Query 007800
Match_columns 589
No_of_seqs 184 out of 1405
Neff 8.7
Searched_HMMs 29240
Date Mon Mar 25 10:49:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007800.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/007800hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2wvg_A PDC, pyruvate decarboxy 100.0 8.4E-93 2.9E-97 785.3 51.3 555 26-585 2-562 (568)
2 2vbi_A Pyruvate decarboxylase; 100.0 2.8E-92 9.5E-97 780.9 54.6 551 27-585 3-554 (566)
3 2vk8_A Pyruvate decarboxylase 100.0 2.5E-92 8.4E-97 781.2 47.6 548 26-583 3-561 (563)
4 1ovm_A Indole-3-pyruvate decar 100.0 9.4E-91 3.2E-95 767.2 46.9 547 23-582 1-550 (552)
5 2vbf_A Branched-chain alpha-ke 100.0 4.3E-90 1.5E-94 764.0 47.4 541 23-582 21-569 (570)
6 2nxw_A Phenyl-3-pyruvate decar 100.0 1.3E-89 4.3E-94 758.6 46.9 539 26-586 20-564 (565)
7 3eya_A Pyruvate dehydrogenase 100.0 6.6E-89 2.2E-93 750.8 41.9 516 26-568 2-533 (549)
8 1ybh_A Acetolactate synthase, 100.0 1.3E-87 4.4E-92 746.7 43.6 522 25-567 10-561 (590)
9 4feg_A Pyruvate oxidase; carba 100.0 1.7E-87 5.7E-92 746.6 44.0 517 26-565 10-547 (603)
10 1ozh_A ALS, acetolactate synth 100.0 2.2E-87 7.7E-92 740.7 42.4 516 27-567 11-546 (566)
11 1t9b_A Acetolactate synthase, 100.0 5.9E-87 2E-91 747.0 45.6 522 27-567 82-640 (677)
12 2pgn_A Cyclohexane-1,2-dione h 100.0 3.6E-87 1.2E-91 742.4 42.3 522 26-569 3-552 (589)
13 2uz1_A Benzaldehyde lyase; thi 100.0 3.9E-87 1.3E-91 739.2 36.5 520 26-570 3-552 (563)
14 1q6z_A BFD, BFDC, benzoylforma 100.0 4.5E-86 1.5E-90 725.7 44.3 512 26-566 1-527 (528)
15 1v5e_A Pyruvate oxidase; oxido 100.0 1.8E-85 6.2E-90 728.5 43.1 514 26-566 3-541 (590)
16 2x7j_A 2-succinyl-5-enolpyruvy 100.0 9.8E-87 3.4E-91 741.1 32.9 534 26-581 30-597 (604)
17 2iht_A Carboxyethylarginine sy 100.0 8.7E-86 3E-90 729.6 37.8 517 26-564 11-561 (573)
18 2pan_A Glyoxylate carboligase; 100.0 2.7E-85 9.1E-90 731.7 41.9 522 27-567 27-583 (616)
19 3lq1_A 2-succinyl-5-enolpyruvy 100.0 2.6E-85 8.9E-90 726.0 31.5 526 26-574 10-570 (578)
20 2q28_A Oxalyl-COA decarboxylas 100.0 1.2E-84 4.1E-89 719.9 33.7 518 26-569 7-549 (564)
21 2c31_A Oxalyl-COA decarboxylas 100.0 1.8E-84 6.3E-89 718.7 33.2 525 26-576 9-559 (568)
22 3hww_A 2-succinyl-5-enolpyruvy 100.0 3.1E-83 1.1E-87 706.2 26.2 519 26-580 7-555 (556)
23 3cf4_G Acetyl-COA decarboxylas 99.8 1.3E-20 4.4E-25 174.1 1.2 137 224-363 23-168 (170)
24 2c42_A Pyruvate-ferredoxin oxi 99.8 1.5E-18 5.1E-23 203.5 16.5 170 390-566 813-1072(1231)
25 1yd7_A 2-keto acid:ferredoxin 99.6 3.7E-16 1.3E-20 163.5 10.4 165 24-196 20-191 (395)
26 1w85_A Pyruvate dehydrogenase 99.6 5.6E-16 1.9E-20 160.0 11.0 121 434-564 137-267 (368)
27 2bfd_A 2-oxoisovalerate dehydr 99.6 7.9E-16 2.7E-20 160.6 9.3 119 436-564 159-287 (400)
28 1qs0_A 2-oxoisovalerate dehydr 99.6 3.1E-15 1.1E-19 156.0 11.4 119 436-564 178-307 (407)
29 2o1x_A 1-deoxy-D-xylulose-5-ph 99.6 2.9E-15 9.9E-20 166.2 11.5 171 391-569 56-294 (629)
30 3l84_A Transketolase; TKT, str 99.6 2.8E-15 9.6E-20 164.8 11.2 116 437-564 112-242 (632)
31 1umd_A E1-alpha, 2-OXO acid de 99.6 4.7E-15 1.6E-19 153.6 11.8 115 440-564 149-269 (367)
32 1ytl_A Acetyl-COA decarboxylas 99.6 1.6E-16 5.6E-21 145.6 0.5 104 225-334 24-142 (174)
33 3uk1_A Transketolase; structur 99.6 3.6E-15 1.2E-19 165.7 11.0 117 437-565 153-288 (711)
34 3kom_A Transketolase; rossmann 99.6 8E-15 2.8E-19 162.2 12.2 118 436-564 113-249 (663)
35 3m49_A Transketolase; alpha-be 99.5 1.4E-14 4.7E-19 160.7 12.5 118 437-565 138-274 (690)
36 2e6k_A Transketolase; structur 99.5 1.1E-14 3.6E-19 162.0 11.2 117 436-564 115-250 (651)
37 2ozl_A PDHE1-A type I, pyruvat 99.5 1.9E-14 6.4E-19 148.1 12.1 117 436-564 137-263 (365)
38 2o1s_A 1-deoxy-D-xylulose-5-ph 99.5 4.4E-14 1.5E-18 156.7 14.8 166 391-564 54-284 (621)
39 2r8o_A Transketolase 1, TK 1; 99.5 1.7E-14 5.8E-19 160.8 11.5 120 435-565 110-248 (669)
40 3mos_A Transketolase, TK; thia 99.5 1.2E-14 4E-19 160.3 9.9 116 436-564 118-242 (616)
41 1itz_A Transketolase; calvin c 99.5 2.3E-14 7.8E-19 159.8 12.0 118 436-564 124-261 (675)
42 1gpu_A Transketolase; transfer 99.5 1.9E-14 6.7E-19 160.5 11.3 118 436-564 113-250 (680)
43 1r9j_A Transketolase; domains, 99.5 1.4E-13 4.8E-18 153.2 12.2 118 436-564 113-250 (673)
44 3rim_A Transketolase, TK; TPP, 99.3 1.6E-11 5.5E-16 136.0 12.0 118 436-564 130-269 (700)
45 2yic_A 2-oxoglutarate decarbox 99.1 1.1E-10 3.6E-15 132.3 6.8 122 433-564 239-384 (868)
46 2xt6_A 2-oxoglutarate decarbox 98.9 6.7E-10 2.3E-14 128.9 7.2 120 435-564 486-629 (1113)
47 2jgd_A 2-oxoglutarate dehydrog 98.9 2E-09 6.9E-14 122.5 7.7 119 436-564 318-456 (933)
48 2qtc_A Pyruvate dehydrogenase 98.9 4.2E-09 1.4E-13 119.5 10.3 118 436-564 189-392 (886)
49 2c42_A Pyruvate-ferredoxin oxi 98.4 3.6E-06 1.2E-10 99.2 16.3 156 26-192 6-172 (1231)
50 3ahc_A Phosphoketolase, xylulo 97.9 8.1E-06 2.8E-10 91.2 6.2 119 438-566 174-322 (845)
51 1umd_B E1-beta, 2-OXO acid deh 95.5 0.37 1.3E-05 48.3 16.5 115 67-195 52-177 (324)
52 1w85_B Pyruvate dehydrogenase 95.4 0.11 3.7E-06 52.2 12.0 115 67-196 51-177 (324)
53 2bfd_B 2-oxoisovalerate dehydr 95.1 0.059 2E-06 54.6 8.9 169 67-265 68-248 (342)
54 2ozl_B PDHE1-B, pyruvate dehyd 95.0 0.18 6.3E-06 50.9 12.3 115 66-194 62-187 (341)
55 1ybh_A Acetolactate synthase, 94.6 0.22 7.6E-06 54.3 12.5 108 443-563 61-172 (590)
56 1ozh_A ALS, acetolactate synth 94.4 0.24 8.1E-06 53.9 12.2 151 394-563 15-170 (566)
57 2uz1_A Benzaldehyde lyase; thi 94.4 0.24 8.1E-06 53.8 12.1 118 430-563 42-164 (563)
58 3mos_A Transketolase, TK; thia 94.1 0.55 1.9E-05 51.4 14.2 152 30-194 320-474 (616)
59 2iht_A Carboxyethylarginine sy 93.9 0.28 9.5E-06 53.4 11.5 150 394-563 16-171 (573)
60 2pan_A Glyoxylate carboligase; 93.9 0.4 1.4E-05 52.6 12.9 119 430-563 66-188 (616)
61 1qs0_B 2-oxoisovalerate dehydr 93.8 0.23 7.8E-06 50.1 9.9 115 67-195 53-178 (338)
62 1t9b_A Acetolactate synthase, 93.6 0.34 1.2E-05 53.8 11.6 152 394-563 86-242 (677)
63 1v5e_A Pyruvate oxidase; oxido 93.2 0.5 1.7E-05 51.5 12.1 118 430-564 44-165 (590)
64 2o1s_A 1-deoxy-D-xylulose-5-ph 93.2 0.89 3.1E-05 49.8 14.1 151 27-194 319-480 (621)
65 3eya_A Pyruvate dehydrogenase 93.0 0.34 1.2E-05 52.3 10.3 118 430-563 42-162 (549)
66 2r8o_A Transketolase 1, TK 1; 92.9 0.61 2.1E-05 51.6 12.2 171 66-265 402-577 (669)
67 2o1x_A 1-deoxy-D-xylulose-5-ph 92.8 0.55 1.9E-05 51.6 11.6 151 26-194 321-482 (629)
68 1ik6_A Pyruvate dehydrogenase; 92.7 0.21 7.1E-06 51.0 7.5 115 67-195 99-224 (369)
69 2q28_A Oxalyl-COA decarboxylas 92.6 0.65 2.2E-05 50.3 11.8 120 430-563 46-169 (564)
70 2e6k_A Transketolase; structur 92.3 0.41 1.4E-05 52.8 9.7 118 66-194 397-517 (651)
71 2c31_A Oxalyl-COA decarboxylas 92.2 0.67 2.3E-05 50.2 11.2 120 430-563 48-171 (568)
72 4feg_A Pyruvate oxidase; carba 92.1 0.27 9.4E-06 53.8 8.1 119 429-563 50-171 (603)
73 2x7j_A 2-succinyl-5-enolpyruvy 91.4 0.5 1.7E-05 51.7 9.2 119 430-564 70-199 (604)
74 2nxw_A Phenyl-3-pyruvate decar 91.3 0.74 2.5E-05 49.9 10.4 111 443-563 70-186 (565)
75 3l84_A Transketolase; TKT, str 91.2 0.86 2.9E-05 49.9 10.7 115 68-194 385-501 (632)
76 2pgn_A Cyclohexane-1,2-dione h 91.2 0.98 3.3E-05 49.2 11.2 108 443-563 54-165 (589)
77 1q6z_A BFD, BFDC, benzoylforma 91.2 0.47 1.6E-05 51.0 8.5 120 429-564 38-162 (528)
78 3hww_A 2-succinyl-5-enolpyruvy 90.5 0.61 2.1E-05 50.4 8.7 108 443-563 57-171 (556)
79 1itz_A Transketolase; calvin c 90.2 0.89 3.1E-05 50.3 9.8 116 67-193 415-534 (675)
80 3kom_A Transketolase; rossmann 90.2 1.4 4.9E-05 48.5 11.4 114 67-193 404-522 (663)
81 1d4o_A NADP(H) transhydrogenas 90.2 0.11 3.6E-06 45.8 1.8 88 225-312 12-107 (184)
82 1pno_A NAD(P) transhydrogenase 90.2 0.1 3.4E-06 45.8 1.7 89 224-312 12-108 (180)
83 2vbi_A Pyruvate decarboxylase; 89.9 0.97 3.3E-05 48.9 9.7 123 430-564 42-170 (566)
84 1r9j_A Transketolase; domains, 89.8 0.79 2.7E-05 50.7 9.0 116 66-193 402-521 (673)
85 1djl_A Transhydrogenase DIII; 89.6 0.12 4E-06 46.6 1.7 88 225-312 35-130 (207)
86 2fsv_C NAD(P) transhydrogenase 89.3 0.18 6.1E-06 45.2 2.6 88 225-312 36-131 (203)
87 2bru_C NAD(P) transhydrogenase 89.2 0.1 3.5E-06 45.9 1.0 90 223-312 18-115 (186)
88 2vk8_A Pyruvate decarboxylase 89.0 1.2 4E-05 48.2 9.5 157 395-564 9-171 (563)
89 2wvg_A PDC, pyruvate decarboxy 88.6 1.6 5.3E-05 47.3 10.2 123 430-564 42-170 (568)
90 1gpu_A Transketolase; transfer 88.5 0.9 3.1E-05 50.3 8.2 115 67-193 410-529 (680)
91 1s5p_A NAD-dependent deacetyla 88.1 0.52 1.8E-05 44.8 5.2 69 294-362 159-230 (235)
92 3lq1_A 2-succinyl-5-enolpyruvy 88.0 1.2 4.1E-05 48.4 8.7 117 430-563 50-178 (578)
93 3uk1_A Transketolase; structur 87.8 1.8 6E-05 48.1 9.9 115 67-193 449-566 (711)
94 1w85_A Pyruvate dehydrogenase 86.7 1 3.6E-05 45.8 6.8 114 77-196 147-269 (368)
95 2hjh_A NAD-dependent histone d 86.0 1 3.6E-05 45.5 6.3 71 295-365 248-319 (354)
96 1ovm_A Indole-3-pyruvate decar 85.8 3.1 0.00011 44.7 10.5 120 430-563 44-170 (552)
97 1yc5_A NAD-dependent deacetyla 84.8 0.92 3.2E-05 43.4 5.0 69 295-363 173-244 (246)
98 2vbf_A Branched-chain alpha-ke 84.1 3.5 0.00012 44.5 9.9 121 430-563 64-190 (570)
99 3m49_A Transketolase; alpha-be 83.8 3.1 0.00011 46.0 9.3 113 69-193 431-546 (690)
100 3pki_A NAD-dependent deacetyla 83.7 1.7 5.8E-05 43.5 6.5 71 295-365 199-272 (355)
101 1m2k_A Silent information regu 83.6 1.3 4.5E-05 42.4 5.5 69 295-363 170-241 (249)
102 1ma3_A SIR2-AF2, transcription 83.4 1 3.5E-05 43.2 4.7 69 295-363 176-247 (253)
103 3k35_A NAD-dependent deacetyla 83.3 1.7 6E-05 42.9 6.4 71 295-365 199-272 (318)
104 1yd7_A 2-keto acid:ferredoxin 81.2 1.3 4.4E-05 45.6 4.8 107 442-561 74-186 (395)
105 3riy_A NAD-dependent deacetyla 80.9 1.6 5.6E-05 42.3 5.1 65 295-359 205-272 (273)
106 2bfd_A 2-oxoisovalerate dehydr 80.2 3.8 0.00013 42.1 7.9 110 79-194 169-287 (400)
107 2l69_A Rossmann 2X3 fold prote 80.2 5.8 0.0002 30.9 6.9 58 514-578 17-74 (134)
108 4iao_A NAD-dependent histone d 79.8 2.6 8.9E-05 44.0 6.4 71 295-365 386-457 (492)
109 1qs0_A 2-oxoisovalerate dehydr 79.6 2.8 9.7E-05 43.1 6.7 111 79-195 188-308 (407)
110 1ik6_A Pyruvate dehydrogenase; 79.1 5.3 0.00018 40.5 8.5 99 443-559 109-218 (369)
111 2ozl_A PDHE1-A type I, pyruvat 78.1 5 0.00017 40.6 7.9 109 79-195 147-264 (365)
112 1q1a_A HST2 protein; ternary c 78.0 1.9 6.5E-05 42.2 4.6 66 299-364 208-279 (289)
113 1o97_D Electron transferring f 77.0 2.9 9.9E-05 41.5 5.6 111 238-363 204-319 (320)
114 2ozl_B PDHE1-B, pyruvate dehyd 76.9 4.6 0.00016 40.5 7.2 100 443-560 73-183 (341)
115 3glr_A NAD-dependent deacetyla 75.2 5 0.00017 39.0 6.7 70 297-366 192-267 (285)
116 1q14_A HST2 protein; histone d 74.9 3.9 0.00013 41.3 6.0 66 299-364 216-287 (361)
117 3rim_A Transketolase, TK; TPP, 74.4 11 0.00037 41.7 9.8 156 26-193 374-553 (700)
118 1j8f_A SIRT2, sirtuin 2, isofo 72.6 3.6 0.00012 40.9 5.0 71 295-365 213-305 (323)
119 1efv_A Electron transfer flavo 72.0 7.3 0.00025 38.5 7.1 112 238-364 199-314 (315)
120 1qs0_B 2-oxoisovalerate dehydr 71.4 8 0.00027 38.6 7.4 101 443-560 63-173 (338)
121 1umd_A E1-alpha, 2-OXO acid de 67.2 14 0.00048 37.3 8.2 98 91-194 167-269 (367)
122 3c2q_A Uncharacterized conserv 64.8 2.5 8.5E-05 41.3 1.8 101 257-363 232-339 (345)
123 3u31_A SIR2A, transcriptional 61.6 5.5 0.00019 38.9 3.7 46 295-340 209-256 (290)
124 1umd_B E1-beta, 2-OXO acid deh 61.0 19 0.00064 35.6 7.6 98 443-558 62-170 (324)
125 1w85_B Pyruvate dehydrogenase 60.0 15 0.0005 36.4 6.7 99 443-559 61-170 (324)
126 1efp_A ETF, protein (electron 57.7 16 0.00054 35.9 6.3 110 238-362 194-307 (307)
127 3jx9_A Putative phosphoheptose 56.9 44 0.0015 29.5 8.5 90 26-125 24-114 (170)
128 2bfd_B 2-oxoisovalerate dehydr 56.9 18 0.00063 36.0 6.8 99 443-559 78-188 (342)
129 3i9v_3 NADH-quinone oxidoreduc 54.3 19 0.00064 40.5 7.0 81 220-314 321-403 (783)
130 3trj_A Phosphoheptose isomeras 54.2 52 0.0018 29.7 8.9 101 28-128 34-154 (201)
131 2hy5_A Putative sulfurtransfer 53.2 66 0.0023 26.7 8.8 88 222-311 18-130 (130)
132 1tk9_A Phosphoheptose isomeras 53.1 59 0.002 28.6 9.1 98 28-125 30-147 (188)
133 2iv2_X Formate dehydrogenase H 52.5 8.1 0.00028 42.9 3.6 115 221-339 80-207 (715)
134 2ivf_A Ethylbenzene dehydrogen 47.2 3.6 0.00012 47.6 -0.4 115 221-339 163-287 (976)
135 4grd_A N5-CAIR mutase, phospho 40.2 71 0.0024 28.2 6.8 36 18-53 16-51 (173)
136 1e2b_A Enzyme IIB-cellobiose; 40.1 42 0.0014 27.0 5.2 32 236-267 4-35 (106)
137 2xbl_A Phosphoheptose isomeras 39.9 1.4E+02 0.0049 26.2 9.5 99 28-126 36-154 (198)
138 1x92_A APC5045, phosphoheptose 39.7 1.2E+02 0.004 26.9 8.9 97 29-126 34-151 (199)
139 3fxa_A SIS domain protein; str 38.8 47 0.0016 29.8 6.0 46 222-268 31-76 (201)
140 2m1z_A LMO0427 protein; homolo 38.6 42 0.0014 27.2 4.8 92 242-363 11-104 (106)
141 2d1p_A TUSD, hypothetical UPF0 38.0 1.7E+02 0.0059 24.6 9.0 86 222-309 30-140 (140)
142 2yva_A DNAA initiator-associat 34.4 1.7E+02 0.006 25.6 9.1 100 28-127 29-148 (196)
143 3ibs_A Conserved hypothetical 32.0 1.6E+02 0.0056 26.2 8.7 101 439-545 92-207 (218)
144 3lou_A Formyltetrahydrofolate 31.8 56 0.0019 31.7 5.4 65 458-549 97-168 (292)
145 3cvj_A Putative phosphoheptose 31.3 1.7E+02 0.0058 26.9 8.8 36 90-125 109-145 (243)
146 2i2w_A Phosphoheptose isomeras 29.8 1.3E+02 0.0045 27.0 7.5 40 88-127 130-170 (212)
147 2d00_A V-type ATP synthase sub 29.7 92 0.0031 25.2 5.6 32 513-549 12-43 (109)
148 3ahc_A Phosphoketolase, xylulo 29.3 5.5E+02 0.019 28.7 13.4 116 66-191 491-623 (845)
149 1hi9_A Dciaa, dipeptide transp 28.8 17 0.00056 35.0 1.0 145 27-182 36-204 (274)
150 2dko_A Caspase-3; low barrier 28.8 66 0.0022 27.6 4.8 73 486-563 17-92 (146)
151 2l69_A Rossmann 2X3 fold prote 28.5 1.9E+02 0.0066 22.3 6.7 31 514-549 92-122 (134)
152 3n0v_A Formyltetrahydrofolate 28.0 53 0.0018 31.7 4.5 65 458-549 92-163 (286)
153 3nbm_A PTS system, lactose-spe 28.0 79 0.0027 25.5 4.9 34 236-269 7-40 (108)
154 3o1l_A Formyltetrahydrofolate 27.7 58 0.002 31.7 4.8 65 458-549 107-178 (302)
155 1u7z_A Coenzyme A biosynthesis 27.6 1.1E+02 0.0036 28.5 6.3 81 405-496 7-97 (226)
156 3s99_A Basic membrane lipoprot 27.5 2.4E+02 0.0081 27.9 9.5 41 31-71 76-116 (356)
157 2zxr_A Single-stranded DNA spe 27.2 1.6E+02 0.0053 32.2 8.5 104 221-336 58-161 (666)
158 3v7e_A Ribosome-associated pro 26.8 87 0.003 23.7 4.7 44 226-270 17-60 (82)
159 4au1_A Precorrin-8X methylmuta 26.4 71 0.0024 29.6 4.8 52 222-273 158-211 (229)
160 2r48_A Phosphotransferase syst 26.1 60 0.0021 26.2 3.8 66 250-336 20-85 (106)
161 3czc_A RMPB; alpha/beta sandwi 26.0 88 0.003 25.1 4.9 30 236-265 19-49 (110)
162 2q5c_A NTRC family transcripti 25.9 1.9E+02 0.0065 25.9 7.7 85 458-549 94-182 (196)
163 3p45_A Caspase-6; protease, hu 25.6 62 0.0021 28.8 4.2 59 486-549 45-105 (179)
164 2gk4_A Conserved hypothetical 25.5 1.2E+02 0.0042 28.1 6.4 63 429-495 19-93 (232)
165 3l49_A ABC sugar (ribose) tran 25.3 4E+02 0.014 24.5 12.1 88 27-114 108-216 (291)
166 3bch_A 40S ribosomal protein S 25.1 1.8E+02 0.006 27.4 7.3 73 223-314 89-163 (253)
167 2yic_A 2-oxoglutarate decarbox 24.8 87 0.003 35.4 6.1 97 91-193 278-383 (868)
168 2ioj_A Hypothetical protein AF 24.8 69 0.0024 26.9 4.2 34 236-272 74-107 (139)
169 3da8_A Probable 5'-phosphoribo 24.6 1.2E+02 0.004 27.9 6.0 89 458-574 14-109 (215)
170 3sho_A Transcriptional regulat 24.5 3.1E+02 0.011 23.6 8.9 88 30-125 29-124 (187)
171 4b4k_A N5-carboxyaminoimidazol 24.4 1.4E+02 0.0048 26.5 6.0 35 20-54 28-62 (181)
172 4fx5_A VON willebrand factor t 24.2 2.5E+02 0.0086 28.9 9.2 93 439-549 160-255 (464)
173 3cpq_A 50S ribosomal protein L 24.1 1.6E+02 0.0056 23.5 6.2 43 226-269 27-69 (110)
174 2kyr_A Fructose-like phosphotr 24.0 66 0.0023 26.2 3.6 90 243-362 15-106 (111)
175 2csu_A 457AA long hypothetical 24.0 2E+02 0.0069 29.6 8.4 74 29-106 76-167 (457)
176 2r4q_A Phosphotransferase syst 23.9 61 0.0021 26.2 3.4 66 250-336 20-85 (106)
177 1m3s_A Hypothetical protein YC 23.5 3.4E+02 0.012 23.3 9.0 46 222-269 24-69 (186)
178 3i9v_3 NADH-quinone oxidoreduc 23.4 2.7E+02 0.0094 30.9 9.9 93 223-317 488-594 (783)
179 1jeo_A MJ1247, hypothetical pr 23.4 3.5E+02 0.012 23.1 9.5 47 221-269 26-72 (180)
180 3rot_A ABC sugar transporter, 23.1 4.5E+02 0.015 24.3 13.5 149 26-196 112-279 (297)
181 1tvm_A PTS system, galactitol- 23.1 1.1E+02 0.0037 24.8 4.9 31 236-266 22-53 (113)
182 2b99_A Riboflavin synthase; lu 23.0 1.6E+02 0.0054 25.5 6.1 28 31-58 19-49 (156)
183 3sho_A Transcriptional regulat 22.9 1.4E+02 0.0047 26.1 6.1 45 222-268 26-70 (187)
184 1q16_A Respiratory nitrate red 22.8 69 0.0023 37.8 4.9 114 221-339 163-287 (1247)
185 2qtc_A Pyruvate dehydrogenase 22.8 4.2E+02 0.014 29.9 11.2 172 69-265 566-752 (886)
186 2xhz_A KDSD, YRBH, arabinose 5 22.8 92 0.0031 27.2 4.9 44 224-268 37-80 (183)
187 2lbw_A H/ACA ribonucleoprotein 22.7 2E+02 0.0069 23.5 6.6 43 226-268 26-68 (121)
188 2ql9_A Caspase-7; cysteine pro 22.7 79 0.0027 28.0 4.2 73 486-563 45-120 (173)
189 3kuu_A Phosphoribosylaminoimid 22.6 1.6E+02 0.0055 26.0 6.0 35 18-52 16-50 (174)
190 4ds3_A Phosphoribosylglycinami 22.5 56 0.0019 29.9 3.4 68 457-549 8-83 (209)
191 1rrm_A Lactaldehyde reductase; 22.4 70 0.0024 32.2 4.4 33 235-267 31-63 (386)
192 2xt6_A 2-oxoglutarate decarbox 22.2 85 0.0029 36.6 5.5 97 91-193 523-628 (1113)
193 4gnr_A ABC transporter substra 22.1 1.8E+02 0.006 28.1 7.3 57 225-284 64-120 (353)
194 2pju_A Propionate catabolism o 22.0 1.7E+02 0.0059 26.9 6.6 141 393-549 48-193 (225)
195 2nap_A Protein (periplasmic ni 21.9 11 0.00039 41.8 -1.9 112 222-335 82-205 (723)
196 2xzm_B RPS0E; ribosome, transl 21.9 1.6E+02 0.0055 27.5 6.4 73 222-313 50-125 (241)
197 1vim_A Hypothetical protein AF 21.6 3.8E+02 0.013 23.6 9.0 45 222-268 34-78 (200)
198 1hqk_A 6,7-dimethyl-8-ribityll 21.6 1.2E+02 0.0041 26.2 5.1 33 31-63 32-69 (154)
199 2keg_A PLNK; protein, peptide, 21.4 45 0.0015 19.5 1.5 14 439-452 6-19 (32)
200 3bfj_A 1,3-propanediol oxidore 21.2 80 0.0027 31.8 4.6 33 235-267 33-67 (387)
201 1h0h_A Formate dehydrogenase ( 20.9 1.4E+02 0.0046 34.4 6.9 97 222-335 89-221 (977)
202 1xmp_A PURE, phosphoribosylami 20.7 2.5E+02 0.0085 24.6 6.9 52 20-71 17-72 (170)
203 3j21_Z 50S ribosomal protein L 20.7 2.2E+02 0.0076 22.2 6.2 43 226-269 21-63 (99)
204 3ors_A N5-carboxyaminoimidazol 20.6 2.2E+02 0.0074 24.8 6.4 32 21-52 10-41 (163)
205 1rvv_A Riboflavin synthase; tr 20.3 1.2E+02 0.0041 26.2 4.8 32 31-62 32-68 (154)
No 1
>2wvg_A PDC, pyruvate decarboxylase; thiamine diphosphate, lyase, flavoprotein, metal-binding, alcohol fermentation; HET: TPU; 1.75A {Zymomonas mobilis} PDB: 2wva_A* 2wvh_A 3oe1_A* 1zpd_A*
Probab=100.00 E-value=8.4e-93 Score=785.34 Aligned_cols=555 Identities=43% Similarity=0.745 Sum_probs=472.9
Q ss_pred cccHHHHHHHHHHHcCCCEEEecCCcchHHHHHhhhcCCCCeEEecCchhHHHHhhhhhhhccCceEEEEeCCcchHHHH
Q 007800 26 VGTLGRHLARRLVEIGAKDVFSVPGDFNLTLLDHLIAEPELNLVGCCNELNAGYAADGYARSRGVGACVVTFTVGGLSVL 105 (589)
Q Consensus 26 ~~~~a~~i~~~L~~~GV~~vfg~pG~~~~~l~~al~~~~~i~~v~~~hE~~A~~~A~gyar~tg~~v~~~t~GpG~~n~~ 105 (589)
.++++++|++.|+++||++|||+||+++.+|+++|.++++|++|.++||++|+|||+||||+||.+||++|+|||++|++
T Consensus 2 ~~~~a~~l~~~L~~~GV~~vfg~PG~~~~~l~~al~~~~~i~~i~~~~E~~Aa~~A~Gyar~tg~~v~~~TsGpG~~N~~ 81 (568)
T 2wvg_A 2 SYTVGTYLAERLVQIGLKHHFAVAGDYNLVLLDNLLLNKNMEQVYCCNELNCGFSAEGYARAKGAAAAVVTYSVGALSAF 81 (568)
T ss_dssp CEEHHHHHHHHHHHTTCSEEEECCCTTTHHHHHHHHTCTTSEEEECSSHHHHHHHHHHHHHHHSCEEEEECTTTTHHHHH
T ss_pred CcCHHHHHHHHHHHcCCCEEEeCCCCccHHHHHHHhccCCceEeccCcHHHHHHHHHHHHHhhCCeEEEEeCCCCHHHHH
Confidence 37899999999999999999999999999999999876689999999999999999999999999999999999999999
Q ss_pred HHHHHhhhcCCcEEEEeCCCCccccCCccceeeecCCCChHHHHHhhhcceeEEEEeCChhhHHHHHHHHHHHhHhcCCc
Q 007800 106 NAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCFQAITCSQAVVNNLGDAHELIDTAISTALKESKP 185 (589)
Q Consensus 106 ~~l~~A~~~~~PllvI~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tk~~~~v~~~~~~~~~l~~A~~~a~~~~gP 185 (589)
+||++|+.+++|||+|+|+++....+++..+||..+.+++.||.++++++|||+.++.+++++++.|++|++.|.+++||
T Consensus 82 ~gia~A~~~~vPll~itg~~~~~~~~~~~~~~~~~g~~~~~d~~~~~~~~tk~~~~v~~~~~~~~~l~~A~~~A~~~~GP 161 (568)
T 2wvg_A 82 DAIGGAYAENLPVILISGAPNNNDHAAGHVLHHALGKTDYHYQLEMAKNITAAAEAIYTPEEAPAKIDHVIKTALREKKP 161 (568)
T ss_dssp HHHHHHHHTTCCEEEEEEECCGGGTTTTCBCTTSCSSSCCCHHHHHHTTSCSCEEEECSGGGHHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHhhhCCCEEEEeCCCChhHhccCcceeeeccccchHHHHHHHHhhEeEEEEeCCHHHHHHHHHHHHHHHHhCCCC
Confidence 99999999999999999999999888777777776656777899999999999999999999999999999999998899
Q ss_pred EEEEeCCCCCCCCCCCCCCCCCCccCCCCCCChhhHHHHHHHHHHHHHhcCCCEEEeCcccchhhHHHHHHHHHHHhCCc
Q 007800 186 VYISISCNLPGIPHPTFARDPVPFFLAPKVSNQLGLEAAVEATADFLNKAVKPVLVGGPNIRVAKAQKAFIELADATGYP 265 (589)
Q Consensus 186 V~i~iP~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~L~~a~rpviv~G~g~~~~~~~~~l~~lae~~~~P 265 (589)
|||+||.|++.. +.......+....+......+.++.+++++++|.+++||+|++|.++.++++.+++.+|+|++++|
T Consensus 162 V~l~iP~dv~~~--~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~~a~rpvil~G~g~~~~~a~~~l~~lae~~~~P 239 (568)
T 2wvg_A 162 VYLEIACNIASM--PCAAPGPASALFNDEASDEASLNAAVEETLKFIANRDKVAVLVGSKLRAAGAEEAAVKFADALGGA 239 (568)
T ss_dssp EEEEEEGGGTTS--EECEECCTHHHHCCCCCCHHHHHHHHHHHHHHHTTCCCEEEEECTTTTTTTCHHHHHHHHHHHCCE
T ss_pred EEEEechhHhcC--cccCCCcccccccCCCCCccccHHHHHHHHHHHHhCCCCEEEECccccccchHHHHHHHHHHhCCC
Confidence 999999999763 221101111101111122234456799999999999999999999999989999999999999999
Q ss_pred eEEccCCccCCCCCCCCceeeecCCCCCHHHHHHhhhcCEEEEeCCCcCCcccccccccCCCCceEEEcCCceeecCCCc
Q 007800 266 IAIMPSGKGLVPEHHPHFIGTYWGAVSSSFCGEIVESADAYVFVGPIFNDYSSVGYSLLIKKEKAIIVQPHRVTVGNGPS 345 (589)
Q Consensus 266 v~tt~~~~g~~~~~~pl~~G~~~g~~~~~~~~~~l~~aD~vl~lG~~~~~~~~~~~~~~~~~~~~i~id~d~~~~~~~~~ 345 (589)
|++|+++||.||++||+++|.|.|..+.+.++++++++|+||++|+++.+..+..|..+.++.++||||.|+.+++ +.+
T Consensus 240 v~~t~~~kg~~~~~~p~~~G~~~g~~~~~~~~~~l~~aDlvl~iG~~~~~~~~~~~~~~~~~~~~i~id~d~~~~~-~~~ 318 (568)
T 2wvg_A 240 VATMAAAKSFFPEENPHYIGTSWGEVSYPGVEKTMKEADAVIALAPVFNDYSTTGWTDIPDPKKLVLAEPRSVVVN-GIR 318 (568)
T ss_dssp EEEEGGGTTSSCTTSTTEEEEECGGGSCTTHHHHHHHCSEEEEESCCCBTTTTTTTTCCCCTTTEEEECSSEEEET-TEE
T ss_pred EEEchhcCccCCCCCCceeccccCCcCCHHHHHHHHhCCEEEEECCCcccccccccccCCCCCcEEEEeCChhhcC-Cee
Confidence 9999999999999999999998788888889999999999999999999888877776666779999999999997 566
Q ss_pred cccccHHHHHHHHHHHhhcCchhhhhhhhhcC-CCCCCCCCCCCCCcCHHHHHHHHHhhCCCCCEEEecCCccccccccc
Q 007800 346 LGWVFMADFLSALAKKLRKNTTALENYRRIYV-PPGIPVKRAQNEPLRVNVLFKHIQDMLSGDTAVIAETGDSWFNCQKL 424 (589)
Q Consensus 346 ~~~~~~~~~l~~L~~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~~~~~~~~L~~~l~~~~iiv~d~G~~~~~~~~~ 424 (589)
+.+++++.+|++|.+.++.....|..|.+... ..........+.++++..+++.|++.+++++++++|+|++.+...++
T Consensus 319 ~~~~~~~~~l~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~iv~~d~G~~~~~~~~~ 398 (568)
T 2wvg_A 319 FPSVHLKDYLTRLAQKVSKKTGALDFFKSLNAGELKKAAPADPSAPLVNAEIARQVEALLTPNTTVIAETGDSWFNAQRM 398 (568)
T ss_dssp EESCCHHHHHHHHHHHCCCCCHHHHHHHHTTCCSCCCCCCCCTTSBCCHHHHHHHHHTTCCTTEEEEECSSHHHHHHHTC
T ss_pred cCCCCHHHHHHHHHHhccccccchhhhhhhhhhcccccccCCCCCccCHHHHHHHHHHhCCCCCEEEEcCcHHHHHHhhc
Confidence 66778999999999887643323334433221 11111111124469999999999999999999999999987555666
Q ss_pred cccCCCeeEeccCccchhhHHHHHHHHhhhcCCCcEEEEEcchhhcccHHHHHHHHHhCCCeEEEEEeCCchhhhhhhcC
Q 007800 425 RLPENCGYEFQMQYGSIGWSVGATLGYAQAAKDKRVIACIGDGSFQVTAQEISTMIRCGQRSIIFLINNGGYTIEVEIHD 504 (589)
Q Consensus 425 ~~~~~~~~~~~~~~g~mG~~l~~aiGaala~~~~~vv~i~GDGsf~~~~~el~ta~~~~l~v~ivv~nN~~~~~~~~~~~ 504 (589)
..+++.+++.+.++++||+++|+|+|+++|.|+++||+++|||+|+|+++||+|++++++|+++||+||++|++.+.++.
T Consensus 399 ~~~~~~~~~~~~~~g~~G~~l~~A~G~ala~~~~~vv~i~GDGs~~~~~~el~ta~~~~l~~~ivv~NN~~~~~~~~~~~ 478 (568)
T 2wvg_A 399 KLPNGARVEYEMQWGHIGWSVPAAFGYAVGAPERRNILMVGDGSFQLTAQEVAQMVRLKLPVIIFLINNYGYTIEVMIHD 478 (568)
T ss_dssp CCCTTCEEECCTTTCCTTTHHHHHHHHHHHCTTSEEEEEEEHHHHHHHGGGHHHHHHTTCCCEEEEEECSSCHHHHTTSC
T ss_pred ccCCCCeEEeCCCcchhhhHHHHHHHHHHhCCCCcEEEEEcChhHhccHHHHHHHHHcCCCcEEEEEECCcceEeeeecc
Confidence 66667779999999999999999999999999999999999999999999999999999999999999999999655444
Q ss_pred CCCCCCCCCChHHHHHHccCCC----CCccEEEeCCHHHHHHHHHHhhhcCC-CCeEEEEEEcCCCCChHHHHHHHHHhh
Q 007800 505 GPYNVIKNWDYTGLVNAIHNGE----GKCWTAKVRSEDELTEAMKTATGEQK-DSLCFIEVFVHKDDTSKELLEWGSRVS 579 (589)
Q Consensus 505 ~~~~~~~~~d~~~la~a~G~~~----~~~~~~~v~~~~~l~~al~~a~~~~~-~gp~viev~~~~~~~~~~~~~~~~~~~ 579 (589)
..|.+++++||.++|++||++. ...++++|++.++|+++|+++++ . +||+||||.|++++.++.++++.+.++
T Consensus 479 ~~~~~~~~~d~~~~a~a~G~~~~~~~~~~~~~~v~~~~el~~al~~a~~--~~~gp~liev~~~~~~~~~~~~~~~~~~~ 556 (568)
T 2wvg_A 479 GPYNNIKNWDYAGLMEVFNGNGGYDSGAGKGLKAKTGGELAEAIKVALA--NTDGPTLIECFIGREDCTEELVKWGKRVA 556 (568)
T ss_dssp CGGGCCCCCCHHHHHHHHHCTTSSSCCCCEEEEESBHHHHHHHHHHHHH--CCSSCEEEEEECCTTCCCHHHHHHHHHHH
T ss_pred CCCcCCCCCCHHHHHHHhCCCcccccCCcceEEeCCHHHHHHHHHHHHh--cCCCcEEEEEEcCccccCHHHHHHHHHhH
Confidence 4566677899999999999710 01157899999999999999996 5 899999999999999999999999887
Q ss_pred hhcCCC
Q 007800 580 AANSRP 585 (589)
Q Consensus 580 ~~~~~~ 585 (589)
..+.++
T Consensus 557 ~~~~~~ 562 (568)
T 2wvg_A 557 AANSRK 562 (568)
T ss_dssp HHHHCC
T ss_pred hhccCC
Confidence 755544
No 2
>2vbi_A Pyruvate decarboxylase; thiamine pyrophosphate, lyase, pyruv flavoprotein, THDP-dependent enzyme; HET: TPP; 2.75A {Acetobacter pasteurianus}
Probab=100.00 E-value=2.8e-92 Score=780.89 Aligned_cols=551 Identities=43% Similarity=0.741 Sum_probs=473.2
Q ss_pred ccHHHHHHHHHHHcCCCEEEecCCcchHHHHHhhhcCCCCeEEecCchhHHHHhhhhhhhccCceEEEEeCCcchHHHHH
Q 007800 27 GTLGRHLARRLVEIGAKDVFSVPGDFNLTLLDHLIAEPELNLVGCCNELNAGYAADGYARSRGVGACVVTFTVGGLSVLN 106 (589)
Q Consensus 27 ~~~a~~i~~~L~~~GV~~vfg~pG~~~~~l~~al~~~~~i~~v~~~hE~~A~~~A~gyar~tg~~v~~~t~GpG~~n~~~ 106 (589)
++++++|++.|+++||++|||+||+.+.+|+++|.++++|++|.++||++|+|||+||+|+||.+||++|+|||++|+++
T Consensus 3 ~~~a~~l~~~L~~~GV~~vfg~PG~~~~~l~~al~~~~~i~~v~~~~E~~Aa~~A~Gyar~tg~~v~~~TsGpG~~N~~~ 82 (566)
T 2vbi_A 3 YTVGMYLAERLVQIGLKHHFAVAGDYNLVLLDQLLLNKDMKQIYCCNELNCGFSAEGYARSNGAAAAVVTFSVGAISAMN 82 (566)
T ss_dssp CBHHHHHHHHHHHHTCSEEEECCCTTTHHHHHHHHTCTTSEEEECSSHHHHHHHHHHHHHHHSCEEEEECTTTTHHHHHH
T ss_pred cCHHHHHHHHHHHcCCCEEEeCCCCccHHHHHHHhcCCCCeEEeeCcHHHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHH
Confidence 79999999999999999999999999999999998766899999999999999999999999998999999999999999
Q ss_pred HHHHhhhcCCcEEEEeCCCCccccCCccceeeecCCCChHHHHHhhhcceeEEEEeCChhhHHHHHHHHHHHhHhcCCcE
Q 007800 107 AIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCFQAITCSQAVVNNLGDAHELIDTAISTALKESKPV 186 (589)
Q Consensus 107 ~l~~A~~~~~PllvI~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tk~~~~v~~~~~~~~~l~~A~~~a~~~~gPV 186 (589)
||++|+.+++|||+|+|+++....+++..+||..+.+++.||..+++++|||+.++.+++++++.|++|++.|.+++|||
T Consensus 83 gia~A~~~~vPll~itg~~~~~~~~~~~~~~~~~g~~~~~d~~~~~~~~tk~~~~v~~~~~~~~~l~~A~~~a~~~~GPV 162 (566)
T 2vbi_A 83 ALGGAYAENLPVILISGAPNSNDQGTGHILHHTIGKTDYSYQLEMARQVTCAAESITDAHSAPAKIDHVIRTALRERKPA 162 (566)
T ss_dssp HHHHHHHTTCCEEEEEEECCGGGTTTTCBCTTSCSSSCCTHHHHHHHTTCSEEEEECSSSSHHHHHHHHHHHHHHHTCCE
T ss_pred HHHHHHhhCCCEEEEECCCChHHhccCceeeeeccCcchHHHHHHHhhhEeEEEEeCCHHHHHHHHHHHHHHHHhCCCCE
Confidence 99999999999999999999988877776777765567778999999999999999999999999999999999988999
Q ss_pred EEEeCCCCCCCCCCCCCCCCCCccCCCCCCChhhHHHHHHHHHHHHHhcCCCEEEeCcccchhhHHHHHHHHHHHhCCce
Q 007800 187 YISISCNLPGIPHPTFARDPVPFFLAPKVSNQLGLEAAVEATADFLNKAVKPVLVGGPNIRVAKAQKAFIELADATGYPI 266 (589)
Q Consensus 187 ~i~iP~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~L~~a~rpviv~G~g~~~~~~~~~l~~lae~~~~Pv 266 (589)
||+||.|++..+ .......+....+......+..+.+++++++|.+++||+|++|.++.++++.+++.+|+|++++||
T Consensus 163 ~l~iP~d~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~~a~rpvi~~G~g~~~~~a~~~l~~lae~~~~Pv 240 (566)
T 2vbi_A 163 YLDIACNIASEP--CVRPGPVSSLLSEPEIDHTSLKAAVDATVALLEKSASPVMLLGSKLRAANALAATETLADKLQCAV 240 (566)
T ss_dssp EEEEETTTTTSB--CCEECCCSCSCCCBCCCHHHHHHHHHHHHHHHHTCSCEEEEECTTTTTTTCHHHHHHHHHHHCCEE
T ss_pred EEEechhhcCCe--ecCCCCCcccCCCCCCCcchHHHHHHHHHHHHHhCCCCEEEECcCccccchHHHHHHHHHHhCCCE
Confidence 999999997632 211001111111111122344567999999999999999999999999999999999999999999
Q ss_pred EEccCCccCCCCCCCCceeeecCCCCCHHHHHHhhhcCEEEEeCCCcCCcccccccccCCCCceEEEcCCceeecCCCcc
Q 007800 267 AIMPSGKGLVPEHHPHFIGTYWGAVSSSFCGEIVESADAYVFVGPIFNDYSSVGYSLLIKKEKAIIVQPHRVTVGNGPSL 346 (589)
Q Consensus 267 ~tt~~~~g~~~~~~pl~~G~~~g~~~~~~~~~~l~~aD~vl~lG~~~~~~~~~~~~~~~~~~~~i~id~d~~~~~~~~~~ 346 (589)
++|+++||.||++||+++|.|.|..+++.+++++++||+||+||+++.+..+..|..+.++.++||||.|+.+++ +.++
T Consensus 241 ~~t~~~~g~~~~~~p~~~G~~~g~~~~~~~~~~l~~aDlvl~iG~~~~~~~~~~~~~~~~~~~~i~id~d~~~~~-~~~~ 319 (566)
T 2vbi_A 241 TIMAAAKGFFPEDHAGFRGLYWGEVSNPGVQELVETSDALLCIAPVFNDYSTVGWSAWPKGPNVILAEPDRVTVD-GRAY 319 (566)
T ss_dssp EEEGGGTTSSCTTSTTEEEEECGGGSCTTHHHHHHTCSEEEEESCCCBTTTTTTTTSCCCSTTEEEECSSEEEET-TEEE
T ss_pred EEccccCccCCCCCccccccccCccCCHHHHHHHHhCCEEEEECCCccccccccccccCCCCcEEEEeCChheeC-Cccc
Confidence 999999999999999999998787888889999999999999999999988877876666779999999999997 5566
Q ss_pred ccccHHHHHHHHHHHhhcCchhhhhhhhhcCCCCCCCCCCCCCCcCHHHHHHHHHhhCCCCCEEEecCCccccccccccc
Q 007800 347 GWVFMADFLSALAKKLRKNTTALENYRRIYVPPGIPVKRAQNEPLRVNVLFKHIQDMLSGDTAVIAETGDSWFNCQKLRL 426 (589)
Q Consensus 347 ~~~~~~~~l~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~L~~~l~~~~iiv~d~G~~~~~~~~~~~ 426 (589)
.+++++.+|++|.+.+......|..|.+.... . . ....+.++++..+++.|++.+++++++++|+|++.+...++..
T Consensus 320 ~~~~~~~~l~~L~~~l~~~~~~~~~~~~~~~~-~-~-~~~~~~~l~~~~~~~~l~~~l~~~~iv~~d~G~~~~~~~~~~~ 396 (566)
T 2vbi_A 320 DGFTLRAFLQALAEKAPARPASAQKSSVPTCS-L-T-ATSDEAGLTNDEIVRHINALLTSNTTLVAETGDSWFNAMRMTL 396 (566)
T ss_dssp ESSCHHHHHHHHHHHCCCCCHHHHTSCCCCCC-C-C-CCCTTSCCCHHHHHHHHHHHCCTTEEEEECSSHHHHHHHTCCC
T ss_pred CCccHHHHHHHHHHhccccccchhhhhhhhhc-c-C-CCCCCCccCHHHHHHHHHHhcCCCCEEEECCchHHHhhhheEC
Confidence 67788999999998876433233333321111 1 1 1123347999999999999999999999999998755556666
Q ss_pred cCCCeeEeccCccchhhHHHHHHHHhhhcCCCcEEEEEcchhhcccHHHHHHHHHhCCCeEEEEEeCCchhhhhhhcCCC
Q 007800 427 PENCGYEFQMQYGSIGWSVGATLGYAQAAKDKRVIACIGDGSFQVTAQEISTMIRCGQRSIIFLINNGGYTIEVEIHDGP 506 (589)
Q Consensus 427 ~~~~~~~~~~~~g~mG~~l~~aiGaala~~~~~vv~i~GDGsf~~~~~el~ta~~~~l~v~ivv~nN~~~~~~~~~~~~~ 506 (589)
+++.+++.+.++|+||+++|+|+|+++|.|+++||+++|||+|+|+++||+|++++++|+++||+||++|++.+.++...
T Consensus 397 ~~~~~~~~~~~~g~mG~~l~~A~G~ala~~~~~vv~~~GDG~~~~~~~eL~ta~~~~l~~~ivv~nN~~~~~~~~~~~~~ 476 (566)
T 2vbi_A 397 PRGARVELEMQWGHIGWSVPSAFGNAMGSQDRQHVVMVGDGSFQLTAQEVAQMVRYELPVIIFLINNRGYVIEIAIHDGP 476 (566)
T ss_dssp CTTCEEECCTTTCCTTTHHHHHHHHHHTCTTSEEEEEEEHHHHHHHGGGHHHHHHTTCCCEEEEEECSSCHHHHTTSCCG
T ss_pred CCCCEEEecCcccchhhHHHHHHHHHHhCCCCcEEEEEcchHHHhhHHHHHHHHHhCCCcEEEEEECCcceEEEeeccCC
Confidence 66677999999999999999999999999999999999999999999999999999999999999999999965544445
Q ss_pred CCCCCCCChHHHHHHccCCCCCccEEEeCCHHHHHHHHHHhhhcCC-CCeEEEEEEcCCCCChHHHHHHHHHhhhhcCCC
Q 007800 507 YNVIKNWDYTGLVNAIHNGEGKCWTAKVRSEDELTEAMKTATGEQK-DSLCFIEVFVHKDDTSKELLEWGSRVSAANSRP 585 (589)
Q Consensus 507 ~~~~~~~d~~~la~a~G~~~~~~~~~~v~~~~~l~~al~~a~~~~~-~gp~viev~~~~~~~~~~~~~~~~~~~~~~~~~ 585 (589)
|++++++||.++|++||+.....++++|++.++|+++|+++++ . +||+||||.|++++.++.++.+.+.++..+.++
T Consensus 477 ~~~~~~~d~~~~a~a~G~~~~~~~~~~v~~~~el~~al~~a~~--~~~gp~liev~~~~~~~~~~~~~~~~~~~~~~~~~ 554 (566)
T 2vbi_A 477 YNYIKNWDYAGLMEVFNAGEGHGLGLKATTPKELTEAIARAKA--NTRGPTLIECQIDRTDCTDMLVQWGRKVASTNARK 554 (566)
T ss_dssp GGCCCCCCTTTHHHHHHTTTCCCEEEEECSHHHHHHHHHHHHH--CCSSCEEEEEECCTTCCCHHHHHHHHHHHHHHTCC
T ss_pred ccCCCCCCHHHHHHHcCCCCCCccEEEeCCHHHHHHHHHHHHh--cCCCcEEEEEEeCcccCcHHHHHHHHHhhhhcccc
Confidence 6667789999999999972122368899999999999999986 5 899999999999999999999999988877764
No 3
>2vk8_A Pyruvate decarboxylase isozyme 1; asymmetric active sites, phenylalanine catabolism, tryptophan catabolism, thiamine pyrophosphate; HET: TPP; 1.42A {Saccharomyces cerevisiae} PDB: 1qpb_A* 2vk1_A* 2w93_A* 1pyd_A* 1pvd_A* 2vk4_A* 2vjy_A* 2g1i_A*
Probab=100.00 E-value=2.5e-92 Score=781.24 Aligned_cols=548 Identities=32% Similarity=0.504 Sum_probs=465.8
Q ss_pred cccHHHHHHHHHHHcCCCEEEecCCcchHHHHHhhhcCCCCeEEecCchhHHHHhhhhhhhccCceEEEEeCCcchHHHH
Q 007800 26 VGTLGRHLARRLVEIGAKDVFSVPGDFNLTLLDHLIAEPELNLVGCCNELNAGYAADGYARSRGVGACVVTFTVGGLSVL 105 (589)
Q Consensus 26 ~~~~a~~i~~~L~~~GV~~vfg~pG~~~~~l~~al~~~~~i~~v~~~hE~~A~~~A~gyar~tg~~v~~~t~GpG~~n~~ 105 (589)
.++++++|++.|+++||++|||+||+.+.+|+++|.++++|++|.++||++|+|||+||||+||.+||++|+|||++|++
T Consensus 3 ~~~~a~~l~~~L~~~GV~~vfg~PG~~~~~l~~al~~~~~i~~v~~~~E~~Aa~~A~Gyar~tg~~v~~~TsGpG~~N~~ 82 (563)
T 2vk8_A 3 EITLGKYLFERLKQVNVNTVFGLPGDFNLSLLDKIYEVEGMRWAGNANELNAAYAADGYARIKGMSCIITTFGVGELSAL 82 (563)
T ss_dssp EEEHHHHHHHHHHHTTCCEEEECCCGGGHHHHHGGGGSTTCEECCCSSHHHHHHHHHHHHHHHSCEEEEEETTHHHHHHH
T ss_pred ccCHHHHHHHHHHHcCCCEEEEcCCcchHHHHHHHhhcCCceEEccCchHHHHHHHHHHHHhhCCcEEEEcCCCcHHHHH
Confidence 48999999999999999999999999999999999876689999999999999999999999998999999999999999
Q ss_pred HHHHHhhhcCCcEEEEeCCCCccccCCccceeeecCCCChHHHHHhhhcceeEEEEeCChhhHHHHHHHHHHHhHhcCCc
Q 007800 106 NAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCFQAITCSQAVVNNLGDAHELIDTAISTALKESKP 185 (589)
Q Consensus 106 ~~l~~A~~~~~PllvI~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tk~~~~v~~~~~~~~~l~~A~~~a~~~~gP 185 (589)
+||++|+.+++|||+|+|+++....+.+..+||.++...+++|.++++++|||+.++++++++++.|++|++.|.+++||
T Consensus 83 ~gia~A~~~~~Pll~itg~~~~~~~~~~~~~~~~~g~~~~q~~~~~~~~~~k~~~~v~~~~~~~~~i~~A~~~A~~~~GP 162 (563)
T 2vk8_A 83 NGIAGSYAEHVGVLHVVGVPSISAQAKQLLLHHTLGNGDFTVFHRMSANISETTAMITDIATAPAEIDRCIRTTYVTQRP 162 (563)
T ss_dssp HHHHHHHHHTCCEEEEEEECCHHHHHTTCCCTTSCSSSCSSHHHHHHHTTCSEEEECCCTTTHHHHHHHHHHHHHHHTSC
T ss_pred HHHHHHHhhCCCEEEEECCCChHHhhcccccccccCCcchHHHHHHhhhhEEEEEEeCCHHHHHHHHHHHHHHHHhCCCC
Confidence 99999999999999999999998776777788888755566789999999999999999999999999999999988899
Q ss_pred EEEEeCCCCCCCCCCCCC-CCCCCccCCCCCCChhhHHHHHHHHHHHHHhcCCCEEEeCcccchhhHHHHHHHHHHHhCC
Q 007800 186 VYISISCNLPGIPHPTFA-RDPVPFFLAPKVSNQLGLEAAVEATADFLNKAVKPVLVGGPNIRVAKAQKAFIELADATGY 264 (589)
Q Consensus 186 V~i~iP~dv~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~i~~~~~~L~~a~rpviv~G~g~~~~~~~~~l~~lae~~~~ 264 (589)
|||+||.|++..+.+... ..+.. .......+.+....+++++++|.+|+||+|++|.++.++++.+++.+|+|++++
T Consensus 163 V~l~iP~d~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~i~~~~~~l~~a~rpvIl~G~g~~~~~a~~~l~~lae~~~~ 240 (563)
T 2vk8_A 163 VYLGLPANLVDLNVPAKLLQTPID--MSLKPNDAESEKEVIDTILVLDKDAKNPVILADACCSRHDVKAETKKLIDLTQF 240 (563)
T ss_dssp EEEEEETTGGGSEEEGGGGGSCCC--CSCCCCCHHHHHHHHHHHHHHHHHCSSEEEEECHHHHHTTCHHHHHHHHHHHCC
T ss_pred EEEEechhhhcCccCCccCcCccc--ccCCCCCchhhHHHHHHHHHHHHhCCCCEEEECcCccccchHHHHHHHHHHhCC
Confidence 999999999753111100 00111 111111223345679999999999999999999999988999999999999999
Q ss_pred ceEEccCCccCCCCCCCCceeeecCCCCCHHHHHHhhhcCEEEEeCCCcCCcccccccccCCCCceEEEcCCceeecCCC
Q 007800 265 PIAIMPSGKGLVPEHHPHFIGTYWGAVSSSFCGEIVESADAYVFVGPIFNDYSSVGYSLLIKKEKAIIVQPHRVTVGNGP 344 (589)
Q Consensus 265 Pv~tt~~~~g~~~~~~pl~~G~~~g~~~~~~~~~~l~~aD~vl~lG~~~~~~~~~~~~~~~~~~~~i~id~d~~~~~~~~ 344 (589)
||++|++|||.||++||+++|.|.|..+++.+++++++||+||+||+++++..+..|..+.++.++||||.|+.+++ +.
T Consensus 241 Pv~~t~~g~g~~~~~~p~~~G~~~g~~~~~~~~~~l~~aDlvl~iG~~~~~~~~~~~~~~~~~~~~i~id~d~~~~~-~~ 319 (563)
T 2vk8_A 241 PAFVTPMGKGSIDEQHPRYGGVYVGTLSKPEVKEAVESADLILSVGALLSDFNTGSFSYSYKTKNIVEFHSDHMKIR-NA 319 (563)
T ss_dssp CEEECTTTTTSSCTTSTTEEEECCGGGSCHHHHHHHHTCSEEEEESCCCCTTTTTTTCCCCCCSCEEEECSSEEEET-TE
T ss_pred CEEECcccCccCCCCCCcccccccCccCCHHHHHHHHhCCEEEEECCCCccccccccccCCCCCeEEEEeCCceEEC-Cc
Confidence 99999999999999999999997777888999999999999999999999988877765556678999999999997 55
Q ss_pred ccccccHHHHHHHHHHHhhcCchhhhhhhhhcCCCCCCCCCCCCCCcCHHHHHHHHHhhCCCCCEEEecCCccccccccc
Q 007800 345 SLGWVFMADFLSALAKKLRKNTTALENYRRIYVPPGIPVKRAQNEPLRVNVLFKHIQDMLSGDTAVIAETGDSWFNCQKL 424 (589)
Q Consensus 345 ~~~~~~~~~~l~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~L~~~l~~~~iiv~d~G~~~~~~~~~ 424 (589)
+..+++++.+|++|.+.+....+.|..+.+.. ..........+.++++..+++.|++.+++++++++|+|++.++..++
T Consensus 320 ~~~~~~~~~~l~~L~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~iv~~d~G~~~~~~~~~ 398 (563)
T 2vk8_A 320 TFPGVQMKFVLQKLLTTIADAAKGYKPVAVPA-RTPANAAVPASTPLKQEWMWNQLGNFLQEGDVVIAETGTSAFGINQT 398 (563)
T ss_dssp EEETCCHHHHHHHHHHHHHHHTTTCCCCCCCC-CCCCCCCCCTTCBCCHHHHHHHHTTTCCTTCEEEECTTHHHHHGGGS
T ss_pred ccCCcCHHHHHHHHHHhhccccchhhhhhhhh-hcccccCCCCCCCcCHHHHHHHHHHhCCCCCEEEECCchHHHHHhhc
Confidence 66677889999999887754322111111110 00000011124479999999999999999999999999987666666
Q ss_pred cccCCCeeEeccCccchhhHHHHHHHHhhhcCC----CcEEEEEcchhhcccHHHHHHHHHhCCCeEEEEEeCCchhhhh
Q 007800 425 RLPENCGYEFQMQYGSIGWSVGATLGYAQAAKD----KRVIACIGDGSFQVTAQEISTMIRCGQRSIIFLINNGGYTIEV 500 (589)
Q Consensus 425 ~~~~~~~~~~~~~~g~mG~~l~~aiGaala~~~----~~vv~i~GDGsf~~~~~el~ta~~~~l~v~ivv~nN~~~~~~~ 500 (589)
..+++.+++.++++|+||+++|+|+|+++|.|+ ++||+++|||+|+|+++||+|++++++|+++||+||++|++.+
T Consensus 399 ~~~~~~~~~~~~~~g~mG~~l~~A~Gaala~~~~~~~~~vv~~~GDG~~~~~~~el~ta~~~~l~~~ivv~nN~~~~~~~ 478 (563)
T 2vk8_A 399 TFPNNTYGISQVLWGSIGFTTGATLGAAFAAEEIDPKKRVILFIGDGSLQLTVQEISTMIRWGLKPYLFVLNNDGYTIQK 478 (563)
T ss_dssp CCCSSCEEECCTTTCCTTHHHHHHHHHHHHHHHHCTTCCEEEEEEHHHHHHHGGGHHHHHHTTCCCEEEEEESSSCHHHH
T ss_pred CcCCCCeEEcccchhhhhhHHHHHHHHHHhCcccCCCCCEEEEEcchHhhccHHHHHHHHHcCCCcEEEEEECCcchhhh
Confidence 666777899999999999999999999999887 9999999999999999999999999999999999999999955
Q ss_pred hhcC--CCCCCCCCCChHHHHHHccCCCCCcc---EEEeCCHHHHHHHHH-HhhhcCCCCeEEEEEEcCCCCChHHHHHH
Q 007800 501 EIHD--GPYNVIKNWDYTGLVNAIHNGEGKCW---TAKVRSEDELTEAMK-TATGEQKDSLCFIEVFVHKDDTSKELLEW 574 (589)
Q Consensus 501 ~~~~--~~~~~~~~~d~~~la~a~G~~~~~~~---~~~v~~~~~l~~al~-~a~~~~~~gp~viev~~~~~~~~~~~~~~ 574 (589)
..++ ..++++.++||.++|++||+ + +++|++.++|+++|+ ++++ ..++|+||||.|++++.++.++.+
T Consensus 479 ~~~~~~~~~~~~~~~d~~~~a~a~G~-----~~~~~~~v~~~~el~~al~~~a~~-~~~~p~liev~~~~~~~~~~~~~~ 552 (563)
T 2vk8_A 479 LIHGPKAQYNEIQGWDHLSLLPTFGA-----KDYETHRVATTGEWDKLTQDKSFN-DNSKIRMIEVMLPVFDAPQNLVEQ 552 (563)
T ss_dssp HHSCTTCGGGCCCCCCGGGHHHHTTC-----SSEEEEEECBHHHHHHHHTCTTTT-SCSSEEEEEEECCTTCCCHHHHHH
T ss_pred hhhCCCCCcccCCCCCHHHHHHHhCC-----CCCcEEEecCHHHHHHHHHHHHHh-CCCCcEEEEEEeCccccCHHHHHH
Confidence 4432 23456678999999999999 8 999999999999999 7874 234799999999999999999999
Q ss_pred HHHhhhhcC
Q 007800 575 GSRVSAANS 583 (589)
Q Consensus 575 ~~~~~~~~~ 583 (589)
.+.++..+.
T Consensus 553 ~~~~~~~~~ 561 (563)
T 2vk8_A 553 AKLTAATNA 561 (563)
T ss_dssp HHHHHHHHH
T ss_pred HHHhhhhhc
Confidence 998877654
No 4
>1ovm_A Indole-3-pyruvate decarboxylase; thiamine diphosphate, indole-3-acetic acid, TDP dependent enzyme, lyase; HET: TPP; 2.65A {Enterobacter cloacae} SCOP: c.31.1.3 c.36.1.5 c.36.1.9
Probab=100.00 E-value=9.4e-91 Score=767.22 Aligned_cols=547 Identities=31% Similarity=0.481 Sum_probs=463.1
Q ss_pred CCCcccHHHHHHHHHHHcCCCEEEecCCcchHHHHHhhhcCCCCeEEecCchhHHHHhhhhhhhccCceEEEEeCCcchH
Q 007800 23 GASVGTLGRHLARRLVEIGAKDVFSVPGDFNLTLLDHLIAEPELNLVGCCNELNAGYAADGYARSRGVGACVVTFTVGGL 102 (589)
Q Consensus 23 ~~~~~~~a~~i~~~L~~~GV~~vfg~pG~~~~~l~~al~~~~~i~~v~~~hE~~A~~~A~gyar~tg~~v~~~t~GpG~~ 102 (589)
|+..++++++|++.|+++||++|||+||+++.+|+++|.++++|++|.++||++|+|||+||||++|.+||++|+|||++
T Consensus 1 m~~~~~~a~~l~~~L~~~GV~~vfg~PG~~~~~l~~al~~~~~i~~i~~~~E~~A~~~A~Gyar~tg~~v~~~tsGpG~~ 80 (552)
T 1ovm_A 1 MRTPYCVADYLLDRLTDCGADHLFGVPGDYNLQFLDHVIDSPDICWVGCANELNASYAADGYARCKGFAALLTTFGVGEL 80 (552)
T ss_dssp --CCCBHHHHHHHHHHHTTCCEEEECCCGGGHHHHHHHHHCSSCEEEECSSHHHHHHHHHHHHHHHSCEEEEEETTHHHH
T ss_pred CCCccCHHHHHHHHHHHcCCCEEEECCChhHHHHHHHHhcCCCceEEeeCcHHHHHHHHHHHHHhhCCcEEEEccCCcHH
Confidence 34568999999999999999999999999999999999876789999999999999999999999988999999999999
Q ss_pred HHHHHHHHhhhcCCcEEEEeCCCCccccCCccceeeecCCCChHHHHHhhhcceeEEEEeCChhhHHHHHHHHHHHhHhc
Q 007800 103 SVLNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCFQAITCSQAVVNNLGDAHELIDTAISTALKE 182 (589)
Q Consensus 103 n~~~~l~~A~~~~~PllvI~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tk~~~~v~~~~~~~~~l~~A~~~a~~~ 182 (589)
|+++||++|+.+++|||+|+|+++....+.+..+||.++..++.+|.++++++|||++++++ +++++.|++|++.|.++
T Consensus 81 N~~~gv~~A~~~~~Pll~itg~~p~~~~~~~~~~~~~~g~~~~q~~~~~~~~~tk~~~~v~~-~~~~~~i~~A~~~a~~~ 159 (552)
T 1ovm_A 81 SAMNGIAGSYAEHVPVLHIVGAPGTAAQQRGELLHHTLGDGEFRHFYHMSEPITVAQAVLTE-QNACYEIDRVLTTMLRE 159 (552)
T ss_dssp HTHHHHHHHHHTTCCEEEEEEECCHHHHHHTCCCTTSCSSSCCSHHHHHTGGGCSEEEECCT-TTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhcCCEEEEECCCCHHHHhcccccccccCCCcHHHHHHHHHhheeEEEEEcc-ccHHHHHHHHHHHHHhC
Confidence 99999999999999999999999998776666778877755566789999999999999999 99999999999999988
Q ss_pred CCcEEEEeCCCCCCCCCCCCCCCCCCccCCCCCCChhhHHHHHHHHHHHHHhcCCCEEEeCcccchhhHHHHHHHHHHHh
Q 007800 183 SKPVYISISCNLPGIPHPTFARDPVPFFLAPKVSNQLGLEAAVEATADFLNKAVKPVLVGGPNIRVAKAQKAFIELADAT 262 (589)
Q Consensus 183 ~gPV~i~iP~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~L~~a~rpviv~G~g~~~~~~~~~l~~lae~~ 262 (589)
+|||||+||.|++.. +.... +.+..............+.+++++++|.+++||+|++|.|+.++++.+++.+|+|++
T Consensus 160 ~GPV~l~iP~d~~~~--~~~~~-~~~~~~~~~~~~~~~~~~~i~~~~~~l~~a~rpvil~G~g~~~~~a~~~l~~lae~~ 236 (552)
T 1ovm_A 160 RRPGYLMLPADVAKK--AATPP-VNALTHKQAHADSACLKAFRDAAENKLAMSKRTALLADFLVLRHGLKHALQKWVKEV 236 (552)
T ss_dssp TCCEEEEEEHHHHHS--BCCCC-SSCCCCCCCCCCHHHHHHHHHHHHHHHHTCSCEEEEECHHHHHTTCHHHHHHHHHHS
T ss_pred CCCEEEEeehhhccC--ccCCC-cccccccCCCCCccchHHHHHHHHHHHHhCCCCEEEECcCccccCHHHHHHHHHHHH
Confidence 899999999998642 21111 111111111112234567899999999999999999999999889999999999999
Q ss_pred CCceEEccCCccCCCCCCCCceeeecCCCCCHHHHHHhhhcCEEEEeCCCcCCcccccccccCCCCceEEEcCCceeecC
Q 007800 263 GYPIAIMPSGKGLVPEHHPHFIGTYWGAVSSSFCGEIVESADAYVFVGPIFNDYSSVGYSLLIKKEKAIIVQPHRVTVGN 342 (589)
Q Consensus 263 ~~Pv~tt~~~~g~~~~~~pl~~G~~~g~~~~~~~~~~l~~aD~vl~lG~~~~~~~~~~~~~~~~~~~~i~id~d~~~~~~ 342 (589)
++||++|++|||.||++||+++|.|.|..+++.+++++++||+||+||+++++..+..|..+.++.++||||.|+.+++
T Consensus 237 ~~Pv~~t~~~~g~~~~~hp~~~G~~~g~~~~~~~~~~l~~aD~vl~iG~~~~~~~~~~~~~~~~~~~~i~id~d~~~~~- 315 (552)
T 1ovm_A 237 PMAHATMLMGKGIFDERQAGFYGTYSGSASTGAVKEAIEGADTVLCVGTRFTDTLTAGFTHQLTPAQTIEVQPHAARVG- 315 (552)
T ss_dssp CCEEEECGGGTTSSCTTSTTCCCCCCGGGSCHHHHHHHHTSSEEEEESCCCCTTTTTTTCCCCCTTTEEEECSSEEEET-
T ss_pred CCCEEEccccCccCCCCCcCeecccCCCCCCHHHHHHHHhCCEEEEECCCCCcccccccccCCCCCeEEEEeCChheeC-
Confidence 9999999999999999999999987677888999999999999999999999988877776666778999999999997
Q ss_pred CCccccccHHHHHHHHHHHhhcCchhhh-hhhhhcCCCCCCCCCCCCCCcCHHHHHHHHHhhCCCCCEEEecCCcccccc
Q 007800 343 GPSLGWVFMADFLSALAKKLRKNTTALE-NYRRIYVPPGIPVKRAQNEPLRVNVLFKHIQDMLSGDTAVIAETGDSWFNC 421 (589)
Q Consensus 343 ~~~~~~~~~~~~l~~L~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~i~~~~~~~~L~~~l~~~~iiv~d~G~~~~~~ 421 (589)
+.+..+++++.+|++|.+ +......|. .|++.. .. .......++++..+++.|++.+++++++++|+|++.+..
T Consensus 316 ~~~~~~~~~~~~l~~L~~-l~~~~~~~~~~~~~~~-~~---~~~~~~~~~~~~~~~~~l~~~l~~~~ivv~d~G~~~~~~ 390 (552)
T 1ovm_A 316 DVWFTGIPMNQAIETLVE-LCKQHVHAGLMSSSSG-AI---PFPQPDGSLTQENFWRTLQTFIRPGDIILADQGTSAFGA 390 (552)
T ss_dssp TEEEESCCHHHHHHHHHH-HHHTSCCC------------------CCSBCCHHHHHHHHHHHCCTTCEEEECTTHHHHHH
T ss_pred CcccCCccHHHHHHHHHh-Ccccccchhhhhhhcc-cc---ccCCCCCccCHHHHHHHHHHhcCCCCEEEECCchHHHHH
Confidence 555667788999999988 754322221 222110 00 011133469999999999999999999999999987655
Q ss_pred ccccccCCCeeEeccCccchhhHHHHHHHHhhhcCCCcEEEEEcchhhcccHHHHHHHHHhCCCeEEEEEeCCchhhhhh
Q 007800 422 QKLRLPENCGYEFQMQYGSIGWSVGATLGYAQAAKDKRVIACIGDGSFQVTAQEISTMIRCGQRSIIFLINNGGYTIEVE 501 (589)
Q Consensus 422 ~~~~~~~~~~~~~~~~~g~mG~~l~~aiGaala~~~~~vv~i~GDGsf~~~~~el~ta~~~~l~v~ivv~nN~~~~~~~~ 501 (589)
.++..+++.+++.++++|+||+++|+|+|++++.|+++||+++|||+|+|+++||+|++++++|+++||+||++|++.+.
T Consensus 391 ~~~~~~~~~~~~~~~~~g~mG~~l~~A~G~a~a~~~~~vv~~~GDG~~~~~~~el~ta~~~~l~~~ivv~nN~~~~~~~~ 470 (552)
T 1ovm_A 391 IDLRLPADVNFIVQPLWGSIGYTLAAAFGAQTACPNRRVIVLTGDGAAQLTIQELGSMLRDKQHPIILVLNNEGYTVERA 470 (552)
T ss_dssp TTCCCCSSCEEECCTTTCCTTHHHHHHHHHHHHCTTSCEEEEEEHHHHHHHTTHHHHHHHTTCCCEEEEEESSSCHHHHH
T ss_pred HhcccCCCCeEEechhhHhhhhHHHHHHHHHHhCCCCcEEEEECchHHHhHHHHHHHHHHhCCCCEEEEEECCCCeEEEe
Confidence 66666677779999999999999999999999999999999999999999999999999999999999999999999654
Q ss_pred hcC--CCCCCCCCCChHHHHHHccCCCCCccEEEeCCHHHHHHHHHHhhhcCCCCeEEEEEEcCCCCChHHHHHHHHHhh
Q 007800 502 IHD--GPYNVIKNWDYTGLVNAIHNGEGKCWTAKVRSEDELTEAMKTATGEQKDSLCFIEVFVHKDDTSKELLEWGSRVS 579 (589)
Q Consensus 502 ~~~--~~~~~~~~~d~~~la~a~G~~~~~~~~~~v~~~~~l~~al~~a~~~~~~gp~viev~~~~~~~~~~~~~~~~~~~ 579 (589)
.++ ..|+++.++||.++|++||+. ..+++++|++.++|+++|+++++ .+||+||||.+++++.++.++.+.+.++
T Consensus 471 ~~~~~~~~~~~~~~d~~~~a~a~G~~-~~~~~~~v~~~~~l~~al~~a~~--~~gp~liev~~~~~~~~~~l~~~~~~~~ 547 (552)
T 1ovm_A 471 IHGAEQRYNDIALWNWTHIPQALSLD-PQSECWRVSEAEQLADVLEKVAH--HERLSLIEVMLPKADIPPLLGALTKALE 547 (552)
T ss_dssp HSCTTCGGGCCCCCCGGGSTTTSCSS-CCEEEEEECBHHHHHHHHHHHTT--CSSEEEEEEECCTTCCCHHHHHHHHHHH
T ss_pred eccCCCCcccCCCCCHHHHHHHhCCC-cCCCEEEeCCHHHHHHHHHHHHh--CCCCEEEEEEcCcccCCHHHHHHHHHHh
Confidence 432 234566789999999999971 11157899999999999999986 7899999999999999999999999887
Q ss_pred hhc
Q 007800 580 AAN 582 (589)
Q Consensus 580 ~~~ 582 (589)
..+
T Consensus 548 ~~~ 550 (552)
T 1ovm_A 548 ACN 550 (552)
T ss_dssp HHH
T ss_pred hhh
Confidence 654
No 5
>2vbf_A Branched-chain alpha-ketoacid decarboxylase; KDCA, flavoprotein, THDP-dependent enzymes, thiamine pyrophosphate, lyase; HET: TPP; 1.60A {Lactococcus lactis} PDB: 2vbg_A*
Probab=100.00 E-value=4.3e-90 Score=763.99 Aligned_cols=541 Identities=31% Similarity=0.488 Sum_probs=460.9
Q ss_pred CCCcccHHHHHHHHHHHcCCCEEEecCCcchHHHHHhhhcCCCCeEEecCchhHHHHhhhhhhhccCceEEEEeCCcchH
Q 007800 23 GASVGTLGRHLARRLVEIGAKDVFSVPGDFNLTLLDHLIAEPELNLVGCCNELNAGYAADGYARSRGVGACVVTFTVGGL 102 (589)
Q Consensus 23 ~~~~~~~a~~i~~~L~~~GV~~vfg~pG~~~~~l~~al~~~~~i~~v~~~hE~~A~~~A~gyar~tg~~v~~~t~GpG~~ 102 (589)
|.+.++++++|++.|+++||++|||+||+++.+|+++|.++++|++|.++||++|+|||+||||+||.+||++|+|||++
T Consensus 21 m~~~~~~a~~l~~~L~~~GV~~vfg~PG~~~~~l~~al~~~~~i~~i~~~~E~~A~~~A~GyAr~tG~~v~~~tsGpG~~ 100 (570)
T 2vbf_A 21 MASMYTVGDYLLDRLHELGIEEIFGVPGDYNLQFLDQIISREDMKWIGNANELNASYMADGYARTKKAAAFLTTFGVGEL 100 (570)
T ss_dssp ---CCBHHHHHHHHHHHTTCCEEEECCCGGGHHHHHHHHHCSSCEEEECSSHHHHHHHHHHHHHHHSCEEEEEETTHHHH
T ss_pred ccCcCCHHHHHHHHHHHcCCCEEEECCCcchHHHHHHHhcCCCCeEECcCcHHHHHHHHHHHHHHhCCeEEEEcCCCCHH
Confidence 55568999999999999999999999999999999999876789999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhcCCcEEEEeCCCCccccCCccceeeecCCCChHHHHHhhhcceeEEEEeCChhhHHHHHHHHHHHhHhc
Q 007800 103 SVLNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCFQAITCSQAVVNNLGDAHELIDTAISTALKE 182 (589)
Q Consensus 103 n~~~~l~~A~~~~~PllvI~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tk~~~~v~~~~~~~~~l~~A~~~a~~~ 182 (589)
|+++||++|+.+++|||+|+|+++....+++..+||+.+..++.+|..+++++|||+.++.+ +++++.+++|++.|.++
T Consensus 101 N~~~gi~~A~~~~vPlv~itg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tk~~~~v~~-~~~~~~l~~A~~~A~~~ 179 (570)
T 2vbf_A 101 SAINGLAGSYAENLPVVEIVGSPTSKVQNDGKFVHHTLADGDFKHFMKMHEPVTAARTLLTA-ENATYEIDRVLSQLLKE 179 (570)
T ss_dssp HHHHHHHHHHHTTCCEEEEEEECCHHHHHHTCCCTTSCSSSCCCHHHHHTGGGCSEEEECCT-TTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhCCCEEEEeCCCCHHHhhccccceeeccccchHHHHHHhhhhEEEEEEECc-ccHHHHHHHHHHHHhhC
Confidence 99999999999999999999999998776666667766655676789999999999999999 99999999999999988
Q ss_pred CCcEEEEeCCCCCCCCCCCCCCCCCCccCCCCCCChhhHHHHHHHHHHHHHhcCCCEEEeCcccchhhHHHHHHHHHHHh
Q 007800 183 SKPVYISISCNLPGIPHPTFARDPVPFFLAPKVSNQLGLEAAVEATADFLNKAVKPVLVGGPNIRVAKAQKAFIELADAT 262 (589)
Q Consensus 183 ~gPV~i~iP~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~L~~a~rpviv~G~g~~~~~~~~~l~~lae~~ 262 (589)
+|||||+||.|++.. +.... ..+.........+.. .+.+++++++|.+++||+|++|.|+.++++.+++.+|+|++
T Consensus 180 ~GPV~l~iP~d~~~~--~~~~~-~~~~~~~~~~~~~~~-~~~i~~~~~~l~~a~rpvil~G~g~~~~~a~~~l~~lae~~ 255 (570)
T 2vbf_A 180 RKPVYINLPVDVAAA--KAEKP-ALSLEKESSTTNTTE-QVILSKIEESLKNAQKPVVIAGHEVISFGLEKTVTQFVSET 255 (570)
T ss_dssp CCCEEEEEEHHHHTS--BCCCC-SSCCC------CHHH-HHHHHHHHHHHHHCSSEEEEECHHHHHTTCHHHHHHHHHHH
T ss_pred CCCEEEEcchhhhcC--cccCC-cccccccCCCCCccH-HHHHHHHHHHHHcCCCCEEEECcCccccChHHHHHHHHHHH
Confidence 899999999999753 22111 111100011111122 56799999999999999999999999999999999999999
Q ss_pred CCceEEccCCccCCCCCCCCceeeecCCCCCHHHHHHhhhcCEEEEeCCCcCCcccccccccCCCCceEEEcCCceeecC
Q 007800 263 GYPIAIMPSGKGLVPEHHPHFIGTYWGAVSSSFCGEIVESADAYVFVGPIFNDYSSVGYSLLIKKEKAIIVQPHRVTVGN 342 (589)
Q Consensus 263 ~~Pv~tt~~~~g~~~~~~pl~~G~~~g~~~~~~~~~~l~~aD~vl~lG~~~~~~~~~~~~~~~~~~~~i~id~d~~~~~~ 342 (589)
++||++|++++|.+|++||+++|.|.|..+++.++++++++|+||+||+++.+..+..|..+.++.++|+||.|+.+++
T Consensus 256 ~~Pv~~t~~~~g~~~~~~p~~~G~~~g~~~~~~~~~~l~~aDlvl~iG~~~~~~~~~~~~~~~~~~~~i~id~d~~~~~- 334 (570)
T 2vbf_A 256 KLPITTLNFGKSAVDESLPSFLGIYNGKLSEISLKNFVESADFILMLGVKLTDSSTGAFTHHLDENKMISLNIDEGIIF- 334 (570)
T ss_dssp CCCEEECSTTTTSSCTTSTTEEEECCGGGSCHHHHHHHHHCSEEEEESCCCCGGGTTTTCCCCCGGGEEEECSSCEEET-
T ss_pred CCCEEECcccCccCCCCCcCccCCcCCCcCCHHHHHHHHhCCEEEEECCCcccccccccccCCCCCeEEEEeCCHHHhC-
Confidence 9999999999999999999999998788888999999999999999999999888877776656678999999999997
Q ss_pred CCccccccHHHHHHHHHHHhhcCchhhhhhhhhcCCCCCCCCCCCCCCcCHHHHHHHHHhhCCCCCEEEecCCccccccc
Q 007800 343 GPSLGWVFMADFLSALAKKLRKNTTALENYRRIYVPPGIPVKRAQNEPLRVNVLFKHIQDMLSGDTAVIAETGDSWFNCQ 422 (589)
Q Consensus 343 ~~~~~~~~~~~~l~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~L~~~l~~~~iiv~d~G~~~~~~~ 422 (589)
+.++.+++++.+|++|.+.+.... |. |... ... ......+.++++..+++.|++.++++++++.|+|++.++..
T Consensus 335 ~~~~~~~~~~~~l~~L~~~l~~~~--~~-~~~~--~~~-~~~~~~~~~~~~~~~~~~l~~~l~~~~iv~~d~G~~~~~~~ 408 (570)
T 2vbf_A 335 NKVVEDFDFRAVVSSLSELKGIEY--EG-QYID--KQY-EEFIPSSAPLSQDRLWQAVESLTQSNETIVAEQGTSFFGAS 408 (570)
T ss_dssp TEEECSSCHHHHHHTGGGCCSCCC--CS-CCCC--CCC-CCCCCCSSBCCHHHHHHHHHHHCCSSEEEEECTTHHHHHHT
T ss_pred CeeecCCCHHHHHHHHHHhccccc--cc-cchh--hhc-cccCCCCCCcCHHHHHHHHHHhcCCCCEEEEeCCHHHHHHH
Confidence 566677889999999977665432 21 2111 010 11112234699999999999999999999999999876555
Q ss_pred cccccCCCeeEeccCccchhhHHHHHHHHhhhcCCCcEEEEEcchhhcccHHHHHHHHHhCCCeEEEEEeCCchhhhhhh
Q 007800 423 KLRLPENCGYEFQMQYGSIGWSVGATLGYAQAAKDKRVIACIGDGSFQVTAQEISTMIRCGQRSIIFLINNGGYTIEVEI 502 (589)
Q Consensus 423 ~~~~~~~~~~~~~~~~g~mG~~l~~aiGaala~~~~~vv~i~GDGsf~~~~~el~ta~~~~l~v~ivv~nN~~~~~~~~~ 502 (589)
++..+++.+++.+.++|+||+++|+|+|+++|.|+++||+++|||+|+|+++||+|++++++|+++||+||++|++.+.+
T Consensus 409 ~~~~~~~~~~~~~~~~g~mG~~l~~A~Gaala~~~~~vv~~~GDG~~~~~~~eL~ta~~~~l~~~ivv~nN~~~~~~~~~ 488 (570)
T 2vbf_A 409 TIFLKSNSRFIGQPLWGSIGYTFPAALGSQIADKESRHLLFIGDGSLQLTVQELGLSIREKLNPICFIINNDGYTVEREI 488 (570)
T ss_dssp TSCCCTTCEEECCTTTCCTTTHHHHHHHHHHHCTTSEEEEEEEHHHHHHHGGGHHHHHHTTCCCEEEEEESSSCHHHHHH
T ss_pred hcccCCCCeEecCccchhhhhhHHHHHHHHHhCCCCcEEEEEcchhhhcCHHHHHHHHHcCCCCEEEEEECCchHHHHHH
Confidence 56666777899999999999999999999999999999999999999999999999999999999999999999996544
Q ss_pred c--CCCCCCCCCCChHHHHHHccCCCCCcc-----EEEeCCHHHHHHHHHHh-hhcCCCCeEEEEEEcCCCCChHHHHHH
Q 007800 503 H--DGPYNVIKNWDYTGLVNAIHNGEGKCW-----TAKVRSEDELTEAMKTA-TGEQKDSLCFIEVFVHKDDTSKELLEW 574 (589)
Q Consensus 503 ~--~~~~~~~~~~d~~~la~a~G~~~~~~~-----~~~v~~~~~l~~al~~a-~~~~~~gp~viev~~~~~~~~~~~~~~ 574 (589)
+ ...++++.++||.++|++||+ + +++|++.++|+++|+++ +. .+||+||||.|++++.++.++++
T Consensus 489 ~~~~~~~~~~~~~d~~~~a~a~G~-----~~~~~~~~~v~~~~el~~al~~a~~~--~~~p~liev~~~~~~~~~~~~~~ 561 (570)
T 2vbf_A 489 HGPTQSYNDIPMWNYSKLPETFGA-----TEDRVVSKIVRTENEFVSVMKEAQAD--VNRMYWIELVLEKEDAPKLLKKM 561 (570)
T ss_dssp SCTTCGGGCCCCCCGGGHHHHTTC-----CTTTEEEEEECBHHHHHHHHHHHHHC--TTSEEEEEEECCTTCCCHHHHHH
T ss_pred hccCCCccCCCCCCHHHHHHHcCC-----CcCCcceEEecCHHHHHHHHHHHHhc--CCCcEEEEEEcCcccccHHHHHH
Confidence 3 224556678999999999999 7 89999999999999984 54 78999999999999999999999
Q ss_pred HHHhhhhc
Q 007800 575 GSRVSAAN 582 (589)
Q Consensus 575 ~~~~~~~~ 582 (589)
.+.++..+
T Consensus 562 ~~~~~~~~ 569 (570)
T 2vbf_A 562 GKLFAEQN 569 (570)
T ss_dssp HHHHHHHT
T ss_pred HHHhhhcc
Confidence 98877653
No 6
>2nxw_A Phenyl-3-pyruvate decarboxylase; thiamine pyrophosphate, asymmetric dimer of dimers, open ACT loops, lyase; HET: TPP; 1.50A {Azospirillum brasilense} PDB: 2q5j_A* 2q5l_A* 2q5o_A* 2q5q_A*
Probab=100.00 E-value=1.3e-89 Score=758.58 Aligned_cols=539 Identities=25% Similarity=0.392 Sum_probs=448.3
Q ss_pred cccHHHHHHHHHHHcCCCEEEecCCcchHHHHHhhhcCCCCeEEecCchhHHHHhhhhhhhccCc-eEEEEeCCcchHHH
Q 007800 26 VGTLGRHLARRLVEIGAKDVFSVPGDFNLTLLDHLIAEPELNLVGCCNELNAGYAADGYARSRGV-GACVVTFTVGGLSV 104 (589)
Q Consensus 26 ~~~~a~~i~~~L~~~GV~~vfg~pG~~~~~l~~al~~~~~i~~v~~~hE~~A~~~A~gyar~tg~-~v~~~t~GpG~~n~ 104 (589)
.++++++|++.|+++||++|||+||+.+.+|+++|.+++.+++|.++||++|+|||+||||+||+ +||++|+|||++|+
T Consensus 20 ~~~~a~~lv~~L~~~GV~~vfg~PG~~~~~l~~al~~~~~~~~i~~~~E~~Aa~~A~GyAr~tgkp~v~~~TsGpG~~N~ 99 (565)
T 2nxw_A 20 HMKLAEALLRALKDRGAQAMFGIPGDFALPFFKVAEETQILPLHTLSHEPAVGFAADAAARYSSTLGVAAVTYGAGAFNM 99 (565)
T ss_dssp CCBHHHHHHHHHHHTTCCCEEECCCGGGHHHHHHHHHHCSSCEEECSSHHHHHHHHHHHHHHHTSCEEEEECTTHHHHTT
T ss_pred CcCHHHHHHHHHHHcCCCEEEECCCcchHHHHHHHHhCCCcEEEecCcHHHHHHHHHHHHHHhCCCeEEEECCCCCHHHH
Confidence 38999999999999999999999999999999999865567899999999999999999999999 99999999999999
Q ss_pred HHHHHHhhhcCCcEEEEeCCCCccccCCccceeeecCCCChHHHHHhhhcceeEEEEeCChhhHHHHHHHHHHHhHhcCC
Q 007800 105 LNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCFQAITCSQAVVNNLGDAHELIDTAISTALKESK 184 (589)
Q Consensus 105 ~~~l~~A~~~~~PllvI~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tk~~~~v~~~~~~~~~l~~A~~~a~~~~g 184 (589)
++||++|+.+++|||+|+|+++....+++..+||..| ++.+|..+|+++|||+.++.+++++++.|++||+.|.+++|
T Consensus 100 ~~gv~~A~~~~vPll~itg~~~~~~~~~~~~~~~~~q--~~d~q~~~~~~~~k~~~~v~~~~~~~~~i~~A~~~A~~~~G 177 (565)
T 2nxw_A 100 VNAVAGAYAEKSPVVVISGAPGTTEGNAGLLLHHQGR--TLDTQFQVFKEITVAQARLDDPAKAPAEIARVLGAARAQSR 177 (565)
T ss_dssp HHHHHHHHHTTCCEEEEEEECCTTCC--CCCC---------CHHHHHHTTSCSCEEECCCTTTHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHhhCCCEEEEeCCCChhhhccCcceeeecc--chhhHHHHHHhhheEEEEeCCHHHHHHHHHHHHHHHHhCCC
Confidence 9999999999999999999999987777665555443 22248999999999999999999999999999999998899
Q ss_pred cEEEEeCCCCCCCCCCCCCCCCCCccCCCCCCChhhHHHHHHHHHHHHHhcCCCEEEeCcccchhhHHHHHHHHHHHhCC
Q 007800 185 PVYISISCNLPGIPHPTFARDPVPFFLAPKVSNQLGLEAAVEATADFLNKAVKPVLVGGPNIRVAKAQKAFIELADATGY 264 (589)
Q Consensus 185 PV~i~iP~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~L~~a~rpviv~G~g~~~~~~~~~l~~lae~~~~ 264 (589)
||||+||.|++.. +.......+ .. ...+...+..+++++++|.+++||+|++|.|+.++++.+++.+|||++++
T Consensus 178 PV~l~iP~Dv~~~--~~~~~~~~~--~~--~~~~~~~~~~i~~~~~~l~~a~rpvIl~G~g~~~~~a~~~l~~lae~~~~ 251 (565)
T 2nxw_A 178 PVYLEIPRNMVNA--EVEPVGDDP--AW--PVDRDALAACADEVLAAMRSATSPVLMVCVEVRRYGLEAKVAELAQRLGV 251 (565)
T ss_dssp CEEEEEEGGGTTC--BCCCCCCCC--CC--CCCHHHHHHHHHHHHHHHHHCSSEEEEECHHHHHTTCHHHHHHHHHHHCS
T ss_pred CEEEECChhhhcC--cCCCccccC--CC--CCCchhhHHHHHHHHHHHHcCCCCEEEECCCcchhchHHHHHHHHHHhCC
Confidence 9999999999763 221111111 11 11123345678999999999999999999999988899999999999999
Q ss_pred ceEEccCCccCCCCCCCCceeeecCCCCCHHHHHHhhhcCEEEEeCCCcCCcccccccccCCCCceEEEcCCceeecCCC
Q 007800 265 PIAIMPSGKGLVPEHHPHFIGTYWGAVSSSFCGEIVESADAYVFVGPIFNDYSSVGYSLLIKKEKAIIVQPHRVTVGNGP 344 (589)
Q Consensus 265 Pv~tt~~~~g~~~~~~pl~~G~~~g~~~~~~~~~~l~~aD~vl~lG~~~~~~~~~~~~~~~~~~~~i~id~d~~~~~~~~ 344 (589)
||++|++|||.+|++||+++|.|.|..++..+++++++||+||.+|+++.+..+..|....+..++|+||.|+.+++ +.
T Consensus 252 Pv~~t~~~~g~~~~~~p~~~G~~~g~~~~~~~~~~l~~aDlvl~iG~~~~~~~~~~~~~~~~~~~~i~i~~d~~~~~-~~ 330 (565)
T 2nxw_A 252 PVVTTFMGRGLLADAPTPPLGTYIGVAGDAEITRLVEESDGLFLLGAILSDTNFAVSQRKIDLRKTIHAFDRAVTLG-YH 330 (565)
T ss_dssp CEEECGGGTTTTTTSSSCCSCBCCGGGSCHHHHHHHHTCSEEEEESCCBCSSTTSBCTTTSCGGGEEEEETTEEEET-TE
T ss_pred CEEECcccCccCCCCCCccccccCcccCCHHHHHHHHhCCEEEEECCCccccccccccccCCCCcEEEEeCCceeeC-Cc
Confidence 99999999999999999999987788889999999999999999999999888766654444568999999999987 55
Q ss_pred ccccccHHHHHHHHHHHhhcCchhhhhhhhhcCCCCCCCCCCCCCCcCHHHHHHHHHhhCCC--CCEE-EecCCcccccc
Q 007800 345 SLGWVFMADFLSALAKKLRKNTTALENYRRIYVPPGIPVKRAQNEPLRVNVLFKHIQDMLSG--DTAV-IAETGDSWFNC 421 (589)
Q Consensus 345 ~~~~~~~~~~l~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~L~~~l~~--~~ii-v~d~G~~~~~~ 421 (589)
...++.+..++++|.+.++.....|....+...+ ........++++..+++.|++.+++ ++++ ++|+|++.++.
T Consensus 331 ~~~~~~~~~~l~~L~~~l~~~~~~w~~~~~~~~~---~~~~~~~~~l~~~~v~~~l~~~l~~~~~~iv~~~d~G~~~~~~ 407 (565)
T 2nxw_A 331 TYADIPLAGLVDALLERLPPSDRTTRGKEPHAYP---TGLQADGEPIAPMDIARAVNDRVRAGQEPLLIAADMGDCLFTA 407 (565)
T ss_dssp EEESCCHHHHHHHHHHTSCCCCCCCCCSCSSCCC---CCCCCSSSBCCHHHHHHHHHHHHHTTCCCCEEEECSSHHHHHH
T ss_pred ccCCccHHHHHHHHHHhccccchhhhhhhhhhcc---ccccCCCCccCHHHHHHHHHHhcccccCCEEEEecchHHHHHH
Confidence 5566677889999988765432222111110000 0001123469999999999999999 9998 89999987554
Q ss_pred ccccccCCCeeEeccCccchhhHHHHHHHHhhhcCCCcEEEEEcchhhcccHHHHHHHHHhCCCeEEEEEeCCchhhhhh
Q 007800 422 QKLRLPENCGYEFQMQYGSIGWSVGATLGYAQAAKDKRVIACIGDGSFQVTAQEISTMIRCGQRSIIFLINNGGYTIEVE 501 (589)
Q Consensus 422 ~~~~~~~~~~~~~~~~~g~mG~~l~~aiGaala~~~~~vv~i~GDGsf~~~~~el~ta~~~~l~v~ivv~nN~~~~~~~~ 501 (589)
.++ ++.+++.++++|+||+++|+|+|+++|.|+++||+++|||+|+|+++||+|++++++|+++||+||++|++.+.
