Query 007802
Match_columns 589
No_of_seqs 185 out of 1382
Neff 4.7
Searched_HMMs 46136
Date Thu Mar 28 15:32:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007802.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/007802hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1257 NADP+-dependent malic 100.0 1E-218 2E-223 1723.5 49.3 544 44-588 25-568 (582)
2 PRK13529 malate dehydrogenase; 100.0 3E-211 6E-216 1701.5 52.1 541 45-589 12-561 (563)
3 PLN03129 NADP-dependent malic 100.0 2E-210 4E-215 1700.0 53.6 543 47-589 39-581 (581)
4 PTZ00317 NADP-dependent malic 100.0 4E-209 9E-214 1683.4 52.5 540 43-584 12-559 (559)
5 COG0281 SfcA Malic enzyme [Ene 100.0 1E-119 3E-124 950.6 34.7 424 83-588 1-431 (432)
6 PRK12861 malic enzyme; Reviewe 100.0 2E-110 5E-115 940.9 35.0 370 130-578 34-420 (764)
7 PRK12862 malic enzyme; Reviewe 100.0 2E-109 3E-114 939.0 35.0 369 130-578 38-424 (763)
8 PRK07232 bifunctional malic en 100.0 4E-108 9E-113 923.3 35.4 368 130-577 30-415 (752)
9 cd05312 NAD_bind_1_malic_enz N 100.0 1.5E-99 3E-104 771.6 29.9 277 305-583 1-279 (279)
10 PF03949 Malic_M: Malic enzyme 100.0 4.3E-96 9E-101 738.2 20.7 252 305-558 1-255 (255)
11 cd00762 NAD_bind_malic_enz NAD 100.0 2.7E-93 5.9E-98 717.2 26.0 251 305-557 1-254 (254)
12 PF00390 malic: Malic enzyme, 100.0 1.5E-83 3.2E-88 617.9 9.4 182 114-295 1-182 (182)
13 cd05311 NAD_bind_2_malic_enz N 100.0 3.7E-58 7.9E-63 456.1 22.5 223 305-557 1-226 (226)
14 cd05191 NAD_bind_amino_acid_DH 98.9 3E-08 6.4E-13 84.7 11.6 86 307-444 1-86 (86)
15 PRK05476 S-adenosyl-L-homocyst 97.6 0.0072 1.6E-07 66.6 21.2 158 251-447 106-302 (425)
16 TIGR01035 hemA glutamyl-tRNA r 97.2 0.0017 3.7E-08 70.8 9.8 121 306-447 158-280 (417)
17 PRK09414 glutamate dehydrogena 97.1 0.019 4.1E-07 63.7 17.4 189 251-459 138-357 (445)
18 PLN02477 glutamate dehydrogena 97.0 0.016 3.6E-07 63.5 15.6 186 251-459 112-324 (410)
19 cd05211 NAD_bind_Glu_Leu_Phe_V 97.0 0.0081 1.8E-07 60.4 12.1 130 308-459 2-140 (217)
20 cd05213 NAD_bind_Glutamyl_tRNA 96.9 0.005 1.1E-07 64.6 10.1 137 285-448 139-277 (311)
21 PRK14031 glutamate dehydrogena 96.9 0.035 7.5E-07 61.6 16.8 182 251-447 134-347 (444)
22 cd00401 AdoHcyase S-adenosyl-L 96.9 0.015 3.1E-07 64.0 13.5 129 297-459 163-302 (413)
23 TIGR00936 ahcY adenosylhomocys 96.8 0.018 3.9E-07 63.2 13.6 128 297-458 156-294 (406)
24 PRK00045 hemA glutamyl-tRNA re 96.8 0.0051 1.1E-07 67.2 9.3 120 307-447 161-283 (423)
25 PRK14982 acyl-ACP reductase; P 96.8 0.011 2.4E-07 63.4 11.3 113 308-448 134-250 (340)
26 PTZ00079 NADP-specific glutama 96.6 0.12 2.7E-06 57.5 18.5 188 251-459 143-366 (454)
27 cd01080 NAD_bind_m-THF_DH_Cycl 96.6 0.016 3.4E-07 56.3 10.3 91 313-447 28-119 (168)
28 TIGR02853 spore_dpaA dipicolin 96.6 0.018 3.9E-07 60.1 11.2 138 306-472 128-265 (287)
29 PLN02494 adenosylhomocysteinas 96.6 0.033 7E-07 62.3 13.5 130 297-460 215-355 (477)
30 PF01488 Shikimate_DH: Shikima 96.5 0.0042 9E-08 57.4 5.2 102 325-448 8-113 (135)
31 PRK14030 glutamate dehydrogena 96.5 0.12 2.7E-06 57.4 17.2 189 251-459 134-357 (445)
32 COG0373 HemA Glutamyl-tRNA red 96.1 0.027 5.8E-07 62.0 9.3 215 285-563 139-363 (414)
33 cd01076 NAD_bind_1_Glu_DH NAD( 96.0 0.057 1.2E-06 54.7 10.8 132 306-459 8-149 (227)
34 cd05313 NAD_bind_2_Glu_DH NAD( 95.9 0.15 3.2E-06 52.9 13.6 134 307-459 16-167 (254)
35 PTZ00075 Adenosylhomocysteinas 95.9 0.17 3.7E-06 56.7 15.0 122 297-446 215-343 (476)
36 PLN00203 glutamyl-tRNA reducta 95.9 0.029 6.3E-07 63.3 9.1 202 307-560 243-455 (519)
37 PRK08306 dipicolinate synthase 95.9 0.075 1.6E-06 55.7 11.3 128 311-472 134-266 (296)
38 PRK08293 3-hydroxybutyryl-CoA 95.9 0.15 3.2E-06 52.6 13.4 198 330-576 4-221 (287)
39 PRK14192 bifunctional 5,10-met 95.7 0.071 1.5E-06 55.8 10.2 108 307-458 137-249 (283)
40 PRK12549 shikimate 5-dehydroge 95.5 0.047 1E-06 56.8 8.0 90 314-420 112-203 (284)
41 cd01065 NAD_bind_Shikimate_DH 95.4 0.053 1.1E-06 49.9 7.5 108 314-447 4-120 (155)
42 PRK13940 glutamyl-tRNA reducta 95.4 0.052 1.1E-06 59.6 8.6 192 310-560 163-359 (414)
43 PRK14175 bifunctional 5,10-met 95.4 0.095 2.1E-06 55.2 10.1 96 307-446 136-232 (286)
44 cd01075 NAD_bind_Leu_Phe_Val_D 95.4 0.12 2.6E-06 51.1 10.1 122 308-459 5-129 (200)
45 PLN00106 malate dehydrogenase 95.3 0.11 2.4E-06 55.4 10.2 118 314-447 4-138 (323)
46 PF00670 AdoHcyase_NAD: S-aden 95.3 0.33 7.3E-06 47.3 12.5 121 306-459 3-123 (162)
47 cd01078 NAD_bind_H4MPT_DH NADP 95.2 0.11 2.5E-06 50.2 9.2 54 308-373 7-61 (194)
48 PRK00676 hemA glutamyl-tRNA re 94.9 0.14 3.1E-06 55.0 9.6 90 325-448 170-265 (338)
49 TIGR00518 alaDH alanine dehydr 94.3 0.14 3.1E-06 55.2 8.2 95 327-445 165-268 (370)
50 PF03807 F420_oxidored: NADP o 94.1 0.093 2E-06 44.7 5.1 95 331-446 1-96 (96)
51 TIGR01809 Shik-DH-AROM shikima 94.0 0.18 3.9E-06 52.4 7.9 102 297-426 99-207 (282)
52 PRK10792 bifunctional 5,10-met 93.9 0.57 1.2E-05 49.4 11.4 93 308-444 138-231 (285)
53 PRK08328 hypothetical protein; 93.6 0.038 8.3E-07 55.8 2.1 120 291-448 7-131 (231)
54 PRK05086 malate dehydrogenase; 93.6 0.37 8E-06 50.9 9.5 105 330-447 1-121 (312)
55 TIGR02356 adenyl_thiF thiazole 93.6 0.12 2.6E-06 51.0 5.5 38 325-373 17-54 (202)
56 cd05212 NAD_bind_m-THF_DH_Cycl 93.4 0.68 1.5E-05 43.8 10.0 83 310-429 9-91 (140)
57 PRK08223 hypothetical protein; 93.4 0.14 3E-06 54.1 5.8 57 288-373 4-60 (287)
58 TIGR02354 thiF_fam2 thiamine b 93.3 0.15 3.3E-06 50.6 5.7 123 325-468 17-142 (200)
59 PRK14191 bifunctional 5,10-met 93.3 0.34 7.5E-06 51.0 8.5 83 309-429 137-220 (285)
60 cd05296 GH4_P_beta_glucosidase 93.1 0.2 4.4E-06 55.2 6.9 125 330-470 1-166 (419)
61 PF00208 ELFV_dehydrog: Glutam 93.0 0.24 5.3E-06 50.8 6.7 130 304-447 6-151 (244)
62 cd00650 LDH_MDH_like NAD-depen 92.6 0.25 5.5E-06 50.4 6.3 126 332-471 1-145 (263)
63 PRK12475 thiamine/molybdopteri 92.5 0.3 6.6E-06 52.3 7.1 39 325-374 20-58 (338)
64 PRK06130 3-hydroxybutyryl-CoA 92.5 4.6 9.9E-05 41.9 15.5 121 330-476 5-142 (311)
65 PRK12749 quinate/shikimate deh 92.5 0.28 6E-06 51.4 6.5 49 314-373 109-157 (288)
66 PRK05600 thiamine biosynthesis 92.5 0.26 5.7E-06 53.4 6.5 102 325-442 37-162 (370)
67 PRK08605 D-lactate dehydrogena 92.1 3.4 7.3E-05 44.1 14.2 154 261-446 59-238 (332)
68 PRK09424 pntA NAD(P) transhydr 92.1 0.83 1.8E-05 51.8 10.0 182 236-454 82-296 (509)
69 PRK07531 bifunctional 3-hydrox 92.1 2.6 5.6E-05 47.3 13.9 123 330-477 5-144 (495)
70 cd05291 HicDH_like L-2-hydroxy 91.9 0.54 1.2E-05 49.2 7.8 125 331-472 2-144 (306)
71 PF00056 Ldh_1_N: lactate/mala 91.7 0.1 2.2E-06 48.9 2.1 104 331-447 2-121 (141)
72 PRK08762 molybdopterin biosynt 91.7 0.41 8.9E-06 51.6 7.0 38 325-373 131-168 (376)
73 PRK14027 quinate/shikimate deh 91.7 0.37 8.1E-06 50.4 6.4 57 298-373 104-160 (283)
74 PLN02928 oxidoreductase family 91.7 2.2 4.8E-05 45.8 12.4 139 306-468 120-284 (347)
75 PRK12548 shikimate 5-dehydroge 91.7 0.49 1.1E-05 49.3 7.2 58 297-373 102-159 (289)
76 PTZ00325 malate dehydrogenase; 91.6 1 2.3E-05 48.1 9.7 107 327-447 6-128 (321)
77 TIGR02355 moeB molybdopterin s 91.5 0.54 1.2E-05 48.0 7.2 104 325-448 20-127 (240)
78 cd00757 ThiF_MoeB_HesA_family 91.5 0.62 1.3E-05 46.7 7.5 104 325-447 17-123 (228)
79 COG0578 GlpA Glycerol-3-phosph 91.5 1.2 2.6E-05 50.8 10.5 162 328-562 11-179 (532)
80 TIGR00561 pntA NAD(P) transhyd 91.5 1.1 2.4E-05 50.8 10.2 167 235-433 80-276 (511)
81 PRK14194 bifunctional 5,10-met 91.1 0.93 2E-05 48.2 8.6 92 309-444 139-231 (301)
82 PRK00066 ldh L-lactate dehydro 91.0 0.52 1.1E-05 49.9 6.6 126 329-471 6-148 (315)
83 PRK14189 bifunctional 5,10-met 90.8 0.97 2.1E-05 47.7 8.4 84 308-429 137-221 (285)
84 PRK07878 molybdopterin biosynt 90.8 0.45 9.8E-06 51.8 6.2 38 325-373 38-75 (392)
85 cd05197 GH4_glycoside_hydrolas 90.8 0.64 1.4E-05 51.4 7.3 105 330-447 1-146 (425)
86 PTZ00082 L-lactate dehydrogena 90.7 0.98 2.1E-05 48.0 8.4 124 329-470 6-153 (321)
87 cd01079 NAD_bind_m-THF_DH NAD 90.7 1.7 3.6E-05 43.8 9.5 103 310-429 34-147 (197)
88 PRK00257 erythronate-4-phospha 90.5 2.3 4.9E-05 46.6 11.1 157 308-505 95-263 (381)
89 PRK06129 3-hydroxyacyl-CoA deh 90.5 0.52 1.1E-05 49.2 6.1 32 330-373 3-34 (308)
90 PTZ00117 malate dehydrogenase; 90.3 1.2 2.5E-05 47.3 8.5 126 328-471 4-148 (319)
91 PRK14178 bifunctional 5,10-met 90.3 0.87 1.9E-05 47.9 7.5 85 307-429 130-215 (279)
92 PRK00258 aroE shikimate 5-dehy 90.3 0.68 1.5E-05 47.8 6.6 49 314-373 107-156 (278)
93 PRK06035 3-hydroxyacyl-CoA deh 90.1 5.5 0.00012 41.1 13.2 32 330-373 4-35 (291)
94 PRK15076 alpha-galactosidase; 90.1 0.85 1.8E-05 50.5 7.6 129 330-474 2-174 (431)
95 PRK14619 NAD(P)H-dependent gly 90.1 2.6 5.7E-05 44.0 10.9 33 329-373 4-36 (308)
96 PRK14176 bifunctional 5,10-met 90.1 1.4 2.9E-05 46.7 8.7 84 308-429 143-227 (287)
97 PRK09260 3-hydroxybutyryl-CoA 90.0 0.78 1.7E-05 47.3 6.8 32 330-373 2-33 (288)
98 PF01210 NAD_Gly3P_dh_N: NAD-d 90.0 0.37 8E-06 45.5 4.1 85 331-435 1-93 (157)
99 PF00899 ThiF: ThiF family; I 90.0 0.53 1.1E-05 43.1 5.0 35 328-373 1-35 (135)
100 PF02826 2-Hacid_dh_C: D-isome 89.9 1.4 3.1E-05 42.4 8.1 115 320-466 27-147 (178)
101 PRK14851 hypothetical protein; 89.8 1.1 2.5E-05 52.3 8.7 122 325-463 39-194 (679)
102 COG0169 AroE Shikimate 5-dehyd 89.6 0.77 1.7E-05 48.4 6.4 48 315-373 110-159 (283)
103 COG0334 GdhA Glutamate dehydro 89.4 11 0.00024 41.9 15.3 187 250-459 111-325 (411)
104 cd05297 GH4_alpha_glucosidase_ 89.2 1 2.2E-05 49.5 7.4 126 331-472 2-170 (423)
105 PRK15438 erythronate-4-phospha 89.1 3.8 8.2E-05 44.9 11.5 117 306-458 93-217 (378)
106 PRK07688 thiamine/molybdopteri 89.1 0.52 1.1E-05 50.5 4.8 38 325-373 20-57 (339)
107 PF02056 Glyco_hydro_4: Family 89.0 0.91 2E-05 45.0 6.1 109 331-453 1-151 (183)
108 cd00755 YgdL_like Family of ac 89.0 0.75 1.6E-05 46.9 5.7 105 326-449 8-116 (231)
109 PRK05597 molybdopterin biosynt 88.5 1.1 2.5E-05 48.1 7.0 38 325-373 24-61 (355)
110 cd00704 MDH Malate dehydrogena 88.5 2 4.3E-05 45.8 8.7 110 331-447 2-129 (323)
111 PRK06223 malate dehydrogenase; 88.4 1.2 2.6E-05 46.3 6.9 126 330-473 3-147 (307)
112 cd05298 GH4_GlvA_pagL_like Gly 88.4 1.1 2.4E-05 49.7 7.0 130 330-474 1-171 (437)
113 COG0111 SerA Phosphoglycerate 88.0 4.1 8.8E-05 43.7 10.6 100 308-432 103-224 (324)
114 TIGR02992 ectoine_eutC ectoine 87.9 3.6 7.8E-05 43.6 10.2 115 315-456 117-237 (326)
115 PRK04346 tryptophan synthase s 87.3 13 0.00028 41.1 14.3 95 223-350 23-128 (397)
116 PRK14183 bifunctional 5,10-met 87.2 2.6 5.7E-05 44.5 8.5 85 307-429 135-220 (281)
117 PRK07411 hypothetical protein; 87.1 1.6 3.4E-05 47.7 7.1 38 325-373 34-71 (390)
118 PRK14190 bifunctional 5,10-met 86.9 2.7 5.9E-05 44.4 8.5 84 308-429 137-221 (284)
119 PRK14179 bifunctional 5,10-met 86.9 2.6 5.5E-05 44.6 8.3 84 308-429 137-221 (284)
120 TIGR01915 npdG NADPH-dependent 86.8 3 6.4E-05 41.4 8.3 96 331-449 2-106 (219)
121 PRK14184 bifunctional 5,10-met 86.7 2.3 5E-05 45.0 7.8 88 308-429 136-224 (286)
122 cd01337 MDH_glyoxysomal_mitoch 86.5 2.4 5.1E-05 45.2 7.8 102 331-447 2-120 (310)
123 PRK08644 thiamine biosynthesis 86.4 0.75 1.6E-05 46.0 3.9 38 325-373 24-61 (212)
124 PRK14177 bifunctional 5,10-met 86.3 3.4 7.3E-05 43.7 8.8 83 309-429 139-222 (284)
125 PF02882 THF_DHG_CYH_C: Tetrah 86.3 3.4 7.4E-05 40.1 8.2 84 308-429 15-99 (160)
126 PRK12550 shikimate 5-dehydroge 86.0 1.7 3.7E-05 45.3 6.4 56 298-373 100-155 (272)
127 cd01336 MDH_cytoplasmic_cytoso 86.0 4.6 0.0001 43.1 9.7 132 331-472 4-155 (325)
128 TIGR01408 Ube1 ubiquitin-activ 86.0 0.4 8.6E-06 58.4 1.9 124 260-414 358-496 (1008)
129 cd01492 Aos1_SUMO Ubiquitin ac 85.8 0.8 1.7E-05 45.3 3.7 77 325-418 17-97 (197)
130 TIGR01758 MDH_euk_cyt malate d 85.7 5 0.00011 42.9 9.9 134 331-474 1-154 (324)
131 PRK14188 bifunctional 5,10-met 85.7 2.8 6.1E-05 44.5 7.9 82 308-427 137-219 (296)
132 PRK08374 homoserine dehydrogen 85.6 3.7 8E-05 44.0 8.8 106 330-442 3-121 (336)
133 PRK07634 pyrroline-5-carboxyla 85.3 2.3 5E-05 42.3 6.7 118 328-470 3-121 (245)
134 TIGR00872 gnd_rel 6-phosphoglu 85.0 2.9 6.4E-05 43.5 7.6 98 331-455 2-102 (298)
135 PLN02306 hydroxypyruvate reduc 84.9 7.5 0.00016 42.7 10.9 196 295-526 107-345 (386)
136 PRK14172 bifunctional 5,10-met 84.9 3.8 8.3E-05 43.2 8.3 83 309-429 138-221 (278)
137 PRK14174 bifunctional 5,10-met 84.8 3.5 7.5E-05 43.8 8.0 87 309-429 139-226 (295)
138 PRK07679 pyrroline-5-carboxyla 84.8 23 0.00051 36.4 14.0 99 329-447 3-102 (279)
139 PRK11880 pyrroline-5-carboxyla 84.5 3.9 8.4E-05 41.4 8.0 120 330-477 3-122 (267)
140 PRK00094 gpsA NAD(P)H-dependen 84.4 2.8 6E-05 43.3 7.1 98 331-448 3-109 (325)
141 PRK13243 glyoxylate reductase; 84.2 13 0.00029 39.6 12.2 141 324-499 145-291 (333)
142 PRK14171 bifunctional 5,10-met 84.1 4.8 0.0001 42.7 8.7 86 306-429 136-222 (288)
143 PRK15116 sulfur acceptor prote 83.7 3.5 7.6E-05 43.1 7.4 108 325-450 26-136 (268)
144 TIGR01772 MDH_euk_gproteo mala 83.6 7.7 0.00017 41.3 10.1 115 331-460 1-133 (312)
145 cd01485 E1-1_like Ubiquitin ac 83.6 1 2.2E-05 44.5 3.3 74 325-415 15-94 (198)
146 PLN02516 methylenetetrahydrofo 83.4 5.3 0.00012 42.6 8.7 85 307-429 145-230 (299)
147 TIGR01763 MalateDH_bact malate 83.0 3.2 7E-05 43.8 6.9 124 330-471 2-144 (305)
148 PF01262 AlaDh_PNT_C: Alanine 83.0 0.47 1E-05 45.3 0.6 90 327-432 18-130 (168)
149 PRK14618 NAD(P)H-dependent gly 82.8 2.3 4.9E-05 44.6 5.7 32 330-373 5-36 (328)
150 PRK05690 molybdopterin biosynt 82.7 1.6 3.6E-05 44.5 4.5 38 325-373 28-65 (245)
151 PRK14166 bifunctional 5,10-met 82.7 6.1 0.00013 41.8 8.7 86 306-429 134-220 (282)
152 PRK14187 bifunctional 5,10-met 82.4 5.7 0.00012 42.3 8.4 85 307-429 138-223 (294)
153 cd01339 LDH-like_MDH L-lactate 82.4 3 6.6E-05 43.4 6.4 121 332-471 1-141 (300)
154 PRK07066 3-hydroxybutyryl-CoA 82.4 4.1 8.9E-05 43.6 7.5 108 403-517 104-219 (321)
155 PRK14193 bifunctional 5,10-met 82.3 5.4 0.00012 42.2 8.2 85 309-429 138-223 (284)
156 cd01338 MDH_choloroplast_like 82.2 7.4 0.00016 41.6 9.3 110 330-447 3-131 (322)
157 PRK12480 D-lactate dehydrogena 81.9 15 0.00032 39.3 11.5 108 307-445 105-235 (330)
158 TIGR01381 E1_like_apg7 E1-like 81.5 1.4 3.1E-05 51.3 3.9 40 325-375 334-373 (664)
159 PLN02545 3-hydroxybutyryl-CoA 81.4 40 0.00086 34.9 14.1 32 330-373 5-36 (295)
160 PRK12921 2-dehydropantoate 2-r 81.3 3.8 8.3E-05 41.9 6.6 100 331-448 2-106 (305)
161 PRK07530 3-hydroxybutyryl-CoA 80.9 9.1 0.0002 39.5 9.2 32 330-373 5-36 (292)
162 cd01483 E1_enzyme_family Super 80.9 2.2 4.8E-05 39.3 4.3 93 331-445 1-98 (143)
163 PRK08291 ectoine utilization p 80.9 13 0.00027 39.6 10.5 115 315-456 120-240 (330)
164 cd01487 E1_ThiF_like E1_ThiF_l 80.8 2.1 4.6E-05 41.4 4.3 32 331-373 1-32 (174)
165 TIGR00507 aroE shikimate 5-deh 80.6 3.9 8.4E-05 42.0 6.4 57 297-373 93-149 (270)
166 PRK06436 glycerate dehydrogena 80.5 25 0.00053 37.4 12.4 126 307-466 84-229 (303)
167 PRK05808 3-hydroxybutyryl-CoA 80.4 14 0.00031 37.9 10.4 32 330-373 4-35 (282)
168 PRK06476 pyrroline-5-carboxyla 80.4 30 0.00066 35.0 12.7 95 331-447 2-96 (258)
169 TIGR01285 nifN nitrogenase mol 80.3 3.3 7.1E-05 45.8 6.1 84 317-418 299-382 (432)
170 cd05290 LDH_3 A subgroup of L- 80.1 4.9 0.00011 42.6 7.1 102 331-447 1-122 (307)
171 PRK07574 formate dehydrogenase 80.1 14 0.0003 40.7 10.7 116 324-470 187-308 (385)
172 TIGR01759 MalateDH-SF1 malate 80.0 9.7 0.00021 40.8 9.3 122 330-461 4-143 (323)
173 PRK01710 murD UDP-N-acetylmura 79.9 10 0.00022 41.9 9.8 116 327-483 12-130 (458)
174 PRK09310 aroDE bifunctional 3- 79.8 3.7 8E-05 46.1 6.3 48 314-373 317-364 (477)
175 PRK06522 2-dehydropantoate 2-r 79.7 5.8 0.00013 40.4 7.3 101 331-448 2-104 (304)
176 PRK08268 3-hydroxy-acyl-CoA de 79.7 8.3 0.00018 43.7 9.1 97 408-518 112-222 (507)
177 PRK14185 bifunctional 5,10-met 79.6 8.6 0.00019 40.9 8.6 88 308-429 136-224 (293)
178 PRK06153 hypothetical protein; 79.5 2.5 5.4E-05 46.6 4.7 102 325-448 172-279 (393)
179 PRK14168 bifunctional 5,10-met 79.4 8.7 0.00019 40.9 8.6 89 307-429 139-228 (297)
180 KOG0029 Amine oxidase [Seconda 79.2 0.88 1.9E-05 51.4 1.2 37 327-366 13-49 (501)
181 PRK09599 6-phosphogluconate de 79.0 11 0.00025 39.2 9.3 92 331-446 2-96 (301)
182 PTZ00345 glycerol-3-phosphate 79.0 7.4 0.00016 42.4 8.2 24 327-350 9-32 (365)
183 PRK14170 bifunctional 5,10-met 78.9 9.2 0.0002 40.6 8.5 85 307-429 135-220 (284)
184 cd05293 LDH_1 A subgroup of L- 78.3 6.6 0.00014 41.7 7.4 124 330-471 4-146 (312)
185 COG0686 Ald Alanine dehydrogen 78.2 4 8.7E-05 44.1 5.6 109 327-456 166-290 (371)
186 KOG0685 Flavin-containing amin 78.1 1 2.2E-05 50.6 1.3 26 325-350 17-42 (498)
187 PF07992 Pyr_redox_2: Pyridine 78.0 3.5 7.5E-05 38.9 4.8 32 331-374 1-32 (201)
188 TIGR03366 HpnZ_proposed putati 77.9 20 0.00044 36.3 10.5 47 314-372 107-153 (280)
189 PRK11790 D-3-phosphoglycerate 77.7 43 0.00094 37.0 13.7 193 295-528 96-319 (409)
190 PRK12490 6-phosphogluconate de 77.7 12 0.00027 38.9 9.1 93 331-447 2-97 (299)
191 PRK15469 ghrA bifunctional gly 77.5 23 0.0005 37.7 11.1 178 307-525 98-297 (312)
192 PRK05442 malate dehydrogenase; 77.4 15 0.00033 39.4 9.8 110 331-447 6-133 (326)
193 PRK08410 2-hydroxyacid dehydro 77.3 27 0.00059 37.0 11.6 135 296-466 85-252 (311)
194 PLN02616 tetrahydrofolate dehy 76.9 9.8 0.00021 41.7 8.2 84 308-429 210-294 (364)
195 PLN03139 formate dehydrogenase 76.9 24 0.00052 38.9 11.3 142 324-498 194-342 (386)
196 TIGR03140 AhpF alkyl hydropero 76.7 7.2 0.00016 43.8 7.5 86 262-350 137-233 (515)
197 PRK07680 late competence prote 76.6 11 0.00024 38.5 8.3 98 331-448 2-100 (273)
198 PF01113 DapB_N: Dihydrodipico 76.2 5.2 0.00011 36.6 5.2 95 331-442 2-97 (124)
199 PRK09880 L-idonate 5-dehydroge 76.1 41 0.00088 35.1 12.4 46 316-373 158-203 (343)
200 KOG2337 Ubiquitin activating E 76.0 2.3 5E-05 48.4 3.3 38 327-375 338-375 (669)
201 TIGR02279 PaaC-3OHAcCoADH 3-hy 75.9 23 0.0005 40.2 11.2 36 484-519 186-221 (503)
202 PRK14173 bifunctional 5,10-met 75.6 15 0.00033 39.0 9.1 84 308-429 134-218 (287)
203 PRK13581 D-3-phosphoglycerate 75.6 49 0.0011 37.7 13.8 195 296-528 86-305 (526)
204 PRK14167 bifunctional 5,10-met 75.3 13 0.00027 39.8 8.4 87 309-429 137-224 (297)
205 PRK06141 ornithine cyclodeamin 75.3 27 0.00058 36.9 10.9 105 327-456 123-232 (314)
206 PRK14180 bifunctional 5,10-met 75.3 15 0.00033 38.9 9.0 86 306-429 135-221 (282)
207 PRK10886 DnaA initiator-associ 75.1 13 0.00028 37.2 8.0 148 327-526 39-187 (196)
208 PRK15317 alkyl hydroperoxide r 75.0 6.6 0.00014 44.1 6.6 85 277-373 148-243 (517)
209 PRK14169 bifunctional 5,10-met 74.8 17 0.00038 38.4 9.2 85 307-429 134-219 (282)
210 TIGR02371 ala_DH_arch alanine 74.8 18 0.00039 38.5 9.5 104 328-456 127-235 (325)
211 KOG0069 Glyoxylate/hydroxypyru 74.5 15 0.00032 39.9 8.8 110 307-445 120-254 (336)
212 TIGR01327 PGDH D-3-phosphoglyc 74.3 26 0.00057 39.8 11.2 195 296-527 84-303 (525)
213 COG1486 CelF Alpha-galactosida 74.2 4.1 8.8E-05 45.6 4.6 124 328-466 2-166 (442)
214 cd05294 LDH-like_MDH_nadp A la 73.9 16 0.00034 38.7 8.7 99 331-447 2-124 (309)
215 PRK14181 bifunctional 5,10-met 73.6 18 0.0004 38.4 9.1 89 307-429 131-220 (287)
216 PRK14182 bifunctional 5,10-met 73.2 18 0.00039 38.4 8.8 83 309-429 137-220 (282)
217 PRK14186 bifunctional 5,10-met 73.2 18 0.00038 38.7 8.9 83 309-429 138-221 (297)
218 PRK02842 light-independent pro 73.2 17 0.00038 40.0 9.2 88 315-417 276-368 (427)
219 PRK06487 glycerate dehydrogena 73.1 79 0.0017 33.6 13.8 187 296-526 88-309 (317)
220 PRK00141 murD UDP-N-acetylmura 72.4 16 0.00034 40.8 8.7 36 326-373 12-47 (473)
221 PF00070 Pyr_redox: Pyridine n 72.1 7.9 0.00017 32.1 4.9 35 331-377 1-35 (80)
222 PRK07231 fabG 3-ketoacyl-(acyl 71.8 9.3 0.0002 37.1 6.1 36 326-373 2-38 (251)
223 cd01491 Ube1_repeat1 Ubiquitin 71.6 3.7 8E-05 43.4 3.4 38 325-373 15-52 (286)
224 COG0190 FolD 5,10-methylene-te 71.6 15 0.00033 38.9 7.9 118 274-429 91-219 (283)
225 PRK02472 murD UDP-N-acetylmura 71.5 11 0.00025 40.9 7.3 35 327-373 3-37 (447)
226 TIGR02622 CDP_4_6_dhtase CDP-g 71.5 11 0.00025 39.3 7.1 106 327-444 2-127 (349)
227 cd01486 Apg7 Apg7 is an E1-lik 71.5 5.1 0.00011 42.9 4.4 68 331-414 1-73 (307)
228 COG0476 ThiF Dinucleotide-util 71.3 5.3 0.00012 40.5 4.4 56 291-373 8-63 (254)
229 PRK08229 2-dehydropantoate 2-r 71.2 8.6 0.00019 40.3 6.0 103 330-449 3-112 (341)
230 cd01484 E1-2_like Ubiquitin ac 71.0 5.4 0.00012 40.8 4.4 32 331-373 1-32 (234)
231 PLN02897 tetrahydrofolate dehy 70.9 16 0.00034 39.9 8.0 83 309-429 194-277 (345)
232 PRK06932 glycerate dehydrogena 70.8 39 0.00085 35.9 10.9 137 325-499 143-289 (314)
233 PLN02819 lysine-ketoglutarate 70.8 14 0.0003 45.6 8.4 102 328-434 202-327 (1042)
234 COG0039 Mdh Malate/lactate deh 70.3 12 0.00027 40.1 7.0 108 330-460 1-126 (313)
235 cd05292 LDH_2 A subgroup of L- 69.8 14 0.0003 38.9 7.3 126 331-473 2-144 (308)
236 PRK09754 phenylpropionate diox 69.8 6.5 0.00014 42.2 4.9 36 328-373 2-37 (396)
237 COG0345 ProC Pyrroline-5-carbo 69.6 27 0.00059 36.7 9.2 105 330-461 2-107 (266)
238 PRK06823 ornithine cyclodeamin 69.0 30 0.00065 36.9 9.6 105 328-457 127-236 (315)
239 PRK07877 hypothetical protein; 68.8 9.4 0.0002 45.3 6.2 101 325-444 103-229 (722)
240 PLN02520 bifunctional 3-dehydr 68.6 11 0.00023 43.0 6.5 38 324-373 374-411 (529)
241 PF13738 Pyr_redox_3: Pyridine 68.6 5.6 0.00012 37.7 3.7 30 333-373 1-30 (203)
242 cd01488 Uba3_RUB Ubiquitin act 68.4 6.2 0.00014 41.8 4.3 32 331-373 1-32 (291)
243 PLN02602 lactate dehydrogenase 68.4 16 0.00035 39.6 7.5 123 330-471 38-180 (350)
244 TIGR00873 gnd 6-phosphoglucona 68.3 14 0.0003 41.6 7.2 95 331-445 1-99 (467)
245 PRK12439 NAD(P)H-dependent gly 68.2 12 0.00027 39.8 6.5 22 329-350 7-28 (341)
246 PLN02527 aspartate carbamoyltr 67.6 1.2E+02 0.0025 32.5 13.6 137 261-420 87-229 (306)
247 PRK13938 phosphoheptose isomer 67.6 33 0.00071 34.3 8.9 104 328-446 44-150 (196)
248 PRK15409 bifunctional glyoxyla 67.5 55 0.0012 35.0 11.2 141 324-499 140-288 (323)
249 PTZ00142 6-phosphogluconate de 67.5 16 0.00035 41.1 7.5 97 330-446 2-103 (470)
250 PF02737 3HCDH_N: 3-hydroxyacy 67.5 8 0.00017 37.6 4.5 96 331-441 1-110 (180)
251 PRK06407 ornithine cyclodeamin 67.0 40 0.00087 35.7 10.0 105 328-457 116-226 (301)
252 cd08237 ribitol-5-phosphate_DH 66.7 1.3E+02 0.0029 31.5 13.8 35 328-372 163-197 (341)
253 PF01494 FAD_binding_3: FAD bi 66.2 7.9 0.00017 39.2 4.4 35 330-376 2-36 (356)
254 COG1052 LdhA Lactate dehydroge 65.6 30 0.00065 37.2 8.8 94 322-445 139-237 (324)
255 PRK07340 ornithine cyclodeamin 65.5 52 0.0011 34.7 10.4 104 327-456 123-230 (304)
256 PF03446 NAD_binding_2: NAD bi 64.7 13 0.00028 35.2 5.3 100 330-457 2-105 (163)
257 cd01489 Uba2_SUMO Ubiquitin ac 64.1 9.3 0.0002 40.9 4.6 32 331-373 1-32 (312)
258 PF03447 NAD_binding_3: Homose 63.9 12 0.00026 33.3 4.6 88 336-441 1-88 (117)
259 COG1250 FadB 3-hydroxyacyl-CoA 63.8 1.9E+02 0.0042 31.1 14.3 140 401-559 101-249 (307)
260 PRK07502 cyclohexadienyl dehyd 63.7 30 0.00065 36.0 8.2 34 330-373 7-40 (307)
261 PRK14620 NAD(P)H-dependent gly 63.7 18 0.00039 37.9 6.6 31 331-373 2-32 (326)
262 PRK06719 precorrin-2 dehydroge 63.6 10 0.00022 36.3 4.4 36 326-373 10-45 (157)
263 PLN02688 pyrroline-5-carboxyla 63.5 33 0.00071 34.7 8.3 94 331-447 2-98 (266)
264 COG1179 Dinucleotide-utilizing 63.1 6.5 0.00014 41.1 3.1 42 326-378 27-68 (263)
265 PRK06718 precorrin-2 dehydroge 63.0 10 0.00023 37.7 4.5 35 326-372 7-41 (202)
266 PRK12429 3-hydroxybutyrate deh 62.9 34 0.00074 33.3 8.1 35 327-373 2-37 (258)
267 TIGR00465 ilvC ketol-acid redu 62.5 31 0.00067 36.8 8.2 24 327-350 1-24 (314)
268 TIGR01214 rmlD dTDP-4-dehydror 62.3 31 0.00067 34.5 7.8 60 331-420 1-61 (287)
269 TIGR01292 TRX_reduct thioredox 62.0 9.3 0.0002 38.2 4.0 31 331-373 2-32 (300)
270 PRK06270 homoserine dehydrogen 61.7 52 0.0011 35.3 9.7 106 330-442 3-124 (341)
271 TIGR01283 nifE nitrogenase mol 61.7 21 0.00045 39.7 6.9 86 316-416 313-402 (456)
272 TIGR01470 cysG_Nterm siroheme 61.6 11 0.00025 37.5 4.5 36 326-373 6-41 (205)
273 TIGR01771 L-LDH-NAD L-lactate 60.9 19 0.0004 38.1 6.1 123 334-471 1-139 (299)
274 PF02423 OCD_Mu_crystall: Orni 60.5 18 0.00039 38.3 5.9 103 329-456 128-237 (313)
275 PRK00536 speE spermidine synth 60.4 15 0.00033 38.3 5.3 102 329-473 73-175 (262)
276 PRK11730 fadB multifunctional 60.3 26 0.00057 41.4 7.8 107 403-518 413-527 (715)
277 TIGR03693 ocin_ThiF_like putat 60.0 44 0.00096 39.2 9.3 104 289-420 101-215 (637)
278 PRK15181 Vi polysaccharide bio 59.5 37 0.0008 35.7 8.1 105 323-444 9-141 (348)
279 TIGR03169 Nterm_to_SelD pyridi 59.5 6.5 0.00014 41.3 2.5 36 331-375 1-36 (364)
280 PF05834 Lycopene_cycl: Lycope 59.4 12 0.00025 40.2 4.4 35 332-376 2-36 (374)
281 PRK11883 protoporphyrinogen ox 59.2 5.5 0.00012 42.7 1.9 22 330-351 1-22 (451)
282 cd00300 LDH_like L-lactate deh 59.1 28 0.0006 36.6 7.0 112 332-460 1-128 (300)
283 KOG2304 3-hydroxyacyl-CoA dehy 59.1 8.5 0.00018 40.2 3.1 32 330-373 12-43 (298)
284 PRK12409 D-amino acid dehydrog 59.0 12 0.00026 40.0 4.4 33 330-374 2-34 (410)
285 PRK08618 ornithine cyclodeamin 58.6 97 0.0021 32.9 11.1 105 328-459 126-236 (325)
286 cd00377 ICL_PEPM Members of th 57.2 2.3E+02 0.0051 29.0 16.8 44 423-470 183-226 (243)
287 COG0240 GpsA Glycerol-3-phosph 57.0 23 0.0005 38.4 6.1 95 330-444 2-105 (329)
288 PRK11199 tyrA bifunctional cho 56.8 56 0.0012 35.5 9.1 33 329-373 98-131 (374)
289 TIGR03376 glycerol3P_DH glycer 56.7 22 0.00049 38.4 6.0 20 331-350 1-20 (342)
290 TIGR02028 ChlP geranylgeranyl 56.7 12 0.00027 40.4 4.1 31 331-373 2-32 (398)
291 PRK12828 short chain dehydroge 56.6 22 0.00047 34.1 5.3 36 326-373 4-40 (239)
292 PRK14106 murD UDP-N-acetylmura 56.5 15 0.00033 39.9 4.8 36 326-373 2-37 (450)
293 PRK13512 coenzyme A disulfide 56.4 11 0.00024 41.2 3.7 33 331-373 3-35 (438)
294 PLN00112 malate dehydrogenase 56.4 42 0.00091 37.8 8.2 112 329-447 100-229 (444)
295 PRK14852 hypothetical protein; 56.4 23 0.0005 43.5 6.5 38 325-373 328-365 (989)
296 PRK05866 short chain dehydroge 56.2 30 0.00065 35.6 6.6 39 324-373 35-73 (293)
297 KOG0743 AAA+-type ATPase [Post 55.9 19 0.0004 40.7 5.2 103 197-336 241-344 (457)
298 cd01490 Ube1_repeat2 Ubiquitin 55.6 18 0.00039 40.6 5.1 37 331-373 1-37 (435)
299 PF13454 NAD_binding_9: FAD-NA 55.6 11 0.00023 35.5 3.0 36 333-375 1-36 (156)
300 KOG2012 Ubiquitin activating e 55.4 7.1 0.00015 46.8 2.1 130 293-467 412-552 (1013)
301 TIGR02023 BchP-ChlP geranylger 55.1 14 0.0003 39.5 4.1 31 331-373 2-32 (388)
302 TIGR02440 FadJ fatty oxidation 55.0 2E+02 0.0043 34.2 13.8 156 401-578 403-567 (699)
303 PLN02240 UDP-glucose 4-epimera 55.0 29 0.00062 36.0 6.3 107 326-444 2-132 (352)
304 PRK05479 ketol-acid reductoiso 54.9 48 0.001 35.9 8.1 25 326-350 14-38 (330)
305 COG5322 Predicted dehydrogenas 54.9 18 0.0004 38.6 4.7 46 305-350 143-189 (351)
306 KOG1495 Lactate dehydrogenase 54.7 42 0.00092 36.0 7.3 131 324-477 15-169 (332)
307 PF01408 GFO_IDH_MocA: Oxidore 54.5 23 0.0005 30.9 4.7 90 331-441 2-91 (120)
308 PRK01713 ornithine carbamoyltr 54.5 93 0.002 33.6 10.2 137 261-417 92-233 (334)
309 PRK06928 pyrroline-5-carboxyla 54.5 54 0.0012 33.9 8.2 98 330-447 2-101 (277)
310 PRK01438 murD UDP-N-acetylmura 54.3 19 0.0004 39.8 5.0 28 323-350 10-37 (480)
311 PRK12771 putative glutamate sy 54.3 24 0.00052 40.1 6.0 36 326-373 134-169 (564)
312 PRK12829 short chain dehydroge 54.2 47 0.001 32.5 7.4 37 326-373 8-44 (264)
313 PRK07233 hypothetical protein; 54.0 14 0.0003 39.3 3.8 31 331-373 1-31 (434)
314 PRK07236 hypothetical protein; 53.6 19 0.00041 38.4 4.8 24 327-350 4-27 (386)
315 TIGR01316 gltA glutamate synth 53.5 19 0.0004 39.8 4.9 36 326-373 130-165 (449)
316 PF01266 DAO: FAD dependent ox 53.2 19 0.00042 36.4 4.6 33 331-375 1-33 (358)
317 cd01979 Pchlide_reductase_N Pc 53.1 32 0.00069 37.5 6.5 35 316-350 263-297 (396)
318 PRK07819 3-hydroxybutyryl-CoA 52.9 18 0.00038 37.8 4.3 32 330-373 6-37 (286)
319 PRK12769 putative oxidoreducta 52.8 17 0.00037 42.1 4.6 35 327-373 325-359 (654)
320 PRK06847 hypothetical protein; 52.8 18 0.00039 37.9 4.4 22 329-350 4-25 (375)
321 PRK06184 hypothetical protein; 52.7 17 0.00038 40.3 4.5 35 328-374 2-36 (502)
322 KOG2018 Predicted dinucleotide 52.5 17 0.00036 39.6 4.0 40 325-375 70-109 (430)
323 PRK04965 NADH:flavorubredoxin 51.9 14 0.00031 39.2 3.6 36 330-375 3-38 (377)
324 PTZ00245 ubiquitin activating 51.5 15 0.00032 39.0 3.4 73 325-415 22-98 (287)
325 PRK09564 coenzyme A disulfide 51.5 15 0.00033 39.7 3.8 37 330-376 1-37 (444)
326 PRK06046 alanine dehydrogenase 51.4 1.1E+02 0.0023 32.7 9.9 103 328-456 128-236 (326)
327 PRK12810 gltD glutamate syntha 51.4 21 0.00045 39.7 4.8 35 327-373 141-175 (471)
328 PRK12779 putative bifunctional 51.4 20 0.00043 43.8 5.0 40 327-378 304-347 (944)
329 cd01968 Nitrogenase_NifE_I Nit 51.0 24 0.00051 38.6 5.1 86 317-418 275-365 (410)
330 PRK12570 N-acetylmuramic acid- 50.9 59 0.0013 34.5 7.9 37 409-447 127-165 (296)
331 PRK05993 short chain dehydroge 50.9 37 0.0008 34.2 6.2 33 329-373 4-37 (277)
332 PRK08163 salicylate hydroxylas 50.8 19 0.00042 38.1 4.3 22 329-350 4-25 (396)
333 COG1086 Predicted nucleoside-d 50.8 1.7E+02 0.0037 34.3 11.8 124 325-470 112-257 (588)
334 PF03435 Saccharop_dh: Sacchar 50.7 8.1 0.00018 41.4 1.5 91 332-441 1-96 (386)
335 TIGR03026 NDP-sugDHase nucleot 50.5 62 0.0013 35.3 8.2 31 331-373 2-32 (411)
336 TIGR01505 tartro_sem_red 2-hyd 50.4 61 0.0013 33.4 7.8 31 331-373 1-31 (291)
337 PRK07523 gluconate 5-dehydroge 50.3 52 0.0011 32.4 7.0 36 326-373 7-43 (255)
338 PRK06138 short chain dehydroge 50.2 38 0.00083 32.9 6.0 37 326-373 2-38 (252)
339 PRK00683 murD UDP-N-acetylmura 50.1 76 0.0016 34.6 8.8 113 329-483 3-115 (418)
340 PLN02172 flavin-containing mon 49.8 22 0.00048 39.7 4.8 25 326-350 7-31 (461)
341 COG2072 TrkA Predicted flavopr 49.7 22 0.00047 39.5 4.6 36 328-374 7-42 (443)
342 PLN02268 probable polyamine ox 49.6 5.9 0.00013 42.8 0.3 20 331-350 2-21 (435)
343 PRK11559 garR tartronate semia 49.5 75 0.0016 32.7 8.3 32 330-373 3-34 (296)
344 COG0644 FixC Dehydrogenases (f 49.4 21 0.00046 38.5 4.4 35 330-376 4-38 (396)
345 PRK13394 3-hydroxybutyrate deh 49.3 49 0.0011 32.4 6.6 36 326-373 4-40 (262)
346 PRK06475 salicylate hydroxylas 49.2 19 0.00041 38.6 4.0 21 330-350 3-23 (400)
347 PF13450 NAD_binding_8: NAD(P) 49.0 25 0.00055 28.8 3.9 31 334-376 1-31 (68)
348 cd01493 APPBP1_RUB Ubiquitin a 48.7 19 0.00042 40.1 4.1 38 325-373 16-53 (425)
349 TIGR01181 dTDP_gluc_dehyt dTDP 48.6 78 0.0017 31.7 8.1 78 331-420 1-84 (317)
350 PRK07364 2-octaprenyl-6-methox 48.1 20 0.00043 38.2 3.9 33 329-373 18-50 (415)
351 PRK09126 hypothetical protein; 47.9 22 0.00048 37.6 4.2 33 329-373 3-35 (392)
352 PTZ00318 NADH dehydrogenase-li 47.8 16 0.00034 39.9 3.2 36 326-373 7-42 (424)
353 TIGR01790 carotene-cycl lycope 47.7 21 0.00046 37.7 4.0 31 332-374 2-32 (388)
354 PRK09186 flagellin modificatio 47.2 48 0.001 32.5 6.2 35 327-373 2-37 (256)
355 PF13241 NAD_binding_7: Putati 47.2 15 0.00033 32.3 2.5 37 326-374 4-40 (103)
356 PRK04176 ribulose-1,5-biphosph 47.1 23 0.0005 36.4 4.1 35 328-374 24-58 (257)
357 PRK11154 fadJ multifunctional 46.9 2.3E+02 0.0051 33.6 12.7 107 403-518 410-524 (708)
358 TIGR02082 metH 5-methyltetrahy 46.9 2.1E+02 0.0045 36.4 12.7 67 343-424 486-557 (1178)
359 PRK11749 dihydropyrimidine deh 46.9 24 0.00052 38.8 4.4 35 327-373 138-172 (457)
360 PF06690 DUF1188: Protein of u 46.9 38 0.00082 35.4 5.4 145 323-522 38-187 (252)
361 PF04320 DUF469: Protein with 46.8 16 0.00036 33.2 2.6 32 251-282 27-61 (101)
362 TIGR00031 UDP-GALP_mutase UDP- 46.5 25 0.00053 38.6 4.4 31 331-373 3-33 (377)
363 PRK07251 pyridine nucleotide-d 46.4 25 0.00055 38.3 4.5 33 330-374 4-36 (438)
364 TIGR00274 N-acetylmuramic acid 46.4 47 0.001 35.1 6.3 39 408-448 125-165 (291)
365 PRK06416 dihydrolipoamide dehy 46.3 23 0.0005 38.8 4.2 33 330-374 5-37 (462)
366 PRK06753 hypothetical protein; 46.2 25 0.00054 36.9 4.2 20 331-350 2-21 (373)
367 PRK06392 homoserine dehydrogen 45.9 77 0.0017 34.1 7.9 82 331-418 2-90 (326)
368 cd05006 SIS_GmhA Phosphoheptos 45.7 1.2E+02 0.0026 29.0 8.5 22 409-432 101-122 (177)
369 PRK12778 putative bifunctional 45.6 30 0.00065 40.9 5.2 36 326-373 428-463 (752)
370 PRK05441 murQ N-acetylmuramic 45.5 32 0.0007 36.4 5.0 39 408-448 130-170 (299)
371 PRK12831 putative oxidoreducta 45.5 27 0.00058 38.9 4.6 35 327-373 138-172 (464)
372 TIGR03736 PRTRC_ThiF PRTRC sys 45.4 30 0.00065 35.9 4.6 44 328-374 10-55 (244)
