RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= 007800
(589 letters)
>gnl|CDD|215311 PLN02573, PLN02573, pyruvate decarboxylase.
Length = 578
Score = 1279 bits (3312), Expect = 0.0
Identities = 488/578 (84%), Positives = 529/578 (91%)
Query: 12 QPGSAPAPVRGGASVGTLGRHLARRLVEIGAKDVFSVPGDFNLTLLDHLIAEPELNLVGC 71
Q + +S TLGRHLARRLVEIG DVFSVPGDFNLTLLDHLIAEP LNL+GC
Sbjct: 1 QSSAPKPATPVSSSDATLGRHLARRLVEIGVTDVFSVPGDFNLTLLDHLIAEPGLNLIGC 60
Query: 72 CNELNAGYAADGYARSRGVGACVVTFTVGGLSVLNAIAGAYSENLPVICIVGGPNSNDYG 131
CNELNAGYAADGYAR+RGVGACVVTFTVGGLSVLNAIAGAYSENLPVICIVGGPNSNDYG
Sbjct: 61 CNELNAGYAADGYARARGVGACVVTFTVGGLSVLNAIAGAYSENLPVICIVGGPNSNDYG 120
Query: 132 TNRILHHTIGLPDFTQELRCFQAITCSQAVVNNLGDAHELIDTAISTALKESKPVYISIS 191
TNRILHHTIGLPDF+QELRCFQ +TC QAV+NNL DAHELIDTAISTALKESKPVYIS+S
Sbjct: 121 TNRILHHTIGLPDFSQELRCFQTVTCYQAVINNLEDAHELIDTAISTALKESKPVYISVS 180
Query: 192 CNLPGIPHPTFARDPVPFFLAPKVSNQLGLEAAVEATADFLNKAVKPVLVGGPNIRVAKA 251
CNL IPHPTF+R+PVPFFL P++SN++ LEAAVEA A+FLNKAVKPVLVGGP +RVAKA
Sbjct: 181 CNLAAIPHPTFSREPVPFFLTPRLSNKMSLEAAVEAAAEFLNKAVKPVLVGGPKLRVAKA 240
Query: 252 QKAFIELADATGYPIAIMPSGKGLVPEHHPHFIGTYWGAVSSSFCGEIVESADAYVFVGP 311
KAF+ELADA+GYP+A+MPS KGLVPEHHPHFIGTYWGAVS+ FC EIVESADAY+F GP
Sbjct: 241 CKAFVELADASGYPVAVMPSAKGLVPEHHPHFIGTYWGAVSTPFCAEIVESADAYLFAGP 300
Query: 312 IFNDYSSVGYSLLIKKEKAIIVQPHRVTVGNGPSLGWVFMADFLSALAKKLRKNTTALEN 371
IFNDYSSVGYSLL+KKEKAIIVQP RVT+GNGP+ G V M DFL ALAK+++KNTTA EN
Sbjct: 301 IFNDYSSVGYSLLLKKEKAIIVQPDRVTIGNGPAFGCVLMKDFLEALAKRVKKNTTAYEN 360
Query: 372 YRRIYVPPGIPVKRAQNEPLRVNVLFKHIQDMLSGDTAVIAETGDSWFNCQKLRLPENCG 431
Y+RI+VP G P+K EPLRVNVLFKHIQ MLSGDTAVIAETGDSWFNCQKL+LPE CG
Sbjct: 361 YKRIFVPEGEPLKSEPGEPLRVNVLFKHIQKMLSGDTAVIAETGDSWFNCQKLKLPEGCG 420
Query: 432 YEFQMQYGSIGWSVGATLGYAQAAKDKRVIACIGDGSFQVTAQEISTMIRCGQRSIIFLI 491
YEFQMQYGSIGWSVGATLGYAQAA DKRVIACIGDGSFQVTAQ++STMIRCGQ+SIIFLI
Sbjct: 421 YEFQMQYGSIGWSVGATLGYAQAAPDKRVIACIGDGSFQVTAQDVSTMIRCGQKSIIFLI 480
Query: 492 NNGGYTIEVEIHDGPYNVIKNWDYTGLVNAIHNGEGKCWTAKVRSEDELTEAMKTATGEQ 551
NNGGYTIEVEIHDGPYNVIKNW+YTGLV+AIHNGEGKCWTAKVR+E+EL EA+ TATGE+
Sbjct: 481 NNGGYTIEVEIHDGPYNVIKNWNYTGLVDAIHNGEGKCWTAKVRTEEELIEAIATATGEK 540
Query: 552 KDSLCFIEVFVHKDDTSKELLEWGSRVSAANSRPPNPQ 589
KD LCFIEV VHKDDTSKELLEWGSRVSAANSRPPNPQ
Sbjct: 541 KDCLCFIEVIVHKDDTSKELLEWGSRVSAANSRPPNPQ 578
>gnl|CDD|226470 COG3961, COG3961, Pyruvate decarboxylase and related thiamine
pyrophosphate-requiring enzymes [Carbohydrate transport
and metabolism / Coenzyme metabolism / General function
prediction only].
Length = 557
Score = 545 bits (1406), Expect = 0.0
Identities = 219/564 (38%), Positives = 317/564 (56%), Gaps = 17/564 (3%)
Query: 28 TLGRHLARRLVEIGAKDVFSVPGDFNLTLLDHLIAEPELNLVGCCNELNAGYAADGYARS 87
T+G +L RL ++G K +F VPGD+NL+LLD + + P L VG NELNA YAADGYAR
Sbjct: 5 TVGDYLFDRLAQLGIKSIFGVPGDYNLSLLDKIYSVPGLRWVGNANELNAAYAADGYARL 64
Query: 88 RGVGACVVTFTVGGLSVLNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQ 147
G+ A V TF VG LS LN IAG+Y+E++PV+ IVG P ++ + +LHHT+G DF
Sbjct: 65 NGISALVTTFGVGELSALNGIAGSYAEHVPVVHIVGVPTTSAQASGLLLHHTLGDGDFKV 124
Query: 148 ELRCFQAITCSQAVVNNLGDAHELIDTAISTALKESKPVYISISCNLPG--IPHPTFARD 205
R + ITC+QA++ ++ A ID I TALK+ +PVYI + ++ I P
Sbjct: 125 FHRMSKEITCAQAMLTDINTAPREIDRVIRTALKQRRPVYIGLPADVADLPIEAPL---- 180
Query: 206 PVPFFLAPKVSNQLGLEAAVEATADFLNKAVKPVLVGGPNIRVAKAQKAFIELADATGYP 265
P L K S+ L ++ A+ +NKA KPV++ + +K +L +ATG+P
Sbjct: 181 -TPLDLQLKTSDPEALSEVIDTIAELINKAKKPVILADALVSRFGLEKELKKLINATGFP 239
Query: 266 IAIMPSGKGLVPEHHPHFIGTYWGAVSSSFCGEIVESADAYVFVGPIFNDYSSVGYSLLI 325
+A +P GKG++ E HP+++G Y G +S E VESAD + +G + D+++ G++
Sbjct: 240 VATLPMGKGVIDESHPNYLGVYNGKLSEPEVREAVESADLILTIGVLLTDFNTGGFTYQY 299
Query: 326 KKEKAIIVQPHRVTVGNGPSLGWVFMADFLSALAKKLRKNTTALENYRRIYVPPGIP--V 383
K I + P V + + + M D L LAKK+ K + + P P
Sbjct: 300 KPANIIEIHPDSVKIKDA-VFTNLSMKDALQELAKKIDKRNLS---APPVAYPARTPPTP 355
Query: 384 KRAQNEPLRVNVLFKHIQDMLSGDTAVIAETGDSWFNCQKLRLPENCGYEFQMQYGSIGW 443
NEPL L+ +Q+ L +IAETG S+F +RLP+ + Q +GSIG+
Sbjct: 356 YPPANEPLTQEWLWNTVQNFLKPGDVIIAETGTSFFGALDIRLPKGATFISQPLWGSIGY 415
Query: 444 SVGATLGYAQAAKDKRVIACIGDGSFQVTAQEISTMIRCGQRSIIFLINNGGYTIEVEIH 503
++ A LG A AA D+RVI IGDGS Q+T QEISTMIR G + IIF++NN GYTIE IH
Sbjct: 416 TLPAALGAALAAPDRRVILFIGDGSLQLTVQEISTMIRWGLKPIIFVLNNDGYTIERAIH 475
Query: 504 --DGPYNVIKNWDYTGLVNAIHNGEGKCWTAKVRSEDELTEAMKTATGEQKDSLCFIEVF 561
PYN I++WDYT L A G+ + + +EL A+ A D + IEV
Sbjct: 476 GPTAPYNDIQSWDYTALPEAFGAKNGEA-KFRATTGEELALALDVAF-ANNDRIRLIEVM 533
Query: 562 VHKDDTSKELLEWGSRVSAANSRP 585
+ D + L++ +A N++
Sbjct: 534 LPVLDAPELLIDQAKATAAQNNKQ 557
>gnl|CDD|132434 TIGR03393, indolpyr_decarb, indolepyruvate decarboxylase, Erwinia
family. A family of closely related, thiamine
pyrophosphate-dependent enzymes includes indolepyruvate
decarboxylase (EC 4.1.1.74), phenylpyruvate
decarboxylase (EC 4.1.1.43), pyruvate decarboxylase (EC
4.1.1.1), branched-chain alpha-ketoacid decarboxylase,
etc.. Members of this group of homologs may overlap in
specificity. Within the larger family, this model
represents a clade of bacterial indolepyruvate
decarboxylases, part of a pathway for biosynthesis of
the plant hormone indole-3-acetic acid. Typically, these
species interact with plants, as pathogens or as
beneficial, root-associated bacteria [Central
intermediary metabolism, Other].
Length = 539
Score = 334 bits (859), Expect = e-108
Identities = 189/543 (34%), Positives = 275/543 (50%), Gaps = 18/543 (3%)
Query: 28 TLGRHLARRLVEIGAKDVFSVPGDFNLTLLDHLIAEPELNLVGCCNELNAGYAADGYARS 87
T+G +L RL +IG +F VPGD+NL LDH+I P++ VGC NELNA YAADGYAR
Sbjct: 2 TVGDYLLDRLTDIGIDHLFGVPGDYNLQFLDHVIDSPDICWVGCANELNAAYAADGYARC 61
Query: 88 RGVGACVVTFTVGGLSVLNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQ 147
+G A + TF VG LS +N IAG+Y+E+LPVI IVG P + +LHHT+G DF
Sbjct: 62 KGAAALLTTFGVGELSAINGIAGSYAEHLPVIHIVGAPGTAAQQRGELLHHTLGDGDFRH 121
Query: 148 ELRCFQAITCSQAVVNNLGDAHELIDTAISTALKESKPVYISISCNLPGIPHPTFARDPV 207
R +T +QAV+ E ID I+TAL+E +P Y+ + ++ PV
Sbjct: 122 FYRMAAEVTVAQAVLTEQNATAE-IDRVITTALRERRPGYLMLPVDVAAKA----VTPPV 176
Query: 208 -PFFLAPKVSNQLGLEAAVEATADFLNKAVKPVLVGGPNIRVAKAQKAFIELADATGYPI 266
P L A +A + L A + L+ + A + P
Sbjct: 177 NPLVTHKPAHADSALRAFRDAAENKLAMAKRVSLLADFLALRHGLKHALQKWVKEVPMPH 236
Query: 267 AIMPSGKGLVPEHHPHFIGTYWGAVSSSFCGEIVESADAYVFVGPIFNDYSSVGYSLLIK 326
A + GKG++ E F GTY G+ S+ E +E ADA + VG F D + G++ +
Sbjct: 237 ATLLMGKGILDEQQAGFYGTYSGSASTGAVKEAIEGADAVICVGVRFTDTITAGFTHQLT 296
Query: 327 KEKAIIVQPHRVTVGNGPSLGWVFMADFLSALAKKLRKNTTALENYRRIYVPPGIPVKRA 386
E+ I VQPH VGN G + M D + L + L +P P +
Sbjct: 297 PEQTIDVQPHAARVGNVWFTG-IPMNDAIETLVELCEH--AGLMWSSSGAIPFPQPDE-- 351
Query: 387 QNEPLRVNVLFKHIQDMLSGDTAVIAETGDSWFNCQKLRLPENCGYEFQMQYGSIGWSVG 446
L ++ +Q L ++A+ G S F LRLP + + Q +GSIG+++
Sbjct: 352 SRSALSQENFWQTLQTFLRPGDIILADQGTSAFGAADLRLPADVNFIVQPLWGSIGYTLP 411
Query: 447 ATLGYAQAAKDKRVIACIGDGSFQVTAQEISTMIRCGQRSIIFLINNGGYTIEVEIHDGP 506
A G A ++RVI IGDGS Q+T QE+ +M+R Q II ++NN GYT+E IH
Sbjct: 412 AAFGAQTACPNRRVILLIGDGSAQLTIQELGSMLRDKQHPIILVLNNEGYTVERAIHGAE 471
Query: 507 --YNVIKNWDYTGLVNAIH-NGEGKCWTAKVRSEDELTEAMKTATGEQKDSLCFIEVFVH 563
YN I W++T L A+ + + +CW +V ++L + ++ ++ SL IEV +
Sbjct: 472 QRYNDIALWNWTHLPQALSLDPQSECW--RVSEAEQLADVLEKVAAHERLSL--IEVVLP 527
Query: 564 KDD 566
K D
Sbjct: 528 KAD 530
>gnl|CDD|238963 cd02005, TPP_PDC_IPDC, Thiamine pyrophosphate (TPP) family,
PDC_IPDC subfamily, TPP-binding module; composed of
proteins similar to pyruvate decarboxylase (PDC) and
indolepyruvate decarboxylase (IPDC). PDC, a key enzyme
in alcoholic fermentation, catalyzes the conversion of
pyruvate to acetaldehyde and CO2. It is able to utilize
other 2-oxo acids as substrates. In plants and various
plant-associated bacteria, IPDC plays a role in the
indole-3-pyruvic acid (IPA) pathway, a
tryptophan-dependent biosynthetic route to
indole-3-acetaldehyde (IAA). IPDC catalyzes the
decarboxylation of IPA to IAA. Both PDC and IPDC depend
on TPP and Mg2+ as cofactors.
Length = 183
Score = 270 bits (694), Expect = 3e-88
Identities = 88/185 (47%), Positives = 113/185 (61%), Gaps = 4/185 (2%)
Query: 390 PLRVNVLFKHIQDMLSGDTAVIAETGDSWFNCQKLRLPENCGYEFQMQYGSIGWSVGATL 449
PL L++ +Q+ L + ++AETG SWF L+LP+ + Q +GSIG+SV A L
Sbjct: 1 PLTQARLWQQVQNFLKPNDILVAETGTSWFGALDLKLPKGTRFISQPLWGSIGYSVPAAL 60
Query: 450 GYAQAAKDKRVIACIGDGSFQVTAQEISTMIRCGQRSIIFLINNGGYTIEVEIHDG--PY 507
G A AA D+RVI +GDGSFQ+T QE+STMIR G IIFLINN GYTIE IH Y
Sbjct: 61 GAALAAPDRRVILLVGDGSFQMTVQELSTMIRYGLNPIIFLINNDGYTIERAIHGPEASY 120
Query: 508 NVIKNWDYTGLVNAIHNGEGKCWTAKVRSEDELTEAMKTATGEQKDSLCFIEVFVHKDDT 567
N I NW+YT L G G + +V++E EL EA+K A +D L IEV + KDD
Sbjct: 121 NDIANWNYTKLPEVF-GGGGGGLSFRVKTEGELDEALKDAL-FNRDKLSLIEVILPKDDA 178
Query: 568 SKELL 572
+ L
Sbjct: 179 PEALK 183
>gnl|CDD|132921 cd07038, TPP_PYR_PDC_IPDC_like, Pyrimidine (PYR) binding domain of
pyruvate decarboxylase (PDC), indolepyruvate
decarboxylase (IPDC) and related proteins. Thiamine
pyrophosphate (TPP family), pyrimidine (PYR) binding
domain of pyruvate decarboxylase (PDC) and
indolepyruvate decarboxylase (IPDC) subfamily. The PYR
domain is found in many key metabolic enzymes which use
TPP (also known as thiamine diphosphate) as a cofactor.
TPP binds in the cleft formed by a PYR domain and a PP
domain. The PYR domain, binds the aminopyrimidine ring
of TPP, the PP domain binds the diphosphate residue. The
PYR and PP domains have a common fold, but do not share
strong sequence conservation. The PP domain is not
included in this sub-family. Most TPP-dependent enzymes
have the PYR and PP domains on the same subunit although
these domains can be alternatively arranged in the
primary structure. TPP-dependent enzymes are
multisubunit proteins, the smallest catalytic unit being
a dimer-of-active sites, for many the active sites lie
between PP and PYR domains on different subunits. PDC
catalyzes the conversion of pyruvate to acetaldehyde and
CO2 in alcoholic fermentation. IPDC plays a role in the
indole-3-pyruvic acid (IPA) pathway in plants and
various plant-associated bacteria, it catalyzes the
decarboxylation of IPA to IAA. Also belonging to this
group is Mycobacterium tuberculosis alpha-keto acid
decarboxylase (MtKDC) which participates in amino acid
degradation via the Ehrlich pathway, and Lactococcus
lactis branched-chain keto acid decarboxylase (KdcA) an
enzyme identified as being involved in cheese ripening,
which exhibits a very broad substrate range in the
decarboxylation and carboligation reactions.
Length = 162
Score = 268 bits (688), Expect = 1e-87
Identities = 85/162 (52%), Positives = 111/162 (68%)
Query: 31 RHLARRLVEIGAKDVFSVPGDFNLTLLDHLIAEPELNLVGCCNELNAGYAADGYARSRGV 90
+L RL ++G K VF VPGD+NL LLD + P L VG CNELNAGYAADGYAR +G+
Sbjct: 1 EYLLERLKQLGVKHVFGVPGDYNLPLLDAIEENPGLRWVGNCNELNAGYAADGYARVKGL 60
Query: 91 GACVVTFTVGGLSVLNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQELR 150
GA V T+ VG LS LN IAGAY+E++PV+ IVG P++ + +LHHT+G DF L+
Sbjct: 61 GALVTTYGVGELSALNGIAGAYAEHVPVVHIVGAPSTKAQASGLLLHHTLGDGDFDVFLK 120
Query: 151 CFQAITCSQAVVNNLGDAHELIDTAISTALKESKPVYISISC 192
F+ ITC+ A + + +A E ID + TAL+ES+PVYI I
Sbjct: 121 MFEEITCAAARLTDPENAAEEIDRVLRTALRESRPVYIEIPR 162
>gnl|CDD|223107 COG0028, IlvB, Thiamine pyrophosphate-requiring enzymes
[acetolactate synthase, pyruvate dehydrogenase
(cytochrome), glyoxylate carboligase, phosphonopyruvate
decarboxylase] [Amino acid transport and metabolism /
Coenzyme metabolism].
Length = 550
Score = 207 bits (529), Expect = 1e-59
Identities = 144/565 (25%), Positives = 231/565 (40%), Gaps = 61/565 (10%)
Query: 28 TLGRHLARRLVEIGAKDVFSVPGDFNLTLLDHLIAEPELNLVGCCNELNAGYAADGYAR- 86
T L L G VF +PG L L D L + + +E A +AADGYAR
Sbjct: 3 TGAEALVEALEANGVDTVFGIPGGSILPLYDALYDS-GIRHILVRHEQGAAFAADGYARA 61
Query: 87 SRGVGACVVTFTVGGLSVLNAIAGAYSENLPVICIVGGPNSNDYGTNRILH-HTIGLPDF 145
+ G C+VT G ++L +A AY +++P++ I G ++ GT+ +GL
Sbjct: 62 TGKPGVCLVTSGPGATNLLTGLADAYMDSVPLLAITGQVPTSLIGTDAFQEVDQVGL--- 118
Query: 146 TQELRCFQAITCSQAVVNNLGDAHELIDTAISTALKE-SKPVYISISCNLPGIPHPTFAR 204
F+ IT V + D E++ A AL PV + + ++
Sbjct: 119 ------FRPITKYNFEVRSPEDIPEVVARAFRIALSGRPGPVVVDLPKDVLAAEAEEPGP 172
Query: 205 DPVPFFLAPKVSNQLGLEAAVEATADFLNKAVKPVLVGGPNIRVAKAQKAFIELADATGY 264
+P P A+ A+ L +A +PV++ G +R A A + ELA+ G
Sbjct: 173 EPAI---LPPYRPAPPPPEAIRKAAELLAEAKRPVILAGGGVRRAGASEELRELAEKLGA 229
Query: 265 PIAIMPSGKGLVPEHHPHFIGTYWGAVSSSFCGEIVESADAYVFVGPIFNDYSSVGYSLL 324
P+ GKG VPE HP +G G + E +E AD + VG F+D + GYS
Sbjct: 230 PVVTTLMGKGAVPEDHPLSLGML-GMHGTKAANEALEEADLLLAVGARFDDRVT-GYSGF 287
Query: 325 IKKEKAI--------IVQPHRVTVGNGPSLGWVFMADFLSALAKKLRKNTTA-------- 368
I I + + V V L AL ++L+ A
Sbjct: 288 APPAAIIHIDIDPAEIGKNYPVDVPI-----VGDAKATLEALLEELKPERAAWLEELLEA 342
Query: 369 LENYRRIYVPPGIPVKRAQNEPLRVNVLFKHIQDMLSGDTAVIAETGDS--WFNCQKLRL 426
YR + + ++V ++++L D V+ + G W +
Sbjct: 343 RAAYRDLALEELADDGIKPQYVIKV------LRELLPDDAIVVTDVGQHQMWAA-RYFDF 395
Query: 427 PENCGYEFQMQYGSIGWSVGATLGYAQAAKDKRVIACIGDGSFQVTAQEISTMIRCGQRS 486
+ G++G+ + A +G AA D++V+A GDG F + QE+ T +R G
Sbjct: 396 YRPRRFLTSGGLGTMGFGLPAAIGAKLAAPDRKVVAIAGDGGFMMNGQELETAVRYGLPV 455
Query: 487 IIFLINNGGYTI----EVEIHDGPYNVIK--NWDYTGLVNAIHNGEGKCWTAKVRSEDEL 540
I ++NNGGY + + + G Y+ N D+ L A +G +V + +EL
Sbjct: 456 KIVVLNNGGYGMVRQWQELFYGGRYSGTDLGNPDFVKLAEAYG-AKG----IRVETPEEL 510
Query: 541 TEAMKTATGEQKDSLCFIEVFVHKD 565
EA++ A D I+V V +
Sbjct: 511 EEALEEA--LASDGPVLIDVVVDPE 533
>gnl|CDD|132435 TIGR03394, indol_phenyl_DC, indolepyruvate/phenylpyruvate
decarboxylase, Azospirillum family. A family of closely
related, thiamine pyrophosphate-dependent enzymes
includes indolepyruvate decarboxylase (EC 4.1.1.74),
phenylpyruvate decarboxylase (EC 4.1.1.43), pyruvate
decarboxylase (EC 4.1.1.1), branched-chain
alpha-ketoacid decarboxylase, etc.. Members of this
group of homologs may overlap in specificity. This model
represents a clade that includes a Azospirillum
brasilense member active as both phenylpyruvate
decarboxylase and indolepyruvate decarboxylase.
Length = 535
Score = 185 bits (472), Expect = 7e-52
Identities = 149/553 (26%), Positives = 243/553 (43%), Gaps = 33/553 (5%)
Query: 28 TLGRHLARRLVEIGAKDVFSVPGDFNLTLLDHLIAEPELNLVGCCNELNAGYAADGYARS 87
L L R L + GA+++F +PGDF L + L L +E G+AAD AR
Sbjct: 1 KLAEALLRALKDRGAQEMFGIPGDFALPFFKVIEETGILPLHTLSHEPAVGFAADAAARY 60
Query: 88 RG-VGACVVTFTVGGLSVLNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFT 146
RG +G VT+ G +++NAIAGAY+E PV+ I G P + + +LHH D
Sbjct: 61 RGTLGVAAVTYGAGAFNMVNAIAGAYAEKSPVVVISGAPGTTEGNAGLLLHHQGRTLD-- 118
Query: 147 QELRCFQAITCSQAVVNNLGDAHELIDTAISTALKESKPVYISISCNLPGIPHPTFARDP 206
+ + F+ +TC QAV+++ A I + +A + S+PVY+ I ++ +P
Sbjct: 119 SQFQVFKEVTCDQAVLDDPATAPAEIARVLGSARELSRPVYLEIPRDMVNAE-----VEP 173
Query: 207 VPFFLAPKVSNQLGLEAAVEATADFLNKAVKPVLVGGPNIRVAKAQKAFIELADATGYPI 266
VP A V L+A + + A PV++ +R + ELA G P+
Sbjct: 174 VPDDPAWPVDRD-ALDACADEVLARMRSATSPVMMVCVEVRRYGLEAKVAELAQRLGVPV 232
Query: 267 AIMPSGKGLVPEHHPHFIGTYWGAVSSSFCGEIVESADAYVFVGPIFNDYSSVGYSLLIK 326
G+GL+ + +GTY G + +VE +D + +G I +D + I
Sbjct: 233 VTTFMGRGLLADAPTPPLGTYLGVAGDAELSRLVEESDGLLLLGVILSDTNFAVSQRKID 292
Query: 327 KEKAIIVQPHRVTVG-----NGPSLGWVFMADFLSALAKKLRKNTTALENYRRIYVPPGI 381
+ I VT+G + P G V D L AL L + P G+
Sbjct: 293 LRRTIHAFDRAVTLGYHVYADIPLAGLV---DALLALLCGLPPSDRTTRGKGPHAYPRGL 349
Query: 382 PVKRAQNEPLRVNVLFKHIQDMLS--GDTAVIAETGDSWFNCQKLRLPENCGYEFQMQYG 439
+A EP+ + + + D + G + A+ GD F + ++ G Y
Sbjct: 350 ---QADAEPIAPMDIARAVNDRFARHGQMPLAADIGDCLFTAMDM---DDAGLMAPGYYA 403
Query: 440 SIGWSVGATLGYAQAAKDKRVIACIGDGSFQVTAQEISTMIRCGQRSIIFLINNGGY-TI 498
+G+ V A +G AQ KR++ +GDG+FQ+T E+ R G I+ L NN + +
Sbjct: 404 GMGFGVPAGIG-AQCTSGKRILTLVGDGAFQMTGWELGNCRRLGIDPIVILFNNASWEML 462
Query: 499 EVEIHDGPYNVIKNWDYTGLVNAIHNGEGKCWTAKVRSEDELTEAMKTATGEQKDSLCFI 558
V + +N + +W + + + G+G +VR+ EL A+ A + I
Sbjct: 463 RVFQPESAFNDLDDWRFADMAAGM-GGDGV----RVRTRAELAAALDKAF-ATRGRFQLI 516
Query: 559 EVFVHKDDTSKEL 571
E + + S L
Sbjct: 517 EAMLPRGVLSDTL 529
>gnl|CDD|217224 pfam02776, TPP_enzyme_N, Thiamine pyrophosphate enzyme, N-terminal
TPP binding domain.
Length = 172
Score = 134 bits (340), Expect = 7e-37
Identities = 55/165 (33%), Positives = 77/165 (46%), Gaps = 9/165 (5%)
Query: 28 TLGRHLARRLVEIGAKDVFSVPGDFNLTLLDHLIAEPELNLVGCCNELNAGYAADGYAR- 86
T LA L +G VF VPG L LLD L P + V +E AG+AADGYAR
Sbjct: 2 TGADALAEALKALGVDHVFGVPGSSILPLLDALAKSPGIRYVLTRHEQGAGFAADGYARA 61
Query: 87 SRGVGACVVTFTVGGLSVLNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFT 146
+ G +VT G + L +A AY + +PV+ I G ++D G GL +
Sbjct: 62 TGKPGVVLVTSGPGATNALTGLANAYVDGIPVLVISGQVPTSDLGRG-------GLQEEL 114
Query: 147 QELRCFQAITCSQAVVNNLGDAHELIDTAISTALKESK-PVYISI 190
+L F+ +T V + + E +D A AL PVY+ +
Sbjct: 115 DQLALFRPVTKWAERVTSPDEIPEALDRAFRAALSGRPGPVYLEL 159
>gnl|CDD|132915 cd06586, TPP_enzyme_PYR, Pyrimidine (PYR) binding domain of
thiamine pyrophosphate (TPP)-dependent enzymes.
Thiamine pyrophosphate (TPP) family, pyrimidine (PYR)
binding domain; found in many key metabolic enzymes
which use TPP (also known as thiamine diphosphate) as a
cofactor. TPP binds in the cleft formed by a PYR domain
and a PP domain. The PYR domain, binds the
aminopyrimidine ring of TPP, the PP domain binds the
diphosphate residue. A polar interaction between the
conserved glutamate of the PYR domain and the N1' of the
TPP aminopyrimidine ring is shared by most TPP-dependent
enzymes, and participates in the activation of TPP. The
PYR and PP domains have a common fold, but do not share
strong sequence conservation. The PP domain is not
included in this group. Most TPP-dependent enzymes have
the PYR and PP domains on the same subunit although
these domains can be alternatively arranged in the
primary structure. In the case of 2-oxoisovalerate
dehydrogenase (2OXO), sulfopyruvate decarboxylase
(ComDE), and the E1 component of human pyruvate
dehydrogenase complex (E1- PDHc) the PYR and PP domains
appear on different subunits. TPP-dependent enzymes are
multisubunit proteins, the smallest catalytic unit being
a dimer-of-active sites. For many of these enzymes the
active sites lie between PP and PYR domains on different
subunits. However, for the homodimeric enzymes
1-deoxy-D-xylulose 5-phosphate synthase (DXS) and
Desulfovibrio africanus pyruvate:ferredoxin
oxidoreductase (PFOR), each active site lies at the
interface of the PYR and PP domains from the same
subunit.