T Consensus 408 ~~~---~~~~~~~~~~~g~mG~~l~~A~G~ala~~~~~vv~i~GDG~~~~~~~~l~ta~~~~l~~~ivv~nN~~~~~~~~ 484 (565)
T 2nxw_A 408 MDM---IDAGLMAPGYYAGMGFGVPAGIGAQCVSGGKRILTVVGDGAFQMTGWELGNCRRLGIDPIVILFNNASWEMLRT 484 (565)
T ss_dssp TTS---CCSCEECCTTTCCTTCHHHHHHHHHHHTTTCCEEEEEEHHHHHHHGGGGGGHHHHTCCCEEEEEECSBCHHHHH
T ss_pred HhC---CCcEEEccCccccccccchHHHHHHHhCCCCcEEEEEechHHHhhHHHHHHHHHhCCCCEEEEEECCCCcEEee
Confidence 444 44458999999999999999999999999999999999999999999999999999999999999999999443
Q ss_pred hc-CCCCCCCCCCChHHHHHHccCCCCCccEEEeCCHHHHHHHHHHhhhcCCCCeE-EEEEEcCCCCChHHHHHHHHHhh
Q 007800 502 IH-DGPYNVIKNWDYTGLVNAIHNGEGKCWTAKVRSEDELTEAMKTATGEQKDSLC-FIEVFVHKDDTSKELLEWGSRVS 579 (589)
Q Consensus 502 ~~-~~~~~~~~~~d~~~la~a~G~~~~~~~~~~v~~~~~l~~al~~a~~~~~~gp~-viev~~~~~~~~~~~~~~~~~~~ 579 (589)
.+ ...+.++..+||.++|++||+ ++++|++.++|+++|+++++ .+||. ||||.|++++.++.++++.+.++
T Consensus 485 ~~~~~~~~~~~~~d~~~~a~a~G~-----~~~~v~~~~el~~al~~a~~--~~gp~~liev~~~~~~~~~~~~~~~~~~~ 557 (565)
T 2nxw_A 485 FQPESAFNDLDDWRFADMAAGMGG-----DGVRVRTRAELKAALDKAFA--TRGRFQLIEAMIPRGVLSDTLARFVQGQK 557 (565)
T ss_dssp HCTTCGGGBCCCCCHHHHTGGGTS-----EEEEECBHHHHHHHHHHHHH--CCSSCEEEEEECCTTCCCHHHHHHHHHHH
T ss_pred ecccCCCCcCCCCCHHHHHHHcCC-----CEEEeCCHHHHHHHHHHHHh--cCCCeEEEEEEcccccCCHHHHHHHHHHH
Confidence 32 234566678999999999999 99999999999999999986 67887 99999999999999999999988
Q ss_pred hhcCCCC
Q 007800 580 AANSRPP 586 (589)
Q Consensus 580 ~~~~~~~ 586 (589)
..+.+++
T Consensus 558 ~~~~~~~ 564 (565)
T 2nxw_A 558 RLHAAPR 564 (565)
T ss_dssp HC-----
T ss_pred HhhcccC
Confidence 7766543
No 7
>3eya_A Pyruvate dehydrogenase [cytochrome]; pyruvate oxidase, membrane-associated flavoprotein dehydrogenase, interactions with lipids cell membrane; HET: TDP FAD; 2.50A {Escherichia coli} PDB: 3ey9_A*
Probab=100.00 E-value=6.6e-89 Score=750.81 Aligned_cols=516 Identities=18% Similarity=0.214 Sum_probs=429.5
Q ss_pred cccHHHHHHHHHHHcCCCEEEecCCcchHHHHHhhhcCCCCeEEecCchhHHHHhhhhhhhccCc-eEEEEeCCcchHHH
Q 007800 26 VGTLGRHLARRLVEIGAKDVFSVPGDFNLTLLDHLIAEPELNLVGCCNELNAGYAADGYARSRGV-GACVVTFTVGGLSV 104 (589)
Q Consensus 26 ~~~~a~~i~~~L~~~GV~~vfg~pG~~~~~l~~al~~~~~i~~v~~~hE~~A~~~A~gyar~tg~-~v~~~t~GpG~~n~ 104 (589)
.++++|+|++.|+++||++|||+||+++.+|+++|.++++|++|.++||++|+|||+||||+||+ +||++|+|||++|+
T Consensus 2 ~~~~a~~l~~~L~~~GV~~vfg~PG~~~~~l~dal~~~~~i~~i~~~~E~~Aa~~A~GyAr~tg~~~v~~~TsGpG~~N~ 81 (549)
T 3eya_A 2 KQTVAAYIAKTLESAGVKRIWGVTGDSLNGLSDSLNRMGTIEWMSTRHEEVAAFAAGAEAQLSGELAVCAGSCGPGNLHL 81 (549)
T ss_dssp CCBHHHHHHHHHHHTTCCEEEECCCGGGHHHHHHHHHHCSSEEEECSSHHHHHHHHHHHHHHHSSCEEEEECTTHHHHTT
T ss_pred CccHHHHHHHHHHHCCCCEEEEcCCCchHHHHHHHHhcCCCeEEEeCChHHHHHHHHHHHHHhCCCEEEEeCCCCcHhhh
Confidence 47999999999999999999999999999999999876789999999999999999999999999 99999999999999
Q ss_pred HHHHHHhhhcCCcEEEEeCCCCccccCCccceeeecCCCChHHHHHhhhcceeEEEEeCChhhHHHHHHHHHHHhHhcCC
Q 007800 105 LNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCFQAITCSQAVVNNLGDAHELIDTAISTALKESK 184 (589)
Q Consensus 105 ~~~l~~A~~~~~PllvI~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tk~~~~v~~~~~~~~~l~~A~~~a~~~~g 184 (589)
++||++||.+++|||+|+|+++....+++ .. |..||.++|+++|||+.++.+++++++.|++|++.|.+++|
T Consensus 82 ~~gi~~A~~~~vPvl~itg~~~~~~~~~~-----~~---Q~~d~~~~~~~~tk~~~~v~~~~~~~~~i~~A~~~A~~~~G 153 (549)
T 3eya_A 82 INGLFDCHRNHVPVLAIAAHIPSSEIGSG-----YF---QETHPQELFRECSHYCELVSSPEQIPQVLAIAMRKAVLNRG 153 (549)
T ss_dssp HHHHHHHHHTTCCEEEEEEESCGGGTTSC-----CT---TCCCHHHHTSTTCSEEEECCSGGGHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHhhCCCEEEEeCCCchhhcCCC-----CC---CccCHHHHHhhhhheEEEeCCHHHHHHHHHHHHHHHhhCCC
Confidence 99999999999999999999999876654 22 23578999999999999999999999999999999999899
Q ss_pred cEEEEeCCCCCCCCCCCCCCCCCCccCCCCCCChhhHHHHHHHHHHHHHhcCCCEEEeCcccchhhHHHHHHHHHHHhCC
Q 007800 185 PVYISISCNLPGIPHPTFARDPVPFFLAPKVSNQLGLEAAVEATADFLNKAVKPVLVGGPNIRVAKAQKAFIELADATGY 264 (589)
Q Consensus 185 PV~i~iP~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~L~~a~rpviv~G~g~~~~~~~~~l~~lae~~~~ 264 (589)
||||+||.|++..+.+.... ...... ..+...+.++.+++++++|.+||||+|++|.|+. ++.+++.+|+|++++
T Consensus 154 PV~l~iP~dv~~~~~~~~~~-~~~~~~--~~~~~~~~~~~i~~~~~~l~~A~rpvIl~G~g~~--~a~~~l~~lae~~~~ 228 (549)
T 3eya_A 154 VSVVVLPGDVALKPAPEGAT-MHWYHA--PQPVVTPEEEELRKLAQLLRYSSNIALMCGSGCA--GAHKELVEFAGKIKA 228 (549)
T ss_dssp EEEEEEEHHHHTSBCCTTCC-CCCCCC--CCCEEECCHHHHHHHHHHHHTCCSEEEEECGGGT--TCHHHHHHHHHHHTC
T ss_pred CEEEEeChhHhhcccCcccc-cccccc--CCCCCCCCHHHHHHHHHHHHhCCCcEEEECCCch--HHHHHHHHHHHHhCC
Confidence 99999999998742221110 000001 1111123467899999999999999999999984 578999999999999
Q ss_pred ceEEccCCccCCCCCCCCceeeecCCCCCHHHHHHhhhcCEEEEeCCCcCCcccccccccCCCCceEEEcCCceeecCCC
Q 007800 265 PIAIMPSGKGLVPEHHPHFIGTYWGAVSSSFCGEIVESADAYVFVGPIFNDYSSVGYSLLIKKEKAIIVQPHRVTVGNGP 344 (589)
Q Consensus 265 Pv~tt~~~~g~~~~~~pl~~G~~~g~~~~~~~~~~l~~aD~vl~lG~~~~~~~~~~~~~~~~~~~~i~id~d~~~~~~~~ 344 (589)
||++|++|||.||++||+++|.+ |..++..+++++++||+||.||+++++.. .+.++.++||||.|+.+++ +.
T Consensus 229 Pv~~t~~gkg~~~~~hp~~~G~~-G~~~~~~~~~~~~~aDlvl~iG~~~~~~~-----~~~~~~~~i~id~d~~~~~-~~ 301 (549)
T 3eya_A 229 PIVHALRGKEHVEYDNPYDVGMT-GLIGFSSGFHTMMNADTLVLLGTQFPYRA-----FYPTDAKIIQIDINPASIG-AH 301 (549)
T ss_dssp CEEECGGGHHHHSSSCTTBCCCC-STTSCHHHHHHHHHCSEEEEESCCCCCGG-----GSCSSSEEEEEESCGGGTT-SS
T ss_pred CEEECCccCcCCCCCCcccccCC-CCCCCHHHHHHHHhCCEEEEECCCCCccc-----cCCCCCeEEEEeCCHHHhC-CC
Confidence 99999999999999999999996 88888899999999999999999886331 1234678999999999886 33
Q ss_pred ccc----cccHHHHHHHHHHHhhcCch--hhhhhhhhcC---CCCCCCCCCCCCCcCHHHHHHHHHhhCCCCCEEEecCC
Q 007800 345 SLG----WVFMADFLSALAKKLRKNTT--ALENYRRIYV---PPGIPVKRAQNEPLRVNVLFKHIQDMLSGDTAVIAETG 415 (589)
Q Consensus 345 ~~~----~~~~~~~l~~L~~~l~~~~~--~~~~~~~~~~---~~~~~~~~~~~~~i~~~~~~~~L~~~l~~~~iiv~d~G 415 (589)
+.. ..|++.+|++|.+.+..... +...|.+... ..........+.++++..+++.|++.++++++++.|+|
T Consensus 302 ~~~~~~i~~d~~~~l~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~ivv~d~G 381 (549)
T 3eya_A 302 SKVDMALVGDIKSTLRALLPLVEEKADRKFLDKALEDYRDARKGLDDLAKPSEKAIHPQYLAQQISHFAADDAIFTCDVG 381 (549)
T ss_dssp SCCSEEEECCHHHHHHHHGGGSCCCCCCHHHHHHHHHHHHHHHHHHHTSCCCSSCBCHHHHHHHHHHHSCTTCEEEECTT
T ss_pred CCCCeEEEeCHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHHHhhhcCCCCCCcCHHHHHHHHHhhCCCCCEEEEcCc
Confidence 222 24899999999888764321 2222221100 00000001123579999999999999999999999999
Q ss_pred cccccc-ccccccCCCeeEeccCccchhhHHHHHHHHhhhcCCCcEEEEEcchhhcccHHHHHHHHHhCCCeEEEEEeCC
Q 007800 416 DSWFNC-QKLRLPENCGYEFQMQYGSIGWSVGATLGYAQAAKDKRVIACIGDGSFQVTAQEISTMIRCGQRSIIFLINNG 494 (589)
Q Consensus 416 ~~~~~~-~~~~~~~~~~~~~~~~~g~mG~~l~~aiGaala~~~~~vv~i~GDGsf~~~~~el~ta~~~~l~v~ivv~nN~ 494 (589)
++.+|. .++..+++.+++.+.++|+||+++|+|+|++++.|+++||+++|||+|+|+++||+|++++++|+++||+||+
T Consensus 382 ~~~~~~~~~~~~~~~~~~~~~~~~g~mG~~l~~AiGaala~~~~~vv~i~GDGs~~~~~~~L~ta~~~~l~~~ivv~nN~ 461 (549)
T 3eya_A 382 TPTVWAARYLKMNGKRRLLGSFNHGSMANAMPQALGAQATEPERQVVAMCGDGGFSMLMGDFLSVVQMKLPVKIVVFNNS 461 (549)
T ss_dssp HHHHHHHHHCCCCSSCEEECCTTTCCTTCHHHHHHHHHHHSTTSCEEEEEEHHHHHHTGGGHHHHHHTTCCCEEEEEECS
T ss_pred HHHHHHHHhCccCCCCcEEeCCCCchhhhHHHHHHHHHHhCCCCcEEEEEccchhhccHHHHHHHHHhCCCeEEEEEeCC
Confidence 998775 3455666677999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhhhh-h----cCCCCCCCCCCChHHHHHHccCCCCCccEEEeCCHHHHHHHHHHhhhcCCCCeEEEEEEcCCCCCh
Q 007800 495 GYTIEVE-I----HDGPYNVIKNWDYTGLVNAIHNGEGKCWTAKVRSEDELTEAMKTATGEQKDSLCFIEVFVHKDDTS 568 (589)
Q Consensus 495 ~~~~~~~-~----~~~~~~~~~~~d~~~la~a~G~~~~~~~~~~v~~~~~l~~al~~a~~~~~~gp~viev~~~~~~~~ 568 (589)
+|++.+. . ....++++.++||.++|++||+ ++++|+++++|+++|+++++ .+||+||||.|++++.+
T Consensus 462 ~~g~~~~~~~~~~~~~~~~~~~~~d~~~~a~a~G~-----~~~~v~~~~~l~~al~~a~~--~~gp~liev~~~~~~~~ 533 (549)
T 3eya_A 462 VLGFVAMEMKAGGYLTDGTELHDTNFARIAEACGI-----TGIRVEKASEVDEALQRAFS--IDGPVLVDVVVAKEELA 533 (549)
T ss_dssp BCCCC------------CCBCCCCCHHHHHHHTTS-----EEEEECSGGGHHHHHHHHHH--SSSCEEEEEEBCCCCSC
T ss_pred ccHHHHHHHHhcCCCCcCCcCCCCCHHHHHHHcCC-----cEEEeCCHHHHHHHHHHHHh--CCCCEEEEEEecccccc
Confidence 9998211 1 1124556788999999999999 99999999999999999997 78999999999987754
No 8
>1ybh_A Acetolactate synthase, chloroplast; acetohydroxyacid synthase, herbicide, sulfonylurea, thiamin diphosphate, FAD, inhibitor; HET: CIE NHE FAD P22; 2.50A {Arabidopsis thaliana} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1yhy_A* 1yhz_A* 1yi0_A* 1yi1_A* 1z8n_A* 3ea4_A* 3e9y_A*
Probab=100.00 E-value=1.3e-87 Score=746.69 Aligned_cols=522 Identities=18% Similarity=0.237 Sum_probs=432.2
Q ss_pred CcccHHHHHHHHHHHcCCCEEEecCCcchHHHHHhhhcCCCCeEEecCchhHHHHhhhhhhhccCc-eEEEEeCCcchHH
Q 007800 25 SVGTLGRHLARRLVEIGAKDVFSVPGDFNLTLLDHLIAEPELNLVGCCNELNAGYAADGYARSRGV-GACVVTFTVGGLS 103 (589)
Q Consensus 25 ~~~~~a~~i~~~L~~~GV~~vfg~pG~~~~~l~~al~~~~~i~~v~~~hE~~A~~~A~gyar~tg~-~v~~~t~GpG~~n 103 (589)
+.++++++|++.|+++||++|||+||+++.+|+++|.++++|++|.++||++|+|||+||||+||+ +||++|+|||++|
T Consensus 10 ~~~~~a~~l~~~L~~~GV~~vfg~PG~~~~~l~~al~~~~~i~~i~~~~E~~Aa~~A~Gyar~tg~p~v~~~TsGpG~~N 89 (590)
T 1ybh_A 10 QPRKGADILVEALERQGVETVFAYPGGASMEIHQALTRSSSIRNVLPRHEQGGVFAAEGYARSSGKPGICIATSGPGATN 89 (590)
T ss_dssp CCEEHHHHHHHHHHTTTCCEEEECCCGGGHHHHHHHHHCSSCEECCCSSHHHHHHHHHHHHHHHSSCEEEEECTTHHHHT
T ss_pred CCccHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHhccCCccEEeeCCHHHHHHHHHHHHHHHCCCEEEEeccCchHHH
Confidence 347999999999999999999999999999999999876789999999999999999999999999 9999999999999
Q ss_pred HHHHHHHhhhcCCcEEEEeCCCCccccCCccceeeecCCCChHHHHHhhhcceeEEEEeCChhhHHHHHHHHHHHhHhc-
Q 007800 104 VLNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCFQAITCSQAVVNNLGDAHELIDTAISTALKE- 182 (589)
Q Consensus 104 ~~~~l~~A~~~~~PllvI~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tk~~~~v~~~~~~~~~l~~A~~~a~~~- 182 (589)
+++||++|+.+++|||+|+|+++....+.+ .. |..||..+++++|||+.++.+++++++.+++|++.|.++
T Consensus 90 ~~~gv~~A~~~~vPll~itg~~~~~~~g~~-----~~---Q~~d~~~~~~~~~k~~~~v~~~~~i~~~l~~A~~~a~~~~ 161 (590)
T 1ybh_A 90 LVSGLADALLDSVPLVAITGQVPRRMIGTD-----AF---QETPIVEVTRSITKHNYLVMDVEDIPRIIEEAFFLATSGR 161 (590)
T ss_dssp THHHHHHHHHHTCCEEEEEEECCGGGTTTT-----CT---TCCCHHHHHGGGSSEEEECCCGGGHHHHHHHHHHHHHSSS
T ss_pred HHHHHHHHHhhCCCEEEEeCcCCccccCCC-----cc---cccCHHHHHHHHhCeEEecCCHHHHHHHHHHHHHHHhhCC
Confidence 999999999999999999999999876654 22 345789999999999999999999999999999999986
Q ss_pred CCcEEEEeCCCCCCCCCCCCCCCCCCcc-CCCCCCChhhHHHHHHHHHHHHHhcCCCEEEeCcccchhhHHHHHHHHHHH
Q 007800 183 SKPVYISISCNLPGIPHPTFARDPVPFF-LAPKVSNQLGLEAAVEATADFLNKAVKPVLVGGPNIRVAKAQKAFIELADA 261 (589)
Q Consensus 183 ~gPV~i~iP~dv~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~~~~~~L~~a~rpviv~G~g~~~~~~~~~l~~lae~ 261 (589)
||||||+||.|++..+.+...+...... ..+.. ...+..+.+++++++|.+++||+|++|.++.+++ +++.+|||+
T Consensus 162 ~GPV~l~iP~dv~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~~~~~~l~~a~rpvIl~G~g~~~~~--~~l~~lae~ 238 (590)
T 1ybh_A 162 PGPVLVDVPKDIQQQLAIPNWEQAMRLPGYMSRM-PKPPEDSHLEQIVRLISESKKPVLYVGGGCLNSS--DELGRFVEL 238 (590)
T ss_dssp CCEEEEEEEHHHHHCEECCCTTCCCCCHHHHHHS-CCCCCHHHHHHHHHHHHHCSSEEEEECGGGTTCH--HHHHHHHHH
T ss_pred CceEEEEeCcchhhhhcccccccccccccCCCCC-CCCCCHHHHHHHHHHHHhCCCcEEEECcccccCH--HHHHHHHHH
Confidence 7999999999997532111101100000 00000 0011356799999999999999999999998865 999999999
Q ss_pred hCCceEEccCCccCCCCCCCCceeeecCCCCCHHHHHHhhhcCEEEEeCCCcCCcccccccccCCCCceEEEcCCceeec
Q 007800 262 TGYPIAIMPSGKGLVPEHHPHFIGTYWGAVSSSFCGEIVESADAYVFVGPIFNDYSSVGYSLLIKKEKAIIVQPHRVTVG 341 (589)
Q Consensus 262 ~~~Pv~tt~~~~g~~~~~~pl~~G~~~g~~~~~~~~~~l~~aD~vl~lG~~~~~~~~~~~~~~~~~~~~i~id~d~~~~~ 341 (589)
+++||++|++|||.||++||+++|.+ |..+...+++++++||+||.||+++++..+..+..+.++.++||||.|+.+++
T Consensus 239 ~~~Pv~~t~~g~g~~~~~hp~~~G~~-g~~~~~~~~~~l~~aDlvl~iG~~~~~~~~~~~~~~~~~~~~i~id~d~~~~~ 317 (590)
T 1ybh_A 239 TGIPVASTLMGLGSYPADDELSLHML-GMHGTVYANYAVEHSDLLLAFGVRFDDRVTGKLEAFASRAKIVHIDIDSAEIG 317 (590)
T ss_dssp HCCCEEECTTTTTSSCTTSTTEEEEC-STTSCHHHHHHHHHCSEEEEESCCCCHHHHSSGGGTTTTSEEEEEESCTTTTT
T ss_pred hCCCEEEchhhcCcCCCCCchhcCCc-ccccCHHHHHHHHhCCEEEEEcCCCCccccCcccccCCCCeEEEEECCHHHhC
Confidence 99999999999999999999999995 78888899999999999999999998776666666666779999999999886
Q ss_pred CCCccc----cccHHHHHHHHHHHhhcCc--------hhhhhhhhhcCCCCCCCCCCCCCCcCHHHHHHHHHhhCCCCCE
Q 007800 342 NGPSLG----WVFMADFLSALAKKLRKNT--------TALENYRRIYVPPGIPVKRAQNEPLRVNVLFKHIQDMLSGDTA 409 (589)
Q Consensus 342 ~~~~~~----~~~~~~~l~~L~~~l~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~L~~~l~~~~i 409 (589)
+.+.. ..|++.+|++|.+.+.... .++..+.+.+....... ...+.++++..+++.|++.++++++
T Consensus 318 -~~~~~~~~i~~d~~~~l~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~l~~~lp~~~i 395 (590)
T 1ybh_A 318 -KNKTPHVSVCGDVKLALQGMNKVLENRAEELKLDFGVWRNELNVQKQKFPLSF-KTFGEAIPPQYAIKVLDELTDGKAI 395 (590)
T ss_dssp -SSSCCSEEEESCHHHHHHHHHHHHHHTHHHHCCCCHHHHHHHHHHHHHSCCCC-CCCTTBCCHHHHHHHHHHHTTTCCE
T ss_pred -CCcCCCeEEecCHHHHHHHHHHhhhccccccccchHHHHHHHHHHHHhhhhhc-ccccCCcCHHHHHHHHHHhCCCCCE
Confidence 33322 2488999999988775421 11111111110000000 1123468999999999999999999
Q ss_pred EEecCCcccccc-ccccccCCCeeEeccCccchhhHHHHHHHHhhhcCCCcEEEEEcchhhcccHHHHHHHHHhCCCeEE
Q 007800 410 VIAETGDSWFNC-QKLRLPENCGYEFQMQYGSIGWSVGATLGYAQAAKDKRVIACIGDGSFQVTAQEISTMIRCGQRSII 488 (589)
Q Consensus 410 iv~d~G~~~~~~-~~~~~~~~~~~~~~~~~g~mG~~l~~aiGaala~~~~~vv~i~GDGsf~~~~~el~ta~~~~l~v~i 488 (589)
+++|+|++..|. .++..+++.+|+.++++|+||+++|+|+|+++|.|+++||+++|||+|+|+++||+|++++++|+++
T Consensus 396 vv~d~G~~~~~~~~~~~~~~~~~~~~~g~~G~~G~~l~~AiGaala~~~~~vv~i~GDGs~~~~~~~L~ta~~~~l~~~i 475 (590)
T 1ybh_A 396 ISTGVGQHQMWAAQFYNYKKPRQWLSSGGLGAMGFGLPAAIGASVANPDAIVVDIDGDGSFIMNVQELATIRVENLPVKV 475 (590)
T ss_dssp EEECSSHHHHHHHHSCCCSSTTSEECCCSSCCTTCHHHHHHHHHHHCTTSCEEEEEEHHHHHHTTTHHHHHHHTTCCEEE
T ss_pred EEEcCcHHHHHHHHhcccCCCCeEEeCCCcccccchHHHHHHHHHhCCCCcEEEEEccchhhccHHHHHHHHHhCCCcEE
Confidence 999999987554 4555666667999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeCCchhhhhh----hcCCCC--CCC--------CCCChHHHHHHccCCCCCccEEEeCCHHHHHHHHHHhhhcCCCC
Q 007800 489 FLINNGGYTIEVE----IHDGPY--NVI--------KNWDYTGLVNAIHNGEGKCWTAKVRSEDELTEAMKTATGEQKDS 554 (589)
Q Consensus 489 vv~nN~~~~~~~~----~~~~~~--~~~--------~~~d~~~la~a~G~~~~~~~~~~v~~~~~l~~al~~a~~~~~~g 554 (589)
||+||++|++... .++..+ +.+ .++||.++|++||+ ++++|+++++|+++|+++++ .+|
T Consensus 476 vv~NN~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~d~~~~a~a~G~-----~~~~v~~~~el~~al~~a~~--~~g 548 (590)
T 1ybh_A 476 LLLNNQHLGMVMQWEDRFYKANRAHTFLGDPAQEDEIFPNMLLFAAACGI-----PAARVTKKADLREAIQTMLD--TPG 548 (590)
T ss_dssp EEEECSBCHHHHHHHHHHSTTCCCSCBCSCGGGTTSCSSCHHHHHHHTTC-----CEEEECBHHHHHHHHHHHHH--SSS
T ss_pred EEEECCcchHHHHHHHHhcCCccccccccccccccCCCCCHHHHHHHcCC-----eEEEeCCHHHHHHHHHHHHh--CCC
Confidence 9999999999322 222222 222 25899999999999 89999999999999999997 789
Q ss_pred eEEEEEEcCCCCC
Q 007800 555 LCFIEVFVHKDDT 567 (589)
Q Consensus 555 p~viev~~~~~~~ 567 (589)
|+||||.|++.+.
T Consensus 549 p~liev~~~~~~~ 561 (590)
T 1ybh_A 549 PYLLDVICPHQEH 561 (590)
T ss_dssp CEEEEEECCTTCC
T ss_pred CEEEEEEecCCcc
Confidence 9999999998764
No 9
>4feg_A Pyruvate oxidase; carbanion, structure activity relationship, oxidation-reduct umpolung, thiamine diphosphate, reaction intermediate; HET: TDM FAD GOL; 1.09A {Lactobacillus plantarum} PDB: 4fee_A* 1y9d_A* 2ez9_A* 2ez4_A* 2ez8_A* 2ezt_A* 2ezu_A* 1pow_A* 1pox_A*
Probab=100.00 E-value=1.7e-87 Score=746.62 Aligned_cols=517 Identities=17% Similarity=0.230 Sum_probs=429.5
Q ss_pred cccHHHHHHHHHHHcCCCEEEecCCcchHHHHHhhhcC-CCCeEEecCchhHHHHhhhhhhhccCc-eEEEEeCCcchHH
Q 007800 26 VGTLGRHLARRLVEIGAKDVFSVPGDFNLTLLDHLIAE-PELNLVGCCNELNAGYAADGYARSRGV-GACVVTFTVGGLS 103 (589)
Q Consensus 26 ~~~~a~~i~~~L~~~GV~~vfg~pG~~~~~l~~al~~~-~~i~~v~~~hE~~A~~~A~gyar~tg~-~v~~~t~GpG~~n 103 (589)
.++++++|++.|+++||++|||+||+++.+|+++|.++ ++|++|.++||++|+|||+||||+||+ +||++|+|||++|
T Consensus 10 ~~~~a~~l~~~L~~~GV~~vfg~PG~~~~~l~dal~~~~~~i~~i~~~hE~~Aa~aA~GyAr~tg~~gv~~~TsGpG~~N 89 (603)
T 4feg_A 10 NILAGAAVIKVLEAWGVDHLYGIPGGSINSIMDALSAERDRIHYIQVRHEEVGAMAAAADAKLTGKIGVCFGSAGPGGTH 89 (603)
T ss_dssp EEEHHHHHHHHHHHTTCCEEEECCCGGGHHHHHHHHHTTTTSEEEECSSHHHHHHHHHHHHHHHSSCEEEEECTTHHHHT
T ss_pred eeeHHHHHHHHHHHCCCCEEEEeCCCchHHHHHHHHhccCCCeEEEecChHHHHHHHHHHHHHhCCceEEEecCCchHHH
Confidence 48999999999999999999999999999999999875 589999999999999999999999999 9999999999999
Q ss_pred HHHHHHHhhhcCCcEEEEeCCCCccccCCccceeeecCCCChHHHHHhhhcceeEEEEeCChhhHHHHHHHHHHHhHhcC
Q 007800 104 VLNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCFQAITCSQAVVNNLGDAHELIDTAISTALKES 183 (589)
Q Consensus 104 ~~~~l~~A~~~~~PllvI~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tk~~~~v~~~~~~~~~l~~A~~~a~~~~ 183 (589)
+++||++||.+++|||+|+|+++....+++ .+| ..||..+|+++|||+.++.+++++++.|++||+.|.+++
T Consensus 90 ~~~gia~A~~~~vPvl~itG~~~~~~~~~~-----~~Q---~~d~~~~~~~~tk~~~~v~~~~~~~~~i~~A~~~A~~~~ 161 (603)
T 4feg_A 90 LMNGLYDAREDHVPVLALIGQFGTTGMNMD-----TFQ---EMNENPIYADVADYNVTAVNAATLPHVIDEAIRRAYAHQ 161 (603)
T ss_dssp THHHHHHHHHTTCCEEEEEEECCTTTTTSC-----CTT---CCCCGGGGTTTCSEEEECCCSTTHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCCEEEEecCCcccccCCC-----ccc---cccHHHHhhhhceEEEEcCCHHHHHHHHHHHHHHHhcCC
Confidence 999999999999999999999999876654 222 346789999999999999999999999999999999989
Q ss_pred CcEEEEeCCCCCCCCCCCCCCCCCCccCCCCCCChhhHHHHHHHHHHHHHhcCCCEEEeCcccchhhHHHHHHHHHHHhC
Q 007800 184 KPVYISISCNLPGIPHPTFARDPVPFFLAPKVSNQLGLEAAVEATADFLNKAVKPVLVGGPNIRVAKAQKAFIELADATG 263 (589)
Q Consensus 184 gPV~i~iP~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~L~~a~rpviv~G~g~~~~~~~~~l~~lae~~~ 263 (589)
|||||+||.|++..+.+... .+.+...........+.+..+++++++|.+||||+|++|.|+ .++.+++.+|+|+++
T Consensus 162 GPV~l~iP~dv~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~i~~~~~~l~~A~rPvIl~G~g~--~~a~~~l~~lae~~~ 238 (603)
T 4feg_A 162 GVAVVQIPVDLPWQQIPAED-WYASANSYQTPLLPEPDVQAVTRLTQTLLAAERPLIYYGIGA--RKAGKELEQLSKTLK 238 (603)
T ss_dssp SEEEEEEETTGGGSEEETTT-CCCCGGGCCCCCCCBCCHHHHHHHHHHHHHCSSEEEEECGGG--TTCHHHHHHHHHHHT
T ss_pred CCEEEEeChhhhhccCCccc-ccccccccCCCCCCCCCHHHHHHHHHHHhcCCCeEEEECCCc--hhHHHHHHHHHHHHC
Confidence 99999999999874211110 010010100011113346689999999999999999999999 468899999999999
Q ss_pred CceEEccCCccCCCCCCCCceeeecCCCCCHHHHHHhhhcCEEEEeCCCcCCcccccc-cccCCCCceEEEcCCceeecC
Q 007800 264 YPIAIMPSGKGLVPEHHPHFIGTYWGAVSSSFCGEIVESADAYVFVGPIFNDYSSVGY-SLLIKKEKAIIVQPHRVTVGN 342 (589)
Q Consensus 264 ~Pv~tt~~~~g~~~~~~pl~~G~~~g~~~~~~~~~~l~~aD~vl~lG~~~~~~~~~~~-~~~~~~~~~i~id~d~~~~~~ 342 (589)
+||++|++|||.||++||+++|.+ |..+++.+++++++||+||.||++++.. .| ..+.++.++||||.|+.+++
T Consensus 239 ~PV~~t~~gkg~~~~~hp~~~G~~-g~~~~~~~~~~l~~aDlvl~iG~~~~~~---~~~~~~~~~~~~i~id~d~~~~~- 313 (603)
T 4feg_A 239 IPLMSTYPAKGIVADRYPAYLGSA-NRVAQKPANEALAQADVVLFVGNNYPFA---EVSKAFKNTRYFLQIDIDPAKLG- 313 (603)
T ss_dssp CCEEECGGGTTSSCTTCTTBCCCC-SSSSCHHHHHHHHHCSEEEEESCCCTTT---TTTTTTTTCSEEEEEESCGGGTT-
T ss_pred CCEEEcCccccCCCCCChhhcccC-cccCcHHHHHHHHhCCEEEEECCCCCcc---cccccCCCCCeEEEEeCCHHHhC-
Confidence 999999999999999999999996 7888999999999999999999998742 23 23445679999999999887
Q ss_pred CCcccc----ccHHHHHHHHHHHhhcCch--hhhhhhhh---cCCCCCCCCCCCCCCcCHHHHHHHHHhhCCCCCEEEec
Q 007800 343 GPSLGW----VFMADFLSALAKKLRKNTT--ALENYRRI---YVPPGIPVKRAQNEPLRVNVLFKHIQDMLSGDTAVIAE 413 (589)
Q Consensus 343 ~~~~~~----~~~~~~l~~L~~~l~~~~~--~~~~~~~~---~~~~~~~~~~~~~~~i~~~~~~~~L~~~l~~~~iiv~d 413 (589)
+.+..+ .|++.+|++|.+.+..... ++..|.+. +...........+.++++..+++.|.+.++++++++.|
T Consensus 314 ~~~~~~~~i~~D~~~~l~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~l~~~~ivv~d 393 (603)
T 4feg_A 314 KRHKTDIAVLADAQKTLAAILAQVSERESTPWWQANLANVKNWRAYLASLEDKQEGPLQAYQVLRAVNKIAEPDAIYSID 393 (603)
T ss_dssp SSSCCSEEEESCHHHHHHHHHHTCCCCCCCHHHHHHHHHHHHHHHHHHHHHTCCSSBCCHHHHHHHHHHHCCTTCEEEEC
T ss_pred CccCCCEEEEeCHHHHHHHHHHhhhccCChHHHHHHHHHHHHHHHHhhhhhcCCCCCcCHHHHHHHHHHhCCCCCEEEEC
Confidence 333322 4899999999988764321 22222110 00000000112345799999999999999999999999
Q ss_pred CCcccccc-ccccccCCCeeEeccCccchhhHHHHHHHHhhhcCCCcEEEEEcchhhcccHHHHHHHHHhCCCeEEEEEe
Q 007800 414 TGDSWFNC-QKLRLPENCGYEFQMQYGSIGWSVGATLGYAQAAKDKRVIACIGDGSFQVTAQEISTMIRCGQRSIIFLIN 492 (589)
Q Consensus 414 ~G~~~~~~-~~~~~~~~~~~~~~~~~g~mG~~l~~aiGaala~~~~~vv~i~GDGsf~~~~~el~ta~~~~l~v~ivv~n 492 (589)
+|++..|. .++..+.+.+++.+.++++||+++|+|+|++++.|+++||+++|||+|+|+++||+|++++++|+++||+|
T Consensus 394 ~G~~~~~~~~~~~~~~~~~~~~~~~~g~~G~~l~~A~Gaala~~~~~vv~~~GDG~~~~~~~~l~~a~~~~lp~~~vv~n 473 (603)
T 4feg_A 394 VGDINLNANRHLKLTPSNRHITSNLFATMGVGIPGAIAAKLNYPERQVFNLAGDGGASMTMQDLATQVQYHLPVINVVFT 473 (603)
T ss_dssp SSHHHHHHHHHCCCCTTCEEECCCSSCCTTCHHHHHHHHHHHCTTSCEEEEEEHHHHHHHGGGHHHHHHTTCCCEEEEEE
T ss_pred CchHHHHHHHhceeCCCCceecCcccccccchhHHHhhHHHhCCCCcEEEEeccHHHhhhHHHHHHHHHHCcCeEEEEEE
Confidence 99997664 45566666779999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCchhhhhh----hcCC-CC-CCCCCCChHHHHHHccCCCCCccEEEeCCHHHHHHHHHHhh--hcCCCCeEEEEEEcCC
Q 007800 493 NGGYTIEVE----IHDG-PY-NVIKNWDYTGLVNAIHNGEGKCWTAKVRSEDELTEAMKTAT--GEQKDSLCFIEVFVHK 564 (589)
Q Consensus 493 N~~~~~~~~----~~~~-~~-~~~~~~d~~~la~a~G~~~~~~~~~~v~~~~~l~~al~~a~--~~~~~gp~viev~~~~ 564 (589)
|++|++.+. .... .+ +.+..+||.++|++||+ ++++|+++++|+++|++++ + .+||+||||.+++
T Consensus 474 N~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~a~a~G~-----~~~~v~~~~~l~~al~~a~~~~--~~gP~lIev~~~~ 546 (603)
T 4feg_A 474 NCQYGFIKDEQEDTNQNDFIGVEFNDIDFSKIADGVHM-----QAFRVNKIEQLPDVFEQAKAIA--QHEPVLIDAVITG 546 (603)
T ss_dssp CSBCHHHHHHHHHHCSSCCCSSBCCCCCHHHHHHHTTC-----EEEEECBGGGHHHHHHHHHHHT--TTSCEEEEEECCC
T ss_pred CCchHHHHHHHHHhcCCCcccCcCCCCCHHHHHHHCCC-----eEEEECCHHHHHHHHHHHHHhc--CCCcEEEEEEeCC
Confidence 999998221 1122 22 34578999999999999 9999999999999999998 6 8899999999976
Q ss_pred C
Q 007800 565 D 565 (589)
Q Consensus 565 ~ 565 (589)
.
T Consensus 547 ~ 547 (603)
T 4feg_A 547 D 547 (603)
T ss_dssp C
T ss_pred C
Confidence 4
No 10
>1ozh_A ALS, acetolactate synthase, catabolic; acetohydroxyacid synthase, thiamin diphosphate, lyase; HET: PGE HE3; 2.00A {Klebsiella pneumoniae} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1ozg_A* 1ozf_A*
Probab=100.00 E-value=2.2e-87 Score=740.75 Aligned_cols=516 Identities=16% Similarity=0.200 Sum_probs=428.3
Q ss_pred ccHHHHHHHHHHHcCCCEEEecCCcchHHHHHhhhcCCCCeEEecCchhHHHHhhhhhhhccCc-eEEEEeCCcchHHHH
Q 007800 27 GTLGRHLARRLVEIGAKDVFSVPGDFNLTLLDHLIAEPELNLVGCCNELNAGYAADGYARSRGV-GACVVTFTVGGLSVL 105 (589)
Q Consensus 27 ~~~a~~i~~~L~~~GV~~vfg~pG~~~~~l~~al~~~~~i~~v~~~hE~~A~~~A~gyar~tg~-~v~~~t~GpG~~n~~ 105 (589)
++++++|++.|+++||++|||+||+.+.+|+++|.+ ++|++|.++||++|+|||+||||+||+ +||++|+|||++|++
T Consensus 11 ~~~a~~l~~~L~~~GV~~vfg~PG~~~~~l~~al~~-~~i~~v~~~~E~~Aa~~A~Gyar~tg~p~v~~~TsGpG~~N~~ 89 (566)
T 1ozh_A 11 AHGADLVVSQLEAQGVRQVFGIPGAKIDKVFDSLLD-SSIRIIPVRHEANAAFMAAAVGRITGKAGVALVTSGPGCSNLI 89 (566)
T ss_dssp SCHHHHHHHHHHHHTCCEEEEECCTTTHHHHHHGGG-SSSEEEECSSHHHHHHHHHHHHHHHSSCEEEEECSTHHHHTTH
T ss_pred CcHHHHHHHHHHHCCCCEEEEcCCCchHHHHHHHHh-CCCcEEEeCCHHHHHHHHHHHHHHHCCCEEEEEccChHHHHHH
Confidence 789999999999999999999999999999999987 689999999999999999999999999 999999999999999
Q ss_pred HHHHHhhhcCCcEEEEeCCCCccccCCccceeeecCCCChHHHHHhhhcceeEEEEeCChhhHHHHHHHHHHHhHhc-CC
Q 007800 106 NAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCFQAITCSQAVVNNLGDAHELIDTAISTALKE-SK 184 (589)
Q Consensus 106 ~~l~~A~~~~~PllvI~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tk~~~~v~~~~~~~~~l~~A~~~a~~~-~g 184 (589)
+||++|+.+++|||+|+|+++....+++. . |..||..+++++|||+.++.+++++++.+++||+.|.++ ||
T Consensus 90 ~~l~~A~~~~vPll~itg~~~~~~~~~~~-----~---Q~~d~~~~~~~~tk~~~~v~~~~~~~~~i~~A~~~A~~~r~G 161 (566)
T 1ozh_A 90 TGMATANSEGDPVVALGGAVKRADKAKQV-----H---QSMDTVAMFSPVTKYAIEVTAPDALAEVVSNAFRAAEQGRPG 161 (566)
T ss_dssp HHHHHHHHHTCCEEEEEEECCTTTC--------------CCCHHHHHGGGCSEEEECCSGGGHHHHHHHHHHHHHSSSCC
T ss_pred HHHHHHHhcCCCEEEEeCCCccccCCCCc-----c---cccCHHHHHHHHhheEEEcCCHHHHHHHHHHHHHHHhcCCCC
Confidence 99999999999999999999998665541 2 345789999999999999999999999999999999987 69
Q ss_pred cEEEEeCCCCCCCCCCCCCCCCCCccCCCCCCChhhHHHHHHHHHHHHHhcCCCEEEeCcccchhhHHHHHHHHHHHhCC
Q 007800 185 PVYISISCNLPGIPHPTFARDPVPFFLAPKVSNQLGLEAAVEATADFLNKAVKPVLVGGPNIRVAKAQKAFIELADATGY 264 (589)
Q Consensus 185 PV~i~iP~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~L~~a~rpviv~G~g~~~~~~~~~l~~lae~~~~ 264 (589)
||||+||.|++.. +............. .. .+..+.+++++++|.+++||+|++|.++.++++.+++.+|+|++++
T Consensus 162 PV~l~iP~dv~~~--~~~~~~~~~~~~~~-~~--~~~~~~i~~~~~~l~~a~rpvil~G~g~~~~~a~~~l~~lae~~~~ 236 (566)
T 1ozh_A 162 SAFVSLPQDVVDG--PVSGKVLPASGAPQ-MG--AAPDDAIDQVAKLIAQAKNPIFLLGLMASQPENSKALRRLLETSHI 236 (566)
T ss_dssp EEEEEEEHHHHHS--CEEECCCCCCCSCE-EC--CSCHHHHHHHHHHHHHCSSEEEEECGGGGSGGGHHHHHHHHHHHCC
T ss_pred eEEEEeChhhhhc--cccccccccccccC-CC--CCCHHHHHHHHHHHHcCCCeEEEECCCcccccHHHHHHHHHHHHCC
Confidence 9999999998653 21111000000000 01 1235679999999999999999999999998999999999999999
Q ss_pred ceEEccCCccCCCCCCC-CceeeecCCCCCHHHHHHhhhcCEEEEeCCCcCCcccccccccCCCCceEEEcCCceeecCC
Q 007800 265 PIAIMPSGKGLVPEHHP-HFIGTYWGAVSSSFCGEIVESADAYVFVGPIFNDYSSVGYSLLIKKEKAIIVQPHRVTVGNG 343 (589)
Q Consensus 265 Pv~tt~~~~g~~~~~~p-l~~G~~~g~~~~~~~~~~l~~aD~vl~lG~~~~~~~~~~~~~~~~~~~~i~id~d~~~~~~~ 343 (589)
||++|+++||.+|++|| +++|.+ |..+++.+++++++||+||.||+.+.+..+..|. .++.++||||.|+.+++ +
T Consensus 237 Pv~~t~~~kg~~~~~~p~~~~G~~-g~~~~~~~~~~l~~aDlvl~lG~~~~~~~~~~~~--~~~~~~i~id~d~~~~~-~ 312 (566)
T 1ozh_A 237 PVTSTYQAAGAVNQDNFSRFAGRV-GLFNNQAGDRLLQLADLVICIGYSPVEYEPAMWN--SGNATLVHIDVLPAYEE-R 312 (566)
T ss_dssp CEEECGGGTTTCCTTTCTTEEEEC-SSBTTCHHHHHHHHCSEEEEESCCGGGSCGGGTC--CSCSEEEEEESSCCCCB-T
T ss_pred CEEEccccCCcCCCCChHhhcCCC-cccCCHHHHHHHHhCCEEEEECCCCCcCCccccC--CCCCcEEEEeCCHHHhC-C
Confidence 99999999999999999 999997 8888888899999999999999965443333333 23568999999999887 3
Q ss_pred Cccc----cccHHHHHHHHHHHhhcCc---hhhhhhhhhcC--C-CCCCCCCCCCCC-cCHHHHHHHHHhhCCCCCEEEe
Q 007800 344 PSLG----WVFMADFLSALAKKLRKNT---TALENYRRIYV--P-PGIPVKRAQNEP-LRVNVLFKHIQDMLSGDTAVIA 412 (589)
Q Consensus 344 ~~~~----~~~~~~~l~~L~~~l~~~~---~~~~~~~~~~~--~-~~~~~~~~~~~~-i~~~~~~~~L~~~l~~~~iiv~ 412 (589)
.+.. ..|++.+|++|.+.+.... .|+..+.+.+. . .........+.+ +++..+++.|.+.++++++++.
T Consensus 313 ~~~~~~~i~~d~~~~l~~L~~~l~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~~l~~~l~~~~iv~~ 392 (566)
T 1ozh_A 313 NYTPDVELVGDIAGTLNKLAQNIDHRLVLSPQAAEILRDRQHQRELLDRRGAQLNQFALHPLRIVRAMQDIVNSDVTLTV 392 (566)
T ss_dssp TBCCSEEEESCHHHHHHHHHHTCCSCCCCCHHHHHHHHHHHHHHHHHHC-CCCCCCSSBCHHHHHHHHHHHCCTTEEEEE
T ss_pred CCCCCEEEEeCHHHHHHHHHHhccccCCcHHHHHHHHHHHHHhHhhhhhccccCCCCCcCHHHHHHHHHHhCCCCCEEEE
Confidence 3332 3489999999988775422 12222211100 0 000000122345 9999999999999999999999
Q ss_pred cCCcccccc-ccccccCCCeeEeccCccchhhHHHHHHHHhhhcCCCcEEEEEcchhhcccHHHHHHHHHhCCCeEEEEE
Q 007800 413 ETGDSWFNC-QKLRLPENCGYEFQMQYGSIGWSVGATLGYAQAAKDKRVIACIGDGSFQVTAQEISTMIRCGQRSIIFLI 491 (589)
Q Consensus 413 d~G~~~~~~-~~~~~~~~~~~~~~~~~g~mG~~l~~aiGaala~~~~~vv~i~GDGsf~~~~~el~ta~~~~l~v~ivv~ 491 (589)
|+|++..|. .++...++.+++.+.++|+||+++|+|+|++++.|+++||+++|||+|+|+++||+|++++++|+++||+
T Consensus 393 d~G~~~~~~~~~~~~~~~~~~~~~~g~g~mG~~l~~AiGaala~~~~~vv~i~GDG~~~~~~~~L~ta~~~~l~~~ivv~ 472 (566)
T 1ozh_A 393 DMGSFHIWIARYLYTFRARQVMISNGQQTMGVALPWAIGAWLVNPERKVVSVSGDGGFLQSSMELETAVRLKANVLHLIW 472 (566)
T ss_dssp CSSHHHHHHHHTGGGCCCSEEECCCTTCCTTCHHHHHHHHHHHSTTSEEEEEEEHHHHHHHTTHHHHHHHHTCCEEEEEE
T ss_pred cCcHHHHHHHHhcccCCCCeEEeCCCcccccchHHHHHHHHHhCCCCCEEEEEcChHHhccHHHHHHHHHhCCCcEEEEE
Confidence 999987654 4455566677999999999999999999999999999999999999999999999999999999999999
Q ss_pred eCCchhhhhh----hcCCCC-CCCCCCChHHHHHHccCCCCCccEEEeCCHHHHHHHHHHhhhcCCCCeEEEEEEcCCCC
Q 007800 492 NNGGYTIEVE----IHDGPY-NVIKNWDYTGLVNAIHNGEGKCWTAKVRSEDELTEAMKTATGEQKDSLCFIEVFVHKDD 566 (589)
Q Consensus 492 nN~~~~~~~~----~~~~~~-~~~~~~d~~~la~a~G~~~~~~~~~~v~~~~~l~~al~~a~~~~~~gp~viev~~~~~~ 566 (589)
||++|++.+. .++..| +++.++||.++|++||+ ++++|++.++|+++|+++++ .+||+||||.+++++
T Consensus 473 nN~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~a~a~G~-----~~~~v~~~~el~~al~~a~~--~~gp~liev~~~~~~ 545 (566)
T 1ozh_A 473 VDNGYNMVAIQEEKKYQRLSGVEFGPMDFKAYAESFGA-----KGFAVESAEALEPTLRAAMD--VDGPAVVAIPVDYRD 545 (566)
T ss_dssp ECSBCHHHHHHHHHHHSSCCSCBCCCCCHHHHHHTTTS-----EEEECCSGGGHHHHHHHHHH--SSSCEEEEEEBCCTT
T ss_pred ECCchhHHHHHHHHhcCCCccCcCCCCCHHHHHHHcCC-----eEEEeCCHHHHHHHHHHHHh--CCCCEEEEEEeCCCc
Confidence 9999999332 224445 46677999999999999 99999999999999999997 789999999999987
Q ss_pred C
Q 007800 567 T 567 (589)
Q Consensus 567 ~ 567 (589)
.
T Consensus 546 ~ 546 (566)
T 1ozh_A 546 N 546 (566)
T ss_dssp H
T ss_pred C
Confidence 7
No 11
>1t9b_A Acetolactate synthase, mitochondrial; acetohydroxyacid synthase, herbicide, sulfonylurea, thiamin diphosphate, FAD, inhibitor; HET: 1CS P25 FAD NSP P22 YF3; 2.20A {Saccharomyces cerevisiae} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1n0h_A* 1t9a_A* 1t9c_A* 1t9d_A* 1jsc_A*
Probab=100.00 E-value=5.9e-87 Score=747.00 Aligned_cols=522 Identities=20% Similarity=0.281 Sum_probs=430.3
Q ss_pred ccHHHHHHHHHHHcCCCEEEecCCcchHHHHHhhhcCCCCeEEecCchhHHHHhhhhhhhccCc-eEEEEeCCcchHHHH
Q 007800 27 GTLGRHLARRLVEIGAKDVFSVPGDFNLTLLDHLIAEPELNLVGCCNELNAGYAADGYARSRGV-GACVVTFTVGGLSVL 105 (589)
Q Consensus 27 ~~~a~~i~~~L~~~GV~~vfg~pG~~~~~l~~al~~~~~i~~v~~~hE~~A~~~A~gyar~tg~-~v~~~t~GpG~~n~~ 105 (589)
++++++|++.|+++||++|||+||+.+.+|+++|.++++|++|.++||++|+|||+||||+||+ +||++|+|||++|++
T Consensus 82 ~~~a~~lv~~L~~~GV~~vFg~PG~~~~pl~dal~~~~~i~~v~~~hE~~Aa~aAdGyAr~tGkpgvv~~TsGpG~~N~~ 161 (677)
T 1t9b_A 82 LTGGQIFNEMMSRQNVDTVFGYPGGAILPVYDAIHNSDKFNFVLPKHEQGAGHMAEGYARASGKPGVVLVTSGPGATNVV 161 (677)
T ss_dssp CBHHHHHHHHHHHTTCCEEEECCCGGGHHHHHHTTTCSSSEEECCSSHHHHHHHHHHHHHHHSSCEEEEECSTHHHHTTH
T ss_pred CCHHHHHHHHHHHcCCCEEEEecCccHHHHHHHHHhCCCCeEEEeCChHHHHHHHHHHHHHHCCCEEEEECCChHHHHHH
Confidence 7999999999999999999999999999999999876789999999999999999999999999 999999999999999
Q ss_pred HHHHHhhhcCCcEEEEeCCCCccccCCccceeeecCCCChHHHHHhhhcceeEEEEeCChhhHHHHHHHHHHHhHhc-CC
Q 007800 106 NAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCFQAITCSQAVVNNLGDAHELIDTAISTALKE-SK 184 (589)
Q Consensus 106 ~~l~~A~~~~~PllvI~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tk~~~~v~~~~~~~~~l~~A~~~a~~~-~g 184 (589)
+||++||.+++|||+|+|+++....+.+. + |..||..+++++|||+.++.+++++++.|++||++|.++ ||
T Consensus 162 ~gia~A~~d~vPllvItG~~~~~~~g~~a-----~---Q~~Dq~~i~~~~tk~~~~v~~~~~i~~~i~~A~~~A~~grpG 233 (677)
T 1t9b_A 162 TPMADAFADGIPMVVFTGQVPTSAIGTDA-----F---QEADVVGISRSCTKWNVMVKSVEELPLRINEAFEIATSGRPG 233 (677)
T ss_dssp HHHHHHHHHTCCEEEEEEECCTTTTTSCC-----T---TCCCHHHHTGGGSSEEEECCSGGGHHHHHHHHHHHHHSSSCC
T ss_pred HHHHHHHHcCCCEEEEeCCCChhhcCCCC-----c---cccCHHHHhhhheeEEEEcCCHHHHHHHHHHHHHHHhhCCCc
Confidence 99999999999999999999998776642 2 345789999999999999999999999999999999986 79
Q ss_pred cEEEEeCCCCCCCCC--CCCCCCCCCcc--CCCC-CCChhhHHHHHHHHHHHHHhcCCCEEEeCcccchh-hHHHHHHHH
Q 007800 185 PVYISISCNLPGIPH--PTFARDPVPFF--LAPK-VSNQLGLEAAVEATADFLNKAVKPVLVGGPNIRVA-KAQKAFIEL 258 (589)
Q Consensus 185 PV~i~iP~dv~~~~~--~~~~~~~~~~~--~~~~-~~~~~~~~~~i~~~~~~L~~a~rpviv~G~g~~~~-~~~~~l~~l 258 (589)
||||+||.|++..+. +.......+.. ..+. ........+.+++++++|.+++||+|++|.|+.++ .+.++|.+|
T Consensus 234 PV~l~lP~Dv~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~a~~~L~~AkrPvIl~G~g~~~~~~~~~~l~~l 313 (677)
T 1t9b_A 234 PVLVDLPKDVTAAILRNPIPTKTTLPSNALNQLTSRAQDEFVMQSINKAADLINLAKKPVLYVGAGILNHADGPRLLKEL 313 (677)
T ss_dssp EEEEEEEHHHHHSBCCSCBC--------------------CHHHHHHHHHHHHHTCSSEEEEECGGGGGSTTHHHHHHHH
T ss_pred eEEEEcCHHHhhhhcccccccccccccccccCCCccccccCCHHHHHHHHHHHHhCCCeEEEECcccccCchhHHHHHHH
Confidence 999999999865311 11000000000 0000 00011235679999999999999999999999876 467999999
Q ss_pred HHHhCCceEEccCCccCCCCCCCCceeeecCCCCCHHHHHHhhhcCEEEEeCCCcCCcccccccccCCCCc---------
Q 007800 259 ADATGYPIAIMPSGKGLVPEHHPHFIGTYWGAVSSSFCGEIVESADAYVFVGPIFNDYSSVGYSLLIKKEK--------- 329 (589)
Q Consensus 259 ae~~~~Pv~tt~~~~g~~~~~~pl~~G~~~g~~~~~~~~~~l~~aD~vl~lG~~~~~~~~~~~~~~~~~~~--------- 329 (589)
||++++||++|++|+|.||++||+++|.+ |..+...+++++++||+||.||+++++..+..+..+.++.+
T Consensus 314 ae~~~~PV~tt~~gkg~~~~~hpl~lG~~-G~~g~~~~~~~l~~aDlvl~iG~r~~~~~t~~~~~~~~~~~~~~~~~~~~ 392 (677)
T 1t9b_A 314 SDRAQIPVTTTLQGLGSFDQEDPKSLDML-GMHGCATANLAVQNADLIIAVGARFDDRVTGNISKFAPEARRAAAEGRGG 392 (677)
T ss_dssp HHHTTCCEEECGGGTTSSCTTSTTEEEEC-STTSCHHHHHHHHHCSEEEEESCCCCTTTSCSGGGSSHHHHHHHHTTSCE
T ss_pred HHHhCCCeeeccccCccCCCCCccccCcC-CccCcHHHHHHHhcCCEEEEECCccCcccccCccccCcccccccccCCce
Confidence 99999999999999999999999999985 78888889999999999999999999887766665555555
Q ss_pred eEEEcCCceeecCCCccc----cccHHHHHHHHHHHhhc-C-ch-hhhh---hhhhcCCCCCCCCCCCCCCcCHHHHHHH
Q 007800 330 AIIVQPHRVTVGNGPSLG----WVFMADFLSALAKKLRK-N-TT-ALEN---YRRIYVPPGIPVKRAQNEPLRVNVLFKH 399 (589)
Q Consensus 330 ~i~id~d~~~~~~~~~~~----~~~~~~~l~~L~~~l~~-~-~~-~~~~---~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 399 (589)
+||||+|+.+++ +.+.. ..|+..+|++|.+.+.. . .. |... |++.. +... .......++++..+++.
T Consensus 393 iI~idid~~~~~-~~~~~~~~i~gD~~~~l~~L~~~l~~~~~~~~w~~~~~~~~~~~-~~~~-~~~~~~~~l~~~~v~~~ 469 (677)
T 1t9b_A 393 IIHFEVSPKNIN-KVVQTQIAVEGDATTNLGKMMSKIFPVKERSEWFAQINKWKKEY-PYAY-MEETPGSKIKPQTVIKK 469 (677)
T ss_dssp EEEEESCGGGSS-SSSCCSEEEESCHHHHHHHHHTTSCCCCCCHHHHHHHHHHHHHS-CCCC-CCCCTTCCBCHHHHHHH
T ss_pred EEEEECCHHHhC-CcccCCEEEeCCHHHHHHHHHHHhhccccchHHHHHHHHHHHhc-cccc-ccccCCCCcCHHHHHHH
Confidence 999999999886 33222 34899999999888754 1 11 2222 22221 1111 11122356999999999
Q ss_pred HHhhC---CCCCEEEecCCcccccc-ccccccCCCeeEeccCccchhhHHHHHHHHhhhcCCCcEEEEEcchhhcccHHH
Q 007800 400 IQDML---SGDTAVIAETGDSWFNC-QKLRLPENCGYEFQMQYGSIGWSVGATLGYAQAAKDKRVIACIGDGSFQVTAQE 475 (589)
Q Consensus 400 L~~~l---~~~~iiv~d~G~~~~~~-~~~~~~~~~~~~~~~~~g~mG~~l~~aiGaala~~~~~vv~i~GDGsf~~~~~e 475 (589)
|++.+ +++.+++.|+|++..|. .++..+++.+|+.++++|+||+++|+|+|+++|.|+++||+++|||+|+|+++|
T Consensus 470 L~~~l~~~~~~~iv~~~vg~~~~~~~~~~~~~~p~~~~~sg~~G~mG~~lpaAiGaalA~p~~~Vv~i~GDGsf~~~~~e 549 (677)
T 1t9b_A 470 LSKVANDTGRHVIVTTGVGQHQMWAAQHWTWRNPHTFITSGGLGTMGYGLPAAIGAQVAKPESLVIDIDGDASFNMTLTE 549 (677)
T ss_dssp HHHHHHTTCSCEEEEECSSHHHHHHHHHSCCCSTTCEECCCSSCCTTCHHHHHHHHHHHCTTSEEEEEEEHHHHHHHGGG
T ss_pred HHHHhhcCCCCEEEEeCCchHHHHHHHhcccCCCCeEEeCCCcchhhchHHHHHHHHHhCCCCeEEEEEeehHHhccHHH
Confidence 99998 66778888999887654 445556667799999999999999999999999999999999999999999999
Q ss_pred HHHHHHhCCCeEEEEEeCCchhhhhh----hcCCCC--CCCCCCChHHHHHHccCCCCCccEEEeCCHHHHHHHHHHhhh
Q 007800 476 ISTMIRCGQRSIIFLINNGGYTIEVE----IHDGPY--NVIKNWDYTGLVNAIHNGEGKCWTAKVRSEDELTEAMKTATG 549 (589)
Q Consensus 476 l~ta~~~~l~v~ivv~nN~~~~~~~~----~~~~~~--~~~~~~d~~~la~a~G~~~~~~~~~~v~~~~~l~~al~~a~~ 549 (589)
|+|++++++|+++||+||++|++.+. .+...+ ..+.++||.++|++||+ ++++|++.++|+++|+++++
T Consensus 550 L~ta~~~~l~v~ivV~NN~~~g~~~~~~~~~~~~~~~~~~~~~~d~~~la~a~G~-----~~~~v~~~~el~~al~~a~~ 624 (677)
T 1t9b_A 550 LSSAVQAGTPVKILILNNEEQGMVTQWQSLFYEHRYSHTHQLNPDFIKLAEAMGL-----KGLRVKKQEELDAKLKEFVS 624 (677)
T ss_dssp HHHHHHHTCCCEEEEEECSSCHHHHHHHHHHSTTCCCSCCCCCCCHHHHHHHTTC-----EEEEECSHHHHHHHHHHHHH
T ss_pred HHHHHHhCCCeEEEEEeCCCchhhhhhhhhhcCCCcccCcCCCCCHHHHHHHcCC-----eEEEECCHHHHHHHHHHHHH
Confidence 99999999999999999999998332 223322 23567899999999999 99999999999999999997
Q ss_pred cCCCCeEEEEEEcCCCCC
Q 007800 550 EQKDSLCFIEVFVHKDDT 567 (589)
Q Consensus 550 ~~~~gp~viev~~~~~~~ 567 (589)
.+||+||||.|++...
T Consensus 625 --~~gp~lIev~~~~~~~ 640 (677)
T 1t9b_A 625 --TKGPVLLEVEVDKKVP 640 (677)
T ss_dssp --CSSCEEEEEEBCSSCC
T ss_pred --CCCcEEEEEEecCCcc
Confidence 7899999999998654
No 12
>2pgn_A Cyclohexane-1,2-dione hydrolase (CDH); three alpha/beta domains; HET: P6G FAD TPP; 1.20A {Azoarcus SP} PDB: 2pgo_A*
Probab=100.00 E-value=3.6e-87 Score=742.44 Aligned_cols=522 Identities=18% Similarity=0.235 Sum_probs=435.0
Q ss_pred cccHHHHHHHHHHHcCCCEEEecCCcchHHHHHhhhcC-CCCeEEecCchhHHHHhhhhhhhccCc-eEEEEeCCcchHH
Q 007800 26 VGTLGRHLARRLVEIGAKDVFSVPGDFNLTLLDHLIAE-PELNLVGCCNELNAGYAADGYARSRGV-GACVVTFTVGGLS 103 (589)
Q Consensus 26 ~~~~a~~i~~~L~~~GV~~vfg~pG~~~~~l~~al~~~-~~i~~v~~~hE~~A~~~A~gyar~tg~-~v~~~t~GpG~~n 103 (589)
.++++++|++.|+++||++|||+||+++.+|+++|.++ ++|++|.++||++|+|||+||||+||+ +||++|+|||++|
T Consensus 3 ~~~~a~~l~~~L~~~GV~~vfg~PG~~~~~l~~al~~~~~~i~~v~~~hE~~Aa~~A~GyAr~tg~p~v~~~TsGpG~~N 82 (589)
T 2pgn_A 3 IKRGADLIVEALEEYGTEQVVGFIGHTSHFVADAFSKSHLGKRVINPATELGGAWMVNGYNYVKDRSAAVGAWHCVGNLL 82 (589)
T ss_dssp EEEHHHHHHHHHHHTTCCEEEEECSGGGHHHHHHHHTSTTSTTCBCCSSHHHHHHHHHHHHHHHTSCCEEEEEEGGGGGG
T ss_pred CCcHHHHHHHHHHHcCCCEEEEecCCchHHHHHHHHhcCCCCeEEEeCcHHHHHHHHHHHHHHHCCCEEEEEecCchHHH
Confidence 57999999999999999999999999999999999876 679999999999999999999999999 9999999999999
Q ss_pred HHHHHHHhhhcCCcEEEEeCCCCccccCCccceeeecCCCChHHHHHhhhcceeEEEEeCChhhHHHHHHHHHHHhHhc-
Q 007800 104 VLNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCFQAITCSQAVVNNLGDAHELIDTAISTALKE- 182 (589)
Q Consensus 104 ~~~~l~~A~~~~~PllvI~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tk~~~~v~~~~~~~~~l~~A~~~a~~~- 182 (589)
+++||++||.+++|||+|+|+++....+++. . +|..||.. |+++|||+.++.+++++++.|++||+.|.++
T Consensus 83 ~~~gv~~A~~~~vPll~itg~~~~~~~~~~~-~------~Q~~d~~~-~~~~tk~~~~v~~~~~~~~~i~~A~~~A~~~~ 154 (589)
T 2pgn_A 83 LHAAMQEARTGRIPAVHIGLNSDGRLAGRSE-A------AQQVPWQS-FTPIARSTQRVERLDKVGEAIHEAFRVAEGHP 154 (589)
T ss_dssp CHHHHHHHHHTTCCEEEEEEESCGGGTTCTT-C------SSCCCGGG-GTTTSSEEEECCSGGGHHHHHHHHHHHHTSSS
T ss_pred HHHHHHHHHhcCCCEEEEecCCcccccCCCC-c------ccccChhh-ccccEEEEeecCCHHHHHHHHHHHHHHHhcCC
Confidence 9999999999999999999999998766541 1 12346788 9999999999999999999999999999987
Q ss_pred CCcEEEEeCCCCCCCCCCCCCCCCCCc-cCCCCCCChhhHHHHHHHHHHHHHhcCCCEEEeCcccchhhHHHHHHHHHHH
Q 007800 183 SKPVYISISCNLPGIPHPTFARDPVPF-FLAPKVSNQLGLEAAVEATADFLNKAVKPVLVGGPNIRVAKAQKAFIELADA 261 (589)
Q Consensus 183 ~gPV~i~iP~dv~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~~~~~~L~~a~rpviv~G~g~~~~~~~~~l~~lae~ 261 (589)
+|||||+||.|++..+.+.....+... ...+... .+. ..+++++++|.+++||+|++|.++.++++.+++.+|||+
T Consensus 155 ~GPV~l~iP~dv~~~~~~~~~~~~~~~~~~~~~~~--~~~-~~v~~~~~~l~~a~rpvIl~G~g~~~~~a~~~l~~lae~ 231 (589)
T 2pgn_A 155 AGPAYVDIPFDLTADQIDDKALVPRGATRAKSVLH--APN-EDVREAAAQLVAAKNPVILAGGGVARSGGSEALLKLAEM 231 (589)
T ss_dssp CCEEEEEEETHHHHCEEECTTTSCCCCCCCCCCCC--CCH-HHHHHHHHHHHHCSSEEEEECHHHHHHTCHHHHHHHHHH
T ss_pred CccEEEEeCHhhhhcccccccccccccccCCccCC--ChH-HHHHHHHHHHHhCCCeEEEECCCcccccHHHHHHHHHHH
Confidence 699999999998653111100001111 1111001 123 679999999999999999999999988899999999999
Q ss_pred hCCceEEccCCccCCCCCCCCceeeecCCCCCHHHHHHhhhcCEEEEeCCCcCCcccccccccCCCCceEEEcCCceeec
Q 007800 262 TGYPIAIMPSGKGLVPEHHPHFIGTYWGAVSSSFCGEIVESADAYVFVGPIFNDYSSVGYSLLIKKEKAIIVQPHRVTVG 341 (589)
Q Consensus 262 ~~~Pv~tt~~~~g~~~~~~pl~~G~~~g~~~~~~~~~~l~~aD~vl~lG~~~~~~~~~~~~~~~~~~~~i~id~d~~~~~ 341 (589)
+++||++|+++||.+|++||+++|. .|..+++.+++++++||+||.||+++.+..+. |..+.++.++||||.|+.+++
T Consensus 232 ~~~Pv~~t~~~~g~~~~~~p~~~G~-~g~~~~~~~~~~l~~aDlvl~iG~~~~~~~~~-~~~~~~~~~~i~id~d~~~~~ 309 (589)
T 2pgn_A 232 VGVPVVTTSTGAGVFPETHALAMGS-AGFCGWKSANDMMAAADFVLVLGSRLSDWGIA-QGYITKMPKFVHVDTDPAVLG 309 (589)
T ss_dssp HTCCEEECTTTTTSSCTTSTTEEEE-CSTTSCHHHHHHHHHCSEEEEESCCCCTTTTT-TTTTCCCCSEEEEESCGGGTT
T ss_pred hCCCEEEccccCccCCCCChhhcCC-ccccCCHHHHHHHhhCCEEEEECCCccccccc-ccccCCCCeEEEEeCCHHHHC
Confidence 9999999999999999999999999 48888888999999999999999999888776 766666779999999999886
Q ss_pred CCCccc----cccHHHHHHHHHHHhhc----C------chhhh---hhhh-hcCCCCCCCCCCCCCCcCHHHHHHHHHhh
Q 007800 342 NGPSLG----WVFMADFLSALAKKLRK----N------TTALE---NYRR-IYVPPGIPVKRAQNEPLRVNVLFKHIQDM 403 (589)
Q Consensus 342 ~~~~~~----~~~~~~~l~~L~~~l~~----~------~~~~~---~~~~-~~~~~~~~~~~~~~~~i~~~~~~~~L~~~ 403 (589)
+.+.. ..|++.+|++|.+.+.. . ...|. .+.+ .+. .........+.++++..+++.|++.
T Consensus 310 -~~~~~~~~i~~d~~~~l~~L~~~l~~~~~~~~~~~~~~~~w~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~l~~~ 387 (589)
T 2pgn_A 310 -TFYFPLLSVVADAKTFMEQLIEVLPGTSGFKAVRYQERENFRQATEFRAAWDG-WVREQESGDGMPASMFRAMAEVRKV 387 (589)
T ss_dssp -SSSCCSEEEECCHHHHHHHHHHHGGGSTTCCCCCGGGSTTHHHHHHHHHHHHH-HHHHHTCCCCSSCCHHHHHHHHHHT
T ss_pred -CCcCCCEEEEeCHHHHHHHHHHHhhhcccccccccccchhhccHHHHHHHHHH-HHhhhccCCCCCcCHHHHHHHHHHh
Confidence 33322 34899999999988752 1 11222 2222 110 0000000123469999999999999
Q ss_pred CCCCCEEEecCCcccccc-ccccccCCCeeEeccCccchhhHHHHHHHHhhhcCCCcEEEEEcchhhcccHHHHHHHHHh
Q 007800 404 LSGDTAVIAETGDSWFNC-QKLRLPENCGYEFQMQYGSIGWSVGATLGYAQAAKDKRVIACIGDGSFQVTAQEISTMIRC 482 (589)
Q Consensus 404 l~~~~iiv~d~G~~~~~~-~~~~~~~~~~~~~~~~~g~mG~~l~~aiGaala~~~~~vv~i~GDGsf~~~~~el~ta~~~ 482 (589)
++++++++.|+|++..|. .++..+++.+++.++++|+||+++|+|+|++++.|+++||+++|||+|+|+++||+|++++
T Consensus 388 l~~~~iv~~d~g~~~~~~~~~~~~~~~~~~~~~~g~g~mG~~l~~AiGaala~~~~~vv~i~GDG~~~~~~~~L~ta~~~ 467 (589)
T 2pgn_A 388 QRPEDIIVTDIGNHTLPMFGGAILQRPRRLVTSMAEGILGCGFPMALGAQLAEPNSRVFLGTGDGALYYHFNEFRVAVEH 467 (589)
T ss_dssp CCTTCEEEECSSTTHHHHHHHCCCSSTTCEESCTTTCCTTCHHHHHHHHHHHCTTSCEEEEEEHHHHHHHGGGHHHHHHT
T ss_pred CCCCCEEEEcCchHHHHHHHhcccCCCCcEECCCCcchhhhHHHHHHHHHHhCCCCcEEEEEeeHHHHhhHHHHHHHHHh
Confidence 999999999999987654 4455666677999999999999999999999999999999999999999999999999999
Q ss_pred CCCeEEEEEeCCchhhhhhh----cCCCC-CCCCCCChHHHHHHccCCCCCccEEEeCCHHHHHHHHHHhhhcCCCCeEE
Q 007800 483 GQRSIIFLINNGGYTIEVEI----HDGPY-NVIKNWDYTGLVNAIHNGEGKCWTAKVRSEDELTEAMKTATGEQKDSLCF 557 (589)
Q Consensus 483 ~l~v~ivv~nN~~~~~~~~~----~~~~~-~~~~~~d~~~la~a~G~~~~~~~~~~v~~~~~l~~al~~a~~~~~~gp~v 557 (589)
++|+++||+||++|++.+.. ++..+ +.+.++||.++|++||+ ++++|++.++|+++|+++++ .+||.|
T Consensus 468 ~l~~~ivv~nN~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~a~a~G~-----~~~~v~~~~el~~al~~a~~--~~gp~l 540 (589)
T 2pgn_A 468 KLPVITMVFTNESYGANWTLMNHQFGQNNWTEFMNPDWVGIAKAFGA-----YGESVRETGDIAGALQRAID--SGKPAL 540 (589)
T ss_dssp TCCCEEEEEECSBCHHHHHHHHHHHSSCCSCBCCCCCHHHHHHHHTC-----EEEECTTTCCHHHHHHHHHH--HCSCEE
T ss_pred CCCeEEEEEECCCcccchHHHHhhcCCCccccCCCCCHHHHHHHCCC-----eEEEECCHHHHHHHHHHHHh--CCCCEE
Confidence 99999999999999994322 23333 45568999999999999 99999999999999999987 789999
Q ss_pred EEEEcCCCCChH
Q 007800 558 IEVFVHKDDTSK 569 (589)
Q Consensus 558 iev~~~~~~~~~ 569 (589)
|||.+++.+...
T Consensus 541 iev~~~~~~~~~ 552 (589)
T 2pgn_A 541 IEIPVSKTQGLA 552 (589)
T ss_dssp EEEECCSSSSTT
T ss_pred EEEEecCCCCcC
Confidence 999999877543
No 13
>2uz1_A Benzaldehyde lyase; thiamine diphosphate, thiamine pyrophosphate, benzoin, flavoprotein; HET: TPP; 1.65A {Pseudomonas fluorescens} PDB: 2ag1_A* 2ag0_A* 2uz1_B* 3iae_A* 3iaf_A* 3d7k_A*
Probab=100.00 E-value=3.9e-87 Score=739.23 Aligned_cols=520 Identities=21% Similarity=0.260 Sum_probs=433.1
Q ss_pred cccHHHHHHHHHHHcCCCEEEecCCcchHHHHHhhhcCCCCeEEecCchhHHHHhhhhhhhccCc-eEEEEeCCcchHHH
Q 007800 26 VGTLGRHLARRLVEIGAKDVFSVPGDFNLTLLDHLIAEPELNLVGCCNELNAGYAADGYARSRGV-GACVVTFTVGGLSV 104 (589)
Q Consensus 26 ~~~~a~~i~~~L~~~GV~~vfg~pG~~~~~l~~al~~~~~i~~v~~~hE~~A~~~A~gyar~tg~-~v~~~t~GpG~~n~ 104 (589)
.++++++|++.|+++||++|||+||+++.+|+++|.++ +|++|.++||++|+|||+||+|+||+ +||++|+|||++|+
T Consensus 3 ~~~~a~~l~~~L~~~GV~~vfg~PG~~~~~l~~al~~~-~i~~i~~~~E~~Aa~~A~Gyar~tg~p~v~~~TsGpG~~N~ 81 (563)
T 2uz1_A 3 MITGGELVVRTLIKAGVEHLFGLHGAHIDTIFQACLDH-DVPIIDTRHEAAAGHAAEGYARAGAKLGVALVTAGGGFTNA 81 (563)
T ss_dssp EEEHHHHHHHHHHHHTCCCEEECCCGGGHHHHHHHHHH-TCCEEECSSHHHHHHHHHHHHHHHTSCEEEEECTTHHHHTT
T ss_pred ccCHHHHHHHHHHHCCCCEEEECCCCchHHHHHHHHhc-CCcEEeeCCHHHHHHHHHHHHHHhCCCEEEEEccCccHHHH
Confidence 47999999999999999999999999999999999865 59999999999999999999999999 99999999999999
Q ss_pred HHHHHHhhhcCCcEEEEeCCCCccccCCccceeeecCCCCh-HHHHHhhhcceeEEEEeCChhhHHHHHHHHHHHhHhc-
Q 007800 105 LNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDF-TQELRCFQAITCSQAVVNNLGDAHELIDTAISTALKE- 182 (589)
Q Consensus 105 ~~~l~~A~~~~~PllvI~g~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~tk~~~~v~~~~~~~~~l~~A~~~a~~~- 182 (589)
++||++|+.+++|||+|+|+++....+++. . |. .||..+++++|||+.++.+++++++.+++|++.|.++
T Consensus 82 ~~~l~~A~~~~~Pll~itg~~~~~~~~~~~-----~---Q~~~d~~~~~~~~tk~~~~v~~~~~~~~~l~~A~~~a~~~~ 153 (563)
T 2uz1_A 82 VTPIANAWLDRTPVLFLTGSGALRDDETNT-----L---QAGIDQVAMAAPITKWAHRVMATEHIPRLVMQAIRAALSAP 153 (563)
T ss_dssp HHHHHHHHHHTCCEEEEEEECCGGGTTSCC-----T---TCCCCHHHHHGGGCSEEEECCCGGGHHHHHHHHHHHHHSSS
T ss_pred HHHHHHHHhcCCCEEEEeCCCCcccCCchh-----h---hhhccHHHHhhhhhceEEEcCCHHHHHHHHHHHHHHhcCCC
Confidence 999999999999999999999998766642 2 33 5789999999999999999999999999999999986
Q ss_pred CCcEEEEeCCCCCCCC-CCCCCCCCCCccCCCCCCChhhHHHHHHHHHHHHHhcCCCEEEeCcccchhhHHHHHHHHHHH
Q 007800 183 SKPVYISISCNLPGIP-HPTFARDPVPFFLAPKVSNQLGLEAAVEATADFLNKAVKPVLVGGPNIRVAKAQKAFIELADA 261 (589)
Q Consensus 183 ~gPV~i~iP~dv~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~L~~a~rpviv~G~g~~~~~~~~~l~~lae~ 261 (589)
+|||||+||.|+...+ .+.....+. ..... ....+..+.+++++++|.+++||+|++|.++.++++.+++.+|+|+
T Consensus 154 ~GPV~l~iP~dv~~~~~~~~~~~~~~-~~~~~--~~~~~~~~~v~~~~~~l~~a~rpvil~G~g~~~~~a~~~l~~lae~ 230 (563)
T 2uz1_A 154 RGPVLLDLPWDILMNQIDEDSVIIPD-LVLSA--HGARPDPADLDQALALLRKAERPVIVLGSEASRTARKTALSAFVAA 230 (563)
T ss_dssp CCCEEEEEEHHHHHCEEEGGGSCCCC-CCCCS--SCCBCCHHHHHHHHHHHHHCSSEEEEECHHHHHHTCHHHHHHHHHH
T ss_pred CceEEEEeCHHHhhhhcccccccccc-cccCC--CCCCCCHHHHHHHHHHHHcCCCcEEEECCccccccHHHHHHHHHHH
Confidence 6999999999953211 111100010 10100 0112235679999999999999999999999998899999999999
Q ss_pred hCCceEEccCCccCCCCC-CCCceeeecCCCCCHHHHHHhhhcCEEEEeCCCcCCcccccccccCC-CCceEEEcCCcee
Q 007800 262 TGYPIAIMPSGKGLVPEH-HPHFIGTYWGAVSSSFCGEIVESADAYVFVGPIFNDYSSVGYSLLIK-KEKAIIVQPHRVT 339 (589)
Q Consensus 262 ~~~Pv~tt~~~~g~~~~~-~pl~~G~~~g~~~~~~~~~~l~~aD~vl~lG~~~~~~~~~~~~~~~~-~~~~i~id~d~~~ 339 (589)
+++||++|+++||.||++ ||+++|.+ | .++..+++ ++++|+||.+|+++.+..+..|..+.+ +.++||||.|+.+
T Consensus 231 ~~~Pv~~t~~~~g~~~~~~~p~~~G~~-g-~~~~~~~~-~~~aDlvl~iG~~~~~~~~~~~~~~~~~~~~~i~id~d~~~ 307 (563)
T 2uz1_A 231 TGVPVFADYEGLSMLSGLPDAMRGGLV-Q-NLYSFAKA-DAAPDLVLMLGARFGLNTGHGSGQLIPHSAQVIQVDPDACE 307 (563)
T ss_dssp HCCCEEECGGGGGGGTTSCGGGEEEEG-G-GGGGTTTT-TCCCSEEEEESCCSSGGGTTTSCSSSCTTSEEEEECSCGGG
T ss_pred hCCcEEEcCcccCcCCCCCChhhcCCC-C-CCCHHHHh-hcCCCEEEEECCCCcccccccccccCCCCCeEEEEECCHHH
Confidence 999999999999999999 99999997 5 67777778 999999999999999888777776655 6799999999998
Q ss_pred ecCCCccc----cccHHHHHHHHHHHhhcC----c-hhh----hh-hhhhcCCCCCCCCCCCCCCcCHHHHHHHHHhhCC
Q 007800 340 VGNGPSLG----WVFMADFLSALAKKLRKN----T-TAL----EN-YRRIYVPPGIPVKRAQNEPLRVNVLFKHIQDMLS 405 (589)
Q Consensus 340 ~~~~~~~~----~~~~~~~l~~L~~~l~~~----~-~~~----~~-~~~~~~~~~~~~~~~~~~~i~~~~~~~~L~~~l~ 405 (589)
++ +.+.. ..|++.+|++|.+.++.. . ..| .. +++........ ..... ++++..+++.|++.++
T Consensus 308 ~~-~~~~~~~~i~~d~~~~l~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~~~~l~~~l~ 384 (563)
T 2uz1_A 308 LG-RLQGIALGIVADVGGTIEALAQATAQDAAWPDRGDWCAKVTDLAQERYASIAAK-SSSEH-ALHPFHASQVIAKHVD 384 (563)
T ss_dssp TT-SSSCCSEEECSCHHHHHHHHHHHHTTSCCCCCCHHHHHHHHHHHHHHHHHHHHH-CCCSS-SCCHHHHHHHHHTTCS
T ss_pred hC-CCCCCCeEEEcCHHHHHHHHHHhhhhcccccCcHHHHHHHHHHHHHHhHhhhhc-cccCC-CcCHHHHHHHHHHhCC
Confidence 86 33322 358999999999887642 1 112 12 22111000000 00112 6899999999999999
Q ss_pred CCCEEEecCCcccccc-ccccccCCCeeEeccCccchhhHHHHHHHHhhhc--CCCcEEEEEcchhhcccHHHHHHHHHh
Q 007800 406 GDTAVIAETGDSWFNC-QKLRLPENCGYEFQMQYGSIGWSVGATLGYAQAA--KDKRVIACIGDGSFQVTAQEISTMIRC 482 (589)
Q Consensus 406 ~~~iiv~d~G~~~~~~-~~~~~~~~~~~~~~~~~g~mG~~l~~aiGaala~--~~~~vv~i~GDGsf~~~~~el~ta~~~ 482 (589)
++++++.|+|++..|. .++..+++.+++.++++|+||+++|+|+|+++|. |+++||+++|||+|+|+++||+|++++
T Consensus 385 ~~~iv~~d~G~~~~~~~~~~~~~~~~~~~~~~g~g~~G~~l~~AiGaa~a~~~~~~~vv~i~GDG~~~~~~~~L~ta~~~ 464 (563)
T 2uz1_A 385 AGVTVVADGALTYLWLSEVMSRVKPGGFLCHGYLGSMGVGFGTALGAQVADLEAGRRTILVTGDGSVGYSIGEFDTLVRK 464 (563)
T ss_dssp TTEEEEECSSHHHHHHHHHHTTSCCSEEECCCTTCCTTTHHHHHHHHHHHHHHHTCEEEEEEEHHHHGGGTTHHHHHHHH
T ss_pred CCcEEEEcCchHHHHHHHhccccCCCeEECCCCCccccChHHHHHHHHHHhhCCCCeEEEEEccHHHhCCHHHHHHHHHh
Confidence 9999999999987654 4455666677999999999999999999999998 899999999999999999999999999
Q ss_pred CCCeEEEEEeCCchhhhhhh----cCC---CCCCCCCCChHHHHHHccCCCCCccEEEeCCHHHHHHHHHHhhhcCCCCe
Q 007800 483 GQRSIIFLINNGGYTIEVEI----HDG---PYNVIKNWDYTGLVNAIHNGEGKCWTAKVRSEDELTEAMKTATGEQKDSL 555 (589)
Q Consensus 483 ~l~v~ivv~nN~~~~~~~~~----~~~---~~~~~~~~d~~~la~a~G~~~~~~~~~~v~~~~~l~~al~~a~~~~~~gp 555 (589)
++|+++||+||++|++.+.. ++. .++.+.++||.++|++||+ ++++|++.++|+++|+++++ .+||
T Consensus 465 ~l~~~ivv~nN~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~a~a~G~-----~~~~v~~~~~l~~al~~a~~--~~gp 537 (563)
T 2uz1_A 465 QLPLIVIIMNNQSWGATLHFQQLAVGPNRVTGTRLENGSYHGVAAAFGA-----DGYHVDSVESFSAALAQALA--HNRP 537 (563)
T ss_dssp TCCCEEEEEECSBCHHHHHHHHHHTCTTCCCSCBCCCCCHHHHHHHTTC-----EEEEECSHHHHHHHHHHHHH--SSSC
T ss_pred CCCeEEEEEeCCcchHHHHHHHHhcCCCcccCCcCCCCCHHHHHHHcCC-----eEEEeCCHHHHHHHHHHHHH--CCCC
Confidence 99999999999999994321 222 2345577999999999999 99999999999999999997 7899
Q ss_pred EEEEEEcCCCCChHH
Q 007800 556 CFIEVFVHKDDTSKE 570 (589)
Q Consensus 556 ~viev~~~~~~~~~~ 570 (589)
+||||.+++++.++.
T Consensus 538 ~liev~~~~~~~~p~ 552 (563)
T 2uz1_A 538 ACINVAVALDPIPPE 552 (563)
T ss_dssp EEEEEECCSCCCCHH
T ss_pred EEEEEEeccccCCch
Confidence 999999998777654
No 14
>1q6z_A BFD, BFDC, benzoylformate decarboxylase; lyase, carbon-carbon, mandelate catabolism, T thiazolone diphosphate, inhibitor, high resolution; HET: TZD; 1.00A {Pseudomonas putida} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1po7_A* 1pi3_A* 3fsj_X* 1mcz_A* 1bfd_A* 2fwn_A* 3fzn_A* 2fn3_A* 2v3w_A* 1yno_A* 3f6b_X* 3f6e_X*
Probab=100.00 E-value=4.5e-86 Score=725.72 Aligned_cols=512 Identities=18% Similarity=0.218 Sum_probs=427.4
Q ss_pred cccHHHHHHHHHHHcCCCEEEecCCcchHHHHHhhhcCCCCeEEecCchhHHHHhhhhhhhccCc-eEEEEeCCcchHHH
Q 007800 26 VGTLGRHLARRLVEIGAKDVFSVPGDFNLTLLDHLIAEPELNLVGCCNELNAGYAADGYARSRGV-GACVVTFTVGGLSV 104 (589)
Q Consensus 26 ~~~~a~~i~~~L~~~GV~~vfg~pG~~~~~l~~al~~~~~i~~v~~~hE~~A~~~A~gyar~tg~-~v~~~t~GpG~~n~ 104 (589)
+++++++|++.|+++||++|||+||+++.+|+++|. ++|++|.++||++|+|||+||+|+||+ +||++|+|||++|+
T Consensus 1 ~~~~a~~l~~~L~~~GV~~vfg~PG~~~~~l~~al~--~~i~~i~~~~E~~Aa~~A~Gyar~tg~~~v~~~tsGpG~~N~ 78 (528)
T 1q6z_A 1 MASVHGTTYELLRRQGIDTVFGNPGSNALPFLKDFP--EDFRYILALQEACVVGIADGYAQASRKPAFINLHSAAGTGNA 78 (528)
T ss_dssp -CBHHHHHHHHHHHTTCCEEEECCCGGGHHHHTTCC--TTCEEEECSSHHHHHHHHHHHHHHHTSCEEEEEEHHHHHHHT
T ss_pred CCcHHHHHHHHHHHCCCCEEEECCCcchHHHHHHHh--hcCcEEEECcHHHHHHHHHHHHHHhCCCEEEEEcCChHHHHH
Confidence 368999999999999999999999999999999994 579999999999999999999999999 99999999999999
Q ss_pred HHHHHHhhhcCCcEEEEeCCCCccccCCccceeeecCCCChHHHHHhhhcceeEEEEeCChhhHHHHHHHHHHHhHhc-C
Q 007800 105 LNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCFQAITCSQAVVNNLGDAHELIDTAISTALKE-S 183 (589)
Q Consensus 105 ~~~l~~A~~~~~PllvI~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tk~~~~v~~~~~~~~~l~~A~~~a~~~-~ 183 (589)
++||++|+.+++|||+|+|+++....+++. .|+ ..||..+++++|||+.++.+++++++.+++|++.|.++ +
T Consensus 79 ~~~l~~A~~~~~Pll~itg~~~~~~~~~~~-----~q~--~~d~~~~~~~~~k~~~~v~~~~~~~~~i~~A~~~a~~~~~ 151 (528)
T 1q6z_A 79 MGALSNAWNSHSPLIVTAGQQTRAMIGVEA-----LLT--NVDAANLPRPLVKWSYEPASAAEVPHAMSRAIHMASMAPQ 151 (528)
T ss_dssp HHHHHHHHHTTCCEEEEEEECCHHHHTTTC-----TTC--CTTGGGSSTTSCSCEECCSSGGGHHHHHHHHHHHHHSSSC
T ss_pred HHHHHHHhhcCCCEEEEeCCCcccccCCCc-----ccc--cccHHHHHHHhhHhhhcCCCHHHHHHHHHHHHHHHhcCCC
Confidence 999999999999999999999998776652 221 14789999999999999999999999999999999986 7
Q ss_pred CcEEEEeCCCCCCCCCCCCCCCCCCccCCCCCCChhhHHHHHHHHHHHHHhcCCCEEEeCcccchhhHHHHHHHHHHHhC
Q 007800 184 KPVYISISCNLPGIPHPTFARDPVPFFLAPKVSNQLGLEAAVEATADFLNKAVKPVLVGGPNIRVAKAQKAFIELADATG 263 (589)
Q Consensus 184 gPV~i~iP~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~L~~a~rpviv~G~g~~~~~~~~~l~~lae~~~ 263 (589)
|||||+||.|++..+.+.. ............ ..+.++.+++++++|.+++||+|++|.++.++++.+++.+|+|+++
T Consensus 152 GPV~l~iP~d~~~~~~~~~-~~~~~~~~~~~~--~~~~~~~i~~~~~~l~~a~rpvil~G~g~~~~~a~~~l~~lae~~~ 228 (528)
T 1q6z_A 152 GPVYLSVPYDDWDKDADPQ-SHHLFDRHVSSS--VRLNDQDLDILVKALNSASNPAIVLGPDVDAANANADCVMLAERLK 228 (528)
T ss_dssp CCEEEEEEGGGTTSBCCGG-GGGGTTCCCCCC--CCCCHHHHHHHHHHHHHCSSCEEEECHHHHHTTCHHHHHHHHHHHT
T ss_pred CcEEEEechhhhhCccccc-cccccccCCCCC--CCCCHHHHHHHHHHHhcCCCeEEEECCccchhhHHHHHHHHHHHHC
Confidence 9999999999976421111 000000000001 1123567999999999999999999999998889999999999999
Q ss_pred Cce-EEccCCccCCCCCCCCceeeecCCCCCHHHHHHhhhcCEEEEeCCCcCCcccccccccC-CCCceEEEcCCceeec
Q 007800 264 YPI-AIMPSGKGLVPEHHPHFIGTYWGAVSSSFCGEIVESADAYVFVGPIFNDYSSVGYSLLI-KKEKAIIVQPHRVTVG 341 (589)
Q Consensus 264 ~Pv-~tt~~~~g~~~~~~pl~~G~~~g~~~~~~~~~~l~~aD~vl~lG~~~~~~~~~~~~~~~-~~~~~i~id~d~~~~~ 341 (589)
+|| +++.++||.+|++||+++|.+ | .+++.+++++++||+||.+|+++.+..+..|.... ++.++||||.|+.+++
T Consensus 229 ~Pv~~~~~~g~g~~~~~~p~~~G~~-g-~~~~~~~~~l~~aDlvl~iG~~~~~~~~~~~~~~~~~~~~~i~id~d~~~~~ 306 (528)
T 1q6z_A 229 APVWVAPSAPRCPFPTRHPCFRGLM-P-AGIAAISQLLEGHDVVLVIGAPVFRYHQYDPGQYLKPGTRLISVTCDPLEAA 306 (528)
T ss_dssp CCEEECSSCSBCCSCTTSTTEEEEC-C-SCHHHHHHHHTTCSEEEEESSCTTCCCSCCCSCSSCTTCEEEEEESCHHHHH
T ss_pred CCEEEeccCccccCCCCCccccCcC-C-CCcHHHHHHHhcCCEEEEECCCCccccccCcCCcCCCCCeEEEEeCCHHHhC
Confidence 999 778899999999999999997 6 77888999999999999999999988887776533 5679999999998876
Q ss_pred CCCccc----cccHHHHHHHHHHHhhcCchhhhhhhhhcCCCCCCCCCCCCCCcCHHHHHHHHHhhCCCCCEEEecCCcc
Q 007800 342 NGPSLG----WVFMADFLSALAKKLRKNTTALENYRRIYVPPGIPVKRAQNEPLRVNVLFKHIQDMLSGDTAVIAETGDS 417 (589)
Q Consensus 342 ~~~~~~----~~~~~~~l~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~L~~~l~~~~iiv~d~G~~ 417 (589)
+. .. ..|++.+|++|.+.++....++..|++. . ........++++..+++.|++.++++++++.|+|++
T Consensus 307 -~~-~~~~~i~~d~~~~l~~L~~~~~~~~~~~~~~~~~----~-~~~~~~~~~~~~~~~~~~l~~~l~~~~iv~~d~g~~ 379 (528)
T 1q6z_A 307 -RA-PMGDAIVADIGAMASALANLVEESSRQLPTAAPE----P-AKVDQDAGRLHPETVFDTLNDMAPENAIYLNESTST 379 (528)
T ss_dssp -HC-SSSEEEESCHHHHHHHHHHHSCCCCSCCCCCCCC----C-CCCCCCSSSBCHHHHHHHHHHHSCTTCEEEEECTTS
T ss_pred -CC-CCCeeEeCCHHHHHHHHHHHhhccccchHHHHhh----h-hcccccCCCcCHHHHHHHHHhhCCCCeEEEECCccc
Confidence 22 22 2489999999998875432221112111 0 011112347999999999999999999999999999
Q ss_pred ccccc-cccccCCCeeEeccCccchhhHHHHHHHHhhhcCCCcEEEEEcchhhcccHHHHHHHHHhCCCeEEEEEeCCch
Q 007800 418 WFNCQ-KLRLPENCGYEFQMQYGSIGWSVGATLGYAQAAKDKRVIACIGDGSFQVTAQEISTMIRCGQRSIIFLINNGGY 496 (589)
Q Consensus 418 ~~~~~-~~~~~~~~~~~~~~~~g~mG~~l~~aiGaala~~~~~vv~i~GDGsf~~~~~el~ta~~~~l~v~ivv~nN~~~ 496 (589)
..|.. ++...++.+++.+.+ |+||+++|+|+|++++.|+++||+++|||+|+|+++||+|++++++|+++||+||++|
T Consensus 380 ~~~~~~~~~~~~~~~~~~~~g-g~~G~~l~~A~G~a~a~~~~~vv~~~GDG~~~~~~~~l~~a~~~~l~~~ivv~nN~~~ 458 (528)
T 1q6z_A 380 TAQMWQRLNMRNPGSYYFCAA-GGLGFALPAAIGVQLAEPERQVIAVIGDGSANYSISALWTAAQYNIPTIFVIMNNGTY 458 (528)
T ss_dssp HHHHHHHCCCCSSSCEEECTT-CCTTSHHHHHHHHHHHCTTSCEEEEEEHHHHTTTGGGHHHHHHHTCCCEEEEEECSBC
T ss_pred HHHHHHhccccCCCcEECCCC-ccccchHHHHHHHHHhCCCCcEEEEECCcHHHhhHHHHHHHHHhCCCeEEEEEeCCcc
Confidence 87653 344455566999988 9999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhh----cCC--CCCCCCCCChHHHHHHccCCCCCccEEEeCCHHHHHHHHHHhhhcCCCCeEEEEEEcCCCC
Q 007800 497 TIEVEI----HDG--PYNVIKNWDYTGLVNAIHNGEGKCWTAKVRSEDELTEAMKTATGEQKDSLCFIEVFVHKDD 566 (589)
Q Consensus 497 ~~~~~~----~~~--~~~~~~~~d~~~la~a~G~~~~~~~~~~v~~~~~l~~al~~a~~~~~~gp~viev~~~~~~ 566 (589)
++.+.. +.. .+++++++||.++|++||+ ++++|++.++|+++|+++++ .+||+||||.+++++
T Consensus 459 ~~~~~~~~~~~~~~~~~~~~~~~d~~~~a~a~G~-----~~~~v~~~~~l~~al~~a~~--~~gp~liev~~~~~~ 527 (528)
T 1q6z_A 459 GALRWFAGVLEAENVPGLDVPGIDFRALAKGYGV-----QALKADNLEQLKGSLQEALS--AKGPVLIEVSTVSPV 527 (528)
T ss_dssp HHHHHHHHHHTCCSCCSCBCCCCCHHHHHHHHTC-----EEEEESSHHHHHHHHHHHHT--CSSCEEEEEEBCC--
T ss_pred hHhHHHHHHhcCCCcccCCCCCCCHHHHHHHcCC-----eEEEeCCHHHHHHHHHHHHH--CCCcEEEEEEecCCC
Confidence 993321 222 2345678999999999999 99999999999999999986 789999999999864
No 15
>1v5e_A Pyruvate oxidase; oxidoreductase, flavoprotein; HET: FAD; 1.60A {Aerococcus viridans} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 2dji_A* 1v5f_A* 1v5g_A*
Probab=100.00 E-value=1.8e-85 Score=728.49 Aligned_cols=514 Identities=17% Similarity=0.204 Sum_probs=428.1
Q ss_pred cccHHHHHHHHHHHcCCCEEEecCCcchHHHHHhhhcC-CCCeEEecCchhHHHHhhhhhhhccCc-eEEEEeCCcchHH
Q 007800 26 VGTLGRHLARRLVEIGAKDVFSVPGDFNLTLLDHLIAE-PELNLVGCCNELNAGYAADGYARSRGV-GACVVTFTVGGLS 103 (589)
Q Consensus 26 ~~~~a~~i~~~L~~~GV~~vfg~pG~~~~~l~~al~~~-~~i~~v~~~hE~~A~~~A~gyar~tg~-~v~~~t~GpG~~n 103 (589)
.++++++|++.|+++||++|||+||+++.+|+++|.++ ++|++|.++||++|+|||+||||+||+ +||++|+|||++|
T Consensus 3 ~~~~a~~lv~~L~~~GV~~vfg~PG~~~~~l~~al~~~~~~i~~i~~~~E~~Aa~~A~GyAr~tgk~~v~~~tsGpG~~N 82 (590)
T 1v5e_A 3 KINIGLAVMKILESWGADTIYGIPSGTLSSLMDAMGEEENNVKFLQVKHEEVGAMAAVMQSKFGGNLGVTVGSGGPGASH 82 (590)
T ss_dssp EEEHHHHHHHHHHHTTCCEEEECCCTTTHHHHTTSSSTTCCCEEEECSSHHHHHHHHHHHHHTTCCCCEEEECTTHHHHT
T ss_pred CccHHHHHHHHHHHcCCCEEEEecCCchHHHHHHHHhcCCCCeEEeeCCHHHHHHHHHHHHHHHCCCEEEEeCcChHHHH
Confidence 47899999999999999999999999999999999875 589999999999999999999999999 9999999999999
Q ss_pred HHHHHHHhhhcCCcEEEEeCCCCccccCCccceeeecCCCChHHHHHhhhcceeEEEEeCChhhHHHHHHHHHHHhHhc-
Q 007800 104 VLNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCFQAITCSQAVVNNLGDAHELIDTAISTALKE- 182 (589)
Q Consensus 104 ~~~~l~~A~~~~~PllvI~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tk~~~~v~~~~~~~~~l~~A~~~a~~~- 182 (589)
+++||++|+.+++|||+|+|+++....+++ .. |..||.++++++|||+.++.+++++++.+++||++|.++
T Consensus 83 ~~~gl~~A~~~~vPll~Itg~~p~~~~g~~-----~~---Q~~d~~~~~~~~tk~~~~v~~~~~~~~~i~~A~~~A~~~~ 154 (590)
T 1v5e_A 83 LINGLYDAAMDNIPVVAILGSRPQRELNMD-----AF---QELNQNPMYDHIAVYNRRVAYAEQLPKLVDEAARMAIAKR 154 (590)
T ss_dssp THHHHHHHHHHTCCEEEEEEECCGGGTTTT-----CT---TCCCCHHHHHTTCSEEEECCSGGGHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhcCCCEEEEcCCCCcccCCCC-----cc---cccCHHHHHHhhccEEEEeCCHHHHHHHHHHHHHHHhcCC
Confidence 999999999999999999999999866654 22 234689999999999999999999999999999999997
Q ss_pred CCcEEEEeCCCCCCCCCCCCCC--C--CCCccCCCCCCChhhHHHHHHHHHHHHHhcCCCEEEeCcccchhhHHHHHHHH
Q 007800 183 SKPVYISISCNLPGIPHPTFAR--D--PVPFFLAPKVSNQLGLEAAVEATADFLNKAVKPVLVGGPNIRVAKAQKAFIEL 258 (589)
Q Consensus 183 ~gPV~i~iP~dv~~~~~~~~~~--~--~~~~~~~~~~~~~~~~~~~i~~~~~~L~~a~rpviv~G~g~~~~~~~~~l~~l 258 (589)
|||||| ||.|++..+.+.... . ..+. ..+. .+..+.+++++++|.+++||+|++|.|+ + ++.+++.+|
T Consensus 155 ~GPV~l-iP~dv~~~~~~~~~~~~~~~~~~~-~~~~----~~~~~~i~~~~~~l~~a~rpvil~G~g~-~-~a~~~l~~l 226 (590)
T 1v5e_A 155 GVAVLE-VPGDFAKVEIDNDQWYSSANSLRK-YAPI----APAAQDIDAAVELLNNSKRPVIYAGIGT-M-GHGPAVQEL 226 (590)
T ss_dssp SEEEEE-EETTGGGCEEEGGGCCCCGGGCCC-CCCC----CCCHHHHHHHHHHHHHCSSEEEEECGGG-T-TCHHHHHHH
T ss_pred CceEEE-EccchhhcccCccccccccccccc-CCCC----CCCHHHHHHHHHHHHhCCCeEEEEcCch-h-HHHHHHHHH
Confidence 599999 999997632111000 0 0110 1111 1234679999999999999999999999 7 889999999
Q ss_pred HHHhCCceEEccCCccCCCCCCCCceeeecCCCCCHHHHHHhhhcCEEEEeCCCcCCcccccccccCCCCceEEEcCCce
Q 007800 259 ADATGYPIAIMPSGKGLVPEHHPHFIGTYWGAVSSSFCGEIVESADAYVFVGPIFNDYSSVGYSLLIKKEKAIIVQPHRV 338 (589)
Q Consensus 259 ae~~~~Pv~tt~~~~g~~~~~~pl~~G~~~g~~~~~~~~~~l~~aD~vl~lG~~~~~~~~~~~~~~~~~~~~i~id~d~~ 338 (589)
+|++++||++|++++|.||++||+++|.+ |..++..+++++++||+||++|+++++....+- .+ ++.++||||.|+.