373 PRK12266 glpD glycerol-3-phosp 45.4 24 0.00052 39.7 4.2 33 330-374 7-39 (508)
374 PRK12826 3-ketoacyl-(acyl-carr 45.4 69 0.0015 31.0 6.9 36 326-373 3-39 (251)
375 PLN02695 GDP-D-mannose-3',5'-e 45.3 66 0.0014 34.5 7.3 97 328-444 20-137 (370)
376 PRK06182 short chain dehydroge 45.2 39 0.00084 33.8 5.3 77 328-420 2-85 (273)
377 TIGR00441 gmhA phosphoheptose 45.2 1.3E+02 0.0028 28.4 8.5 37 409-447 79-117 (154)
378 PRK06171 sorbitol-6-phosphate 45.1 87 0.0019 31.0 7.7 76 326-419 6-87 (266)
379 PRK12814 putative NADPH-depend 45.1 26 0.00057 40.8 4.5 34 328-373 192-225 (652)
380 PRK07424 bifunctional sterol d 45.0 33 0.00071 38.0 5.1 56 292-373 156-211 (406)
381 PRK11259 solA N-methyltryptoph 45.0 27 0.0006 36.5 4.3 35 329-375 3-37 (376)
382 TIGR01179 galE UDP-glucose-4-e 45.0 85 0.0018 31.5 7.7 97 331-442 1-119 (328)
383 PRK12770 putative glutamate sy 45.0 33 0.00072 36.3 5.0 36 326-373 15-50 (352)
384 PRK07045 putative monooxygenas 45.0 27 0.00058 37.1 4.3 21 330-350 6-26 (388)
385 PRK05749 3-deoxy-D-manno-octul 45.0 56 0.0012 35.1 6.8 37 400-441 312-349 (425)
386 PLN00093 geranylgeranyl diphos 45.0 25 0.00054 39.1 4.2 26 325-350 33-60 (450)
387 PRK09490 metH B12-dependent me 44.9 2E+02 0.0043 36.7 12.1 120 261-423 441-572 (1229)
388 PRK05732 2-octaprenyl-6-methox 44.9 30 0.00065 36.5 4.6 36 329-373 3-38 (395)
389 cd01976 Nitrogenase_MoFe_alpha 44.9 48 0.001 36.6 6.3 87 316-418 287-378 (421)
390 PRK08219 short chain dehydroge 44.8 91 0.002 29.7 7.6 71 330-420 4-82 (227)
391 PLN02676 polyamine oxidase 44.6 56 0.0012 36.7 6.9 23 328-350 25-47 (487)
392 PRK09853 putative selenate red 44.6 27 0.00058 43.2 4.7 35 327-373 537-571 (1019)
393 PF13580 SIS_2: SIS domain; PD 44.5 19 0.00042 33.3 2.8 30 401-432 95-124 (138)
394 TIGR01373 soxB sarcosine oxida 44.5 34 0.00073 36.6 5.0 38 328-375 29-66 (407)
395 PRK14806 bifunctional cyclohex 44.3 54 0.0012 38.4 7.0 83 330-434 4-86 (735)
396 PRK06124 gluconate 5-dehydroge 44.3 74 0.0016 31.2 7.1 39 324-373 6-44 (256)
397 TIGR03088 stp2 sugar transfera 44.3 1.6E+02 0.0035 30.5 9.9 36 401-441 266-301 (374)
398 TIGR02032 GG-red-SF geranylger 44.1 28 0.0006 34.5 4.0 33 331-375 2-34 (295)
399 COG2423 Predicted ornithine cy 44.1 1.2E+02 0.0027 32.9 9.1 121 312-459 115-241 (330)
400 TIGR01377 soxA_mon sarcosine o 43.9 28 0.00062 36.4 4.2 33 331-375 2-34 (380)
401 PRK07067 sorbitol dehydrogenas 43.7 28 0.0006 34.3 3.9 78 326-419 3-90 (257)
402 cd01974 Nitrogenase_MoFe_beta 43.6 26 0.00057 38.7 4.1 104 317-447 291-405 (435)
403 PRK06841 short chain dehydroge 43.4 45 0.00098 32.7 5.4 36 326-373 12-48 (255)
404 COG1063 Tdh Threonine dehydrog 43.2 44 0.00096 35.7 5.6 99 303-419 143-248 (350)
405 PRK10262 thioredoxin reductase 43.1 22 0.00047 36.9 3.2 24 327-350 4-27 (321)
406 PF13407 Peripla_BP_4: Peripla 43.0 85 0.0019 30.6 7.2 144 151-325 52-206 (257)
407 cd01833 XynB_like SGNH_hydrola 42.9 1.2E+02 0.0026 27.6 7.8 68 197-280 18-85 (157)
408 TIGR01282 nifD nitrogenase mol 42.9 29 0.00062 39.0 4.3 137 261-418 267-413 (466)
409 PRK12491 pyrroline-5-carboxyla 42.9 57 0.0012 33.9 6.2 36 330-373 3-38 (272)
410 PRK09987 dTDP-4-dehydrorhamnos 42.8 86 0.0019 32.3 7.5 86 331-444 2-104 (299)
411 COG1748 LYS9 Saccharopine dehy 42.8 44 0.00095 37.1 5.6 85 330-433 2-90 (389)
412 TIGR00292 thiazole biosynthesi 42.6 29 0.00063 35.7 4.0 37 328-376 20-56 (254)
413 PLN02172 flavin-containing mon 42.4 32 0.00068 38.5 4.5 36 327-374 202-237 (461)
414 PLN02463 lycopene beta cyclase 42.3 28 0.00062 38.8 4.1 32 330-373 29-60 (447)
415 cd05007 SIS_Etherase N-acetylm 42.2 1.3E+02 0.0028 31.2 8.6 38 408-447 117-156 (257)
416 TIGR02053 MerA mercuric reduct 42.1 30 0.00064 38.0 4.2 30 332-373 3-32 (463)
417 PF01946 Thi4: Thi4 family; PD 42.1 37 0.00081 35.1 4.6 35 328-374 16-50 (230)
418 PRK07608 ubiquinone biosynthes 42.0 29 0.00062 36.6 3.9 32 330-373 6-37 (388)
419 PRK04690 murD UDP-N-acetylmura 41.9 32 0.0007 38.3 4.5 24 327-350 6-29 (468)
420 PRK13301 putative L-aspartate 41.9 41 0.00088 35.6 4.9 117 330-470 3-122 (267)
421 PRK01747 mnmC bifunctional tRN 41.6 32 0.0007 39.9 4.6 33 330-374 261-293 (662)
422 PRK00048 dihydrodipicolinate r 41.5 1.6E+02 0.0034 30.3 9.1 88 330-442 2-90 (257)
423 TIGR01984 UbiH 2-polyprenyl-6- 41.4 27 0.00058 36.7 3.6 19 332-350 2-20 (382)
424 PRK10157 putative oxidoreducta 41.4 30 0.00064 37.9 4.1 21 330-350 6-26 (428)
425 TIGR01350 lipoamide_DH dihydro 41.4 32 0.00069 37.6 4.3 31 331-373 3-33 (461)
426 PRK08010 pyridine nucleotide-d 41.3 30 0.00064 37.8 4.0 32 330-373 4-35 (441)
427 TIGR01317 GOGAT_sm_gam glutama 41.2 35 0.00075 38.2 4.6 34 328-373 142-175 (485)
428 PF02558 ApbA: Ketopantoate re 41.1 39 0.00086 30.8 4.3 31 332-374 1-31 (151)
429 PRK07478 short chain dehydroge 41.0 90 0.002 30.7 7.1 37 326-373 3-39 (254)
430 TIGR02437 FadB fatty oxidation 41.0 75 0.0016 37.7 7.5 107 403-518 413-527 (714)
431 CHL00076 chlB photochlorophyll 40.9 43 0.00094 38.1 5.4 80 324-417 300-382 (513)
432 PRK14694 putative mercuric red 40.9 35 0.00077 37.6 4.6 34 328-373 5-38 (468)
433 cd04951 GT1_WbdM_like This fam 40.9 2.4E+02 0.0053 28.3 10.3 37 400-441 255-291 (360)
434 COG3349 Uncharacterized conser 40.8 22 0.00048 40.4 3.0 44 330-378 1-51 (485)
435 PRK11101 glpA sn-glycerol-3-ph 40.8 33 0.00071 39.0 4.4 33 329-373 6-38 (546)
436 TIGR03589 PseB UDP-N-acetylglu 40.8 73 0.0016 33.3 6.7 106 327-444 2-125 (324)
437 PRK06912 acoL dihydrolipoamide 40.6 33 0.00072 37.8 4.3 31 331-373 2-32 (458)
438 PRK00711 D-amino acid dehydrog 40.6 34 0.00074 36.5 4.3 31 331-373 2-32 (416)
439 PRK07588 hypothetical protein; 40.4 34 0.00073 36.4 4.2 20 331-350 2-21 (391)
440 COG0499 SAM1 S-adenosylhomocys 40.3 1.4E+02 0.003 33.4 8.7 122 302-456 185-306 (420)
441 PLN02350 phosphogluconate dehy 40.3 86 0.0019 35.8 7.5 97 331-447 8-110 (493)
442 PRK07890 short chain dehydroge 40.3 74 0.0016 31.2 6.3 36 327-373 3-38 (258)
443 PRK08773 2-octaprenyl-3-methyl 40.2 31 0.00068 36.6 3.9 34 329-374 6-39 (392)
444 TIGR03315 Se_ygfK putative sel 40.0 33 0.00071 42.4 4.4 34 328-373 536-569 (1012)
445 COG3380 Predicted NAD/FAD-depe 39.9 32 0.0007 36.9 3.8 32 331-374 3-34 (331)
446 PRK11728 hydroxyglutarate oxid 39.9 37 0.00079 36.3 4.4 34 330-373 3-36 (393)
447 KOG2013 SMT3/SUMO-activating c 39.9 37 0.00081 38.8 4.5 82 325-423 8-92 (603)
448 PRK05976 dihydrolipoamide dehy 39.8 36 0.00079 37.5 4.5 33 329-373 4-36 (472)
449 PRK08244 hypothetical protein; 39.8 34 0.00073 37.9 4.2 32 330-373 3-34 (493)
450 TIGR01988 Ubi-OHases Ubiquinon 39.8 32 0.00069 35.9 3.8 31 332-374 2-32 (385)
451 PRK10892 D-arabinose 5-phospha 39.7 1.2E+02 0.0025 31.9 8.0 84 329-447 47-132 (326)
452 PRK13403 ketol-acid reductoiso 39.7 70 0.0015 34.9 6.4 27 325-351 12-38 (335)
453 COG0569 TrkA K+ transport syst 39.6 41 0.0009 34.0 4.5 98 331-447 2-104 (225)
454 TIGR01408 Ube1 ubiquitin-activ 39.6 25 0.00053 43.4 3.3 39 325-374 20-58 (1008)
455 PRK08849 2-octaprenyl-3-methyl 39.5 38 0.00082 36.1 4.4 32 330-373 4-35 (384)
456 PRK06292 dihydrolipoamide dehy 39.4 38 0.00083 37.0 4.5 32 330-373 4-35 (460)
457 TIGR01789 lycopene_cycl lycope 39.4 44 0.00096 36.0 4.9 36 332-377 2-37 (370)
458 COG0771 MurD UDP-N-acetylmuram 39.3 1.7E+02 0.0036 33.2 9.5 36 326-373 4-39 (448)
459 PRK06185 hypothetical protein; 39.3 35 0.00075 36.4 4.1 35 328-374 5-39 (407)
460 PRK07589 ornithine cyclodeamin 39.3 3.1E+02 0.0067 29.9 11.3 104 328-456 128-238 (346)
461 COG0654 UbiH 2-polyprenyl-6-me 39.3 38 0.00083 36.3 4.5 33 329-373 2-34 (387)
462 PRK13369 glycerol-3-phosphate 39.3 33 0.00071 38.4 4.0 33 330-374 7-39 (502)
463 PRK12809 putative oxidoreducta 39.2 41 0.00088 39.1 4.9 36 327-374 308-343 (639)
464 PRK06200 2,3-dihydroxy-2,3-dih 39.1 38 0.00081 33.6 4.1 37 326-373 3-39 (263)
465 PRK05714 2-octaprenyl-3-methyl 39.0 30 0.00064 37.0 3.5 32 330-373 3-34 (405)
466 cd00316 Oxidoreductase_nitroge 38.8 1.1E+02 0.0025 32.6 7.9 105 317-447 267-376 (399)
467 TIGR03143 AhpF_homolog putativ 38.6 34 0.00075 38.9 4.1 32 331-374 6-37 (555)
468 PLN02653 GDP-mannose 4,6-dehyd 38.5 1.2E+02 0.0026 31.5 7.8 82 326-419 3-93 (340)
469 PLN02852 ferredoxin-NADP+ redu 38.5 23 0.00049 40.2 2.7 42 322-373 19-60 (491)
470 TIGR03364 HpnW_proposed FAD de 38.5 36 0.00079 35.6 4.1 32 331-374 2-33 (365)
471 cd05188 MDR Medium chain reduc 38.5 80 0.0017 30.5 6.2 46 316-373 122-167 (271)
472 PRK08243 4-hydroxybenzoate 3-m 38.4 41 0.00088 36.0 4.5 33 329-373 2-34 (392)
473 PRK04663 murD UDP-N-acetylmura 38.4 1.2E+02 0.0026 33.3 8.2 117 327-483 4-121 (438)
474 PRK08020 ubiF 2-octaprenyl-3-m 38.3 34 0.00075 36.2 3.9 33 329-373 5-37 (391)
475 PRK08013 oxidoreductase; Provi 38.3 39 0.00084 36.3 4.3 33 329-373 3-35 (400)
476 PRK12775 putative trifunctiona 38.2 40 0.00087 41.6 4.8 34 328-373 429-462 (1006)
477 PF12831 FAD_oxidored: FAD dep 38.2 39 0.00084 37.1 4.4 33 332-376 2-34 (428)
478 cd00529 RuvC_resolvase Hollida 38.1 1.9E+02 0.0041 27.5 8.4 72 253-342 41-118 (154)
479 PRK13937 phosphoheptose isomer 38.1 1.2E+02 0.0025 29.7 7.3 22 409-432 106-127 (188)
480 PRK09242 tropinone reductase; 38.0 1.5E+02 0.0032 29.2 8.1 37 326-373 6-42 (257)
481 COG0562 Glf UDP-galactopyranos 38.0 38 0.00081 37.1 4.0 32 331-374 3-34 (374)
482 PLN02568 polyamine oxidase 38.0 19 0.0004 41.2 1.9 24 328-351 4-27 (539)
483 TIGR01862 N2-ase-Ialpha nitrog 37.8 95 0.0021 34.6 7.3 85 319-418 307-396 (443)
484 PRK08265 short chain dehydroge 37.8 43 0.00094 33.4 4.3 37 326-373 3-39 (261)
485 PRK11445 putative oxidoreducta 37.7 30 0.00066 36.5 3.3 20 331-350 3-22 (351)
486 PRK00414 gmhA phosphoheptose i 37.7 1.6E+02 0.0034 29.0 8.2 35 409-445 111-147 (192)
487 COG1252 Ndh NADH dehydrogenase 37.7 32 0.00069 38.3 3.6 35 329-373 3-37 (405)
488 PLN02657 3,8-divinyl protochlo 37.6 1.6E+02 0.0035 32.0 8.9 109 322-442 53-180 (390)
489 COG1086 Predicted nucleoside-d 37.6 62 0.0014 37.7 5.9 77 325-419 246-335 (588)
490 PRK07326 short chain dehydroge 37.5 1E+02 0.0022 29.7 6.8 35 327-373 4-39 (237)
491 PRK07538 hypothetical protein; 37.4 39 0.00083 36.4 4.1 20 331-350 2-21 (413)
492 TIGR01318 gltD_gamma_fam gluta 37.3 49 0.0011 36.9 5.0 34 328-373 140-173 (467)
493 PRK09466 metL bifunctional asp 36.7 96 0.0021 37.6 7.5 108 328-442 457-571 (810)
494 PRK14477 bifunctional nitrogen 36.6 64 0.0014 39.5 6.2 83 316-417 307-397 (917)
495 PRK06834 hypothetical protein; 36.6 44 0.00096 37.4 4.6 35 328-374 2-36 (488)
496 TIGR03325 BphB_TodD cis-2,3-di 36.3 43 0.00094 33.2 4.0 36 326-373 2-38 (262)
497 KOG3851 Sulfide:quinone oxidor 36.3 26 0.00057 38.4 2.6 138 328-472 38-230 (446)
498 PRK05249 soluble pyridine nucl 36.3 41 0.00089 36.8 4.2 34 329-374 5-38 (461)
499 PF00743 FMO-like: Flavin-bind 35.9 31 0.00066 39.5 3.2 21 330-350 2-22 (531)
500 PRK08850 2-octaprenyl-6-methox 35.9 45 0.00097 35.7 4.3 33 329-373 4-36 (405)
No 1
>KOG1257 consensus NADP+-dependent malic enzyme [Energy production and conversion]
Probab=100.00 E-value=1.1e-218 Score=1723.46 Aligned_cols=544 Identities=66% Similarity=1.086 Sum_probs=539.2
Q ss_pred ccccccccccccCCCCCcCCCCCHHHHhhcccCCCCCCcccCHHHHHHHHHHHHhcCCCchhHHHHhhhhhhhhhhhhHH
Q 007802 44 TVSVASGYTLLRDPRHNKGLAFTENERDAHYLRGLLPPALMNQELQEKRLMHNLRQYKVPLQRYVAMMDLQERNERLFYK 123 (589)
Q Consensus 44 ~~~~~~G~~ll~~p~~NKgtaFt~~ER~~l~l~GLlPp~v~t~e~Q~~R~~~~~~~~~~~l~ky~~L~~L~~~Ne~LFy~ 123 (589)
..+.++|+++|+||++|||+|||.+|||+|||||||||.|.|+|+|++||+.+|+++++||+||+||++||+|||+|||+
T Consensus 25 ~~~~~~g~~ll~~p~~NKglAFTl~ERq~l~i~GLLPp~v~t~d~Q~~r~~~~l~~~~~~l~ky~~L~~L~~rNerLfY~ 104 (582)
T KOG1257|consen 25 VESKKRGYDLLRDPRYNKGLAFTLEERQRLGIHGLLPPVVRTQDEQALRCMNNLRSLTSPLAKYIYLMDLQDRNERLFYR 104 (582)
T ss_pred cccccCChhhccCCCcccccccCHHHHHhhCccccCCccccCHHHHHHHHHHHHHhccchHHHHHHHHHHHHhhhHHHHH
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhcccccCCcccchhhHHHHHHHhhhhcCCCcccccccccccHHHHHhcCCCCCeeEEEEecCcccccCCCCCCCccc
Q 007802 124 LLIDNVEELLPVVYTPTVGEACQKYGSIFRRPQGLYISLKEKGKILEVLKNWPERNIQVIVVTDGERILGLGDLGCQGMG 203 (589)
Q Consensus 124 ll~~~~~e~lpivYTPtVg~ac~~~s~i~r~p~Glyls~~d~g~i~~il~nwp~~~v~iiVVTDG~rILGLGDlG~~Gmg 203 (589)
+|++|++|+||||||||||+|||+||+|||+|+||||||+|+|||.++|+|||.++|++||||||||||||||||++|||
T Consensus 105 ~l~~nie~~~PIvYTPTvG~acq~y~~i~r~p~Glfisi~D~Ghi~~~l~nWp~~~V~~IvVTDGerILGLGDlG~~Gmg 184 (582)
T KOG1257|consen 105 LLIDNIEELLPIVYTPTVGLACQQYGLIFRRPQGLFISIKDKGHIKQVLKNWPERNVKAIVVTDGERILGLGDLGVNGMG 184 (582)
T ss_pred HHHhhHHHhCCeeecCcHHHHHHHhhhhhccCceeEEEecccchHHHHHHhCCccceeEEEEeCCCceecccccccCccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhhHHHHhhhcCCCCCCeeeEEeecCCCccccccCcccccccccCCChhhHHHHHHHHHHHHHHhcCCceeeEeecCC
Q 007802 204 IPVGKLSLYTALGGLRPSACLPITIDVGTNNEQLLNDEFYIGLRQKRATGQEYAELLQEFMTAVKQNYGEKVLIQFEDFA 283 (589)
Q Consensus 204 I~iGKl~LY~a~gGI~P~~~lPI~LDvGTnn~~LL~Dp~YlG~r~~R~~g~~y~~fidefv~av~~~fGp~~lIq~EDf~ 283 (589)
||+|||+||||||||+|++|||||||||||||+||+||+|+|+|++|++|++||+|+||||+||.++|||+++||||||+
T Consensus 185 IpvgKL~Lyta~~GI~P~~cLPV~LDVGTNNe~Ll~DplYiGLr~~R~~g~eYd~~~dEFm~Av~~~yG~~~lIqFEDF~ 264 (582)
T KOG1257|consen 185 IPVGKLALYTALGGIRPSRCLPVCLDVGTNNEKLLNDPLYIGLRQRRVRGKEYDEFLDEFMEAVVQRYGPNTLIQFEDFA 264 (582)
T ss_pred ceecHHHHHHHhcCCChhhceeEEEeccCChHHHhcCccccccccccccccHHHHHHHHHHHHHHHHhCcceEEEehhcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccHHHHHHHHcCCCceeccCCCchHHHHHHHHHHHHHHhCCCCCCceEEEeCcChHHHHHHHHHHHHHHhccCCCHHhh
Q 007802 284 NHNAFELLSKYSSSHLVFNDDIQGTASVVLAGILSALKLVGGTLADQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEA 363 (589)
Q Consensus 284 ~~~Af~iL~ryr~~~~~FnDDiQGTaaV~lAgll~Alr~~g~~l~d~riv~~GAGsAg~GiA~ll~~~~~~~~G~s~eeA 363 (589)
++|||++|+|||.++|||||||||||+|+|||||+|+|++|++|+|++|||+|||+||+|||+||+.+|+++ |+|+|||
T Consensus 265 ~~nAfrlL~kYr~~~c~FNDDIQGTaaValAgllaa~rit~~~lsd~~ilf~GAG~A~~GIA~l~v~~m~~~-Gl~~eeA 343 (582)
T KOG1257|consen 265 NHNAFRLLEKYRNKYCMFNDDIQGTAAVALAGLLAALRITGKPLSDHVILFLGAGEAALGIANLIVMAMVKE-GLSEEEA 343 (582)
T ss_pred chhHHHHHHHhccccceecccccchhHHHHHHHHHHHHHhCCccccceEEEecCchHHhhHHHHHHHHHHHc-CCCHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999999996 9999999
Q ss_pred cCeEEEEcccCcccCCcccCCchhchhhhcccCCCCCHHHHHhccCCcEEEeecCCCCCCCHHHHHHHHcCCCCcEEEec
Q 007802 364 RKKIWLVDSKGLIVSSRKESLQHFKKPWAHEHAPIKSLLDAVKAIKPTMLMGTSGVGKTFTKEVVEAMASFNEKPVIFAL 443 (589)
Q Consensus 364 ~~~i~~vD~~GLv~~~r~~~l~~~k~~fa~~~~~~~~L~e~V~~vkPtvLIG~S~~~g~Fteevv~~Ma~~~erPIIFaL 443 (589)
+|+|||+|++|||+++|+.+++++|++|||+++++++|+|||+.||||||||+|++||+|||||||+|+++|||||||||
T Consensus 344 ~kkIwlvD~~GLi~~~r~~~l~~~~~~fAk~~~~~~~L~e~V~~vKPtvLiG~S~~~g~Fteevl~~Ma~~~erPiIFal 423 (582)
T KOG1257|consen 344 RKKIWLVDSKGLITKGRKASLTEEKKPFAKDHEEIKDLEEAVKEVKPTVLIGASGVGGAFTEEVLRAMAKSNERPIIFAL 423 (582)
T ss_pred hccEEEEecCceeeccccCCCChhhccccccChHHHHHHHHHHhcCCcEEEecccCCccCCHHHHHHHHhcCCCceEEec
Confidence 99999999999999999878999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCHHHHhccccCcEEEeeCCCCCcceeCCeeeCCCCccccccchhhhHHHHHhCCcccCHHHHHHHHHHHHh
Q 007802 444 SNPTSQSECTAEEAYTWSKGQAIFASGSPFDPVEYNGKVFVPGQGNNAYIFPGLGLGLIISGAIRVRDEMLLAASEALAA 523 (589)
Q Consensus 444 SNPt~~~E~t~eda~~wT~GraifAsGSPf~pv~~~G~~~~p~Q~NN~~iFPGiglG~~~~~a~~Itd~m~~aAA~aLA~ 523 (589)
||||+++||||||||+||+|||||||||||+||+|+||+|+||||||+|+|||||||+++|++++|+|+||++||++||+
T Consensus 424 SNPT~~aECtae~ay~~t~Gr~ifaSGSPF~pV~~~gK~~~pgQ~NN~yiFPGi~Lg~vlsg~~~i~D~mfl~Aae~LA~ 503 (582)
T KOG1257|consen 424 SNPTSKAECTAEQAYKWTKGRAIFASGSPFPPVEYNGKVYVPGQGNNAYIFPGIGLGVVLSGARRIPDEMFLAAAEALAE 503 (582)
T ss_pred CCCccccccCHHHHhhhcCCcEEEecCCCCCCceeCCcEecccCCceeEecchHHHHHHHcCCccCCHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCcccCCCCCccCCCCCchhhHHHHHHHHHHHHHHcCCCCCCCCchhHHHHHHhCCccCCCCCC
Q 007802 524 QVTQEHFDKGLIYPPFTNIRKISAHIAAKVAAKAYDLGLASRLPRPKDLVSYAESCMYSPMYRSY 588 (589)
Q Consensus 524 ~v~~~~l~~g~l~P~l~~ireVs~~VA~aVa~~A~~~GvA~~~~~p~dl~~~i~~~mw~P~Y~~~ 588 (589)
.++++++++|.||||+++||+||.+||++|+++|+++|+|+..|.|+|+++|++++||+|+|+++
T Consensus 504 ~v~~e~~~~g~lyPpl~~ir~iS~~Ia~aV~~~a~~~glA~~~p~P~d~~~~~~~~~y~~~Y~~~ 568 (582)
T KOG1257|consen 504 QVSEEELEKGRLYPPLSNIREISANIAAAVLKYAYEEGLATRYPEPKDKEKFIEESMYNPEYRNS 568 (582)
T ss_pred hCCHhHhhcCCcCCChhHHHHHHHHHHHHHHHHHHhcCccccCCCcccHHHHHHhccCCcccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999875
No 2
>PRK13529 malate dehydrogenase; Provisional
Probab=100.00 E-value=2.9e-211 Score=1701.51 Aligned_cols=541 Identities=50% Similarity=0.860 Sum_probs=530.8
Q ss_pred cccccccccccCCCCCcCCCCCHHHHhhcccCCCCCCcccCHHHHHHHHHHHHhcCCCchhHHHHhhhhhhhhhhhhHHH
Q 007802 45 VSVASGYTLLRDPRHNKGLAFTENERDAHYLRGLLPPALMNQELQEKRLMHNLRQYKVPLQRYVAMMDLQERNERLFYKL 124 (589)
Q Consensus 45 ~~~~~G~~ll~~p~~NKgtaFt~~ER~~l~l~GLlPp~v~t~e~Q~~R~~~~~~~~~~~l~ky~~L~~L~~~Ne~LFy~l 124 (589)
.+..+|.++|+||++|||||||.+||++|||+|||||+|+|+|+|++|||.||++++++|+||+||++||+|||+|||++
T Consensus 12 ~~~~~G~~lL~~p~~NKgtaFt~~ER~~lgl~GLLPp~v~t~e~Q~~R~~~~~~~~~~~l~ky~~L~~L~~~Ne~Lfy~l 91 (563)
T PRK13529 12 YTPLRGPALLNNPLLNKGTAFTEEEREEFGLEGLLPPAVETLEEQAERAYRQYQSKPTDLEKHIYLRNLQDRNETLFYRL 91 (563)
T ss_pred eecccchhhhcCcccccccCCCHHHHHhcCCCCCCCCCccCHHHHHHHHHHHHhcCCChHHHHHHHHHHHhcCchhhHHH
Confidence 34679999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhcccccCCcccchhhHHHHHHHhhhhcCCCcccccccccccHHHHHhcCCCCCeeEEEEecCcccccCCCCCCCcccc
Q 007802 125 LIDNVEELLPVVYTPTVGEACQKYGSIFRRPQGLYISLKEKGKILEVLKNWPERNIQVIVVTDGERILGLGDLGCQGMGI 204 (589)
Q Consensus 125 l~~~~~e~lpivYTPtVg~ac~~~s~i~r~p~Glyls~~d~g~i~~il~nwp~~~v~iiVVTDG~rILGLGDlG~~GmgI 204 (589)
|++|++||||||||||||+|||+||++||+|||||||++|+|+|.++|+|||.+||++||||||||||||||||++||||
T Consensus 92 l~~~~ee~~PivYTPTVG~ac~~~s~~~r~p~Glyis~~d~g~i~~~l~nwp~~~v~viVVTDG~rILGLGDlG~~Gm~I 171 (563)
T PRK13529 92 LSDHLEEMMPIIYTPTVGEACERFSHIYRRPRGLFISYDDRDRIEDILQNAPNRDIKLIVVTDGERILGIGDQGIGGMGI 171 (563)
T ss_pred HHhCHHHhCCeeecccHHHHHHHHhhcccCCCceEeccCCHHHHHHHHhcCCcccceEEEEeCCceeeeccccCCCcccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhHHHHhhhcCCCCCCeeeEEeecCCCccccccCcccccccccCCChhhHHHHHHHHHHHHHHhcCCceeeEeecCCC
Q 007802 205 PVGKLSLYTALGGLRPSACLPITIDVGTNNEQLLNDEFYIGLRQKRATGQEYAELLQEFMTAVKQNYGEKVLIQFEDFAN 284 (589)
Q Consensus 205 ~iGKl~LY~a~gGI~P~~~lPI~LDvGTnn~~LL~Dp~YlG~r~~R~~g~~y~~fidefv~av~~~fGp~~lIq~EDf~~ 284 (589)
|+||++|||+||||||++|||||||||||||+||+||+|+|+||+|++|++||+|+||||++|+.+| |+++||||||++
T Consensus 172 ~~GKl~Ly~a~aGI~P~~~lPI~LDvGTnNe~Ll~DP~YlG~r~~R~~g~eY~~f~defv~av~~~~-P~~~I~~EDf~~ 250 (563)
T PRK13529 172 PIGKLSLYTACGGIDPARTLPVVLDVGTNNEQLLNDPLYLGWRHPRIRGEEYDEFVDEFVQAVKRRF-PNALLQFEDFAQ 250 (563)
T ss_pred cccHHHHhhccCCCChhheeceEEecCCCchhhccCccccCcCCCCCchHHHHHHHHHHHHHHHHhC-CCeEEehhhcCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999 999999999999
Q ss_pred ccHHHHHHHHcCCCceeccCCCchHHHHHHHHHHHHHHhCCCCCCceEEEeCcChHHHHHHHHHHHHHHhccCCCHHhhc
Q 007802 285 HNAFELLSKYSSSHLVFNDDIQGTASVVLAGILSALKLVGGTLADQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEAR 364 (589)
Q Consensus 285 ~~Af~iL~ryr~~~~~FnDDiQGTaaV~lAgll~Alr~~g~~l~d~riv~~GAGsAg~GiA~ll~~~~~~~~G~s~eeA~ 364 (589)
+|||++|+|||+++|||||||||||+|+|||||||+|++|++|+||||||+|||+||+|||+||+++|++ +|+|+|||+
T Consensus 251 ~~af~iL~ryr~~i~~FnDDiQGTaaV~LAgll~A~r~~g~~l~d~riv~~GAGsAgiGia~ll~~~~~~-~Gl~~eeA~ 329 (563)
T PRK13529 251 KNARRILERYRDEICTFNDDIQGTGAVTLAGLLAALKITGEPLSDQRIVFLGAGSAGCGIADQIVAAMVR-EGLSEEEAR 329 (563)
T ss_pred chHHHHHHHhccCCCeeccccchHHHHHHHHHHHHHHHhCCChhhcEEEEECCCHHHHHHHHHHHHHHHH-cCCChhHhc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999998 599999999
Q ss_pred CeEEEEcccCcccCCcccCCchhchhhhcccCCC---------CCHHHHHhccCCcEEEeecCCCCCCCHHHHHHHHcCC
Q 007802 365 KKIWLVDSKGLIVSSRKESLQHFKKPWAHEHAPI---------KSLLDAVKAIKPTMLMGTSGVGKTFTKEVVEAMASFN 435 (589)
Q Consensus 365 ~~i~~vD~~GLv~~~r~~~l~~~k~~fa~~~~~~---------~~L~e~V~~vkPtvLIG~S~~~g~Fteevv~~Ma~~~ 435 (589)
+|||+||++|||+++|.+ |+++|++|||+..+. .+|+|||+++|||||||+|+++|+|||||||+|+++|
T Consensus 330 ~~i~~vD~~GLl~~~r~~-l~~~k~~fa~~~~~~~~~~~~~~~~~L~e~v~~~kPtvLIG~S~~~g~Ft~evv~~Ma~~~ 408 (563)
T PRK13529 330 KRFFMVDRQGLLTDDMPD-LLDFQKPYARKREELADWDTEGDVISLLEVVRNVKPTVLIGVSGQPGAFTEEIVKEMAAHC 408 (563)
T ss_pred CeEEEEcCCCeEeCCCCc-chHHHHHHhhhcccccccccccCCCCHHHHHhccCCCEEEEecCCCCCCCHHHHHHHHhcC
Confidence 999999999999999965 999999999975442 6899999999999999999999999999999999999
Q ss_pred CCcEEEecCCCCCCCCCCHHHHhccccCcEEEeeCCCCCcceeCCeeeCCCCccccccchhhhHHHHHhCCcccCHHHHH
Q 007802 436 EKPVIFALSNPTSQSECTAEEAYTWSKGQAIFASGSPFDPVEYNGKVFVPGQGNNAYIFPGLGLGLIISGAIRVRDEMLL 515 (589)
Q Consensus 436 erPIIFaLSNPt~~~E~t~eda~~wT~GraifAsGSPf~pv~~~G~~~~p~Q~NN~~iFPGiglG~~~~~a~~Itd~m~~ 515 (589)
||||||||||||++|||||||||+||+|||||||||||+||+|+|++++||||||+|||||||||+++++|++|||+||+
T Consensus 409 erPIIFaLSNPt~~aE~tpe~a~~~T~Grai~AtGspf~pv~~~G~~~~p~Q~NN~~iFPGiglGa~~~~a~~Itd~m~~ 488 (563)
T PRK13529 409 ERPIIFPLSNPTSRAEATPEDLIAWTDGRALVATGSPFAPVEYNGKTYPIGQCNNAYIFPGLGLGVIASGARRVTDGMLM 488 (563)
T ss_pred CCCEEEECCCcCCCcccCHHHHHHhhcCCEEEEECCCCCCeeeCCeEeccCcCcceeecccchhhhhhcCCcCCCHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhccCcccCCCCCccCCCCCchhhHHHHHHHHHHHHHHcCCCCCCCCchhHHHHHHhCCccCCCCCCC
Q 007802 516 AASEALAAQVTQEHFDKGLIYPPFTNIRKISAHIAAKVAAKAYDLGLASRLPRPKDLVSYAESCMYSPMYRSYR 589 (589)
Q Consensus 516 aAA~aLA~~v~~~~l~~g~l~P~l~~ireVs~~VA~aVa~~A~~~GvA~~~~~p~dl~~~i~~~mw~P~Y~~~~ 589 (589)
+||++||+++++++++++.|||++++||+||.+||.||+++|+++|+|+. +.|+|+.+||+++||+|+|+|++
T Consensus 489 aAA~alA~~v~~~~l~~~~l~P~~~~ir~vs~~VA~aVa~~A~~~GlA~~-~~~~~~~~~i~~~~w~P~Y~~~~ 561 (563)
T PRK13529 489 AAAHALADCVPLAKPGEGALLPPVEDIREVSRAIAIAVAKAAIEEGLARE-TSDEDLEQAIEDNMWQPEYRPYR 561 (563)
T ss_pred HHHHHHHhhCccccCCCCeeECCCcchhhhHHHHHHHHHHHHHHhCCCCC-CCHHHHHHHHHhcCcCCCCcccc
Confidence 99999999999999999999999999999999999999999999999985 67889999999999999999874
No 3
>PLN03129 NADP-dependent malic enzyme; Provisional
Probab=100.00 E-value=1.8e-210 Score=1700.01 Aligned_cols=543 Identities=76% Similarity=1.216 Sum_probs=535.3
Q ss_pred cccccccccCCCCCcCCCCCHHHHhhcccCCCCCCcccCHHHHHHHHHHHHhcCCCchhHHHHhhhhhhhhhhhhHHHhh
Q 007802 47 VASGYTLLRDPRHNKGLAFTENERDAHYLRGLLPPALMNQELQEKRLMHNLRQYKVPLQRYVAMMDLQERNERLFYKLLI 126 (589)
Q Consensus 47 ~~~G~~ll~~p~~NKgtaFt~~ER~~l~l~GLlPp~v~t~e~Q~~R~~~~~~~~~~~l~ky~~L~~L~~~Ne~LFy~ll~ 126 (589)
.++|+++|+||++|||||||.+||++|||+|||||+|+|+|+|++|||.||++++++|+||+||++||++||+|||++++
T Consensus 39 ~~~G~~ll~~p~~NKgtaFt~~ER~~lgl~GLlP~~v~t~e~Q~~R~~~~~~~~~~~l~ky~~L~~L~~~Ne~Lfy~ll~ 118 (581)
T PLN03129 39 VASGYDLLRDPRYNKGLAFTETERDRLGLRGLLPPAVLSQELQVKRFMENLRALESPLAKYRALMDLQERNERLFYRVLI 118 (581)
T ss_pred CCcchhhhcCcccccccCCCHHHHhhcCCccCCCCCcCCHHHHHHHHHHHHhccCCcHHHHHHHHHHHhhCcccchhhhh
Confidence 56999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcccccCCcccchhhHHHHHHHhhhhcCCCcccccccccccHHHHHhcCCCCCeeEEEEecCcccccCCCCCCCcccchh
Q 007802 127 DNVEELLPVVYTPTVGEACQKYGSIFRRPQGLYISLKEKGKILEVLKNWPERNIQVIVVTDGERILGLGDLGCQGMGIPV 206 (589)
Q Consensus 127 ~~~~e~lpivYTPtVg~ac~~~s~i~r~p~Glyls~~d~g~i~~il~nwp~~~v~iiVVTDG~rILGLGDlG~~GmgI~i 206 (589)
+|++||||||||||||+||++||++||+|||||||++|+|+|+++++|||.++|++||||||||||||||||++||||||
T Consensus 119 ~~~~e~lpiiYTPtVg~ac~~~s~~~r~prGlyis~~d~~~i~~~l~n~p~~~v~viVVTDG~rILGLGDlG~~Gm~I~~ 198 (581)
T PLN03129 119 DNIEELLPIVYTPTVGEACQKYGSLFRRPRGLYISLKDKGRVLSMLKNWPERDVQVIVVTDGERILGLGDLGVQGMGIPV 198 (581)
T ss_pred cCHHHhCCeeeCCcHHHHHHHHHHhhcCCCceeecccCHHHHHHHHhcCCCcCceEEEEecCcceeeccccCCCccccch
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHhhhcCCCCCCeeeEEeecCCCccccccCcccccccccCCChhhHHHHHHHHHHHHHHhcCCceeeEeecCCCcc
Q 007802 207 GKLSLYTALGGLRPSACLPITIDVGTNNEQLLNDEFYIGLRQKRATGQEYAELLQEFMTAVKQNYGEKVLIQFEDFANHN 286 (589)
Q Consensus 207 GKl~LY~a~gGI~P~~~lPI~LDvGTnn~~LL~Dp~YlG~r~~R~~g~~y~~fidefv~av~~~fGp~~lIq~EDf~~~~ 286 (589)
||++|||+||||||++|||||||+|||||+||+||+|+||||+|++|++||+|+||||++|+.+|||+++||||||+++|
T Consensus 199 GKl~Ly~a~aGI~P~~~lPI~LDvGTnNe~LL~DP~YlG~r~~Rv~g~eY~~~~defv~av~~~fGp~~~I~~EDf~~~~ 278 (581)
T PLN03129 199 GKLDLYTAAGGIRPSAVLPVCIDVGTNNEKLLNDPFYIGLRQPRLTGEEYDELVDEFMEAVKQRWGPKVLVQFEDFANKN 278 (581)
T ss_pred hHHHHHHhhcCCChhhccceEEecCCCchhhccCccccCcCCCCCchhhHHHhHHHHHHHHHHHhCCccEEehhhcCCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCCceeccCCCchHHHHHHHHHHHHHHhCCCCCCceEEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCe
Q 007802 287 AFELLSKYSSSHLVFNDDIQGTASVVLAGILSALKLVGGTLADQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKK 366 (589)
Q Consensus 287 Af~iL~ryr~~~~~FnDDiQGTaaV~lAgll~Alr~~g~~l~d~riv~~GAGsAg~GiA~ll~~~~~~~~G~s~eeA~~~ 366 (589)
||+||+|||+++|||||||||||+|+|||||||+|++|++|+||||||+|||+||+|||+||+++|++++|+|+|||++|
T Consensus 279 af~iL~ryr~~i~~FnDDiQGTaaV~lAgll~A~r~~g~~l~d~riv~~GAGsAgigia~ll~~~~~~~~Gls~eeA~~~ 358 (581)
T PLN03129 279 AFRLLQRYRTTHLCFNDDIQGTAAVALAGLLAALRATGGDLADQRILFAGAGEAGTGIAELIALAMSRQTGISEEEARKR 358 (581)
T ss_pred HHHHHHHhccCCCEeccccchHHHHHHHHHHHHHHHhCCchhhceEEEECCCHHHHHHHHHHHHHHHhhcCCChhhhcCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999987569999999999
Q ss_pred EEEEcccCcccCCcccCCchhchhhhcccCCCCCHHHHHhccCCcEEEeecCCCCCCCHHHHHHHHcCCCCcEEEecCCC
Q 007802 367 IWLVDSKGLIVSSRKESLQHFKKPWAHEHAPIKSLLDAVKAIKPTMLMGTSGVGKTFTKEVVEAMASFNEKPVIFALSNP 446 (589)
Q Consensus 367 i~~vD~~GLv~~~r~~~l~~~k~~fa~~~~~~~~L~e~V~~vkPtvLIG~S~~~g~Fteevv~~Ma~~~erPIIFaLSNP 446 (589)
||+||++|||+++|.++|+++|++||++.++.++|+|+|+++|||||||+|+++|+||||+||+|+++|+||||||||||
T Consensus 359 i~~vD~~GLi~~~r~~~l~~~k~~fa~~~~~~~~L~e~v~~vkptvLIG~S~~~g~Ft~evi~~Ma~~~~rPIIFaLSNP 438 (581)
T PLN03129 359 IWLVDSKGLVTKSRKDSLQPFKKPFAHDHEPGASLLEAVKAIKPTVLIGLSGVGGTFTKEVLEAMASLNERPIIFALSNP 438 (581)
T ss_pred EEEEcCCCeEeCCCCccChHHHHHHHhhcccCCCHHHHHhccCCCEEEEecCCCCCCCHHHHHHHHhcCCCCEEEECCCC
Confidence 99999999999999766999999999987778899999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCHHHHhccccCcEEEeeCCCCCcceeCCeeeCCCCccccccchhhhHHHHHhCCcccCHHHHHHHHHHHHhccC
Q 007802 447 TSQSECTAEEAYTWSKGQAIFASGSPFDPVEYNGKVFVPGQGNNAYIFPGLGLGLIISGAIRVRDEMLLAASEALAAQVT 526 (589)
Q Consensus 447 t~~~E~t~eda~~wT~GraifAsGSPf~pv~~~G~~~~p~Q~NN~~iFPGiglG~~~~~a~~Itd~m~~aAA~aLA~~v~ 526 (589)
|++|||+|||||+||+|||||||||||+||+|+||+++||||||+|||||||||+++++|++|||+||++||++||++++
T Consensus 439 t~~~E~~pe~a~~~T~G~ai~AtGSPf~pv~~~Gr~~~p~Q~NN~~iFPGiglGal~~~a~~Itd~m~~aAA~aLA~~v~ 518 (581)
T PLN03129 439 TSKAECTAEEAYTWTGGRAIFASGSPFDPVEYNGKTFHPGQANNAYIFPGIGLGALLSGAIRVTDDMLLAAAEALAAQVT 518 (581)
T ss_pred CCCcCcCHHHHHHhhcCCEEEEeCCCCCCeeeCCeeecCccccceeeccchhhHHHhcCCcCCCHHHHHHHHHHHHHhCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCCccCCCCCchhhHHHHHHHHHHHHHHcCCCCCCCCchhHHHHHHhCCccCCCCCCC
Q 007802 527 QEHFDKGLIYPPFTNIRKISAHIAAKVAAKAYDLGLASRLPRPKDLVSYAESCMYSPMYRSYR 589 (589)
Q Consensus 527 ~~~l~~g~l~P~l~~ireVs~~VA~aVa~~A~~~GvA~~~~~p~dl~~~i~~~mw~P~Y~~~~ 589 (589)
++++..+.|||++++||+||.+||.||+++|+++|+|+..++|+++.+||+++||+|+|+|++
T Consensus 519 ~~~l~~~~l~P~~~~ir~vs~~VA~aVa~~A~~~G~A~~~~~~~~~~~~i~~~mw~P~Y~~~~ 581 (581)
T PLN03129 519 EEELAKGAIYPPFSRIRDISAHVAAAVAAKAYEEGLATRLPRPEDLVEYAESCMYSPVYRPYR 581 (581)
T ss_pred cccCCCCeecCCCcchhHHHHHHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHcCcCCCCCCCC
Confidence 999999999999999999999999999999999999987677899999999999999999875
No 4
>PTZ00317 NADP-dependent malic enzyme; Provisional
Probab=100.00 E-value=4.2e-209 Score=1683.41 Aligned_cols=540 Identities=51% Similarity=0.860 Sum_probs=527.1
Q ss_pred cccccccccccccCCCCCcCCCCCHHHHhhcccCCCCCCcccCHHHHHHHHHHHHhcCCCchhHHHHhhhhhhhhhhhhH
Q 007802 43 WTVSVASGYTLLRDPRHNKGLAFTENERDAHYLRGLLPPALMNQELQEKRLMHNLRQYKVPLQRYVAMMDLQERNERLFY 122 (589)
Q Consensus 43 ~~~~~~~G~~ll~~p~~NKgtaFt~~ER~~l~l~GLlPp~v~t~e~Q~~R~~~~~~~~~~~l~ky~~L~~L~~~Ne~LFy 122 (589)
-+++..+|.++|+||++|||||||.+||++|||||||||+|+|+|+|++|||+||+++++||+||+||++||+|||+|||
T Consensus 12 ~~~~~~~G~~lL~~p~~NKgtAFt~~ER~~l~l~GLlPp~v~t~e~Q~~R~~~~~~~~~~~l~Ky~~L~~L~~~Ne~Lfy 91 (559)
T PTZ00317 12 KVPSNARGVDVLRNRFLNKGTAFTAEEREHLGIEGLLPPTVETLEQQVERLWTQFNRIETPINKYQFLRNIHDTNETLFY 91 (559)
T ss_pred ccccCCcchhhhcCcccccccCCCHHHHHhcCCCCCCCCCccCHHHHHHHHHHHHhhCCChHHHHHHHHHHhhcCchHHH
Confidence 34566899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhcccccCCcccchhhHHHHHHHhhhhcCCCcccccccccccHHHHHhcCCCCCeeEEEEecCcccccCCCCCCCcc
Q 007802 123 KLLIDNVEELLPVVYTPTVGEACQKYGSIFRRPQGLYISLKEKGKILEVLKNWPERNIQVIVVTDGERILGLGDLGCQGM 202 (589)
Q Consensus 123 ~ll~~~~~e~lpivYTPtVg~ac~~~s~i~r~p~Glyls~~d~g~i~~il~nwp~~~v~iiVVTDG~rILGLGDlG~~Gm 202 (589)
++|++|++||||||||||||+||++||++||+|||||+|++|+|+|+++|+|||.++|++||||||||||||||||++||
T Consensus 92 ~ll~~~~ee~lpivYTPtVg~ac~~~s~~~r~p~Gly~s~~drg~i~~~l~Nwp~~~v~viVVTDG~rILGLGDlG~~Gm 171 (559)
T PTZ00317 92 ALLLKYLKELLPIIYTPTVGEACQNYSNLFQRDRGLYLSRAHKGKIREILKNWPYDNVDVIVITDGSRILGLGDLGANGM 171 (559)
T ss_pred HHHHhCHHHhcceecCcchHHHHHHHHhcccccCceEEeecCcchHHHHHhcCCccCceEEEEeccccccccCCcccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchhhhHHHHhhhcCCCCCCeeeEEeecCCCccccccCcccccccccCCChhhHHHHHHHHHHHHHHhcCCceeeEeecC
Q 007802 203 GIPVGKLSLYTALGGLRPSACLPITIDVGTNNEQLLNDEFYIGLRQKRATGQEYAELLQEFMTAVKQNYGEKVLIQFEDF 282 (589)
Q Consensus 203 gI~iGKl~LY~a~gGI~P~~~lPI~LDvGTnn~~LL~Dp~YlG~r~~R~~g~~y~~fidefv~av~~~fGp~~lIq~EDf 282 (589)
|||+||++|||+||||||++|||||||||||||+||+||+|+||||+|++|++||+|+||||++|+++| |+++||||||
T Consensus 172 ~I~~GKl~Ly~a~aGI~P~~~lPI~LDvGTnN~~LL~DPlYlG~r~~R~~g~eY~~f~defv~av~~~~-P~~~Iq~EDf 250 (559)
T PTZ00317 172 GISIGKLSLYVAGGGINPSRVLPVVLDVGTNNEKLLNDPLYLGLREKRLDDDEYYELLDEFMEAVSSRW-PNAVVQFEDF 250 (559)
T ss_pred cccccHHHHHHhhcCCChhhccceEEecCCChhhhccCcccccccCCCCChhhHHHHHHHHHHHHHHhC-CCeEEehhhc
Confidence 999999999999999999999999999999999999999999999999999999999999999999999 9999999999
Q ss_pred CCccHHHHHHHHcCCCceeccCCCchHHHHHHHHHHHHHHhCCCCCCceEEEeCcChHHHHHHHHHHHHHHhccCCCHHh
Q 007802 283 ANHNAFELLSKYSSSHLVFNDDIQGTASVVLAGILSALKLVGGTLADQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEE 362 (589)
Q Consensus 283 ~~~~Af~iL~ryr~~~~~FnDDiQGTaaV~lAgll~Alr~~g~~l~d~riv~~GAGsAg~GiA~ll~~~~~~~~G~s~ee 362 (589)
+++|||++|+|||+++|||||||||||+|+|||||||+|++|++|+||||||+|||+||+|||+||+++|++ +|+|+||
T Consensus 251 ~~~naf~iL~kyr~~i~~FnDDiQGTaaV~lAgll~Alr~~g~~l~d~riv~~GAGsAgiGia~ll~~~m~~-~Gls~ee 329 (559)
T PTZ00317 251 SNNHCFDLLERYQNKYRCFNDDIQGTGAVIAAGFLNALKLSGVPPEEQRIVFFGAGSAAIGVANNIADLAAE-YGVTREE 329 (559)
T ss_pred CCccHHHHHHHhccCCCEecccchhHHHHHHHHHHHHHHHhCCChhhcEEEEECCCHHHHHHHHHHHHHHHH-cCCChhH
Confidence 999999999999999999999999999999999999999999999999999999999999999999999987 5999999
Q ss_pred hcCeEEEEcccCcccCCcccCCchhchhhhccc--CC---CCCHHHHHhccCCcEEEeecCCCCCCCHHHHHHHHcCCCC
Q 007802 363 ARKKIWLVDSKGLIVSSRKESLQHFKKPWAHEH--AP---IKSLLDAVKAIKPTMLMGTSGVGKTFTKEVVEAMASFNEK 437 (589)
Q Consensus 363 A~~~i~~vD~~GLv~~~r~~~l~~~k~~fa~~~--~~---~~~L~e~V~~vkPtvLIG~S~~~g~Fteevv~~Ma~~~er 437 (589)
|++|||+||++|||+++|.++|+++|++|||+. .+ ..+|+|||+.+|||||||+|+++|+|||||||+|+++|+|
T Consensus 330 A~~~i~~vD~~GLl~~~r~~~l~~~k~~fa~~~~~~~~~~~~~L~e~v~~~KPtvLIG~S~~~g~Ft~evv~~Ma~~~~r 409 (559)
T PTZ00317 330 ALKSFYLVDSKGLVTTTRGDKLAKHKVPFARTDISAEDSSLKTLEDVVRFVKPTALLGLSGVGGVFTEEVVKTMASNVER 409 (559)
T ss_pred hcCeEEEEcCCCeEeCCCCccccHHHHHHhccccccccccCCCHHHHHhccCCCEEEEecCCCCCCCHHHHHHHHhcCCC
Confidence 999999999999999999766999999999974 33 5799999999999999999999999999999999999999
Q ss_pred cEEEecCCCCCCCCCCHHHHhccccCcEEEeeCCCCCcceeCCeeeCCCCccccccchhhhHHHHHhCCcccCHHHHHHH
Q 007802 438 PVIFALSNPTSQSECTAEEAYTWSKGQAIFASGSPFDPVEYNGKVFVPGQGNNAYIFPGLGLGLIISGAIRVRDEMLLAA 517 (589)
Q Consensus 438 PIIFaLSNPt~~~E~t~eda~~wT~GraifAsGSPf~pv~~~G~~~~p~Q~NN~~iFPGiglG~~~~~a~~Itd~m~~aA 517 (589)
||||||||||++|||||||||+||+|||||||||||+||+|+||+++||||||+|||||||||+++++|++|||+||++|
T Consensus 410 PIIFaLSNPt~~aE~tpeda~~~T~Grai~AtGspf~pv~~~G~~~~p~Q~NN~~iFPGiglG~l~~~a~~Itd~m~~aA 489 (559)
T PTZ00317 410 PIIFPLSNPTSKAECTAEDAYKWTNGRAIVASGSPFPPVTLNGKTIQPSQGNNLYVFPGVGLGCAIAQPSYIPDEMLIAA 489 (559)
T ss_pred CEEEECCCCCCCCCcCHHHHHhhccCCEEEEECCCCCCcccCCeeeccCcCcceeeccchhhhhHhhcccCCCHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhccCcccCCCCCccCCCCCchhhHHHHHHHHHHHHHHcCCCCC--CCC-chhHHHHHHhCCccCC
Q 007802 518 SEALAAQVTQEHFDKGLIYPPFTNIRKISAHIAAKVAAKAYDLGLASR--LPR-PKDLVSYAESCMYSPM 584 (589)
Q Consensus 518 A~aLA~~v~~~~l~~g~l~P~l~~ireVs~~VA~aVa~~A~~~GvA~~--~~~-p~dl~~~i~~~mw~P~ 584 (589)
|++||+++++++++.+.|||++++||+||.+||.||+++|+++|+|+. .|+ ++|+.+||+++||+|.