Length = 154
Score = 111 bits (280), Expect = 9e-29
Identities = 44/160 (27%), Positives = 69/160 (43%), Gaps = 8/160 (5%)
Query: 33 LARRLVEIGAKDVFSVPGDFNLTLLDHLIAEPELNLVGCCNELNAGYAADGYARSRGVGA 92
A L G + VF PGD +LLD L + + +EL A AA GYAR+ G
Sbjct: 3 FAEVLTAWGVRHVFGYPGDEISSLLDALREGDKRIIDTVIHELGAAGAAAGYARAGGPPV 62
Query: 93 CVVTFTVGGLSVLNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCF 152
+VT G L+ +N +A A +E+LPV+ ++G + +L +
Sbjct: 63 VIVTSGTGLLNAINGLADAAAEHLPVVFLIGARGISAQAK--------QTFQSMFDLGMY 114
Query: 153 QAITCSQAVVNNLGDAHELIDTAISTALKESKPVYISISC 192
++I + + + ID AI TA PV + +
Sbjct: 115 RSIPEANISSPSPAELPAGIDHAIRTAYASQGPVVVRLPR 154
>gnl|CDD|132918 cd07035, TPP_PYR_POX_like, Pyrimidine (PYR) binding domain of POX
and related proteins. Thiamine pyrophosphate (TPP
family), pyrimidine (PYR) binding domain of pyruvate
oxidase (POX) and related protiens subfamily. The PYR
domain is found in many key metabolic enzymes which use
TPP (also known as thiamine diphosphate) as a cofactor.
TPP binds in the cleft formed by a PYR domain and a PP
domain. The PYR domain, binds the aminopyrimidine ring
of TPP, the PP domain binds the diphosphate residue. A
polar interaction between the conserved glutamate of the
PYR domain and the N1' of the TPP aminopyrimidine ring
is shared by most TPP-dependent enzymes, and
participates in the activation of TPP. For glyoxylate
carboligase, which belongs to this subfamily, but lacks
this conserved glutamate, the rate of the initial TPP
activation step is reduced but the ensuing steps of the
enzymic reaction proceed efficiently. The PYR and PP
domains have a common fold, but do not share strong
sequence conservation. The PP domain is not included in
this sub-family. Most TPP-dependent enzymes have the PYR
and PP domains on the same subunit although these
domains can be alternatively arranged in the primary
structure. TPP-dependent enzymes are multisubunit
proteins, the smallest catalytic unit being a
dimer-of-active sites, for many the active sites lie
between PP and PYR domains on different subunits. POX
decarboxylates pyruvate, producing hydrogen peroxide and
the energy-storage metabolite acetylphosphate. This
subfamily includes pyruvate decarboxylase (PDC) and
indolepyruvate decarboxylase (IPDC). PDC catalyzes the
conversion of pyruvate to acetaldehyde and CO2 in
alcoholic fermentation. IPDC plays a role in the
indole-3-pyruvic acid (IPA) pathway in plants and
various plant-associated bacteria, it catalyzes the
decarboxylation of IPA to IAA. This subfamily also
includes the large catalytic subunit of acetohydroxyacid
synthase (AHAS). AHAS catalyzes the condensation of two
molecules of pyruvate to give the acetohydroxyacid,
2-acetolactate, a precursor of the branched chain amino
acids, valine and leucine. AHAS also catalyzes the
condensation of pyruvate and 2-ketobutyrate to form
2-aceto-2-hydroxybutyrate in isoleucine biosynthesis.
Methanococcus jannaschii sulfopyruvate decarboxylase
(MjComDE) and phosphonopyruvate decarboxylase (PpyrDc)
also belong to this subfamily. PpyrDc is a homotrimeric
enzyme having the PP and PYR domains tandemly arranged
on the same subunit. It functions in the biosynthesis of
C-P compounds such as bialaphos tripeptide in
Streptomyces hygroscopicus. MjComDE is a dodecamer
having the PYR and PP domains on different subunits, it
has six alpha (PYR/ComD) subunits and six beta (PP/ComE)
subunits. MjComDE catalyzes the decarboxylation of
sulfopyruvic acid to sulfoacetaldehyde in the coenzyme M
pathway.
Length = 155
Score = 107 bits (269), Expect = 3e-27
Identities = 44/160 (27%), Positives = 66/160 (41%), Gaps = 11/160 (6%)
Query: 33 LARRLVEIGAKDVFSVPGDFNLTLLDHLIAEPELNLVGCCNELNAGYAADGYAR-SRGVG 91
L L G VF VPG L LLD L A + + +E A ADGYAR + G
Sbjct: 3 LVEALKAEGVDHVFGVPGGAILPLLDAL-ARSGIRYILVRHEQGAVGMADGYARATGKPG 61
Query: 92 ACVVTFTVGGLSVLNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQELRC 151
+VT G + + +A AY +++P++ I G + G + Q +
Sbjct: 62 VVLVTSGPGLTNAVTGLANAYLDSIPLLVITGQRPTAGEGRGA-------FQEIDQ-VAL 113
Query: 152 FQAITCSQAVVNNLGDAHELIDTAISTALKESK-PVYISI 190
F+ IT V + + E + A AL PV + +
Sbjct: 114 FRPITKWAYRVTSPEEIPEALRRAFRIALSGRPGPVALDL 153
>gnl|CDD|226471 COG3962, COG3962, Acetolactate synthase [Amino acid transport and
metabolism].
Length = 617
Score = 103 bits (258), Expect = 4e-23
Identities = 128/596 (21%), Positives = 222/596 (37%), Gaps = 98/596 (16%)
Query: 29 LGRHLARRLVEIGAKD-----VFSVPGDFNLTLLDH-LIAEPE-LNLVGCCNELNAGYAA 81
L R LA+++ EIG VF++ G N+ + L + L NE +AA
Sbjct: 13 LVRFLAQQMTEIGEIVPFVGGVFAIFGHGNVAGIGEALYQVRDHLPTYQGHNEQGMAHAA 72
Query: 82 DGYA---RSRGVGACVVTFTVGGLSVLNAIAGAYSENLPVICIVGGPNSNDYGTNRILHH 138
YA R R + A + G +++ A A A+ LPV+ + G D R
Sbjct: 73 IAYAKQHRRRRIYAVTSSIGPGAANMVTAAALAHVNRLPVLLLPG-----DVFATRQ--- 124
Query: 139 TIGLPD-FTQELRCFQAIT-----CSQAV---VNNLGDAHELIDTAIS-----TALKESK 184
PD Q+L F T C + V + + +L+ T +
Sbjct: 125 ----PDPVLQQLEQFGDGTITTNDCFRPVSRYFDRITRPEQLMSALPRAMRVMTDPADCG 180
Query: 185 PVYISISCNLPGIPHPTFARD-PVPFFLAPKV---SNQLGLEAAVEATADFLNKAVKPVL 240
PV +++ ++ A D P FF +V E + A + A KP++
Sbjct: 181 PVTLALCQDVQA-----EAYDYPESFF-EKRVWRIRRPPPDERELADAAALIKSAKKPLI 234
Query: 241 VGGPNIRVAKAQKAFIELADATGYPIAIMPSGKGLVPEHHPHFIGTYWGAVSSSFCGEIV 300
V G + + A++A A+ G P+ +GK + HP +G G +
Sbjct: 235 VAGGGVLYSGAREALRAFAETHGIPVVETQAGKSALAWDHPLNLGGV-GVTGTLAANRAA 293
Query: 301 ESADAYVFVGPIFNDYSSVGYSLLIKKEKAII---VQPHRVTVGNGPSLGWVFMADFLSA 357
E AD + +G D+++ +L + VQP + L +AD +
Sbjct: 294 EEADLVIGIGTRLQDFTTGSKALFKNPGVKFLNLNVQPFDAYKHDALPL----VADARAG 349
Query: 358 LAKKLRKNTTALENYR-----------------RIYVPPGIPVKRAQNEPLRVNVLFKHI 400
L + AL YR P P + V+ +
Sbjct: 350 LEAL----SEALGGYRTAAGWTDERERLKAAWDAEADAPTAKNHFLNTLPTQTQVIGA-V 404
Query: 401 QDMLSGDTAVIAETGDSWFNCQKL---RLPENCGYEFQMQYGSIGWSVGATLGYAQAAKD 457
Q +S D+ V+ G + KL +P Y + + +G+ + LG A+AA+
Sbjct: 405 QRTISDDSVVVCAAGSLPGDLHKLWRAGVPG--TYHLEYGFSCMGYEIAGGLG-AKAAEP 461
Query: 458 KR-VIACIGDGSFQVTAQEISTMIRCGQRSIIFLINNGGY----TIEVEIHDGPYNVIKN 512
R V +GDGS+ + E++T + G++ I+ L++N GY +++ +N N
Sbjct: 462 DREVYVMVGDGSYMMLNSELATSVMLGKKIIVVLLDNRGYGCINRLQMATGGASFN---N 518
Query: 513 W--DYTGLVNAIH-----NGEG-KCWTAKVRSEDELTEAMKTATGEQKDSLCFIEV 560
D + + E KV + +EL A+ A + ++ I+
Sbjct: 519 LLRDTDHEEEILQVDFAAHAESYGAKAYKVGTIEELEAALADAKASDRTTVIVIDT 574
>gnl|CDD|232833 TIGR00118, acolac_lg, acetolactate synthase, large subunit,
biosynthetic type. Two groups of proteins form
acetolactate from two molecules of pyruvate. The type of
acetolactate synthase described in this model also
catalyzes the formation of acetohydroxybutyrate from
pyruvate and 2-oxobutyrate, an early step in the
branched chain amino acid biosynthesis; it is therefore
also termed acetohydroxyacid synthase. In bacteria, this
catalytic chain is associated with a smaller regulatory
chain in an alpha2/beta2 heterotetramer. Acetolactate
synthase is a thiamine pyrophosphate enzyme. In this
type, FAD and Mg++ are also found. Several isozymes of
this enzyme are found in E. coli K12, one of which
contains a frameshift in the large subunit gene and is
not expressed [Amino acid biosynthesis, Pyruvate
family].
Length = 558
Score = 99.4 bits (248), Expect = 6e-22
Identities = 129/575 (22%), Positives = 224/575 (38%), Gaps = 83/575 (14%)
Query: 33 LARRLVEIGAKDVFSVPGDFNLTLLDHLIAEPELNLVGCCNELNAGYAADGYARSRG-VG 91
+ L + G K VF PG L + D L + + + +E A +AADGYAR+ G VG
Sbjct: 7 IIESLKDEGVKTVFGYPGGAILPIYDALYNDSGIEHILVRHEQGAAHAADGYARASGKVG 66
Query: 92 ACVVTFTVGGLSVLNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQE--- 148
+VT G +++ IA AY +++P++ G ++ IG F QE
Sbjct: 67 VVLVTSGPGATNLVTGIATAYMDSIPMVVFTG----------QVPTSLIGSDAF-QEADI 115
Query: 149 LRCFQAITCSQAVVNNLGDAHELIDTAISTALK-ESKPVYISI--SCNLPGIPHPTFARD 205
L IT V + D +I A A PV + + I +P +
Sbjct: 116 LGITMPITKHSFQVKSAEDIPRIIKEAFHIATTGRPGPVLVDLPKDVTTAEIEYPYPEKV 175
Query: 206 PVPFFLAPKVSNQLGLEAAVEATADFLNKAVKPVLVGGPNIRVAKAQKAFIELADATGYP 265
+P + P V G ++ A+ +N A KPV++ G + +A A + ELA+ P
Sbjct: 176 NLPGY-RPTV---KGHPLQIKKAAELINLAKKPVILVGGGVIIAGASEELKELAERIQIP 231
Query: 266 IAIMPSGKGLVPEHHPHFIGTYWGAVSSSFCGEIVESADAYVFVGPIFNDYSSVGYSLLI 325
+ G G PE HP +G G + V D + VG F+D + +
Sbjct: 232 VTTTLMGLGSFPEDHPLSLGML-GMHGTKTANLAVHECDLIIAVGARFDDRVTGNLAKFA 290
Query: 326 KKEKAI-----------IVQPHRVTVGNGPSLGWVFMADFLSALAKKLRKNTTA----LE 370
K I V+ VG+ ++ + + L L + + +A +
Sbjct: 291 PNAKIIHIDIDPAEIGKNVRVDIPIVGDARNV----LEELLKKLFELKERKESAWLEQIN 346
Query: 371 NYRRIYVPPGIPVKRAQNEPLRVNVLFKHIQDMLSGDTAVIAETGDS--W----FNCQKL 424
+++ Y P + E ++ + + + + + V + G W + +K
Sbjct: 347 KWKKEY-PLKMDYT---EEGIKPQQVIEELSRVTKDEAIVTTDVGQHQMWAAQFYPFRKP 402
Query: 425 RLPENCGYEFQMQYGSIGWSVGATLGYAQAAKDKRVIACIGDGSFQVTAQEISTMIRCGQ 484
R G G++G+ + A +G A + VI GDGSFQ+ QE+ST ++
Sbjct: 403 RRFITSG-----GLGTMGFGLPAAIGAKVAKPESTVICITGDGSFQMNLQELSTAVQYDI 457
Query: 485 RSIIFLINNGGYTIEVEIHDGPYNVIKNWD---YTGLVNAIHNGEGKCWTA--------- 532
I ++NN + G +++ W Y + H G +
Sbjct: 458 PVKILILNNR--------YLG---MVRQWQELFYEERYSHTHMGSLPDFVKLAEAYGIKG 506
Query: 533 -KVRSEDELTEAMKTATGEQKDSLCFIEVFVHKDD 566
++ +EL E +K A + ++V V K +
Sbjct: 507 IRIEKPEELDEKLKEAL--SSNEPVLLDVVVDKPE 539
>gnl|CDD|181502 PRK08611, PRK08611, pyruvate oxidase; Provisional.
Length = 576
Score = 95.5 bits (238), Expect = 1e-20
Identities = 130/573 (22%), Positives = 228/573 (39%), Gaps = 78/573 (13%)
Query: 28 TLGRHLARRLVEIGAKDVFSVPGDFNLTLLDHLIAEPE-LNLVGCCNELNAGYAADGYAR 86
G L + L + G V+ +PGD ++D L E + + + +E A AA YA+
Sbjct: 5 KAGEALVKLLQDWGIDHVYGIPGDSIDAVVDALRKEQDKIKFIQVRHEEVAALAAAAYAK 64
Query: 87 SRG-VGACVVTFTVGGLSVLNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDF 145
G +G C+ G + +LN + A +++PV+ + G S+ GT DF
Sbjct: 65 LTGKIGVCLSIGGPGAIHLLNGLYDAKMDHVPVLALAGQVTSDLLGT-----------DF 113
Query: 146 TQEL---RCFQAITCSQAVVNNLGDAHELIDTAISTALKESKPVYISISCNLPGIPHPTF 202
QE+ + F+ + + + + E+++ AI TA ++ ++I +LP
Sbjct: 114 FQEVNLEKMFEDVAVYNHQIMSAENLPEIVNQAIRTAYEKKGVAVLTIPDDLPAQKIKDT 173
Query: 203 ARDPVPFFLAPKVSNQLGLEAAVEATADFLNKAVKPVLVGGPNIRVAKAQ-KAFIELADA 261
V F S + ++ A +NKA KPV++ G + AK + AF E A
Sbjct: 174 TNKTVDTFRPTVPSPK---PKDIKKAAKLINKAKKPVILAGLGAKHAKEELLAFAEKAKI 230
Query: 262 TGYPIAIMPSGKGLVPEHHPHFIGTYWGAVSSSFCGEIVESADAYVFVGPIFNDYSSVGY 321
PI KG++P+ HP+ +G G + + E ++ AD + VG +Y V Y
Sbjct: 231 ---PIIHTLPAKGIIPDDHPYSLGNL-GKIGTKPAYEAMQEADLLIMVG---TNYPYVDY 283
Query: 322 SLLIKKEKAIIV--QP----HR--VTVG-NGPSLGWVFMADFLSALAKK---------LR 363
L KK KAI + P R V VG G + L L + L
Sbjct: 284 --LPKKAKAIQIDTDPANIGKRYPVNVGLVGDA------KKALHQLTENIKHVEDRRFLE 335
Query: 364 KNTTALENYRRIYVPPGIPVKRAQ-NEPLRVNVLFKHIQDMLSGDTAVIAETGDS--WFN 420
+ + + + + P++ + IQ + D + + G W +
Sbjct: 336 ACQENMAKWWK-----WMEEDENNASTPIKPERVMAAIQKIADDDAVLSVDVGTVTVW-S 389
Query: 421 CQKLRLPENCGYEFQMQYGSIGWSVGATLGYAQAAKDKRVIACIGDGSFQVTAQEISTMI 480
+ L L N + G++G + + A D++ IA GDG F + Q+ T +
Sbjct: 390 ARYLNLGTNQKFIISSWLGTMGCGLPGAIAAKIAFPDRQAIAICGDGGFSMVMQDFVTAV 449
Query: 481 RCGQRSIIFLINNGGYT-IEVEIHDGPYNVIKNWDY-TGLVNAIH-----NGEGKCWTAK 533
+ ++ ++NN I+ E +Y L + + GK +
Sbjct: 450 KYKLPIVVVVLNNQQLAFIKYE-----QQAAGELEYAIDLSDMDYAKFAEACGGKGYR-- 502
Query: 534 VRSEDELTEAMKTATGEQKDSLCFIEVFVHKDD 566
V +EL A + A + K I+V+V +
Sbjct: 503 VEKAEELDPAFEEALAQDKP--VIIDVYVDPNA 533
>gnl|CDD|215786 pfam00205, TPP_enzyme_M, Thiamine pyrophosphate enzyme, central
domain. The central domain of TPP enzymes contains a
2-fold Rossman fold.
Length = 136
Score = 87.6 bits (218), Expect = 1e-20
Identities = 31/118 (26%), Positives = 52/118 (44%), Gaps = 1/118 (0%)
Query: 225 VEATADFLNKAVKPVLVGGPNIRVAKAQKAFIELADATGYPIAIMPSGKGLVPEHHPHFI 284
++ A+ L A +PV++ G +R + A + LA+ G P+ GKG PE HP ++
Sbjct: 1 IDKAAELLASAKRPVILAGGGVRRSGASEELRALAEKLGIPVVTTLMGKGAFPEDHPLYL 60
Query: 285 GTYWGAVSSSFCGEIVESADAYVFVGPIFNDYSSVGYSLLIKKEKAIIVQPHRVTVGN 342
G G + E +E AD + +G F+D + K I + +G
Sbjct: 61 G-MLGMHGTPAANEALEEADLVLAIGARFDDRGTGSLPEFAPDAKIIHIDIDPAEIGK 117
>gnl|CDD|235700 PRK06112, PRK06112, acetolactate synthase catalytic subunit;
Validated.
Length = 578
Score = 95.2 bits (237), Expect = 2e-20
Identities = 155/596 (26%), Positives = 222/596 (37%), Gaps = 90/596 (15%)
Query: 15 SAPAPVRGGASVGTLGRHLARRLVEIGAKDVF--SVPGDFNLTLLDHLIAEPELNL--VG 70
S P G GT+ +AR L G + +F S+P L A + + +
Sbjct: 2 SKPLSAPGFTLNGTVAHAIARALKRHGVEQIFGQSLPSALFL-------AAEAIGIRQIA 54
Query: 71 CCNELNAGYAADGYAR-SRGVGACVVTFTVGGLSVL--NAIAGAYSENLPVICIVGGPNS 127
E G ADGYAR S V VVT G + L +A A ++P++ +V N
Sbjct: 55 YRTENAGGAMADGYARVSGKVA--VVTAQNGPAATLLVAPLAEALKASVPIVALVQDVNR 112
Query: 128 NDYGTNRI--LHHTIGLPDFTQELRCFQAITCSQAVVNNLGDAHELIDTAISTALK-ESK 184
+ N L H I L FQ+ T V + +D A + A
Sbjct: 113 DQTDRNAFQELDH-IAL---------FQSCTKWVRRVTVAERIDDYVDQAFTAATSGRPG 162
Query: 185 PVYISISCNLPGIPHPTFARDPVPFFLAPKVSNQLG---------LEAAVEATADFLNKA 235
PV + + +L A P A SN LG + A L +A
Sbjct: 163 PVVLLLPADL------LTAAAAAP---AAPRSNSLGHFPLDRTVPAPQRLAEAASLLAQA 213
Query: 236 VKPVLVGGPNIRVAKAQKAFIELADATGYPIAIMPSGKGLVPEHHPHFIGTYWGAV---- 291
+PV+V G + ++ A A L G P+A GKG V E HP +G +
Sbjct: 214 QRPVVVAGGGVHISGASAALAALQSLAGLPVATTNMGKGAVDETHPLSLGVVGSLMGPRS 273
Query: 292 SSSFCGEIVESADAYVFVGPIFNDYSSVGYSLLIKKEKAIIVQPHRVTVG-NGPSLGWVF 350
++V AD + VG N + +SL ++ + I + VG N +L V
Sbjct: 274 PGRHLRDLVREADVVLLVGTRTNQNGTDSWSLYPEQAQYIHIDVDGEEVGRNYEALRLVG 333
Query: 351 MADF-LSALAKKLRKNTTALENYRRIYVPPGI------------PVKRAQNEPLRVNVLF 397
A L+AL LR A RR + P I PV + P+R +
Sbjct: 334 DARLTLAALTDALRGRDLAARAGRRAALEPAIAAGREAHREDSAPVALSDASPIRPERIM 393
Query: 398 KHIQDMLSGDTAVIAETGDS--WFNCQKLRLPENCGYEFQMQYG--SIGWSVGATLGYAQ 453
+Q +L+GDT V+A+ S W L G F G +GW V +G
Sbjct: 394 AELQAVLTGDTIVVADASYSSIWV-ANFLTARRA-GMRFLTPRGLAGLGWGVPMAIGAKV 451
Query: 454 AAKDKRVIACIGDGSFQVTAQEISTMIRCGQRSIIFLINNG--GYTIEVEIHDGPYNVIK 511
A VI +GDG F E+ T R G I ++NNG G+ E +K
Sbjct: 452 ARPGAPVICLVGDGGFAHVWAELETARRMGVPVTIVVLNNGILGFQKHAE-------TVK 504
Query: 512 NWDYTGLVN-------AIHNGEGKCWTAKVRSEDELTEAMKTATGEQKDSLCFIEV 560
+T + AI G C +V EL +A+ A +L IEV
Sbjct: 505 FGTHTDACHFAAVDHAAIARACG-CDGVRVEDPAELAQALAAAMAAPGPTL--IEV 557
>gnl|CDD|181337 PRK08266, PRK08266, hypothetical protein; Provisional.
Length = 542
Score = 94.7 bits (236), Expect = 2e-20
Identities = 83/271 (30%), Positives = 116/271 (42%), Gaps = 28/271 (10%)
Query: 28 TLGRHLARRLVEIGAKDVFSVPGDFNLTLLDHL-IAEPELNLVGCCNELNAGYAADGYAR 86
T G + LV G VF +PG L D L A + ++ +E AGY A GYAR
Sbjct: 5 TGGEAIVAGLVAHGVDTVFGLPGAQLYWLFDALYKAGDRIRVIHTRHEQAAGYMAFGYAR 64
Query: 87 SRG-VGACVVTFTVGGLSVLNAIAG---AYSENLPVICIVGGPNSNDYGTNR-ILHHTIG 141
S G G C V V G VLNA A AY N PV+C+ G S G R LH
Sbjct: 65 STGRPGVCSV---VPGPGVLNAGAALLTAYGCNSPVLCLTGQIPSALIGKGRGHLHE--- 118
Query: 142 LPDFTQELRCFQAITCSQAVVNNLGDAHELIDTAISTALK-ESKPVYISISCNLPGIPHP 200
+PD +L ++ T + + +A L+ A L +PV + + ++ G P
Sbjct: 119 MPD---QLATLRSFTKWAERIEHPSEAPALVAEAFQQMLSGRPRPVALEMPWDVFGQRAP 175
Query: 201 TFARDPVPFFLAPKVSNQLGLEAAVEATADFLNKAVKPVL-VGGPNIRVAKAQKAFIELA 259
A P+ P A+ A A + A P++ VGG A A + ELA
Sbjct: 176 VAAAPPLRPAPPPAPD-----PDAIAAAAALIAAAKNPMIFVGGG---AAGAGEEIRELA 227
Query: 260 DATGYPIAIMPSGKGLVPEHHP---HFIGTY 287
+ P+ SG+G+V + HP +F Y
Sbjct: 228 EMLQAPVVAFRSGRGIVSDRHPLGLNFAAAY 258
Score = 50.8 bits (122), Expect = 1e-06
Identities = 34/143 (23%), Positives = 57/143 (39%), Gaps = 18/143 (12%)
Query: 430 CGYEFQMQYGSIGWSVGATLGYAQAAKDKRVIACIGDGSFQVTAQEISTMIRCGQRSIIF 489
CGY+ G++G+ LG A D+ V++ GDG F QE++T ++ +
Sbjct: 398 CGYQ-----GTLGYGFPTALGAKVANPDRPVVSITGDGGFMFGVQELATAVQHNIGVVTV 452
Query: 490 LINNGGY----TIEVEIHDGPY--NVIKNWDYTGLVNAIHNGEGKCWTAKVRSEDELTEA 543
+ NN Y + G + + N D+ L + +V S +EL A
Sbjct: 453 VFNNNAYGNVRRDQKRRFGGRVVASDLVNPDFVKLAESFGVA-----AFRVDSPEELRAA 507
Query: 544 MKTATGEQKDSLCFIEVFVHKDD 566
++ A IEV V +
Sbjct: 508 LEAAL--AHGGPVLIEVPVPRGS 528
>gnl|CDD|132497 TIGR03457, sulphoacet_xsc, sulfoacetaldehyde acetyltransferase.
Members of this protein family are sulfoacetaldehyde
acetyltransferase, an enzyme of taurine utilization.
Taurine, or 2-aminoethanesulfonate, can be used by
bacteria as a source of carbon, nitrogen, and sulfur
[Central intermediary metabolism, Other].
Length = 579
Score = 94.2 bits (234), Expect = 3e-20
Identities = 108/494 (21%), Positives = 192/494 (38%), Gaps = 82/494 (16%)
Query: 37 LVEIGAKDVFSVPGDFNLTLLDHLIAEPELNLVGCCNELNAGYAADGYARSRGVGACVVT 96
LV G F + G + +D L + + +E AG+ ADG+AR G + V+
Sbjct: 12 LVANGVTHAFGIMGSAFMDAMD-LFPPAGIRFIPVVHEQGAGHMADGFARVTGRMSMVIG 70
Query: 97 FTVGGLS-VLNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQ--ELRCFQ 153
G++ + AIA AY + PV+ + P + GT TIGL F + +L FQ
Sbjct: 71 QNGPGVTNCVTAIAAAYWAHTPVVIV--TPEA---GTK-----TIGLGGFQEADQLPMFQ 120
Query: 154 AITCSQAVVNNLGDAHELIDTAISTALKESKPVYISISCNL------PGIPHPT-FARDP 206
T Q V + E+++ A +E P ++I + IP P R
Sbjct: 121 EFTKYQGHVRHPSRMAEVLNRCFERAWREMGPAQLNIPRDYFYGEIDVEIPRPVRLDRGA 180
Query: 207 VPFFLAPKVSNQLGLEAAVEATADFLNKAVKPVLVGGPNIRVAKAQKAFIELADATGYPI 266
G ++ A L +A PV++ G + + A + LA+ G P+
Sbjct: 181 -------------GGATSLAQAARLLAEAKFPVIISGGGVVMGDAVEECKALAERLGAPV 227
Query: 267 AIMPSGKGLVPEHHPHFIGT--YWGAVSSSFCGEIVESADAYVFVGPIFNDYSSV-GYSL 323
P HP ++G Y G+ ++ +++ AD + +G + ++ Y +
Sbjct: 228 VNSYLHNDSFPASHPLWVGPLGYQGSKAAM---KLISDADVVLALGTRLGPFGTLPQYGI 284
Query: 324 LIKKEKAIIVQ----------PHRVTVGN---------------GPSLGWVFMADFLSAL 358
+ A I+Q +VTVG G A+ + +
Sbjct: 285 DYWPKNAKIIQVDANAKMIGLVKKVTVGICGDAKAAAAEILQRLAGKAGDANRAERKAKI 344
Query: 359 AKKLRKNTTALENYRRIYVPPGIP--VKRAQNEPLRVN---VLFKHIQD------MLSGD 407
+ L P + V++ Q E ++ VL + ++ ++S D
Sbjct: 345 QAERSAWEQELSEMTHERDPFSLDMIVEQRQEEGNWLHPRQVLRE-LEKAMPEDAIVSTD 403
Query: 408 TAVIAETGDSWFNCQKLRLPENCGYEFQMQYGSIGWSVGATLGYAQAAKDKRVIACIGDG 467
I +S+ +K R + M +G+ G++ +G AA D+ V+A GDG
Sbjct: 404 IGNINSVANSYLRFEKPR-----KFLAPMSFGNCGYAFPTIIGAKIAAPDRPVVAYAGDG 458
Query: 468 SFQVTAQEISTMIR 481
++ ++ EI T +R
Sbjct: 459 AWGMSMNEIMTAVR 472
>gnl|CDD|238318 cd00568, TPP_enzymes, Thiamine pyrophosphate (TPP) enzyme family,
TPP-binding module; found in many key metabolic enzymes
which use TPP (also known as thiamine diphosphate) as a
cofactor. These enzymes include, among others, the E1
components of the pyruvate, the acetoin and the branched
chain alpha-keto acid dehydrogenase complexes.
Length = 168
Score = 83.8 bits (208), Expect = 8e-19
Identities = 45/175 (25%), Positives = 74/175 (42%), Gaps = 16/175 (9%)
Query: 396 LFKHIQDMLSGDTAVIAETGDS--WFNCQKLRLPENCGYEFQMQYGSIGWSVGATLGYAQ 453
+ ++ L D V+ + G+S W + L L + +G++G+ + A +G A
Sbjct: 2 VLAALRAALPEDAIVVNDAGNSAYWAY-RYLPLRRGRRFLTSTGFGAMGYGLPAAIGAAL 60
Query: 454 AAKDKRVIACIGDGSFQVTAQEISTMIRCGQRSIIFLINNGGYTIEVEIHDGPYNV---- 509
AA D+ V+ GDG F +T QE++T +R G I+ + NNGGY + Y
Sbjct: 61 AAPDRPVVCIAGDGGFMMTGQELATAVRYGLPVIVVVFNNGGYGTIRMHQEAFYGGRVSG 120
Query: 510 --IKNWDYTGLVNAIHNGEGKCWTAKVRSEDELTEAMKTATGEQKDSLCFIEVFV 562
+ N D+ L A +V ++L A+ A IEV
Sbjct: 121 TDLSNPDFAALAEAYG-----AKGVRVEDPEDLEAALAEA--LAAGGPALIEVKT 168
>gnl|CDD|235766 PRK06276, PRK06276, acetolactate synthase catalytic subunit;
Reviewed.