T Consensus 227 ae~~~~Pv~~t~~g~g~~~~~~p~~~G~~-g~~g~~~~~~~l~~aDlvl~iG~~~~~~~~~~~-~~-~~~~~i~id~d~~ 303 (590)
T 1v5e_A 227 ARKIKAPVITTGKNFETFEWDFEALTGST-YRVGWKPANETILEADTVLFAGSNFPFSEVEGT-FR-NVDNFIQIDIDPA 303 (590)
T ss_dssp HHHHTCCEEECTTCGGGSCTTCTTEEEES-SSSSCHHHHHHHHHCSEEEEESCCCTTTTTTTT-TT-TCSEEEEEESCGG
T ss_pred HHHHCCCEEEccccCcCCCCCChhhCccC-cccCCHHHHHHHHhCCEEEEECCCCcchhcccc-CC-CCCeEEEEeCCHH
Confidence 99999999999999999999999999994 888999999999999999999999987652110 12 5678999999999
Q ss_pred eecCCCccc----cccHHHHHHHHHHHhhcCc-hhh-hhhhhhcCCCCCCCCC---CCCCCcCHHHHHHHHHhhCCCCCE
Q 007800 339 TVGNGPSLG----WVFMADFLSALAKKLRKNT-TAL-ENYRRIYVPPGIPVKR---AQNEPLRVNVLFKHIQDMLSGDTA 409 (589)
Q Consensus 339 ~~~~~~~~~----~~~~~~~l~~L~~~l~~~~-~~~-~~~~~~~~~~~~~~~~---~~~~~i~~~~~~~~L~~~l~~~~i 409 (589)
+++ +.+.. ..|++.+|++|.+.+.... ..| ..+.+.+......... ....++++..+++.|++.++++++
T Consensus 304 ~~~-~~~~~~~~i~gd~~~~l~~L~~~l~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~i 382 (590)
T 1v5e_A 304 MLG-KRHHADVAILGDAALAIDEILNKVDAVEESAWWTANLKNIANWREYINMLETKEEGDLQFYQVYNAINNHADEDAI 382 (590)
T ss_dssp GTT-SSSCCSEEEESCHHHHHHHHHHHSCCCCCCHHHHHHHHHHHHHHHHHHHHHTCCSSBCCHHHHHHHHHHHSCTTCE
T ss_pred HHC-CCcCCCeEEEcCHHHHHHHHHHhhccCCcHHHHHHHHHHHHHhHhhhhhcccCCCCCcCHHHHHHHHHhhCCCCCE
Confidence 887 33322 2488999999998875422 112 1121110000000000 123468999999999999999999
Q ss_pred EEecCCcccccc-ccccccCCCeeEeccCccchhhHHHHHHHHhhhcCCCcEEEEEcchhhcccHHHHHHHHHhCCCeEE
Q 007800 410 VIAETGDSWFNC-QKLRLPENCGYEFQMQYGSIGWSVGATLGYAQAAKDKRVIACIGDGSFQVTAQEISTMIRCGQRSII 488 (589)
Q Consensus 410 iv~d~G~~~~~~-~~~~~~~~~~~~~~~~~g~mG~~l~~aiGaala~~~~~vv~i~GDGsf~~~~~el~ta~~~~l~v~i 488 (589)
++.|+|++.+|. .++..+++.+++.++++|+||+++|+|+|+++|.|+++||+++|||+|+|+++||+|++++++|+++
T Consensus 383 vv~d~G~~~~~~~~~~~~~~~~~~~~~~~~g~mG~~l~~AiGaala~~~~~vv~i~GDG~~~~~~~~L~ta~~~~l~~~i 462 (590)
T 1v5e_A 383 YSIDVGNSTQTSIRHLHMTPKNMWRTSPLFATMGIAIPGGLGAKNTYPDRQVWNIIGDGAFSMTYPDVVTNVRYNMPVIN 462 (590)
T ss_dssp EEECSSHHHHGGGGTCCCCTTSEEECCCSSCCTTCHHHHHHHHHHHCTTSCEEEEEEHHHHHHHGGGHHHHHHTTCCCEE
T ss_pred EEECCchHHHHHHHhcccCCCCeEEcCCCCCcccChHHHHHHHHHhCCCCeEEEEEechHHhchHHHHHHHHHhCCCCEE
Confidence 999999998774 5566677778999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeCCchhhhhhhcCCC-C----CCCCCCChHHHHHHccCCCCCccEEEeCCHHHHHHHHHHhhhcCC---CCeEEEEE
Q 007800 489 FLINNGGYTIEVEIHDGP-Y----NVIKNWDYTGLVNAIHNGEGKCWTAKVRSEDELTEAMKTATGEQK---DSLCFIEV 560 (589)
Q Consensus 489 vv~nN~~~~~~~~~~~~~-~----~~~~~~d~~~la~a~G~~~~~~~~~~v~~~~~l~~al~~a~~~~~---~gp~viev 560 (589)
||+||++|++.+..+... | +++.++||.++|++||+ ++++|+++++|+++|+++++ . +||+||||
T Consensus 463 vv~NN~~~~~~~~~q~~~~~~~~~~~~~~~d~~~~a~a~G~-----~~~~v~~~~el~~al~~a~~--~~~~~gp~liev 535 (590)
T 1v5e_A 463 VVFSNTEYAFIKNKYEDTNKNLFGVDFTDVDYAKIAEAQGA-----KGFTVSRIEDMDRVMAEAVA--ANKAGHTVVIDC 535 (590)
T ss_dssp EEEECSSCTTGGGTTSSSCCSCCCCCCCCCCHHHHHHHTTS-----EEEEECBHHHHHHHHHHHHH--HHHTTCCEEEEE
T ss_pred EEEECCchHHHHHHHHHhcCCCccccCCCCCHHHHHHHcCC-----EEEEECCHHHHHHHHHHHHH--hcCCCCCEEEEE
Confidence 999999999954322211 2 22567899999999999 99999999999999999986 5 89999999
Q ss_pred EcCCCC
Q 007800 561 FVHKDD 566 (589)
Q Consensus 561 ~~~~~~ 566 (589)
.|++.+
T Consensus 536 ~~~~~~ 541 (590)
T 1v5e_A 536 KITQDR 541 (590)
T ss_dssp ECCSCC
T ss_pred Eecccc
Confidence 999988
No 16
>2x7j_A 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene -1-carboxylate synthase; transferase, metal-binding; HET: TPP; 2.35A {Bacillus subtilis}
Probab=100.00 E-value=9.8e-87 Score=741.09 Aligned_cols=534 Identities=15% Similarity=0.123 Sum_probs=434.2
Q ss_pred cccHHHHHHHHHHHcCCCEEEecCCcchHHHHHhhhcCCCCeEEecCchhHHHHhhhhhhhccCc-eEEEEeCCcchHHH
Q 007800 26 VGTLGRHLARRLVEIGAKDVFSVPGDFNLTLLDHLIAEPELNLVGCCNELNAGYAADGYARSRGV-GACVVTFTVGGLSV 104 (589)
Q Consensus 26 ~~~~a~~i~~~L~~~GV~~vfg~pG~~~~~l~~al~~~~~i~~v~~~hE~~A~~~A~gyar~tg~-~v~~~t~GpG~~n~ 104 (589)
.++++++|++.|+++||++|||+||+.+.+|+++|.++++|++|.++||++|+|||+||||+||+ +||++|+|||++|+
T Consensus 30 ~~~~a~~lv~~L~~~GV~~vFg~PG~~~~~l~dal~~~~~i~~i~~~hE~~Aa~aA~GyAr~tgkpgv~~~TsGpG~~N~ 109 (604)
T 2x7j_A 30 ITHYIGSFIDEFALSGITDAVVCPGSRSTPLAVLCAAHPDISVHVQIDERSAGFFALGLAKAKQRPVLLICTSGTAAANF 109 (604)
T ss_dssp HHHHHHHHHHHHHHHTCCEEEECCCSTTHHHHHHHHHCTTCEEEECSSHHHHHHHHHHHHHHHTSCEEEEECSSHHHHTT
T ss_pred hHHHHHHHHHHHHHcCCCEEEECcCcccHHHHHHHHhCCCceEEEecChHHHHHHHHHHHHhhCCCEEEEECChhHHHHH
Confidence 46899999999999999999999999999999999876789999999999999999999999999 99999999999999
Q ss_pred HHHHHHhhhcCCcEEEEeCCCCccccCCccceeeecCCCChHHHHHhhhcceeEEEEeCChhh-------HHHHHHHHHH
Q 007800 105 LNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCFQAITCSQAVVNNLGD-------AHELIDTAIS 177 (589)
Q Consensus 105 ~~~l~~A~~~~~PllvI~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tk~~~~v~~~~~-------~~~~l~~A~~ 177 (589)
++||++|+.+++|||+|||+++....+++. +|..||..+++++|||+.++.++++ +++.+++||+
T Consensus 110 ~~gia~A~~~~vPlv~ItG~~~~~~~g~~~--------~Q~~d~~~~~~~~tk~~~~v~~~~~~~~~~~~~~~~i~~A~~ 181 (604)
T 2x7j_A 110 YPAVVEAHYSRVPIIVLTADRPHELREVGA--------PQAINQHFLFGNFVKFFTDSALPEESPQMLRYIRTLASRAAG 181 (604)
T ss_dssp HHHHHHHHHHTCCEEEEEEECCGGGSSSCC--------TTCCCCTTTTGGGSSCEEECCCCCCSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhcCCCEEEEeCCCCHHHhCCCC--------CCcCcHHHHhhhheeeeeecCCCcccchhHHHHHHHHHHHHH
Confidence 999999999999999999999998776642 2345788999999999999999998 9999999999
Q ss_pred HhHhc-CCcEEEEeCCCCCCCCCCCCCCCC----CCcc-CCCCCCChhhHHHHHHHHHHHHHhcCCCEEEeCcccchhhH
Q 007800 178 TALKE-SKPVYISISCNLPGIPHPTFARDP----VPFF-LAPKVSNQLGLEAAVEATADFLNKAVKPVLVGGPNIRVAKA 251 (589)
Q Consensus 178 ~a~~~-~gPV~i~iP~dv~~~~~~~~~~~~----~~~~-~~~~~~~~~~~~~~i~~~~~~L~~a~rpviv~G~g~~~~~~ 251 (589)
+|.++ ||||||+||.|++..+.......+ .... ..+. ...+....+++++++|.+++||+|++|.++ ++++
T Consensus 182 ~A~~~~~GPV~l~iP~d~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~i~~~~~~l~~A~rPvIl~G~g~-~~~a 258 (604)
T 2x7j_A 182 EAQKRPMGPVHVNVPLREPLMPDLSDEPFGRMRTGRHVSVKTG--TQSVDRESLSDVAEMLAEAEKGMIVCGELH-SDAD 258 (604)
T ss_dssp HHHSSSCCEEEEEEECCSCCCCCTTSCTTCCSSSSCSSEEECC--EEECCTGGGHHHHHHHHHCSSEEEEECCCC-CHHH
T ss_pred HhhCCCCCcEEEEcccCccCCCccccccccccccccccccccc--CccCChhhHHHHHHHHhhcCCeEEEECCCC-cHHH
Confidence 99985 799999999999653211100000 0000 0000 011223568899999999999999999998 5678
Q ss_pred HHHHHHHHHHhCCceEEccCCccCC-CCCCCCceeeecCCCCCHHHHHHhhhcCEEEEeCCCcCCcccccccccCCCCce
Q 007800 252 QKAFIELADATGYPIAIMPSGKGLV-PEHHPHFIGTYWGAVSSSFCGEIVESADAYVFVGPIFNDYSSVGYSLLIKKEKA 330 (589)
Q Consensus 252 ~~~l~~lae~~~~Pv~tt~~~~g~~-~~~~pl~~G~~~g~~~~~~~~~~l~~aD~vl~lG~~~~~~~~~~~~~~~~~~~~ 330 (589)
.+++.+|||++++||++|+++++.+ |++||+++|.+.+..++...+++++ +|+||.||+++.+..+..|....++.++
T Consensus 259 ~~~l~~lae~~~~PV~~t~~~~~~~~~~~~p~~~g~~~~~~~~~~~~~~~~-~Dlvl~iG~~~~~~~~~~~~~~~~~~~~ 337 (604)
T 2x7j_A 259 KENIIALSKALQYPILADPLSNLRNGVHDKSTVIDAYDSFLKDDELKRKLR-PDVVIRFGPMPVSKPVFLWLKDDPTIQQ 337 (604)
T ss_dssp HHHHHHHHHHHTCCEEECGGGTTTBSSSCCTTEECCHHHHTTSHHHHHHHC-CSEEEEESSCCSCHHHHHHHHHCTTSEE
T ss_pred HHHHHHHHHhcCceEEEcccccccccCCCCcceechHHHHhcCchhhhhcC-CCEEEEECCcCccHHHHHHHhhCCCCeE
Confidence 8999999999999999999987666 8889999998755677777888876 8999999999987765455432335689
Q ss_pred EEEcCCceeecCCCccc----cccHHHHHHHHHHHhh-c-C-chhhhhhhhhcC--CCCCCCCCCCCCCcCHHHHHHHHH
Q 007800 331 IIVQPHRVTVGNGPSLG----WVFMADFLSALAKKLR-K-N-TTALENYRRIYV--PPGIPVKRAQNEPLRVNVLFKHIQ 401 (589)
Q Consensus 331 i~id~d~~~~~~~~~~~----~~~~~~~l~~L~~~l~-~-~-~~~~~~~~~~~~--~~~~~~~~~~~~~i~~~~~~~~L~ 401 (589)
||||.|+.+++ +.+.. ..|++.+|++|.+.+. . . ..+...|.+... ..... ......++++..+++.|+
T Consensus 338 i~id~d~~~~~-~~~~~~~~i~~d~~~~l~~L~~~l~~~~~~~~w~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~L~ 415 (604)
T 2x7j_A 338 IVIDEDGGWRD-PTQASAHMIHCNASVFAEEIMAGLTAATRSSEWLEKWQFVNGRFREHLQ-TISSEDVSFEGNLYRILQ 415 (604)
T ss_dssp EEECTTCCCCC-TTSCCSEEECSCHHHHHHHHHHTSCSSCCCCHHHHHHHHHHHHHHHHHH-TSCCCCTTSHHHHHHHHH
T ss_pred EEECCCCCccC-CCccceEEEEcCHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHHHHHHH-hhcccCCCCHHHHHHHHH
Confidence 99999999886 33222 3489999999998774 2 1 122222221100 00000 011234799999999999
Q ss_pred hhCCCCCEEEecCCcccccccc-ccccC-CCeeEeccCccchhhHHHHHHHHhhhcCCCcEEEEEcchhhcccHHHHHHH
Q 007800 402 DMLSGDTAVIAETGDSWFNCQK-LRLPE-NCGYEFQMQYGSIGWSVGATLGYAQAAKDKRVIACIGDGSFQVTAQEISTM 479 (589)
Q Consensus 402 ~~l~~~~iiv~d~G~~~~~~~~-~~~~~-~~~~~~~~~~g~mG~~l~~aiGaala~~~~~vv~i~GDGsf~~~~~el~ta 479 (589)
+.+|++++++.|+|++.+|... +...+ +.+++.++++++||+++|+|+|+++| ++++||+++|||+|+|+++||+|+
T Consensus 416 ~~lp~d~iv~~d~g~~~~~~~~~~~~~~~~~~~~~~~G~~~ig~~l~~AiGaala-~~~~vv~i~GDGsf~~~~~eL~ta 494 (604)
T 2x7j_A 416 HLVPENSSLFVGNSMPIRDVDTFFEKQDRPFRIYSNRGANGIDGVVSSAMGVCEG-TKAPVTLVIGDLSFYHDLNGLLAA 494 (604)
T ss_dssp HHSCTTCEEEECTTHHHHHHHHHCCCBSCCCEEECCTTTCCSSSHHHHHHHHHHH-HTSCEEEEEEHHHHHHTGGGGHHH
T ss_pred HhCCCCCEEEEECCHHHHHHHHhcccCCCCceEEeCCCcCCcCcHHHHHHHHHhc-CCCcEEEEEccHHHHhHHHHHHHh
Confidence 9999999999999988766543 33332 56799999999999999999999999 689999999999999999999999
Q ss_pred HHhCCCeEEEEEeCCchhhhhhhc--------CCCCCCCCCCChHHHHHHccCCCCCccEEEeCCHHHHHHHHHHhhhcC
Q 007800 480 IRCGQRSIIFLINNGGYTIEVEIH--------DGPYNVIKNWDYTGLVNAIHNGEGKCWTAKVRSEDELTEAMKTATGEQ 551 (589)
Q Consensus 480 ~~~~l~v~ivv~nN~~~~~~~~~~--------~~~~~~~~~~d~~~la~a~G~~~~~~~~~~v~~~~~l~~al~~a~~~~ 551 (589)
+++++|+++||+||++|++.+.+. +..+....++||.++|++||+ ++++|++.++|+++|+++++
T Consensus 495 ~~~~lp~~ivv~NN~~~~i~~~~~~~q~~~~~~~~~~~~~~~d~~~~a~a~G~-----~~~~v~~~~el~~al~~a~~-- 567 (604)
T 2x7j_A 495 KKLGIPLTVILVNNDGGGIFSFLPQASEKTHFEDLFGTPTGLDFKHAAALYGG-----TYSCPASWDEFKTAYAPQAD-- 567 (604)
T ss_dssp HHHCCCEEEEEEECSSCGGGGGSGGGSCHHHHHHHTTCCCCCCTHHHHHHTTC-----EEECCSSHHHHHHHCCCCCS--
T ss_pred hhcCCCeEEEEEeCCCCcccccCCCCccchhhHhhccCCCCCCHHHHHHHcCC-----eEEecCCHHHHHHHHHHHHh--
Confidence 999999999999999999833211 111233467899999999999 99999999999999999986
Q ss_pred CCCeEEEEEEcCCCCChHHHHHHHHHhhhh
Q 007800 552 KDSLCFIEVFVHKDDTSKELLEWGSRVSAA 581 (589)
Q Consensus 552 ~~gp~viev~~~~~~~~~~~~~~~~~~~~~ 581 (589)
.+||+||||+|++++.++.++++.+.++..
T Consensus 568 ~~gp~liev~~~~~~~~~~~~~~~~~~~~~ 597 (604)
T 2x7j_A 568 KPGLHLIEIKTDRQSRVQLHRDMLNEAVRE 597 (604)
T ss_dssp SCCEEEEEEECCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCEEEEEECCccccHHHHHHHHHHHHHH
Confidence 789999999999999999999999887764
No 17
>2iht_A Carboxyethylarginine synthase; thiamin diphosphate complex, transferase; HET: MSE TPP; 2.00A {Streptomyces clavuligerus} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1upb_A* 1upc_A* 1upa_A* 2ihu_A* 2ihv_A*
Probab=100.00 E-value=8.7e-86 Score=729.57 Aligned_cols=517 Identities=20% Similarity=0.229 Sum_probs=428.7
Q ss_pred cccHHHHHHHHHHHcCCCEEEecCCcc-hHHHHHhhhcCCCCeEEecCchhHHHHhhhhhhhccCc-eEEEEeCCcchHH
Q 007800 26 VGTLGRHLARRLVEIGAKDVFSVPGDF-NLTLLDHLIAEPELNLVGCCNELNAGYAADGYARSRGV-GACVVTFTVGGLS 103 (589)
Q Consensus 26 ~~~~a~~i~~~L~~~GV~~vfg~pG~~-~~~l~~al~~~~~i~~v~~~hE~~A~~~A~gyar~tg~-~v~~~t~GpG~~n 103 (589)
.++++++|++.|+++||++|||+||++ +.+|+++|. + |++|.++||++|+|||+||||+||+ +||++|+|||++|
T Consensus 11 ~~~~a~~l~~~L~~~GV~~vfg~PG~~~~~~l~~al~--~-i~~i~~~~E~~Aa~~A~Gyar~tg~p~v~~~TsGpG~~N 87 (573)
T 2iht_A 11 KPTAAHALLSRLRDHGVGKVFGVVGREAASILFDEVE--G-IDFVLTRHEFTAGVAADVLARITGRPQACWATLGPGMTN 87 (573)
T ss_dssp CCCHHHHHHHHHHHTTCCEEEECCCGGGGTCCSCSST--T-CEEEECSSHHHHHHHHHHHHHHHCSCEEEEECTTHHHHH
T ss_pred CccHHHHHHHHHHHCCCCEEEEecCCcchhHHHHHHc--C-CeEEeeCCHHHHHHHHHHHHHHHCCCEEEEEccCchHHH
Confidence 379999999999999999999999999 999999997 4 9999999999999999999999999 9999999999999
Q ss_pred HHHHHHHhhhcCCcEEEEeCCCCccccCC-ccceeeecCCCChHHHHHhhhcceeEEEEeCChhhHHHHHHHHHHHhHhc
Q 007800 104 VLNAIAGAYSENLPVICIVGGPNSNDYGT-NRILHHTIGLPDFTQELRCFQAITCSQAVVNNLGDAHELIDTAISTALKE 182 (589)
Q Consensus 104 ~~~~l~~A~~~~~PllvI~g~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~tk~~~~v~~~~~~~~~l~~A~~~a~~~ 182 (589)
+++|+++|+.+++|||+|+|+++....++ + . +|..||..+|+++|||+.++.+++++++.+++|++.|.++
T Consensus 88 ~~~~v~~A~~~~~Pll~itg~~~~~~~~~~~-----~---~Q~~d~~~~~~~~~k~~~~v~~~~~~~~~i~~A~~~A~~~ 159 (573)
T 2iht_A 88 LSTGIATSVLDRSPVIALAAQSESHDIFPND-----T---HQCLDSVAIVAPMSKYAVELQRPHEITDLVDSAVNAAMTE 159 (573)
T ss_dssp HHHHHHHHHHHTCCEEEEEEESCGGGCCTTT-----S---TTCCCHHHHHGGGSSEEEECCSGGGHHHHHHHHHHHHTBS
T ss_pred HHHHHHHHHhhCCCEEEEcccCcccccCCcC-----c---cccCCHHHHHHhHhhEEEEcCCHHHHHHHHHHHHHHHhcC
Confidence 99999999999999999999999987665 3 1 2345789999999999999999999999999999999987
Q ss_pred -CCcEEEEeCCCCCCCCCC----CCCCCCCCccCCCCCCChhhHHHHHHHHHHHHHhcCCCEEEeCcccchhhHHHHHHH
Q 007800 183 -SKPVYISISCNLPGIPHP----TFARDPVPFFLAPKVSNQLGLEAAVEATADFLNKAVKPVLVGGPNIRVAKAQKAFIE 257 (589)
Q Consensus 183 -~gPV~i~iP~dv~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~L~~a~rpviv~G~g~~~~~~~~~l~~ 257 (589)
+|||||+||.|++..+.. .......+ ...+......+..+.+++++++|.+++||+|++|.++.++++.+++.+
T Consensus 160 ~~GPV~l~iP~dv~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~v~~~~~~l~~a~rpvIl~G~g~~~~~a~~~l~~ 238 (573)
T 2iht_A 160 PVGPSFISLPVDLLGSSEGIDTTVPNPPANT-PAKPVGVVADGWQKAADQAAALLAEAKHPVLVVGAAAIRSGAVPAIRA 238 (573)
T ss_dssp SCCCEEEEEEHHHHTCCTTCC---CCCCCCC-CSSCBEEECTTHHHHHHHHHHHHHHCSSEEEEECHHHHHTTCHHHHHH
T ss_pred CCceEEEEecchHhhhhhcccccCCcccccc-CCCCccccCCCCHHHHHHHHHHHHcCCCeEEEECCCccccCHHHHHHH
Confidence 699999999999763210 11000001 011110000135678999999999999999999999998889999999
Q ss_pred HHHHhCCceEEccCCccCCCCCCCCceeee----cCCCCCHHHHHHhhhcCEEEEeCCC-cCCcccccccccCCCCceEE
Q 007800 258 LADATGYPIAIMPSGKGLVPEHHPHFIGTY----WGAVSSSFCGEIVESADAYVFVGPI-FNDYSSVGYSLLIKKEKAII 332 (589)
Q Consensus 258 lae~~~~Pv~tt~~~~g~~~~~~pl~~G~~----~g~~~~~~~~~~l~~aD~vl~lG~~-~~~~~~~~~~~~~~~~~~i~ 332 (589)
|+|++|+||++|+++||.+|++||+++|.+ +|..++..++++++++|+||.||++ +.++.+..|. ..++.++||
T Consensus 239 lae~~~~Pv~~t~~~~g~~~~~hp~~~G~~~~~~~g~~~~~~~~~~l~~aDlvl~iG~~~~~~~~~~~~~-~~~~~~~i~ 317 (573)
T 2iht_A 239 LAERLNIPVITTYIAKGVLPVGHELNYGAVTGYMDGILNFPALQTMFAPVDLVLTVGYDYAEDLRPSMWQ-KGIEKKTVR 317 (573)
T ss_dssp HHHHHTCCEEECSTTTTSSCTTCTTEEEECCTTHHHHHTSCHHHHHHTTCCEEEEETCCGGGCCCHHHHC-CSSCCEEEE
T ss_pred HHHHHCCeEEEecccCccCCCCCcCccCccccccCCCCCCHHHHHHHhhCCEEEEECCCccccccccccC-CCCCCeEEE
Confidence 999999999999999999999999999985 3566777888999999999999999 8887776665 224668999
Q ss_pred EcCCceeecCCCccc----cccHHHHHHHHHHHhhcCc-hhhhh---hhhhcCCCCCCCCCCCCCCcCHHHHHHHHHhhC
Q 007800 333 VQPHRVTVGNGPSLG----WVFMADFLSALAKKLRKNT-TALEN---YRRIYVPPGIPVKRAQNEPLRVNVLFKHIQDML 404 (589)
Q Consensus 333 id~d~~~~~~~~~~~----~~~~~~~l~~L~~~l~~~~-~~~~~---~~~~~~~~~~~~~~~~~~~i~~~~~~~~L~~~l 404 (589)
||.|+.+++ +.+.. ..|++.+|++|.+.+.... ..|.. +++...... ......+.++++..+++.|++.+
T Consensus 318 id~d~~~~~-~~~~~~~~i~~d~~~~l~~L~~~l~~~~~~~w~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~l 395 (573)
T 2iht_A 318 ISPTVNPIP-RVYRPDVDVVTDVLAFVEHFETATASFGAKQRHDIEPLRARIAEFL-ADPETYEDGMRVHQVIDSMNTVM 395 (573)
T ss_dssp EESSCCSCT-TTCCCSEEEESCHHHHHHHHHHHTTTCCCCCCCCCHHHHHHHHHHH-TCCCCCSSSBCHHHHHHHHHHHH
T ss_pred EeCCHHHhC-CCcCCCeeEeCCHHHHHHHHHHhccccCchhHHHHHHHHHHhhhhh-hccccCcCCcCHHHHHHHHHHhc
Confidence 999999887 33322 2488999999988875421 11221 111100000 00112234699999999999999
Q ss_pred CC-----CCEEEecCCcccccc-ccccccCCCeeEeccCccchhhHHHHHHHHhhhcCCCcEEEEEcchhhcccHHHHHH
Q 007800 405 SG-----DTAVIAETGDSWFNC-QKLRLPENCGYEFQMQYGSIGWSVGATLGYAQAAKDKRVIACIGDGSFQVTAQEIST 478 (589)
Q Consensus 405 ~~-----~~iiv~d~G~~~~~~-~~~~~~~~~~~~~~~~~g~mG~~l~~aiGaala~~~~~vv~i~GDGsf~~~~~el~t 478 (589)
++ +++++.|+|++..|. .++..+++.+++.++++|+||+++|+|+|++++.|+++||+++|||+|+|+++||+|
T Consensus 396 ~~~~~~~~~iv~~d~G~~~~~~~~~~~~~~~~~~~~~~g~g~mG~~l~~AiGaa~a~~~~~vv~i~GDG~~~~~~~~L~~ 475 (573)
T 2iht_A 396 EEAAEPGEGTIVSDIGFFRHYGVLFARADQPFGFLTSAGCSSFGYGIPAAIGAQMARPDQPTFLIAGDGGFHSNSSDLET 475 (573)
T ss_dssp HHHSCTTCCEEEECSSHHHHHHHHHCCCCSTTSEECCSSSCCTTCHHHHHHHHHHHSTTSCEEEEEEHHHHHHTGGGHHH
T ss_pred ccccCCCCcEEEEcCcHhHHHHHHhcCcCCCCeEEcCCCCcccccHHHHHHHHHHhCCCCcEEEEEccHHHHhHHHHHHH
Confidence 98 999999999997664 345556666799999999999999999999999999999999999999999999999
Q ss_pred HHHhCCCeEEEEEeCCchhhhhhh----cCC-CC--CCCCCCChHHHHHHccCCCCCccEEEeCCHHHHHHHHHHhhhcC
Q 007800 479 MIRCGQRSIIFLINNGGYTIEVEI----HDG-PY--NVIKNWDYTGLVNAIHNGEGKCWTAKVRSEDELTEAMKTATGEQ 551 (589)
Q Consensus 479 a~~~~l~v~ivv~nN~~~~~~~~~----~~~-~~--~~~~~~d~~~la~a~G~~~~~~~~~~v~~~~~l~~al~~a~~~~ 551 (589)
++++++|+++||+||++|++.+.. ++. .. ..+.++||.++|++||+ ++++|++.++|+++|+++++
T Consensus 476 a~~~~l~~~ivv~NN~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~a~a~G~-----~~~~v~~~~~l~~al~~a~~-- 548 (573)
T 2iht_A 476 IARLNLPIVTVVVNNDTNGLIELYQNIGHHRSHDPAVKFGGVDFVALAEANGV-----DATRATNREELLAALRKGAE-- 548 (573)
T ss_dssp HHHHTCCCEEEEEECSBCHHHHHHHHHHHSSCCGGGTBCCCCCHHHHHHHTTC-----EEEECCSHHHHHHHHHHHHT--
T ss_pred HHHhCCCeEEEEEECCcchhhHHHHHHhcCCCcCccccCCCCCHHHHHHHcCC-----eEEEeCCHHHHHHHHHHHHh--
Confidence 999999999999999999994321 222 22 44567899999999999 99999999999999999986
Q ss_pred CCCeEEEEEEcCC
Q 007800 552 KDSLCFIEVFVHK 564 (589)
Q Consensus 552 ~~gp~viev~~~~ 564 (589)
.+||+||||.+++
T Consensus 549 ~~gp~liev~~~~ 561 (573)
T 2iht_A 549 LGRPFLIEVPVNY 561 (573)
T ss_dssp SSSCEEEEEEBCC
T ss_pred CCCCEEEEEECCC
Confidence 7899999999998
No 18
>2pan_A Glyoxylate carboligase; thiamin-diphosphate (THDP), thimain-dependent enzymes, FAD, lyase; HET: FAD TDP 1PE; 2.70A {Escherichia coli}
Probab=100.00 E-value=2.7e-85 Score=731.66 Aligned_cols=522 Identities=16% Similarity=0.205 Sum_probs=427.9
Q ss_pred ccHHHHHHHHHHHcCCCEEEecCCcchHHHHHhhhcCCCCeEEecCchhHHHHhhhhhhhcc-Cc-eEEEEeCCcchHHH
Q 007800 27 GTLGRHLARRLVEIGAKDVFSVPGDFNLTLLDHLIAEPELNLVGCCNELNAGYAADGYARSR-GV-GACVVTFTVGGLSV 104 (589)
Q Consensus 27 ~~~a~~i~~~L~~~GV~~vfg~pG~~~~~l~~al~~~~~i~~v~~~hE~~A~~~A~gyar~t-g~-~v~~~t~GpG~~n~ 104 (589)
++++|+|++.|+++||++|||+||+++.+|+++|.++++|++|.++||++|+|||+||||+| |+ +||++|+|||++|+
T Consensus 27 ~~~a~~l~~~L~~~GV~~vfg~PG~~~~~l~~al~~~~~i~~i~~~~E~~Aa~~A~GyAr~tgg~~~v~~~TsGpG~~N~ 106 (616)
T 2pan_A 27 MRAVDAAMYVLEKEGITTAFGVPGAAINPFYSAMRKHGGIRHILARHVEGASHMAEGYTRATAGNIGVCLGTSGPAGTDM 106 (616)
T ss_dssp EEHHHHHHHHHHHTTCCEEEECCCGGGHHHHHHHHHHCCCEEEECSSHHHHHHHHHHHHHHSTTCCEEEEECSTHHHHTS
T ss_pred CcHHHHHHHHHHHCCCCEEEECCCCccHHHHHHHHhcCCCcEEeeCCHHHHHHHHHHHHHhcCCCceEEEeCCCchHHHH
Confidence 79999999999999999999999999999999998766899999999999999999999998 78 99999999999999
Q ss_pred HHHHHHhhhcCCcEEEEeCCCCccccCCccceeeecCCCChHHHHHhhhcceeEEEEeCChhhHHHHHHHHHHHhHhc-C
Q 007800 105 LNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCFQAITCSQAVVNNLGDAHELIDTAISTALKE-S 183 (589)
Q Consensus 105 ~~~l~~A~~~~~PllvI~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tk~~~~v~~~~~~~~~l~~A~~~a~~~-~ 183 (589)
++||++|+.+++|||+|+|+++....+++. .|..||..+++++|||++++.+++++++.+++|++.|.++ |
T Consensus 107 ~~~l~~A~~~~vPlvvItg~~p~~~~~~~~--------~Q~~d~~~~~~~~tk~~~~v~~~~~i~~~l~~A~~~A~~~r~ 178 (616)
T 2pan_A 107 ITALYSASADSIPILCITGQAPRARLHKED--------FQAVDIEAIAKPVSKMAVTVREAALVPRVLQQAFHLMRSGRP 178 (616)
T ss_dssp HHHHHHHHHTTCCEEEEEEECCGGGTTTTC--------TTCCCHHHHHGGGSSEEEECCSGGGHHHHHHHHHHHHHSSSC
T ss_pred HHHHHHHHhcCCCEEEEecCCcccccCccc--------ccccCHHHHHHHHHHhhcccCCHHHHHHHHHHHHHHHhcCCC
Confidence 999999999999999999999998655541 2345789999999999999999999999999999999986 7
Q ss_pred CcEEEEeCCCCCCCCCCCCCCCCCCccCCCCCCChhhHHHHHHHHHHHHHhcCCCEEEeCcccchhhHHHHHHHHHHHhC
Q 007800 184 KPVYISISCNLPGIPHPTFARDPVPFFLAPKVSNQLGLEAAVEATADFLNKAVKPVLVGGPNIRVAKAQKAFIELADATG 263 (589)
Q Consensus 184 gPV~i~iP~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~L~~a~rpviv~G~g~~~~~~~~~l~~lae~~~ 263 (589)
|||||+||.|++..+.+......... ....+ ....+.+++++++|.+++||+|++|.|+.++++.+++.+|||+++
T Consensus 179 GPV~l~iP~d~~~~~~~~~~~~~~~~--~~~~~--~~~~~~i~~~~~~l~~a~rpvil~G~g~~~~~a~~~l~~lae~~~ 254 (616)
T 2pan_A 179 GPVLVDLPFDVQVAEIEFDPDMYEPL--PVYKP--AASRMQIEKAVEMLIQAERPVIVAGGGVINADAAALLQQFAELTS 254 (616)
T ss_dssp CCEEEEEEHHHHHSEEECCGGGCCCC--CCCCC--CCCHHHHHHHHHHHHTCSSEEEEECHHHHHTTCHHHHHHHHHHHT
T ss_pred ceEEEEcchhhhhccccccccccccc--ccCCC--CCCHHHHHHHHHHHHcCCCeEEEECCCcCcccHHHHHHHHHHHhC
Confidence 99999999999653111100000000 00011 112567899999999999999999999998889999999999999
Q ss_pred CceEEccCCccCCCCCCCCceeeecCCCCCH-HHHHHhhhcCEEEEeCCCcCCcccccccccCCCCceEEEcCCceeecC
Q 007800 264 YPIAIMPSGKGLVPEHHPHFIGTYWGAVSSS-FCGEIVESADAYVFVGPIFNDYSSVGYSLLIKKEKAIIVQPHRVTVGN 342 (589)
Q Consensus 264 ~Pv~tt~~~~g~~~~~~pl~~G~~~g~~~~~-~~~~~l~~aD~vl~lG~~~~~~~~~~~~~~~~~~~~i~id~d~~~~~~ 342 (589)
+||++|+++||.+|++||+++|.+ |..++. .+++++++||+||+||+++++..+..+..+.++.++||||.|+.+++
T Consensus 255 ~PV~~t~~~~g~~~~~hp~~~G~~-g~~~~~~~~~~~l~~aDlvl~iG~~~~~~~~~~~~~~~~~~~~i~id~d~~~~~- 332 (616)
T 2pan_A 255 VPVIPTLMGWGCIPDDHELMAGMV-GLQTAHRYGNATLLASDMVFGIGNRFANRHTGSVEKYTEGRKIVHIDIEPTQIG- 332 (616)
T ss_dssp CCEEECTTTTTSSCTTSTTBCCCC-SSSSCCHHHHHHHHHCSEEEEESCCCCHHHHSSHHHHHTTCEEEEEESCGGGTT-
T ss_pred CCEEEccccCccCCCCCccccCCc-cccCCHHHHHHHHHhCCEEEEECCCCcccccCcccccCCCCeEEEEeCCHHHhC-
Confidence 999999999999999999999997 666665 88999999999999999998766555555556778999999998887
Q ss_pred CCccc----cccHHHHHHHHHHHhhc------C--chhhhhhhhhcCCCCCCCCCCCCCCcCHHHHHHHHHhhCCCCCEE
Q 007800 343 GPSLG----WVFMADFLSALAKKLRK------N--TTALENYRRIYVPPGIPVKRAQNEPLRVNVLFKHIQDMLSGDTAV 410 (589)
Q Consensus 343 ~~~~~----~~~~~~~l~~L~~~l~~------~--~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~L~~~l~~~~ii 410 (589)
+.+.. ..|++.+|++|.+.+.. . ..++....+.+.............++++..+++.|++.+++++++
T Consensus 333 ~~~~~~~~i~~D~~~~l~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~iv 412 (616)
T 2pan_A 333 RVLCPDLGIVSDAKAALTLLVEVAQEMQKAGRLPCRKEWVADCQQRKRTLLRKTHFDNVPVKPQRVYEEMNKAFGRDVCY 412 (616)
T ss_dssp SSSCCSSCEECCHHHHHHHHHHHHHHHHHTTCSCCCHHHHHHHHHHHTTSEECCCCCCSSBCHHHHHHHHHHHSCTTEEE
T ss_pred CCCCCCeEEEcCHHHHHHHHHHHhhhcccccccccHHHHHHHHHHHHhhhhhccccCCCCcCHHHHHHHHHHhCCCCcEE
Confidence 33322 24889999999887642 1 112222211111110000111234699999999999999999999
Q ss_pred EecCCcccccc-ccccccCCCeeEeccCccchhhHHHHHHHHhhhcCCCcEEEEEcchhhcccHHHHHHHHHhCCCeEEE
Q 007800 411 IAETGDSWFNC-QKLRLPENCGYEFQMQYGSIGWSVGATLGYAQAAKDKRVIACIGDGSFQVTAQEISTMIRCGQRSIIF 489 (589)
Q Consensus 411 v~d~G~~~~~~-~~~~~~~~~~~~~~~~~g~mG~~l~~aiGaala~~~~~vv~i~GDGsf~~~~~el~ta~~~~l~v~iv 489 (589)
+.|+|++..|. .++..+++..|+.++++|+||+++|+|+|+++|.|+++||+++|||+|+|+++||+|++++++|+++|
T Consensus 413 v~d~G~~~~~~~~~~~~~~~~~~~~~g~~G~~G~~l~~AiGaala~~~~~vv~i~GDGs~~~~~~~L~ta~~~~l~~~iv 492 (616)
T 2pan_A 413 VTTIGLSQIAAAQMLHVFKDRHWINCGQAGPLGWTIPAALGVCAADPKRNVVAISGDFDFQFLIEELAVGAQFNIPYIHV 492 (616)
T ss_dssp EECSSHHHHHHHHHCCCCSTTSEEECTTTCCTTCHHHHHHHHHHHCTTCEEEEEEEHHHHHHTGGGHHHHHHTTCCCEEE
T ss_pred EEcCcHHHHHHHHhcccCCCCeEEcCCCcccccchHHHHHHHHHhCCCCcEEEEEcchhhhCCHHHHHHHHHhCCCeEEE
Confidence 99999987654 44555566679999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeCCchhhhhhh----cCC-----CCCC--C-----CCCChHHHHHHccCCCCCccEEEeCCHHHHHHHHHHhhh--cC
Q 007800 490 LINNGGYTIEVEI----HDG-----PYNV--I-----KNWDYTGLVNAIHNGEGKCWTAKVRSEDELTEAMKTATG--EQ 551 (589)
Q Consensus 490 v~nN~~~~~~~~~----~~~-----~~~~--~-----~~~d~~~la~a~G~~~~~~~~~~v~~~~~l~~al~~a~~--~~ 551 (589)
|+||++|++.+.. ++. .+.. + +.+||.++|++||+ ++++|+++++|+++|+++++ .+
T Consensus 493 v~NN~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~a~a~G~-----~~~~v~~~~el~~al~~a~~~~~~ 567 (616)
T 2pan_A 493 LVNNAYLGLIRQSQRAFDMDYCVQLAFENINSSEVNGYGVDHVKVAEGLGC-----KAIRVFKPEDIAPAFEQAKALMAQ 567 (616)
T ss_dssp EEECSBCHHHHHHGGGGTCCCSCBCCCCCTTCGGGTTCCCCHHHHHHHTTC-----EEEEECSGGGHHHHHHHHHHHHHH
T ss_pred EEECCcchHHHHHHHHhcCCccccccccccccccCCCCCCCHHHHHHHcCC-----eEEEECCHHHHHHHHHHHHhhccc
Confidence 9999999983221 122 2222 2 24899999999999 99999999999999999974 11
Q ss_pred CCCeEEEEEEcCCCCC
Q 007800 552 KDSLCFIEVFVHKDDT 567 (589)
Q Consensus 552 ~~gp~viev~~~~~~~ 567 (589)
.+||+||||.|++.+.
T Consensus 568 ~~gp~lIev~~~~~~~ 583 (616)
T 2pan_A 568 YRVPVVVEVILERVTN 583 (616)
T ss_dssp HCSCEEEEEEBCSCCC
T ss_pred CCCcEEEEEEeccccc
Confidence 5799999999998764
No 19
>3lq1_A 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene- 1-carboxylate synthase; menaquinone biosynthesis, sephchc synthase, structural genomics; 2.60A {Listeria monocytogenes}
Probab=100.00 E-value=2.6e-85 Score=726.01 Aligned_cols=526 Identities=15% Similarity=0.140 Sum_probs=399.0
Q ss_pred cccHHHHHHHHHHHcCCCEEEecCCcchHHHHHhhhcCCCCeEEecCchhHHHHhhhhhhhccCc-eEEEEeCCcchHHH
Q 007800 26 VGTLGRHLARRLVEIGAKDVFSVPGDFNLTLLDHLIAEPELNLVGCCNELNAGYAADGYARSRGV-GACVVTFTVGGLSV 104 (589)
Q Consensus 26 ~~~~a~~i~~~L~~~GV~~vfg~pG~~~~~l~~al~~~~~i~~v~~~hE~~A~~~A~gyar~tg~-~v~~~t~GpG~~n~ 104 (589)
+++++++|++.|+++||++|||+||+.+++|+++|.++++|++|.++||++|+|||+||||+||+ +||++|+|||++|+
T Consensus 10 ~~~~a~~lv~~L~~~GV~~vFg~PG~~~~~l~dal~~~~~i~~i~~~hE~~Aa~aAdGyAr~tG~pgv~~~TsGpG~~N~ 89 (578)
T 3lq1_A 10 LTDYLAAFIEELVQAGVKEAIISPGSRSTPLALMMAEHPILKIYVDVDERSAGFFALGLAKASKRPVVLLCTSGTAAANY 89 (578)
T ss_dssp HHHHHHHHHHHHHHTTCCEEEECCCTTTHHHHHHHHHCSSCEEEECSSHHHHHHHHHHHHHHHCCCEEEEECSSHHHHTT
T ss_pred HHHHHHHHHHHHHHcCCCEEEECCCCccHHHHHHHHhCCCceEEEecCcHHHHHHHHHHHHhhCCCEEEEECCchhhhhh
Confidence 47899999999999999999999999999999999877789999999999999999999999999 99999999999999
Q ss_pred HHHHHHhhhcCCcEEEEeCCCCccccCCccceeeecCCCChHHHHHhhhcceeEEEEeCChhhHHH-------HHHHHHH
Q 007800 105 LNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCFQAITCSQAVVNNLGDAHE-------LIDTAIS 177 (589)
Q Consensus 105 ~~~l~~A~~~~~PllvI~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tk~~~~v~~~~~~~~-------~l~~A~~ 177 (589)
++||++||.+++|||+|||+++....+++ .. |..||..+|+++|||++++.+++++++ .|++||+
T Consensus 90 ~~gia~A~~d~vPll~itG~~p~~~~g~~-----~~---Qe~d~~~~~~~~tk~~~~v~~~~~~~~~~~~i~~~l~~A~~ 161 (578)
T 3lq1_A 90 FPAVAEANLSQIPLIVLTADRPHELRNVG-----AP---QAMDQLHLYGSHVKDFTDMALPENSEEMLRYAKWHGSRAVD 161 (578)
T ss_dssp HHHHHHHHHTTCCEEEEEEECCGGGTTSS-----CT---TCCCCTTTTGGGSSEEEECCCCCCSHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHhcCCCeEEEeCCCCHHhhcCC-----CC---CCcCHhhHHhhheeeEeecCCCCCchHHHHHHHHHHHHHHH
Confidence 99999999999999999999999876654 22 334789999999999999999998764 8999999
Q ss_pred HhHhc-CCcEEEEeCCCCCCCCCCCCCCCCC----Cc--cCCCCCCChhhHHHHHHHHHHHHHhcCCCEEEeCcccchhh
Q 007800 178 TALKE-SKPVYISISCNLPGIPHPTFARDPV----PF--FLAPKVSNQLGLEAAVEATADFLNKAVKPVLVGGPNIRVAK 250 (589)
Q Consensus 178 ~a~~~-~gPV~i~iP~dv~~~~~~~~~~~~~----~~--~~~~~~~~~~~~~~~i~~~~~~L~~a~rpviv~G~g~~~~~ 250 (589)
.|.++ ||||||+||.|++.. +....... +. ..........++++.+++++++|.+ +||+|++|+|+.+ +
T Consensus 162 ~A~~gr~GPV~l~iP~d~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~L~~-~rPvIl~G~g~~~-~ 237 (578)
T 3lq1_A 162 IAMKTPRGPVHLNFPLREPLV--PILEPSPFTATGKKHHHVHIYYTHEVLDDSSIQKMVTECTG-KKGVFVVGPIDKK-E 237 (578)
T ss_dssp HHHSSSCCCEEEEEECCSCCC--CCCSSCCC------------CCEEEEECHHHHHHHHHHTTT-SCEEEEECSCCCT-T
T ss_pred HhhCCCCCcEEEECccCCCCC--CCcccchhcccCccccccccccCccCCChHHHHHHHHHhcc-CCeEEEECCCCCh-H
Confidence 99996 799999999998653 11110000 00 0000001112346689999999999 9999999999986 4
Q ss_pred HHHHHHHHHHHhCCceEEccC-CccCCCCCCCCceeeecCCCCCHHHHHHhhhcCEEEEeCCCcCCcccccccccCCCCc
Q 007800 251 AQKAFIELADATGYPIAIMPS-GKGLVPEHHPHFIGTYWGAVSSSFCGEIVESADAYVFVGPIFNDYSSVGYSLLIKKEK 329 (589)
Q Consensus 251 ~~~~l~~lae~~~~Pv~tt~~-~~g~~~~~~pl~~G~~~g~~~~~~~~~~l~~aD~vl~lG~~~~~~~~~~~~~~~~~~~ 329 (589)
+.+++.+|+|++++||++|++ +++.+|++||+++|.|.+.... .....+.+||+||.||+++.+..+..|....++.+
T Consensus 238 ~~~~l~~lae~~~~PV~~t~~~~~~~~~~~hp~~~g~~~~~~~~-~~~~~~~~aDlvl~~G~~~~~~~~~~~~~~~~~~~ 316 (578)
T 3lq1_A 238 LEQPMVDLAKKLGWPILADPLSGLRSYGALDEVVIDQYDAFLKE-AEIIDKLTPEVVIRFGSMPVSKPLKNWLEQLSDIR 316 (578)
T ss_dssp CHHHHHHHHHHHTCCEEECGGGSTTSBSSCCSSEECCHHHHTTS-HHHHHHTCCSEEEEESSCCSCHHHHHHHHHCCSSE
T ss_pred HHHHHHHHHHhcCcEEEEecCCCCCCCCCCCccccccHHHHhcC-ccccccCCCCEEEEeCCcccchhHHHHHhcCCCCE
Confidence 679999999999999999965 6999999999999987443333 44556889999999999876655444543345678
Q ss_pred eEEEcCCceeecCCCccc----cccHHHHHHHHHHHhhcCc--h-hhhhhhhhcCCCC--CCCCCCCCCCcCHHHHHHHH
Q 007800 330 AIIVQPHRVTVGNGPSLG----WVFMADFLSALAKKLRKNT--T-ALENYRRIYVPPG--IPVKRAQNEPLRVNVLFKHI 400 (589)
Q Consensus 330 ~i~id~d~~~~~~~~~~~----~~~~~~~l~~L~~~l~~~~--~-~~~~~~~~~~~~~--~~~~~~~~~~i~~~~~~~~L 400 (589)
+||||+|+..++ ..+.. ..|++.+|++|.+.+.... . |...|.+...... .........++++..+++.|
T Consensus 317 ~i~id~d~~~~~-~~~~~~~~i~~d~~~~l~~L~~~l~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 395 (578)
T 3lq1_A 317 FYVVDPGAAWKD-PIKAVTDMIHCDERFLLDIMQQNMPDDAKDAAWLNGWTSYNKVAREIVLAEMANTTILEEGKIVAEL 395 (578)
T ss_dssp EEEECTTCCCCC-TTCCCSEEECSCHHHHHHHHHHHSCSTTCCHHHHHHHHHHHHHHHHHHHHHSCC----CTTHHHHHH
T ss_pred EEEECCCCCcCC-CCcCceEEEEeCHHHHHHHHHhhccCCCCcHHHHHHHHHHHHHHhHHHHHhhhcCCCCCHHHHHHHH
Confidence 999999998876 33322 3489999999998776432 1 2222321100000 00001123468999999999
Q ss_pred HhhCCCCCEEEecCCccccccc-ccc-ccCCCeeEeccCccchhhHHHHHHHHhhhcCCCcEEEEEcchhhcccHHHHHH
Q 007800 401 QDMLSGDTAVIAETGDSWFNCQ-KLR-LPENCGYEFQMQYGSIGWSVGATLGYAQAAKDKRVIACIGDGSFQVTAQEIST 478 (589)
Q Consensus 401 ~~~l~~~~iiv~d~G~~~~~~~-~~~-~~~~~~~~~~~~~g~mG~~l~~aiGaala~~~~~vv~i~GDGsf~~~~~el~t 478 (589)
++.++++++++.|.|+..++.. ++. .+++.+++.+.+.+++|+++|+|+|+++ ++++||+++|||+|+|+++||+|
T Consensus 396 ~~~l~~~~iv~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~G~~g~l~~AiGaa~--~~~~vv~i~GDGsf~~~~~eL~t 473 (578)
T 3lq1_A 396 RRLLPDKAGLFIGNSMPIRDVDTYFSQIDKKIKMLANRGANGIDGVVSSALGASV--VFQPMFLLIGDLSFYHDMNGLLM 473 (578)
T ss_dssp HHHSCSEEEEEECSSHHHHHHHHHCCCCSSEEEEECCCSSCCSSSHHHHHHHHTT--TSSSEEEEEEHHHHHHTGGGGHH
T ss_pred HHhCCCCCeEEEeCccHHHHHHHhhcccCCCceEEeCCCccccccHHHHHHHHhc--CCCCEEEEEchHHHHhhHHHHHh
Confidence 9999999999999887765543 232 3444567778888888889999999985 58999999999999999999999
Q ss_pred HHHhCCCeEEEEEeCCchhhhhhh---c-CC----CCCCCCCCChHHHHHHccCCCCCccEEEeCCHHHHHHHHHHhhhc
Q 007800 479 MIRCGQRSIIFLINNGGYTIEVEI---H-DG----PYNVIKNWDYTGLVNAIHNGEGKCWTAKVRSEDELTEAMKTATGE 550 (589)
Q Consensus 479 a~~~~l~v~ivv~nN~~~~~~~~~---~-~~----~~~~~~~~d~~~la~a~G~~~~~~~~~~v~~~~~l~~al~~a~~~ 550 (589)
++++++|+++||+||++|++.+.+ . .. .+....++||.++|++||+ ++++|++.++|+++|+++++
T Consensus 474 a~~~~l~~~ivv~NN~~~g~~~~~~~~~~~~~~~~~~~~~~~~d~~~~a~a~G~-----~~~~v~~~~el~~al~~a~~- 547 (578)
T 3lq1_A 474 AKKYKMNLTIVIVNNDGGGIFSFLPQANEPKYFESLFGTSTELDFRFAAAFYDA-----DYHEAKSVDELEEAIDKASY- 547 (578)
T ss_dssp HHHTTCCEEEEEECCC-------------------------CCCTHHHHHHTTC-----EEEECCSHHHHHHHHHHHTT-
T ss_pred hccCCCCeEEEEEECCcCccccccccccccchhhhhccCCCCCCHHHHHHHcCC-----ceEecCCHHHHHHHHHHHHh-
Confidence 999999999999999999994321 1 11 1223357899999999999 99999999999999999986
Q ss_pred CCCCeEEEEEEcCCCCChHHHHHH
Q 007800 551 QKDSLCFIEVFVHKDDTSKELLEW 574 (589)
Q Consensus 551 ~~~gp~viev~~~~~~~~~~~~~~ 574 (589)
.+||+||||.+++++....++.+
T Consensus 548 -~~gp~liev~~~~~~~~~~~~~~ 570 (578)
T 3lq1_A 548 -HKGLDIIEVKTNRHENKANHQAL 570 (578)
T ss_dssp -SSSEEEEEEC-------------
T ss_pred -CCCCEEEEEECCccccHHHHHhh
Confidence 88999999999998877665443
No 20
>2q28_A Oxalyl-COA decarboxylase; lyase, oxalate degradation, thiami diphosphate, lyase; HET: TPP ADP MES; 1.74A {Escherichia coli} PDB: 2q27_A* 2q29_A*
Probab=100.00 E-value=1.2e-84 Score=719.91 Aligned_cols=518 Identities=19% Similarity=0.225 Sum_probs=415.0
Q ss_pred cccHHHHHHHHHHHcCCCEEEecCCcchHHHHHhhhcCCCCeEEecCchhHHHHhhhhhhhccCc-eEEEEeCCcchHHH
Q 007800 26 VGTLGRHLARRLVEIGAKDVFSVPGDFNLTLLDHLIAEPELNLVGCCNELNAGYAADGYARSRGV-GACVVTFTVGGLSV 104 (589)
Q Consensus 26 ~~~~a~~i~~~L~~~GV~~vfg~pG~~~~~l~~al~~~~~i~~v~~~hE~~A~~~A~gyar~tg~-~v~~~t~GpG~~n~ 104 (589)
.++++++|++.|+++||++|||+||++++++++++.+ ++|++|.++||++|+|||+||||+||+ +||++|+|||++|+
T Consensus 7 ~~~~a~~l~~~L~~~GV~~vfg~PG~~~~~l~~al~~-~~i~~i~~~hE~~Aa~~A~Gyar~tg~pgv~~~TsGpG~~N~ 85 (564)
T 2q28_A 7 MTDGMHIIVEALKQNNIDTIYGVVGIPVTDMARHAQA-EGIRYIGFRHEQSAGYAAAASGFLTQKPGICLTVSAPGFLNG 85 (564)
T ss_dssp EEEHHHHHHHHHHHTTCCEEEECCCTTTHHHHHHHHH-TTCEEEECSSHHHHHHHHHHHHHHHSSCEEEEECSHHHHHHH
T ss_pred cCcHHHHHHHHHHHcCCCEEEECCCcchHHHHHHHHh-CCCcEEeeCCHHHHHHHHHHHHHHhCCCEEEEEccCchHHHH
Confidence 4799999999999999999999999999999999976 579999999999999999999999999 99999999999999
Q ss_pred HHHHHHhhhcCCcEEEEeCCCCccccCCccceeeecCCCChHHHHHhhhcceeEEEEeCChhhHHHHHHHHHHHhHhc-C
Q 007800 105 LNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCFQAITCSQAVVNNLGDAHELIDTAISTALKE-S 183 (589)
Q Consensus 105 ~~~l~~A~~~~~PllvI~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tk~~~~v~~~~~~~~~l~~A~~~a~~~-~ 183 (589)
++||++|+.+++|||+|+|+++....+.+ .+..|..||..+++++|||+.++.+++++++.+++|++.|.++ |
T Consensus 86 ~~gi~~A~~~~vPll~itg~~~~~~~~~~------~~~~Q~~dq~~~~~~~tk~~~~v~~~~~~~~~i~~A~~~A~~~~~ 159 (564)
T 2q28_A 86 LTALANATVNGFPMIMISGSSDRAIVDLQ------QGDYEELDQMNAAKPYAKAAFRVNQPQDLGIALARAIRVSVSGRP 159 (564)
T ss_dssp HHHHHHHHHHTCCEEEEEEECCHHHHHTT------SCCTTCCCHHHHHGGGSSEEEECCSGGGHHHHHHHHHHHHHSSSC
T ss_pred HHHHHHHHhcCCCEEEEeCCCCccccCCC------CCccccccHHHHHHHhhheeeecCCHHHHHHHHHHHHHHHhcCCC
Confidence 99999999999999999999998755421 0112345789999999999999999999999999999999985 7
Q ss_pred CcEEEEeCCCCCCCCCCCC--CCCCCCccCCCCCCChhhHHHHHHHHHHHHHhcCCCEEEeCcccchhhHHHHHHHHHHH
Q 007800 184 KPVYISISCNLPGIPHPTF--ARDPVPFFLAPKVSNQLGLEAAVEATADFLNKAVKPVLVGGPNIRVAKAQKAFIELADA 261 (589)
Q Consensus 184 gPV~i~iP~dv~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~i~~~~~~L~~a~rpviv~G~g~~~~~~~~~l~~lae~ 261 (589)
|||||+||.|++..+.+.. .....+. ..+. ....+..+.+++++++|.+++||+|++|.++.++++.+++.+|||+
T Consensus 160 GPV~l~iP~dv~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~i~~~~~~l~~a~rpvIl~G~g~~~~~a~~~l~~lae~ 237 (564)
T 2q28_A 160 GGVYLDLPANVLAATMEKDEALTTIVKV-ENPS-PALLPCPKSVTSAISLLAKAERPLIILGKGAAYSQADEQLREFIES 237 (564)
T ss_dssp CEEEEEEEHHHHHCEEEHHHHHHTCCCC-SCSS-CCEEECHHHHHHHHHHHHHCSSEEEEECHHHHHHTCHHHHHHHHHH
T ss_pred ceEEEEcCHHHhhccccccccccccccc-cCCC-CCCCCCHHHHHHHHHHHHcCCCcEEEECcccccccHHHHHHHHHHH
Confidence 9999999999864211100 0000000 1000 1112345679999999999999999999999988899999999999
Q ss_pred hCCceEEccCCccCCCCCCCCceeeecCCCCCHHHHHHhhhcCEEEEeCCCcCCcccccccccCCCCceEEEcCCceeec
Q 007800 262 TGYPIAIMPSGKGLVPEHHPHFIGTYWGAVSSSFCGEIVESADAYVFVGPIFNDYSSVGYSLLIKKEKAIIVQPHRVTVG 341 (589)
Q Consensus 262 ~~~Pv~tt~~~~g~~~~~~pl~~G~~~g~~~~~~~~~~l~~aD~vl~lG~~~~~~~~~~~~~~~~~~~~i~id~d~~~~~ 341 (589)
+++||++|++|||.+|++||+++|.. .++++++||+||.||+++++..+.++..+.++.++||||.|+.+++
T Consensus 238 ~~~Pv~~t~~~~g~~~~~hp~~~G~~--------~~~~l~~aDlvl~iG~~~~~~~~~~~~~~~~~~~~i~id~d~~~~~ 309 (564)
T 2q28_A 238 AQIPFLPMSMAKGILEDTHPLSAAAA--------RSFALANADVVMLVGARLNWLLAHGKKGWAADTQFIQLDIEPQEID 309 (564)
T ss_dssp HTCCEEECGGGTTSSCTTCTTBCGGG--------HHHHHHHCSEEEEESCCCSGGGGGGTTTSCTTCEEEEEESCGGGTT
T ss_pred hCCCEEeccCccccCCCCChhhcChH--------HHhHhhcCCEEEEECCcccccccccccccCCCCeEEEEeCCHHHhc
Confidence 99999999999999999999998862 5678899999999999997655433333446678999999999886
Q ss_pred CCCccc----cccHHHHHHHHHHHhhcCc----h-hhhhhhhhcC---CCCCCCCCCCCCCcCHHHHHHHHHhhC--CCC
Q 007800 342 NGPSLG----WVFMADFLSALAKKLRKNT----T-ALENYRRIYV---PPGIPVKRAQNEPLRVNVLFKHIQDML--SGD 407 (589)
Q Consensus 342 ~~~~~~----~~~~~~~l~~L~~~l~~~~----~-~~~~~~~~~~---~~~~~~~~~~~~~i~~~~~~~~L~~~l--~~~ 407 (589)
+.+.. ..|++.+|++|.+.++... . |+..+.+... ............++++..+++.|++.+ +++
T Consensus 310 -~~~~~~~~i~~d~~~~l~~L~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~d 388 (564)
T 2q28_A 310 -SNRPIAVPVVGDIASSMQGMLAELKQNTFTTPLVWRDILNIHKQQNAQKMHEKLSTDTQPLNYFNALSAVRDVLRENQD 388 (564)
T ss_dssp -SSSCCSEEEESCHHHHHHHHHHHHHHSCCCCCHHHHHHHHHHHHHHHHHHHHHHTCCCSSBCHHHHHHHHHHHHTTCTT
T ss_pred -CCCCCCeEEEcCHHHHHHHHHHHhhhcCcCCcHHHHHHHHHHHHhhhhhhhhhhccCCCCcCHHHHHHHHHHHhcCCCC
Confidence 33322 2489999999988876421 1 2211111100 000000011234799999999999999 889
Q ss_pred CEEEecCCccccccc-cccccCCCeeEeccCccchhhHHHHHHHHhhhcCCCcEEEEEcchhhcccHHHHHHHHHhCCCe
Q 007800 408 TAVIAETGDSWFNCQ-KLRLPENCGYEFQMQYGSIGWSVGATLGYAQAAKDKRVIACIGDGSFQVTAQEISTMIRCGQRS 486 (589)
Q Consensus 408 ~iiv~d~G~~~~~~~-~~~~~~~~~~~~~~~~g~mG~~l~~aiGaala~~~~~vv~i~GDGsf~~~~~el~ta~~~~l~v 486 (589)
.+++.|.|++..+.. ++....+.+++.++++|+||+++|+|+|++++ |+++||+++|||+|+|+++||+|++++++|+
T Consensus 389 ~ivv~dg~~~~~~~~~~~~~~~p~~~~~~g~~g~~G~~l~~AiGaa~a-~~~~vv~i~GDGsf~~~~~el~ta~~~~l~~ 467 (564)
T 2q28_A 389 IYLVNEGANTLDNARNIIDMYKPRRRLDCGTWGVMGIGMGYAIGASVT-SGSPVVAIEGDSAFGFSGMEIETICRYNLPV 467 (564)
T ss_dssp CEEEEESSHHHHHHHHHSCCCSSSCEEESTTTTCTTCHHHHHHHHHHH-HCSCEEEEEEHHHHHTTGGGHHHHHHTTCCE
T ss_pred EEEEECCchHHHHHHHHhcccCCCeEecCCCCCcccchHHHHHHHhhc-CCCcEEEEEcchHhhccHHHHHHHHHhCCCe
Confidence 999999776644432 23333344588889999999999999999999 8999999999999999999999999999999
Q ss_pred EEEEEeCCch-hhhh-hh-cCCCC--C-CCCCCChHHHHHHccCCCCCccEEEeCCHHHHHHHHHHhhhcCCCCeEEEEE
Q 007800 487 IIFLINNGGY-TIEV-EI-HDGPY--N-VIKNWDYTGLVNAIHNGEGKCWTAKVRSEDELTEAMKTATGEQKDSLCFIEV 560 (589)
Q Consensus 487 ~ivv~nN~~~-~~~~-~~-~~~~~--~-~~~~~d~~~la~a~G~~~~~~~~~~v~~~~~l~~al~~a~~~~~~gp~viev 560 (589)
++||+||++| ++.. +. +++.+ . ..+.+||.++|++||+ ++++|+++++|+++|+++++ .+||+||||
T Consensus 468 ~ivv~NN~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~a~a~G~-----~~~~v~~~~el~~al~~a~~--~~~p~liev 540 (564)
T 2q28_A 468 TIVIFNNGGIYRGDGVDLSGAGAPSPTDLLHHARYDKLMDAFRG-----VGYNVTTTDELRHALTTGIQ--SRKPTIINV 540 (564)
T ss_dssp EEEEEECSBSSCSCCCCTTSSCCCCTTBCCTTCCGGGGGGGGTC-----EEEEECSHHHHHHHHHHHHH--HTSCEEEEE
T ss_pred EEEEEeCchhHHHHHHHHhccCCccccccCCCCCHHHHHHHcCC-----eEEEeCCHHHHHHHHHHHHh--CCCCEEEEE
Confidence 9999999995 5521 11 12211 1 2246899999999999 99999999999999999986 789999999
Q ss_pred EcCCCCChH
Q 007800 561 FVHKDDTSK 569 (589)
Q Consensus 561 ~~~~~~~~~ 569 (589)
.+++.+.++
T Consensus 541 ~~~~~~~~~ 549 (564)
T 2q28_A 541 VIDPAAGTE 549 (564)
T ss_dssp EBCTTSSCC
T ss_pred EeccccCCC
Confidence 999887664
No 21
>2c31_A Oxalyl-COA decarboxylase; oxalate, thiamin diphosphate, flavoprotein, lyase, thiamine pyrophosphate; HET: TZD ADP; 1.73A {Oxalobacter formigenes} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 2ji6_A* 2ji7_A* 2ji8_A* 2ji9_A* 2jib_A*
Probab=100.00 E-value=1.8e-84 Score=718.66 Aligned_cols=525 Identities=18% Similarity=0.202 Sum_probs=416.7
Q ss_pred cccHHHHHHHHHHHcCCCEEEecCCcchHHHHHhhhcCCCCeEEecCchhHHHHhhhhhhhccCc-eEEEEeCCcchHHH
Q 007800 26 VGTLGRHLARRLVEIGAKDVFSVPGDFNLTLLDHLIAEPELNLVGCCNELNAGYAADGYARSRGV-GACVVTFTVGGLSV 104 (589)
Q Consensus 26 ~~~~a~~i~~~L~~~GV~~vfg~pG~~~~~l~~al~~~~~i~~v~~~hE~~A~~~A~gyar~tg~-~v~~~t~GpG~~n~ 104 (589)
.++++++|++.|+++||++|||+||+++++|+++|.+ .+|++|.++||++|+|||+||||+||+ +||++|+|||++|+
T Consensus 9 ~~~~a~~l~~~L~~~GV~~vfg~PG~~~~~l~~al~~-~~i~~i~~~~E~~Aa~~A~GyAr~tg~pgv~~~TsGpG~~N~ 87 (568)
T 2c31_A 9 LTDGFHVLIDALKMNDIDTMYGVVGIPITNLARMWQD-DGQRFYSFRHEQHAGYAASIAGYIEGKPGVCLTVSAPGFLNG 87 (568)
T ss_dssp EEEHHHHHHHHHHHTTCCEEEECCCTTTHHHHHHHHH-TTCEEEECSSHHHHHHHHHHHHHHHSSCEEEEECSHHHHHHH
T ss_pred cccHHHHHHHHHHHcCCCEEEEeCCCccHHHHHHHHh-CCCcEEEeCcHHHHHHHHHHHHHHhCCCEEEEEcCCccHHHH
Confidence 4899999999999999999999999999999999976 479999999999999999999999999 99999999999999
Q ss_pred HHHHHHhhhcCCcEEEEeCCCCccccCCccceeeecCCCChHHHHHhhhcceeEEEEeCChhhHHHHHHHHHHHhHhc-C
Q 007800 105 LNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCFQAITCSQAVVNNLGDAHELIDTAISTALKE-S 183 (589)
Q Consensus 105 ~~~l~~A~~~~~PllvI~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tk~~~~v~~~~~~~~~l~~A~~~a~~~-~ 183 (589)
++||++|+.+++|||+|+|+++....+.+ .+..|..||..+++++|||+.++.+++++++.+++|++.|.++ +
T Consensus 88 ~~~i~~A~~~~vPll~itg~~~~~~~~~~------~~~~Q~~dq~~~~~~~tk~~~~v~~~~~~~~~i~~A~~~A~~~~~ 161 (568)
T 2c31_A 88 VTSLAHATTNCFPMILLSGSSEREIVDLQ------QGDYEEMDQMNVARPHCKASFRINSIKDIPIGIARAVRTAVSGRP 161 (568)
T ss_dssp HHHHHHHHHHTCCEEEEEEECCHHHHHTT------CCCTTCCCHHHHSGGGSSEEEECCSGGGHHHHHHHHHHHHHSSSC
T ss_pred HHHHHHHHhcCCCEEEEccCCCccccCCC------CCcccccCHHHHHHhhhheeeecCCHHHHHHHHHHHHHHhcCCCC
Confidence 99999999999999999999998765420 0112345789999999999999999999999999999999985 7
Q ss_pred CcEEEEeCCCCCCCCCCCCC--CCCCCccCCCCCCChhhHHHHHHHHHHHHHhcCCCEEEeCcccchhhHHHHHHHHHHH
Q 007800 184 KPVYISISCNLPGIPHPTFA--RDPVPFFLAPKVSNQLGLEAAVEATADFLNKAVKPVLVGGPNIRVAKAQKAFIELADA 261 (589)
Q Consensus 184 gPV~i~iP~dv~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~i~~~~~~L~~a~rpviv~G~g~~~~~~~~~l~~lae~ 261 (589)
|||||+||.|++..+.+... ...... ..+. ....+.++.+++++++|.+++||+|++|.|+.++++.+++.+|||+
T Consensus 162 GPV~l~iP~dv~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~i~~~~~~l~~a~rpvIl~G~g~~~~~a~~~l~~lae~ 239 (568)
T 2c31_A 162 GGVYVDLPAKLFGQTISVEEANKLLFKP-IDPA-PAQIPAEDAIARAADLIKNAKRPVIMLGKGAAYAQCDDEIRALVEE 239 (568)
T ss_dssp CEEEEEEETHHHHCEEEHHHHHHHCCCC-SCSS-CCCCCCHHHHHHHHHHHHTCSSEEEEECHHHHHHTCHHHHHHHHHH
T ss_pred ceEEEeCCHHHhhccccccccccccccc-cCCC-CCCCCCHHHHHHHHHHHHhCCCCEEEECcccccccHHHHHHHHHHH
Confidence 99999999998642111000 000000 0000 0012235679999999999999999999999988899999999999
Q ss_pred hCCceEEccCCccCCCCCCCCceeeecCCCCCHHHHHHhhhcCEEEEeCCCcCCcccccc-cccC-CCCceEEEcCCcee
Q 007800 262 TGYPIAIMPSGKGLVPEHHPHFIGTYWGAVSSSFCGEIVESADAYVFVGPIFNDYSSVGY-SLLI-KKEKAIIVQPHRVT 339 (589)
Q Consensus 262 ~~~Pv~tt~~~~g~~~~~~pl~~G~~~g~~~~~~~~~~l~~aD~vl~lG~~~~~~~~~~~-~~~~-~~~~~i~id~d~~~ 339 (589)
+++||++|++|||.+|++||+++|.. .++++++||+||.||+++++..+.++ ..+. ++.++||||.|+.+
T Consensus 240 ~~~Pv~~t~~~~g~~~~~~p~~~G~~--------~~~~l~~aDlvl~iG~~~~~~~~~~~~~~~~~~~~~ii~id~d~~~ 311 (568)
T 2c31_A 240 TGIPFLPMGMAKGLLPDNHPQSAAAT--------RAFALAQCDVCVLIGARLNWLMQHGKGKTWGDELKKYVQIDIQANE 311 (568)
T ss_dssp HTCCEEECGGGTTSSCTTCTTBCGGG--------HHHHHHHCSEEEEESCCCSGGGGGGCSGGGTTSCCEEEEEESCGGG
T ss_pred hCCCEEecccccccCCCCChhhcchH--------HHhhhccCCEEEEECCCCccccccCcccccCCCCCeEEEEeCCHHH
Confidence 99999999999999999999999863 56788999999999999987665433 2343 56789999999988
Q ss_pred ecCCCccc----cccHHHHHHHHHHHhhcCc---h-hhhhhhhhcC---CCCCC--CCCCCCCCcCHHHHHHHHHhhC--
Q 007800 340 VGNGPSLG----WVFMADFLSALAKKLRKNT---T-ALENYRRIYV---PPGIP--VKRAQNEPLRVNVLFKHIQDML-- 404 (589)
Q Consensus 340 ~~~~~~~~----~~~~~~~l~~L~~~l~~~~---~-~~~~~~~~~~---~~~~~--~~~~~~~~i~~~~~~~~L~~~l-- 404 (589)
++ +.+.. ..|++.+|++|.+.++... . |+..+.+... ..... ....+..++++..+++.|++.+
T Consensus 312 ~~-~~~~~~~~i~~d~~~~l~~L~~~l~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 390 (568)
T 2c31_A 312 MD-SNQPIAAPVVGDIKSAVSLLRKALKGAPKADAEWTGALKAKVDGNKAKLAGKMTAETPSGMMNYSNSLGVVRDFMLA 390 (568)
T ss_dssp TT-SSSCCSEEEESCHHHHHHHHHHHHTTCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCTTCBCHHHHHHHHHHHHHH
T ss_pred hc-CCcCCCceeeCCHHHHHHHHHHhhhhcCCCcHHHHHHHHHHHHhhhhhhhhhhcccccCCCcCHHHHHHHHHHHhcC
Confidence 86 33222 3489999999998876432 1 2211111100 00000 0000134799999999999999
Q ss_pred CCCCEEEecCCccccccc-cccccCCCeeEeccCccchhhHHHHHHHHhhhcCCCcEEEEEcchhhcccHHHHHHHHHhC
Q 007800 405 SGDTAVIAETGDSWFNCQ-KLRLPENCGYEFQMQYGSIGWSVGATLGYAQAAKDKRVIACIGDGSFQVTAQEISTMIRCG 483 (589)
Q Consensus 405 ~~~~iiv~d~G~~~~~~~-~~~~~~~~~~~~~~~~g~mG~~l~~aiGaala~~~~~vv~i~GDGsf~~~~~el~ta~~~~ 483 (589)
+++.+++.|.|++..+.. ++....+.+++.++++|+||+++|+|+|++++ |+++||+++|||+|+|+++||+|+++++
T Consensus 391 ~~~~iv~~dg~~~~~~~~~~~~~~~p~~~~~~g~~g~~G~~l~~AiGaala-~~~~vv~i~GDGsf~~~~~el~ta~~~~ 469 (568)
T 2c31_A 391 NPDISLVNEGANALDNTRMIVDMLKPRKRLDSGTWGVMGIGMGYCVAAAAV-TGKPVIAVEGDSAFGFSGMELETICRYN 469 (568)
T ss_dssp CCSSEEEEESSHHHHHHHHHCCCCSTTCEEESTTTTCSSCHHHHHHHHHHH-HCSCEEEEEEHHHHHTTGGGHHHHHHTT
T ss_pred CCCeEEEECChhHHHHHHHHhcccCCCeEEcCCCCccccccHHHHHHHHhC-CCCcEEEEEcchHhhccHHHHHHHHHhC
Confidence 989999999776654432 23334444588899999999999999999999 8999999999999999999999999999
Q ss_pred CCeEEEEEeCCch-hhhhhh-cCCC--CCCCCCCChHHHHHHccCCCCCccEEEeCCHHHHHHHHHHhhhcCCCCeEEEE
Q 007800 484 QRSIIFLINNGGY-TIEVEI-HDGP--YNVIKNWDYTGLVNAIHNGEGKCWTAKVRSEDELTEAMKTATGEQKDSLCFIE 559 (589)
Q Consensus 484 l~v~ivv~nN~~~-~~~~~~-~~~~--~~~~~~~d~~~la~a~G~~~~~~~~~~v~~~~~l~~al~~a~~~~~~gp~vie 559 (589)
+|+++||+||++| .+.... +++. ...++++||.++|++||+ ++++|++.++|+++|+++++ .+||+|||
T Consensus 470 l~~~ivv~NN~~~~~~~~~~~~~~~~~~~~~~~~d~~~~a~a~G~-----~~~~v~~~~el~~al~~a~~--~~~p~lie 542 (568)
T 2c31_A 470 LPVTVIIMNNGGIYKGNEADPQPGVISCTRLTRGRYDMMMEAFGG-----KGYVANTPAELKAALEEAVA--SGKPCLIN 542 (568)
T ss_dssp CCEEEEEEESSBSSCSCCCCSBTTBCCTTBCCCCCHHHHHHTTTC-----EEEEESSHHHHHHHHHHHHH--HTSCEEEE
T ss_pred CCeEEEEEeCchhHHHHHHHhhcCCcccCcCCCCCHHHHHHHcCC-----eEEEeCCHHHHHHHHHHHHh--CCCCEEEE
Confidence 9999999999995 442111 1111 112567899999999999 99999999999999999986 78999999
Q ss_pred EEcCCCCChHHHHHHHH
Q 007800 560 VFVHKDDTSKELLEWGS 576 (589)
Q Consensus 560 v~~~~~~~~~~~~~~~~ 576 (589)
|.|++.+.++....|+.
T Consensus 543 v~~~~~~~~~~~~~~~~ 559 (568)
T 2c31_A 543 AMIDPDAGVESGRIKSL 559 (568)
T ss_dssp EEBCTTSSCC-------
T ss_pred EEeccccCCCccccccc
Confidence 99999998876554443
No 22
>3hww_A 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene- carboxylate synthase; menaquinone, THDP, Mg, vitamin K2, carboxylase, magnesium; HET: AKG; 1.95A {Escherichia coli k-12} PDB: 3flm_A* 3hwx_A* 2jlc_A* 2jla_A*
Probab=100.00 E-value=3.1e-83 Score=706.21 Aligned_cols=519 Identities=15% Similarity=0.094 Sum_probs=399.2
Q ss_pred cccHHHHHHHHHHHcCCCEEEecCCcchHHHHHhhhcCCCCeEEecCchhHHHHhhhhhhhccCc-eEEEEeCCcchHHH
Q 007800 26 VGTLGRHLARRLVEIGAKDVFSVPGDFNLTLLDHLIAEPELNLVGCCNELNAGYAADGYARSRGV-GACVVTFTVGGLSV 104 (589)
Q Consensus 26 ~~~~a~~i~~~L~~~GV~~vfg~pG~~~~~l~~al~~~~~i~~v~~~hE~~A~~~A~gyar~tg~-~v~~~t~GpG~~n~ 104 (589)
.++++|+|++.|+++||++|||+||+++.+|+++|.+++++++|.++||++|+|||+||||+||+ +||++|+|||++|+
T Consensus 7 ~~~~a~~lv~~L~~~GV~~vFg~PG~~~~~l~dal~~~~~i~~i~~~hE~~Aa~~AdGyAr~tG~pgv~~~TsGpG~~N~ 86 (556)
T 3hww_A 7 NRRWAAVILEALTRHGVRHICIAPGSRSTLLTLAAAENSAFIHHTHFDERGLGHLALGLAKVSKQPVAVIVTSGTAVANL 86 (556)
T ss_dssp HHHHHHHHHHHHHTTTCCEEEECCCTTSHHHHHHHHHCTTCEEEECSCHHHHHHHHHHHHHHHCSCEEEEECSSHHHHTT
T ss_pred hhHHHHHHHHHHHHCCCCEEEEcCCCCcHHHHHHHhhCCCceEEEecCCcHHHHHHHHHHHhhCCCEEEEECCCcHHHhh
Confidence 37899999999999999999999999999999999876789999999999999999999999999 99999999999999
Q ss_pred HHHHHHhhhcCCcEEEEeCCCCccccCCccceeeecCCCChHHHHHhhhcceeEEEEeCChhh------HHHHHHHHHHH
Q 007800 105 LNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCFQAITCSQAVVNNLGD------AHELIDTAIST 178 (589)
Q Consensus 105 ~~~l~~A~~~~~PllvI~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tk~~~~v~~~~~------~~~~l~~A~~~ 178 (589)
++||++||.+++|||+|||+++....+++. . |..||..+|+++|||++++.++++ +++.|++|++
T Consensus 87 ~~gia~A~~d~vPll~itG~~~~~~~g~~~-----~---Q~~d~~~~~~~~tk~~~~v~~~~~~~~~~~i~~~i~~A~~- 157 (556)
T 3hww_A 87 YPALIEAGLTGEKLILLTADRPPELIDCGA-----N---QAIRQPGMFASHPTHSISLPRPTQDIPARWLVSTIDHALG- 157 (556)
T ss_dssp HHHHHHHHHHCCCEEEEEEECCGGGSSSSC-----T---TCCCCTTTTTTCSSEEEECCCCCTTSCHHHHHHHHHHHHH-
T ss_pred hHHHHHHHHhCCCeEEEeCCCCHHHhccCC-----C---ccccHHHHHhhheeEEEecCCCcccccHHHHHHHHHHHHh-
Confidence 999999999999999999999998777652 2 235789999999999999998875 7777777773
Q ss_pred hHhcCCcEEEEeCCCCCCCCCCCCCC----CCCCc---cCCCCCCChhhHHHHH-HHHHHHHHhcCCCEEEeCcccchhh
Q 007800 179 ALKESKPVYISISCNLPGIPHPTFAR----DPVPF---FLAPKVSNQLGLEAAV-EATADFLNKAVKPVLVGGPNIRVAK 250 (589)
Q Consensus 179 a~~~~gPV~i~iP~dv~~~~~~~~~~----~~~~~---~~~~~~~~~~~~~~~i-~~~~~~L~~a~rpviv~G~g~~~~~ 250 (589)
..+||||||+||.|++......... .+... ...+.... . ....+ ++++.+|.+||||+|++|.+ +++
T Consensus 158 -~~r~GPV~i~iP~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~l~~A~rPvIl~G~~--~~~ 232 (556)
T 3hww_A 158 -TLHAGGVHINCPFAEPLYGEMDDTGLSWQQRLGDWWQDDKPWLRE-A-PRLESEKQRDWFFWRQKRGVVVAGRM--SAE 232 (556)
T ss_dssp -SCCSSCEEEEEECCSCCSCCCSSTTHHHHHTTGGGGGCCSCSSCC-C-CCCCCCCCTTHHHHTTSCEEEEECBC--CHH
T ss_pred -cCCCCCEEEeCCcCCCCCCCccccccccccccccccccccccccc-c-ccccchhhhhhhhccCCCeEEEECCC--ChH
Confidence 1347999999999975421111000 00000 00010000 0 00111 23456788999999999984 456
Q ss_pred HHHHHHHHHHHhCCceEEccC-CccCCCCCCCCceeeecCCCCCHHHHHHhhhcCEEEEeCCCcCCcccccccccCCCCc
Q 007800 251 AQKAFIELADATGYPIAIMPS-GKGLVPEHHPHFIGTYWGAVSSSFCGEIVESADAYVFVGPIFNDYSSVGYSLLIKKEK 329 (589)
Q Consensus 251 ~~~~l~~lae~~~~Pv~tt~~-~~g~~~~~~pl~~G~~~g~~~~~~~~~~l~~aD~vl~lG~~~~~~~~~~~~~~~~~~~ 329 (589)
+.+++.+|+|++++||++|++ ++|.++++||+++| ++.+++++++||+||+||+++++..+..|....+..+
T Consensus 233 a~~~l~~lae~~~~PV~~t~~~~~~~~~~~~~~~lg-------~~~~~~~~~~aDlvl~iG~~~~~~~~~~~~~~~~~~~ 305 (556)
T 3hww_A 233 EGKKVALWAQTLGWPLIGDVLSQTGQPLPCADLWLG-------NAKATSELQQAQIVVQLGSSLTGKRLLQWQASCEPEE 305 (556)
T ss_dssp HHHHHHHHHHHHTCCEEECTTTCSCCSSCCHHHHTT-------SHHHHHHHTTCSEEEEESBCCCCHHHHHHHHHCCCSE
T ss_pred HHHHHHHHHHhcCCEEEEccCCCCCCCcCcHHHHhc-------CchhhhcccCCCEEEEcCCCcccHHHHHHHhcCCCCe
Confidence 899999999999999999985 88999999998765 3578899999999999999998876655654333448
Q ss_pred eEEEcCCceeecCCCccc----cccHHHHHHHHHHHhhcCch--hhhhhhhhcCCCCCCCCCCCCCCcCHHHHHHHHHhh
Q 007800 330 AIIVQPHRVTVGNGPSLG----WVFMADFLSALAKKLRKNTT--ALENYRRIYVPPGIPVKRAQNEPLRVNVLFKHIQDM 403 (589)
Q Consensus 330 ~i~id~d~~~~~~~~~~~----~~~~~~~l~~L~~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~L~~~ 403 (589)
+||||.|+.+++ +.+.. ..|++.+|++|.+.. ...+ .+..+++..... ....+.++++..+++.|++.
T Consensus 306 ~i~id~d~~~~~-~~~~~~~~i~~d~~~~l~~l~~~~-~~~w~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~l~~~ 379 (556)
T 3hww_A 306 YWIVDDIEGRLD-PAHHRGRRLIANIADWLELHPAEK-RQPWCVEIPRLAEQAMQA----VIARRDAFGEAQLAHRICDY 379 (556)
T ss_dssp EEEEESSCSCCC-TTCCSEEEEESCHHHHHHHSCCCC-CCCCCSSHHHHHHHHHHH----HHTTCCSSSHHHHHHTGGGT
T ss_pred EEEECCCCccCC-CCCCceEEEEcCHHHHHHhccccc-chHHHHHHHHHHHHHHHH----HhhcccCcCHHHHHHHHHHh
Confidence 999999999887 33332 248899998864321 1111 111221110000 00123579999999999999
Q ss_pred CCCCCEEEecCCccccccc-cccccCCCeeEecc-CccchhhHHHHHHHHhhhcCCCcEEEEEcchhhcccHHHHHHHHH
Q 007800 404 LSGDTAVIAETGDSWFNCQ-KLRLPENCGYEFQM-QYGSIGWSVGATLGYAQAAKDKRVIACIGDGSFQVTAQEISTMIR 481 (589)
Q Consensus 404 l~~~~iiv~d~G~~~~~~~-~~~~~~~~~~~~~~-~~g~mG~~l~~aiGaala~~~~~vv~i~GDGsf~~~~~el~ta~~ 481 (589)
+|++++++.|.++...+.. +...+...+++.+. ..|.||+ +|+|+|++++ ++++||+++|||+|+|+++||+|+++
T Consensus 380 l~~~~iv~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~g~~G~-l~~A~Gaa~a-~~~~vv~i~GDGsf~~~~~eL~ta~~ 457 (556)
T 3hww_A 380 LPEQGQLFVGNSLVVRLIDALSQLPAGYPVYSNRGASGIDGL-LSTAAGVQRA-SGKPTLAIVGDLSALYDLNALALLRQ 457 (556)
T ss_dssp CCTTCEEEECSSHHHHHHHHHCCCCTTCCEEECCSSCCSSSH-HHHHHHHHHH-HCCCEEEEEEHHHHHHTGGGHHHHTT
T ss_pred CCCCCeEEEeCCcHHHHHHHhccCCCCceEEecCcccccccH-HHHHHHHHhc-CCCcEEEEEccHHhhhcchhhHhhcc
Confidence 9999999987665432221 11224344567664 4667788 9999999999 79999999999999999999999999
Q ss_pred hCCCeEEEEEeCCchhhhhhhc------CCCCCCCCCCChHHHHHHccCCCCCccEEEeCCHHHHHHHHHHhhhcCCCCe
Q 007800 482 CGQRSIIFLINNGGYTIEVEIH------DGPYNVIKNWDYTGLVNAIHNGEGKCWTAKVRSEDELTEAMKTATGEQKDSL 555 (589)
Q Consensus 482 ~~l~v~ivv~nN~~~~~~~~~~------~~~~~~~~~~d~~~la~a~G~~~~~~~~~~v~~~~~l~~al~~a~~~~~~gp 555 (589)
+++|+++||+||++|++...+. ...+....++||.++|++||+ ++++|++.++|+++|+++++ .+||
T Consensus 458 ~~lpv~ivv~NN~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~a~a~G~-----~~~~v~~~~~l~~al~~a~~--~~gp 530 (556)
T 3hww_A 458 VSAPLVLIVVNNNGGQIFSLLPTPQSERERFYLMPQNVHFEHAAAMFEL-----KYHRPQNWQELETAFADAWR--TPTT 530 (556)
T ss_dssp CSSCEEEEEEESCC-----------------CCCCCCCCSHHHHHHTTC-----EEECCSSHHHHHHHHHHHTT--SSSE
T ss_pred cCCCcEEEEEECCCCCcccCCCCcchhHHHhccCCCCCCHHHHHHHcCC-----cEEecCCHHHHHHHHHHHHh--CCCC
Confidence 9999999999999999843221 112344568999999999999 99999999999999999986 8899
Q ss_pred EEEEEEcCCCCChHHHHHHHHHhhh
Q 007800 556 CFIEVFVHKDDTSKELLEWGSRVSA 580 (589)
Q Consensus 556 ~viev~~~~~~~~~~~~~~~~~~~~ 580 (589)
+||||.+++++.++.++++.+.++.
T Consensus 531 ~liev~~~~~~~~~~l~~~~~~~~~ 555 (556)
T 3hww_A 531 TVIEMVVNDTDGAQTLQQLLAQVSH 555 (556)
T ss_dssp EEEEEECCSSHHHHHHHHHHHHHHT
T ss_pred EEEEEECCccccHHHHHHHHHHhhc
Confidence 9999999999999999999998764
No 23
>3cf4_G Acetyl-COA decarboxylase/synthase epsilon subunit; methanomicrobia, iron-nikel-sulfur, 4Fe-NI-4S, oxidoreductas; 2.00A {Methanosarcina barkeri}
Probab=99.78 E-value=1.3e-20 Score=174.14 Aligned_cols=137 Identities=17% Similarity=0.154 Sum_probs=113.4
Q ss_pred HHHHHHHHHHhcCCCEEEeCcccchhhHHHHHHHHHHHhCCceEEccCCccCCCCCCC--Cc--eeeecCCCCCHHHH--
Q 007800 224 AVEATADFLNKAVKPVLVGGPNIRVAKAQKAFIELADATGYPIAIMPSGKGLVPEHHP--HF--IGTYWGAVSSSFCG-- 297 (589)
Q Consensus 224 ~i~~~~~~L~~a~rpviv~G~g~~~~~~~~~l~~lae~~~~Pv~tt~~~~g~~~~~~p--l~--~G~~~g~~~~~~~~-- 297 (589)
.+++++++|++||||+|++|+|+.++++.+++.+|+|++++||++|++|||.||++|| ++ +|.+ |..++..++
T Consensus 23 ~v~~aa~~L~~AkrPvil~G~g~~~~~a~~~l~~lae~~~iPV~~t~~gkg~~~~~hp~~~~~~~G~~-G~~~~~~~~~~ 101 (170)
T 3cf4_G 23 SPEMAAKIISKAKRPLLMVGTLALDPELLDRVVKISKAANIPIAATGSSLAVLADKDVDAKYINAHML-GFYLTDPKWPG 101 (170)
T ss_dssp CHHHHHHHHHHCSSEEEEECSTTCCHHHHHHHHHHHHHHTCCEEECTTTHHHHTTSSSCEEECCHHHH-HHHTTCTTCCC
T ss_pred HHHHHHHHHHcCCCCEEEECCCccchhHHHHHHHHHHHhCCCEEECcccCcccCCCChhhhcceeeec-cccCChhhhhH
Confidence 4889999999999999999999999899999999999999999999999999999999 99 8874 555555666
Q ss_pred -HHhhhcCEEEEeCCCc--CCcccccccccCCCCceEEEcCCceeecCCCccccccHHHHHHHHHHHhh
Q 007800 298 -EIVESADAYVFVGPIF--NDYSSVGYSLLIKKEKAIIVQPHRVTVGNGPSLGWVFMADFLSALAKKLR 363 (589)
Q Consensus 298 -~~l~~aD~vl~lG~~~--~~~~~~~~~~~~~~~~~i~id~d~~~~~~~~~~~~~~~~~~l~~L~~~l~ 363 (589)
+++++||+||++|+++ ++..+..|..+.+ .++|+++.+..... ...+..+..+++|+.|.+.+.
T Consensus 102 ~~~~~~aDlvl~iG~~~~~~~~~t~~~~~~~~-~~iI~i~~~~~~~~-~~~~~~l~~~~~l~~L~~~~~ 168 (170)
T 3cf4_G 102 LDGNGNYDMIITIGFKKFYINQVLSAAKNFSN-LKTIAIERGYIQNA-TMSFGNLSKADHYAALDELIN 168 (170)
T ss_dssp SSSSCCCSEEEEESCCHHHHHHHHHHHHHHCC-CCEEECSSSCCTTS-SEECCCCCHHHHHHHHHHHHH
T ss_pred HHHhhcCCEEEEECCccCccccccccccccCC-CeEEEECCCcccch-hhhhccCCHHHHHHHHHHHHh
Confidence 7889999999999999 8887777766656 78886655432111 234566678999999987653
No 24
>2c42_A Pyruvate-ferredoxin oxidoreductase; 4Fe-4S, iron, iron-sulfur, iron-sulfur cluster, pyruvate catabolism, TPP-dependent enzyme; HET: TPP; 1.78A {Desulfovibrio africanus} SCOP: c.36.1.8 c.36.1.12 c.48.1.3 c.64.1.1 d.58.1.5 PDB: 1b0p_A* 1kek_A* 2c3o_A* 2c3p_A* 2c3u_A* 2c3y_A* 2c3m_A* 2pda_A* 2uza_A*
Probab=99.77 E-value=1.5e-18 Score=203.48 Aligned_cols=170 Identities=12% Similarity=0.154 Sum_probs=137.1
Q ss_pred CcCHHHHHHHHHhhCCCCCEEEecCCcccccc-cccccc----C---CCeeEecc--CccchhhHHHH------------
Q 007800 390 PLRVNVLFKHIQDMLSGDTAVIAETGDSWFNC-QKLRLP----E---NCGYEFQM--QYGSIGWSVGA------------ 447 (589)
Q Consensus 390 ~i~~~~~~~~L~~~l~~~~iiv~d~G~~~~~~-~~~~~~----~---~~~~~~~~--~~g~mG~~l~~------------ 447 (589)
.|.+..+++.|.+.++++.+|+.|+||+.+|. .++..| + ...|..+. +.+.||+|+++
T Consensus 813 GCge~~~ik~l~ql~g~~~iian~tGc~siw~~~~~~~~~~~~~~g~~p~~~~Slf~~~a~mG~G~~~~~~~~~~~~~~~ 892 (1231)
T 2c42_A 813 GCGETPYVRVITQLFGERMFIANATGCSSIWGASAPSMPYKTNRLGQGPAWGNSLFEDAAEYGFGMNMSMFARRTHLADL 892 (1231)
T ss_dssp TCSSHHHHHHHHHHHGGGEEEEECSSHHHHHHHBTTCCCBCCCTTSCCCEEECCCSTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHhcCCCeEEEecCchHHHHHhhcccCCcccccCCCCcceecccCcchHHHHHHHHHHHHHHHHHHHHH
Confidence 36678899999999999999999999998874 332222 1 12466553 67999999999
Q ss_pred ---------------HH--------------------HHhhhcCC----------------CcEEEEEcch-hhcccHHH
Q 007800 448 ---------------TL--------------------GYAQAAKD----------------KRVIACIGDG-SFQVTAQE 475 (589)
Q Consensus 448 ---------------ai--------------------Gaala~~~----------------~~vv~i~GDG-sf~~~~~e 475 (589)
|| |++++.++ ++||+|+||| +|.|+++|
T Consensus 893 ~~~~~~~~~~~~~~~Ai~~w~~~~~~~~~~~~~~~~~~a~l~~~~~~~~~~~~~~~~~~~~~~Vv~i~GDG~~~~mg~~e 972 (1231)
T 2c42_A 893 AAKALESDASGDVKEALQGWLAGKNDPIKSKEYGDKLKKLLAGQKDGLLGQIAAMSDLYTKKSVWIFGGDGWAYDIGYGG 972 (1231)
T ss_dssp HHHHHTTTCCHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHTTTCCSHHHHHHHTTGGGTSCCEEEEEEEHHHHHTTTHHH
T ss_pred HHHHhhccccHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHhcCCchHHHHHhhhhhhccCCcEEEEeCcHHHHHcchHH
Confidence 99 99997443 7899999999 99999999
Q ss_pred HHHHHHhCCCeEEEEEeCCchhhhhhhcC---C--CC-------CCCCCCChHHHHHHccCCCCCccEEE---e-CCHHH
Q 007800 476 ISTMIRCGQRSIIFLINNGGYTIEVEIHD---G--PY-------NVIKNWDYTGLVNAIHNGEGKCWTAK---V-RSEDE 539 (589)
Q Consensus 476 l~ta~~~~l~v~ivv~nN~~~~~~~~~~~---~--~~-------~~~~~~d~~~la~a~G~~~~~~~~~~---v-~~~~~ 539 (589)
|.|++++++|+++||+||+.|++...+.. . .. ....++||.++|++||+ .++. + +++++
T Consensus 973 L~ta~~~~~~v~iiVlnN~~yg~tg~Q~s~~t~~~~~t~~~~~g~~~~~~D~~~iA~a~G~-----~~va~~~v~~~~~~ 1047 (1231)
T 2c42_A 973 LDHVLASGEDVNVFVMDTEVYSNTGGQSSKATPTGAVAKFAAAGKRTGKKDLARMVMTYGY-----VYVATVSMGYSKQQ 1047 (1231)
T ss_dssp HHHHHHTTCSCEEEEEECSSBTTTTCBCCTTSCTTCCBBTBTTCCSSCCCCHHHHHHTTSS-----SEEEEECTTTCHHH
T ss_pred HHHHHHhCCCeEEEEEECHHHHhHHhhhccCCCCCceeeecccCCCCCchhHHHHHHHCCC-----CEEEEEeccCCHHH
Confidence 99999999999999999999999321110 1 11 12245899999999999 7764 3 59999
Q ss_pred HHHHHHHhhhcCCCCeEEEEEEcCCCC
Q 007800 540 LTEAMKTATGEQKDSLCFIEVFVHKDD 566 (589)
Q Consensus 540 l~~al~~a~~~~~~gp~viev~~~~~~ 566 (589)
|.++|+++++ .+||+||||.+++..