T Consensus 490 A~aLA~~v~~~~l~~~~l~P~~~~ir~vs~~VA~aV~~~A~~~G~A~~~~~~~~~~~~~~~i~~~~w~P~ 559 (559)
T PTZ00317 490 AASLATLVSEEDLREGKLYPPLEDIREISAHIAVDVIEEAQEMGIAKNKDLPDNRDELLALVKDRMWVPK 559 (559)
T ss_pred HHHHHhhCCccccCCCeeeCCCccHhHHHHHHHHHHHHHHHHhCCCccCCCCCCHHHHHHHHHhcCcCCC
Confidence 999999999999999999999999999999999999999999999975 343 3689999999999995
No 5
>COG0281 SfcA Malic enzyme [Energy production and conversion]
Probab=100.00 E-value=1.3e-119 Score=950.61 Aligned_cols=424 Identities=38% Similarity=0.560 Sum_probs=381.2
Q ss_pred ccCHHHHHHHHHHHHhcCCC-chhHHHHhhhhhhhhhhhhHHHhhhcccccCCcccchhhHHHHHHHhhhhcCCCccccc
Q 007802 83 LMNQELQEKRLMHNLRQYKV-PLQRYVAMMDLQERNERLFYKLLIDNVEELLPVVYTPTVGEACQKYGSIFRRPQGLYIS 161 (589)
Q Consensus 83 v~t~e~Q~~R~~~~~~~~~~-~l~ky~~L~~L~~~Ne~LFy~ll~~~~~e~lpivYTPtVg~ac~~~s~i~r~p~Glyls 161 (589)
++|+| |.+|+|.++..+.+ +|++|.|| ++|+.+||.++..|..|+|||+||||||++|++||+.|+.++
T Consensus 1 v~t~~-q~~~~~~~~~~~~~~aL~~h~~~----~~gki~~~~~~~~~~~~dl~l~YTPgVa~~~~~i~~d~~~~~----- 70 (432)
T COG0281 1 VETIE-QAERAYEQYEQLKTEALDKHEYL----DPGKILIYPTVPLHTQEDLPLAYTPGVAEACKAISEDPRKAY----- 70 (432)
T ss_pred CccHH-HHHHHHHHHhhhhhhhHHHhccC----CCCeEEEEEcccccCHhhcCcccCCchHHHHHHHHhCcchhh-----
Confidence 57889 99999999999988 99999999 899999999999999999999999999999999998888775
Q ss_pred ccccccHHHHHhcCCCCCeeEEEEecCcccccCCCCC-CCcccchhhhHHHHhhhcCCCCCCeeeEEeecCCCccccccC
Q 007802 162 LKEKGKILEVLKNWPERNIQVIVVTDGERILGLGDLG-CQGMGIPVGKLSLYTALGGLRPSACLPITIDVGTNNEQLLND 240 (589)
Q Consensus 162 ~~d~g~i~~il~nwp~~~v~iiVVTDG~rILGLGDlG-~~GmgI~iGKl~LY~a~gGI~P~~~lPI~LDvGTnn~~LL~D 240 (589)
.++.+++++|||||||||||||||| .+||+||+||++|||+||||| +|||+||+||||+
T Consensus 71 ------------~yt~~~n~vaVvTDgtaVLGLGniGp~ag~pVmeGKa~Lfk~faGid---~~pI~ld~~~~~e----- 130 (432)
T COG0281 71 ------------SYTARGNLVAVVTDGTAVLGLGNIGPLAGKPVMEGKAVLFKAFAGID---VLPIELDVGTNNE----- 130 (432)
T ss_pred ------------hcCCCCceEEEEECCceeecccccccccCcchhhhHHHHHHHhcCCC---ceeeEeeCCChHH-----
Confidence 4456667999999999999999999 679999999999999999999 9999999999877
Q ss_pred cccccccccCCChhhHHHHHHHHHHHHHHhcCCceeeEeecCCCccHHH--HHHHHcCCCceeccCCCchHHHHHHHHHH
Q 007802 241 EFYIGLRQKRATGQEYAELLQEFMTAVKQNYGEKVLIQFEDFANHNAFE--LLSKYSSSHLVFNDDIQGTASVVLAGILS 318 (589)
Q Consensus 241 p~YlG~r~~R~~g~~y~~fidefv~av~~~fGp~~lIq~EDf~~~~Af~--iL~ryr~~~~~FnDDiQGTaaV~lAgll~ 318 (589)
+++||++++++||. |++||++.|.||. .+.|||.+||||||||||||+|+||||+|
T Consensus 131 -------------------i~~~Vkal~p~Fgg---inLedi~ap~cf~ie~~lr~~~~IPvFhDDqqGTaiv~lA~lln 188 (432)
T COG0281 131 -------------------IIEFVKALEPTFGG---INLEDIDAPRCFAIEERLRYRMNIPVFHDDQQGTAIVTLAALLN 188 (432)
T ss_pred -------------------HHHHHHHhhhcCCC---cceeecccchhhHHHHHHhhcCCCCcccccccHHHHHHHHHHHH
Confidence 89999999999955 5555555555555 55567789999999999999999999999
Q ss_pred HHHHhCCCCCCceEEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEcccCcccCCccc-CCchhchhhhc-ccC
Q 007802 319 ALKLVGGTLADQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLIVSSRKE-SLQHFKKPWAH-EHA 396 (589)
Q Consensus 319 Alr~~g~~l~d~riv~~GAGsAg~GiA~ll~~~~~~~~G~s~eeA~~~i~~vD~~GLv~~~r~~-~l~~~k~~fa~-~~~ 396 (589)
|+|++|++|+|+||||+|||+||+||++||+.++++ .+|||+||++|+|+++|.+ .++++|..+|. +..
T Consensus 189 alk~~gk~l~d~kiv~~GAGAAgiaia~~l~~~g~~---------~~~i~~~D~~G~l~~~r~~~~~~~~k~~~a~~~~~ 259 (432)
T COG0281 189 ALKLTGKKLKDQKIVINGAGAAGIAIADLLVAAGVK---------EENIFVVDRKGLLYDGREDLTMNQKKYAKAIEDTG 259 (432)
T ss_pred HHHHhCCCccceEEEEeCCcHHHHHHHHHHHHhCCC---------cccEEEEecCCcccCCCcccccchHHHHHHHhhhc
Confidence 999999999999999999999999999999987544 2899999999999999965 36777777775 444
Q ss_pred CCCCHHHHHhccCCcEEEeecCCCCCCCHHHHHHHHcCCCCcEEEecCCCCCCCCCCHHHHhccccCcEEEeeCCCCCcc
Q 007802 397 PIKSLLDAVKAIKPTMLMGTSGVGKTFTKEVVEAMASFNEKPVIFALSNPTSQSECTAEEAYTWSKGQAIFASGSPFDPV 476 (589)
Q Consensus 397 ~~~~L~e~V~~vkPtvLIG~S~~~g~Fteevv~~Ma~~~erPIIFaLSNPt~~~E~t~eda~~wT~GraifAsGSPf~pv 476 (589)
..++ .+++ .+||+|||+|++ |+||+|+||+|++ +|||||||||| +|++||||.+|++|++|+|||||
T Consensus 260 ~~~~-~~~~--~~adv~iG~S~~-G~~t~e~V~~Ma~---~PiIfalaNP~--pEi~Pe~a~~~~~~aaivaTGrs---- 326 (432)
T COG0281 260 ERTL-DLAL--AGADVLIGVSGV-GAFTEEMVKEMAK---HPIIFALANPT--PEITPEDAKEWGDGAAIVATGRS---- 326 (432)
T ss_pred cccc-cccc--cCCCEEEEcCCC-CCcCHHHHHHhcc---CCEEeecCCCC--ccCCHHHHhhcCCCCEEEEeCCC----
Confidence 4443 4444 569999999998 8999999999985 49999999999 99999999999999999999975
Q ss_pred eeCCeeeCCCCccccccchhhhHHHHHhCCcccCHHHHHHHHHHHHhccCcccCCCCCccCCCCCchhhHHHHHHHHHHH
Q 007802 477 EYNGKVFVPGQGNNAYIFPGLGLGLIISGAIRVRDEMLLAASEALAAQVTQEHFDKGLIYPPFTNIRKISAHIAAKVAAK 556 (589)
Q Consensus 477 ~~~G~~~~p~Q~NN~~iFPGiglG~~~~~a~~Itd~m~~aAA~aLA~~v~~~~l~~g~l~P~l~~ireVs~~VA~aVa~~ 556 (589)
++|+|+||+|+|||||+|++++||++|||+|+++||+|||++++++.. .+.|+|+++++|.+|. ||.||+++
T Consensus 327 ------d~PnQvNNvL~FPgIfrGaLd~rA~~ItdeM~~AAa~AiA~~~~~~~~-~~~iiP~~~d~r~~~~-vA~AVa~a 398 (432)
T COG0281 327 ------DYPNQVNNVLIFPGIFRGALDVRAKTITDEMKIAAAEAIADLAREEVL-EEYIIPPPFDPRVISR-VAVAVAKA 398 (432)
T ss_pred ------CCcccccceeEcchhhhhhHhhccccCCHHHHHHHHHHHHhhccccCC-cCCCCCCCCchhHHHH-HHHHHHHH
Confidence 555699999999999999999999999999999999999999887655 7899999999999998 99999999
Q ss_pred HHHcCCCCCCCCc-hhHHHHHHhCCccCCCCCC
Q 007802 557 AYDLGLASRLPRP-KDLVSYAESCMYSPMYRSY 588 (589)
Q Consensus 557 A~~~GvA~~~~~p-~dl~~~i~~~mw~P~Y~~~ 588 (589)
|.++|+|+..+.+ +++.++++..+|.|.|.++
T Consensus 399 A~~~GvA~~~~~~~~~~~~~~~~~~~~~~~~~~ 431 (432)
T COG0281 399 AMEEGVARRPIDDEEAYEQALEARLWKPEYRMK 431 (432)
T ss_pred HHHcCCccCCCCCHHHHHHHHHHHhcCcccccC
Confidence 9999999865544 4699999999999999875
No 6
>PRK12861 malic enzyme; Reviewed
Probab=100.00 E-value=2.4e-110 Score=940.93 Aligned_cols=370 Identities=31% Similarity=0.515 Sum_probs=336.8
Q ss_pred cccCCcccchhhHHHHHHHhhhhcCCCcccccccccccHHHHHhcCCCCCeeEEEEecCcccccCCCCCCCc-ccchhhh
Q 007802 130 EELLPVVYTPTVGEACQKYGSIFRRPQGLYISLKEKGKILEVLKNWPERNIQVIVVTDGERILGLGDLGCQG-MGIPVGK 208 (589)
Q Consensus 130 ~e~lpivYTPtVg~ac~~~s~i~r~p~Glyls~~d~g~i~~il~nwp~~~v~iiVVTDG~rILGLGDlG~~G-mgI~iGK 208 (589)
.+.|.++|||||+++|++ |+++|+++| .|+.+.+.++|||||||||||||+|++| ||||+||
T Consensus 34 ~~dl~l~YtPgVa~~c~~---i~~~p~~~~--------------~~t~r~n~v~VvtdG~~vLGLGdiG~~a~~pvmeGK 96 (764)
T PRK12861 34 QRDLALAYTPGVASACEE---IAADPLNAF--------------RFTSRGNLVGVITNGTAVLGLGNIGALASKPVMEGK 96 (764)
T ss_pred hHHceeecCCchHHHHHH---HHhChHhhh--------------hhhccCcEEEEEecchhhccCCCcCcccccchHHHH
Confidence 455999999999999999 889999997 5555666799999999999999999997 9999999
Q ss_pred HHHHhhhcCCCCCCeeeEEeecCCCccccccCcccccccccCCChhhHHHHHHHHHHHHHHhcCCceeeEeecCCCccHH
Q 007802 209 LSLYTALGGLRPSACLPITIDVGTNNEQLLNDEFYIGLRQKRATGQEYAELLQEFMTAVKQNYGEKVLIQFEDFANHNAF 288 (589)
Q Consensus 209 l~LY~a~gGI~P~~~lPI~LDvGTnn~~LL~Dp~YlG~r~~R~~g~~y~~fidefv~av~~~fGp~~lIq~EDf~~~~Af 288 (589)
++|||+||||| ++|+|||| +|| |+|| |||++++++||. ||||||++||||
T Consensus 97 ~~L~~~~agid-------~~di~~~~----~dp---------------d~~v-~~v~a~~~~fg~---i~lED~~~p~~f 146 (764)
T PRK12861 97 AVLFKKFAGID-------VFDIEINE----TDP---------------DKLV-DIIAGLEPTFGG---INLEDIKAPECF 146 (764)
T ss_pred HHHHhhccCCC-------ccccccCC----CCH---------------HHHH-HHHHHHHhhcCC---ceeeeccCchHH
Confidence 99999999999 56666666 577 7888 999999999977 999999999999
Q ss_pred HHHHHHcC--CCceeccCCCchHHHHHHHHHHHHHHhCCCCCCceEEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCe
Q 007802 289 ELLSKYSS--SHLVFNDDIQGTASVVLAGILSALKLVGGTLADQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKK 366 (589)
Q Consensus 289 ~iL~ryr~--~~~~FnDDiQGTaaV~lAgll~Alr~~g~~l~d~riv~~GAGsAg~GiA~ll~~~~~~~~G~s~eeA~~~ 366 (589)
+||+|||+ ++|||||||||||+|+|||||||+|++|++|+||||||+|||+||+|||++|+. .|++++ |
T Consensus 147 ~il~~~~~~~~ipvf~DD~qGTa~v~lA~llnal~~~gk~l~d~~iv~~GAGaAg~~ia~~l~~-----~G~~~~----~ 217 (764)
T PRK12861 147 TVERKLRERMKIPVFHDDQHGTAITVSAAFINGLKVVGKSIKEVKVVTSGAGAAALACLDLLVD-----LGLPVE----N 217 (764)
T ss_pred HHHHHHHhcCCCCeeccccchHHHHHHHHHHHHHHHhCCChhHcEEEEECHhHHHHHHHHHHHH-----cCCChh----h
Confidence 99999998 699999999999999999999999999999999999999999999999999976 499854 9
Q ss_pred EEEEcccCcccCCcccCCchhchhhhcccCCCCCHHHHHhccCCcEEEeecCCCCCCCHHHHHHHHcCCCCcEEEecCCC
Q 007802 367 IWLVDSKGLIVSSRKESLQHFKKPWAHEHAPIKSLLDAVKAIKPTMLMGTSGVGKTFTKEVVEAMASFNEKPVIFALSNP 446 (589)
Q Consensus 367 i~~vD~~GLv~~~r~~~l~~~k~~fa~~~~~~~~L~e~V~~vkPtvLIG~S~~~g~Fteevv~~Ma~~~erPIIFaLSNP 446 (589)
||+||++|||+++|.+.|+++|++||++. +..+|+|+|++ ||||||+|+ +|+||+|+|++|+ +||||||||||
T Consensus 218 i~~~D~~Gli~~~r~~~l~~~k~~~a~~~-~~~~L~eai~~--advliG~S~-~g~ft~e~v~~Ma---~~PIIFaLsNP 290 (764)
T PRK12861 218 IWVTDIEGVVYRGRTTLMDPDKERFAQET-DARTLAEVIGG--ADVFLGLSA-GGVLKAEMLKAMA---ARPLILALANP 290 (764)
T ss_pred EEEEcCCCeeeCCCcccCCHHHHHHHhhc-CCCCHHHHHhc--CCEEEEcCC-CCCCCHHHHHHhc---cCCEEEECCCC
Confidence 99999999999999766999999999985 55799999998 899999998 8999999999998 59999999999
Q ss_pred CCCCCCCHHHHhccccCcEEEeeCCCCCcceeCCeeeCCCCccccccchhhhHHHHHhCCcccCHHHHHHHHHHHHhccC
Q 007802 447 TSQSECTAEEAYTWSKGQAIFASGSPFDPVEYNGKVFVPGQGNNAYIFPGLGLGLIISGAIRVRDEMLLAASEALAAQVT 526 (589)
Q Consensus 447 t~~~E~t~eda~~wT~GraifAsGSPf~pv~~~G~~~~p~Q~NN~~iFPGiglG~~~~~a~~Itd~m~~aAA~aLA~~v~ 526 (589)
| |||+||||++ |+|+|||||| |+++|||+||+|+|||||+|+++++|++|||+|+++||++||++++
T Consensus 291 t--pE~~pe~a~~-~~g~aivaTG----------rs~~pnQ~NN~l~FPgi~~Gal~~~a~~I~~~M~~aAa~alA~~~~ 357 (764)
T PRK12861 291 T--PEIFPELAHA-TRDDVVIATG----------RSDYPNQVNNVLCFPYIFRGALDVGATTITREMEIAAVHAIAGLAE 357 (764)
T ss_pred C--ccCCHHHHHh-cCCCEEEEeC----------CcCCCCccceeeecchhhHHHHHcCCccCCHHHHHHHHHHHHhhCC
Confidence 9 8999999987 9999999997 7999999999999999999999999999999999999999999999
Q ss_pred cccCC------------CCC--ccCCCCCchhhHHHHHHHHHHHHHHcCCCCCCCCchhHHHHHHh
Q 007802 527 QEHFD------------KGL--IYPPFTNIRKISAHIAAKVAAKAYDLGLASRLPRPKDLVSYAES 578 (589)
Q Consensus 527 ~~~l~------------~g~--l~P~l~~ireVs~~VA~aVa~~A~~~GvA~~~~~p~dl~~~i~~ 578 (589)
++++. .+. |+|+..+ ++||.+||.||+++|+++|+|+. +. +|+.+|+++
T Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~iiP~~~~-~~v~~~VA~aVa~~a~~~GvA~~-~~-~~~~~~~~~ 420 (764)
T PRK12861 358 EEQNDVVAAAYGAYDVSFGPQYLIPKPFD-PRLIVRIAPAVAKAAMEGGVATR-PI-ADLDAYVEQ 420 (764)
T ss_pred cccCHHHHHhhccccccCCCCCCCCCCCC-hhHHHHHHHHHHHHHHHhCCCCC-Cc-hhHHHHHHH
Confidence 87533 444 4596555 68999999999999999999985 32 566666654
No 7
>PRK12862 malic enzyme; Reviewed
Probab=100.00 E-value=1.6e-109 Score=939.03 Aligned_cols=369 Identities=30% Similarity=0.485 Sum_probs=339.1
Q ss_pred cccCCcccchhhHHHHHHHhhhhcCCCcccccccccccHHHHHhcCCCCCeeEEEEecCcccccCCCCCCCc-ccchhhh
Q 007802 130 EELLPVVYTPTVGEACQKYGSIFRRPQGLYISLKEKGKILEVLKNWPERNIQVIVVTDGERILGLGDLGCQG-MGIPVGK 208 (589)
Q Consensus 130 ~e~lpivYTPtVg~ac~~~s~i~r~p~Glyls~~d~g~i~~il~nwp~~~v~iiVVTDG~rILGLGDlG~~G-mgI~iGK 208 (589)
.+.|.++|||||+++|++ |+++|+++| .|+.+.+.++|||||||||||||+|++| ||||+||
T Consensus 38 ~~dl~~~ytpgv~~~~~~---i~~~~~~~~--------------~~t~~~n~v~vvtdg~~vLGlGd~G~~~~~pv~egK 100 (763)
T PRK12862 38 QRDLALAYSPGVAAPCLE---IAADPANAA--------------RYTSRGNLVAVVSNGTAVLGLGNIGPLASKPVMEGK 100 (763)
T ss_pred HHHceeeeCCchHHHHHH---HHhChHhhh--------------hcccCCcEEEEEechhhhccccccCcccccchHHHH
Confidence 455999999999999999 778998888 6777888999999999999999999996 9999999
Q ss_pred HHHHhhhcCCCCCCeeeEEeecCCCccccccCcccccccccCCChhhHHHHHHHHHHHHHHhcCCc-eeeEeecCCCccH
Q 007802 209 LSLYTALGGLRPSACLPITIDVGTNNEQLLNDEFYIGLRQKRATGQEYAELLQEFMTAVKQNYGEK-VLIQFEDFANHNA 287 (589)
Q Consensus 209 l~LY~a~gGI~P~~~lPI~LDvGTnn~~LL~Dp~YlG~r~~R~~g~~y~~fidefv~av~~~fGp~-~lIq~EDf~~~~A 287 (589)
++|||+||||| ++|| ||||+ || ||||++|+.+| |+ ..||||||++|||
T Consensus 101 ~~l~~~~~gi~---~~~i----~~~~~----d~-------------------d~~v~~v~~~~-p~f~~i~~ED~~~~~~ 149 (763)
T PRK12862 101 AVLFKKFAGID---VFDI----ELDES----DP-------------------DKLVEIVAALE-PTFGGINLEDIKAPEC 149 (763)
T ss_pred HHHHHhhcCCC---cccc----ccCCC----CH-------------------HHHHHHHHHhC-CCcceeeeecccCchH
Confidence 99999999999 5555 55565 65 89999999999 88 7999999999999
Q ss_pred HHHHHHHcCC--CceeccCCCchHHHHHHHHHHHHHHhCCCCCCceEEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcC
Q 007802 288 FELLSKYSSS--HLVFNDDIQGTASVVLAGILSALKLVGGTLADQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARK 365 (589)
Q Consensus 288 f~iL~ryr~~--~~~FnDDiQGTaaV~lAgll~Alr~~g~~l~d~riv~~GAGsAg~GiA~ll~~~~~~~~G~s~eeA~~ 365 (589)
|+||+|||++ ||||||||||||+|+||||+||+|++|++|+||||||+|||+||+|||+||+. .|+++ +
T Consensus 150 f~i~~~~~~~~~ip~f~DD~~GTa~v~la~l~~a~~~~~~~~~~~~iv~~GaGaag~~~a~~l~~-----~G~~~----~ 220 (763)
T PRK12862 150 FYIERELRERMKIPVFHDDQHGTAIIVAAALLNGLKLVGKDIEDVKLVASGAGAAALACLDLLVS-----LGVKR----E 220 (763)
T ss_pred HHHHHHHHhcCCCceEecCcccHHHHHHHHHHHHHHHhCCChhhcEEEEEChhHHHHHHHHHHHH-----cCCCc----c
Confidence 9999999987 89999999999999999999999999999999999999999999999999987 39874 8
Q ss_pred eEEEEcccCcccCCcccCCchhchhhhcccCCCCCHHHHHhccCCcEEEeecCCCCCCCHHHHHHHHcCCCCcEEEecCC
Q 007802 366 KIWLVDSKGLIVSSRKESLQHFKKPWAHEHAPIKSLLDAVKAIKPTMLMGTSGVGKTFTKEVVEAMASFNEKPVIFALSN 445 (589)
Q Consensus 366 ~i~~vD~~GLv~~~r~~~l~~~k~~fa~~~~~~~~L~e~V~~vkPtvLIG~S~~~g~Fteevv~~Ma~~~erPIIFaLSN 445 (589)
||||||++|||+++|.+.|+++|++||++. +..+|+|+|+. ||||||+|+ +|+||+|+|++|+ +|||||||||
T Consensus 221 ~i~~~D~~G~i~~~r~~~l~~~~~~~a~~~-~~~~l~e~~~~--~~v~iG~s~-~g~~~~~~v~~M~---~~piifalsN 293 (763)
T PRK12862 221 NIWVTDIKGVVYEGRTELMDPWKARYAQKT-DARTLAEVIEG--ADVFLGLSA-AGVLKPEMVKKMA---PRPLIFALAN 293 (763)
T ss_pred cEEEEcCCCeeeCCCCccccHHHHHHhhhc-ccCCHHHHHcC--CCEEEEcCC-CCCCCHHHHHHhc---cCCEEEeCCC
Confidence 999999999999999756999999999985 55799999998 999999999 8999999999998 8999999999
Q ss_pred CCCCCCCCHHHHhccccCcEEEeeCCCCCcceeCCeeeCCCCccccccchhhhHHHHHhCCcccCHHHHHHHHHHHHhcc
Q 007802 446 PTSQSECTAEEAYTWSKGQAIFASGSPFDPVEYNGKVFVPGQGNNAYIFPGLGLGLIISGAIRVRDEMLLAASEALAAQV 525 (589)
Q Consensus 446 Pt~~~E~t~eda~~wT~GraifAsGSPf~pv~~~G~~~~p~Q~NN~~iFPGiglG~~~~~a~~Itd~m~~aAA~aLA~~v 525 (589)
|| |||+||||++||+| |||||| |+++|||+||+|+|||||+|+++++|++|||+|+++||++||+++
T Consensus 294 P~--~E~~p~~a~~~~~~-~i~atG----------rs~~p~Q~NN~~~FPgi~~g~l~~~a~~i~~~m~~aaa~ala~~~ 360 (763)
T PRK12862 294 PT--PEILPEEARAVRPD-AIIATG----------RSDYPNQVNNVLCFPYIFRGALDVGATTINEEMKIAAVRAIAELA 360 (763)
T ss_pred Cc--ccCCHHHHHHhcCC-EEEEEC----------CcCCCCcccceeeccchhhhHHhcCCeeCCHHHHHHHHHHHHhcc
Confidence 99 89999999999999 999998 799999999999999999999999999999999999999999999
Q ss_pred Cccc--------------CCCCCccCCCCCchhhHHHHHHHHHHHHHHcCCCCCCCCchhHHHHHHh
Q 007802 526 TQEH--------------FDKGLIYPPFTNIRKISAHIAAKVAAKAYDLGLASRLPRPKDLVSYAES 578 (589)
Q Consensus 526 ~~~~--------------l~~g~l~P~l~~ireVs~~VA~aVa~~A~~~GvA~~~~~p~dl~~~i~~ 578 (589)
++++ +..+.|||+..+ ++||..||.||+++|+++|+|+. + .+|+.+|+++
T Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~~i~P~~~~-~~v~~~va~aVa~~a~~~g~a~~-~-~~~~~~~~~~ 424 (763)
T PRK12862 361 REEQSDVVAAAYGGEDLSFGPDYLIPKPFD-PRLILKIAPAVAQAAMDSGVATR-P-IEDMDAYREQ 424 (763)
T ss_pred cccCCHHHHHhhccccccCCCCcccCCCCC-hhHHHHHHHHHHHHHHHhCCCCC-C-chhHHHHHHH
Confidence 9873 445569996666 78999999999999999999985 3 3467777654
No 8
>PRK07232 bifunctional malic enzyme oxidoreductase/phosphotransacetylase; Reviewed
Probab=100.00 E-value=4.3e-108 Score=923.26 Aligned_cols=368 Identities=32% Similarity=0.510 Sum_probs=337.4
Q ss_pred cccCCcccchhhHHHHHHHhhhhcCCCcccccccccccHHHHHhcCCCCCeeEEEEecCcccccCCCCCCC-cccchhhh
Q 007802 130 EELLPVVYTPTVGEACQKYGSIFRRPQGLYISLKEKGKILEVLKNWPERNIQVIVVTDGERILGLGDLGCQ-GMGIPVGK 208 (589)
Q Consensus 130 ~e~lpivYTPtVg~ac~~~s~i~r~p~Glyls~~d~g~i~~il~nwp~~~v~iiVVTDG~rILGLGDlG~~-GmgI~iGK 208 (589)
.+.|+++|||||+++|++ |+++|+++| ++.+|| +.++|||||+|||||||+|++ |||||+||
T Consensus 30 ~~dl~~~Ytpgv~~~c~~---i~~~~~~~~-~~t~~~-------------n~v~vvtdg~~vLGlGd~G~~a~~pv~egK 92 (752)
T PRK07232 30 QRDLSLAYSPGVAAPCLE---IAKDPADAY-KYTARG-------------NLVAVISNGTAVLGLGNIGALASKPVMEGK 92 (752)
T ss_pred hhhcceecCCchHHHHHH---HHhChhhcc-ccccCC-------------cEEEEEccchhhccccccccccCccHHHHH
Confidence 455999999999999995 889999999 555555 469999999999999999999 89999999
Q ss_pred HHHHhhhcCCCCCCeeeEEeecCCCccccccCcccccccccCCChhhHHHHHHHHHHHHHHhcCCce-eeEeecCCCccH
Q 007802 209 LSLYTALGGLRPSACLPITIDVGTNNEQLLNDEFYIGLRQKRATGQEYAELLQEFMTAVKQNYGEKV-LIQFEDFANHNA 287 (589)
Q Consensus 209 l~LY~a~gGI~P~~~lPI~LDvGTnn~~LL~Dp~YlG~r~~R~~g~~y~~fidefv~av~~~fGp~~-lIq~EDf~~~~A 287 (589)
++|||+||||| ++| +||||+ | +||||++|+.+| |+. +||||||++|||
T Consensus 93 ~~l~~~~~gid---~~~----i~~~~~----d-------------------~de~v~~v~~~~-p~~g~i~~ED~~~p~~ 141 (752)
T PRK07232 93 GVLFKKFAGID---VFD----IEVDEE----D-------------------PDKFIEAVAALE-PTFGGINLEDIKAPEC 141 (752)
T ss_pred HHHHHhhcCCC---ccc----cccCCC----C-------------------HHHHHHHHHHhC-CCccEEeeeecCCchH
Confidence 99999999999 555 555566 3 699999999999 775 999999999999
Q ss_pred HHHHHHHcCC--CceeccCCCchHHHHHHHHHHHHHHhCCCCCCceEEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcC
Q 007802 288 FELLSKYSSS--HLVFNDDIQGTASVVLAGILSALKLVGGTLADQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARK 365 (589)
Q Consensus 288 f~iL~ryr~~--~~~FnDDiQGTaaV~lAgll~Alr~~g~~l~d~riv~~GAGsAg~GiA~ll~~~~~~~~G~s~eeA~~ 365 (589)
|+||+|||++ +|||||||||||+|+||||+||+|++|++|+|+||||+|||+||+|||+||+. .|++ ++
T Consensus 142 f~i~~~~~~~~~ip~f~DD~~GTa~v~lA~l~na~~~~~~~~~~~~iv~~GaGaag~~~a~~l~~-----~G~~----~~ 212 (752)
T PRK07232 142 FYIEEKLRERMDIPVFHDDQHGTAIISAAALLNALELVGKKIEDVKIVVSGAGAAAIACLNLLVA-----LGAK----KE 212 (752)
T ss_pred HHHHHHHHHhcCCCeeccccchHHHHHHHHHHHHHHHhCCChhhcEEEEECccHHHHHHHHHHHH-----cCCC----cc
Confidence 9999999985 79999999999999999999999999999999999999999999999999986 3987 68
Q ss_pred eEEEEcccCcccCCcccCCchhchhhhcccCCCCCHHHHHhccCCcEEEeecCCCCCCCHHHHHHHHcCCCCcEEEecCC
Q 007802 366 KIWLVDSKGLIVSSRKESLQHFKKPWAHEHAPIKSLLDAVKAIKPTMLMGTSGVGKTFTKEVVEAMASFNEKPVIFALSN 445 (589)
Q Consensus 366 ~i~~vD~~GLv~~~r~~~l~~~k~~fa~~~~~~~~L~e~V~~vkPtvLIG~S~~~g~Fteevv~~Ma~~~erPIIFaLSN 445 (589)
|||+||++|||+++|.++|+++|++||++ .+..+|+|+|+. ||||||+|+ +|+||+|+|++|+ +|||||||||
T Consensus 213 ~i~~~D~~G~i~~~r~~~~~~~k~~~a~~-~~~~~l~~~i~~--~~v~iG~s~-~g~~~~~~v~~M~---~~piifalsN 285 (752)
T PRK07232 213 NIIVCDSKGVIYKGRTEGMDEWKAAYAVD-TDARTLAEAIEG--ADVFLGLSA-AGVLTPEMVKSMA---DNPIIFALAN 285 (752)
T ss_pred cEEEEcCCCeecCCCcccccHHHHHHhcc-CCCCCHHHHHcC--CCEEEEcCC-CCCCCHHHHHHhc---cCCEEEecCC
Confidence 99999999999999965699999999998 555799999998 999999999 8999999999998 6999999999
Q ss_pred CCCCCCCCHHHHhccccCcEEEeeCCCCCcceeCCeeeCCCCccccccchhhhHHHHHhCCcccCHHHHHHHHHHHHhcc
Q 007802 446 PTSQSECTAEEAYTWSKGQAIFASGSPFDPVEYNGKVFVPGQGNNAYIFPGLGLGLIISGAIRVRDEMLLAASEALAAQV 525 (589)
Q Consensus 446 Pt~~~E~t~eda~~wT~GraifAsGSPf~pv~~~G~~~~p~Q~NN~~iFPGiglG~~~~~a~~Itd~m~~aAA~aLA~~v 525 (589)
|| +||+||||++||+| +||||| |+++|||+||+|+|||||+|+++++|++|||+|+++||++||+++
T Consensus 286 P~--~E~~p~~a~~~~~~-~i~atG----------rs~~pnQ~NN~~~FPgi~~g~l~~~a~~i~~~m~~aaa~ala~~~ 352 (752)
T PRK07232 286 PD--PEITPEEAKAVRPD-AIIATG----------RSDYPNQVNNVLCFPYIFRGALDVGATTINEEMKLAAVRAIAELA 352 (752)
T ss_pred CC--ccCCHHHHHHhcCC-EEEEEC----------CcCCCCcccceeecchhhHHHHHcCCccCCHHHHHHHHHHHHhhc
Confidence 99 89999999999999 999998 799999999999999999999999999999999999999999999
Q ss_pred Ccc--------------cCCCCCccCCCCCchhhHHHHHHHHHHHHHHcCCCCCCCCchhHHHHHH
Q 007802 526 TQE--------------HFDKGLIYPPFTNIRKISAHIAAKVAAKAYDLGLASRLPRPKDLVSYAE 577 (589)
Q Consensus 526 ~~~--------------~l~~g~l~P~l~~ireVs~~VA~aVa~~A~~~GvA~~~~~p~dl~~~i~ 577 (589)
+++ ++....|+|+.++ ++|+..||.||+++|+++|+|+... +++.+|.+
T Consensus 353 ~~~~~~~~~~~~~~~~~~~~~~~iip~~~~-~~~~~~va~av~~~a~~~g~a~~~~--~~~~~~~~ 415 (752)
T PRK07232 353 REEVSDEVAAAYGGQKLSFGPEYIIPKPFD-PRLIVKIAPAVAKAAMDSGVATRPI--ADMDAYRE 415 (752)
T ss_pred ccccchhhhhhhccccccCCCCccCCCCCC-hhHHHHHHHHHHHHHHhhCcccCCC--CCHHHHHH
Confidence 876 6888999999888 5699999999999999999998532 23444433
No 9
>cd05312 NAD_bind_1_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 1. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists of eukaryotic and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH
Probab=100.00 E-value=1.5e-99 Score=771.64 Aligned_cols=277 Identities=63% Similarity=1.021 Sum_probs=270.1
Q ss_pred CCchHHHHHHHHHHHHHHhCCCCCCceEEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEcccCcccCCcccCC
Q 007802 305 IQGTASVVLAGILSALKLVGGTLADQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLIVSSRKESL 384 (589)
Q Consensus 305 iQGTaaV~lAgll~Alr~~g~~l~d~riv~~GAGsAg~GiA~ll~~~~~~~~G~s~eeA~~~i~~vD~~GLv~~~r~~~l 384 (589)
|||||+|+|||||||+|++|++|+||||||+|||+||+|||+||+.+|++ +|+|+|||+++||++|++|||+++|.+ |
T Consensus 1 IqGTa~V~lAgllnAlk~~g~~l~d~~iv~~GAGsAg~gia~ll~~~~~~-~G~~~eeA~~~i~~vD~~Gll~~~r~~-l 78 (279)
T cd05312 1 IQGTAAVALAGLLAALRITGKPLSDQRILFLGAGSAGIGIADLIVSAMVR-EGLSEEEARKKIWLVDSKGLLTKDRKD-L 78 (279)
T ss_pred CchHHHHHHHHHHHHHHHhCCChhhcEEEEECcCHHHHHHHHHHHHHHHH-cCCChhhccCeEEEEcCCCeEeCCCCc-c
Confidence 89999999999999999999999999999999999999999999999998 599999999999999999999999965 9
Q ss_pred chhchhhhcccC--CCCCHHHHHhccCCcEEEeecCCCCCCCHHHHHHHHcCCCCcEEEecCCCCCCCCCCHHHHhcccc
Q 007802 385 QHFKKPWAHEHA--PIKSLLDAVKAIKPTMLMGTSGVGKTFTKEVVEAMASFNEKPVIFALSNPTSQSECTAEEAYTWSK 462 (589)
Q Consensus 385 ~~~k~~fa~~~~--~~~~L~e~V~~vkPtvLIG~S~~~g~Fteevv~~Ma~~~erPIIFaLSNPt~~~E~t~eda~~wT~ 462 (589)
+++|++||++.. +.++|+|+|+++|||+|||+|+++|+||+|+||+|++||+|||||||||||+++||+|||||+||+
T Consensus 79 ~~~~~~~a~~~~~~~~~~L~e~i~~v~ptvlIG~S~~~g~ft~evv~~Ma~~~~~PIIFaLSNPt~~~E~~pe~a~~~t~ 158 (279)
T cd05312 79 TPFKKPFARKDEEKEGKSLLEVVKAVKPTVLIGLSGVGGAFTEEVVRAMAKSNERPIIFALSNPTSKAECTAEDAYKWTD 158 (279)
T ss_pred hHHHHHHHhhcCcccCCCHHHHHHhcCCCEEEEeCCCCCCCCHHHHHHHHhcCCCCEEEECCCcCCccccCHHHHHHhhc
Confidence 999999999766 668999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcEEEeeCCCCCcceeCCeeeCCCCccccccchhhhHHHHHhCCcccCHHHHHHHHHHHHhccCcccCCCCCccCCCCCc
Q 007802 463 GQAIFASGSPFDPVEYNGKVFVPGQGNNAYIFPGLGLGLIISGAIRVRDEMLLAASEALAAQVTQEHFDKGLIYPPFTNI 542 (589)
Q Consensus 463 GraifAsGSPf~pv~~~G~~~~p~Q~NN~~iFPGiglG~~~~~a~~Itd~m~~aAA~aLA~~v~~~~l~~g~l~P~l~~i 542 (589)
|||||||||||+||+|+||+++||||||+|+|||||||+++++|++|||+||++||++||++++++++..+.|||+++++
T Consensus 159 G~ai~ATGsPf~pv~~~Gr~~~p~Q~NN~~iFPGiglGal~~~a~~itd~m~~aAA~aLA~~~~~~~l~~~~l~P~~~~~ 238 (279)
T cd05312 159 GRALFASGSPFPPVEYNGKTYVPGQGNNAYIFPGIGLGAILSGARHITDEMFLAAAEALASLVTDEELARGRLYPPLSNI 238 (279)
T ss_pred CCEEEEeCCCCCCeeeCCeEecCCCcceeeeccchhhHHHHcCCeeCCHHHHHHHHHHHHHhCCccccCCCeeeCCCccH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHHHHcCCCCCCCCchhHHHHHHhCCccC
Q 007802 543 RKISAHIAAKVAAKAYDLGLASRLPRPKDLVSYAESCMYSP 583 (589)
Q Consensus 543 reVs~~VA~aVa~~A~~~GvA~~~~~p~dl~~~i~~~mw~P 583 (589)
|+||.+||.||+++|+++|+|+..++|+|+++||+++||+|
T Consensus 239 r~vs~~VA~aVa~~A~~~gla~~~~~~~~~~~~i~~~~w~P 279 (279)
T cd05312 239 REISAQIAVAVAKYAYEEGLATRYPPPEDLEEYVKSQMWEP 279 (279)
T ss_pred hHHHHHHHHHHHHHHHHcCCCCCCCCHHHHHHHHHhCccCC
Confidence 99999999999999999999987676789999999999998
No 10
>PF03949 Malic_M: Malic enzyme, NAD binding domain; InterPro: IPR012302 Malic enzymes (malate oxidoreductases) catalyse the oxidative decarboxylation of malate to form pyruvate [], a reaction important in a number of metabolic pathways - e.g. carbon dioxide released from the reaction may be used in sugar production during the Calvin cycle of photosynthesis []. There are 3 forms of the enzyme []: an NAD-dependent form that decarboxylates oxaloacetate; an NAD-dependent form that does not decarboxylate oxalo-acetate; and an NADPH-dependent form []. Other proteins known to be similar to malic enzymes are the Escherichia coli scfA protein; an enzyme from Zea mays (Maize), formerly thought to be cinnamyl-alcohol dehydrogenase []; and the hypothetical Saccharomyces cerevisiae protein YKL029c. Studies on the duck liver malic enzyme reveals that it can be alkylated by bromopyruvate, resulting in the loss of oxidative decarboxylation and the subsequent enhancement of pyruvate reductase activity []. The alkylated form is able to bind NADPH but not L-malate, indicating impaired substrate-or divalent metal ion-binding in the active site []. Sequence analysis has highlighted a cysteine residue as the point of alkylation, suggesting that it may play an important role in the activity of the enzyme [], although it is absent in the sequences from some species. There are three well conserved regions in the enzyme sequences. Two of them seem to be involved in the binding NAD or NADP. The significance of the third one, located in the central part of the enzymes, is not yet known.; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 2DVM_B 1WW8_A 3NV9_A 1PJ2_A 1PJL_B 1GZ3_A 1PJ4_A 1PJ3_C 1EFL_A 1EFK_B ....
Probab=100.00 E-value=4.3e-96 Score=738.20 Aligned_cols=252 Identities=57% Similarity=0.931 Sum_probs=229.7
Q ss_pred CCchHHHHHHHHHHHHHHhCCCCCCceEEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEcccCcccCCcccCC
Q 007802 305 IQGTASVVLAGILSALKLVGGTLADQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLIVSSRKESL 384 (589)
Q Consensus 305 iQGTaaV~lAgll~Alr~~g~~l~d~riv~~GAGsAg~GiA~ll~~~~~~~~G~s~eeA~~~i~~vD~~GLv~~~r~~~l 384 (589)
|||||+|+|||||||+|++|++|+||||||+|||+||+|||+||+++|+++ |+|++||++||||+|++|||+++|. +|
T Consensus 1 iqGTaaV~lAgll~Al~~~g~~l~d~riv~~GAGsAg~gia~ll~~~~~~~-G~~~~eA~~~i~lvD~~Gll~~~r~-~l 78 (255)
T PF03949_consen 1 IQGTAAVVLAGLLNALRVTGKKLSDQRIVFFGAGSAGIGIARLLVAAMVRE-GLSEEEARKRIWLVDSKGLLTDDRE-DL 78 (255)
T ss_dssp CHHHHHHHHHHHHHHHHHHTS-GGG-EEEEEB-SHHHHHHHHHHHHHHHCT-TS-HHHHHTTEEEEETTEEEBTTTS-SH
T ss_pred CchhHHHHHHHHHHHHHHhCCCHHHcEEEEeCCChhHHHHHHHHHHHHHHh-cCCHHHHhccEEEEeccceEeccCc-cC
Confidence 799999999999999999999999999999999999999999999999985 9999999999999999999999995 59
Q ss_pred chhchhhhcccCCC---CCHHHHHhccCCcEEEeecCCCCCCCHHHHHHHHcCCCCcEEEecCCCCCCCCCCHHHHhccc
Q 007802 385 QHFKKPWAHEHAPI---KSLLDAVKAIKPTMLMGTSGVGKTFTKEVVEAMASFNEKPVIFALSNPTSQSECTAEEAYTWS 461 (589)
Q Consensus 385 ~~~k~~fa~~~~~~---~~L~e~V~~vkPtvLIG~S~~~g~Fteevv~~Ma~~~erPIIFaLSNPt~~~E~t~eda~~wT 461 (589)
+++|++|||+..+. .+|+|+|+++|||||||+|+++|+||||+||+|+++|||||||||||||+++||||||||+||
T Consensus 79 ~~~~~~~a~~~~~~~~~~~L~eav~~~kPtvLIG~S~~~g~ft~evv~~Ma~~~erPIIF~LSNPt~~aE~~peda~~~t 158 (255)
T PF03949_consen 79 NPHKKPFARKTNPEKDWGSLLEAVKGAKPTVLIGLSGQGGAFTEEVVRAMAKHNERPIIFPLSNPTPKAECTPEDAYEWT 158 (255)
T ss_dssp SHHHHHHHBSSSTTT--SSHHHHHHCH--SEEEECSSSTTSS-HHHHHHCHHHSSSEEEEE-SSSCGGSSS-HHHHHHTT
T ss_pred ChhhhhhhccCcccccccCHHHHHHhcCCCEEEEecCCCCcCCHHHHHHHhccCCCCEEEECCCCCCcccCCHHHHHhhC
Confidence 99999999987665 499999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCcEEEeeCCCCCcceeCCeeeCCCCccccccchhhhHHHHHhCCcccCHHHHHHHHHHHHhccCcccCCCCCccCCCCC
Q 007802 462 KGQAIFASGSPFDPVEYNGKVFVPGQGNNAYIFPGLGLGLIISGAIRVRDEMLLAASEALAAQVTQEHFDKGLIYPPFTN 541 (589)
Q Consensus 462 ~GraifAsGSPf~pv~~~G~~~~p~Q~NN~~iFPGiglG~~~~~a~~Itd~m~~aAA~aLA~~v~~~~l~~g~l~P~l~~ 541 (589)
+|+|||||||||+||+|+||+++||||||+|||||||||+++++|++|||+||++||++||++++++++..+.|||++++
T Consensus 159 ~g~ai~AtGSpf~pv~~~Gr~~~p~Q~NN~~iFPGiglG~l~~~a~~Itd~M~~aAA~aLA~~v~~~~~~~~~l~P~~~~ 238 (255)
T PF03949_consen 159 DGRAIFATGSPFPPVEYNGRSDYPNQCNNSYIFPGIGLGALDSRARRITDEMFLAAAEALADLVSEEELAPGRLYPPLFD 238 (255)
T ss_dssp TSEEEEEESS----EEETSCEESSCE-SGGGTHHHHHHHHHHCTBSS--HHHHHHHHHHHHHTSSHHHHHTTBSS-SGGG
T ss_pred CceEEEecCCccCCeeeCCeEEecCCCCeeEeeccceeeeeecCCeecCHHHHHHHHHHHHHhCCcccCCCCcccCCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhHHHHHHHHHHHHH
Q 007802 542 IRKISAHIAAKVAAKAY 558 (589)
Q Consensus 542 ireVs~~VA~aVa~~A~ 558 (589)
+|+||.+||.||+++||
T Consensus 239 ir~vs~~VA~aVa~~Ai 255 (255)
T PF03949_consen 239 IREVSARVAAAVAKQAI 255 (255)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHhC
Confidence 99999999999999996
No 11
>cd00762 NAD_bind_malic_enz NAD(P) binding domain of malic enzyme. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glut
Probab=100.00 E-value=2.7e-93 Score=717.18 Aligned_cols=251 Identities=52% Similarity=0.796 Sum_probs=245.3
Q ss_pred CCchHHHHHHHHHHHHHHhCCCCCCceEEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEcccCcccCCcccCC
Q 007802 305 IQGTASVVLAGILSALKLVGGTLADQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLIVSSRKESL 384 (589)
Q Consensus 305 iQGTaaV~lAgll~Alr~~g~~l~d~riv~~GAGsAg~GiA~ll~~~~~~~~G~s~eeA~~~i~~vD~~GLv~~~r~~~l 384 (589)
|||||+|+|||||||+|++|++|+||||||+|||+||+|||+||+++|++ +|+|+|||++|||++|++|||+++|.+ |
T Consensus 1 iqGTaaV~lAgllnAlk~~g~~l~d~riv~~GAGsAg~gia~ll~~~~~~-~Gls~e~A~~~i~~vD~~Gll~~~r~~-l 78 (254)
T cd00762 1 IQGTASVAVAGLLAALKVTKKKISEHKVLFNGAGAAALGIANLIVXLXVK-EGISKEEACKRIWXVDRKGLLVKNRKE-T 78 (254)
T ss_pred CchhHHHHHHHHHHHHHHhCCChhhcEEEEECcCHHHHHHHHHHHHHHHh-cCCCHHHHhccEEEECCCCeEeCCCCc-c
Confidence 79999999999999999999999999999999999999999999999998 599999999999999999999999965 9
Q ss_pred chhchh---hhcccCCCCCHHHHHhccCCcEEEeecCCCCCCCHHHHHHHHcCCCCcEEEecCCCCCCCCCCHHHHhccc
Q 007802 385 QHFKKP---WAHEHAPIKSLLDAVKAIKPTMLMGTSGVGKTFTKEVVEAMASFNEKPVIFALSNPTSQSECTAEEAYTWS 461 (589)
Q Consensus 385 ~~~k~~---fa~~~~~~~~L~e~V~~vkPtvLIG~S~~~g~Fteevv~~Ma~~~erPIIFaLSNPt~~~E~t~eda~~wT 461 (589)
.++|++ |+++..+.++|+|+|+++|||||||+|+++|+||||+||+|+++|+|||||||||||+++||||||||+||
T Consensus 79 ~~~~~~~~~~~~~~~~~~~L~eav~~~kptvlIG~S~~~g~ft~evv~~Ma~~~~~PIIFaLSNPt~~aE~tpe~a~~~t 158 (254)
T cd00762 79 CPNEYHLARFANPERESGDLEDAVEAAKPDFLIGVSRVGGAFTPEVIRAXAEINERPVIFALSNPTSKAECTAEEAYTAT 158 (254)
T ss_pred CHHHHHHHHHcCcccccCCHHHHHHhhCCCEEEEeCCCCCCCCHHHHHHHhhcCCCCEEEECCCcCCccccCHHHHHhhc
Confidence 999999 88887777899999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCcEEEeeCCCCCcceeCCeeeCCCCccccccchhhhHHHHHhCCcccCHHHHHHHHHHHHhccCcccCCCCCccCCCCC
Q 007802 462 KGQAIFASGSPFDPVEYNGKVFVPGQGNNAYIFPGLGLGLIISGAIRVRDEMLLAASEALAAQVTQEHFDKGLIYPPFTN 541 (589)
Q Consensus 462 ~GraifAsGSPf~pv~~~G~~~~p~Q~NN~~iFPGiglG~~~~~a~~Itd~m~~aAA~aLA~~v~~~~l~~g~l~P~l~~ 541 (589)
+|||||||||||+||+|+|++|+|+||||+|||||||||+++++|++|||+||++||++||+++++++++++.|||++++
T Consensus 159 ~G~ai~AtGspf~pv~~~g~~~~~~Q~NN~~iFPGiglGal~~~a~~itd~m~~aAA~aLA~~v~~~~l~~~~i~P~~~~ 238 (254)
T cd00762 159 EGRAIFASGSPFHPVELNGGTYKPGQGNNLYIFPGVALGVILCRIRHITDDVFLSAAEAIASSVTEESLKPGRLYPPLFD 238 (254)
T ss_pred CCCEEEEECCCCCCcccCCceeecccccceeeccchhhhhHhhcCeECCHHHHHHHHHHHHhhCChhcCCCCceeCCcch
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhHHHHHHHHHHHH
Q 007802 542 IRKISAHIAAKVAAKA 557 (589)
Q Consensus 542 ireVs~~VA~aVa~~A 557 (589)
||+||.+||.+|+++|
T Consensus 239 ir~vs~~VA~aVa~~a 254 (254)
T cd00762 239 IQEVSLNIAVAVAKYA 254 (254)
T ss_pred hhhHHHHHHHHHHHhC
Confidence 9999999999999875
No 12
>PF00390 malic: Malic enzyme, N-terminal domain; InterPro: IPR012301 Malic enzymes (malate oxidoreductases) catalyse the oxidative decarboxylation of malate to form pyruvate [], a reaction important in a number of metabolic pathways - e.g. carbon dioxide released from the reaction may be used in sugar production during the Calvin cycle of photosynthesis []. There are 3 forms of the enzyme []: an NAD-dependent form that decarboxylates oxaloacetate; an NAD-dependent form that does not decarboxylate oxalo-acetate; and an NADPH-dependent form []. Other proteins known to be similar to malic enzymes are the Escherichia coli scfA protein; an enzyme from Zea mays (Maize), formerly thought to be cinnamyl-alcohol dehydrogenase []; and the hypothetical Saccharomyces cerevisiae protein YKL029c. Studies on the duck liver malic enzyme reveals that it can be alkylated by bromopyruvate, resulting in the loss of oxidative decarboxylation and the subsequent enhancement of pyruvate reductase activity []. The alkylated form is able to bind NADPH but not L-malate, indicating impaired substrate-or divalent metal ion-binding in the active site []. Sequence analysis has highlighted a cysteine residue as the point of alkylation, suggesting that it may play an important role in the activity of the enzyme [], although it is absent in the sequences from some species. There are three well conserved regions in the enzyme sequences. Two of them seem to be involved in the binding NAD or NADP. The significance of the third one, located in the central part of the enzymes, is not yet known.; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0055114 oxidation-reduction process; PDB: 2DVM_B 1WW8_A 2HAE_B 1VL6_A 1PJ2_A 1PJL_B 1GZ3_A 1PJ4_A 1PJ3_C 1EFL_A ....