Length = 586
Score = 88.3 bits (219), Expect = 3e-18
Identities = 123/495 (24%), Positives = 210/495 (42%), Gaps = 56/495 (11%)
Query: 30 GRHLARRLVEIGAKDVFSVPGDFNLTLLDHLIAEPELNLVGCCNELNAGYAADGYARSRG 89
+ + L G K +F PG L D L +L + +E A +AADGYAR+ G
Sbjct: 4 AEAIIKALEAEGVKIIFGYPGGALLPFYDALYDS-DLIHILTRHEQAAAHAADGYARASG 62
Query: 90 -VGACVVTFTVGGLSVLNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQE 148
VG CV T G +++ IA AY+++ PVI + G ++ IG F QE
Sbjct: 63 KVGVCVATSGPGATNLVTGIATAYADSSPVIALTG----------QVPTKLIGNDAF-QE 111
Query: 149 ---LRCFQAITCSQAVVNNLGDAHELIDTAISTALK-ESKPVYISI-----SCNLPGIPH 199
L F IT + + E+ A A PV+I + L +
Sbjct: 112 IDALGIFMPITKHNFQIKKPEEIPEIFRAAFEIAKTGRPGPVHIDLPKDVQEGELDLEKY 171
Query: 200 PTFARDPVPFFLAPKVSNQLGLEAAVEATADFLNKAVKPVLVGGPNIRVAKAQKAFIELA 259
P A+ +P + + L ++ A A+ + +A +PV++ G + ++ A + IEL+
Sbjct: 172 PIPAKIDLPGYKPTTFGHPLQIKKA----AELIAEAERPVILAGGGVIISGASEELIELS 227
Query: 260 DATGYPIAIMPSGKGLVPEHHPHFIGT--YWGAVSSSFCGEIVESADAYVFVGPIFNDYS 317
+ P+ GKG PE HP +G G ++++ V +D + +G F+D +
Sbjct: 228 ELVKIPVCTTLMGKGAFPEDHPLALGMVGMHGTKAANYS---VTESDVLIAIGCRFSDRT 284
Query: 318 SVGYSLLIKKEKAIIVQPHRVTVGNG-----PSLG--WVFMADFLSALAKKLRKNTTA-L 369
+ S K I + +G P +G + D L+ L KK KN + L
Sbjct: 285 TGDISSFAPNAKIIHIDIDPAEIGKNVRVDVPIVGDAKNVLRDLLAELMKKEIKNKSEWL 344
Query: 370 ENYRRIYVPPGIPVKRAQNEPLRVNVLFKHIQDMLSG-----DTAVIAETGDS--W---- 418
E +++ IP ++P++ + K + ++L +T + + G + W
Sbjct: 345 ERVKKLK-KESIPRMDFDDKPIKPQRVIKELMEVLREIDPSKNTIITTDVGQNQMWMAHF 403
Query: 419 FNCQKLRLPENCGYEFQMQYGSIGWSVGATLGYAQAAKDKRVIACIGDGSFQVTAQEIST 478
F R + G G++G+ A +G A D VIA GDG F + +QE++T
Sbjct: 404 FKTSAPRSFISSG-----GLGTMGFGFPAAIGAKVAKPDANVIAITGDGGFLMNSQELAT 458
Query: 479 MIRCGQRSIIFLINN 493
+ +I + +N
Sbjct: 459 IAEYDIPVVICIFDN 473
>gnl|CDD|235718 PRK06154, PRK06154, hypothetical protein; Provisional.
Length = 565
Score = 87.2 bits (216), Expect = 5e-18
Identities = 109/518 (21%), Positives = 182/518 (35%), Gaps = 63/518 (12%)
Query: 81 ADGYARS---RGVGACVVTFTVGGLSVLNAIAGAYSENLPVICIVGGPNSNDYGTNRILH 137
ADGYAR+ VG V + G + +A AY +++PV+ + G R
Sbjct: 70 ADGYARATSGERVGVFAVQYGPGAENAFGGVAQAYGDSVPVLFLPTG-------YPRGST 122
Query: 138 HTIGLPDFTQELRCFQAITCSQAVVNNLGDAHELIDTAISTALKES-KPVYISISCNLPG 196
P+F + LR ++ IT V + EL+ A + PV + + ++
Sbjct: 123 DV--APNF-ESLRNYRHITKWCEQVTLPDEVPELMRRAFTRLRNGRPGPVVLELPVDVLA 179
Query: 197 IPHPTFARDPVPFFLAPKVSNQLGLEAAVEATADFLNKAVKPVLVGGPNIRVAKAQKAFI 256
D P + S V A L A +PV+ G + A+A
Sbjct: 180 EELDELPLDHRP----SRRSRPGADPVEVVEAAALLLAAERPVIYAGQGVLYAQATPELK 235
Query: 257 ELADATGYPIAIMPSGKGLVPEHHPHFIGT---YWGAVSSSFCGEIVESADAYVFVGPIF 313
ELA+ P+ +GK PE HP +G+ A + F + AD +G
Sbjct: 236 ELAELLEIPVMTTLNGKSAFPEDHPLALGSGGRARPATVAHF----LREADVLFGIGCSL 291
Query: 314 NDYSSVGYSLLIKKEKAII---VQPHRVTVGNGPSLGWVFMADF-LSALAKKLRKNTTA- 368
Y L + + K II + + G V A L + ++LR+
Sbjct: 292 TRSY---YGLPMPEGKTIIHSTLDDADLNKDYPIDHGLVGDAALVLKQMIEELRRRVGPD 348
Query: 369 ----------LENYRRIYVPPGIPVKRAQNEPLRVNVLFKHIQDMLSGDTAVIAETGDSW 418
+E R ++ +P + + P+ + +Q + T +I S
Sbjct: 349 RGRAQQVAAEIEAVRAAWLAKWMPKLTSDSTPINPYRVVWELQHAVDIKTVIITHDAGSP 408
Query: 419 --FNCQKLRLPENCGYEFQMQYGSIGW----SVGATLGYAQAAK----DKRVIACIGDGS 468
Y +GW +G LG A AK D VI GD +
Sbjct: 409 RDQLSPFYVASRPGSY--------LGWGKTTQLGYGLGLAMGAKLARPDALVINLWGDAA 460
Query: 469 FQVTAQEISTMIRCGQRSIIFLINNGGYTIEVEIHDGPYNVIKNWDYTGLVNAIHNGEGK 528
F +T + T +R + L+NN ++ + D +G AI G
Sbjct: 461 FGMTGMDFETAVRERIPILTILLNNFSMGGYDKVMPVSTTKYRATDISGDYAAIARALG- 519
Query: 529 CWTAKVRSEDELTEAMKTATGEQKDSL-CFIEVFVHKD 565
+ +V + L A+ A + K+ +EV ++
Sbjct: 520 GYGERVEDPEMLVPALLRALRKVKEGTPALLEVITSEE 557
>gnl|CDD|180569 PRK06456, PRK06456, acetolactate synthase catalytic subunit;
Reviewed.
Length = 572
Score = 87.2 bits (216), Expect = 5e-18
Identities = 114/485 (23%), Positives = 191/485 (39%), Gaps = 63/485 (12%)
Query: 31 RHLARRLVEIGAKDVFSVPGDFNLTLLDHLI---AEPELNLVGCCNELNAGYAADGYARS 87
R L L G K +F +PG N+ + D + A EL V +E A +AADGYAR+
Sbjct: 6 RILVDSLKREGVKVIFGIPGLSNMQIYDAFVEDLANGELRHVLMRHEQAAAHAADGYARA 65
Query: 88 RGV-GACVVTFTVGGLSVLNAIAGAYSENLPVICIVGGPNSNDYGTNRILH-HTIGLPDF 145
GV G C T G +++ + AY ++ PVI I G + G +G+
Sbjct: 66 SGVPGVCTATSGPGTTNLVTGLITAYWDSSPVIAITGQVPRSVMGKMAFQEADAMGV--- 122
Query: 146 TQELRCFQAITCSQAVVNNLGDAHELIDTAISTALK-ESKPVYISISCNLPGI------- 197
F+ +T + + + + I A A PV I I ++
Sbjct: 123 ------FENVTKYVIGIKRIDEIPQWIKNAFYIATTGRPGPVVIDIPRDIFYEKMEEIKW 176
Query: 198 PHPTFARDPVPFFLAPKVSNQLGLEAAVEATADFLNKAVKPVLVGGPNIRVAKAQKAFIE 257
P + F P ++L L+ A E L A +P+++ G + + A +E
Sbjct: 177 PEKPLVKGYRDF---PTRIDRLALKKAAE----ILINAERPIILVGTGVVWSNATPEVLE 229
Query: 258 LADATGYPIAIMPSGKGLVPEHHPHFIGT--YWGAVSSSFCGEIVESADAYVFVGPIFND 315
LA+ PI GK +P HP + G Y+G +S +ES DA + VG F+D
Sbjct: 230 LAELLHIPIVSTFPGKTAIPHDHPLYFGPMGYYGRAEASMAA--LES-DAMLVVGARFSD 286
Query: 316 YSSVGYSLLIKKEKAII---VQPHRVTVGNGPSLGWV-----FMADFLSALAKKLRKN-- 365
+ Y +++ K I + P +G + + + A+ + +K
Sbjct: 287 RTFTSYDEMVETRKKFIMVNIDPTDGEKAIKVDVGIYGNAKIILRELIKAITELGQKRDR 346
Query: 366 ---TTALENYRRIYVPPGIPVKRAQNEPLRVNVLFKHIQDMLSGDTAVIAETGDS----- 417
++ Y+ Y + + +P ++ K I+ L D V G
Sbjct: 347 SAWLKRVKEYKEYYSQFYYTEENGKLKPWKI---MKTIRQALPRDAIVTTGVGQHQMWAE 403
Query: 418 --WFNCQKLRLPENCGYEFQMQYGSIGWSVGATLGYAQAAKDKRVIACIGDGSFQVTAQE 475
W + + G G++G+ + A +G A DK V+ GDGSF +T
Sbjct: 404 VFWEVLEPRTFLTSSG------MGTMGFGLPAAMGAKLARPDKVVVDLDGDGSFLMTGTN 457
Query: 476 ISTMI 480
++T +
Sbjct: 458 LATAV 462
>gnl|CDD|180820 PRK07064, PRK07064, hypothetical protein; Provisional.
Length = 544
Score = 84.3 bits (209), Expect = 4e-17
Identities = 127/573 (22%), Positives = 212/573 (36%), Gaps = 85/573 (14%)
Query: 25 SVGTLGRHLARRLVEIGAKDVFSVPGDFNLTLLDHLIAEPELNLVGCCNELNAGYAADGY 84
T+G +A L + G K F V N+ +LD + ++ V E A AD +
Sbjct: 1 EKVTVGELIAAFLEQCGVKTAFGVISIHNMPILDAIGRRGKIRFVPARGEAGAVNMADAH 60
Query: 85 ARSRGVGACVVTFTVGGLSVLNAIAGAYSENL----PVICIVGGPNSNDYGTNR-ILHHT 139
AR G +T T G NA AGA E L P++ I G + + +H
Sbjct: 61 ARVSGGLGVALTST--GTGAGNA-AGALVEALTAGTPLLHITGQIETPYLDQDLGYIHEA 117
Query: 140 IGLPDFTQELRCFQAITCSQAV--VNNLGDAHELIDTAISTALKE-SKPVYISISCNLPG 196
PD LR S+A V + A I A+ AL + PV + I ++
Sbjct: 118 ---PDQLTMLR-----AVSKAAFRVRSAETALATIREAVRVALTAPTGPVSVEIPIDIQA 169
Query: 197 --IPHPTFARDPVPFFLAPKVSNQLGLEAAVEATADFLNKAVKPVL-VGGPNIRVAKAQK 253
I P P AAV A+ L A +P+L +GG A
Sbjct: 170 AEIELPDDLAPVHVAVPEPD-------AAAVAELAERLAAARRPLLWLGGG---ARHAGA 219
Query: 254 AFIELADATGYPIAIMPSGKGLVPEHHPHFIGTYWGAVSSSFCGEIVESADAYVFVGPIF 313
L D G+ + G+G+VPE HP +G + + + + ++ D + VG
Sbjct: 220 EVKRLVDL-GFGVVTSTQGRGVVPEDHPASLGAFNNSAAVE---ALYKTCDLLLVVGSRL 275
Query: 314 NDYSSVGYSLLIKKEKAIIVQPH-RVTVGNGPSLGWVFMAD---------FLSALAKKLR 363
++ YSL + +P RV + + G + D L+ LA +L
Sbjct: 276 RGNETLKYSLALP-------RPLIRVDA-DAAADGRGYPNDLFVHGDAARVLARLADRLE 327
Query: 364 KNTTALENYR---RIYVPPGIPVKRAQNEPLRVNVLFKHIQDMLSGDTAV---IAETGDS 417
+ + R + R P L ++ L D + + +
Sbjct: 328 GRLSVDPAFAADLRAAREAAVADLRKGLGPYA--KLVDALRAALPRDGNWVRDVTISNST 385
Query: 418 WFNCQKLRLPENCGYEFQMQYGSIGWSVGATL----GYAQAAKDKRVIACIGDGSFQVTA 473
W N + L + +E + ++G +G L G A A ++ + +GDG +
Sbjct: 386 WGN-RLLPI-----FEPRANVHALGGGIGQGLAMAIGAALAGPGRKTVGLVGDGGLMLNL 439
Query: 474 QEISTMIRCGQRSIIFLINNGGYTIEVEIHDGP------YNVIKNWDYTGLVNAIHNGEG 527
E++T ++ +I L+N+GGY + I D Y + D+ L ++
Sbjct: 440 GELATAVQENANMVIVLMNDGGYGVIRNIQDAQYGGRRYYVELHTPDFALLAASL----- 494
Query: 528 KCWTAKVRSEDELTEAMKTATGEQKDSLCFIEV 560
+V S D+ ++ A K+ +EV
Sbjct: 495 GLPHWRVTSADDFEAVLREALA--KEGPVLVEV 525
>gnl|CDD|180919 PRK07282, PRK07282, acetolactate synthase catalytic subunit;
Reviewed.
Length = 566
Score = 82.2 bits (203), Expect = 2e-16
Identities = 107/482 (22%), Positives = 193/482 (40%), Gaps = 54/482 (11%)
Query: 37 LVEIGAKDVFSVPGDFNLTLLDHLIAEPELNLVGCCNELNAGYAADGYARSRG-VGACVV 95
L ++G +F PG L L D + + + +E A + A+GYA+S G +G VV
Sbjct: 20 LRDLGVDTIFGYPGGAVLPLYDAIYNFEGIRHILARHEQGALHEAEGYAKSTGKLGVAVV 79
Query: 96 TFTVGGLSVLNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQE---LRCF 152
T G + + IA A S+++P++ G ++ IG F QE +
Sbjct: 80 TSGPGATNAITGIADAMSDSVPLLVFTG----------QVARAGIGKDAF-QEADIVGIT 128
Query: 153 QAITCSQAVVNNLGDAHELIDTAISTALK-ESKPVYISISCNLPGIPHPTFARDP---VP 208
IT + D +I A+ A PV I + ++ + F DP +P
Sbjct: 129 MPITKYNYQIRETADIPRIITEAVHIATTGRPGPVVIDLPKDVSAL-ETDFIYDPEVNLP 187
Query: 209 FFLAPKVSNQLGLEAAVEATADFLNKAVKPVLVGGPNIRVAKAQKAFIELADATGYPIAI 268
+ N + ++ ++ L+KA KPV++ G I A+A A+ P+
Sbjct: 188 SYQPTLEPNDMQIKKILKQ----LSKAKKPVILAGGGINYAEAATELNAFAERYQIPVVT 243
Query: 269 MPSGKGLVPEHHPHFIGTYWGAVSSSFCGEI-VESADAYVFVGPIFNDYSSVGYSLLIKK 327
G+G + HP F+G G + S+ I + AD + +G F+D + K
Sbjct: 244 TLLGQGTIATSHPLFLGM--GGMHGSYAANIAMTEADFMINIGSRFDDRLTGNPKTFAKN 301
Query: 328 EKAIIVQPHRVTVGNGPSLGWVFMADFLSALAKKLRKNT----------TALENYRRIYV 377
K + +G + D AL L + T ++ R
Sbjct: 302 AKVAHIDIDPAEIGKIIKTDIPVVGDAKKALQMLLAEPTVHNNTEKWIEKVTKDKNR--- 358
Query: 378 PPGIPVKRAQNEPLRVNVLFKHIQDMLSGDTAVIAETGDSWFNCQKLRLPENCGYEFQMQ 437
+ + ++ + + I ++ +GD V+ + G ++ + Y+ + Q
Sbjct: 359 ---VRSYDKKERVVQPQAVIERIGELTNGDAIVVTDVGQ-----HQMWAAQYYPYQNERQ 410
Query: 438 ------YGSIGWSVGATLGYAQAAKDKRVIACIGDGSFQVTAQEISTMIRCGQRSIIFLI 491
G++G+ + A +G A DK VI +GDG FQ+T QE++ + + ++
Sbjct: 411 LVTSGGLGTMGFGIPAAIGAKIANPDKEVILFVGDGGFQMTNQELAILNIYKVPIKVVML 470
Query: 492 NN 493
NN
Sbjct: 471 NN 472
>gnl|CDD|235931 PRK07092, PRK07092, benzoylformate decarboxylase; Reviewed.
Length = 530
Score = 78.5 bits (194), Expect = 3e-15
Identities = 85/351 (24%), Positives = 134/351 (38%), Gaps = 61/351 (17%)
Query: 172 IDTAISTALKESK-PVYISISCNLPGIPHPTFARDPVPFFLAPKVSNQLGLE-AAVEATA 229
I A A++ + PV++SI P+ + + P A VS+ + + AA+
Sbjct: 149 IARAYHIAMQPPRGPVFVSI-------PYDDWDQ-PAEPLPARTVSSAVRPDPAALARLG 200
Query: 230 DFLNKAVKPVLVGGPNIRVAKAQKAFIELADATGYPIAIMP-SGKGLVPEHHPHFIGTYW 288
D L+ A +P LV GP + A A + LA+ P+ + P SG+ PE HP F G
Sbjct: 201 DALDAARRPALVVGPAVDRAGAWDDAVRLAERHRAPVWVAPMSGRCSFPEDHPLFAGFLP 260
Query: 289 GAVSSSFCGEIVESADAY--VFV--GPIFNDYSSVGYSLLIKKEKAIIVQPHRVT----- 339
+ +I D + V V P+F + L E A +VQ +T
Sbjct: 261 ASR-----EKISALLDGHDLVLVIGAPVFTYHVEGPGPHL--PEGAELVQ---LTDDPGE 310
Query: 340 ----------VGNGPSLGWVFMADFLSALAKKLRKNTTALENYRRIYVPPGIPVKRAQNE 389
VG+ + L L L + R P P A E
Sbjct: 311 AAWAPMGDAIVGD--------IRLALRDLLALLPPSARPAPPAR-----PMPPPAPAPGE 357
Query: 390 PLRVNVLFKHIQDMLSGDTAVIAE----TGDSWFNCQKLRLPENCGYEFQMQYGSIGWSV 445
PL V + + + + D V+ E + L + + M G +G+ +
Sbjct: 358 PLSVAFVLQTLAALRPADAIVVEEAPSTRPAMQ---EHLPMRRQGSFYT-MASGGLGYGL 413
Query: 446 GATLGYAQAAKDKRVIACIGDGSFQVTAQEISTMIRCGQRSIIFLINNGGY 496
A +G A A +RVI IGDGS + Q + + + ++NNG Y
Sbjct: 414 PAAVGVALAQPGRRVIGLIGDGSAMYSIQALWSAAQLKLPVTFVILNNGRY 464
>gnl|CDD|180368 PRK06048, PRK06048, acetolactate synthase 3 catalytic subunit;
Reviewed.
Length = 561
Score = 77.9 bits (192), Expect = 5e-15
Identities = 116/506 (22%), Positives = 204/506 (40%), Gaps = 92/506 (18%)
Query: 34 ARRLVEI----GAKDVFSVPGDFNLTLLDHLIAEPELNLVGCCNELNAGYAADGYARSRG 89
AR +++ G + +F PG + + D L + +L + +E A +AADGYAR+ G
Sbjct: 11 ARAIIKCLEKEGVEVIFGYPGGAIIPVYDELY-DSDLRHILVRHEQAAAHAADGYARATG 69
Query: 90 -VGACVVTFTVGGLSVLNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTI-GLPDFTQ 147
VG CV T G +++ IA AY +++P++ + G + G + I G+
Sbjct: 70 KVGVCVATSGPGATNLVTGIATAYMDSVPIVALTGQVPRSMIGNDAFQEADITGIT---- 125
Query: 148 ELRCFQAITCSQAVVNNLGDAHELIDTAISTALKESK-PVYISI---------------S 191
IT +V + D +I A A PV I +
Sbjct: 126 -----MPITKHNYLVQDAKDLPRIIKEAFHIASTGRPGPVLIDLPKDVTTAEIDFDYPDK 180
Query: 192 CNLPGIPHPTFARDPVPFFLAPKVSNQLGLEAAVEATADFLNKAVKPVLVGGPNIRVAKA 251
L G PT+ N ++ A E + KA +P++ G + + A
Sbjct: 181 VELRGY-KPTYK------------GNPQQIKRAAEL----IMKAERPIIYAGGGVISSNA 223
Query: 252 QKAFIELADATGYPIAIMPSGKGLVPEHHPHFIGTYWGAVSSSFCGEIVESADAYVFVGP 311
+ +ELA+ P+ G G +P HP +G G + + ++ +D + VG
Sbjct: 224 SEELVELAETIPAPVTTTLMGIGAIPTEHPLSLG-MLGMHGTKYANYAIQESDLIIAVGA 282
Query: 312 IFND--------YSSVGYSLLIKKEKAIIVQPHRVTVGNGPSLG---WVFMADFLSALAK 360
F+D ++ + I + A I + +V V P +G V L +L K
Sbjct: 283 RFDDRVTGKLASFAPNAKIIHIDIDPAEISKNVKVDV---PIVGDAKQV-----LKSLIK 334
Query: 361 KLRKNTTA-----LENYRRIYVPPGIPVK-RAQNEPLRVNVLFKHIQDMLSGDTAVIAET 414
++ + +++ Y P+K + + + ++ + + I + L D ++ E
Sbjct: 335 YVQYCDRKEWLDKINQWKKEY-----PLKYKEREDVIKPQYVIEQIYE-LCPDAIIVTEV 388
Query: 415 GD------SWFNCQKLRLPENCGYEFQMQYGSIGWSVGATLGYAQAAKDKRVIACIGDGS 468
G +F + R G M YG A +G DK VI GDGS
Sbjct: 389 GQHQMWAAQYFKYKYPRTFITSGGLGTMGYG-----FPAAIGAKVGKPDKTVIDIAGDGS 443
Query: 469 FQVTAQEISTMIRCGQRSIIFLINNG 494
FQ+ +QE++T ++ I+ ++NNG
Sbjct: 444 FQMNSQELATAVQNDIPVIVAILNNG 469
>gnl|CDD|132922 cd07039, TPP_PYR_POX, Pyrimidine (PYR) binding domain of POX.
Thiamine pyrophosphate (TPP family), pyrimidine (PYR)
binding domain of pyruvate oxidase (POX) subfamily. The
PYR domain is found in many key metabolic enzymes which
use TPP (also known as thiamine diphosphate) as a
cofactor. TPP binds in the cleft formed by a PYR domain
and a PP domain. The PYR domain, binds the
aminopyrimidine ring of TPP, the PP domain binds the
diphosphate residue. The PYR and PP domains have a
common fold, but do not share strong sequence
conservation. The PP domain is not included in this
sub-family. Most TPP-dependent enzymes have the PYR and
PP domains on the same subunit although these domains
can be alternatively arranged in the primary structure.
TPP-dependent enzymes are multisubunit proteins, the
smallest catalytic unit being a dimer-of-active sites.
Lactobacillus plantarum POX is a homotetramer
(dimer-of-homodimers), having two active sites per
homodimer lying between PYR and PP domains of different
subunits. POX decarboxylates pyruvate, producing
hydrogen peroxide and the energy-storage metabolite
acetylphosphate.
Length = 164
Score = 69.9 bits (172), Expect = 5e-14
Identities = 44/175 (25%), Positives = 77/175 (44%), Gaps = 15/175 (8%)
Query: 28 TLGRHLARRLVEIGAKDVFSVPGDFNLTLLDHLIAEPELNLVGCCNELNAGYAADGYARS 87
T+ + L G K V+ +PGD L+D L E ++ + +E A +AA A+
Sbjct: 1 TVADVIVETLENWGVKRVYGIPGDSINGLMDALRREGKIEFIQVRHEEAAAFAASAEAKL 60
Query: 88 RG-VGACVVTFTVGGLSVLNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFT 146
G +G C+ + G + +LN + A + PV+ I G +++ GT D+
Sbjct: 61 TGKLGVCLGSSGPGAIHLLNGLYDAKRDRAPVLAIAGQVPTDELGT-----------DYF 109
Query: 147 QE---LRCFQAITCSQAVVNNLGDAHELIDTAISTALKESKPVYISISCNLPGIP 198
QE L F+ + V + EL+D AI TA+ + + + ++ P
Sbjct: 110 QEVDLLALFKDVAVYNETVTSPEQLPELLDRAIRTAIAKRGVAVLILPGDVQDAP 164
>gnl|CDD|180570 PRK06457, PRK06457, pyruvate dehydrogenase; Provisional.
Length = 549
Score = 72.2 bits (177), Expect = 3e-13
Identities = 119/512 (23%), Positives = 211/512 (41%), Gaps = 60/512 (11%)
Query: 35 RRLVEIGAKDVFSVPGDFNLTLLDHLIAEPELNLVGCCNELNAGYAADGYARSRG-VGAC 93
R L + G + ++ +PGD L+D I + ++ V +E A AA A+ G AC
Sbjct: 10 RVLEDNGIQRIYGIPGDSIDPLVD-AIRKSKVKYVQVRHEEGAALAASVEAKITGKPSAC 68
Query: 94 VVTFTVGGLSVLNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQEL---R 150
+ T G + +LN + A ++ PVI + G S+ ++ H D+ QE+ +
Sbjct: 69 MGTSGPGSIHLLNGLYDAKMDHAPVIALTGQVESD------MIGH-----DYFQEVNLTK 117
Query: 151 CFQAITCSQAVVNNLGDAHELIDTAISTALKESKPVYISISCNLP-GIPHPTFARDPVPF 209
F + ++ N +A +I AI A+ + +I NLP I +
Sbjct: 118 LFDDVAVFNQILINPENAEYIIRRAIREAISKRGVAHI----NLPVDILRKSSEYKGSKN 173
Query: 210 FLAPKVSNQLGLEAAVEATADFLNKAVKPVLVGGPNIRVAKAQKAFIELADATGYPIAIM 269
KV + A E + ++ KPVL+ G R K A+ G PI
Sbjct: 174 TEVGKVKYSIDFSRAKE----LIKESEKPVLLIGGGTR--GLGKEINRFAEKIGAPIIYT 227
Query: 270 PSGKGLVPEHHPHFIGTYWGAVSSSFCGEIVESADAYVFVGPIFNDYSSVGYSLLIKKEK 329
+GKG++P+ P +G G + + E ++ AD + +G F Y + K
Sbjct: 228 LNGKGILPDLDPKVMGGI-GLLGTKPSIEAMDKADLLIMLGTSFP------YVNFLNKSA 280
Query: 330 AIIVQPHRVTVGNGPS-LGWVFMAD---------FLSA-LAKKLRKNTTALENYRRIYVP 378
+I V S +G D FL+ + +K K L+ + ++
Sbjct: 281 KVI------QVDIDNSNIGKRLDVDLSYPIPVAEFLNIDIEEKSDKFYEELKGKKEDWLD 334
Query: 379 PGIPVKRAQNEPLRVNVLFKHIQDMLSGDTAVIAETGDS--WFNCQKLRLPENCGYEFQM 436
+ + ++P++ + + D ++ +TG+ W + R + F
Sbjct: 335 SISKQENSLDKPMKPQRVAYIVSQKCKKDAVIVTDTGNVTMWTA-RHFRASGEQTFIFSA 393
Query: 437 QYGSIGWSVGATLGYAQAAKDKR-VIACIGDGSFQVTAQEISTMIRCGQRSIIFLINN-- 493
GS+G V ++G + A ++KR VI+ +GDG F +T E+ T + I + NN
Sbjct: 394 WLGSMGIGVPGSVGASFAVENKRQVISFVGDGGFTMTMMELITAKKYDLPVKIIIYNNSK 453
Query: 494 -GGYTIEVEIHDGP-YNV-IKNWDYTGLVNAI 522
G E E+ P + V + N D+T + +I
Sbjct: 454 LGMIKFEQEVMGYPEWGVDLYNPDFTKIAESI 485
>gnl|CDD|217223 pfam02775, TPP_enzyme_C, Thiamine pyrophosphate enzyme, C-terminal
TPP binding domain.