T Consensus 1048 l~~al~eAl~--~~GP~lI~v~~~c~~ 1072 (1231)
T 2c42_A 1048 FLKVLKEAES--FPGPSLVIAYATCIN 1072 (1231)
T ss_dssp HHHHHHHHHH--SSSCEEEEEECCCGG
T ss_pred HHHHHHHHHh--cCCCEEEEEeecCcc
Confidence 9999999997 899999999999864
No 25
>1yd7_A 2-keto acid:ferredoxin oxidoreductase subunit alpha; structural genomics, southeast collaboratory for structural genomics, secsg; 2.30A {Pyrococcus furiosus}
Probab=99.64 E-value=3.7e-16 Score=163.50 Aligned_cols=165 Identities=13% Similarity=0.038 Sum_probs=126.6
Q ss_pred CCcccHHHHHHHHHHHcCCCEEEecCCcchHHHHHhhhc---CCCCeEEecCchhHHHHhhhhhhhccCceEEEEeCCcc
Q 007800 24 ASVGTLGRHLARRLVEIGAKDVFSVPGDFNLTLLDHLIA---EPELNLVGCCNELNAGYAADGYARSRGVGACVVTFTVG 100 (589)
Q Consensus 24 ~~~~~~a~~i~~~L~~~GV~~vfg~pG~~~~~l~~al~~---~~~i~~v~~~hE~~A~~~A~gyar~tg~~v~~~t~GpG 100 (589)
...++|+++|++.+.+.|++++||+||++..++++.|.+ ..+++++.+.||.+|+.||.|+++.++| +++.|+|||
T Consensus 20 ~~~~~GneAva~~~~~ag~~~v~~yPgtP~t~i~~~l~~~~~~~g~~~i~~e~E~~a~~~a~Gaa~aG~r-~~~~ts~~G 98 (395)
T 1yd7_A 20 PDFIQGDEAIARAAILAGCRFYAGYPITPASEIFEAMALYMPLVDGVVIQMEDEIASIAAAIGASWAGAK-AMTATSGPG 98 (395)
T ss_dssp EEEEEHHHHHHHHHHHHTCCEEEECCBTTTBCHHHHHHHHGGGGTCEEEECSCHHHHHHHHHHHHHTTCC-EEEEEETTH
T ss_pred eEEeEHHHHHHHHHHHcCCCEEEEEECcchHHHHHHHHHhhhhcCcEEEEeCCHHHHHHHHHHHHHhCCc-EEEEeCchH
Confidence 346899999999999999999999999999999998864 3469999999999999999999999888 444789999
Q ss_pred hHHHHHHHHHhhhcCCcEEEEeCCCCccccCCccceeeecCCCChHHHHH-h-hh--cceeEEEEeCChhhHHHHHHHHH
Q 007800 101 GLSVLNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQELR-C-FQ--AITCSQAVVNNLGDAHELIDTAI 176 (589)
Q Consensus 101 ~~n~~~~l~~A~~~~~PllvI~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~--~~tk~~~~v~~~~~~~~~l~~A~ 176 (589)
+++++.+|.++...++|+++++++++....+.. ..+ +..|... . .. ++.+....+.+++++..++..||
T Consensus 99 ~~~~~d~l~~aa~~~~P~Vi~~~~~~~~~~g~~-----~~~--~~sd~~~~~~~~~g~~g~~vl~p~~~qea~~l~~~A~ 171 (395)
T 1yd7_A 99 FSLMQENIGYAVMTETPVVIVDVQRSGPSTGQP-----TLP--AQGDIMQAIWGTHGDHSLIVLSPSTVQEAFDFTIRAF 171 (395)
T ss_dssp HHHHTTTCC----CCCCEEEEEEC---------------------------------CCCCEEECCCSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCEEEEEeeCCCCCCCCC-----ccc--chhHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHHH
Confidence 999999999999999999999998776532211 111 1111111 1 22 55788899999999999999999
Q ss_pred HHhHhcCCcEEEEeCCCCCC
Q 007800 177 STALKESKPVYISISCNLPG 196 (589)
Q Consensus 177 ~~a~~~~gPV~i~iP~dv~~ 196 (589)
++|...+.||.+.+|.++.+
T Consensus 172 ~lA~~~~~PVi~~~~~~l~h 191 (395)
T 1yd7_A 172 NLSEKYRTPVILLTDAEVGH 191 (395)
T ss_dssp HHHHHHTSEEEEEECHHHHH
T ss_pred HHHHHHCCCEEEEcchhHhC
Confidence 99998889999999988754
No 26
>1w85_A Pyruvate dehydrogenase E1 component, alpha subunit; dehydrogenase, multienzyme complex, oxidoreductase; HET: TDP; 2.0A {Geobacillus stearothermophilus} SCOP: c.36.1.11 PDB: 3duf_A* 3dv0_A* 3dva_A* 1w88_A*
Probab=99.63 E-value=5.6e-16 Score=159.95 Aligned_cols=121 Identities=17% Similarity=0.080 Sum_probs=100.1
Q ss_pred eccCccchhhHHHHHHHHhhhcC----CCcEEEEEcchhhccc--HHHHHHHHHhCCCeEEEEEeCCchhhhhhhcCCCC
Q 007800 434 FQMQYGSIGWSVGATLGYAQAAK----DKRVIACIGDGSFQVT--AQEISTMIRCGQRSIIFLINNGGYTIEVEIHDGPY 507 (589)
Q Consensus 434 ~~~~~g~mG~~l~~aiGaala~~----~~~vv~i~GDGsf~~~--~~el~ta~~~~l~v~ivv~nN~~~~~~~~~~~~~~ 507 (589)
...+.|+||+++|.|+|+++|.+ ++.|||++|||+|.+. ..+|.+++++++|+++||.||+ |++.... .
T Consensus 137 ~~~~~g~lG~~lp~AvG~A~A~~~~~~~~~vv~i~GDGa~~~G~~~Eal~~A~~~~lpvi~vv~NN~-~gi~~~~----~ 211 (368)
T 1w85_A 137 VLPPQIIIGAQYIQAAGVALGLKMRGKKAVAITYTGDGGTSQGDFYEGINFAGAFKAPAIFVVQNNR-FAISTPV----E 211 (368)
T ss_dssp BCCCCCSTTHHHHHHHHHHHHHHHTTCSCCEEEEEETGGGGSHHHHHHHHHHHHTTCCEEEEEEECS-EETTEEG----G
T ss_pred cCCCccccCccccHHHHHHHHhHhhCCCCeEEEEEchhhhhhcHHHHHHHHHHHHCcCEEEEEEcCC-ccceecc----c
Confidence 34567999999999999999974 7899999999999985 4579999999999888888885 8872111 1
Q ss_pred CCCCCCChHHHHHHccCCCCCccEEEeC--CHHHHHHHHHHhhh--cCCCCeEEEEEEcCC
Q 007800 508 NVIKNWDYTGLVNAIHNGEGKCWTAKVR--SEDELTEAMKTATG--EQKDSLCFIEVFVHK 564 (589)
Q Consensus 508 ~~~~~~d~~~la~a~G~~~~~~~~~~v~--~~~~l~~al~~a~~--~~~~gp~viev~~~~ 564 (589)
......||.++|++||+ ++++|+ |++++.++++++++ ++.+||+|||+.|.+
T Consensus 212 ~~~~~~d~~~~a~a~G~-----~~~~VdG~D~~av~~a~~~A~~~~r~~~gP~lIe~~t~r 267 (368)
T 1w85_A 212 KQTVAKTLAQKAVAAGI-----PGIQVDGMDPLAVYAAVKAARERAINGEGPTLIETLCFR 267 (368)
T ss_dssp GTCSCSCSGGGGGGTTC-----CEEEEETTCHHHHHHHHHHHHHHHHTTSCCEEEEEECCC
T ss_pred cccCCCCHHHHHHHCCC-----CEEEEcCCCHHHHHHHHHHHHHHHHhcCCCEEEEEEeec
Confidence 11245799999999999 899997 79999999999985 346899999999975
No 27
>2bfd_A 2-oxoisovalerate dehydrogenase alpha subunit; oxidoreductase, multi-enzyme complex, acylation, oxidative decarboxylation, maple syrup urine disease; HET: TDP; 1.39A {Homo sapiens} SCOP: c.36.1.11 PDB: 1v16_A* 2bfc_A* 1v1r_A* 1olu_A* 2bfb_A* 1v1m_A* 2bew_A* 1dtw_A* 1olx_A* 1ols_A* 1wci_A* 1x80_A* 2beu_A* 1u5b_A* 2bev_A* 1v11_A* 1x7x_A* 1x7y_A* 1x7w_A* 1x7z_A* ...
Probab=99.61 E-value=7.9e-16 Score=160.59 Aligned_cols=119 Identities=18% Similarity=0.172 Sum_probs=99.2
Q ss_pred cCccchhhHHHHHHHHhhhcC----CCcEEEEEcchhhcccH--HHHHHHHHhCCCeEEEEEeCCchhhhhhhcCCCCCC
Q 007800 436 MQYGSIGWSVGATLGYAQAAK----DKRVIACIGDGSFQVTA--QEISTMIRCGQRSIIFLINNGGYTIEVEIHDGPYNV 509 (589)
Q Consensus 436 ~~~g~mG~~l~~aiGaala~~----~~~vv~i~GDGsf~~~~--~el~ta~~~~l~v~ivv~nN~~~~~~~~~~~~~~~~ 509 (589)
...|+||+++|.|+|+++|.+ ++.|||++|||+|+++. .+|.+|.++++|+++||.|| +|++.... ...
T Consensus 159 ~~~g~lG~~lp~AvG~AlA~~~~~~~~~vv~~~GDGa~~~G~~~Eal~~A~~~~lpvi~vv~NN-~~~i~~~~----~~~ 233 (400)
T 2bfd_A 159 TISSPLATQIPQAVGAAYAAKRANANRVVICYFGEGAASEGDAHAGFNFAATLECPIIFFCRNN-GYAISTPT----SEQ 233 (400)
T ss_dssp CCCSSTTTHHHHHHHHHHHHHHHTCCCCEEEEEETTGGGSHHHHHHHHHHHHTTCCEEEEEEEC-SEETTEEG----GGT
T ss_pred ccCccccccccHHHHHHHhhhhhCCCCeEEEEECchhhhcChHHHHHHHHHHHCcCEEEEEECC-ceeeeecc----ccc
Confidence 455999999999999999987 89999999999999976 99999999999988888888 78872111 011
Q ss_pred CCCCChHHHHHHccCCCCCccEEEeC--CHHHHHHHHHHhhh--cCCCCeEEEEEEcCC
Q 007800 510 IKNWDYTGLVNAIHNGEGKCWTAKVR--SEDELTEAMKTATG--EQKDSLCFIEVFVHK 564 (589)
Q Consensus 510 ~~~~d~~~la~a~G~~~~~~~~~~v~--~~~~l~~al~~a~~--~~~~gp~viev~~~~ 564 (589)
....|+.++|++||+ ++++|+ |++++.+++++|++ +..++|+|||++|.+
T Consensus 234 ~~~~d~~~~a~a~G~-----~~~~VdG~D~~av~~a~~~A~~~ar~~~~P~lIe~~tyR 287 (400)
T 2bfd_A 234 YRGDGIAARGPGYGI-----MSIRVDGNDVFAVYNATKEARRRAVAENQPFLIEAMTYR 287 (400)
T ss_dssp CSSSTTGGGTGGGTC-----EEEEEETTCHHHHHHHHHHHHHHHHHHTCCEEEEEECCC
T ss_pred CCCCCHHHHHHHcCC-----cEEEEeCCCHHHHHHHHHHHHHHHHhCCCCEEEEEEeee
Confidence 245799999999999 899987 78899999998874 235799999999954
No 28
>1qs0_A 2-oxoisovalerate dehydrogenase alpha-subunit; heterotetramer, THDP cofactor, oxidoreductase; HET: TDP; 2.40A {Pseudomonas putida} SCOP: c.36.1.11 PDB: 2bp7_A
Probab=99.59 E-value=3.1e-15 Score=156.00 Aligned_cols=119 Identities=16% Similarity=0.096 Sum_probs=95.9
Q ss_pred cCccchhhHHHHHHHHhhhc----CCCcEEEEEcchhhccc--HHHHHHHHHhCCCeEEEEEeCCchhhhhhhcCCCCCC
Q 007800 436 MQYGSIGWSVGATLGYAQAA----KDKRVIACIGDGSFQVT--AQEISTMIRCGQRSIIFLINNGGYTIEVEIHDGPYNV 509 (589)
Q Consensus 436 ~~~g~mG~~l~~aiGaala~----~~~~vv~i~GDGsf~~~--~~el~ta~~~~l~v~ivv~nN~~~~~~~~~~~~~~~~ 509 (589)
...|+||+++|.|+|+++|. +++.|||++|||++.+. ..+|.+++++++|+++|| ||++|++.... . ..
T Consensus 178 ~~~g~lG~~lp~AvGaA~A~k~~~~~~~vv~i~GDGa~~~G~~~Eal~~A~~~~lpvi~Vv-~NN~~gi~~~~-~---~~ 252 (407)
T 1qs0_A 178 TISGNLATQFVQAVGWAMASAIKGDTKIASAWIGDGATAESDFHTALTFAHVYRAPVILNV-VNNQWAISTFQ-A---IA 252 (407)
T ss_dssp CCCSSSSHHHHHHHHHHHHHHHTTCCCCEEEEEETGGGGSHHHHHHHHHHHHHTCCEEEEE-EECSEETTEEG-G---GG
T ss_pred ccccccccchhHHHHHHHHHHHhCCCCEEEEEECCchhhcChHHHHHHHHHHHCcCEEEEE-ECCCcceeecc-c---cc
Confidence 34799999999999999985 47899999999999985 578999999999955555 55579882111 0 11
Q ss_pred C-CCCChHHHHHHccCCCCCccEEEeC--CHHHHHHHHHHhhh--cCCCCeEEEEEEcCC
Q 007800 510 I-KNWDYTGLVNAIHNGEGKCWTAKVR--SEDELTEAMKTATG--EQKDSLCFIEVFVHK 564 (589)
Q Consensus 510 ~-~~~d~~~la~a~G~~~~~~~~~~v~--~~~~l~~al~~a~~--~~~~gp~viev~~~~ 564 (589)
. ...||.++|++||+ ++++|+ |++++.+++++|++ +..+||+|||+.|.+
T Consensus 253 ~~~~~d~a~~a~a~G~-----~~~~VdG~D~~av~~a~~~A~~~ar~~~gP~lIe~~t~R 307 (407)
T 1qs0_A 253 GGESTTFAGRGVGCGI-----ASLRVDGNDFVAVYAASRWAAERARRGLGPSLIEWVTYR 307 (407)
T ss_dssp TTTTCCSTHHHHHTTC-----EEEEEETTCHHHHHHHHHHHHHHHHTTSCCEEEEEECCC
T ss_pred cCCCCCHHHHHHHcCC-----eEEEEcCCCHHHHHHHHHHHHHHHHhcCCCEEEEEEeec
Confidence 1 35799999999999 999997 78899999998875 346899999999975
No 29
>2o1x_A 1-deoxy-D-xylulose-5-phosphate synthase; thiamin, isoprenoid, DXS, transferase; HET: TDP; 2.90A {Deinococcus radiodurans}
Probab=99.59 E-value=2.9e-15 Score=166.25 Aligned_cols=171 Identities=16% Similarity=0.186 Sum_probs=118.3
Q ss_pred cCHHHHHHHHHhhCC-CCCEEEecCCccc----cccc---cccccCC-C----------eeEeccCccchhhHHHHHHHH
Q 007800 391 LRVNVLFKHIQDMLS-GDTAVIAETGDSW----FNCQ---KLRLPEN-C----------GYEFQMQYGSIGWSVGATLGY 451 (589)
Q Consensus 391 i~~~~~~~~L~~~l~-~~~iiv~d~G~~~----~~~~---~~~~~~~-~----------~~~~~~~~g~mG~~l~~aiGa 451 (589)
+....++.+|...+. +++.++.|.|-.. ++.- .+...+. . ......+.|+||+++|+|+|+
T Consensus 56 lg~v~l~~aL~~~~~~~~D~~v~~~GH~~y~~~~l~G~~~~~~~~r~~~g~~G~p~~~~s~~~~~~~G~~G~gl~~AvG~ 135 (629)
T 2o1x_A 56 LGAVDIITALHYVLDSPRDRILFDVGHQAYAHKILTGRRDQMADIKKEGGISGFTKVSESEHDAITVGHASTSLTNALGM 135 (629)
T ss_dssp HHTHHHHHHHHHHSCTTTSEEEESSSTTCHHHHHTTTTGGGGGGTTSTTSCCSSCCGGGCTTCCSCCSSSSCHHHHHHHH
T ss_pred hhHHHHHHHHHhhcCCCCCeEEecCchHHHHHHHHhCcHhHHhCcccCCCCCCCCCCCCCCCCCcCCCcccccHhHHHHH
Confidence 444667777776666 7888899988522 1110 0111111 0 012356789999999999999
Q ss_pred hhhc----CCCcEEEEEcchhhc--ccHHHHHHHHHhCCCeEEEEEeCCchhhhh------hhc-----CCCCCCC----
Q 007800 452 AQAA----KDKRVIACIGDGSFQ--VTAQEISTMIRCGQRSIIFLINNGGYTIEV------EIH-----DGPYNVI---- 510 (589)
Q Consensus 452 ala~----~~~~vv~i~GDGsf~--~~~~el~ta~~~~l~v~ivv~nN~~~~~~~------~~~-----~~~~~~~---- 510 (589)
++|. ++++|||++|||+|. |..++|.+|+++++|++ +|+||++|++.. ... ...|..+
T Consensus 136 AlA~k~~~~~~~Vv~v~GDG~~~~G~~~EaL~~A~~~~~pli-~IvnnN~~~i~~~~~~~~~~~~~l~~~~~y~~~~~~~ 214 (629)
T 2o1x_A 136 ALARDAQGKDFHVAAVIGDGSLTGGMALAALNTIGDMGRKML-IVLNDNEMSISENVGAMNKFMRGLQVQKWFQEGEGAG 214 (629)
T ss_dssp HHHHHHHTCCCCEEEEEETTGGGSHHHHHHHHHHHHHCCSEE-EEEEECSBSSSBCCSSHHHHC----------------
T ss_pred HHHHHHhCCCCeEEEEEchhhhhccHHHHHHHHHHhhCCCEE-EEEECCCCCCCCChhHHHHHHHHHhhchhHHHHHHHH
Confidence 9994 789999999999999 67899999999999975 556777898711 110 0111110
Q ss_pred -------CC---------CCh-------H--HHHHHccCCCCCccEE-EeC--CHHHHHHHHHHhhhcCCCCeEEEEEEc
Q 007800 511 -------KN---------WDY-------T--GLVNAIHNGEGKCWTA-KVR--SEDELTEAMKTATGEQKDSLCFIEVFV 562 (589)
Q Consensus 511 -------~~---------~d~-------~--~la~a~G~~~~~~~~~-~v~--~~~~l~~al~~a~~~~~~gp~viev~~ 562 (589)
.. .|+ . +++++||+ ++. .|+ +.++|.++|+++.+ .++|+|||+.|
T Consensus 215 ~~~~~~~g~~~~~~~~~~~d~~~~~~~p~~~~~~ea~G~-----~~~g~vdG~d~~~l~~al~~A~~--~~~P~lI~v~t 287 (629)
T 2o1x_A 215 KKAVEAVSKPLADFMSRAKNSTRHFFDPASVNPFAAMGV-----RYVGPVDGHNVQELVWLLERLVD--LDGPTILHIVT 287 (629)
T ss_dssp -----------------------------CCCTTGGGTC-----EEEEEEESSCHHHHHHHHHHHTT--SSSEEEEEEEC
T ss_pred HHHHhccchHHHHHHHHHHHHHHhhcCcccchHHHhcCC-----eEEeeECCcCHHHHHHHHHHHHh--cCCCEEEEEEE
Confidence 00 143 3 78999999 887 775 99999999999986 78999999999
Q ss_pred CCCCChH
Q 007800 563 HKDDTSK 569 (589)
Q Consensus 563 ~~~~~~~ 569 (589)
.+..-.+
T Consensus 288 ~kg~G~~ 294 (629)
T 2o1x_A 288 TKGKGLS 294 (629)
T ss_dssp CTTTTCH
T ss_pred ecCCCCC
Confidence 8765544
No 30
>3l84_A Transketolase; TKT, structural genomics, center for structur genomics of infectious diseases, csgid, transferase; HET: MSE; 1.36A {Campylobacter jejuni} PDB: 3m6l_A* 3m34_A* 3m7i_A*
Probab=99.59 E-value=2.8e-15 Score=164.79 Aligned_cols=116 Identities=21% Similarity=0.281 Sum_probs=101.6
Q ss_pred CccchhhHHHHHHHHhhhcC-----------CCcEEEEEcchhhc--ccHHHHHHHHHhCCCeEEEEEeCCchhhhhhhc
Q 007800 437 QYGSIGWSVGATLGYAQAAK-----------DKRVIACIGDGSFQ--VTAQEISTMIRCGQRSIIFLINNGGYTIEVEIH 503 (589)
Q Consensus 437 ~~g~mG~~l~~aiGaala~~-----------~~~vv~i~GDGsf~--~~~~el~ta~~~~l~v~ivv~nN~~~~~~~~~~ 503 (589)
..|+||+++|+|+|+++|.+ +++|+|++|||+++ |+.++|.+|.++++|.+++|+||++|++.....
T Consensus 112 ~tG~lG~gl~~AvG~AlA~~~~~~~~n~~~~d~~v~~v~GDG~~~eG~~~Eal~~A~~~~L~~livi~nnN~~~i~~~~~ 191 (632)
T 3l84_A 112 ATGPLGQGVANAVGFAMAAKKAQNLLGSDLIDHKIYCLCGDGDLQEGISYEACSLAGLHKLDNFILIYDSNNISIEGDVG 191 (632)
T ss_dssp CCCSTTHHHHHHHHHHHHHHHHHHHHCTTTCCCCEEEEEEHHHHHSHHHHHHHHHHHHTTCTTEEEEEEECSEETTEEGG
T ss_pred CCcchhhHHHHHHHHHHHHHhhccccccCCCCCeEEEEECCcchhhccHHHHHHHHHHcCCCcEEEEEECCCcccccchh
Confidence 45899999999999999987 89999999999999 789999999999999999999999998822111
Q ss_pred CCCCCCCCCCChHHHHHHccCCCCCccEEEeC--CHHHHHHHHHHhhhcCCCCeEEEEEEcCC
Q 007800 504 DGPYNVIKNWDYTGLVNAIHNGEGKCWTAKVR--SEDELTEAMKTATGEQKDSLCFIEVFVHK 564 (589)
Q Consensus 504 ~~~~~~~~~~d~~~la~a~G~~~~~~~~~~v~--~~~~l~~al~~a~~~~~~gp~viev~~~~ 564 (589)
.....|+.+++++||+ ++..|+ |.++|.++|+++.+ .++|+||+++|.+
T Consensus 192 -----~~~~~d~~~~~~a~G~-----~~~~vdGhd~~~l~~al~~A~~--~~~P~lI~v~T~k 242 (632)
T 3l84_A 192 -----LAFNENVKMRFEAQGF-----EVLSINGHDYEEINKALEQAKK--STKPCLIIAKTTI 242 (632)
T ss_dssp -----GTCCCCHHHHHHHTTC-----EEEEEETTCHHHHHHHHHHHHT--CSSCEEEEEECCT
T ss_pred -----hhcChhHHHHHHHcCC-----eEEEEeeCCHHHHHHHHHHHHh--CCCCEEEEEeeEe
Confidence 1135799999999999 888886 99999999999986 8899999999975
No 31
>1umd_A E1-alpha, 2-OXO acid dehydrogenase alpha subunit; alpha(2)beta(2) tetramer, structural genomics; HET: TDP; 1.90A {Thermus thermophilus} SCOP: c.36.1.11 PDB: 1um9_A* 1umc_A* 1umb_A*
Probab=99.58 E-value=4.7e-15 Score=153.60 Aligned_cols=115 Identities=16% Similarity=0.113 Sum_probs=85.7
Q ss_pred chhhHHHHHHHHhhhcCCCcEEEEEcchhhccc-HHH-HHHHHHhCCCeEEEEEeCCchhhhhhhcCCCCCCCCCCChHH
Q 007800 440 SIGWSVGATLGYAQAAKDKRVIACIGDGSFQVT-AQE-ISTMIRCGQRSIIFLINNGGYTIEVEIHDGPYNVIKNWDYTG 517 (589)
Q Consensus 440 ~mG~~l~~aiGaala~~~~~vv~i~GDGsf~~~-~~e-l~ta~~~~l~v~ivv~nN~~~~~~~~~~~~~~~~~~~~d~~~ 517 (589)
+||+++|+|+|++++.++++||+++|||+|.++ ++| |.+++++++|+++||.||+ |++..... ......||.+
T Consensus 149 ~l~~a~G~A~a~k~~~~~~~vv~i~GDGa~~~G~~~Eal~~A~~~~lpvi~vv~NN~-~gi~~~~~----~~~~~~d~~~ 223 (367)
T 1umd_A 149 HVPPAAGAAISMKLLRTGQVAVCTFGDGATSEGDWYAGINFAAVQGAPAVFIAENNF-YAISVDYR----HQTHSPTIAD 223 (367)
T ss_dssp THHHHHHHHHHHHHTTCCCCEEEEEETGGGGSHHHHHHHHHHHHTTCSEEEEEEECS-EETTEEHH----HHCSSSCSGG
T ss_pred hhhHHHHHHHHHHHhCCCCeEEEEEcccccccCcHHHHHHHHHHhCcCEEEEEecCC-eeeccChh----hccCCCCHHH
Confidence 344555555555555688999999999999998 999 9999999999888888888 99821110 0124579999
Q ss_pred HHHHccCCCCCccEEEeCCH--HHHHHHHHHhhh--cCCCCeEEEEEEcCC
Q 007800 518 LVNAIHNGEGKCWTAKVRSE--DELTEAMKTATG--EQKDSLCFIEVFVHK 564 (589)
Q Consensus 518 la~a~G~~~~~~~~~~v~~~--~~l~~al~~a~~--~~~~gp~viev~~~~ 564 (589)
+|++||+ ++++|+.. .++.++++++++ ...+||+|||+.|.+
T Consensus 224 ~a~a~G~-----~~~~Vdg~d~~av~~a~~~A~~~a~~~~gP~lIe~~t~r 269 (367)
T 1umd_A 224 KAHAFGI-----PGYLVDGMDVLASYYVVKEAVERARRGEGPSLVELRVYR 269 (367)
T ss_dssp GGGGTTS-----CEEEEETTCHHHHHHHHHHHHHHHHTTCCCEEEEEECCC
T ss_pred HHHHcCC-----cEEEeCCCCHHHHHHHHHHHHHHHHhcCCCEEEEEEeec
Confidence 9999999 89999754 444555554443 237899999999986
No 32
>1ytl_A Acetyl-COA decarboxylase/synthase complex epsilon 2; structural genomics; 1.80A {Archaeoglobus fulgidus} SCOP: c.31.1.6
Probab=99.58 E-value=1.6e-16 Score=145.59 Aligned_cols=104 Identities=12% Similarity=0.137 Sum_probs=84.7
Q ss_pred HHHH-HHHHHhcCCCEEEeCcccchhhHHHHHHHHHHHhCCceEEccCCccCCCC-CC-CCceeeecCCCCCHHHHHHh-
Q 007800 225 VEAT-ADFLNKAVKPVLVGGPNIRVAKAQKAFIELADATGYPIAIMPSGKGLVPE-HH-PHFIGTYWGAVSSSFCGEIV- 300 (589)
Q Consensus 225 i~~~-~~~L~~a~rpviv~G~g~~~~~~~~~l~~lae~~~~Pv~tt~~~~g~~~~-~~-pl~~G~~~g~~~~~~~~~~l- 300 (589)
++++ +++|++||||+|++|+ +..+++.++|.+|+|+ ++||++|++|+|.||+ +| |++.+. |.. ...+...
T Consensus 24 i~~a~a~lI~~AkRPvIl~Gg-v~~~~A~~eL~~~ae~-~iPVvtT~~g~g~~~~~~~~p~~~~~--G~~--~~g~~~~~ 97 (174)
T 1ytl_A 24 KGKPVANMIKKAKRPLLIVGP-DMTDEMFERVKKFVEK-DITVVATGSAITRFIDAGLGEKVNYA--VLH--ELTQFLLD 97 (174)
T ss_dssp CHHHHHHHHHHCSSEEEEECS-CCCHHHHHHHHHHHTS-SSEEEEETTHHHHHHHTTCGGGSEEE--CHH--HHHHHHHS
T ss_pred HHHHHHHHHHcCCCCEEEECC-CCCccHHHHHHHHHHc-CCCEEEcccccCcCCCCCCCcccccc--ccH--HHHHHhhh
Confidence 5788 9999999999999999 9888999999999999 9999999999999999 99 843332 111 2344444
Q ss_pred ---------hhcCEEEEeCCCcC--CcccccccccCCCCceEEEc
Q 007800 301 ---------ESADAYVFVGPIFN--DYSSVGYSLLIKKEKAIIVQ 334 (589)
Q Consensus 301 ---------~~aD~vl~lG~~~~--~~~~~~~~~~~~~~~~i~id 334 (589)
++||+||++|++|+ ++.+..|..+.++.++||||
T Consensus 98 ~~~~~~~~~~~aDLvI~iG~rf~~~~~~t~~~~~fap~akii~Id 142 (174)
T 1ytl_A 98 PDWKGFDGQGNYDLVLMLGSIYYHGSQMLAAIKNFAPHIRALAID 142 (174)
T ss_dssp TTCCCTTSSCCCSEEEEESCCHHHHHHHHHHHHHHCTTCEEEECS
T ss_pred hhhhhhcccCCCCEEEEECCcCCccccccccccccCCCCeEEEeC
Confidence 89999999999997 44444566666678899986
No 33
>3uk1_A Transketolase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, thiamine pyrophosphate; 2.15A {Burkholderia thailandensis} PDB: 3upt_A*
Probab=99.58 E-value=3.6e-15 Score=165.66 Aligned_cols=117 Identities=18% Similarity=0.218 Sum_probs=99.3
Q ss_pred CccchhhHHHHHHHHhhhcC--------------CCcEEEEEcchhhc--ccHHHHHHHHHhCCCeEEEEEeCCchhhhh
Q 007800 437 QYGSIGWSVGATLGYAQAAK--------------DKRVIACIGDGSFQ--VTAQEISTMIRCGQRSIIFLINNGGYTIEV 500 (589)
Q Consensus 437 ~~g~mG~~l~~aiGaala~~--------------~~~vv~i~GDGsf~--~~~~el~ta~~~~l~v~ivv~nN~~~~~~~ 500 (589)
..|+||+++|+|+|+++|.+ +++|+|++|||+|+ ++.++|.+|.++++|.+|+|+||++|++..
T Consensus 153 ~tG~lG~gl~~AvG~AlA~~~~~~~~n~~~~~~~d~~vv~i~GDG~l~eG~~~Eal~~A~~~~L~~livI~dnN~~~i~~ 232 (711)
T 3uk1_A 153 TTGPLGQGLANAVGMALGEALLAAEFNRDDAKIVDHHTYVFLGDGCLMEGISHEACSLAGTLKLNKLIALYDDNGISIDG 232 (711)
T ss_dssp CCCSTTHHHHHHHHHHHHHHHHHHHHCBTTBCCCCCCEEEEECHHHHHSHHHHHHHHHHHHTTCTTEEEEEEECSEETTE
T ss_pred CccchhhHHHHHHHHHHHHHhhcccccccccccCCCeEEEEECCcchhhccHHHHHHHHHHhCCCcEEEEEECCCccccc
Confidence 46899999999999999976 78999999999999 578999999999999999999999998821
Q ss_pred hhcCCCCCCCCCCChHHHHHHccCCCCCccEEE-eC--CHHHHHHHHHHhhhcCCCCeEEEEEEcCCC
Q 007800 501 EIHDGPYNVIKNWDYTGLVNAIHNGEGKCWTAK-VR--SEDELTEAMKTATGEQKDSLCFIEVFVHKD 565 (589)
Q Consensus 501 ~~~~~~~~~~~~~d~~~la~a~G~~~~~~~~~~-v~--~~~~l~~al~~a~~~~~~gp~viev~~~~~ 565 (589)
.... ....||.+++++||+ ++.+ |+ |.++|.++|+++.+ .++|+||+++|.+.
T Consensus 233 ~~~~-----~~~~d~~~~~~a~G~-----~~~~~vdG~d~~~l~~Al~~A~~--~~~P~lI~v~T~kG 288 (711)
T 3uk1_A 233 DVVN-----WFHDDTPKRFEAYGW-----NVIPNVNGHDVDAIDAAIAKAKR--SDKPSLICCKTRIG 288 (711)
T ss_dssp EGGG-----TCCCCHHHHHHHTTC-----EEEEEEETTCHHHHHHHHHHHTT--CSSCEEEEEEC---
T ss_pred chhh-----hcCCCHHHHHHHcCC-----cEEEEeCCCCHHHHHHHHHHHHh--CCCCEEEEEccccc
Confidence 1111 135799999999999 8888 64 99999999999986 78999999999753
No 34
>3kom_A Transketolase; rossmann fold, csgid, transferase, structural genomics, center for structural genomics of infectious DISE; HET: MSE; 1.60A {Francisella tularensis subsp}
Probab=99.56 E-value=8e-15 Score=162.22 Aligned_cols=118 Identities=17% Similarity=0.179 Sum_probs=97.9
Q ss_pred cCccchhhHHHHHHHHhhhcC--------------CCcEEEEEcchhhc--ccHHHHHHHHHhCCCeEEEEEeCCchhhh
Q 007800 436 MQYGSIGWSVGATLGYAQAAK--------------DKRVIACIGDGSFQ--VTAQEISTMIRCGQRSIIFLINNGGYTIE 499 (589)
Q Consensus 436 ~~~g~mG~~l~~aiGaala~~--------------~~~vv~i~GDGsf~--~~~~el~ta~~~~l~v~ivv~nN~~~~~~ 499 (589)
...|+||+++|+|+|+++|.+ +++|+|++|||+++ ++.++|.+|.++++|.+++|+||++|++.
T Consensus 113 ~~tG~lG~gl~~AvG~AlA~~~~~~~~~~~~~~~~d~~v~~i~GDG~l~eG~~~Eal~~A~~~~L~~livi~dnN~~~i~ 192 (663)
T 3kom_A 113 TTTGPLGQGVANAVGMALGEKLLSDRYNTPDLKVIDHHTYVFLGDGCLMEGVSHEACSLAGTLGLNKLVAFWDDNNISID 192 (663)
T ss_dssp SCCCSTTHHHHHHHHHHHHHHHHHHHHCBTTBCSCCCCEEEEECHHHHHSHHHHHHHHHHHHHTCTTEEEEEEECC----
T ss_pred cCCcchhhHHHHHHHHHHhHHhhcccccccccccCCCeEEEEECchhhhhchHHHHHHHHHHhCCCeEEEEEECCCcccc
Confidence 356899999999999999976 78999999999998 57899999999999999999999999883
Q ss_pred hhhcCCCCCCCCCCChHHHHHHccCCCCCccEE-EeC--CHHHHHHHHHHhhhcCCCCeEEEEEEcCC
Q 007800 500 VEIHDGPYNVIKNWDYTGLVNAIHNGEGKCWTA-KVR--SEDELTEAMKTATGEQKDSLCFIEVFVHK 564 (589)
Q Consensus 500 ~~~~~~~~~~~~~~d~~~la~a~G~~~~~~~~~-~v~--~~~~l~~al~~a~~~~~~gp~viev~~~~ 564 (589)
... ......|+.+++++||+ ++. .|+ |.++|.++|+++.+ ..++|+||+++|.+
T Consensus 193 ~~~-----~~~~~~d~~~~~~a~G~-----~~~~~vdG~d~~~l~~al~~A~~-~~~~P~lI~~~T~k 249 (663)
T 3kom_A 193 GDT-----KGWFSDNTPERFRAYGW-----HVIENVDGHDFVAIEKAINEAHS-QQQKPTLICCKTVI 249 (663)
T ss_dssp -CG-----GGTCCCCHHHHHHHTTC-----EEEEEEETTCHHHHHHHHHHHHH-CSSSCEEEEEECCT
T ss_pred cch-----hhhcchhHHHHHHHCCC-----eEEEEEcCCCHHHHHHHHHHHHh-cCCCCEEEEEeccc
Confidence 211 11235799999999999 888 786 89999999999974 24899999999974
No 35
>3m49_A Transketolase; alpha-beta-alpha sandwich, csgid, transferase, structural genomics, center for structural genomics of infectious diseases; HET: MSE TDP PG5 TRS BTB; 2.00A {Bacillus anthracis} PDB: 3hyl_A*
Probab=99.55 E-value=1.4e-14 Score=160.69 Aligned_cols=118 Identities=19% Similarity=0.251 Sum_probs=101.4
Q ss_pred CccchhhHHHHHHHHhhhcC--------------CCcEEEEEcchhhc--ccHHHHHHHHHhCCCeEEEEEeCCchhhhh
Q 007800 437 QYGSIGWSVGATLGYAQAAK--------------DKRVIACIGDGSFQ--VTAQEISTMIRCGQRSIIFLINNGGYTIEV 500 (589)
Q Consensus 437 ~~g~mG~~l~~aiGaala~~--------------~~~vv~i~GDGsf~--~~~~el~ta~~~~l~v~ivv~nN~~~~~~~ 500 (589)
..|+||+++|+|+|+++|.+ +++|+|++|||+++ ++.++|.+|.++++|.+++|+||++|++..
T Consensus 138 ~tG~lG~gl~~AvG~AlA~~~~~~~~n~~~~~~~d~~v~~i~GDG~l~eG~~~Eal~~A~~~~L~~livI~dnN~~~i~~ 217 (690)
T 3m49_A 138 TTGPLGQGIATAVGMAMAERHLAAKYNRDAYNIVDHYTYAICGDGDLMEGVSAEASSLAAHLQLGRLVVLYDSNDISLDG 217 (690)
T ss_dssp CCCSTTHHHHHHHHHHHHHHHHHHHHCBTTBCCSCCCEEEEECHHHHHSHHHHHHHHHHHHTTCTTEEEEEEECSBCSSS
T ss_pred CCccccccHHHHHHHHHHHHHhhccccccccccCCCeEEEEECchhhhhccHHHHHHHHHHhCCCeEEEEEECCCeeccc
Confidence 56899999999999999976 78999999999998 478999999999999999999999999822
Q ss_pred hhcCCCCCCCCCCChHHHHHHccCCCCCccEEEe---CCHHHHHHHHHHhhhcCCCCeEEEEEEcCCC
Q 007800 501 EIHDGPYNVIKNWDYTGLVNAIHNGEGKCWTAKV---RSEDELTEAMKTATGEQKDSLCFIEVFVHKD 565 (589)
Q Consensus 501 ~~~~~~~~~~~~~d~~~la~a~G~~~~~~~~~~v---~~~~~l~~al~~a~~~~~~gp~viev~~~~~ 565 (589)
.. ......|+.+++++||+ ++.+| +|.++|.++|+++.+ ..++|+||+++|.+.
T Consensus 218 ~~-----~~~~~~d~~~~~~a~G~-----~~~~v~DG~d~~~l~~Al~~a~~-~~~~P~lI~v~T~kG 274 (690)
T 3m49_A 218 DL-----NRSFSESVEDRYKAYGW-----QVIRVEDGNDIEAIAKAIEEAKA-DEKRPTLIEVRTTIG 274 (690)
T ss_dssp BG-----GGTCCCCHHHHHHHHTC-----EEEEESCTTCHHHHHHHHHHHHH-CCSSCEEEEEECCTT
T ss_pred ch-----hhccchhHHHHHHHcCC-----cEEEEecCCCHHHHHHHHHHHHh-cCCCCEEEEEEeecc
Confidence 11 11235799999999999 99999 699999999999974 358999999998743
No 36
>2e6k_A Transketolase; structural genomics, NPPSFA, national project protein structural and functional analyses; 2.09A {Thermus thermophilus}
Probab=99.54 E-value=1.1e-14 Score=161.96 Aligned_cols=117 Identities=20% Similarity=0.194 Sum_probs=101.4
Q ss_pred cCccchhhHHHHHHHHhhhcC--------------CCcEEEEEcchhhc--ccHHHHHHHHHhCCCeEEEEEeCCchhhh
Q 007800 436 MQYGSIGWSVGATLGYAQAAK--------------DKRVIACIGDGSFQ--VTAQEISTMIRCGQRSIIFLINNGGYTIE 499 (589)
Q Consensus 436 ~~~g~mG~~l~~aiGaala~~--------------~~~vv~i~GDGsf~--~~~~el~ta~~~~l~v~ivv~nN~~~~~~ 499 (589)
...|+||+++|+|+|+++|.+ +++|+|++|||+++ ++..+|.+|.++++|.+++|+||++|++.
T Consensus 115 ~~~G~lG~gl~~AvG~A~A~~~~~~~~~~~~~~~~~~~v~~~~GDG~~~eG~~~Eal~~A~~~~L~~li~i~~nN~~~i~ 194 (651)
T 2e6k_A 115 VTTGPLGQGISTAVGLALAERKLAAEFNRPGHVVVDHYTYVLASDGDLMEGVSGEAASLAGHWGLSKLIVFWDDNRISID 194 (651)
T ss_dssp SCCCSTTHHHHHHHHHHHHHHHHHHHHCBTTBCCCCCCEEEEECHHHHHSHHHHHHHHHHHHTTCTTEEEEEEECCEETT
T ss_pred eccccccchHHHHHHHHHHHHhhcccccccccCCCCCEEEEEEChhhhchhHHHHHHHHHHHcCCCeEEEEEECCCcccc
Confidence 457999999999999999963 78999999999999 57899999999999999999999999983
Q ss_pred hhhcCCCCCCCCCCChHHHHHHccCCCCCccEE-EeC--CHHHHHHHHHHhhhcCCCCeEEEEEEcCC
Q 007800 500 VEIHDGPYNVIKNWDYTGLVNAIHNGEGKCWTA-KVR--SEDELTEAMKTATGEQKDSLCFIEVFVHK 564 (589)
Q Consensus 500 ~~~~~~~~~~~~~~d~~~la~a~G~~~~~~~~~-~v~--~~~~l~~al~~a~~~~~~gp~viev~~~~ 564 (589)
..... . ...|+.+++++||+ ++. +|+ |.++|.++++++.+ .++|+|||++|.+
T Consensus 195 ~~~~~----~-~~~d~~~~~~a~G~-----~~~~~vdG~d~~~l~~al~~a~~--~~~P~lI~~~t~k 250 (651)
T 2e6k_A 195 GPTDL----A-FTEDVLARYRAYGW-----QTLRVEDVNDLEALRKAIKLAKL--DERPTLIAVRSHI 250 (651)
T ss_dssp EEGGG----T-CCSCHHHHHHHTTC-----EEEEESCTTCHHHHHHHHHHHHH--SSSCEEEEEECCT
T ss_pred ccccc----c-cCccHHHHHHhCCC-----eEEEEeCCCCHHHHHHHHHHHHH--CCCCEEEEEEeEe
Confidence 21111 1 25699999999999 888 887 99999999999986 7899999999985
No 37
>2ozl_A PDHE1-A type I, pyruvate dehydrogenase E1 component alpha subunit, somatic form; pyruvate_dehydrogenase_complex, human, multienzyme_complex_component; HET: TPP; 1.90A {Homo sapiens} SCOP: c.36.1.11 PDB: 1ni4_A* 3exe_A* 3exi_A 3exh_A* 3exg_A 3exf_A*
Probab=99.54 E-value=1.9e-14 Score=148.12 Aligned_cols=117 Identities=19% Similarity=0.159 Sum_probs=93.7
Q ss_pred cCccchhhHHHHHHHHhhhcC----CCcEEEEEcchhhccc--HHHHHHHHHhCCCeEEEEEeCCchhhhhhhcCCCCCC
Q 007800 436 MQYGSIGWSVGATLGYAQAAK----DKRVIACIGDGSFQVT--AQEISTMIRCGQRSIIFLINNGGYTIEVEIHDGPYNV 509 (589)
Q Consensus 436 ~~~g~mG~~l~~aiGaala~~----~~~vv~i~GDGsf~~~--~~el~ta~~~~l~v~ivv~nN~~~~~~~~~~~~~~~~ 509 (589)
.+.|+||+++|.|+|+++|.+ ++.|||++|||++.+. ..+|.+++.+++|+++||.|| +|++.... . ..
T Consensus 137 ~~~g~~G~~lp~A~G~A~A~~~~~~~~~vv~~~GDGa~~~G~~~Ealn~A~~~~lpvi~vv~NN-~~g~~t~~-~---~~ 211 (365)
T 2ozl_A 137 GGNGIVGAQVPLGAGIALACKYNGKDEVCLTLYGDGAANQGQIFEAYNMAALWKLPCIFICENN-RYGMGTSV-E---RA 211 (365)
T ss_dssp CCCCSTTTHHHHHHHHHHHHHHHTCCCCEEEEEETTGGGCHHHHHHHHHHHHTTCCEEEEEEEC-SEETTEEH-H---HH
T ss_pred CCcchhhhhhHHHHHHHHHHHhcCCCceEEEEECchhhhccHHHHHHHHHHHHCcCEEEEEECC-CcccCCCc-c---cc
Confidence 456899999999999999975 7899999999999985 567999999999988777666 68872100 0 00
Q ss_pred CCCCChHHHHHHccCCCCCccEEEeC--CHHHHHHHHHHhhh--cCCCCeEEEEEEcCC
Q 007800 510 IKNWDYTGLVNAIHNGEGKCWTAKVR--SEDELTEAMKTATG--EQKDSLCFIEVFVHK 564 (589)
Q Consensus 510 ~~~~d~~~la~a~G~~~~~~~~~~v~--~~~~l~~al~~a~~--~~~~gp~viev~~~~ 564 (589)
....||.+ +++|+ ++++|+ |++++.+++++|++ .+.+||+|||+.|.+
T Consensus 212 ~~~~~~~~--ra~g~-----p~~~VdG~D~~av~~a~~~A~~~~r~~~gP~lIe~~t~R 263 (365)
T 2ozl_A 212 AASTDYYK--RGDFI-----PGLRVDGMDILCVREATRFAAAYCRSGKGPILMELQTYR 263 (365)
T ss_dssp CSCCCGGG--TTTTS-----CEEEEETTCHHHHHHHHHHHHHHHHTTCCCEEEEEECCC
T ss_pred cCCCCHHH--HhCCC-----CEEEEeCCCHHHHHHHHHHHHHHHHhCCCCEEEEEEeec
Confidence 13457766 78998 899998 89999999998875 357899999999963
No 38
>2o1s_A 1-deoxy-D-xylulose-5-phosphate synthase; DXS, thiamine, isoprenoid, transferase; HET: TDP; 2.40A {Escherichia coli}
Probab=99.53 E-value=4.4e-14 Score=156.68 Aligned_cols=166 Identities=17% Similarity=0.220 Sum_probs=110.2
Q ss_pred cCHHHHHHHHHhhCC-CCCEEEecCCccccccc--------c--cc-------ccCCC-eeEeccCccchhhHHHHHHHH
Q 007800 391 LRVNVLFKHIQDMLS-GDTAVIAETGDSWFNCQ--------K--LR-------LPENC-GYEFQMQYGSIGWSVGATLGY 451 (589)
Q Consensus 391 i~~~~~~~~L~~~l~-~~~iiv~d~G~~~~~~~--------~--~~-------~~~~~-~~~~~~~~g~mG~~l~~aiGa 451 (589)
+....+...|...+. +++.++.|.|-..+... . ++ +|+.. .-......|+||+++|+|+|+
T Consensus 54 lg~~~~~~~l~~~~~~~~D~~v~~~gH~~y~~~~l~G~~~~~~~~r~~~g~~g~~~~~~s~~~~~~~G~~G~gl~~A~G~ 133 (621)
T 2o1s_A 54 LGTVELTVALHYVYNTPFDQLIWDVGHQAYPHKILTGRRDKIGTIRQKGGLHPFPWRGESEYDVLSVGHSSTSISAGIGI 133 (621)
T ss_dssp HTTHHHHHHHHHHSCTTTSEEEESSSTTCHHHHHTTTTGGGGGGTTSTTSCCSSCCTTTCTTCCSCCSSSSCHHHHHHHH
T ss_pred hhHHHHHHHHHhccCCCCCEEEEeCchHHHHHHHHhCCHhhhhcccccCCCCCCCCCCCCCCCccCCcccchHHHHHHHH
Confidence 455666667766676 67888888763211100 0 11 11110 001223579999999999999
Q ss_pred hhhc----CCCcEEEEEcchhhc--ccHHHHHHHHHhCCCeEEEEEeCCchhhhhhhcC-----------CCCCC-----
Q 007800 452 AQAA----KDKRVIACIGDGSFQ--VTAQEISTMIRCGQRSIIFLINNGGYTIEVEIHD-----------GPYNV----- 509 (589)
Q Consensus 452 ala~----~~~~vv~i~GDGsf~--~~~~el~ta~~~~l~v~ivv~nN~~~~~~~~~~~-----------~~~~~----- 509 (589)
++|. ++++|||++|||+|. |..++|.+|+++++|+++ |+||++|++...... ..|..
T Consensus 134 AlA~~~~~~~~~Vv~v~GDG~~~~G~~~EaL~~A~~~~~pli~-vvnnN~~~i~~~~~~~~~~~~~~~~~~~y~~~~~~~ 212 (621)
T 2o1s_A 134 AVAAEKEGKNRRTVCVIGDGAITAGMAFEAMNHAGDIRPDMLV-ILNDNEMSISENVGALNNHLAQLLSGKLYSSLREGG 212 (621)
T ss_dssp HHHHHHHTSCCCEEEEEETTGGGSHHHHHHHHHHHHHCCSEEE-EEEECC------------------------------
T ss_pred HHHHHHhCCCCeEEEEEchhhhhccHHHHHHHHHHhhCCCEEE-EEeCCCcccCCCcchHHHHHHhhhcchhHHHHHHHH
Confidence 9995 689999999999999 567899999999999865 567778987211100 01110
Q ss_pred --C-C-----------CCCh-------HHHHHHccCCCCCccEE-Ee--CCHHHHHHHHHHhhhcCCCCeEEEEEEcCC
Q 007800 510 --I-K-----------NWDY-------TGLVNAIHNGEGKCWTA-KV--RSEDELTEAMKTATGEQKDSLCFIEVFVHK 564 (589)
Q Consensus 510 --~-~-----------~~d~-------~~la~a~G~~~~~~~~~-~v--~~~~~l~~al~~a~~~~~~gp~viev~~~~ 564 (589)
+ . ..|| .+++++||+ ++. .| ++.++|.++++++.+ .++|+||||.|.+
T Consensus 213 ~~~~~~~p~~~~~~~r~~~~~~~~~~p~~~~ea~G~-----~~~g~vdG~d~~~l~~al~~A~~--~~gP~lI~v~t~k 284 (621)
T 2o1s_A 213 KKVFSGVPPIKELLKRTEEHIKGMVVPGTLFEELGF-----NYIGPVDGHDVLGLITTLKNMRD--LKGPQFLHIMTKK 284 (621)
T ss_dssp --------------------------CHHHHHHTTC-----EEEEEEETTCHHHHHHHHHHHHH--SCSEEEEEEECCC
T ss_pred HHHHhccchHHHHHHHHHHHhhhccChhhHHHHCCC-----eEeeeeCCCCHHHHHHHHHHHHH--cCCCEEEEEEEec
Confidence 0 0 0133 689999999 887 77 499999999999987 7899999999975
No 39
>2r8o_A Transketolase 1, TK 1; reaction intermediate, calcium, metal-binding, thiamine pyrophosphate, transferase; HET: T5X; 1.47A {Escherichia coli K12} SCOP: c.36.1.6 c.36.1.10 c.48.1.1 PDB: 2r5n_A* 2r8p_A* 1qgd_A*
Probab=99.53 E-value=1.7e-14 Score=160.79 Aligned_cols=120 Identities=17% Similarity=0.196 Sum_probs=102.0
Q ss_pred ccCccchhhHHHHHHHHhhhcC--------------CCcEEEEEcchhhc--ccHHHHHHHHHhCCCeEEEEEeCCchhh
Q 007800 435 QMQYGSIGWSVGATLGYAQAAK--------------DKRVIACIGDGSFQ--VTAQEISTMIRCGQRSIIFLINNGGYTI 498 (589)
Q Consensus 435 ~~~~g~mG~~l~~aiGaala~~--------------~~~vv~i~GDGsf~--~~~~el~ta~~~~l~v~ivv~nN~~~~~ 498 (589)
....|+||+++|+|+|+++|.+ +++|+|++|||+++ ++..+|.+|.++++|.+++|+||++|++
T Consensus 110 ~~~~G~lG~gl~~AvG~AlA~~~~~~~~n~~~~~~~~~~v~~~~GDG~~~eG~~~Eal~~A~~~~L~~li~i~~nN~~~i 189 (669)
T 2r8o_A 110 ETTTGPLGQGIANAVGMAIAEKTLAAQFNRPGHDIVDHYTYAFMGDGCMMEGISHEVCSLAGTLKLGKLIAFYDDNGISI 189 (669)
T ss_dssp CSCCCSTTHHHHHHHHHHHHHHHHHHHHCBTTBCCCCCCEEEEECHHHHHSHHHHHHHHHHHHTTCTTEEEEEEECSEET
T ss_pred ccccccccchHHHHHHHHHHHHHhccccccCccCCcCCeEEEEECHhHhcchHHHHHHHHHHHcCCCcEEEEEECCCcEe
Confidence 3567999999999999999975 78999999999999 5789999999999999999999999998
Q ss_pred hhhhcCCCCCCCCCCChHHHHHHccCCCCCccEE-EeC--CHHHHHHHHHHhhhcCCCCeEEEEEEcCCC
Q 007800 499 EVEIHDGPYNVIKNWDYTGLVNAIHNGEGKCWTA-KVR--SEDELTEAMKTATGEQKDSLCFIEVFVHKD 565 (589)
Q Consensus 499 ~~~~~~~~~~~~~~~d~~~la~a~G~~~~~~~~~-~v~--~~~~l~~al~~a~~~~~~gp~viev~~~~~ 565 (589)
...... . ...|+.+++++||+ ++. +|+ |+++|.++++++.+ ..++|+||+++|.+.
T Consensus 190 ~~~~~~----~-~~~d~~~~~~a~G~-----~~~~~vdG~d~~~l~~al~~a~~-~~~~P~lI~~~T~kg 248 (669)
T 2r8o_A 190 DGHVEG----W-FTDDTAMRFEAYGW-----HVIRDIDGHDAASIKRAVEEARA-VTDKPSLLMCKTIIG 248 (669)
T ss_dssp TEEGGG----T-CCCCHHHHHHHTTC-----EEEEEEETTCHHHHHHHHHHHHH-CCSSCEEEEEECCTT
T ss_pred cccccc----c-cCccHHHHHHHCCC-----eEEeEECCCCHHHHHHHHHHHHh-cCCCCEEEEEEeEec
Confidence 321111 1 24699999999999 888 887 99999999999984 358999999999863
No 40
>3mos_A Transketolase, TK; thiamin diphosphate TPP THDP enzyme catalysis sugar metaboli transferase; HET: TPP; 1.75A {Homo sapiens} PDB: 3ooy_A*
Probab=99.53 E-value=1.2e-14 Score=160.32 Aligned_cols=116 Identities=21% Similarity=0.170 Sum_probs=98.1
Q ss_pred cCccchhhHHHHHHHHhhhcC-----CCcEEEEEcchhhc--ccHHHHHHHHHhCCCeEEEEEeCCchhhhhhhcCCCCC
Q 007800 436 MQYGSIGWSVGATLGYAQAAK-----DKRVIACIGDGSFQ--VTAQEISTMIRCGQRSIIFLINNGGYTIEVEIHDGPYN 508 (589)
Q Consensus 436 ~~~g~mG~~l~~aiGaala~~-----~~~vv~i~GDGsf~--~~~~el~ta~~~~l~v~ivv~nN~~~~~~~~~~~~~~~ 508 (589)
...|+||+++|+|+|+++|.+ +++|+|++|||+++ |+.++|.++.++++|.+++|+||++|++... ...
T Consensus 118 ~~~G~lG~gl~~A~G~AlA~~~~~~~~~~vv~v~GDG~~~eG~~~Eal~~A~~~~l~~livi~nnN~~~i~~~----~~~ 193 (616)
T 3mos_A 118 VATGSLGQGLGAACGMAYTGKYFDKASYRVYCLLGDGELSEGSVWEAMAFASIYKLDNLVAILDINRLGQSDP----APL 193 (616)
T ss_dssp SCCCSTTCHHHHHHHHHHHHHHTSCCSCCEEEEEETGGGGSHHHHHHHHHHHHTTCTTEEEEEEECSBCSSSB----CTT
T ss_pred ccccccCCccHHHHHHHHHHHHhCCCCCEEEEEECccccccCcHHHHHHHHHHcCCCcEEEEEECCCCCCcCC----ccc
Confidence 357899999999999999976 68999999999999 7899999999999999999999999988211 111
Q ss_pred CCCCCChHHHHHHccCCCCCccEEEeC--CHHHHHHHHHHhhhcCCCCeEEEEEEcCC
Q 007800 509 VIKNWDYTGLVNAIHNGEGKCWTAKVR--SEDELTEAMKTATGEQKDSLCFIEVFVHK 564 (589)
Q Consensus 509 ~~~~~d~~~la~a~G~~~~~~~~~~v~--~~~~l~~al~~a~~~~~~gp~viev~~~~ 564 (589)
.....||.+++++||+ ++.+|+ |.++|.++|+++ .++|+|||++|.+
T Consensus 194 ~~~~~~~~~~~~a~G~-----~~~~VdG~d~~~l~~al~~~----~~~P~lI~v~T~k 242 (616)
T 3mos_A 194 QHQMDIYQKRCEAFGW-----HAIIVDGHSVEELCKAFGQA----KHQPTAIIAKTFK 242 (616)
T ss_dssp TTCHHHHHHHHHHTTC-----EEEEEETTCHHHHHHHHHSC----CSSCEEEEEECCT
T ss_pred ccChHHHHHHHHHcCC-----eEEEEcCCCHHHHHHHHHhc----CCCCEEEEEEEec
Confidence 1234589999999999 888995 899999999654 5799999999975
No 41
>1itz_A Transketolase; calvin cycle, cofactor, thiamine pyrophosphate, plant, transferase; HET: TPP; 2.30A {Zea mays} SCOP: c.36.1.6 c.36.1.10 c.48.1.1
Probab=99.53 E-value=2.3e-14 Score=159.78 Aligned_cols=118 Identities=19% Similarity=0.231 Sum_probs=101.5
Q ss_pred cCccchhhHHHHHHHHhhhc--------------CCCcEEEEEcchhhc--ccHHHHHHHHHhCCCeEEEEEeCCchhhh
Q 007800 436 MQYGSIGWSVGATLGYAQAA--------------KDKRVIACIGDGSFQ--VTAQEISTMIRCGQRSIIFLINNGGYTIE 499 (589)
Q Consensus 436 ~~~g~mG~~l~~aiGaala~--------------~~~~vv~i~GDGsf~--~~~~el~ta~~~~l~v~ivv~nN~~~~~~ 499 (589)
...|+||+++|+|+|+++|. ++++|+|++|||+++ |+.++|.+|.+++++.+++|+||++|++.
T Consensus 124 ~~~G~lG~gl~~AvG~AlA~~~~~~~~n~~~~~~~~~~v~~i~GDG~~~eG~~~Eal~~A~~~~L~~li~i~~nN~~~i~ 203 (675)
T 1itz_A 124 VTTGPLGQGIANAVGLALAEKHLAARFNKPDSEIVDHYTYVILGDGCQMEGIANEACSLAGHWGLGKLIAFYDDNHISID 203 (675)
T ss_dssp SCCCSTTHHHHHHHHHHHHHHHHHHHHCBTTBCCCCCCEEEEECHHHHHSHHHHHHHHHHHHTTCTTEEEEEEECSEETT
T ss_pred ECCccHHhHHHHHHHHHHHhhhhcccccccccCCCCCEEEEEECHhHhchhHHHHHHHHHHHhCCCcEEEEEECCCccCC
Confidence 45789999999999999996 588999999999999 68999999999999889999999999982
Q ss_pred hhhcCCCCCCCCCCChHHHHHHccCCCCCccEE-EeC---CHHHHHHHHHHhhhcCCCCeEEEEEEcCC
Q 007800 500 VEIHDGPYNVIKNWDYTGLVNAIHNGEGKCWTA-KVR---SEDELTEAMKTATGEQKDSLCFIEVFVHK 564 (589)
Q Consensus 500 ~~~~~~~~~~~~~~d~~~la~a~G~~~~~~~~~-~v~---~~~~l~~al~~a~~~~~~gp~viev~~~~ 564 (589)
..... . ...|+.+++++||+ ++. .|+ |.++|.++++++.+ ..++|+||+++|.+
T Consensus 204 ~~~~~----~-~~~d~~~~~~a~G~-----~~~~~vdG~~d~~~l~~al~~a~~-~~~~P~lI~~~T~k 261 (675)
T 1itz_A 204 GDTEI----A-FTEDVSTRFEALGW-----HTIWVKNGNTGYDDIRAAIKEAKA-VTDKPTLIKVTTTI 261 (675)
T ss_dssp EEGGG----T-CCSCHHHHHHHTTC-----EEEEESCTTTCHHHHHHHHHHHHH-CCSSCEEEEEECCT
T ss_pred CChhh----h-cChhHHHHHHhCCC-----EEEEEecCCCCHHHHHHHHHHHHH-CCCCeEEEEEeeec
Confidence 21111 1 26799999999999 888 887 99999999999984 35899999999976
No 42
>1gpu_A Transketolase; transferase(ketone residues); HET: THD; 1.86A {Saccharomyces cerevisiae} SCOP: c.36.1.6 c.36.1.10 c.48.1.1 PDB: 1ngs_A* 1trk_A* 1ay0_A* 1tkb_A* 1tka_A* 1tkc_A*
Probab=99.53 E-value=1.9e-14 Score=160.45 Aligned_cols=118 Identities=18% Similarity=0.174 Sum_probs=101.3
Q ss_pred cCccchhhHHHHHHHHhhhcC--------------CCcEEEEEcchhhc--ccHHHHHHHHHhCCCeEEEEEeCCchhhh
Q 007800 436 MQYGSIGWSVGATLGYAQAAK--------------DKRVIACIGDGSFQ--VTAQEISTMIRCGQRSIIFLINNGGYTIE 499 (589)
Q Consensus 436 ~~~g~mG~~l~~aiGaala~~--------------~~~vv~i~GDGsf~--~~~~el~ta~~~~l~v~ivv~nN~~~~~~ 499 (589)
...|+||+++|.|+|+++|.+ +++|+|++|||+++ ++..+|.+|.++++|.+++|+||++|++.
T Consensus 113 ~~~G~lG~gl~~AvG~AlA~~~~~~~~n~~~~~~~~~~vv~i~GDG~~~eG~~~Eal~~A~~~~L~~li~i~~nN~~~i~ 192 (680)
T 1gpu_A 113 VTTGPLGQGISNAVGMAMAQANLAATYNKPGFTLSDNYTYVFLGDGCLQEGISSEASSLAGHLKLGNLIAIYDDNKITID 192 (680)
T ss_dssp SCCCSTTHHHHHHHHHHHHHHHHHHHHCBTTBCCCCCCEEEEECHHHHHSHHHHHHHHHHHHTTCTTEEEEEEECSEETT
T ss_pred eccccccchHHHHHHHHHHHHHhccccccCccCCCCCeEEEEECCCccchhhHHHHHHHHHHhCCCcEEEEEECCCceEe
Confidence 456899999999999999965 78999999999999 67899999999999999999999999983
Q ss_pred hhhcCCCCCCCCCCChHHHHHHccCCCCCccEE-EeC---CHHHHHHHHHHhhhcCCCCeEEEEEEcCC
Q 007800 500 VEIHDGPYNVIKNWDYTGLVNAIHNGEGKCWTA-KVR---SEDELTEAMKTATGEQKDSLCFIEVFVHK 564 (589)
Q Consensus 500 ~~~~~~~~~~~~~~d~~~la~a~G~~~~~~~~~-~v~---~~~~l~~al~~a~~~~~~gp~viev~~~~ 564 (589)
..... . ...|+.+++++||+ ++. +|+ |+++|.++++++.+ ..++|+|||++|.+
T Consensus 193 ~~~~~----~-~~~d~~~~~~a~G~-----~~~~~vdG~~d~~~l~~al~~A~~-~~~~P~lI~~~T~k 250 (680)
T 1gpu_A 193 GATSI----S-FDEDVAKRYEAYGW-----EVLYVENGNEDLAGIAKAIAQAKL-SKDKPTLIKMTTTI 250 (680)
T ss_dssp EEGGG----T-CCCCHHHHHHHHTC-----EEEEESCTTTCHHHHHHHHHHHHH-CTTSCEEEEEECCT
T ss_pred ccccc----c-cCccHHHHHHhcCC-----eEEEEecCCCCHHHHHHHHHHHHH-CCCCCEEEEEEeec
Confidence 21111 1 25799999999999 888 888 99999999999984 35899999999975
No 43
>1r9j_A Transketolase; domains, EACH of the alpha/beta type, thiamine diphosphate binding domain, transferase; HET: TPP; 2.22A {Leishmania mexicana mexicana} SCOP: c.36.1.6 c.36.1.10 c.48.1.1
Probab=99.47 E-value=1.4e-13 Score=153.20 Aligned_cols=118 Identities=15% Similarity=0.137 Sum_probs=99.8
Q ss_pred cCccchhhHHHHHHHHhhhcC--------------CCcEEEEEcchhhccc--HHHHHHHHHhCCCeEEEEEeCCchhhh
Q 007800 436 MQYGSIGWSVGATLGYAQAAK--------------DKRVIACIGDGSFQVT--AQEISTMIRCGQRSIIFLINNGGYTIE 499 (589)
Q Consensus 436 ~~~g~mG~~l~~aiGaala~~--------------~~~vv~i~GDGsf~~~--~~el~ta~~~~l~v~ivv~nN~~~~~~ 499 (589)
...|+||+++|.|+|+|+|.+ +++|+|++|||++++. ..++.+|.++++|.+++|+||++|++.
T Consensus 113 ~~tG~lG~gl~~AvG~AlA~~~~~~~~n~~g~~~~d~~v~~~~GDG~~~eG~~~Eal~~A~~~~L~~li~i~d~N~~~i~ 192 (673)
T 1r9j_A 113 VTTGPLGQGIANAVGLAIAEAHLAATFNRPGYNIVDHYTYVYCGDGCLMEGVCQEALSLAGHLALEKLIVIYDSNYISID 192 (673)
T ss_dssp SCCCSTTHHHHHHHHHHHHHHHHHHHHCBTTBCCCCCCEEEEECHHHHHSHHHHHHHHHHHHHTCTTEEEEEEECSBCSS
T ss_pred eccCCCCCcHHHHHHHHHHHHHhhhhccccccCCCCCEEEEEECcchhcccHHHHHHHHHHHhCCCcEEEEEECCCCccc
Confidence 457999999999999999964 7899999999999964 788999999999999999999999882
Q ss_pred hhhcCCCCCCCCCCChHHHHHHccCCCCCccEE-Ee---CCHHHHHHHHHHhhhcCCCCeEEEEEEcCC
Q 007800 500 VEIHDGPYNVIKNWDYTGLVNAIHNGEGKCWTA-KV---RSEDELTEAMKTATGEQKDSLCFIEVFVHK 564 (589)
Q Consensus 500 ~~~~~~~~~~~~~~d~~~la~a~G~~~~~~~~~-~v---~~~~~l~~al~~a~~~~~~gp~viev~~~~ 564 (589)
... ......|+.+++++||+ ++. .| +|+++|.++++++.+ ..++|++|+++|.+
T Consensus 193 ~~~-----~~~~~~d~~~~~~a~G~-----~~~~~vdG~~d~~~l~~Al~~A~~-~~~~P~lI~~~T~k 250 (673)
T 1r9j_A 193 GST-----SLSFTEQCHQKYVAMGF-----HVIEVKNGDTDYEGLRKALAEAKA-TKGKPKMIVQTTTI 250 (673)
T ss_dssp SBG-----GGTCCCCHHHHHHHTTC-----EEEEESCTTTCHHHHHHHHHHHHH-CCSSCEEEEEECCT
T ss_pred cch-----hhccCHhHHHHHHHCCC-----eEEEEeCCCCCHHHHHHHHHHHHH-cCCCCEEEEEeccc
Confidence 111 11125699999999999 888 77 789999999999974 36899999999975
No 44
>3rim_A Transketolase, TK; TPP, transferase; HET: TPP; 2.49A {Mycobacterium tuberculosis}
Probab=99.26 E-value=1.6e-11 Score=136.02 Aligned_cols=118 Identities=19% Similarity=0.215 Sum_probs=97.2
Q ss_pred cCccchhhHHHHHHHHhhhcC-----------------CCcEEEEEcchhhccc--HHHHHHHHHhCCCeEEEEEeCCch
Q 007800 436 MQYGSIGWSVGATLGYAQAAK-----------------DKRVIACIGDGSFQVT--AQEISTMIRCGQRSIIFLINNGGY 496 (589)
Q Consensus 436 ~~~g~mG~~l~~aiGaala~~-----------------~~~vv~i~GDGsf~~~--~~el~ta~~~~l~v~ivv~nN~~~ 496 (589)
...|++|.++|.|+|+|+|.+ +++|+|++|||+++.. ...+.+|.++++|-+|+|+||++|
T Consensus 130 ~~tG~lG~gl~~AvG~AlA~k~~~~~~~~~~~~~~~~~~~~v~~~~GDG~l~eG~~~EAl~~A~~~~L~nli~i~d~N~~ 209 (700)
T 3rim_A 130 ITTGPLGQGLASAVGMAMASRYERGLFDPDAEPGASPFDHYIYVIASDGDIEEGVTSEASSLAAVQQLGNLIVFYDRNQI 209 (700)
T ss_dssp SCCCSTTHHHHHHHHHHHHHHHHHHHHCTTSCTTCSTTCCCEEEEEEHHHHHSHHHHHHHHHHHHTTCTTEEEEEEECSE
T ss_pred ccccccCCcchHHHHHHHHHHHHhhhccccccccccCCCCeEEEEECCcccccChHHHHHHHHHHcCCCcEEEEEECCCc
Confidence 346899999999999999843 5789999999999974 678899999999878888888889
Q ss_pred hhhhhhcCCCCCCCCCCChHHHHHHccCCCCCccEEEe-C--CHHHHHHHHHHhhhcCCCCeEEEEEEcCC
Q 007800 497 TIEVEIHDGPYNVIKNWDYTGLVNAIHNGEGKCWTAKV-R--SEDELTEAMKTATGEQKDSLCFIEVFVHK 564 (589)
Q Consensus 497 ~~~~~~~~~~~~~~~~~d~~~la~a~G~~~~~~~~~~v-~--~~~~l~~al~~a~~~~~~gp~viev~~~~ 564 (589)
++.... ......|+.+.+++||+ ++.+| + |.++|.++++++.+ ..++|+||+++|.+
T Consensus 210 si~~~~-----~~~~~~~~~~~~~a~G~-----~~~~V~DG~D~~al~~Al~~A~~-~~~~P~lI~~~T~k 269 (700)
T 3rim_A 210 SIEDDT-----NIALCEDTAARYRAYGW-----HVQEVEGGENVVGIEEAIANAQA-VTDRPSFIALRTVI 269 (700)
T ss_dssp ETTEEG-----GGTCCCCHHHHHHHHTC-----EEEEEECTTCHHHHHHHHHHHHH-CCSSCEEEEEECCT
T ss_pred ccccch-----hhccchhHHHHHHHcCC-----eEEEECCCCCHHHHHHHHHHHHH-cCCCCEEEEEEEEe
Confidence 882111 01135699999999999 89999 3 99999999999974 46899999999974
No 45
>2yic_A 2-oxoglutarate decarboxylase; lyase; HET: TPP; 1.96A {Mycobacterium smegmatis} PDB: 2xta_A* 2y0p_A* 2xt9_A* 2yid_A*
Probab=99.06 E-value=1.1e-10 Score=132.26 Aligned_cols=122 Identities=15% Similarity=0.126 Sum_probs=95.4
Q ss_pred EeccCccchhhHHHHHHHHhhhcC--------------CCcEEEEEcchhh--cccHHH-HHHHHHhCCC---eEEEEEe
Q 007800 433 EFQMQYGSIGWSVGATLGYAQAAK--------------DKRVIACIGDGSF--QVTAQE-ISTMIRCGQR---SIIFLIN 492 (589)
Q Consensus 433 ~~~~~~g~mG~~l~~aiGaala~~--------------~~~vv~i~GDGsf--~~~~~e-l~ta~~~~l~---v~ivv~n 492 (589)
......+.||.++|.|+|+++|.+ +..++|++|||+| ...+.| |.+|..+++| +++||.|
T Consensus 239 ~l~~n~s~Lg~~~P~A~G~A~A~k~~~~~~~~~~~~~~~~~vv~~~GDGa~~~eG~v~Ealn~A~~~~lp~g~vi~iv~N 318 (868)
T 2yic_A 239 SLTANPSHLEAVDPVLEGLVRAKQDLLDTGEEGSDNRFSVVPLMLHGDAAFAGQGVVAETLNLALLRGYRTGGTIHIVVN 318 (868)
T ss_dssp EECCCCSSTTTTHHHHHHHHHHHHHHHTCSTTSSSCSCCEEEEEEEEHHHHHHCHHHHHHHTTTTCTTTCCSCCEEEEEE
T ss_pred eecCCCccccccccHHHHHHHHHHhhccCCcccccccCCceEEEEECCcccccccHHHHHHHHHHhcCCCCCCeEEEEEc
Confidence 334556889999999999999853 2479999999998 467888 8888889998 9999998
Q ss_pred CCchhhhhhhcCCCCCCCCCCChHHHHHHccCCCCCccEEEeC--CHHHHHHHHHHhhh--cCCCCeEEEEEEcCC
Q 007800 493 NGGYTIEVEIHDGPYNVIKNWDYTGLVNAIHNGEGKCWTAKVR--SEDELTEAMKTATG--EQKDSLCFIEVFVHK 564 (589)
Q Consensus 493 N~~~~~~~~~~~~~~~~~~~~d~~~la~a~G~~~~~~~~~~v~--~~~~l~~al~~a~~--~~~~gp~viev~~~~ 564 (589)
| +|++........ ...++.++|++||+ ++++|+ |++++..++++|++ ++.++|+|||+.|.+
T Consensus 319 N-~~g~st~~~~~~----s~~~~~~~a~a~G~-----p~~~VdG~D~~av~~a~~~A~~~ar~~~~PvlIe~~tyR 384 (868)
T 2yic_A 319 N-QIGFTTAPTDSR----SSEYCTDVAKMIGA-----PIFHVNGDDPEACAWVARLAVDFRQAFKKDVVIDMLCYR 384 (868)
T ss_dssp C-SCBTTBCHHHHC----SSSSTTGGGGGGTC-----CEEEEETTCHHHHHHHHHHHHHHHHHHCCCEEEEEECCC
T ss_pred C-CcccccCccccc----cccCHHHHHHhCCC-----cEEEEeCCCHHHHHHHHHHHHHHHHhCCCCEEEEEEeec
Confidence 8 788721110000 23456788999999 899997 79999999999875 236899999999975
No 46
>2xt6_A 2-oxoglutarate decarboxylase; lyase, KDH, KGD; HET: TPP; 2.74A {Mycobacterium smegmatis}
Probab=98.94 E-value=6.7e-10 Score=128.90 Aligned_cols=120 Identities=15% Similarity=0.122 Sum_probs=93.2
Q ss_pred ccCccchhhHHHHHHHHhhhcC--------------CCcEEEEEcchhh--cccHHH-HHHHHHhCCC---eEEEEEeCC
Q 007800 435 QMQYGSIGWSVGATLGYAQAAK--------------DKRVIACIGDGSF--QVTAQE-ISTMIRCGQR---SIIFLINNG 494 (589)
Q Consensus 435 ~~~~g~mG~~l~~aiGaala~~--------------~~~vv~i~GDGsf--~~~~~e-l~ta~~~~l~---v~ivv~nN~ 494 (589)
....+.||.++|.|+|+++|.+ +..++|++|||+| ...+.| |.+|..+++| +++||.||
T Consensus 486 ~~n~s~Lg~~~p~A~G~A~A~k~~~~~~~~~~~~~~~~~~v~~~GDGa~~~eG~~~Ealn~A~~~~lp~g~vi~iv~NN- 564 (1113)
T 2xt6_A 486 TANPSHLEAVDPVLEGLVRAKQDLLDTGEEGSDNRFSVVPLMLHGDAAFAGQGVVAETLNLALLRGYRTGGTIHIVVNN- 564 (1113)
T ss_dssp CCCCSSTTTTHHHHHHHHHHHHHHTTBSTTSSBSCCCEEEEEEEEHHHHHHCTHHHHHHTTTTCTTTCCSCCEEEEEEC-
T ss_pred cCCCccccccccHHHHHHHHHHHhccccCccccccCCcEEEEEECCcccccccHHHHHHHHHhhcCCCCCCeEEEEEeC-
Confidence 3456789999999999999853 3569999999998 567888 7778889998 88888888
Q ss_pred chhhhhhhcCCCCCCCCCCChHHHHHHccCCCCCccEEEeC--CHHHHHHHHHHhhh--cCCCCeEEEEEEcCC
Q 007800 495 GYTIEVEIHDGPYNVIKNWDYTGLVNAIHNGEGKCWTAKVR--SEDELTEAMKTATG--EQKDSLCFIEVFVHK 564 (589)
Q Consensus 495 ~~~~~~~~~~~~~~~~~~~d~~~la~a~G~~~~~~~~~~v~--~~~~l~~al~~a~~--~~~~gp~viev~~~~ 564 (589)
+|++........ ...++.++|++||+ ++++|+ |++++..++++|.+ +..++|+|||+.|.+
T Consensus 565 ~~gist~~~~~~----s~~~~~~~a~a~G~-----p~~~VdG~D~~av~~a~~~A~~~~r~~~~PvlIe~~tyR 629 (1113)
T 2xt6_A 565 QIGFTTAPTDSR----SSEYCTDVAKMIGA-----PIFHVNGDDPEACAWVARLAVDFRQAFKKDVVIDMLCYR 629 (1113)
T ss_dssp SCBTTBCHHHHC----SSSSTTGGGGGGTC-----CEEEEETTCHHHHHHHHHHHHHHHHHHCCCEEEEEECCC
T ss_pred CcccccCccccc----cccCHHHHHHhcCC-----cEEEEcCCCHHHHHHHHHHHHHHHHhcCCCEEEEEEeEc
Confidence 688721100000 12345678999999 899998 99999999998875 336899999999974
No 47
>2jgd_A 2-oxoglutarate dehydrogenase E1 component; flavoprotein, oxidoreductase, thiamine diphosphate, thiamine pyrophosphate, adenosine monophosphate; HET: AMP; 2.6A {Escherichia coli} PDB: 2jgd_B*
Probab=98.87 E-value=2e-09 Score=122.55 Aligned_cols=119 Identities=16% Similarity=0.147 Sum_probs=87.7
Q ss_pred cCccchhhHHHHHHHHhhhcCCC---------cEEEEEcchhh--cccHHH-HHHHHHhCCC---eEEEEEeCCchhhhh
Q 007800 436 MQYGSIGWSVGATLGYAQAAKDK---------RVIACIGDGSF--QVTAQE-ISTMIRCGQR---SIIFLINNGGYTIEV 500 (589)
Q Consensus 436 ~~~g~mG~~l~~aiGaala~~~~---------~vv~i~GDGsf--~~~~~e-l~ta~~~~l~---v~ivv~nN~~~~~~~ 500 (589)
...+.+|.++|.|+|+++|.+.+ .+||++|||+| .....| |.++..+++| +++||.||+ |++..
T Consensus 318 ~~~shlg~~~p~A~G~A~A~~~~~~~~~~~~~~vv~v~GDGa~a~qG~~~Ealn~A~~~~lp~gg~I~vv~nN~-~~ist 396 (933)
T 2jgd_A 318 FNPSHLEIVSPVVIGSVRARLDRLDEPSSNKVLPITIHGDAAVTGQGVVQETLNMSKARGYEVGGTVRIVINNQ-VGFTT 396 (933)
T ss_dssp CCCSSTTCHHHHHHHHHHHHHTTSSSCCGGGEEEEEEEEHHHHHHCTHHHHHHHHTTSTTTCCSCCEEEEEECC------
T ss_pred ccCcccccccCHHHHHHHHHHhhccccCCCCeEEEEEECCcccccCCHHHHHHHHhhccCCCCCceEEEEEeCC-ccccC
Confidence 45577899999999999996543 69999999998 556777 7778889999 888888777 87732
Q ss_pred -hhcCCCCCCCCCCChHHHHHHccCCCCCccEEEeC--CHHHHHHHHHHhhh--cCCCCeEEEEEEcCC
Q 007800 501 -EIHDGPYNVIKNWDYTGLVNAIHNGEGKCWTAKVR--SEDELTEAMKTATG--EQKDSLCFIEVFVHK 564 (589)
Q Consensus 501 -~~~~~~~~~~~~~d~~~la~a~G~~~~~~~~~~v~--~~~~l~~al~~a~~--~~~~gp~viev~~~~ 564 (589)
.... .....++.+++++||+ ++++|+ |++++..+++++.+ +..++|+|||+.+.+
T Consensus 397 ~~~~~----~~~~~~~~~~a~a~g~-----p~~~VdG~D~~av~~a~~~A~e~~r~~~~P~lIe~~tyR 456 (933)
T 2jgd_A 397 SNPLD----ARSTPYCTDIGKMVQA-----PIFHVNADDPEAVAFVTRLALDFRNTFKRDVFIDLVCYR 456 (933)
T ss_dssp --------------CGGGGGGTTTC-----CEEEEETTCHHHHHHHHHHHHHHHHHHCCCEEEEEECCC
T ss_pred CCHHh----cccchhHHHHHHHcCC-----CEEEECCCCHHHHHHHHHHHHHHHHhcCCCEEEEEeeee
Confidence 1110 1123468888999999 888886 68899999998875 235789999999975
No 48
>2qtc_A Pyruvate dehydrogenase E1 component; thiamin diphosphate, glycolysis, MAG metal-binding, oxidoreductase, thiamine pyrophosphate; HET: TDK; 1.77A {Escherichia coli} SCOP: c.36.1.6 c.36.1.10 c.48.1.1 PDB: 2qta_A* 1l8a_A* 1rp7_A* 2g25_A* 2g28_A* 2g67_A 2iea_A* 3lpl_A* 3lq2_A* 3lq4_A*
Probab=98.87 E-value=4.2e-09 Score=119.50 Aligned_cols=118 Identities=21% Similarity=0.217 Sum_probs=94.3
Q ss_pred cCccchhhHHHHHHHHhhhc-----------CCCcEEEEEcchhhc--ccHHHHHHHHHhCCCeEEEEEeCCchhhhhhh
Q 007800 436 MQYGSIGWSVGATLGYAQAA-----------KDKRVIACIGDGSFQ--VTAQEISTMIRCGQRSIIFLINNGGYTIEVEI 502 (589)
Q Consensus 436 ~~~g~mG~~l~~aiGaala~-----------~~~~vv~i~GDGsf~--~~~~el~ta~~~~l~v~ivv~nN~~~~~~~~~ 502 (589)
...|+||.+++.|+|+++++ ++++|+|++|||++. ++...|.+|.+++++-+|+|+||+.+.+
T Consensus 189 ~~tG~~G~g~s~AiG~A~a~~~l~~~~~~~~~~~~v~aviGDG~l~eG~~~EAl~~A~~~~L~nli~Vvn~N~~si---- 264 (886)
T 2qtc_A 189 FPTVSMGLGPIGAIYQAKFLKYLEHRGLKDTSKQTVYAFLGDGEMDEPESKGAITIATREKLDNLVFVINCNLQRL---- 264 (886)
T ss_dssp CCCCSTTHHHHHHHHHHHHHHHHHHTTSCCCTTCCEEEEEETGGGGSHHHHTTHHHHHHTTCTTEEEEEEECSBCS----
T ss_pred ccccccCccHHHHHHHHHHhhhhcccccccCCCCEEEEEECCccccccchHHHHHHHHHcCCCcEEEEEECCCccc----
Confidence 34689999999999999974 468999999999998 4788999999999987888888888877
Q ss_pred cCCCCC--CCCCCChHHHHHHccCCCCCccEEEeC---------------------------------------------
Q 007800 503 HDGPYN--VIKNWDYTGLVNAIHNGEGKCWTAKVR--------------------------------------------- 535 (589)
Q Consensus 503 ~~~~~~--~~~~~d~~~la~a~G~~~~~~~~~~v~--------------------------------------------- 535 (589)
+++-. ....-++.++.+++|+ +..+|.
T Consensus 265 -~~~v~~~~~~~~~l~~~~~~~G~-----~~~~v~~g~~~~~ll~~~~~~~l~~~~~~~~d~~~q~~~~~~g~~~r~~~F 338 (886)
T 2qtc_A 265 -DGPVTGNGKIINELEGIFEGAGW-----NVIKVMWGSRWDELLRKDTSGKLIQLMNETVDGDYQTFKSKDGAYVREHFF 338 (886)
T ss_dssp -SSBSCTTSCHHHHHHHHHHHTTC-----EEEEECBCTTHHHHHHHCSSCHHHHHHHHCCHHHHHHHTTSCHHHHHHHTS
T ss_pred -CCCccccccccHHHHHHHHhCCC-----CEEEEecchhHHHHHccCCchHHHHHHHhccchhhhhhhhccchHHHHhhc
Confidence 22111 1112368899999998 777772
Q ss_pred --------------------------CHHHHHHHHHHhhhcCCCCeEEEEEEcCC
Q 007800 536 --------------------------SEDELTEAMKTATGEQKDSLCFIEVFVHK 564 (589)
Q Consensus 536 --------------------------~~~~l~~al~~a~~~~~~gp~viev~~~~ 564 (589)
|.++|.++++++.+ ..++|+||+++|.+
T Consensus 339 ~~~~~~~~l~~~~~d~~i~~l~~dGhD~~~l~~a~~~A~~-~~~~PtlI~~~T~K 392 (886)
T 2qtc_A 339 GKYPETAALVADWTDEQIWALNRGGHDPKKIYAAFKKAQE-TKGKATVILAHTIK 392 (886)
T ss_dssp TTSHHHHTTTTTCCHHHHHTCCBGGGCHHHHHHHHHHHHH-CCSSCEEEEEECCT
T ss_pred ccchHHHHHHhhcChhhHhhcccCCCCHHHHHHHHHHHHH-cCCCCEEEEEeeee
Confidence 78899999999885 23699999999975
No 49
>2c42_A Pyruvate-ferredoxin oxidoreductase; 4Fe-4S, iron, iron-sulfur, iron-sulfur cluster, pyruvate catabolism, TPP-dependent enzyme; HET: TPP; 1.78A {Desulfovibrio africanus} SCOP: c.36.1.8 c.36.1.12 c.48.1.3 c.64.1.1 d.58.1.5 PDB: 1b0p_A* 1kek_A* 2c3o_A* 2c3p_A* 2c3u_A* 2c3y_A* 2c3m_A* 2pda_A* 2uza_A*
Probab=98.38 E-value=3.6e-06 Score=99.18 Aligned_cols=156 Identities=14% Similarity=0.033 Sum_probs=119.2
Q ss_pred cccHHHHHHHHHHHcCCCEEEecCCcchHHHHHhhhc-----CCC-----CeEEecCchhHHHHhhhhhhhccCceEEEE
Q 007800 26 VGTLGRHLARRLVEIGAKDVFSVPGDFNLTLLDHLIA-----EPE-----LNLVGCCNELNAGYAADGYARSRGVGACVV 95 (589)
Q Consensus 26 ~~~~a~~i~~~L~~~GV~~vfg~pG~~~~~l~~al~~-----~~~-----i~~v~~~hE~~A~~~A~gyar~tg~~v~~~ 95 (589)
.++|++++++.. ..|++.++++|+++.+++.+.+.+ .++ ..+++..+|.+|+.||.|.+.+..|.++ .
T Consensus 6 ~~~GNeAvA~~a-~ag~~~~~~YPITPstei~e~l~~~~~~g~~~~~G~~~~v~~~esE~aA~~aaiGAa~aGaR~~t-~ 83 (1231)
T 2c42_A 6 TTDGNTATAHVA-YAMSEVAAIYPITPSSTMGEEADDWAAQGRKNIFGQTLTIREMQSEAGAAGAVHGALAAGALTTT-F 83 (1231)
T ss_dssp EEEHHHHHHHHH-HHHCSEEEECCCTTTHHHHHHHHHHHHHTCCCTTSCCCEEEECSSHHHHHHHHHHHHHTTCCEEE-E
T ss_pred EccHHHHHHHHH-HHCCCEEEEECCCCchHHHHHHHHHHHcCCchhcCCceEEEecCChHHHHHHHHHHHHcCChHhh-h
Confidence 589999999997 889999999999999999998842 223 4999999999999999997766445544 4
Q ss_pred eCCcchHHHHHHHHHhhhcCCcEEEEeCCCCccccCCccceeeecCCCChHHHHHhhhcceeE-EEEeCChhhHHHHHHH
Q 007800 96 TFTVGGLSVLNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCFQAITCS-QAVVNNLGDAHELIDT 174 (589)
Q Consensus 96 t~GpG~~n~~~~l~~A~~~~~PllvI~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tk~-~~~v~~~~~~~~~l~~ 174 (589)
|++||+.-+...|..+...++|+|+...+++....+-. ..+.+ .| . ++.-.+.| .....+++++..++..
T Consensus 84 Ts~~Gl~lm~e~l~~~ag~~~P~Vi~va~R~g~~~gls-----i~~~h--sd-~-~~ar~~G~~vl~pss~QEa~dl~~~ 154 (1231)
T 2c42_A 84 TASQGLLLMIPNMYKISGELLPGVFHVTARAIAAHALS-----IFGDH--QD-I-YAARQTGFAMLASSSVQEAHDMALV 154 (1231)
T ss_dssp ECHHHHHHHHHHHHHHHHTTCCCEEEEEECCCCSSSBC-----CSCCS--HH-H-HTTTTSSCEEEECCSHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHhCCCCCEEEEECCCCccCCCCc-----CCCch--hh-H-HHHhcCCcEEEECCCHHHHHHHHHH
Confidence 89999999999998766679999999988775422111 11211 12 1 22222333 4456789999999999
Q ss_pred HHHHhHhcCCcEEEEeCC
Q 007800 175 AISTALKESKPVYISISC 192 (589)
Q Consensus 175 A~~~a~~~~gPV~i~iP~ 192 (589)
||++|...+-||.+....
T Consensus 155 Af~lAek~~~PVi~~~Dg 172 (1231)
T 2c42_A 155 AHLAAIESNVPFMHFFDG 172 (1231)
T ss_dssp HHHHHHHHCCCEEEEEET
T ss_pred HHHHHHHcCCCEEEEecC
Confidence 999999889999988765
No 50
>3ahc_A Phosphoketolase, xylulose 5-phosphate/fructose 6-phosphate phospho; thiamine diphosphate-dependent enzyme, alpha-beta fold; HET: TPP 2PE; 1.70A {Bifidobacterium breve} PDB: 3ahd_A* 3ahe_A* 3ahf_A* 3ahj_A* 3ahi_A* 3ahh_A* 3ahg_A* 3ai7_A*
Probab=97.92 E-value=8.1e-06 Score=91.17 Aligned_cols=119 Identities=13% Similarity=0.106 Sum_probs=85.1
Q ss_pred ccchhhHHHHHHHHhhhcCCCcEEEEEcchhhccc-HHHHHHHH----HhCCCeEEEEEeCCchhhhhhhcCCCCC--CC
Q 007800 438 YGSIGWSVGATLGYAQAAKDKRVIACIGDGSFQVT-AQEISTMI----RCGQRSIIFLINNGGYTIEVEIHDGPYN--VI 510 (589)
Q Consensus 438 ~g~mG~~l~~aiGaala~~~~~vv~i~GDGsf~~~-~~el~ta~----~~~l~v~ivv~nN~~~~~~~~~~~~~~~--~~ 510 (589)
.|++|+|++.|+|+++.+|+.+|+|++|||...-. +...|.+. .+++.-++.|+|++++.+ +++-. ..
T Consensus 174 tG~LGqGls~AvG~A~~~~~~~v~~~~GDGe~e~GsLAg~wea~~~~~~~~l~nl~~i~D~N~~~i-----~g~t~l~~~ 248 (845)
T 3ahc_A 174 GGELGYALSHAYGAVMNNPSLFVPCIIGDGEAETGPLATGWQSNKLVNPRTDGIVLPILHLNGYKI-----ANPTILARI 248 (845)
T ss_dssp CSSTTCHHHHHHHHHTTCTTCEEEEEEETTGGGSHHHHHHGGGGGSCCTTTSCEEEEEEEECSBSS-----SSBCHHHHS
T ss_pred CCCccchHhHHhhhhhcCCCCeEEEEECCCchhhhcchhhhHHhhhhhhhcCCCEEEEEECCCCcC-----CCCcccccc
Confidence 58999999999999999999999999999995442 22233222 367888889999998987 22110 11
Q ss_pred CCCChHHHHHHccCCCCCccEE-EeC-----CHHHHHHHHHHhh-------------hc--CCCCe--EEEEEEcCCCC
Q 007800 511 KNWDYTGLVNAIHNGEGKCWTA-KVR-----SEDELTEAMKTAT-------------GE--QKDSL--CFIEVFVHKDD 566 (589)
Q Consensus 511 ~~~d~~~la~a~G~~~~~~~~~-~v~-----~~~~l~~al~~a~-------------~~--~~~gp--~viev~~~~~~ 566 (589)
..-|+.+..++||+ +.. .|+ |++++.+++.+++ +. ..++| .+|-++|.+.-
T Consensus 249 ~~e~l~~rf~a~Gw-----~v~~~vdG~~~~D~~~i~~a~~~al~~~~~~i~~i~~~A~~~~~~kP~w~~Ii~rT~kG~ 322 (845)
T 3ahc_A 249 SDEELHDFFRGMGY-----HPYEFVAGFDNEDHMSIHRRFAELFETIFDEICDIKAAAQTDDMTRPFYPMLIFRTPKGW 322 (845)
T ss_dssp CHHHHHHHHHHTTE-----EEEEEECSSSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSSCCCEEEEEEECCTTT
T ss_pred CcHHHHHHHHHCCC-----EEeEEeCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCeEEEEECcccC
Confidence 23478999999999 766 664 6778877765433 11 13689 99999986543
No 51
>1umd_B E1-beta, 2-OXO acid dehydrogenase beta subunit; alpha(2)beta(2) tetramer, structural genomics; HET: TDP; 1.90A {Thermus thermophilus} SCOP: c.36.1.7 c.48.1.2 PDB: 1um9_B* 1umc_B* 1umb_B*
Probab=95.54 E-value=0.37 Score=48.26 Aligned_cols=115 Identities=17% Similarity=0.096 Sum_probs=77.1
Q ss_pred eEEec-CchhHHHHhhhhhhhccCceEEEEeCCcchHHHHHHHHH--hh---h----cCCcEEEEeCCCCccccCCccce
Q 007800 67 NLVGC-CNELNAGYAADGYARSRGVGACVVTFTVGGLSVLNAIAG--AY---S----ENLPVICIVGGPNSNDYGTNRIL 136 (589)
Q Consensus 67 ~~v~~-~hE~~A~~~A~gyar~tg~~v~~~t~GpG~~n~~~~l~~--A~---~----~~~PllvI~g~~~~~~~~~~~~~ 136 (589)
+++.+ ..|++++.+|.|+|...-+.++..|.++.+.-+...+.+ |+ . .++|++++.. +... +.+ .-
T Consensus 52 r~~~~gIaE~~~v~~a~G~A~~G~~p~~~~t~~~F~~~a~dqi~~~~a~~~~~~~g~~~~pvv~~~~-~g~~--~~~-g~ 127 (324)
T 1umd_B 52 RVMDTPLSEAAIVGAALGMAAHGLRPVAEIQFADYIFPGFDQLVSQVAKLRYRSGGQFTAPLVVRMP-SGGG--VRG-GH 127 (324)
T ss_dssp TEEECCSCHHHHHHHHHHHHHHTCEEEEECSSGGGCGGGHHHHHHTTTTHHHHTTTSSCCCCEEEEE-ECSS--SSC-GG
T ss_pred cEEECchhHHHHHHHHHHHHHCCCEEEEEeccHhHHHHHHHHHHHHHHHHHhhcCCCCcCCEEEEEc-CCCC--CCC-CC
Confidence 45554 999999999999998733366656788887767777754 32 1 6899988763 2111 111 23
Q ss_pred eeecCCCChHHHHHhhhccee-EEEEeCChhhHHHHHHHHHHHhHhcCCcEEEEeCCCCC
Q 007800 137 HHTIGLPDFTQELRCFQAITC-SQAVVNNLGDAHELIDTAISTALKESKPVYISISCNLP 195 (589)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~tk-~~~~v~~~~~~~~~l~~A~~~a~~~~gPV~i~iP~dv~ 195 (589)
||+. + + ..+++.+.. -...+.+++++..+++.|++ .++||+|..|..+.