Probab=100.00 E-value=1.5e-83 Score=617.92 Aligned_cols=182 Identities=65% Similarity=1.211 Sum_probs=164.3
Q ss_pred hhhhhhhhHHHhhhcccccCCcccchhhHHHHHHHhhhhcCCCcccccccccccHHHHHhcCCCCCeeEEEEecCccccc
Q 007802 114 QERNERLFYKLLIDNVEELLPVVYTPTVGEACQKYGSIFRRPQGLYISLKEKGKILEVLKNWPERNIQVIVVTDGERILG 193 (589)
Q Consensus 114 ~~~Ne~LFy~ll~~~~~e~lpivYTPtVg~ac~~~s~i~r~p~Glyls~~d~g~i~~il~nwp~~~v~iiVVTDG~rILG 193 (589)
|++||+|||+++.+|++|+||||||||||+||++||++|++|+|+|+|++|+|+|+++|+|||.++||+|||||||||||
T Consensus 1 q~~n~~Lfy~~l~~~~~e~lpivYTPtVg~ac~~~s~~~~~~~Gly~s~~d~g~i~~~l~n~~~~~v~v~VVTDG~rILG 80 (182)
T PF00390_consen 1 QDRNETLFYRLLSSHLEEMLPIVYTPTVGEACQNYSHLFRRPRGLYLSISDRGHIEEILRNWPERDVRVIVVTDGERILG 80 (182)
T ss_dssp HTTEHHHHHHHHHHTHHHHHHHHSTTCHHHHHHHHHHHGGCHHSCCCEGGGETCHHHHHTTSS-SS--EEEEE-SSSBTT
T ss_pred CCccEEEEEeehhhChHhhCceecCchHHHHHHHHHHhhccccceEEecCChHHHHHHHHhhhccCceEEEEeCchhhcc
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCcccchhhhHHHHhhhcCCCCCCeeeEEeecCCCccccccCcccccccccCCChhhHHHHHHHHHHHHHHhcCC
Q 007802 194 LGDLGCQGMGIPVGKLSLYTALGGLRPSACLPITIDVGTNNEQLLNDEFYIGLRQKRATGQEYAELLQEFMTAVKQNYGE 273 (589)
Q Consensus 194 LGDlG~~GmgI~iGKl~LY~a~gGI~P~~~lPI~LDvGTnn~~LL~Dp~YlG~r~~R~~g~~y~~fidefv~av~~~fGp 273 (589)
|||+|++|||||+||++|||+||||||++||||||||||||++||+||+|+|+||+|++|++|++||||||+||+++|||
T Consensus 81 lGD~G~~Gm~I~~GKl~ly~~~gGI~P~~~lPv~LDvGTnn~~ll~Dp~Y~G~r~~R~~g~~y~~fvdefv~av~~~~gp 160 (182)
T PF00390_consen 81 LGDLGVNGMGIPIGKLALYTACGGIDPSRCLPVCLDVGTNNEELLNDPLYLGLRHPRVRGEEYDEFVDEFVEAVKRRFGP 160 (182)
T ss_dssp TBS-GGGGHHHHHHHHHHHHHHHS-EGGGEEEEEEESBBS-HHHHH-TT--S-SSB---THHHHHHHHHHHHHHHHHHGC
T ss_pred ccCcCcceEEeeehhhhhHHhhcCcCcccccCeEeecCcchhhhccCcchhccccCCCChhhhhhCHHHHHHHHHHHhCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceeeEeecCCCccHHHHHHHHc
Q 007802 274 KVLIQFEDFANHNAFELLSKYS 295 (589)
Q Consensus 274 ~~lIq~EDf~~~~Af~iL~ryr 295 (589)
+++||||||+++|||++|+|||
T Consensus 161 ~~~IqfEDf~~~nAf~iL~kYr 182 (182)
T PF00390_consen 161 NALIQFEDFSNPNAFRILDKYR 182 (182)
T ss_dssp TSEEEE-S--CCHHHHHHHHHT
T ss_pred CeEEEEecCCChhHHHHHHhcC
Confidence 9999999999999999999997
No 13
>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph
Probab=100.00 E-value=3.7e-58 Score=456.13 Aligned_cols=223 Identities=37% Similarity=0.516 Sum_probs=207.6
Q ss_pred CCchHHHHHHHHHHHHHHhCCCCCCceEEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEcccCcccCCcccCC
Q 007802 305 IQGTASVVLAGILSALKLVGGTLADQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLIVSSRKESL 384 (589)
Q Consensus 305 iQGTaaV~lAgll~Alr~~g~~l~d~riv~~GAGsAg~GiA~ll~~~~~~~~G~s~eeA~~~i~~vD~~GLv~~~r~~~l 384 (589)
+||||+|++||+++|++..|.+++|+||||+|||+||.|||++|.. .|++ +++||++|++||++.+|.++|
T Consensus 1 ~qgt~~v~lAG~~~al~~~g~~l~~~rvlvlGAGgAg~aiA~~L~~-----~G~~----~~~i~ivdr~gl~~~~r~~~L 71 (226)
T cd05311 1 QHGTAIVTLAGLLNALKLVGKKIEEVKIVINGAGAAGIAIARLLLA-----AGAK----PENIVVVDSKGVIYEGREDDL 71 (226)
T ss_pred CCchHHHHHHHHHHHHHHhCCCccCCEEEEECchHHHHHHHHHHHH-----cCcC----cceEEEEeCCCccccccchhh
Confidence 7999999999999999999999999999999999999999999965 3886 679999999999999987669
Q ss_pred chhchhhhccc--CCC-CCHHHHHhccCCcEEEeecCCCCCCCHHHHHHHHcCCCCcEEEecCCCCCCCCCCHHHHhccc
Q 007802 385 QHFKKPWAHEH--API-KSLLDAVKAIKPTMLMGTSGVGKTFTKEVVEAMASFNEKPVIFALSNPTSQSECTAEEAYTWS 461 (589)
Q Consensus 385 ~~~k~~fa~~~--~~~-~~L~e~V~~vkPtvLIG~S~~~g~Fteevv~~Ma~~~erPIIFaLSNPt~~~E~t~eda~~wT 461 (589)
.++|++|+++. ... .+|.|++++ ||+|||+|+ +|+||+++++.|+ ++||||+||||+ +||++++|++|
T Consensus 72 ~~~~~~la~~~~~~~~~~~l~~~l~~--~dvlIgaT~-~G~~~~~~l~~m~---~~~ivf~lsnP~--~e~~~~~A~~~- 142 (226)
T cd05311 72 NPDKNEIAKETNPEKTGGTLKEALKG--ADVFIGVSR-PGVVKKEMIKKMA---KDPIVFALANPV--PEIWPEEAKEA- 142 (226)
T ss_pred hHHHHHHHHHhccCcccCCHHHHHhc--CCEEEeCCC-CCCCCHHHHHhhC---CCCEEEEeCCCC--CcCCHHHHHHc-
Confidence 99999999864 223 479899986 999999999 8899999999997 899999999999 89999999999
Q ss_pred cCcEEEeeCCCCCcceeCCeeeCCCCccccccchhhhHHHHHhCCcccCHHHHHHHHHHHHhccCcccCCCCCccCCCCC
Q 007802 462 KGQAIFASGSPFDPVEYNGKVFVPGQGNNAYIFPGLGLGLIISGAIRVRDEMLLAASEALAAQVTQEHFDKGLIYPPFTN 541 (589)
Q Consensus 462 ~GraifAsGSPf~pv~~~G~~~~p~Q~NN~~iFPGiglG~~~~~a~~Itd~m~~aAA~aLA~~v~~~~l~~g~l~P~l~~ 541 (589)
|..||+|| +++.|+||||+|||||||||++++++++|||+||++||++||++++++++..+.|||++++
T Consensus 143 -ga~i~a~G----------~~~~~~Q~nn~~~fPg~~~g~~~~~~~~i~~~m~~~aa~~la~~~~~~~~~~~~~~P~~~~ 211 (226)
T cd05311 143 -GADIVATG----------RSDFPNQVNNVLGFPGIFRGALDVRATKITEEMKLAAAEAIADLAEEEVLGEEYIIPTPFD 211 (226)
T ss_pred -CCcEEEeC----------CCCCccccceeeecchhhHHHHHcCCcCCCHHHHHHHHHHHHhhCCccccCCCcccCCCCc
Confidence 55599999 6899999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhHHHHHHHHHHHH
Q 007802 542 IRKISAHIAAKVAAKA 557 (589)
Q Consensus 542 ireVs~~VA~aVa~~A 557 (589)
|+||.+||.+|+++|
T Consensus 212 -~~~~~~va~~v~~~a 226 (226)
T cd05311 212 -PRVVPRVATAVAKAA 226 (226)
T ss_pred -hhHHHHHHHHHHHhC
Confidence 999999999999875
No 14
>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins. Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al
Probab=98.86 E-value=3e-08 Score=84.66 Aligned_cols=86 Identities=37% Similarity=0.486 Sum_probs=76.1
Q ss_pred chHHHHHHHHHHHHHHhCCCCCCceEEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEcccCcccCCcccCCch
Q 007802 307 GTASVVLAGILSALKLVGGTLADQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLIVSSRKESLQH 386 (589)
Q Consensus 307 GTaaV~lAgll~Alr~~g~~l~d~riv~~GAGsAg~GiA~ll~~~~~~~~G~s~eeA~~~i~~vD~~GLv~~~r~~~l~~ 386 (589)
+||.++++++..+.+..+.++++.+++|+|+|.+|.+++..+.+. | -++++++|+
T Consensus 1 ~t~~~~~~~l~~~~~~~~~~~~~~~v~i~G~G~~g~~~a~~l~~~-----~------~~~v~v~~r-------------- 55 (86)
T cd05191 1 ATAAGAVALLKAAGKVTNKSLKGKTVVVLGAGEVGKGIAKLLADE-----G------GKKVVLCDR-------------- 55 (86)
T ss_pred ChhHHHHHHHHHHHHHhCCCCCCCEEEEECCCHHHHHHHHHHHHc-----C------CCEEEEEcC--------------
Confidence 699999999999999999999999999999999999999988663 3 257999888
Q ss_pred hchhhhcccCCCCCHHHHHhccCCcEEEeecCCCCCCCHHHHHHHHcCCCCcEEEecC
Q 007802 387 FKKPWAHEHAPIKSLLDAVKAIKPTMLMGTSGVGKTFTKEVVEAMASFNEKPVIFALS 444 (589)
Q Consensus 387 ~k~~fa~~~~~~~~L~e~V~~vkPtvLIG~S~~~g~Fteevv~~Ma~~~erPIIFaLS 444 (589)
|+||++++.++.|.++ .|+..++.|+||.++
T Consensus 56 ------------------------di~i~~~~~~~~~~~~---~~~~~~~~~~v~~~a 86 (86)
T cd05191 56 ------------------------DILVTATPAGVPVLEE---ATAKINEGAVVIDLA 86 (86)
T ss_pred ------------------------CEEEEcCCCCCCchHH---HHHhcCCCCEEEecC
Confidence 9999999999999988 555557899999875
No 15
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=97.61 E-value=0.0072 Score=66.55 Aligned_cols=158 Identities=18% Similarity=0.257 Sum_probs=104.7
Q ss_pred CChhhHHHHHHHHHHHHHHhcCCceeeEeecCCCccHHHH---------------------HHHHc-------CCCceec
Q 007802 251 ATGQEYAELLQEFMTAVKQNYGEKVLIQFEDFANHNAFEL---------------------LSKYS-------SSHLVFN 302 (589)
Q Consensus 251 ~~g~~y~~fidefv~av~~~fGp~~lIq~EDf~~~~Af~i---------------------L~ryr-------~~~~~Fn 302 (589)
.+-++|+..+++.+ ..+.|+.+| |.+..-...+ ..||+ ..+|+||
T Consensus 106 ~~~~ey~~~~~~~l----~~~~p~iii---DdGgdl~~~~~~~~~~~~~~i~G~~EeTttGv~rl~~~~~~~~l~~Pv~~ 178 (425)
T PRK05476 106 ETLEEYWECIERAL----DGHGPNMIL---DDGGDLTLLVHTERPELLANIKGVTEETTTGVHRLYAMAKDGALKFPAIN 178 (425)
T ss_pred CCHHHHHHHHHHHh----cCCCCCEEE---ecccHHHHHHHHHhhHhHhccEeeeecchHHHHHHHHHHHcCCCCCCEEe
Confidence 35678888777766 345576665 5554444433 13443 3799998
Q ss_pred ----------cCCCchHHHHHHHHHHHHHHhCCCCCCceEEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEcc
Q 007802 303 ----------DDIQGTASVVLAGILSALKLVGGTLADQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDS 372 (589)
Q Consensus 303 ----------DDiQGTaaV~lAgll~Alr~~g~~l~d~riv~~GAGsAg~GiA~ll~~~~~~~~G~s~eeA~~~i~~vD~ 372 (589)
|...||+--++-|+.. .++..+.+.+++|+|.|..|.++|..+.. .|. +++++|.
T Consensus 179 vn~s~~K~~~dn~~gt~~s~~~ai~r---at~~~l~Gk~VlViG~G~IG~~vA~~lr~-----~Ga-------~ViV~d~ 243 (425)
T PRK05476 179 VNDSVTKSKFDNRYGTGESLLDGIKR---ATNVLIAGKVVVVAGYGDVGKGCAQRLRG-----LGA-------RVIVTEV 243 (425)
T ss_pred cCCcccCccccccHHHHhhhHHHHHH---hccCCCCCCEEEEECCCHHHHHHHHHHHh-----CCC-------EEEEEcC
Confidence 6678898776666653 44777899999999999999999988854 253 5888886
Q ss_pred cCcccCCcccCCchhchhhhc-ccCCCCCHHHHHhccCCcEEEeecCCCCCCCHHHHHHHHcCCCCcEEEecCCCC
Q 007802 373 KGLIVSSRKESLQHFKKPWAH-EHAPIKSLLDAVKAIKPTMLMGTSGVGKTFTKEVVEAMASFNEKPVIFALSNPT 447 (589)
Q Consensus 373 ~GLv~~~r~~~l~~~k~~fa~-~~~~~~~L~e~V~~vkPtvLIG~S~~~g~Fteevv~~Ma~~~erPIIFaLSNPt 447 (589)
+- .| ...|. ..-...++.++++. .|++|-+++..++|+.+.++.|. +.-|++-.+.+.
T Consensus 244 dp----~r--------a~~A~~~G~~v~~l~eal~~--aDVVI~aTG~~~vI~~~~~~~mK---~GailiNvG~~d 302 (425)
T PRK05476 244 DP----IC--------ALQAAMDGFRVMTMEEAAEL--GDIFVTATGNKDVITAEHMEAMK---DGAILANIGHFD 302 (425)
T ss_pred Cc----hh--------hHHHHhcCCEecCHHHHHhC--CCEEEECCCCHHHHHHHHHhcCC---CCCEEEEcCCCC
Confidence 41 11 11111 11123468888874 89999988877788888888885 334665555544
No 16
>TIGR01035 hemA glutamyl-tRNA reductase. This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA.
Probab=97.17 E-value=0.0017 Score=70.79 Aligned_cols=121 Identities=22% Similarity=0.352 Sum_probs=82.0
Q ss_pred CchHHHHHHHHHHHHHHhCCCCCCceEEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEcccCcccCCcccCCc
Q 007802 306 QGTASVVLAGILSALKLVGGTLADQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLIVSSRKESLQ 385 (589)
Q Consensus 306 QGTaaV~lAgll~Alr~~g~~l~d~riv~~GAGsAg~GiA~ll~~~~~~~~G~s~eeA~~~i~~vD~~GLv~~~r~~~l~ 385 (589)
.+.-+|+.+++--|.+..| ++.+.+++|+|+|..|..++..+.. .|. .+|+++|+.. ++ ..
T Consensus 158 ~~~vSv~~~Av~la~~~~~-~l~~~~VlViGaG~iG~~~a~~L~~-----~G~------~~V~v~~rs~----~r---a~ 218 (417)
T TIGR01035 158 AGAVSISSAAVELAERIFG-SLKGKKALLIGAGEMGELVAKHLLR-----KGV------GKILIANRTY----ER---AE 218 (417)
T ss_pred CCCcCHHHHHHHHHHHHhC-CccCCEEEEECChHHHHHHHHHHHH-----CCC------CEEEEEeCCH----HH---HH
Confidence 5566777777766666655 4889999999999999999888754 264 5788888741 11 11
Q ss_pred hhchhhhcccCCCCCHHHHHhccCCcEEEeecCCC-CCCCHHHHHHHHcCCCCc-EEEecCCCC
Q 007802 386 HFKKPWAHEHAPIKSLLDAVKAIKPTMLMGTSGVG-KTFTKEVVEAMASFNEKP-VIFALSNPT 447 (589)
Q Consensus 386 ~~k~~fa~~~~~~~~L~e~V~~vkPtvLIG~S~~~-g~Fteevv~~Ma~~~erP-IIFaLSNPt 447 (589)
...+.+....-...++.+++.. .|++|-+++.+ ..++++.++.+.....+| +|+-|++|-
T Consensus 219 ~la~~~g~~~i~~~~l~~~l~~--aDvVi~aT~s~~~ii~~e~l~~~~~~~~~~~~viDla~Pr 280 (417)
T TIGR01035 219 DLAKELGGEAVKFEDLEEYLAE--ADIVISSTGAPHPIVSKEDVERALRERTRPLFIIDIAVPR 280 (417)
T ss_pred HHHHHcCCeEeeHHHHHHHHhh--CCEEEECCCCCCceEcHHHHHHHHhcCCCCeEEEEeCCCC
Confidence 1111111111112467788875 89999987544 478999999875433356 889999997
No 17
>PRK09414 glutamate dehydrogenase; Provisional
Probab=97.13 E-value=0.019 Score=63.72 Aligned_cols=189 Identities=18% Similarity=0.184 Sum_probs=130.5
Q ss_pred CChhhHHHHHHHHHHHHHHhcCCceeeEeecCCCccHHH--HHHHHcCC---C-ce-------e---ccCCCchHHHHHH
Q 007802 251 ATGQEYAELLQEFMTAVKQNYGEKVLIQFEDFANHNAFE--LLSKYSSS---H-LV-------F---NDDIQGTASVVLA 314 (589)
Q Consensus 251 ~~g~~y~~fidefv~av~~~fGp~~lIq~EDf~~~~Af~--iL~ryr~~---~-~~-------F---nDDiQGTaaV~lA 314 (589)
.+..|-..|...|+.++.+.+||..=|-=+|++..-.-. +.+.|+.- . .+ + .+--..||-=+..
T Consensus 138 ~s~~Eler~~r~~~~~l~~~iG~~~DipapDvgt~~~~M~~~~d~y~~~~~~~~g~vtGkp~~~gGs~gr~~aTg~Gv~~ 217 (445)
T PRK09414 138 KSDAEIMRFCQSFMTELYRHIGPDTDVPAGDIGVGGREIGYLFGQYKRLTNRFEGVLTGKGLSFGGSLIRTEATGYGLVY 217 (445)
T ss_pred CCHHHHHHHHHHHHHHHHHhcCCCCCcCccccCCCHHHHHHHHHHHHhhcCcceEEEecCCcccCCCCCCCCcccHHHHH
Confidence 455688889999999999999998888888887433222 66777631 1 11 1 1234467777788
Q ss_pred HHHHHHHHhCCCCCCceEEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEE-cccCcccCCcccCCchh-----c
Q 007802 315 GILSALKLVGGTLADQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLV-DSKGLIVSSRKESLQHF-----K 388 (589)
Q Consensus 315 gll~Alr~~g~~l~d~riv~~GAGsAg~GiA~ll~~~~~~~~G~s~eeA~~~i~~v-D~~GLv~~~r~~~l~~~-----k 388 (589)
++..+++..+.+|++.||+|.|-|..|...|++|.. .|. +|+-+ |++|-|+... .|+.. +
T Consensus 218 ~~~~~~~~~~~~l~g~rVaIqGfGnVG~~~A~~L~~-----~Ga-------kVVavsDs~G~iyn~~--GLD~~~L~~~k 283 (445)
T PRK09414 218 FAEEMLKARGDSFEGKRVVVSGSGNVAIYAIEKAQQ-----LGA-------KVVTCSDSSGYVYDEE--GIDLEKLKEIK 283 (445)
T ss_pred HHHHHHHhcCCCcCCCEEEEECCCHHHHHHHHHHHH-----CCC-------EEEEEEcCCceEECCC--CCCHHHHHHHH
Confidence 888889989999999999999999999999999854 363 45555 9999999875 34332 1
Q ss_pred h-------hhhcc-cCCCCCHHHHHhccCCcEEEeecCCCCCCCHHHHHHHHcCCCCcEEEecCC-CCCCCCCCHHHHhc
Q 007802 389 K-------PWAHE-HAPIKSLLDAVKAIKPTMLMGTSGVGKTFTKEVVEAMASFNEKPVIFALSN-PTSQSECTAEEAYT 459 (589)
Q Consensus 389 ~-------~fa~~-~~~~~~L~e~V~~vkPtvLIG~S~~~g~Fteevv~~Ma~~~erPIIFaLSN-Pt~~~E~t~eda~~ 459 (589)
. .|... ....-+- +.+-.++.||||=+.. .+..|++-...+-. +.-.||.=-+| |+ -+| +++++.
T Consensus 284 ~~~~~~l~~~~~~~~~~~i~~-~~i~~~d~DVliPaAl-~n~It~~~a~~i~~-~~akiIvEgAN~p~-t~~--A~~~L~ 357 (445)
T PRK09414 284 EVRRGRISEYAEEFGAEYLEG-GSPWSVPCDIALPCAT-QNELDEEDAKTLIA-NGVKAVAEGANMPS-TPE--AIEVFL 357 (445)
T ss_pred HhcCCchhhhhhhcCCeecCC-ccccccCCcEEEecCC-cCcCCHHHHHHHHH-cCCeEEEcCCCCCC-CHH--HHHHHH
Confidence 1 11110 0001112 2234568999996665 77999999998843 45689999998 76 244 445554
No 18
>PLN02477 glutamate dehydrogenase
Probab=97.03 E-value=0.016 Score=63.53 Aligned_cols=186 Identities=23% Similarity=0.252 Sum_probs=128.2
Q ss_pred CChhhHHHHHHHHHHHHHHhcCCceeeEeecCCCccHHH--HHHHHcC----CCcee----------ccCCCchHHHHHH
Q 007802 251 ATGQEYAELLQEFMTAVKQNYGEKVLIQFEDFANHNAFE--LLSKYSS----SHLVF----------NDDIQGTASVVLA 314 (589)
Q Consensus 251 ~~g~~y~~fidefv~av~~~fGp~~lIq~EDf~~~~Af~--iL~ryr~----~~~~F----------nDDiQGTaaV~lA 314 (589)
.+..|-..|...|+.++.+.-||..=|-=+|.+..-.-. +.++|+. .-.|+ .+--.-||-=+..
T Consensus 112 ~s~~e~e~l~r~f~~~l~~~iG~~~DipapDvgt~~~~M~w~~d~y~~~~g~~~~~vtGkp~~~gGs~~r~~aTg~Gv~~ 191 (410)
T PLN02477 112 LSESELERLTRVFTQKIHDLIGIHTDVPAPDMGTNAQTMAWILDEYSKFHGFSPAVVTGKPIDLGGSLGREAATGRGVVF 191 (410)
T ss_pred CCHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCHHHHHHHHHHHHHhhCCCCceEeCCCcccCCCCCCCccchHHHHH
Confidence 456778889999999999999986556667876643221 5677753 11111 2233458877888
Q ss_pred HHHHHHHHhCCCCCCceEEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeEE-EEcccCcccCCcccCCchhch-hhh
Q 007802 315 GILSALKLVGGTLADQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIW-LVDSKGLIVSSRKESLQHFKK-PWA 392 (589)
Q Consensus 315 gll~Alr~~g~~l~d~riv~~GAGsAg~GiA~ll~~~~~~~~G~s~eeA~~~i~-~vD~~GLv~~~r~~~l~~~k~-~fa 392 (589)
++-.+++..|.+|++.||+|.|.|..|.+.|++|.+ .|. +|. +.|++|-|+... .|+.... .+.
T Consensus 192 ~~~~~~~~~g~~l~g~~VaIqGfGnVG~~~A~~L~e-----~Ga-------kVVaVsD~~G~iy~~~--GLD~~~L~~~k 257 (410)
T PLN02477 192 ATEALLAEHGKSIAGQTFVIQGFGNVGSWAAQLIHE-----KGG-------KIVAVSDITGAVKNEN--GLDIPALRKHV 257 (410)
T ss_pred HHHHHHHHcCCCccCCEEEEECCCHHHHHHHHHHHH-----cCC-------EEEEEECCCCeEECCC--CCCHHHHHHHH
Confidence 888899989999999999999999999999998865 363 455 899999999865 3543221 111
Q ss_pred cccCCC--------CCHHHHHhccCCcEEEeecCCCCCCCHHHHHHHHcCCCCcEEEecCC-CCCCCCCCHHHHhc
Q 007802 393 HEHAPI--------KSLLDAVKAIKPTMLMGTSGVGKTFTKEVVEAMASFNEKPVIFALSN-PTSQSECTAEEAYT 459 (589)
Q Consensus 393 ~~~~~~--------~~L~e~V~~vkPtvLIG~S~~~g~Fteevv~~Ma~~~erPIIFaLSN-Pt~~~E~t~eda~~ 459 (589)
+....+ -+-.+.+. .+.||||=+. .++..|++.+..+ +-.||.--+| |+ -+| +++.++
T Consensus 258 ~~~g~l~~~~~a~~i~~~e~l~-~~~DvliP~A-l~~~I~~~na~~i----~ak~I~egAN~p~-t~e--a~~~L~ 324 (410)
T PLN02477 258 AEGGGLKGFPGGDPIDPDDILV-EPCDVLIPAA-LGGVINKENAADV----KAKFIVEAANHPT-DPE--ADEILR 324 (410)
T ss_pred HhcCchhccccceEecCcccee-ccccEEeecc-ccccCCHhHHHHc----CCcEEEeCCCCCC-CHH--HHHHHH
Confidence 110000 12233343 4899999665 4679999999886 6889999999 66 344 456554
No 19
>cd05211 NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of glutamate dehydrogenase, leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NAD(P)+. This subfamily includes glutamate, leucine, phenylalanine, and valine DHs. Glutamate DH is a multi-domain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. As in other NAD+-dependent DHs, monomers in this family have 2 domains separated by a deep cleft. Here the c-terminal domain contains a modified NAD-binding Rossmann fold with 7 rather than the usual 6 beta strands and one strand anti-parral
Probab=97.01 E-value=0.0081 Score=60.39 Aligned_cols=130 Identities=21% Similarity=0.250 Sum_probs=92.2
Q ss_pred hHHHHHHHHHHHHHHhCCCCCCceEEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEcccCcccCCcccCCchh
Q 007802 308 TASVVLAGILSALKLVGGTLADQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLIVSSRKESLQHF 387 (589)
Q Consensus 308 TaaV~lAgll~Alr~~g~~l~d~riv~~GAGsAg~GiA~ll~~~~~~~~G~s~eeA~~~i~~vD~~GLv~~~r~~~l~~~ 387 (589)
||-=+..++-.+++..+.+|++.||+|.|-|..|.++|++|.+. |. +-+.+.|++|-++.. + |+..
T Consensus 2 Tg~Gv~~~~~~~~~~~~~~l~g~~vaIqGfGnVG~~~a~~L~~~-----G~------~vV~vsD~~g~i~~~-G--ld~~ 67 (217)
T cd05211 2 TGYGVVVAMKAAMKHLGDSLEGLTVAVQGLGNVGWGLAKKLAEE-----GG------KVLAVSDPDGYIYDP-G--ITTE 67 (217)
T ss_pred chhHHHHHHHHHHHHcCCCcCCCEEEEECCCHHHHHHHHHHHHc-----CC------EEEEEEcCCCcEECC-C--CCHH
Confidence 44446667778888899999999999999999999999999763 53 678899999988876 3 4332
Q ss_pred -chhhhcccCCCCCH-------HHHHhccCCcEEEeecCCCCCCCHHHHHHHHcCCCCcEEEecCC-CCCCCCCCHHHHh
Q 007802 388 -KKPWAHEHAPIKSL-------LDAVKAIKPTMLMGTSGVGKTFTKEVVEAMASFNEKPVIFALSN-PTSQSECTAEEAY 458 (589)
Q Consensus 388 -k~~fa~~~~~~~~L-------~e~V~~vkPtvLIG~S~~~g~Fteevv~~Ma~~~erPIIFaLSN-Pt~~~E~t~eda~ 458 (589)
...+.++....... .+.+-.++.|+||=++. .+..|++..+.+ .-++|.--+| |++. .+++.+
T Consensus 68 ~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~DVlipaA~-~~~i~~~~a~~l----~a~~V~e~AN~p~t~---~a~~~L 139 (217)
T cd05211 68 ELINYAVALGGSARVKVQDYFPGEAILGLDVDIFAPCAL-GNVIDLENAKKL----KAKVVAEGANNPTTD---EALRIL 139 (217)
T ss_pred HHHHHHHhhCCccccCcccccCcccceeccccEEeeccc-cCccChhhHhhc----CccEEEeCCCCCCCH---HHHHHH
Confidence 22222211111100 13344568899997776 569999999988 4789998888 8742 456666
Q ss_pred c
Q 007802 459 T 459 (589)
Q Consensus 459 ~ 459 (589)
+
T Consensus 140 ~ 140 (217)
T cd05211 140 H 140 (217)
T ss_pred H
Confidence 5
No 20
>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase. Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,
Probab=96.92 E-value=0.005 Score=64.57 Aligned_cols=137 Identities=20% Similarity=0.331 Sum_probs=86.1
Q ss_pred ccHHHHHHHHcCCCceeccCCCchHHHHHHHHHHHHHHhCCCCCCceEEEeCcChHHHHHHHHHHHHHHhccCCCHHhhc
Q 007802 285 HNAFELLSKYSSSHLVFNDDIQGTASVVLAGILSALKLVGGTLADQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEAR 364 (589)
Q Consensus 285 ~~Af~iL~ryr~~~~~FnDDiQGTaaV~lAgll~Alr~~g~~l~d~riv~~GAGsAg~GiA~ll~~~~~~~~G~s~eeA~ 364 (589)
.+|+++=++.|.+.-+. .|-.+|+.+++-.|....|. +.+.+|+|+|+|..|..+++.+.. .|.
T Consensus 139 ~~a~~~~k~vr~et~i~----~~~~sv~~~Av~~a~~~~~~-l~~~~V~ViGaG~iG~~~a~~L~~-----~g~------ 202 (311)
T cd05213 139 QKAIKVGKRVRTETGIS----RGAVSISSAAVELAEKIFGN-LKGKKVLVIGAGEMGELAAKHLAA-----KGV------ 202 (311)
T ss_pred HHHHHHHHHHhhhcCCC----CCCcCHHHHHHHHHHHHhCC-ccCCEEEEECcHHHHHHHHHHHHH-----cCC------
Confidence 46666666766654444 34456666666666655554 899999999999999998888754 242
Q ss_pred CeEEEEcccCcccCCcccCCchhchhhhcccCCCCCHHHHHhccCCcEEEeecCCCCCCCHHHHHHHHcCC--CCcEEEe
Q 007802 365 KKIWLVDSKGLIVSSRKESLQHFKKPWAHEHAPIKSLLDAVKAIKPTMLMGTSGVGKTFTKEVVEAMASFN--EKPVIFA 442 (589)
Q Consensus 365 ~~i~~vD~~GLv~~~r~~~l~~~k~~fa~~~~~~~~L~e~V~~vkPtvLIG~S~~~g~Fteevv~~Ma~~~--erPIIFa 442 (589)
++|+++|+. .+| .....+.|-.......++.+++.. .|++|-+++.+.. +++++.+.+.. ..-+|+=
T Consensus 203 ~~V~v~~r~----~~r---a~~la~~~g~~~~~~~~~~~~l~~--aDvVi~at~~~~~--~~~~~~~~~~~~~~~~~viD 271 (311)
T cd05213 203 AEITIANRT----YER---AEELAKELGGNAVPLDELLELLNE--ADVVISATGAPHY--AKIVERAMKKRSGKPRLIVD 271 (311)
T ss_pred CEEEEEeCC----HHH---HHHHHHHcCCeEEeHHHHHHHHhc--CCEEEECCCCCch--HHHHHHHHhhCCCCCeEEEE
Confidence 679988874 111 111112221111112357787775 8999999887754 66666654322 2347778
Q ss_pred cCCCCC
Q 007802 443 LSNPTS 448 (589)
Q Consensus 443 LSNPt~ 448 (589)
||||-.
T Consensus 272 lavPrd 277 (311)
T cd05213 272 LAVPRD 277 (311)
T ss_pred eCCCCC
Confidence 999863
No 21
>PRK14031 glutamate dehydrogenase; Provisional
Probab=96.90 E-value=0.035 Score=61.65 Aligned_cols=182 Identities=15% Similarity=0.139 Sum_probs=124.8
Q ss_pred CChhhHHHHHHHHHHHHHHhcCCceeeEeecCCCccHHH--HHHHHcC---C-Ccee----------ccCCCchHHHHHH
Q 007802 251 ATGQEYAELLQEFMTAVKQNYGEKVLIQFEDFANHNAFE--LLSKYSS---S-HLVF----------NDDIQGTASVVLA 314 (589)
Q Consensus 251 ~~g~~y~~fidefv~av~~~fGp~~lIq~EDf~~~~Af~--iL~ryr~---~-~~~F----------nDDiQGTaaV~lA 314 (589)
.+-.|...|.-.|+..+.+.+||..-|--+|++..-.-. +.+.|+. . .-++ .+--+-||-=+.-
T Consensus 134 ~s~~Eler~~r~f~~~L~~~iGp~~dipApDvgt~~~~M~~i~d~y~~~~~~~~g~~tgkp~~~GGs~~r~~aTg~Gv~~ 213 (444)
T PRK14031 134 KSNAEVMRFCQAFMLELWRHIGPETDVPAGDIGVGGREVGFMFGMYKKLSHEFTGTFTGKGREFGGSLIRPEATGYGNIY 213 (444)
T ss_pred CCHHHHHHHHHHHHHHHHhccCCCCccCccccCCCHHHHHHHHHHHHhhcCCcceEECCCccccCCCCCCCcccHHHHHH
Confidence 456778899999999999999999999999997643322 6777753 1 1233 2334568877888
Q ss_pred HHHHHHHHhCCCCCCceEEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEcccCcccCCcccCCchhchhhhcc
Q 007802 315 GILSALKLVGGTLADQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLIVSSRKESLQHFKKPWAHE 394 (589)
Q Consensus 315 gll~Alr~~g~~l~d~riv~~GAGsAg~GiA~ll~~~~~~~~G~s~eeA~~~i~~vD~~GLv~~~r~~~l~~~k~~fa~~ 394 (589)
++-.+++..|.+|+++||+|-|.|..|...|+.|.+. |. +=+-+.|++|-|+... .|+..+..|-.+
T Consensus 214 ~~~~~~~~~g~~l~g~rVaVQGfGNVG~~aA~~L~e~-----GA------kVVaVSD~~G~iy~~~--Gld~~~l~~~~~ 280 (444)
T PRK14031 214 FLMEMLKTKGTDLKGKVCLVSGSGNVAQYTAEKVLEL-----GG------KVVTMSDSDGYIYDPD--GIDREKLDYIME 280 (444)
T ss_pred HHHHHHHhcCCCcCCCEEEEECCCHHHHHHHHHHHHC-----CC------EEEEEECCCCeEECCC--CCCHHHHHHHHH
Confidence 8889999999999999999999999999999988653 63 3455699999988754 465544332211
Q ss_pred cCC--CCCHHH-------------HHhccCCcEEEeecCCCCCCCHHHHHHHHcCCCCcEEEecCC-CC
Q 007802 395 HAP--IKSLLD-------------AVKAIKPTMLMGTSGVGKTFTKEVVEAMASFNEKPVIFALSN-PT 447 (589)
Q Consensus 395 ~~~--~~~L~e-------------~V~~vkPtvLIG~S~~~g~Fteevv~~Ma~~~erPIIFaLSN-Pt 447 (589)
... .+++.+ .+-.++.|+||=+.. .+..|++.++.+... -.-+|.--+| |+
T Consensus 281 ~k~~~~~~v~~~~~~~ga~~i~~d~~~~~~cDIliPaAl-~n~I~~~na~~l~a~-g~~~V~EgAN~P~ 347 (444)
T PRK14031 281 LKNLYRGRIREYAEKYGCKYVEGARPWGEKGDIALPSAT-QNELNGDDARQLVAN-GVIAVSEGANMPS 347 (444)
T ss_pred HHhhcCCchhhhHhhcCCEEcCCcccccCCCcEEeeccc-ccccCHHHHHHHHhc-CCeEEECCCCCCC
Confidence 000 011111 111256788886555 578999999888431 0127777777 54
No 22
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=96.87 E-value=0.015 Score=64.00 Aligned_cols=129 Identities=18% Similarity=0.248 Sum_probs=93.2
Q ss_pred CCceec----------cCCCchHHHHHHHHHHHHHHhCCCCCCceEEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCe
Q 007802 297 SHLVFN----------DDIQGTASVVLAGILSALKLVGGTLADQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKK 366 (589)
Q Consensus 297 ~~~~Fn----------DDiQGTaaV~lAgll~Alr~~g~~l~d~riv~~GAGsAg~GiA~ll~~~~~~~~G~s~eeA~~~ 366 (589)
.+|+|+ |...||+--++-+++. .++..+.+.+++|+|+|..|.++|..+.. .|. +
T Consensus 163 ~~Pv~~vnds~~K~~~dn~~g~g~s~~~~i~r---~t~~~l~GktVvViG~G~IG~~va~~ak~-----~Ga-------~ 227 (413)
T cd00401 163 KFPAINVNDSVTKSKFDNLYGCRESLIDGIKR---ATDVMIAGKVAVVAGYGDVGKGCAQSLRG-----QGA-------R 227 (413)
T ss_pred CCCEEEecchhhcccccccchhchhhHHHHHH---hcCCCCCCCEEEEECCCHHHHHHHHHHHH-----CCC-------E
Confidence 678874 6678999988777764 66778999999999999999999987754 263 4
Q ss_pred EEEEcccCcccCCcccCCchhchhhhccc-CCCCCHHHHHhccCCcEEEeecCCCCCCCHHHHHHHHcCCCCcEEEecCC
Q 007802 367 IWLVDSKGLIVSSRKESLQHFKKPWAHEH-APIKSLLDAVKAIKPTMLMGTSGVGKTFTKEVVEAMASFNEKPVIFALSN 445 (589)
Q Consensus 367 i~~vD~~GLv~~~r~~~l~~~k~~fa~~~-~~~~~L~e~V~~vkPtvLIG~S~~~g~Fteevv~~Ma~~~erPIIFaLSN 445 (589)
++++|.+ +.+..+|+.. -...++.|+++. .|++|-+++.+++|+++.++.|. ..-+|.-.+.
T Consensus 228 ViV~d~d------------~~R~~~A~~~G~~~~~~~e~v~~--aDVVI~atG~~~~i~~~~l~~mk---~GgilvnvG~ 290 (413)
T cd00401 228 VIVTEVD------------PICALQAAMEGYEVMTMEEAVKE--GDIFVTTTGNKDIITGEHFEQMK---DGAIVCNIGH 290 (413)
T ss_pred EEEEECC------------hhhHHHHHhcCCEEccHHHHHcC--CCEEEECCCCHHHHHHHHHhcCC---CCcEEEEeCC
Confidence 7767753 1222333321 112346788864 79999999888889988888885 4557766776
Q ss_pred CCCCCCCCHHHHhc
Q 007802 446 PTSQSECTAEEAYT 459 (589)
Q Consensus 446 Pt~~~E~t~eda~~ 459 (589)
+. .|+.+.+...
T Consensus 291 ~~--~eId~~~L~~ 302 (413)
T cd00401 291 FD--VEIDVKGLKE 302 (413)
T ss_pred CC--CccCHHHHHh
Confidence 63 7888887654
No 23
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=96.80 E-value=0.018 Score=63.17 Aligned_cols=128 Identities=20% Similarity=0.241 Sum_probs=87.9
Q ss_pred CCceec----------cCCCchHHHHHHHHHHHHHHhCCCCCCceEEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCe
Q 007802 297 SHLVFN----------DDIQGTASVVLAGILSALKLVGGTLADQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKK 366 (589)
Q Consensus 297 ~~~~Fn----------DDiQGTaaV~lAgll~Alr~~g~~l~d~riv~~GAGsAg~GiA~ll~~~~~~~~G~s~eeA~~~ 366 (589)
.+|+|+ |.-.||+--++-+++ |.++..+.+.+++|+|.|..|.++|..+.. .|. +
T Consensus 156 ~~Pvi~vnds~~K~~fDn~yg~g~s~~~~i~---r~t~~~l~Gk~VvViG~G~IG~~vA~~ak~-----~Ga-------~ 220 (406)
T TIGR00936 156 KFPAINVNDAYTKSLFDNRYGTGQSTIDGIL---RATNLLIAGKTVVVAGYGWCGKGIAMRARG-----MGA-------R 220 (406)
T ss_pred CCcEEEecchhhchhhhcccccchhHHHHHH---HhcCCCCCcCEEEEECCCHHHHHHHHHHhh-----CcC-------E
Confidence 788886 667899977666654 566778999999999999999999997753 253 4
Q ss_pred EEEEcccCcccCCcccCCchhchhhhc-ccCCCCCHHHHHhccCCcEEEeecCCCCCCCHHHHHHHHcCCCCcEEEecCC
Q 007802 367 IWLVDSKGLIVSSRKESLQHFKKPWAH-EHAPIKSLLDAVKAIKPTMLMGTSGVGKTFTKEVVEAMASFNEKPVIFALSN 445 (589)
Q Consensus 367 i~~vD~~GLv~~~r~~~l~~~k~~fa~-~~~~~~~L~e~V~~vkPtvLIG~S~~~g~Fteevv~~Ma~~~erPIIFaLSN 445 (589)
++++|.+- .| ...|+ +.....++.|+++. .|++|-+.+..++++++.+..|. +.-||.-.+.
T Consensus 221 ViV~d~dp----~r--------~~~A~~~G~~v~~leeal~~--aDVVItaTG~~~vI~~~~~~~mK---~GailiN~G~ 283 (406)
T TIGR00936 221 VIVTEVDP----IR--------ALEAAMDGFRVMTMEEAAKI--GDIFITATGNKDVIRGEHFENMK---DGAIVANIGH 283 (406)
T ss_pred EEEEeCCh----hh--------HHHHHhcCCEeCCHHHHHhc--CCEEEECCCCHHHHHHHHHhcCC---CCcEEEEECC
Confidence 88787641 11 11111 11122357788864 89999888777788888888775 4557776666
Q ss_pred CCCCCCCCHHHHh
Q 007802 446 PTSQSECTAEEAY 458 (589)
Q Consensus 446 Pt~~~E~t~eda~ 458 (589)
.. .|+.-++..
T Consensus 284 ~~--~eId~~aL~ 294 (406)
T TIGR00936 284 FD--VEIDVKALE 294 (406)
T ss_pred CC--ceeCHHHHH
Confidence 64 555555443
No 24
>PRK00045 hemA glutamyl-tRNA reductase; Reviewed
Probab=96.79 E-value=0.0051 Score=67.20 Aligned_cols=120 Identities=23% Similarity=0.377 Sum_probs=78.2
Q ss_pred chHHHHHHHHHHHHHHhCCCCCCceEEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEcccCcccCCcccCCch
Q 007802 307 GTASVVLAGILSALKLVGGTLADQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLIVSSRKESLQH 386 (589)
Q Consensus 307 GTaaV~lAgll~Alr~~g~~l~d~riv~~GAGsAg~GiA~ll~~~~~~~~G~s~eeA~~~i~~vD~~GLv~~~r~~~l~~ 386 (589)
+..+|+.+|+--|.+..+ ++.+.+++|+|+|..|..++..+.. .|. ++|+++|+.. .| ...
T Consensus 161 ~~~Sv~~~Av~~a~~~~~-~~~~~~vlViGaG~iG~~~a~~L~~-----~G~------~~V~v~~r~~----~r---a~~ 221 (423)
T PRK00045 161 GAVSVASAAVELAKQIFG-DLSGKKVLVIGAGEMGELVAKHLAE-----KGV------RKITVANRTL----ER---AEE 221 (423)
T ss_pred CCcCHHHHHHHHHHHhhC-CccCCEEEEECchHHHHHHHHHHHH-----CCC------CeEEEEeCCH----HH---HHH
Confidence 355666666554544444 6889999999999999999887753 264 6789887741 11 111
Q ss_pred hchhhhcccCCCCCHHHHHhccCCcEEEeecCCC-CCCCHHHHHHHHcCC--CCcEEEecCCCC
Q 007802 387 FKKPWAHEHAPIKSLLDAVKAIKPTMLMGTSGVG-KTFTKEVVEAMASFN--EKPVIFALSNPT 447 (589)
Q Consensus 387 ~k~~fa~~~~~~~~L~e~V~~vkPtvLIG~S~~~-g~Fteevv~~Ma~~~--erPIIFaLSNPt 447 (589)
..+.|........++.+++.. .|++|-+++.+ ..++++.++.+.+.. ...+|+=||+|-
T Consensus 222 la~~~g~~~~~~~~~~~~l~~--aDvVI~aT~s~~~~i~~~~l~~~~~~~~~~~~vviDla~Pr 283 (423)
T PRK00045 222 LAEEFGGEAIPLDELPEALAE--ADIVISSTGAPHPIIGKGMVERALKARRHRPLLLVDLAVPR 283 (423)
T ss_pred HHHHcCCcEeeHHHHHHHhcc--CCEEEECCCCCCcEEcHHHHHHHHhhccCCCeEEEEeCCCC
Confidence 111121011112356677764 89999988755 478999999875322 345888999997
No 25
>PRK14982 acyl-ACP reductase; Provisional
Probab=96.77 E-value=0.011 Score=63.45 Aligned_cols=113 Identities=22% Similarity=0.345 Sum_probs=80.0
Q ss_pred hHHHHHHHHHHHHHHhCCCCCCceEEEeCc-ChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEcccCcccCCcccCCch
Q 007802 308 TASVVLAGILSALKLVGGTLADQTFLFLGA-GEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLIVSSRKESLQH 386 (589)
Q Consensus 308 TaaV~lAgll~Alr~~g~~l~d~riv~~GA-GsAg~GiA~ll~~~~~~~~G~s~eeA~~~i~~vD~~GLv~~~r~~~l~~ 386 (589)
|+++...++--+.+..|..|++.++++.|| |+.|--++++|... .|. +++++++++ ..| +..