Length = 151
Score = 66.8 bits (164), Expect = 3e-13
Identities = 39/132 (29%), Positives = 61/132 (46%), Gaps = 16/132 (12%)
Query: 438 YGSIGWSVGATLGYAQAAKDKRVIACIGDGSFQVTAQEISTMIRCGQRSIIFLINNGGY- 496
G++G+ + A +G A D+ V+A GDG FQ+ QE++T +R + ++NNGGY
Sbjct: 27 LGTMGYGLPAAIGAKLARPDRPVVAIAGDGGFQMNLQELATAVRYNLPITVVVLNNGGYG 86
Query: 497 ---TIEVEIHDGPY-----NVIKNWDYTGLVNAIHNGEGKCWTAKVRSEDELTEAMKTAT 548
+ G Y + D+ L A A+V S +EL EA+K A
Sbjct: 87 MTRGQQTPFGGGRYSGPDGKDLPPVDFAKLAEAYG-----AKGARVESPEELEEALKEA- 140
Query: 549 GEQKDSLCFIEV 560
+ D I+V
Sbjct: 141 -LEHDGPALIDV 151
>gnl|CDD|180578 PRK06466, PRK06466, acetolactate synthase 3 catalytic subunit;
Validated.
Length = 574
Score = 70.5 bits (173), Expect = 8e-13
Identities = 127/573 (22%), Positives = 224/573 (39%), Gaps = 72/573 (12%)
Query: 30 GRHLARRLVEIGAKDVFSVPGDFNLTLLDHLIAEPELNLVGCCNELNAGYAADGYARSRG 89
L R L + G + ++ PG L + D L + ++ + +E A + ADGYAR+ G
Sbjct: 7 AEMLVRALRDEGVEYIYGYPGGAVLHIYDALFKQDKVEHILVRHEQAATHMADGYARATG 66
Query: 90 -VGACVVTFTVGGLSVLNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQE 148
G +VT G + + IA AY +++P++ + G S G D QE
Sbjct: 67 KTGVVLVTSGPGATNAITGIATAYMDSIPMVVLSGQVPSTLIGE-----------DAFQE 115
Query: 149 LRCFQAITCSQAVVNN---LGDAHELIDTAISTA--LKES---KPVYISISCNLPGIPHP 200
+ S+ +V + + A E I I A + +S PV + I ++ P
Sbjct: 116 T---DMVGISRPIVKHSFMVKHASE-IPEIIKKAFYIAQSGRPGPVVVDIPKDM-TNPAE 170
Query: 201 TFARD-PVPFFLAPKVSNQLGLEAAVEATADFLNKAVKPVLVGGPNIRVAKAQKAFIELA 259
F + P L G + + L A +PV+ G + + A ELA
Sbjct: 171 KFEYEYPKKVKLRSYSPAVRGHSGQIRKAVEMLLAAKRPVIYSGGGVVLGNASALLTELA 230
Query: 260 DATGYPIAIMPSGKGLVPEHHPHFIGTYWGAVSSSFCGEI-VESADAYVFVGPIFNDYSS 318
P+ G G P F+G + ++ + + AD + VG F+D +
Sbjct: 231 HLLNLPVTNTLMGLGGFPGTDRQFLG--MLGMHGTYEANMAMHHADVILAVGARFDDRVT 288
Query: 319 VGYSLLIKKEKAIIV--QPHRVT---VGNGPSLGWVF-----MADFLSALAKKLRKNTTA 368
G + K I + P ++ + P +G V M L + +K K A
Sbjct: 289 NGPAKFCPNAKIIHIDIDPASISKTIKADIPIVGPVESVLTEMLAILKEIGEKPDKEALA 348
Query: 369 -----LENYRRIYVPPGIPVKRAQNEPLRVNVLFKHIQDMLSGDTAVIAETGD-SWFNCQ 422
++ +R + P + ++ + + + ++ +GD V ++ G F Q
Sbjct: 349 AWWKQIDEWRGRH--GLFPYDKGDGGIIKPQQVVETLYEVTNGDAYVTSDVGQHQMFAAQ 406
Query: 423 KLRLPE-----NCGYEFQMQYGSIGWSVGATLGYAQAAKDKRVIACIGDGSFQVTAQEIS 477
+ + N G G++G+ + A +G A D+ V G+GS Q+ QE+S
Sbjct: 407 YYKFNKPNRWINSG-----GLGTMGFGLPAAMGVKLAFPDQDVACVTGEGSIQMNIQELS 461
Query: 478 TMIRCGQRSIIFLINNGGYTIEVEIHDGPYN-------VIKNWDYTGLVNAI-HNGEGKC 529
T ++ G I +NNG + + D Y + D+ L A H G
Sbjct: 462 TCLQYGLPVKIINLNNGALGMVRQWQDMQYEGRHSHSYMESLPDFVKLAEAYGHVG---- 517
Query: 530 WTAKVRSEDELTEAMKTATGEQKDSLCFIEVFV 562
++ +L ++ A KD L FI+++V
Sbjct: 518 --IRITDLKDLKPKLEEAF-AMKDRLVFIDIYV 547
>gnl|CDD|181257 PRK08155, PRK08155, acetolactate synthase catalytic subunit;
Validated.
Length = 564
Score = 70.1 bits (172), Expect = 1e-12
Identities = 79/301 (26%), Positives = 130/301 (43%), Gaps = 40/301 (13%)
Query: 30 GRHLARRLVE-IGAKDVFSVPGDFNLTLLDHLIAEPELNLVGCCNELNAGYAADGYARSR 88
G L RL+E G + V +PG L L D L ++ + +E AG+ A G AR+
Sbjct: 15 GAELIVRLLERQGIRIVTGIPGGAILPLYDALSQSTQIRHILARHEQGAGFIAQGMARTT 74
Query: 89 GVGA-CVVTFTVGGLSVLNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQ 147
G A C+ G +++ AIA A +++P++CI G ++ GT D Q
Sbjct: 75 GKPAVCMACSGPGATNLVTAIADARLDSIPLVCITGQVPASMIGT-----------DAFQ 123
Query: 148 ELRCFQ---AITCSQAVVNNLGDAHELIDTAISTALK-ESKPVYISI-------SCNLPG 196
E+ + IT +V ++ + ++I A A PV+I I L
Sbjct: 124 EVDTYGISIPITKHNYLVRDIEELPQVISDAFRIAQSGRPGPVWIDIPKDVQTAVIELEA 183
Query: 197 IPHPTFARDPVPFFLAPKVSNQLGLEAAVEATADFLNKAVKPVLVGGPNIRVAKAQKAFI 256
+P P +D P F ++ A +N A +PVL G + + A
Sbjct: 184 LPAP-AEKDAAPAFDE----------ESIRDAAAMINAAKRPVLYLGGGVINSGAPARAR 232
Query: 257 ELADATGYPIAIMPSGKGLVPEHHPHFIGT--YWGAVSSSFCGEIVESADAYVFVGPIFN 314
ELA+ P + G++P+ HP +G GA S+++ I++ AD + +G F+
Sbjct: 233 ELAEKAQLPTTMTLMALGMLPKAHPLSLGMLGMHGARSTNY---ILQEADLLIVLGARFD 289
Query: 315 D 315
D
Sbjct: 290 D 290
Score = 38.5 bits (90), Expect = 0.009
Identities = 18/55 (32%), Positives = 31/55 (56%)
Query: 439 GSIGWSVGATLGYAQAAKDKRVIACIGDGSFQVTAQEISTMIRCGQRSIIFLINN 493
G++G+ + A +G A A +++V+ GDGS + QE++T I L+NN
Sbjct: 419 GTMGFGLPAAIGAALANPERKVLCFSGDGSLMMNIQEMATAAENQLDVKIILMNN 473
>gnl|CDD|238960 cd02002, TPP_BFDC, Thiamine pyrophosphate (TPP) family, BFDC
subfamily, TPP-binding module; composed of proteins
similar to Pseudomonas putida benzoylformate
decarboxylase (BFDC). P. putida BFDC plays a role in the
mandelate pathway, catalyzing the conversion of
benzoylformate to benzaldehyde and carbon dioxide. This
enzyme is dependent on TPP and a divalent metal cation
as cofactors.
Length = 178
Score = 66.1 bits (162), Expect = 1e-12
Identities = 52/184 (28%), Positives = 78/184 (42%), Gaps = 18/184 (9%)
Query: 391 LRVNVLFKHIQDMLSGDTAVIAE---TGDSWFNCQKLRLPENCGYEFQMQYGSIGWSVGA 447
L L + L D ++ E G + L P Y F ++ G +GW + A
Sbjct: 1 LTPEYLAAALAAALPEDAIIVDEAVTNGLPLRDQLPLTRPG--SY-FTLRGGGLGWGLPA 57
Query: 448 TLGYAQAAKDKRVIACIGDGSFQVTAQEISTMIRCGQRSIIFLINNGGYTI---EVEIHD 504
+G A A D++V+A IGDGSF T Q + T R G + ++NN GY ++
Sbjct: 58 AVGAALANPDRKVVAIIGDGSFMYTIQALWTAARYGLPVTVVILNNRGYGALRSFLKRVG 117
Query: 505 GPYNVIKNWDYTGLVN------AIHNGEGKCWTAKVRSEDELTEAMKTATGEQKDSLCFI 558
D L++ AI G +V + +EL EA++ A E +L I
Sbjct: 118 PEGPGENAPDGLDLLDPGIDFAAIAKAFG-VEAERVETPEELDEALREALAEGGPAL--I 174
Query: 559 EVFV 562
EV V
Sbjct: 175 EVVV 178
>gnl|CDD|236042 PRK07525, PRK07525, sulfoacetaldehyde acetyltransferase; Validated.
Length = 588
Score = 69.6 bits (171), Expect = 2e-12
Identities = 78/332 (23%), Positives = 131/332 (39%), Gaps = 58/332 (17%)
Query: 37 LVEIGAKDVFSVPGDFNLTLLDHLIAEPELNLVGCCNELNAGYAADGYARSRG-VGACVV 95
L G F + G + D L + + +E NAG+ ADGY R G +G +
Sbjct: 16 LQAHGITHAFGIIGSAFMDASD-LFPPAGIRFIDVAHEQNAGHMADGYTRVTGRMGMVIG 74
Query: 96 TFTVGGLSVLNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQE---LRCF 152
G + + A+A AY + PV+ + T + TIG F QE + F
Sbjct: 75 QNGPGITNFVTAVATAYWAHTPVVLV----------TPQAGTKTIGQGGF-QEAEQMPMF 123
Query: 153 QAITCSQAVVNNLGDAHELIDTAISTALKESKPVYISISCNLP----------GIPHPTF 202
+ +T Q V + E+++ A +ES P I N+P IP P
Sbjct: 124 EDMTKYQEEVRDPSRMAEVLNRVFDKAKRESGPAQI----NIPRDYFYGVIDVEIPQP-- 177
Query: 203 ARDPVPFFLAPKVSNQLGLEAAVEATADFLNKAVKPVLVGGPNIRVAKAQKAFIELADAT 262
++ G E ++ A+ L++A PV++ G + ++ A + LA+
Sbjct: 178 ----------VRLERGAGGEQSLAEAAELLSEAKFPVILSGAGVVLSDAIEECKALAERL 227
Query: 263 GYPIAIMPSGKGLVPEHHPHFIGT--YWGAVSSSFCGEIVESADAYVFVGPIFNDYSSV- 319
P+A P HP ++G Y G S E++ AD + +G N + ++
Sbjct: 228 DAPVACGYLHNDAFPGSHPLWVGPLGYNG---SKAAMELIAKADVVLALGTRLNPFGTLP 284
Query: 320 GYSLLIKKEKAIIVQ----------PHRVTVG 341
Y + + A I+Q +V+VG
Sbjct: 285 QYGIDYWPKDAKIIQVDINPDRIGLTKKVSVG 316
Score = 45.0 bits (107), Expect = 9e-05
Identities = 31/133 (23%), Positives = 59/133 (44%), Gaps = 13/133 (9%)
Query: 436 MQYGSIGWSVGATLGYAQAAKDKRVIACIGDGSFQVTAQEISTMIRCGQRSIIFLINNGG 495
+G+ G++ A +G A D+ V+ GDG++ ++ E+ T +R + N
Sbjct: 432 GSFGNCGYAFPAIIGAKIACPDRPVVGFAGDGAWGISMNEVMTAVRHNWPVTAVVFRNYQ 491
Query: 496 YTIE----VEIHDGPY---NVIKNWDYTGLVNAIHNGEGKCWTAKVRSEDELTEAMKTAT 548
+ E V+ ++ + + N Y G+ A+ EG V +++EL A+K A
Sbjct: 492 WGAEKKNQVDFYNNRFVGTELDNNVSYAGIAEAM-GAEG----VVVDTQEELGPALKRAI 546
Query: 549 GEQKDSL-CFIEV 560
Q + IE+
Sbjct: 547 DAQNEGKTTVIEI 559
>gnl|CDD|180780 PRK06965, PRK06965, acetolactate synthase 3 catalytic subunit;
Validated.
Length = 587
Score = 67.5 bits (165), Expect = 1e-11
Identities = 123/536 (22%), Positives = 213/536 (39%), Gaps = 86/536 (16%)
Query: 1 MDTANAMGSTGQPGSAPAPVRGGASVGTLGRHLARRLVEIGAKDVFSVPGDFNLTLLDHL 60
M+ +A ST + S PA GA + L + L G + ++ PG L + D L
Sbjct: 1 MNMPSAEFSTAESLSPPAADSIGAEI------LMKALAAEGVEFIWGYPGGAVLYIYDEL 54
Query: 61 IAEPELNLVGCCNELNAGYAADGYARSRG-VGACVVTFTVGGLSVLNAIAGAYSENLPVI 119
+ ++ V +E A +AADGYAR+ G VG +VT G + + IA AY +++P++
Sbjct: 55 YKQDKIQHVLVRHEQAAVHAADGYARATGKVGVALVTSGPGVTNAVTGIATAYMDSIPMV 114
Query: 120 CIVGGPNSNDYGTNRILHHTIGLPDFTQELRCFQAITCSQAVVNN---LGDAHELIDTAI 176
I G ++ IG F QE C + ++ +V + + D +L +T
Sbjct: 115 VISG----------QVPTAAIGQDAF-QE--C-DTVGITRPIVKHNFLVKDVRDLAETV- 159
Query: 177 STALKESKPVYISISCNLPGIPHPTF-------ARDPVPFFLAPKVSNQ------LGLEA 223
K YI+ + G P P ++ P + V + G
Sbjct: 160 ------KKAFYIART----GRPGPVVVDIPKDVSKTPCEYEYPKSVEMRSYNPVTKGHSG 209
Query: 224 AVEATADFLNKAVKPVLVGGPNIRVAKAQKAFIELADATGYPIAIMPSGKGLVPEHHPHF 283
+ L A +P + G + +A A + +LAD GYP+ G G P F
Sbjct: 210 QIRKAVSLLLSAKRPYIYTGGGVILANASRELRQLADLLGYPVTNTLMGLGAYPASDKKF 269
Query: 284 IGTYWGAVSSSFCGEIVESADAYVFVGPIFNDYSSVGYSLLIKKEKAII---VQP----H 336
+G G + ++ D + +G F+D + + + II + P
Sbjct: 270 LGML-GMHGTYEANMAMQHCDVLIAIGARFDDRVIGNPAHFASRPRKIIHIDIDPSSISK 328
Query: 337 RVTVGNGPSLGWVFMADFLSALAKKLRKNTT------------ALENYRRIYVPPGIPVK 384
RV V + P +G V + L L ++L+ +E +R +
Sbjct: 329 RVKV-DIPIVGDV--KEVLKELIEQLQTAEHGPDADALAQWWKQIEGWRSRDC---LKYD 382
Query: 385 RAQNEPLRVNVLFKHIQDMLSGDTAVIAETGD-SWFNCQKLRLPE-----NCGYEFQMQY 438
R ++E ++ + + + ++ GD V ++ G + Q R E N G
Sbjct: 383 R-ESEIIKPQYVVEKLWELTDGDAFVCSDVGQHQMWAAQFYRFNEPRRWINSG-----GL 436
Query: 439 GSIGWSVGATLGYAQAAKDKRVIACIGDGSFQVTAQEISTMIRCGQRSIIFLINNG 494
G++G + +G A D V+ G+GS Q+ QE+ST ++ I +NN
Sbjct: 437 GTMGVGLPYAMGIKMAHPDDDVVCITGEGSIQMCIQELSTCLQYDTPVKIISLNNR 492
>gnl|CDD|236243 PRK08327, PRK08327, acetolactate synthase catalytic subunit;
Validated.
Length = 569
Score = 67.3 bits (165), Expect = 1e-11
Identities = 113/526 (21%), Positives = 183/526 (34%), Gaps = 97/526 (18%)
Query: 26 VGTLGRHLARRLVEIGAKDVFSVPGDFNLTLLDH--LIAE-----------PELNLVGCC 72
+ T L E+G +F G D+ +I PE V C
Sbjct: 6 MYTAAELFLELLKELGVDYIFINSGT------DYPPIIEAKARARAAGRPLPEF--VICP 57
Query: 73 NELNAGYAADGYARSRG-VGACVVTFTVGGLSVLNAIAGAYSENLPVICIVG-GPNSND- 129
+E+ A A GYA G A +V VG + L + A +PV+ G P + +
Sbjct: 58 HEIVAISMAHGYALVTGKPQAVMVHVDVGTANALGGVHNAARSRIPVLVFAGRSPYTEEG 117
Query: 130 -YGT-NRILHHTIGLPDFTQELRCFQAITCSQAV-----VNNLGDAHELIDTAISTALKE 182
G+ N +H +TQE+R Q + V + E++ AI A+ E
Sbjct: 118 ELGSRNTRIH-------WTQEMRD-QGGLVREYVKWDYEIRRGDQIGEVVARAIQIAMSE 169
Query: 183 SK-PVYISISCNLPGIPHPTFARDPVPFFLAPKVSNQLGLEAAVEATADFLNKAVKPVLV 241
K PVY+++ + P D + + A+ L A +PV++
Sbjct: 170 PKGPVYLTLPREVLAEEVPEVKADAGRQ---MAPAPPAPDPEDIARAAEMLAAAERPVII 226
Query: 242 GGPNIRVAKAQKAFIELADATGYPIAIMPSGKGLV-PEHHPHFIGTYWGAVSSSFCGEIV 300
R A+ + LA+ P+ + +G+ + P HP +G +
Sbjct: 227 TWRAGRTAEGFASLRRLAEELAIPV-VEYAGEVVNYPSDHPLHLG--------PDPRADL 277
Query: 301 ESADAYVFVGPIFNDYSSVGY--SLLIKKEKAIIVQPHRVTVGNGPSLG----WVFMADF 354
AD + V S V + + A ++Q + P W F D
Sbjct: 278 AEADLVLVVD------SDVPWIPKKIRPDADARVIQ-----IDVDPLKSRIPLWGFPCDL 326
Query: 355 ------------LSALAKKLRKNTTALENYRRIYVPP----------GIPVKRAQNEPLR 392
L K L RR V + P+
Sbjct: 327 CIQADTSTALDQLEERLKSLASAERRRARRRRAAVRELRIRQEAAKRAEIERLKDRGPIT 386
Query: 393 VNVLFKHIQDMLSGDTAVIAETGDSWFNCQKLRLPENCGYEFQMQYGSIGWSVGATLGYA 452
L + ++ A++ E F ++ RL + Y G +GW++GA LG
Sbjct: 387 PAYLSYCLGEVADEYDAIVTEYP---FVPRQARLNKPGSYFGDGSAGGLGWALGAALGAK 443
Query: 453 QAAKDKRVIACIGDGSFQVTAQEISTMI--RCGQRSIIFLINNGGY 496
A D+ VIA +GDGSF E + + R G ++ + NNGG+
Sbjct: 444 LATPDRLVIATVGDGSFIFGVPEAAHWVAERYGLPVLVVVFNNGGW 489
>gnl|CDD|181601 PRK08978, PRK08978, acetolactate synthase 2 catalytic subunit;
Reviewed.
Length = 548
Score = 67.2 bits (165), Expect = 1e-11
Identities = 62/221 (28%), Positives = 93/221 (42%), Gaps = 24/221 (10%)
Query: 71 CCNELNAGYAADGYARSRG-VGACVVTFTVGGLSVLNAIAGAYSENLPVICIVGGPNSND 129
C +E A AA GYAR+ G VG C+ T G +++ +A A +++PV+ I G +S
Sbjct: 44 CRHEQGAAMAAIGYARATGKVGVCIATSGPGATNLITGLADALLDSVPVVAITGQVSSPL 103
Query: 130 YGTNRILHHTIGLPDFTQELRCFQ---AITCSQAVVNNLGDAHELIDTAISTALKESK-- 184
GT D QE+ A T +V +L + E++ A A +
Sbjct: 104 IGT-----------DAFQEIDVLGLSLACTKHSFLVQSLEELPEIMAEAFEIA-SSGRPG 151
Query: 185 PVYISISCNLPGIPHPTFARDPVPFFLAPKVSNQLGLEAAVEATADFLNKAVKPVLVGGP 244
PV + I ++ A + L + A +E L +A KPVL G
Sbjct: 152 PVLVDIPKDI------QLAEGELEPHLTTVENEPAFPAAELEQARALLAQAKKPVLYVGG 205
Query: 245 NIRVAKAQKAFIELADATGYPIAIMPSGKGLVPEHHPHFIG 285
+ +A A A E ATG P G G V HP+++G
Sbjct: 206 GVGMAGAVPALREFLAATGMPAVATLKGLGAVEADHPYYLG 246
Score = 36.8 bits (86), Expect = 0.029
Identities = 22/56 (39%), Positives = 33/56 (58%), Gaps = 2/56 (3%)
Query: 439 GSIGWSVGATLGYAQAAK-DKRVIACIGDGSFQVTAQEISTMIRCGQRSIIFLINN 493
G++G+ + A +G AQ A+ D VI GDGSF + QE+ T+ R I L++N
Sbjct: 401 GTMGFGLPAAIG-AQVARPDDTVICVSGDGSFMMNVQELGTIKRKQLPVKIVLLDN 455
>gnl|CDD|238962 cd02004, TPP_BZL_OCoD_HPCL, Thiamine pyrophosphate (TPP) family,
BZL_OCoD_HPCL subfamily, TPP-binding module; composed of
proteins similar to benzaldehyde lyase (BZL), oxalyl-CoA
decarboxylase (OCoD) and 2-hydroxyphytanoyl-CoA lyase
(2-HPCL). Pseudomonas fluorescens biovar I BZL cleaves
the acyloin linkage of benzoin producing 2 molecules of
benzaldehyde and enabling the Pseudomonas to grow on
benzoin as the sole carbon and energy source. OCoD has a
role in the detoxification of oxalate, catalyzing the
decarboxylation of oxalyl-CoA to formate. 2-HPCL is a
peroxisomal enzyme which plays a role in the
alpha-oxidation of 3-methyl-branched fatty acids,
catalyzing the cleavage of 2-hydroxy-3-methylacyl-CoA
into formyl-CoA and a 2-methyl-branched fatty aldehyde.
All these enzymes depend on Mg2+ and TPP for activity.
Length = 172
Score = 62.9 bits (154), Expect = 1e-11
Identities = 41/180 (22%), Positives = 74/180 (41%), Gaps = 20/180 (11%)
Query: 390 PLRVNVLFKHIQDMLSGDTAVIAETGD------SWFNCQKLRLPENCGYEFQMQYGSIGW 443
P RV +Q+ L D ++++ G+ +K R + G +G++G
Sbjct: 1 PYRV---LHELQEALPDDAIIVSDGGNTMDWARYILRPRKPRHRLDAGT-----FGTLGV 52
Query: 444 SVGATLGYAQAAKDKRVIACIGDGSFQVTAQEISTMIRCGQRSIIFLINNGGYTIEVEIH 503
+G + A A DKRV+ GDG+F + E+ T +R ++ + NNGG+ ++
Sbjct: 53 GLGYAIAAALARPDKRVVLVEGDGAFGFSGMELETAVRYNLPIVVVVGNNGGWYQGLDGQ 112
Query: 504 DGPYNVIKNWDYTGLVNAIHNGEGK---CWTAKVRSEDELTEAMKTATGEQKDSLCFIEV 560
Y + T L + ++ + V + +EL A+K A I V
Sbjct: 113 QLSYGLGLP-VTTLLPDTRYDLVAEAFGGKGELVTTPEELKPALKRA--LASGKPALINV 169
>gnl|CDD|181285 PRK08199, PRK08199, thiamine pyrophosphate protein; Validated.
Length = 557
Score = 65.7 bits (161), Expect = 3e-11
Identities = 87/380 (22%), Positives = 145/380 (38%), Gaps = 76/380 (20%)
Query: 222 EAAVEATADFLNKAVKPVLVGGPNIRVAKAQKAFIELADATGYPIAIMPSGKGLVPEHHP 281
A + A+ L +A +P+++ G + A A+ G P+A + L HP
Sbjct: 191 AADLARLAELLARAERPLVILGGSGWTEAAVADLRAFAERWGLPVACAFRRQDLFDNRHP 250
Query: 282 HFIGTY-WGAVSSSFCGEIVESADAYVFVGPIFNDYSSVGYSLL-IKKEKAIIVQPHRVT 339
++ G G + + AD + VG + ++ GY+LL I + +V H
Sbjct: 251 NYAGDLGLGINPA--LAARIREADLVLAVGTRLGEVTTQGYTLLDIPVPRQTLVHVHP-- 306
Query: 340 VGNGPS-LGWVF---------MADFLSALAKKLRKNTT---------ALENYRRIYVPPG 380
LG V+ A F +ALA L + A +Y P
Sbjct: 307 ---DAEELGRVYRPDLAIVADPAAFAAALAA-LEPPASPAWAEWTAAAHADYLAWSAPLP 362
Query: 381 IPVKRAQNEPLRVNVLFKHIQDMLSGDTAVIAETGD--SW---FNCQKLRLPENCGYEFQ 435
P Q + +++ L D + G+ +W F + F+
Sbjct: 363 GP-GAVQLGEV-----MAWLRERLPADAIITNGAGNYATWLHRF------------FRFR 404
Query: 436 MQYGSIGWSVGATLGY----AQAAK----DKRVIACIGDGSFQVTAQEISTMIRCGQRSI 487
+ + G+ +GY A AAK ++ V+A GDG F + QE++T ++ G I
Sbjct: 405 RYRTQLAPTSGS-MGYGLPAAIAAKLLFPERTVVAFAGDGCFLMNGQELATAVQYGLPII 463
Query: 488 IFLINNGGY-TIEV--EIHDGPYNVI----KNWDYTGLVNAIHNGEGKCWTAKVRSEDEL 540
+ ++NNG Y TI + E P V N D+ L A + G G V ++
Sbjct: 464 VIVVNNGMYGTIRMHQERE-YPGRVSGTDLTNPDFAALARA-YGGHG----ETVERTEDF 517
Query: 541 TEAMKTATGEQKDSLCFIEV 560
A + A K +L IE+
Sbjct: 518 APAFERALASGKPAL--IEI 535
Score = 51.8 bits (125), Expect = 6e-07
Identities = 34/100 (34%), Positives = 48/100 (48%), Gaps = 7/100 (7%)
Query: 28 TLGRHLARRLVEIGAKDVFSVPGDFNLTLLDHLIAEPELNLVGCCNELNAGYAADGYARS 87
T G+ L L G + VF VPG+ L +LD L E ++ ++ C E A A+ Y +
Sbjct: 9 TGGQILVDALRANGVERVFCVPGESYLAVLDALHDETDIRVIVCRQEGGAAMMAEAYGKL 68
Query: 88 RG-VGACVVTFTVGGLSVLNAIAG---AYSENLPVICIVG 123
G G C VT G NA G A+ ++ P+I VG
Sbjct: 69 TGRPGICFVTRGPGA---TNASIGVHTAFQDSTPMILFVG 105
>gnl|CDD|236239 PRK08322, PRK08322, acetolactate synthase; Reviewed.
Length = 547
Score = 64.5 bits (158), Expect = 7e-11
Identities = 70/288 (24%), Positives = 117/288 (40%), Gaps = 50/288 (17%)
Query: 41 GAKDVFSVPGDFNLTLLDHLIAEPELNLVGCCNELNAGYAADGYARSRG-VGACVVTFTV 99
G + +F +PG+ NL LL+ L + L+ +E A + A Y R G G C+ T
Sbjct: 15 GVEYIFGIPGEENLDLLEALRDSS-IKLILTRHEQGAAFMAATYGRLTGKAGVCLSTLGP 73
Query: 100 GGLSVLNAIAGAYSENLPVICIVGGPNSNDYGTNRI---LHHTIGLPDFTQELRCFQAIT 156
G +++ +A A +P++ I G R + + + +T
Sbjct: 74 GATNLVTGVAYAQLGGMPMVAITG-----QKPIKRSKQGSFQIVDV------VAMMAPLT 122
Query: 157 -CSQAVVNNLGDAHELIDTAISTALK---ESKP--VYISISCNL-----PGIPHPT-FAR 204
++ +V+ D I + A + E +P V++ + ++ G P P ++R
Sbjct: 123 KWTRQIVS--PDN---IPEVVREAFRLAEEERPGAVHLELPEDIAAEETDGKPLPRSYSR 177
Query: 205 DPVPFFLAPKVSNQLGLEAAVEATADFLNKAVKPV-LVGGPNIRVAKAQKAFIELADATG 263
P A+E A+ + A P+ L+G R A KA E D TG
Sbjct: 178 RPYA------------SPKAIERAAEAIQAAKNPLILIGAGANR-KTASKALTEFVDKTG 224
Query: 264 YPIAIMPSGKGLVPEHHPHFIGTYWGAVSS-SFCGEIVESADAYVFVG 310
P GKG++PE HP +GT +S + +E AD + VG
Sbjct: 225 IPFFTTQMGKGVIPETHPLSLGT--AGLSQGDYVHCAIEHADLIINVG 270
Score = 44.4 bits (106), Expect = 1e-04
Identities = 21/57 (36%), Positives = 35/57 (61%), Gaps = 4/57 (7%)
Query: 444 SVGATLGYAQAAK----DKRVIACIGDGSFQVTAQEISTMIRCGQRSIIFLINNGGY 496
++GA L A AAK D++V+A GDG F + +QE+ T +R G ++ ++N+ Y
Sbjct: 407 TMGAGLPSAIAAKLVHPDRKVLAVCGDGGFMMNSQELETAVRLGLPLVVLILNDNAY 463
>gnl|CDD|180672 PRK06725, PRK06725, acetolactate synthase 3 catalytic subunit;
Validated.