T Consensus 128 ~hs~-~----~-~a~~~~iP~~~V~~P~d~~e~~~~l~~a~~----~~~Pv~i~~p~~l~ 177 (324)
T 1umd_B 128 HHSQ-S----P-EAHFVHTAGLKVVAVSTPYDAKGLLKAAIR----DEDPVVFLEPKRLY 177 (324)
T ss_dssp GSSC-C----C-HHHHHTSTTCEEEECCSHHHHHHHHHHHHH----CSSCEEEEEEGGGS
T ss_pred ccch-h----H-HHHHhcCCCCEEEEeCCHHHHHHHHHHHHh----cCCCEEEEechHhc
Confidence 3322 1 1 256666554 34466788899888888885 57999998887664
No 52
>1w85_B Pyruvate dehydrogenase E1 component, beta subunit; dehydrogenase, multienzyme complex, oxidoreductase; HET: TDP; 2.0A {Geobacillus stearothermophilus} SCOP: c.36.1.7 c.48.1.2 PDB: 1w88_B* 3dva_B* 3dv0_B* 3duf_B*
Probab=95.40 E-value=0.11 Score=52.22 Aligned_cols=115 Identities=18% Similarity=0.091 Sum_probs=77.7
Q ss_pred eEEec-CchhHHHHhhhhhhhccCc-eEEEEeCCcchHHHHHHHHH--hh---h----cCCcEEEEeCCCCccccCCccc
Q 007800 67 NLVGC-CNELNAGYAADGYARSRGV-GACVVTFTVGGLSVLNAIAG--AY---S----ENLPVICIVGGPNSNDYGTNRI 135 (589)
Q Consensus 67 ~~v~~-~hE~~A~~~A~gyar~tg~-~v~~~t~GpG~~n~~~~l~~--A~---~----~~~PllvI~g~~~~~~~~~~~~ 135 (589)
+++.+ ..|++++.+|.|+|.. |. .++..|.++.+.-+...+.+ |+ . .++|++++.. +... +.+ .
T Consensus 51 r~~~~gIaE~~~v~~a~G~A~~-G~rp~~~~t~~~F~~~a~dqi~~~~a~~~~~~~g~~~~pvv~~~~-~g~~--~~~-g 125 (324)
T 1w85_B 51 RVFDTPLAESGIGGLAIGLALQ-GFRPVPEIQFFGFVYEVMDSICGQMARIRYRTGGRYHMPITIRSP-FGGG--VHT-P 125 (324)
T ss_dssp TEEECCSCHHHHHHHHHHHHHT-TCEEEEBCSSGGGGGGTHHHHHTTGGGHHHHTTTSSCCCCEEEEE-ECSS--SCC-C
T ss_pred cEEEcchhHHHHHHHHHHHHhC-CCEEEEEecchhHHHHHHHHHHHHHHHHhhhccCCCcCCEEEEEe-ccCC--CCC-C
Confidence 56664 5999999999999987 55 66656788888767777754 22 2 7899988853 1111 111 1
Q ss_pred eeeecCCCChHHHHHhhhccee-EEEEeCChhhHHHHHHHHHHHhHhcCCcEEEEeCCCCCC
Q 007800 136 LHHTIGLPDFTQELRCFQAITC-SQAVVNNLGDAHELIDTAISTALKESKPVYISISCNLPG 196 (589)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~tk-~~~~v~~~~~~~~~l~~A~~~a~~~~gPV~i~iP~dv~~ 196 (589)
-||+. . + ..+++.+.. -...+.+++++..+++.|++ .++||+|..|..+..
T Consensus 126 ~~hs~-~----~-~a~~~~iP~l~V~~Psd~~e~~~~l~~a~~----~~~Pv~i~~p~~l~r 177 (324)
T 1w85_B 126 ELHSD-S----L-EGLVAQQPGLKVVIPSTPYDAKGLLISAIR----DNDPVIFLEHLKLYR 177 (324)
T ss_dssp TTSSC-C----C-HHHHTTSTTCEEECCSSHHHHHHHHHHHHH----SSSCEEEEEETTTSS
T ss_pred Ccccc-c----H-HHHHccCCCCEEEeeCCHHHHHHHHHHHHH----cCCCEEEEechHhcC
Confidence 22222 1 1 366777665 34466788899888888885 579999998887743
No 53
>2bfd_B 2-oxoisovalerate dehydrogenase beta subunit; oxidoreductase, multi-enzyme complex, acylation, oxidative decarboxylation, maple syrup urine disease; HET: TDP; 1.39A {Homo sapiens} SCOP: c.36.1.7 c.48.1.2 PDB: 1dtw_B* 1olu_B* 1ols_B* 1v11_B* 1v16_B* 1v1m_B* 1u5b_B* 1wci_B* 1v1r_B* 1x7x_B* 1x7w_B* 1x7z_B* 1x80_B* 2beu_B* 2bev_B* 2bew_B* 2bfb_B* 2bfc_B* 1x7y_B* 2bfe_B* ...
Probab=95.07 E-value=0.059 Score=54.59 Aligned_cols=169 Identities=13% Similarity=0.060 Sum_probs=99.6
Q ss_pred eEEecC-chhHHHHhhhhhhhccCceEEEEeCCcchHHHHHHHHH-h----hhc----CC-cEEEEeCCCCccccCCccc
Q 007800 67 NLVGCC-NELNAGYAADGYARSRGVGACVVTFTVGGLSVLNAIAG-A----YSE----NL-PVICIVGGPNSNDYGTNRI 135 (589)
Q Consensus 67 ~~v~~~-hE~~A~~~A~gyar~tg~~v~~~t~GpG~~n~~~~l~~-A----~~~----~~-PllvI~g~~~~~~~~~~~~ 135 (589)
+++.+- .|++++.+|.|+|....+.++..|.++++.-+...+.+ + +.. ++ ||+++...... ..+ .
T Consensus 68 r~~~~gIaE~~~v~~a~G~A~~G~rp~~~~tf~~F~~~a~dqi~~~~a~~~~~~~g~~~~~pvv~~~~~~g~---~~G-~ 143 (342)
T 2bfd_B 68 RVFNTPLCEQGIVGFGIGIAVTGATAIAEIQFADYIFPAFDQIVNEAAKYRYRSGDLFNCGSLTIRSPWGCV---GHG-A 143 (342)
T ss_dssp TEEECCSCHHHHHHHHHHHHHTTCCEEEECSSGGGCGGGHHHHHTTGGGHHHHTTTSSCCTTEEEEEEESCC---SSC-G
T ss_pred eEEEcCcCHHHHHHHHHHHHHCCCeeEEEecchhHHHHHHHHHHHHHHHHHhhhcCCccCCCEEEEEecCCC---CCC-c
Confidence 677775 99999999999999843466666899998777777753 3 211 33 99988543221 122 2
Q ss_pred eeeecCCCChHHHHHhhhccee-EEEEeCChhhHHHHHHHHHHHhHhcCCcEEEEeCCCCCCCCCCCCCCCCCCccCCCC
Q 007800 136 LHHTIGLPDFTQELRCFQAITC-SQAVVNNLGDAHELIDTAISTALKESKPVYISISCNLPGIPHPTFARDPVPFFLAPK 214 (589)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~tk-~~~~v~~~~~~~~~l~~A~~~a~~~~gPV~i~iP~dv~~~~~~~~~~~~~~~~~~~~ 214 (589)
.||.+. + ..+++.+-. ....+.+++++..+++.|++ .++||+|..|..+.....+............
T Consensus 144 th~~~~--d----~~~l~~iP~l~V~~Psd~~e~~~~l~~a~~----~~~Pv~i~~p~~l~r~~~~~~~~~~~~~~~G-- 211 (342)
T 2bfd_B 144 LYHSQS--P----EAFFAHCPGIKVVIPRSPFQAKGLLLSCIE----DKNPCIFFEPKILYRAAAEEVPIEPYNIPLS-- 211 (342)
T ss_dssp GGSSCC--C----HHHHHTSTTCEEECCSSHHHHHHHHHHHHH----SSSCEEEEEEGGGTTSCCEEEESSCCCCCSS--
T ss_pred chhhHh--H----HHHHhcCCCcEEEeeCCHHHHHHHHHHHHh----cCCcEEEEecchhcCCCCCCCCCcccceeCC--
Confidence 444332 1 455666544 34566788889888888876 3699999888665432111100000000000
Q ss_pred CCChhhHHHHHHHHHHHHHhcCCCEEEeCcccchhhHHHHHHHHHHHhCCc
Q 007800 215 VSNQLGLEAAVEATADFLNKAVKPVLVGGPNIRVAKAQKAFIELADATGYP 265 (589)
Q Consensus 215 ~~~~~~~~~~i~~~~~~L~~a~rpviv~G~g~~~~~~~~~l~~lae~~~~P 265 (589)
.. +.+.+ ..-++|++.|.-...+.++..+|.++.|+.
T Consensus 212 ~~-------------~v~~~-g~dv~iia~G~~~~~a~~Aa~~L~~~~Gi~ 248 (342)
T 2bfd_B 212 QA-------------EVIQE-GSDVTLVAWGTQVHVIREVASMAKEKLGVS 248 (342)
T ss_dssp CC-------------EEEEC-CSSEEEEECTTHHHHHHHHHHHHHHHHCCC
T ss_pred ce-------------EEecc-CCCEEEEEECHHHHHHHHHHHHHHhhcCCC
Confidence 00 00111 234666677776666777777787664653
No 54
>2ozl_B PDHE1-B, pyruvate dehydrogenase E1 component subunit beta; pyruvate_dehydrogenase_complex, human, multienzyme_complex_component; HET: TPP; 1.90A {Homo sapiens} SCOP: c.36.1.7 c.48.1.2 PDB: 1ni4_B* 3exe_B* 3exf_B* 3exg_B 3exh_B* 3exi_B
Probab=95.02 E-value=0.18 Score=50.91 Aligned_cols=115 Identities=14% Similarity=0.109 Sum_probs=78.9
Q ss_pred CeEEec-CchhHHHHhhhhhhhccCceEEEEeCCcchHHHHHHHHHhhh---------cCCcEEEEeCCCCccccCCccc
Q 007800 66 LNLVGC-CNELNAGYAADGYARSRGVGACVVTFTVGGLSVLNAIAGAYS---------ENLPVICIVGGPNSNDYGTNRI 135 (589)
Q Consensus 66 i~~v~~-~hE~~A~~~A~gyar~tg~~v~~~t~GpG~~n~~~~l~~A~~---------~~~PllvI~g~~~~~~~~~~~~ 135 (589)
-+++.+ ..|++++.+|.|+|...-+.++..+.+..+.-+...+..... .+.||+++... .. .+.+..
T Consensus 62 ~r~~d~gIaE~~~v~~a~G~A~~G~rp~~~~~f~~F~~~a~dqi~~~~a~~~y~~~g~~~~pvv~~~~~-G~--~g~~G~ 138 (341)
T 2ozl_B 62 KRIIDTPISEMGFAGIAVGAAMAGLRPICEFMTFNFSMQAIDQVINSAAKTYYMSGGLQPVPIVFRGPN-GA--SAGVAA 138 (341)
T ss_dssp TTEEECCSCHHHHHHHHHHHHHTTCEEEEECSSGGGGGGGHHHHHTTTTTHHHHTTSSCCCCCEEEEEC-SC--CSSCCG
T ss_pred CcEEECchhHHHHHHHHHHHHHCCCEEEEEeccHHHHHHHHHHHHHHHHHHHhhccccCCCCEEEEEcC-cC--CCCCCc
Confidence 377777 699999999999998743366666788888777788775332 78998888653 22 222212
Q ss_pred eeeecCCCChHHHHHhhhcceeE-EEEeCChhhHHHHHHHHHHHhHhcCCcEEEEeCCCC
Q 007800 136 LHHTIGLPDFTQELRCFQAITCS-QAVVNNLGDAHELIDTAISTALKESKPVYISISCNL 194 (589)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~tk~-~~~v~~~~~~~~~l~~A~~~a~~~~gPV~i~iP~dv 194 (589)
-| + + ..+ .+++.+..+ ...+.+++++..+++.|++ .++||+|..|..+
T Consensus 139 tH-s-~---~~e--a~l~~iP~l~V~~Psd~~e~~~~l~~a~~----~~~Pv~i~~~~~~ 187 (341)
T 2ozl_B 139 QH-S-Q---CFA--AWYGHCPGLKVVSPWNSEDAKGLIKSAIR----DNNPVVVLENELM 187 (341)
T ss_dssp GG-C-C---CCH--HHHHTSTTCEEECCCSHHHHHHHHHHHHH----SSSCEEEEECHHH
T ss_pred ch-h-h---HHH--HHhccCCCCEEEEeCCHHHHHHHHHHHHh----cCCCEEEEEChhh
Confidence 23 1 2 222 566666554 3456788888888888876 3699999999553
No 55
>1ybh_A Acetolactate synthase, chloroplast; acetohydroxyacid synthase, herbicide, sulfonylurea, thiamin diphosphate, FAD, inhibitor; HET: CIE NHE FAD P22; 2.50A {Arabidopsis thaliana} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1yhy_A* 1yhz_A* 1yi0_A* 1yi1_A* 1z8n_A* 3ea4_A* 3e9y_A*
Probab=94.57 E-value=0.22 Score=54.34 Aligned_cols=108 Identities=12% Similarity=0.067 Sum_probs=81.3
Q ss_pred hHHHHHHHHhhhcCCCcEEEEEcch-hhcccHHHHHHHHHhCCCeEEEEEeCCchhhhhhhcCCCCCCCCCCChHHHHHH
Q 007800 443 WSVGATLGYAQAAKDKRVIACIGDG-SFQVTAQEISTMIRCGQRSIIFLINNGGYTIEVEIHDGPYNVIKNWDYTGLVNA 521 (589)
Q Consensus 443 ~~l~~aiGaala~~~~~vv~i~GDG-sf~~~~~el~ta~~~~l~v~ivv~nN~~~~~~~~~~~~~~~~~~~~d~~~la~a 521 (589)
.+.-+|.|.+.+. +++.+|++-=| +..-....+.+|...++|+++|.-+-....+. .+. +...|...+.+.
T Consensus 61 ~Aa~~A~Gyar~t-g~p~v~~~TsGpG~~N~~~gv~~A~~~~vPll~itg~~~~~~~g----~~~---~Q~~d~~~~~~~ 132 (590)
T 1ybh_A 61 GGVFAAEGYARSS-GKPGICIATSGPGATNLVSGLADALLDSVPLVAITGQVPRRMIG----TDA---FQETPIVEVTRS 132 (590)
T ss_dssp HHHHHHHHHHHHH-SSCEEEEECTTHHHHTTHHHHHHHHHHTCCEEEEEEECCGGGTT----TTC---TTCCCHHHHHGG
T ss_pred HHHHHHHHHHHHH-CCCEEEEeccCchHHHHHHHHHHHHhhCCCEEEEeCcCCccccC----CCc---ccccCHHHHHHH
Confidence 4556788888874 67877777666 45556999999999999999998876644321 111 244699999999
Q ss_pred ccCCCCCccEEEeCCHHHHHHHHHHhhh--c-CCCCeEEEEEEcC
Q 007800 522 IHNGEGKCWTAKVRSEDELTEAMKTATG--E-QKDSLCFIEVFVH 563 (589)
Q Consensus 522 ~G~~~~~~~~~~v~~~~~l~~al~~a~~--~-~~~gp~viev~~~ 563 (589)
+-- +..++.+++++...+++|+. . ...||+.|++..|
T Consensus 133 ~~k-----~~~~v~~~~~i~~~l~~A~~~a~~~~~GPV~l~iP~d 172 (590)
T 1ybh_A 133 ITK-----HNYLVMDVEDIPRIIEEAFFLATSGRPGPVLVDVPKD 172 (590)
T ss_dssp GSS-----EEEECCCGGGHHHHHHHHHHHHHSSSCCEEEEEEEHH
T ss_pred HhC-----eEEecCCHHHHHHHHHHHHHHHhhCCCceEEEEeCcc
Confidence 876 78999999999988888886 1 2358999999875
No 56
>1ozh_A ALS, acetolactate synthase, catabolic; acetohydroxyacid synthase, thiamin diphosphate, lyase; HET: PGE HE3; 2.00A {Klebsiella pneumoniae} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1ozg_A* 1ozf_A*
Probab=94.41 E-value=0.24 Score=53.86 Aligned_cols=151 Identities=11% Similarity=0.059 Sum_probs=96.2
Q ss_pred HHHHHHHHhhCCCCCEEEecCCccccccc-cccccCCCeeEeccCccchhhHHHHHHHHhhhcCCCcEEEEEcch-hhcc
Q 007800 394 NVLFKHIQDMLSGDTAVIAETGDSWFNCQ-KLRLPENCGYEFQMQYGSIGWSVGATLGYAQAAKDKRVIACIGDG-SFQV 471 (589)
Q Consensus 394 ~~~~~~L~~~l~~~~iiv~d~G~~~~~~~-~~~~~~~~~~~~~~~~g~mG~~l~~aiGaala~~~~~vv~i~GDG-sf~~ 471 (589)
..+++.|.+. .=+.+ +.=-|....... .+.. ...+++....-. .+.-+|.|.+.+. +++.+|++-=| +..-
T Consensus 15 ~~l~~~L~~~-GV~~v-fg~PG~~~~~l~~al~~-~~i~~v~~~~E~---~Aa~~A~Gyar~t-g~p~v~~~TsGpG~~N 87 (566)
T 1ozh_A 15 DLVVSQLEAQ-GVRQV-FGIPGAKIDKVFDSLLD-SSIRIIPVRHEA---NAAFMAAAVGRIT-GKAGVALVTSGPGCSN 87 (566)
T ss_dssp HHHHHHHHHH-TCCEE-EEECCTTTHHHHHHGGG-SSSEEEECSSHH---HHHHHHHHHHHHH-SSCEEEEECSTHHHHT
T ss_pred HHHHHHHHHC-CCCEE-EEcCCCchHHHHHHHHh-CCCcEEEeCCHH---HHHHHHHHHHHHH-CCCEEEEEccChHHHH
Confidence 4456666654 22333 333444332211 1222 234565554433 4456678887764 67888877666 4555
Q ss_pred cHHHHHHHHHhCCCeEEEEEeCCchhhhhhhcCCCCCCCCCCChHHHHHHccCCCCCccEEEeCCHHHHHHHHHHhhh--
Q 007800 472 TAQEISTMIRCGQRSIIFLINNGGYTIEVEIHDGPYNVIKNWDYTGLVNAIHNGEGKCWTAKVRSEDELTEAMKTATG-- 549 (589)
Q Consensus 472 ~~~el~ta~~~~l~v~ivv~nN~~~~~~~~~~~~~~~~~~~~d~~~la~a~G~~~~~~~~~~v~~~~~l~~al~~a~~-- 549 (589)
....+.+|...++|+++|.-+-....... + .+...|...+.+.+-- +..++.+++++...+++|+.
T Consensus 88 ~~~~l~~A~~~~vPll~itg~~~~~~~~~----~---~~Q~~d~~~~~~~~tk-----~~~~v~~~~~~~~~i~~A~~~A 155 (566)
T 1ozh_A 88 LITGMATANSEGDPVVALGGAVKRADKAK----Q---VHQSMDTVAMFSPVTK-----YAIEVTAPDALAEVVSNAFRAA 155 (566)
T ss_dssp THHHHHHHHHHTCCEEEEEEECCTTTC-------------CCCHHHHHGGGCS-----EEEECCSGGGHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCEEEEeCCCccccCCC----C---cccccCHHHHHHHHhh-----eEEEcCCHHHHHHHHHHHHHHH
Confidence 68999999999999999988766543311 1 1234689999998876 78999999988777777764
Q ss_pred c-CCCCeEEEEEEcC
Q 007800 550 E-QKDSLCFIEVFVH 563 (589)
Q Consensus 550 ~-~~~gp~viev~~~ 563 (589)
. ...||+.|++..|
T Consensus 156 ~~~r~GPV~l~iP~d 170 (566)
T 1ozh_A 156 EQGRPGSAFVSLPQD 170 (566)
T ss_dssp HSSSCCEEEEEEEHH
T ss_pred hcCCCCeEEEEeChh
Confidence 2 2359999999987
No 57
>2uz1_A Benzaldehyde lyase; thiamine diphosphate, thiamine pyrophosphate, benzoin, flavoprotein; HET: TPP; 1.65A {Pseudomonas fluorescens} PDB: 2ag1_A* 2ag0_A* 2uz1_B* 3iae_A* 3iaf_A* 3d7k_A*
Probab=94.38 E-value=0.24 Score=53.79 Aligned_cols=118 Identities=14% Similarity=0.135 Sum_probs=85.0
Q ss_pred CeeEeccCccchhhHHHHHHHHhhhcCCCcEEEEEcch-hhcccHHHHHHHHHhCCCeEEEEEeCCchhhhhhhcCCCCC
Q 007800 430 CGYEFQMQYGSIGWSVGATLGYAQAAKDKRVIACIGDG-SFQVTAQEISTMIRCGQRSIIFLINNGGYTIEVEIHDGPYN 508 (589)
Q Consensus 430 ~~~~~~~~~g~mG~~l~~aiGaala~~~~~vv~i~GDG-sf~~~~~el~ta~~~~l~v~ivv~nN~~~~~~~~~~~~~~~ 508 (589)
.+++....-. .+.-+|.|.+.+. +++.+|++-=| +..-..+.+.+|...++|+++|.-+-...... .+.
T Consensus 42 i~~i~~~~E~---~Aa~~A~Gyar~t-g~p~v~~~TsGpG~~N~~~~l~~A~~~~~Pll~itg~~~~~~~~----~~~-- 111 (563)
T 2uz1_A 42 VPIIDTRHEA---AAGHAAEGYARAG-AKLGVALVTAGGGFTNAVTPIANAWLDRTPVLFLTGSGALRDDE----TNT-- 111 (563)
T ss_dssp CCEEECSSHH---HHHHHHHHHHHHH-TSCEEEEECTTHHHHTTHHHHHHHHHHTCCEEEEEEECCGGGTT----SCC--
T ss_pred CcEEeeCCHH---HHHHHHHHHHHHh-CCCEEEEEccCccHHHHHHHHHHHHhcCCCEEEEeCCCCcccCC----chh--
Confidence 3455544333 4556788888774 67888877665 45556899999999999999998876654331 111
Q ss_pred CCCC-CChHHHHHHccCCCCCccEEEeCCHHHHHHHHHHhhh---cCCCCeEEEEEEcC
Q 007800 509 VIKN-WDYTGLVNAIHNGEGKCWTAKVRSEDELTEAMKTATG---EQKDSLCFIEVFVH 563 (589)
Q Consensus 509 ~~~~-~d~~~la~a~G~~~~~~~~~~v~~~~~l~~al~~a~~---~~~~gp~viev~~~ 563 (589)
+.. +|...+.+.+-- +..++.+++++...+++|+. ....||+.|++..|
T Consensus 112 -~Q~~~d~~~~~~~~tk-----~~~~v~~~~~~~~~l~~A~~~a~~~~~GPV~l~iP~d 164 (563)
T 2uz1_A 112 -LQAGIDQVAMAAPITK-----WAHRVMATEHIPRLVMQAIRAALSAPRGPVLLDLPWD 164 (563)
T ss_dssp -TTCCCCHHHHHGGGCS-----EEEECCCGGGHHHHHHHHHHHHHSSSCCCEEEEEEHH
T ss_pred -hhhhccHHHHhhhhhc-----eEEEcCCHHHHHHHHHHHHHHhcCCCCceEEEEeCHH
Confidence 234 689999998876 78999999988877777765 23459999999988
No 58
>3mos_A Transketolase, TK; thiamin diphosphate TPP THDP enzyme catalysis sugar metaboli transferase; HET: TPP; 1.75A {Homo sapiens} PDB: 3ooy_A*
Probab=94.07 E-value=0.55 Score=51.36 Aligned_cols=152 Identities=14% Similarity=0.071 Sum_probs=92.2
Q ss_pred HHHHHHHHHHcCCCEEEecCCcchHHHHHhhhc-CCCCeEEe-cCchhHHHHhhhhhhhccCceEEEEeCCcchHHHHHH
Q 007800 30 GRHLARRLVEIGAKDVFSVPGDFNLTLLDHLIA-EPELNLVG-CCNELNAGYAADGYARSRGVGACVVTFTVGGLSVLNA 107 (589)
Q Consensus 30 a~~i~~~L~~~GV~~vfg~pG~~~~~l~~al~~-~~~i~~v~-~~hE~~A~~~A~gyar~tg~~v~~~t~GpG~~n~~~~ 107 (589)
+++|.+.+++ .=+.+.+-+.-.....++.+.+ .++ +++. ...|++++.+|.|+|....+-++..+.++.+.-+...
T Consensus 320 ~~~L~~l~~~-d~~vv~~~aD~~~~~~~~~~~~~~p~-R~~d~gIaE~~~v~~a~G~A~~G~~~~~~~~f~~Fl~~a~dq 397 (616)
T 3mos_A 320 GQALAKLGHA-SDRIIALDGDTKNSTFSEIFKKEHPD-RFIECYIAEQNMVSIAVGCATRNRTVPFCSTFAAFFTRAFDQ 397 (616)
T ss_dssp HHHHHHHHHH-CTTEEEEESSCHHHHSHHHHHHHCGG-GEEECCSCHHHHHHHHHHHHGGGCCEEEEEEEGGGGGGGHHH
T ss_pred HHHHHHHHhh-CCCEEEEeCCcCCCcchhhHHHhCCC-CeEEcCccHHHHHHHHHHHHHcCCCCEEEEehHHHHHHHHHH
Confidence 3344443333 3345555444333333444432 233 5555 4699999999999998865556666889999888999
Q ss_pred HHHhhhcCCcEEEEeCCCCccccCCccceeeecCCCChHHHHHhhhcceeEE-EEeCChhhHHHHHHHHHHHhHhcCCcE
Q 007800 108 IAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCFQAITCSQ-AVVNNLGDAHELIDTAISTALKESKPV 186 (589)
Q Consensus 108 l~~A~~~~~PllvI~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tk~~-~~v~~~~~~~~~l~~A~~~a~~~~gPV 186 (589)
|..+...+.|++++....... .+.+..-||.+ ....+++.+-... ..+.++.++..+++ .|...+||+
T Consensus 398 i~~~a~~~~~v~~v~~~~g~~-~G~dG~tH~~~------ed~a~l~~iP~l~V~~P~d~~e~~~~l~----~a~~~~gp~ 466 (616)
T 3mos_A 398 IRMAAISESNINLCGSHCGVS-IGEDGPSQMAL------EDLAMFRSVPTSTVFYPSDGVATEKAVE----LAANTKGIC 466 (616)
T ss_dssp HHHHHHTTCCEEEEEESBSGG-GCTTCGGGCBS------SHHHHHHTSTTEEEECCCSHHHHHHHHH----HHHTCCSEE
T ss_pred HHHHHHhCCCeEEEEECCCcc-ccCCCCcccCH------HHHHHhcCCCCCEEEecCCHHHHHHHHH----HHHhcCCCE
Confidence 988888999988875432221 22211223222 2356777765543 34456666655554 444557999
Q ss_pred EEEeCCCC
Q 007800 187 YISISCNL 194 (589)
Q Consensus 187 ~i~iP~dv 194 (589)
+|..|.+-
T Consensus 467 ~ir~~r~~ 474 (616)
T 3mos_A 467 FIRTSRPE 474 (616)
T ss_dssp EEECCSSC
T ss_pred EEEEeCCC
Confidence 99998753
No 59
>2iht_A Carboxyethylarginine synthase; thiamin diphosphate complex, transferase; HET: MSE TPP; 2.00A {Streptomyces clavuligerus} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1upb_A* 1upc_A* 1upa_A* 2ihu_A* 2ihv_A*
Probab=93.91 E-value=0.28 Score=53.38 Aligned_cols=150 Identities=13% Similarity=0.095 Sum_probs=98.3
Q ss_pred HHHHHHHHhhCCCCCEEEecCCcc-ccccc-cccccCCCeeEeccCccchhhHHHHHHHHhhhcCCCcEEEEEcch-hhc
Q 007800 394 NVLFKHIQDMLSGDTAVIAETGDS-WFNCQ-KLRLPENCGYEFQMQYGSIGWSVGATLGYAQAAKDKRVIACIGDG-SFQ 470 (589)
Q Consensus 394 ~~~~~~L~~~l~~~~iiv~d~G~~-~~~~~-~~~~~~~~~~~~~~~~g~mG~~l~~aiGaala~~~~~vv~i~GDG-sf~ 470 (589)
..+++.|.+. .=+. ++.=-|.. ..... .+. . .+++....-. .+.-+|.|.+.+. +++.+|++-=| +..
T Consensus 16 ~~l~~~L~~~-GV~~-vfg~PG~~~~~~l~~al~--~-i~~i~~~~E~---~Aa~~A~Gyar~t-g~p~v~~~TsGpG~~ 86 (573)
T 2iht_A 16 HALLSRLRDH-GVGK-VFGVVGREAASILFDEVE--G-IDFVLTRHEF---TAGVAADVLARIT-GRPQACWATLGPGMT 86 (573)
T ss_dssp HHHHHHHHHT-TCCE-EEECCCGGGGTCCSCSST--T-CEEEECSSHH---HHHHHHHHHHHHH-CSCEEEEECTTHHHH
T ss_pred HHHHHHHHHC-CCCE-EEEecCCcchhHHHHHHc--C-CeEEeeCCHH---HHHHHHHHHHHHH-CCCEEEEEccCchHH
Confidence 4455666553 3233 44445555 33222 122 2 5566554433 3445678887774 67888877666 444
Q ss_pred ccHHHHHHHHHhCCCeEEEEEeCCchhhhhhhcCCCCCCCCCCChHHHHHHccCCCCCccEEEeCCHHHHHHHHHHhhh-
Q 007800 471 VTAQEISTMIRCGQRSIIFLINNGGYTIEVEIHDGPYNVIKNWDYTGLVNAIHNGEGKCWTAKVRSEDELTEAMKTATG- 549 (589)
Q Consensus 471 ~~~~el~ta~~~~l~v~ivv~nN~~~~~~~~~~~~~~~~~~~~d~~~la~a~G~~~~~~~~~~v~~~~~l~~al~~a~~- 549 (589)
-....+.+|...++|+++|.-+-....... ...+..+|...+.+.+-- +..++.+++++...+++|+.
T Consensus 87 N~~~~v~~A~~~~~Pll~itg~~~~~~~~~------~~~~Q~~d~~~~~~~~~k-----~~~~v~~~~~~~~~i~~A~~~ 155 (573)
T 2iht_A 87 NLSTGIATSVLDRSPVIALAAQSESHDIFP------NDTHQCLDSVAIVAPMSK-----YAVELQRPHEITDLVDSAVNA 155 (573)
T ss_dssp HHHHHHHHHHHHTCCEEEEEEESCGGGCCT------TTSTTCCCHHHHHGGGSS-----EEEECCSGGGHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhCCCEEEEcccCcccccCC------cCccccCCHHHHHHhHhh-----EEEEcCCHHHHHHHHHHHHHH
Confidence 458999999999999999988776543311 011245699999998876 78899999988888888775
Q ss_pred -c-CCCCeEEEEEEcC
Q 007800 550 -E-QKDSLCFIEVFVH 563 (589)
Q Consensus 550 -~-~~~gp~viev~~~ 563 (589)
. ...||+.|++..|
T Consensus 156 A~~~~~GPV~l~iP~d 171 (573)
T 2iht_A 156 AMTEPVGPSFISLPVD 171 (573)
T ss_dssp HTBSSCCCEEEEEEHH
T ss_pred HhcCCCceEEEEecch
Confidence 2 2358999999876
No 60
>2pan_A Glyoxylate carboligase; thiamin-diphosphate (THDP), thimain-dependent enzymes, FAD, lyase; HET: FAD TDP 1PE; 2.70A {Escherichia coli}
Probab=93.91 E-value=0.4 Score=52.60 Aligned_cols=119 Identities=7% Similarity=0.025 Sum_probs=85.1
Q ss_pred CeeEeccCccchhhHHHHHHHHhhhcCCCcEEEEEcch-hhcccHHHHHHHHHhCCCeEEEEEeCCchhhhhhhcCCCCC
Q 007800 430 CGYEFQMQYGSIGWSVGATLGYAQAAKDKRVIACIGDG-SFQVTAQEISTMIRCGQRSIIFLINNGGYTIEVEIHDGPYN 508 (589)
Q Consensus 430 ~~~~~~~~~g~mG~~l~~aiGaala~~~~~vv~i~GDG-sf~~~~~el~ta~~~~l~v~ivv~nN~~~~~~~~~~~~~~~ 508 (589)
.+++....-. .+.-+|.|.+.+..+++.+|++-=| +..-....+.+|...++|+++|.-+-...... .+.
T Consensus 66 i~~i~~~~E~---~Aa~~A~GyAr~tgg~~~v~~~TsGpG~~N~~~~l~~A~~~~vPlvvItg~~p~~~~~----~~~-- 136 (616)
T 2pan_A 66 IRHILARHVE---GASHMAEGYTRATAGNIGVCLGTSGPAGTDMITALYSASADSIPILCITGQAPRARLH----KED-- 136 (616)
T ss_dssp CEEEECSSHH---HHHHHHHHHHHHSTTCCEEEEECSTHHHHTSHHHHHHHHHTTCCEEEEEEECCGGGTT----TTC--
T ss_pred CcEEeeCCHH---HHHHHHHHHHHhcCCCceEEEeCCCchHHHHHHHHHHHHhcCCCEEEEecCCcccccC----ccc--
Confidence 3455544333 4456788888874367777776656 34455899999999999999998877654331 111
Q ss_pred CCCCCChHHHHHHccCCCCCccEEEeCCHHHHHHHHHHhhh--c-CCCCeEEEEEEcC
Q 007800 509 VIKNWDYTGLVNAIHNGEGKCWTAKVRSEDELTEAMKTATG--E-QKDSLCFIEVFVH 563 (589)
Q Consensus 509 ~~~~~d~~~la~a~G~~~~~~~~~~v~~~~~l~~al~~a~~--~-~~~gp~viev~~~ 563 (589)
+...|...+++.+-- ..+++.+++++...+++|+. . ...||+.|+++.|
T Consensus 137 -~Q~~d~~~~~~~~tk-----~~~~v~~~~~i~~~l~~A~~~A~~~r~GPV~l~iP~d 188 (616)
T 2pan_A 137 -FQAVDIEAIAKPVSK-----MAVTVREAALVPRVLQQAFHLMRSGRPGPVLVDLPFD 188 (616)
T ss_dssp -TTCCCHHHHHGGGSS-----EEEECCSGGGHHHHHHHHHHHHHSSSCCCEEEEEEHH
T ss_pred -ccccCHHHHHHHHHH-----hhcccCCHHHHHHHHHHHHHHHhcCCCceEEEEcchh
Confidence 245689999999876 78899999999888888875 1 2368999999875
No 61
>1qs0_B 2-oxoisovalerate dehydrogenase beta-subunit; heterotetramer, THDP cofactor, oxidoreductase; HET: TDP; 2.40A {Pseudomonas putida} SCOP: c.36.1.7 c.48.1.2 PDB: 2bp7_B
Probab=93.84 E-value=0.23 Score=50.15 Aligned_cols=115 Identities=15% Similarity=0.028 Sum_probs=77.4
Q ss_pred eEEec-CchhHHHHhhhhhhhccCceEEEEeCCcchHHHHHHHHH-h----hh----cCCcEEEEeCCCCccccCCccce
Q 007800 67 NLVGC-CNELNAGYAADGYARSRGVGACVVTFTVGGLSVLNAIAG-A----YS----ENLPVICIVGGPNSNDYGTNRIL 136 (589)
Q Consensus 67 ~~v~~-~hE~~A~~~A~gyar~tg~~v~~~t~GpG~~n~~~~l~~-A----~~----~~~PllvI~g~~~~~~~~~~~~~ 136 (589)
+++.+ ..|++++.+|.|+|...-+.++..|.++++.-+...+.+ + |. .+.|++++...... ..+ ..
T Consensus 53 r~~~~gisE~~~~~~a~G~A~~G~rp~~~~t~~~F~~~a~dqi~~~~a~~~~~~~~~~~~pvv~~~~~~g~---~~G-~t 128 (338)
T 1qs0_B 53 RVFDAPISESGIVGTAVGMGAYGLRPVVEIQFADYFYPASDQIVSEMARLRYRSAGEFIAPLTLRMPCGGG---IYG-GQ 128 (338)
T ss_dssp TEEECCSCHHHHHHHHHHHHHHTCEEEEECSCGGGCGGGHHHHHTTTTTHHHHTTTSSCCCCEEEEEECCS---SSC-CS
T ss_pred cEEEccccHHHHHHHHHHHHhCCCEEEEEeccHhHHHHHHHHHHHHHHHHhhhcCCCCCCCEEEEEeCCCC---CCC-cc
Confidence 77775 799999999999999843466656888888777777763 3 21 35899887632221 111 23
Q ss_pred eeecCCCChHHHHHhhhcceeE-EEEeCChhhHHHHHHHHHHHhHhcCCcEEEEeCCCCC
Q 007800 137 HHTIGLPDFTQELRCFQAITCS-QAVVNNLGDAHELIDTAISTALKESKPVYISISCNLP 195 (589)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~tk~-~~~v~~~~~~~~~l~~A~~~a~~~~gPV~i~iP~dv~ 195 (589)
||.+. ...+++.+-.+ ...+.+++++..+++.|++. ++||+|..|..+.
T Consensus 129 h~s~~------d~~~l~~iP~l~V~~Psd~~e~~~~l~~A~~~----~~Pv~i~~p~~l~ 178 (338)
T 1qs0_B 129 THSQS------PEAMFTQVCGLRTVMPSNPYDAKGLLIASIEC----DDPVIFLEPKRLY 178 (338)
T ss_dssp SSSCC------CHHHHTTSTTCEEECCCSHHHHHHHHHHHHHS----SSCEEEEEEGGGS
T ss_pred ccccc------HHHHHhcCCCCEEEeeCCHHHHHHHHHHHHhc----CCcEEEEEchHhh
Confidence 44332 24556665443 44567888998888888863 6999998875553
No 62
>1t9b_A Acetolactate synthase, mitochondrial; acetohydroxyacid synthase, herbicide, sulfonylurea, thiamin diphosphate, FAD, inhibitor; HET: 1CS P25 FAD NSP P22 YF3; 2.20A {Saccharomyces cerevisiae} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1n0h_A* 1t9a_A* 1t9c_A* 1t9d_A* 1jsc_A*
Probab=93.58 E-value=0.34 Score=53.76 Aligned_cols=152 Identities=14% Similarity=0.202 Sum_probs=97.8
Q ss_pred HHHHHHHHhhCCCCCEEEecCCccccccc-cccccCCCeeEeccCccchhhHHHHHHHHhhhcCCCcEEEEEcch-hhcc
Q 007800 394 NVLFKHIQDMLSGDTAVIAETGDSWFNCQ-KLRLPENCGYEFQMQYGSIGWSVGATLGYAQAAKDKRVIACIGDG-SFQV 471 (589)
Q Consensus 394 ~~~~~~L~~~l~~~~iiv~d~G~~~~~~~-~~~~~~~~~~~~~~~~g~mG~~l~~aiGaala~~~~~vv~i~GDG-sf~~ 471 (589)
..+++.|.+. .=+. ++.=-|....... .+......+++....-. .+.-+|.|.+.+. +++.+|++-=| +..-
T Consensus 86 ~~lv~~L~~~-GV~~-vFg~PG~~~~pl~dal~~~~~i~~v~~~hE~---~Aa~aAdGyAr~t-Gkpgvv~~TsGpG~~N 159 (677)
T 1t9b_A 86 QIFNEMMSRQ-NVDT-VFGYPGGAILPVYDAIHNSDKFNFVLPKHEQ---GAGHMAEGYARAS-GKPGVVLVTSGPGATN 159 (677)
T ss_dssp HHHHHHHHHT-TCCE-EEECCCGGGHHHHHHTTTCSSSEEECCSSHH---HHHHHHHHHHHHH-SSCEEEEECSTHHHHT
T ss_pred HHHHHHHHHc-CCCE-EEEecCccHHHHHHHHHhCCCCeEEEeCChH---HHHHHHHHHHHHH-CCCEEEEECCChHHHH
Confidence 3455566553 3333 4444554433221 12111234566554433 4455678888774 67877777666 4555
Q ss_pred cHHHHHHHHHhCCCeEEEEEeCCchhhhhhhcCCCCCCCCCCChHHHHHHccCCCCCccEEEeCCHHHHHHHHHHhhh--
Q 007800 472 TAQEISTMIRCGQRSIIFLINNGGYTIEVEIHDGPYNVIKNWDYTGLVNAIHNGEGKCWTAKVRSEDELTEAMKTATG-- 549 (589)
Q Consensus 472 ~~~el~ta~~~~l~v~ivv~nN~~~~~~~~~~~~~~~~~~~~d~~~la~a~G~~~~~~~~~~v~~~~~l~~al~~a~~-- 549 (589)
.+..+.+|...++|+++|.-+-....+. .+. +..+|...+.+.+-- +.+++.+++++...+++|+.
T Consensus 160 ~~~gia~A~~d~vPllvItG~~~~~~~g----~~a---~Q~~Dq~~i~~~~tk-----~~~~v~~~~~i~~~i~~A~~~A 227 (677)
T 1t9b_A 160 VVTPMADAFADGIPMVVFTGQVPTSAIG----TDA---FQEADVVGISRSCTK-----WNVMVKSVEELPLRINEAFEIA 227 (677)
T ss_dssp THHHHHHHHHHTCCEEEEEEECCTTTTT----SCC---TTCCCHHHHTGGGSS-----EEEECCSGGGHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCEEEEeCCCChhhcC----CCC---ccccCHHHHhhhhee-----EEEEcCCHHHHHHHHHHHHHHH
Confidence 6999999999999999998876644331 111 245688899888875 78899999999888888875
Q ss_pred c-CCCCeEEEEEEcC
Q 007800 550 E-QKDSLCFIEVFVH 563 (589)
Q Consensus 550 ~-~~~gp~viev~~~ 563 (589)
. ...||++|++..|
T Consensus 228 ~~grpGPV~l~lP~D 242 (677)
T 1t9b_A 228 TSGRPGPVLVDLPKD 242 (677)
T ss_dssp HSSSCCEEEEEEEHH
T ss_pred hhCCCceEEEEcCHH
Confidence 2 2468999999943
No 63
>1v5e_A Pyruvate oxidase; oxidoreductase, flavoprotein; HET: FAD; 1.60A {Aerococcus viridans} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 2dji_A* 1v5f_A* 1v5g_A*
Probab=93.25 E-value=0.5 Score=51.52 Aligned_cols=118 Identities=7% Similarity=-0.006 Sum_probs=83.9
Q ss_pred CeeEeccCccchhhHHHHHHHHhhhcCCCcEEEEEcch-hhcccHHHHHHHHHhCCCeEEEEEeCCchhhhhhhcCCCCC
Q 007800 430 CGYEFQMQYGSIGWSVGATLGYAQAAKDKRVIACIGDG-SFQVTAQEISTMIRCGQRSIIFLINNGGYTIEVEIHDGPYN 508 (589)
Q Consensus 430 ~~~~~~~~~g~mG~~l~~aiGaala~~~~~vv~i~GDG-sf~~~~~el~ta~~~~l~v~ivv~nN~~~~~~~~~~~~~~~ 508 (589)
.+++....-. .+.-+|.|.+.+. +++.+|++-=| ++....+.+.+|...++|+++|.-+-....+. .+.
T Consensus 44 i~~i~~~~E~---~Aa~~A~GyAr~t-gk~~v~~~tsGpG~~N~~~gl~~A~~~~vPll~Itg~~p~~~~g----~~~-- 113 (590)
T 1v5e_A 44 VKFLQVKHEE---VGAMAAVMQSKFG-GNLGVTVGSGGPGASHLINGLYDAAMDNIPVVAILGSRPQRELN----MDA-- 113 (590)
T ss_dssp CEEEECSSHH---HHHHHHHHHHHTT-CCCCEEEECTTHHHHTTHHHHHHHHHHTCCEEEEEEECCGGGTT----TTC--
T ss_pred CeEEeeCCHH---HHHHHHHHHHHHH-CCCEEEEeCcChHHHHHHHHHHHHHhcCCCEEEEcCCCCcccCC----CCc--
Confidence 4455544333 4556788888874 67877777666 45556999999999999999998887654331 111
Q ss_pred CCCCCChHHHHHHccCCCCCccEEEeCCHHHHHHHHHHhhh---cCCCCeEEEEEEcCC
Q 007800 509 VIKNWDYTGLVNAIHNGEGKCWTAKVRSEDELTEAMKTATG---EQKDSLCFIEVFVHK 564 (589)
Q Consensus 509 ~~~~~d~~~la~a~G~~~~~~~~~~v~~~~~l~~al~~a~~---~~~~gp~viev~~~~ 564 (589)
+...|...+.+.+-- +...+.+++++...+++|+. ....||+.| +..|-
T Consensus 114 -~Q~~d~~~~~~~~tk-----~~~~v~~~~~~~~~i~~A~~~A~~~~~GPV~l-iP~dv 165 (590)
T 1v5e_A 114 -FQELNQNPMYDHIAV-----YNRRVAYAEQLPKLVDEAARMAIAKRGVAVLE-VPGDF 165 (590)
T ss_dssp -TTCCCCHHHHHTTCS-----EEEECCSGGGHHHHHHHHHHHHHHTTSEEEEE-EETTG
T ss_pred -ccccCHHHHHHhhcc-----EEEEeCCHHHHHHHHHHHHHHHhcCCCceEEE-Eccch
Confidence 234688899988865 78899999888777777765 234489999 98774
No 64
>2o1s_A 1-deoxy-D-xylulose-5-phosphate synthase; DXS, thiamine, isoprenoid, transferase; HET: TDP; 2.40A {Escherichia coli}
Probab=93.23 E-value=0.89 Score=49.84 Aligned_cols=151 Identities=12% Similarity=0.165 Sum_probs=93.7
Q ss_pred ccHHHHHHHHHHHcC--CCEEEec----CCc-chHHHHHhhhcCCCCeEEe-cCchhHHHHhhhhhhhccCc-eEEEEeC
Q 007800 27 GTLGRHLARRLVEIG--AKDVFSV----PGD-FNLTLLDHLIAEPELNLVG-CCNELNAGYAADGYARSRGV-GACVVTF 97 (589)
Q Consensus 27 ~~~a~~i~~~L~~~G--V~~vfg~----pG~-~~~~l~~al~~~~~i~~v~-~~hE~~A~~~A~gyar~tg~-~v~~~t~ 97 (589)
.+..+++.+.|.+.. -+.|+.+ +++ ....+.+.+ ++ +++. ...|++++.+|.|+|.. |. .++.+ .
T Consensus 319 ~~~~~~~~~~l~~~~~~d~~v~~~~~d~~~~~~~~~~~~~~---~~-r~~~~gIaE~~~~~~a~G~A~~-G~rp~~~~-~ 392 (621)
T 2o1s_A 319 PSYSKIFGDWLCETAAKDNKLMAITPAMREGSGMVEFSRKF---PD-RYFDVAIAEQHAVTFAAGLAIG-GYKPIVAI-Y 392 (621)
T ss_dssp CBHHHHHHHHHHHHHHHCTTEEEEESSCTTTTTCHHHHHHC---TT-TEEECCSCHHHHHHHHHHHHHT-TCEEEEEE-E
T ss_pred HHHHHHHHHHHHHHHhhCcCEEEEeCcccCCcChHHHHHhC---CC-ceEecCcCHHHHHHHHHHHHHC-CCEEEEEe-h
Confidence 456666665554432 2345554 443 333444432 33 5666 56999999999999987 65 55554 7
Q ss_pred CcchHHHHHHH-HHhhhcCCcEEEEeCCCCccccCCccceeeecCCCChHHHHHhhhcceeE-EEEeCChhhHHHHHHHH
Q 007800 98 TVGGLSVLNAI-AGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCFQAITCS-QAVVNNLGDAHELIDTA 175 (589)
Q Consensus 98 GpG~~n~~~~l-~~A~~~~~PllvI~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tk~-~~~v~~~~~~~~~l~~A 175 (589)
++.+.-+.-.+ ..+...+.|++++...... .+.+...|+.. ....+++.+..+ ...+.++.++..++..|
T Consensus 393 ~~F~~~a~dqi~~~~a~~~~pvv~~~~~~g~--~g~~G~tH~~~------~d~~~~~~iP~l~v~~P~d~~e~~~~l~~a 464 (621)
T 2o1s_A 393 STFLQRAYDQVLHDVAIQKLPVLFAIDRAGI--VGADGQTHQGA------FDLSYLRCIPEMVIMTPSDENECRQMLYTG 464 (621)
T ss_dssp TTGGGGGHHHHHHTTTTTTCCCEEEEESCBC--CCTTCGGGCBC------SHHHHTTTSTTCEEECCSSHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHhcCCCEEEEEECCcc--CCCCCCccCch------HHHHHHhcCCCCEEEecCCHHHHHHHHHHH
Confidence 77776666554 4467789999888744332 12211234321 235666666443 44567888888888887
Q ss_pred HHHhHhcCCcEEEEeCCCC
Q 007800 176 ISTALKESKPVYISISCNL 194 (589)
Q Consensus 176 ~~~a~~~~gPV~i~iP~dv 194 (589)
++.+ ++||+|..|...
T Consensus 465 ~~~~---~~Pv~i~~~r~~ 480 (621)
T 2o1s_A 465 YHYN---DGPSAVRYPRGN 480 (621)
T ss_dssp HHCC---SSCEEEECCSSB
T ss_pred HHcC---CCCEEEEeCCCC
Confidence 7653 699999999754
No 65
>3eya_A Pyruvate dehydrogenase [cytochrome]; pyruvate oxidase, membrane-associated flavoprotein dehydrogenase, interactions with lipids cell membrane; HET: TDP FAD; 2.50A {Escherichia coli} PDB: 3ey9_A*
Probab=93.01 E-value=0.34 Score=52.35 Aligned_cols=118 Identities=9% Similarity=-0.011 Sum_probs=81.5
Q ss_pred CeeEeccCccchhhHHHHHHHHhhhcCCCcEEEEEcch-hhcccHHHHHHHHHhCCCeEEEEEeCCchhhhhhhcCCCCC
Q 007800 430 CGYEFQMQYGSIGWSVGATLGYAQAAKDKRVIACIGDG-SFQVTAQEISTMIRCGQRSIIFLINNGGYTIEVEIHDGPYN 508 (589)
Q Consensus 430 ~~~~~~~~~g~mG~~l~~aiGaala~~~~~vv~i~GDG-sf~~~~~el~ta~~~~l~v~ivv~nN~~~~~~~~~~~~~~~ 508 (589)
.+++....-. .+.-+|.|.+.+. +++.+|++-=| +..-....+.+|...++|+++|.-+-....+. .+.
T Consensus 42 i~~i~~~~E~---~Aa~~A~GyAr~t-g~~~v~~~TsGpG~~N~~~gi~~A~~~~vPvl~itg~~~~~~~~----~~~-- 111 (549)
T 3eya_A 42 IEWMSTRHEE---VAAFAAGAEAQLS-GELAVCAGSCGPGNLHLINGLFDCHRNHVPVLAIAAHIPSSEIG----SGY-- 111 (549)
T ss_dssp SEEEECSSHH---HHHHHHHHHHHHH-SSCEEEEECTTHHHHTTHHHHHHHHHTTCCEEEEEEESCGGGTT----SCC--
T ss_pred CeEEEeCChH---HHHHHHHHHHHHh-CCCEEEEeCCCCcHhhhHHHHHHHHhhCCCEEEEeCCCchhhcC----CCC--
Confidence 4455544333 3445677887764 67888887666 45556899999999999999988765533221 111
Q ss_pred CCCCCChHHHHHHccCCCCCccEEEeCCHHHHHHHHHHhhh--cCCCCeEEEEEEcC
Q 007800 509 VIKNWDYTGLVNAIHNGEGKCWTAKVRSEDELTEAMKTATG--EQKDSLCFIEVFVH 563 (589)
Q Consensus 509 ~~~~~d~~~la~a~G~~~~~~~~~~v~~~~~l~~al~~a~~--~~~~gp~viev~~~ 563 (589)
+...|...+.+.+-- +..++.+++++...+++|+. ....||+.|+++.|
T Consensus 112 -~Q~~d~~~~~~~~tk-----~~~~v~~~~~~~~~i~~A~~~A~~~~GPV~l~iP~d 162 (549)
T 3eya_A 112 -FQETHPQELFRECSH-----YCELVSSPEQIPQVLAIAMRKAVLNRGVSVVVLPGD 162 (549)
T ss_dssp -TTCCCHHHHTSTTCS-----EEEECCSGGGHHHHHHHHHHHHHHTTSEEEEEEEHH
T ss_pred -CCccCHHHHHhhhhh-----eEEEeCCHHHHHHHHHHHHHHHhhCCCCEEEEeChh
Confidence 234688888877765 77889999887777777764 22579999999865
No 66
>2r8o_A Transketolase 1, TK 1; reaction intermediate, calcium, metal-binding, thiamine pyrophosphate, transferase; HET: T5X; 1.47A {Escherichia coli K12} SCOP: c.36.1.6 c.36.1.10 c.48.1.1 PDB: 2r5n_A* 2r8p_A* 1qgd_A*
Probab=92.92 E-value=0.61 Score=51.63 Aligned_cols=171 Identities=13% Similarity=0.053 Sum_probs=100.0
Q ss_pred CeEEe-cCchhHHHHhhhhhhhccCc-eEEEEeCCcchHHHHHHHHHhhhcCCcEEEEeCCCCccccCCccceeeecCCC
Q 007800 66 LNLVG-CCNELNAGYAADGYARSRGV-GACVVTFTVGGLSVLNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLP 143 (589)
Q Consensus 66 i~~v~-~~hE~~A~~~A~gyar~tg~-~v~~~t~GpG~~n~~~~l~~A~~~~~PllvI~g~~~~~~~~~~~~~~~~~~~~ 143 (589)
=+++. ...|++++.+|.|+|...|. .++ .|..+-+.-+..++..+-..+.|++++....... .+.+..-||.
T Consensus 402 ~R~id~GIaE~~~v~~a~GlA~~gG~~P~~-~tf~~F~~~~~~~ir~~a~~~lpvv~~~t~~g~~-~G~dG~tHq~---- 475 (669)
T 2r8o_A 402 GNYIHYGVREFGMTAIANGISLHGGFLPYT-STFLMFVEYARNAVRMAALMKQRQVMVYTHDSIG-LGEDGPTHQP---- 475 (669)
T ss_dssp CSEEECCSCHHHHHHHHHHHHHHSSCEEEE-EEEGGGGGTTHHHHHHHHHTTCCCEEEEECCSGG-GCTTCTTTCC----
T ss_pred CCeeecchhHHHHHHHHHHHHHcCCCeEEE-eehHHHHHHHHHHHHHHHhcCCCEEEEEeCCCcC-cCCCCCccCC----
Confidence 35666 55999999999999998675 666 5677777777788888888999998886432222 2211122322
Q ss_pred ChHHHHHhhhccee-EEEEeCChhhHHHHHHHHHHHhHhcCCcEEEEeCCCCCCCCCCCCCCCCCCccCCCCCCChhhHH
Q 007800 144 DFTQELRCFQAITC-SQAVVNNLGDAHELIDTAISTALKESKPVYISISCNLPGIPHPTFARDPVPFFLAPKVSNQLGLE 222 (589)
Q Consensus 144 ~~~~~~~~~~~~tk-~~~~v~~~~~~~~~l~~A~~~a~~~~gPV~i~iP~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (589)
..+..+++.+-. ....+.++.++..+++.|++.. .+||+|.+|..... .. + .. ....
T Consensus 476 --~edla~lr~iP~l~V~~Pad~~E~~~~l~~a~~~~---~~Pv~i~~~r~~~~----~~-----~-------~~-~~~~ 533 (669)
T 2r8o_A 476 --VEQVASLRVTPNMSTWRPCDQVESAVAWKYGVERQ---DGPTALILSRQNLA----QQ-----E-------RT-EEQL 533 (669)
T ss_dssp --SSHHHHHHTSTTCEEECCSSHHHHHHHHHHHHHCS---SSCEEEECCSSEEC----CC-----C-------CC-HHHH
T ss_pred --HHHHHHhcCCCCCEEEecCCHHHHHHHHHHHHHhC---CCcEEEEeCCCCCC----CC-----C-------Cc-cchh
Confidence 223566665533 3445567777766666666532 69999998864311 00 0 00 0000
Q ss_pred HHHHHHHHHHHh--cCCCEEEeCcccchhhHHHHHHHHHHHhCCc
Q 007800 223 AAVEATADFLNK--AVKPVLVGGPNIRVAKAQKAFIELADATGYP 265 (589)
Q Consensus 223 ~~i~~~~~~L~~--a~rpviv~G~g~~~~~~~~~l~~lae~~~~P 265 (589)
..+..-+..+++ .+.-++|++.|.-...+.++...|.++ |+.
T Consensus 534 ~~~~~G~~vl~~~~g~~dv~iva~G~~v~~al~Aa~~L~~~-Gi~ 577 (669)
T 2r8o_A 534 ANIARGGYVLKDCAGQPELIFIATGSEVELAVAAYEKLTAE-GVK 577 (669)
T ss_dssp HHGGGSCEEEECCSSSCSEEEEECGGGHHHHHHHHHHHHHH-TCC
T ss_pred hhccCCCEEEeccCCCCCEEEEEECHHHHHHHHHHHHHHhc-CCC
Confidence 001000112222 124577777777666677777777665 654
No 67
>2o1x_A 1-deoxy-D-xylulose-5-phosphate synthase; thiamin, isoprenoid, DXS, transferase; HET: TDP; 2.90A {Deinococcus radiodurans}
Probab=92.80 E-value=0.55 Score=51.59 Aligned_cols=151 Identities=13% Similarity=0.136 Sum_probs=93.9
Q ss_pred cccHHHHHHHHHHHcC--CCEEEec----CCc-chHHHHHhhhcCCCCeEEe-cCchhHHHHhhhhhhhccCc-eEEEEe
Q 007800 26 VGTLGRHLARRLVEIG--AKDVFSV----PGD-FNLTLLDHLIAEPELNLVG-CCNELNAGYAADGYARSRGV-GACVVT 96 (589)
Q Consensus 26 ~~~~a~~i~~~L~~~G--V~~vfg~----pG~-~~~~l~~al~~~~~i~~v~-~~hE~~A~~~A~gyar~tg~-~v~~~t 96 (589)
..+..+++.+.|.+.. -+.|+.+ +++ ....+.+.+ ++ +++. ...|++++.+|.|.|.. |. .++.+
T Consensus 321 ~~~~~~~~~~~l~~~~~~d~~v~~i~~d~~~~~~~~~f~~~~---~~-r~~~~gIaE~~~~~~a~G~A~~-G~rp~~~~- 394 (629)
T 2o1x_A 321 AYSWSAAFGEAVTEWAKTDPRTFVVTPAMREGSGLVEFSRVH---PH-RYLDVGIAEEVAVTTAAGMALQ-GMRPVVAI- 394 (629)
T ss_dssp CCBHHHHHHHHHHHHHHHCTTEEEEESSCTTTTTCHHHHHHC---GG-GEEECCSCHHHHHHHHHHHHHT-TCEEEEEE-
T ss_pred hHHHHHHHHHHHHHHhhhCcCEEEEeccccCCcChHHHHHhc---Cc-ceEeccccHHHHHHHHHHHHHc-CCEEEEEe-
Confidence 3456666665554432 2346655 443 334444433 22 5666 56999999999999987 65 55554
Q ss_pred CCcchHHHHHHH-HHhhhcCCcEEEEeCCCCccccCCccceeeecCCCChHHHHHhhhcceeE-EEEeCChhhHHHHHHH
Q 007800 97 FTVGGLSVLNAI-AGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCFQAITCS-QAVVNNLGDAHELIDT 174 (589)
Q Consensus 97 ~GpG~~n~~~~l-~~A~~~~~PllvI~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tk~-~~~v~~~~~~~~~l~~ 174 (589)
..+.+.-+.-.+ ..+...+.|++++...... .+.+...|+.. .+..+++.+..+ ...+.++.++..++..
T Consensus 395 ~~~F~~~a~dqi~~~~a~~~~pvv~~~~~~g~--~g~dG~tH~~~------~d~a~~r~iP~l~v~~P~d~~e~~~~~~~ 466 (629)
T 2o1x_A 395 YSTFLQRAYDQVLHDVAIEHLNVTFCIDRAGI--VGADGATHNGV------FDLSFLRSIPGVRIGLPKDAAELRGMLKY 466 (629)
T ss_dssp EHHHHGGGHHHHHHTTTTTTCCCEEEEESBBC--CCTTCTTTCBC------SHHHHTTTSTTCEEECCSSHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHhhcCCCEEEEEECCcc--CCCCCcccCcc------HHHHHHHccCCcEEEecCCHHHHHHHHHH
Confidence 677766555454 4467789999888743322 12211233321 235677776554 4456788888888888
Q ss_pred HHHHhHhcCCcEEEEeCCCC
Q 007800 175 AISTALKESKPVYISISCNL 194 (589)
Q Consensus 175 A~~~a~~~~gPV~i~iP~dv 194 (589)
|++. ++||+|.+|...
T Consensus 467 a~~~----~~Pv~i~~~r~~ 482 (629)
T 2o1x_A 467 AQTH----DGPFAIRYPRGN 482 (629)
T ss_dssp HHHS----SSCEEEECCSSB
T ss_pred HHhC----CCCEEEEecCCC
Confidence 8875 699999999754
No 68
>1ik6_A Pyruvate dehydrogenase; E1BETA, tetramer, GXXXG, oxidoreductase; 2.00A {Pyrobaculum aerophilum} SCOP: c.36.1.7 c.48.1.2
Probab=92.69 E-value=0.21 Score=51.05 Aligned_cols=115 Identities=15% Similarity=-0.008 Sum_probs=71.9
Q ss_pred eEEec-CchhHHHHhhhhhhhccCceEEEEeCCcchHHHHHHHHH-hhhc--------CCcEEEEeCCCCccccCCccce
Q 007800 67 NLVGC-CNELNAGYAADGYARSRGVGACVVTFTVGGLSVLNAIAG-AYSE--------NLPVICIVGGPNSNDYGTNRIL 136 (589)
Q Consensus 67 ~~v~~-~hE~~A~~~A~gyar~tg~~v~~~t~GpG~~n~~~~l~~-A~~~--------~~PllvI~g~~~~~~~~~~~~~ 136 (589)
+++.+ ..|++++.+|.|+|....+.++..|.++.+.-+...+.. +... +.||+++...... .+ + .-
T Consensus 99 r~~d~gIaE~~~v~~a~G~A~~G~rpv~~~tf~~Fl~~a~Dqi~~~~a~~~~~~~g~~~~pvv~~~~~gg~--~g-~-g~ 174 (369)
T 1ik6_A 99 RVIDTPLNEGGILGFAMGMAMAGLKPVAEIQFVDFIWLGADELLNHIAKLRYRSGGNYKAPLVVRTPVGSG--TR-G-GL 174 (369)
T ss_dssp TEEECCSCHHHHHHHHHHHHHTTCEEEEECCCC----CCHHHHHHHHHHHHC------CCCCEEEEEECC----------
T ss_pred cEEECcccHHHHHHHHHHHHHCCCeeEEEecchhHHHHHHHHHHHHHHHHHHhhCCCCCCCEEEEEeCCCC--CC-C-Cc
Confidence 66665 499999999999998743466666788887666776655 3222 8998877643321 12 2 12
Q ss_pred eeecCCCChHHHHHhhhcceeE-EEEeCChhhHHHHHHHHHHHhHhcCCcEEEEeCCCCC
Q 007800 137 HHTIGLPDFTQELRCFQAITCS-QAVVNNLGDAHELIDTAISTALKESKPVYISISCNLP 195 (589)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~tk~-~~~v~~~~~~~~~l~~A~~~a~~~~gPV~i~iP~dv~ 195 (589)
||+. .+ ..+++.+..+ ...+.+++++..+++.|++ .++||+|..|..+.
T Consensus 175 ~hs~-----~~-~a~l~~iPnl~V~~Psd~~e~~~ll~~A~~----~~~Pv~i~~p~~l~ 224 (369)
T 1ik6_A 175 YHSN-----SP-EAIFVHTPGLVVVMPSTPYNAKGLLKAAIR----GDDPVVFLEPKILY 224 (369)
T ss_dssp ----------H-HHHHHTCTTCEEECCCSHHHHHHHHHHHHH----SSSCEEEEEEGGGS
T ss_pred cccc-----cH-HHHHcCCCCcEEEecCCHHHHHHHHHHHHh----CCCCEEEEEehhhh
Confidence 3221 12 4667776554 3456788888888888876 46999999887764
No 69
>2q28_A Oxalyl-COA decarboxylase; lyase, oxalate degradation, thiami diphosphate, lyase; HET: TPP ADP MES; 1.74A {Escherichia coli} PDB: 2q27_A* 2q29_A*
Probab=92.57 E-value=0.65 Score=50.31 Aligned_cols=120 Identities=11% Similarity=0.044 Sum_probs=84.3
Q ss_pred CeeEeccCccchhhHHHHHHHHhhhcCCCcEEEEEcch-hhcccHHHHHHHHHhCCCeEEEEEeCCchhhhhhhcCCCCC
Q 007800 430 CGYEFQMQYGSIGWSVGATLGYAQAAKDKRVIACIGDG-SFQVTAQEISTMIRCGQRSIIFLINNGGYTIEVEIHDGPYN 508 (589)
Q Consensus 430 ~~~~~~~~~g~mG~~l~~aiGaala~~~~~vv~i~GDG-sf~~~~~el~ta~~~~l~v~ivv~nN~~~~~~~~~~~~~~~ 508 (589)
.+++....-. .+.-+|.|.+.+. +++.+|++-=| +..-....+.+|...++|+++|.-+-...... ...+.
T Consensus 46 i~~i~~~hE~---~Aa~~A~Gyar~t-g~pgv~~~TsGpG~~N~~~gi~~A~~~~vPll~itg~~~~~~~~--~~~~~-- 117 (564)
T 2q28_A 46 IRYIGFRHEQ---SAGYAAAASGFLT-QKPGICLTVSAPGFLNGLTALANATVNGFPMIMISGSSDRAIVD--LQQGD-- 117 (564)
T ss_dssp CEEEECSSHH---HHHHHHHHHHHHH-SSCEEEEECSHHHHHHHHHHHHHHHHHTCCEEEEEEECCHHHHH--TTSCC--
T ss_pred CcEEeeCCHH---HHHHHHHHHHHHh-CCCEEEEEccCchHHHHHHHHHHHHhcCCCEEEEeCCCCccccC--CCCCc--
Confidence 4455544333 3445677877764 67888887666 44445899999999999999988876643321 00112
Q ss_pred CCCCCChHHHHHHccCCCCCccEEEeCCHHHHHHHHHHhhh--c-CCCCeEEEEEEcC
Q 007800 509 VIKNWDYTGLVNAIHNGEGKCWTAKVRSEDELTEAMKTATG--E-QKDSLCFIEVFVH 563 (589)
Q Consensus 509 ~~~~~d~~~la~a~G~~~~~~~~~~v~~~~~l~~al~~a~~--~-~~~gp~viev~~~ 563 (589)
+..+|...+.+.+-- +..++.+++++...+++|+. . ...||+.|++..|
T Consensus 118 -~Q~~dq~~~~~~~tk-----~~~~v~~~~~~~~~i~~A~~~A~~~~~GPV~l~iP~d 169 (564)
T 2q28_A 118 -YEELDQMNAAKPYAK-----AAFRVNQPQDLGIALARAIRVSVSGRPGGVYLDLPAN 169 (564)
T ss_dssp -TTCCCHHHHHGGGSS-----EEEECCSGGGHHHHHHHHHHHHHSSSCCEEEEEEEHH
T ss_pred -cccccHHHHHHHhhh-----eeeecCCHHHHHHHHHHHHHHHhcCCCceEEEEcCHH
Confidence 244688899988876 78899999888877777775 2 2569999999987
No 70
>2e6k_A Transketolase; structural genomics, NPPSFA, national project protein structural and functional analyses; 2.09A {Thermus thermophilus}
Probab=92.28 E-value=0.41 Score=52.83 Aligned_cols=118 Identities=15% Similarity=0.085 Sum_probs=77.3
Q ss_pred CeEEec-CchhHHHHhhhhhhhccCceEEEEeCCcchHHHHHHHHHhhhcCCcEEEEe-CCCCccccCCccceeeecCCC
Q 007800 66 LNLVGC-CNELNAGYAADGYARSRGVGACVVTFTVGGLSVLNAIAGAYSENLPVICIV-GGPNSNDYGTNRILHHTIGLP 143 (589)
Q Consensus 66 i~~v~~-~hE~~A~~~A~gyar~tg~~v~~~t~GpG~~n~~~~l~~A~~~~~PllvI~-g~~~~~~~~~~~~~~~~~~~~ 143 (589)
=+++.+ ..|++++.+|.|+|...|.-.++.|..+...-+..++..+-..+.|++++. .+... .+.+...|+.
T Consensus 397 ~R~i~~gIaE~~~~~~a~GlA~~Gg~~P~~~t~~~F~~~~~~air~~a~~~lpvv~~~t~~g~g--~G~dG~tHq~---- 470 (651)
T 2e6k_A 397 GRYLHFGVREHAMGAILNGLNLHGGYRAYGGTFLVFSDYMRPAIRLAALMGVPTVFVFTHDSIA--LGEDGPTHQP---- 470 (651)
T ss_dssp CCEEECCSCHHHHHHHHHHHHHHSSCEEEEEEEGGGGGGSHHHHHHHHHHTCCCEEEEECCSGG--GCTTCTTTCC----
T ss_pred CceEecCcCHHHHHHHHHHHHHcCCCEEEEEeHHHHHHHHHHHHHHHHhcCCCEEEEEECCccc--cCCCcCcccc----
Confidence 366665 599999999999998865533444567776666777888888899998884 33322 2222122321
Q ss_pred ChHHHHHhhhccee-EEEEeCChhhHHHHHHHHHHHhHhcCCcEEEEeCCCC
Q 007800 144 DFTQELRCFQAITC-SQAVVNNLGDAHELIDTAISTALKESKPVYISISCNL 194 (589)
Q Consensus 144 ~~~~~~~~~~~~tk-~~~~v~~~~~~~~~l~~A~~~a~~~~gPV~i~iP~dv 194 (589)
..+..+++.+-. ....+.++.++..++..|++.. .+||+|.+|...
T Consensus 471 --~edla~lr~iP~l~V~~Pad~~E~~~~l~~A~~~~---~~Pv~i~~~r~~ 517 (651)
T 2e6k_A 471 --VEHLMSLRAMPNLFVIRPADAYETFYAWLVALRRK---EGPTALVLTRQA 517 (651)
T ss_dssp --SSHHHHHHTSTTCEEECCSSHHHHHHHHHHHHHCC---SSCEEEECCSSC
T ss_pred --HHHHHHhcCCCCcEEEecCCHHHHHHHHHHHHHcC---CCCEEEEEeCCC
Confidence 223566666543 3445677777777777766532 699999998653
No 71
>2c31_A Oxalyl-COA decarboxylase; oxalate, thiamin diphosphate, flavoprotein, lyase, thiamine pyrophosphate; HET: TZD ADP; 1.73A {Oxalobacter formigenes} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 2ji6_A* 2ji7_A* 2ji8_A* 2ji9_A* 2jib_A*
Probab=92.16 E-value=0.67 Score=50.25 Aligned_cols=120 Identities=7% Similarity=0.005 Sum_probs=83.8
Q ss_pred CeeEeccCccchhhHHHHHHHHhhhcCCCcEEEEEcch-hhcccHHHHHHHHHhCCCeEEEEEeCCchhhhhhhcCCCCC
Q 007800 430 CGYEFQMQYGSIGWSVGATLGYAQAAKDKRVIACIGDG-SFQVTAQEISTMIRCGQRSIIFLINNGGYTIEVEIHDGPYN 508 (589)
Q Consensus 430 ~~~~~~~~~g~mG~~l~~aiGaala~~~~~vv~i~GDG-sf~~~~~el~ta~~~~l~v~ivv~nN~~~~~~~~~~~~~~~ 508 (589)
.+++....-. .+.-+|.|.+.+. +++.+|++-=| +..-....+.+|...++|+++|.-+-....... ..+.
T Consensus 48 i~~i~~~~E~---~Aa~~A~GyAr~t-g~pgv~~~TsGpG~~N~~~~i~~A~~~~vPll~itg~~~~~~~~~--~~~~-- 119 (568)
T 2c31_A 48 QRFYSFRHEQ---HAGYAASIAGYIE-GKPGVCLTVSAPGFLNGVTSLAHATTNCFPMILLSGSSEREIVDL--QQGD-- 119 (568)
T ss_dssp CEEEECSSHH---HHHHHHHHHHHHH-SSCEEEEECSHHHHHHHHHHHHHHHHHTCCEEEEEEECCHHHHHT--TCCC--
T ss_pred CcEEEeCcHH---HHHHHHHHHHHHh-CCCEEEEEcCCccHHHHHHHHHHHHhcCCCEEEEccCCCccccCC--CCCc--
Confidence 4455544433 3445677877764 67878777666 445558999999999999999988766433210 0112
Q ss_pred CCCCCChHHHHHHccCCCCCccEEEeCCHHHHHHHHHHhhh--cC-CCCeEEEEEEcC
Q 007800 509 VIKNWDYTGLVNAIHNGEGKCWTAKVRSEDELTEAMKTATG--EQ-KDSLCFIEVFVH 563 (589)
Q Consensus 509 ~~~~~d~~~la~a~G~~~~~~~~~~v~~~~~l~~al~~a~~--~~-~~gp~viev~~~ 563 (589)
+..+|...+.+.+-- ...++.+++++...+++|+. .. ..||+.|++..|
T Consensus 120 -~Q~~dq~~~~~~~tk-----~~~~v~~~~~~~~~i~~A~~~A~~~~~GPV~l~iP~d 171 (568)
T 2c31_A 120 -YEEMDQMNVARPHCK-----ASFRINSIKDIPIGIARAVRTAVSGRPGGVYVDLPAK 171 (568)
T ss_dssp -TTCCCHHHHSGGGSS-----EEEECCSGGGHHHHHHHHHHHHHSSSCCEEEEEEETH
T ss_pred -ccccCHHHHHHhhhh-----eeeecCCHHHHHHHHHHHHHHhcCCCCceEEEeCCHH
Confidence 234688888888865 78889999888877777775 22 569999999988
No 72
>4feg_A Pyruvate oxidase; carbanion, structure activity relationship, oxidation-reduct umpolung, thiamine diphosphate, reaction intermediate; HET: TDM FAD GOL; 1.09A {Lactobacillus plantarum} PDB: 4fee_A* 1y9d_A* 2ez9_A* 2ez4_A* 2ez8_A* 2ezt_A* 2ezu_A* 1pow_A* 1pox_A*
Probab=92.14 E-value=0.27 Score=53.78 Aligned_cols=119 Identities=8% Similarity=0.020 Sum_probs=80.8
Q ss_pred CCeeEeccCccchhhHHHHHHHHhhhcCCCcEEEEEcch-hhcccHHHHHHHHHhCCCeEEEEEeCCchhhhhhhcCCCC
Q 007800 429 NCGYEFQMQYGSIGWSVGATLGYAQAAKDKRVIACIGDG-SFQVTAQEISTMIRCGQRSIIFLINNGGYTIEVEIHDGPY 507 (589)
Q Consensus 429 ~~~~~~~~~~g~mG~~l~~aiGaala~~~~~vv~i~GDG-sf~~~~~el~ta~~~~l~v~ivv~nN~~~~~~~~~~~~~~ 507 (589)
..+++....-. .+.-+|.|.+.+. +++.+|++-=| +....++.+.+|...++|+++|.-+-....+. .+.
T Consensus 50 ~i~~i~~~hE~---~Aa~aA~GyAr~t-g~~gv~~~TsGpG~~N~~~gia~A~~~~vPvl~itG~~~~~~~~----~~~- 120 (603)
T 4feg_A 50 RIHYIQVRHEE---VGAMAAAADAKLT-GKIGVCFGSAGPGGTHLMNGLYDAREDHVPVLALIGQFGTTGMN----MDT- 120 (603)
T ss_dssp TSEEEECSSHH---HHHHHHHHHHHHH-SSCEEEEECTTHHHHTTHHHHHHHHHTTCCEEEEEEECCTTTTT----SCC-
T ss_pred CCeEEEecChH---HHHHHHHHHHHHh-CCceEEEecCCchHHHHHHHHHHHHHcCCCEEEEecCCcccccC----CCc-
Confidence 34566554433 3445677877764 67888877666 45556899999999999999998765543221 111
Q ss_pred CCCCCCChHHHHHHccCCCCCccEEEeCCHHHHHHHHHHhhh--cCCCCeEEEEEEcC
Q 007800 508 NVIKNWDYTGLVNAIHNGEGKCWTAKVRSEDELTEAMKTATG--EQKDSLCFIEVFVH 563 (589)
Q Consensus 508 ~~~~~~d~~~la~a~G~~~~~~~~~~v~~~~~l~~al~~a~~--~~~~gp~viev~~~ 563 (589)
+...|...+.+.+-- +..++.+++++...+++|+. ....||+.|+++.|
T Consensus 121 --~Q~~d~~~~~~~~tk-----~~~~v~~~~~~~~~i~~A~~~A~~~~GPV~l~iP~d 171 (603)
T 4feg_A 121 --FQEMNENPIYADVAD-----YNVTAVNAATLPHVIDEAIRRAYAHQGVAVVQIPVD 171 (603)
T ss_dssp --TTCCCCGGGGTTTCS-----EEEECCCSTTHHHHHHHHHHHHHHHTSEEEEEEETT
T ss_pred --cccccHHHHhhhhce-----EEEEcCCHHHHHHHHHHHHHHHhcCCCCEEEEeChh
Confidence 234577777777765 77888888887666666654 12579999999876
No 73
>2x7j_A 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene -1-carboxylate synthase; transferase, metal-binding; HET: TPP; 2.35A {Bacillus subtilis}
Probab=91.40 E-value=0.5 Score=51.68 Aligned_cols=119 Identities=13% Similarity=0.069 Sum_probs=79.6
Q ss_pred CeeEeccCccchhhHHHHHHHHhhhcCCCcEEEEEcch-hhcccHHHHHHHHHhCCCeEEEEEeCCchhhhhhhcCCCCC
Q 007800 430 CGYEFQMQYGSIGWSVGATLGYAQAAKDKRVIACIGDG-SFQVTAQEISTMIRCGQRSIIFLINNGGYTIEVEIHDGPYN 508 (589)
Q Consensus 430 ~~~~~~~~~g~mG~~l~~aiGaala~~~~~vv~i~GDG-sf~~~~~el~ta~~~~l~v~ivv~nN~~~~~~~~~~~~~~~ 508 (589)
.+++....-. .+.-+|.|.+.+. +++.+|++-=| +..-....+.+|...++|+++|.-+-....+. .+.
T Consensus 70 i~~i~~~hE~---~Aa~aA~GyAr~t-gkpgv~~~TsGpG~~N~~~gia~A~~~~vPlv~ItG~~~~~~~g----~~~-- 139 (604)
T 2x7j_A 70 ISVHVQIDER---SAGFFALGLAKAK-QRPVLLICTSGTAAANFYPAVVEAHYSRVPIIVLTADRPHELRE----VGA-- 139 (604)
T ss_dssp CEEEECSSHH---HHHHHHHHHHHHH-TSCEEEEECSSHHHHTTHHHHHHHHHHTCCEEEEEEECCGGGSS----SCC--
T ss_pred ceEEEecChH---HHHHHHHHHHHhh-CCCEEEEECChhHHHHHHHHHHHHhhcCCCEEEEeCCCCHHHhC----CCC--
Confidence 3455443332 3445677887774 67888887666 45556899999999999999998876543221 111
Q ss_pred CCCCCChHHHHHHccCCCCCccEEEeCCHHH-------HHHHHHHhhh--c-CCCCeEEEEEEcCC
Q 007800 509 VIKNWDYTGLVNAIHNGEGKCWTAKVRSEDE-------LTEAMKTATG--E-QKDSLCFIEVFVHK 564 (589)
Q Consensus 509 ~~~~~d~~~la~a~G~~~~~~~~~~v~~~~~-------l~~al~~a~~--~-~~~gp~viev~~~~ 564 (589)
+...|...+.+.+-- +.+++.++++ +...+++|+. . ...||+.|+++.|-
T Consensus 140 -~Q~~d~~~~~~~~tk-----~~~~v~~~~~~~~~~~~~~~~i~~A~~~A~~~~~GPV~l~iP~d~ 199 (604)
T 2x7j_A 140 -PQAINQHFLFGNFVK-----FFTDSALPEESPQMLRYIRTLASRAAGEAQKRPMGPVHVNVPLRE 199 (604)
T ss_dssp -TTCCCCTTTTGGGSS-----CEEECCCCCCSHHHHHHHHHHHHHHHHHHHSSSCCEEEEEEECCS
T ss_pred -CCcCcHHHHhhhhee-----eeeecCCCcccchhHHHHHHHHHHHHHHhhCCCCCcEEEEcccCc
Confidence 134577777777765 6788887765 6666666654 2 25699999999884
No 74
>2nxw_A Phenyl-3-pyruvate decarboxylase; thiamine pyrophosphate, asymmetric dimer of dimers, open ACT loops, lyase; HET: TPP; 1.50A {Azospirillum brasilense} PDB: 2q5j_A* 2q5l_A* 2q5o_A* 2q5q_A*
Probab=91.31 E-value=0.74 Score=49.86 Aligned_cols=111 Identities=10% Similarity=0.025 Sum_probs=73.0
Q ss_pred hHHHHHHHHhhhcCCCcEEEEEcch-hhcccHHHHHHHHHhCCCeEEEEEeCCchhhhhhhcCCCC--CCCCCCC-hHHH
Q 007800 443 WSVGATLGYAQAAKDKRVIACIGDG-SFQVTAQEISTMIRCGQRSIIFLINNGGYTIEVEIHDGPY--NVIKNWD-YTGL 518 (589)
Q Consensus 443 ~~l~~aiGaala~~~~~vv~i~GDG-sf~~~~~el~ta~~~~l~v~ivv~nN~~~~~~~~~~~~~~--~~~~~~d-~~~l 518 (589)
.+.-+|.|.+.+. +++.+|++-=| +..-..+.+.+|...++|+++|.-+-...... .+.+ .....+| ...+
T Consensus 70 ~Aa~~A~GyAr~t-gkp~v~~~TsGpG~~N~~~gv~~A~~~~vPll~itg~~~~~~~~----~~~~~~~~~q~~d~q~~~ 144 (565)
T 2nxw_A 70 AVGFAADAAARYS-STLGVAAVTYGAGAFNMVNAVAGAYAEKSPVVVISGAPGTTEGN----AGLLLHHQGRTLDTQFQV 144 (565)
T ss_dssp HHHHHHHHHHHHH-TSCEEEEECTTHHHHTTHHHHHHHHHTTCCEEEEEEECCTTCC------CCCC-------CHHHHH
T ss_pred HHHHHHHHHHHHh-CCCeEEEECCCCCHHHHHHHHHHHHhhCCCEEEEeCCCChhhhc----cCcceeeeccchhhHHHH
Confidence 3445677887774 67888777655 45556899999999999999998875433221 1111 0112356 7778
Q ss_pred HHHccCCCCCccEEEeCCHHHHHHHHHHhhh--cCCCCeEEEEEEcC
Q 007800 519 VNAIHNGEGKCWTAKVRSEDELTEAMKTATG--EQKDSLCFIEVFVH 563 (589)
Q Consensus 519 a~a~G~~~~~~~~~~v~~~~~l~~al~~a~~--~~~~gp~viev~~~ 563 (589)
.+.+-- +..++.+++++...+++|+. ....||+.|+++.|
T Consensus 145 ~~~~~k-----~~~~v~~~~~~~~~i~~A~~~A~~~~GPV~l~iP~D 186 (565)
T 2nxw_A 145 FKEITV-----AQARLDDPAKAPAEIARVLGAARAQSRPVYLEIPRN 186 (565)
T ss_dssp HTTSCS-----CEEECCCTTTHHHHHHHHHHHHHHHTCCEEEEEEGG
T ss_pred HHhhhe-----EEEEeCCHHHHHHHHHHHHHHHHhCCCCEEEECChh
Confidence 877765 78888888777666666654 12469999999955
No 75
>3l84_A Transketolase; TKT, structural genomics, center for structur genomics of infectious diseases, csgid, transferase; HET: MSE; 1.36A {Campylobacter jejuni} PDB: 3m6l_A* 3m34_A* 3m7i_A*
Probab=91.22 E-value=0.86 Score=49.91 Aligned_cols=115 Identities=14% Similarity=0.040 Sum_probs=75.6
Q ss_pred EEecCchhHHHHhhhhhhhccCc-eEEEEeCCcchHHHHHHHHHhhhcCCcEEEEeCCCCccccCCccceeeecCCCChH
Q 007800 68 LVGCCNELNAGYAADGYARSRGV-GACVVTFTVGGLSVLNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFT 146 (589)
Q Consensus 68 ~v~~~hE~~A~~~A~gyar~tg~-~v~~~t~GpG~~n~~~~l~~A~~~~~PllvI~g~~~~~~~~~~~~~~~~~~~~~~~ 146 (589)
+-...-|++++.+|.|.|...|. .++.+ ..+=+.-+...+..+...+.||+++....... .+.+..-||.+
T Consensus 385 ~d~GIaE~~~v~~a~GlA~~gG~~P~~~~-f~~F~~~~~~~ir~~a~~~~pv~~~~t~~g~g-~G~dG~THq~~------ 456 (632)
T 3l84_A 385 IHFGIREHAMAAINNAFARYGIFLPFSAT-FFIFSEYLKPAARIAALMKIKHFFIFTHDSIG-VGEDGPTHQPI------ 456 (632)
T ss_dssp EECCSCHHHHHHHHHHHHHHSSCEEEEEE-EGGGHHHHHHHHHHHHHHTCCCEEEEECCSGG-GCTTCGGGSCS------
T ss_pred EEeCccHHHHHHHHHHHHHcCCCEEEEEe-cHHHHHHHHHHHHHHhccCCCEEEEEECCCcC-CCCCCCCCCCH------
Confidence 34467999999999999998666 55553 55556666777777777899999885322221 22222233322
Q ss_pred HHHHhhhcceeE-EEEeCChhhHHHHHHHHHHHhHhcCCcEEEEeCCCC
Q 007800 147 QELRCFQAITCS-QAVVNNLGDAHELIDTAISTALKESKPVYISISCNL 194 (589)
Q Consensus 147 ~~~~~~~~~tk~-~~~v~~~~~~~~~l~~A~~~a~~~~gPV~i~iP~dv 194 (589)
....+++.+--. ...+.++.++..+++.|++ .++||+|.+|+.-
T Consensus 457 ed~a~lr~iP~l~V~~P~d~~e~~~~l~~A~~----~~~Pv~ir~~r~~ 501 (632)
T 3l84_A 457 EQLSTFRAMPNFLTFRPADGVENVKAWQIALN----ADIPSAFVLSRQK 501 (632)
T ss_dssp SHHHHHHHSSSCEEECCSSHHHHHHHHHHHHH----CSSCEEEECCSSC
T ss_pred hHHHHHhcCCCCEEEecCCHHHHHHHHHHHHh----CCCCEEEEEcCCC
Confidence 236677776543 3455677777777776665 5799999998653
No 76
>2pgn_A Cyclohexane-1,2-dione hydrolase (CDH); three alpha/beta domains; HET: P6G FAD TPP; 1.20A {Azoarcus SP} PDB: 2pgo_A*
Probab=91.19 E-value=0.98 Score=49.19 Aligned_cols=108 Identities=12% Similarity=0.104 Sum_probs=73.5
Q ss_pred hHHHHHHHHhhhcCCCcEEEEEcch-hhcccHHHHHHHHHhCCCeEEEEEeCCchhhhhhhcCCCCCCCCCCChHHHHHH
Q 007800 443 WSVGATLGYAQAAKDKRVIACIGDG-SFQVTAQEISTMIRCGQRSIIFLINNGGYTIEVEIHDGPYNVIKNWDYTGLVNA 521 (589)
Q Consensus 443 ~~l~~aiGaala~~~~~vv~i~GDG-sf~~~~~el~ta~~~~l~v~ivv~nN~~~~~~~~~~~~~~~~~~~~d~~~la~a 521 (589)
.+.-+|.|.+.+. +++.+|++-=| +..-....+.+|...++|+++|.-+-...... .+. ....+|... .+.
T Consensus 54 ~Aa~~A~GyAr~t-g~p~v~~~TsGpG~~N~~~gv~~A~~~~vPll~itg~~~~~~~~----~~~--~~Q~~d~~~-~~~ 125 (589)
T 2pgn_A 54 GGAWMVNGYNYVK-DRSAAVGAWHCVGNLLLHAAMQEARTGRIPAVHIGLNSDGRLAG----RSE--AAQQVPWQS-FTP 125 (589)
T ss_dssp HHHHHHHHHHHHH-TSCCEEEEEEGGGGGGCHHHHHHHHHTTCCEEEEEEESCGGGTT----CTT--CSSCCCGGG-GTT
T ss_pred HHHHHHHHHHHHH-CCCEEEEEecCchHHHHHHHHHHHHhcCCCEEEEecCCcccccC----CCC--cccccChhh-ccc
Confidence 4455677887764 56766666555 44556999999999999999998876654331 110 123346554 444
Q ss_pred ccCCCCCccEEEeCCHHHHHHHHHHhhh--c-CCCCeEEEEEEcC
Q 007800 522 IHNGEGKCWTAKVRSEDELTEAMKTATG--E-QKDSLCFIEVFVH 563 (589)
Q Consensus 522 ~G~~~~~~~~~~v~~~~~l~~al~~a~~--~-~~~gp~viev~~~ 563 (589)
+-- +..++.+++++...+++|+. . ...||+.|++..|
T Consensus 126 ~tk-----~~~~v~~~~~~~~~i~~A~~~A~~~~~GPV~l~iP~d 165 (589)
T 2pgn_A 126 IAR-----STQRVERLDKVGEAIHEAFRVAEGHPAGPAYVDIPFD 165 (589)
T ss_dssp TSS-----EEEECCSGGGHHHHHHHHHHHHTSSSCCEEEEEEETH
T ss_pred cEE-----EEeecCCHHHHHHHHHHHHHHHhcCCCccEEEEeCHh
Confidence 443 67888999888887777775 2 2348999999876
No 77
>1q6z_A BFD, BFDC, benzoylformate decarboxylase; lyase, carbon-carbon, mandelate catabolism, T thiazolone diphosphate, inhibitor, high resolution; HET: TZD; 1.00A {Pseudomonas putida} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1po7_A* 1pi3_A* 3fsj_X* 1mcz_A* 1bfd_A* 2fwn_A* 3fzn_A* 2fn3_A* 2v3w_A* 1yno_A* 3f6b_X* 3f6e_X*
Probab=91.18 E-value=0.47 Score=50.99 Aligned_cols=120 Identities=18% Similarity=0.178 Sum_probs=81.4
Q ss_pred CCeeEeccCccchhhHHHHHHHHhhhcCCCcEEEEEcch-hhcccHHHHHHHHHhCCCeEEEEEeCCchhhhhhhcCCCC
Q 007800 429 NCGYEFQMQYGSIGWSVGATLGYAQAAKDKRVIACIGDG-SFQVTAQEISTMIRCGQRSIIFLINNGGYTIEVEIHDGPY 507 (589)
Q Consensus 429 ~~~~~~~~~~g~mG~~l~~aiGaala~~~~~vv~i~GDG-sf~~~~~el~ta~~~~l~v~ivv~nN~~~~~~~~~~~~~~ 507 (589)
..+++....-. .+.-+|.|.+.+. +++.+|++-=| +..-..+.+.+|...++|+++|.-+-....+. .+.+
T Consensus 38 ~i~~i~~~~E~---~Aa~~A~Gyar~t-g~~~v~~~tsGpG~~N~~~~l~~A~~~~~Pll~itg~~~~~~~~----~~~~ 109 (528)
T 1q6z_A 38 DFRYILALQEA---CVVGIADGYAQAS-RKPAFINLHSAAGTGNAMGALSNAWNSHSPLIVTAGQQTRAMIG----VEAL 109 (528)
T ss_dssp TCEEEECSSHH---HHHHHHHHHHHHH-TSCEEEEEEHHHHHHHTHHHHHHHHHTTCCEEEEEEECCHHHHT----TTCT
T ss_pred cCcEEEECcHH---HHHHHHHHHHHHh-CCCEEEEEcCChHHHHHHHHHHHHhhcCCCEEEEeCCCcccccC----CCcc
Confidence 34566554433 4556788888874 67877766554 44556899999999999999998876654331 1111
Q ss_pred CCCCC-CChHHHHHHccCCCCCccEEEeCCHHHHHHHHHHhhh---cCCCCeEEEEEEcCC
Q 007800 508 NVIKN-WDYTGLVNAIHNGEGKCWTAKVRSEDELTEAMKTATG---EQKDSLCFIEVFVHK 564 (589)
Q Consensus 508 ~~~~~-~d~~~la~a~G~~~~~~~~~~v~~~~~l~~al~~a~~---~~~~gp~viev~~~~ 564 (589)
.. +|+..+.+.+-- +..++.+++++...+++|+. ....||+.|++..|-
T Consensus 110 ---q~~~d~~~~~~~~~k-----~~~~v~~~~~~~~~i~~A~~~a~~~~~GPV~l~iP~d~ 162 (528)
T 1q6z_A 110 ---LTNVDAANLPRPLVK-----WSYEPASAAEVPHAMSRAIHMASMAPQGPVYLSVPYDD 162 (528)
T ss_dssp ---TCCTTGGGSSTTSCS-----CEECCSSGGGHHHHHHHHHHHHHSSSCCCEEEEEEGGG
T ss_pred ---cccccHHHHHHHhhH-----hhhcCCCHHHHHHHHHHHHHHHhcCCCCcEEEEechhh
Confidence 22 477777666654 67788888887777777764 235689999999874
No 78
>3hww_A 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene- carboxylate synthase; menaquinone, THDP, Mg, vitamin K2, carboxylase, magnesium; HET: AKG; 1.95A {Escherichia coli k-12} PDB: 3flm_A* 3hwx_A* 2jlc_A* 2jla_A*
Probab=90.51 E-value=0.61 Score=50.42 Aligned_cols=108 Identities=13% Similarity=0.106 Sum_probs=75.6
Q ss_pred hHHHHHHHHhhhcCCCcEEEEEcch-hhcccHHHHHHHHHhCCCeEEEEEeCCchhhhhhhcCCCCCCCCCCChHHHHHH
Q 007800 443 WSVGATLGYAQAAKDKRVIACIGDG-SFQVTAQEISTMIRCGQRSIIFLINNGGYTIEVEIHDGPYNVIKNWDYTGLVNA 521 (589)
Q Consensus 443 ~~l~~aiGaala~~~~~vv~i~GDG-sf~~~~~el~ta~~~~l~v~ivv~nN~~~~~~~~~~~~~~~~~~~~d~~~la~a 521 (589)
.+.-+|.|.+.+. +++.+|++-=| +..-....+.+|...++|+++|.-+-....+. .+. +..+|...+.+.
T Consensus 57 ~Aa~~AdGyAr~t-G~pgv~~~TsGpG~~N~~~gia~A~~d~vPll~itG~~~~~~~g----~~~---~Q~~d~~~~~~~ 128 (556)
T 3hww_A 57 GLGHLALGLAKVS-KQPVAVIVTSGTAVANLYPALIEAGLTGEKLILLTADRPPELID----CGA---NQAIRQPGMFAS 128 (556)
T ss_dssp HHHHHHHHHHHHH-CSCEEEEECSSHHHHTTHHHHHHHHHHCCCEEEEEEECCGGGSS----SSC---TTCCCCTTTTTT
T ss_pred HHHHHHHHHHHhh-CCCEEEEECCCcHHHhhhHHHHHHHHhCCCeEEEeCCCCHHHhc----cCC---CccccHHHHHhh
Confidence 3445677887764 67888887666 55556899999999999999988766543321 111 234566666666
Q ss_pred ccCCCCCccEEEeCCHH------HHHHHHHHhhhcCCCCeEEEEEEcC
Q 007800 522 IHNGEGKCWTAKVRSED------ELTEAMKTATGEQKDSLCFIEVFVH 563 (589)
Q Consensus 522 ~G~~~~~~~~~~v~~~~------~l~~al~~a~~~~~~gp~viev~~~ 563 (589)
+-- +.+.+.+++ ++..++++|+.....||+.|+++.|
T Consensus 129 ~tk-----~~~~v~~~~~~~~~~~i~~~i~~A~~~~r~GPV~i~iP~d 171 (556)
T 3hww_A 129 HPT-----HSISLPRPTQDIPARWLVSTIDHALGTLHAGGVHINCPFA 171 (556)
T ss_dssp CSS-----EEEECCCCCTTSCHHHHHHHHHHHHHSCCSSCEEEEEECC
T ss_pred hee-----EEEecCCCcccccHHHHHHHHHHHHhcCCCCCEEEeCCcC
Confidence 654 667777664 4888999998522468999999986
No 79
>1itz_A Transketolase; calvin cycle, cofactor, thiamine pyrophosphate, plant, transferase; HET: TPP; 2.30A {Zea mays} SCOP: c.36.1.6 c.36.1.10 c.48.1.1
Probab=90.25 E-value=0.89 Score=50.30 Aligned_cols=116 Identities=18% Similarity=0.183 Sum_probs=74.7
Q ss_pred eEEe-cCchhHHHHhhhhhhhcc-Cc-eEEEEeCCcchHHHHHHHHHhhhcCCcEEEEeCCCCccccCCccceeeecCCC
Q 007800 67 NLVG-CCNELNAGYAADGYARSR-GV-GACVVTFTVGGLSVLNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLP 143 (589)
Q Consensus 67 ~~v~-~~hE~~A~~~A~gyar~t-g~-~v~~~t~GpG~~n~~~~l~~A~~~~~PllvI~g~~~~~~~~~~~~~~~~~~~~ 143 (589)
+++. ...|++++.+|.|+|... |. .++. +..+...-+..++..+-..+.|++++....... .+.+..-||.
T Consensus 415 R~id~gIaE~~~v~~a~GlA~~G~~~~P~~~-t~~~F~~~~~~~ir~~a~~~lpvv~~~t~~g~g-~G~dG~tHq~---- 488 (675)
T 1itz_A 415 RNVRFGVREHGMGAICNGIALHSPGFVPYCA-TFFVFTDYMRGAMRISALSEAGVIYVMTHDSIG-LGEDGPTHQP---- 488 (675)
T ss_dssp CBCCCCSCHHHHHHHHHHHHTTCTTCEEEEE-EEGGGHHHHHHHHHHHHHHTCCCEEEEECCSGG-GCTTCTTTCC----
T ss_pred CeEeecccHHHHHHHHHHHHhcCCCCEEEEE-EHHHHHHHHHHHHHHHHhcCCCEEEEEECCccc-cCCCCCCcCc----
Confidence 4555 559999999999999876 35 5555 467777777788888888999998886321111 2211112322
Q ss_pred ChHHHHHhhhccee-EEEEeCChhhHHHHHHHHHHHhHhcCCcEEEEeCCC
Q 007800 144 DFTQELRCFQAITC-SQAVVNNLGDAHELIDTAISTALKESKPVYISISCN 193 (589)
Q Consensus 144 ~~~~~~~~~~~~tk-~~~~v~~~~~~~~~l~~A~~~a~~~~gPV~i~iP~d 193 (589)
..+..+++.+-. ....+.++.++..+++.|++.. .+||+|.+|..