T Consensus 134 T~~ll~~~V~la~~~lg~~l~~k~VLVtGAtG~IGs~lar~L~~~----~gv------~~lilv~R~----~~r---l~~ 196 (340)
T PRK14982 134 TAYVICRQVEQNAPRLGIDLSKATVAVVGATGDIGSAVCRWLDAK----TGV------AELLLVARQ----QER---LQE 196 (340)
T ss_pred HHHHHHHHHHHhHHHhccCcCCCEEEEEccChHHHHHHHHHHHhh----CCC------CEEEEEcCC----HHH---HHH
Confidence 778888889899999999999999999999 89999999988642 233 578888764 112 333
Q ss_pred hchhhhcccCCCCCHHHHHhccCCcEEEeecCCCCC--CCHHHHHHHHcCCCCc-EEEecCCCCC
Q 007802 387 FKKPWAHEHAPIKSLLDAVKAIKPTMLMGTSGVGKT--FTKEVVEAMASFNEKP-VIFALSNPTS 448 (589)
Q Consensus 387 ~k~~fa~~~~~~~~L~e~V~~vkPtvLIG~S~~~g~--Fteevv~~Ma~~~erP-IIFaLSNPt~ 448 (589)
.+.++.+ ....+|.+++.. +|++|=+++.+.. .+++.+ ++| +|+=++.|-.
T Consensus 197 La~el~~--~~i~~l~~~l~~--aDiVv~~ts~~~~~~I~~~~l-------~~~~~viDiAvPRD 250 (340)
T PRK14982 197 LQAELGG--GKILSLEEALPE--ADIVVWVASMPKGVEIDPETL-------KKPCLMIDGGYPKN 250 (340)
T ss_pred HHHHhcc--ccHHhHHHHHcc--CCEEEECCcCCcCCcCCHHHh-------CCCeEEEEecCCCC
Confidence 3333421 223468888875 9999988776433 677655 344 5566899874
No 26
>PTZ00079 NADP-specific glutamate dehydrogenase; Provisional
Probab=96.63 E-value=0.12 Score=57.51 Aligned_cols=188 Identities=19% Similarity=0.214 Sum_probs=129.8
Q ss_pred CChhhHHHHHHHHHHHHHHhcCCceeeEeecCCCccHHH---HHHHHcC---CC-ceec----------cCCCchHHHHH
Q 007802 251 ATGQEYAELLQEFMTAVKQNYGEKVLIQFEDFANHNAFE---LLSKYSS---SH-LVFN----------DDIQGTASVVL 313 (589)
Q Consensus 251 ~~g~~y~~fidefv~av~~~fGp~~lIq~EDf~~~~Af~---iL~ryr~---~~-~~Fn----------DDiQGTaaV~l 313 (589)
.+..|-..|...||..+.+..||..-|-=.|++. ++.+ +.+.|+. .. .++- +--.-||-=++
T Consensus 143 ~s~~El~r~~r~f~~eL~~~IGp~~DvpA~DvGt-~~rem~~~~~~y~~~~~~~~gv~TGK~~~~GGs~~r~eATG~Gv~ 221 (454)
T PTZ00079 143 KSDNEVMRFCQSFMTELYRHIGPDTDVPAGDIGV-GGREIGYLFGQYKKLRNNFEGTLTGKNVKWGGSNIRPEATGYGLV 221 (454)
T ss_pred CCHHHHHHHHHHHHHHHHHhcCCCCccchhhcCC-CHHHHHHHHHHHHHHhCCCCceeCCCCCCCCCCCCCCcccHHHHH
Confidence 4556678999999999999999999999999984 3333 5566642 22 2211 11224777778
Q ss_pred HHHHHHHHHhCCCCCCceEEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeEE-EEcccCcccCCcccCCchhch---
Q 007802 314 AGILSALKLVGGTLADQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIW-LVDSKGLIVSSRKESLQHFKK--- 389 (589)
Q Consensus 314 Agll~Alr~~g~~l~d~riv~~GAGsAg~GiA~ll~~~~~~~~G~s~eeA~~~i~-~vD~~GLv~~~r~~~l~~~k~--- 389 (589)
.++-.+++..+.+|++.|++|-|.|..|...|+.|.+ .|. +++ +.|++|-|+... .|+..+.
T Consensus 222 ~~~~~~l~~~~~~l~Gk~VaVqG~GnVg~~aa~~L~e-----~Ga-------kVVavSD~~G~iy~~~--Gld~~~l~~l 287 (454)
T PTZ00079 222 YFVLEVLKKLNDSLEGKTVVVSGSGNVAQYAVEKLLQ-----LGA-------KVLTMSDSDGYIHEPN--GFTKEKLAYL 287 (454)
T ss_pred HHHHHHHHHcCCCcCCCEEEEECCCHHHHHHHHHHHH-----CCC-------EEEEEEcCCCcEECCC--CCCHHHHHHH
Confidence 8888999999999999999999999999999998865 363 455 999999999875 4544332
Q ss_pred ------------hhhcccCCCC--CHHHHHhccCCcEEEeecCCCCCCCHHHHHHHHcCCCCcEEEecCC-CCCCCCCCH
Q 007802 390 ------------PWAHEHAPIK--SLLDAVKAIKPTMLMGTSGVGKTFTKEVVEAMASFNEKPVIFALSN-PTSQSECTA 454 (589)
Q Consensus 390 ------------~fa~~~~~~~--~L~e~V~~vkPtvLIG~S~~~g~Fteevv~~Ma~~~erPIIFaLSN-Pt~~~E~t~ 454 (589)
.|+...+..+ +-. .+-.++.||||=+.. .+..|++-.+.+-+ +.-.+|.=-+| |++. | +
T Consensus 288 ~~~k~~~~g~i~~~~~~~~~a~~~~~~-~~~~~~cDI~iPcA~-~n~I~~~~a~~l~~-~~ak~V~EgAN~p~t~-e--A 361 (454)
T PTZ00079 288 MDLKNVKRGRLKEYAKHSSTAKYVPGK-KPWEVPCDIAFPCAT-QNEINLEDAKLLIK-NGCKLVAEGANMPTTI-E--A 361 (454)
T ss_pred HHHHhhcCCcHHhhhhccCCcEEeCCc-CcccCCccEEEeccc-cccCCHHHHHHHHH-cCCeEEEecCCCCCCH-H--H
Confidence 1211000000 111 122368899997777 56999999998854 34668888888 6632 2 4
Q ss_pred HHHhc
Q 007802 455 EEAYT 459 (589)
Q Consensus 455 eda~~ 459 (589)
++.++
T Consensus 362 ~~~L~ 366 (454)
T PTZ00079 362 THLFK 366 (454)
T ss_pred HHHHH
Confidence 45554
No 27
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=96.62 E-value=0.016 Score=56.28 Aligned_cols=91 Identities=24% Similarity=0.327 Sum_probs=68.8
Q ss_pred HHHHHHHHHHhCCCCCCceEEEeCcCh-HHHHHHHHHHHHHHhccCCCHHhhcCeEEEEcccCcccCCcccCCchhchhh
Q 007802 313 LAGILSALKLVGGTLADQTFLFLGAGE-AGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLIVSSRKESLQHFKKPW 391 (589)
Q Consensus 313 lAgll~Alr~~g~~l~d~riv~~GAGs-Ag~GiA~ll~~~~~~~~G~s~eeA~~~i~~vD~~GLv~~~r~~~l~~~k~~f 391 (589)
..+.+-.++-...+|++.+++++|+|. .|..+|+.|.. .|. ++++++++
T Consensus 28 ~~a~v~l~~~~~~~l~gk~vlViG~G~~~G~~~a~~L~~-----~g~-------~V~v~~r~------------------ 77 (168)
T cd01080 28 PAGILELLKRYGIDLAGKKVVVVGRSNIVGKPLAALLLN-----RNA-------TVTVCHSK------------------ 77 (168)
T ss_pred HHHHHHHHHHcCCCCCCCEEEEECCcHHHHHHHHHHHhh-----CCC-------EEEEEECC------------------
Confidence 333444555556789999999999997 59889888864 242 58888864
Q ss_pred hcccCCCCCHHHHHhccCCcEEEeecCCCCCCCHHHHHHHHcCCCCcEEEecCCCC
Q 007802 392 AHEHAPIKSLLDAVKAIKPTMLMGTSGVGKTFTKEVVEAMASFNEKPVIFALSNPT 447 (589)
Q Consensus 392 a~~~~~~~~L~e~V~~vkPtvLIG~S~~~g~Fteevv~~Ma~~~erPIIFaLSNPt 447 (589)
..+|.+.++. .|++|.+++.+..|+++.++ +.-+|+=|+.|-
T Consensus 78 ------~~~l~~~l~~--aDiVIsat~~~~ii~~~~~~------~~~viIDla~pr 119 (168)
T cd01080 78 ------TKNLKEHTKQ--ADIVIVAVGKPGLVKGDMVK------PGAVVIDVGINR 119 (168)
T ss_pred ------chhHHHHHhh--CCEEEEcCCCCceecHHHcc------CCeEEEEccCCC
Confidence 0357788886 99999999998899999764 346888888886
No 28
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=96.57 E-value=0.018 Score=60.05 Aligned_cols=138 Identities=19% Similarity=0.269 Sum_probs=90.7
Q ss_pred CchHHHHHHHHHHHHHHhCCCCCCceEEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEcccCcccCCcccCCc
Q 007802 306 QGTASVVLAGILSALKLVGGTLADQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLIVSSRKESLQ 385 (589)
Q Consensus 306 QGTaaV~lAgll~Alr~~g~~l~d~riv~~GAGsAg~GiA~ll~~~~~~~~G~s~eeA~~~i~~vD~~GLv~~~r~~~l~ 385 (589)
..+-+++=.++..+++..+..|.+.+++|+|+|.+|..+|+.+.. .|. +++++|++. . .+.
T Consensus 128 ~n~~~~Ae~ai~~al~~~~~~l~gk~v~IiG~G~iG~avA~~L~~-----~G~-------~V~v~~R~~----~---~~~ 188 (287)
T TIGR02853 128 YNSIPTAEGAIMMAIEHTDFTIHGSNVMVLGFGRTGMTIARTFSA-----LGA-------RVFVGARSS----A---DLA 188 (287)
T ss_pred EccHhHHHHHHHHHHHhcCCCCCCCEEEEEcChHHHHHHHHHHHH-----CCC-------EEEEEeCCH----H---HHH
Confidence 445566666677777888889999999999999999999998864 253 588888741 1 111
Q ss_pred hhchhhhcccCCCCCHHHHHhccCCcEEEeecCCCCCCCHHHHHHHHcCCCCcEEEecCCCCCCCCCCHHHHhccccCcE
Q 007802 386 HFKKPWAHEHAPIKSLLDAVKAIKPTMLMGTSGVGKTFTKEVVEAMASFNEKPVIFALSNPTSQSECTAEEAYTWSKGQA 465 (589)
Q Consensus 386 ~~k~~fa~~~~~~~~L~e~V~~vkPtvLIG~S~~~g~Fteevv~~Ma~~~erPIIFaLSNPt~~~E~t~eda~~wT~Gra 465 (589)
..+ .+....-...+|.+.+++ .|++|=+. ..+.++++.++.|. +.-+|+=+|..- -++.++.|-+ -.-++
T Consensus 189 ~~~-~~g~~~~~~~~l~~~l~~--aDiVint~-P~~ii~~~~l~~~k---~~aliIDlas~P--g~tdf~~Ak~-~G~~a 258 (287)
T TIGR02853 189 RIT-EMGLIPFPLNKLEEKVAE--IDIVINTI-PALVLTADVLSKLP---KHAVIIDLASKP--GGTDFEYAKK-RGIKA 258 (287)
T ss_pred HHH-HCCCeeecHHHHHHHhcc--CCEEEECC-ChHHhCHHHHhcCC---CCeEEEEeCcCC--CCCCHHHHHH-CCCEE
Confidence 111 000011112457777764 89999654 34578999998885 456888776532 4666655443 34478
Q ss_pred EEeeCCC
Q 007802 466 IFASGSP 472 (589)
Q Consensus 466 ifAsGSP 472 (589)
+.+-|-|
T Consensus 259 ~~~~glP 265 (287)
T TIGR02853 259 LLAPGLP 265 (287)
T ss_pred EEeCCCC
Confidence 8888865
No 29
>PLN02494 adenosylhomocysteinase
Probab=96.55 E-value=0.033 Score=62.29 Aligned_cols=130 Identities=15% Similarity=0.236 Sum_probs=93.4
Q ss_pred CCceec----------cCCCchHHHHHHHHHHHHHHhCCCCCCceEEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCe
Q 007802 297 SHLVFN----------DDIQGTASVVLAGILSALKLVGGTLADQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKK 366 (589)
Q Consensus 297 ~~~~Fn----------DDiQGTaaV~lAgll~Alr~~g~~l~d~riv~~GAGsAg~GiA~ll~~~~~~~~G~s~eeA~~~ 366 (589)
.+|++| |...||+--++-|++ |.++..+.+.+++|+|.|..|.++|..+.. .|+ +
T Consensus 215 ~~Pvi~vnds~~K~~fDn~yGtgqS~~d~i~---r~t~i~LaGKtVvViGyG~IGr~vA~~aka-----~Ga-------~ 279 (477)
T PLN02494 215 LFPAINVNDSVTKSKFDNLYGCRHSLPDGLM---RATDVMIAGKVAVICGYGDVGKGCAAAMKA-----AGA-------R 279 (477)
T ss_pred CCCEEEEcChhhhhhhhccccccccHHHHHH---HhcCCccCCCEEEEECCCHHHHHHHHHHHH-----CCC-------E
Confidence 677776 456898888877776 567788999999999999999999998843 263 4
Q ss_pred EEEEcccCcccCCcccCCchhchhhhcc-cCCCCCHHHHHhccCCcEEEeecCCCCCCCHHHHHHHHcCCCCcEEEecCC
Q 007802 367 IWLVDSKGLIVSSRKESLQHFKKPWAHE-HAPIKSLLDAVKAIKPTMLMGTSGVGKTFTKEVVEAMASFNEKPVIFALSN 445 (589)
Q Consensus 367 i~~vD~~GLv~~~r~~~l~~~k~~fa~~-~~~~~~L~e~V~~vkPtvLIG~S~~~g~Fteevv~~Ma~~~erPIIFaLSN 445 (589)
++++|.+.. +...|.. .-...++.|+++. .|++|=+++..++++++.++.|. +.-++.-.+.
T Consensus 280 VIV~e~dp~------------r~~eA~~~G~~vv~leEal~~--ADVVI~tTGt~~vI~~e~L~~MK---~GAiLiNvGr 342 (477)
T PLN02494 280 VIVTEIDPI------------CALQALMEGYQVLTLEDVVSE--ADIFVTTTGNKDIIMVDHMRKMK---NNAIVCNIGH 342 (477)
T ss_pred EEEEeCCch------------hhHHHHhcCCeeccHHHHHhh--CCEEEECCCCccchHHHHHhcCC---CCCEEEEcCC
Confidence 777776421 1111111 0111368888875 89999877777788999999885 5668888888
Q ss_pred CCCCCCCCHHHHhcc
Q 007802 446 PTSQSECTAEEAYTW 460 (589)
Q Consensus 446 Pt~~~E~t~eda~~w 460 (589)
+. .|+.-++..++
T Consensus 343 ~~--~eID~~aL~~~ 355 (477)
T PLN02494 343 FD--NEIDMLGLETY 355 (477)
T ss_pred CC--CccCHHHHhhc
Confidence 65 78877766654
No 30
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=96.48 E-value=0.0042 Score=57.44 Aligned_cols=102 Identities=22% Similarity=0.397 Sum_probs=67.2
Q ss_pred CCCCCceEEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEcccCcccCCcccCCchhchhhhcc---cCCCCCH
Q 007802 325 GTLADQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLIVSSRKESLQHFKKPWAHE---HAPIKSL 401 (589)
Q Consensus 325 ~~l~d~riv~~GAGsAg~GiA~ll~~~~~~~~G~s~eeA~~~i~~vD~~GLv~~~r~~~l~~~k~~fa~~---~~~~~~L 401 (589)
.+|++.|++++|||.+|-+++..|.. .|. ++|+++++. .+| .....+.|... .....++
T Consensus 8 ~~l~~~~vlviGaGg~ar~v~~~L~~-----~g~------~~i~i~nRt----~~r---a~~l~~~~~~~~~~~~~~~~~ 69 (135)
T PF01488_consen 8 GDLKGKRVLVIGAGGAARAVAAALAA-----LGA------KEITIVNRT----PER---AEALAEEFGGVNIEAIPLEDL 69 (135)
T ss_dssp STGTTSEEEEESSSHHHHHHHHHHHH-----TTS------SEEEEEESS----HHH---HHHHHHHHTGCSEEEEEGGGH
T ss_pred CCcCCCEEEEECCHHHHHHHHHHHHH-----cCC------CEEEEEECC----HHH---HHHHHHHcCccccceeeHHHH
Confidence 38999999999999999888887765 365 789999874 222 22333333110 1123456
Q ss_pred HHHHhccCCcEEEeecCCCC-CCCHHHHHHHHcCCCCcEEEecCCCCC
Q 007802 402 LDAVKAIKPTMLMGTSGVGK-TFTKEVVEAMASFNEKPVIFALSNPTS 448 (589)
Q Consensus 402 ~e~V~~vkPtvLIG~S~~~g-~Fteevv~~Ma~~~erPIIFaLSNPt~ 448 (589)
.+.+.. .|++|-+++.+. .++++.++...+. ..+||=||+|-.
T Consensus 70 ~~~~~~--~DivI~aT~~~~~~i~~~~~~~~~~~--~~~v~Dla~Pr~ 113 (135)
T PF01488_consen 70 EEALQE--ADIVINATPSGMPIITEEMLKKASKK--LRLVIDLAVPRD 113 (135)
T ss_dssp CHHHHT--ESEEEE-SSTTSTSSTHHHHTTTCHH--CSEEEES-SS-S
T ss_pred HHHHhh--CCeEEEecCCCCcccCHHHHHHHHhh--hhceeccccCCC
Confidence 677775 999999887663 7888888754211 249999999964
No 31
>PRK14030 glutamate dehydrogenase; Provisional
Probab=96.46 E-value=0.12 Score=57.41 Aligned_cols=189 Identities=16% Similarity=0.153 Sum_probs=130.5
Q ss_pred CChhhHHHHHHHHHHHHHHhcCCceeeEeecCCCccHHH---HHHHHcC----CCceecc---CC-------CchHHHHH
Q 007802 251 ATGQEYAELLQEFMTAVKQNYGEKVLIQFEDFANHNAFE---LLSKYSS----SHLVFND---DI-------QGTASVVL 313 (589)
Q Consensus 251 ~~g~~y~~fidefv~av~~~fGp~~lIq~EDf~~~~Af~---iL~ryr~----~~~~FnD---Di-------QGTaaV~l 313 (589)
.+..|-..|.-.||..+.+..||+.=|-=.|++. ++.. +++.|+. ...++.- +. .-||-=+.
T Consensus 134 ~s~~Eler~~r~f~~~L~~~iGp~~DIpApDvgt-~~~~M~w~~d~y~~~~~~~~g~vTGkp~~~gGs~gr~~ATg~Gv~ 212 (445)
T PRK14030 134 KSDAEIMRFCQAFMLELWRHIGPDTDVPAGDIGV-GGREVGYMFGMYKKLTREFTGTLTGKGLEFGGSLIRPEATGFGAL 212 (445)
T ss_pred CCHHHHHHHHHHHHHHHHHhcCCCCCccccccCC-CHHHHHHHHHHHHhccCccccEEEccccccCCCCCCCCccHHHHH
Confidence 4556788999999999998889988888888884 3333 5677754 2222211 12 23888888
Q ss_pred HHHHHHHHHhCCCCCCceEEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEcccCcccCCcccCCchhchh---
Q 007802 314 AGILSALKLVGGTLADQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLIVSSRKESLQHFKKP--- 390 (589)
Q Consensus 314 Agll~Alr~~g~~l~d~riv~~GAGsAg~GiA~ll~~~~~~~~G~s~eeA~~~i~~vD~~GLv~~~r~~~l~~~k~~--- 390 (589)
.++-.+++..|.+|++.||+|-|.|..|...|+.|.+ .|. +=+-+-|++|-|++.. .|+..+..
T Consensus 213 ~~~~~~~~~~g~~l~g~~vaIQGfGnVG~~aA~~L~e-----~Ga------kvVavSD~~G~i~d~~--Gld~~~l~~l~ 279 (445)
T PRK14030 213 YFVHQMLETKGIDIKGKTVAISGFGNVAWGAATKATE-----LGA------KVVTISGPDGYIYDPD--GISGEKIDYML 279 (445)
T ss_pred HHHHHHHHHcCCCcCCCEEEEECCCHHHHHHHHHHHH-----CCC------EEEEEEcCCceEECCC--CCCHHHHHHHH
Confidence 8888999999999999999999999999999998865 364 5577789999998764 35543311
Q ss_pred ------------hhcccCCCC--CHHHHHhccCCcEEEeecCCCCCCCHHHHHHHHcCCCCcEEEecCC-CCCCCCCCHH
Q 007802 391 ------------WAHEHAPIK--SLLDAVKAIKPTMLMGTSGVGKTFTKEVVEAMASFNEKPVIFALSN-PTSQSECTAE 455 (589)
Q Consensus 391 ------------fa~~~~~~~--~L~e~V~~vkPtvLIG~S~~~g~Fteevv~~Ma~~~erPIIFaLSN-Pt~~~E~t~e 455 (589)
+....+..+ +-.+ +-.++.||||=+.. .+..|++.++.+.+ +.-.||.=-+| |++ +| ++
T Consensus 280 ~~k~~~~~~~~~~~~~~~ga~~i~~~~-~~~~~cDVliPcAl-~n~I~~~na~~l~~-~~ak~V~EgAN~p~t-~e--A~ 353 (445)
T PRK14030 280 ELRASGNDIVAPYAEKFPGSTFFAGKK-PWEQKVDIALPCAT-QNELNGEDADKLIK-NGVLCVAEVSNMGCT-AE--AI 353 (445)
T ss_pred HHHHhcCccHHHHHhcCCCCEEcCCcc-ceeccccEEeeccc-cccCCHHHHHHHHH-cCCeEEEeCCCCCCC-HH--HH
Confidence 111100100 1112 22467899997666 57999999999854 35679999998 543 33 44
Q ss_pred HHhc
Q 007802 456 EAYT 459 (589)
Q Consensus 456 da~~ 459 (589)
+++.
T Consensus 354 ~iL~ 357 (445)
T PRK14030 354 DKFI 357 (445)
T ss_pred HHHH
Confidence 5554
No 32
>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]
Probab=96.05 E-value=0.027 Score=61.98 Aligned_cols=215 Identities=21% Similarity=0.296 Sum_probs=130.6
Q ss_pred ccHHHHHHHHcCCCceeccCCCchHHHHHHHHHHHHHHhCCCCCCceEEEeCcChHHHHHHHHHHHHHHhccCCCHHhhc
Q 007802 285 HNAFELLSKYSSSHLVFNDDIQGTASVVLAGILSALKLVGGTLADQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEAR 364 (589)
Q Consensus 285 ~~Af~iL~ryr~~~~~FnDDiQGTaaV~lAgll~Alr~~g~~l~d~riv~~GAGsAg~GiA~ll~~~~~~~~G~s~eeA~ 364 (589)
..||..=+|+|.+--+ -.|--+|.-|++--|-++.|. |++.+++|+|||..|..+|+.|... |+
T Consensus 139 qkAi~~gKrvRseT~I----~~~~VSi~saAv~lA~~~~~~-L~~~~vlvIGAGem~~lva~~L~~~-----g~------ 202 (414)
T COG0373 139 QKAISVGKRVRSETGI----GKGAVSISSAAVELAKRIFGS-LKDKKVLVIGAGEMGELVAKHLAEK-----GV------ 202 (414)
T ss_pred HHHHHHHHHhhcccCC----CCCccchHHHHHHHHHHHhcc-cccCeEEEEcccHHHHHHHHHHHhC-----CC------
Confidence 4555566666643110 123335555555556666555 9999999999999999999888663 65
Q ss_pred CeEEEEcccCcccCCcccCCchhchhhhccc----CCCCCHHHHHhccCCcEEEeec-CCCCCCCHHHHHHHHcCCCCcE
Q 007802 365 KKIWLVDSKGLIVSSRKESLQHFKKPWAHEH----APIKSLLDAVKAIKPTMLMGTS-GVGKTFTKEVVEAMASFNEKPV 439 (589)
Q Consensus 365 ~~i~~vD~~GLv~~~r~~~l~~~k~~fa~~~----~~~~~L~e~V~~vkPtvLIG~S-~~~g~Fteevv~~Ma~~~erPI 439 (589)
++|+++.+. ..|. +.+|+.- -....|.+.+.. .||+|-.+ +..-+++.+.++.-.+..++=+
T Consensus 203 ~~i~IaNRT----~erA-------~~La~~~~~~~~~l~el~~~l~~--~DvVissTsa~~~ii~~~~ve~a~~~r~~~l 269 (414)
T COG0373 203 KKITIANRT----LERA-------EELAKKLGAEAVALEELLEALAE--ADVVISSTSAPHPIITREMVERALKIRKRLL 269 (414)
T ss_pred CEEEEEcCC----HHHH-------HHHHHHhCCeeecHHHHHHhhhh--CCEEEEecCCCccccCHHHHHHHHhcccCeE
Confidence 788887763 2221 2233321 122456677765 88888654 4446889998887665454559
Q ss_pred EEecCCCCCCCCCCHHHHhccccCcEEEeeCCCCCcceeCCeeeCCCCccccccchhhhHHHHHhCCcccCHHHHHHHHH
Q 007802 440 IFALSNPTSQSECTAEEAYTWSKGQAIFASGSPFDPVEYNGKVFVPGQGNNAYIFPGLGLGLIISGAIRVRDEMLLAASE 519 (589)
Q Consensus 440 IFaLSNPt~~~E~t~eda~~wT~GraifAsGSPf~pv~~~G~~~~p~Q~NN~~iFPGiglG~~~~~a~~Itd~m~~aAA~ 519 (589)
||=|+||-.- .+ ..+.-+|+++|-==-|-.+.-.-..-..+...+ |+
T Consensus 270 ivDiavPRdi---------e~-----------------------~v~~l~~v~l~~iDDL~~iv~~n~~~R~~~~~~-ae 316 (414)
T COG0373 270 IVDIAVPRDV---------EP-----------------------EVGELPNVFLYTIDDLEEIVEENLEARKEEAAK-AE 316 (414)
T ss_pred EEEecCCCCC---------Cc-----------------------cccCcCCeEEEehhhHHHHHHHhHHHHHHHHHH-HH
Confidence 9999999831 11 123455666665555555543333323332222 22
Q ss_pred HH-----HhccCcccCCCCCccCCCCCchhhHHHHHHHHHHHHHHcCCC
Q 007802 520 AL-----AAQVTQEHFDKGLIYPPFTNIRKISAHIAAKVAAKAYDLGLA 563 (589)
Q Consensus 520 aL-----A~~v~~~~l~~g~l~P~l~~ireVs~~VA~aVa~~A~~~GvA 563 (589)
++ +++. +.+..-.+-|.+.++|+-+..|...-.+.|.+.--.
T Consensus 317 ~iIeee~~~~~--~~l~~~~~~~~i~~lr~~a~~v~~~ele~a~~~l~~ 363 (414)
T COG0373 317 AIIEEELAEFM--EWLKKLEVVPTIRALREQAEDVREEELEKALKKLPN 363 (414)
T ss_pred HHHHHHHHHHH--HHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 22 1111 123455688999999988888888888888765443
No 33
>cd01076 NAD_bind_1_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 1. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids
Probab=96.00 E-value=0.057 Score=54.66 Aligned_cols=132 Identities=23% Similarity=0.289 Sum_probs=92.5
Q ss_pred CchHHHHHHHHHHHHHHhCCCCCCceEEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEcccCcccCCcccCCc
Q 007802 306 QGTASVVLAGILSALKLVGGTLADQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLIVSSRKESLQ 385 (589)
Q Consensus 306 QGTaaV~lAgll~Alr~~g~~l~d~riv~~GAGsAg~GiA~ll~~~~~~~~G~s~eeA~~~i~~vD~~GLv~~~r~~~l~ 385 (589)
+-||-=+..++-.+++..+.+|++.||+|.|-|..|.++|++|.+. |. +=+.+.|++|-++...+ |+
T Consensus 8 ~~Tg~Gv~~~~~~~~~~~~~~l~~~~v~I~G~G~VG~~~a~~L~~~-----g~------~vv~v~D~~g~~~~~~G--ld 74 (227)
T cd01076 8 EATGRGVAYATREALKKLGIGLAGARVAIQGFGNVGSHAARFLHEA-----GA------KVVAVSDSDGTIYNPDG--LD 74 (227)
T ss_pred ccchHHHHHHHHHHHHhcCCCccCCEEEEECCCHHHHHHHHHHHHC-----CC------EEEEEECCCCeEECCCC--CC
Confidence 4567777788888888889999999999999999999999988653 53 44559999999988653 43
Q ss_pred hhch-hhhcccCC--------CCCHHHHHhccCCcEEEeecCCCCCCCHHHHHHHHcCCCCcEEEecCC-CCCCCCCCHH
Q 007802 386 HFKK-PWAHEHAP--------IKSLLDAVKAIKPTMLMGTSGVGKTFTKEVVEAMASFNEKPVIFALSN-PTSQSECTAE 455 (589)
Q Consensus 386 ~~k~-~fa~~~~~--------~~~L~e~V~~vkPtvLIG~S~~~g~Fteevv~~Ma~~~erPIIFaLSN-Pt~~~E~t~e 455 (589)
.... .+.+.... .-+-.+ +-..+.||||=++ .++..|++.+..+ .-++|.--+| |++ +| ++
T Consensus 75 ~~~l~~~~~~~g~l~~~~~~~~~~~~~-i~~~~~Dvlip~a-~~~~i~~~~~~~l----~a~~I~egAN~~~t-~~--a~ 145 (227)
T cd01076 75 VPALLAYKKEHGSVLGFPGAERITNEE-LLELDCDILIPAA-LENQITADNADRI----KAKIIVEAANGPTT-PE--AD 145 (227)
T ss_pred HHHHHHHHHhcCCcccCCCceecCCcc-ceeecccEEEecC-ccCccCHHHHhhc----eeeEEEeCCCCCCC-HH--HH
Confidence 2221 11111110 011223 3345889999777 5779999999988 5899999999 553 33 44
Q ss_pred HHhc
Q 007802 456 EAYT 459 (589)
Q Consensus 456 da~~ 459 (589)
+.++
T Consensus 146 ~~L~ 149 (227)
T cd01076 146 EILH 149 (227)
T ss_pred HHHH
Confidence 5543
No 34
>cd05313 NAD_bind_2_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 2. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia asimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids t
Probab=95.95 E-value=0.15 Score=52.94 Aligned_cols=134 Identities=18% Similarity=0.124 Sum_probs=91.4
Q ss_pred chHHHHHHHHHHHHHHhCCCCCCceEEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEcccCcccCCcccCCch
Q 007802 307 GTASVVLAGILSALKLVGGTLADQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLIVSSRKESLQH 386 (589)
Q Consensus 307 GTaaV~lAgll~Alr~~g~~l~d~riv~~GAGsAg~GiA~ll~~~~~~~~G~s~eeA~~~i~~vD~~GLv~~~r~~~l~~ 386 (589)
-||-=+.-++-.+++..+.+|++.||+|-|-|..|.+.|++|.+ .|. +=+-+.|++|-|+... .|+.
T Consensus 16 aTg~Gv~~~~~~~~~~~~~~l~g~~vaIqGfGnVG~~~a~~L~e-----~Ga------kvvaVsD~~G~i~~~~--Gld~ 82 (254)
T cd05313 16 ATGYGLVYFVEEMLKDRNETLKGKRVAISGSGNVAQYAAEKLLE-----LGA------KVVTLSDSKGYVYDPD--GFTG 82 (254)
T ss_pred hhHHHHHHHHHHHHHhcCCCcCCCEEEEECCCHHHHHHHHHHHH-----CCC------EEEEEECCCceEECCC--CCCH
Confidence 46666677778888888999999999999999999999999865 263 3344999999998875 3442
Q ss_pred hch---------------hhhcccC--CCCCHHHHHhccCCcEEEeecCCCCCCCHHHHHHHHcCCCCcEEEecCC-CCC
Q 007802 387 FKK---------------PWAHEHA--PIKSLLDAVKAIKPTMLMGTSGVGKTFTKEVVEAMASFNEKPVIFALSN-PTS 448 (589)
Q Consensus 387 ~k~---------------~fa~~~~--~~~~L~e~V~~vkPtvLIG~S~~~g~Fteevv~~Ma~~~erPIIFaLSN-Pt~ 448 (589)
.+. .|....+ ..-+-.|.. .++.||||=+.. .+..|++.+..+-+ ++-.||.--+| |++
T Consensus 83 ~~l~~l~~~~~~~~~~v~~~~~~~~~a~~~~~~~~~-~~~~DIliPcAl-~~~I~~~na~~i~~-~~ak~I~EgAN~p~t 159 (254)
T cd05313 83 EKLAELKEIKEVRRGRVSEYAKKYGTAKYFEGKKPW-EVPCDIAFPCAT-QNEVDAEDAKLLVK-NGCKYVAEGANMPCT 159 (254)
T ss_pred HHHHHHHHHHHhcCCcHHHHhhcCCCCEEeCCcchh-cCCCcEEEeccc-cccCCHHHHHHHHH-cCCEEEEeCCCCCCC
Confidence 211 1110000 001222322 457899996655 67999999999843 35789999999 773
Q ss_pred CCCCCHHHHhc
Q 007802 449 QSECTAEEAYT 459 (589)
Q Consensus 449 ~~E~t~eda~~ 459 (589)
. .+++.+.
T Consensus 160 ~---~a~~~L~ 167 (254)
T cd05313 160 A---EAIEVFR 167 (254)
T ss_pred H---HHHHHHH
Confidence 2 3445554
No 35
>PTZ00075 Adenosylhomocysteinase; Provisional
Probab=95.93 E-value=0.17 Score=56.72 Aligned_cols=122 Identities=18% Similarity=0.189 Sum_probs=83.5
Q ss_pred CCceeccCCCchHHHH-------HHHHHHHHHHhCCCCCCceEEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeEEE
Q 007802 297 SHLVFNDDIQGTASVV-------LAGILSALKLVGGTLADQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWL 369 (589)
Q Consensus 297 ~~~~FnDDiQGTaaV~-------lAgll~Alr~~g~~l~d~riv~~GAGsAg~GiA~ll~~~~~~~~G~s~eeA~~~i~~ 369 (589)
.+|++|=+---|-++. ++.+=+.+|.++..|++.+++|+|.|..|.++|+.+.. .|+ ++++
T Consensus 215 ~iPV~nv~d~~tk~~aD~~~G~~~s~~d~~~R~~~~~LaGKtVgVIG~G~IGr~vA~rL~a-----~Ga-------~ViV 282 (476)
T PTZ00075 215 LFPAINVNDSVTKSKFDNIYGCRHSLIDGIFRATDVMIAGKTVVVCGYGDVGKGCAQALRG-----FGA-------RVVV 282 (476)
T ss_pred CceEEEeCCcchHHHHHHHHHHHHHHHHHHHHhcCCCcCCCEEEEECCCHHHHHHHHHHHH-----CCC-------EEEE
Confidence 6888886554444432 44445556778899999999999999999999998854 263 4777
Q ss_pred EcccCcccCCcccCCchhchhhhcccCCCCCHHHHHhccCCcEEEeecCCCCCCCHHHHHHHHcCCCCcEEEecCCC
Q 007802 370 VDSKGLIVSSRKESLQHFKKPWAHEHAPIKSLLDAVKAIKPTMLMGTSGVGKTFTKEVVEAMASFNEKPVIFALSNP 446 (589)
Q Consensus 370 vD~~GLv~~~r~~~l~~~k~~fa~~~~~~~~L~e~V~~vkPtvLIG~S~~~g~Fteevv~~Ma~~~erPIIFaLSNP 446 (589)
+|++-. +. +.... +.-...++.|+++. .|++|-+.+..++|+++.++.|. +.-|+.-.+..
T Consensus 283 ~e~dp~----~a--~~A~~-----~G~~~~~leell~~--ADIVI~atGt~~iI~~e~~~~MK---pGAiLINvGr~ 343 (476)
T PTZ00075 283 TEIDPI----CA--LQAAM-----EGYQVVTLEDVVET--ADIFVTATGNKDIITLEHMRRMK---NNAIVGNIGHF 343 (476)
T ss_pred EeCCch----hH--HHHHh-----cCceeccHHHHHhc--CCEEEECCCcccccCHHHHhccC---CCcEEEEcCCC
Confidence 766411 10 11011 11112468888875 89999888878899999999996 45566666655
No 36
>PLN00203 glutamyl-tRNA reductase
Probab=95.91 E-value=0.029 Score=63.34 Aligned_cols=202 Identities=18% Similarity=0.258 Sum_probs=115.6
Q ss_pred chHHHHHHHHHHHHHHhCC-CCCCceEEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEcccCcccCCcccCCc
Q 007802 307 GTASVVLAGILSALKLVGG-TLADQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLIVSSRKESLQ 385 (589)
Q Consensus 307 GTaaV~lAgll~Alr~~g~-~l~d~riv~~GAGsAg~GiA~ll~~~~~~~~G~s~eeA~~~i~~vD~~GLv~~~r~~~l~ 385 (589)
|--+|+-+++=-|.+.-|. +|++.+|+|+|||..|..+++.+.. .|. ++|+++++. .++ ..
T Consensus 243 ~~vSv~s~Av~la~~~~~~~~l~~kkVlVIGAG~mG~~~a~~L~~-----~G~------~~V~V~nRs----~er---a~ 304 (519)
T PLN00203 243 GAVSVSSAAVELALMKLPESSHASARVLVIGAGKMGKLLVKHLVS-----KGC------TKMVVVNRS----EER---VA 304 (519)
T ss_pred CCcCHHHHHHHHHHHhcCCCCCCCCEEEEEeCHHHHHHHHHHHHh-----CCC------CeEEEEeCC----HHH---HH
Confidence 4445555666666666664 6999999999999999988887753 364 679988875 122 22
Q ss_pred hhchhhhc---ccCCCCCHHHHHhccCCcEEEeecCCC-CCCCHHHHHHHHcCC---CCc-EEEecCCCCCCCCCCHHHH
Q 007802 386 HFKKPWAH---EHAPIKSLLDAVKAIKPTMLMGTSGVG-KTFTKEVVEAMASFN---EKP-VIFALSNPTSQSECTAEEA 457 (589)
Q Consensus 386 ~~k~~fa~---~~~~~~~L~e~V~~vkPtvLIG~S~~~-g~Fteevv~~Ma~~~---erP-IIFaLSNPt~~~E~t~eda 457 (589)
.....|-. ......++.+++.. .|++|.+++.+ .+|+++.++.|-+.. .+| +|+=||.|-.--.+-.
T Consensus 305 ~La~~~~g~~i~~~~~~dl~~al~~--aDVVIsAT~s~~pvI~~e~l~~~~~~~~~~~~~~~~IDLAvPRdIdp~v~--- 379 (519)
T PLN00203 305 ALREEFPDVEIIYKPLDEMLACAAE--ADVVFTSTSSETPLFLKEHVEALPPASDTVGGKRLFVDISVPRNVGACVS--- 379 (519)
T ss_pred HHHHHhCCCceEeecHhhHHHHHhc--CCEEEEccCCCCCeeCHHHHHHhhhcccccCCCeEEEEeCCCCCCccccc---
Confidence 22222210 01123467788875 89999876444 489999999985321 244 5677999963111110
Q ss_pred hccccCcEEEeeCCCCCcceeCCeeeCCCCccccccchhhhHHHHHhCCcccCHHHHHHHHHHHHhccC--cccCCCCCc
Q 007802 458 YTWSKGQAIFASGSPFDPVEYNGKVFVPGQGNNAYIFPGLGLGLIISGAIRVRDEMLLAASEALAAQVT--QEHFDKGLI 535 (589)
Q Consensus 458 ~~wT~GraifAsGSPf~pv~~~G~~~~p~Q~NN~~iFPGiglG~~~~~a~~Itd~m~~aAA~aLA~~v~--~~~l~~g~l 535 (589)
...|+++|===-|-.+..+...-..+-...|-.-+...+. .+.+..-.+
T Consensus 380 -----------------------------~l~~v~lydiDdL~~i~~~n~~~R~~~~~~Ae~II~ee~~~F~~w~~~~~~ 430 (519)
T PLN00203 380 -----------------------------ELESARVYNVDDLKEVVAANKEDRLRKAMEAQTIIREESKNFEAWRDSLET 430 (519)
T ss_pred -----------------------------cCCCCeEEEeccHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 1112222211122223332222222212221111111111 113345678
Q ss_pred cCCCCCchhhHHHHHHHHHHHHHHc
Q 007802 536 YPPFTNIRKISAHIAAKVAAKAYDL 560 (589)
Q Consensus 536 ~P~l~~ireVs~~VA~aVa~~A~~~ 560 (589)
-|-+.++|+-...|..+=.+.+.+.
T Consensus 431 ~p~I~~lr~~~~~i~~~Eler~~~k 455 (519)
T PLN00203 431 VPTIKKLRSYAERIRAAELEKCLSK 455 (519)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999888888765
No 37
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=95.86 E-value=0.075 Score=55.67 Aligned_cols=128 Identities=22% Similarity=0.289 Sum_probs=82.6
Q ss_pred HHHHHHHHHHHHhCCCCCCceEEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEcccCcccCCcccCCchhchh
Q 007802 311 VVLAGILSALKLVGGTLADQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLIVSSRKESLQHFKKP 390 (589)
Q Consensus 311 V~lAgll~Alr~~g~~l~d~riv~~GAGsAg~GiA~ll~~~~~~~~G~s~eeA~~~i~~vD~~GLv~~~r~~~l~~~k~~ 390 (589)
++-+++..+++..+..+.+.|++|+|+|.+|..++..+.. .| -+++++|++- . +..
T Consensus 134 ~aegav~~a~~~~~~~l~g~kvlViG~G~iG~~~a~~L~~-----~G-------a~V~v~~r~~---~---------~~~ 189 (296)
T PRK08306 134 TAEGAIMMAIEHTPITIHGSNVLVLGFGRTGMTLARTLKA-----LG-------ANVTVGARKS---A---------HLA 189 (296)
T ss_pred HHHHHHHHHHHhCCCCCCCCEEEEECCcHHHHHHHHHHHH-----CC-------CEEEEEECCH---H---------HHH
Confidence 3334566677778889999999999999999999888754 25 2688888861 1 111
Q ss_pred hhcc----cCCCCCHHHHHhccCCcEEEeecCCCCCCCHHHHHHHHcCCCCcEEEecCCCCCCCCCCHHHHhccccC-cE
Q 007802 391 WAHE----HAPIKSLLDAVKAIKPTMLMGTSGVGKTFTKEVVEAMASFNEKPVIFALSNPTSQSECTAEEAYTWSKG-QA 465 (589)
Q Consensus 391 fa~~----~~~~~~L~e~V~~vkPtvLIG~S~~~g~Fteevv~~Ma~~~erPIIFaLSNPt~~~E~t~eda~~wT~G-ra 465 (589)
.++. .....+|.+.++. .|++|-++. ...++++.++.|. +.-+|+=++... -.|..+.|.+ .| ++
T Consensus 190 ~~~~~G~~~~~~~~l~~~l~~--aDiVI~t~p-~~~i~~~~l~~~~---~g~vIIDla~~p--ggtd~~~a~~--~Gv~~ 259 (296)
T PRK08306 190 RITEMGLSPFHLSELAEEVGK--IDIIFNTIP-ALVLTKEVLSKMP---PEALIIDLASKP--GGTDFEYAEK--RGIKA 259 (296)
T ss_pred HHHHcCCeeecHHHHHHHhCC--CCEEEECCC-hhhhhHHHHHcCC---CCcEEEEEccCC--CCcCeeehhh--CCeEE
Confidence 1111 0112467788874 999998653 4578999998886 466777565433 2344443332 34 45
Q ss_pred EEeeCCC
Q 007802 466 IFASGSP 472 (589)
Q Consensus 466 ifAsGSP 472 (589)
+.++|-|
T Consensus 260 ~~~~~lp 266 (296)
T PRK08306 260 LLAPGLP 266 (296)
T ss_pred EEECCCC
Confidence 5567654
No 38
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=95.85 E-value=0.15 Score=52.58 Aligned_cols=198 Identities=17% Similarity=0.157 Sum_probs=103.2
Q ss_pred ceEEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEcccCcccCCcccCCchhchhhhcc------------cC-
Q 007802 330 QTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLIVSSRKESLQHFKKPWAHE------------HA- 396 (589)
Q Consensus 330 ~riv~~GAGsAg~GiA~ll~~~~~~~~G~s~eeA~~~i~~vD~~GLv~~~r~~~l~~~k~~fa~~------------~~- 396 (589)
.||.|+|+|..|.+||..+... | .+++++|.+---.+.-.+.+......+... ..
T Consensus 4 ~kIaViGaG~mG~~iA~~la~~-----G-------~~V~l~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 71 (287)
T PRK08293 4 KNVTVAGAGVLGSQIAFQTAFH-----G-------FDVTIYDISDEALEKAKERIAKLADRYVRDLEATKEAPAEAALNR 71 (287)
T ss_pred cEEEEECCCHHHHHHHHHHHhc-----C-------CeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhHHHHHcC
Confidence 5899999999999999887542 5 368999875110000000000000111100 01
Q ss_pred --CCCCHHHHHhccCCcEEEeecCCCCCCCHHHHHHHHcCCCCcEEEecCCCCCCCCCCHHHHhccccCcEEEeeCCCCC
Q 007802 397 --PIKSLLDAVKAIKPTMLMGTSGVGKTFTKEVVEAMASFNEKPVIFALSNPTSQSECTAEEAYTWSKGQAIFASGSPFD 474 (589)
Q Consensus 397 --~~~~L~e~V~~vkPtvLIG~S~~~g~Fteevv~~Ma~~~erPIIFaLSNPt~~~E~t~eda~~wT~GraifAsGSPf~ 474 (589)
...++.++++. .|++|=+-...-.+.+++++...+.+....|++ ||.+++ .+.++.+.+.-.-=|....||.
T Consensus 72 i~~~~d~~~a~~~--aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~-sntSt~---~~~~~~~~~~~~~r~vg~Hf~~ 145 (287)
T PRK08293 72 ITLTTDLAEAVKD--ADLVIEAVPEDPEIKGDFYEELAKVAPEKTIFA-TNSSTL---LPSQFAEATGRPEKFLALHFAN 145 (287)
T ss_pred eEEeCCHHHHhcC--CCEEEEeccCCHHHHHHHHHHHHhhCCCCCEEE-ECcccC---CHHHHHhhcCCcccEEEEcCCC
Confidence 12578888875 788875433222367788888877766656663 565554 4444444332111233456777
Q ss_pred cceeCCeeeCCCCccccccchhhhHHHHHhCCcccCHHHHHHHHHHHHhccCcccCCCCC-cc-CCCCCchhhHHHHHHH
Q 007802 475 PVEYNGKVFVPGQGNNAYIFPGLGLGLIISGAIRVRDEMLLAASEALAAQVTQEHFDKGL-IY-PPFTNIRKISAHIAAK 552 (589)
Q Consensus 475 pv~~~G~~~~p~Q~NN~~iFPGiglG~~~~~a~~Itd~m~~aAA~aLA~~v~~~~l~~g~-l~-P~l~~ireVs~~VA~a 552 (589)
|+.... .. .+.....-+++.+. .+..+...+- +.. ++ |..- --|..++-.+
T Consensus 146 p~~~~~---------lv----------evv~~~~t~~~~~~-~~~~~~~~~G-----k~pv~v~~d~p--gfi~nRi~~~ 198 (287)
T PRK08293 146 EIWKNN---------TA----------EIMGHPGTDPEVFD-TVVAFAKAIG-----MVPIVLKKEQP--GYILNSLLVP 198 (287)
T ss_pred CCCcCC---------eE----------EEeCCCCCCHHHHH-HHHHHHHHcC-----CeEEEecCCCC--CHhHHHHHHH
Confidence 764221 11 12222333666544 4455544432 222 22 2222 3566666666
Q ss_pred HHHHHH---HcCCCCCCCCchhHHHHH
Q 007802 553 VAAKAY---DLGLASRLPRPKDLVSYA 576 (589)
Q Consensus 553 Va~~A~---~~GvA~~~~~p~dl~~~i 576 (589)
+...|. ++|+|+ |+|+....
T Consensus 199 ~~~ea~~l~~~g~a~----~~~iD~a~ 221 (287)
T PRK08293 199 FLSAALALWAKGVAD----PETIDKTW 221 (287)
T ss_pred HHHHHHHHHHcCCCC----HHHHHHHH
Confidence 666654 589885 45555544
No 39
>PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=95.67 E-value=0.071 Score=55.83 Aligned_cols=108 Identities=19% Similarity=0.302 Sum_probs=80.1
Q ss_pred chHHHHHHHHHHHHHHhCCCCCCceEEEeCcCh-HHHHHHHHHHHHHHhccCCCHHhhcCeEEEEcccCcccCCcccCCc
Q 007802 307 GTASVVLAGILSALKLVGGTLADQTFLFLGAGE-AGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLIVSSRKESLQ 385 (589)
Q Consensus 307 GTaaV~lAgll~Alr~~g~~l~d~riv~~GAGs-Ag~GiA~ll~~~~~~~~G~s~eeA~~~i~~vD~~GLv~~~r~~~l~ 385 (589)
+.+-+|-.|++..++..+.+++++++|++|+|- +|..+|.+|.. .| | .+.+++++
T Consensus 137 ~~~p~T~~gii~~L~~~~i~l~Gk~vvViG~gg~vGkpia~~L~~-----~g-----a--tVtv~~~~------------ 192 (283)
T PRK14192 137 AYGSATPAGIMRLLKAYNIELAGKHAVVVGRSAILGKPMAMMLLN-----AN-----A--TVTICHSR------------ 192 (283)
T ss_pred cccCCcHHHHHHHHHHcCCCCCCCEEEEECCcHHHHHHHHHHHHh-----CC-----C--EEEEEeCC------------
Confidence 457777799999999999999999999999997 99999998854 25 2 58888762
Q ss_pred hhchhhhcccCCCCCHHHHHhccCCcEEEeecCCCCCCCHHHHHHHHcCCCCcEEEec-CCCC--CC-CCCCHHHHh
Q 007802 386 HFKKPWAHEHAPIKSLLDAVKAIKPTMLMGTSGVGKTFTKEVVEAMASFNEKPVIFAL-SNPT--SQ-SECTAEEAY 458 (589)
Q Consensus 386 ~~k~~fa~~~~~~~~L~e~V~~vkPtvLIG~S~~~g~Fteevv~~Ma~~~erPIIFaL-SNPt--~~-~E~t~eda~ 458 (589)
.++|.+.++ +.|++|-+.+.++.|+.+.++ +.-+|+=. .||. .. -++.+|++.