Length = 570
Score = 64.2 bits (156), Expect = 9e-11
Identities = 108/484 (22%), Positives = 193/484 (39%), Gaps = 47/484 (9%)
Query: 32 HLARRLVEIGAKDVFSVPGDFNLTLLDHLIAEPELNLVGCCNELNAGYAADGYARSRG-V 90
H+ + L ++G VF PG L + D L E L + +E A +AA+GYAR+ G V
Sbjct: 20 HVIQCLKKLGVTTVFGYPGGAILPVYDALY-ESGLKHILTRHEQAAIHAAEGYARASGKV 78
Query: 91 GACVVTFTVGGLSVLNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQE-- 148
G T G +++ +A AY +++P++ I G ++ IG F +
Sbjct: 79 GVVFATSGPGATNLVTGLADAYMDSIPLVVITG----------QVATPLIGKDGFQEADV 128
Query: 149 LRCFQAITCSQAVVNNLGDAHELIDTAISTALK-ESKPVYISISCNLPGIPHPTFARDPV 207
+ +T V ++ ++ A A PV I I ++ +F + V
Sbjct: 129 VGITVPVTKHNYQVRDVNQLSRIVQEAFYIAESGRPGPVLIDIPKDVQNEKVTSFYNEVV 188
Query: 208 --PFFLAPKVSNQLGLEAAVEATADFLNKAVKPVLVGGPNIRVAKAQKAFIELADATGYP 265
P + + + L +A ++KA +P+L G + + + IE A P
Sbjct: 189 EIPGYKPEPRPDSMKLREVAKA----ISKAKRPLLYIGGGVIHSGGSEELIEFARENRIP 244
Query: 266 IAIMPSGKGLVPEHHPHFIGTYWGAVSSSFCGEIVESADAYVFVGPIFNDYSSVGYSLLI 325
+ G G P P F+G G + V D + +G F+D + L
Sbjct: 245 VVSTLMGLGAYPPGDPLFLGML-GMHGTYAANMAVTECDLLLALGVRFDDRVTGKLELFS 303
Query: 326 KKEKAIIVQPHRVTVGNGPSLGWVFMADFLSALAKKLRKNT--------TALENYRRIYV 377
K + + ++ + + D AL L + ++ ++ Y
Sbjct: 304 PHSKKVHIDIDPSEFHKNVAVEYPVVGDVKKALHMLLHMSIHTQTDEWLQKVKTWKEEY- 362
Query: 378 PPGIPVKRAQNEPLRVNVLFKHIQDMLSGDTAVIAETGDS------WFNCQKLRLPENCG 431
P K ++ +P V L + ++ +G+ V E G ++ + R G
Sbjct: 363 PLSYKQKESELKPQHVINL---VSELTNGEAIVTTEVGQHQMWAAHFYKAKNPRTFLTSG 419
Query: 432 YEFQMQYGSIGWSVGATLGYAQAAKDKRVIACI-GDGSFQVTAQEISTMIRCGQRSIIFL 490
G++G+ A +G AQ AK++ ++ CI GD SFQ+ QE+ T+ +F+
Sbjct: 420 -----GLGTMGFGFPAAIG-AQLAKEEELVICIAGDASFQMNIQELQTIAENNIPVKVFI 473
Query: 491 INNG 494
INN
Sbjct: 474 INNK 477
>gnl|CDD|181602 PRK08979, PRK08979, acetolactate synthase 3 catalytic subunit;
Validated.
Length = 572
Score = 63.7 bits (155), Expect = 1e-10
Identities = 78/266 (29%), Positives = 116/266 (43%), Gaps = 32/266 (12%)
Query: 33 LARRLVEIGAKDVFSVPGDFNLTLLDHLIAEPELNLVGCCNELNAGYAADGYARSRG-VG 91
+ R L++ G K +F PG L + D L + + + +E A + ADGYAR+ G VG
Sbjct: 10 IVRSLIDEGVKHIFGYPGGSVLDIYDALHEKSGIEHILVRHEQAAVHMADGYARATGKVG 69
Query: 92 ACVVTFTVGGLSVLNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQELRC 151
+VT G + + IA AY +++P++ + G SN G D QE C
Sbjct: 70 VVLVTSGPGATNTITGIATAYMDSIPMVVLSGQVPSNLIGN-----------DAFQE--C 116
Query: 152 FQAITCSQAVV------NNLGDAHELIDTAISTALK-ESKPVYISI--SCNLPGIPHPTF 202
I S+ VV + D E+I A A PV I + C P I HP
Sbjct: 117 -DMIGISRPVVKHSFLVKDAEDIPEIIKKAFYIASTGRPGPVVIDLPKDCLNPAILHPYE 175
Query: 203 ARDPVPF-FLAPKVSNQLG-LEAAVEATADFLNKAVKPVL-VGGPNIRVAKAQKAFIELA 259
+ + P S G ++ ++A L A KPVL VGG I ++ A K ++LA
Sbjct: 176 YPESIKMRSYNPTTSGHKGQIKRGLQA----LLAAKKPVLYVGGGAI-ISGADKQILQLA 230
Query: 260 DATGYPIAIMPSGKGLVPEHHPHFIG 285
+ P+ G G P H + +G
Sbjct: 231 EKLNLPVVSTLMGLGAFPGTHKNSLG 256
Score = 36.7 bits (85), Expect = 0.036
Identities = 19/55 (34%), Positives = 31/55 (56%)
Query: 439 GSIGWSVGATLGYAQAAKDKRVIACIGDGSFQVTAQEISTMIRCGQRSIIFLINN 493
G++G+ + A +G A D+ V+ GDGS Q+ QE+ST ++ I +NN
Sbjct: 421 GTMGFGLPAAMGVKFAMPDETVVCVTGDGSIQMNIQELSTALQYDIPVKIINLNN 475
>gnl|CDD|168717 PRK06882, PRK06882, acetolactate synthase 3 catalytic subunit;
Validated.
Length = 574
Score = 63.4 bits (154), Expect = 1e-10
Identities = 127/550 (23%), Positives = 215/550 (39%), Gaps = 50/550 (9%)
Query: 41 GAKDVFSVPGDFNLTLLDHLIAEPELNLVGCCNELNAGYAADGYARSRG-VGACVVTFTV 99
G + VF PG L + D + + V +E A + ADGYARS G VG +VT
Sbjct: 18 GVEYVFGYPGGSVLDIYDAIHTLGGIEHVLVRHEQAAVHMADGYARSTGKVGCVLVTSGP 77
Query: 100 GGLSVLNAIAGAYSENLPVICIVGGPNSNDYGTNRILH-HTIGLPDFTQELRCFQAITCS 158
G + + IA AY++++P++ + G SN GT+ +G+ + +
Sbjct: 78 GATNAITGIATAYTDSVPLVILSGQVPSNLIGTDAFQECDMLGIS---------RPVVKH 128
Query: 159 QAVVNNLGDAHELIDTAISTA-LKESKPVYISISCNLPGIPHPTFARDPVPFFLAPKVSN 217
+V N D I A A PV I I ++ + P L
Sbjct: 129 SFIVKNAEDIPSTIKKAFYIASTGRPGPVVIDIPKDMVNPANKFTYEYPEEVSLRSYNPT 188
Query: 218 QLGLEAAVEATADFLNKAVKPVLVGGPNIRVAKAQKAFIELADATGYPIAIMPSGKGLVP 277
G + ++ L A KPVL G + A+ + + A P+ G G P
Sbjct: 189 VQGHKGQIKKALKALLVAKKPVLFVGGGVITAECSEQLTQFAQKLNLPVTSSLMGLGAYP 248
Query: 278 EHHPHFIGTYWGAVSSSFCGEIVESADAYVFVGPIFNDYSSVGYSLLIKKEKAIIVQPHR 337
F+G G + + +D + +G F+D ++ + K I +
Sbjct: 249 STDKQFLGML-GMHGTYEANNAMHESDLILGIGVRFDDRTTNNLAKYCPNAKVIHIDIDP 307
Query: 338 VTVGNG-----PSLGWV--FMADFLSALAKK-LRKNTTALEN-YRRIYVPPGIPVKR--A 386
++ P +G + +FLS L ++ L K+ T L +++I
Sbjct: 308 TSISKNVPAYIPIVGSAKNVLEEFLSLLEEENLAKSQTDLTAWWQQINEWKAKKCLEFDR 367
Query: 387 QNEPLRVNVLFKHIQDMLSGDTAVIAETGDS------WFNCQKLRLPENCGYEFQMQYGS 440
++ ++ + + I + +GD V ++ G + K R N G G+
Sbjct: 368 TSDVIKPQQVVEAIYRLTNGDAYVASDVGQHQMFAALHYPFDKPRRWINSG-----GAGT 422
Query: 441 IGWSVGATLGYAQAAKDKRVIACIGDGSFQVTAQEISTMIRCGQRSIIFLINNGGYTIEV 500
+G+ + A +G A + V+ GDGS Q+ QE+ST + +I +NN +
Sbjct: 423 MGFGLPAAIGVKFAHPEATVVCVTGDGSIQMNIQELSTAKQYDIPVVIVSLNNRFLGMVK 482
Query: 501 EIHDGPYN-----VIKNW--DYTGLVNAI-HNGEGKCWTAKVRSEDELTEAMKTATGEQK 552
+ D Y+ V N D+ L A H G ++ + DEL E + A K
Sbjct: 483 QWQDLIYSGRHSQVYMNSLPDFAKLAEAYGHVG------IQIDTPDELEEKLTQAFS-IK 535
Query: 553 DSLCFIEVFV 562
D L F++V V
Sbjct: 536 DKLVFVDVNV 545
>gnl|CDD|236380 PRK09107, PRK09107, acetolactate synthase 3 catalytic subunit;
Validated.
Length = 595
Score = 63.2 bits (154), Expect = 2e-10
Identities = 70/263 (26%), Positives = 114/263 (43%), Gaps = 29/263 (11%)
Query: 35 RRLVEIGAKDVFSVPGDFNLTLLDHLIAEPELNLVGCCNELNAGYAADGYARSRG-VGAC 93
+ L + G + +F PG L + D + + ++ + +E AG+AA+GYARS G G
Sbjct: 19 QALKDQGVEHIFGYPGGAVLPIYDEIFQQDDIQHILVRHEQGAGHAAEGYARSTGKPGVV 78
Query: 94 VVTFTVGGLSVLNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCFQ 153
+VT G + + + A +++P++CI G ++ H IG F QE
Sbjct: 79 LVTSGPGATNAVTPLQDALMDSIPLVCITG----------QVPTHLIGSDAF-QECDTV- 126
Query: 154 AIT--CSQA--VVNNLGDAHELIDTAISTALK-ESKPVYISISCNL---PGIPHPTFARD 205
IT C++ +V ++ D +I A A PV + I ++ G P
Sbjct: 127 GITRPCTKHNWLVKDVNDLARVIHEAFHVATSGRPGPVVVDIPKDVQFATGTYTPPQKAP 186
Query: 206 PVPFFLAPKVSNQLG-LEAAVEATADFLNKAVKPVL-VGGPNIRVA-KAQKAFIELADAT 262
+ PKV + AVE A A +PV+ GG I +A + EL + T
Sbjct: 187 VHVSY-QPKVKGDAEAITEAVELLA----NAKRPVIYSGGGVINSGPEASRLLRELVELT 241
Query: 263 GYPIAIMPSGKGLVPEHHPHFIG 285
G+PI G G P +++G
Sbjct: 242 GFPITSTLMGLGAYPASGKNWLG 264
Score = 40.1 bits (94), Expect = 0.003
Identities = 21/55 (38%), Positives = 31/55 (56%)
Query: 439 GSIGWSVGATLGYAQAAKDKRVIACIGDGSFQVTAQEISTMIRCGQRSIIFLINN 493
G++G+ + A LG A D VI GD S Q+ QE+ST ++ IF++NN
Sbjct: 430 GTMGYGLPAALGVQIAHPDALVIDIAGDASIQMCIQEMSTAVQYNLPVKIFILNN 484
>gnl|CDD|213633 TIGR01504, glyox_carbo_lig, glyoxylate carboligase. Glyoxylate
carboligase, also called tartronate-semialdehyde
synthase, releases CO2 while synthesizing a single
molecule of tartronate semialdehyde from two molecules
of glyoxylate. It is a thiamine pyrophosphate-dependent
enzyme, closely related in sequence to the large subunit
of acetolactate synthase. In the D-glycerate pathway,
part of allantoin degradation in the Enterobacteriaceae,
tartronate semialdehyde is converted to D-glycerate and
then 3-phosphoglycerate, a product of glycolysis and
entry point in the general metabolism.
Length = 588
Score = 62.3 bits (151), Expect = 4e-10
Identities = 104/484 (21%), Positives = 179/484 (36%), Gaps = 59/484 (12%)
Query: 41 GAKDVFSVPGDFNLTLLDHLIAEPELNLVGCCNELNAGYAADGYARSRG--VGACVVTFT 98
G F VPG L A + + + A + A+GY R+ +G C+ T
Sbjct: 17 GITTAFGVPGAAINPFYSALKAHGGIRHILARHVEGASHMAEGYTRATAGNIGVCIGTSG 76
Query: 99 VGGLSVLNAIAGAYSENLPVICIVG-GPNSNDYGTNRILHHTIGLPDFTQELRCFQAITC 157
G ++ + A ++++P++CI G P + LH DF A
Sbjct: 77 PAGTDMITGLYSASADSIPILCITGQAPRA-------RLHKE----DFQAVDIAAIAKPV 125
Query: 158 SQAVVNNLGDAHELIDTAISTA---LKESKP----VYISISCNLPGIPHPTFARDPVPFF 210
S+ V A L+ + A ++ +P + + + I +P+P +
Sbjct: 126 SKMAVTVREAA--LVPRVLQQAFHLMRSGRPGPVLIDLPFDVQVAEIEFDPDTYEPLPVY 183
Query: 211 LAPKVSNQLGLEAAVEATADFLNKAVKPVLVGGPNIRVAKAQKAFIELADATGYPIAIMP 270
P + A +E + LN A +P++V G + A A E A+ TG P+
Sbjct: 184 -KPAAT-----RAQIEKAVEMLNAAERPLIVAGGGVINADAADLLQEFAELTGVPVIPTL 237
Query: 271 SGKGLVPEHHPHFIGTYWGAVSSSFCGEIVESADAYVFVGPIFNDYSSVGYSLLIKKEKA 330
G G +P+ H G S + + +D +G + + + + + K
Sbjct: 238 MGWGCIPDDHELMAGMVGLQTSHRYGNATLLESDFVFGIGNRWANRHTGSVDVYTEGRKF 297
Query: 331 IIVQPHRVTVGN--GPSLGWVFMADFLSALAKKLRKNTTALENYRRIYVPPGIPVKRAQ- 387
+ V +G P LG V +D +AL K L + L+ R+ Q
Sbjct: 298 VHVDIEPTQIGRVFAPDLGIV--SDAKAAL-KLLVEVAQELKKAGRLPDRSEW-AADCQQ 353
Query: 388 ------------NEPLRVNVLFKHIQDMLSGDTAVIAETGDS------WFNCQKLRLPEN 429
N P++ +++ + D + G S + K R N
Sbjct: 354 RKRTLLRKTHFDNVPVKPQRVYEEMNKAFGRDVCYVTTIGLSQIAGAQMLHVYKPRHWIN 413
Query: 430 CGYEFQMQYGSIGWSVGATLGYAQAAKDKRVIACIGDGSFQVTAQEISTMIRCGQRSIIF 489
CG Q G +GW++ A LG A + V+A GD FQ +E++ + I
Sbjct: 414 CG-----QAGPLGWTIPAALGVCAADPKRNVVALSGDYDFQFMIEELAVGAQHNIPYIHV 468
Query: 490 LINN 493
L+NN
Sbjct: 469 LVNN 472
>gnl|CDD|235629 PRK05858, PRK05858, hypothetical protein; Provisional.
Length = 542
Score = 61.7 bits (150), Expect = 5e-10
Identities = 61/260 (23%), Positives = 108/260 (41%), Gaps = 26/260 (10%)
Query: 30 GRHLARRLVEIGAKDVFSVPGDFNLTLLDHLIAEPELNLVGCCNELNAGYAADGYAR-SR 88
GR ARRL G +F++ G L D E + L+ +E A +AA+ +A+ +R
Sbjct: 8 GRLAARRLKAHGVDTMFTLSGGHLFPLYDGAREE-GIRLIDVRHEQTAAFAAEAWAKLTR 66
Query: 89 GVGACVVTFTVGGLSVLNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQE 148
G V+T G + ++A+A A P++ + G + +G + QE
Sbjct: 67 VPGVAVLTAGPGVTNGMSAMAAAQFNQSPLVVLGGRAPALRWGMGSL-----------QE 115
Query: 149 LR---CFQAITCSQAVVNNLGDAHELIDTAISTALK-ESKPVYISISCNLPGIPHPTFAR 204
+ +T A + +A L+D A+ A+ PV++ + F+
Sbjct: 116 IDHVPFVAPVTKFAATAQSAENAGRLVDQALQAAVTPHRGPVFVDFPMDH------AFSM 169
Query: 205 DPVPFFLAPKVSNQLGLEA---AVEATADFLNKAVKPVLVGGPNIRVAKAQKAFIELADA 261
G A+ A L +A +PV++ G ++ A+ A + LA+
Sbjct: 170 ADDDGRPGALTELPAGPTPDPDALARAAGLLAEAQRPVIMAGTDVWWGHAEAALLRLAEE 229
Query: 262 TGYPIAIMPSGKGLVPEHHP 281
G P+ + G+G+VP HP
Sbjct: 230 LGIPVLMNGMGRGVVPADHP 249
Score = 33.9 bits (78), Expect = 0.25
Identities = 17/58 (29%), Positives = 31/58 (53%), Gaps = 4/58 (6%)
Query: 446 GATLGYAQAAK----DKRVIACIGDGSFQVTAQEISTMIRCGQRSIIFLINNGGYTIE 499
G GYA AA+ ++V+ GDG+F + ++ T++R + + NNG + +E
Sbjct: 410 GTGPGYALAARLARPSRQVVLLQGDGAFGFSLMDVDTLVRHNLPVVSVIGNNGIWGLE 467
>gnl|CDD|226469 COG3960, COG3960, Glyoxylate carboligase [General function
prediction only].
Length = 592
Score = 61.4 bits (149), Expect = 6e-10
Identities = 99/455 (21%), Positives = 170/455 (37%), Gaps = 73/455 (16%)
Query: 77 AGYAADGYARSR--GVGACVVTFTVGGLSVLNAIAGAYSENLPVICIVG-GP----NSND 129
A + A+GY R+ +G C+ T G ++ + A ++++P++CI G P + D
Sbjct: 54 ASHMAEGYTRATAGNIGVCIGTSGPAGTDMITGLYSASADSIPILCITGQAPRARLHKED 113
Query: 130 YGTNRILHHTIGLPDFTQELRCFQAITCSQA--VVNNLGDAHELIDTAISTALKESKPVY 187
+ I I P A+T + V L A L+ + PV
Sbjct: 114 FQAVDI--EAIAKPVSKW------AVTVREPALVPRVLQQAFHLMRSG------RPGPVL 159
Query: 188 ISI--SCNLPGIPHPTFARDPVPFFLAPKVSNQLGLEAAVEATADFLNKAVKPVLVGGPN 245
I + + I +P+P + P + E L +A +P++V G
Sbjct: 160 IDLPFDVQVAEIEFDPDMYEPLPVY-KPAAT-----RVQAEKALAMLIQAERPLIVAGGG 213
Query: 246 IRVAKAQKAFIELADATGYPIAIMPSGKGLVPEHHPHFIGTYWGAVSSSFCGEIVESADA 305
+ A A E A+ TG P+ G G +P+ HP G S + + ++D
Sbjct: 214 VINADAAALLQEFAELTGVPVIPTLMGWGCIPDDHPLMAGMVGLQTSHRYGNATLLASDM 273
Query: 306 YVFVGPIFNDYSSVGYSLLIKKEKAIIVQPHRVTVGN--GPSLGWVFMADFLSAL----- 358
+G + + + + + K I V +G P LG V +D +AL
Sbjct: 274 VFGIGNRWANRHTGSVEVYTEGRKFIHVDIEPTQIGRVFCPDLGIV--SDAKAALTLLLD 331
Query: 359 -------AKKLRKNTTALENYRRIYVPPGIPVKRA-------QNEPLRVNVLFKHIQDML 404
A KL + + ++ KR N P++ +++ +
Sbjct: 332 VAQEWKKAGKLPCRKAWVADCQQ--------RKRTLLRKTHFDNVPVKPQRVYEEMNKAF 383
Query: 405 SGDTAVIAETGDS------WFNCQKLRLPENCGYEFQMQYGSIGWSVGATLGYAQAAKDK 458
D + G S + + K R NCG Q G +GW++ A LG A +
Sbjct: 384 GRDVCYVTTIGLSQIAAAQFLHVFKPRHWINCG-----QAGPLGWTIPAALGVCAADPKR 438
Query: 459 RVIACIGDGSFQVTAQEISTMIRCGQRSIIFLINN 493
V+A GD FQ +E++ + I L+NN
Sbjct: 439 NVVAISGDYDFQFLIEELAVGAQFKIPYIHVLVNN 473
>gnl|CDD|236041 PRK07524, PRK07524, hypothetical protein; Provisional.
Length = 535
Score = 60.4 bits (147), Expect = 1e-09
Identities = 75/266 (28%), Positives = 114/266 (42%), Gaps = 27/266 (10%)
Query: 28 TLGRHLARRLVEIGAKDVFSVPGDFNLTLLDHLIAEPELNLVGCCNELNAGYAADGYARS 87
T G L R L G + VF +PG + L L + V +E AG+ ADGYAR
Sbjct: 3 TCGEALVRLLEAYGVETVFGIPGVHTVELYRGLAGSG-IRHVTPRHEQGAGFMADGYARV 61
Query: 88 RG-VGACVVTFTVGGLSVLNAIAGAYSENLPVICIVGGPNSNDYGTNR-ILHHTIGLPDF 145
G G C + G ++ A+ AY++++P++ I G R LH LPD
Sbjct: 62 SGKPGVCFIITGPGMTNIATAMGQAYADSIPMLVISSVNRRASLGKGRGKLHE---LPD- 117
Query: 146 TQELRCFQAITCSQAVVNNLGDAHELIDTAISTALKES---KPVYISISCNL--PGIPHP 200
+ + + + D E++ A A+ +S +PV+I I ++ H
Sbjct: 118 --QRAMVAGVAAFSHTLMSAEDLPEVLARAF--AVFDSARPRPVHIEIPLDVLAAPADHL 173
Query: 201 TFARDPVPFFLAPKVSNQLGLEAAVEATADFLNKAVKPV-LVGGPNIRVAKAQKAFIELA 259
A P P AA+ A+ L A +P+ L GG + A A +A E
Sbjct: 174 LPAPPTRPARPGPA-------PAALAQAAERLAAARRPLILAGGGALAAAAALRALAERL 226
Query: 260 DATGYPIAIMPSGKGLVPEHHPHFIG 285
DA P+A+ + KGL+P HP +G
Sbjct: 227 DA---PVALTINAKGLLPAGHPLLLG 249
Score = 51.5 bits (124), Expect = 9e-07
Identities = 35/131 (26%), Positives = 56/131 (42%), Gaps = 18/131 (13%)
Query: 438 YGSIGWSVGATLGYAQAAKDKRVIACIGDGSFQVTAQEISTMIRCGQRSIIFLINNGGYT 497
YG++G+ + A +G A A ++ V+ +GDG Q T E+++ + I+ L NN GY
Sbjct: 406 YGTLGYGLPAAIGAALGAPERPVVCLVGDGGLQFTLPELASAVEADLPLIVLLWNNDGYG 465
Query: 498 IEVEIHD-------GPYNV-IKNWDYTGLVNAIHNGEGKCWTAKVRSEDELTEAMKTATG 549
EI P V D+ L A C +V ++L A++ A
Sbjct: 466 ---EIRRYMVARDIEPVGVDPYTPDFIALARAFG-----CAAERVADLEQLQAALRAAF- 516
Query: 550 EQKDSLCFIEV 560
+ IEV
Sbjct: 517 -ARPGPTLIEV 526
>gnl|CDD|181458 PRK08527, PRK08527, acetolactate synthase 3 catalytic subunit;
Validated.
Length = 563
Score = 60.5 bits (147), Expect = 1e-09
Identities = 132/589 (22%), Positives = 226/589 (38%), Gaps = 127/589 (21%)
Query: 37 LVEIGAKDVFSVPGDFNLTLLDHLIAEPELNLVGCCNELNAGYAADGYARSRG-VGACVV 95
L E G K VF PG L + D + + + +E A +AADGYAR+ G VG +V
Sbjct: 13 LKEEGVKVVFGYPGGAILNIYDEIYKQNYFKHILTRHEQAAVHAADGYARASGKVGVAIV 72
Query: 96 TFTVGGLSVLNAIAGAYSENLPVICIVGG-PNSNDYGTNRILHHTIGLPDFTQELRCFQA 154
T G + + +A AY +++P++ I G PNS IG F QE+ A
Sbjct: 73 TSGPGFTNAVTGLATAYMDSIPLVLISGQVPNS-----------LIGTDAF-QEI---DA 117
Query: 155 ITCSQA------VVNNLGDAHELIDTAISTALKESK-PVYISISCNLPG----------I 197
+ S+ +V ++ + ++ A A PV+I I ++ I
Sbjct: 118 VGISRPCVKHNYLVKSIEELPRILKEAFYIARSGRPGPVHIDIPKDVTATLGEFEYPKEI 177
Query: 198 PHPTFARDPVPFFLAPKVS-NQLGLEAAVEATADFLNKAVKPVLVGGPNIRVAKAQKAFI 256
T+ P N ++ A EA + +A KP+ G ++ A +
Sbjct: 178 SLKTY---------KPTYKGNSRQIKKAAEA----IKEAKKPLFYLGGGAILSNASEEIR 224
Query: 257 ELADATGYPIAIMPSGKGLVPEHHPHFIGTYWGAVSSSFCGEIVES-ADAYVFVGPIFND 315
EL TG P +G++ P +G + S+ + S D + +G F+D
Sbjct: 225 ELVKKTGIPAVETLMARGVLRSDDPLLLGML--GMHGSYAANMAMSECDLLISLGARFDD 282
Query: 316 YSSVGYSLLIKKEKAI-----------IVQPHRVTVGNGPSLGWVFMADFLSALAKKLRK 364
+ S K K I IV VG+ ++ + + L L ++
Sbjct: 283 RVTGKLSEFAKHAKIIHVDIDPSSISKIVNADYPIVGDLKNV----LKEMLEELKEENPT 338
Query: 365 NTTA----LENYRRIYVPPGIPVK-RAQNEPLRVNVLFKHIQDMLSGDTAVIA-ETGDSW 418
L+ Y ++ P+ +E L+ + + + ++L GD A+I+ + G
Sbjct: 339 TYKEWREILKRYNELH-----PLSYEDSDEVLKPQWVIERVGELL-GDDAIISTDVG--- 389
Query: 419 FNCQKLRLPENCGYEFQM---QY---------------GSIGWSVGATLGYAQAAKDKRV 460
+ QM Q+ G++G+ + A LG A DK V
Sbjct: 390 --------------QHQMWVAQFYPFNYPRQLATSGGLGTMGYGLPAALGAKLAVPDKVV 435
Query: 461 IACIGDGSFQVTAQEISTMIRCGQRSIIFLINNG-------GYTIEVEIHDGPYNVIKNW 513
I GDGS + QE+ T + I ++NN T E ++
Sbjct: 436 INFTGDGSILMNIQELMTAVEYKIPVINIILNNNFLGMVRQWQTFFYEERYSETDLSTQP 495
Query: 514 DYTGLVNAIHNGEGKCWTAKVRSEDELTEAMKTATGEQKDSLCFIEVFV 562
D+ L + G G +V +++E +A+K A + D + I+V +
Sbjct: 496 DFVKLAESFG-GIG----FRVTTKEEFDKALKEAL--ESDKVALIDVKI 537
>gnl|CDD|213733 TIGR02720, pyruv_oxi_spxB, pyruvate oxidase. Members of this
family are examples of pyruvate oxidase (EC 1.2.3.3), an
enzyme with FAD and TPP as cofactors that catalyzes the
reaction pyruvate + phosphate + O2 + H2O = acetyl
phosphate + CO2 + H2O2. It should not be confused with
pyruvate dehydrogenase [cytochrome] (EC 1.2.2.2) as in
E. coli PoxB, although the E. coli enzyme is closely
homologous and has pyruvate oxidase as an alternate name
[Energy metabolism, Aerobic].