T Consensus 489 --~edla~lr~iP~l~V~~Pad~~e~~~~l~~a~~~~---~~Pv~i~~~r~ 534 (675)
T 1itz_A 489 --IEHLVSFRAMPNILMLRPADGNETAGAYKVAVLNR---KRPSILALSRQ 534 (675)
T ss_dssp --SSHHHHHHSSSSCEEECCCSHHHHHHHHHHHHHCT---TSCEEEEECSS
T ss_pred --HHHHHHhccCCCeEEEECCCHHHHHHHHHHHHHhC---CCcEEEEecCC
Confidence 234566665443 2445567777766666655422 69999999964
No 80
>3kom_A Transketolase; rossmann fold, csgid, transferase, structural genomics, center for structural genomics of infectious DISE; HET: MSE; 1.60A {Francisella tularensis subsp}
Probab=90.23 E-value=1.4 Score=48.46 Aligned_cols=114 Identities=17% Similarity=0.144 Sum_probs=73.4
Q ss_pred eEEec-CchhHHHHhhhhhhhccCc-eEEEEeCCcchHHHHHHHHHhhhcCCcEEEEe-CCCCccccCCccceeeecCCC
Q 007800 67 NLVGC-CNELNAGYAADGYARSRGV-GACVVTFTVGGLSVLNAIAGAYSENLPVICIV-GGPNSNDYGTNRILHHTIGLP 143 (589)
Q Consensus 67 ~~v~~-~hE~~A~~~A~gyar~tg~-~v~~~t~GpG~~n~~~~l~~A~~~~~PllvI~-g~~~~~~~~~~~~~~~~~~~~ 143 (589)
+++.+ .-|++++.+|.|+|...|. .++. |..+-+.-+...+..+-..+.|++++. .+... .+.+..-||.+
T Consensus 404 R~~d~GIaE~~~v~~a~GlA~~gG~~P~~~-tf~~F~~~~~~~ir~~a~~~lpvv~~~t~~g~g--~G~dG~THq~~--- 477 (663)
T 3kom_A 404 NYLSYGVREFGMAAIMNGLSLYGGIKPYGG-TFLVFSDYSRNAIRMSALMKQPVVHVMSHDSIG--LGEDGPTHQPI--- 477 (663)
T ss_dssp CEEECCSCHHHHHHHHHHHHHHSSCEEEEE-EEGGGHHHHHHHHHHHHHTTCCCEEEEECCSGG--GCTTCTTTCCS---
T ss_pred CeEecCccHHHHHHHHHHHHHcCCCEEEEE-ehHHHHHHHHHHHHHHHhcCCCEEEEEeCCccc--cCCCCCCcCCH---
Confidence 66665 8999999999999988676 5555 467777667777877778899999985 33221 22211223222
Q ss_pred ChHHHHHhhhcceeE-EEEeCChhhHHHHHHHHHHHhHh-cCCcEEEEeCCC
Q 007800 144 DFTQELRCFQAITCS-QAVVNNLGDAHELIDTAISTALK-ESKPVYISISCN 193 (589)
Q Consensus 144 ~~~~~~~~~~~~tk~-~~~v~~~~~~~~~l~~A~~~a~~-~~gPV~i~iP~d 193 (589)
.+..+++.+.-. ...+.++.++..+ ++.|.. .++||+|.+|..
T Consensus 478 ---ed~a~lr~iPnl~V~~Pad~~e~~~~----l~~A~~~~~~Pv~ir~~r~ 522 (663)
T 3kom_A 478 ---EHVPSLRLIPNLSVWRPADTIETMIA----WKEAVKSKDTPSVMVLTRQ 522 (663)
T ss_dssp ---SHHHHHHTSTTCEEECCCSHHHHHHH----HHHHHHCSSCCEEEECCSS
T ss_pred ---HHHHHHhcCCCcEEEeeCCHHHHHHH----HHHHHHhCCCCEEEEccCc
Confidence 235666666543 3344555555544 445555 479999998853
No 81
>1d4o_A NADP(H) transhydrogenase; nucleotide-binding fold, protein-NADP(H) complex, inverted binding of NADP(H), oxidoreductase; HET: NAP; 1.21A {Bos taurus} SCOP: c.31.1.4
Probab=90.22 E-value=0.11 Score=45.76 Aligned_cols=88 Identities=17% Similarity=0.225 Sum_probs=53.0
Q ss_pred HHHHHHHHHhcCCCEEEeCcccchhhHHHHHHHHHHHh---CCceEEccCC-ccCCCCCCCCce---e-eecCCCCCHHH
Q 007800 225 VEATADFLNKAVKPVLVGGPNIRVAKAQKAFIELADAT---GYPIAIMPSG-KGLVPEHHPHFI---G-TYWGAVSSSFC 296 (589)
Q Consensus 225 i~~~~~~L~~a~rpviv~G~g~~~~~~~~~l~~lae~~---~~Pv~tt~~~-~g~~~~~~pl~~---G-~~~g~~~~~~~ 296 (589)
.++++.+|..|++.+|+-|+|..-+.+.-.+.+|++.| |+-|=--..- .|-+|..--..+ + .|.-.+--+..
T Consensus 12 ~~~~a~~l~~A~~ViIvPGYGmAvAqAQ~~v~el~~~L~~~G~~V~faIHPVAGRMPGhMNVLLAEA~VPYd~v~EMdeI 91 (184)
T 1d4o_A 12 LDNAIDMIREANSIIITPGYGLCAAKAQYPIADLVKMLSEQGKKVRFGIHPVAGRMPGQLNVLLAEAGVPYDIVLEMDEI 91 (184)
T ss_dssp HHHHHHHHHHCSEEEEEECHHHHHTTTHHHHHHHHHHHHHTTCEEEEEECTTCSSSTTHHHHHHHHHTCCGGGEEEHHHH
T ss_pred HHHHHHHHHhCCeEEEECChHHHHHHHHHHHHHHHHHHHHCCCeEEEEeccccccCCCcceEEEEEecCCHHHHHhHHHH
Confidence 46788999999999999999999888777777766655 5544322210 122222000000 0 00001112356
Q ss_pred HHHhhhcCEEEEeCCC
Q 007800 297 GEIVESADAYVFVGPI 312 (589)
Q Consensus 297 ~~~l~~aD~vl~lG~~ 312 (589)
|.-+.+.|++|++|+.
T Consensus 92 N~df~~tDv~lVIGAN 107 (184)
T 1d4o_A 92 NHDFPDTDLVLVIGAN 107 (184)
T ss_dssp GGGGGGCSEEEEESCS
T ss_pred hhhhhhcCEEEEecCC
Confidence 6667899999999975
No 82
>1pno_A NAD(P) transhydrogenase subunit beta; nucleotide binding fold, oxidoreductase; HET: NAP; 2.10A {Rhodospirillum rubrum} SCOP: c.31.1.4 PDB: 1pnq_A* 1xlt_C* 2oor_C* 1ptj_C* 2oo5_C*
Probab=90.21 E-value=0.1 Score=45.78 Aligned_cols=89 Identities=25% Similarity=0.319 Sum_probs=53.4
Q ss_pred HHHHHHHHHHhcCCCEEEeCcccchhhHHHHHHHHHHHh---CCceEEccCC-ccCCCCCCCCce---e-eecCCCCCHH
Q 007800 224 AVEATADFLNKAVKPVLVGGPNIRVAKAQKAFIELADAT---GYPIAIMPSG-KGLVPEHHPHFI---G-TYWGAVSSSF 295 (589)
Q Consensus 224 ~i~~~~~~L~~a~rpviv~G~g~~~~~~~~~l~~lae~~---~~Pv~tt~~~-~g~~~~~~pl~~---G-~~~g~~~~~~ 295 (589)
..++++.+|..|++.+|+-|+|..-+.+.-.+.+|++.| |+-|=--..- .|-+|..--..+ + .|.-.+--+.
T Consensus 12 ~~~~~a~~l~~A~~ViIvPGYGmAvAqAQ~~v~el~~~L~~~G~~V~faIHPVAGRMPGhmNVLLAEA~VPYd~v~EMde 91 (180)
T 1pno_A 12 SAEDAAFIMKNASKVIIVPGYGMAVAQAQHALREMADVLKKEGVEVSYAIHPVAGRMPGHMNVLLAEANVPYDEVFELEE 91 (180)
T ss_dssp CHHHHHHHHHTCSEEEEEECHHHHHHTCHHHHHHHHHHHHHTTCEEEEEECTTCTTSTTHHHHHHHHTTCCGGGEEEHHH
T ss_pred CHHHHHHHHHhCCeEEEECChHHHHHHHHHHHHHHHHHHHHCCCeEEEEeccccccCCCcceEEEEeeCCCHHHHhhHHH
Confidence 346788999999999999999999887777777766655 5544322210 122222000000 0 0000111235
Q ss_pred HHHHhhhcCEEEEeCCC
Q 007800 296 CGEIVESADAYVFVGPI 312 (589)
Q Consensus 296 ~~~~l~~aD~vl~lG~~ 312 (589)
.|.-+.+.|++|++|+.
T Consensus 92 IN~df~~tDv~lVIGAN 108 (180)
T 1pno_A 92 INSSFQTADVAFVIGAN 108 (180)
T ss_dssp HGGGGGGCSEEEEESCC
T ss_pred HhhhhhhcCEEEEeccc
Confidence 66667899999999964
No 83
>2vbi_A Pyruvate decarboxylase; thiamine pyrophosphate, lyase, pyruv flavoprotein, THDP-dependent enzyme; HET: TPP; 2.75A {Acetobacter pasteurianus}
Probab=89.89 E-value=0.97 Score=48.94 Aligned_cols=123 Identities=5% Similarity=-0.046 Sum_probs=79.1
Q ss_pred CeeEeccCccchhhHHHHHHHHhhhcCCCcEEEEEcch-hhcccHHHHHHHHHhCCCeEEEEEeCCchhhhhhhcCCCCC
Q 007800 430 CGYEFQMQYGSIGWSVGATLGYAQAAKDKRVIACIGDG-SFQVTAQEISTMIRCGQRSIIFLINNGGYTIEVEIHDGPYN 508 (589)
Q Consensus 430 ~~~~~~~~~g~mG~~l~~aiGaala~~~~~vv~i~GDG-sf~~~~~el~ta~~~~l~v~ivv~nN~~~~~~~~~~~~~~~ 508 (589)
.+++....-. .+.-+|.|.+.+. + +.+|++-=| +..-..+.+.+|...++|+++|.-+-........ .....
T Consensus 42 i~~v~~~~E~---~Aa~~A~Gyar~t-g-~~v~~~TsGpG~~N~~~gia~A~~~~vPll~itg~~~~~~~~~~--~~~~~ 114 (566)
T 2vbi_A 42 MKQIYCCNEL---NCGFSAEGYARSN-G-AAAAVVTFSVGAISAMNALGGAYAENLPVILISGAPNSNDQGTG--HILHH 114 (566)
T ss_dssp SEEEECSSHH---HHHHHHHHHHHHH-S-CEEEEECTTTTHHHHHHHHHHHHHTTCCEEEEEEECCGGGTTTT--CBCTT
T ss_pred CeEEeeCcHH---HHHHHHHHHHhhc-C-CeEEEEeCCCCHHHHHHHHHHHHhhCCCEEEEECCCChHHhccC--ceeee
Confidence 4455544433 4556788888775 4 777776545 3444589999999999999999887765433110 00001
Q ss_pred CC--CC-CChHHHHHHccCCCCCccEEEeCCHHHHHHHHHHhhh--cCCCCeEEEEEEcCC
Q 007800 509 VI--KN-WDYTGLVNAIHNGEGKCWTAKVRSEDELTEAMKTATG--EQKDSLCFIEVFVHK 564 (589)
Q Consensus 509 ~~--~~-~d~~~la~a~G~~~~~~~~~~v~~~~~l~~al~~a~~--~~~~gp~viev~~~~ 564 (589)
.+ .. .|...+.+.+-- +..++.+++++...+++|+. ....||+.|++..|-
T Consensus 115 ~~g~~~~~d~~~~~~~~tk-----~~~~v~~~~~~~~~l~~A~~~a~~~~GPV~l~iP~d~ 170 (566)
T 2vbi_A 115 TIGKTDYSYQLEMARQVTC-----AAESITDAHSAPAKIDHVIRTALRERKPAYLDIACNI 170 (566)
T ss_dssp SCSSSCCTHHHHHHHTTCS-----EEEEECSSSSHHHHHHHHHHHHHHHTCCEEEEEETTT
T ss_pred eccCcchHHHHHHHhhhEe-----EEEEeCCHHHHHHHHHHHHHHHHhCCCCEEEEechhh
Confidence 11 11 367888888865 78888888776665655553 124599999999874
No 84
>1r9j_A Transketolase; domains, EACH of the alpha/beta type, thiamine diphosphate binding domain, transferase; HET: TPP; 2.22A {Leishmania mexicana mexicana} SCOP: c.36.1.6 c.36.1.10 c.48.1.1
Probab=89.85 E-value=0.79 Score=50.70 Aligned_cols=116 Identities=15% Similarity=0.087 Sum_probs=75.4
Q ss_pred CeEEe-cCchhHHHHhhhhhhhccCc-eEEEEeCCcchHHHHHHHHHhhhcCCcEEEEeC-CCCccccCCccceeeecCC
Q 007800 66 LNLVG-CCNELNAGYAADGYARSRGV-GACVVTFTVGGLSVLNAIAGAYSENLPVICIVG-GPNSNDYGTNRILHHTIGL 142 (589)
Q Consensus 66 i~~v~-~~hE~~A~~~A~gyar~tg~-~v~~~t~GpG~~n~~~~l~~A~~~~~PllvI~g-~~~~~~~~~~~~~~~~~~~ 142 (589)
=+++. ...|++++.+|.|+|...|. .++. +..+-..-+..+|..+-..+.|++++.. +... .+.+..-||.
T Consensus 402 ~R~id~GIaE~~~~~~a~GlA~~GG~~P~~~-~~~~F~~~~~~~ir~~a~~~~pvv~~~t~~g~g--~G~dG~tHq~--- 475 (673)
T 1r9j_A 402 GRYIRFGVREHAMCAILNGLDAHDGIIPFGG-TFLNFIGYALGAVRLAAISHHRVIYVATHDSIG--VGEDGPTHQP--- 475 (673)
T ss_dssp CCEEECCSCHHHHHHHHHHHHHHSSCEEEEE-EEGGGGGGGHHHHHHHHHHTCCCEEEEECCSGG--GCTTCTTTCC---
T ss_pred CCeEecCccHHHHHHHHHHHHhcCCCEEEEE-ehHHHHHHHHHHHHHHHhcCCCEEEEEECCccC--cCCCCcccCC---
Confidence 35555 68999999999999988665 5555 4566556667788888888999888853 2222 2222122322
Q ss_pred CChHHHHHhhhccee-EEEEeCChhhHHHHHHHHHHHhHhcCCcEEEEeCCC
Q 007800 143 PDFTQELRCFQAITC-SQAVVNNLGDAHELIDTAISTALKESKPVYISISCN 193 (589)
Q Consensus 143 ~~~~~~~~~~~~~tk-~~~~v~~~~~~~~~l~~A~~~a~~~~gPV~i~iP~d 193 (589)
..++.+++.+-. ....+.++.++..+++.|++.. .+||+|.+|..
T Consensus 476 ---~edla~lr~iP~l~V~~Pad~~e~~~~l~~a~~~~---~~Pv~i~~~r~ 521 (673)
T 1r9j_A 476 ---VELVAALRAMPNLQVIRPSDQTETSGAWAVALSSI---HTPTVLCLSRQ 521 (673)
T ss_dssp ---SSHHHHHHHSTTCEEECCSSHHHHHHHHHHHHHCT---TCCEEEECCSS
T ss_pred ---HHHHHHHcCCCCCEEEeCCCHHHHHHHHHHHHHhC---CCeEEEEEcCC
Confidence 234566665433 3445667777776666666532 69999998864
No 85
>1djl_A Transhydrogenase DIII; rossmann fold dinucleotide binding fold reverse binding of N oxidoreductase; HET: NAP; 2.00A {Homo sapiens} SCOP: c.31.1.4 PDB: 1pt9_A* 1u31_A*
Probab=89.63 E-value=0.12 Score=46.56 Aligned_cols=88 Identities=17% Similarity=0.225 Sum_probs=53.0
Q ss_pred HHHHHHHHHhcCCCEEEeCcccchhhHHHHHHHHHHHh---CCceEEccCC-ccCCCCCCCCce---e-eecCCCCCHHH
Q 007800 225 VEATADFLNKAVKPVLVGGPNIRVAKAQKAFIELADAT---GYPIAIMPSG-KGLVPEHHPHFI---G-TYWGAVSSSFC 296 (589)
Q Consensus 225 i~~~~~~L~~a~rpviv~G~g~~~~~~~~~l~~lae~~---~~Pv~tt~~~-~g~~~~~~pl~~---G-~~~g~~~~~~~ 296 (589)
.++++.+|..|++.+|+-|+|..-+.+.-.+.+|++.| |+-|---..- .|-.|.+---.+ + .|.-.+--+..
T Consensus 35 ~~~~a~~l~~A~~ViIVPGYGmAVAqAQ~~v~el~~~L~~~G~~V~faIHPVAGRMPGhMNVLLAEA~VPYd~v~EMdeI 114 (207)
T 1djl_A 35 LDNAIDMIREANSIIITPGYGLCAAKAQYPIADLVKMLTEQGKKVRFGIHPVAGRMPGQLNVLLAEAGVPYDIVLEMDEI 114 (207)
T ss_dssp HHHHHHHHHHCSEEEEEECHHHHHHTCHHHHHHHHHHHHHTTCEEEEEECTTCSSSTTHHHHHHHHTTCCGGGEEEHHHH
T ss_pred HHHHHHHHHhCCeEEEECCchHHHHHHhHHHHHHHHHHHHCCCeEEEEeCccCCCCCCCCcEEEEEeCCCHHHHhhHHHH
Confidence 35788999999999999999999888777777766655 5544332210 122222000000 0 00001112356
Q ss_pred HHHhhhcCEEEEeCCC
Q 007800 297 GEIVESADAYVFVGPI 312 (589)
Q Consensus 297 ~~~l~~aD~vl~lG~~ 312 (589)
|.-+.+.|++|++|+.
T Consensus 115 N~df~~tDv~lVIGAN 130 (207)
T 1djl_A 115 NHDFPDTDLVLVIGAN 130 (207)
T ss_dssp GGGGGGCSEEEEESCC
T ss_pred hhhhhhcCEEEEeccc
Confidence 6667899999999975
No 86
>2fsv_C NAD(P) transhydrogenase subunit beta; NAD(P) transhydrogenase subunits, oxidoreductas; HET: NAD NAP; 2.30A {Rhodospirillum rubrum} SCOP: c.31.1.4 PDB: 1e3t_A* 1hzz_C* 1nm5_C* 1u28_C* 1u2d_C* 1u2g_C* 2fr8_C* 2frd_C*
Probab=89.31 E-value=0.18 Score=45.22 Aligned_cols=88 Identities=25% Similarity=0.318 Sum_probs=52.4
Q ss_pred HHHHHHHHHhcCCCEEEeCcccchhhHHHHHHHHHHHh---CCceEEccCC-ccCCCCCCCCce---e-eecCCCCCHHH
Q 007800 225 VEATADFLNKAVKPVLVGGPNIRVAKAQKAFIELADAT---GYPIAIMPSG-KGLVPEHHPHFI---G-TYWGAVSSSFC 296 (589)
Q Consensus 225 i~~~~~~L~~a~rpviv~G~g~~~~~~~~~l~~lae~~---~~Pv~tt~~~-~g~~~~~~pl~~---G-~~~g~~~~~~~ 296 (589)
.++++.+|..|++.+|+-|+|..-+.+.-.+.+|++.| |+-|=--..- .|-.|.+---.+ + .|.-.+--+..
T Consensus 36 ~~~~a~~l~~A~~ViIVPGYGmAVAqAQ~~v~el~~~L~~~G~~V~faIHPVAGRMPGhMNVLLAEA~VPYd~v~EMdeI 115 (203)
T 2fsv_C 36 AEDAAFIMKNASKVIIVPGYGMAVAQAQHALREMADVLKKEGVEVSYAIHPVAGRMPGHMNVLLAEANVPYDEVFELEEI 115 (203)
T ss_dssp HHHHHHHHHHCSEEEEEECHHHHHHTCHHHHHHHHHHHHHTTCEEEEEECTTCSSSTTHHHHHHHHTTCCGGGEEEHHHH
T ss_pred HHHHHHHHHhCCcEEEEcCchHhHHHHHHHHHHHHHHHHHcCCeEEEEecccccCCCCCccEEEEEecCCHHHHhhHHHH
Confidence 46788999999999999999999888777777766655 5544322210 111222000000 0 00001111355
Q ss_pred HHHhhhcCEEEEeCCC
Q 007800 297 GEIVESADAYVFVGPI 312 (589)
Q Consensus 297 ~~~l~~aD~vl~lG~~ 312 (589)
|.-+.+.|++|++|+.
T Consensus 116 N~df~~tDv~lVIGAN 131 (203)
T 2fsv_C 116 NSSFQTADVAFVIGAN 131 (203)
T ss_dssp GGGSTTCSEEEEESCC
T ss_pred hhhhhhcCEEEEeccc
Confidence 6667799999999964
No 87
>2bru_C NAD(P) transhydrogenase subunit beta; paramagnetic transhydrogenase, inner membrane, membrane, oxidoreductase, transmembrane; HET: NAD NAP; NMR {Escherichia coli}
Probab=89.25 E-value=0.1 Score=45.88 Aligned_cols=90 Identities=19% Similarity=0.264 Sum_probs=53.3
Q ss_pred HHHHHHHHHHHhcCCCEEEeCcccchhhHHHHHHHHHHHh---CCceEEccCC-ccCCCCCCCCce---ee-ecCCCCCH
Q 007800 223 AAVEATADFLNKAVKPVLVGGPNIRVAKAQKAFIELADAT---GYPIAIMPSG-KGLVPEHHPHFI---GT-YWGAVSSS 294 (589)
Q Consensus 223 ~~i~~~~~~L~~a~rpviv~G~g~~~~~~~~~l~~lae~~---~~Pv~tt~~~-~g~~~~~~pl~~---G~-~~g~~~~~ 294 (589)
...++++.+|..|++.+|+-|+|..-+.+.-.+.+|++.| |+-|---..- .|-+|..--..+ ++ |.-.+--+
T Consensus 18 ~~~~~~a~~l~~A~~ViIVPGYGmAVAqAQ~~v~el~~~L~~~G~~V~faIHPVAGRMPGhMNVLLAEA~VPYd~v~EMd 97 (186)
T 2bru_C 18 ITAEETAELLKNSHSVIITPGYGMAVAQAQYPVAEITEKLRARGINVRFGIHPVAGRLPGHMNVLLAEAKVPYDIVLEMD 97 (186)
T ss_dssp --CHHHHHHHHHCSEEEEECSBHHHHTTTHHHHHHHHHHHHHHCCEEEEEECSSSSSSSSTHHHHHHHHTCCTTTEEESC
T ss_pred cCHHHHHHHHHhCCeEEEECChHHHHHHHHHHHHHHHHHHHHCCCeEEEEeccccccCCCcceEEEEecCCCHHHHhhHH
Confidence 3457889999999999999999998887776666666654 5544332210 122332100000 00 00001112
Q ss_pred HHHHHhhhcCEEEEeCCC
Q 007800 295 FCGEIVESADAYVFVGPI 312 (589)
Q Consensus 295 ~~~~~l~~aD~vl~lG~~ 312 (589)
..|.-+.+.|++|++|+.
T Consensus 98 eIN~df~~tDv~lVIGAN 115 (186)
T 2bru_C 98 EINDDFADTDTVLVIGAN 115 (186)
T ss_dssp CCHHHHHHCSEEEECBCG
T ss_pred HHhcccccCCEEEEeccc
Confidence 466778899999999964
No 88
>2vk8_A Pyruvate decarboxylase isozyme 1; asymmetric active sites, phenylalanine catabolism, tryptophan catabolism, thiamine pyrophosphate; HET: TPP; 1.42A {Saccharomyces cerevisiae} PDB: 1qpb_A* 2vk1_A* 2w93_A* 1pyd_A* 1pvd_A* 2vk4_A* 2vjy_A* 2g1i_A*
Probab=88.96 E-value=1.2 Score=48.23 Aligned_cols=157 Identities=12% Similarity=-0.000 Sum_probs=86.3
Q ss_pred HHHHHHHhhCCCCCEEEecCCccccccc-cccccCCCeeEeccCccchhhHHHHHHHHhhhcCCCcEEEEEcch-hhccc
Q 007800 395 VLFKHIQDMLSGDTAVIAETGDSWFNCQ-KLRLPENCGYEFQMQYGSIGWSVGATLGYAQAAKDKRVIACIGDG-SFQVT 472 (589)
Q Consensus 395 ~~~~~L~~~l~~~~iiv~d~G~~~~~~~-~~~~~~~~~~~~~~~~g~mG~~l~~aiGaala~~~~~vv~i~GDG-sf~~~ 472 (589)
.+++.|.+. .=+. ++.=-|....... .+......+++....-. .+.-+|.|.+.+. + +.+|++-=| +..-.
T Consensus 9 ~l~~~L~~~-GV~~-vfg~PG~~~~~l~~al~~~~~i~~v~~~~E~---~Aa~~A~Gyar~t-g-~~v~~~TsGpG~~N~ 81 (563)
T 2vk8_A 9 YLFERLKQV-NVNT-VFGLPGDFNLSLLDKIYEVEGMRWAGNANEL---NAAYAADGYARIK-G-MSCIITTFGVGELSA 81 (563)
T ss_dssp HHHHHHHHT-TCCE-EEECCCGGGHHHHHGGGGSTTCEECCCSSHH---HHHHHHHHHHHHH-S-CEEEEEETTHHHHHH
T ss_pred HHHHHHHHc-CCCE-EEEcCCcchHHHHHHHhhcCCceEEccCchH---HHHHHHHHHHHhh-C-CcEEEEcCCCcHHHH
Confidence 355555543 2233 3444454433221 12111233455443333 4455677877775 4 666666544 44445
Q ss_pred HHHHHHHHHhCCCeEEEEEeCCchhhhh--hhcCCCCCCCCCCChHHHHHHccCCCCCccEEEeCCHHHHHHHHHHhhh-
Q 007800 473 AQEISTMIRCGQRSIIFLINNGGYTIEV--EIHDGPYNVIKNWDYTGLVNAIHNGEGKCWTAKVRSEDELTEAMKTATG- 549 (589)
Q Consensus 473 ~~el~ta~~~~l~v~ivv~nN~~~~~~~--~~~~~~~~~~~~~d~~~la~a~G~~~~~~~~~~v~~~~~l~~al~~a~~- 549 (589)
.+.+.+|...++|+++|.-+-......+ .++...... ..-|+..+.+.+-- +..++.+++++...+++++.
T Consensus 82 ~~gia~A~~~~~Pll~itg~~~~~~~~~~~~~~~~~g~~-~~q~~~~~~~~~~k-----~~~~v~~~~~~~~~i~~A~~~ 155 (563)
T 2vk8_A 82 LNGIAGSYAEHVGVLHVVGVPSISAQAKQLLLHHTLGNG-DFTVFHRMSANISE-----TTAMITDIATAPAEIDRCIRT 155 (563)
T ss_dssp HHHHHHHHHHTCCEEEEEEECCHHHHHTTCCCTTSCSSS-CSSHHHHHHHTTCS-----EEEECCCTTTHHHHHHHHHHH
T ss_pred HHHHHHHHhhCCCEEEEECCCChHHhhcccccccccCCc-chHHHHHHhhhhEE-----EEEEeCCHHHHHHHHHHHHHH
Confidence 8899999999999999988765433211 000000010 01156777777765 77888886655444444443
Q ss_pred -cCCCCeEEEEEEcCC
Q 007800 550 -EQKDSLCFIEVFVHK 564 (589)
Q Consensus 550 -~~~~gp~viev~~~~ 564 (589)
....||+.|+++.|-
T Consensus 156 A~~~~GPV~l~iP~d~ 171 (563)
T 2vk8_A 156 TYVTQRPVYLGLPANL 171 (563)
T ss_dssp HHHHTSCEEEEEETTG
T ss_pred HHhCCCCEEEEechhh
Confidence 114599999999873
No 89
>2wvg_A PDC, pyruvate decarboxylase; thiamine diphosphate, lyase, flavoprotein, metal-binding, alcohol fermentation; HET: TPU; 1.75A {Zymomonas mobilis} PDB: 2wva_A* 2wvh_A 3oe1_A* 1zpd_A*
Probab=88.62 E-value=1.6 Score=47.32 Aligned_cols=123 Identities=8% Similarity=-0.005 Sum_probs=79.5
Q ss_pred CeeEeccCccchhhHHHHHHHHhhhcCCCcEEEEEcch-hhcccHHHHHHHHHhCCCeEEEEEeCCchhhhhhhcCCCCC
Q 007800 430 CGYEFQMQYGSIGWSVGATLGYAQAAKDKRVIACIGDG-SFQVTAQEISTMIRCGQRSIIFLINNGGYTIEVEIHDGPYN 508 (589)
Q Consensus 430 ~~~~~~~~~g~mG~~l~~aiGaala~~~~~vv~i~GDG-sf~~~~~el~ta~~~~l~v~ivv~nN~~~~~~~~~~~~~~~ 508 (589)
.+++....-. .+.-+|.|.+.+. + +.+|++-=| +..-..+.+.+|...++|+++|.-+-........ .....
T Consensus 42 i~~i~~~~E~---~Aa~~A~Gyar~t-g-~~v~~~TsGpG~~N~~~gia~A~~~~vPll~itg~~~~~~~~~~--~~~~~ 114 (568)
T 2wvg_A 42 MEQVYCCNEL---NCGFSAEGYARAK-G-AAAAVVTYSVGALSAFDAIGGAYAENLPVILISGAPNNNDHAAG--HVLHH 114 (568)
T ss_dssp SEEEECSSHH---HHHHHHHHHHHHH-S-CEEEEECTTTTHHHHHHHHHHHHHTTCCEEEEEEECCGGGTTTT--CBCTT
T ss_pred ceEeccCcHH---HHHHHHHHHHHhh-C-CeEEEEeCCCCHHHHHHHHHHHhhhCCCEEEEeCCCChhHhccC--cceee
Confidence 4455544333 4556678888775 4 777777555 4444588999999999999999887765433110 00001
Q ss_pred CC--CC-CChHHHHHHccCCCCCccEEEeCCHHHHHHHHHHhhh--cCCCCeEEEEEEcCC
Q 007800 509 VI--KN-WDYTGLVNAIHNGEGKCWTAKVRSEDELTEAMKTATG--EQKDSLCFIEVFVHK 564 (589)
Q Consensus 509 ~~--~~-~d~~~la~a~G~~~~~~~~~~v~~~~~l~~al~~a~~--~~~~gp~viev~~~~ 564 (589)
.+ .. .|...+.+.+-- +..++.+++++...+++|+. ....||+.|++..|-
T Consensus 115 ~~g~~~~~d~~~~~~~~tk-----~~~~v~~~~~~~~~l~~A~~~A~~~~GPV~l~iP~dv 170 (568)
T 2wvg_A 115 ALGKTDYHYQLEMAKNITA-----AAEAIYTPEEAPAKIDHVIKTALREKKPVYLEIACNI 170 (568)
T ss_dssp SCSSSCCCHHHHHHTTSCS-----CEEEECSGGGHHHHHHHHHHHHHHHTCCEEEEEEGGG
T ss_pred eccccchHHHHHHHHhhEe-----EEEEeCCHHHHHHHHHHHHHHHHhCCCCEEEEechhH
Confidence 11 11 267788887765 78899988877666666554 124599999999874
No 90
>1gpu_A Transketolase; transferase(ketone residues); HET: THD; 1.86A {Saccharomyces cerevisiae} SCOP: c.36.1.6 c.36.1.10 c.48.1.1 PDB: 1ngs_A* 1trk_A* 1ay0_A* 1tkb_A* 1tka_A* 1tkc_A*
Probab=88.52 E-value=0.9 Score=50.34 Aligned_cols=115 Identities=14% Similarity=0.105 Sum_probs=74.0
Q ss_pred eEEe-cCchhHHHHhhhhhhhccC-c-eEEEEeCCcchHHHHHHHHHhhhcCCcEEEEeC-CCCccccCCccceeeecCC
Q 007800 67 NLVG-CCNELNAGYAADGYARSRG-V-GACVVTFTVGGLSVLNAIAGAYSENLPVICIVG-GPNSNDYGTNRILHHTIGL 142 (589)
Q Consensus 67 ~~v~-~~hE~~A~~~A~gyar~tg-~-~v~~~t~GpG~~n~~~~l~~A~~~~~PllvI~g-~~~~~~~~~~~~~~~~~~~ 142 (589)
+++. ...|++++.+|.|+|...| + .++ .+..+-..-+..+|..+-..+.||+++.. +... .+.+..-||.
T Consensus 410 R~~d~gIaE~~~vg~a~GlA~~Gg~~~P~~-~~f~~F~~~~~~air~~a~~~lpvv~v~t~~g~g--~G~dG~tHq~--- 483 (680)
T 1gpu_A 410 RYIRYGIREHAMGAIMNGISAFGANYKPYG-GTFLNFVSYAAGAVRLSALSGHPVIWVATHDSIG--VGEDGPTHQP--- 483 (680)
T ss_dssp CEEECCSCHHHHHHHHHHHHHHCTTCEEEE-EEEHHHHGGGHHHHHHHHHHTCCCEEEEECCSGG--GCTTCTTTCC---
T ss_pred ceecCCccHHHHHHHHHHHHhcCCCceEEE-eehHHHHHHHHHHHHHHHhcCCCEEEEEeCCccc--cCCCCCccCC---
Confidence 4444 6789999999999998864 5 555 56666655567778777788999988853 3222 2211122322
Q ss_pred CChHHHHHhhhccee-EEEEeCChhhHHHHHHHHHHHhHhcCCcEEEEeCCC
Q 007800 143 PDFTQELRCFQAITC-SQAVVNNLGDAHELIDTAISTALKESKPVYISISCN 193 (589)
Q Consensus 143 ~~~~~~~~~~~~~tk-~~~~v~~~~~~~~~l~~A~~~a~~~~gPV~i~iP~d 193 (589)
..++.+++.+-. ....+.++.++..+++.|++.. ++||+|.+|..
T Consensus 484 ---~edla~lr~iP~l~V~~Pad~~e~~~~l~~A~~~~---~~Pv~i~~~r~ 529 (680)
T 1gpu_A 484 ---IETLAHFRSLPNIQVWRPADGNEVSAAYKNSLESK---HTPSIIALSRQ 529 (680)
T ss_dssp ---SSHHHHHHTSSSCEEECCCSHHHHHHHHHHHHHCS---SCCEEEECCSS
T ss_pred ---HHHHHHhcCCCCCEEEecCCHHHHHHHHHHHHHhC---CCcEEEEecCC
Confidence 234667776544 2445566777766666655422 69999999864
No 91
>1s5p_A NAD-dependent deacetylase; protein deacetylase, SIR2 homologue, hydrolase; HET: ALY; 1.96A {Escherichia coli} SCOP: c.31.1.5
Probab=88.09 E-value=0.52 Score=44.78 Aligned_cols=69 Identities=14% Similarity=0.152 Sum_probs=45.4
Q ss_pred HHHHHHhhhcCEEEEeCCCcCCcccccccccC--CCCceEEEcCCceeecC-CCccccccHHHHHHHHHHHh
Q 007800 294 SFCGEIVESADAYVFVGPIFNDYSSVGYSLLI--KKEKAIIVQPHRVTVGN-GPSLGWVFMADFLSALAKKL 362 (589)
Q Consensus 294 ~~~~~~l~~aD~vl~lG~~~~~~~~~~~~~~~--~~~~~i~id~d~~~~~~-~~~~~~~~~~~~l~~L~~~l 362 (589)
..+.+.+++||++|++|+++.-.+...+-... .+.++|.||.++..... .......++.++|+.|.+.+
T Consensus 159 ~~a~~~~~~adl~lviGTSl~V~Pa~~l~~~a~~~g~~~i~iN~~~t~~~~~~~~~i~~~~~~~l~~l~~~l 230 (235)
T 1s5p_A 159 DEIYMALSMADIFIAIGTSGHVYPAAGFVHEAKLHGAHTVELNLEPSQVGNEFAEKYYGPASQVVPEFVEKL 230 (235)
T ss_dssp HHHHHHHHHCSEEEEESCCTTEETGGGHHHHHHHTTCEEEEEESSSCC---CCSEEEESCHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCEEEEECcCCchhhHHHHHHHHHHcCCeEEEEECCCCCCCccccEEEeCCHHHHHHHHHHHH
Confidence 45677889999999999988654443332222 35689999998865431 12223347888888887665
No 92
>3lq1_A 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene- 1-carboxylate synthase; menaquinone biosynthesis, sephchc synthase, structural genomics; 2.60A {Listeria monocytogenes}
Probab=87.95 E-value=1.2 Score=48.38 Aligned_cols=117 Identities=10% Similarity=-0.008 Sum_probs=74.7
Q ss_pred CeeEeccCccchhhHHHHHHHHhhhcCCCcEEEEEcch-hhcccHHHHHHHHHhCCCeEEEEEeCCchhhhhhhcCCCCC
Q 007800 430 CGYEFQMQYGSIGWSVGATLGYAQAAKDKRVIACIGDG-SFQVTAQEISTMIRCGQRSIIFLINNGGYTIEVEIHDGPYN 508 (589)
Q Consensus 430 ~~~~~~~~~g~mG~~l~~aiGaala~~~~~vv~i~GDG-sf~~~~~el~ta~~~~l~v~ivv~nN~~~~~~~~~~~~~~~ 508 (589)
.+++....-. .+.-+|.|.+.+. +++.+|++-=| +..-....+.+|...++|+++|.-+-....+. .+.
T Consensus 50 i~~i~~~hE~---~Aa~aAdGyAr~t-G~pgv~~~TsGpG~~N~~~gia~A~~d~vPll~itG~~p~~~~g----~~~-- 119 (578)
T 3lq1_A 50 LKIYVDVDER---SAGFFALGLAKAS-KRPVVLLCTSGTAAANYFPAVAEANLSQIPLIVLTADRPHELRN----VGA-- 119 (578)
T ss_dssp CEEEECSSHH---HHHHHHHHHHHHH-CCCEEEEECSSHHHHTTHHHHHHHHHTTCCEEEEEEECCGGGTT----SSC--
T ss_pred ceEEEecCcH---HHHHHHHHHHHhh-CCCEEEEECCchhhhhhhHHHHHHHhcCCCeEEEeCCCCHHhhc----CCC--
Confidence 4455544333 3344677888774 67888877655 45556899999999999999988764432211 111
Q ss_pred CCCCCChHHHHHHccCCCCCccEEEeCCHHH-----------HHHHHHHhhhcCCCCeEEEEEEcC
Q 007800 509 VIKNWDYTGLVNAIHNGEGKCWTAKVRSEDE-----------LTEAMKTATGEQKDSLCFIEVFVH 563 (589)
Q Consensus 509 ~~~~~d~~~la~a~G~~~~~~~~~~v~~~~~-----------l~~al~~a~~~~~~gp~viev~~~ 563 (589)
+..+|...+.+.+-- +..++.++++ +++|+..|.. ...||+.|+++.|
T Consensus 120 -~Qe~d~~~~~~~~tk-----~~~~v~~~~~~~~~~~~i~~~l~~A~~~A~~-gr~GPV~l~iP~d 178 (578)
T 3lq1_A 120 -PQAMDQLHLYGSHVK-----DFTDMALPENSEEMLRYAKWHGSRAVDIAMK-TPRGPVHLNFPLR 178 (578)
T ss_dssp -TTCCCCTTTTGGGSS-----EEEECCCCCCSHHHHHHHHHHHHHHHHHHHS-SSCCCEEEEEECC
T ss_pred -CCCcCHhhHHhhhee-----eEeecCCCCCchHHHHHHHHHHHHHHHHhhC-CCCCcEEEECccC
Confidence 234577777777654 6777776654 3444444442 3479999999985
No 93
>3uk1_A Transketolase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, thiamine pyrophosphate; 2.15A {Burkholderia thailandensis} PDB: 3upt_A*
Probab=87.75 E-value=1.8 Score=48.07 Aligned_cols=115 Identities=15% Similarity=0.107 Sum_probs=72.4
Q ss_pred eEEec-CchhHHHHhhhhhhhccCc-eEEEEeCCcchHHHHHHHHHhhhcCCcEEEEeCCCCccccCCccceeeecCCCC
Q 007800 67 NLVGC-CNELNAGYAADGYARSRGV-GACVVTFTVGGLSVLNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPD 144 (589)
Q Consensus 67 ~~v~~-~hE~~A~~~A~gyar~tg~-~v~~~t~GpG~~n~~~~l~~A~~~~~PllvI~g~~~~~~~~~~~~~~~~~~~~~ 144 (589)
+++.+ .-|++++.+|.|.|...|. .++.+ ..+=+.-+...+-.+-..+.||+++....... .+.+..-||.
T Consensus 449 R~~d~GIaE~~mv~~AaGlA~~~G~~Pv~~~-f~~F~~~~~~~ir~~a~~~lpv~~v~thdg~g-vG~dG~THq~----- 521 (711)
T 3uk1_A 449 NHINYGVREFGMSAAINGLVLHGGYKPFGGT-FLTFSDYSRNALRVAALMKVPSIFVFTHDSIG-LGEDGPTHQS----- 521 (711)
T ss_dssp SEEECCSCHHHHHHHHHHHHHHSSCEEEEEE-EGGGHHHHHHHHHHHHHHTCCCEEEEECCSGG-GCTTCTTTCC-----
T ss_pred cEEEeCccHHHHHHHHHHHHHcCCCEEEEEE-hHHHHHHHHHHHHHhhhcCCCEEEEEECCCcC-cCCCCCccCC-----
Confidence 55554 7899999999999986575 55553 33333334556666567899999886322221 2221122322
Q ss_pred hHHHHHhhhcceeE-EEEeCChhhHHHHHHHHHHHhHhcCCcEEEEeCCC
Q 007800 145 FTQELRCFQAITCS-QAVVNNLGDAHELIDTAISTALKESKPVYISISCN 193 (589)
Q Consensus 145 ~~~~~~~~~~~tk~-~~~v~~~~~~~~~l~~A~~~a~~~~gPV~i~iP~d 193 (589)
..+..+++.+--. ...+.++.++..+++.|++ .++||||.+|..
T Consensus 522 -~ed~a~lr~iPnl~V~~Pad~~E~~~~l~~Ai~----~~~Pv~ir~~r~ 566 (711)
T 3uk1_A 522 -VEHVASLRLIPNLDVWRPADTVETAVAWTYAVA----HQHPSCLIFSRQ 566 (711)
T ss_dssp -SSHHHHHHTSTTCEEECCSSHHHHHHHHHHHHH----SSSCEEEECCSS
T ss_pred -hhHHHHHhcCCCCEEEecCCHHHHHHHHHHHHh----cCCCEEEEeeCC
Confidence 2246777776543 4456677777777777765 579999998853
No 94
>1w85_A Pyruvate dehydrogenase E1 component, alpha subunit; dehydrogenase, multienzyme complex, oxidoreductase; HET: TDP; 2.0A {Geobacillus stearothermophilus} SCOP: c.36.1.11 PDB: 3duf_A* 3dv0_A* 3dva_A* 1w88_A*
Probab=86.69 E-value=1 Score=45.76 Aligned_cols=114 Identities=18% Similarity=0.100 Sum_probs=68.2
Q ss_pred HHHhhhhhhhcc---Cc-eEEEEeCCcchHHH---HHHHHHhhhcCCcEEEEeCCCCccccCCccceeeecCCCChHHHH
Q 007800 77 AGYAADGYARSR---GV-GACVVTFTVGGLSV---LNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQEL 149 (589)
Q Consensus 77 A~~~A~gyar~t---g~-~v~~~t~GpG~~n~---~~~l~~A~~~~~PllvI~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (589)
..-+|.|.+++. +. .++++..|=|.++. .-++..|..-+.|+|+|.-+.... .... ........ +..
T Consensus 147 ~lp~AvG~A~A~~~~~~~~~vv~i~GDGa~~~G~~~Eal~~A~~~~lpvi~vv~NN~~g-i~~~--~~~~~~~~---d~~ 220 (368)
T 1w85_A 147 QYIQAAGVALGLKMRGKKAVAITYTGDGGTSQGDFYEGINFAGAFKAPAIFVVQNNRFA-ISTP--VEKQTVAK---TLA 220 (368)
T ss_dssp HHHHHHHHHHHHHHTTCSCCEEEEEETGGGGSHHHHHHHHHHHHTTCCEEEEEEECSEE-TTEE--GGGTCSCS---CSG
T ss_pred cccHHHHHHHHhHhhCCCCeEEEEEchhhhhhcHHHHHHHHHHHHCcCEEEEEEcCCcc-ceec--cccccCCC---CHH
Confidence 344566666543 33 45555567777762 225666788899999998654321 1110 00011111 224
Q ss_pred HhhhcceeEEEEeC--ChhhHHHHHHHHHHHhHhcCCcEEEEeCCCCCC
Q 007800 150 RCFQAITCSQAVVN--NLGDAHELIDTAISTALKESKPVYISISCNLPG 196 (589)
Q Consensus 150 ~~~~~~tk~~~~v~--~~~~~~~~l~~A~~~a~~~~gPV~i~iP~dv~~ 196 (589)
++++.+--...++. +++++...+++|++.+....||+.|++...-..
T Consensus 221 ~~a~a~G~~~~~VdG~D~~av~~a~~~A~~~~r~~~gP~lIe~~t~r~~ 269 (368)
T 1w85_A 221 QKAVAAGIPGIQVDGMDPLAVYAAVKAARERAINGEGPTLIETLCFRYG 269 (368)
T ss_dssp GGGGGTTCCEEEEETTCHHHHHHHHHHHHHHHHTTSCCEEEEEECCCSS
T ss_pred HHHHHCCCCEEEEcCCCHHHHHHHHHHHHHHHHhcCCCEEEEEEeeccC
Confidence 45555544445565 688888888888888887789999999766543
No 95
>2hjh_A NAD-dependent histone deacetylase SIR2; protein, sirtuin, acetyl-ADP-ribose, nicotinamide, hydrolase; HET: XYQ; 1.85A {Saccharomyces cerevisiae}
Probab=85.99 E-value=1 Score=45.50 Aligned_cols=71 Identities=10% Similarity=0.014 Sum_probs=47.2
Q ss_pred HHHHHhhhcCEEEEeCCCcCCcccccccc-cCCCCceEEEcCCceeecCCCccccccHHHHHHHHHHHhhcC
Q 007800 295 FCGEIVESADAYVFVGPIFNDYSSVGYSL-LIKKEKAIIVQPHRVTVGNGPSLGWVFMADFLSALAKKLRKN 365 (589)
Q Consensus 295 ~~~~~l~~aD~vl~lG~~~~~~~~~~~~~-~~~~~~~i~id~d~~~~~~~~~~~~~~~~~~l~~L~~~l~~~ 365 (589)
.+.+.+.+||++|++|+++.-.....+-. ...+..+|.||.++............++..++..|.+.+...
T Consensus 248 ~a~~~~~~aDllLviGTSL~V~Paa~lv~~~~~~~~~v~IN~~~t~~~~~dl~i~g~~~~vl~~L~~~lgw~ 319 (354)
T 2hjh_A 248 SIREDILECDLLICIGTSLKVAPVSEIVNMVPSHVPQVLINRDPVKHAEFDLSLLGYCDDIAAMVAQKCGWT 319 (354)
T ss_dssp HHHHHTTTCCEEEEESCCCCEETGGGHHHHSCTTSCEEEEESSCCTTSCCSEEEESCHHHHHHHHHHHHTCC
T ss_pred HHHHHHhhCCEEEEECcCCCchhHHHHHHHHhcCCcEEEEcCCCCCCCCcCEEEeCCHHHHHHHHHHHcCCC
Confidence 45566789999999999987554433322 223567899998876422112233447889999999888644
No 96
>1ovm_A Indole-3-pyruvate decarboxylase; thiamine diphosphate, indole-3-acetic acid, TDP dependent enzyme, lyase; HET: TPP; 2.65A {Enterobacter cloacae} SCOP: c.31.1.3 c.36.1.5 c.36.1.9
Probab=85.84 E-value=3.1 Score=44.74 Aligned_cols=120 Identities=9% Similarity=-0.064 Sum_probs=73.3
Q ss_pred CeeEeccCccchhhHHHHHHHHhhhcCCCcEEEEEcch-hhcccHHHHHHHHHhCCCeEEEEEeCCchhhhhhhcCCCCC
Q 007800 430 CGYEFQMQYGSIGWSVGATLGYAQAAKDKRVIACIGDG-SFQVTAQEISTMIRCGQRSIIFLINNGGYTIEVEIHDGPYN 508 (589)
Q Consensus 430 ~~~~~~~~~g~mG~~l~~aiGaala~~~~~vv~i~GDG-sf~~~~~el~ta~~~~l~v~ivv~nN~~~~~~~~~~~~~~~ 508 (589)
.+++....-. .+.-+|.|.+.+. + +.+|++-=| +..-....+.+|...++|+++|.-+-......+. ...+.
T Consensus 44 i~~i~~~~E~---~A~~~A~Gyar~t-g-~~v~~~tsGpG~~N~~~gv~~A~~~~~Pll~itg~~p~~~~~~~--~~~~~ 116 (552)
T 1ovm_A 44 ICWVGCANEL---NASYAADGYARCK-G-FAALLTTFGVGELSAMNGIAGSYAEHVPVLHIVGAPGTAAQQRG--ELLHH 116 (552)
T ss_dssp CEEEECSSHH---HHHHHHHHHHHHH-S-CEEEEEETTHHHHHTHHHHHHHHHTTCCEEEEEEECCHHHHHHT--CCCTT
T ss_pred ceEEeeCcHH---HHHHHHHHHHHhh-C-CcEEEEccCCcHHHHHHHHHHHhhhcCCEEEEECCCCHHHHhcc--ccccc
Confidence 4455544333 4556778888875 4 666666444 4455689999999999999999987664433110 11111
Q ss_pred CCC---CCChHHHHHHccCCCCCccEEEeCC---HHHHHHHHHHhhhcCCCCeEEEEEEcC
Q 007800 509 VIK---NWDYTGLVNAIHNGEGKCWTAKVRS---EDELTEAMKTATGEQKDSLCFIEVFVH 563 (589)
Q Consensus 509 ~~~---~~d~~~la~a~G~~~~~~~~~~v~~---~~~l~~al~~a~~~~~~gp~viev~~~ 563 (589)
.+. .-|+..+++.+-- +.+.+.+ ++.++++++.+.. ..||+.|+++.|
T Consensus 117 ~~g~~~~q~~~~~~~~~tk-----~~~~v~~~~~~~~i~~A~~~a~~--~~GPV~l~iP~d 170 (552)
T 1ovm_A 117 TLGDGEFRHFYHMSEPITV-----AQAVLTEQNACYEIDRVLTTMLR--ERRPGYLMLPAD 170 (552)
T ss_dssp SCSSSCCSHHHHHTGGGCS-----EEEECCTTTHHHHHHHHHHHHHH--HTCCEEEEEEHH
T ss_pred ccCCCcHHHHHHHHHhhee-----EEEEEccccHHHHHHHHHHHHHh--CCCCEEEEeehh
Confidence 111 1145666666654 6788887 3444555555543 359999999875
No 97
>1yc5_A NAD-dependent deacetylase; SIR2, sirtuin, SIR2TM, SIRT1, nicotinamide, hydrolase; HET: ALY; 1.40A {Thermotoga maritima} SCOP: c.31.1.5 PDB: 2h2d_A* 2h2f_A 2h2g_A* 2h2h_A* 2h2i_A* 2h4f_A* 2h4j_A* 3d4b_A* 3d81_A* 3pdh_A* 2h4h_A* 3jr3_A* 2h59_A*
Probab=84.81 E-value=0.92 Score=43.37 Aligned_cols=69 Identities=12% Similarity=0.094 Sum_probs=44.9
Q ss_pred HHHHHhhhcCEEEEeCCCcCCccccccccc--CCCCceEEEcCCceeecC-CCccccccHHHHHHHHHHHhh
Q 007800 295 FCGEIVESADAYVFVGPIFNDYSSVGYSLL--IKKEKAIIVQPHRVTVGN-GPSLGWVFMADFLSALAKKLR 363 (589)
Q Consensus 295 ~~~~~l~~aD~vl~lG~~~~~~~~~~~~~~--~~~~~~i~id~d~~~~~~-~~~~~~~~~~~~l~~L~~~l~ 363 (589)
.+.+.+++||++|++|+++.-.+...+-.. .++.++|.||.++..... .......++.++|+.|.+.|.
T Consensus 173 ~a~~~~~~adl~lviGTSl~V~P~~~l~~~a~~~g~~~i~IN~~~~~~d~~~~~~i~~~~~~~l~~l~~~lg 244 (246)
T 1yc5_A 173 EAIGLSSRASLMIVLGSSLVVYPAAELPLITVRSGGKLVIVNLGETPFDDIATLKYNMDVVEFARRVMEEGG 244 (246)
T ss_dssp HHHHHHHHCSEEEEESCCSCEETGGGHHHHHHHHTCEEEEECSSCCTTGGGCSEEECSCHHHHHHHHHHHHT
T ss_pred HHHHHHhcCCEEEEECCCCcchhHHHHHHHHHHcCCeEEEEeCCCCCCCcceeEEEeCCHHHHHHHHHHHcC
Confidence 456677899999999998765443332111 235679999988765421 122234478899999877664
No 98
>2vbf_A Branched-chain alpha-ketoacid decarboxylase; KDCA, flavoprotein, THDP-dependent enzymes, thiamine pyrophosphate, lyase; HET: TPP; 1.60A {Lactococcus lactis} PDB: 2vbg_A*
Probab=84.11 E-value=3.5 Score=44.53 Aligned_cols=121 Identities=6% Similarity=-0.027 Sum_probs=74.7
Q ss_pred CeeEeccCccchhhHHHHHHHHhhhcCCCcEEEEEcch-hhcccHHHHHHHHHhCCCeEEEEEeCCchhhhhhhcCCCCC
Q 007800 430 CGYEFQMQYGSIGWSVGATLGYAQAAKDKRVIACIGDG-SFQVTAQEISTMIRCGQRSIIFLINNGGYTIEVEIHDGPYN 508 (589)
Q Consensus 430 ~~~~~~~~~g~mG~~l~~aiGaala~~~~~vv~i~GDG-sf~~~~~el~ta~~~~l~v~ivv~nN~~~~~~~~~~~~~~~ 508 (589)
.+++....-. .+.-+|.|.+.+. + +.+|++-=| +..-..+.+.+|...++|+++|.-+.......+. .....
T Consensus 64 i~~i~~~~E~---~A~~~A~GyAr~t-G-~~v~~~tsGpG~~N~~~gi~~A~~~~vPlv~itg~~~~~~~~~~--~~~~~ 136 (570)
T 2vbf_A 64 MKWIGNANEL---NASYMADGYARTK-K-AAAFLTTFGVGELSAINGLAGSYAENLPVVEIVGSPTSKVQNDG--KFVHH 136 (570)
T ss_dssp CEEEECSSHH---HHHHHHHHHHHHH-S-CEEEEEETTHHHHHHHHHHHHHHHTTCCEEEEEEECCHHHHHHT--CCCTT
T ss_pred CeEECcCcHH---HHHHHHHHHHHHh-C-CeEEEEcCCCCHHHHHHHHHHHhhhCCCEEEEeCCCCHHHhhcc--cccee
Confidence 4455544433 4556788888764 4 666666444 4445688999999999999999988775443211 00000
Q ss_pred CCC--CC-ChHHHHHHccCCCCCccEEEeCCHHHHHHHHHHhhh--cCCCCeEEEEEEcC
Q 007800 509 VIK--NW-DYTGLVNAIHNGEGKCWTAKVRSEDELTEAMKTATG--EQKDSLCFIEVFVH 563 (589)
Q Consensus 509 ~~~--~~-d~~~la~a~G~~~~~~~~~~v~~~~~l~~al~~a~~--~~~~gp~viev~~~ 563 (589)
.+. .. ++..+++.+-- +...+.+ +++...+++++. ....||+.|+++.|
T Consensus 137 ~~~~~~~~~~~~~~~~~tk-----~~~~v~~-~~~~~~l~~A~~~A~~~~GPV~l~iP~d 190 (570)
T 2vbf_A 137 TLADGDFKHFMKMHEPVTA-----ARTLLTA-ENATYEIDRVLSQLLKERKPVYINLPVD 190 (570)
T ss_dssp SCSSSCCCHHHHHTGGGCS-----EEEECCT-TTHHHHHHHHHHHHHHHCCCEEEEEEHH
T ss_pred eccccchHHHHHHhhhhEE-----EEEEECc-ccHHHHHHHHHHHHhhCCCCEEEEcchh
Confidence 010 11 35667777664 6778877 666555555543 11459999999875
No 99
>3m49_A Transketolase; alpha-beta-alpha sandwich, csgid, transferase, structural genomics, center for structural genomics of infectious diseases; HET: MSE TDP PG5 TRS BTB; 2.00A {Bacillus anthracis} PDB: 3hyl_A*
Probab=83.77 E-value=3.1 Score=45.96 Aligned_cols=113 Identities=21% Similarity=0.167 Sum_probs=68.2
Q ss_pred EecCchhHHHHhhhhhhhccCc-eEEEEeCCcchHHHHHHHHHhhhcCCcEEEEeCCCCccccCCccceeeecCCCChHH
Q 007800 69 VGCCNELNAGYAADGYARSRGV-GACVVTFTVGGLSVLNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQ 147 (589)
Q Consensus 69 v~~~hE~~A~~~A~gyar~tg~-~v~~~t~GpG~~n~~~~l~~A~~~~~PllvI~g~~~~~~~~~~~~~~~~~~~~~~~~ 147 (589)
-...-|++++.+|.|.|...|. .+|- |..+=..-+-.++..+-..+.||+++....... .+.+..-||.+ .
T Consensus 431 d~GIaE~~mv~~A~GlA~~gG~~P~~~-tf~~Fs~f~~~air~~al~~lpVv~v~~~~gig-vG~dG~THq~i------e 502 (690)
T 3m49_A 431 WYGVREFAMGAAMNGIALHGGLKTYGG-TFFVFSDYLRPAIRLAALMQLPVTYVFTHDSIA-VGEDGPTHEPI------E 502 (690)
T ss_dssp ECCSCHHHHHHHHHHHHHHSSCEEEEE-EEGGGGGGGHHHHHHHHHHTCCCEEEEECCSGG-GCTTCGGGCCS------S
T ss_pred EcCchHHHHHHHHHHHHHcCCCEEEEE-ecHHHHHHHHHHHHHHHhcCCCcEEEEECCCcC-CCCCCCccCCH------H
Confidence 3457899999999999998665 5554 333322333455666667899998887433221 22221233322 2
Q ss_pred HHHhhhcceeE-EEEeCChhhHHHHHHHHHHHhHhc-CCcEEEEeCCC
Q 007800 148 ELRCFQAITCS-QAVVNNLGDAHELIDTAISTALKE-SKPVYISISCN 193 (589)
Q Consensus 148 ~~~~~~~~tk~-~~~v~~~~~~~~~l~~A~~~a~~~-~gPV~i~iP~d 193 (589)
++.+++.+--. ...+.++.++..+ ++.|... .+||+|.+|+.
T Consensus 503 d~a~lr~iPnl~V~~Pad~~E~~~~----l~~Ai~~~~~Pv~ir~~R~ 546 (690)
T 3m49_A 503 QLAALRAMPNVSVIRPADGNESVAA----WRLALESTNKPTALVLTRQ 546 (690)
T ss_dssp HHHHHHTSTTCEEECCSSHHHHHHH----HHHHHHCSSSCEEEECCSS
T ss_pred HHHHHhcCCCCEEEeeCCHHHHHHH----HHHHHHcCCCCEEEEeecc
Confidence 36777776543 3445565555544 4555554 69999998853
No 100
>3pki_A NAD-dependent deacetylase sirtuin-6; ADP ribose, structural genomics, structural genomics consortium, SGC, hydrolase; HET: AR6; 2.04A {Homo sapiens} PDB: 3pkj_A*
Probab=83.68 E-value=1.7 Score=43.53 Aligned_cols=71 Identities=14% Similarity=0.150 Sum_probs=47.4
Q ss_pred HHHHHhhhcCEEEEeCCCcCCccccccccc--CCCCceEEEcCCceeecC-CCccccccHHHHHHHHHHHhhcC
Q 007800 295 FCGEIVESADAYVFVGPIFNDYSSVGYSLL--IKKEKAIIVQPHRVTVGN-GPSLGWVFMADFLSALAKKLRKN 365 (589)
Q Consensus 295 ~~~~~l~~aD~vl~lG~~~~~~~~~~~~~~--~~~~~~i~id~d~~~~~~-~~~~~~~~~~~~l~~L~~~l~~~ 365 (589)
.+.+.+.+||++|++|+++.-+.-.++-.. ..+.++|.||.++..... .......++.++|..|.+.|...
T Consensus 199 ~A~~~~~~aDllLViGTSL~V~Paa~Lp~~a~~~G~~vviIN~~pT~~d~~adl~i~g~a~evl~~L~~~Lg~~ 272 (355)
T 3pki_A 199 LADEASRNADLSITLGTSLQIRPSGNLPLATKRRGGRLVIVNLQPTKHDRHADLRIHGYVDEVMTRLMEHLGLE 272 (355)
T ss_dssp HHHHHHHHCSEEEEESCCCCSTTGGGTTHHHHHTTCEEEEECSSCCTTGGGCSEEECSCHHHHHHHHHHHTTCC
T ss_pred HHHHHHhcCCEEEEEeeCCCchhhhhhHHHHHhcCCEEEEECCCCCCCCCccCEEEeCCHHHHHHHHHHHhCCC
Confidence 455677899999999999876554443211 235578999988764321 12223346889999999888643
No 101
>1m2k_A Silent information regulator 2; protein-ligand complex, gene regulation; HET: APR; 1.47A {Archaeoglobus fulgidus} SCOP: c.31.1.5 PDB: 1m2g_A* 1m2h_A* 1m2j_A* 1m2n_A* 1ici_A*
Probab=83.62 E-value=1.3 Score=42.38 Aligned_cols=69 Identities=14% Similarity=0.133 Sum_probs=44.6
Q ss_pred HHHHHhhhcCEEEEeCCCcCCccccccccc--CCCCceEEEcCCceeecC-CCccccccHHHHHHHHHHHhh
Q 007800 295 FCGEIVESADAYVFVGPIFNDYSSVGYSLL--IKKEKAIIVQPHRVTVGN-GPSLGWVFMADFLSALAKKLR 363 (589)
Q Consensus 295 ~~~~~l~~aD~vl~lG~~~~~~~~~~~~~~--~~~~~~i~id~d~~~~~~-~~~~~~~~~~~~l~~L~~~l~ 363 (589)
.+.+.+++||++|++|+++.-.+...+... .++.++|.||.++..... .......++.++|+.|.+.+.
T Consensus 170 ~a~~~~~~adlllviGTSl~V~P~~~l~~~a~~~g~~~i~IN~~~~~~d~~~~~~i~~~~~~~l~~l~~~l~ 241 (249)
T 1m2k_A 170 RAMREVERADVIIVAGTSAVVQPAASLPLIVKQRGGAIIEINPDETPLTPIADYSLRGKAGEVMDELVRHVR 241 (249)
T ss_dssp HHHHHHHHCSEEEEESCCSCSTTGGGHHHHHHHTTCEEEEECSSCCTTGGGCSEEECSCHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCEEEEEccCCCccchHHHHHHHHHcCCeEEEEeCCCCCCCcceeEEEeCCHHHHHHHHHHHHH
Confidence 456677899999999998765543332211 246689999998765421 122233478888888876653
No 102
>1ma3_A SIR2-AF2, transcriptional regulatory protein, SIR2 family; enzyme-substrate complex, protein binding, transcription; HET: ALY MES; 2.00A {Archaeoglobus fulgidus} SCOP: c.31.1.5 PDB: 1s7g_A* 1yc2_A*
Probab=83.36 E-value=1 Score=43.22 Aligned_cols=69 Identities=16% Similarity=0.146 Sum_probs=44.5
Q ss_pred HHHHHhhhcCEEEEeCCCcCCccccccccc--CCCCceEEEcCCceeecC-CCccccccHHHHHHHHHHHhh
Q 007800 295 FCGEIVESADAYVFVGPIFNDYSSVGYSLL--IKKEKAIIVQPHRVTVGN-GPSLGWVFMADFLSALAKKLR 363 (589)
Q Consensus 295 ~~~~~l~~aD~vl~lG~~~~~~~~~~~~~~--~~~~~~i~id~d~~~~~~-~~~~~~~~~~~~l~~L~~~l~ 363 (589)
.+.+.+++||++|++|+++.-.+...+... .++.++|.||.++..... .......++..+|+.|.+.+.
T Consensus 176 ~a~~~~~~adl~lviGTSl~V~P~~~l~~~a~~~g~~~i~iN~~~~~~d~~~~~~i~~~~~~~l~~l~~~l~ 247 (253)
T 1ma3_A 176 EAIEEAKHCDAFMVVGSSLVVYPAAELPYIAKKAGAKMIIVNAEPTMADPIFDVKIIGKAGEVLPKIVEEVK 247 (253)
T ss_dssp HHHHHHHHCSEEEEESCCSCEETGGGHHHHHHHHTCEEEEEESSCCTTGGGCSEEEESCHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCEEEEECCCceeccHHHHHHHHHHcCCeEEEEeCCCCCCCCceeEEEeCCHHHHHHHHHHHHH
Confidence 456677899999999998765443332111 235679999988764421 122233478888988876663
No 103
>3k35_A NAD-dependent deacetylase sirtuin-6; rossmann fold, Zn-binding domain, structural genomics, struc genomics consortium, SGC, ADP-ribosylation; HET: APR; 2.00A {Homo sapiens}
Probab=83.32 E-value=1.7 Score=42.90 Aligned_cols=71 Identities=15% Similarity=0.156 Sum_probs=47.4
Q ss_pred HHHHHhhhcCEEEEeCCCcCCcccccccc--cCCCCceEEEcCCceeecC-CCccccccHHHHHHHHHHHhhcC
Q 007800 295 FCGEIVESADAYVFVGPIFNDYSSVGYSL--LIKKEKAIIVQPHRVTVGN-GPSLGWVFMADFLSALAKKLRKN 365 (589)
Q Consensus 295 ~~~~~l~~aD~vl~lG~~~~~~~~~~~~~--~~~~~~~i~id~d~~~~~~-~~~~~~~~~~~~l~~L~~~l~~~ 365 (589)
.+.+.+.+||++|++|+++.-+.-.++-. ...+.+++.||.++..... .......++.++|..|.+.|...
T Consensus 199 ~a~~~~~~aDllLViGTSL~V~Paa~l~~~a~~~G~~vviIN~~~t~~d~~adl~i~g~~~evl~~L~~~Lg~~ 272 (318)
T 3k35_A 199 LADEASRNADLSITLGTSLQIRPSGNLPLATKRRGGRLVIVNLQPTKHDRHADLRIHGYVDEVMTRLMKHLGLE 272 (318)
T ss_dssp HHHHHHHTCSEEEEESCCCCSTTGGGHHHHHHHTTCEEEEECSSCCTTGGGCSEEECSCHHHHHHHHHHHHTCC
T ss_pred HHHHHHhcCCEEEEEccCCCchhhhhhHHHHHhcCCEEEEECCCCCCCCCcccEEEeCCHHHHHHHHHHHhCCC
Confidence 45667789999999999987655443321 1245678999988764321 12223346889999999888643
No 104
>1yd7_A 2-keto acid:ferredoxin oxidoreductase subunit alpha; structural genomics, southeast collaboratory for structural genomics, secsg; 2.30A {Pyrococcus furiosus}
Probab=81.21 E-value=1.3 Score=45.58 Aligned_cols=107 Identities=14% Similarity=0.029 Sum_probs=59.1
Q ss_pred hhHHHHHHHHhhhcCCCcEEEEEcchhhcccHHHHHHHHHhCCCeEEEEEeCCchhhhhhhcCCCCCCCCCCChH--HHH
Q 007800 442 GWSVGATLGYAQAAKDKRVIACIGDGSFQVTAQEISTMIRCGQRSIIFLINNGGYTIEVEIHDGPYNVIKNWDYT--GLV 519 (589)
Q Consensus 442 G~~l~~aiGaala~~~~~vv~i~GDGsf~~~~~el~ta~~~~l~v~ivv~nN~~~~~~~~~~~~~~~~~~~~d~~--~la 519 (589)
..++.+|+|++++. .|.++...|.|-.++ ...|.++...++|+++++.+-.+.+..... ..+ .-|.. ..+
T Consensus 74 ~~a~~~a~Gaa~aG-~r~~~~ts~~G~~~~-~d~l~~aa~~~~P~Vi~~~~~~~~~~g~~~----~~~--~sd~~~~~~~ 145 (395)
T 1yd7_A 74 IASIAAAIGASWAG-AKAMTATSGPGFSLM-QENIGYAVMTETPVVIVDVQRSGPSTGQPT----LPA--QGDIMQAIWG 145 (395)
T ss_dssp HHHHHHHHHHHHTT-CCEEEEEETTHHHHH-TTTCC----CCCCEEEEEEC-----------------------------
T ss_pred HHHHHHHHHHHHhC-CcEEEEeCchHHHHH-HHHHHHHHhcCCCEEEEEeeCCCCCCCCCc----ccc--hhHHHHHHhc
Confidence 36778899999873 567777778875553 444566678899999998887765421000 000 00111 112
Q ss_pred H--HccCCCCCccEEEeCCHHHHHHHHHHhhh--cCCCCeEEEEEE
Q 007800 520 N--AIHNGEGKCWTAKVRSEDELTEAMKTATG--EQKDSLCFIEVF 561 (589)
Q Consensus 520 ~--a~G~~~~~~~~~~v~~~~~l~~al~~a~~--~~~~gp~viev~ 561 (589)
. .+|. ..+...+++|....+..|+. .+.+.|+++...
T Consensus 146 ~~g~~g~-----~vl~p~~~qea~~l~~~A~~lA~~~~~PVi~~~~ 186 (395)
T 1yd7_A 146 THGDHSL-----IVLSPSTVQEAFDFTIRAFNLSEKYRTPVILLTD 186 (395)
T ss_dssp ---CCCC-----EEECCCSHHHHHHHHHHHHHHHHHHTSEEEEEEC
T ss_pred cCCCcce-----EEEeCCCHHHHHHHHHHHHHHHHHHCCCEEEEcc
Confidence 2 2345 77778899998888888873 225689887753
No 105
>3riy_A NAD-dependent deacetylase sirtuin-5; desuccinylase, demalonylase, posttranslational modification, binding domain, rossmann fold domain; HET: SLL NAD; 1.55A {Homo sapiens} SCOP: c.31.1.5 PDB: 3rig_A* 4f4u_A* 4f56_A* 4hda_A* 2b4y_A* 2nyr_A* 4g1c_A*
Probab=80.90 E-value=1.6 Score=42.31 Aligned_cols=65 Identities=9% Similarity=-0.087 Sum_probs=41.9
Q ss_pred HHHHHhhhcCEEEEeCCCcCCcccccccc--cCCCCceEEEcCCceeecC-CCccccccHHHHHHHHH
Q 007800 295 FCGEIVESADAYVFVGPIFNDYSSVGYSL--LIKKEKAIIVQPHRVTVGN-GPSLGWVFMADFLSALA 359 (589)
Q Consensus 295 ~~~~~l~~aD~vl~lG~~~~~~~~~~~~~--~~~~~~~i~id~d~~~~~~-~~~~~~~~~~~~l~~L~ 359 (589)
.+.+.+.+||++|++|+++.-+.-..+-. ..++.+++.||.++..... .......++..+|..|.
T Consensus 205 ~a~~~~~~aDl~lviGTSl~V~Paa~l~~~a~~~g~~~v~IN~~~t~~d~~~~~~i~g~~~~~l~~l~ 272 (273)
T 3riy_A 205 EVDRELAHCDLCLVVGTSSVVYPAAMFAPQVAARGVPVAEFNTETTPATNRFRFHFQGPCGTTLPEAL 272 (273)
T ss_dssp HHHHHHHHCSEEEEESCCSCEETGGGHHHHHHHTTCCEEEEESSCCTTGGGSSEEEESCHHHHHHHHH
T ss_pred HHHHHHhcCCEEEEEeeCCcchhHHHhHHHHHHCCCEEEEECCCCCCCCcceeEEEeCCHHHHHHHHh
Confidence 45667789999999999986554433321 2256789999988764421 12222346778887763
No 106
>2bfd_A 2-oxoisovalerate dehydrogenase alpha subunit; oxidoreductase, multi-enzyme complex, acylation, oxidative decarboxylation, maple syrup urine disease; HET: TDP; 1.39A {Homo sapiens} SCOP: c.36.1.11 PDB: 1v16_A* 2bfc_A* 1v1r_A* 1olu_A* 2bfb_A* 1v1m_A* 2bew_A* 1dtw_A* 1olx_A* 1ols_A* 1wci_A* 1x80_A* 2beu_A* 1u5b_A* 2bev_A* 1v11_A* 1x7x_A* 1x7y_A* 1x7w_A* 1x7z_A* ...
Probab=80.23 E-value=3.8 Score=42.10 Aligned_cols=110 Identities=15% Similarity=0.029 Sum_probs=63.1
Q ss_pred Hhhhhhhhcc---Cc-eEEEEeCCcchHH---HHHHHHHhhhcCCcEEEEeCCCCccccCCccceeeecCCCChHHHHHh
Q 007800 79 YAADGYARSR---GV-GACVVTFTVGGLS---VLNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQELRC 151 (589)
Q Consensus 79 ~~A~gyar~t---g~-~v~~~t~GpG~~n---~~~~l~~A~~~~~PllvI~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (589)
-+|.|.+.+. +. .++++..|=|.++ ..-++.-|..-+.|+|+|.-+.... .... ...... ..+....
T Consensus 169 p~AvG~AlA~~~~~~~~~vv~~~GDGa~~~G~~~Eal~~A~~~~lpvi~vv~NN~~~-i~~~--~~~~~~---~~d~~~~ 242 (400)
T 2bfd_A 169 PQAVGAAYAAKRANANRVVICYFGEGAASEGDAHAGFNFAATLECPIIFFCRNNGYA-ISTP--TSEQYR---GDGIAAR 242 (400)
T ss_dssp HHHHHHHHHHHHHTCCCCEEEEEETTGGGSHHHHHHHHHHHHTTCCEEEEEEECSEE-TTEE--GGGTCS---SSTTGGG
T ss_pred cHHHHHHHhhhhhCCCCeEEEEECchhhhcChHHHHHHHHHHHCcCEEEEEECCcee-eeec--ccccCC---CCCHHHH
Confidence 3555555442 22 3344444656554 2255666777788999998554221 1110 000111 1123455
Q ss_pred hhcceeEEEEeC--ChhhHHHHHHHHHHHhHhcCCcEEEEeCCCC
Q 007800 152 FQAITCSQAVVN--NLGDAHELIDTAISTALKESKPVYISISCNL 194 (589)
Q Consensus 152 ~~~~tk~~~~v~--~~~~~~~~l~~A~~~a~~~~gPV~i~iP~dv 194 (589)
++.+--...++. +++++...+++|++.+....+|+.|++-..-
T Consensus 243 a~a~G~~~~~VdG~D~~av~~a~~~A~~~ar~~~~P~lIe~~tyR 287 (400)
T 2bfd_A 243 GPGYGIMSIRVDGNDVFAVYNATKEARRRAVAENQPFLIEAMTYR 287 (400)
T ss_dssp TGGGTCEEEEEETTCHHHHHHHHHHHHHHHHHHTCCEEEEEECCC
T ss_pred HHHcCCcEEEEeCCCHHHHHHHHHHHHHHHHhCCCCEEEEEEeee
Confidence 555544444554 5778888888888888777899999987643
No 107
>2l69_A Rossmann 2X3 fold protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Artificial gene}
Probab=80.22 E-value=5.8 Score=30.88 Aligned_cols=58 Identities=14% Similarity=0.238 Sum_probs=41.1
Q ss_pred ChHHHHHHccCCCCCccEEEeCCHHHHHHHHHHhhhcCCCCeEEEEEEcCCCCChHHHHHHHHHh
Q 007800 514 DYTGLVNAIHNGEGKCWTAKVRSEDELTEAMKTATGEQKDSLCFIEVFVHKDDTSKELLEWGSRV 578 (589)
Q Consensus 514 d~~~la~a~G~~~~~~~~~~v~~~~~l~~al~~a~~~~~~gp~viev~~~~~~~~~~~~~~~~~~ 578 (589)
.|..+.+--|+ +..+|.++.+|++.+++... .-..+++.|.+|..+-.....++.+.+
T Consensus 17 kfkdiikkngf-----kvrtvrspqelkdsieelvk--kynativvvvvddkewaekairfvksl 74 (134)
T 2l69_A 17 KFKDIIKKNGF-----KVRTVRSPQELKDSIEELVK--KYNATIVVVVVDDKEWAEKAIRFVKSL 74 (134)
T ss_dssp HHHHHHHHTTC-----EEEEECSHHHHHHHHHHHTT--CCCCEEEEEECSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCc-----eEEEecCHHHHHHHHHHHHH--HhCCeEEEEEEccHHHHHHHHHHHHhc
Confidence 47778888888 89999999999999999874 444666667776544444444444443
No 108
>4iao_A NAD-dependent histone deacetylase SIR2; protein complex, deacetylase, nucleus, hydrolase-trans complex; HET: APR; 2.90A {Saccharomyces cerevisiae}
Probab=79.84 E-value=2.6 Score=43.99 Aligned_cols=71 Identities=10% Similarity=0.014 Sum_probs=46.8
Q ss_pred HHHHHhhhcCEEEEeCCCcCCcccccccc-cCCCCceEEEcCCceeecCCCccccccHHHHHHHHHHHhhcC
Q 007800 295 FCGEIVESADAYVFVGPIFNDYSSVGYSL-LIKKEKAIIVQPHRVTVGNGPSLGWVFMADFLSALAKKLRKN 365 (589)
Q Consensus 295 ~~~~~l~~aD~vl~lG~~~~~~~~~~~~~-~~~~~~~i~id~d~~~~~~~~~~~~~~~~~~l~~L~~~l~~~ 365 (589)
.+.+.+.+||++|++|+++.-..-.++-. ...+..+|.||.++............+..+++..|.+.|...
T Consensus 386 ~a~~~~~~aDLlLVIGTSL~VyPaA~Lv~~a~~~~p~ViIN~ept~~~~~Dl~l~G~cdevv~~L~~~LGw~ 457 (492)
T 4iao_A 386 SIREDILECDLLICIGTSLKVAPVSEIVNMVPSHVPQVLINRDPVKHAEFDLSLLGYCDDIAAMVAQKCGWT 457 (492)
T ss_dssp HHHHHTTTCSEEEEESCCCCEETGGGHHHHSBTTSCEEEEESSCCTTSCCSEEEESCHHHHHHHHHHHTTCC
T ss_pred HHHHHHhhCCEEEEeccCCCccchhhHHHHHhcCCcEEEEcCCCCCCCCccEEEeCCHHHHHHHHHHHhCCC
Confidence 34566789999999999986555433322 234457888998876321112222346889999999998754
No 109
>1qs0_A 2-oxoisovalerate dehydrogenase alpha-subunit; heterotetramer, THDP cofactor, oxidoreductase; HET: TDP; 2.40A {Pseudomonas putida} SCOP: c.36.1.11 PDB: 2bp7_A
Probab=79.60 E-value=2.8 Score=43.11 Aligned_cols=111 Identities=15% Similarity=-0.049 Sum_probs=64.5
Q ss_pred Hhhhhhhhcc---Cc-eEEEEeCCcchHHH---HHHHHHhhhcCCcEEEEeCCCCccccCCccceeeec-CCCChHHHHH
Q 007800 79 YAADGYARSR---GV-GACVVTFTVGGLSV---LNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTI-GLPDFTQELR 150 (589)
Q Consensus 79 ~~A~gyar~t---g~-~v~~~t~GpG~~n~---~~~l~~A~~~~~PllvI~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 150 (589)
-+|.|.+++. +. .++++..|=|.++. .-++..|..-++|+|+|.-+.... .... ..+.. ...+ ..+
T Consensus 188 p~AvGaA~A~k~~~~~~~vv~i~GDGa~~~G~~~Eal~~A~~~~lpvi~Vv~NN~~g-i~~~--~~~~~~~~~d---~a~ 261 (407)
T 1qs0_A 188 VQAVGWAMASAIKGDTKIASAWIGDGATAESDFHTALTFAHVYRAPVILNVVNNQWA-ISTF--QAIAGGESTT---FAG 261 (407)
T ss_dssp HHHHHHHHHHHHTTCCCCEEEEEETGGGGSHHHHHHHHHHHHHTCCEEEEEEECSEE-TTEE--GGGGTTTTCC---STH
T ss_pred hHHHHHHHHHHHhCCCCEEEEEECCchhhcChHHHHHHHHHHHCcCEEEEEECCCcc-eeec--cccccCCCCC---HHH
Confidence 3555665542 32 44444556666652 356777778899988887543211 1110 01111 1112 233
Q ss_pred hhhcceeEEEEeC--ChhhHHHHHHHHHHHhHhcCCcEEEEeCCCCC
Q 007800 151 CFQAITCSQAVVN--NLGDAHELIDTAISTALKESKPVYISISCNLP 195 (589)
Q Consensus 151 ~~~~~tk~~~~v~--~~~~~~~~l~~A~~~a~~~~gPV~i~iP~dv~ 195 (589)
.++.+--...++. +++++...+++|++.+....||+.|++-..-.
T Consensus 262 ~a~a~G~~~~~VdG~D~~av~~a~~~A~~~ar~~~gP~lIe~~t~R~ 308 (407)
T 1qs0_A 262 RGVGCGIASLRVDGNDFVAVYAASRWAAERARRGLGPSLIEWVTYRA 308 (407)
T ss_dssp HHHHTTCEEEEEETTCHHHHHHHHHHHHHHHHTTSCCEEEEEECCCC
T ss_pred HHHHcCCeEEEEcCCCHHHHHHHHHHHHHHHHhcCCCEEEEEEeecc
Confidence 4444444445555 57788888889988888778999999876543
No 110
>1ik6_A Pyruvate dehydrogenase; E1BETA, tetramer, GXXXG, oxidoreductase; 2.00A {Pyrobaculum aerophilum} SCOP: c.36.1.7 c.48.1.2
Probab=79.13 E-value=5.3 Score=40.49 Aligned_cols=99 Identities=15% Similarity=0.059 Sum_probs=58.4
Q ss_pred hHHHHHHHHhhhcCCCcEEEE-EcchhhcccHHHHHH-HHHh--------CCCeEEEEEeCCchhhhhhhcCCCCCCCCC
Q 007800 443 WSVGATLGYAQAAKDKRVIAC-IGDGSFQVTAQEIST-MIRC--------GQRSIIFLINNGGYTIEVEIHDGPYNVIKN 512 (589)
Q Consensus 443 ~~l~~aiGaala~~~~~vv~i-~GDGsf~~~~~el~t-a~~~--------~l~v~ivv~nN~~~~~~~~~~~~~~~~~~~ 512 (589)
.++++|.|++++. -++++.+ .+|.. +.....|.+ ++.. ++|+++++.+-+..+ ++.. +.
T Consensus 109 ~~v~~a~G~A~~G-~rpv~~~tf~~Fl-~~a~Dqi~~~~a~~~~~~~g~~~~pvv~~~~~gg~~g------~g~~---hs 177 (369)
T 1ik6_A 109 GILGFAMGMAMAG-LKPVAEIQFVDFI-WLGADELLNHIAKLRYRSGGNYKAPLVVRTPVGSGTR------GGLY---HS 177 (369)
T ss_dssp HHHHHHHHHHHTT-CEEEEECCCC-----CCHHHHHHHHHHHHC------CCCCEEEEEECC------------------
T ss_pred HHHHHHHHHHHCC-CeeEEEecchhHH-HHHHHHHHHHHHHHHHhhCCCCCCCEEEEEeCCCCCC------CCcc---cc
Confidence 4567788888863 4555555 88865 345555655 4433 999887776444221 1111 12
Q ss_pred CChHHHHHHc-cCCCCCccEEEeCCHHHHHHHHHHhhhcCCCCeEEEE
Q 007800 513 WDYTGLVNAI-HNGEGKCWTAKVRSEDELTEAMKTATGEQKDSLCFIE 559 (589)
Q Consensus 513 ~d~~~la~a~-G~~~~~~~~~~v~~~~~l~~al~~a~~~~~~gp~vie 559 (589)
..+..+.++. |+ ..+...|+.|+..+++.+++ .++|++|-
T Consensus 178 ~~~~a~l~~iPnl-----~V~~Psd~~e~~~ll~~A~~--~~~Pv~i~ 218 (369)
T 1ik6_A 178 NSPEAIFVHTPGL-----VVVMPSTPYNAKGLLKAAIR--GDDPVVFL 218 (369)
T ss_dssp --HHHHHHTCTTC-----EEECCCSHHHHHHHHHHHHH--SSSCEEEE
T ss_pred ccHHHHHcCCCCc-----EEEecCCHHHHHHHHHHHHh--CCCCEEEE
Confidence 2234455544 44 77777899999999999996 78999883
No 111
>2ozl_A PDHE1-A type I, pyruvate dehydrogenase E1 component alpha subunit, somatic form; pyruvate_dehydrogenase_complex, human, multienzyme_complex_component; HET: TPP; 1.90A {Homo sapiens} SCOP: c.36.1.11 PDB: 1ni4_A* 3exe_A* 3exi_A 3exh_A* 3exg_A 3exf_A*
Probab=78.12 E-value=5 Score=40.59 Aligned_cols=109 Identities=17% Similarity=0.174 Sum_probs=61.7
Q ss_pred Hhhhhhhhcc---Cc-eEEEEeCCcchHHH---HHHHHHhhhcCCcEEEEeCCCCccccCCccceeeecCCCChHHHHHh
Q 007800 79 YAADGYARSR---GV-GACVVTFTVGGLSV---LNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQELRC 151 (589)
Q Consensus 79 ~~A~gyar~t---g~-~v~~~t~GpG~~n~---~~~l~~A~~~~~PllvI~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (589)
-+|.|.+++. |. .++++..|=|+++. .-++..|..-+.|+|+|.-+.... ..+. ..+.....++..
T Consensus 147 p~A~G~A~A~~~~~~~~~vv~~~GDGa~~~G~~~Ealn~A~~~~lpvi~vv~NN~~g-~~t~--~~~~~~~~~~~~---- 219 (365)
T 2ozl_A 147 PLGAGIALACKYNGKDEVCLTLYGDGAANQGQIFEAYNMAALWKLPCIFICENNRYG-MGTS--VERAAASTDYYK---- 219 (365)
T ss_dssp HHHHHHHHHHHHHTCCCCEEEEEETTGGGCHHHHHHHHHHHHTTCCEEEEEEECSEE-TTEE--HHHHCSCCCGGG----
T ss_pred HHHHHHHHHHHhcCCCceEEEEECchhhhccHHHHHHHHHHHHCcCEEEEEECCCcc-cCCC--cccccCCCCHHH----
Confidence 3555665543 33 44555557676663 336677878899999998433211 1110 000000011111
Q ss_pred hhcceeEEEEeC--ChhhHHHHHHHHHHHhHhcCCcEEEEeCCCCC
Q 007800 152 FQAITCSQAVVN--NLGDAHELIDTAISTALKESKPVYISISCNLP 195 (589)
Q Consensus 152 ~~~~tk~~~~v~--~~~~~~~~l~~A~~~a~~~~gPV~i~iP~dv~ 195 (589)
+.+--...++. +++++...+++|+..+....||+.|++...-.
T Consensus 220 -ra~g~p~~~VdG~D~~av~~a~~~A~~~~r~~~gP~lIe~~t~R~ 264 (365)
T 2ozl_A 220 -RGDFIPGLRVDGMDILCVREATRFAAAYCRSGKGPILMELQTYRY 264 (365)
T ss_dssp -TTTTSCEEEEETTCHHHHHHHHHHHHHHHHTTCCCEEEEEECCCS
T ss_pred -HhCCCCEEEEeCCCHHHHHHHHHHHHHHHHhCCCCEEEEEEeecC
Confidence 11111234454 68888899999998888889999999976643
No 112
>1q1a_A HST2 protein; ternary complex, histone deacetylase, 2'-O-ADP ribose,, gene regulation; HET: ALY OAD; 1.50A {Saccharomyces cerevisiae} SCOP: c.31.1.5 PDB: 1szd_A* 1szc_A* 2od7_A* 2od9_A* 2qqf_A* 2qqg_A* 1q17_A* 2od2_A*
Probab=78.00 E-value=1.9 Score=42.23 Aligned_cols=66 Identities=14% Similarity=0.128 Sum_probs=42.6
Q ss_pred HhhhcCEEEEeCCCcCCccccccccc-CCCCceEEEcCCcee-e--c--CCCccccccHHHHHHHHHHHhhc
Q 007800 299 IVESADAYVFVGPIFNDYSSVGYSLL-IKKEKAIIVQPHRVT-V--G--NGPSLGWVFMADFLSALAKKLRK 364 (589)
Q Consensus 299 ~l~~aD~vl~lG~~~~~~~~~~~~~~-~~~~~~i~id~d~~~-~--~--~~~~~~~~~~~~~l~~L~~~l~~ 364 (589)
.+.+||++|++|+++.-.+-..+... ..+.++|.||.++.. . . ........++..+|+.|.+.+..
T Consensus 208 ~~~~~DlllviGTSl~V~Pa~~l~~~~~~~~~~v~IN~~~~~~~~~~~~~~d~~i~~~~~~~l~~l~~~l~~ 279 (289)
T 1q1a_A 208 KHPQQPLVIVVGTSLAVYPFASLPEEIPRKVKRVLCNLETVGDFKANKRPTDLIVHQYSDEFAEQLVEELGW 279 (289)
T ss_dssp --CCCCEEEEESCCCCEETTTHHHHHSCTTSEEEEESSSCCTHHHHSCCTTCEEECCCHHHHHHHHHHHHTC
T ss_pred HhccCCEEEEEccCCChhhHHHHHHHHhcCCCEEEEECCCcccCCCCCcceeEEEeCCHHHHHHHHHHHcCC
Confidence 36789999999999865543333222 236678899988753 1 1 12233345789999999888753
No 113
>1o97_D Electron transferring flavoprotein alpha-subunit; FAD binding; HET: AMP FAD; 1.6A {Methylophilus methylotrophus} SCOP: c.26.2.3 c.31.1.2 PDB: 1o95_D* 1o96_B* 1o94_D* 3clu_D* 3clt_D* 3clr_D* 3cls_D*
Probab=76.96 E-value=2.9 Score=41.54 Aligned_cols=111 Identities=22% Similarity=0.245 Sum_probs=68.0
Q ss_pred CEEEeCcccchhhHHHHHHHHHHHhCCceEEccC--CccCCCCCCCCceeeecCCCCCHHHHHHhhhcCEEEEeCCCcCC
Q 007800 238 PVLVGGPNIRVAKAQKAFIELADATGYPIAIMPS--GKGLVPEHHPHFIGTYWGAVSSSFCGEIVESADAYVFVGPIFND 315 (589)
Q Consensus 238 pviv~G~g~~~~~~~~~l~~lae~~~~Pv~tt~~--~~g~~~~~~pl~~G~~~g~~~~~~~~~~l~~aD~vl~lG~~~~~ 315 (589)
.|+-.|+|....+..+.+.+||+.+|+-|-.|-. ..|.+|.+ +.+|.. | +.+..|++.|++|-+=.
T Consensus 204 ivVsgGRG~~~~e~f~~~~~LA~~Lga~vgaSR~~vd~Gw~~~~--~QVGqT-G--------k~V~P~~lYiA~GISGA- 271 (320)
T 1o97_D 204 FIMSIGRGIGEETNVEQFRELADEAGATLCCSRPIADAGWLPKS--RQVGQS-G--------KVVGSCKLYVAMGISGS- 271 (320)
T ss_dssp EEEEECGGGCSGGGHHHHHHHHHHHTCEEEECHHHHHTTSSCGG--GBBSTT-S--------BCCTTCSEEEEESCCCC-
T ss_pred EEEEcCCccCChHHHHHHHHHHHHhCCceeecHHHHhCCCCChh--hEeecC-c--------eEecccceEEEEeccCc-
Confidence 3444566666666788999999999998877643 23556544 445552 3 23445699999995421
Q ss_pred ccc-ccccccCCCCceEEEcCCceeec-CCCccc-cccHHHHHHHHHHHhh
Q 007800 316 YSS-VGYSLLIKKEKAIIVQPHRVTVG-NGPSLG-WVFMADFLSALAKKLR 363 (589)
Q Consensus 316 ~~~-~~~~~~~~~~~~i~id~d~~~~~-~~~~~~-~~~~~~~l~~L~~~l~ 363 (589)
..+ .++ .....+|-||.|+...= ...-|+ -.|+..++++|.+.++
T Consensus 272 iQHlaGm---~~s~~IVAIN~D~~ApIF~~ADygiVgDl~~vvP~L~~~l~ 319 (320)
T 1o97_D 272 IQHMAGM---KHVPTIIAVNTDPGASIFTIAKYGIVADIFDIEEELKAQLA 319 (320)
T ss_dssp HHHHHHH---TTCSEEEEECSCTTCGGGGTCSEEECSCHHHHHHHHHHHC-
T ss_pred HHHHhhc---ccCCEEEEEeCCCCCCcccccCeEEeeeHHHHHHHHHHHHh
Confidence 111 111 12335778898886421 011222 2489999999998874
No 114
>2ozl_B PDHE1-B, pyruvate dehydrogenase E1 component subunit beta; pyruvate_dehydrogenase_complex, human, multienzyme_complex_component; HET: TPP; 1.90A {Homo sapiens} SCOP: c.36.1.7 c.48.1.2 PDB: 1ni4_B* 3exe_B* 3exf_B* 3exg_B 3exh_B* 3exi_B
Probab=76.93 E-value=4.6 Score=40.52 Aligned_cols=100 Identities=9% Similarity=-0.047 Sum_probs=62.0
Q ss_pred hHHHHHHHHhhhcCCCcEEEE-EcchhhcccHHHHHHHHH---------hCCCeEEEEEeCCchhhhhhhcCCCCCCCCC
Q 007800 443 WSVGATLGYAQAAKDKRVIAC-IGDGSFQVTAQEISTMIR---------CGQRSIIFLINNGGYTIEVEIHDGPYNVIKN 512 (589)
Q Consensus 443 ~~l~~aiGaala~~~~~vv~i-~GDGsf~~~~~el~ta~~---------~~l~v~ivv~nN~~~~~~~~~~~~~~~~~~~ 512 (589)
.++++|.|++++. -++++.+ .+|.. +.....+.+.+- .++|+++++- ++..+- +++. ....
T Consensus 73 ~~v~~a~G~A~~G-~rp~~~~~f~~F~-~~a~dqi~~~~a~~~y~~~g~~~~pvv~~~~-~G~~g~-----~G~t-Hs~~ 143 (341)
T 2ozl_B 73 GFAGIAVGAAMAG-LRPICEFMTFNFS-MQAIDQVINSAAKTYYMSGGLQPVPIVFRGP-NGASAG-----VAAQ-HSQC 143 (341)
T ss_dssp HHHHHHHHHHHTT-CEEEEECSSGGGG-GGGHHHHHTTTTTHHHHTTSSCCCCCEEEEE-CSCCSS-----CCGG-GCCC
T ss_pred HHHHHHHHHHHCC-CEEEEEeccHHHH-HHHHHHHHHHHHHHHhhccccCCCCEEEEEc-CcCCCC-----CCcc-hhhH
Confidence 4567788888863 4555554 77776 444555544331 6899888766 453321 1111 1122
Q ss_pred CChHHHHHHc-cCCCCCccEEEeCCHHHHHHHHHHhhhcCCCCeEEEEE
Q 007800 513 WDYTGLVNAI-HNGEGKCWTAKVRSEDELTEAMKTATGEQKDSLCFIEV 560 (589)
Q Consensus 513 ~d~~~la~a~-G~~~~~~~~~~v~~~~~l~~al~~a~~~~~~gp~viev 560 (589)
++ .+.+.. |. ..+...|+.|+...++.++. .++|++|-.
T Consensus 144 ~e--a~l~~iP~l-----~V~~Psd~~e~~~~l~~a~~--~~~Pv~i~~ 183 (341)
T 2ozl_B 144 FA--AWYGHCPGL-----KVVSPWNSEDAKGLIKSAIR--DNNPVVVLE 183 (341)
T ss_dssp CH--HHHHTSTTC-----EEECCCSHHHHHHHHHHHHH--SSSCEEEEE
T ss_pred HH--HHhccCCCC-----EEEEeCCHHHHHHHHHHHHh--cCCCEEEEE
Confidence 33 333333 44 67777899999999999997 679998754
No 115
>3glr_A NAD-dependent deacetylase sirtuin-3, mitochondria; NAD dependent deacetylase, sirtuin, substrate peptide comple hydrolase, metal-binding; HET: ALY; 1.80A {Homo sapiens} PDB: 3gls_A 3glt_A* 3glu_A 4hd8_A* 4fvt_A*
Probab=75.24 E-value=5 Score=39.01 Aligned_cols=70 Identities=9% Similarity=-0.038 Sum_probs=45.5
Q ss_pred HHHhhhcCEEEEeCCCcCCccccccccc-CCCCceEEEcCCcee-e---cC-CCccccccHHHHHHHHHHHhhcCc
Q 007800 297 GEIVESADAYVFVGPIFNDYSSVGYSLL-IKKEKAIIVQPHRVT-V---GN-GPSLGWVFMADFLSALAKKLRKNT 366 (589)
Q Consensus 297 ~~~l~~aD~vl~lG~~~~~~~~~~~~~~-~~~~~~i~id~d~~~-~---~~-~~~~~~~~~~~~l~~L~~~l~~~~ 366 (589)
.+.+.+||++|++|+++.-++...+-.. ..+..+|.||.++.. . .+ .......++...++.|.+.+...+
T Consensus 192 ~~~~~~aDlllviGTSl~V~Paa~l~~~~~~~~~~v~IN~~~~~~~~~~~~~~d~~~~g~~~~~~~~L~~~lgw~~ 267 (285)
T 3glr_A 192 VVDFPMADLLLILGTSLEVEPFASLTEAVRSSVPRLLINRDLVGPLAWHPRSRDVAQLGDVVHGVESLVELLGWTE 267 (285)
T ss_dssp HHHHHHCSEEEEESCCCCEETTGGGGGSSCTTSCEEEEESSCCTHHHHSCCTTEEEEESCHHHHHHHHHHHHTCHH
T ss_pred HHHHhcCCEEEEeCCCCccccHHHHHHHHhCCCcEEEECCCCcCccccCCCCccEEEcCCHHHHHHHHHHHhCCHH
Confidence 5667899999999999865554333322 234568889988752 1 00 112223467899999999887543
No 116
>1q14_A HST2 protein; histone deacetylase, hydrolase; 2.50A {Saccharomyces cerevisiae} SCOP: c.31.1.5
Probab=74.92 E-value=3.9 Score=41.29 Aligned_cols=66 Identities=14% Similarity=0.121 Sum_probs=42.5
Q ss_pred HhhhcCEEEEeCCCcCCccccccccc-CCCCceEEEcCCcee-e----cCCCccccccHHHHHHHHHHHhhc
Q 007800 299 IVESADAYVFVGPIFNDYSSVGYSLL-IKKEKAIIVQPHRVT-V----GNGPSLGWVFMADFLSALAKKLRK 364 (589)
Q Consensus 299 ~l~~aD~vl~lG~~~~~~~~~~~~~~-~~~~~~i~id~d~~~-~----~~~~~~~~~~~~~~l~~L~~~l~~ 364 (589)
.+.+||++|++|+++.-++-..+... ..+.++|.||.++.. + .........++..+|+.|.+.+..
T Consensus 216 ~~~~aDllLviGTSl~V~Paa~l~~~~~~g~~~v~IN~~~t~~~~~~~~~~d~~i~g~~~evl~~L~~~Lg~ 287 (361)
T 1q14_A 216 KHPQQPLVIVVGTSLAVYPFASLPEEIPRKVKRVLCNLETVGDFKANKRPTDLIVHQYSDEFAEQLVEELGW 287 (361)
T ss_dssp ---CCCEEEEESCCCCSTTGGGHHHHSCTTSEEEEESSSCCHHHHHTCCTTCEEECSCHHHHHHHHHHHHTC
T ss_pred hhccCCEEEEECCCCCchhHHHHHHHHhcCCeEEEEeCCCccccccCcccccEEEeCCHHHHHHHHHHHcCC
Confidence 35689999999999876554443322 236678899988763 1 112233345788999999887764
No 117
>3rim_A Transketolase, TK; TPP, transferase; HET: TPP; 2.49A {Mycobacterium tuberculosis}
Probab=74.37 E-value=11 Score=41.69 Aligned_cols=156 Identities=13% Similarity=0.059 Sum_probs=87.9
Q ss_pred cccHHHHHHHHHHHcCC--CEEEecCCcchHH--H----HHhhhcC-------CC---CeEEe-cCchhHHHHhhhhhhh
Q 007800 26 VGTLGRHLARRLVEIGA--KDVFSVPGDFNLT--L----LDHLIAE-------PE---LNLVG-CCNELNAGYAADGYAR 86 (589)
Q Consensus 26 ~~~~a~~i~~~L~~~GV--~~vfg~pG~~~~~--l----~~al~~~-------~~---i~~v~-~~hE~~A~~~A~gyar 86 (589)
.+...+++.+.|.+..- ..++++-.+-... . ++.+.+. ++ =+++. ..-|++++.+|.|.|.