T Consensus 193 ------------t~~L~~~~~--~aDIvI~AtG~~~~v~~~~lk------~gavViDvg~n~~~~~~~GDvd~~~~~ 249 (283)
T PRK14192 193 ------------TQNLPELVK--QADIIVGAVGKPELIKKDWIK------QGAVVVDAGFHPRDGGGVGDIELQGIE 249 (283)
T ss_pred ------------chhHHHHhc--cCCEEEEccCCCCcCCHHHcC------CCCEEEEEEEeecCCCCcccccHHHhh
Confidence 124666676 499999999989888988764 44566544 3663 11 255555554
No 40
>PRK12549 shikimate 5-dehydrogenase; Reviewed
Probab=95.46 E-value=0.047 Score=56.84 Aligned_cols=90 Identities=18% Similarity=0.238 Sum_probs=57.8
Q ss_pred HHHHHHHHHhCCCCCCceEEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEcccCcccCCcccCCchh-chhhh
Q 007802 314 AGILSALKLVGGTLADQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLIVSSRKESLQHF-KKPWA 392 (589)
Q Consensus 314 Agll~Alr~~g~~l~d~riv~~GAGsAg~GiA~ll~~~~~~~~G~s~eeA~~~i~~vD~~GLv~~~r~~~l~~~-k~~fa 392 (589)
.|++.+++..+..+++++++++|||.||..++..|.. .|+ ++|+++|+. ..|.+.+.+. +..+.
T Consensus 112 ~G~~~~l~~~~~~~~~k~vlIlGaGGaaraia~aL~~-----~G~------~~I~I~nR~----~~ka~~la~~l~~~~~ 176 (284)
T PRK12549 112 SGFAESFRRGLPDASLERVVQLGAGGAGAAVAHALLT-----LGV------ERLTIFDVD----PARAAALADELNARFP 176 (284)
T ss_pred HHHHHHHHhhccCccCCEEEEECCcHHHHHHHHHHHH-----cCC------CEEEEECCC----HHHHHHHHHHHHhhCC
Confidence 4677788766667889999999999999999888864 375 679999985 2222222211 11111
Q ss_pred c-ccCCCCCHHHHHhccCCcEEEeecCCC
Q 007802 393 H-EHAPIKSLLDAVKAIKPTMLMGTSGVG 420 (589)
Q Consensus 393 ~-~~~~~~~L~e~V~~vkPtvLIG~S~~~ 420 (589)
. ......++.+.++. +|++|.++..|
T Consensus 177 ~~~~~~~~~~~~~~~~--aDiVInaTp~G 203 (284)
T PRK12549 177 AARATAGSDLAAALAA--ADGLVHATPTG 203 (284)
T ss_pred CeEEEeccchHhhhCC--CCEEEECCcCC
Confidence 0 00112345556654 89999887654
No 41
>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase. Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann
Probab=95.45 E-value=0.053 Score=49.87 Aligned_cols=108 Identities=22% Similarity=0.354 Sum_probs=67.3
Q ss_pred HHHHHHHHHhCCCCCCceEEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEcccCcccCCcccCCchhchhhhc
Q 007802 314 AGILSALKLVGGTLADQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLIVSSRKESLQHFKKPWAH 393 (589)
Q Consensus 314 Agll~Alr~~g~~l~d~riv~~GAGsAg~GiA~ll~~~~~~~~G~s~eeA~~~i~~vD~~GLv~~~r~~~l~~~k~~fa~ 393 (589)
.|+.+|++..+.++++.+|+|+|+|..|..+++.+.+ .|. ++++++|++ .++ .....+.+..
T Consensus 4 ~g~~~a~~~~~~~~~~~~i~iiG~G~~g~~~a~~l~~-----~g~------~~v~v~~r~----~~~---~~~~~~~~~~ 65 (155)
T cd01065 4 LGFVRALEEAGIELKGKKVLILGAGGAARAVAYALAE-----LGA------AKIVIVNRT----LEK---AKALAERFGE 65 (155)
T ss_pred HHHHHHHHhhCCCCCCCEEEEECCcHHHHHHHHHHHH-----CCC------CEEEEEcCC----HHH---HHHHHHHHhh
Confidence 5899999998888999999999999888888887754 231 578888874 111 2222222221
Q ss_pred c--cCCCCCHHHHHhccCCcEEEeecCCCC------CCCHHHHHHHHcCCCCcEEEecC-CCC
Q 007802 394 E--HAPIKSLLDAVKAIKPTMLMGTSGVGK------TFTKEVVEAMASFNEKPVIFALS-NPT 447 (589)
Q Consensus 394 ~--~~~~~~L~e~V~~vkPtvLIG~S~~~g------~Fteevv~~Ma~~~erPIIFaLS-NPt 447 (589)
. .....++.++++. +|++|-+...+- .|.+.. + .+..+|+=+| +|.
T Consensus 66 ~~~~~~~~~~~~~~~~--~Dvvi~~~~~~~~~~~~~~~~~~~---~---~~~~~v~D~~~~~~ 120 (155)
T cd01065 66 LGIAIAYLDLEELLAE--ADLIINTTPVGMKPGDELPLPPSL---L---KPGGVVYDVVYNPL 120 (155)
T ss_pred cccceeecchhhcccc--CCEEEeCcCCCCCCCCCCCCCHHH---c---CCCCEEEEcCcCCC
Confidence 1 0123466676654 899997765432 133222 2 3566777775 454
No 42
>PRK13940 glutamyl-tRNA reductase; Provisional
Probab=95.44 E-value=0.052 Score=59.63 Aligned_cols=192 Identities=14% Similarity=0.191 Sum_probs=105.2
Q ss_pred HHHHHHHHHHHHHhCCCCCCceEEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEcccCcccCCcccCCchhch
Q 007802 310 SVVLAGILSALKLVGGTLADQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLIVSSRKESLQHFKK 389 (589)
Q Consensus 310 aV~lAgll~Alr~~g~~l~d~riv~~GAGsAg~GiA~ll~~~~~~~~G~s~eeA~~~i~~vD~~GLv~~~r~~~l~~~k~ 389 (589)
+|+-+|+=-|.+.- .++++.|++++|||.+|-.+|..|.. .|. ++|+++++. .+|...| ..
T Consensus 163 Sv~~~Av~la~~~~-~~l~~kkvlviGaG~~a~~va~~L~~-----~g~------~~I~V~nRt----~~ra~~L---a~ 223 (414)
T PRK13940 163 SVAFSAITLAKRQL-DNISSKNVLIIGAGQTGELLFRHVTA-----LAP------KQIMLANRT----IEKAQKI---TS 223 (414)
T ss_pred CHHHHHHHHHHHHh-cCccCCEEEEEcCcHHHHHHHHHHHH-----cCC------CEEEEECCC----HHHHHHH---HH
Confidence 44444444444443 35889999999999999888887754 365 679988874 2221112 12
Q ss_pred hhh-cccCCCCCHHHHHhccCCcEEEeecCCCC-CCCHHHHHHHHcCCCCcE-EEecCCCCCCCCCCHHHHhccccCcEE
Q 007802 390 PWA-HEHAPIKSLLDAVKAIKPTMLMGTSGVGK-TFTKEVVEAMASFNEKPV-IFALSNPTSQSECTAEEAYTWSKGQAI 466 (589)
Q Consensus 390 ~fa-~~~~~~~~L~e~V~~vkPtvLIG~S~~~g-~Fteevv~~Ma~~~erPI-IFaLSNPt~~~E~t~eda~~wT~Grai 466 (589)
.|. ....+..+|.+.+.. .|++|-+++.+. ++|.+.++ .+|+ |+=|+.|-.-- | .
T Consensus 224 ~~~~~~~~~~~~l~~~l~~--aDiVI~aT~a~~~vi~~~~~~------~~~~~~iDLavPRdid---p--~--------- 281 (414)
T PRK13940 224 AFRNASAHYLSELPQLIKK--ADIIIAAVNVLEYIVTCKYVG------DKPRVFIDISIPQALD---P--K--------- 281 (414)
T ss_pred HhcCCeEecHHHHHHHhcc--CCEEEECcCCCCeeECHHHhC------CCCeEEEEeCCCCCCC---c--c---------
Confidence 221 011223456777775 999999887664 67866542 4565 46799997211 1 0
Q ss_pred EeeCCCCCcceeCCeeeCCCCccccccchhhhHHHHHhCCcccCHHHHHHHHHHHHhccC--cccCCCCCccCCCCCchh
Q 007802 467 FASGSPFDPVEYNGKVFVPGQGNNAYIFPGLGLGLIISGAIRVRDEMLLAASEALAAQVT--QEHFDKGLIYPPFTNIRK 544 (589)
Q Consensus 467 fAsGSPf~pv~~~G~~~~p~Q~NN~~iFPGiglG~~~~~a~~Itd~m~~aAA~aLA~~v~--~~~l~~g~l~P~l~~ire 544 (589)
.+...|+++|===-|-.+..+......+....|-.-+...+. .+.+....+-|-+.++|+
T Consensus 282 ------------------v~~l~~v~l~~iDdl~~i~~~n~~~R~~~~~~a~~iI~e~~~~f~~w~~~~~~~p~I~~lr~ 343 (414)
T PRK13940 282 ------------------LGELEQNVYYCVDDINAVIEDNKDKRKYESSKAQKIIVKSLEEYLEKEKAIISNSAIKELFQ 343 (414)
T ss_pred ------------------ccCcCCeEEEeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHH
Confidence 011222332221122222222111112212222111111111 113445678999999999
Q ss_pred hHHHHHHHHHHHHHHc
Q 007802 545 ISAHIAAKVAAKAYDL 560 (589)
Q Consensus 545 Vs~~VA~aVa~~A~~~ 560 (589)
-...|..+-.+.+.+.
T Consensus 344 ~~~~i~~~el~r~~~~ 359 (414)
T PRK13940 344 KADGLVDLSLEKSLAK 359 (414)
T ss_pred HHHHHHHHHHHHHHhh
Confidence 9888888888888755
No 43
>PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=95.43 E-value=0.095 Score=55.16 Aligned_cols=96 Identities=21% Similarity=0.338 Sum_probs=76.4
Q ss_pred chHHHHHHHHHHHHHHhCCCCCCceEEEeCcCh-HHHHHHHHHHHHHHhccCCCHHhhcCeEEEEcccCcccCCcccCCc
Q 007802 307 GTASVVLAGILSALKLVGGTLADQTFLFLGAGE-AGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLIVSSRKESLQ 385 (589)
Q Consensus 307 GTaaV~lAgll~Alr~~g~~l~d~riv~~GAGs-Ag~GiA~ll~~~~~~~~G~s~eeA~~~i~~vD~~GLv~~~r~~~l~ 385 (589)
+-.-+|-+|++.-++-.+.+|++.+++++|+|. .|..+|.+|.. .| ..+++++++.
T Consensus 136 ~~~PcTp~ai~~ll~~~~i~l~Gk~vvVIGrs~~VG~pla~lL~~-----~g-------atVtv~~s~t----------- 192 (286)
T PRK14175 136 TFVPCTPLGIMEILKHADIDLEGKNAVVIGRSHIVGQPVSKLLLQ-----KN-------ASVTILHSRS----------- 192 (286)
T ss_pred CCCCCcHHHHHHHHHHcCCCCCCCEEEEECCCchhHHHHHHHHHH-----CC-------CeEEEEeCCc-----------
Confidence 456778899999999999999999999999988 99999998864 24 3577777641
Q ss_pred hhchhhhcccCCCCCHHHHHhccCCcEEEeecCCCCCCCHHHHHHHHcCCCCcEEEecCCC
Q 007802 386 HFKKPWAHEHAPIKSLLDAVKAIKPTMLMGTSGVGKTFTKEVVEAMASFNEKPVIFALSNP 446 (589)
Q Consensus 386 ~~k~~fa~~~~~~~~L~e~V~~vkPtvLIG~S~~~g~Fteevv~~Ma~~~erPIIFaLSNP 446 (589)
.+|.+.+++ .|++|...+.++.|+++.++ +.-+|+=++.|
T Consensus 193 -------------~~l~~~~~~--ADIVIsAvg~p~~i~~~~vk------~gavVIDvGi~ 232 (286)
T PRK14175 193 -------------KDMASYLKD--ADVIVSAVGKPGLVTKDVVK------EGAVIIDVGNT 232 (286)
T ss_pred -------------hhHHHHHhh--CCEEEECCCCCcccCHHHcC------CCcEEEEcCCC
Confidence 257788886 99999999999999998764 34566655543
No 44
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=95.36 E-value=0.12 Score=51.14 Aligned_cols=122 Identities=16% Similarity=0.215 Sum_probs=81.8
Q ss_pred hHHHHHHHHHHHHHHh--CCCCCCceEEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEcccCcccCCcccCCc
Q 007802 308 TASVVLAGILSALKLV--GGTLADQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLIVSSRKESLQ 385 (589)
Q Consensus 308 TaaV~lAgll~Alr~~--g~~l~d~riv~~GAGsAg~GiA~ll~~~~~~~~G~s~eeA~~~i~~vD~~GLv~~~r~~~l~ 385 (589)
||-=+..++-.+++.. +.+|++.+|+|.|.|..|..+|+.|.+. | -+++++|++. +.+.
T Consensus 5 Tg~Gv~~~~~~~~~~~~~~~~l~gk~v~I~G~G~vG~~~A~~L~~~-----G-------~~Vvv~D~~~-------~~~~ 65 (200)
T cd01075 5 TAYGVFLGMKAAAEHLLGTDSLEGKTVAVQGLGKVGYKLAEHLLEE-----G-------AKLIVADINE-------EAVA 65 (200)
T ss_pred hHHHHHHHHHHHHHHhcCCCCCCCCEEEEECCCHHHHHHHHHHHHC-----C-------CEEEEEcCCH-------HHHH
Confidence 5555666677777775 8899999999999999999999988653 6 3588888651 1233
Q ss_pred hhchhhhcccCCCCCHHHHHhccCCcEEEeecCCCCCCCHHHHHHHHcCCCCcEEEecCC-CCCCCCCCHHHHhc
Q 007802 386 HFKKPWAHEHAPIKSLLDAVKAIKPTMLMGTSGVGKTFTKEVVEAMASFNEKPVIFALSN-PTSQSECTAEEAYT 459 (589)
Q Consensus 386 ~~k~~fa~~~~~~~~L~e~V~~vkPtvLIG~S~~~g~Fteevv~~Ma~~~erPIIFaLSN-Pt~~~E~t~eda~~ 459 (589)
.++..|.- ..-+..+... .+.|+++=++. ++..|++.++.| +-++|..-+| |+.. ..+++.++
T Consensus 66 ~~~~~~g~---~~v~~~~l~~-~~~Dv~vp~A~-~~~I~~~~~~~l----~~~~v~~~AN~~~~~--~~~~~~L~ 129 (200)
T cd01075 66 RAAELFGA---TVVAPEEIYS-VDADVFAPCAL-GGVINDDTIPQL----KAKAIAGAANNQLAD--PRHGQMLH 129 (200)
T ss_pred HHHHHcCC---EEEcchhhcc-ccCCEEEeccc-ccccCHHHHHHc----CCCEEEECCcCccCC--HhHHHHHH
Confidence 33333311 1112233333 37999995555 679999999999 4679999888 6632 33555554
No 45
>PLN00106 malate dehydrogenase
Probab=95.28 E-value=0.11 Score=55.40 Aligned_cols=118 Identities=24% Similarity=0.320 Sum_probs=80.7
Q ss_pred HHHHHHHHHhCCCCCCceEEEeCc-ChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEcccCcccCCcccCCchhchhhh
Q 007802 314 AGILSALKLVGGTLADQTFLFLGA-GEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLIVSSRKESLQHFKKPWA 392 (589)
Q Consensus 314 Agll~Alr~~g~~l~d~riv~~GA-GsAg~GiA~ll~~~~~~~~G~s~eeA~~~i~~vD~~GLv~~~r~~~l~~~k~~fa 392 (589)
|.-|.|+|..|..-. .||+|+|| |..|.-+|..|.. .|+ ...+.|+|.+- ..+-.-+|.+-.. +.
T Consensus 4 ~~~~~~~~~~~~~~~-~KV~IiGaaG~VG~~~a~~l~~-----~~~-----~~el~L~Di~~--~~g~a~Dl~~~~~-~~ 69 (323)
T PLN00106 4 ASSLRACRAKGGAPG-FKVAVLGAAGGIGQPLSLLMKM-----NPL-----VSELHLYDIAN--TPGVAADVSHINT-PA 69 (323)
T ss_pred hhhhhccccccCCCC-CEEEEECCCCHHHHHHHHHHHh-----CCC-----CCEEEEEecCC--CCeeEchhhhCCc-Cc
Confidence 345678888887655 59999999 9999999987754 244 25799999865 1111112322211 11
Q ss_pred ccc--CCCCCHHHHHhccCCcEEEeecCCCCC--------------CCHHHHHHHHcCCCCcEEEecCCCC
Q 007802 393 HEH--APIKSLLDAVKAIKPTMLMGTSGVGKT--------------FTKEVVEAMASFNEKPVIFALSNPT 447 (589)
Q Consensus 393 ~~~--~~~~~L~e~V~~vkPtvLIG~S~~~g~--------------Fteevv~~Ma~~~erPIIFaLSNPt 447 (589)
+-. ...+++.++++. .|++|=+.+.+.. ..+++++.+.+++.+.||+.-|||.
T Consensus 70 ~i~~~~~~~d~~~~l~~--aDiVVitAG~~~~~g~~R~dll~~N~~i~~~i~~~i~~~~p~aivivvSNPv 138 (323)
T PLN00106 70 QVRGFLGDDQLGDALKG--ADLVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEAVAKHCPNALVNIISNPV 138 (323)
T ss_pred eEEEEeCCCCHHHHcCC--CCEEEEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEeCCCc
Confidence 211 133567888887 8888877665422 3467888999999999999999999
No 46
>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3.3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....
Probab=95.25 E-value=0.33 Score=47.26 Aligned_cols=121 Identities=17% Similarity=0.290 Sum_probs=74.7
Q ss_pred CchHHHHHHHHHHHHHHhCCCCCCceEEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEcccCcccCCcccCCc
Q 007802 306 QGTASVVLAGILSALKLVGGTLADQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLIVSSRKESLQ 385 (589)
Q Consensus 306 QGTaaV~lAgll~Alr~~g~~l~d~riv~~GAGsAg~GiA~ll~~~~~~~~G~s~eeA~~~i~~vD~~GLv~~~r~~~l~ 385 (589)
.||+--++-|++ |.++..|...++|++|-|--|-|+|+.+... | -++.++|.+=+ .-+.
T Consensus 3 yG~g~S~~d~i~---r~t~~~l~Gk~vvV~GYG~vG~g~A~~lr~~-----G-------a~V~V~e~DPi------~alq 61 (162)
T PF00670_consen 3 YGTGQSLVDGIM---RATNLMLAGKRVVVIGYGKVGKGIARALRGL-----G-------ARVTVTEIDPI------RALQ 61 (162)
T ss_dssp HHHHHHHHHHHH---HHH-S--TTSEEEEE--SHHHHHHHHHHHHT-----T--------EEEEE-SSHH------HHHH
T ss_pred cccchhHHHHHH---hcCceeeCCCEEEEeCCCcccHHHHHHHhhC-----C-------CEEEEEECChH------HHHH
Confidence 366666666665 5788999999999999999999999988552 5 35776665310 0122
Q ss_pred hhchhhhcccCCCCCHHHHHhccCCcEEEeecCCCCCCCHHHHHHHHcCCCCcEEEecCCCCCCCCCCHHHHhc
Q 007802 386 HFKKPWAHEHAPIKSLLDAVKAIKPTMLMGTSGVGKTFTKEVVEAMASFNEKPVIFALSNPTSQSECTAEEAYT 459 (589)
Q Consensus 386 ~~k~~fa~~~~~~~~L~e~V~~vkPtvLIG~S~~~g~Fteevv~~Ma~~~erPIIFaLSNPt~~~E~t~eda~~ 459 (589)
.+. +.-+..++.|+++. +|++|-+++...+.+.|.++.|. +.-|+.-..- ..-|+.-+..-+
T Consensus 62 A~~-----dGf~v~~~~~a~~~--adi~vtaTG~~~vi~~e~~~~mk---dgail~n~Gh--~d~Eid~~~L~~ 123 (162)
T PF00670_consen 62 AAM-----DGFEVMTLEEALRD--ADIFVTATGNKDVITGEHFRQMK---DGAILANAGH--FDVEIDVDALEA 123 (162)
T ss_dssp HHH-----TT-EEE-HHHHTTT---SEEEE-SSSSSSB-HHHHHHS----TTEEEEESSS--STTSBTHHHHHT
T ss_pred hhh-----cCcEecCHHHHHhh--CCEEEECCCCccccCHHHHHHhc---CCeEEeccCc--CceeEeeccccc
Confidence 121 11223579999985 99999999988899999999995 4556654443 236777766544
No 47
>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase. Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo
Probab=95.19 E-value=0.11 Score=50.15 Aligned_cols=54 Identities=33% Similarity=0.438 Sum_probs=43.6
Q ss_pred hHHHHHHHHHHHHHHhCCCCCCceEEEeCc-ChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEccc
Q 007802 308 TASVVLAGILSALKLVGGTLADQTFLFLGA-GEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSK 373 (589)
Q Consensus 308 TaaV~lAgll~Alr~~g~~l~d~riv~~GA-GsAg~GiA~ll~~~~~~~~G~s~eeA~~~i~~vD~~ 373 (589)
||+.+++.+..+++..|.++++.+++++|+ |..|..++..+.. .| .++++++++
T Consensus 7 ta~aav~~~~~~l~~~~~~l~~~~vlVlGgtG~iG~~~a~~l~~-----~g-------~~V~l~~R~ 61 (194)
T cd01078 7 TAAAAVAAAGKALELMGKDLKGKTAVVLGGTGPVGQRAAVLLAR-----EG-------ARVVLVGRD 61 (194)
T ss_pred HHHHHHHHHHHHHHHhCcCCCCCEEEEECCCCHHHHHHHHHHHH-----CC-------CEEEEEcCC
Confidence 677788888888888899999999999997 9988888887754 24 468888765
No 48
>PRK00676 hemA glutamyl-tRNA reductase; Validated
Probab=94.85 E-value=0.14 Score=55.03 Aligned_cols=90 Identities=12% Similarity=0.240 Sum_probs=58.1
Q ss_pred CCCCCceEEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEcccCcccCCcccCCchhchhhhcccCCCCCHH-H
Q 007802 325 GTLADQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLIVSSRKESLQHFKKPWAHEHAPIKSLL-D 403 (589)
Q Consensus 325 ~~l~d~riv~~GAGsAg~GiA~ll~~~~~~~~G~s~eeA~~~i~~vD~~GLv~~~r~~~l~~~k~~fa~~~~~~~~L~-e 403 (589)
.+|++.+++++|||..|--+|+.|.. .|. ++|+++.+.-- + .+|.. +. +
T Consensus 170 ~~l~~k~vLvIGaGem~~l~a~~L~~-----~g~------~~i~v~nRt~~----~--------~~~~~-------~~~~ 219 (338)
T PRK00676 170 QKSKKASLLFIGYSEINRKVAYYLQR-----QGY------SRITFCSRQQL----T--------LPYRT-------VVRE 219 (338)
T ss_pred CCccCCEEEEEcccHHHHHHHHHHHH-----cCC------CEEEEEcCCcc----c--------cchhh-------hhhh
Confidence 56999999999999988777776654 365 67998888631 1 22221 10 1
Q ss_pred HHh-ccCCcEEEee----cCCCCCCCHHHHHHHHcCCCCcEEEecCCCCC
Q 007802 404 AVK-AIKPTMLMGT----SGVGKTFTKEVVEAMASFNEKPVIFALSNPTS 448 (589)
Q Consensus 404 ~V~-~vkPtvLIG~----S~~~g~Fteevv~~Ma~~~erPIIFaLSNPt~ 448 (589)
++. ..+.|++|-. ++.....+.+.++.. .+| ++|=||+|-.
T Consensus 220 ~~~~~~~~DvVIs~t~~Tas~~p~i~~~~~~~~---~~r-~~iDLAvPRd 265 (338)
T PRK00676 220 ELSFQDPYDVIFFGSSESAYAFPHLSWESLADI---PDR-IVFDFNVPRT 265 (338)
T ss_pred hhhcccCCCEEEEcCCcCCCCCceeeHHHHhhc---cCc-EEEEecCCCC
Confidence 111 1368999964 333345677665532 224 9999999984
No 49
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=94.33 E-value=0.14 Score=55.23 Aligned_cols=95 Identities=21% Similarity=0.309 Sum_probs=63.1
Q ss_pred CCCceEEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEcccCcccCCcccCCchhchhhhcc----cCCCCCHH
Q 007802 327 LADQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLIVSSRKESLQHFKKPWAHE----HAPIKSLL 402 (589)
Q Consensus 327 l~d~riv~~GAGsAg~GiA~ll~~~~~~~~G~s~eeA~~~i~~vD~~GLv~~~r~~~l~~~k~~fa~~----~~~~~~L~ 402 (589)
+...+++|+|+|.+|.++++.+.. .|. ++.++|++ ..+ +......|... ..+...|.
T Consensus 165 l~~~~VlViGaG~vG~~aa~~a~~-----lGa-------~V~v~d~~----~~~---~~~l~~~~g~~v~~~~~~~~~l~ 225 (370)
T TIGR00518 165 VEPGDVTIIGGGVVGTNAAKMANG-----LGA-------TVTILDIN----IDR---LRQLDAEFGGRIHTRYSNAYEIE 225 (370)
T ss_pred CCCceEEEEcCCHHHHHHHHHHHH-----CCC-------eEEEEECC----HHH---HHHHHHhcCceeEeccCCHHHHH
Confidence 567889999999999999998854 252 48888874 111 11111122211 11123578
Q ss_pred HHHhccCCcEEEeecCC-----CCCCCHHHHHHHHcCCCCcEEEecCC
Q 007802 403 DAVKAIKPTMLMGTSGV-----GKTFTKEVVEAMASFNEKPVIFALSN 445 (589)
Q Consensus 403 e~V~~vkPtvLIG~S~~-----~g~Fteevv~~Ma~~~erPIIFaLSN 445 (589)
+.++. .|++|.+... +.++|++.++.|. ++.+|+-+|-
T Consensus 226 ~~l~~--aDvVI~a~~~~g~~~p~lit~~~l~~mk---~g~vIvDva~ 268 (370)
T TIGR00518 226 DAVKR--ADLLIGAVLIPGAKAPKLVSNSLVAQMK---PGAVIVDVAI 268 (370)
T ss_pred HHHcc--CCEEEEccccCCCCCCcCcCHHHHhcCC---CCCEEEEEec
Confidence 88874 8999987533 4568999999985 5678887774
No 50
>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain. It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....
Probab=94.13 E-value=0.093 Score=44.72 Aligned_cols=95 Identities=12% Similarity=0.206 Sum_probs=62.9
Q ss_pred eEEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEE-cccCcccCCcccCCchhchhhhcccCCCCCHHHHHhccC
Q 007802 331 TFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLV-DSKGLIVSSRKESLQHFKKPWAHEHAPIKSLLDAVKAIK 409 (589)
Q Consensus 331 riv~~GAGsAg~GiA~ll~~~~~~~~G~s~eeA~~~i~~v-D~~GLv~~~r~~~l~~~k~~fa~~~~~~~~L~e~V~~vk 409 (589)
||.|+|+|..|..+++.+... |. ...+|+++ +++ .+.+.+.++.|.... -..+..|+++.
T Consensus 1 kI~iIG~G~mg~al~~~l~~~-----g~----~~~~v~~~~~r~-------~~~~~~~~~~~~~~~-~~~~~~~~~~~-- 61 (96)
T PF03807_consen 1 KIGIIGAGNMGSALARGLLAS-----GI----KPHEVIIVSSRS-------PEKAAELAKEYGVQA-TADDNEEAAQE-- 61 (96)
T ss_dssp EEEEESTSHHHHHHHHHHHHT-----TS-----GGEEEEEEESS-------HHHHHHHHHHCTTEE-ESEEHHHHHHH--
T ss_pred CEEEECCCHHHHHHHHHHHHC-----CC----CceeEEeeccCc-------HHHHHHHHHhhcccc-ccCChHHhhcc--
Confidence 789999999999999888663 54 34678755 553 122333333332110 01278999995
Q ss_pred CcEEEeecCCCCCCCHHHHHHHHcCCCCcEEEecCCC
Q 007802 410 PTMLMGTSGVGKTFTKEVVEAMASFNEKPVIFALSNP 446 (589)
Q Consensus 410 PtvLIG~S~~~g~Fteevv~~Ma~~~erPIIFaLSNP 446 (589)
+|++| ++-.| ..-+++++.+....+..+|.-++||
T Consensus 62 advvi-lav~p-~~~~~v~~~i~~~~~~~~vis~~ag 96 (96)
T PF03807_consen 62 ADVVI-LAVKP-QQLPEVLSEIPHLLKGKLVISIAAG 96 (96)
T ss_dssp TSEEE-E-S-G-GGHHHHHHHHHHHHTTSEEEEESTT
T ss_pred CCEEE-EEECH-HHHHHHHHHHhhccCCCEEEEeCCC
Confidence 89888 66655 4566788888667788999988886
No 51
>TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type. This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway.
Probab=94.03 E-value=0.18 Score=52.42 Aligned_cols=102 Identities=20% Similarity=0.142 Sum_probs=62.3
Q ss_pred CCceeccCCCchHHHHHHHHHHHHHHhCC--CCCCceEEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEcccC
Q 007802 297 SHLVFNDDIQGTASVVLAGILSALKLVGG--TLADQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKG 374 (589)
Q Consensus 297 ~~~~FnDDiQGTaaV~lAgll~Alr~~g~--~l~d~riv~~GAGsAg~GiA~ll~~~~~~~~G~s~eeA~~~i~~vD~~G 374 (589)
++.=+|-|.. |++.+++-.+. ++++++++++|||.||-.|+-.|.. .|. ++|+++++.
T Consensus 99 ~l~G~NTD~~--------G~~~~l~~~~~~~~~~~k~vlvlGaGGaarai~~aL~~-----~G~------~~i~I~nRt- 158 (282)
T TIGR01809 99 IWKGDNTDWD--------GIAGALANIGKFEPLAGFRGLVIGAGGTSRAAVYALAS-----LGV------TDITVINRN- 158 (282)
T ss_pred cEEEecCCHH--------HHHHHHHhhCCccccCCceEEEEcCcHHHHHHHHHHHH-----cCC------CeEEEEeCC-
Confidence 3455677754 56777776663 6889999999999999888777654 365 689999874
Q ss_pred cccCCcccCCchhchhhhccc--CCCC---CHHHHHhccCCcEEEeecCCCCCCCHH
Q 007802 375 LIVSSRKESLQHFKKPWAHEH--APIK---SLLDAVKAIKPTMLMGTSGVGKTFTKE 426 (589)
Q Consensus 375 Lv~~~r~~~l~~~k~~fa~~~--~~~~---~L~e~V~~vkPtvLIG~S~~~g~Ftee 426 (589)
.+|...|.+ .|.... .... .+.+++. ++|++|.++..+-.++.+
T Consensus 159 ---~~ka~~La~---~~~~~~~~~~~~~~~~~~~~~~--~~DiVInaTp~g~~~~~~ 207 (282)
T TIGR01809 159 ---PDKLSRLVD---LGVQVGVITRLEGDSGGLAIEK--AAEVLVSTVPADVPADYV 207 (282)
T ss_pred ---HHHHHHHHH---HhhhcCcceeccchhhhhhccc--CCCEEEECCCCCCCCCHH
Confidence 222222322 121100 0111 2323333 589999988876444443
No 52
>PRK10792 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=93.90 E-value=0.57 Score=49.41 Aligned_cols=93 Identities=15% Similarity=0.192 Sum_probs=76.1
Q ss_pred hHHHHHHHHHHHHHHhCCCCCCceEEEeCcCh-HHHHHHHHHHHHHHhccCCCHHhhcCeEEEEcccCcccCCcccCCch
Q 007802 308 TASVVLAGILSALKLVGGTLADQTFLFLGAGE-AGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLIVSSRKESLQH 386 (589)
Q Consensus 308 TaaV~lAgll~Alr~~g~~l~d~riv~~GAGs-Ag~GiA~ll~~~~~~~~G~s~eeA~~~i~~vD~~GLv~~~r~~~l~~ 386 (589)
-.-+|-+|++..++-.+.+|++.+++++|-|. .|.-+|.+|.. .| ..+.+|+++
T Consensus 138 ~~PcTp~av~~ll~~~~i~l~Gk~vvViGrs~iVG~Pla~lL~~-----~~-------atVtv~hs~------------- 192 (285)
T PRK10792 138 LRPCTPRGIMTLLERYGIDTYGLNAVVVGASNIVGRPMSLELLL-----AG-------CTVTVCHRF------------- 192 (285)
T ss_pred CCCCCHHHHHHHHHHcCCCCCCCEEEEECCCcccHHHHHHHHHH-----CC-------CeEEEEECC-------------
Confidence 34778899999999999999999999999998 99999998854 24 346777664
Q ss_pred hchhhhcccCCCCCHHHHHhccCCcEEEeecCCCCCCCHHHHHHHHcCCCCcEEEecC
Q 007802 387 FKKPWAHEHAPIKSLLDAVKAIKPTMLMGTSGVGKTFTKEVVEAMASFNEKPVIFALS 444 (589)
Q Consensus 387 ~k~~fa~~~~~~~~L~e~V~~vkPtvLIG~S~~~g~Fteevv~~Ma~~~erPIIFaLS 444 (589)
.++|.+.+++ +|++|-+.+.++.|+.+.|+ +.-+|.=..
T Consensus 193 -----------T~~l~~~~~~--ADIvi~avG~p~~v~~~~vk------~gavVIDvG 231 (285)
T PRK10792 193 -----------TKNLRHHVRN--ADLLVVAVGKPGFIPGEWIK------PGAIVIDVG 231 (285)
T ss_pred -----------CCCHHHHHhh--CCEEEEcCCCcccccHHHcC------CCcEEEEcc
Confidence 1358888986 99999999999999998887 566776655
No 53
>PRK08328 hypothetical protein; Provisional
Probab=93.60 E-value=0.038 Score=55.78 Aligned_cols=120 Identities=18% Similarity=0.205 Sum_probs=75.1
Q ss_pred HHHHcCCCceeccCCCchHHHHHHHHHHHHHHhCCCCCCceEEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEE
Q 007802 291 LSKYSSSHLVFNDDIQGTASVVLAGILSALKLVGGTLADQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLV 370 (589)
Q Consensus 291 L~ryr~~~~~FnDDiQGTaaV~lAgll~Alr~~g~~l~d~riv~~GAGsAg~GiA~ll~~~~~~~~G~s~eeA~~~i~~v 370 (589)
++||..++..|..+.| .+|++.||+++|+|..|.-+|+.|+.+ |+ ++|.++
T Consensus 7 ~~ry~Rq~~~~g~~~q------------------~~L~~~~VlIiG~GGlGs~ia~~La~~-----Gv------g~i~lv 57 (231)
T PRK08328 7 LERYDRQIMIFGVEGQ------------------EKLKKAKVAVVGVGGLGSPVAYYLAAA-----GV------GRILLI 57 (231)
T ss_pred HHHHhhHHHhcCHHHH------------------HHHhCCcEEEECCCHHHHHHHHHHHHc-----CC------CEEEEE
Confidence 5788877766655322 467889999999999999999999764 76 789999
Q ss_pred cccCcccCCcccCCchhchhhhcccCCC----CCHHHHHhccCCcEEEeecCCCCCCCHHHHHHHHcCCCCcEEE-ecCC
Q 007802 371 DSKGLIVSSRKESLQHFKKPWAHEHAPI----KSLLDAVKAIKPTMLMGTSGVGKTFTKEVVEAMASFNEKPVIF-ALSN 445 (589)
Q Consensus 371 D~~GLv~~~r~~~l~~~k~~fa~~~~~~----~~L~e~V~~vkPtvLIG~S~~~g~Fteevv~~Ma~~~erPIIF-aLSN 445 (589)
|.+ .+.. .+|+.+ --|-.+.-.. ....+.++...|++.|=... +-++++-+...-+ +.-+|| +.-|
T Consensus 58 D~D-~ve~---sNL~Rq-~l~~~~dvG~~~k~~~a~~~l~~~np~v~v~~~~--~~~~~~~~~~~l~--~~D~Vid~~d~ 128 (231)
T PRK08328 58 DEQ-TPEL---SNLNRQ-ILHWEEDLGKNPKPLSAKWKLERFNSDIKIETFV--GRLSEENIDEVLK--GVDVIVDCLDN 128 (231)
T ss_pred cCC-ccCh---hhhccc-cccChhhcCchHHHHHHHHHHHHhCCCCEEEEEe--ccCCHHHHHHHHh--cCCEEEECCCC
Confidence 987 1111 234432 1111111111 12345577788998876533 3467765554432 445666 5667
Q ss_pred CCC
Q 007802 446 PTS 448 (589)
Q Consensus 446 Pt~ 448 (589)
+.+
T Consensus 129 ~~~ 131 (231)
T PRK08328 129 FET 131 (231)
T ss_pred HHH
Confidence 663
No 54
>PRK05086 malate dehydrogenase; Provisional
Probab=93.60 E-value=0.37 Score=50.94 Aligned_cols=105 Identities=22% Similarity=0.269 Sum_probs=67.1
Q ss_pred ceEEEeCc-ChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEcccCcccCCcccCCchhchhhhcc-cCCCCCHHHHHhc
Q 007802 330 QTFLFLGA-GEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLIVSSRKESLQHFKKPWAHE-HAPIKSLLDAVKA 407 (589)
Q Consensus 330 ~riv~~GA-GsAg~GiA~ll~~~~~~~~G~s~eeA~~~i~~vD~~GLv~~~r~~~l~~~k~~fa~~-~~~~~~L~e~V~~ 407 (589)
.||+|+|| |..|..+|.+|... .+. -..+.++|++-. .++..-++.+. .....- .....++.+.+++
T Consensus 1 ~KI~IIGAsG~VG~aia~~l~~~----~~~-----~~el~L~d~~~~-~~g~alDl~~~-~~~~~i~~~~~~d~~~~l~~ 69 (312)
T PRK05086 1 MKVAVLGAAGGIGQALALLLKTQ----LPA-----GSELSLYDIAPV-TPGVAVDLSHI-PTAVKIKGFSGEDPTPALEG 69 (312)
T ss_pred CEEEEECCCCHHHHHHHHHHHcC----CCC-----ccEEEEEecCCC-CcceehhhhcC-CCCceEEEeCCCCHHHHcCC
Confidence 38999999 99999999877432 122 256889997522 11110012211 000000 0012467788876
Q ss_pred cCCcEEEeecCCCCC--------------CCHHHHHHHHcCCCCcEEEecCCCC
Q 007802 408 IKPTMLMGTSGVGKT--------------FTKEVVEAMASFNEKPVIFALSNPT 447 (589)
Q Consensus 408 vkPtvLIG~S~~~g~--------------Fteevv~~Ma~~~erPIIFaLSNPt 447 (589)
.|++|=+.+.+.- ..+++++.|.+++.+.+|+--|||.
T Consensus 70 --~DiVIitaG~~~~~~~~R~dll~~N~~i~~~ii~~i~~~~~~~ivivvsNP~ 121 (312)
T PRK05086 70 --ADVVLISAGVARKPGMDRSDLFNVNAGIVKNLVEKVAKTCPKACIGIITNPV 121 (312)
T ss_pred --CCEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEccCch
Confidence 8988866665321 4578999999999999999999998
No 55
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=93.58 E-value=0.12 Score=51.03 Aligned_cols=38 Identities=29% Similarity=0.375 Sum_probs=33.8
Q ss_pred CCCCCceEEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEccc
Q 007802 325 GTLADQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSK 373 (589)
Q Consensus 325 ~~l~d~riv~~GAGsAg~GiA~ll~~~~~~~~G~s~eeA~~~i~~vD~~ 373 (589)
++|++.||+++|+|..|.-+|+.|+.+ |+ ++|+++|.+
T Consensus 17 ~kl~~~~VlviG~GglGs~ia~~La~~-----Gv------~~i~lvD~d 54 (202)
T TIGR02356 17 QRLLNSHVLIIGAGGLGSPAALYLAGA-----GV------GTIVIVDDD 54 (202)
T ss_pred HHhcCCCEEEECCCHHHHHHHHHHHHc-----CC------CeEEEecCC
Confidence 478999999999999999999988764 76 789999997
No 56
>cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional
Probab=93.43 E-value=0.68 Score=43.84 Aligned_cols=83 Identities=17% Similarity=0.193 Sum_probs=64.3
Q ss_pred HHHHHHHHHHHHHhCCCCCCceEEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEcccCcccCCcccCCchhch
Q 007802 310 SVVLAGILSALKLVGGTLADQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLIVSSRKESLQHFKK 389 (589)
Q Consensus 310 aV~lAgll~Alr~~g~~l~d~riv~~GAGsAg~GiA~ll~~~~~~~~G~s~eeA~~~i~~vD~~GLv~~~r~~~l~~~k~ 389 (589)
-++..|++..++..|.++++++|+++|.+.. +++-+...|.+ +|. .+..+|++.
T Consensus 9 p~t~~a~~~ll~~~~~~~~gk~v~VvGrs~~---vG~pla~lL~~-~ga-------tV~~~~~~t--------------- 62 (140)
T cd05212 9 SPVAKAVKELLNKEGVRLDGKKVLVVGRSGI---VGAPLQCLLQR-DGA-------TVYSCDWKT--------------- 62 (140)
T ss_pred ccHHHHHHHHHHHcCCCCCCCEEEEECCCch---HHHHHHHHHHH-CCC-------EEEEeCCCC---------------
Confidence 4578889999999999999999999998654 44555444443 353 466777641
Q ss_pred hhhcccCCCCCHHHHHhccCCcEEEeecCCCCCCCHHHHH
Q 007802 390 PWAHEHAPIKSLLDAVKAIKPTMLMGTSGVGKTFTKEVVE 429 (589)
Q Consensus 390 ~fa~~~~~~~~L~e~V~~vkPtvLIG~S~~~g~Fteevv~ 429 (589)
++|.|.+++ +|++|-..+.++.|+.|.||
T Consensus 63 ---------~~l~~~v~~--ADIVvsAtg~~~~i~~~~ik 91 (140)
T cd05212 63 ---------IQLQSKVHD--ADVVVVGSPKPEKVPTEWIK 91 (140)
T ss_pred ---------cCHHHHHhh--CCEEEEecCCCCccCHHHcC
Confidence 268888987 99999999999999999987
No 57
>PRK08223 hypothetical protein; Validated
Probab=93.39 E-value=0.14 Score=54.05 Aligned_cols=57 Identities=16% Similarity=0.087 Sum_probs=45.8
Q ss_pred HHHHHHHcCCCceeccCCCchHHHHHHHHHHHHHHhCCCCCCceEEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeE
Q 007802 288 FELLSKYSSSHLVFNDDIQGTASVVLAGILSALKLVGGTLADQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKI 367 (589)
Q Consensus 288 f~iL~ryr~~~~~FnDDiQGTaaV~lAgll~Alr~~g~~l~d~riv~~GAGsAg~GiA~ll~~~~~~~~G~s~eeA~~~i 367 (589)
|..-++|..++..|..+-| .+|++.||+|+|+|..|.-+|..|+.+ |+ ++|
T Consensus 4 ~~~~~~ysRq~~~iG~e~Q------------------~kL~~s~VlIvG~GGLGs~va~~LA~a-----GV------G~i 54 (287)
T PRK08223 4 FDYDEAFCRNLGWITPTEQ------------------QRLRNSRVAIAGLGGVGGIHLLTLARL-----GI------GKF 54 (287)
T ss_pred ccHHHHHhhhhhhcCHHHH------------------HHHhcCCEEEECCCHHHHHHHHHHHHh-----CC------CeE
Confidence 5666777766666554433 578999999999999999999998875 77 789
Q ss_pred EEEccc
Q 007802 368 WLVDSK 373 (589)
Q Consensus 368 ~~vD~~ 373 (589)
.++|.+
T Consensus 55 ~lvD~D 60 (287)
T PRK08223 55 TIADFD 60 (287)
T ss_pred EEEeCC
Confidence 999988
No 58
>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.
Probab=93.33 E-value=0.15 Score=50.59 Aligned_cols=123 Identities=18% Similarity=0.228 Sum_probs=73.5
Q ss_pred CCCCCceEEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEcccCcccCCcccCCchhchhhhcccCC--CCCHH
Q 007802 325 GTLADQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLIVSSRKESLQHFKKPWAHEHAP--IKSLL 402 (589)
Q Consensus 325 ~~l~d~riv~~GAGsAg~GiA~ll~~~~~~~~G~s~eeA~~~i~~vD~~GLv~~~r~~~l~~~k~~fa~~~~~--~~~L~ 402 (589)
.+|++.||+|+|+|..|.+||..|+.+ |+ +++.++|.+=+ .. .+|+.+ ..+..+-.. ...+.
T Consensus 17 ~~L~~~~V~IvG~GglGs~ia~~La~~-----Gv------g~i~lvD~D~v-e~---sNL~Rq-~~~~~~iG~~Ka~~~~ 80 (200)
T TIGR02354 17 QKLEQATVAICGLGGLGSNVAINLARA-----GI------GKLILVDFDVV-EP---SNLNRQ-QYKASQVGEPKTEALK 80 (200)
T ss_pred HHHhCCcEEEECcCHHHHHHHHHHHHc-----CC------CEEEEECCCEE-cc---cccccc-cCChhhCCCHHHHHHH
Confidence 468899999999999999999999764 76 78999999822 22 235543 222211111 12467
Q ss_pred HHHhccCCcEEEeecCCCCCCCHHHHHHHHcCCCCcEEE-ecCCCCCCCCCCHHHHhccccCcEEEe
Q 007802 403 DAVKAIKPTMLMGTSGVGKTFTKEVVEAMASFNEKPVIF-ALSNPTSQSECTAEEAYTWSKGQAIFA 468 (589)
Q Consensus 403 e~V~~vkPtvLIG~S~~~g~Fteevv~~Ma~~~erPIIF-aLSNPt~~~E~t~eda~~wT~GraifA 468 (589)
+.++.+.|++-|-. ...-++++-+...-+ +--+|+ +.-||..+.+...+ +.+..+...|++
T Consensus 81 ~~l~~inp~~~i~~--~~~~i~~~~~~~~~~--~~DlVi~a~Dn~~~k~~l~~~-~~~~~~~~~ii~ 142 (200)
T TIGR02354 81 ENISEINPYTEIEA--YDEKITEENIDKFFK--DADIVCEAFDNAEAKAMLVNA-VLEKYKDKYLIA 142 (200)
T ss_pred HHHHHHCCCCEEEE--eeeeCCHhHHHHHhc--CCCEEEECCCCHHHHHHHHHH-HHHHcCCCcEEE
Confidence 77888888865443 333567776665443 233554 65677755443332 222223455554
No 59
>PRK14191 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=93.27 E-value=0.34 Score=51.05 Aligned_cols=83 Identities=16% Similarity=0.171 Sum_probs=67.9
Q ss_pred HHHHHHHHHHHHHHhCCCCCCceEEEeCcC-hHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEcccCcccCCcccCCchh
Q 007802 309 ASVVLAGILSALKLVGGTLADQTFLFLGAG-EAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLIVSSRKESLQHF 387 (589)
Q Consensus 309 aaV~lAgll~Alr~~g~~l~d~riv~~GAG-sAg~GiA~ll~~~~~~~~G~s~eeA~~~i~~vD~~GLv~~~r~~~l~~~ 387 (589)
.-+|-+|++.=++-.+.+++++++|++|.| ..|.-+|.++.. .|. .+.+++++ .
T Consensus 137 ~PcTp~avi~lL~~~~i~l~Gk~vvVvGrs~~VG~Pla~lL~~-----~gA-------tVtv~hs~-------t------ 191 (285)
T PRK14191 137 VPATPMGVMRLLKHYHIEIKGKDVVIIGASNIVGKPLAMLMLN-----AGA-------SVSVCHIL-------T------ 191 (285)
T ss_pred CCCcHHHHHHHHHHhCCCCCCCEEEEECCCchhHHHHHHHHHH-----CCC-------EEEEEeCC-------c------
Confidence 457888889999999999999999999999 999999998864 253 35556442 0
Q ss_pred chhhhcccCCCCCHHHHHhccCCcEEEeecCCCCCCCHHHHH
Q 007802 388 KKPWAHEHAPIKSLLDAVKAIKPTMLMGTSGVGKTFTKEVVE 429 (589)
Q Consensus 388 k~~fa~~~~~~~~L~e~V~~vkPtvLIG~S~~~g~Fteevv~ 429 (589)
++|.+.+++ +|++|...+.++.+++++|+
T Consensus 192 -----------~~l~~~~~~--ADIvV~AvG~p~~i~~~~vk 220 (285)
T PRK14191 192 -----------KDLSFYTQN--ADIVCVGVGKPDLIKASMVK 220 (285)
T ss_pred -----------HHHHHHHHh--CCEEEEecCCCCcCCHHHcC
Confidence 246788886 99999999999999999985
No 60
>cd05296 GH4_P_beta_glucosidase Glycoside Hydrolases Family 4; Phospho-beta-glucosidase. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases such as the phospho-beta-glucosidases. Other organisms (such as archaea and Thermotoga maritima ) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. The 6-phospho-beta-glucosidase from Thermotoga maritima hydrolylzes cellobiose 6-phosphate (6P) into glucose-6P and glucose, in an NAD+ and Mn2+ dependent fashion. The Escherichia coli 6-phospho-beta-glucosidase (also called celF) hydrolyzes a variety of phospho-beta-glucosides including cellobiose-6P, salicin-6P, arbutin-6P, and gentobiose-6P. Phospho-beta-glucosidases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein
Probab=93.14 E-value=0.2 Score=55.18 Aligned_cols=125 Identities=13% Similarity=0.243 Sum_probs=74.9
Q ss_pred ceEEEeCcChHHHHHHHHHHHHHHh-ccCCCHHhhcCeEEEEcccCcccCCcccCCchhchhhhcc-cCC-----CCCHH
Q 007802 330 QTFLFLGAGEAGTGIAELIALEMSK-QTKAPIEEARKKIWLVDSKGLIVSSRKESLQHFKKPWAHE-HAP-----IKSLL 402 (589)
Q Consensus 330 ~riv~~GAGsAg~GiA~ll~~~~~~-~~G~s~eeA~~~i~~vD~~GLv~~~r~~~l~~~k~~fa~~-~~~-----~~~L~ 402 (589)
.||+|+||||+ -+-.++..+.+ ...++ .+.|||+|.+- ..|-..+...-+.+.+. ..+ ..++.