Length = 575
Score = 60.6 bits (147), Expect = 1e-09
Identities = 95/466 (20%), Positives = 176/466 (37%), Gaps = 53/466 (11%)
Query: 41 GAKDVFSVPGDFNLTLLDHLIAEPE-LNLVGCCNELNAGYAADGYARSRG-VGACVVTFT 98
G ++ +PG + +D L AE + ++ + +E AA A+ G +G C +
Sbjct: 13 GVDHIYGIPGGSFNSTMDALSAERDRIHYIQVRHEEVGALAAAADAKLTGKIGVCFGSAG 72
Query: 99 VGGLSVLNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQELR---CFQAI 155
G +LN + A +++PV+ +VG T + D QE+ + +
Sbjct: 73 PGATHLLNGLYDAKEDHVPVLALVG-----QVPTTGMNM------DTFQEMNENPIYADV 121
Query: 156 TCSQAVVNNLGDAHELIDTAISTALKESKPVYISISCNLPGIPHP----TFARDPVPFFL 211
+ID AI A + ++I + P + L
Sbjct: 122 AVYNRTAMTAESLPHVIDEAIRRAYAHNGVAVVTIPVDFGWQEIPDNDYYASSVSYQTPL 181
Query: 212 APKVSNQLGLEAAVEATADFLNKAVKPVLVGGPNIRVAKAQKAFIELADATGYPIAIMPS 271
P + AV L A +PV+ G R KA + L++ P+
Sbjct: 182 LPAPDVE-----AVTRAVQTLKAAERPVIYYGIGAR--KAGEELEALSEKLKIPLISTGL 234
Query: 272 GKGLVPEHHPHFIGTYWGAVSSSFCGEIVESADAYVFVGPIFNDYSSVGYSLLIKKEKAI 331
KG++ + +P ++G+ V+ E + AD +FVG N+Y S K K
Sbjct: 235 AKGIIEDRYPAYLGSA-YRVAQKPANEALFQADLVLFVG---NNYPFAEVSKAFKNTKYF 290
Query: 332 I---VQPHRVTVGNGPSLGWVFMADFLSALAKKL------------RKNTTALENYRRIY 376
I + P + +G +AD ALA L + N ++N+R Y
Sbjct: 291 IQIDIDPAK--LGKRHHTDIAVLADAKKALAAILAQVEPRESTPWWQANVANVKNWRA-Y 347
Query: 377 VPPGIPVKRAQNEPLRVNVLFKHIQDMLSGDTAVIAETGDSWFNCQK-LRLPENCGYEFQ 435
+ ++ PL+ +++ I + D + GD N + L++ +
Sbjct: 348 LA---SLEDKTEGPLQAYQVYRAINKIAEDDAIYSIDVGDININSNRHLKMTPKNKWITS 404
Query: 436 MQYGSIGWSVGATLGYAQAAKDKRVIACIGDGSFQVTAQEISTMIR 481
+ ++G V + D++V GDG+F +T Q++ T ++
Sbjct: 405 NLFATMGVGVPGAIAAKLNYPDRQVFNLAGDGAFSMTMQDLLTQVQ 450
>gnl|CDD|214363 CHL00099, ilvB, acetohydroxyacid synthase large subunit.
Length = 585
Score = 60.1 bits (146), Expect = 2e-09
Identities = 75/268 (27%), Positives = 110/268 (41%), Gaps = 39/268 (14%)
Query: 37 LVEIGAKDVFSVPGDFNLTLLDHLIAEPELNLVG---CCNELNAGYAADGYARSRG-VGA 92
LV G K +F PG L + D L A + L+ +E A +AADGYARS G VG
Sbjct: 20 LVRHGVKHIFGYPGGAILPIYDELYAWEKKGLIKHILVRHEQGAAHAADGYARSTGKVGV 79
Query: 93 CVVTFTVGGLSVLNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCF 152
C T G +++ IA A +++P++ I G GT D QE+ F
Sbjct: 80 CFATSGPGATNLVTGIATAQMDSVPLLVITGQVGRAFIGT-----------DAFQEVDIF 128
Query: 153 QAITCS----QAVVNNLGDAHELIDTAISTALK-ESKPVYISISCNL--------PGIPH 199
IT VV + D ++ A A PV I I ++ P P
Sbjct: 129 -GITLPIVKHSYVVRDARDISRIVAEAFYIAKHGRPGPVLIDIPKDVGLEKFDYYPPEPG 187
Query: 200 PTFARDP-VPFFLAPKVSNQLGLEAAVEATADFLNKAVKPVL-VGGPNIRVAKAQKAFIE 257
T + P ++ E A + ++ +P+L VGG I ++ A + E
Sbjct: 188 NTIIKILGCRPIYKPT-IKRI------EQAAKLILQSSQPLLYVGGGAI-ISDAHQEITE 239
Query: 258 LADATGYPIAIMPSGKGLVPEHHPHFIG 285
LA+ P+ GKG+ E HP +G
Sbjct: 240 LAELYKIPVTTTLMGKGIFDEDHPLCLG 267
Score = 44.3 bits (105), Expect = 1e-04
Identities = 21/57 (36%), Positives = 33/57 (57%), Gaps = 2/57 (3%)
Query: 439 GSIGWSVGATLGYAQAAKDKRVIACI-GDGSFQVTAQEISTMIRCGQRSIIFLINNG 494
G++G+ + A +G AQ A ++ CI GD SFQ+ QE+ T+ + I +INN
Sbjct: 430 GTMGYGLPAAIG-AQIAHPNELVICISGDASFQMNLQELGTIAQYNLPIKIIIINNK 485
>gnl|CDD|236098 PRK07789, PRK07789, acetolactate synthase 1 catalytic subunit;
Validated.
Length = 612
Score = 59.6 bits (145), Expect = 2e-09
Identities = 39/137 (28%), Positives = 60/137 (43%), Gaps = 5/137 (3%)
Query: 1 MDTANAMGSTGQPGSAPAPVRGGASVG----TLGRHLARRLVEIGAKDVFSVPGDFNLTL 56
+ AP V T + + R L E+G VF +PG L +
Sbjct: 1 PSPPTPAAAASAAPPPAAPAARPRIVAPERMTGAQAVVRSLEELGVDVVFGIPGGAILPV 60
Query: 57 LDHLIAEPELNLVGCCNELNAGYAADGYARSRG-VGACVVTFTVGGLSVLNAIAGAYSEN 115
D L ++ V +E AG+AA+GYA++ G VG C+ T G +++ IA A ++
Sbjct: 61 YDPLFDSTKVRHVLVRHEQGAGHAAEGYAQATGRVGVCMATSGPGATNLVTPIADANMDS 120
Query: 116 LPVICIVGGPNSNDYGT 132
+PV+ I G GT
Sbjct: 121 VPVVAITGQVGRGLIGT 137
Score = 43.4 bits (103), Expect = 3e-04
Identities = 25/61 (40%), Positives = 34/61 (55%), Gaps = 6/61 (9%)
Query: 439 GSIGWSVGATLGYAQAAKDKRVIACIGDGSFQVTAQEISTMIRCGQRSI---IFLINNGG 495
G++G++V A +G DK V A GDG FQ+T QE++T C I + LINNG
Sbjct: 447 GTMGYAVPAAMGAKVGRPDKEVWAIDGDGCFQMTNQELAT---CAIEGIPIKVALINNGN 503
Query: 496 Y 496
Sbjct: 504 L 504
Score = 41.1 bits (97), Expect = 0.001
Identities = 23/62 (37%), Positives = 32/62 (51%), Gaps = 2/62 (3%)
Query: 225 VEATADFLNKAVKPVL-VGGPNIRVAKAQKAFIELADATGYPIAIMPSGKGLVPEHHPHF 283
+ A + A +PVL VGG IR A+A ELA+ TG P+ +G P+ HP
Sbjct: 221 IREAAKLIAAARRPVLYVGGGVIR-AEASAELRELAELTGIPVVTTLMARGAFPDSHPQH 279
Query: 284 IG 285
+G
Sbjct: 280 LG 281
>gnl|CDD|131471 TIGR02418, acolac_catab, acetolactate synthase, catabolic.
Acetolactate synthase (EC 2.2.1.6) combines two
molecules of pyruvate to yield 2-acetolactate with the
release of CO2. This reaction may be involved in either
valine biosynthesis (biosynthetic) or conversion of
pyruvate to acetoin and possibly to 2,3-butanediol
(catabolic). The biosynthetic type, described by
TIGR00118, is also capable of forming
acetohydroxybutyrate from pyruvate and 2-oxobutyrate for
isoleucine biosynthesis. The family described here, part
of the same larger family of thiamine
pyrophosphate-dependent enzymes (pfam00205, pfam02776)
is the catabolic form, generally found associated with
in species with acetolactate decarboxylase and usually
found in the same operon. The model may not encompass
all catabolic acetolactate synthases, but rather one
particular clade in the larger TPP-dependent enzyme
family [Energy metabolism, Fermentation].
Length = 539
Score = 58.2 bits (141), Expect = 6e-09
Identities = 118/510 (23%), Positives = 195/510 (38%), Gaps = 80/510 (15%)
Query: 33 LARRLVEIGAKDVFSVPGDFNLTLLDHLIAEPELNLVGCCNELNAGYAADGYARSRG-VG 91
+ +L G + VF +PG + D L + + L+ +E NA + A R G G
Sbjct: 5 VVDQLENQGVRYVFGIPGAKIDRVFDAL-EDKGIELIVVRHEQNAAFMAQAVGRITGKPG 63
Query: 92 ACVVTFTVGGLSVLNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQELRC 151
+VT G +++ +A A SE PV+ I G D ++ H ++ +
Sbjct: 64 VALVTSGPGCSNLVTGLATANSEGDPVVAIGGQVKRAD--LLKLTHQSM------DNVAL 115
Query: 152 FQAITCSQAVVNNLGDAHELIDTAISTALKESKP--VYISISCNLPGIPHPTFARDPVPF 209
F+ IT A V + E++ A A + KP ++S+ ++ P A
Sbjct: 116 FRPITKYSAEVQDPDALSEVVANAFRAA-ESGKPGAAFVSLPQDVVDSPVSVKAIPASY- 173
Query: 210 FLAPKVSNQLGL--EAAVEATADFLNKAVKPVLVGGPNIRVAKAQKAFIELADATGYPIA 267
APK LG + A++ A+ + A PVL+ G + +A L T P+
Sbjct: 174 --APK----LGAAPDDAIDEVAEAIQNAKLPVLLLGLRASSPETTEAVRRLLKKTQLPVV 227
Query: 268 IMPSGKGLVP-EHHPHFIGTYWGAVSSSFCGEIVESADAYVFVGPIFNDYSSVGY--SLL 324
G G V E HF G G + +++ AD + +G Y + Y
Sbjct: 228 ETFQGAGAVSRELEDHFFGRV-GLFRNQPGDRLLKQADLVITIG-----YDPIEYEPRNW 281
Query: 325 IKKEKAIIV-------------QPHRVTVGNGPSLGWVFMADFLSALAKKLRKNTTALE- 370
+ A IV QP VG+ S D L+ AL
Sbjct: 282 NSENDATIVHIDVEPAQIDNNYQPDLELVGDIAS-----TLDLLAERIPGYELPPDALAI 336
Query: 371 -----NYRRIYVPPGIPVKRAQNEPLRVNVLFKHIQDMLSGDTAVIAETGD------SWF 419
R +K+A PL + K +Q +++ D V + G +F
Sbjct: 337 LEDLKQQREALDRVPATLKQAHLHPLE---IIKAMQAIVTDDVTVTVDMGSHYIWMARYF 393
Query: 420 NCQKLR--LPENCGYEFQMQYGSIG--WSVGATLGYAQAAKDKRVIACIGDGSFQVTAQE 475
+ R L N MQ + W++GA L +V++ GDG F ++ E
Sbjct: 394 RSYRARHLLISN-----GMQTLGVALPWAIGAALVRPNT----KVVSVSGDGGFLFSSME 444
Query: 476 ISTMIRCGQRSIIFLI-NNGGYTIEVEIHD 504
+ T +R + +I+ +I N+ GY + VE +
Sbjct: 445 LETAVRL-KLNIVHIIWNDNGYNM-VEFQE 472
>gnl|CDD|181344 PRK08273, PRK08273, thiamine pyrophosphate protein; Provisional.
Length = 597
Score = 56.5 bits (137), Expect = 3e-08
Identities = 119/502 (23%), Positives = 182/502 (36%), Gaps = 118/502 (23%)
Query: 28 TLGRHLARRLVEIGAKDVFSVPGDFNLTLLDHLI-AEPELNLVGCCNELNAGYAADGYAR 86
T+ + RL E G + VF PGD LL L A+ + V +E A + A +A+
Sbjct: 4 TVADFILERLREWGVRRVFGYPGDGINGLLGALGRADDKPEFVQARHEEMAAFMAVAHAK 63
Query: 87 -SRGVGACVVTFTVGGLSVLNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDF 145
+ VG C+ T G + +LN + A +++PV+ IVG G +
Sbjct: 64 FTGEVGVCLATSGPGAIHLLNGLYDAKLDHVPVVAIVGQQARAALGG-----------HY 112
Query: 146 TQELR------------CFQAITCSQAVVNNLGDAHELIDTAISTALKESKPVYISISCN 193
QE+ Q L+D A+ TAL E + + +
Sbjct: 113 QQEVDLQSLFKDVAGAFVQMVTVPEQ--------LRHLVDRAVRTALAERTVTAVILPND 164
Query: 194 LPGIPH--PTFARDPVPFFLAPKVSNQLGLEAAVEATADFLNKAVK-PVLVG-GPNIRVA 249
+ + + P A V + + + + A+ LN K +LVG G
Sbjct: 165 VQELEYEPPPHAHGTVHSGVGYTRPRVVPYDEDLRRAAEVLNAGRKVAILVGAG----AL 220
Query: 250 KAQKAFIELADATGYPIAIMPSGKGLVPEHHPHFIGT--YWGAVSSSFCGEIVESADAYV 307
A I +A+ G +A GK +P+ P G+ G S E++ D +
Sbjct: 221 GATDEVIAVAERLGAGVAKALLGKAALPDDLPWVTGSIGLLGTKPSY---ELMRECDTLL 277
Query: 308 FVGPIFNDYSSVGYSLLIKKE-KAIIVQ------------PHRVT-VGNGPSLGWVFMAD 353
VG SS YS + KE +A VQ P V VG+ A+
Sbjct: 278 MVG------SSFPYSEFLPKEGQARGVQIDIDGRMLGLRYPMEVNLVGDA--------AE 323
Query: 354 FLSALAKKLRKNT---------TALENYRRIYVPPGIPVKRAQNE-----PLRVNVLFKH 399
L AL L + + + RA P RV F
Sbjct: 324 TLRALLPLLERKKDRSWRERIEKWVARWWETL------EARAMVPADPVNPQRV---FWE 374
Query: 400 IQDMLSGDTAVIAETGDS--WFNCQKLRLPENCGYEFQMQYGSIGWSVG-ATLG----YA 452
+ L + + A++G W+ + LR+ M S+ S AT+G YA
Sbjct: 375 LSPRLPDNAILTADSGSCANWY-ARDLRMRRG------MM-ASL--SGTLATMGPAVPYA 424
Query: 453 QAAK----DKRVIACIGDGSFQ 470
AAK D+ VIA +GDG+ Q
Sbjct: 425 IAAKFAHPDRPVIALVGDGAMQ 446
>gnl|CDD|238961 cd02003, TPP_IolD, Thiamine pyrophosphate (TPP) family, IolD
subfamily, TPP-binding module; composed of proteins
similar to Rhizobium leguminosarum bv. viciae IolD. IolD
plays an important role in myo-inositol catabolism.
Length = 205
Score = 53.1 bits (128), Expect = 5e-08
Identities = 23/66 (34%), Positives = 36/66 (54%)
Query: 431 GYEFQMQYGSIGWSVGATLGYAQAAKDKRVIACIGDGSFQVTAQEISTMIRCGQRSIIFL 490
GY + Y +G+ + A LG A D+ V +GDGS+ + EI T ++ G + II L
Sbjct: 40 GYHLEYGYSCMGYEIAAGLGAKLAKPDREVYVLVGDGSYLMLHSEIVTAVQEGLKIIIVL 99
Query: 491 INNGGY 496
+N G+
Sbjct: 100 FDNHGF 105
>gnl|CDD|215261 PLN02470, PLN02470, acetolactate synthase.
Length = 585
Score = 54.4 bits (131), Expect = 1e-07
Identities = 82/316 (25%), Positives = 140/316 (44%), Gaps = 47/316 (14%)
Query: 16 APAPVRGGASVGTLGRHLARRLVEIGAKDVFSVPGDFNLTLLDHLIAEPELNLVGCCNEL 75
AP R GA + L L G VF+ PG ++ + L + V C +E
Sbjct: 8 APDEPRKGADI------LVEALEREGVDTVFAYPGGASMEIHQALTRSNCIRNVLCRHEQ 61
Query: 76 NAGYAADGYARSRG-VGACVVTFTVGGLSVLNAIAGAYSENLPVICIVGGPNSNDYGTNR 134
+AA+GYA++ G VG C+ T G +++ +A A +++P++ I G +
Sbjct: 62 GEVFAAEGYAKASGKVGVCIATSGPGATNLVTGLADALLDSVPLVAITG----------Q 111
Query: 135 ILHHTIGLPDFTQE---LRCFQAITCSQAVVNNLGDAHELIDTAISTALK-ESKPVYISI 190
+ IG F QE + ++IT +V ++ D +I A A PV + I
Sbjct: 112 VPRRMIGTDAF-QETPIVEVTRSITKHNYLVMDVEDIPRVIREAFFLASSGRPGPVLVDI 170
Query: 191 SCNLP---GIPHPTFARDPV--PFFLA--PKVSNQLGLEAAVEATADFLNKAVKPVL-VG 242
++ +P P+ P +L+ PK + LE V ++++ +PV+ VG
Sbjct: 171 PKDIQQQLAVP---NWNQPMKLPGYLSRLPKPPEKSQLEQIV----RLISESKRPVVYVG 223
Query: 243 GPNIRVAKAQKAFIELADATGYPIAIMPSGKGLVP---EHHPHFIGTYWGAVSSSFCGEI 299
G + ++ + F+EL TG P+A G G P E +G + G V +++
Sbjct: 224 GGCLNSSEELREFVEL---TGIPVASTLMGLGAFPASDELSLQMLGMH-GTVYANYA--- 276
Query: 300 VESADAYVFVGPIFND 315
V+SAD + G F+D
Sbjct: 277 VDSADLLLAFGVRFDD 292
Score = 36.6 bits (85), Expect = 0.035
Identities = 20/56 (35%), Positives = 32/56 (57%), Gaps = 2/56 (3%)
Query: 439 GSIGWSVGATLGYAQAAKDKRVIACIGDGSFQVTAQEISTMIRCGQRSI-IFLINN 493
G++G+ + A +G A A D V+ GDGSF + QE++T I + I ++NN
Sbjct: 426 GAMGFGLPAAIGAAAANPDAIVVDIDGDGSFIMNIQELAT-IHVENLPVKIMVLNN 480
>gnl|CDD|238973 cd02015, TPP_AHAS, Thiamine pyrophosphate (TPP) family,
Acetohydroxyacid synthase (AHAS) subfamily, TPP-binding
module; composed of proteins similar to the large
catalytic subunit of AHAS. AHAS catalyzes the
condensation of two molecules of pyruvate to give the
acetohydroxyacid, 2-acetolactate. 2-Acetolactate is the
precursor of the branched chain amino acids, valine and
leucine. AHAS also catalyzes the condensation of
pyruvate and 2-ketobutyrate to form
2-aceto-2-hydroxybutyrate in isoleucine biosynthesis. In
addition to requiring TPP and a divalent metal ion as
cofactors, AHAS requires FAD.
Length = 186
Score = 50.2 bits (121), Expect = 4e-07
Identities = 36/145 (24%), Positives = 59/145 (40%), Gaps = 36/145 (24%)
Query: 439 GSIGWSVGATLGYAQAAKDKRVIACI-GDGSFQVTAQEISTMIRCGQRSIIFLINNGGYT 497
G++G+ + A +G A DK VI CI GDGSFQ+ QE++T + I ++NNG
Sbjct: 50 GTMGFGLPAAIGAKVARPDKTVI-CIDGDGSFQMNIQELATAAQYNLPVKIVILNNG--- 105
Query: 498 IEVEIHDGPYNVIKNW-------DYTGLVNAIH----------NGEGKCWTAKVRSEDEL 540
G +++ W Y+ + +G +V +EL
Sbjct: 106 -----SLG---MVRQWQELFYEGRYSHTTLDSNPDFVKLAEAYGIKG----LRVEKPEEL 153
Query: 541 TEAMKTATGEQKDSLCFIEVFVHKD 565
A+K A ++V V +
Sbjct: 154 EAALKEALASDG--PVLLDVLVDPE 176
>gnl|CDD|132298 TIGR03254, oxalate_oxc, oxalyl-CoA decarboxylase. In a number of
bacteria, including Oxalobacter formigenes from the
human gut, a two-gene operon of oxc (oxalyl-CoA
decarboxylase) and frc (formyl-CoA transferase) encodes
a system for degrading and therefore detoxifying
oxalate. Members of this family are the thiamine
pyrophosphate (TPP)-containing enzyme oxalyl-CoA
decarboxylase [Cellular processes, Detoxification].
Length = 554
Score = 51.4 bits (123), Expect = 1e-06
Identities = 128/566 (22%), Positives = 212/566 (37%), Gaps = 101/566 (17%)
Query: 41 GAKDVFSVPGDFNLTLLDHLIAEPELNLVGCCNELNAGYAADGYA-RSRGVGACVVTFTV 99
G ++ V G +T L L + +G +E +AGYAA ++ G C+
Sbjct: 17 GINTIYGVVG-IPVTDLARLAQAKGMRYIGFRHEQSAGYAAAAAGFLTQKPGVCLTVSAP 75
Query: 100 GGLSVLNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLP--DFTQELRCFQAIT- 156
G L+ L A+A A + P+I I G S++ H + L D+ +E+ A
Sbjct: 76 GFLNGLTALANATTNCFPMIMISG---SSE-------RHIVDLQQGDY-EEMDQLAAAKP 124
Query: 157 -CSQAV-VNNLGDAHELIDTAISTALKESKP--VYISISCNLPGIPHPTFARDPVPFFLA 212
A V D I AI TA+ +P VY+ + + G +
Sbjct: 125 FAKAAYRVLRAEDIGIGIARAIRTAV-SGRPGGVYLDLPAAVLGQTMEAEKAKKTLVKVV 183
Query: 213 PKVSNQLGLEAAVEATADFLNKAVKPVLVGGPNIRVAKAQKAFIELADATGYPIAIMPSG 272
QL +V+ + L A +P+++ G A+A + E + TG P M
Sbjct: 184 DPAPKQLPSPDSVDRAVELLKDAKRPLILLGKGAAYAQADEEIREFVEKTGIPFLPMSMA 243
Query: 273 KGLVPEHHPHFIGTYWGAVSSSFCGEIVESADAYVFVGPIFNDYSSVGYSLLIKKEKAII 332
KGL+P+ HP + SF + AD + VG N S G L ++ I
Sbjct: 244 KGLLPDTHPQSAAA-----ARSF---ALAEADVVMLVGARLNWLLSHGKGKLWGEDAKFI 295
Query: 333 ---VQPHRV---------TVGNGPSL----------GWVFM-ADFLSAL----------- 358
++P + VG+ S+ G V AD+ +A+
Sbjct: 296 QVDIEPTEMDSNRPIAAPVVGDIGSVVQALLSAAKNGGVKPPADWRNAIKTKSEKNVAKM 355
Query: 359 AKKLRKNTTALENYRRIYVPPGIPVKRAQNEPLRVNVLFKHIQDMLSGDTAVIAETGDSW 418
A++L + + + + + E +R +VL + L + A + +
Sbjct: 356 AERLSASESPMNYHGAL-------------EAIR-DVLKDNPDIYLVNEGANTLDLARNV 401
Query: 419 FNCQKLRLPENCGYEFQMQYGSIGWSV-GATLGYAQAA---KDKRVIACIGDGSFQVTAQ 474
+ K R + G W V G +GYA AA K V+A GD +F +
Sbjct: 402 IDMYKPRHRLDVG----------TWGVMGIGMGYAIAAAVETGKPVVALEGDSAFGFSGM 451
Query: 475 EISTMIRCGQRSIIFLINNGGYTIEVEIH-----DGPYNVIKNWDYTGLVNAIHNGEGKC 529
E+ T+ R + + NNGG +++ P ++ Y ++ A G G
Sbjct: 452 EVETICRYNLPVCVVIFNNGGIYRGDDVNVVGADPAPTVLVHGARYDKMMKAF-GGVG-- 508
Query: 530 WTAKVRSEDELTEAMKTATGEQKDSL 555
V + DEL A+ A K +L
Sbjct: 509 --YNVTTPDELKAALNEALASGKPTL 532
>gnl|CDD|238968 cd02010, TPP_ALS, Thiamine pyrophosphate (TPP) family, Acetolactate
synthase (ALS) subfamily, TPP-binding module; composed
of proteins similar to Klebsiella pneumoniae ALS, a
catabolic enzyme required for butanediol fermentation.
ALS catalyzes the conversion of 2 molecules of pyruvate
to acetolactate and carbon dioxide. ALS does not contain
FAD, and requires TPP and a divalent metal cation for
activity.
Length = 177
Score = 48.8 bits (117), Expect = 1e-06
Identities = 19/57 (33%), Positives = 32/57 (56%), Gaps = 4/57 (7%)
Query: 444 SVGATLGYAQAAK----DKRVIACIGDGSFQVTAQEISTMIRCGQRSIIFLINNGGY 496
++G L A AK D++V+A GDG F + +QE+ T +R ++ + N+ GY
Sbjct: 49 TMGVALPGAIGAKLVYPDRKVVAVSGDGGFMMNSQELETAVRLKIPLVVLIWNDNGY 105
>gnl|CDD|236014 PRK07418, PRK07418, acetolactate synthase 3 catalytic subunit;
Reviewed.
Length = 616
Score = 50.0 bits (120), Expect = 2e-06
Identities = 78/266 (29%), Positives = 106/266 (39%), Gaps = 45/266 (16%)
Query: 41 GAKDVFSVPGDFNLTLLDHL-IAEPE--LNLVGCCNELNAGYAADGYARSRG-VGACVVT 96
G K +F PG L + D L AE E L + +E A +AADGYAR+ G VG C T
Sbjct: 33 GVKHIFGYPGGAILPIYDELYKAEAEGWLKHILVRHEQGAAHAADGYARATGKVGVCFGT 92
Query: 97 FTVGGLSVLNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCFQAIT 156
G +++ IA A +++P++ I G ++ IG F QE F IT
Sbjct: 93 SGPGATNLVTGIATAQMDSVPMVVITG----------QVPRPAIGTDAF-QETDIF-GIT 140
Query: 157 CS----QAVVNNLGDAHELIDTAISTALK-ESKPVYISI-------SCN----LPGIPHP 200
VV + D ++ A A PV I I + PG P
Sbjct: 141 LPIVKHSYVVRDPSDMARIVAEAFHIASSGRPGPVLIDIPKDVGQEEFDYVPVEPGSVKP 200
Query: 201 TFARDPVPFFLAPKVSNQLGLEAAVEATADFLNKAVKPVL-VGGPNIRVAKAQKAFIELA 259
R V G + A + +A +P+L VGG I A A ELA
Sbjct: 201 PGYRPTVK-----------GNPRQINAALKLIEEAERPLLYVGGGAI-SAGAHAELKELA 248
Query: 260 DATGYPIAIMPSGKGLVPEHHPHFIG 285
+ P+ GKG EHHP +G
Sbjct: 249 ERFQIPVTTTLMGKGAFDEHHPLSVG 274
Score = 38.5 bits (90), Expect = 0.009
Identities = 22/57 (38%), Positives = 33/57 (57%), Gaps = 2/57 (3%)
Query: 439 GSIGWSVGATLGYAQAAKDKRVIACI-GDGSFQVTAQEISTMIRCGQRSIIFLINNG 494
G++G+ + A +G A D+ VI CI GD SF + QE+ T+ + G +INNG
Sbjct: 434 GTMGFGMPAAMGVKVALPDEEVI-CIAGDASFLMNIQELGTLAQYGINVKTVIINNG 489
>gnl|CDD|238972 cd02014, TPP_POX, Thiamine pyrophosphate (TPP) family, Pyruvate
oxidase (POX) subfamily, TPP-binding module; composed of
proteins similar to Lactobacillus plantarum POX, which
plays a key role in controlling acetate production under
aerobic conditions. POX decarboxylates pyruvate,
producing hydrogen peroxide and the energy-storage
metabolite acetylphosphate. It requires FAD in addition
to TPP and a divalent cation as cofactors.
Length = 178
Score = 47.5 bits (114), Expect = 3e-06
Identities = 27/113 (23%), Positives = 45/113 (39%), Gaps = 15/113 (13%)
Query: 390 PLRVNVLFKHIQDMLSGDTAVIAETGDS--WFNCQKLRLPENCGYEFQMQYGSIGW--SV 445
P+ + + D + G+ W + LR+ Q S G ++
Sbjct: 1 PIHPERVAAELNKRAPDDAIFTIDVGNVTVWAA-RHLRMNGK-----QRFILS-GLLATM 53
Query: 446 GATLGYAQAAK----DKRVIACIGDGSFQVTAQEISTMIRCGQRSIIFLINNG 494
G L A AAK D++VIA GDG F + ++ T ++ I+ + NN
Sbjct: 54 GNGLPGAIAAKLAYPDRQVIALSGDGGFAMLMGDLITAVKYNLPVIVVVFNNS 106
>gnl|CDD|236063 PRK07586, PRK07586, hypothetical protein; Validated.
Length = 514
Score = 49.5 bits (119), Expect = 3e-06
Identities = 20/60 (33%), Positives = 27/60 (45%)
Query: 439 GSIGWSVGATLGYAQAAKDKRVIACIGDGSFQVTAQEISTMIRCGQRSIIFLINNGGYTI 498
G+IG + G A A D++V+A GDGS T Q + T R + N Y I
Sbjct: 385 GAIGQGLPLATGAAVACPDRKVLALQGDGSAMYTIQALWTQARENLDVTTVIFANRAYAI 444
Score = 34.0 bits (79), Expect = 0.20
Identities = 32/99 (32%), Positives = 42/99 (42%), Gaps = 15/99 (15%)
Query: 33 LARRLVEIGAKDVFSVPGDFNLTLLDHLIAEPELNLVGCCNELNAGYAADGYARSRGVGA 92
L R LV+ G F+ PG + + L P + V E A AADGYAR G A
Sbjct: 7 LVRTLVDGGVDVCFANPGTSEMHFVAALDRVPGMRCVLGLFEGVATGAADGYARMAGKPA 66
Query: 93 CVVTFTVGGLSVLNAIAGAYSENL--------PVICIVG 123
+ GL+ N +A NL P++ IVG
Sbjct: 67 ATLLHLGPGLA--NGLA-----NLHNARRARTPIVNIVG 98
>gnl|CDD|181185 PRK07979, PRK07979, acetolactate synthase 3 catalytic subunit;
Validated.