T Consensus 374 ~~atr~a~~~~L~~l~~~~p~vv~~saDl~~s~~t~~~~~~~f~~~~~~~~~~p~~~~~R~id~GIaE~~mv~~A~GlA~ 453 (700)
T 3rim_A 374 ALATRAASGAVLSALGPKLPELWGGSADLAGSNNTTIKGADSFGPPSISTKEYTAHWYGRTLHFGVREHAMGAILSGIVL 453 (700)
T ss_dssp CEEHHHHHHHHHHHHTTTCTTEEEEESSCHHHHTCSCTTCCEESCGGGCCSSCCEETTCCEEECCSCHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHhhCCCEEEEeCCccCCCCcccccchhhcccccccccCCcccCCceeecCccHHHHHHHHHHHHH
Confidence 45666777777776543 4555553331111 0 1223221 21 25665 4899999999999999
Q ss_pred ccCc-eEEEEeCCcchHHHHHHHHHhhhcCCcEEEEeCCCCccccCCccceeeecCCCChHHHHHhhhcceeE-EEEeCC
Q 007800 87 SRGV-GACVVTFTVGGLSVLNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCFQAITCS-QAVVNN 164 (589)
Q Consensus 87 ~tg~-~v~~~t~GpG~~n~~~~l~~A~~~~~PllvI~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tk~-~~~v~~ 164 (589)
..|. .++. |..+=+.-+.+.+-.+-..+.||+++....... .+.+..-||. ..++.+++.+--. ...+.+
T Consensus 454 ~gG~~Pv~~-tF~~F~d~~~~~ir~~al~~lpvv~v~thdg~g-vG~dG~THq~------ied~a~lr~iPnl~V~~Pad 525 (700)
T 3rim_A 454 HGPTRAYGG-TFLQFSDYMRPAVRLAALMDIDTIYVWTHDSIG-LGEDGPTHQP------IEHLSALRAIPRLSVVRPAD 525 (700)
T ss_dssp HSSCEEEEE-EEGGGGGGGHHHHHHHHHHTCCCEEEEECCSGG-GCTTCTTTSC------SSHHHHHHTSTTCEEECCSS
T ss_pred cCCCEEEEE-ecHHHHHHHHHHHHHhcCCCCCEEEEEeCCCcc-cCCCCCccCC------hhHHHHHhcCCCCEEEeCCC
Confidence 8665 5554 333222334566777778899998886322221 2222122322 2346777776543 344556
Q ss_pred hhhHHHHHHHHHHHhHhcC---CcEEEEeCCC
Q 007800 165 LGDAHELIDTAISTALKES---KPVYISISCN 193 (589)
Q Consensus 165 ~~~~~~~l~~A~~~a~~~~---gPV~i~iP~d 193 (589)
+.++..+++. |...+ |||+|.+|..
T Consensus 526 ~~e~~~~l~~----Ai~~~~~~~Pv~ir~~r~ 553 (700)
T 3rim_A 526 ANETAYAWRT----ILARRNGSGPVGLILTRQ 553 (700)
T ss_dssp HHHHHHHHHH----HHTTTTCSSCEEEECCSS
T ss_pred HHHHHHHHHH----HHHccCCCCCEEEEeccc
Confidence 6666555554 44443 7999998864
No 118
>1j8f_A SIRT2, sirtuin 2, isoform 1, silencing INFO; gene regulation, transferase; 1.70A {Homo sapiens} SCOP: c.31.1.5
Probab=72.63 E-value=3.6 Score=40.92 Aligned_cols=71 Identities=8% Similarity=-0.070 Sum_probs=44.7
Q ss_pred HHHHHhhhcCEEEEeCCCcCCcccccccccC-CCCceEEEcCCceeecC---------------------CCccccccHH
Q 007800 295 FCGEIVESADAYVFVGPIFNDYSSVGYSLLI-KKEKAIIVQPHRVTVGN---------------------GPSLGWVFMA 352 (589)
Q Consensus 295 ~~~~~l~~aD~vl~lG~~~~~~~~~~~~~~~-~~~~~i~id~d~~~~~~---------------------~~~~~~~~~~ 352 (589)
.+.+.+.+||++|++|+++.-.+-..+-... .+...|.||.++..... .......|+.
T Consensus 213 ~a~~~~~~aDlllviGTSl~V~P~a~l~~~~~~~~~~v~IN~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~gd~~ 292 (323)
T 1j8f_A 213 CMQSDFLKVDLLLVMGTSLQVQPFASLISKAPLSTPRLLINKEKAGQSDPFLGMIMGLGGGMDFDSKKAYRDVAWLGECD 292 (323)
T ss_dssp HHHHGGGSCSEEEEESSCSCSHHHHHHHTTSCTTCCEEEEESSCCCCCCHHHHHHHHHHTCCCSSSTTCCSEEEEESCHH
T ss_pred HHHHHHhCCCEEEEEeeCcccHHHHHHHHHHHcCCcEEEEeCCCCCCCcccccccccccccccccccccceeEEEeCCHH
Confidence 3556778999999999998765433332222 23456778877654310 0112234788
Q ss_pred HHHHHHHHHhhcC
Q 007800 353 DFLSALAKKLRKN 365 (589)
Q Consensus 353 ~~l~~L~~~l~~~ 365 (589)
+++..|.+.+...
T Consensus 293 ~~l~~L~~~lgw~ 305 (323)
T 1j8f_A 293 QGCLALAELLGWK 305 (323)
T ss_dssp HHHHHHHHHTTCH
T ss_pred HHHHHHHHHcCCc
Confidence 9999998888643
No 119
>1efv_A Electron transfer flavoprotein; electron transport, glutaric acidemia type II; HET: FAD AMP; 2.10A {Homo sapiens} SCOP: c.26.2.3 c.31.1.2 PDB: 2a1u_A* 1t9g_R* 2a1t_R*
Probab=71.97 E-value=7.3 Score=38.49 Aligned_cols=112 Identities=17% Similarity=0.253 Sum_probs=68.1
Q ss_pred CEEEeCcccchhhHHHHHHHHHHHhCCceEEccC--CccCCCCCCCCceeeecCCCCCHHHHHHhhhcCEEEEeCCCcCC
Q 007800 238 PVLVGGPNIRVAKAQKAFIELADATGYPIAIMPS--GKGLVPEHHPHFIGTYWGAVSSSFCGEIVESADAYVFVGPIFND 315 (589)
Q Consensus 238 pviv~G~g~~~~~~~~~l~~lae~~~~Pv~tt~~--~~g~~~~~~pl~~G~~~g~~~~~~~~~~l~~aD~vl~lG~~~~~ 315 (589)
.|+-.|+|....+..+.+.+||+.+|+-|-.|-. ..|.+|.+ +.+|.. |.. =.+++.|++|-+=.-
T Consensus 199 ivVsgGrG~~~~e~f~~~~~LA~~Lga~vgaSR~~vd~Gw~~~~--~QVGqT-Gk~---------V~P~lYiA~GISGAi 266 (315)
T 1efv_A 199 VVVSGGRGLKSGENFKLLYDLADQLHAAVGASRAAVDAGFVPND--MQVGQT-GKI---------VAPELYIAVGISGAI 266 (315)
T ss_dssp EEEEECGGGCSTGGGHHHHHHHHHHTCEEEECHHHHHTTSSCGG--GBBSTT-SBC---------CCCSEEEEESCCCCH
T ss_pred EEEEcCCcCCChHHHHHHHHHHHHhCCceeecHHHHhCCCCCHH--heeccC-Ccc---------cCcceEEEecccCcH
Confidence 4555666666656778999999999998877643 23556544 445552 321 257999999954211
Q ss_pred cccccccccCCCCceEEEcCCceeec-CCCccc-cccHHHHHHHHHHHhhc
Q 007800 316 YSSVGYSLLIKKEKAIIVQPHRVTVG-NGPSLG-WVFMADFLSALAKKLRK 364 (589)
Q Consensus 316 ~~~~~~~~~~~~~~~i~id~d~~~~~-~~~~~~-~~~~~~~l~~L~~~l~~ 364 (589)
--..++ .....+|-||.|+...= ...-|+ -.|+..++++|.+.++.
T Consensus 267 QHlaGm---~~s~~IVAIN~D~~ApIf~~ADygiVgDl~~v~P~L~~~l~~ 314 (315)
T 1efv_A 267 QHLAGM---KDSKTIVAINKDPEAPIFQVADYGIVADLFKVVPEMTEILKK 314 (315)
T ss_dssp HHHTTT---TTCSEEEEEESCTTCGGGGTCSEEEESCHHHHHHHHHHHTC-
T ss_pred HHHhhc---ccCCEEEEEeCCCCCCcchhcCeEEeeeHHHHHHHHHHHHhc
Confidence 101111 12335778898886421 011222 24899999999998853
No 120
>1qs0_B 2-oxoisovalerate dehydrogenase beta-subunit; heterotetramer, THDP cofactor, oxidoreductase; HET: TDP; 2.40A {Pseudomonas putida} SCOP: c.36.1.7 c.48.1.2 PDB: 2bp7_B
Probab=71.36 E-value=8 Score=38.62 Aligned_cols=101 Identities=14% Similarity=0.046 Sum_probs=61.5
Q ss_pred hHHHHHHHHhhhcCCCcEEEE-EcchhhcccHHHHHH-HH--H------hCCCeEEEEEeCCchhhhhhhcCCCCCCCCC
Q 007800 443 WSVGATLGYAQAAKDKRVIAC-IGDGSFQVTAQEIST-MI--R------CGQRSIIFLINNGGYTIEVEIHDGPYNVIKN 512 (589)
Q Consensus 443 ~~l~~aiGaala~~~~~vv~i-~GDGsf~~~~~el~t-a~--~------~~l~v~ivv~nN~~~~~~~~~~~~~~~~~~~ 512 (589)
.++++|.|++++. -++++.+ .+|+. +.....|.+ ++ + .++|+++++- +++ +. ++.- .-..
T Consensus 63 ~~~~~a~G~A~~G-~rp~~~~t~~~F~-~~a~dqi~~~~a~~~~~~~~~~~~pvv~~~~-~~g-~~-----~G~t-h~s~ 132 (338)
T 1qs0_B 63 GIVGTAVGMGAYG-LRPVVEIQFADYF-YPASDQIVSEMARLRYRSAGEFIAPLTLRMP-CGG-GI-----YGGQ-THSQ 132 (338)
T ss_dssp HHHHHHHHHHHHT-CEEEEECSCGGGC-GGGHHHHHTTTTTHHHHTTTSSCCCCEEEEE-ECC-SS-----SCCS-SSSC
T ss_pred HHHHHHHHHHhCC-CEEEEEeccHhHH-HHHHHHHHHHHHHHhhhcCCCCCCCEEEEEe-CCC-CC-----CCcc-cccc
Confidence 4667788888873 3444444 77775 344555543 22 2 3699887764 343 21 1111 1012
Q ss_pred CChHHHHHHccCCCCCccEEEeCCHHHHHHHHHHhhhcCCCCeEEEEE
Q 007800 513 WDYTGLVNAIHNGEGKCWTAKVRSEDELTEAMKTATGEQKDSLCFIEV 560 (589)
Q Consensus 513 ~d~~~la~a~G~~~~~~~~~~v~~~~~l~~al~~a~~~~~~gp~viev 560 (589)
.|..-+..--|+ ..+...|+.|+...++.+++ .++|++|-.
T Consensus 133 ~d~~~l~~iP~l-----~V~~Psd~~e~~~~l~~A~~--~~~Pv~i~~ 173 (338)
T 1qs0_B 133 SPEAMFTQVCGL-----RTVMPSNPYDAKGLLIASIE--CDDPVIFLE 173 (338)
T ss_dssp CCHHHHTTSTTC-----EEECCCSHHHHHHHHHHHHH--SSSCEEEEE
T ss_pred cHHHHHhcCCCC-----EEEeeCCHHHHHHHHHHHHh--cCCcEEEEE
Confidence 255444432366 77888999999999999997 689999843
No 121
>1umd_A E1-alpha, 2-OXO acid dehydrogenase alpha subunit; alpha(2)beta(2) tetramer, structural genomics; HET: TDP; 1.90A {Thermus thermophilus} SCOP: c.36.1.11 PDB: 1um9_A* 1umc_A* 1umb_A*
Probab=67.15 E-value=14 Score=37.33 Aligned_cols=98 Identities=16% Similarity=0.159 Sum_probs=54.6
Q ss_pred eEEEEeCCcchHHH--H-HHHHHhhhcCCcEEEEeCCCCccccCCccceeeecCCCChHHHHHhhhcceeEEEEeC--Ch
Q 007800 91 GACVVTFTVGGLSV--L-NAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCFQAITCSQAVVN--NL 165 (589)
Q Consensus 91 ~v~~~t~GpG~~n~--~-~~l~~A~~~~~PllvI~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tk~~~~v~--~~ 165 (589)
..+++..|=|.++. + -++..|..-+.|+|+|.-+.... .... ........+ ...+++.+--...++. ++
T Consensus 167 ~~vv~i~GDGa~~~G~~~Eal~~A~~~~lpvi~vv~NN~~g-i~~~--~~~~~~~~d---~~~~a~a~G~~~~~Vdg~d~ 240 (367)
T 1umd_A 167 QVAVCTFGDGATSEGDWYAGINFAAVQGAPAVFIAENNFYA-ISVD--YRHQTHSPT---IADKAHAFGIPGYLVDGMDV 240 (367)
T ss_dssp CCEEEEEETGGGGSHHHHHHHHHHHHTTCSEEEEEEECSEE-TTEE--HHHHCSSSC---SGGGGGGTTSCEEEEETTCH
T ss_pred CeEEEEEcccccccCcHHHHHHHHHHhCcCEEEEEecCCee-eccC--hhhccCCCC---HHHHHHHcCCcEEEeCCCCH
Confidence 33444446665542 2 24777888899988888654421 1110 000011112 2344444332333443 45
Q ss_pred hhHHHHHHHHHHHhHhcCCcEEEEeCCCC
Q 007800 166 GDAHELIDTAISTALKESKPVYISISCNL 194 (589)
Q Consensus 166 ~~~~~~l~~A~~~a~~~~gPV~i~iP~dv 194 (589)
..+...+++|++.+....||+.|++-..-
T Consensus 241 ~av~~a~~~A~~~a~~~~gP~lIe~~t~r 269 (367)
T 1umd_A 241 LASYYVVKEAVERARRGEGPSLVELRVYR 269 (367)
T ss_dssp HHHHHHHHHHHHHHHTTCCCEEEEEECCC
T ss_pred HHHHHHHHHHHHHHHhcCCCEEEEEEeec
Confidence 56677788888888777899999987654
No 122
>3c2q_A Uncharacterized conserved protein; putative LOR/SDH, structural genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis S2}
Probab=64.80 E-value=2.5 Score=41.27 Aligned_cols=101 Identities=16% Similarity=0.138 Sum_probs=63.6
Q ss_pred HHHHHhCCceEEccCCccCCCCCCCCceeeecCCCCCHHHHHHhhhcCEEEEeCCCcCCcccccccccCCCCceEEEcCC
Q 007800 257 ELADATGYPIAIMPSGKGLVPEHHPHFIGTYWGAVSSSFCGEIVESADAYVFVGPIFNDYSSVGYSLLIKKEKAIIVQPH 336 (589)
Q Consensus 257 ~lae~~~~Pv~tt~~~~g~~~~~~pl~~G~~~g~~~~~~~~~~l~~aD~vl~lG~~~~~~~~~~~~~~~~~~~~i~id~d 336 (589)
--|-+.++|++-. |.+-.|-||.==..+-.-......+.++++|+||.+.+.+-...+++.. +...++++||++
T Consensus 232 y~cvk~~VPfVLA----GSIRDDGPLPdvitdv~~AQ~~mr~~~~~a~~vimlaTmLHSIAtGNm~--Ps~v~~~cVDIn 305 (345)
T 3c2q_A 232 YQCIKNNIPYVLA----GSIRDDGPIPDVITDSMVAQDKMRTTVMDKKMVIMLSTLLHSVATGNLM--PSYIKTVCVDIQ 305 (345)
T ss_dssp HHHHHTTCCEEEE----CCTTCSSCCTTCBCBHHHHHHHHHHHHTTCSEEEEESCHHHHHHHHTTC--CTTSEEEEEESC
T ss_pred HHHHhCCCCEEEE----eeccCCCCCCcccccHHHHHHHHHHHhccCCchHHHHHHHHHHHhcccC--cccceEEEEECC
Confidence 3455789998874 4455666653110000012234455678999999999988777776644 334579999999
Q ss_pred ceeecC----CC--cccc-ccHHHHHHHHHHHhh
Q 007800 337 RVTVGN----GP--SLGW-VFMADFLSALAKKLR 363 (589)
Q Consensus 337 ~~~~~~----~~--~~~~-~~~~~~l~~L~~~l~ 363 (589)
+..+.+ .. ..+- .|+.+||..|.+.|.
T Consensus 306 p~~VtKL~DRGs~qa~giVTdvg~Fl~~L~~~L~ 339 (345)
T 3c2q_A 306 PSTVTKLMDRGTSQAIGVVTDVGVFLVLLLKELE 339 (345)
T ss_dssp HHHHHHHHHTCCSSEEEEESCHHHHHHHHHHHHH
T ss_pred HHHhhhhhccCceeEEEEEecHHHHHHHHHHHHH
Confidence 876531 11 1111 388999999988775
No 123
>3u31_A SIR2A, transcriptional regulatory protein SIR2 homologue; Zn-binding domain, rossmann fold domain; HET: MYK NAD; 2.20A {Plasmodium falciparum} PDB: 3u3d_A* 3jwp_A*
Probab=61.64 E-value=5.5 Score=38.88 Aligned_cols=46 Identities=13% Similarity=0.169 Sum_probs=31.8
Q ss_pred HHHHHhhhcCEEEEeCCCcCCccccccccc--CCCCceEEEcCCceee
Q 007800 295 FCGEIVESADAYVFVGPIFNDYSSVGYSLL--IKKEKAIIVQPHRVTV 340 (589)
Q Consensus 295 ~~~~~l~~aD~vl~lG~~~~~~~~~~~~~~--~~~~~~i~id~d~~~~ 340 (589)
.+.+.+.+||++|++|+++.-.+-..+-.. ..+.++|.||.++...
T Consensus 209 ~a~~~~~~aDllLviGTSl~V~Paa~l~~~a~~~g~~~v~IN~~~t~~ 256 (290)
T 3u31_A 209 EAEEEIAKCDLLLVIGTSSTVSTATNLCHFACKKKKKIVEINISKTYI 256 (290)
T ss_dssp HHHHHHHHCSEEEEESCCSCSHHHHHHHHHHHHTTCCEEEEESSCCTT
T ss_pred HHHHHHhcCCEEEEECcCCcchhHHHHHHHHHHcCCEEEEECCCCCCC
Confidence 455677899999999998865543332222 2456899999887644
No 124
>1umd_B E1-beta, 2-OXO acid dehydrogenase beta subunit; alpha(2)beta(2) tetramer, structural genomics; HET: TDP; 1.90A {Thermus thermophilus} SCOP: c.36.1.7 c.48.1.2 PDB: 1um9_B* 1umc_B* 1umb_B*
Probab=61.04 E-value=19 Score=35.63 Aligned_cols=98 Identities=13% Similarity=0.064 Sum_probs=59.8
Q ss_pred hHHHHHHHHhhhcCCCcEEEE-EcchhhcccHHHHHH-HHH--------hCCCeEEEEEeCCchhhhhhhcCCCCCCCCC
Q 007800 443 WSVGATLGYAQAAKDKRVIAC-IGDGSFQVTAQEIST-MIR--------CGQRSIIFLINNGGYTIEVEIHDGPYNVIKN 512 (589)
Q Consensus 443 ~~l~~aiGaala~~~~~vv~i-~GDGsf~~~~~el~t-a~~--------~~l~v~ivv~nN~~~~~~~~~~~~~~~~~~~ 512 (589)
.++++|.|++++. -++++.+ .++.. +.....+.+ ++. .++|+++++- .+++.. +++. . ..
T Consensus 62 ~~v~~a~G~A~~G-~~p~~~~t~~~F~-~~a~dqi~~~~a~~~~~~~g~~~~pvv~~~~--~g~~~~----~g~~-h-s~ 131 (324)
T 1umd_B 62 AIVGAALGMAAHG-LRPVAEIQFADYI-FPGFDQLVSQVAKLRYRSGGQFTAPLVVRMP--SGGGVR----GGHH-H-SQ 131 (324)
T ss_dssp HHHHHHHHHHHHT-CEEEEECSSGGGC-GGGHHHHHHTTTTHHHHTTTSSCCCCEEEEE--ECSSSS----CGGG-S-SC
T ss_pred HHHHHHHHHHHCC-CEEEEEeccHhHH-HHHHHHHHHHHHHHHhhcCCCCcCCEEEEEc--CCCCCC----CCCc-c-ch
Confidence 4567788888873 3455544 67764 334444543 222 5888777654 333221 1111 0 12
Q ss_pred CChHHHHHHc-cCCCCCccEEEeCCHHHHHHHHHHhhhcCCCCeEEE
Q 007800 513 WDYTGLVNAI-HNGEGKCWTAKVRSEDELTEAMKTATGEQKDSLCFI 558 (589)
Q Consensus 513 ~d~~~la~a~-G~~~~~~~~~~v~~~~~l~~al~~a~~~~~~gp~vi 558 (589)
.|. .+.+.+ |. ..+...|+.|+...++++++ .++|++|
T Consensus 132 ~~~-a~~~~iP~~-----~V~~P~d~~e~~~~l~~a~~--~~~Pv~i 170 (324)
T 1umd_B 132 SPE-AHFVHTAGL-----KVVAVSTPYDAKGLLKAAIR--DEDPVVF 170 (324)
T ss_dssp CCH-HHHHTSTTC-----EEEECCSHHHHHHHHHHHHH--CSSCEEE
T ss_pred hHH-HHHhcCCCC-----EEEEeCCHHHHHHHHHHHHh--cCCCEEE
Confidence 243 555555 44 77888899999999999996 7889988
No 125
>1w85_B Pyruvate dehydrogenase E1 component, beta subunit; dehydrogenase, multienzyme complex, oxidoreductase; HET: TDP; 2.0A {Geobacillus stearothermophilus} SCOP: c.36.1.7 c.48.1.2 PDB: 1w88_B* 3dva_B* 3dv0_B* 3duf_B*
Probab=59.99 E-value=15 Score=36.39 Aligned_cols=99 Identities=13% Similarity=-0.057 Sum_probs=59.0
Q ss_pred hHHHHHHHHhhhcCCCcEEEE-EcchhhcccHHHHHH-HHH--------hCCCeEEEEEeCCchhhhhhhcCCCCCCCCC
Q 007800 443 WSVGATLGYAQAAKDKRVIAC-IGDGSFQVTAQEIST-MIR--------CGQRSIIFLINNGGYTIEVEIHDGPYNVIKN 512 (589)
Q Consensus 443 ~~l~~aiGaala~~~~~vv~i-~GDGsf~~~~~el~t-a~~--------~~l~v~ivv~nN~~~~~~~~~~~~~~~~~~~ 512 (589)
.++++|.|++++. -++++.+ .+++. +.....+.+ ++. .++|+++++ + .+++.. +++. . ..
T Consensus 61 ~~v~~a~G~A~~G-~rp~~~~t~~~F~-~~a~dqi~~~~a~~~~~~~g~~~~pvv~~~-~-~g~~~~----~g~~-h-s~ 130 (324)
T 1w85_B 61 GIGGLAIGLALQG-FRPVPEIQFFGFV-YEVMDSICGQMARIRYRTGGRYHMPITIRS-P-FGGGVH----TPEL-H-SD 130 (324)
T ss_dssp HHHHHHHHHHHTT-CEEEEBCSSGGGG-GGTHHHHHTTGGGHHHHTTTSSCCCCEEEE-E-ECSSSC----CCTT-S-SC
T ss_pred HHHHHHHHHHhCC-CEEEEEecchhHH-HHHHHHHHHHHHHHhhhccCCCcCCEEEEE-e-ccCCCC----CCCc-c-cc
Confidence 5677888888872 3444444 66665 334444432 332 688877664 3 343321 1111 1 12
Q ss_pred CChHHHHHHc-cCCCCCccEEEeCCHHHHHHHHHHhhhcCCCCeEEEE
Q 007800 513 WDYTGLVNAI-HNGEGKCWTAKVRSEDELTEAMKTATGEQKDSLCFIE 559 (589)
Q Consensus 513 ~d~~~la~a~-G~~~~~~~~~~v~~~~~l~~al~~a~~~~~~gp~vie 559 (589)
.|. .+.+++ |. ..+...|+.|+...++++++ .++|++|-
T Consensus 131 ~~~-a~~~~iP~l-----~V~~Psd~~e~~~~l~~a~~--~~~Pv~i~ 170 (324)
T 1w85_B 131 SLE-GLVAQQPGL-----KVVIPSTPYDAKGLLISAIR--DNDPVIFL 170 (324)
T ss_dssp CCH-HHHTTSTTC-----EEECCSSHHHHHHHHHHHHH--SSSCEEEE
T ss_pred cHH-HHHccCCCC-----EEEeeCCHHHHHHHHHHHHH--cCCCEEEE
Confidence 233 444444 34 66777899999999999996 77899883
No 126
>1efp_A ETF, protein (electron transfer flavoprotein); electron transport, glutaric acidemia type II; HET: FAD AMP; 2.60A {Paracoccus denitrificans} SCOP: c.26.2.3 c.31.1.2
Probab=57.67 E-value=16 Score=35.92 Aligned_cols=110 Identities=20% Similarity=0.226 Sum_probs=65.7
Q ss_pred CEEEeCcccchhhHHHHHHHHHHHhCCceEEccC--CccCCCCCCCCceeeecCCCCCHHHHHHhhhcCEEEEeCCCcCC
Q 007800 238 PVLVGGPNIRVAKAQKAFIELADATGYPIAIMPS--GKGLVPEHHPHFIGTYWGAVSSSFCGEIVESADAYVFVGPIFND 315 (589)
Q Consensus 238 pviv~G~g~~~~~~~~~l~~lae~~~~Pv~tt~~--~~g~~~~~~pl~~G~~~g~~~~~~~~~~l~~aD~vl~lG~~~~~ 315 (589)
.|+-.|+|....+..+.+.+||+.+|+-|-.|-. ..|.+|.+ +.+|.. |.. =.+++.|++|-+=.-
T Consensus 194 ivVsgGRG~~~~e~f~~~~~LA~~Lga~vgaSR~~vd~Gw~~~~--~QVGqT-Gk~---------V~P~lYiA~GISGAi 261 (307)
T 1efp_A 194 RVVSGGRGLGSKESFAIIEELADKLGAAVGASRAAVDSGYAPND--WQVGQT-GKV---------VAPELYVAVGISGAI 261 (307)
T ss_dssp EEEEECGGGCSSSTTHHHHHHHHHHTCEEEECHHHHHTTSSCGG--GBBSSS-SBC---------CCCSEEEEESCCCCH
T ss_pred EEEEcCCcCCCHHHHHHHHHHHHHhCCceeecHHHHhCCCCChh--hEeccC-Ccc---------cCCceEEEEeccCcH
Confidence 3444566666556678999999999998877643 23556544 445652 322 257999999954211
Q ss_pred cccccccccCCCCceEEEcCCceeec-CCCccc-cccHHHHHHHHHHHh
Q 007800 316 YSSVGYSLLIKKEKAIIVQPHRVTVG-NGPSLG-WVFMADFLSALAKKL 362 (589)
Q Consensus 316 ~~~~~~~~~~~~~~~i~id~d~~~~~-~~~~~~-~~~~~~~l~~L~~~l 362 (589)
--..++ .....+|-||.|+...= ...-|+ -.|+..++++|.+.+
T Consensus 262 QHlaGm---~~s~~IVAIN~D~~ApIF~~ADygiVgDl~~v~P~L~~~l 307 (307)
T 1efp_A 262 QHLAGM---KDSKVIVAINKDEEAPIFQIADYGLVGDLFSVVPELTGKL 307 (307)
T ss_dssp HHHTTT---TTCSEEEEEESCTTCGGGGTCSEEEESCHHHHHHHHHHTC
T ss_pred HHHhhh---ccCCEEEEEeCCCCCCcccccCeEEeeeHHHHHHHHHhhC
Confidence 101111 12335778898886421 011222 238899999987753
No 127
>3jx9_A Putative phosphoheptose isomerase; YP_001815198.1, structura genomics, joint center for structural genomics, JCSG; HET: MSE; 1.95A {Exiguobacterium sibiricum 255-15}
Probab=56.88 E-value=44 Score=29.55 Aligned_cols=90 Identities=18% Similarity=0.069 Sum_probs=51.8
Q ss_pred cccHHHHHHHHHHHcCCCEEEecCCcchHHHHHhhhcCCCCeEEecCchhHHHHhhhhhhhccCceEEEEeCCcchHH-H
Q 007800 26 VGTLGRHLARRLVEIGAKDVFSVPGDFNLTLLDHLIAEPELNLVGCCNELNAGYAADGYARSRGVGACVVTFTVGGLS-V 104 (589)
Q Consensus 26 ~~~~a~~i~~~L~~~GV~~vfg~pG~~~~~l~~al~~~~~i~~v~~~hE~~A~~~A~gyar~tg~~v~~~t~GpG~~n-~ 104 (589)
....|+.|++.+..-|+=|+||. |..-.-..+++.+..++.-+...-+ ....+..=++++.|-.|-.. .
T Consensus 24 I~~AA~llaqai~~~g~IyvfG~-Ghs~~~~~e~~~~~e~l~~~~~~~~---------~~~i~~~D~vii~S~Sg~n~~~ 93 (170)
T 3jx9_A 24 LFDVVRLLAQALVGQGKVYLDAY-GEFEGLYPMLSDGPDQMKRVTKIKD---------HKTLHAVDRVLIFTPDTERSDL 93 (170)
T ss_dssp HHHHHHHHHHHHHTTCCEEEEEC-GGGGGGTHHHHTSTTCCTTEEECCT---------TCCCCTTCEEEEEESCSCCHHH
T ss_pred HHHHHHHHHHHHhCCCEEEEECC-CcHHHHHHHHHcccCCccchhhhhh---------cCCCCCCCEEEEEeCCCCCHHH
Confidence 34678999999999999999997 5443333345544322211111111 11333332222233334333 4
Q ss_pred HHHHHHhhhcCCcEEEEeCCC
Q 007800 105 LNAIAGAYSENLPVICIVGGP 125 (589)
Q Consensus 105 ~~~l~~A~~~~~PllvI~g~~ 125 (589)
+--...|...++|+|.||...
T Consensus 94 ie~A~~ake~G~~vIaITs~~ 114 (170)
T 3jx9_A 94 LASLARYDAWHTPYSIITLGD 114 (170)
T ss_dssp HHHHHHHHHHTCCEEEEESSC
T ss_pred HHHHHHHHHCCCcEEEEeCcc
Confidence 455566888999999999843
No 128
>2bfd_B 2-oxoisovalerate dehydrogenase beta subunit; oxidoreductase, multi-enzyme complex, acylation, oxidative decarboxylation, maple syrup urine disease; HET: TDP; 1.39A {Homo sapiens} SCOP: c.36.1.7 c.48.1.2 PDB: 1dtw_B* 1olu_B* 1ols_B* 1v11_B* 1v16_B* 1v1m_B* 1u5b_B* 1wci_B* 1v1r_B* 1x7x_B* 1x7w_B* 1x7z_B* 1x80_B* 2beu_B* 2bev_B* 2bew_B* 2bfb_B* 2bfc_B* 1x7y_B* 2bfe_B* ...
Probab=56.85 E-value=18 Score=36.00 Aligned_cols=99 Identities=14% Similarity=0.004 Sum_probs=58.8
Q ss_pred hHHHHHHHHhhhcCCCcEEEE-EcchhhcccHHHHH-HHH--Hh------CC-CeEEEEEeCCchhhhhhhcCCCCCCCC
Q 007800 443 WSVGATLGYAQAAKDKRVIAC-IGDGSFQVTAQEIS-TMI--RC------GQ-RSIIFLINNGGYTIEVEIHDGPYNVIK 511 (589)
Q Consensus 443 ~~l~~aiGaala~~~~~vv~i-~GDGsf~~~~~el~-ta~--~~------~l-~v~ivv~nN~~~~~~~~~~~~~~~~~~ 511 (589)
.++++|.|++++. -++++.+ .+|+.. .....+. .++ ++ +. |+++++-. ++. . ++. +.-.
T Consensus 78 ~~v~~a~G~A~~G-~rp~~~~tf~~F~~-~a~dqi~~~~a~~~~~~~g~~~~~pvv~~~~~-~g~-~-----~G~-th~~ 147 (342)
T 2bfd_B 78 GIVGFGIGIAVTG-ATAIAEIQFADYIF-PAFDQIVNEAAKYRYRSGDLFNCGSLTIRSPW-GCV-G-----HGA-LYHS 147 (342)
T ss_dssp HHHHHHHHHHHTT-CCEEEECSSGGGCG-GGHHHHHTTGGGHHHHTTTSSCCTTEEEEEEE-SCC-S-----SCG-GGSS
T ss_pred HHHHHHHHHHHCC-CeeEEEecchhHHH-HHHHHHHHHHHHHHhhhcCCccCCCEEEEEec-CCC-C-----CCc-chhh
Confidence 4677888888873 4555544 777743 3333333 222 12 44 98887553 321 1 110 0002
Q ss_pred CCChHHHHHHc-cCCCCCccEEEeCCHHHHHHHHHHhhhcCCCCeEEEE
Q 007800 512 NWDYTGLVNAI-HNGEGKCWTAKVRSEDELTEAMKTATGEQKDSLCFIE 559 (589)
Q Consensus 512 ~~d~~~la~a~-G~~~~~~~~~~v~~~~~l~~al~~a~~~~~~gp~vie 559 (589)
..|..-+ +++ |. ..+...|+.|....++.++. .++|++|-
T Consensus 148 ~~d~~~l-~~iP~l-----~V~~Psd~~e~~~~l~~a~~--~~~Pv~i~ 188 (342)
T 2bfd_B 148 QSPEAFF-AHCPGI-----KVVIPRSPFQAKGLLLSCIE--DKNPCIFF 188 (342)
T ss_dssp CCCHHHH-HTSTTC-----EEECCSSHHHHHHHHHHHHH--SSSCEEEE
T ss_pred HhHHHHH-hcCCCc-----EEEeeCCHHHHHHHHHHHHh--cCCcEEEE
Confidence 2355444 444 55 77777899999999999996 68999983
No 129
>3i9v_3 NADH-quinone oxidoreductase subunit 3; electron transport, respiratory chain, cell flavoprotein, FMN, iron, iron-sulfur, membrane; HET: FMN; 3.10A {Thermus thermophilus} PDB: 2ybb_3* 2fug_3* 3iam_3* 3ias_3* 3m9s_3*
Probab=54.31 E-value=19 Score=40.46 Aligned_cols=81 Identities=19% Similarity=-0.029 Sum_probs=48.4
Q ss_pred hHHHHHHHHHHHHHhcC--CCEEEeCcccchhhHHHHHHHHHHHhCCceEEccCCccCCCCCCCCceeeecCCCCCHHHH
Q 007800 220 GLEAAVEATADFLNKAV--KPVLVGGPNIRVAKAQKAFIELADATGYPIAIMPSGKGLVPEHHPHFIGTYWGAVSSSFCG 297 (589)
Q Consensus 220 ~~~~~i~~~~~~L~~a~--rpviv~G~g~~~~~~~~~l~~lae~~~~Pv~tt~~~~g~~~~~~pl~~G~~~g~~~~~~~~ 297 (589)
.-+++++.+++.|++.+ ...++.|.... .+..-.+.+|+..+|.+.+.......... .+ ..+. ..
T Consensus 321 SWdeAl~~ia~~L~~i~~~~i~~~~s~~~t-~E~~~~~~kl~~~lGt~n~d~~~~~~~~~------~~----~~~~-~~- 387 (783)
T 3i9v_3 321 TWEEAFLALKEGLKEARGEEVGLYLAHDAT-LEEGLLASELAKALKTPHLDFQGRTAAPA------SL----FPPA-SL- 387 (783)
T ss_dssp CHHHHHHHHHHHHHTCCTTSEEEEECTTCC-TTHHHHHHHHHHHTTCSCEEETTCCSSCG------GG----SCBC-CH-
T ss_pred CHHHHHHHHHHHHHhhccCCEEEEECCCCC-HHHHHHHHHHHHHhCCCcccCCchhhhhh------cc----CCCC-CH-
Confidence 35678899999998764 34444444433 34556789999999987765332111100 01 1111 12
Q ss_pred HHhhhcCEEEEeCCCcC
Q 007800 298 EIVESADAYVFVGPIFN 314 (589)
Q Consensus 298 ~~l~~aD~vl~lG~~~~ 314 (589)
.-+.++|+||++| .+.
T Consensus 388 ~di~~ad~Il~~G-Np~ 403 (783)
T 3i9v_3 388 EDLLQADFALVLG-DPT 403 (783)
T ss_dssp HHHHHCSCEEEES-CHH
T ss_pred HHHhhCCEEEEeC-Chh
Confidence 2347999999999 754
No 130
>3trj_A Phosphoheptose isomerase; lipopolysaccharide biosynthesis; 2.80A {Francisella tularensis subsp}
Probab=54.20 E-value=52 Score=29.74 Aligned_cols=101 Identities=19% Similarity=0.190 Sum_probs=60.8
Q ss_pred cHHHHHHHHHHHcCCCEEEecCCcchHHHHH--hhhc-----CCCCeEEecCchhH---HHHhhhhh----h-----hcc
Q 007800 28 TLGRHLARRLVEIGAKDVFSVPGDFNLTLLD--HLIA-----EPELNLVGCCNELN---AGYAADGY----A-----RSR 88 (589)
Q Consensus 28 ~~a~~i~~~L~~~GV~~vfg~pG~~~~~l~~--al~~-----~~~i~~v~~~hE~~---A~~~A~gy----a-----r~t 88 (589)
..++.|++.|++.|-=++||+-++......- .|.. +.+++.+....+.. |..-..|| + ..+
T Consensus 34 ~a~~~i~~al~~~~~I~i~G~G~S~~~A~~~~~~l~~~~~~~r~g~~~~~~~~d~~~~~a~~~d~~~~~~~~~~l~~~~~ 113 (201)
T 3trj_A 34 QAAKAMVSCLENGGKVLVCGNGSSGVIAQHFTSKLLNHFEMERPPLPAIALTGDVATITAVGNHYGFSQIFAKQVAALGN 113 (201)
T ss_dssp HHHHHHHHHHHTTCCEEEEESTHHHHHHHHHHHHHHC-------CCCEEETTSCHHHHHHHHHHTCGGGTTHHHHHHHCC
T ss_pred HHHHHHHHHHHCCCEEEEEeCcHhHHHHHHHHHHhcCccCCCCCCCceEEccCChHHHHHhccCCCHHHHHHHHHHhhCC
Confidence 4567778888888999999986665444332 2332 25677666542322 11111222 1 133
Q ss_pred CceEEEEeCCcc-hHHHHHHHHHhhhcCCcEEEEeCCCCcc
Q 007800 89 GVGACVVTFTVG-GLSVLNAIAGAYSENLPVICIVGGPNSN 128 (589)
Q Consensus 89 g~~v~~~t~GpG-~~n~~~~l~~A~~~~~PllvI~g~~~~~ 128 (589)
..-++++-|..| ..+.+.++..|...++|+|.||+.....
T Consensus 114 ~~Dvvi~iS~SG~t~~~~~~~~~ak~~g~~vi~iT~~~~s~ 154 (201)
T 3trj_A 114 EDDILLVITTSGDSENILSAVEEAHDLEMKVIALTGGSGGA 154 (201)
T ss_dssp TTCEEEEECSSSCCHHHHHHHHHHHHTTCEEEEEEETTCCG
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHHCCCcEEEEECCCCCH
Confidence 344444445555 5578888888999999999999875443
No 131
>2hy5_A Putative sulfurtransferase DSRE; DSRE, DSRF, sulfur, structural genomics, PSI, protein initiative, berkeley structural genomics center, BSGC, TRAN; 1.72A {Allochromatium vinosum} SCOP: c.114.1.1 PDB: 2hyb_A
Probab=53.20 E-value=66 Score=26.69 Aligned_cols=88 Identities=17% Similarity=0.142 Sum_probs=56.8
Q ss_pred HHHHHHHHHHHHhcCC--CEEEeCcccchh-----------hHHHHHHHHHHHhCCceEEccC---CccCCCC-------
Q 007800 222 EAAVEATADFLNKAVK--PVLVGGPNIRVA-----------KAQKAFIELADATGYPIAIMPS---GKGLVPE------- 278 (589)
Q Consensus 222 ~~~i~~~~~~L~~a~r--pviv~G~g~~~~-----------~~~~~l~~lae~~~~Pv~tt~~---~~g~~~~------- 278 (589)
...++-+..++..... -|++.+.|+... +..+.+++|++..|++++.... .+|+.++
T Consensus 18 ~~al~~a~a~~~~g~~v~~vff~~dGV~~~~~~~~p~~~~~~l~~~~~~L~~~~gv~l~vC~~~~~~RGl~~~~~~~~~~ 97 (130)
T 2hy5_A 18 DSAYQFAKAALEKGHEIFRVFFYHDGVNNSTRLTTPPQDDRHIVNRWAELAEQYELDMVVCVAAAQRRGIVDEGEASRNG 97 (130)
T ss_dssp HHHHHHHHHHHHTTCEEEEEEECGGGGGGGBSCCCCCTTSCCHHHHHHHHHHHHTCCEEEEHHHHHHHTCCCHHHHHHHT
T ss_pred HHHHHHHHHHHhcCCeeCEEEEechHHHHHhcCCCCCcccCCHHHHHHHHHHHcCCeEEEeHHHHHHcCCChhhhhhhcc
Confidence 3445555555554333 478889988642 2456788999988999888553 5687655
Q ss_pred --CCCCceeeecCCCCCHHHHHHhhhcCEEEEeCC
Q 007800 279 --HHPHFIGTYWGAVSSSFCGEIVESADAYVFVGP 311 (589)
Q Consensus 279 --~~pl~~G~~~g~~~~~~~~~~l~~aD~vl~lG~ 311 (589)
.+.+..|.- ..+-....+++.++|.||.+|.
T Consensus 98 ~~~~~l~~g~~--i~~~~~l~~~~~~aD~vi~f~~ 130 (130)
T 2hy5_A 98 KDATNIHPKFR--ISGLGQLVEAAIQADRLVVFGD 130 (130)
T ss_dssp CSCCCBCTTCE--EECTHHHHHHHHHSSEEEEECC
T ss_pred cccccccCCeE--EeCHHHHHHHHHhCCEEEEeCC
Confidence 113333321 1234578888999999999973
No 132
>1tk9_A Phosphoheptose isomerase 1; lipopolysaccharide biosynthesis, structural genomics, NYSGXRC, LPC1_camje, PSI, protein structure initiative; 2.10A {Campylobacter jejuni} SCOP: c.80.1.3
Probab=53.05 E-value=59 Score=28.58 Aligned_cols=98 Identities=17% Similarity=0.092 Sum_probs=54.4
Q ss_pred cHHHHHHHHHHHcCCCEEEecCCcchHHHHHh--h-----hcCCCCeEEecCchhH---HHHhhhhh--------h-hcc
Q 007800 28 TLGRHLARRLVEIGAKDVFSVPGDFNLTLLDH--L-----IAEPELNLVGCCNELN---AGYAADGY--------A-RSR 88 (589)
Q Consensus 28 ~~a~~i~~~L~~~GV~~vfg~pG~~~~~l~~a--l-----~~~~~i~~v~~~hE~~---A~~~A~gy--------a-r~t 88 (589)
..++.|++.|.+.+-=++||+-++......-+ | ....+++++....+.+ +..-..+| . ..+
T Consensus 30 ~~~~~i~~~l~~~~~I~i~G~G~S~~~a~~~~~~l~~~~~~~~~g~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (188)
T 1tk9_A 30 KVGELLCECLKKGGKILICGNGGSAADAQHFAAELSGRYKKERKALAGIALTTDTSALSAIGNDYGFEFVFSRQVEALGN 109 (188)
T ss_dssp HHHHHHHHHHHTTCCEEEEESTHHHHHHHHHHHHHHSCSSSCCCCCCEEESSCCHHHHHHHHHHTCGGGHHHHHHHHHCC
T ss_pred HHHHHHHHHHHCCCEEEEEeCcHhHHHHHHHHHHHhhhhccCCCCCceEeccCCchhHhhhhcCCCHHHHHHHHHHHhCC
Confidence 45566666777787667778755554333222 1 1123566555432222 11111121 1 233
Q ss_pred CceEEEEeCCcc-hHHHHHHHHHhhhcCCcEEEEeCCC
Q 007800 89 GVGACVVTFTVG-GLSVLNAIAGAYSENLPVICIVGGP 125 (589)
Q Consensus 89 g~~v~~~t~GpG-~~n~~~~l~~A~~~~~PllvI~g~~ 125 (589)
..-++++-|-.| ..+.+..+..|...+.++|.||+..
T Consensus 110 ~~Dvvi~iS~sG~t~~~~~~~~~ak~~g~~vi~iT~~~ 147 (188)
T 1tk9_A 110 EKDVLIGISTSGKSPNVLEALKKAKELNMLCLGLSGKG 147 (188)
T ss_dssp TTCEEEEECSSSCCHHHHHHHHHHHHTTCEEEEEEEGG
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHHCCCEEEEEeCCC
Confidence 344444444445 5567788888999999999999853
No 133
>2iv2_X Formate dehydrogenase H; oxidoreductase, 4Fe-4S, anaerobic, complete proteome, direct protein sequencing, Fe4S4, iron, iron sulfur cluster; HET: 2MD MGD; 2.27A {Escherichia coli} SCOP: b.52.2.2 c.81.1.1 PDB: 1fdi_A* 1fdo_A* 1aa6_A*
Probab=52.49 E-value=8.1 Score=42.90 Aligned_cols=115 Identities=15% Similarity=0.133 Sum_probs=60.2
Q ss_pred HHHHHHHHHHHHHhcC-----CCEEEeCc-ccchhhHHHHHHHHHH-HhCCceEEccCCccCCCC--CCCCceeeecCCC
Q 007800 221 LEAAVEATADFLNKAV-----KPVLVGGP-NIRVAKAQKAFIELAD-ATGYPIAIMPSGKGLVPE--HHPHFIGTYWGAV 291 (589)
Q Consensus 221 ~~~~i~~~~~~L~~a~-----rpviv~G~-g~~~~~~~~~l~~lae-~~~~Pv~tt~~~~g~~~~--~~pl~~G~~~g~~ 291 (589)
-+++++.+++.|++.+ .-+.+.++ +....+..-.+.+|+. .+|.+-+.+.......+. .....+|. +..
T Consensus 80 WdeAl~~ia~~l~~i~~~~G~~~i~~~~~~~~~~~e~~~~~~~~~~~~~Gs~n~~~~~~~c~~~~~~~~~~~~G~--~~~ 157 (715)
T 2iv2_X 80 WDEALNYVAERLSAIKEKYGPDAIQTTGSSRGTGNETNYVMQKFARAVIGTNNVDCCARVXHGPSVAGLHQSVGN--GAM 157 (715)
T ss_dssp HHHHHHHHHHHHHHHHHHHCGGGEEEECCSSTTCHHHHHHHHHHHHHTTCCCCEECSSCCSCCSSSCSHHHHHSC--CSC
T ss_pred HHHHHHHHHHHHHHHHHhhCCCeEEEEecCCCcCcHHHHHHHHHHHHhcCCCcCCCCCccchhHHHHHHHhhcCC--CCC
Confidence 4667888888777642 22444443 3331234456789998 899876654322111111 11111221 111
Q ss_pred CCHHHHHHhhhcCEEEEeCCCcCCcccccccc----cCCCCceEEEcCCcee
Q 007800 292 SSSFCGEIVESADAYVFVGPIFNDYSSVGYSL----LIKKEKAIIVQPHRVT 339 (589)
Q Consensus 292 ~~~~~~~~l~~aD~vl~lG~~~~~~~~~~~~~----~~~~~~~i~id~d~~~ 339 (589)
.. ...-+.++|+||++|+.+.+.....+.. ..++.|+|.||+....
T Consensus 158 ~~--~~~di~~ad~il~~G~n~~~~~p~~~~~l~~a~~~G~klividPr~t~ 207 (715)
T 2iv2_X 158 SN--AINEIDNTDLVFVFGYNPADSHPIVANHVINAKRNGAKIIVCDPRKIE 207 (715)
T ss_dssp SS--CGGGGGGCSEEEEESCCHHHHCHHHHHHHHHHHHTTCEEEEECSSCCH
T ss_pred CC--CHhHHhcCCEEEEEcCChHHhCHHHHHHHHHHHHCCCeEEEEcCCCCc
Confidence 11 1123589999999998754332211111 1245789999987643
No 134
>2ivf_A Ethylbenzene dehydrogenase alpha-subunit; anaerobic hydrocarbon degradation, MOCO, Fe/S cluster, MO- B enzyme, DMSO reductase family; HET: MES MGD MD1 HEM; 1.88A {Aromatoleum aromaticum}
Probab=47.20 E-value=3.6 Score=47.61 Aligned_cols=115 Identities=12% Similarity=0.001 Sum_probs=60.0
Q ss_pred HHHHHHHHHHHHHhc------CCCEEEeCcccchhhHHHHHHHHHHHhCCceEEccCCccCCCCCCCCceeeecCCCCCH
Q 007800 221 LEAAVEATADFLNKA------VKPVLVGGPNIRVAKAQKAFIELADATGYPIAIMPSGKGLVPEHHPHFIGTYWGAVSSS 294 (589)
Q Consensus 221 ~~~~i~~~~~~L~~a------~rpviv~G~g~~~~~~~~~l~~lae~~~~Pv~tt~~~~g~~~~~~pl~~G~~~g~~~~~ 294 (589)
-+++++.+++.|++. ++..++.|.+.........+.+|+..+|-+.+......+......+..+|. +....
T Consensus 163 WdeAl~~IA~~l~~i~~~~Gp~~i~~~~~~~~~~~~~~~~~~rf~~~lG~~n~~~~~~~~~~~~a~~~~~G~--~~~~~- 239 (976)
T 2ivf_A 163 WDEAAGDIADSIIDSFEAQGSDGFILDAPHVHAGSIAWGAGFRMTYLMDGVSPDINVDIGDTYMGAFHTFGK--MHMGY- 239 (976)
T ss_dssp HHHHHHHHHHHHHHHHHHHGGGGEEECCCCSTTCHHHHHHHHHHHHHHTCBEECHHHHHTCCCHHHHHHHSC--CCCBC-
T ss_pred HHHHHHHHHHHHHHHHHHhCCceEEEEecCCccchHHHHHHHHHHHHhCCcccCccccccchhhhhhheecC--CCCCC-
Confidence 456777777777653 233443443333222235678999999988765222111111111222222 00111
Q ss_pred HHHHHhhhcCEEEEeCCCcCCccccccccc----CCCCceEEEcCCcee
Q 007800 295 FCGEIVESADAYVFVGPIFNDYSSVGYSLL----IKKEKAIIVQPHRVT 339 (589)
Q Consensus 295 ~~~~~l~~aD~vl~lG~~~~~~~~~~~~~~----~~~~~~i~id~d~~~ 339 (589)
. ..=+.+||+||++|+.+.+.....+..+ .++.|+|.||+....
T Consensus 240 ~-~~D~~nad~Il~~G~N~~~~~p~~~~~~~~ar~~GakvivVDPr~t~ 287 (976)
T 2ivf_A 240 S-ADNLLDAELIFMTCSNWSYTYPSSYHFLSEARYKGAEVVVIAPDFNP 287 (976)
T ss_dssp C-GGGGGGCSEEEEESCCHHHHCTTTHHHHHHHHHHTCEEEEECSSCCT
T ss_pred C-hhhHhhCcEEEEeCCChhHcccHHHHHHHHHHHcCCEEEEECCCCCc
Confidence 1 1126799999999987644332222111 135799999987654
No 135
>4grd_A N5-CAIR mutase, phosphoribosylaminoimidazole carboxylase catalyti; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures; 1.85A {Burkholderia cenocepacia}
Probab=40.17 E-value=71 Score=28.18 Aligned_cols=36 Identities=19% Similarity=0.125 Sum_probs=30.8
Q ss_pred cccccCCCcccHHHHHHHHHHHcCCCEEEecCCcch
Q 007800 18 APVRGGASVGTLGRHLARRLVEIGAKDVFSVPGDFN 53 (589)
Q Consensus 18 ~~~~~~~~~~~~a~~i~~~L~~~GV~~vfg~pG~~~ 53 (589)
.=..|..+.+..++-.++.|++.||.|=.++-|-+=
T Consensus 16 ~IimGS~SD~~v~~~a~~~l~~~gi~~ev~V~saHR 51 (173)
T 4grd_A 16 GVLMGSSSDWDVMKHAVAILQEFGVPYEAKVVSAHR 51 (173)
T ss_dssp EEEESSGGGHHHHHHHHHHHHHTTCCEEEEECCTTT
T ss_pred EEEeCcHhHHHHHHHHHHHHHHcCCCEEEEEEcccc
Confidence 445667778999999999999999999999998653
No 136
>1e2b_A Enzyme IIB-cellobiose; phosphotransferase system, transferas transport, phosphorylation; NMR {Escherichia coli} SCOP: c.44.2.1 PDB: 1iib_A 1h9c_A* 2wwv_D 2wy2_D
Probab=40.14 E-value=42 Score=27.03 Aligned_cols=32 Identities=9% Similarity=0.080 Sum_probs=27.6
Q ss_pred CCCEEEeCcccchhhHHHHHHHHHHHhCCceE
Q 007800 236 VKPVLVGGPNIRVAKAQKAFIELADATGYPIA 267 (589)
Q Consensus 236 ~rpviv~G~g~~~~~~~~~l~~lae~~~~Pv~ 267 (589)
+|.++++|.|...|-..+.+++.++..|+++-
T Consensus 4 kkIll~Cg~G~sTS~l~~k~~~~~~~~gi~~~ 35 (106)
T 1e2b_A 4 KHIYLFSSAGMSTSLLVSKMRAQAEKYEVPVI 35 (106)
T ss_dssp EEEEEECSSSTTTHHHHHHHHHHHHHSCCSEE
T ss_pred cEEEEECCCchhHHHHHHHHHHHHHHCCCCeE
Confidence 46788999999888777899999999999864
No 137
>2xbl_A Phosphoheptose isomerase; capsule; HET: M7P PGE PG4; 1.62A {Burkholderia pseudomallei} PDB: 2x3y_A
Probab=39.93 E-value=1.4e+02 Score=26.21 Aligned_cols=99 Identities=11% Similarity=0.055 Sum_probs=53.4
Q ss_pred cHHHHHHHHHHHcCCCEEEecCCcchHHHHHh--hh-----cCCCCeEEecCchhHH---HHh--------hhhhhh-cc
Q 007800 28 TLGRHLARRLVEIGAKDVFSVPGDFNLTLLDH--LI-----AEPELNLVGCCNELNA---GYA--------ADGYAR-SR 88 (589)
Q Consensus 28 ~~a~~i~~~L~~~GV~~vfg~pG~~~~~l~~a--l~-----~~~~i~~v~~~hE~~A---~~~--------A~gyar-~t 88 (589)
..++.|++.+.+.+-=++||+-++......-+ |. ...+++++....+.+- ..- ...+.. .+
T Consensus 36 ~~~~~i~~~i~~~~~I~i~G~G~S~~~A~~~~~~l~~~~~~~~~g~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (198)
T 2xbl_A 36 KVADACIASIAQGGKVLLAGNGGSAADAQHIAGEFVSRFAFDRPGLPAVALTTDTSILTAIGNDYGYEKLFSRQVQALGN 115 (198)
T ss_dssp HHHHHHHHHHHTTCCEEEECSTHHHHHHHHHHHHHHSCSSSCCCCCCEEETTCCHHHHHHHHHHHCGGGTTHHHHHHHCC
T ss_pred HHHHHHHHHHHcCCEEEEEeCcHhhHHHHHHHHHHHhhhccCCCCCceEEecCChHHHHHhhccCCHHHHHHHHHHhhCC
Confidence 34555666666776666677754443332221 11 1245666655322221 111 111222 33
Q ss_pred CceEEEEeCCcc-hHHHHHHHHHhhhcCCcEEEEeCCCC
Q 007800 89 GVGACVVTFTVG-GLSVLNAIAGAYSENLPVICIVGGPN 126 (589)
Q Consensus 89 g~~v~~~t~GpG-~~n~~~~l~~A~~~~~PllvI~g~~~ 126 (589)
..-++++-|.+| ..+.+..+-.|...+.++|.||+...
T Consensus 116 ~~d~vI~iS~SG~t~~~~~~~~~ak~~g~~vI~IT~~~~ 154 (198)
T 2xbl_A 116 EGDVLIGYSTSGKSPNILAAFREAKAKGMTCVGFTGNRG 154 (198)
T ss_dssp TTCEEEEECSSSCCHHHHHHHHHHHHTTCEEEEEECSCC
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHHCCCeEEEEECCCC
Confidence 344444445555 45677888889999999999998643
No 138
>1x92_A APC5045, phosphoheptose isomerase; midwest centre for structural genomics, SIS domain, A/B protein, lipopolysaccharide biosynthesis, PSI; HET: M7P; 2.30A {Pseudomonas aeruginosa} SCOP: c.80.1.3 PDB: 3bjz_A
Probab=39.67 E-value=1.2e+02 Score=26.94 Aligned_cols=97 Identities=18% Similarity=0.200 Sum_probs=54.0
Q ss_pred HHHHHHHHHHHcCCCEEEecCCcchHH--HHHhhh-----cCCCCeEEecCchhHHHHh----hhhh---------hhcc
Q 007800 29 LGRHLARRLVEIGAKDVFSVPGDFNLT--LLDHLI-----AEPELNLVGCCNELNAGYA----ADGY---------ARSR 88 (589)
Q Consensus 29 ~a~~i~~~L~~~GV~~vfg~pG~~~~~--l~~al~-----~~~~i~~v~~~hE~~A~~~----A~gy---------ar~t 88 (589)
..+.+++.+.+.+-=++||+-++.... +...|. ...+++.+......+ ... -.+| ...+
T Consensus 34 ~~~~i~~~i~~a~~I~i~G~G~S~~~A~~~~~~l~~~~~~~~~g~~~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~~~~~ 112 (199)
T 1x92_A 34 ASLVMVNALLNEGKILSCGNGGSAGDAQHFSSELLNRFERERPSLPAVALTTDSS-TITSIANDYSYNEVFSKQIRALGQ 112 (199)
T ss_dssp HHHHHHHHHHTTCCEEEECSTHHHHHHHHHHHHHHTCSSSCCCCCCEEETTCCHH-HHHHHHHHTCGGGTTHHHHHHHCC
T ss_pred HHHHHHHHHHCCCEEEEEcCchhHHHHHHHHHHHhcCcccCCCCCceEecCCChh-HHHHhhcCccHHHHHHHHHHhCCC
Confidence 456667778787766667774443322 112231 235666665432111 111 1122 1233
Q ss_pred CceEEEEeCCcc-hHHHHHHHHHhhhcCCcEEEEeCCCC
Q 007800 89 GVGACVVTFTVG-GLSVLNAIAGAYSENLPVICIVGGPN 126 (589)
Q Consensus 89 g~~v~~~t~GpG-~~n~~~~l~~A~~~~~PllvI~g~~~ 126 (589)
..-++++-|.+| ..+.+.++-.|...+.++|.||+...
T Consensus 113 ~~DvvI~iS~SG~t~~~i~~~~~ak~~g~~vI~IT~~~~ 151 (199)
T 1x92_A 113 PGDVLLAISTSGNSANVIQAIQAAHDREMLVVALTGRDG 151 (199)
T ss_dssp TTCEEEEECSSSCCHHHHHHHHHHHHTTCEEEEEECTTC
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHHCCCEEEEEECCCC
Confidence 344444445555 56788888889999999999998643
No 139
>3fxa_A SIS domain protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.60A {Listeria monocytogenes str}
Probab=38.75 E-value=47 Score=29.77 Aligned_cols=46 Identities=17% Similarity=0.235 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHhcCCCEEEeCcccchhhHHHHHHHHHHHhCCceEE
Q 007800 222 EAAVEATADFLNKAVKPVLVGGPNIRVAKAQKAFIELADATGYPIAI 268 (589)
Q Consensus 222 ~~~i~~~~~~L~~a~rpviv~G~g~~~~~~~~~l~~lae~~~~Pv~t 268 (589)
.+.+++++++|.++++-++++|.|.... ....+.....++|.|+..
T Consensus 31 ~~~i~~~~~~i~~a~~~I~i~G~G~S~~-~A~~~~~~l~~~g~~~~~ 76 (201)
T 3fxa_A 31 EEALVKTVEKIAECTGKIVVAGCGTSGV-AAKKLVHSFNCIERPAVF 76 (201)
T ss_dssp HHHHHHHHHHHHHCSSCEEEECCTHHHH-HHHHHHHHHHHTTCCEEE
T ss_pred HHHHHHHHHHHHhcCCcEEEEEecHHHH-HHHHHHHHHHhcCCcEEE
Confidence 4678999999999976889999888754 333444444568988876
No 140
>2m1z_A LMO0427 protein; homolog PTS system IIB component, transferase; NMR {Listeria monocytogenes egd-e}
Probab=38.60 E-value=42 Score=27.18 Aligned_cols=92 Identities=11% Similarity=0.078 Sum_probs=54.6
Q ss_pred eCcccchhh-HHHHHHHHHHHhCCceEEccCCccCCCCCCCCceeeecCCCCCHHHHHHhhhcCEEEEeCCC-cCCcccc
Q 007800 242 GGPNIRVAK-AQKAFIELADATGYPIAIMPSGKGLVPEHHPHFIGTYWGAVSSSFCGEIVESADAYVFVGPI-FNDYSSV 319 (589)
Q Consensus 242 ~G~g~~~~~-~~~~l~~lae~~~~Pv~tt~~~~g~~~~~~pl~~G~~~g~~~~~~~~~~l~~aD~vl~lG~~-~~~~~~~ 319 (589)
++.|...+. +.+.|++.|+++|+.+-....|. ..-.++ -..+-+.+||+||+.... ..+..
T Consensus 11 CptGiAhTymAAeaLekaA~~~G~~ikVEtqgs--~g~~n~-------------Lt~~~I~~AD~VIia~d~~v~~~~-- 73 (106)
T 2m1z_A 11 CATGVAHTYMAAQALKKGAKKMGNLIKVETQGA--TGIENE-------------LTEKDVNIGEVVIFAVDTKVRNKE-- 73 (106)
T ss_dssp CSSCHHHHHHHHHHHHHHHHHHTCEEEEEEEET--TEESSC-------------CCHHHHHHCSEEEEEESSCCSTHH--
T ss_pred CCCcHHHHHHHHHHHHHHHHHCCCEEEEEEecC--ccccCC-------------CCHHHHhhCCEEEEeccccccchh--
Confidence 466666554 58899999999999987655542 101111 123566899999998642 21211
Q ss_pred cccccCCCCceEEEcCCceeecCCCccccccHHHHHHHHHHHhh
Q 007800 320 GYSLLIKKEKAIIVQPHRVTVGNGPSLGWVFMADFLSALAKKLR 363 (589)
Q Consensus 320 ~~~~~~~~~~~i~id~d~~~~~~~~~~~~~~~~~~l~~L~~~l~ 363 (589)
.| .+.++++++.... + -++..+|+...+.++
T Consensus 74 ---RF-~gk~v~~~~v~~~-i--------~~~~~~l~~a~~~~~ 104 (106)
T 2m1z_A 74 ---RF-DGKVVLEVPVSAP-I--------KDAEKVINAALALID 104 (106)
T ss_dssp ---HH-TTSEEEEECTTHH-H--------HCHHHHHHHHHHHHT
T ss_pred ---cc-CCCcEEEEcHHHH-H--------HCHHHHHHHHHHHHh
Confidence 12 2446777766542 1 145677766655554
No 141
>2d1p_A TUSD, hypothetical UPF0163 protein YHEN; tRNA modification, sulfur transfer, structural genomics, translation; 2.15A {Escherichia coli} SCOP: c.114.1.1
Probab=37.96 E-value=1.7e+02 Score=24.64 Aligned_cols=86 Identities=16% Similarity=0.132 Sum_probs=57.3
Q ss_pred HHHHHHHHHHHHhcCCC--EEEeCcccchh-----------hHHHHHHHHHHHhCCceEEcc---CCccCCCC-------
Q 007800 222 EAAVEATADFLNKAVKP--VLVGGPNIRVA-----------KAQKAFIELADATGYPIAIMP---SGKGLVPE------- 278 (589)
Q Consensus 222 ~~~i~~~~~~L~~a~rp--viv~G~g~~~~-----------~~~~~l~~lae~~~~Pv~tt~---~~~g~~~~------- 278 (589)
...++-+..++...... |++.+.|+... +..+.+..|++..|+++.... ..||+.++
T Consensus 30 ~~Al~~A~aala~g~eV~~VFf~~DGV~~a~~~q~p~~~~~~l~~~~~~La~~~gv~l~vC~~~a~~RGi~~~~~a~~~~ 109 (140)
T 2d1p_A 30 SSAFQFAQALIADGHELSSVFFYREGVYNANQLTSPASDEFDLVRAWQQLNAQHGVALNICVAAALRRGVVDETEAGRLG 109 (140)
T ss_dssp HHHHHHHHHHHHTTCEEEEEEECGGGGGGGBTTCCCCTTSCCHHHHHHHHHHHHCCEEEEEHHHHHHTTCCCHHHHHHHT
T ss_pred HHHHHHHHHHHHCCCccCEEEEechHHHHHhcCCCCccccCChHHHHHHHHHHcCCEEEEeHHHHHHcCCCchhhhhhcc
Confidence 44566666666554433 68888888653 235678889999999987755 35788765
Q ss_pred --CCCCceeeecCCCCCHHHHHHhhhcCEEEEe
Q 007800 279 --HHPHFIGTYWGAVSSSFCGEIVESADAYVFV 309 (589)
Q Consensus 279 --~~pl~~G~~~g~~~~~~~~~~l~~aD~vl~l 309 (589)
.+.+..|.- ..+-....+++.++|.||.+
T Consensus 110 ~~~~~L~~g~~--i~gl~~L~~~~~~aDrVitF 140 (140)
T 2d1p_A 110 LASSNLQQGFT--LSGLGALAEASLTCDRVVQF 140 (140)
T ss_dssp CSCCCBCTTEE--EECTHHHHHHHHHSSEEEEC
T ss_pred cccccccCCeE--EcCHHHHHHHHHhCCEEEeC
Confidence 123433432 23456788999999999875
No 142
>2yva_A DNAA initiator-associating protein DIAA; intermolecular disulfide bonding, putative phosphosugar BIND protein, DNAA binding protein; 1.85A {Escherichia coli}
Probab=34.41 E-value=1.7e+02 Score=25.62 Aligned_cols=100 Identities=11% Similarity=0.068 Sum_probs=58.2
Q ss_pred cHHHHHHHHHHHcCCCEEEecCCcchHHHH--Hhhhc-----CCCCeEEecCchhHHHH---hhhhh---------hhcc
Q 007800 28 TLGRHLARRLVEIGAKDVFSVPGDFNLTLL--DHLIA-----EPELNLVGCCNELNAGY---AADGY---------ARSR 88 (589)
Q Consensus 28 ~~a~~i~~~L~~~GV~~vfg~pG~~~~~l~--~al~~-----~~~i~~v~~~hE~~A~~---~A~gy---------ar~t 88 (589)
...+.+++.+.+.+-=++||+-++...... ..|.. ..+++.+....+.+... --.+| ...+
T Consensus 29 ~~~~~~~~~i~~a~~I~i~G~G~S~~~A~~~~~~l~~~~~~~~~g~~~~~~~~~~~~~~a~~~d~~~~~~~~~~~~~~~~ 108 (196)
T 2yva_A 29 RAAMTLVQSLLNGNKILCCGNGTSAANAQHFAASMINRFETERPSLPAIALNTDNVVLTAIANDRLHDEVYAKQVRALGH 108 (196)
T ss_dssp HHHHHHHHHHHTTCCEEEEESTHHHHHHHHHHHHHHTCSSSCCCCCCEEESSCCHHHHHHHTTSTTGGGHHHHHHHHHCC
T ss_pred HHHHHHHHHHHcCCEEEEEeCchhhHHHHHHHHHHhccccccCCCCceEeecCchHHHHHHhcCCCHHHHHHHHHHhcCC
Confidence 345778888888887778888555433321 12331 35676666543221111 01122 2233
Q ss_pred CceEEEEeCCcc-hHHHHHHHHHhhhcCCcEEEEeCCCCc
Q 007800 89 GVGACVVTFTVG-GLSVLNAIAGAYSENLPVICIVGGPNS 127 (589)
Q Consensus 89 g~~v~~~t~GpG-~~n~~~~l~~A~~~~~PllvI~g~~~~ 127 (589)
..-++++-|.+| ..+.+.++-.|...+.++|.||+....
T Consensus 109 ~~DvvI~iS~SG~t~~~i~~~~~ak~~g~~vI~IT~~~~s 148 (196)
T 2yva_A 109 AGDVLLAISTRGNSRDIVKAVEAAVTRDMTIVALTGYDGG 148 (196)
T ss_dssp TTCEEEEECSSSCCHHHHHHHHHHHHTTCEEEEEECTTCH
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHHCCCEEEEEeCCCCc
Confidence 344444445555 567888888899999999999986543
No 143
>3ibs_A Conserved hypothetical protein BATB; structural genomics, protein structure, midwest center for S genomics, MCSG, PSI-2; HET: MSE; 2.10A {Bacteroides thetaiotaomicron}
Probab=32.04 E-value=1.6e+02 Score=26.15 Aligned_cols=101 Identities=15% Similarity=0.099 Sum_probs=53.0
Q ss_pred cchhhHHHHHHHHhhhc-CCCcEEEEEcchhhccc-HHHHHHHHH-hCCCeEEEEEeCCchh-hhhhhcCCCCC------
Q 007800 439 GSIGWSVGATLGYAQAA-KDKRVIACIGDGSFQVT-AQEISTMIR-CGQRSIIFLINNGGYT-IEVEIHDGPYN------ 508 (589)
Q Consensus 439 g~mG~~l~~aiGaala~-~~~~vv~i~GDGsf~~~-~~el~ta~~-~~l~v~ivv~nN~~~~-~~~~~~~~~~~------ 508 (589)
..++.++-.|.-.-... ...++|+++.||.-... ..+.....+ .++++.+|-+-+.... +... ..+.|.
T Consensus 92 T~l~~al~~a~~~l~~~~~~~~~ivllTDG~~~~~~~~~~~~~~~~~~i~v~~igig~~~~~~~~~~-g~~~~~~~~~g~ 170 (218)
T 3ibs_A 92 TAIGEAINLATRSFTPQEGVGRAIIVITDGENHEGGAVEAAKAAAEKGIQVSVLGVGMPEGAPIPVE-GTNDYRRDREGN 170 (218)
T ss_dssp CCHHHHHHHHHTTSCSCSSCCEEEEEEECCTTCCSCHHHHHHHHHTTTEEEEEEEESCTTCEECBCT-TSSCBCBCTTSC
T ss_pred CcHHHHHHHHHHHHhhCCCCCcEEEEEcCCCCCCCcHHHHHHHHHhcCCEEEEEEecCCCCCccccc-CCCceeEcCCCC
Confidence 44555555554322211 24579999999977654 555544433 5666666655442110 0000 000010
Q ss_pred ----CCCCCChHHHHHHccCCCCCccEEEeCC-HHHHHHHHH
Q 007800 509 ----VIKNWDYTGLVNAIHNGEGKCWTAKVRS-EDELTEAMK 545 (589)
Q Consensus 509 ----~~~~~d~~~la~a~G~~~~~~~~~~v~~-~~~l~~al~ 545 (589)
....--+.++|+.-|+ .++.+.+ .+.++..++
T Consensus 171 ~~~~~~~~~~L~~iA~~~gG-----~~~~~~~~~~~~~~~~~ 207 (218)
T 3ibs_A 171 VIVTRLNEGMCQEIAKDGKG-----IYVRVDNSNSAQKAISQ 207 (218)
T ss_dssp BCEECCCHHHHHHHHHHTEE-----EEEEECSSSHHHHHHHH
T ss_pred EeEecCCHHHHHHHHHhcCC-----EEEECCCChHHHHHHHH
Confidence 1111236788999998 8888887 455554443
No 144
>3lou_A Formyltetrahydrofolate deformylase; structural genomics, JOI for structural genomics, JCSG, protein structure initiative hydrolase; HET: MSE; 1.90A {Burkholderia mallei}
Probab=31.80 E-value=56 Score=31.70 Aligned_cols=65 Identities=8% Similarity=-0.055 Sum_probs=39.4
Q ss_pred CcEEEEEcchhhcccHHHHHHHHHh---CCCeEEEEEeCCchhhhhhhcCCCCCCCCCCChHHHHHHccCCCCCccEEEe
Q 007800 458 KRVIACIGDGSFQVTAQEISTMIRC---GQRSIIFLINNGGYTIEVEIHDGPYNVIKNWDYTGLVNAIHNGEGKCWTAKV 534 (589)
Q Consensus 458 ~~vv~i~GDGsf~~~~~el~ta~~~---~l~v~ivv~nN~~~~~~~~~~~~~~~~~~~~d~~~la~a~G~~~~~~~~~~v 534 (589)
|-+|++.|.|+ ++++|..+.+. +..+..||-|+. |...+|+.+|+ +.+.+
T Consensus 97 ri~vl~Sg~g~---~l~~ll~~~~~g~l~~~i~~Visn~~-------------------~~~~~A~~~gI-----p~~~~ 149 (292)
T 3lou_A 97 KVLIMVSKLEH---CLADLLFRWKMGELKMDIVGIVSNHP-------------------DFAPLAAQHGL-----PFRHF 149 (292)
T ss_dssp EEEEEECSCCH---HHHHHHHHHHHTSSCCEEEEEEESSS-------------------TTHHHHHHTTC-----CEEEC
T ss_pred EEEEEEcCCCc---CHHHHHHHHHcCCCCcEEEEEEeCcH-------------------HHHHHHHHcCC-----CEEEe
Confidence 44667777774 67777766653 345666666655 34567899998 66654
Q ss_pred C----CHHHHHHHHHHhhh
Q 007800 535 R----SEDELTEAMKTATG 549 (589)
Q Consensus 535 ~----~~~~l~~al~~a~~ 549 (589)
. +..+.++.+.+.+.
T Consensus 150 ~~~~~~r~~~~~~~~~~l~ 168 (292)
T 3lou_A 150 PITADTKAQQEAQWLDVFE 168 (292)
T ss_dssp CCCSSCHHHHHHHHHHHHH
T ss_pred CCCcCCHHHHHHHHHHHHH
Confidence 3 34444444444443
No 145
>3cvj_A Putative phosphoheptose isomerase; rossman fold, 3-layer (ABA) sandwich, structural genomics, J center for structural genomics, JCSG; HET: MSE; 2.00A {Bacillus halodurans c-125}
Probab=31.28 E-value=1.7e+02 Score=26.91 Aligned_cols=36 Identities=8% Similarity=0.035 Sum_probs=27.1
Q ss_pred ceEEEEeCCcc-hHHHHHHHHHhhhcCCcEEEEeCCC
Q 007800 90 VGACVVTFTVG-GLSVLNAIAGAYSENLPVICIVGGP 125 (589)
Q Consensus 90 ~~v~~~t~GpG-~~n~~~~l~~A~~~~~PllvI~g~~ 125 (589)
.-++++-|..| ..+.+..+..|...++++|.||+..
T Consensus 109 ~Dv~I~iS~SG~t~~~i~~~~~Ak~~G~~vI~IT~~~ 145 (243)
T 3cvj_A 109 KDVIMIISNSGRNTVPVEMAIESRNIGAKVIAMTSMK 145 (243)
T ss_dssp TCEEEEECSSCCSHHHHHHHHHHHHHTCEEEEEECHH
T ss_pred CCEEEEEeCCCCCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence 34555555556 4577888888999999999999863
No 146
>2i2w_A Phosphoheptose isomerase; lipopolysaccharide biosynthesis; 1.95A {Escherichia coli} PDB: 2i22_A 1x94_A
Probab=29.78 E-value=1.3e+02 Score=27.04 Aligned_cols=40 Identities=28% Similarity=0.325 Sum_probs=28.1
Q ss_pred cCceEEEEeCCcc-hHHHHHHHHHhhhcCCcEEEEeCCCCc
Q 007800 88 RGVGACVVTFTVG-GLSVLNAIAGAYSENLPVICIVGGPNS 127 (589)
Q Consensus 88 tg~~v~~~t~GpG-~~n~~~~l~~A~~~~~PllvI~g~~~~ 127 (589)
+..-++++-|.+| ..+.+.++..|...+.++|.||+....
T Consensus 130 ~~~DvvI~iS~SG~t~~~i~~~~~ak~~G~~vIaIT~~~~s 170 (212)
T 2i2w_A 130 REGDVLLGISTSGNSANVIKAIAAAREKGMKVITLTGKDGG 170 (212)
T ss_dssp CTTCEEEEECSSSCCHHHHHHHHHHHHHTCEEEEEEETTCG
T ss_pred CCCCEEEEEECCCCCHHHHHHHHHHHHCCCeEEEEECCCCC
Confidence 3344444444445 467888888899999999999986443
No 147
>2d00_A V-type ATP synthase subunit F; V-ATPase, CHEY, FRET, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.149.1.1 PDB: 3a5c_H* 3a5d_H 3j0j_H*
Probab=29.67 E-value=92 Score=25.16 Aligned_cols=32 Identities=9% Similarity=-0.132 Sum_probs=23.4
Q ss_pred CChHHHHHHccCCCCCccEEEeCCHHHHHHHHHHhhh
Q 007800 513 WDYTGLVNAIHNGEGKCWTAKVRSEDELTEAMKTATG 549 (589)
Q Consensus 513 ~d~~~la~a~G~~~~~~~~~~v~~~~~l~~al~~a~~ 549 (589)
.|...-.+..|+ +.+.|++.++++++|++..+
T Consensus 12 ~dtv~GFrLaGi-----~~~~v~~~ee~~~~~~~l~~ 43 (109)
T 2d00_A 12 PETAQGFRLAGL-----EGYGASSAEEAQSLLETLVE 43 (109)
T ss_dssp HHHHHHHHHTTS-----EEEECSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCC-----eEEEeCCHHHHHHHHHHHhh
Confidence 355555667777 77778888888888887764
No 148
>3ahc_A Phosphoketolase, xylulose 5-phosphate/fructose 6-phosphate phospho; thiamine diphosphate-dependent enzyme, alpha-beta fold; HET: TPP 2PE; 1.70A {Bifidobacterium breve} PDB: 3ahd_A* 3ahe_A* 3ahf_A* 3ahj_A* 3ahi_A* 3ahh_A* 3ahg_A* 3ai7_A*
Probab=29.31 E-value=5.5e+02 Score=28.72 Aligned_cols=116 Identities=11% Similarity=0.093 Sum_probs=61.7
Q ss_pred CeEEecCchhHHHHhhhhhhhccCceEEEEeCCcchHH----HHHH----HHHh-----hhcCC-cEEEEeCCCCccccC
Q 007800 66 LNLVGCCNELNAGYAADGYARSRGVGACVVTFTVGGLS----VLNA----IAGA-----YSENL-PVICIVGGPNSNDYG 131 (589)
Q Consensus 66 i~~v~~~hE~~A~~~A~gyar~tg~~v~~~t~GpG~~n----~~~~----l~~A-----~~~~~-PllvI~g~~~~~~~~ 131 (589)
=++|....|++.+.+|.||+...+.+ ++.+. -.++. +.+. |-.+ |.-.+ ++.+|.....-. .+
T Consensus 491 GR~i~GI~Eh~M~gia~Glal~G~~~-f~~t~-atFl~~~~~a~~q~akwiR~a~a~~~wr~~~~~v~~v~Th~si~-~G 567 (845)
T 3ahc_A 491 GQVTEQLSEHQCEGFLEAYLLTGRHG-IWSSY-ESFVHVIDSMLNQHAKWLEATVREIPWRKPISSVNLLVSSHVWR-QD 567 (845)
T ss_dssp CSEEECSCHHHHHHHHHHHHHTTCEE-EEEEE-HHHHGGGHHHHHHHHHHHHHHHHHCTTSCCCBCEEEEEESCGGG-CT
T ss_pred CcEeeeecHHHHHHHHHHHHhcCCCC-ceecc-hhhhchhhhHHHHHHHHHHhhHHhhhhcccCCceEEEEeCCcee-ec
Confidence 36777999999999999999874433 33332 23333 2333 2222 11245 466554443332 23
Q ss_pred CccceeeecCCCChHHHHHhhh--cce-eEEEEeCChhhHHHHHHHHHHHhHhcCCcEEEEeC
Q 007800 132 TNRILHHTIGLPDFTQELRCFQ--AIT-CSQAVVNNLGDAHELIDTAISTALKESKPVYISIS 191 (589)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~--~~t-k~~~~v~~~~~~~~~l~~A~~~a~~~~gPV~i~iP 191 (589)
.+..-||. .++.+...+.+ .+- -..+++.+.. .+..|++.|...++|+|+.+-
T Consensus 568 eDGpTHQ~---~e~~d~l~~~r~~~iPn~~V~~PaDan----et~~a~~~al~~~~~~~v~v~ 623 (845)
T 3ahc_A 568 HNGFSHQD---PGVTSLLINKTFNNDHVTNIYFATDAN----MLLAISEKCFKSTNKINAIFA 623 (845)
T ss_dssp TTCGGGCC---CTHHHHHGGGCCTTCCCEEEEECCSHH----HHHHHHHHHHHCBSCEEEEEC
T ss_pred CCCCCCCC---cHHHHHHHHhhccCCCCeEEEeCCCHH----HHHHHHHHHHHcCCCeEEEEe
Confidence 33233332 23455554441 221 2334444443 346677777777788888773
No 149
>1hi9_A Dciaa, dipeptide transport protein DPPA; hydrolase (protease), protease, D-aminopeptidase, decamer, SELF-compartmentalizing; 2.4A {Bacillus subtilis} SCOP: c.99.1.1
Probab=28.84 E-value=17 Score=35.01 Aligned_cols=145 Identities=18% Similarity=0.189 Sum_probs=79.2
Q ss_pred ccHHHHHHHHHHHcCCCEEEecCCcchH--HHHHhhhcCCCCeEEecCc----------hhHHHHhhhhhhhccCc-eEE
Q 007800 27 GTLGRHLARRLVEIGAKDVFSVPGDFNL--TLLDHLIAEPELNLVGCCN----------ELNAGYAADGYARSRGV-GAC 93 (589)
Q Consensus 27 ~~~a~~i~~~L~~~GV~~vfg~pG~~~~--~l~~al~~~~~i~~v~~~h----------E~~A~~~A~gyar~tg~-~v~ 93 (589)
..-..+.++.+.+.|.+.|.-.-+.... =+.+.|. +..+.|.... |.--+.+=.||.-..|. ++.
T Consensus 36 T~evnAai~ga~~~Ga~eV~V~DsHg~~~NLl~e~L~--~ra~li~G~prp~~Mm~Gld~sfD~v~fiGYHa~AG~~gvL 113 (274)
T 1hi9_A 36 TEEANYCIAEAFNSGCTEVLVNDSHSKMNNLMVEKLH--PEADLISGDVKPFSMVEGLDDTFRGALFLGYHARASTPGVM 113 (274)
T ss_dssp HHHHHHHHHHHHHTTCSEEEEEECSTTSCCSCTTTSC--TTSEEEEESCCTTGGGTTCCTTCSEEEEEEECCCTTSSSTT
T ss_pred HHHHHHHHHHHHHCCCeEEEEEccCCCcCCcChhHCC--cCeEEEeCCCCCcchhccccCCccEEEEeecCCCCCCCCcc
Confidence 3445667899999999999987654322 2334443 4566666543 22122223455433233 443
Q ss_pred EEeCCcch----------HH-HHHHHHHhhhcCCcEEEEeCCCCccccCCccceeeecCCCChHHHHHhhhcceeEEEEe
Q 007800 94 VVTFTVGG----------LS-VLNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCFQAITCSQAVV 162 (589)
Q Consensus 94 ~~t~GpG~----------~n-~~~~l~~A~~~~~PllvI~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tk~~~~v 162 (589)
.=|++-.. .. .+++. -|-.-++||+++|||......... .. ++ ...+.+=+.+.+++...
T Consensus 114 aHT~~~~~~~v~iNG~~~gE~~lna~-~Ag~~gVPV~lvsGDd~~~~e~~~-----~~--P~-~~tv~vK~~~gr~aa~~ 184 (274)
T 1hi9_A 114 SHSMIFGVRHFYINDRPVGELGLNAY-VAGYYDVPVLMVAGDDRAAKEAEE-----LI--PN-VTTAAVKQTISRSAVKC 184 (274)
T ss_dssp CCSSSTTEEEEEETTEEECHHHHHHH-HHHHTTCCEEEEEEEHHHHHHHHT-----TS--TT-CEEEEEEEEEETTEEEE
T ss_pred CCCCccceEEEEECCEEcCHHHHHHH-HHhhcCCCEEEEecCHHHHHHHHH-----hC--CC-CeEEEEeeccccccccc
Confidence 32222111 11 12332 244569999999998543211000 00 00 00122334455678888
Q ss_pred CChhhHHHHHHHHHHHhHhc
Q 007800 163 NNLGDAHELIDTAISTALKE 182 (589)
Q Consensus 163 ~~~~~~~~~l~~A~~~a~~~ 182 (589)
.+|+.+.+.|+++.+.|...
T Consensus 185 ~~p~~a~~~I~~aa~~Al~~ 204 (274)
T 1hi9_A 185 LSPAKRGRLLTEKTAFALQN 204 (274)
T ss_dssp CCHHHHHHHHHHHHHHHHHS
T ss_pred CCHHHHHHHHHHHHHHHHhh
Confidence 89999999999999999863
No 150
>2dko_A Caspase-3; low barrier hydrogen bond, caspase, drug design, radiation D tetrahedral intermediate, protease; 1.06A {Homo sapiens} PDB: 1nme_A 2h5i_A 2h5j_A 2h65_A 2xyg_A* 2xyh_A 2xyp_A* 2xzd_A 2xzt_A 2y0b_A 3edq_A 1gfw_A 1re1_A* 1pau_A* 1rhk_A* 1rhm_A* 1rhq_A* 1rhr_A* 1rhu_A* 1rhj_A* ...
Probab=28.83 E-value=66 Score=27.59 Aligned_cols=73 Identities=12% Similarity=0.224 Sum_probs=40.5
Q ss_pred eEEEEEeCCchhhhhhhcCCCCCCCCCCChHHHHHHccCCCCCccEEEeC--CHHHHHHHHHHhhhcC-CCCeEEEEEEc
Q 007800 486 SIIFLINNGGYTIEVEIHDGPYNVIKNWDYTGLVNAIHNGEGKCWTAKVR--SEDELTEAMKTATGEQ-KDSLCFIEVFV 562 (589)
Q Consensus 486 v~ivv~nN~~~~~~~~~~~~~~~~~~~~d~~~la~a~G~~~~~~~~~~v~--~~~~l~~al~~a~~~~-~~gp~viev~~ 562 (589)
=+.+|+||..|.....+..+..++.+.-.+.++.+.+|+ +...-. +.+++.+.|++..... ...-.+|-+..
T Consensus 17 G~alIinn~~F~~~~~l~~R~Gt~~D~~~L~~~f~~LgF-----~V~~~~dlt~~em~~~l~~~~~~dh~~~dc~vv~il 91 (146)
T 2dko_A 17 GLCIIINNKNFHKSTGMTSRSGTDVDAANLRETFRNLKY-----EVRNKNDLTREEIVELMRDVSKEDHSKRSSFVCVLL 91 (146)
T ss_dssp EEEEEEECCCCCGGGTCCCCTTHHHHHHHHHHHHHHTTC-----EEEEEESCCHHHHHHHHHHHHHSCCTTEEEEEEEEE
T ss_pred eEEEEEeccccCCCCCcccCCCCHHHHHHHHHHHHHCCC-----EEEEeeCCCHHHHHHHHHHHHHhhcCCCCeEEEEec
Confidence 367888999775311111222222222256777788887 433332 7889999998886521 23344554444
Q ss_pred C
Q 007800 563 H 563 (589)
Q Consensus 563 ~ 563 (589)
.
T Consensus 92 S 92 (146)
T 2dko_A 92 S 92 (146)
T ss_dssp S
T ss_pred c
Confidence 4
No 151
>2l69_A Rossmann 2X3 fold protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Artificial gene}
Probab=28.50 E-value=1.9e+02 Score=22.35 Aligned_cols=31 Identities=13% Similarity=0.159 Sum_probs=23.6
Q ss_pred ChHHHHHHccCCCCCccEEEeCCHHHHHHHHHHhhh
Q 007800 514 DYTGLVNAIHNGEGKCWTAKVRSEDELTEAMKTATG 549 (589)
Q Consensus 514 d~~~la~a~G~~~~~~~~~~v~~~~~l~~al~~a~~ 549 (589)
.|..-.+--|+ +..+|.++++++..|++.+.
T Consensus 92 efsrevrrrgf-----evrtvtspddfkkslerlir 122 (134)
T 2l69_A 92 EFSREVRRRGF-----EVRTVTSPDDFKKSLERLIR 122 (134)
T ss_dssp HHHHHHHHTTC-----CEEEESSHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCc-----eEEEecChHHHHHHHHHHHH
Confidence 35555556677 78889999999999888764
No 152
>3n0v_A Formyltetrahydrofolate deformylase; formyl transferase, ACT domain, structural genomics, joint C structural genomics, JCSG; HET: MSE; 2.25A {Pseudomonas putida}
Probab=27.99 E-value=53 Score=31.75 Aligned_cols=65 Identities=12% Similarity=0.019 Sum_probs=39.5
Q ss_pred CcEEEEEcchhhcccHHHHHHHHHh---CCCeEEEEEeCCchhhhhhhcCCCCCCCCCCChHHHHHHccCCCCCccEEEe
Q 007800 458 KRVIACIGDGSFQVTAQEISTMIRC---GQRSIIFLINNGGYTIEVEIHDGPYNVIKNWDYTGLVNAIHNGEGKCWTAKV 534 (589)
Q Consensus 458 ~~vv~i~GDGsf~~~~~el~ta~~~---~l~v~ivv~nN~~~~~~~~~~~~~~~~~~~~d~~~la~a~G~~~~~~~~~~v 534 (589)
|-+|++.|.|+ ++++|..+.+. +..+..||-|+. |...+|+.+|+ +.+.+
T Consensus 92 ri~vl~Sg~g~---~l~~ll~~~~~g~l~~~i~~Visn~~-------------------~~~~~A~~~gI-----p~~~~ 144 (286)
T 3n0v_A 92 KVVIMVSKADH---CLNDLLYRQRIGQLGMDVVAVVSNHP-------------------DLEPLAHWHKI-----PYYHF 144 (286)
T ss_dssp EEEEEESSCCH---HHHHHHHHHHTTSSCCEEEEEEESSS-------------------TTHHHHHHTTC-----CEEEC
T ss_pred EEEEEEeCCCC---CHHHHHHHHHCCCCCcEEEEEEeCcH-------------------HHHHHHHHcCC-----CEEEe
Confidence 45677788874 67777776654 345666666655 34567899998 66654
Q ss_pred C----CHHHHHHHHHHhhh
Q 007800 535 R----SEDELTEAMKTATG 549 (589)
Q Consensus 535 ~----~~~~l~~al~~a~~ 549 (589)
. +.++.++.+.+.+.
T Consensus 145 ~~~~~~r~~~~~~~~~~l~ 163 (286)
T 3n0v_A 145 ALDPKDKPGQERKVLQVIE 163 (286)
T ss_dssp CCBTTBHHHHHHHHHHHHH
T ss_pred CCCcCCHHHHHHHHHHHHH
Confidence 3 34444444444443
No 153
>3nbm_A PTS system, lactose-specific IIBC components; PTS_IIB_LACTOSE, phosphoenolpyruvate:carbohydrate system, P- phosphorylation; HET: MSE; 1.30A {Streptococcus pneumoniae}
Probab=27.96 E-value=79 Score=25.53 Aligned_cols=34 Identities=18% Similarity=0.063 Sum_probs=28.1
Q ss_pred CCCEEEeCcccchhhHHHHHHHHHHHhCCceEEc
Q 007800 236 VKPVLVGGPNIRVAKAQKAFIELADATGYPIAIM 269 (589)
Q Consensus 236 ~rpviv~G~g~~~~~~~~~l~~lae~~~~Pv~tt 269 (589)
.|.+++++.|...+-....+++.|+..|+++-..
T Consensus 7 mkIlL~C~aGmSTsllv~km~~~a~~~gi~v~i~ 40 (108)
T 3nbm_A 7 LKVLVLCAGSGTSAQLANAINEGANLTEVRVIAN 40 (108)
T ss_dssp EEEEEEESSSSHHHHHHHHHHHHHHHHTCSEEEE
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHCCCceEEE
Confidence 4578889999877777889999999999997653
No 154
>3o1l_A Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 2.20A {Pseudomonas syringae PV}
Probab=27.71 E-value=58 Score=31.72 Aligned_cols=65 Identities=9% Similarity=0.050 Sum_probs=39.8
Q ss_pred CcEEEEEcchhhcccHHHHHHHHHh---CCCeEEEEEeCCchhhhhhhcCCCCCCCCCCChHHHHHHccCCCCCccEEEe
Q 007800 458 KRVIACIGDGSFQVTAQEISTMIRC---GQRSIIFLINNGGYTIEVEIHDGPYNVIKNWDYTGLVNAIHNGEGKCWTAKV 534 (589)
Q Consensus 458 ~~vv~i~GDGsf~~~~~el~ta~~~---~l~v~ivv~nN~~~~~~~~~~~~~~~~~~~~d~~~la~a~G~~~~~~~~~~v 534 (589)
|-+|++.|.|+ ++++|..+.+. +..+..||-|+. |..++|+.+|+ +.+.+
T Consensus 107 ri~vl~Sg~g~---nl~~ll~~~~~g~l~~~I~~Visn~~-------------------~~~~~A~~~gI-----p~~~~ 159 (302)
T 3o1l_A 107 RVVLMASRESH---CLADLLHRWHSDELDCDIACVISNHQ-------------------DLRSMVEWHDI-----PYYHV 159 (302)
T ss_dssp EEEEEECSCCH---HHHHHHHHHHTTCSCSEEEEEEESSS-------------------TTHHHHHTTTC-----CEEEC
T ss_pred EEEEEEeCCch---hHHHHHHHHHCCCCCcEEEEEEECcH-------------------HHHHHHHHcCC-----CEEEc
Confidence 44677788875 67788776664 345666666654 34568899998 66666
Q ss_pred C----CHHHHHHHHHHhhh
Q 007800 535 R----SEDELTEAMKTATG 549 (589)
Q Consensus 535 ~----~~~~l~~al~~a~~ 549 (589)
. +.++.++.+.+.+.
T Consensus 160 ~~~~~~r~~~~~~~~~~l~ 178 (302)
T 3o1l_A 160 PVDPKDKEPAFAEVSRLVG 178 (302)
T ss_dssp CCCSSCCHHHHHHHHHHHH
T ss_pred CCCcCCHHHHHHHHHHHHH
Confidence 2 33344444444443
No 155
>1u7z_A Coenzyme A biosynthesis bifunctional protein coabc; ligase; HET: PMT; 2.30A {Escherichia coli} SCOP: c.72.3.1 PDB: 1u7w_A* 1u7u_A* 1u80_A*
Probab=27.61 E-value=1.1e+02 Score=28.46 Aligned_cols=81 Identities=15% Similarity=0.162 Sum_probs=46.4
Q ss_pred CCCCEEEecCCccccccccccccCCCeeEeccCccchhhHHHHHHHHhhhcCCCcEEEEEcchhhc----------ccHH
Q 007800 405 SGDTAVIAETGDSWFNCQKLRLPENCGYEFQMQYGSIGWSVGATLGYAQAAKDKRVIACIGDGSFQ----------VTAQ 474 (589)
Q Consensus 405 ~~~~iiv~d~G~~~~~~~~~~~~~~~~~~~~~~~g~mG~~l~~aiGaala~~~~~vv~i~GDGsf~----------~~~~ 474 (589)
....++|+..|+.-.. ++-+|+.|...|.||++++-++. ..+..|+++.|+.+.. -+..
T Consensus 7 ~gk~vlVTgG~T~E~i-------DpVR~itN~SSg~iG~aiA~~~~----~~Ga~V~l~~~~~~l~~~~g~~~~dv~~~~ 75 (226)
T 1u7z_A 7 KHLNIMITAGPTREPL-------DPVRYISDHSSGKMGFAIAAAAA----RRGANVTLVSGPVSLPTPPFVKRVDVMTAL 75 (226)
T ss_dssp TTCEEEEEESBCEEES-------SSSEEEEECCCSHHHHHHHHHHH----HTTCEEEEEECSCCCCCCTTEEEEECCSHH
T ss_pred CCCEEEEECCCCCccc-------CceeeccCCCccHHHHHHHHHHH----HCCCEEEEEECCcccccCCCCeEEccCcHH
Confidence 3455666654443211 24569999999999988876553 2356677777754321 1466
Q ss_pred HHHHHHHhCCCeEEEEEeCCch
Q 007800 475 EISTMIRCGQRSIIFLINNGGY 496 (589)
Q Consensus 475 el~ta~~~~l~v~ivv~nN~~~ 496 (589)
++..++.....-.=+++||-+-
T Consensus 76 ~~~~~v~~~~~~~Dili~~Aav 97 (226)
T 1u7z_A 76 EMEAAVNASVQQQNIFIGCAAV 97 (226)
T ss_dssp HHHHHHHHHGGGCSEEEECCBC
T ss_pred HHHHHHHHhcCCCCEEEECCcc
Confidence 6666554322212356677653
No 156
>3s99_A Basic membrane lipoprotein; ssgcid, structural genomics, SEA structural genomics center for infectious disease, adenine; HET: ADE; 2.05A {Brucella melitensis biovar abortus}
Probab=27.46 E-value=2.4e+02 Score=27.95 Aligned_cols=41 Identities=12% Similarity=0.188 Sum_probs=26.6
Q ss_pred HHHHHHHHHcCCCEEEecCCcchHHHHHhhhcCCCCeEEec
Q 007800 31 RHLARRLVEIGAKDVFSVPGDFNLTLLDHLIAEPELNLVGC 71 (589)
Q Consensus 31 ~~i~~~L~~~GV~~vfg~pG~~~~~l~~al~~~~~i~~v~~ 71 (589)
+..++.|.+.|++-||+.......++.+...+.|+++|+.+
T Consensus 76 ~~~l~~l~~~g~d~Ii~~g~~~~~~~~~vA~~~Pdv~fv~i 116 (356)
T 3s99_A 76 ERSIKRIARAGNKLIFTTSFGYMDPTVKVAKKFPDVKFEHA 116 (356)
T ss_dssp HHHHHHHHHTTCSEEEECSGGGHHHHHHHHTTCTTSEEEEE
T ss_pred HHHHHHHHHCCCCEEEECCHHHHHHHHHHHHHCCCCEEEEE
Confidence 34567778888888888754555555555555566666654
No 157
>2zxr_A Single-stranded DNA specific exonuclease RECJ; DNA repair, hydrolase; 2.15A {Thermus thermophilus} PDB: 2zxo_A 2zxp_A 1ir6_A
Probab=27.25 E-value=1.6e+02 Score=32.16 Aligned_cols=104 Identities=15% Similarity=0.157 Sum_probs=47.5
Q ss_pred HHHHHHHHHHHHHhcCCCEEEeCcccchhhHHHHHHHHHHHhCCceEEccCCccCCCCCCCCceeeecCCCCCHHHHHHh
Q 007800 221 LEAAVEATADFLNKAVKPVLVGGPNIRVAKAQKAFIELADATGYPIAIMPSGKGLVPEHHPHFIGTYWGAVSSSFCGEIV 300 (589)
Q Consensus 221 ~~~~i~~~~~~L~~a~rpviv~G~g~~~~~~~~~l~~lae~~~~Pv~tt~~~~g~~~~~~pl~~G~~~g~~~~~~~~~~l 300 (589)
-+..++++.+.|.+.++.+|+.-..+..-.+...+.++.+++|..+..- +|...+-..|.. . ....++.