T Consensus 1 ~KI~iIGaGS~---~tp~li~~l~~~~~~l~----~~ei~L~Did~---~~rl~~v~~~~~~~~~~~~~~~~v~~t~d~~ 70 (419)
T cd05296 1 MKLTIIGGGSS---YTPELIEGLIRRYEELP----VTELVLVDIDE---EEKLEIVGALAKRMVKKAGLPIKVHLTTDRR 70 (419)
T ss_pred CEEEEECCchH---hHHHHHHHHHhccccCC----CCEEEEecCCh---HHHHHHHHHHHHHHHHhhCCCeEEEEeCCHH
Confidence 38999999996 33344444433 22332 47899999863 22211111111122221 112 25899
Q ss_pred HHHhccCCcEEEeecCCCCC----------------------------------CCHHHHHHHHcCCCCcEEEecCCCCC
Q 007802 403 DAVKAIKPTMLMGTSGVGKT----------------------------------FTKEVVEAMASFNEKPVIFALSNPTS 448 (589)
Q Consensus 403 e~V~~vkPtvLIG~S~~~g~----------------------------------Fteevv~~Ma~~~erPIIFaLSNPt~ 448 (589)
||++. +|.+|=.-.++|. .=.++++.|.++|..-+|+=.|||..
T Consensus 71 ~al~g--adfVi~~~~vg~~~~r~~de~i~~~~Gi~gqET~G~GG~~~a~rni~ii~~i~~~i~~~~Pda~lin~TNP~~ 148 (419)
T cd05296 71 EALEG--ADFVFTQIRVGGLEARALDERIPLKHGVIGQETTGAGGFAKALRTIPVILDIAEDVEELAPDAWLINFTNPAG 148 (419)
T ss_pred HHhCC--CCEEEEEEeeCCcchhhhhhhhHHHcCCccccCCCcchHHHhhhhHHHHHHHHHHHHHHCCCeEEEEecCHHH
Confidence 99987 7877755555542 12388899999999999999999983
Q ss_pred CCCCCHHHHhccccCcEEEeeC
Q 007802 449 QSECTAEEAYTWSKGQAIFASG 470 (589)
Q Consensus 449 ~~E~t~eda~~wT~GraifAsG 470 (589)
+..+-++++++-| +|.+|
T Consensus 149 ---ivt~a~~k~~~~r-viGlc 166 (419)
T cd05296 149 ---IVTEAVLRHTGDR-VIGLC 166 (419)
T ss_pred ---HHHHHHHHhccCC-EEeeC
Confidence 4445556667444 44443
No 61
>PF00208 ELFV_dehydrog: Glutamate/Leucine/Phenylalanine/Valine dehydrogenase; InterPro: IPR006096 Glutamate, leucine, phenylalanine and valine dehydrogenases are structurally and functionally related. They contain a Gly-rich region containing a conserved Lys residue, which has been implicated in the catalytic activity, in each case a reversible oxidative deamination reaction. Glutamate dehydrogenases (1.4.1.2 from EC, 1.4.1.3 from EC, and 1.4.1.4 from EC) (GluDH) are enzymes that catalyse the NAD- and/or NADP-dependent reversible deamination of L-glutamate into alpha-ketoglutarate [, ]. GluDH isozymes are generally involved with either ammonia assimilation or glutamate catabolism. Two separate enzymes are present in yeasts: the NADP-dependent enzyme, which catalyses the amination of alpha-ketoglutarate to L-glutamate; and the NAD-dependent enzyme, which catalyses the reverse reaction [] - this form links the L-amino acids with the Krebs cycle, which provides a major pathway for metabolic interconversion of alpha-amino acids and alpha- keto acids []. Leucine dehydrogenase (1.4.1.9 from EC) (LeuDH) is a NAD-dependent enzyme that catalyses the reversible deamination of leucine and several other aliphatic amino acids to their keto analogues []. Each subunit of this octameric enzyme from Bacillus sphaericus contains 364 amino acids and folds into two domains, separated by a deep cleft. The nicotinamide ring of the NAD+ cofactor binds deep in this cleft, which is thought to close during the hydride transfer step of the catalytic cycle. Phenylalanine dehydrogenase (1.4.1.20 from EC) (PheDH) is na NAD-dependent enzyme that catalyses the reversible deamidation of L-phenylalanine into phenyl-pyruvate []. Valine dehydrogenase (1.4.1.8 from EC) (ValDH) is an NADP-dependent enzyme that catalyses the reversible deamidation of L-valine into 3-methyl-2-oxobutanoate []. This entry represents the C-terminal domain of these proteins.; GO: 0016491 oxidoreductase activity, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process; PDB: 1LEH_A 3AOG_D 3AOE_A 2YFQ_B 2YFH_B 1HRD_A 1K89_A 1AUP_A 1BGV_A 1B26_C ....
Probab=92.95 E-value=0.24 Score=50.76 Aligned_cols=130 Identities=18% Similarity=0.266 Sum_probs=88.1
Q ss_pred CCCchHHHHHHHHHHHHHHhCCC-CCCceEEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEcccCcccCCccc
Q 007802 304 DIQGTASVVLAGILSALKLVGGT-LADQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLIVSSRKE 382 (589)
Q Consensus 304 DiQGTaaV~lAgll~Alr~~g~~-l~d~riv~~GAGsAg~GiA~ll~~~~~~~~G~s~eeA~~~i~~vD~~GLv~~~r~~ 382 (589)
--+-||-=+..++-.+++..+.. +++.|++|-|.|..|...|+.|.+. |. +=+-+.|++|.|++..+-
T Consensus 6 ~~~aTg~GV~~~~~~~~~~~~~~~l~g~~v~IqGfG~VG~~~a~~l~~~-----Ga------~vv~vsD~~G~i~~~~Gl 74 (244)
T PF00208_consen 6 RSEATGYGVAYAIEAALEHLGGDSLEGKRVAIQGFGNVGSHAARFLAEL-----GA------KVVAVSDSSGAIYDPDGL 74 (244)
T ss_dssp TTTHHHHHHHHHHHHHHHHTTCHSSTTCEEEEEESSHHHHHHHHHHHHT-----TE------EEEEEEESSEEEEETTEE
T ss_pred CCcchHHHHHHHHHHHHHHcCCCCcCCCEEEEECCCHHHHHHHHHHHHc-----CC------EEEEEecCceEEEcCCCc
Confidence 34567777888888999986665 9999999999999999999998763 53 446677888888865321
Q ss_pred CCchhchhhhcccCCCCCHH-----------H--HHhccCCcEEEeecCCCCCCCHHHHH-HHHcCCCCcEEEecCC-CC
Q 007802 383 SLQHFKKPWAHEHAPIKSLL-----------D--AVKAIKPTMLMGTSGVGKTFTKEVVE-AMASFNEKPVIFALSN-PT 447 (589)
Q Consensus 383 ~l~~~k~~fa~~~~~~~~L~-----------e--~V~~vkPtvLIG~S~~~g~Fteevv~-~Ma~~~erPIIFaLSN-Pt 447 (589)
++....+...+.......+. + .+-.++.|+||=+ +.++.+|++.+. .+. +.-+||.--+| |+
T Consensus 75 d~~~l~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~il~~~~DiliP~-A~~~~I~~~~~~~~i~--~~akiIvegAN~p~ 151 (244)
T PF00208_consen 75 DVEELLRIKEERGSRVDDYPLESPDGAEYIPNDDEILSVDCDILIPC-ALGNVINEDNAPSLIK--SGAKIIVEGANGPL 151 (244)
T ss_dssp HHHHHHHHHHHHSSHSTTGTHTCSSTSEEECHHCHGGTSSSSEEEEE-SSSTSBSCHHHCHCHH--TT-SEEEESSSSSB
T ss_pred hHHHHHHHHHHhCCcccccccccccceeEeccccccccccccEEEEc-CCCCeeCHHHHHHHHh--ccCcEEEeCcchhc
Confidence 11111111111111011111 1 4555799999988 667899999998 764 24789999999 55
No 62
>cd00650 LDH_MDH_like NAD-dependent, lactate dehydrogenase-like, 2-hydroxycarboxylate dehydrogenase family. Members of this family include ubiquitous enzymes like L-lactate dehydrogenases (LDH), L-2-hydroxyisocaproate dehydrogenases, and some malate dehydrogenases (MDH). LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH/MDH-like proteins are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains
Probab=92.61 E-value=0.25 Score=50.36 Aligned_cols=126 Identities=20% Similarity=0.297 Sum_probs=77.4
Q ss_pred EEEeCc-ChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEcccCcccCCcccCCchhchhhhcc--cCCCCCHHHHHhcc
Q 007802 332 FLFLGA-GEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLIVSSRKESLQHFKKPWAHE--HAPIKSLLDAVKAI 408 (589)
Q Consensus 332 iv~~GA-GsAg~GiA~ll~~~~~~~~G~s~eeA~~~i~~vD~~GLv~~~r~~~l~~~k~~fa~~--~~~~~~L~e~V~~v 408 (589)
|.|+|| |..|.++|..++.. |. .....++|+|.+.-..+....+|.+...++ .. -...+++.+++++
T Consensus 1 I~IIGagG~vG~~ia~~l~~~-----~~---~~~~el~L~D~~~~~l~~~~~dl~~~~~~~-~~~~i~~~~d~~~~~~~- 70 (263)
T cd00650 1 IAVIGAGGNVGPALAFGLADG-----SV---LLAIELVLYDIDEEKLKGVAMDLQDAVEPL-ADIKVSITDDPYEAFKD- 70 (263)
T ss_pred CEEECCCChHHHHHHHHHHhC-----CC---CcceEEEEEeCCcccchHHHHHHHHhhhhc-cCcEEEECCchHHHhCC-
Confidence 578999 99999999887652 42 123679999986411111111132222222 11 1112567888886
Q ss_pred CCcEEEeecCCCCC--------------CCHHHHHHHHcCCCCcEEEecCCCCCCCCCCHHHHhccc--cCcEEEeeCC
Q 007802 409 KPTMLMGTSGVGKT--------------FTKEVVEAMASFNEKPVIFALSNPTSQSECTAEEAYTWS--KGQAIFASGS 471 (589)
Q Consensus 409 kPtvLIG~S~~~g~--------------Fteevv~~Ma~~~erPIIFaLSNPt~~~E~t~eda~~wT--~GraifAsGS 471 (589)
.|++|=+.+.++. .-+++.+.|.++|...+++-.|||. .....-+++++ .-.=+|++|.
T Consensus 71 -aDiVv~t~~~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~~i~~tNP~---d~~t~~~~~~sg~~~~kviG~~~ 145 (263)
T cd00650 71 -ADVVIITAGVGRKPGMGRLDLLKRNVPIVKEIGDNIEKYSPDAWIIVVSNPV---DIITYLVWRYSGLPKEKVIGLGT 145 (263)
T ss_pred -CCEEEECCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcH---HHHHHHHHHHhCCCchhEEEeec
Confidence 8988865554332 3578999999999999999999998 34444555553 2233566653
No 63
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=92.55 E-value=0.3 Score=52.26 Aligned_cols=39 Identities=23% Similarity=0.346 Sum_probs=34.6
Q ss_pred CCCCCceEEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEcccC
Q 007802 325 GTLADQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKG 374 (589)
Q Consensus 325 ~~l~d~riv~~GAGsAg~GiA~ll~~~~~~~~G~s~eeA~~~i~~vD~~G 374 (589)
.+|++.||+|+|+|..|..+|+.|+.+ |+ ++|.++|.+=
T Consensus 20 ~~L~~~~VlIiG~GglGs~va~~La~a-----Gv------g~i~lvD~D~ 58 (338)
T PRK12475 20 RKIREKHVLIVGAGALGAANAEALVRA-----GI------GKLTIADRDY 58 (338)
T ss_pred HhhcCCcEEEECCCHHHHHHHHHHHHc-----CC------CEEEEEcCCc
Confidence 478999999999999999999999775 76 7899999983
No 64
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=92.48 E-value=4.6 Score=41.93 Aligned_cols=121 Identities=21% Similarity=0.297 Sum_probs=66.5
Q ss_pred ceEEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEcccCcccCCcccCCchhchh----hh---c---------
Q 007802 330 QTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLIVSSRKESLQHFKKP----WA---H--------- 393 (589)
Q Consensus 330 ~riv~~GAGsAg~GiA~ll~~~~~~~~G~s~eeA~~~i~~vD~~GLv~~~r~~~l~~~k~~----fa---~--------- 393 (589)
+||.|+|+|..|.+||..+... |. +++++|.+- . .+...+.. +. .
T Consensus 5 ~~I~vIGaG~mG~~iA~~l~~~-----g~-------~V~~~d~~~----~---~~~~~~~~~~~~~~~~~~~~~~~~~~~ 65 (311)
T PRK06130 5 QNLAIIGAGTMGSGIAALFARK-----GL-------QVVLIDVME----G---ALERARGVIERALGVYAPLGIASAGMG 65 (311)
T ss_pred cEEEEECCCHHHHHHHHHHHhC-----CC-------eEEEEECCH----H---HHHHHHHHHHHHHHHhhhcccHHHHhh
Confidence 5799999999999999988653 53 588888641 1 11111111 00 0
Q ss_pred ccCCCCCHHHHHhccCCcEEEeecCCCCC-CCHHHHHHHHcCCCCcEEEecCCCCCCCCCCHHHHhccccCcEEEeeCCC
Q 007802 394 EHAPIKSLLDAVKAIKPTMLMGTSGVGKT-FTKEVVEAMASFNEKPVIFALSNPTSQSECTAEEAYTWSKGQAIFASGSP 472 (589)
Q Consensus 394 ~~~~~~~L~e~V~~vkPtvLIG~S~~~g~-Fteevv~~Ma~~~erPIIFaLSNPt~~~E~t~eda~~wT~GraifAsGSP 472 (589)
......++.++++. .|++| ++..+.. -.+++++......+.-.|+. ||..+. +.++.-++.....-|..+-|
T Consensus 66 ~i~~~~~~~~~~~~--aDlVi-~av~~~~~~~~~v~~~l~~~~~~~~ii~-s~tsg~---~~~~l~~~~~~~~~~ig~h~ 138 (311)
T PRK06130 66 RIRMEAGLAAAVSG--ADLVI-EAVPEKLELKRDVFARLDGLCDPDTIFA-TNTSGL---PITAIAQAVTRPERFVGTHF 138 (311)
T ss_pred ceEEeCCHHHHhcc--CCEEE-EeccCcHHHHHHHHHHHHHhCCCCcEEE-ECCCCC---CHHHHHhhcCCcccEEEEcc
Confidence 00112467777775 67776 4443321 35677777776555444443 444332 24455444433333444556
Q ss_pred CCcc
Q 007802 473 FDPV 476 (589)
Q Consensus 473 f~pv 476 (589)
|.|.
T Consensus 139 ~~p~ 142 (311)
T PRK06130 139 FTPA 142 (311)
T ss_pred CCCC
Confidence 6655
No 65
>PRK12749 quinate/shikimate dehydrogenase; Reviewed
Probab=92.46 E-value=0.28 Score=51.39 Aligned_cols=49 Identities=33% Similarity=0.443 Sum_probs=39.7
Q ss_pred HHHHHHHHHhCCCCCCceEEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEccc
Q 007802 314 AGILSALKLVGGTLADQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSK 373 (589)
Q Consensus 314 Agll~Alr~~g~~l~d~riv~~GAGsAg~GiA~ll~~~~~~~~G~s~eeA~~~i~~vD~~ 373 (589)
.|++.+++..+.++++.+++++|||-|+.+|+-.+.. .|+ ++|+++++.
T Consensus 109 ~Gf~~~l~~~~~~~~~k~vlvlGaGGaarAi~~~l~~-----~g~------~~i~i~nRt 157 (288)
T PRK12749 109 TGHIRAIKESGFDIKGKTMVLLGAGGASTAIGAQGAI-----EGL------KEIKLFNRR 157 (288)
T ss_pred HHHHHHHHhcCCCcCCCEEEEECCcHHHHHHHHHHHH-----CCC------CEEEEEeCC
Confidence 4678888888888999999999999998877765543 365 689999984
No 66
>PRK05600 thiamine biosynthesis protein ThiF; Validated
Probab=92.46 E-value=0.26 Score=53.42 Aligned_cols=102 Identities=20% Similarity=0.259 Sum_probs=63.4
Q ss_pred CCCCCceEEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEcccCcccCCc-c-------cCCchhchhhhcc--
Q 007802 325 GTLADQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLIVSSR-K-------ESLQHFKKPWAHE-- 394 (589)
Q Consensus 325 ~~l~d~riv~~GAGsAg~GiA~ll~~~~~~~~G~s~eeA~~~i~~vD~~GLv~~~r-~-------~~l~~~k~~fa~~-- 394 (589)
++|++.||+++|+|..|.-+|..|+.+ |+ ++|.++|.+=+ ..+. . +++-..|..-+..
T Consensus 37 ~~l~~~~VliiG~GglG~~v~~~La~~-----Gv------g~i~ivD~D~v-e~sNL~RQ~l~~~~diG~~Ka~~~~~~l 104 (370)
T PRK05600 37 ERLHNARVLVIGAGGLGCPAMQSLASA-----GV------GTITLIDDDTV-DVSNIHRQILFGASDVGRPKVEVAAERL 104 (370)
T ss_pred HHhcCCcEEEECCCHHHHHHHHHHHHc-----CC------CEEEEEeCCEE-ccccccccccCChhHCCCHHHHHHHHHH
Confidence 678999999999999999999999764 76 78999999832 1110 0 0111112111110
Q ss_pred ---cCC---------C--CCHHHHHhccCCcEEEeecCCCCCCCHHHHHHHHcCCCCcEEEe
Q 007802 395 ---HAP---------I--KSLLDAVKAIKPTMLMGTSGVGKTFTKEVVEAMASFNEKPVIFA 442 (589)
Q Consensus 395 ---~~~---------~--~~L~e~V~~vkPtvLIG~S~~~g~Fteevv~~Ma~~~erPIIFa 442 (589)
.+. + .++.+.+++ .|++|.++.-. =+.-.|..++.....|.|++
T Consensus 105 ~~~np~v~i~~~~~~i~~~~~~~~~~~--~DlVid~~Dn~--~~r~~in~~~~~~~iP~v~~ 162 (370)
T PRK05600 105 KEIQPDIRVNALRERLTAENAVELLNG--VDLVLDGSDSF--ATKFLVADAAEITGTPLVWG 162 (370)
T ss_pred HHHCCCCeeEEeeeecCHHHHHHHHhC--CCEEEECCCCH--HHHHHHHHHHHHcCCCEEEE
Confidence 011 1 245556654 78887766532 25566777777777888876
No 67
>PRK08605 D-lactate dehydrogenase; Validated
Probab=92.08 E-value=3.4 Score=44.08 Aligned_cols=154 Identities=10% Similarity=0.152 Sum_probs=93.3
Q ss_pred HHHHHHHHHhcCCceeeEeecCCCccHHHHHHHHcCCCceecc-CC--CchHHHHHHHHHHHHHH---------------
Q 007802 261 QEFMTAVKQNYGEKVLIQFEDFANHNAFELLSKYSSSHLVFND-DI--QGTASVVLAGILSALKL--------------- 322 (589)
Q Consensus 261 defv~av~~~fGp~~lIq~EDf~~~~Af~iL~ryr~~~~~FnD-Di--QGTaaV~lAgll~Alr~--------------- 322 (589)
.|++++..+. |- -+|+.-=-+-.| .++-.--+..+.+.|- +. +.+|=-+++.+|+.+|-
T Consensus 59 ~~~l~~~~~~-~l-k~I~~~~~G~d~-id~~~~~~~gi~v~n~~~~~~~~vAE~~~~~~l~~~R~~~~~~~~~~~~~~~~ 135 (332)
T PRK08605 59 EAIYKLLNEL-GI-KQIAQRSAGFDT-YDLELATKYNLIISNVPSYSPESIAEFTVTQAINLVRHFNQIQTKVREHDFRW 135 (332)
T ss_pred HHHHHhhhhc-Cc-eEEEEcccccch-hhHHHHHHCCCEEEeCCCCChHHHHHHHHHHHHHHhcChHHHHHHHHhCCccc
Confidence 4556555430 11 125544344333 3333233457777774 22 45666678888876652
Q ss_pred ----hCCCCCCceEEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEcccCcccCCcccCCchhchhhhcccCCC
Q 007802 323 ----VGGTLADQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLIVSSRKESLQHFKKPWAHEHAPI 398 (589)
Q Consensus 323 ----~g~~l~d~riv~~GAGsAg~GiA~ll~~~~~~~~G~s~eeA~~~i~~vD~~GLv~~~r~~~l~~~k~~fa~~~~~~ 398 (589)
.|..|.+++|.|+|.|..|..+|+.+..+ .|+ ++|.+|+.. . ... ..++ ...
T Consensus 136 ~~~~~~~~l~g~~VgIIG~G~IG~~vA~~L~~~----~g~-------~V~~~d~~~----~--~~~----~~~~---~~~ 191 (332)
T PRK08605 136 EPPILSRSIKDLKVAVIGTGRIGLAVAKIFAKG----YGS-------DVVAYDPFP----N--AKA----ATYV---DYK 191 (332)
T ss_pred ccccccceeCCCEEEEECCCHHHHHHHHHHHhc----CCC-------EEEEECCCc----c--HhH----Hhhc---ccc
Confidence 13468899999999999999999998533 253 588888752 0 001 1111 123
Q ss_pred CCHHHHHhccCCcEEEeecC----CCCCCCHHHHHHHHcCCCCcEEEecCCC
Q 007802 399 KSLLDAVKAIKPTMLMGTSG----VGKTFTKEVVEAMASFNEKPVIFALSNP 446 (589)
Q Consensus 399 ~~L~e~V~~vkPtvLIG~S~----~~g~Fteevv~~Ma~~~erPIIFaLSNP 446 (589)
.+|.|+++. .|+++=.-- ..++|+++.++.|. +..++.=.|.=
T Consensus 192 ~~l~ell~~--aDvIvl~lP~t~~t~~li~~~~l~~mk---~gailIN~sRG 238 (332)
T PRK08605 192 DTIEEAVEG--ADIVTLHMPATKYNHYLFNADLFKHFK---KGAVFVNCARG 238 (332)
T ss_pred CCHHHHHHh--CCEEEEeCCCCcchhhhcCHHHHhcCC---CCcEEEECCCC
Confidence 589999986 898885421 23577788888885 56687777663
No 68
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=92.07 E-value=0.83 Score=51.80 Aligned_cols=182 Identities=18% Similarity=0.203 Sum_probs=96.3
Q ss_pred ccccCcccccccccCCChhhHHHHHHHHHHHHHHhcCCceeeEeecCCC-ccHHHHHHHHcCCCceeccCCCchHHHHHH
Q 007802 236 QLLNDEFYIGLRQKRATGQEYAELLQEFMTAVKQNYGEKVLIQFEDFAN-HNAFELLSKYSSSHLVFNDDIQGTASVVLA 314 (589)
Q Consensus 236 ~LL~Dp~YlG~r~~R~~g~~y~~fidefv~av~~~fGp~~lIq~EDf~~-~~Af~iL~ryr~~~~~FnDDiQGTaaV~lA 314 (589)
.|.++-.++|+=|+--. .|.++++.++ .=++|-+|.+-. +.|. +.+..--+-.|-|=-+|..|
T Consensus 82 ~l~~g~~li~~l~p~~~--------~~l~~~l~~~--~it~ia~e~vpr~sraq------~~d~lssma~IAGy~Av~~a 145 (509)
T PRK09424 82 LLREGATLVSFIWPAQN--------PELLEKLAAR--GVTVLAMDAVPRISRAQ------SLDALSSMANIAGYRAVIEA 145 (509)
T ss_pred hcCCCCEEEEEeCcccC--------HHHHHHHHHc--CCEEEEeecccccccCC------CcccccchhhhhHHHHHHHH
Confidence 55666777888777322 2333333332 335577776642 1111 11233334456665555555
Q ss_pred HHHHHHHHhC-----CCCCCceEEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEcccCcccCCccc---CC--
Q 007802 315 GILSALKLVG-----GTLADQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLIVSSRKE---SL-- 384 (589)
Q Consensus 315 gll~Alr~~g-----~~l~d~riv~~GAGsAg~GiA~ll~~~~~~~~G~s~eeA~~~i~~vD~~GLv~~~r~~---~l-- 384 (589)
+-.-.--..| ......|++|+|+|.+|++.+..... .| | +++.+|.+- +|.+ .+
T Consensus 146 a~~~~~~~~g~~taaG~~pg~kVlViGaG~iGL~Ai~~Ak~-----lG-----A--~V~a~D~~~----~rle~aeslGA 209 (509)
T PRK09424 146 AHEFGRFFTGQITAAGKVPPAKVLVIGAGVAGLAAIGAAGS-----LG-----A--IVRAFDTRP----EVAEQVESMGA 209 (509)
T ss_pred HHHhcccCCCceeccCCcCCCEEEEECCcHHHHHHHHHHHH-----CC-----C--EEEEEeCCH----HHHHHHHHcCC
Confidence 4332111111 13458999999999999988765543 26 3 477777641 1100 00
Q ss_pred ----------chhchhhhcccCCCCCHHHHH-----hc-cCCcEEEeecCCCC-----CCCHHHHHHHHcCCCCcEEEec
Q 007802 385 ----------QHFKKPWAHEHAPIKSLLDAV-----KA-IKPTMLMGTSGVGK-----TFTKEVVEAMASFNEKPVIFAL 443 (589)
Q Consensus 385 ----------~~~k~~fa~~~~~~~~L~e~V-----~~-vkPtvLIG~S~~~g-----~Fteevv~~Ma~~~erPIIFaL 443 (589)
......|++... .++.+.. +. -+.|++|.+++.+| +++++.++.|. ..-.|.=+
T Consensus 210 ~~v~i~~~e~~~~~~gya~~~s--~~~~~~~~~~~~~~~~gaDVVIetag~pg~~aP~lit~~~v~~mk---pGgvIVdv 284 (509)
T PRK09424 210 EFLELDFEEEGGSGDGYAKVMS--EEFIKAEMALFAEQAKEVDIIITTALIPGKPAPKLITAEMVASMK---PGSVIVDL 284 (509)
T ss_pred eEEEeccccccccccchhhhcc--hhHHHHHHHHHHhccCCCCEEEECCCCCcccCcchHHHHHHHhcC---CCCEEEEE
Confidence 001112333211 1222221 11 14999999999876 67999999996 44566667
Q ss_pred CCCC-CCCCCCH
Q 007802 444 SNPT-SQSECTA 454 (589)
Q Consensus 444 SNPt-~~~E~t~ 454 (589)
+-+. ..+|++.
T Consensus 285 g~~~GG~~e~t~ 296 (509)
T PRK09424 285 AAENGGNCELTV 296 (509)
T ss_pred ccCCCCCccccc
Confidence 7753 3345553
No 69
>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated
Probab=92.05 E-value=2.6 Score=47.31 Aligned_cols=123 Identities=16% Similarity=0.204 Sum_probs=68.5
Q ss_pred ceEEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEcccCcccCCcccCCchh------------chhhhcc--c
Q 007802 330 QTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLIVSSRKESLQHF------------KKPWAHE--H 395 (589)
Q Consensus 330 ~riv~~GAGsAg~GiA~ll~~~~~~~~G~s~eeA~~~i~~vD~~GLv~~~r~~~l~~~------------k~~fa~~--~ 395 (589)
.||-|+|+|..|.+||..++.+ |. ++.++|.+- +..+.+... +.+++.. .
T Consensus 5 ~kIavIG~G~MG~~iA~~la~~-----G~-------~V~v~D~~~----~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~i 68 (495)
T PRK07531 5 MKAACIGGGVIGGGWAARFLLA-----GI-------DVAVFDPHP----EAERIIGEVLANAERAYAMLTDAPLPPEGRL 68 (495)
T ss_pred CEEEEECcCHHHHHHHHHHHhC-----CC-------eEEEEeCCH----HHHHHHHHHHHHHHHHHhhhccchhhhhhce
Confidence 3799999999999999998763 64 578888741 110111100 0001110 0
Q ss_pred CCCCCHHHHHhccCCcEEEeecCCCCC-CCHHHHHHHHcCCCCcEEEecCCCCCCCCCCHHHHhcc--ccCcEEEeeCCC
Q 007802 396 APIKSLLDAVKAIKPTMLMGTSGVGKT-FTKEVVEAMASFNEKPVIFALSNPTSQSECTAEEAYTW--SKGQAIFASGSP 472 (589)
Q Consensus 396 ~~~~~L~e~V~~vkPtvLIG~S~~~g~-Fteevv~~Ma~~~erPIIFaLSNPt~~~E~t~eda~~w--T~GraifAsGSP 472 (589)
....++.|+++. .|++| .+..... +.+++.+.+.+..+.-.|+..|--. .+ +++.-+. ..|+++.+ .|
T Consensus 69 ~~~~~~~ea~~~--aD~Vi-eavpe~~~vk~~l~~~l~~~~~~~~iI~SsTsg--i~--~s~l~~~~~~~~r~~~~--hP 139 (495)
T PRK07531 69 TFCASLAEAVAG--ADWIQ-ESVPERLDLKRRVLAEIDAAARPDALIGSSTSG--FL--PSDLQEGMTHPERLFVA--HP 139 (495)
T ss_pred EeeCCHHHHhcC--CCEEE-EcCcCCHHHHHHHHHHHHhhCCCCcEEEEcCCC--CC--HHHHHhhcCCcceEEEE--ec
Confidence 123578899986 78887 5554432 4566666666655555666544322 22 3333232 24555544 58
Q ss_pred CCcce
Q 007802 473 FDPVE 477 (589)
Q Consensus 473 f~pv~ 477 (589)
|.|+.
T Consensus 140 ~nP~~ 144 (495)
T PRK07531 140 YNPVY 144 (495)
T ss_pred CCCcc
Confidence 88874
No 70
>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases. L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine
Probab=91.88 E-value=0.54 Score=49.21 Aligned_cols=125 Identities=14% Similarity=0.207 Sum_probs=74.9
Q ss_pred eEEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEcccCcccCCcccCCchhchhhhccc--CCCCCHHHHHhcc
Q 007802 331 TFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLIVSSRKESLQHFKKPWAHEH--APIKSLLDAVKAI 408 (589)
Q Consensus 331 riv~~GAGsAg~GiA~ll~~~~~~~~G~s~eeA~~~i~~vD~~GLv~~~r~~~l~~~k~~fa~~~--~~~~~L~e~V~~v 408 (589)
||.|+|+|.+|..+|..++. .|+ ..+|.++|++-=..++-..+|.+.. .+.... -...+.. .++
T Consensus 2 kI~IIGaG~vG~~~a~~l~~-----~g~-----~~ei~l~D~~~~~~~~~a~dL~~~~-~~~~~~~~i~~~~~~-~l~-- 67 (306)
T cd05291 2 KVVIIGAGHVGSSFAYSLVN-----QGI-----ADELVLIDINEEKAEGEALDLEDAL-AFLPSPVKIKAGDYS-DCK-- 67 (306)
T ss_pred EEEEECCCHHHHHHHHHHHh-----cCC-----CCEEEEEeCCcchhhHhHhhHHHHh-hccCCCeEEEcCCHH-HhC--
Confidence 89999999999999998754 265 2579999985221111111121111 111100 0112343 455
Q ss_pred CCcEEEeecCCCCC--------------CCHHHHHHHHcCCCCcEEEecCCCCCCCCCCHHHHhcccc--CcEEEeeCCC
Q 007802 409 KPTMLMGTSGVGKT--------------FTKEVVEAMASFNEKPVIFALSNPTSQSECTAEEAYTWSK--GQAIFASGSP 472 (589)
Q Consensus 409 kPtvLIG~S~~~g~--------------Fteevv~~Ma~~~erPIIFaLSNPt~~~E~t~eda~~wT~--GraifAsGSP 472 (589)
..|++|=+.+.+.. .=+++.+.|.+++..-+|+-.|||.. +...-++++++ -+-+|++|.-
T Consensus 68 ~aDIVIitag~~~~~g~~R~dll~~N~~i~~~~~~~i~~~~~~~~vivvsNP~d---~~~~~~~~~~g~p~~~v~g~gt~ 144 (306)
T cd05291 68 DADIVVITAGAPQKPGETRLDLLEKNAKIMKSIVPKIKASGFDGIFLVASNPVD---VITYVVQKLSGLPKNRVIGTGTS 144 (306)
T ss_pred CCCEEEEccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEecChHH---HHHHHHHHHhCcCHHHEeeccch
Confidence 49999988776521 12578888889999999999999983 44444544421 1236666643
No 71
>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []. L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....
Probab=91.74 E-value=0.1 Score=48.87 Aligned_cols=104 Identities=22% Similarity=0.364 Sum_probs=64.5
Q ss_pred eEEEeCc-ChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEccc-CcccCCcccCCchhchhhhcccCCCCCHHHHHhcc
Q 007802 331 TFLFLGA-GEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSK-GLIVSSRKESLQHFKKPWAHEHAPIKSLLDAVKAI 408 (589)
Q Consensus 331 riv~~GA-GsAg~GiA~ll~~~~~~~~G~s~eeA~~~i~~vD~~-GLv~~~r~~~l~~~k~~fa~~~~~~~~L~e~V~~v 408 (589)
||.|+|| |..|..+|-+|+.. |+ -+.|.|+|.+ .... +..-+|.+..-+.-++..-..+..+.++.
T Consensus 2 KV~IiGa~G~VG~~~a~~l~~~-----~l-----~~ei~L~D~~~~~~~-g~a~Dl~~~~~~~~~~~~i~~~~~~~~~~- 69 (141)
T PF00056_consen 2 KVAIIGAAGNVGSTLALLLAQQ-----GL-----ADEIVLIDINEDKAE-GEALDLSHASAPLPSPVRITSGDYEALKD- 69 (141)
T ss_dssp EEEEESTTSHHHHHHHHHHHHT-----TT-----SSEEEEEESSHHHHH-HHHHHHHHHHHGSTEEEEEEESSGGGGTT-
T ss_pred EEEEECCCChHHHHHHHHHHhC-----CC-----CCceEEeccCcccce-eeehhhhhhhhhccccccccccccccccc-
Confidence 8999999 99999999988763 55 2569999997 2111 11001222111110111111245566765
Q ss_pred CCcEEEeecCCC---CC-----------CCHHHHHHHHcCCCCcEEEecCCCC
Q 007802 409 KPTMLMGTSGVG---KT-----------FTKEVVEAMASFNEKPVIFALSNPT 447 (589)
Q Consensus 409 kPtvLIG~S~~~---g~-----------Fteevv~~Ma~~~erPIIFaLSNPt 447 (589)
.|++|=+.+.+ |- +-+++.+.+.+++...+++-.|||.
T Consensus 70 -aDivvitag~~~~~g~sR~~ll~~N~~i~~~~~~~i~~~~p~~~vivvtNPv 121 (141)
T PF00056_consen 70 -ADIVVITAGVPRKPGMSRLDLLEANAKIVKEIAKKIAKYAPDAIVIVVTNPV 121 (141)
T ss_dssp -ESEEEETTSTSSSTTSSHHHHHHHHHHHHHHHHHHHHHHSTTSEEEE-SSSH
T ss_pred -ccEEEEeccccccccccHHHHHHHhHhHHHHHHHHHHHhCCccEEEEeCCcH
Confidence 89888555543 21 2346778888999999999999997
No 72
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated
Probab=91.74 E-value=0.41 Score=51.62 Aligned_cols=38 Identities=26% Similarity=0.385 Sum_probs=33.2
Q ss_pred CCCCCceEEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEccc
Q 007802 325 GTLADQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSK 373 (589)
Q Consensus 325 ~~l~d~riv~~GAGsAg~GiA~ll~~~~~~~~G~s~eeA~~~i~~vD~~ 373 (589)
.+|++.||+++|+|..|..||..|+.+ |+ ++|.++|.+
T Consensus 131 ~~l~~~~VlvvG~GG~Gs~ia~~La~~-----Gv------g~i~lvD~d 168 (376)
T PRK08762 131 RRLLEARVLLIGAGGLGSPAALYLAAA-----GV------GTLGIVDHD 168 (376)
T ss_pred HHHhcCcEEEECCCHHHHHHHHHHHHc-----CC------CeEEEEeCC
Confidence 367889999999999999999999764 76 789999987
No 73
>PRK14027 quinate/shikimate dehydrogenase; Provisional
Probab=91.71 E-value=0.37 Score=50.39 Aligned_cols=57 Identities=18% Similarity=0.211 Sum_probs=43.0
Q ss_pred CceeccCCCchHHHHHHHHHHHHHHhCCCCCCceEEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEccc
Q 007802 298 HLVFNDDIQGTASVVLAGILSALKLVGGTLADQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSK 373 (589)
Q Consensus 298 ~~~FnDDiQGTaaV~lAgll~Alr~~g~~l~d~riv~~GAGsAg~GiA~ll~~~~~~~~G~s~eeA~~~i~~vD~~ 373 (589)
.+=+|-|- .|++.+++..+..+++.+++++|||-||-+|+-.|.+ .|. ++|+++|+.
T Consensus 104 l~G~NTD~--------~Gf~~~L~~~~~~~~~k~vlilGaGGaarAi~~aL~~-----~g~------~~i~i~nR~ 160 (283)
T PRK14027 104 TTGHNTDV--------SGFGRGMEEGLPNAKLDSVVQVGAGGVGNAVAYALVT-----HGV------QKLQVADLD 160 (283)
T ss_pred EEEEcCCH--------HHHHHHHHhcCcCcCCCeEEEECCcHHHHHHHHHHHH-----CCC------CEEEEEcCC
Confidence 45556664 4577777755557889999999999999998877654 365 689999984
No 74
>PLN02928 oxidoreductase family protein
Probab=91.71 E-value=2.2 Score=45.84 Aligned_cols=139 Identities=14% Similarity=0.175 Sum_probs=86.4
Q ss_pred CchHHHHHHHHHHHHHH----------------hCCCCCCceEEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeEEE
Q 007802 306 QGTASVVLAGILSALKL----------------VGGTLADQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWL 369 (589)
Q Consensus 306 QGTaaV~lAgll~Alr~----------------~g~~l~d~riv~~GAGsAg~GiA~ll~~~~~~~~G~s~eeA~~~i~~ 369 (589)
+.+|--+++.+|+.+|- .+..|.++++.|+|.|..|..+|+.+... |+ +|+.
T Consensus 120 ~~vAE~av~l~L~~~R~~~~~~~~~~~~~w~~~~~~~l~gktvGIiG~G~IG~~vA~~l~af-----G~-------~V~~ 187 (347)
T PLN02928 120 ASCAEMAIYLMLGLLRKQNEMQISLKARRLGEPIGDTLFGKTVFILGYGAIGIELAKRLRPF-----GV-------KLLA 187 (347)
T ss_pred HHHHHHHHHHHHHHHhCHHHHHHHHHcCCcccccccCCCCCEEEEECCCHHHHHHHHHHhhC-----CC-------EEEE
Confidence 34566677777776663 24579999999999999999999998642 64 5778
Q ss_pred EcccCcccCCcccCCchhc----hhhhcccCCCCCHHHHHhccCCcEEEeec----CCCCCCCHHHHHHHHcCCCCcEEE
Q 007802 370 VDSKGLIVSSRKESLQHFK----KPWAHEHAPIKSLLDAVKAIKPTMLMGTS----GVGKTFTKEVVEAMASFNEKPVIF 441 (589)
Q Consensus 370 vD~~GLv~~~r~~~l~~~k----~~fa~~~~~~~~L~e~V~~vkPtvLIG~S----~~~g~Fteevv~~Ma~~~erPIIF 441 (589)
+|+.. .......+. .+ ..+........+|.|+++. .|+++-.- ...+.|+++.+..|. +..+|.
T Consensus 188 ~dr~~--~~~~~~~~~-~~~~~~~~~~~~~~~~~~L~ell~~--aDiVvl~lPlt~~T~~li~~~~l~~Mk---~ga~lI 259 (347)
T PLN02928 188 TRRSW--TSEPEDGLL-IPNGDVDDLVDEKGGHEDIYEFAGE--ADIVVLCCTLTKETAGIVNDEFLSSMK---KGALLV 259 (347)
T ss_pred ECCCC--Chhhhhhhc-cccccccccccccCcccCHHHHHhh--CCEEEECCCCChHhhcccCHHHHhcCC---CCeEEE
Confidence 88752 110000000 00 0111111134689999987 89998652 224799999999995 566777
Q ss_pred ecCCCCCCCCCCHHHHhcc--ccCcEEEe
Q 007802 442 ALSNPTSQSECTAEEAYTW--SKGQAIFA 468 (589)
Q Consensus 442 aLSNPt~~~E~t~eda~~w--T~GraifA 468 (589)
=.|. .++--|+|+-- ..|+.-.|
T Consensus 260 NvaR----G~lVde~AL~~AL~~g~i~gA 284 (347)
T PLN02928 260 NIAR----GGLLDYDAVLAALESGHLGGL 284 (347)
T ss_pred ECCC----ccccCHHHHHHHHHcCCeeEE
Confidence 6665 44544444321 35665544
No 75
>PRK12548 shikimate 5-dehydrogenase; Provisional
Probab=91.68 E-value=0.49 Score=49.31 Aligned_cols=58 Identities=28% Similarity=0.287 Sum_probs=43.1
Q ss_pred CCceeccCCCchHHHHHHHHHHHHHHhCCCCCCceEEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEccc
Q 007802 297 SHLVFNDDIQGTASVVLAGILSALKLVGGTLADQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSK 373 (589)
Q Consensus 297 ~~~~FnDDiQGTaaV~lAgll~Alr~~g~~l~d~riv~~GAGsAg~GiA~ll~~~~~~~~G~s~eeA~~~i~~vD~~ 373 (589)
++.=+|-| ..|++.+++..+..++++++||+|||-+|.+||..+.. .|. ++|+++|+.
T Consensus 102 ~l~G~NTD--------~~G~~~~l~~~~~~~~~k~vlI~GAGGagrAia~~La~-----~G~------~~V~I~~R~ 159 (289)
T PRK12548 102 KLTGHITD--------GLGFVRNLREHGVDVKGKKLTVIGAGGAATAIQVQCAL-----DGA------KEITIFNIK 159 (289)
T ss_pred EEEEEecC--------HHHHHHHHHhcCCCcCCCEEEEECCcHHHHHHHHHHHH-----CCC------CEEEEEeCC
Confidence 45567777 45678888877778899999999999777766655543 365 679999874
No 76
>PTZ00325 malate dehydrogenase; Provisional
Probab=91.58 E-value=1 Score=48.05 Aligned_cols=107 Identities=22% Similarity=0.269 Sum_probs=68.6
Q ss_pred CCCceEEEeCc-ChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEcccCcccCCcccCCchhchhh-hcccCCCCCHHHH
Q 007802 327 LADQTFLFLGA-GEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLIVSSRKESLQHFKKPW-AHEHAPIKSLLDA 404 (589)
Q Consensus 327 l~d~riv~~GA-GsAg~GiA~ll~~~~~~~~G~s~eeA~~~i~~vD~~GLv~~~r~~~l~~~k~~f-a~~~~~~~~L~e~ 404 (589)
++-.||+|.|| |..|..+|..|+. .|+ ...+.|+|.+ .. ++-.-+|.+....+ -+...+..+..++
T Consensus 6 ~~~~KI~IiGaaG~VGs~~a~~l~~-----~~~-----~~elvL~Di~-~~-~g~a~Dl~~~~~~~~v~~~td~~~~~~~ 73 (321)
T PTZ00325 6 LKMFKVAVLGAAGGIGQPLSLLLKQ-----NPH-----VSELSLYDIV-GA-PGVAADLSHIDTPAKVTGYADGELWEKA 73 (321)
T ss_pred CCCCEEEEECCCCHHHHHHHHHHhc-----CCC-----CCEEEEEecC-CC-cccccchhhcCcCceEEEecCCCchHHH
Confidence 45569999999 9999999987652 243 3679999993 21 11111232211110 0011111234788
Q ss_pred HhccCCcEEEeecCCCCC--------------CCHHHHHHHHcCCCCcEEEecCCCC
Q 007802 405 VKAIKPTMLMGTSGVGKT--------------FTKEVVEAMASFNEKPVIFALSNPT 447 (589)
Q Consensus 405 V~~vkPtvLIG~S~~~g~--------------Fteevv~~Ma~~~erPIIFaLSNPt 447 (589)
++. .|++|=+.+.+.. ..++++++|.+++.+.||+.-|||.
T Consensus 74 l~g--aDvVVitaG~~~~~~~tR~dll~~N~~i~~~i~~~i~~~~~~~iviv~SNPv 128 (321)
T PTZ00325 74 LRG--ADLVLICAGVPRKPGMTRDDLFNTNAPIVRDLVAAVASSAPKAIVGIVSNPV 128 (321)
T ss_pred hCC--CCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcH
Confidence 886 8888755555322 4568899999999999999999999
No 77
>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB. This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).
Probab=91.54 E-value=0.54 Score=47.96 Aligned_cols=104 Identities=17% Similarity=0.273 Sum_probs=60.5
Q ss_pred CCCCCceEEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEcccCcccCCcccCCchhchhhhccc---CCCCCH
Q 007802 325 GTLADQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLIVSSRKESLQHFKKPWAHEH---APIKSL 401 (589)
Q Consensus 325 ~~l~d~riv~~GAGsAg~GiA~ll~~~~~~~~G~s~eeA~~~i~~vD~~GLv~~~r~~~l~~~k~~fa~~~---~~~~~L 401 (589)
.+|++.||+++|+|..|.-+|..|+.+ |+ ++|.++|.+=+ .. .+|+.+- .|.... .....+
T Consensus 20 ~~L~~~~VlvvG~GglGs~va~~La~~-----Gv------g~i~lvD~D~v-e~---sNL~RQ~-l~~~~diG~~Ka~~a 83 (240)
T TIGR02355 20 EALKASRVLIVGLGGLGCAASQYLAAA-----GV------GNLTLLDFDTV-SL---SNLQRQV-LHSDANIGQPKVESA 83 (240)
T ss_pred HHHhCCcEEEECcCHHHHHHHHHHHHc-----CC------CEEEEEeCCcc-cc---cCcccce-eeeHhhCCCcHHHHH
Confidence 468899999999999999999999764 76 78999999822 21 1344221 111111 111245
Q ss_pred HHHHhccCCcEEEeecCCCCCCCHHHHHHHHcCCCCcEEE-ecCCCCC
Q 007802 402 LDAVKAIKPTMLMGTSGVGKTFTKEVVEAMASFNEKPVIF-ALSNPTS 448 (589)
Q Consensus 402 ~e~V~~vkPtvLIG~S~~~g~Fteevv~~Ma~~~erPIIF-aLSNPt~ 448 (589)
.+.++...|++-|-.-. ..++++-+...-+ +--+|+ +.-||.+
T Consensus 84 ~~~l~~inp~v~i~~~~--~~i~~~~~~~~~~--~~DlVvd~~D~~~~ 127 (240)
T TIGR02355 84 KDALTQINPHIAINPIN--AKLDDAELAALIA--EHDIVVDCTDNVEV 127 (240)
T ss_pred HHHHHHHCCCcEEEEEe--ccCCHHHHHHHhh--cCCEEEEcCCCHHH
Confidence 66666677776665432 2355543333221 222444 5566553
No 78
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).
Probab=91.53 E-value=0.62 Score=46.72 Aligned_cols=104 Identities=21% Similarity=0.241 Sum_probs=62.3
Q ss_pred CCCCCceEEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEcccCcccCCcccCCchhchhhhcccC---CCCCH
Q 007802 325 GTLADQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLIVSSRKESLQHFKKPWAHEHA---PIKSL 401 (589)
Q Consensus 325 ~~l~d~riv~~GAGsAg~GiA~ll~~~~~~~~G~s~eeA~~~i~~vD~~GLv~~~r~~~l~~~k~~fa~~~~---~~~~L 401 (589)
.+|++.||+|+|+|..|.-+|+.|+.+ |+ ++|.++|.+= |.. .+|+.+- -|..++- ....+
T Consensus 17 ~~L~~~~VlivG~GglGs~va~~La~~-----Gv------g~i~lvD~D~-ve~---sNL~Rq~-l~~~~diG~~Ka~~~ 80 (228)
T cd00757 17 EKLKNARVLVVGAGGLGSPAAEYLAAA-----GV------GKLGLVDDDV-VEL---SNLQRQI-LHTEADVGQPKAEAA 80 (228)
T ss_pred HHHhCCcEEEECCCHHHHHHHHHHHHc-----CC------CEEEEEcCCE-EcC---ccccccc-ccChhhCCChHHHHH
Confidence 478899999999999999999999764 76 7899999982 222 1354322 1221111 11357
Q ss_pred HHHHhccCCcEEEeecCCCCCCCHHHHHHHHcCCCCcEEEecCCCC
Q 007802 402 LDAVKAIKPTMLMGTSGVGKTFTKEVVEAMASFNEKPVIFALSNPT 447 (589)
Q Consensus 402 ~e~V~~vkPtvLIG~S~~~g~Fteevv~~Ma~~~erPIIFaLSNPt 447 (589)
.+.++...|++=|=... .-++++-+...-+.. .=||-++-||.