Length = 574
Score = 48.7 bits (116), Expect = 6e-06
Identities = 31/90 (34%), Positives = 48/90 (53%), Gaps = 1/90 (1%)
Query: 35 RRLVEIGAKDVFSVPGDFNLTLLDHLIAEPELNLVGCCNELNAGYAADGYARSRG-VGAC 93
R L++ G K VF PG L + D L ++ V +E A + ADG AR+ G VG
Sbjct: 12 RSLIDQGVKQVFGYPGGAVLDIYDALHTVGGIDHVLVRHEQAAVHMADGLARATGEVGVV 71
Query: 94 VVTFTVGGLSVLNAIAGAYSENLPVICIVG 123
+VT G + + IA AY +++P++ + G
Sbjct: 72 LVTSGPGATNAITGIATAYMDSIPLVVLSG 101
Score = 39.8 bits (93), Expect = 0.003
Identities = 18/55 (32%), Positives = 32/55 (58%)
Query: 439 GSIGWSVGATLGYAQAAKDKRVIACIGDGSFQVTAQEISTMIRCGQRSIIFLINN 493
G++G+ + A LG A ++ V+ GDGS Q+ QE+ST ++ ++ +NN
Sbjct: 421 GTMGFGLPAALGVKMALPEETVVCVTGDGSIQMNIQELSTALQYELPVLVLNLNN 475
>gnl|CDD|236312 PRK08617, PRK08617, acetolactate synthase; Reviewed.
Length = 552
Score = 45.6 bits (109), Expect = 6e-05
Identities = 121/511 (23%), Positives = 195/511 (38%), Gaps = 105/511 (20%)
Query: 37 LVEIGAKDVFSVPG---D--FNLTLLDHLIAEPELNLVGCCNELNAGYAADGYARSRG-V 90
L+ G K VF +PG D F+ L D + PE L+ +E NA + A R G
Sbjct: 15 LINQGVKYVFGIPGAKIDRVFD-ALED---SGPE--LIVTRHEQNAAFMAAAIGRLTGKP 68
Query: 91 GACVVTFTVGGLSVLNAIAG---AYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQ 147
G +VT G V N G A +E PV+ I G D + H ++
Sbjct: 69 GVVLVT---SGPGVSNLATGLVTATAEGDPVVAIGGQVKRADRL--KRTHQSMD----NV 119
Query: 148 ELRCFQAITCSQAVVNNLGDAHELIDTAISTALKESKP--VYISISCNLPGIPHPTFARD 205
L F+ IT A V + + E++ A A + +P ++S+ ++ P
Sbjct: 120 AL--FRPITKYSAEVQDPDNLSEVLANAFRAA-ESGRPGAAFVSLPQDVVDAP----VTS 172
Query: 206 PVPFFLAPKVSNQLGL--EAAVEATADFLNKAVKPVLVGGPNIRVAKAQKAFIELADATG 263
+AP +LG + A+ + A PVL+ G + A L + T
Sbjct: 173 KA---IAPLSKPKLGPASPEDINYLAELIKNAKLPVLLLGMRASSPEVTAAIRRLLERTN 229
Query: 264 YPIAIMPSGKGLVP-EHHPHFIGTYWGAVSSSFCGEIVESADAYVFVGPIFNDYSSVGY- 321
P+ G++ E HF G G + E+++ AD + +G Y + Y
Sbjct: 230 LPVVETFQAAGVISRELEDHFFGRV-GLFRNQPGDELLKKADLVITIG-----YDPIEYE 283
Query: 322 -SLLIKKEKAIIV-------------QPHRVTVGNGPSLGWVFMA---DFLSALAKKLRK 364
+ A I+ QP R +G+ +A D L+ L
Sbjct: 284 PRNWNSEGDATIIHIDVLPAEIDNYYQPERELIGD--------IAATLDLLAEKLDGLSL 335
Query: 365 NTTALE------NYRRIYVPPGIPVKRAQNEPLRVNVLFKHIQDMLSGDTAVIAETGDS- 417
+ +LE ++ PLR+ + +QD+++ DT V + G
Sbjct: 336 SPQSLEILEELRAQLEELAERPARLEEGAVHPLRI---IRALQDIVTDDTTVTVDVGSHY 392
Query: 418 -W----FNCQKLR--LPENCGYEFQMQYGSIG----WSVGATLGYAQAAKDKRVIACIGD 466
W F + R L N G MQ ++G W++ A L K+V++ GD
Sbjct: 393 IWMARYFRSYEPRHLLFSN-G----MQ--TLGVALPWAIAAAL----VRPGKKVVSVSGD 441
Query: 467 GSFQVTAQEISTMIRCGQRSIIFLI-NNGGY 496
G F +A E+ T +R I+ +I N+G Y
Sbjct: 442 GGFLFSAMELETAVRLKLN-IVHIIWNDGHY 471
>gnl|CDD|183066 PRK11269, PRK11269, glyoxylate carboligase; Provisional.
Length = 591
Score = 43.4 bits (103), Expect = 3e-04
Identities = 21/63 (33%), Positives = 32/63 (50%)
Query: 223 AAVEATADFLNKAVKPVLVGGPNIRVAKAQKAFIELADATGYPIAIMPSGKGLVPEHHPH 282
A +E + LN A +P++V G + A A +E A+ TG P+ G G +P+ HP
Sbjct: 191 AQIEKALEMLNAAERPLIVAGGGVINADASDLLVEFAELTGVPVIPTLMGWGAIPDDHPL 250
Query: 283 FIG 285
G
Sbjct: 251 MAG 253
Score = 38.4 bits (90), Expect = 0.010
Identities = 19/48 (39%), Positives = 26/48 (54%), Gaps = 5/48 (10%)
Query: 429 NCGYEFQMQYGSIGWSVGATLGYAQAAKDKRVIACIGDGSFQVTAQEI 476
NCG Q G +GW++ A LG A D+ V+A GD FQ +E+
Sbjct: 414 NCG-----QAGPLGWTIPAALGVRAADPDRNVVALSGDYDFQFLIEEL 456
Score = 33.4 bits (77), Expect = 0.40
Identities = 24/97 (24%), Positives = 40/97 (41%), Gaps = 26/97 (26%)
Query: 41 GAKDVFSVPGDFNLTL---------LDHLIAEPELNLVGCCNELNAGYAADGYARSR--G 89
G F VPG + H++A + A + A+GY R+
Sbjct: 18 GVTTAFGVPGAAINPFYSAMRKHGGIRHILAR---------HVEGASHMAEGYTRATAGN 68
Query: 90 VGACVVTFTVGGLSVLNAIAGAYS---ENLPVICIVG 123
+G C+ T G + + I G YS +++P++CI G
Sbjct: 69 IGVCIGT---SGPAGTDMITGLYSASADSIPILCITG 102
>gnl|CDD|238971 cd02013, TPP_Xsc_like, Thiamine pyrophosphate (TPP) family,
Xsc-like subfamily, TPP-binding module; composed of
proteins similar to Alcaligenes defragrans
sulfoacetaldehyde acetyltransferase (Xsc). Xsc plays a
key role in the degradation of taurine, catalyzing the
desulfonation of 2-sulfoacetaldehyde into sulfite and
acetyl phosphate. This enzyme requires TPP and divalent
metal ions for activity.
Length = 196
Score = 41.3 bits (97), Expect = 5e-04
Identities = 22/79 (27%), Positives = 42/79 (53%), Gaps = 5/79 (6%)
Query: 403 MLSGDTAVIAETGDSWFNCQKLRLPENCGYEFQMQYGSIGWSVGATLGYAQAAKDKRVIA 462
++S D I +S+ +K R + + +G+ G+++ A +G AA D+ V+A
Sbjct: 22 IVSTDIGNICSVANSYLRFEKPR-----SFIAPLSFGNCGYALPAIIGAKAAAPDRPVVA 76
Query: 463 CIGDGSFQVTAQEISTMIR 481
GDG++ ++ EI T +R
Sbjct: 77 IAGDGAWGMSMMEIMTAVR 95
>gnl|CDD|235721 PRK06163, PRK06163, hypothetical protein; Provisional.
Length = 202
Score = 41.0 bits (96), Expect = 6e-04
Identities = 32/100 (32%), Positives = 47/100 (47%), Gaps = 13/100 (13%)
Query: 404 LSGDTAVIAETG----DSWFNCQKLRLPENCGYEFQMQYGSIGWSVGATLGYAQAAKDKR 459
L + AVI G D W Q+ P+N F M GS+G + LG A A +R
Sbjct: 26 LKDEEAVIGGIGNTNFDLWAAGQR---PQN----FYM-LGSMGLAFPIALGVALAQPKRR 77
Query: 460 VIACIGDGSFQVTAQEISTMIRCGQRSIIFLI-NNGGYTI 498
VIA GDGS + + T+ +++ ++ +NG Y I
Sbjct: 78 VIALEGDGSLLMQLGALGTIAALAPKNLTIIVMDNGVYQI 117
>gnl|CDD|238964 cd02006, TPP_Gcl, Thiamine pyrophosphate (TPP) family, Gcl
subfamily, TPP-binding module; composed of proteins
similar to Escherichia coli glyoxylate carboligase
(Gcl). E. coli glyoxylate carboligase, plays a key role
in glyoxylate metabolism where it catalyzes the
condensation of two molecules of glyoxylate to give
tartronic semialdehyde and carbon dioxide. This enzyme
requires TPP, magnesium ion and FAD as cofactors.
Length = 202
Score = 40.7 bits (95), Expect = 8e-04
Identities = 25/65 (38%), Positives = 35/65 (53%), Gaps = 5/65 (7%)
Query: 429 NCGYEFQMQYGSIGWSVGATLGYAQAAKDKRVIACIGDGSFQVTAQEISTMIRCGQRSII 488
NCG Q G +GW+V A LG A A D++V+A GD FQ +E++ + I
Sbjct: 52 NCG-----QAGPLGWTVPAALGVAAADPDRQVVALSGDYDFQFMIEELAVGAQHRIPYIH 106
Query: 489 FLINN 493
L+NN
Sbjct: 107 VLVNN 111
>gnl|CDD|236433 PRK09259, PRK09259, putative oxalyl-CoA decarboxylase; Validated.
Length = 569
Score = 41.5 bits (98), Expect = 0.001
Identities = 25/71 (35%), Positives = 35/71 (49%), Gaps = 3/71 (4%)
Query: 212 APKVSNQLGLEAAVEATADFLNKAVKPVLVGGPNIRVAKAQKAFIELADATGYPIAIMPS 271
AP QL AV+ D L KA +P+++ G A+A + E + TG P M
Sbjct: 193 APA---QLPAPEAVDRALDLLKKAKRPLIILGKGAAYAQADEQIREFVEKTGIPFLPMSM 249
Query: 272 GKGLVPEHHPH 282
KGL+P+ HP
Sbjct: 250 AKGLLPDTHPQ 260
Score = 33.0 bits (76), Expect = 0.47
Identities = 21/57 (36%), Positives = 29/57 (50%), Gaps = 4/57 (7%)
Query: 443 WSV-GATLGYAQAA---KDKRVIACIGDGSFQVTAQEISTMIRCGQRSIIFLINNGG 495
W V G +GYA AA K V+A GD +F + E+ T+ R + + NNGG
Sbjct: 423 WGVMGIGMGYAIAAAVETGKPVVAIEGDSAFGFSGMEVETICRYNLPVTVVIFNNGG 479
>gnl|CDD|236076 PRK07710, PRK07710, acetolactate synthase catalytic subunit;
Reviewed.
Length = 571
Score = 40.5 bits (95), Expect = 0.002
Identities = 67/261 (25%), Positives = 103/261 (39%), Gaps = 29/261 (11%)
Query: 33 LARRLVEIGAKDVFSVPGDFNLTLLDHLIAEPELNLVGCCNELNAGYAADGYARSRG-VG 91
L + VE+ +F PG L L D L + + + +E A +AA+GYAR G G
Sbjct: 26 LEKEGVEV----IFGYPGGAVLPLYDALY-DCGIPHILTRHEQGAIHAAEGYARISGKPG 80
Query: 92 ACVVTFTVGGLSVLNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQE--- 148
+ T G +V+ +A A ++LP++ G ++ G+ D QE
Sbjct: 81 VVIATSGPGATNVVTGLADAMIDSLPLVVFTGQVATSVIGS-----------DAFQEADI 129
Query: 149 LRCFQAITCSQAVVNNLGDAHELIDTAISTALK-ESKPVYISISCNLPGIPHPTFARD-- 205
+ +T V D +I A A PV I I ++ F D
Sbjct: 130 MGITMPVTKHNYQVRKASDLPRIIKEAFHIATTGRPGPVLIDIPKDMVVE-EGEFCYDVQ 188
Query: 206 -PVPFFLAPKVSNQLGLEAAVEATADFLNKAVKPVLVGGPNIRVAKAQKAFIELADATGY 264
+P + N L + V+A + A KPV++ G + AKA K A+
Sbjct: 189 MDLPGYQPNYEPNLLQIRKLVQAVS----VAKKPVILAGAGVLHAKASKELTSYAEQQEI 244
Query: 265 PIAIMPSGKGLVPEHHPHFIG 285
P+ G G P HP F+G
Sbjct: 245 PVVHTLLGLGGFPADHPLFLG 265
Score = 40.5 bits (95), Expect = 0.003
Identities = 19/55 (34%), Positives = 33/55 (60%)
Query: 439 GSIGWSVGATLGYAQAAKDKRVIACIGDGSFQVTAQEISTMIRCGQRSIIFLINN 493
G++G+ + A +G A D+ V+A +GDG FQ+T QE+S + + ++NN
Sbjct: 424 GTMGFGLPAAIGAQLAKPDETVVAIVGDGGFQMTLQELSVIKELSLPVKVVILNN 478
>gnl|CDD|232855 TIGR00173, menD,
2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-
carboxylic-acid synthase. MenD was thought until
recently to act as SHCHC synthase, but has recently been
shown to act instead as SEPHCHC synthase. Conversion of
SEPHCHC into SHCHC and pyruvate may occur spontaneously
but is catalyzed efficiently, at least in some
organisms, by MenH (see TIGR03695). 2-oxoglutarate
decarboxylase/SHCHC synthase (menD) is a thiamine
pyrophosphate enzyme involved in menaquinone
biosynthesis [Biosynthesis of cofactors, prosthetic
groups, and carriers, Menaquinone and ubiquinone].
Length = 430
Score = 39.9 bits (94), Expect = 0.003
Identities = 67/286 (23%), Positives = 108/286 (37%), Gaps = 53/286 (18%)
Query: 29 LGRHLARRLVEIGAKDVFSVPGDFN--LTLLDHLIAEPELNLVGCCNELNAGYAADGYAR 86
L LV +G + V PG + L L L P L + +E +AG+ A G A+
Sbjct: 1 WASVLVEELVRLGVRHVVISPGSRSTPLALA--LAEHPRLRVHVHIDERSAGFFALGLAK 58
Query: 87 SRGVGACVVTFTVGGLSVLN---AIAGAYSENLPVICI----------VGGPNSND---- 129
+ G VV T G +V N A+ AY +P+I + G + D
Sbjct: 59 ASGRPVAVVC-T-SGTAVANLLPAVIEAYYSGVPLIVLTADRPPELRGCGANQTIDQPGL 116
Query: 130 YGTNRILHHTIGLPDFTQELRCFQAITCSQAVVNNLGDAHELIDTAISTALKESK-PVYI 188
+G+ + LP+ + LR +D A++ A PV+I
Sbjct: 117 FGSYVRWSVDLPLPEADEPLR----------------YLRSTVDRAVAQAQGAPPGPVHI 160
Query: 189 SIS-------CNLPGIPHPTFARDPVPFFLAPKVSNQLGLEAAVEATADFLNKAVKPVLV 241
++ L P + R VP +++ D L +A + +++
Sbjct: 161 NVPFREPLYPDPLLQ-PLQPWLRSGVPTVSTGPPVLD---PESLDDLWDRLRQAKRGLII 216
Query: 242 GGPNIRVAKAQKAFIELADATGYPIAIMPSGKGLVPEHHPHFIGTY 287
GP + A+ +A LA+A G+P+ P GL HP I Y
Sbjct: 217 AGP-LAGAEDAEALAALAEALGWPLLADPLS-GLRGGPHPLVIDHY 260
>gnl|CDD|132920 cd07037, TPP_PYR_MenD, Pyrimidine (PYR) binding domain of
2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexadiene-1-
carboxylate synthase (MenD) and related proteins.
Thiamine pyrophosphate (TPP family), pyrimidine (PYR)
binding domain of
2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexadiene-1-
carboxylate (SEPHCHC) synthase (MenD) subfamily. The PYR
domain is found in many key metabolic enzymes which use
TPP (also known as thiamine diphosphate) as a cofactor.
TPP binds in the cleft formed by a PYR domain and a PP
domain. The PYR domain, binds the aminopyrimidine ring
of TPP, the PP domain binds the diphosphate residue. The
PYR and PP domains have a common fold, but do not share
strong sequence conservation. The PP domain is not
included in this sub-family. Most TPP-dependent enzymes
have the PYR and PP domains on the same subunit although
these domains can be alternatively arranged in the
primary structure. TPP-dependent enzymes are
multisubunit proteins, the smallest catalytic unit being
a dimer-of-active sites. Escherichia coli MenD (EcMenD)
is a homotetramer (dimer-of-homodimers), having two
active sites per homodimer lying between PYR and PP
domains of different subunits. EcMenD catalyzes a
Stetter-like conjugate addition of alpha-ketoglutarate
to isochorismate, leading to the formation of SEPHCHC
and carbon dioxide, this addition is the first committed
step in the biosynthesis of vitamin K2 (menaquinone).
Length = 162
Score = 37.5 bits (88), Expect = 0.007
Identities = 28/94 (29%), Positives = 42/94 (44%), Gaps = 9/94 (9%)
Query: 31 RHLARRLVEIGAKDVFSVPGDFN--LTLLDHLIAEPELNLVGCCNELNAGYAADGYARSR 88
+ L L +G +DV PG + L L PE L +E +A + A G A++
Sbjct: 1 QALVEELKRLGVRDVVISPGSRSAPLALA--AAEHPEFRLHVRVDERSAAFFALGLAKAS 58
Query: 89 GVGACVVTFTVGGLSVLN---AIAGAYSENLPVI 119
G VV T G +V N A+ AY +P++
Sbjct: 59 GRPVAVVC-T-SGTAVANLLPAVVEAYYSGVPLL 90
>gnl|CDD|181661 PRK09124, PRK09124, pyruvate dehydrogenase; Provisional.
Length = 574
Score = 38.4 bits (90), Expect = 0.011
Identities = 109/479 (22%), Positives = 174/479 (36%), Gaps = 81/479 (16%)
Query: 28 TLGRHLARRLVEIGAKDVFSVPGDFNLTLLDHLIAEPELNLVGCCNELNAGYAADGYARS 87
T+ ++A+ L + G K ++ V GD L D L + + +E A +AA A+
Sbjct: 4 TVADYIAKTLEQAGVKRIWGVTGDSLNGLSDSLRRMGTIEWMHTRHEEVAAFAAGAEAQL 63
Query: 88 RGVGA-CVVTFTVGGLSVLNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFT 146
G A C + G L ++N + + ++PV+ I I IG F
Sbjct: 64 TGELAVCAGSCGPGNLHLINGLFDCHRNHVPVLAIAA----------HIPSSEIGSGYFQ 113
Query: 147 ----QELRCFQAITCSQAV--VNNLGDAHELIDTAISTALKESKPVYISISCNLPG-IPH 199
QEL F+ CS V+N ++ A+ A+ + + PG +
Sbjct: 114 ETHPQEL--FR--ECSHYCELVSNPEQLPRVLAIAMRKAILNRGVAVVVL----PGDVAL 165
Query: 200 PTFARDPVPFFLAPKVSNQLGLEAAVEATADFLNKAVKPVLVGGPNIRVAKAQKAFIELA 259
P + E + A LN + L+ G A A + LA
Sbjct: 166 KPAPERATPHWYHAPQPVVTPAEEELRKLAALLNGSSNITLLCGSG--CAGAHDELVALA 223
Query: 260 DATGYPIAIMPSGKGLVPEHHPHFIG-TYWGAVSSSFCGEIVESADAYVFVG---PIFND 315
+ PI GK V +P+ +G T SS + + + D + +G P
Sbjct: 224 ETLKAPIVHALRGKEHVEYDNPYDVGMTGLIGFSSGY--HAMMNCDTLLMLGTDFPYRQF 281
Query: 316 YSSVGYSLLIKKEKAIIVQPHRVTVGNGPSLGW---VFMA------DFLSALAKKLRKNT 366
Y A I+Q N SLG V + L+AL L + T
Sbjct: 282 YP----------TDAKIIQIDI----NPGSLGRRSPVDLGLVGDVKATLAALLPLLEEKT 327
Query: 367 ------TALENYRRIYVP-PGIPVKRAQNEPLRVNVLFKHIQDMLSGDTAVIAETGDS-- 417
ALE+YR+ + V +P+ L + I + + D + G
Sbjct: 328 DRKFLDKALEHYRKARKGLDDLAVPSDGGKPIHPQYLARQISEFAADDAIFTCDVGTPTV 387
Query: 418 W------FNCQKLRLPENCGYEFQMQYGSIGWSVGATLGYAQAA-KDKRVIACIGDGSF 469
W N ++ RL G +GS+ ++ LG AQAA ++V+A GDG F
Sbjct: 388 WAARYLKMNGKR-RL---LG---SFNHGSMANAMPQALG-AQAAHPGRQVVALSGDGGF 438
>gnl|CDD|239468 cd03371, TPP_PpyrDC, Thiamine pyrophosphate (TPP) family, PpyrDC
subfamily, TPP-binding module; composed of proteins
similar to phosphonopyruvate decarboxylase (PpyrDC)
proteins. PpyrDC is a homotrimeric enzyme which
functions in the biosynthesis of C-P compounds such as
bialaphos tripeptide in Streptomyces hygroscopicus.
These proteins require TPP and divalent metal cation
cofactors.
Length = 188
Score = 36.5 bits (85), Expect = 0.017
Identities = 38/145 (26%), Positives = 56/145 (38%), Gaps = 24/145 (16%)
Query: 431 GYEFQMQYGSIGWSVGATLGYAQAAKDKRVIACIGDGSFQVTAQEISTMIRCGQRS---- 486
+F GS+G + LG A A D++V+ GDG+ + ++T G +
Sbjct: 41 AQDFLTV-GSMGHASQIALGIALARPDRKVVCIDGDGAALMHMGGLAT---IGGLAPANL 96
Query: 487 IIFLINNGGYTIEVEIHD---GPYNVIKNWDYTGLVNAIHNGEGKCWTAKVRSEDELTEA 543
I ++NNG HD G V + + A G + V S +EL A
Sbjct: 97 IHIVLNNG-------AHDSVGGQPTVSFDVSLPAIAKA--CGYRAVYE--VPSLEELVAA 145
Query: 544 MKTATGEQKDSLCFIEVFVHKDDTS 568
+ A D FIEV V S
Sbjct: 146 LAKAL--AADGPAFIEVKVRPGSRS 168
>gnl|CDD|239162 cd02761, MopB_FmdB-FwdB, The MopB_FmdB-FwdB CD contains the
molybdenum/tungsten formylmethanofuran dehydrogenases,
subunit B (FmdB/FwdB), and other related proteins.
Formylmethanofuran dehydrogenase catalyzes the first
step in methane formation from CO2 in methanogenic
archaea and some eubacteria. Members of this CD belong
to the molybdopterin_binding (MopB) superfamily of
proteins.
Length = 415
Score = 36.9 bits (86), Expect = 0.029
Identities = 18/43 (41%), Positives = 26/43 (60%), Gaps = 1/43 (2%)
Query: 221 LEAAVEATADFLNKAVKPVLVGGPNIRVAKAQKAFIELADATG 263
LE A+E A+ L +A +P+ G V +AQ+A IELA+ G
Sbjct: 56 LEEAIEKAAEILKEAKRPLFYGLGTT-VCEAQRAGIELAEKLG 97
>gnl|CDD|224076 COG1154, Dxs, Deoxyxylulose-5-phosphate synthase [Coenzyme
metabolism / Lipid metabolism].
Length = 627
Score = 34.5 bits (80), Expect = 0.20
Identities = 13/30 (43%), Positives = 19/30 (63%), Gaps = 4/30 (13%)
Query: 444 SVGATLGYAQAA----KDKRVIACIGDGSF 469
S+ A LG A+A +D+ V+A IGDG+
Sbjct: 120 SISAALGMAKARDLKGEDRNVVAVIGDGAL 149
>gnl|CDD|139002 PRK12474, PRK12474, hypothetical protein; Provisional.
Length = 518
Score = 33.7 bits (77), Expect = 0.30
Identities = 21/70 (30%), Positives = 31/70 (44%), Gaps = 1/70 (1%)
Query: 435 QMQYGSIGWSVGATLGYAQAAKDKRVIACIGDGSFQVTAQEISTMIRCGQRSIIFLINNG 494
+ GSIG + G A AA D++V+ GDG T Q + TM R + + N
Sbjct: 385 PLTGGSIGQGLPLAAGAAVAAPDRKVVCPQGDGGAAYTMQALWTMARENLDVTVVIFANR 444
Query: 495 GY-TIEVEIH 503
Y + E+
Sbjct: 445 SYAILNGELQ 454
Score = 30.6 bits (69), Expect = 2.3
Identities = 28/94 (29%), Positives = 39/94 (41%), Gaps = 5/94 (5%)
Query: 33 LARRLVEIGAKDVFSVPGDFNLTLLDHLIAEPELNLVGCCNELNAGYAADGYARSRGVGA 92
+ L+ G + F+ PG + + L P + V C E AADGY R G A
Sbjct: 11 VVDTLLNCGVEVCFANPGTSEMHFVAALDRVPRMRPVLCLFEGVVTGAADGYGRIAGKPA 70
Query: 93 CVVTFTVGGLSVLNAIA---GAYSENLPVICIVG 123
VT G + N +A A P++ IVG
Sbjct: 71 --VTLLHLGPGLANGLANLHNARRAASPIVNIVG 102
>gnl|CDD|222031 pfam13292, DXP_synthase_N, 1-deoxy-D-xylulose-5-phosphate synthase.
This family contains 1-deoxyxylulose-5-phosphate
synthase (DXP synthase), an enzyme which catalyzes the
thiamine pyrophosphoate-dependent acyloin condensation
reaction between carbon atoms 2 and 3 of pyruvate and
glyceraldehyde 3-phosphate, to yield 1-deoxy-D-
xylulose-5-phosphate, a precursor in the biosynthetic
pathway to isoprenoids, thiamine (vitamin B1), and
pyridoxol (vitamin B6).
Length = 272
Score = 32.7 bits (76), Expect = 0.41
Identities = 13/30 (43%), Positives = 18/30 (60%), Gaps = 4/30 (13%)
Query: 444 SVGATLGYAQAAK----DKRVIACIGDGSF 469
S+ A LG A+A D+ V+A IGDG+
Sbjct: 116 SISAALGMAKARDLKGEDRNVVAVIGDGAL 145
>gnl|CDD|132173 TIGR03129, one_C_dehyd_B, formylmethanofuran dehydrogenase subunit
B. Members of this largely archaeal protein family are
subunit B of the formylmethanofuran dehydrogenase.
Nomenclature in some bacteria may reflect inclusion of
the formyltransferase described by TIGR03119 as part of
the complex, and therefore call this protein
formyltransferase/hydrolase complex Fhc subunit C. Note
that this model does not distinguish tungsten (FwdB)
from molybdenum-containing (FmdB) forms of this enzyme.
Length = 421
Score = 33.0 bits (76), Expect = 0.41
Identities = 15/43 (34%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
Query: 221 LEAAVEATADFLNKAVKPVLVGGPNIRVAKAQKAFIELADATG 263
E A+E A+ L A +P++ G + +AQ+A +ELA+ G
Sbjct: 62 YEEAIEKAAEILKNAKRPLIYGWSSTSC-EAQRAGLELAEKLG 103
>gnl|CDD|238965 cd02007, TPP_DXS, Thiamine pyrophosphate (TPP) family, DXS
subfamily, TPP-binding module;
1-Deoxy-D-xylulose-5-phosphate synthase (DXS) is a
regulatory enzyme of the mevalonate-independent pathway
involved in terpenoid biosynthesis. Terpeniods are plant
natural products with important pharmaceutical activity.
DXS catalyzes a transketolase-type condensation of
pyruvate with D-glyceraldehyde-3-phosphate to form
1-deoxy-D-xylulose-5-phosphate (DXP) and carbon dioxide.
The formation of DXP leads to the formation of the
terpene precursor IPP (isopentyl diphosphate) and to the
formation of thiamine (vitamin B1) and pyridoxal
(vitamin B6).
Length = 195
Score = 32.1 bits (74), Expect = 0.43
Identities = 14/30 (46%), Positives = 18/30 (60%), Gaps = 4/30 (13%)
Query: 444 SVGATLGYAQAA----KDKRVIACIGDGSF 469
S+ A LG A A K ++VIA IGDG+
Sbjct: 80 SISAALGMAVARDLKGKKRKVIAVIGDGAL 109
>gnl|CDD|238966 cd02008, TPP_IOR_alpha, Thiamine pyrophosphate (TPP) family,
IOR-alpha subfamily, TPP-binding module; composed of
proteins similar to indolepyruvate ferredoxin
oxidoreductase (IOR) alpha subunit. IOR catalyzes the
oxidative decarboxylation of arylpyruvates, such as
indolepyruvate or phenylpyruvate, which are generated by
the transamination of aromatic amino acids, to the
corresponding aryl acetyl-CoA.
Length = 178
Score = 31.9 bits (73), Expect = 0.47
Identities = 14/28 (50%), Positives = 22/28 (78%)
Query: 442 GWSVGATLGYAQAAKDKRVIACIGDGSF 469
G S+G +G A+A++DK+V+A IGD +F
Sbjct: 54 GASIGVAIGMAKASEDKKVVAVIGDSTF 81
>gnl|CDD|183601 PRK12571, PRK12571, 1-deoxy-D-xylulose-5-phosphate synthase;
Provisional.