T Consensus 58 m~~Av~~i~~aI~~~ekI~I~GH~D~DGi~Saa~L~~~L~~lG~~v~~~------ip~r~~egygl~----~-~~I~~~~ 126 (666)
T 2zxr_A 58 LREAAALLEEALRQGKRIRVHGDYDADGLTGTAILVRGLAALGADVHPF------IPHRLEEGYGVL----M-ERVPEHL 126 (666)
T ss_dssp HHHHHHHHHHHHHTTCEEEEECCSSHHHHHHHHHHHHHHHHTTCEEEEC------CC-----------------------
T ss_pred HHHHHHHHHHHHHcCCeEEEEeccCCchHHHHHHHHHHHHHcCCcEEEe------cCCCCCccccCC----H-HHHHhhc
Confidence 3556788888888876655554443333345667888899999876542 332222222221 1 1223333
Q ss_pred hhcCEEEEeCCCcCCcccccccccCCCCceEEEcCC
Q 007800 301 ESADAYVFVGPIFNDYSSVGYSLLIKKEKAIIVQPH 336 (589)
Q Consensus 301 ~~aD~vl~lG~~~~~~~~~~~~~~~~~~~~i~id~d 336 (589)
.+.|+||++.+...+...... ....+.++|.+|..
T Consensus 127 ~~~~LIItVD~G~~s~~~i~~-a~~~g~~VIViDHH 161 (666)
T 2zxr_A 127 EASDLFLTVDCGITNHAELRE-LLENGVEVIVTDHH 161 (666)
T ss_dssp --CCEEEESCCC---------------CEEEEECCC
T ss_pred cCCCEEEEEcCCchhhhhHHH-HHhCCCCEEEECCc
Confidence 578999999875443322111 11123467777753
No 158
>3v7e_A Ribosome-associated protein L7AE-like; RNA-protein complex, K-turn, L7AE-like, A member L7AE/L30E superfamily; HET: SAM; 2.80A {Bacillus subtilis}
Probab=26.77 E-value=87 Score=23.73 Aligned_cols=44 Identities=14% Similarity=0.228 Sum_probs=33.2
Q ss_pred HHHHHHHHhcCCCEEEeCcccchhhHHHHHHHHHHHhCCceEEcc
Q 007800 226 EATADFLNKAVKPVLVGGPNIRVAKAQKAFIELADATGYPIAIMP 270 (589)
Q Consensus 226 ~~~~~~L~~a~rpviv~G~g~~~~~~~~~l~~lae~~~~Pv~tt~ 270 (589)
++..+.|++.+--++++-..+.. +....+..+++..++|++...
T Consensus 17 ~~v~kai~~gkaklViiA~D~~~-~~~~~i~~lc~~~~Ip~~~v~ 60 (82)
T 3v7e_A 17 KQTVKALKRGSVKEVVVAKDADP-ILTSSVVSLAEDQGISVSMVE 60 (82)
T ss_dssp HHHHHHHTTTCEEEEEEETTSCH-HHHHHHHHHHHHHTCCEEEES
T ss_pred HHHHHHHHcCCeeEEEEeCCCCH-HHHHHHHHHHHHcCCCEEEEC
Confidence 45667777766666666666654 578889999999999999744
No 159
>4au1_A Precorrin-8X methylmutase; isomerase, HBA; HET: P8X; 1.45A {Rhodobacter capsulatus}
Probab=26.42 E-value=71 Score=29.60 Aligned_cols=52 Identities=19% Similarity=0.193 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHHhcC--CCEEEeCcccchhhHHHHHHHHHHHhCCceEEccCCc
Q 007800 222 EAAVEATADFLNKAV--KPVLVGGPNIRVAKAQKAFIELADATGYPIAIMPSGK 273 (589)
Q Consensus 222 ~~~i~~~~~~L~~a~--rpviv~G~g~~~~~~~~~l~~lae~~~~Pv~tt~~~~ 273 (589)
+..+-++.++|.+.+ ||.+|+|-=+..-++.+.=.+|++..++|.++.-.-|
T Consensus 158 PTAL~~Lleli~~~~~~rPalVIG~PVGFVgAaESK~~L~~~~~vP~I~~~Grk 211 (229)
T 4au1_A 158 PTALFHLLNMLEDPACPRPAAIIGCPVGFIGAAESKAALAVANPVPWVIVEGRL 211 (229)
T ss_dssp HHHHHHHHHHTTSTTSCCCSEEEECCCCSSSHHHHHHHHHHHCCSSEEEECSSC
T ss_pred HHHHHHHHHHHHhcCCCCCCEEEEcCCCccChHHHHHHHHhCCCCCEEEEecCC
Confidence 356778888887643 8999988877665565555567777789999855444
No 160
>2r48_A Phosphotransferase system (PTS) mannose-specific iibca component; PTS system, fructose specific IIB PFAM02379, PSI-2, MCSG; 1.80A {Bacillus subtilis subsp} SCOP: c.44.2.2
Probab=26.06 E-value=60 Score=26.21 Aligned_cols=66 Identities=21% Similarity=0.234 Sum_probs=41.6
Q ss_pred hHHHHHHHHHHHhCCceEEccCCccCCCCCCCCceeeecCCCCCHHHHHHhhhcCEEEEeCCCcCCcccccccccCCCCc
Q 007800 250 KAQKAFIELADATGYPIAIMPSGKGLVPEHHPHFIGTYWGAVSSSFCGEIVESADAYVFVGPIFNDYSSVGYSLLIKKEK 329 (589)
Q Consensus 250 ~~~~~l~~lae~~~~Pv~tt~~~~g~~~~~~pl~~G~~~g~~~~~~~~~~l~~aD~vl~lG~~~~~~~~~~~~~~~~~~~ 329 (589)
=+.+.|++-|+++|+.+-...+|. .|.- ..+ ..+-+.+||+||+.+....+... +.+.+
T Consensus 20 mAaeaL~~aA~~~G~~ikVEtqGs----------~G~~-n~L----t~~~I~~Ad~VIiA~d~~v~~~R------F~GK~ 78 (106)
T 2r48_A 20 MAAENLQKAADRLGVSIKVETQGG----------IGVE-NKL----TEEEIREADAIIIAADRSVNKDR------FIGKK 78 (106)
T ss_dssp HHHHHHHHHHHHHTCEEEEEEEET----------TEEE-SCC----CHHHHHHCSEEEEEESSCCCCGG------GTTSB
T ss_pred HHHHHHHHHHHHCCCeEEEEecCC----------CCcc-CCC----CHHHHHhCCEEEEEeCCccCHhH------cCCCe
Confidence 368899999999999988766653 1221 111 23467899999999864433221 22446
Q ss_pred eEEEcCC
Q 007800 330 AIIVQPH 336 (589)
Q Consensus 330 ~i~id~d 336 (589)
++++++.
T Consensus 79 v~~~~v~ 85 (106)
T 2r48_A 79 LLSVGVQ 85 (106)
T ss_dssp EEEECHH
T ss_pred EEEeCHH
Confidence 6666543
No 161
>3czc_A RMPB; alpha/beta sandwich, phosphotransferase system, transferase, transport; 2.02A {Streptococcus mutans}
Probab=26.03 E-value=88 Score=25.13 Aligned_cols=30 Identities=17% Similarity=0.121 Sum_probs=24.8
Q ss_pred CCCEEEeCcccchhhHHH-HHHHHHHHhCCc
Q 007800 236 VKPVLVGGPNIRVAKAQK-AFIELADATGYP 265 (589)
Q Consensus 236 ~rpviv~G~g~~~~~~~~-~l~~lae~~~~P 265 (589)
+|.++++|.|...+...+ .+++.+++.|++
T Consensus 19 ~kIlvvC~sG~gTS~m~~~kl~~~~~~~gi~ 49 (110)
T 3czc_A 19 VKVLTACGNGMGSSMVIKMKVENALRQLGVS 49 (110)
T ss_dssp EEEEEECCCCHHHHHHHHHHHHHHHHHTTCC
T ss_pred cEEEEECCCcHHHHHHHHHHHHHHHHHcCCC
Confidence 567888999988876555 899999999987
No 162
>2q5c_A NTRC family transcriptional regulator; structural genomics, protein structure initiative; HET: SO4 GOL; 1.49A {Clostridium acetobutylicum atcc 824}
Probab=25.94 E-value=1.9e+02 Score=25.88 Aligned_cols=85 Identities=19% Similarity=0.155 Sum_probs=58.1
Q ss_pred CcEEEEEcchhhcccHHHHHHHHHhCCCeEEEEEeCCchhh--hhhhc-CCCCCCCCCCChHHHHHHccCCCCCccEEEe
Q 007800 458 KRVIACIGDGSFQVTAQEISTMIRCGQRSIIFLINNGGYTI--EVEIH-DGPYNVIKNWDYTGLVNAIHNGEGKCWTAKV 534 (589)
Q Consensus 458 ~~vv~i~GDGsf~~~~~el~ta~~~~l~v~ivv~nN~~~~~--~~~~~-~~~~~~~~~~d~~~la~a~G~~~~~~~~~~v 534 (589)
..-|+++|=+.....+..+... .++++.+..++|..-.- -.+.. .+.-.-+...--.++|+-+|. +++.+
T Consensus 94 ~~kIavvg~~~~~~~~~~~~~l--l~~~i~~~~~~~~~e~~~~i~~l~~~G~~vvVG~~~~~~~A~~~Gl-----~~vli 166 (196)
T 2q5c_A 94 GNELALIAYKHSIVDKHEIEAM--LGVKIKEFLFSSEDEITTLISKVKTENIKIVVSGKTVTDEAIKQGL-----YGETI 166 (196)
T ss_dssp CSEEEEEEESSCSSCHHHHHHH--HTCEEEEEEECSGGGHHHHHHHHHHTTCCEEEECHHHHHHHHHTTC-----EEEEC
T ss_pred CCcEEEEeCcchhhHHHHHHHH--hCCceEEEEeCCHHHHHHHHHHHHHCCCeEEECCHHHHHHHHHcCC-----cEEEE
Confidence 3478999988888777665543 57788888887764322 11111 221111233345889999999 99999
Q ss_pred CC-HHHHHHHHHHhhh
Q 007800 535 RS-EDELTEAMKTATG 549 (589)
Q Consensus 535 ~~-~~~l~~al~~a~~ 549 (589)
.+ .+.++.||++|..
T Consensus 167 ~sg~eSI~~Ai~eA~~ 182 (196)
T 2q5c_A 167 NSGEESLRRAIEEALN 182 (196)
T ss_dssp CCCHHHHHHHHHHHHH
T ss_pred ecCHHHHHHHHHHHHH
Confidence 87 9999999999975
No 163
>3p45_A Caspase-6; protease, huntington'S disease, physio PH, competitive inhibition, hydrolase; 2.53A {Homo sapiens}
Probab=25.60 E-value=62 Score=28.85 Aligned_cols=59 Identities=8% Similarity=0.072 Sum_probs=35.6
Q ss_pred eEEEEEeCCchhhhhhhcCCCCCCCCCCChHHHHHHccCCCCCccEEEeC--CHHHHHHHHHHhhh
Q 007800 486 SIIFLINNGGYTIEVEIHDGPYNVIKNWDYTGLVNAIHNGEGKCWTAKVR--SEDELTEAMKTATG 549 (589)
Q Consensus 486 v~ivv~nN~~~~~~~~~~~~~~~~~~~~d~~~la~a~G~~~~~~~~~~v~--~~~~l~~al~~a~~ 549 (589)
=+.+|+||..|.....+..+..++...-.+.++.+.+|+ +...-. +.+++.+.|+++..
T Consensus 45 G~aLIinn~~F~~~~~l~~R~Gt~~D~~~L~~~F~~LGF-----~V~~~~dlt~~em~~~l~~~~~ 105 (179)
T 3p45_A 45 GIALIFNHERFFWHLTLPERRGTCADRDNLTRRFSDLGF-----EVKCFNDLKAEELLLKIHEVST 105 (179)
T ss_dssp CEEEEEECCSCCGGGCCCCCTTHHHHHHHHHHHHHHTTC-----EEEEEESCCHHHHHHHHHHHHT
T ss_pred CEEEEEeCcccCCCCCCCCCCCCHHHHHHHHHHHHHCCC-----EEEEEeCCCHHHHHHHHHHHhh
Confidence 368899999875311111222222222356777888887 443333 88899999998754
No 164
>2gk4_A Conserved hypothetical protein; alpha-beta-alpha sandwich, flavoprotein, structural genomics protein structure initiative; 1.83A {Streptococcus pneumoniae}
Probab=25.48 E-value=1.2e+02 Score=28.13 Aligned_cols=63 Identities=11% Similarity=0.074 Sum_probs=40.0
Q ss_pred CCeeEeccCccchhhHHHHHHHHhhhcCCCcEEEEEcchhhcc------------cHHHHHHHHHhCCCeEEEEEeCCc
Q 007800 429 NCGYEFQMQYGSIGWSVGATLGYAQAAKDKRVIACIGDGSFQV------------TAQEISTMIRCGQRSIIFLINNGG 495 (589)
Q Consensus 429 ~~~~~~~~~~g~mG~~l~~aiGaala~~~~~vv~i~GDGsf~~------------~~~el~ta~~~~l~v~ivv~nN~~ 495 (589)
+-+|+.|...|.||++++-++- ..+..|+++.|..+..- +..++..++....+-.=++++|.+
T Consensus 19 pVR~ItN~SSG~mG~aiA~~~~----~~Ga~V~lv~~~~~~~~~~~~~~~~~~v~s~~em~~~v~~~~~~~Dili~aAA 93 (232)
T 2gk4_A 19 SVRSITNHSTGHLGKIITETLL----SAGYEVCLITTKRALKPEPHPNLSIREITNTKDLLIEMQERVQDYQVLIHSMA 93 (232)
T ss_dssp SSEEEEECCCCHHHHHHHHHHH----HTTCEEEEEECTTSCCCCCCTTEEEEECCSHHHHHHHHHHHGGGCSEEEECSB
T ss_pred ceeeccCCCCCHHHHHHHHHHH----HCCCEEEEEeCCccccccCCCCeEEEEHhHHHHHHHHHHHhcCCCCEEEEcCc
Confidence 4569999999999998866553 23667888888765321 467776666532221224556654
No 165
>3l49_A ABC sugar (ribose) transporter, periplasmic substrate-binding subunit; sugar binding/transporter, structural genomics, PSI; HET: UNL; 2.30A {Rhodobacter sphaeroides}
Probab=25.27 E-value=4e+02 Score=24.45 Aligned_cols=88 Identities=18% Similarity=0.127 Sum_probs=49.4
Q ss_pred ccHHHHHHHHHHH--cCCCEEEecCCcc--------hHHHHHhhhcCCCCeEEec------C-chhHHHHhhhhhhhccC
Q 007800 27 GTLGRHLARRLVE--IGAKDVFSVPGDF--------NLTLLDHLIAEPELNLVGC------C-NELNAGYAADGYARSRG 89 (589)
Q Consensus 27 ~~~a~~i~~~L~~--~GV~~vfg~pG~~--------~~~l~~al~~~~~i~~v~~------~-hE~~A~~~A~gyar~tg 89 (589)
..++..+++.|.+ .|-++|.-+-|.. ...+.+++.+.++++++.. . +...+-.++.-+-+...
T Consensus 108 ~~~g~~~~~~l~~~~~g~~~i~~i~~~~~~~~~~~R~~gf~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 187 (291)
T 3l49_A 108 YSIGAELALQMVADLGGKGNVLVFNGFYSVPVCKIRYDQMKYVLEAFPDVKIIEPELRDVIPNTIQSAYSNVTDMLTKYP 187 (291)
T ss_dssp HHHHHHHHHHHHHHHTTCEEEEEECSCTTSHHHHHHHHHHHHHHHTCTTEEECSSCBCCCSSSHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHcCCCceEEEEeCCCCCchHHHHHHHHHHHHHHCCCCEEEeeeccCCCCCCHHHHHHHHHHHHHhCC
Confidence 4677888999999 8998887776542 3345566665545654321 1 12222222222223333
Q ss_pred ---c-eEEEEeCCcchHHHHHHHHHhhhc
Q 007800 90 ---V-GACVVTFTVGGLSVLNAIAGAYSE 114 (589)
Q Consensus 90 ---~-~v~~~t~GpG~~n~~~~l~~A~~~ 114 (589)
. -++++.+...+..++.++.++-..
T Consensus 188 ~~~~~~ai~~~~d~~a~g~~~al~~~g~~ 216 (291)
T 3l49_A 188 NEGDVGAIWACWDVPMIGATQALQAAGRT 216 (291)
T ss_dssp STTSCCEEEESSHHHHHHHHHHHHHTTCC
T ss_pred CcCCcCEEEECCCchHHHHHHHHHHcCCC
Confidence 4 566666666656666666655433
No 166
>3bch_A 40S ribosomal protein SA; laminin receptor, P40 ribosomal protein, acetylation, cytoplasm, phosphorylation, polymorphism; 2.15A {Homo sapiens}
Probab=25.13 E-value=1.8e+02 Score=27.43 Aligned_cols=73 Identities=19% Similarity=0.136 Sum_probs=46.2
Q ss_pred HHHHHHHHHHHhcCCC--EEEeCcccchhhHHHHHHHHHHHhCCceEEccCCccCCCCCCCCceeeecCCCCCHHHHHHh
Q 007800 223 AAVEATADFLNKAVKP--VLVGGPNIRVAKAQKAFIELADATGYPIAIMPSGKGLVPEHHPHFIGTYWGAVSSSFCGEIV 300 (589)
Q Consensus 223 ~~i~~~~~~L~~a~rp--viv~G~g~~~~~~~~~l~~lae~~~~Pv~tt~~~~g~~~~~~pl~~G~~~g~~~~~~~~~~l 300 (589)
..+.+|+..+..+++| ++++|..- .+.+.+.++|++.|.+.+..---.|.+-. +. ...+
T Consensus 89 ~~L~~A~~~i~~~~~~~~iLfVgTk~---~aq~~V~~~A~~~g~~yv~~RWlgG~LTN----~~------------~~~f 149 (253)
T 3bch_A 89 EKLLLAARAIVAIENPADVSVISSRN---TGQRAVLKFAAATGATPIAGRFTPGTFTN----QI------------QAAF 149 (253)
T ss_dssp HHHHHHHHHHHTCSSGGGEEEEECSH---HHHHHHHHHHHHHCCEEEESCCCTTTTTC----CS------------CSTT
T ss_pred HHHHHHHHHHHHHhCCCeEEEEeCCH---HHHHHHHHHHHHhCCeeecceecCCcccC----cc------------cccc
Confidence 4577777877755444 77777533 36788999999999988763322233321 10 0124
Q ss_pred hhcCEEEEeCCCcC
Q 007800 301 ESADAYVFVGPIFN 314 (589)
Q Consensus 301 ~~aD~vl~lG~~~~ 314 (589)
...|+|+++..+-+
T Consensus 150 ~~PdlliV~Dp~~e 163 (253)
T 3bch_A 150 REPRLLVVTDPRAD 163 (253)
T ss_dssp CSCSEEEESCTTTT
T ss_pred CCCCEEEEECCCcc
Confidence 67999999986543
No 167
>2yic_A 2-oxoglutarate decarboxylase; lyase; HET: TPP; 1.96A {Mycobacterium smegmatis} PDB: 2xta_A* 2y0p_A* 2xt9_A* 2yid_A*
Probab=24.84 E-value=87 Score=35.39 Aligned_cols=97 Identities=14% Similarity=0.037 Sum_probs=56.7
Q ss_pred eEEEEeCCcchH----HHHHHHHHhhhcCCc---EEEEeCCCCccccCCccceeeecCCCChHHHHHhhhcceeEEEEeC
Q 007800 91 GACVVTFTVGGL----SVLNAIAGAYSENLP---VICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCFQAITCSQAVVN 163 (589)
Q Consensus 91 ~v~~~t~GpG~~----n~~~~l~~A~~~~~P---llvI~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tk~~~~v~ 163 (589)
.++++..|=|++ +..=++.-|..-+.| +|+|.-+.... ..+.....++ ...+ .+.++.+---..++.
T Consensus 278 ~~vv~~~GDGa~~~eG~v~Ealn~A~~~~lp~g~vi~iv~NN~~g-~st~~~~~~s--~~~~---~~~a~a~G~p~~~Vd 351 (868)
T 2yic_A 278 VVPLMLHGDAAFAGQGVVAETLNLALLRGYRTGGTIHIVVNNQIG-FTTAPTDSRS--SEYC---TDVAKMIGAPIFHVN 351 (868)
T ss_dssp EEEEEEEEHHHHHHCHHHHHHHTTTTCTTTCCSCCEEEEEECSCB-TTBCHHHHCS--SSST---TGGGGGGTCCEEEEE
T ss_pred ceEEEEECCcccccccHHHHHHHHHHhcCCCCCCeEEEEEcCCcc-cccCcccccc--ccCH---HHHHHhCCCcEEEEe
Confidence 677777888873 333344446667888 88887654221 1111000000 0111 223444333344454
Q ss_pred --ChhhHHHHHHHHHHHhHhcCCcEEEEeCCC
Q 007800 164 --NLGDAHELIDTAISTALKESKPVYISISCN 193 (589)
Q Consensus 164 --~~~~~~~~l~~A~~~a~~~~gPV~i~iP~d 193 (589)
+++++...+++|++.+....+||.|++-..
T Consensus 352 G~D~~av~~a~~~A~~~ar~~~~PvlIe~~ty 383 (868)
T 2yic_A 352 GDDPEACAWVARLAVDFRQAFKKDVVIDMLCY 383 (868)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHCCCEEEEEECC
T ss_pred CCCHHHHHHHHHHHHHHHHhCCCCEEEEEEee
Confidence 688888899999888888889999998644
No 168
>2ioj_A Hypothetical protein AF_1212; NYSGXRC, PFAM:DRTGG, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.15A {Archaeoglobus fulgidus} SCOP: c.98.2.2
Probab=24.75 E-value=69 Score=26.89 Aligned_cols=34 Identities=15% Similarity=0.225 Sum_probs=22.6
Q ss_pred CCCEEEeCcccchhhHHHHHHHHHHHhCCceEEccCC
Q 007800 236 VKPVLVGGPNIRVAKAQKAFIELADATGYPIAIMPSG 272 (589)
Q Consensus 236 ~rpviv~G~g~~~~~~~~~l~~lae~~~~Pv~tt~~~ 272 (589)
+-|.|++-+|.. -.+.+.++|++.++||+.|...
T Consensus 74 ~~~~iIlt~g~~---~~~~i~~~A~~~~ipvl~t~~~ 107 (139)
T 2ioj_A 74 NVRCLILTGNLE---PVQLVLTKAEERGVPVILTGHD 107 (139)
T ss_dssp TEEEEEEETTCC---CCHHHHHHHHHHTCCEEECSSC
T ss_pred CCcEEEEcCCCC---CCHHHHHHHHHCCCeEEEECCC
Confidence 334444443433 3467789999999999987653
No 169
>3da8_A Probable 5'-phosphoribosylglycinamide formyltransferase PURN; glycinamide ribonucleotide transformylase, structure; 1.30A {Mycobacterium tuberculosis} PDB: 3dcj_A*
Probab=24.64 E-value=1.2e+02 Score=27.86 Aligned_cols=89 Identities=15% Similarity=0.078 Sum_probs=49.2
Q ss_pred CcEEEEEcchhhcccHHHHHHHHHhCC--CeEEEEEeCCchhhhhhhcCCCCCCCCCCChHHHHHHccCCCCCccEEEeC
Q 007800 458 KRVIACIGDGSFQVTAQEISTMIRCGQ--RSIIFLINNGGYTIEVEIHDGPYNVIKNWDYTGLVNAIHNGEGKCWTAKVR 535 (589)
Q Consensus 458 ~~vv~i~GDGsf~~~~~el~ta~~~~l--~v~ivv~nN~~~~~~~~~~~~~~~~~~~~d~~~la~a~G~~~~~~~~~~v~ 535 (589)
|-+|++.|-|+.+.. |..+.+.++ .+..||-|+..+ -.+.|+.+|+ +.+.++
T Consensus 14 ri~vl~SG~gsnl~a---ll~~~~~~~~~eI~~Vis~~~a~------------------~~~~A~~~gI-----p~~~~~ 67 (215)
T 3da8_A 14 RLVVLASGTGSLLRS---LLDAAVGDYPARVVAVGVDRECR------------------AAEIAAEASV-----PVFTVR 67 (215)
T ss_dssp EEEEEESSCCHHHHH---HHHHSSTTCSEEEEEEEESSCCH------------------HHHHHHHTTC-----CEEECC
T ss_pred EEEEEEeCChHHHHH---HHHHHhccCCCeEEEEEeCCchH------------------HHHHHHHcCC-----CEEEeC
Confidence 345666798886544 433332234 454444444321 2467889998 676663
Q ss_pred -----CHHHHHHHHHHhhhcCCCCeEEEEEEcCCCCChHHHHHH
Q 007800 536 -----SEDELTEAMKTATGEQKDSLCFIEVFVHKDDTSKELLEW 574 (589)
Q Consensus 536 -----~~~~l~~al~~a~~~~~~gp~viev~~~~~~~~~~~~~~ 574 (589)
+.+++++.+.+.+. .-+|=+|-+.--..-.++.+.+.
T Consensus 68 ~~~~~~r~~~d~~~~~~l~--~~~~Dlivlagy~~iL~~~~l~~ 109 (215)
T 3da8_A 68 LADHPSRDAWDVAITAATA--AHEPDLVVSAGFMRILGPQFLSR 109 (215)
T ss_dssp GGGSSSHHHHHHHHHHHHH--TTCCSEEEEEECCSCCCHHHHHH
T ss_pred cccccchhhhhHHHHHHHH--hhCCCEEEEcCchhhCCHHHHhh
Confidence 34566666666665 45565655544444455544443
No 170
>3sho_A Transcriptional regulator, RPIR family; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 1.80A {Sphaerobacter thermophilus}
Probab=24.55 E-value=3.1e+02 Score=23.61 Aligned_cols=88 Identities=11% Similarity=0.019 Sum_probs=50.5
Q ss_pred HHHHHHHHHHcCCCEEEecCCcchHHHHHh----hhcCCCCeEEecC---chhHHHHhhhhhhhccCceEEEEeCCcc-h
Q 007800 30 GRHLARRLVEIGAKDVFSVPGDFNLTLLDH----LIAEPELNLVGCC---NELNAGYAADGYARSRGVGACVVTFTVG-G 101 (589)
Q Consensus 30 a~~i~~~L~~~GV~~vfg~pG~~~~~l~~a----l~~~~~i~~v~~~---hE~~A~~~A~gyar~tg~~v~~~t~GpG-~ 101 (589)
-+.+++.|.+..-=++||+-++ ..+-.. |.+ -++.++... ++.. .-....+..-++++-|-+| .
T Consensus 29 l~~~~~~i~~a~~I~i~G~G~S--~~~a~~~~~~l~~-~g~~~~~~~~~~~~~~-----~~~~~~~~~d~~i~iS~sG~t 100 (187)
T 3sho_A 29 IEAAVEAICRADHVIVVGMGFS--AAVAVFLGHGLNS-LGIRTTVLTEGGSTLT-----ITLANLRPTDLMIGVSVWRYL 100 (187)
T ss_dssp HHHHHHHHHHCSEEEEECCGGG--HHHHHHHHHHHHH-TTCCEEEECCCTHHHH-----HHHHTCCTTEEEEEECCSSCC
T ss_pred HHHHHHHHHhCCEEEEEecCch--HHHHHHHHHHHHh-cCCCEEEecCCchhHH-----HHHhcCCCCCEEEEEeCCCCC
Confidence 3567778888765555565333 333332 222 355554443 2221 1122334444555555556 4
Q ss_pred HHHHHHHHHhhhcCCcEEEEeCCC
Q 007800 102 LSVLNAIAGAYSENLPVICIVGGP 125 (589)
Q Consensus 102 ~n~~~~l~~A~~~~~PllvI~g~~ 125 (589)
.+.+..+-.|...+.|+|.||+..
T Consensus 101 ~~~~~~~~~ak~~g~~vi~IT~~~ 124 (187)
T 3sho_A 101 RDTVAALAGAAERGVPTMALTDSS 124 (187)
T ss_dssp HHHHHHHHHHHHTTCCEEEEESCT
T ss_pred HHHHHHHHHHHHCCCCEEEEeCCC
Confidence 567788888999999999999864
No 171
>4b4k_A N5-carboxyaminoimidazole ribonucleotide mutase; isomerase; 2.50A {Bacillus anthracis}
Probab=24.40 E-value=1.4e+02 Score=26.50 Aligned_cols=35 Identities=14% Similarity=-0.038 Sum_probs=28.9
Q ss_pred cccCCCcccHHHHHHHHHHHcCCCEEEecCCcchH
Q 007800 20 VRGGASVGTLGRHLARRLVEIGAKDVFSVPGDFNL 54 (589)
Q Consensus 20 ~~~~~~~~~~a~~i~~~L~~~GV~~vfg~pG~~~~ 54 (589)
.-|..+.....+-.++.|++.||.|-.++-+.+=+
T Consensus 28 imGS~SD~~v~~~a~~~L~~~gI~~e~~V~SAHRt 62 (181)
T 4b4k_A 28 IMGSTSDWETMKYACDILDELNIPYEKKVVSAHRT 62 (181)
T ss_dssp EESSGGGHHHHHHHHHHHHHTTCCEEEEECCTTTS
T ss_pred EECCHhHHHHHHHHHHHHHHcCCCeeEEEEccccC
Confidence 44556678999999999999999999999886533
No 172
>4fx5_A VON willebrand factor type A; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, blood clotting; HET: MSE; 1.73A {Catenulispora acidiphila}
Probab=24.25 E-value=2.5e+02 Score=28.95 Aligned_cols=93 Identities=13% Similarity=0.109 Sum_probs=55.4
Q ss_pred cchhhHHHHHHHHhhhcCC-CcEEEEEcchhhcc-cHHHHHHHHH-hCCCeEEEEEeCCchhhhhhhcCCCCCCCCCCCh
Q 007800 439 GSIGWSVGATLGYAQAAKD-KRVIACIGDGSFQV-TAQEISTMIR-CGQRSIIFLINNGGYTIEVEIHDGPYNVIKNWDY 515 (589)
Q Consensus 439 g~mG~~l~~aiGaala~~~-~~vv~i~GDGsf~~-~~~el~ta~~-~~l~v~ivv~nN~~~~~~~~~~~~~~~~~~~~d~ 515 (589)
..|+.++-.|+-.-...+. .+.|.++-||--.. ....+..+.+ .+.++.+..+ ++|.. ...--+
T Consensus 160 T~l~~aL~~A~~~l~~~~~~~~~IILLTDG~~~~~~~~~l~~~~~a~~~~i~i~ti---GiG~~----------~d~~~L 226 (464)
T 4fx5_A 160 TAMGRWLAQAGRIFDTAPSAIKHAILLTDGKDESETPADLARAIQSSIGNFTADCR---GIGED----------WEPKEL 226 (464)
T ss_dssp CCHHHHHHHHHHHHTTCTTSEEEEEEEESSCCTTSCHHHHHHHHHHHTTTCEEEEE---EESSS----------SCHHHH
T ss_pred CcHHHHHHHHHHHHhcCCCCCCEEEEEcCCCCCCCChHHHHHHHHHhcCCCeEEEE---EeCCc----------cCHHHH
Confidence 3455666555543222232 36888888997653 3444544433 3344444443 22210 011136
Q ss_pred HHHHHHccCCCCCccEEEeCCHHHHHHHHHHhhh
Q 007800 516 TGLVNAIHNGEGKCWTAKVRSEDELTEAMKTATG 549 (589)
Q Consensus 516 ~~la~a~G~~~~~~~~~~v~~~~~l~~al~~a~~ 549 (589)
.++|+.-|+ .++.+.+.++|.+++.+.+.
T Consensus 227 ~~IA~~tgG-----~~~~v~d~~~L~~~f~~i~~ 255 (464)
T 4fx5_A 227 RKIADALLG-----TVGIIRDPATLAEDFREMTA 255 (464)
T ss_dssp HHHHHHTTC-----CEEEESSGGGHHHHHHHHHH
T ss_pred HHHHHhCCC-----EEEEcCCHHHHHHHHHHHHH
Confidence 788998888 89999999999999888875
No 173
>3cpq_A 50S ribosomal protein L30E; RNA-protein, elongation factor, ribonucleoprotein, structural genomics, NPPSFA; 1.90A {Methanocaldococcus jannaschii}
Probab=24.13 E-value=1.6e+02 Score=23.55 Aligned_cols=43 Identities=16% Similarity=0.176 Sum_probs=32.0
Q ss_pred HHHHHHHHhcCCCEEEeCcccchhhHHHHHHHHHHHhCCceEEc
Q 007800 226 EATADFLNKAVKPVLVGGPNIRVAKAQKAFIELADATGYPIAIM 269 (589)
Q Consensus 226 ~~~~~~L~~a~rpviv~G~g~~~~~~~~~l~~lae~~~~Pv~tt 269 (589)
+++...|.+.+--++++-..+ ..+....+..+|+..++|++.-
T Consensus 27 ~~v~kai~~gka~lViiA~D~-~~~~~~~l~~~c~~~~Vp~~~~ 69 (110)
T 3cpq_A 27 KRTIKFVKHGEGKLVVLAGNI-PKDLEEDVKYYAKLSNIPVYQH 69 (110)
T ss_dssp HHHHHHHHTTCCSEEEECTTC-BHHHHHHHHHHHHHTTCCEEEC
T ss_pred HHHHHHHHcCCceEEEEeCCC-CHHHHHHHHHHHHHcCCCEEEE
Confidence 455666777666666666666 4467889999999999998763
No 174
>2kyr_A Fructose-like phosphotransferase enzyme IIB compo; ALP protein, structural genomics, PSI-2; NMR {Escherichia coli}
Probab=24.02 E-value=66 Score=26.22 Aligned_cols=90 Identities=13% Similarity=0.160 Sum_probs=52.9
Q ss_pred Ccccchh-hHHHHHHHHHHHhCCceEEccCCccCCCCCCCCceeeecCCCCCHHHHHHhhhcCEEEEeCCCcC-Cccccc
Q 007800 243 GPNIRVA-KAQKAFIELADATGYPIAIMPSGKGLVPEHHPHFIGTYWGAVSSSFCGEIVESADAYVFVGPIFN-DYSSVG 320 (589)
Q Consensus 243 G~g~~~~-~~~~~l~~lae~~~~Pv~tt~~~~g~~~~~~pl~~G~~~g~~~~~~~~~~l~~aD~vl~lG~~~~-~~~~~~ 320 (589)
..|.... =+.+.|++-|+++|+.+-....|. .|.- ..+ ..+-+.+||+||+.+..-. +...
T Consensus 15 ptGiAHTyMAAeaL~~aA~~~G~~ikVEtqGs----------~G~~-n~L----t~~~I~~Ad~VIiA~d~~v~~~~R-- 77 (111)
T 2kyr_A 15 PMGLAHTFMAAQALEEAAVEAGYEVKIETQGA----------DGIQ-NRL----TAQDIAEATIIIHSVAVTPEDNER-- 77 (111)
T ss_dssp SSCHHHHHHHHHHHHHHHHHTSSEEEEEEEET----------TEEE-SCC----CHHHHHHCSEEEEEESSCCTTGGG--
T ss_pred CCcHHHHHHHHHHHHHHHHHCCCeEEEEecCC----------CCcC-CCC----CHHHHHhCCEEEEEeCCCcCchhh--
Confidence 3444433 368899999999999988766553 1221 111 2356789999999985432 2221
Q ss_pred ccccCCCCceEEEcCCceeecCCCccccccHHHHHHHHHHHh
Q 007800 321 YSLLIKKEKAIIVQPHRVTVGNGPSLGWVFMADFLSALAKKL 362 (589)
Q Consensus 321 ~~~~~~~~~~i~id~d~~~~~~~~~~~~~~~~~~l~~L~~~l 362 (589)
+.+.+++++++...- -+++.+|+.....+
T Consensus 78 ----F~GK~v~~~~v~~ai---------~~p~~~l~~a~~~~ 106 (111)
T 2kyr_A 78 ----FESRDVYEITLQDAI---------KNAAGIIKEIEEMI 106 (111)
T ss_dssp ----GTTSCEEEEETTHHH---------HSHHHHHHHHHHHH
T ss_pred ----cCCCeEEEeCHHHHH---------HCHHHHHHHHHHHH
Confidence 134467777665431 13566666554433
No 175
>2csu_A 457AA long hypothetical protein; structural genomics, PH0766, riken ST genomics/proteomics initiative, RSGI, NPPSFA; 2.20A {Pyrococcus horikoshii} SCOP: c.2.1.8 c.23.4.1 c.23.4.1
Probab=23.98 E-value=2e+02 Score=29.61 Aligned_cols=74 Identities=18% Similarity=0.201 Sum_probs=41.9
Q ss_pred HHHHHHHHHHHcCCCEEEecCCcc----------hHHHHHhhhcCCCCeEEe-------cCch-hHHHHhhhhhhhccCc
Q 007800 29 LGRHLARRLVEIGAKDVFSVPGDF----------NLTLLDHLIAEPELNLVG-------CCNE-LNAGYAADGYARSRGV 90 (589)
Q Consensus 29 ~a~~i~~~L~~~GV~~vfg~pG~~----------~~~l~~al~~~~~i~~v~-------~~hE-~~A~~~A~gyar~tg~ 90 (589)
...-+++.+.+.||+.+..++.+. ...+.+...+ .+++++. ..++ ..++|+. .+.+ |.
T Consensus 76 ~~~~~v~e~~~~Gi~~vv~~s~G~~e~g~~g~~~~~~l~~~a~~-~g~~viGPnc~Gv~~~~~~~~~~~~~-~~~~--G~ 151 (457)
T 2csu_A 76 FVKDTLIQCGEKGVKGVVIITAGFGETGEEGKREEKELVEIAHK-YGMRIIGPNCVGIMNTHVDLNATFIT-VAKK--GN 151 (457)
T ss_dssp HHHHHHHHHHHHTCCEEEECCCSSTTSCHHHHHHHHHHHHHHHH-HTCEEECSSCCEEEEGGGTEEEESSC-CCEE--CS
T ss_pred HHHHHHHHHHHcCCCEEEEecCCCCccccccHHHHHHHHHHHHH-cCCEEEcCCcceEEccCCCceeeecC-CCCC--CC
Confidence 345556777788999988777442 3445555543 3565552 2233 3455543 2333 77
Q ss_pred eEEEEeCCcchHHHHH
Q 007800 91 GACVVTFTVGGLSVLN 106 (589)
Q Consensus 91 ~v~~~t~GpG~~n~~~ 106 (589)
..++..||.....++.
T Consensus 152 v~~vsqSG~~~~~~~~ 167 (457)
T 2csu_A 152 VAFISQSGALGAGIVY 167 (457)
T ss_dssp EEEEESCHHHHHHHHH
T ss_pred EEEEeCCHHHHHHHHH
Confidence 6666677755444443
No 176
>2r4q_A Phosphotransferase system (PTS) fructose-specific iiabc component; fructose specific IIB subunit, PF structural genomics, PSI-2; HET: MSE; 1.60A {Bacillus subtilis subsp} SCOP: c.44.2.2
Probab=23.87 E-value=61 Score=26.17 Aligned_cols=66 Identities=20% Similarity=0.222 Sum_probs=41.6
Q ss_pred hHHHHHHHHHHHhCCceEEccCCccCCCCCCCCceeeecCCCCCHHHHHHhhhcCEEEEeCCCcCCcccccccccCCCCc
Q 007800 250 KAQKAFIELADATGYPIAIMPSGKGLVPEHHPHFIGTYWGAVSSSFCGEIVESADAYVFVGPIFNDYSSVGYSLLIKKEK 329 (589)
Q Consensus 250 ~~~~~l~~lae~~~~Pv~tt~~~~g~~~~~~pl~~G~~~g~~~~~~~~~~l~~aD~vl~lG~~~~~~~~~~~~~~~~~~~ 329 (589)
=+.+.|++-|+++|+.+-...+|. .|.- ..+ ..+-+.+||+||+.+....+... +.+.+
T Consensus 20 mAaeaL~~aA~~~G~~ikVEtqGs----------~G~~-n~L----t~~~I~~Ad~VIiA~d~~v~~~R------F~GK~ 78 (106)
T 2r4q_A 20 MAADALKEKAKELGVEIKVETNGS----------SGIK-HKL----TAQEIEDAPAIIVAADKQVEMER------FKGKR 78 (106)
T ss_dssp HHHHHHHHHHHHHTCCEEEEEEET----------TEEE-SCC----CHHHHHHCSCEEEEESSCCCCGG------GTTSB
T ss_pred HHHHHHHHHHHHCCCeEEEEecCC----------CCcc-CCC----CHHHHHhCCEEEEEeCCccCHhH------cCCCe
Confidence 368899999999999988766653 1221 111 23467899999999864433221 22446
Q ss_pred eEEEcCC
Q 007800 330 AIIVQPH 336 (589)
Q Consensus 330 ~i~id~d 336 (589)
++++++.
T Consensus 79 v~~~~v~ 85 (106)
T 2r4q_A 79 VLQVPVT 85 (106)
T ss_dssp EEEECHH
T ss_pred EEEeCHH
Confidence 6666543
No 177
>1m3s_A Hypothetical protein YCKF; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.95A {Bacillus subtilis} SCOP: c.80.1.3 PDB: 1viv_A
Probab=23.53 E-value=3.4e+02 Score=23.35 Aligned_cols=46 Identities=15% Similarity=0.209 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHhcCCCEEEeCcccchhhHHHHHHHHHHHhCCceEEc
Q 007800 222 EAAVEATADFLNKAVKPVLVGGPNIRVAKAQKAFIELADATGYPIAIM 269 (589)
Q Consensus 222 ~~~i~~~~~~L~~a~rpviv~G~g~~~~~~~~~l~~lae~~~~Pv~tt 269 (589)
.+.+++++++|.+++ -++++|.|....-+. .+.....++|.++..-
T Consensus 24 ~~~i~~~~~~i~~a~-~I~i~G~G~S~~~A~-~~~~~l~~~g~~~~~~ 69 (186)
T 1m3s_A 24 NEEADQLADHILSSH-QIFTAGAGRSGLMAK-SFAMRLMHMGFNAHIV 69 (186)
T ss_dssp HHHHHHHHHHHHHCS-CEEEECSHHHHHHHH-HHHHHHHHTTCCEEET
T ss_pred HHHHHHHHHHHHcCC-eEEEEecCHHHHHHH-HHHHHHHhcCCeEEEe
Confidence 457899999999886 577788887654333 3444445788887763
No 178
>3i9v_3 NADH-quinone oxidoreductase subunit 3; electron transport, respiratory chain, cell flavoprotein, FMN, iron, iron-sulfur, membrane; HET: FMN; 3.10A {Thermus thermophilus} PDB: 2ybb_3* 2fug_3* 3iam_3* 3ias_3* 3m9s_3*
Probab=23.45 E-value=2.7e+02 Score=30.85 Aligned_cols=93 Identities=16% Similarity=0.159 Sum_probs=53.6
Q ss_pred HHHHHHHHHHHhcCCCEEEeCcccchh-hHHHHHHHHHHHhCCceEEccC-C-------ccCCCCCC-CCc----eeeec
Q 007800 223 AAVEATADFLNKAVKPVLVGGPNIRVA-KAQKAFIELADATGYPIAIMPS-G-------KGLVPEHH-PHF----IGTYW 288 (589)
Q Consensus 223 ~~i~~~~~~L~~a~rpviv~G~g~~~~-~~~~~l~~lae~~~~Pv~tt~~-~-------~g~~~~~~-pl~----~G~~~ 288 (589)
+.++++++.|.++++++|+.|.+.... .+......|+.+.|.-+..-.. + -|.+|... ..+ +..++
T Consensus 488 e~i~~~A~~la~a~~~~I~~G~g~~~~~~~~~~~~~l~g~~G~g~~~l~~~~N~~Ga~~~G~~p~~~g~~~~~~gikal~ 567 (783)
T 3i9v_3 488 EMVAKAKEAWEKAKNPVLILGAGVLQDTVAAERARLLAERKGAKVLAMTPAANARGLEAMGVLPGAKGASWDEPGALYAY 567 (783)
T ss_dssp HHHHHHHHHHHHCSSCEEEECSHHHHCHHHHHHHHHHHHHTTCCEEECCSSTTHHHHHHHTCSCCSSCCCTTSCCCSEEE
T ss_pred HHHHHHHHHHHhCCCcEEEECchhhhcHHHHHHHHHHhcccCCCeeeccCcchhhhhhhcCCCCCchhhhhhcCCCeEEE
Confidence 457788999999999999999987553 2333344478888866654221 1 12333211 000 11111
Q ss_pred CCCCCHHHHHHhhhcCEEEEeCCCcCCcc
Q 007800 289 GAVSSSFCGEIVESADAYVFVGPIFNDYS 317 (589)
Q Consensus 289 g~~~~~~~~~~l~~aD~vl~lG~~~~~~~ 317 (589)
-...++... +++.|++++++...+++.
T Consensus 568 v~g~np~~~--L~~~~fvVv~d~~~t~ta 594 (783)
T 3i9v_3 568 YGFVPPEEA--LKGKRFVVMHLSHLHPLA 594 (783)
T ss_dssp ESSCCCHHH--HTTCSEEEECCSSCCTTT
T ss_pred EeCCCHHHH--HhhCCEEEEEeCcCCchh
Confidence 112232222 788999999987766554
No 179
>1jeo_A MJ1247, hypothetical protein MJ1247; RUMP pathway, phosphosugar, 3-hexulose-6-phosphate isomerase structural genomics; HET: CME CIT; 2.00A {Methanocaldococcus jannaschii} SCOP: c.80.1.3
Probab=23.39 E-value=3.5e+02 Score=23.12 Aligned_cols=47 Identities=13% Similarity=0.109 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHHhcCCCEEEeCcccchhhHHHHHHHHHHHhCCceEEc
Q 007800 221 LEAAVEATADFLNKAVKPVLVGGPNIRVAKAQKAFIELADATGYPIAIM 269 (589)
Q Consensus 221 ~~~~i~~~~~~L~~a~rpviv~G~g~~~~~~~~~l~~lae~~~~Pv~tt 269 (589)
+.+.+++++++|.+++ .++++|.|.... ....+.....++|.++..-
T Consensus 26 ~~~~i~~~~~~i~~a~-~I~i~G~G~S~~-~A~~~~~~l~~~g~~~~~~ 72 (180)
T 1jeo_A 26 WKNKLDSLIDRIIKAK-KIFIFGVGRSGY-IGRCFAMRLMHLGFKSYFV 72 (180)
T ss_dssp HHHHHHHHHHHHHHCS-SEEEECCHHHHH-HHHHHHHHHHHTTCCEEET
T ss_pred CHHHHHHHHHHHHhCC-EEEEEeecHHHH-HHHHHHHHHHHcCCeEEEe
Confidence 4567899999999886 577888887654 3334444445688888764
No 180
>3rot_A ABC sugar transporter, periplasmic sugar binding; nysgrc, PSI-biology, structural genomics; 1.91A {Legionella pneumophila subsp}
Probab=23.13 E-value=4.5e+02 Score=24.31 Aligned_cols=149 Identities=9% Similarity=-0.078 Sum_probs=73.0
Q ss_pred cccHHHHHHHHHHHcC--CCEEEecCCcc--------hHHHHHhhhcCCCCeEEecC--chhHHHH-hhhhhhhccCc-e
Q 007800 26 VGTLGRHLARRLVEIG--AKDVFSVPGDF--------NLTLLDHLIAEPELNLVGCC--NELNAGY-AADGYARSRGV-G 91 (589)
Q Consensus 26 ~~~~a~~i~~~L~~~G--V~~vfg~pG~~--------~~~l~~al~~~~~i~~v~~~--hE~~A~~-~A~gyar~tg~-~ 91 (589)
...++..+++.|.+.| -++|..+-|.. ...+.+++.+. +++++... .....++ ++..+-+.... -
T Consensus 112 ~~~~g~~a~~~l~~~g~~~~~i~~i~g~~~~~~~~~R~~Gf~~~l~~~-g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 190 (297)
T 3rot_A 112 NLLAGKKLGEKALELTPSAKRALVLNPQPGHIGLEKRAYGIKTILQDK-GIFFEELDVGTDPNQVQSRVKSYFKIHPETN 190 (297)
T ss_dssp HHHHHHHHHHHHHHHCTTCCEEEEEESCTTCHHHHHHHHHHHHHHHHT-TCEEEEEECCSCHHHHHHHHHHHHHHCTTCC
T ss_pred hHHHHHHHHHHHHHhcCCCceEEEEeCCCCcHHHHHHHHHHHHHHHhc-CCeEEEeecCCChHHHHHHHHHHHHhCCCCC
Confidence 3567889999999999 78777665542 23456667654 67665432 2222222 22222222334 5
Q ss_pred EEEEeCCcchHHHHHHHHHhhh----cCCcEEEEeCCCCccccCCccceeeecCCCChHHHHHhhhcceeEEEEeCChhh
Q 007800 92 ACVVTFTVGGLSVLNAIAGAYS----ENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCFQAITCSQAVVNNLGD 167 (589)
Q Consensus 92 v~~~t~GpG~~n~~~~l~~A~~----~~~PllvI~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tk~~~~v~~~~~ 167 (589)
++++.+...+.-++.++.++-. ..+.+ ++-+... .....+.......+.. .++.+
T Consensus 191 ai~~~~d~~A~g~~~al~~~g~~vP~~dv~v--ig~D~~~------------------~~~~~i~~~~~lttv~-~~~~~ 249 (297)
T 3rot_A 191 IIFCLTSQALDPLGQMLLHPDRYDFNYQPQV--YSFDKTP------------------NTVSLIHKKLVNYVMD-QQPFL 249 (297)
T ss_dssp EEEESSHHHHHHHHHHHHSHHHHTCCCCCEE--EEECCCH------------------HHHHHHHTTSCCEEEC-CCHHH
T ss_pred EEEEcCCcchHHHHHHHHhcCCccCCCceEE--EEeCCCH------------------HHHHHHHcCCceEEEe-cChHH
Confidence 6666666555555666555443 23333 2322100 0011222222122222 23444
Q ss_pred H-HHHHHHHHHHhHhcCCcEEEEeCCCCCC
Q 007800 168 A-HELIDTAISTALKESKPVYISISCNLPG 196 (589)
Q Consensus 168 ~-~~~l~~A~~~a~~~~gPV~i~iP~dv~~ 196 (589)
+ ...++.+++.......|-++.+|.++..
T Consensus 250 ~g~~av~~l~~~i~g~~~~~~i~~~~~~~~ 279 (297)
T 3rot_A 250 MGYLSITQLVLMNRYQLNPVNINTAMAENL 279 (297)
T ss_dssp HHHHHHHHHHHHHHHCCCCCCEECCC----
T ss_pred HHHHHHHHHHHHHhCCCCCcccccCceEEe
Confidence 3 4445555555555567888999988865
No 181
>1tvm_A PTS system, galactitol-specific IIB component; phosphotransferase system (PTS), P-loop; NMR {Escherichia coli}
Probab=23.08 E-value=1.1e+02 Score=24.75 Aligned_cols=31 Identities=19% Similarity=0.351 Sum_probs=26.6
Q ss_pred CCCEEEeCcccchhh-HHHHHHHHHHHhCCce
Q 007800 236 VKPVLVGGPNIRVAK-AQKAFIELADATGYPI 266 (589)
Q Consensus 236 ~rpviv~G~g~~~~~-~~~~l~~lae~~~~Pv 266 (589)
+|.++++|.|...+. ....+++.++..|+.+
T Consensus 22 kkIlvvC~sG~gTS~ll~~kl~~~~~~~gi~~ 53 (113)
T 1tvm_A 22 RKIIVACGGAVATSTMAAEEIKELCQSHNIPV 53 (113)
T ss_dssp EEEEEESCSCSSHHHHHHHHHHHHHHHTTCCE
T ss_pred cEEEEECCCCHHHHHHHHHHHHHHHHHcCCeE
Confidence 567899999999887 5789999999999885
No 182
>2b99_A Riboflavin synthase; lumazine riboflavin, transferase; HET: RDL; 2.22A {Methanocaldococcus jannaschii} PDB: 2b98_A*
Probab=23.04 E-value=1.6e+02 Score=25.53 Aligned_cols=28 Identities=21% Similarity=0.214 Sum_probs=22.2
Q ss_pred HHHHHHHHHcCCC---EEEecCCcchHHHHH
Q 007800 31 RHLARRLVEIGAK---DVFSVPGDFNLTLLD 58 (589)
Q Consensus 31 ~~i~~~L~~~GV~---~vfg~pG~~~~~l~~ 58 (589)
+.-.+.|+++|++ .++-+||....|+.-
T Consensus 19 ~gA~~~L~~~G~~~~i~~~~VPGafEiP~aa 49 (156)
T 2b99_A 19 SIAIKKLKELSPNIKIIRKTVPGIKDLPVAC 49 (156)
T ss_dssp HHHHHHHHHHCTTCEEEEEEESSGGGHHHHH
T ss_pred HHHHHHHHHcCCCCeEEEEECCcHHHHHHHH
Confidence 5556889999985 338999999999873
No 183
>3sho_A Transcriptional regulator, RPIR family; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 1.80A {Sphaerobacter thermophilus}
Probab=22.88 E-value=1.4e+02 Score=26.09 Aligned_cols=45 Identities=20% Similarity=0.200 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHhcCCCEEEeCcccchhhHHHHHHHHHHHhCCceEE
Q 007800 222 EAAVEATADFLNKAVKPVLVGGPNIRVAKAQKAFIELADATGYPIAI 268 (589)
Q Consensus 222 ~~~i~~~~~~L~~a~rpviv~G~g~~~~~~~~~l~~lae~~~~Pv~t 268 (589)
.+.+++++++|.+++ -++++|.|.... ....+.....++|.++..
T Consensus 26 ~~~l~~~~~~i~~a~-~I~i~G~G~S~~-~a~~~~~~l~~~g~~~~~ 70 (187)
T 3sho_A 26 PEAIEAAVEAICRAD-HVIVVGMGFSAA-VAVFLGHGLNSLGIRTTV 70 (187)
T ss_dssp HHHHHHHHHHHHHCS-EEEEECCGGGHH-HHHHHHHHHHHTTCCEEE
T ss_pred HHHHHHHHHHHHhCC-EEEEEecCchHH-HHHHHHHHHHhcCCCEEE
Confidence 467899999999986 578888887654 344445444678888875
No 184
>1q16_A Respiratory nitrate reductase 1 alpha chain; membrane protein, electron-transfer, oxidoreductase; HET: FME MD1 HEM AGA 3PH; 1.90A {Escherichia coli} SCOP: b.52.2.2 c.81.1.1 PDB: 3ir7_A* 1y5i_A* 1siw_A* 1y4z_A* 1r27_A* 1y5l_A* 1y5n_A* 3ir6_A* 3ir5_A* 3egw_A*
Probab=22.85 E-value=69 Score=37.82 Aligned_cols=114 Identities=12% Similarity=-0.018 Sum_probs=55.1
Q ss_pred HHHHHHHHHHHHHhc------CCCEEEeCcccchhh-HHHHHHHHHHHhCCceEEccCCccCCCCCCCCceeeecCCCCC
Q 007800 221 LEAAVEATADFLNKA------VKPVLVGGPNIRVAK-AQKAFIELADATGYPIAIMPSGKGLVPEHHPHFIGTYWGAVSS 293 (589)
Q Consensus 221 ~~~~i~~~~~~L~~a------~rpviv~G~g~~~~~-~~~~l~~lae~~~~Pv~tt~~~~g~~~~~~pl~~G~~~g~~~~ 293 (589)
-+++++.+++.|++. ++ +...+++..... ......+|+..+|-+.+.........+..++..+|.. .....
T Consensus 163 WDEAld~IA~~l~~i~~~~Gp~s-I~~~~~~~~~~~~~y~~~~rf~~~lG~~~~~~~~~~c~~~~~~~~~~G~~-~~~~~ 240 (1247)
T 1q16_A 163 WQEVNELIAASNVYTIKNYGPDR-VAGFSPIPAMSMVSYASGARYLSLIGGTCLSFYDWYCDLPPASPQTWGEQ-TDVPE 240 (1247)
T ss_dssp HHHHHHHHHHHHHHHHHHTCGGG-EEEECCCGGGSHHHHHHHHHHHHHHTCEEECCTTTTTCSCTHHHHHHSCS-CCCCC
T ss_pred HHHHHHHHHHHHHHHHHHhCCce-EEEEeCCccchHHHHHHHHHHHHHhCCCccCCCCchhhhhhhHHHHhCCC-CCCCC
Confidence 355666666666542 22 433333322221 1222358888899877643321111111112122210 00010
Q ss_pred HHHHHHhhhcCEEEEeCCCcCCcccccccc----cCCCCceEEEcCCcee
Q 007800 294 SFCGEIVESADAYVFVGPIFNDYSSVGYSL----LIKKEKAIIVQPHRVT 339 (589)
Q Consensus 294 ~~~~~~l~~aD~vl~lG~~~~~~~~~~~~~----~~~~~~~i~id~d~~~ 339 (589)
. .-+.+||+||++|+......+..+.. ..++.|+|.||+....
T Consensus 241 --~-~D~~~ad~iv~wGsN~~~t~~~~~~~l~~ar~~G~KvVvIDPr~t~ 287 (1247)
T 1q16_A 241 --S-ADWYNSSYIIAWGSNVPQTRTPDAHFFTEVRYKGTKTVAVTPDYAE 287 (1247)
T ss_dssp --G-GGGGGCSEEEEESCCHHHHSGGGHHHHHHHGGGTCEEEEECSSCCH
T ss_pred --H-HHHhhCCEEEEECCCchhccHHHHHHHHHHHHCCCEEEEEeCCCCc
Confidence 1 12468999999998754332222211 1246799999997654
No 185
>2qtc_A Pyruvate dehydrogenase E1 component; thiamin diphosphate, glycolysis, MAG metal-binding, oxidoreductase, thiamine pyrophosphate; HET: TDK; 1.77A {Escherichia coli} SCOP: c.36.1.6 c.36.1.10 c.48.1.1 PDB: 2qta_A* 1l8a_A* 1rp7_A* 2g25_A* 2g28_A* 2g67_A 2iea_A* 3lpl_A* 3lq2_A* 3lq4_A*
Probab=22.82 E-value=4.2e+02 Score=29.88 Aligned_cols=172 Identities=14% Similarity=0.025 Sum_probs=88.9
Q ss_pred EecCchhHH-H---HhhhhhhhccC-c-eEEEEeCCcchHHHHHHHHHh-hhcCCcEEEEeCCCCccccCCccceeeecC
Q 007800 69 VGCCNELNA-G---YAADGYARSRG-V-GACVVTFTVGGLSVLNAIAGA-YSENLPVICIVGGPNSNDYGTNRILHHTIG 141 (589)
Q Consensus 69 v~~~hE~~A-~---~~A~gyar~tg-~-~v~~~t~GpG~~n~~~~l~~A-~~~~~PllvI~g~~~~~~~~~~~~~~~~~~ 141 (589)
-....|++| + .+|.|||...+ . .+++..+-=+..-+.--+..+ -+.+.++++. +.......+.+...|+..
T Consensus 566 d~GIaE~~a~~~~~g~a~GlA~~G~~~~P~~~~ys~F~~qRa~Dqi~~~~d~~~~~v~l~-~~~~~~~~g~dG~tHq~~- 643 (886)
T 2qtc_A 566 QEGINELGAGCSWLAAATSYSTNNLPMIPFYIYYSMFGFQRIGDLCWAAGDQQARGFLIG-GTSGRTTLNGEGLQHEDG- 643 (886)
T ss_dssp ECCSCHHHHHHHHHHHHTHHHHTSCCCEEEEEEEGGGSHHHHHHHHHHHHHTTCCCEEEE-ESCSTTTSTTTCTTTCCS-
T ss_pred eeccCchhhhhHHHHHHHHHHhcCCCceEEEEEehHHHHHHHHHHHHHHHHHhcCCEEEE-EecCcccCCCCCCccCCc-
Confidence 347899997 4 58999999873 4 665544332332233333332 3345565554 332222122222233211
Q ss_pred CCChHHHHHhhhccee-EEEEeCChhhHHHHHHHHHHHhHhcCCc----EEEEeCCCCCCCCCCCCCCCCCCccCCCCCC
Q 007800 142 LPDFTQELRCFQAITC-SQAVVNNLGDAHELIDTAISTALKESKP----VYISISCNLPGIPHPTFARDPVPFFLAPKVS 216 (589)
Q Consensus 142 ~~~~~~~~~~~~~~tk-~~~~v~~~~~~~~~l~~A~~~a~~~~gP----V~i~iP~dv~~~~~~~~~~~~~~~~~~~~~~ 216 (589)
....+++.+-. -.+.+.++.++..+++.|++.. .+| |+|.+|..-.. ... +. . +.
T Consensus 644 -----~~~a~lr~iPnl~V~~Pada~E~~~~l~~al~~~---~gP~~e~v~i~~~r~~~~----~~~-p~----~-~~-- 703 (886)
T 2qtc_A 644 -----HSHIQSLTIPNCISYDPAYAYEVAVIMHDGLERM---YGEKQENVYYYITTLNEN----YHM-PA----M-PE-- 703 (886)
T ss_dssp -----CHHHHHTTSTTEEEECCSSHHHHHHHHHHHHHHH---HSTTCCCCEEEEECCSCC----BCC-CC----C-CT--
T ss_pred -----chHHHHhhCCCCEEEecCCHHHHHHHHHHHHHhc---CCCCCceEEEEEeCCccc----cCC-CC----C-Cc--
Confidence 12446666543 3456677788888888777643 378 99999864311 100 00 0 00
Q ss_pred ChhhHHHHHHHHHHHHHhc---CCCEEEeCcccchhhHHHHHHHHHHHhCCc
Q 007800 217 NQLGLEAAVEATADFLNKA---VKPVLVGGPNIRVAKAQKAFIELADATGYP 265 (589)
Q Consensus 217 ~~~~~~~~i~~~~~~L~~a---~rpviv~G~g~~~~~~~~~l~~lae~~~~P 265 (589)
. ....+-.-+..++.. +.-|.|++.|.-...+.++...|++++|+.
T Consensus 704 --~-~~~~~~gga~vlr~g~~~~~dVtLia~G~~v~~al~AAe~L~~e~GI~ 752 (886)
T 2qtc_A 704 --G-AEEGIRKGIYKLETIEGSKGKVQLLGSGSILRHVREAAEILAKDYGVG 752 (886)
T ss_dssp --T-CHHHHHHTCEEEEEECCSSEEEEEEECGGGHHHHHHHHHHHHHHHCEE
T ss_pred --c-hhhhccCceEEEEecCCCCCCEEEEeCcHHHHHHHHHHHHHhhhhCCc
Confidence 0 001111111123332 145788888887767788888888876754
No 186
>2xhz_A KDSD, YRBH, arabinose 5-phosphate isomerase; lipopolysaccharide biogenesis; 2.60A {Escherichia coli}
Probab=22.80 E-value=92 Score=27.17 Aligned_cols=44 Identities=18% Similarity=0.098 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhcCCCEEEeCcccchhhHHHHHHHHHHHhCCceEE
Q 007800 224 AVEATADFLNKAVKPVLVGGPNIRVAKAQKAFIELADATGYPIAI 268 (589)
Q Consensus 224 ~i~~~~~~L~~a~rpviv~G~g~~~~~~~~~l~~lae~~~~Pv~t 268 (589)
.+++++++|.++++.++++|.|....-+.....+|.. +|.++..
T Consensus 37 ~i~~~~~~i~~a~~~I~i~G~G~S~~~a~~~~~~l~~-~g~~~~~ 80 (183)
T 2xhz_A 37 NFTLACEKMFWCKGKVVVMGMGASGHIGRKMAATFAS-TGTPSFF 80 (183)
T ss_dssp HHHHHHHHHHTCSSCEEEEECHHHHHHHHHHHHHHHT-TTCCEEE
T ss_pred HHHHHHHHHHhCCCeEEEEeecHHHHHHHHHHHHHHh-cCceEEE
No 187
>2lbw_A H/ACA ribonucleoprotein complex subunit 2; L7AE, snoRNP, scaRNP, RNA binding protein; NMR {Saccharomyces cerevisiae} PDB: 2lbx_A
Probab=22.75 E-value=2e+02 Score=23.50 Aligned_cols=43 Identities=19% Similarity=0.167 Sum_probs=32.6
Q ss_pred HHHHHHHHhcCCCEEEeCcccchhhHHHHHHHHHHHhCCceEE
Q 007800 226 EATADFLNKAVKPVLVGGPNIRVAKAQKAFIELADATGYPIAI 268 (589)
Q Consensus 226 ~~~~~~L~~a~rpviv~G~g~~~~~~~~~l~~lae~~~~Pv~t 268 (589)
.++...|.+.+--++++-..+....-...+..+|+..++|++.
T Consensus 26 ~~v~kai~~gkakLViiA~D~~~~~~~~~l~~lc~~~~VP~~~ 68 (121)
T 2lbw_A 26 KEVVKALRKGEKGLVVIAGDIWPADVISHIPVLCEDHSVPYIF 68 (121)
T ss_dssp HHHHHHHHHSCCCEEEECTTCSCTTHHHHHHHHHHHTCCCEEE
T ss_pred HHHHHHHHcCCceEEEEeCCCCHHHHHHHHHHHHHhcCCcEEE
Confidence 4556667777777777776666534578899999999999986
No 188
>2ql9_A Caspase-7; cysteine protease, apoptosis, thiol protease, zymogen, hydro hydrolase inhibitor complex; HET: CIT; 2.14A {Homo sapiens} PDB: 2ql7_A* 2ql5_A* 2qlb_A* 2qlf_A 2qlj_A* 3edr_A 3ibc_A 3ibf_A 1i51_A
Probab=22.68 E-value=79 Score=28.00 Aligned_cols=73 Identities=12% Similarity=0.111 Sum_probs=39.8
Q ss_pred eEEEEEeCCchhhhhhhcCCCCCCCCCCChHHHHHHccCCCCCccEEEeC--CHHHHHHHHHHhhhcC-CCCeEEEEEEc
Q 007800 486 SIIFLINNGGYTIEVEIHDGPYNVIKNWDYTGLVNAIHNGEGKCWTAKVR--SEDELTEAMKTATGEQ-KDSLCFIEVFV 562 (589)
Q Consensus 486 v~ivv~nN~~~~~~~~~~~~~~~~~~~~d~~~la~a~G~~~~~~~~~~v~--~~~~l~~al~~a~~~~-~~gp~viev~~ 562 (589)
=+.+|+||..|.-...+..+..++.+.-.+.++.+.+|+ ....-. +.+++.+.|+++.... ...-.+|-|..
T Consensus 45 G~aLIInn~~F~~~~~l~~R~Gt~~D~~~L~~~F~~LgF-----~V~v~~dlt~~em~~~l~~~s~~dh~~~dc~vvvil 119 (173)
T 2ql9_A 45 GKCIIINNKNFDKVTGMGVRNGTDKDAEALFKCFRSLGF-----DVIVYNDCSCAKMQDLLKKASEEDHTNAACFACILL 119 (173)
T ss_dssp EEEEEEECCCCCGGGCCCCCTTHHHHHHHHHHHHHHHTE-----EEEEEESCCHHHHHHHHHHHHTSCCTTEEEEEEEEE
T ss_pred eEEEEEeccccCCCCCCCCCCCcHHHHHHHHHHHHHCCC-----EEEEEeCCCHHHHHHHHHHHHHhhccCCCeEEEeec
Confidence 367888999775311111222222222356677778887 433332 7889999999875421 22334444444
Q ss_pred C
Q 007800 563 H 563 (589)
Q Consensus 563 ~ 563 (589)
.
T Consensus 120 S 120 (173)
T 2ql9_A 120 S 120 (173)
T ss_dssp S
T ss_pred C
Confidence 3
No 189
>3kuu_A Phosphoribosylaminoimidazole carboxylase catalyti PURE; 3-layer (ABA) sandwich, rossmann fold, csgid, lyase, structu genomics; 1.41A {Yersinia pestis} SCOP: c.23.8.1 PDB: 1d7a_A* 1qcz_A 2ate_A* 2nsl_A* 2nsh_A* 2nsj_A*
Probab=22.56 E-value=1.6e+02 Score=25.97 Aligned_cols=35 Identities=20% Similarity=0.017 Sum_probs=29.7
Q ss_pred cccccCCCcccHHHHHHHHHHHcCCCEEEecCCcc
Q 007800 18 APVRGGASVGTLGRHLARRLVEIGAKDVFSVPGDF 52 (589)
Q Consensus 18 ~~~~~~~~~~~~a~~i~~~L~~~GV~~vfg~pG~~ 52 (589)
.=..|+.+.+..++-.++.|++.||.|=.++-+-+
T Consensus 16 ~IimGS~SD~~v~~~a~~~L~~~Gi~~ev~V~SaH 50 (174)
T 3kuu_A 16 AIVMGSKSDWATMQFAADVLTTLNVPFHVEVVSAH 50 (174)
T ss_dssp EEEESSGGGHHHHHHHHHHHHHTTCCEEEEECCTT
T ss_pred EEEECcHHHHHHHHHHHHHHHHcCCCEEEEEEccc
Confidence 44556677799999999999999999999999864
No 190
>4ds3_A Phosphoribosylglycinamide formyltransferase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.85A {Brucella melitensis BV}
Probab=22.54 E-value=56 Score=29.93 Aligned_cols=68 Identities=16% Similarity=0.136 Sum_probs=40.0
Q ss_pred CCcEEEEEcchhhcccHHHHHHHHHh-C--CCeEEEEEeCCchhhhhhhcCCCCCCCCCCChHHHHHHccCCCCCccEEE
Q 007800 457 DKRVIACIGDGSFQVTAQEISTMIRC-G--QRSIIFLINNGGYTIEVEIHDGPYNVIKNWDYTGLVNAIHNGEGKCWTAK 533 (589)
Q Consensus 457 ~~~vv~i~GDGsf~~~~~el~ta~~~-~--l~v~ivv~nN~~~~~~~~~~~~~~~~~~~~d~~~la~a~G~~~~~~~~~~ 533 (589)
.|-+|++.|.|+++.. |..+.+. + ..+..||-|+..- .-.+.|+.+|+ +.+.
T Consensus 8 ~ri~vl~SG~gsnl~a---ll~~~~~~~l~~~I~~Visn~~~a-----------------~~l~~A~~~gI-----p~~~ 62 (209)
T 4ds3_A 8 NRVVIFISGGGSNMEA---LIRAAQAPGFPAEIVAVFSDKAEA-----------------GGLAKAEAAGI-----ATQV 62 (209)
T ss_dssp EEEEEEESSCCHHHHH---HHHHHTSTTCSEEEEEEEESCTTC-----------------THHHHHHHTTC-----CEEE
T ss_pred ccEEEEEECCcHHHHH---HHHHHHcCCCCcEEEEEEECCccc-----------------HHHHHHHHcCC-----CEEE
Confidence 3567889999998644 4444443 3 3556666654311 12367889998 6666
Q ss_pred eC-----CHHHHHHHHHHhhh
Q 007800 534 VR-----SEDELTEAMKTATG 549 (589)
Q Consensus 534 v~-----~~~~l~~al~~a~~ 549 (589)
++ +.+++++.+.+.+.
T Consensus 63 ~~~~~~~~r~~~d~~~~~~l~ 83 (209)
T 4ds3_A 63 FKRKDFASKEAHEDAILAALD 83 (209)
T ss_dssp CCGGGSSSHHHHHHHHHHHHH
T ss_pred eCccccCCHHHHHHHHHHHHH
Confidence 54 45555555555554
No 191
>1rrm_A Lactaldehyde reductase; structural genomics, dehydrogenase, PSI, protein structure initiative; HET: APR; 1.60A {Escherichia coli} SCOP: e.22.1.2 PDB: 2bi4_A* 2bl4_A*
Probab=22.36 E-value=70 Score=32.21 Aligned_cols=33 Identities=18% Similarity=0.182 Sum_probs=25.2
Q ss_pred cCCCEEEeCcccchhhHHHHHHHHHHHhCCceE
Q 007800 235 AVKPVLVGGPNIRVAKAQKAFIELADATGYPIA 267 (589)
Q Consensus 235 a~rpviv~G~g~~~~~~~~~l~~lae~~~~Pv~ 267 (589)
.+|++|+.+......+..+.+.+..++.|+.+.
T Consensus 31 ~~~~livtd~~~~~~g~~~~v~~~L~~~g~~~~ 63 (386)
T 1rrm_A 31 YQKALIVTDKTLVQCGVVAKVTDKMDAAGLAWA 63 (386)
T ss_dssp CCEEEEECBHHHHHTTHHHHHHHHHHHTTCEEE
T ss_pred CCEEEEEECcchhhchHHHHHHHHHHHcCCeEE
Confidence 578888888877665677888887788887764
No 192
>2xt6_A 2-oxoglutarate decarboxylase; lyase, KDH, KGD; HET: TPP; 2.74A {Mycobacterium smegmatis}
Probab=22.25 E-value=85 Score=36.58 Aligned_cols=97 Identities=14% Similarity=0.044 Sum_probs=57.7
Q ss_pred eEEEEeCCcchH----HHHHHHHHhhhcCCc---EEEEeCCCCccccCCccceeeecCCCChHHHHHhhhcceeEEEEeC
Q 007800 91 GACVVTFTVGGL----SVLNAIAGAYSENLP---VICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCFQAITCSQAVVN 163 (589)
Q Consensus 91 ~v~~~t~GpG~~----n~~~~l~~A~~~~~P---llvI~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tk~~~~v~ 163 (589)
.++++..|=|++ ...=++.-|..-+.| +|+|.-+.... ..+... +....... .+.++.+--...++.
T Consensus 523 ~~~v~~~GDGa~~~eG~~~Ealn~A~~~~lp~g~vi~iv~NN~~g-ist~~~--~~~s~~~~---~~~a~a~G~p~~~Vd 596 (1113)
T 2xt6_A 523 VVPLMLHGDAAFAGQGVVAETLNLALLRGYRTGGTIHIVVNNQIG-FTTAPT--DSRSSEYC---TDVAKMIGAPIFHVN 596 (1113)
T ss_dssp EEEEEEEEHHHHHHCTHHHHHHTTTTCTTTCCSCCEEEEEECSCB-TTBCHH--HHCSSSST---TGGGGGGTCCEEEEE
T ss_pred cEEEEEECCcccccccHHHHHHHHHhhcCCCCCCeEEEEEeCCcc-cccCcc--ccccccCH---HHHHHhcCCcEEEEc
Confidence 677777888873 333444456667888 88887653221 111100 00000111 234444433344555
Q ss_pred --ChhhHHHHHHHHHHHhHhcCCcEEEEeCCC
Q 007800 164 --NLGDAHELIDTAISTALKESKPVYISISCN 193 (589)
Q Consensus 164 --~~~~~~~~l~~A~~~a~~~~gPV~i~iP~d 193 (589)
+++.+...+++|++.+....+|+.|++-.-
T Consensus 597 G~D~~av~~a~~~A~~~~r~~~~PvlIe~~ty 628 (1113)
T 2xt6_A 597 GDDPEACAWVARLAVDFRQAFKKDVVIDMLCY 628 (1113)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHCCCEEEEEECC
T ss_pred CCCHHHHHHHHHHHHHHHHhcCCCEEEEEEeE
Confidence 888888999999988888889999998543
No 193
>4gnr_A ABC transporter substrate-binding protein-branche amino acid transport; amino acid-binding protein, surface-exposed protein; HET: MLY; 1.00A {Streptococcus pneumoniae}
Probab=22.11 E-value=1.8e+02 Score=28.14 Aligned_cols=57 Identities=18% Similarity=0.212 Sum_probs=37.0
Q ss_pred HHHHHHHHHhcCCCEEEeCcccchhhHHHHHHHHHHHhCCceEEccCCccCCCCCCCCce
Q 007800 225 VEATADFLNKAVKPVLVGGPNIRVAKAQKAFIELADATGYPIAIMPSGKGLVPEHHPHFI 284 (589)
Q Consensus 225 i~~~~~~L~~a~rpviv~G~g~~~~~~~~~l~~lae~~~~Pv~tt~~~~g~~~~~~pl~~ 284 (589)
++.+.+++ ...+.++++|.... .....+..++++.++|++........+....++++
T Consensus 64 ~~~a~~li-~~~~v~~i~g~~~s--~~~~a~~~~~~~~~vp~i~~~~~~~~l~~~~~~~f 120 (353)
T 4gnr_A 64 ASVTTNLV-TQSKVSAVVGPATS--GATAAAVANATKAGVPLISPSATQDGLTKGQDYLF 120 (353)
T ss_dssp HHHHHHHH-HTSCCSEEECCCSH--HHHHHHHHHHHHTTCCEEESSCCCTTTTTTCTTEE
T ss_pred HHHHHHHH-hhCCceEEeccccC--cccceehhhhhccCcceEeecccccccccCCcccc
Confidence 34444444 45566677776543 36677889999999999987665555555555443
No 194
>2pju_A Propionate catabolism operon regulatory protein; structural genomics, PRPR, transcriptional regulation, PSI- 2, protein structure initiative; 2.10A {Escherichia coli} SCOP: c.92.3.1
Probab=21.97 E-value=1.7e+02 Score=26.94 Aligned_cols=141 Identities=15% Similarity=0.024 Sum_probs=78.9
Q ss_pred HHHHHHHHHhhCCC--CCEEEecCCccccccccccccCCCeeEeccCccchhhHHHHHHHHhhhcCCCcEEEEEcchhhc
Q 007800 393 VNVLFKHIQDMLSG--DTAVIAETGDSWFNCQKLRLPENCGYEFQMQYGSIGWSVGATLGYAQAAKDKRVIACIGDGSFQ 470 (589)
Q Consensus 393 ~~~~~~~L~~~l~~--~~iiv~d~G~~~~~~~~~~~~~~~~~~~~~~~g~mG~~l~~aiGaala~~~~~vv~i~GDGsf~ 470 (589)
....+...++.+.. -++|++-.|+..+-...+.. + ++.- ..-|+-+=-|+--+. ....-|+++|=+...
T Consensus 48 le~av~~a~~~~~~~~~dVIISRGgta~~Lr~~~~i--P--VV~I---~vs~~Dil~aL~~a~--~~~~kIavVg~~~~~ 118 (225)
T 2pju_A 48 FEKAVTYIRKKLANERCDAIIAAGSNGAYLKSRLSV--P--VILI---KPSGYDVLQFLAKAG--KLTSSIGVVTYQETI 118 (225)
T ss_dssp HHHHHHHHHHHTTTSCCSEEEEEHHHHHHHHTTCSS--C--EEEE---CCCHHHHHHHHHHTT--CTTSCEEEEEESSCC
T ss_pred HHHHHHHHHHHHhcCCCeEEEeCChHHHHHHhhCCC--C--EEEe---cCCHHHHHHHHHHHH--hhCCcEEEEeCchhh
Confidence 34455555555542 45777765555432222211 1 2210 111344444443333 233468888777765
Q ss_pred ccHHHHHHHHHhCCCeEEEEEeCCchhh--hhhh-cCCCCCCCCCCChHHHHHHccCCCCCccEEEeCCHHHHHHHHHHh
Q 007800 471 VTAQEISTMIRCGQRSIIFLINNGGYTI--EVEI-HDGPYNVIKNWDYTGLVNAIHNGEGKCWTAKVRSEDELTEAMKTA 547 (589)
Q Consensus 471 ~~~~el~ta~~~~l~v~ivv~nN~~~~~--~~~~-~~~~~~~~~~~d~~~la~a~G~~~~~~~~~~v~~~~~l~~al~~a 547 (589)
..+..+.. -.++++.+..++|..-.- -.+. ..+.-.-+...--..+|+-+|. +++.+.+.+.++.||++|
T Consensus 119 ~~~~~i~~--ll~~~i~~~~~~~~ee~~~~i~~l~~~G~~vVVG~~~~~~~A~~~Gl-----~~vlI~s~eSI~~Ai~eA 191 (225)
T 2pju_A 119 PALVAFQK--TFNLRLDQRSYITEEDARGQINELKANGTEAVVGAGLITDLAEEAGM-----TGIFIYSAATVRQAFSDA 191 (225)
T ss_dssp HHHHHHHH--HHTCCEEEEEESSHHHHHHHHHHHHHTTCCEEEESHHHHHHHHHTTS-----EEEESSCHHHHHHHHHHH
T ss_pred hHHHHHHH--HhCCceEEEEeCCHHHHHHHHHHHHHCCCCEEECCHHHHHHHHHcCC-----cEEEECCHHHHHHHHHHH
Confidence 55544433 267888888888774222 1111 1221111233345889999999 999999999999999999
Q ss_pred hh
Q 007800 548 TG 549 (589)
Q Consensus 548 ~~ 549 (589)
+.
T Consensus 192 ~~ 193 (225)
T 2pju_A 192 LD 193 (225)
T ss_dssp HH
T ss_pred HH
Confidence 86
No 195
>2nap_A Protein (periplasmic nitrate reductase); nitrogenous acceptor, dissimilatory nitrate reductase; HET: MGD MES; 1.90A {Desulfovibrio desulfuricans} SCOP: b.52.2.2 c.81.1.1 PDB: 2jim_A* 2jir_A* 2jip_A* 2v45_A* 2v3v_A* 2jiq_A* 2jio_A*
Probab=21.90 E-value=11 Score=41.78 Aligned_cols=112 Identities=11% Similarity=0.051 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhc-----CCCEEEeCcccchhhHHHHHHHHHHH-hCCceEEccCCccCCCCCCCCceeeecCCCCCHH
Q 007800 222 EAAVEATADFLNKA-----VKPVLVGGPNIRVAKAQKAFIELADA-TGYPIAIMPSGKGLVPEHHPHFIGTYWGAVSSSF 295 (589)
Q Consensus 222 ~~~i~~~~~~L~~a-----~rpviv~G~g~~~~~~~~~l~~lae~-~~~Pv~tt~~~~g~~~~~~pl~~G~~~g~~~~~~ 295 (589)
+++++.+++.|++. ..-+.+.+++....+..-.+.+|+.. +|.+.+........-+...-+.... |......
T Consensus 82 deAl~~ia~~l~~~~~~~G~~~i~~~~~~~~~~e~~~~~~~~~~~~~gs~n~~~~~~~c~~~~~~~~~~~~--G~~~~~~ 159 (723)
T 2nap_A 82 DEALDLMASRFRSSIDMYGPNSVAWYGSGQCLTEESYVANKIFKGGFGTNNVDGNPRLCMASAVGGYVTSF--GKDEPMG 159 (723)
T ss_dssp HHHHHHHHHHHHHHHHHHCGGGEEEEECTTSCHHHHHHHHHHHHHTSCCCCEEEGGGGTTHHHHHHHHHHH--SSCSCSS
T ss_pred HHHHHHHHHHHHHHHHhhCCCeEEEEeCCcccchhhHHHHHHHHHhcCCCceeCCCccccchHhHHHHhcc--CCCCCCC
Q ss_pred HHHHhhhcCEEEEeCCCcCCcccccccccC----C--CCceEEEcC
Q 007800 296 CGEIVESADAYVFVGPIFNDYSSVGYSLLI----K--KEKAIIVQP 335 (589)
Q Consensus 296 ~~~~l~~aD~vl~lG~~~~~~~~~~~~~~~----~--~~~~i~id~ 335 (589)
...-+.++|+||++|+.+.+.....+..+. + +.++|.||+
T Consensus 160 ~~~d~~~ad~il~~G~n~~~~~p~~~~~~~~a~~~~~g~klividP 205 (723)
T 2nap_A 160 TYADIDQATCFFIIGSNTSEAHPVLFRRIARRKQVEPGVKIIVADP 205 (723)
T ss_dssp CGGGGGTCSEEEEESCCHHHHSHHHHHHHHHHHHHCTTCEEEEECS
T ss_pred ChhhHhHCCEEEEEcCChhHhCcHHHHHHHHHHhhCCCCEEEEEcC
No 196
>2xzm_B RPS0E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_B
Probab=21.89 E-value=1.6e+02 Score=27.50 Aligned_cols=73 Identities=18% Similarity=0.153 Sum_probs=45.9
Q ss_pred HHHHHHHHHHHHhcCCC--EEEeCcccchhhHHHHHHHHHHHhCCceE-EccCCccCCCCCCCCceeeecCCCCCHHHHH
Q 007800 222 EAAVEATADFLNKAVKP--VLVGGPNIRVAKAQKAFIELADATGYPIA-IMPSGKGLVPEHHPHFIGTYWGAVSSSFCGE 298 (589)
Q Consensus 222 ~~~i~~~~~~L~~a~rp--viv~G~g~~~~~~~~~l~~lae~~~~Pv~-tt~~~~g~~~~~~pl~~G~~~g~~~~~~~~~ 298 (589)
-..+..|++.|...++| ++++|..- .+.+.+.++|++.|.+.+ +.---.|.+-. + . ..
T Consensus 50 ~~~L~~A~~~i~~i~~~~~iLfVgtk~---~~~~~V~~~A~~~g~~yv~~~RWlgG~LTN----~-----------~-t~ 110 (241)
T 2xzm_B 50 WQKIKLAARVIAAVQHPEDVMVVCSRI---YGQRAAIKFAGYTHCKSTSSSRWTPGTLTN----Y-----------Q-TL 110 (241)
T ss_dssp HHHHHHHHHHHHHCSSGGGEEEECCSH---HHHHHHHHHHHHHTCBCCCCSSCCTTTTTC----T-----------T-CT
T ss_pred HHHHHHHHHHHHHHhCCCeEEEEECCH---HHHHHHHHHHHHhCCEEeccccccCCcccC----c-----------c-cc
Confidence 45677888888876544 77877532 367789999999998766 42111122211 0 0 02
Q ss_pred HhhhcCEEEEeCCCc
Q 007800 299 IVESADAYVFVGPIF 313 (589)
Q Consensus 299 ~l~~aD~vl~lG~~~ 313 (589)
.+...|+|+++..+-
T Consensus 111 ~~~~PdlliV~Dp~~ 125 (241)
T 2xzm_B 111 KYEEPRVLIVTDPRS 125 (241)
T ss_dssp TCCCCSEEEESCTTT
T ss_pred ccCCCCEEEEECCCc
Confidence 346799999998653
No 197
>1vim_A Hypothetical protein AF1796; structural genomics, unknown function; 1.36A {Archaeoglobus fulgidus} SCOP: c.80.1.3
Probab=21.62 E-value=3.8e+02 Score=23.56 Aligned_cols=45 Identities=18% Similarity=0.207 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHhcCCCEEEeCcccchhhHHHHHHHHHHHhCCceEE
Q 007800 222 EAAVEATADFLNKAVKPVLVGGPNIRVAKAQKAFIELADATGYPIAI 268 (589)
Q Consensus 222 ~~~i~~~~~~L~~a~rpviv~G~g~~~~~~~~~l~~lae~~~~Pv~t 268 (589)
.+.+++++++|.+++ -++++|.|....-+.....+| .++|.++..
T Consensus 34 ~~~l~~~~~~i~~a~-~I~i~G~G~S~~~A~~~~~~l-~~~g~~~~~ 78 (200)
T 1vim_A 34 LETVGEMIKLIDSAR-SIFVIGAGRSGYIAKAFAMRL-MHLGYTVYV 78 (200)
T ss_dssp HHHHHHHHHHHHHSS-CEEEECSHHHHHHHHHHHHHH-HHTTCCEEE
T ss_pred HHHHHHHHHHHhcCC-EEEEEEecHHHHHHHHHHHHH-HhcCCeEEE
Confidence 457889999999986 577888887654333333333 467888876
No 198
>1hqk_A 6,7-dimethyl-8-ribityllumazine synthase; analysi stability, vitamin biosynthesis, transferase; 1.60A {Aquifex aeolicus} SCOP: c.16.1.1 PDB: 1nqu_A* 1nqv_A* 1nqw_A* 1nqx_A*
Probab=21.56 E-value=1.2e+02 Score=26.23 Aligned_cols=33 Identities=18% Similarity=0.409 Sum_probs=25.3
Q ss_pred HHHHHHHHHcCCC----EEEecCCcchHHHHH-hhhcC
Q 007800 31 RHLARRLVEIGAK----DVFSVPGDFNLTLLD-HLIAE 63 (589)
Q Consensus 31 ~~i~~~L~~~GV~----~vfg~pG~~~~~l~~-al~~~ 63 (589)
+.-.+.|+++|++ .++-+||....|+.- .|.+.
T Consensus 32 ~ga~~~l~~~gv~~~~i~v~~VPGafEiP~aa~~la~~ 69 (154)
T 1hqk_A 32 EGAIDCIVRHGGREEDITLVRVPGSWEIPVAAGELARK 69 (154)
T ss_dssp HHHHHHHHHTTCCGGGEEEEEESSGGGHHHHHHHHHTC
T ss_pred HHHHHHHHHcCCCccceEEEECCcHHHHHHHHHHHHhc
Confidence 3445788899997 799999999999874 45443
No 199
>2keg_A PLNK; protein, peptide, antimicrobial protein; NMR {Lactobacillus plantarum} PDB: 2keh_A
Probab=21.42 E-value=45 Score=19.53 Aligned_cols=14 Identities=29% Similarity=0.743 Sum_probs=11.0
Q ss_pred cchhhHHHHHHHHh
Q 007800 439 GSIGWSVGATLGYA 452 (589)
Q Consensus 439 g~mG~~l~~aiGaa 452 (589)
.++|++++.|.|+-
T Consensus 6 ngigyaigyafgav 19 (32)
T 2keg_A 6 NGIGYAIGYAFGAV 19 (32)
T ss_dssp SSSHHHHHHHHHHH
T ss_pred cCcceeehhhhhHH
Confidence 45889998888863
No 200
>3bfj_A 1,3-propanediol oxidoreductase; opportunistic pathogens, decamer, structural genomics,struct proteomics in europe, spine; 2.70A {Klebsiella pneumoniae}
Probab=21.20 E-value=80 Score=31.79 Aligned_cols=33 Identities=21% Similarity=0.284 Sum_probs=24.5
Q ss_pred cCCCEEEeCcccchh--hHHHHHHHHHHHhCCceE
Q 007800 235 AVKPVLVGGPNIRVA--KAQKAFIELADATGYPIA 267 (589)
Q Consensus 235 a~rpviv~G~g~~~~--~~~~~l~~lae~~~~Pv~ 267 (589)
.+|++|+.+.+.... +..+.+.+..+..|+.+.
T Consensus 33 ~~~~livtd~~~~~~~~g~~~~v~~~L~~~g~~~~ 67 (387)
T 3bfj_A 33 GKKALLVTDKGLRAIKDGAVDKTLHYLREAGIEVA 67 (387)
T ss_dssp CSEEEEECCTTTC--CCSSHHHHHHHHHHTTCEEE
T ss_pred CCEEEEEECcchhhccchHHHHHHHHHHHcCCeEE
Confidence 478999998888766 567888888788888764
No 201
>1h0h_A Formate dehydrogenase (large subunit); tungsten selenium formate dehydrogenase, selenocysteine, molybdopterin, MGD, iron-sulphur cluster; HET: 2MD MGD EPE; 1.8A {Desulfovibrio gigas} SCOP: b.52.2.2 c.81.1.1
Probab=20.88 E-value=1.4e+02 Score=34.36 Aligned_cols=97 Identities=13% Similarity=0.223 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhc-----------------CCCEEEeCcccchhhHHHHHHHHHHHhCCceEEccC-------------
Q 007800 222 EAAVEATADFLNKA-----------------VKPVLVGGPNIRVAKAQKAFIELADATGYPIAIMPS------------- 271 (589)
Q Consensus 222 ~~~i~~~~~~L~~a-----------------~rpviv~G~g~~~~~~~~~l~~lae~~~~Pv~tt~~------------- 271 (589)
+++++.+++.|++. ..-+.+.|++....+..-.+.+|+..+|.+-+.+..
T Consensus 89 deAl~~ia~~l~~i~~~~g~~~~~~G~~~~~~~~i~~~~~~~~~~e~~~~~~~~~~~~Gs~n~~~~~~~c~~~~~~~~~~ 168 (977)
T 1h0h_A 89 DWMLDTIAERVAKTREATFVTKNAKGQVVNRCDGIASVGSAAMDNEECWIYQAWLRSLGLFYIEHQARIXHSATVAALAE 168 (977)
T ss_dssp HHHHHHHHHHHHHHHHHHEEEECTTSCEEEEECSEEEECCTTSCHHHHHHHHHHHHHTTBCCEECTHHHHTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhcccccccccccccCceEEEEeCCCcccHHHHHHHHHHHHcCCCccccccccccchHHHHHHH
Q ss_pred --CccCCCCCCCCceeeecCCCCCHHHHHHhhhcCEEEEeCCCcCCcccccccccC----CCCceEEEcC
Q 007800 272 --GKGLVPEHHPHFIGTYWGAVSSSFCGEIVESADAYVFVGPIFNDYSSVGYSLLI----KKEKAIIVQP 335 (589)
Q Consensus 272 --~~g~~~~~~pl~~G~~~g~~~~~~~~~~l~~aD~vl~lG~~~~~~~~~~~~~~~----~~~~~i~id~ 335 (589)
|.+..+.+.+-. .+||+||++|+.+.+.....+..+. ++.|+|.||+
T Consensus 169 ~~G~~~~~~~~~D~-----------------~~ad~il~~G~N~~~~~p~~~~~~~~a~~~G~klivIDP 221 (977)
T 1h0h_A 169 SYGRGAMTNHWIDL-----------------KNSDVILMMGSNPAENHPISFKWVMRAKDKGATLIHVDP 221 (977)
T ss_dssp HHSCCSCSSCTGGG-----------------GGCSEEEEESCCHHHHSTTHHHHHHHHHHTTCEEEEECS
T ss_pred HhCCCCCCCCHHHH-----------------hhCCEEEEECCChHHhCcHHHHHHHHHHHCCCeEEEECC
No 202
>1xmp_A PURE, phosphoribosylaminoimidazole carboxylase; purine biosynthesis, spine, lyase; 1.80A {Bacillus anthracis} SCOP: c.23.8.1
Probab=20.70 E-value=2.5e+02 Score=24.64 Aligned_cols=52 Identities=13% Similarity=0.005 Sum_probs=36.0
Q ss_pred cccCCCcccHHHHHHHHHHHcCCCEEEecCCcc-hHHHHHhhhc---CCCCeEEec
Q 007800 20 VRGGASVGTLGRHLARRLVEIGAKDVFSVPGDF-NLTLLDHLIA---EPELNLVGC 71 (589)
Q Consensus 20 ~~~~~~~~~~a~~i~~~L~~~GV~~vfg~pG~~-~~~l~~al~~---~~~i~~v~~ 71 (589)
..|+.+.+..++-.++.|++.||.+=.++-+-+ ...-+..+.+ ..++++|.+
T Consensus 17 imGS~SD~~v~~~a~~~L~~~Gi~~dv~V~SaHR~p~~l~~~~~~a~~~g~~ViIa 72 (170)
T 1xmp_A 17 IMGSTSDWETMKYACDILDELNIPYEKKVVSAHRTPDYMFEYAETARERGLKVIIA 72 (170)
T ss_dssp EESSGGGHHHHHHHHHHHHHTTCCEEEEECCTTTSHHHHHHHHHHTTTTTCCEEEE
T ss_pred EECcHHHHHHHHHHHHHHHHcCCCEEEEEEeccCCHHHHHHHHHHHHhCCCcEEEE
Confidence 445566789999999999999999999999864 3333444432 134555543
No 203
>3j21_Z 50S ribosomal protein L30E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=20.66 E-value=2.2e+02 Score=22.17 Aligned_cols=43 Identities=9% Similarity=0.125 Sum_probs=30.2
Q ss_pred HHHHHHHHhcCCCEEEeCcccchhhHHHHHHHHHHHhCCceEEc
Q 007800 226 EATADFLNKAVKPVLVGGPNIRVAKAQKAFIELADATGYPIAIM 269 (589)
Q Consensus 226 ~~~~~~L~~a~rpviv~G~g~~~~~~~~~l~~lae~~~~Pv~tt 269 (589)
+++.+.|++.+--++++-..+. .+....+..+|+..++|++..
T Consensus 21 ~~v~kai~~gka~lViiA~D~~-~~~~~~i~~~c~~~~ip~~~~ 63 (99)
T 3j21_Z 21 NETIRLAKTGGAKLIIVAKNAP-KEIKDDIYYYAKLSDIPVYEF 63 (99)
T ss_dssp HHHHHHHHHTCCSEEEEECCCC-HHHHHHHHHHHHHTTCCEEEE
T ss_pred HHHHHHHHcCCccEEEEeCCCC-HHHHHHHHHHHHHcCCCEEEe
Confidence 4555667666655555555554 457889999999999998763
No 204
>3ors_A N5-carboxyaminoimidazole ribonucleotide mutase; isomerase, isomerase,biosynthetic protein; 1.45A {Staphylococcus aureus subsp}
Probab=20.55 E-value=2.2e+02 Score=24.84 Aligned_cols=32 Identities=13% Similarity=-0.091 Sum_probs=27.2
Q ss_pred ccCCCcccHHHHHHHHHHHcCCCEEEecCCcc
Q 007800 21 RGGASVGTLGRHLARRLVEIGAKDVFSVPGDF 52 (589)
Q Consensus 21 ~~~~~~~~~a~~i~~~L~~~GV~~vfg~pG~~ 52 (589)
.|+.+.+..++-.++.|++.||.|=.++-+-+
T Consensus 10 mgs~SD~~v~~~a~~~l~~~gi~~ev~V~SaH 41 (163)
T 3ors_A 10 MGSSSDWKIMQESCNMLDYFEIPYEKQVVSAH 41 (163)
T ss_dssp ESCGGGHHHHHHHHHHHHHTTCCEEEEECCTT
T ss_pred ECcHHHHHHHHHHHHHHHHcCCCEEEEEECCc
Confidence 34455788999999999999999999999864
No 205
>1rvv_A Riboflavin synthase; transferase, flavoprotein; HET: INI; 2.40A {Bacillus subtilis} SCOP: c.16.1.1 PDB: 1zis_A* 1vsw_A 1vsx_A 3jv8_A
Probab=20.27 E-value=1.2e+02 Score=26.25 Aligned_cols=32 Identities=25% Similarity=0.430 Sum_probs=24.9
Q ss_pred HHHHHHHHHcCCC----EEEecCCcchHHHHH-hhhc
Q 007800 31 RHLARRLVEIGAK----DVFSVPGDFNLTLLD-HLIA 62 (589)
Q Consensus 31 ~~i~~~L~~~GV~----~vfg~pG~~~~~l~~-al~~ 62 (589)
+.-.+.|+++|++ .++-+||....|+.- .|.+
T Consensus 32 ~ga~~~l~~~gv~~~~i~v~~VPGafEiP~aa~~la~ 68 (154)
T 1rvv_A 32 SGAEDALLRHGVDTNDIDVAWVPGAFEIPFAAKKMAE 68 (154)
T ss_dssp HHHHHHHHHTTCCGGGEEEEEESSGGGHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCccceEEEECCcHHHHHHHHHHHHh
Confidence 3445788999997 799999999999874 4444
Done!