Length = 641
Score = 32.8 bits (75), Expect = 0.52
Identities = 12/29 (41%), Positives = 15/29 (51%)
Query: 440 SIGWSVGATLGYAQAAKDKRVIACIGDGS 468
SI ++G A D V+A IGDGS
Sbjct: 124 SISAALGFAKARALGQPDGDVVAVIGDGS 152
>gnl|CDD|132340 TIGR03297, Ppyr-DeCO2ase, phosphonopyruvate decarboxylase. This
family consists of examples of phosphonopyruvate an
decarboxylase enzyme that produces phosphonoacetaldehyde
(Pald), the second step in the biosynthesis
phosphonate-containing compounds. Since the preceding
enzymate step, PEP phosphomutase (AepX, TIGR02320)
favors the substrate PEP energetically, the
decarboxylase is required to drive the reaction in the
direction of phosphonate production. Pald is a precursor
of natural products including antibiotics like bialaphos
and phosphonothricin in Streptomyces species,
phosphonate-modified molecules such as the
polysaccharide B of Bacteroides fragilis, the
phosphonolipids of Tetrahymena pyroformis, the
glycosylinositolphospholipids of Trypanosoma cruzi. This
gene generally occurs in prokaryotic organisms adjacent
to the gene for AepX. Most often an aminotansferase
(aepZ) is also present which leads to the production of
the most common phosphonate compound,
2-aminoethylphosphonate (AEP).
Length = 361
Score = 32.3 bits (74), Expect = 0.62
Identities = 37/136 (27%), Positives = 58/136 (42%), Gaps = 18/136 (13%)
Query: 434 FQMQYGSIGWSVGATLGYAQAAKDKRVIACIGDGSFQVTAQEISTMIRCGQRSII-FLIN 492
F GS+G + LG A A D+RV+ GDG+ + ++T+ G ++I L N
Sbjct: 217 FLTV-GSMGHASQIALGLALARPDQRVVCLDGDGAALMHMGGLATIGTQGPANLIHVLFN 275
Query: 493 NGGYTIEVEIHD---GPYNVIKNWDYTGLVNAIHNGEGKCWTAKVRSEDELTEAMKTATG 549
NG HD G V ++ D+ + A G +V + +EL A+ A+
Sbjct: 276 NG-------AHDSVGGQPTVSQHLDFAQIAKAC----GYAKVYEVSTLEELETALTAASS 324
Query: 550 EQKDSLCFIEVFVHKD 565
+ IEV V
Sbjct: 325 A--NGPRLIEVKVRPG 338
>gnl|CDD|223960 COG1029, FwdB, Formylmethanofuran dehydrogenase subunit B [Energy
production and conversion].
Length = 429
Score = 32.0 bits (73), Expect = 0.97
Identities = 25/89 (28%), Positives = 42/89 (47%), Gaps = 6/89 (6%)
Query: 222 EAAVEATADFLNKAVKPVLVGGPNIRVAKAQKAFIELADATGYPIAIMPSGKGLVPEHHP 281
+ A+E A+ L A +P+L G + +AQ+ IELA+ G A++ S + H P
Sbjct: 66 DEAIEKAAEILVNAKRPLLYGWSST-SCEAQELGIELAEKLG---AVIDSNASVC--HGP 119
Query: 282 HFIGTYWGAVSSSFCGEIVESADAYVFVG 310
+ ++ GE+ AD V+ G
Sbjct: 120 SVLALQEAGKPTATLGEVKNRADVIVYWG 148
>gnl|CDD|215720 pfam00106, adh_short, short chain dehydrogenase. This family
contains a wide variety of dehydrogenases.
Length = 167
Score = 31.0 bits (71), Expect = 1.1
Identities = 11/24 (45%), Positives = 13/24 (54%), Gaps = 2/24 (8%)
Query: 22 GGASVGTLGRHLARRLVEIGAKDV 45
GG G LG LAR L GA+ +
Sbjct: 7 GGT--GGLGLALARWLAAEGARHL 28
>gnl|CDD|187655 cd08952, KR_1_SDR_x, ketoreductase (KR), subgroup 1, complex (x)
SDRs. Ketoreductase, a module of the multidomain
polyketide synthase (PKS), has 2 subdomains, each
corresponding to a SDR family monomer. The C-terminal
subdomain catalyzes the NADPH-dependent reduction of the
beta-carbonyl of a polyketide to a hydroxyl group, a
step in the biosynthesis of polyketides, such as
erythromycin. The N-terminal subdomain, an interdomain
linker, is a truncated Rossmann fold which acts to
stabilizes the catalytic subdomain. Unlike typical SDRs,
the isolated domain does not oligomerize but is composed
of 2 subdomains, each resembling an SDR monomer. The
active site resembles that of typical SDRs, except that
the usual positions of the catalytic Asn and Tyr are
swapped, so that the canonical YXXXK motif changes to
YXXXN. Modular PKSs are multifunctional structures in
which the makeup recapitulates that found in (and may
have evolved from) FAS. Polyketide synthesis also
proceeds via the addition of 2-carbon units as in fatty
acid synthesis. The complex SDR NADP-binding motif,
GGXGXXG, is often present, but is not strictly conserved
in each instance of the module. This subfamily includes
KR domains found in many multidomain PKSs, including six
of seven Sorangium cellulosum PKSs (encoded by
spiDEFGHIJ) which participate in the synthesis of the
polyketide scaffold of the cytotoxic spiroketal
polyketide spirangien. These seven PKSs have either a
single PKS module (SpiF), two PKR modules
(SpiD,-E,-I,-J), or three PKS modules (SpiG,-H). This
subfamily includes the single KR domain of SpiF, the
first KR domains of SpiE,-G,H,-I,and #J, the third KR
domain of SpiG, and the second KR domain of SpiH. The
second KR domains of SpiE,-G, I, and #J, and the KR
domains of SpiD, belong to a different KR_FAS_SDR
subfamily. SDRs are a functionally diverse family of
oxidoreductases that have a single domain with a
structurally conserved Rossmann fold (alpha/beta folding
pattern with a central beta-sheet), an NAD(P)(H)-binding
region, and a structurally diverse C-terminal region.
Classical SDRs are typically about 250 residues long,
while extended SDRs are approximately 350 residues.
Sequence identity between different SDR enzymes are
typically in the 15-30% range, but the enzymes share the
Rossmann fold NAD-binding motif and characteristic
NAD-binding and catalytic sequence patterns. These
enzymes catalyze a wide range of activities including
the metabolism of steroids, cofactors, carbohydrates,
lipids, aromatic compounds, and amino acids, and act in
redox sensing. Classical SDRs have an TGXXX[AG]XG
cofactor binding motif and a YXXXK active site motif,
with the Tyr residue of the active site motif serving as
a critical catalytic residue (Tyr-151, human
prostaglandin dehydrogenase (PGDH) numbering). In
addition to the Tyr and Lys, there is often an upstream
Ser (Ser-138, PGDH numbering) and/or an Asn (Asn-107,
PGDH numbering) contributing to the active site; while
substrate binding is in the C-terminal region, which
determines specificity. The standard reaction mechanism
is a 4-pro-S hydride transfer and proton relay involving
the conserved Tyr and Lys, a water molecule stabilized
by Asn, and nicotinamide. Extended SDRs have additional
elements in the C-terminal region, and typically have a
TGXXGXXG cofactor binding motif. Complex (multidomain)
SDRs such as ketoreductase domains of fatty acid
synthase have a GGXGXXG NAD(P)-binding motif and an
altered active site motif (YXXXN). Fungal type KRs have
a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs
have lost catalytic activity and/or have an unusual
NAD(P)-binding motif and missing or unusual active site
residues. Reactions catalyzed within the SDR family
include isomerization, decarboxylation, epimerization,
C=N bond reduction, dehydratase activity,
dehalogenation, Enoyl-CoA reduction, and
carbonyl-alcohol oxidoreduction.
Length = 480
Score = 31.4 bits (72), Expect = 1.6
Identities = 12/26 (46%), Positives = 15/26 (57%), Gaps = 2/26 (7%)
Query: 20 VRGGASVGTLGRHLARRLVEIGAKDV 45
V GG G LG H+AR L GA+ +
Sbjct: 235 VTGGT--GALGAHVARWLARRGAEHL 258
>gnl|CDD|226321 COG3799, Mal, Methylaspartate ammonia-lyase [Amino acid transport
and metabolism].
Length = 410
Score = 31.4 bits (71), Expect = 1.6
Identities = 13/39 (33%), Positives = 17/39 (43%)
Query: 230 DFLNKAVKPVLVGGPNIRVAKAQKAFIELADATGYPIAI 268
FLN VKP+LVG + F +L D A+
Sbjct: 91 PFLNDHVKPLLVGRDVDAFLDNARVFEKLIDGNLLHTAV 129
>gnl|CDD|214833 smart00822, PKS_KR, This enzymatic domain is part of bacterial
polyketide synthases. It catalyses the first step in
the reductive modification of the beta-carbonyl centres
in the growing polyketide chain. It uses NADPH to
reduce the keto group to a hydroxy group.
Length = 180
Score = 29.8 bits (68), Expect = 2.5
Identities = 13/24 (54%), Positives = 15/24 (62%), Gaps = 2/24 (8%)
Query: 22 GGASVGTLGRHLARRLVEIGAKDV 45
GG G LGR LAR L E GA+ +
Sbjct: 7 GGL--GGLGRALARWLAERGARRL 28
>gnl|CDD|185702 cd09025, Aldose_epim_Slr1438, Aldose 1-epimerase, similar to
Synechocystis Slr1438. Proteins similar to
Synechocystis Slr1438 are uncharacterized members of
aldose-1-epimerase superfamily. Aldose 1-epimerases or
mutarotases are key enzymes of carbohydrate metabolism,
catalyzing the interconversion of the alpha- and
beta-anomers of hexose sugars such as glucose and
galactose. This interconversion is an important step
that allows anomer specific metabolic conversion of
sugars. Studies of the catalytic mechanism of the best
known member of the family, galactose mutarotase, have
shown a glutamate and a histidine residue to be critical
for catalysis; the glutamate serves as the active site
base to initiate the reaction by removing the proton
from the C-1 hydroxyl group of the sugar substrate, and
the histidine as the active site acid to protonate the
C-5 ring oxygen.
Length = 271
Score = 30.3 bits (69), Expect = 2.6
Identities = 13/56 (23%), Positives = 20/56 (35%), Gaps = 12/56 (21%)
Query: 486 SIIFLINNGGYTIEVEIHDGPYNVIKNW-----DY------TGLVNAIHNGEGKCW 530
G I + HD P++ + W D+ TG NA++ GE
Sbjct: 203 PASLTDGARGLKITL-DHDEPFSNLVVWTDKGKDFVCLEPWTGPRNALNTGERLLL 257
>gnl|CDD|237179 PRK12709, flgJ, flagellar rod assembly protein/muramidase FlgJ;
Provisional.
Length = 320
Score = 30.3 bits (68), Expect = 2.8
Identities = 14/38 (36%), Positives = 20/38 (52%)
Query: 76 NAGYAADGYARSRGVGACVVTFTVGGLSVLNAIAGAYS 113
NAG AA + G + GGL+ +NA+A AY+
Sbjct: 103 NAGVAAGAQGDAGAGGMGGLGGNEGGLAAMNALAKAYA 140
>gnl|CDD|235726 PRK06181, PRK06181, short chain dehydrogenase; Provisional.
Length = 263
Score = 29.9 bits (68), Expect = 2.8
Identities = 29/93 (31%), Positives = 36/93 (38%), Gaps = 20/93 (21%)
Query: 22 GGASVGTLGRHLARRLVEIGAKDVFSVPGDFNLTLLDHLIAEPELNLVGCCNELNA--GY 79
GAS G +GR LA RL GA+ V + N T L L E +
Sbjct: 7 TGASEG-IGRALAVRLARAGAQLVLA---ARNETRLASLAQE-------LADHGGEALVV 55
Query: 80 AAD---GYARSRGVGACVVTFTVGGLSVL--NA 107
D A R + A V F GG+ +L NA
Sbjct: 56 PTDVSDAEACERLIEAAVARF--GGIDILVNNA 86
>gnl|CDD|238363 cd00707, Pancreat_lipase_like, Pancreatic lipase-like enzymes.
Lipases are esterases that can hydrolyze long-chain
acyl-triglycerides into di- and monoglycerides,
glycerol, and free fatty acids at a water/lipid
interface. A typical feature of lipases is "interfacial
activation," the process of becoming active at the
lipid/water interface, although several examples of
lipases have been identified that do not undergo
interfacial activation . The active site of a lipase
contains a catalytic triad consisting of Ser - His -
Asp/Glu, but unlike most serine proteases, the active
site is buried inside the structure. A "lid" or "flap"
covers the active site, making it inaccessible to
solvent and substrates. The lid opens during the process
of interfacial activation, allowing the lipid substrate
access to the active site.
Length = 275
Score = 30.3 bits (69), Expect = 2.8
Identities = 14/59 (23%), Positives = 24/59 (40%), Gaps = 18/59 (30%)
Query: 441 IGWSVGATLGYAQAAKDKRVIACIGDGSFQVTAQEISTMIRCGQRSIIFLINNGGYTIE 499
+ W GA Y QA + RV+ E++ + FL++N G ++E
Sbjct: 72 VDWGRGANPNYPQAVNNTRVV-----------GAELAKFLD-------FLVDNTGLSLE 112
>gnl|CDD|237250 PRK12893, PRK12893, allantoate amidohydrolase; Reviewed.
Length = 412
Score = 29.8 bits (68), Expect = 3.9
Identities = 18/64 (28%), Positives = 23/64 (35%), Gaps = 11/64 (17%)
Query: 211 LAPKVSNQLGLEAAVEATADFLNKAVKPVLVGGPNIRVAKAQKAFIELADATGYPIAIMP 270
K++ G++ VE DF P LV V A A+A G M
Sbjct: 306 ACAKIAAARGVQVTVETVWDFPPVPFDPALVA----LVEAA-------AEALGLSHMRMV 354
Query: 271 SGKG 274
SG G
Sbjct: 355 SGAG 358
>gnl|CDD|205177 pfam12987, DUF3871, Domain of unknown function, B. Theta Gene
description (DUF3871). Based on Bacteroides
thetaiotaomicron gene BT_2984, a putative
uncharacterized protein As seen in gene expression
experiments
(http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE22
31). It appears to be upregulated in the presence of
host or other bacterial species vs when in culture.
Length = 323
Score = 29.7 bits (67), Expect = 4.9
Identities = 11/25 (44%), Positives = 15/25 (60%)
Query: 280 HPHFIGTYWGAVSSSFCGEIVESAD 304
H FI T W A +S F GE +E+ +
Sbjct: 57 HQSFIETVWEAANSFFSGETIETPE 81
>gnl|CDD|179856 PRK04516, minC, septum formation inhibitor; Reviewed.
Length = 235
Score = 29.2 bits (65), Expect = 5.0
Identities = 18/50 (36%), Positives = 24/50 (48%), Gaps = 3/50 (6%)
Query: 18 APVRGGASVGTLGRHLARRLVEIGAKDVFSVPG---DFNLTLLDHLIAEP 64
AP+RG A G G AR + ++ SV G +F L DHL +P
Sbjct: 169 APMRGRALAGAKGDTSARIFIHSMQAELVSVAGIYRNFEQDLPDHLHKQP 218
>gnl|CDD|234373 TIGR03846, sulfopy_beta, sulfopyruvate decarboxylase, beta subunit.
Nearly every member of this protein family is the beta
subunit, or else the C-terminal region, of sulfopyruvate
decarboxylase, in an archaeal species capable of
coenzyme M biosynthesis. However, the enzyme also occurs
in Roseovarius nubinhibens ISM in a degradative pathway,
where the resulting sulfoacetaldehyde is desulfonated to
acetyl phosphate, then converted to acetyl-CoA (see
PMID:19581363).
Length = 181
Score = 28.8 bits (65), Expect = 5.2
Identities = 23/71 (32%), Positives = 35/71 (49%), Gaps = 7/71 (9%)
Query: 427 PENCGYEFQMQYGSIGWSVGATLGYAQAAKDKRVIACIGDGSFQVTAQEISTMIRCGQRS 486
P N F M GS+G + LG A A D+ VI GDGS + + T+ ++
Sbjct: 35 PLN----FYM-LGSMGLASSIGLGLA-LATDRTVIVIDGDGSLLMNLGVLPTIAAESPKN 88
Query: 487 -IIFLINNGGY 496
I+ +++NG Y
Sbjct: 89 LILVILDNGAY 99
>gnl|CDD|238967 cd02009, TPP_SHCHC_synthase, Thiamine pyrophosphate (TPP) family,
SHCHC synthase subfamily, TPP-binding module; composed
of proteins similar to Escherichia coli
2-succinyl-6-hydroxyl-2,4-cyclohexadiene-1-carboxylic
acid (SHCHC) synthase (also called MenD). SHCHC synthase
plays a key role in the menaquinone biosynthetic
pathway, converting isochorismate and 2-oxoglutarate to
SHCHC, pyruvate and carbon dioxide. The enzyme requires
TPP and a divalent metal cation for activity.
Length = 175
Score = 28.7 bits (65), Expect = 5.6
Identities = 31/129 (24%), Positives = 48/129 (37%), Gaps = 30/129 (23%)
Query: 449 LGYAQAAKDKRVIACIGDGSFQ-------VTAQEISTMIRCGQRSIIFLINNGGYTI--- 498
LG A A DK + GD SF + QE I +INN G I
Sbjct: 61 LGIA-LATDKPTVLLTGDLSFLHDLNGLLLGKQE-------PLNLTIVVINNNGGGIFSL 112
Query: 499 -EVEIHDGPYNVI----KNWDYTGLVNAIHNGEGKCWTAKVRSEDELTEAMKTATGEQKD 553
+ + + + D+ L A + E + + S DEL +A+++A +
Sbjct: 113 LPQASFEDEFERLFGTPQGLDFEHLAKA-YGLEYRRVS----SLDELEQALESALAQDGP 167
Query: 554 SLCFIEVFV 562
+ IEV
Sbjct: 168 HV--IEVKT 174
>gnl|CDD|113791 pfam05034, MAAL_N, Methylaspartate ammonia-lyase N-terminus.
Methylaspartate ammonia-lyase EC:4.3.1.2 catalyzes the
second step of fermentation of glutamate. It is a
homodimer. This family represents the N-terminal region
of Methylaspartate ammonia-lyase. This domain is
structurally related to pfam03952. This domain is
associated with the catalytic domain pfam07476.
Length = 158
Score = 28.6 bits (64), Expect = 5.9
Identities = 9/39 (23%), Positives = 12/39 (30%)
Query: 230 DFLNKAVKPVLVGGPNIRVAKAQKAFIELADATGYPIAI 268
+ V P L+G R +L D AI
Sbjct: 90 PVTERVVAPRLIGRDVSRFLDNAAKVDKLIDGNRLHTAI 128
>gnl|CDD|223528 COG0451, WcaG, Nucleoside-diphosphate-sugar epimerases [Cell
envelope biogenesis, outer membrane / Carbohydrate
transport and metabolism].
Length = 314
Score = 29.1 bits (65), Expect = 7.3
Identities = 14/47 (29%), Positives = 21/47 (44%), Gaps = 6/47 (12%)
Query: 20 VRGGASVGTLGRHLARRLVEIGAK----DVFSVPGDFNLTLLDHLIA 62
V GGA G +G HL RL+ G D D L+ ++ ++
Sbjct: 5 VTGGA--GFIGSHLVERLLAAGHDVRGLDRLRDGLDPLLSGVEFVVL 49
>gnl|CDD|223190 COG0112, GlyA, Glycine/serine hydroxymethyltransferase [Amino acid
transport and metabolism].
Length = 413
Score = 29.1 bits (66), Expect = 7.4
Identities = 17/34 (50%), Positives = 19/34 (55%), Gaps = 3/34 (8%)
Query: 226 EATADFLNKAVKPVLVGGPNIRV--AKAQKAFIE 257
E A +N AV P L GGP + V AKA AF E
Sbjct: 244 EELAKKINSAVFPGLQGGPLMHVIAAKAV-AFKE 276
>gnl|CDD|226684 COG4231, COG4231, Indolepyruvate ferredoxin oxidoreductase, alpha
and beta subunits [Energy production and conversion].
Length = 640
Score = 29.3 bits (66), Expect = 7.6
Identities = 12/38 (31%), Positives = 19/38 (50%), Gaps = 6/38 (15%)
Query: 433 EFQMQYG-SIGWSVGATLGYAQAAKDKRVIACIGDGSF 469
+ G SIG + G + A K+++A IGD +F
Sbjct: 425 DTTTMMGSSIGIAGGLSF-----ASTKKIVAVIGDSTF 457
>gnl|CDD|187659 cd08956, KR_3_FAS_SDR_x, beta-ketoacyl reductase (KR) domain of
fatty acid synthase (FAS), subgroup 3, complex (x).
Ketoreductase, a module of the multidomain polyketide
synthase (PKS), has 2 subdomains, each corresponding to
a SDR family monomer. The C-terminal subdomain catalyzes
the NADPH-dependent reduction of the beta-carbonyl of a
polyketide to a hydroxyl group, a step in the
biosynthesis of polyketides, such as erythromycin. The
N-terminal subdomain, an interdomain linker, is a
truncated Rossmann fold which acts to stabilizes the
catalytic subdomain. Unlike typical SDRs, the isolated
domain does not oligomerize but is composed of 2
subdomains, each resembling an SDR monomer. The active
site resembles that of typical SDRs, except that the
usual positions of the catalytic Asn and Tyr are
swapped, so that the canonical YXXXK motif changes to
YXXXN. Modular PKSs are multifunctional structures in
which the makeup recapitulates that found in (and may
have evolved from) FAS. In some instances, such as
porcine FAS, an enoyl reductase (ER) module is inserted
between the sub-domains. Fatty acid synthesis occurs via
the stepwise elongation of a chain (which is attached to
acyl carrier protein, ACP) with 2-carbon units.
Eukaryotic systems consists of large, multifunctional
synthases (type I) while bacterial, type II systems, use
single function proteins. Fungal fatty acid synthesis
uses a dodecamer of 6 alpha and 6 beta subunits. In
mammalian type FAS cycles, ketoacyl synthase forms
acetoacetyl-ACP which is reduced by the NADP-dependent
beta-KR, forming beta-hydroxyacyl-ACP, which is in turn
dehydrated by dehydratase to a beta-enoyl intermediate,
which is reduced by NADP-dependent beta- ER. Polyketide
synthesis also proceeds via the addition of 2-carbon
units as in fatty acid synthesis. The complex SDR
NADP-binding motif, GGXGXXG, is often present, but is
not strictly conserved in each instance of the module.
This subfamily includes KR domains found in many
multidomain PKSs, including six of seven Sorangium
cellulosum PKSs (encoded by spiDEFGHIJ) which
participate in the synthesis of the polyketide scaffold
of the cytotoxic spiroketal polyketide spirangien. These
seven PKSs have either a single PKS module (SpiF), two
PKR modules (SpiD,-E,-I,-J), or three PKS modules
(SpiG,-H). This subfamily includes the second KR domains
of SpiE,-G, I, and -J, both KR domains of SpiD, and the
third KR domain of SpiH. The single KR domain of SpiF,
the first and second KR domains of SpiH, the first KR
domains of SpiE,-G,- I, and -J, and the third KR domain
of SpiG, belong to a different KR_FAS_SDR subfamily.
SDRs are a functionally diverse family of
oxidoreductases that have a single domain with a
structurally conserved Rossmann fold (alpha/beta folding
pattern with a central beta-sheet), an NAD(P)(H)-binding
region, and a structurally diverse C-terminal region.
Classical SDRs are typically about 250 residues long,
while extended SDRs are approximately 350 residues.
Sequence identity between different SDR enzymes are
typically in the 15-30% range, but the enzymes share the
Rossmann fold NAD-binding motif and characteristic
NAD-binding and catalytic sequence patterns. These
enzymes catalyze a wide range of activities including
the metabolism of steroids, cofactors, carbohydrates,
lipids, aromatic compounds, and amino acids, and act in
redox sensing. Classical SDRs have an TGXXX[AG]XG
cofactor binding motif and a YXXXK active site motif,
with the Tyr residue of the active site motif serving as
a critical catalytic residue (Tyr-151, human
prostaglandin dehydrogenase (PGDH) numbering). In
addition to the Tyr and Lys, there is often an upstream
Ser (Ser-138, PGDH numbering) and/or an Asn (Asn-107,
PGDH numbering) contributing to the active site; while
substrate binding is in the C-terminal region, which
determines specificity. The standard reaction mechanism
is a 4-pro-S hydride transfer and proton relay involving
the conserved Tyr and Lys, a water molecule stabilized
by Asn, and nicotinamide. Extended SDRs have additional
elements in the C-terminal region, and typically have a
TGXXGXXG cofactor binding motif. Complex (multidomain)
SDRs such as ketoreductase domains of fatty acid
synthase have a GGXGXXG NAD(P)-binding motif and an
altered active site motif (YXXXN). Fungal type KRs have
a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs
have lost catalytic activity and/or have an unusual
NAD(P)-binding motif and missing or unusual active site
residues. Reactions catalyzed within the SDR family
include isomerization, decarboxylation, epimerization,
C=N bond reduction, dehydratase activity,
dehalogenation, Enoyl-CoA reduction, and
carbonyl-alcohol oxidoreduction.
Length = 448
Score = 29.2 bits (66), Expect = 7.9
Identities = 11/20 (55%), Positives = 12/20 (60%), Gaps = 2/20 (10%)
Query: 20 VRGGASVGTLGRHLARRLVE 39
+ GG GTLG LAR LV
Sbjct: 198 ITGGT--GTLGALLARHLVT 215
>gnl|CDD|133444 cd01075, NAD_bind_Leu_Phe_Val_DH, NAD(P) binding domain of leucine
dehydrogenase, phenylalanine dehydrogenase, and valine
dehydrogenase. Amino acid dehydrogenase (DH) is a
widely distributed family of enzymes that catalyzes the
oxidative deamination of an amino acid to its keto acid
and ammonia with concomitant reduction of NADP+. For
example, leucine DH catalyzes the reversible oxidative
deamination of L-leucine and several other straight or
branched chain amino acids to the corresponding
2-oxoacid derivative. Amino acid DH -like NAD(P)-binding
domains are members of the Rossmann fold superfamily and
include glutamate, leucine, and phenylalanine DHs,
methylene tetrahydrofolate DH,
methylene-tetrahydromethanopterin DH,
methylene-tetrahydropholate DH/cyclohydrolase, Shikimate
DH-like proteins, malate oxidoreductases, and glutamyl
tRNA reductase. Amino acid DHs catalyze the deamination
of amino acids to keto acids with NAD(P)+ as a cofactor.
The NAD(P)-binding Rossmann fold superfamily includes a
wide variety of protein families including NAD(P)-
binding domains of alcohol DHs, tyrosine-dependent
oxidoreductases, glyceraldehyde-3-phosphate DH,
lactate/malate DHs, formate/glycerate DHs, siroheme
synthases, 6-phosphogluconate DH, amino acid DHs,
repressor rex, NAD-binding potassium channel domain,
CoA-binding, and ornithine cyclodeaminase-like domains.
These domains have an alpha-beta-alpha configuration.
NAD binding involves numerous hydrogen and van der Waals
contacts.
Length = 200
Score = 28.3 bits (64), Expect = 8.3
Identities = 24/88 (27%), Positives = 36/88 (40%), Gaps = 11/88 (12%)
Query: 26 VGTLGRHLARRLVEIGAKDVFSVPGDFNLTLLDHLIAEPELNLVGCCNELNAGYA--ADG 83
+G +G LA L+E GAK + + D N + +V Y+ AD
Sbjct: 36 LGKVGYKLAEHLLEEGAKLIVA---DINEEAVARAAELFGATVV----APEEIYSVDADV 88
Query: 84 YARSRGVGACVVTFTVGGLSVLNAIAGA 111
+A +G + T+ L AIAGA
Sbjct: 89 FAPC-ALGGVINDDTIPQLKA-KAIAGA 114
>gnl|CDD|235470 PRK05444, PRK05444, 1-deoxy-D-xylulose-5-phosphate synthase;
Provisional.
Length = 580
Score = 28.9 bits (66), Expect = 8.8
Identities = 13/31 (41%), Positives = 20/31 (64%), Gaps = 5/31 (16%)
Query: 444 SVGATLGYAQAA-----KDKRVIACIGDGSF 469
S+ A LG A+A +D++V+A IGDG+
Sbjct: 122 SISAALGMAKARDLKGGEDRKVVAVIGDGAL 152
>gnl|CDD|234170 TIGR03336, IOR_alpha, indolepyruvate ferredoxin oxidoreductase,
alpha subunit. Indolepyruvate ferredoxin oxidoreductase
(IOR) is an alpha 2/beta 2 tetramer related to ketoacid
oxidoreductases for pyruvate (1.2.7.1, POR),
2-ketoglutarate (1.2.7.3, KOR), and 2-oxoisovalerate
(1.2.7.7, VOR). These multi-subunit enzymes typically
are found in anaerobes and are inactiviated by oxygen.
IOR in Pyrococcus acts in fermentation of all three
aromatic amino acids, following removal of the amino
group by transamination. In Methanococcus maripaludis,
by contrast, IOR acts in the opposite direction, in
pathways of amino acid biosynthesis from phenylacetate,
indoleacetate, and p-hydroxyphenylacetate. In M.
maripaludis and many other species, iorA and iorB are
found next to an apparent phenylacetate-CoA ligase.
Length = 595
Score = 28.9 bits (65), Expect = 9.1
Identities = 11/30 (36%), Positives = 20/30 (66%)
Query: 440 SIGWSVGATLGYAQAAKDKRVIACIGDGSF 469
+G S+G G ++A + +R++A IGD +F
Sbjct: 404 CMGASIGVASGLSKAGEKQRIVAFIGDSTF 433
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.319 0.136 0.414
Gapped
Lambda K H
0.267 0.0940 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 30,251,886
Number of extensions: 3017368
Number of successful extensions: 3210
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3120
Number of HSP's successfully gapped: 182
Length of query: 589
Length of database: 10,937,602
Length adjustment: 102
Effective length of query: 487
Effective length of database: 6,413,494
Effective search space: 3123371578
Effective search space used: 3123371578
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 62 (27.3 bits)