T Consensus 81 ~~~l~~~np~~~i~~~~--~~i~~~~~~~~~~~~-DvVi~~~d~~~ 123 (228)
T cd00757 81 AERLRAINPDVEIEAYN--ERLDAENAEELIAGY-DLVLDCTDNFA 123 (228)
T ss_pred HHHHHHhCCCCEEEEec--ceeCHHHHHHHHhCC-CEEEEcCCCHH
Confidence 77777778875443222 234554444432222 22444666765
No 79
>COG0578 GlpA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=91.52 E-value=1.2 Score=50.80 Aligned_cols=162 Identities=21% Similarity=0.213 Sum_probs=106.5
Q ss_pred CCceEEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEcccCcc--cCCcccCCchhchhhhcccCCCCCHHHHH
Q 007802 328 ADQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLI--VSSRKESLQHFKKPWAHEHAPIKSLLDAV 405 (589)
Q Consensus 328 ~d~riv~~GAGsAg~GiA~ll~~~~~~~~G~s~eeA~~~i~~vD~~GLv--~~~r~~~l~~~k~~fa~~~~~~~~L~e~V 405 (589)
.+--++|+|.|..|+|||.-+.. .|+ ++.||+++-+- |++|..+|-+.-..|+.. .+..=..|++
T Consensus 11 ~~~DviVIGGGitG~GiArDaA~-----RGl-------~v~LvE~~D~AsGTSsrstkLiHGGlRYl~~-~e~~lvrEal 77 (532)
T COG0578 11 EEFDVIVIGGGITGAGIARDAAG-----RGL-------KVALVEKGDLASGTSSRSTKLIHGGLRYLEQ-YEFSLVREAL 77 (532)
T ss_pred cCCCEEEECCchhhHHHHHHHHh-----CCC-------eEEEEecCcccCcccCccccCccchhhhhhh-cchHHHHHHH
Confidence 55678999999999999997755 387 48899988776 455555566656666643 1222134555
Q ss_pred hccCCcEEEeecCCCCCCCHHHHHHHHcCC--CCcEEEecCCCCCCCCCCHHHHhccccCcEEEeeCCCCCcceeCCeee
Q 007802 406 KAIKPTMLMGTSGVGKTFTKEVVEAMASFN--EKPVIFALSNPTSQSECTAEEAYTWSKGQAIFASGSPFDPVEYNGKVF 483 (589)
Q Consensus 406 ~~vkPtvLIG~S~~~g~Fteevv~~Ma~~~--erPIIFaLSNPt~~~E~t~eda~~wT~GraifAsGSPf~pv~~~G~~~ 483 (589)
.. .+++..+|-|+ +.|.+||..+=+ ++
T Consensus 78 ~E-----------------r~vL~~~APH~v~p~~~~lp~~~~~-------~~--------------------------- 106 (532)
T COG0578 78 AE-----------------REVLLRIAPHLVEPLPFLLPHLPGL-------RD--------------------------- 106 (532)
T ss_pred HH-----------------HHHHHHhCccccccCcCeEeccCCc-------cc---------------------------
Confidence 43 47888888776 445666665421 01
Q ss_pred CCCCccccccchhhhHHHHHhCC-cccC--HHHHHHHHHHHHhccCcccCCCCCccCCCCCchhhHHHHHHHHHHHHHHc
Q 007802 484 VPGQGNNAYIFPGLGLGLIISGA-IRVR--DEMLLAASEALAAQVTQEHFDKGLIYPPFTNIRKISAHIAAKVAAKAYDL 560 (589)
Q Consensus 484 ~p~Q~NN~~iFPGiglG~~~~~a-~~It--d~m~~aAA~aLA~~v~~~~l~~g~l~P~l~~ireVs~~VA~aVa~~A~~~ 560 (589)
-.+++.|+.+...+++. +..+ ..+...++..+.-.+.++-+..+-.||.-.- .+ .+...++++.|.+.
T Consensus 107 ------~~~~~~gl~lyd~lag~~~~~p~~~~~~~~~~~~~~P~l~~~~l~ga~~y~D~~v-dd--aRLv~~~a~~A~~~ 177 (532)
T COG0578 107 ------AWLIRAGLFLYDHLAGIRKLLPASRVLDPKEALPLEPALKKDGLKGAFRYPDGVV-DD--ARLVAANARDAAEH 177 (532)
T ss_pred ------chHHHHHHHHHHHhhcccccCCcceecchhhhhhcCcccchhhccceEEEcccee-ch--HHHHHHHHHHHHhc
Confidence 25678899999999993 3332 2222335666666666666655788887653 22 26677889999988
Q ss_pred CC
Q 007802 561 GL 562 (589)
Q Consensus 561 Gv 562 (589)
|-
T Consensus 178 Ga 179 (532)
T COG0578 178 GA 179 (532)
T ss_pred cc
Confidence 84
No 80
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=91.49 E-value=1.1 Score=50.84 Aligned_cols=167 Identities=15% Similarity=0.198 Sum_probs=88.7
Q ss_pred cccccCcccccccccCCChhhHHHHHHHHHHHHHHhcCCceeeEeecCCCccHHHHHHHHcCCCcee--ccCCCchHHHH
Q 007802 235 EQLLNDEFYIGLRQKRATGQEYAELLQEFMTAVKQNYGEKVLIQFEDFANHNAFELLSKYSSSHLVF--NDDIQGTASVV 312 (589)
Q Consensus 235 ~~LL~Dp~YlG~r~~R~~g~~y~~fidefv~av~~~fGp~~lIq~EDf~~~~Af~iL~ryr~~~~~F--nDDiQGTaaV~ 312 (589)
+.|.++-.++|+-|+--. . |.++++.++ .=++|-+|.+-. + +|- .++.+| +.-|.|-.+|.
T Consensus 80 ~~l~~g~tli~~l~p~~n----~----~ll~~l~~k--~it~ia~E~vpr-----i-sra-q~~d~lssma~iAGy~Avi 142 (511)
T TIGR00561 80 AELPAGKALVSFIWPAQN----P----ELMEKLAAK--NITVLAMDAVPR-----I-SRA-QKLDALSSMANIAGYRAII 142 (511)
T ss_pred HhcCCCCEEEEEcCccCC----H----HHHHHHHHc--CCEEEEeecccc-----c-ccC-CccCcchhhHHHHHHHHHH
Confidence 456667778888776432 2 333333332 235677775531 0 111 122233 24566666666
Q ss_pred HHHHHHHHHHhC-----CCCCCceEEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEcccCcccCCcccCCch-
Q 007802 313 LAGILSALKLVG-----GTLADQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLIVSSRKESLQH- 386 (589)
Q Consensus 313 lAgll~Alr~~g-----~~l~d~riv~~GAGsAg~GiA~ll~~~~~~~~G~s~eeA~~~i~~vD~~GLv~~~r~~~l~~- 386 (589)
.|+-.-.-..+| ......|++++|+|.+|+..+..+.. .|. ++..+|.+.-.. .+-..+..
T Consensus 143 ~Aa~~lgr~~~g~~taag~vp~akVlViGaG~iGl~Aa~~ak~-----lGA-------~V~v~d~~~~rl-e~a~~lGa~ 209 (511)
T TIGR00561 143 EAAHEFGRFFTGQITAAGKVPPAKVLVIGAGVAGLAAIGAANS-----LGA-------IVRAFDTRPEVK-EQVQSMGAE 209 (511)
T ss_pred HHHHHhhhhcCCceecCCCCCCCEEEEECCCHHHHHHHHHHHH-----CCC-------EEEEEeCCHHHH-HHHHHcCCe
Confidence 654333322222 13457899999999999998876654 252 377777764311 00000100
Q ss_pred -----------hchhhhcccCCC------CCHHHHHhccCCcEEEeecCCCC-----CCCHHHHHHHHc
Q 007802 387 -----------FKKPWAHEHAPI------KSLLDAVKAIKPTMLMGTSGVGK-----TFTKEVVEAMAS 433 (589)
Q Consensus 387 -----------~k~~fa~~~~~~------~~L~e~V~~vkPtvLIG~S~~~g-----~Fteevv~~Ma~ 433 (589)
...-||+...+. .-+.|.++. .|++|++.-++| +.|++.++.|..
T Consensus 210 ~v~v~~~e~g~~~~gYa~~~s~~~~~~~~~~~~e~~~~--~DIVI~TalipG~~aP~Lit~emv~~MKp 276 (511)
T TIGR00561 210 FLELDFKEEGGSGDGYAKVMSEEFIAAEMELFAAQAKE--VDIIITTALIPGKPAPKLITEEMVDSMKA 276 (511)
T ss_pred EEeccccccccccccceeecCHHHHHHHHHHHHHHhCC--CCEEEECcccCCCCCCeeehHHHHhhCCC
Confidence 001122211000 114455554 999999994444 589999999974
No 81
>PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=91.11 E-value=0.93 Score=48.21 Aligned_cols=92 Identities=14% Similarity=0.251 Sum_probs=73.5
Q ss_pred HHHHHHHHHHHHHHhCCCCCCceEEEeCcC-hHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEcccCcccCCcccCCchh
Q 007802 309 ASVVLAGILSALKLVGGTLADQTFLFLGAG-EAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLIVSSRKESLQHF 387 (589)
Q Consensus 309 aaV~lAgll~Alr~~g~~l~d~riv~~GAG-sAg~GiA~ll~~~~~~~~G~s~eeA~~~i~~vD~~GLv~~~r~~~l~~~ 387 (589)
.-+|-.|++.=++-.|.+|++++|+|+|.| ..|..+|.+|... | ..+++++++ .
T Consensus 139 ~PcTp~aii~lL~~~~i~l~Gk~V~vIG~s~ivG~PmA~~L~~~-----g-------atVtv~~~~--------t----- 193 (301)
T PRK14194 139 TPCTPSGCLRLLEDTCGDLTGKHAVVIGRSNIVGKPMAALLLQA-----H-------CSVTVVHSR--------S----- 193 (301)
T ss_pred CCCcHHHHHHHHHHhCCCCCCCEEEEECCCCccHHHHHHHHHHC-----C-------CEEEEECCC--------C-----
Confidence 466788889999999999999999999996 9999999999752 5 346666653 0
Q ss_pred chhhhcccCCCCCHHHHHhccCCcEEEeecCCCCCCCHHHHHHHHcCCCCcEEEecC
Q 007802 388 KKPWAHEHAPIKSLLDAVKAIKPTMLMGTSGVGKTFTKEVVEAMASFNEKPVIFALS 444 (589)
Q Consensus 388 k~~fa~~~~~~~~L~e~V~~vkPtvLIG~S~~~g~Fteevv~~Ma~~~erPIIFaLS 444 (589)
+++.|++++ .|++|=+-+.++.+++++++ +.-||.=.|
T Consensus 194 -----------~~l~e~~~~--ADIVIsavg~~~~v~~~~ik------~GaiVIDvg 231 (301)
T PRK14194 194 -----------TDAKALCRQ--ADIVVAAVGRPRLIDADWLK------PGAVVIDVG 231 (301)
T ss_pred -----------CCHHHHHhc--CCEEEEecCChhcccHhhcc------CCcEEEEec
Confidence 168899987 99999999989888888744 455666665
No 82
>PRK00066 ldh L-lactate dehydrogenase; Reviewed
Probab=90.97 E-value=0.52 Score=49.93 Aligned_cols=126 Identities=15% Similarity=0.254 Sum_probs=76.6
Q ss_pred CceEEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEcccCcccCCcccCCchhchhhhcc-cCCCCCHHHHHhc
Q 007802 329 DQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLIVSSRKESLQHFKKPWAHE-HAPIKSLLDAVKA 407 (589)
Q Consensus 329 d~riv~~GAGsAg~GiA~ll~~~~~~~~G~s~eeA~~~i~~vD~~GLv~~~r~~~l~~~k~~fa~~-~~~~~~L~e~V~~ 407 (589)
..||.|+|||..|..+|-+|+. .|+ ...|.|+|.+-=..++-.-+|.+.. +|-+. .-..++. +.+++
T Consensus 6 ~~ki~iiGaG~vG~~~a~~l~~-----~~~-----~~el~L~D~~~~~~~g~~~Dl~~~~-~~~~~~~i~~~~~-~~~~~ 73 (315)
T PRK00066 6 HNKVVLVGDGAVGSSYAYALVN-----QGI-----ADELVIIDINKEKAEGDAMDLSHAV-PFTSPTKIYAGDY-SDCKD 73 (315)
T ss_pred CCEEEEECCCHHHHHHHHHHHh-----cCC-----CCEEEEEeCCCchhHHHHHHHHhhc-cccCCeEEEeCCH-HHhCC
Confidence 3599999999999999998764 365 2679999974211111111132222 22111 0011344 44665
Q ss_pred cCCcEEEeecCCCCC--------------CCHHHHHHHHcCCCCcEEEecCCCCCCCCCCHHHHhccc--cCcEEEeeCC
Q 007802 408 IKPTMLMGTSGVGKT--------------FTKEVVEAMASFNEKPVIFALSNPTSQSECTAEEAYTWS--KGQAIFASGS 471 (589)
Q Consensus 408 vkPtvLIG~S~~~g~--------------Fteevv~~Ma~~~erPIIFaLSNPt~~~E~t~eda~~wT--~GraifAsGS 471 (589)
.|++|=+.+.+.. .=+++++.|.+++...+|+-.|||. +....-+++++ +-+=+|++|.
T Consensus 74 --adivIitag~~~k~g~~R~dll~~N~~i~~~i~~~i~~~~~~~~vivvsNP~---d~~~~~~~k~sg~p~~~viG~gt 148 (315)
T PRK00066 74 --ADLVVITAGAPQKPGETRLDLVEKNLKIFKSIVGEVMASGFDGIFLVASNPV---DILTYATWKLSGFPKERVIGSGT 148 (315)
T ss_pred --CCEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEccCcH---HHHHHHHHHHhCCCHHHEeecCc
Confidence 8999877665421 1156788899999999999999998 34444555554 2223556654
No 83
>PRK14189 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=90.83 E-value=0.97 Score=47.73 Aligned_cols=84 Identities=18% Similarity=0.312 Sum_probs=68.0
Q ss_pred hHHHHHHHHHHHHHHhCCCCCCceEEEeCcChH-HHHHHHHHHHHHHhccCCCHHhhcCeEEEEcccCcccCCcccCCch
Q 007802 308 TASVVLAGILSALKLVGGTLADQTFLFLGAGEA-GTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLIVSSRKESLQH 386 (589)
Q Consensus 308 TaaV~lAgll~Alr~~g~~l~d~riv~~GAGsA-g~GiA~ll~~~~~~~~G~s~eeA~~~i~~vD~~GLv~~~r~~~l~~ 386 (589)
-.-+|-.|++.-++-.+.++++++++++|.|.- |.-+|.+|.. .|. .+.+|+++
T Consensus 137 ~~PcTp~aii~lL~~~~i~l~Gk~vvViGrs~iVGkPla~lL~~-----~~a-------tVt~~hs~------------- 191 (285)
T PRK14189 137 FRPCTPYGVMKMLESIGIPLRGAHAVVIGRSNIVGKPMAMLLLQ-----AGA-------TVTICHSK------------- 191 (285)
T ss_pred CcCCCHHHHHHHHHHcCCCCCCCEEEEECCCCccHHHHHHHHHH-----CCC-------EEEEecCC-------------
Confidence 456778899999999999999999999999998 9999998864 253 45555432
Q ss_pred hchhhhcccCCCCCHHHHHhccCCcEEEeecCCCCCCCHHHHH
Q 007802 387 FKKPWAHEHAPIKSLLDAVKAIKPTMLMGTSGVGKTFTKEVVE 429 (589)
Q Consensus 387 ~k~~fa~~~~~~~~L~e~V~~vkPtvLIG~S~~~g~Fteevv~ 429 (589)
.++|.+.+++ +|++|-..+.++.|+.++++
T Consensus 192 -----------t~~l~~~~~~--ADIVV~avG~~~~i~~~~ik 221 (285)
T PRK14189 192 -----------TRDLAAHTRQ--ADIVVAAVGKRNVLTADMVK 221 (285)
T ss_pred -----------CCCHHHHhhh--CCEEEEcCCCcCccCHHHcC
Confidence 1357788886 99999999999999998776
No 84
>PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated
Probab=90.80 E-value=0.45 Score=51.79 Aligned_cols=38 Identities=21% Similarity=0.300 Sum_probs=33.8
Q ss_pred CCCCCceEEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEccc
Q 007802 325 GTLADQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSK 373 (589)
Q Consensus 325 ~~l~d~riv~~GAGsAg~GiA~ll~~~~~~~~G~s~eeA~~~i~~vD~~ 373 (589)
++|++.||+++|+|..|.-+|..|+.+ |+ ++|.++|.+
T Consensus 38 ~~L~~~~VlviG~GGlGs~va~~La~~-----Gv------g~i~lvD~D 75 (392)
T PRK07878 38 KRLKNARVLVIGAGGLGSPTLLYLAAA-----GV------GTLGIVEFD 75 (392)
T ss_pred HHHhcCCEEEECCCHHHHHHHHHHHHc-----CC------CeEEEECCC
Confidence 578899999999999999999999764 76 789999987
No 85
>cd05197 GH4_glycoside_hydrolases Glycoside Hydrases Family 4. Glycoside hydrolases cleave glycosidic bonds to release smaller sugars from oligo- or polysaccharides. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by GH4 glycoside hydrolases. Other organisms (such as archaea and Thermotoga maritima) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. GH4 family members include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. They require two cofactors, NAD+ and a divalent metal (Mn2+, Ni2+, Mg2+), for activity. Some also require reducing conditions. GH4 glycoside hydrolases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families in
Probab=90.75 E-value=0.64 Score=51.42 Aligned_cols=105 Identities=18% Similarity=0.309 Sum_probs=66.6
Q ss_pred ceEEEeCcChHHHHHHHHHHHHHHhcc-CCCHHhhcCeEEEEcccCcccCCcccCCchhchhhhcc-cCC-----CCCHH
Q 007802 330 QTFLFLGAGEAGTGIAELIALEMSKQT-KAPIEEARKKIWLVDSKGLIVSSRKESLQHFKKPWAHE-HAP-----IKSLL 402 (589)
Q Consensus 330 ~riv~~GAGsAg~GiA~ll~~~~~~~~-G~s~eeA~~~i~~vD~~GLv~~~r~~~l~~~k~~fa~~-~~~-----~~~L~ 402 (589)
.||+|+||||+ -...|+..+.+.. .++ .+.|||+|-+ .+|-+.+...-+.+++. ..+ ..++.
T Consensus 1 ~KI~iIGgGS~---~tp~li~~l~~~~~~l~----~~ei~L~Did----~~Rl~~v~~l~~~~~~~~g~~~~v~~ttD~~ 69 (425)
T cd05197 1 VKIAIIGGGSS---FTPELVSGLLKTPEELP----ISEVTLYDID----EERLDIILTIAKRYVEEVGADIKFEKTMDLE 69 (425)
T ss_pred CEEEEECCchH---hHHHHHHHHHcChhhCC----CCEEEEEcCC----HHHHHHHHHHHHHHHHhhCCCeEEEEeCCHH
Confidence 38999999995 5555555554322 342 4789999976 34422122222222222 112 25788
Q ss_pred HHHhccCCcEEEeecCC--------------------------CCCCC--------HHHHHHHHcCCCCcEEEecCCCC
Q 007802 403 DAVKAIKPTMLMGTSGV--------------------------GKTFT--------KEVVEAMASFNEKPVIFALSNPT 447 (589)
Q Consensus 403 e~V~~vkPtvLIG~S~~--------------------------~g~Ft--------eevv~~Ma~~~erPIIFaLSNPt 447 (589)
||++. +|.+|-.-.+ ||.|. .++++.|.++|...+|+-.|||.
T Consensus 70 ~Al~g--ADfVi~~irvGg~~~r~~De~Iplk~G~~gqeT~G~GG~~~alrni~ii~~i~~~i~~~~P~a~lin~TNP~ 146 (425)
T cd05197 70 DAIID--ADFVINQFRVGGLTYREKDEQIPLKYGVIGQETVGPGGTFSGLRQIPYVLDIARKXEKLSPDAWYLNFTNPA 146 (425)
T ss_pred HHhCC--CCEEEEeeecCChHHHHHHHhHHHHcCcccccccCcchhhhhhhhHHHHHHHHHHHHHhCCCcEEEecCChH
Confidence 88887 7776643333 34333 38999999999999999999998
No 86
>PTZ00082 L-lactate dehydrogenase; Provisional
Probab=90.72 E-value=0.98 Score=48.04 Aligned_cols=124 Identities=17% Similarity=0.258 Sum_probs=73.4
Q ss_pred CceEEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEcccCcccCCcccCCchhchhhhccc---CCCCCHHHHH
Q 007802 329 DQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLIVSSRKESLQHFKKPWAHEH---APIKSLLDAV 405 (589)
Q Consensus 329 d~riv~~GAGsAg~GiA~ll~~~~~~~~G~s~eeA~~~i~~vD~~GLv~~~r~~~l~~~k~~fa~~~---~~~~~L~e~V 405 (589)
-.||.|+|||..|.++|.+++. .|+ ..+.|+|.+-=...+..-++.+. ..+.... ....++ +++
T Consensus 6 ~~KI~IIGaG~vG~~ia~~la~-----~gl------~~i~LvDi~~~~~~~~~ld~~~~-~~~~~~~~~I~~~~d~-~~l 72 (321)
T PTZ00082 6 RRKISLIGSGNIGGVMAYLIVL-----KNL------GDVVLFDIVKNIPQGKALDISHS-NVIAGSNSKVIGTNNY-EDI 72 (321)
T ss_pred CCEEEEECCCHHHHHHHHHHHh-----CCC------CeEEEEeCCCchhhHHHHHHHhh-hhccCCCeEEEECCCH-HHh
Confidence 3699999999999999997653 366 23999997532222111011111 1111111 112456 566
Q ss_pred hccCCcEEEeecCCCCCC-------------------CHHHHHHHHcCCCCcEEEecCCCCCCCCCCHHHHhcccc--Cc
Q 007802 406 KAIKPTMLMGTSGVGKTF-------------------TKEVVEAMASFNEKPVIFALSNPTSQSECTAEEAYTWSK--GQ 464 (589)
Q Consensus 406 ~~vkPtvLIG~S~~~g~F-------------------teevv~~Ma~~~erPIIFaLSNPt~~~E~t~eda~~wT~--Gr 464 (589)
+. .|++|=+.+.++-- -.++++.|.+++..-+++--|||.+ .....+++.+. -+
T Consensus 73 ~~--aDiVI~tag~~~~~~~~~~~~~r~~~l~~n~~i~~~i~~~i~~~~p~a~~iv~sNP~d---i~t~~~~~~sg~p~~ 147 (321)
T PTZ00082 73 AG--SDVVIVTAGLTKRPGKSDKEWNRDDLLPLNAKIMDEVAEGIKKYCPNAFVIVITNPLD---VMVKLLQEHSGLPKN 147 (321)
T ss_pred CC--CCEEEECCCCCCCCCCCcCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcHH---HHHHHHHHhcCCChh
Confidence 65 89998665554321 2478888999998779999999982 22333444432 12
Q ss_pred EEEeeC
Q 007802 465 AIFASG 470 (589)
Q Consensus 465 aifAsG 470 (589)
-+|++|
T Consensus 148 rviGlg 153 (321)
T PTZ00082 148 KVCGMA 153 (321)
T ss_pred hEEEec
Confidence 356665
No 87
>cd01079 NAD_bind_m-THF_DH NAD binding domain of methylene-tetrahydrofolate dehydrogenase. The NAD-binding domain of methylene-tetrahydrofolate dehydrogenase (m-THF DH). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. M-THF DH is a component of an unusual monofunctional enzyme; in eukaryotes, m-THF DH is typically found as part of a multifunctional protein. NADP-dependent m-THF DHs in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofunctional DH, as well as bifunctional DH/cyclodrolase are found. In addition, yeast (S. cerevisiae) also express an monofunctional DH. This family contains only the monofunctional
Probab=90.67 E-value=1.7 Score=43.80 Aligned_cols=103 Identities=21% Similarity=0.316 Sum_probs=70.2
Q ss_pred HHHHHHHHHHHHHhC---------CCCCCceEEEeCcCh-HHHHHHHHHHHHHHhccCCCHHhhcCeEEEEcccCcccCC
Q 007802 310 SVVLAGILSALKLVG---------GTLADQTFLFLGAGE-AGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLIVSS 379 (589)
Q Consensus 310 aV~lAgll~Alr~~g---------~~l~d~riv~~GAGs-Ag~GiA~ll~~~~~~~~G~s~eeA~~~i~~vD~~GLv~~~ 379 (589)
-+|-.|++.=|+..+ .+|++++++++|-+. .|.-+|.||.. .| -.+..||++|.....
T Consensus 34 PCTp~avi~lL~~~~i~~~~~~~~~~l~GK~vvVIGrS~iVGkPla~lL~~-----~~-------AtVti~~~~~~~~~~ 101 (197)
T cd01079 34 PCTPLAIVKILEFLGIYNKILPYGNRLYGKTITIINRSEVVGRPLAALLAN-----DG-------ARVYSVDINGIQVFT 101 (197)
T ss_pred CCCHHHHHHHHHHhCCcccccccCCCCCCCEEEEECCCccchHHHHHHHHH-----CC-------CEEEEEecCcccccc
Confidence 445566666666554 489999999999765 56677776643 25 358899999988866
Q ss_pred cccCCchhchhhhcccCCCCCHHHHHhccCCcEEEeecCCCCC-CCHHHHH
Q 007802 380 RKESLQHFKKPWAHEHAPIKSLLDAVKAIKPTMLMGTSGVGKT-FTKEVVE 429 (589)
Q Consensus 380 r~~~l~~~k~~fa~~~~~~~~L~e~V~~vkPtvLIG~S~~~g~-Fteevv~ 429 (589)
+...+...+.+. ....++|.|.+++ +|++|-.-+.++. ++.|+|+
T Consensus 102 ~~~~~~hs~t~~---~~~~~~l~~~~~~--ADIVIsAvG~~~~~i~~d~ik 147 (197)
T cd01079 102 RGESIRHEKHHV---TDEEAMTLDCLSQ--SDVVITGVPSPNYKVPTELLK 147 (197)
T ss_pred cccccccccccc---cchhhHHHHHhhh--CCEEEEccCCCCCccCHHHcC
Confidence 533221111000 0011248899986 9999999999997 8999987
No 88
>PRK00257 erythronate-4-phosphate dehydrogenase; Validated
Probab=90.50 E-value=2.3 Score=46.63 Aligned_cols=157 Identities=14% Similarity=0.146 Sum_probs=97.8
Q ss_pred hHHHHHHHHHHHHHHhCCCCCCceEEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEcccCcccCCcccCCchh
Q 007802 308 TASVVLAGILSALKLVGGTLADQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLIVSSRKESLQHF 387 (589)
Q Consensus 308 TaaV~lAgll~Alr~~g~~l~d~riv~~GAGsAg~GiA~ll~~~~~~~~G~s~eeA~~~i~~vD~~GLv~~~r~~~l~~~ 387 (589)
.|=-+++.+++..|..|..|.+.++.|+|.|..|..+|+.+... |+ +++.+|... .. ..
T Consensus 95 VAE~v~~~lL~l~r~~g~~l~gktvGIIG~G~IG~~va~~l~a~-----G~-------~V~~~Dp~~------~~--~~- 153 (381)
T PRK00257 95 VVDYVLGSLLTLAEREGVDLAERTYGVVGAGHVGGRLVRVLRGL-----GW-------KVLVCDPPR------QE--AE- 153 (381)
T ss_pred HHHHHHHHHHHHhcccCCCcCcCEEEEECCCHHHHHHHHHHHHC-----CC-------EEEEECCcc------cc--cc-
Confidence 34457899999999999999999999999999999999988643 65 577788631 00 00
Q ss_pred chhhhcccCCCCCHHHHHhccCCcEEEee-c-------CCCCCCCHHHHHHHHcCCCCcEEEecCCCCCCCCCCHHHHhc
Q 007802 388 KKPWAHEHAPIKSLLDAVKAIKPTMLMGT-S-------GVGKTFTKEVVEAMASFNEKPVIFALSNPTSQSECTAEEAYT 459 (589)
Q Consensus 388 k~~fa~~~~~~~~L~e~V~~vkPtvLIG~-S-------~~~g~Fteevv~~Ma~~~erPIIFaLSNPt~~~E~t~eda~~ 459 (589)
......+|.|+++. .|+++=. . ...+.|+++.+..|. +..++.=.|. .++--++|+.
T Consensus 154 ------~~~~~~~l~ell~~--aDiV~lh~Plt~~g~~~T~~li~~~~l~~mk---~gailIN~aR----G~vVde~AL~ 218 (381)
T PRK00257 154 ------GDGDFVSLERILEE--CDVISLHTPLTKEGEHPTRHLLDEAFLASLR---PGAWLINASR----GAVVDNQALR 218 (381)
T ss_pred ------cCccccCHHHHHhh--CCEEEEeCcCCCCccccccccCCHHHHhcCC---CCeEEEECCC----CcccCHHHHH
Confidence 01123579999886 7877621 1 123799999999996 5678876665 4444454442
Q ss_pred c--ccCcEEEeeCCCC--CcceeCCeeeCCCCccccccchhhhHHHHHhC
Q 007802 460 W--SKGQAIFASGSPF--DPVEYNGKVFVPGQGNNAYIFPGLGLGLIISG 505 (589)
Q Consensus 460 w--T~GraifAsGSPf--~pv~~~G~~~~p~Q~NN~~iFPGiglG~~~~~ 505 (589)
. ..|+...|.=-=| +|. .+.... ..|..+-|=++-....++
T Consensus 219 ~aL~~g~i~~a~LDV~e~EP~-~~~~L~----~~nvi~TPHiAg~s~e~~ 263 (381)
T PRK00257 219 EALLSGEDLDAVLDVWEGEPQ-IDLELA----DLCTIATPHIAGYSLDGK 263 (381)
T ss_pred HHHHhCCCcEEEEeCCCCCCC-CChhhh----hCCEEEcCccccCCHHHH
Confidence 1 2454433211111 121 111111 137788887775554444
No 89
>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=90.47 E-value=0.52 Score=49.19 Aligned_cols=32 Identities=25% Similarity=0.330 Sum_probs=26.0
Q ss_pred ceEEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEccc
Q 007802 330 QTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSK 373 (589)
Q Consensus 330 ~riv~~GAGsAg~GiA~ll~~~~~~~~G~s~eeA~~~i~~vD~~ 373 (589)
.+|.|+|+|..|.++|..+... |. +++++|+.
T Consensus 3 ~~V~VIG~G~mG~~iA~~la~~-----G~-------~V~v~d~~ 34 (308)
T PRK06129 3 GSVAIIGAGLIGRAWAIVFARA-----GH-------EVRLWDAD 34 (308)
T ss_pred cEEEEECccHHHHHHHHHHHHC-----CC-------eeEEEeCC
Confidence 3799999999999999988763 63 57888875
No 90
>PTZ00117 malate dehydrogenase; Provisional
Probab=90.32 E-value=1.2 Score=47.32 Aligned_cols=126 Identities=19% Similarity=0.306 Sum_probs=75.9
Q ss_pred CCceEEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEcccCcccCCcccCCchhchhhhccc---CCCCCHHHH
Q 007802 328 ADQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLIVSSRKESLQHFKKPWAHEH---APIKSLLDA 404 (589)
Q Consensus 328 ~d~riv~~GAGsAg~GiA~ll~~~~~~~~G~s~eeA~~~i~~vD~~GLv~~~r~~~l~~~k~~fa~~~---~~~~~L~e~ 404 (589)
+..||.|+|||+.|.++|.+++. .|+ ..+.|+|.+-=..++..-++.+. ..+.... ....+++ +
T Consensus 4 ~~~KI~IIGaG~vG~~ia~~l~~-----~~~------~~l~L~Di~~~~~~g~~lDl~~~-~~~~~~~~~i~~~~d~~-~ 70 (319)
T PTZ00117 4 KRKKISMIGAGQIGSTVALLILQ-----KNL------GDVVLYDVIKGVPQGKALDLKHF-STLVGSNINILGTNNYE-D 70 (319)
T ss_pred CCcEEEEECCCHHHHHHHHHHHH-----CCC------CeEEEEECCCccchhHHHHHhhh-ccccCCCeEEEeCCCHH-H
Confidence 45699999999999999987754 364 24999998521111111012111 1111110 1124565 6
Q ss_pred HhccCCcEEEeecCCCCC--------------CCHHHHHHHHcCCCCcEEEecCCCCCCCCCCHHHHhcccc--CcEEEe
Q 007802 405 VKAIKPTMLMGTSGVGKT--------------FTKEVVEAMASFNEKPVIFALSNPTSQSECTAEEAYTWSK--GQAIFA 468 (589)
Q Consensus 405 V~~vkPtvLIG~S~~~g~--------------Fteevv~~Ma~~~erPIIFaLSNPt~~~E~t~eda~~wT~--GraifA 468 (589)
++. .|++|=+.+.+.. +-+++.+.|.++|..-+++=.|||.. .....+.++++ =.-+|+
T Consensus 71 l~~--ADiVVitag~~~~~g~~r~dll~~n~~i~~~i~~~i~~~~p~a~vivvsNP~d---i~t~~~~~~s~~p~~rviG 145 (319)
T PTZ00117 71 IKD--SDVVVITAGVQRKEEMTREDLLTINGKIMKSVAESVKKYCPNAFVICVTNPLD---CMVKVFQEKSGIPSNKICG 145 (319)
T ss_pred hCC--CCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecChHH---HHHHHHHHhhCCCcccEEE
Confidence 665 8988866655431 23489999999999998888899982 33445555542 133666
Q ss_pred eCC
Q 007802 469 SGS 471 (589)
Q Consensus 469 sGS 471 (589)
+|+
T Consensus 146 ~gt 148 (319)
T PTZ00117 146 MAG 148 (319)
T ss_pred ecc
Confidence 664
No 91
>PRK14178 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=90.30 E-value=0.87 Score=47.94 Aligned_cols=85 Identities=20% Similarity=0.336 Sum_probs=68.4
Q ss_pred chHHHHHHHHHHHHHHhCCCCCCceEEEeCcC-hHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEcccCcccCCcccCCc
Q 007802 307 GTASVVLAGILSALKLVGGTLADQTFLFLGAG-EAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLIVSSRKESLQ 385 (589)
Q Consensus 307 GTaaV~lAgll~Alr~~g~~l~d~riv~~GAG-sAg~GiA~ll~~~~~~~~G~s~eeA~~~i~~vD~~GLv~~~r~~~l~ 385 (589)
+-.-+|-.|++.=++-.+.+|++.+++++|-+ .-|.-+|.++.. .| ..+..++++
T Consensus 130 ~~~PcTp~av~~ll~~~~i~l~Gk~V~ViGrs~~vGrpla~lL~~-----~~-------atVtv~hs~------------ 185 (279)
T PRK14178 130 GFAPCTPNGIMTLLHEYKISIAGKRAVVVGRSIDVGRPMAALLLN-----AD-------ATVTICHSK------------ 185 (279)
T ss_pred CCCCCCHHHHHHHHHHcCCCCCCCEEEEECCCccccHHHHHHHHh-----CC-------CeeEEEecC------------
Confidence 34567888899999999999999999999999 888888887754 24 346666653
Q ss_pred hhchhhhcccCCCCCHHHHHhccCCcEEEeecCCCCCCCHHHHH
Q 007802 386 HFKKPWAHEHAPIKSLLDAVKAIKPTMLMGTSGVGKTFTKEVVE 429 (589)
Q Consensus 386 ~~k~~fa~~~~~~~~L~e~V~~vkPtvLIG~S~~~g~Fteevv~ 429 (589)
.++|.+.+++ +|++|+.-+.++.+|+++|+
T Consensus 186 ------------t~~L~~~~~~--ADIvI~Avgk~~lv~~~~vk 215 (279)
T PRK14178 186 ------------TENLKAELRQ--ADILVSAAGKAGFITPDMVK 215 (279)
T ss_pred ------------hhHHHHHHhh--CCEEEECCCcccccCHHHcC
Confidence 0368899986 99999999999999999974
No 92
>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed
Probab=90.26 E-value=0.68 Score=47.83 Aligned_cols=49 Identities=27% Similarity=0.365 Sum_probs=38.3
Q ss_pred HHHHHHHHH-hCCCCCCceEEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEccc
Q 007802 314 AGILSALKL-VGGTLADQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSK 373 (589)
Q Consensus 314 Agll~Alr~-~g~~l~d~riv~~GAGsAg~GiA~ll~~~~~~~~G~s~eeA~~~i~~vD~~ 373 (589)
.|++++++. .+..+++.+++++|+|.+|-+++..+.. .|+ ++|+++++.
T Consensus 107 ~G~~~~l~~~~~~~~~~k~vlVlGaGg~a~ai~~aL~~-----~g~------~~V~v~~R~ 156 (278)
T PRK00258 107 IGFVRALEERLGVDLKGKRILILGAGGAARAVILPLLD-----LGV------AEITIVNRT 156 (278)
T ss_pred HHHHHHHHhccCCCCCCCEEEEEcCcHHHHHHHHHHHH-----cCC------CEEEEEeCC
Confidence 456777764 5678999999999999888888877753 364 679999885
No 93
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=90.15 E-value=5.5 Score=41.14 Aligned_cols=32 Identities=28% Similarity=0.446 Sum_probs=26.7
Q ss_pred ceEEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEccc
Q 007802 330 QTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSK 373 (589)
Q Consensus 330 ~riv~~GAGsAg~GiA~ll~~~~~~~~G~s~eeA~~~i~~vD~~ 373 (589)
.+|.|+|+|..|.+||..+... |. +++++|.+
T Consensus 4 ~~I~ViGaG~mG~~iA~~la~~-----G~-------~V~l~d~~ 35 (291)
T PRK06035 4 KVIGVVGSGVMGQGIAQVFART-----GY-------DVTIVDVS 35 (291)
T ss_pred cEEEEECccHHHHHHHHHHHhc-----CC-------eEEEEeCC
Confidence 5799999999999999988653 63 58889875
No 94
>PRK15076 alpha-galactosidase; Provisional
Probab=90.13 E-value=0.85 Score=50.49 Aligned_cols=129 Identities=15% Similarity=0.137 Sum_probs=73.3
Q ss_pred ceEEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEcccCcccCCcccCCch-hchhhhcccCC-----CCCHHH
Q 007802 330 QTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLIVSSRKESLQH-FKKPWAHEHAP-----IKSLLD 403 (589)
Q Consensus 330 ~riv~~GAGsAg~GiA~ll~~~~~~~~G~s~eeA~~~i~~vD~~GLv~~~r~~~l~~-~k~~fa~~~~~-----~~~L~e 403 (589)
.||.|+|||+.| .+..++..+....++ +-..++|+|.+- +|.+.... .+..++..... .+++.+
T Consensus 2 ~KIaIIGaGsvg--~~~~~~~~i~~~~~l----~~~evvLvDid~----er~~~~~~l~~~~~~~~~~~~~i~~ttD~~e 71 (431)
T PRK15076 2 PKITFIGAGSTV--FTKNLLGDILSVPAL----RDAEIALMDIDP----ERLEESEIVARKLAESLGASAKITATTDRRE 71 (431)
T ss_pred cEEEEECCCHHH--hHHHHHHHHhhCccC----CCCEEEEECCCH----HHHHHHHHHHHHHHHhcCCCeEEEEECCHHH
Confidence 589999999985 444443333322234 235799999752 22110000 01111111111 257888
Q ss_pred HHhccCCcEEEeecCCCCCC-------------------------------------CHHHHHHHHcCCCCcEEEecCCC
Q 007802 404 AVKAIKPTMLMGTSGVGKTF-------------------------------------TKEVVEAMASFNEKPVIFALSNP 446 (589)
Q Consensus 404 ~V~~vkPtvLIG~S~~~g~F-------------------------------------teevv~~Ma~~~erPIIFaLSNP 446 (589)
+++. .|++|=..+++|.- =.++++.|.++|...+|+-.|||
T Consensus 72 al~d--ADfVv~ti~vg~~~~~~~~De~Iplk~G~~~~r~et~G~GG~~~~~r~i~~i~~i~~~i~~~~p~a~iin~tNP 149 (431)
T PRK15076 72 ALQG--ADYVINAIQVGGYEPCTVTDFEIPKKYGLRQTIGDTLGIGGIMRALRTIPVLLDICEDMEEVCPDALLLNYVNP 149 (431)
T ss_pred HhCC--CCEEeEeeeeCCcchhhhhhhhhHHHcCCeeecccCcCccchhhhhhhHHHHHHHHHHHHHHCCCeEEEEcCCh
Confidence 8876 78777555554321 14788889999999999999999
Q ss_pred CCCCCCCHHHHhccccCcEEEeeC-CCCC
Q 007802 447 TSQSECTAEEAYTWSKGQAIFASG-SPFD 474 (589)
Q Consensus 447 t~~~E~t~eda~~wT~GraifAsG-SPf~ 474 (589)
.. +..+-++.+++ .-+|.+| +|+.
T Consensus 150 ~d---ivt~~~~~~~~-~rviG~c~~~~~ 174 (431)
T PRK15076 150 MA---MNTWAMNRYPG-IKTVGLCHSVQG 174 (431)
T ss_pred HH---HHHHHHhcCCC-CCEEEECCCHHH
Confidence 82 22222335533 3477777 5543
No 95
>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=90.12 E-value=2.6 Score=44.00 Aligned_cols=33 Identities=24% Similarity=0.419 Sum_probs=26.5
Q ss_pred CceEEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEccc
Q 007802 329 DQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSK 373 (589)
Q Consensus 329 d~riv~~GAGsAg~GiA~ll~~~~~~~~G~s~eeA~~~i~~vD~~ 373 (589)
..||.|+|+|..|.++|..+..+ | .+++++|+.
T Consensus 4 ~m~I~iiG~G~~G~~lA~~l~~~-----G-------~~V~~~~r~ 36 (308)
T PRK14619 4 PKTIAILGAGAWGSTLAGLASAN-----G-------HRVRVWSRR 36 (308)
T ss_pred CCEEEEECccHHHHHHHHHHHHC-----C-------CEEEEEeCC
Confidence 35899999999999999999764 5 357777764
No 96
>PRK14176 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=90.11 E-value=1.4 Score=46.74 Aligned_cols=84 Identities=15% Similarity=0.260 Sum_probs=68.9
Q ss_pred hHHHHHHHHHHHHHHhCCCCCCceEEEeCcCh-HHHHHHHHHHHHHHhccCCCHHhhcCeEEEEcccCcccCCcccCCch
Q 007802 308 TASVVLAGILSALKLVGGTLADQTFLFLGAGE-AGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLIVSSRKESLQH 386 (589)
Q Consensus 308 TaaV~lAgll~Alr~~g~~l~d~riv~~GAGs-Ag~GiA~ll~~~~~~~~G~s~eeA~~~i~~vD~~GLv~~~r~~~l~~ 386 (589)
-.-+|-.|++..++-.+.+|++.+++++|.|. .|.-+|.+|.. .|. .+.+|+++
T Consensus 143 ~~PcTp~av~~ll~~~~i~l~Gk~vvViGrs~iVGkPla~lL~~-----~~a-------tVtv~hs~------------- 197 (287)
T PRK14176 143 LVPCTPHGVIRALEEYGVDIEGKNAVIVGHSNVVGKPMAAMLLN-----RNA-------TVSVCHVF------------- 197 (287)
T ss_pred CCCCcHHHHHHHHHHcCCCCCCCEEEEECCCcccHHHHHHHHHH-----CCC-------EEEEEecc-------------
Confidence 45678899999999999999999999999998 89999998864 242 46666642
Q ss_pred hchhhhcccCCCCCHHHHHhccCCcEEEeecCCCCCCCHHHHH
Q 007802 387 FKKPWAHEHAPIKSLLDAVKAIKPTMLMGTSGVGKTFTKEVVE 429 (589)
Q Consensus 387 ~k~~fa~~~~~~~~L~e~V~~vkPtvLIG~S~~~g~Fteevv~ 429 (589)
.++|.+.+++ +|++|-..|.++.+++++|+
T Consensus 198 -----------T~~l~~~~~~--ADIvv~AvG~p~~i~~~~vk 227 (287)
T PRK14176 198 -----------TDDLKKYTLD--ADILVVATGVKHLIKADMVK 227 (287)
T ss_pred -----------CCCHHHHHhh--CCEEEEccCCccccCHHHcC
Confidence 1257788886 99999999999999999776
No 97
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=90.03 E-value=0.78 Score=47.31 Aligned_cols=32 Identities=38% Similarity=0.531 Sum_probs=26.3
Q ss_pred ceEEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEccc
Q 007802 330 QTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSK 373 (589)
Q Consensus 330 ~riv~~GAGsAg~GiA~ll~~~~~~~~G~s~eeA~~~i~~vD~~ 373 (589)
+||.|+|+|..|.+||..+... | .+++++|.+
T Consensus 2 ~~V~VIG~G~mG~~iA~~la~~-----G-------~~V~~~d~~ 33 (288)
T PRK09260 2 EKLVVVGAGVMGRGIAYVFAVS-----G-------FQTTLVDIK 33 (288)
T ss_pred cEEEEECccHHHHHHHHHHHhC-----C-------CcEEEEeCC
Confidence 4799999999999999988653 5 358888875
No 98
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=90.01 E-value=0.37 Score=45.55 Aligned_cols=85 Identities=18% Similarity=0.291 Sum_probs=51.6
Q ss_pred eEEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEcccCcccCCcccCCchhch--hhhcc---cCC---CCCHH
Q 007802 331 TFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLIVSSRKESLQHFKK--PWAHE---HAP---IKSLL 402 (589)
Q Consensus 331 riv~~GAGsAg~GiA~ll~~~~~~~~G~s~eeA~~~i~~vD~~GLv~~~r~~~l~~~k~--~fa~~---~~~---~~~L~ 402 (589)
||.|+|||+.|+.+|..+... | .++.|.+++.-..+ .+...+. .|... .+. ..+|.
T Consensus 1 KI~ViGaG~~G~AlA~~la~~-----g-------~~V~l~~~~~~~~~----~i~~~~~n~~~~~~~~l~~~i~~t~dl~ 64 (157)
T PF01210_consen 1 KIAVIGAGNWGTALAALLADN-----G-------HEVTLWGRDEEQIE----EINETRQNPKYLPGIKLPENIKATTDLE 64 (157)
T ss_dssp EEEEESSSHHHHHHHHHHHHC-----T-------EEEEEETSCHHHHH----HHHHHTSETTTSTTSBEETTEEEESSHH
T ss_pred CEEEECcCHHHHHHHHHHHHc-----C-------CEEEEEeccHHHHH----HHHHhCCCCCCCCCcccCcccccccCHH
Confidence 789999999999999988653 5 56777777631111 1221111 11110 111 25899
Q ss_pred HHHhccCCcEEEeecCCCCCCCHHHHHHHHcCC
Q 007802 403 DAVKAIKPTMLMGTSGVGKTFTKEVVEAMASFN 435 (589)
Q Consensus 403 e~V~~vkPtvLIG~S~~~g~Fteevv~~Ma~~~ 435 (589)
+++++ +|++| +.. |--+-+++++.++.+-
T Consensus 65 ~a~~~--ad~Ii-iav-Ps~~~~~~~~~l~~~l 93 (157)
T PF01210_consen 65 EALED--ADIII-IAV-PSQAHREVLEQLAPYL 93 (157)
T ss_dssp HHHTT---SEEE-E-S--GGGHHHHHHHHTTTS
T ss_pred HHhCc--ccEEE-ecc-cHHHHHHHHHHHhhcc
Confidence 99986 77766 333 3356789999998754
No 99
>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP. Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....
Probab=89.99 E-value=0.53 Score=43.11 Aligned_cols=35 Identities=34% Similarity=0.521 Sum_probs=30.8
Q ss_pred CCceEEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEccc
Q 007802 328 ADQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSK 373 (589)
Q Consensus 328 ~d~riv~~GAGsAg~GiA~ll~~~~~~~~G~s~eeA~~~i~~vD~~ 373 (589)
++.||+++|+|+-|.-+|+.|+.. |+ ++|.++|.+
T Consensus 1 r~~~v~iiG~G~vGs~va~~L~~~-----Gv------~~i~lvD~d 35 (135)
T PF00899_consen 1 RNKRVLIIGAGGVGSEVAKNLARS-----GV------GKITLVDDD 35 (135)
T ss_dssp HT-EEEEESTSHHHHHHHHHHHHH-----TT------SEEEEEESS
T ss_pred CCCEEEEECcCHHHHHHHHHHHHh-----CC------CceeecCCc
Confidence 478999999999999999999875 76 889999997
No 100
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=89.92 E-value=1.4 Score=42.43 Aligned_cols=115 Identities=15% Similarity=0.110 Sum_probs=73.5
Q ss_pred HHHhCCCCCCceEEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEcccCcccCCcccCCchhchhhhcccCCCC
Q 007802 320 LKLVGGTLADQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLIVSSRKESLQHFKKPWAHEHAPIK 399 (589)
Q Consensus 320 lr~~g~~l~d~riv~~GAGsAg~GiA~ll~~~~~~~~G~s~eeA~~~i~~vD~~GLv~~~r~~~l~~~k~~fa~~~~~~~ 399 (589)
.+..+..|.+++|.|+|.|..|..+|+++... |+ +++.+|+..- +.. .+....-...
T Consensus 27 ~~~~~~~l~g~tvgIiG~G~IG~~vA~~l~~f-----G~-------~V~~~d~~~~----------~~~-~~~~~~~~~~ 83 (178)
T PF02826_consen 27 ERFPGRELRGKTVGIIGYGRIGRAVARRLKAF-----GM-------RVIGYDRSPK----------PEE-GADEFGVEYV 83 (178)
T ss_dssp TTTTBS-STTSEEEEESTSHHHHHHHHHHHHT-----T--------EEEEEESSCH----------HHH-HHHHTTEEES
T ss_pred cCCCccccCCCEEEEEEEcCCcCeEeeeeecC-----Cc-------eeEEecccCC----------hhh-hcccccceee
Confidence 34667889999999999999999999999643 64 6888888522 100 1111111235
Q ss_pred CHHHHHhccCCcEEEeecC----CCCCCCHHHHHHHHcCCCCcEEEecCCCCCCCCCCHHHHhcc--ccCcEE
Q 007802 400 SLLDAVKAIKPTMLMGTSG----VGKTFTKEVVEAMASFNEKPVIFALSNPTSQSECTAEEAYTW--SKGQAI 466 (589)
Q Consensus 400 ~L~e~V~~vkPtvLIG~S~----~~g~Fteevv~~Ma~~~erPIIFaLSNPt~~~E~t~eda~~w--T~Grai 466 (589)
+|.|+++. .|+++=.-- ..+.|+++.++.|. +.-++.-.|. .++--|+|+.. .+|+.-
T Consensus 84 ~l~ell~~--aDiv~~~~plt~~T~~li~~~~l~~mk---~ga~lvN~aR----G~~vde~aL~~aL~~g~i~ 147 (178)
T PF02826_consen 84 SLDELLAQ--ADIVSLHLPLTPETRGLINAEFLAKMK---PGAVLVNVAR----GELVDEDALLDALESGKIA 147 (178)
T ss_dssp SHHHHHHH---SEEEE-SSSSTTTTTSBSHHHHHTST---TTEEEEESSS----GGGB-HHHHHHHHHTTSEE
T ss_pred ehhhhcch--hhhhhhhhccccccceeeeeeeeeccc---cceEEEeccc----hhhhhhhHHHHHHhhccCc
Confidence 89999987 888874421 24799999999996 5667776655 45554444321 356654
No 101
>PRK14851 hypothetical protein; Provisional
Probab=89.78 E-value=1.1 Score=52.34 Aligned_cols=122 Identities=16% Similarity=0.123 Sum_probs=79.9
Q ss_pred CCCCCceEEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEcccCcccCCcc-------cCCchhchhhhcc---
Q 007802 325 GTLADQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLIVSSRK-------ESLQHFKKPWAHE--- 394 (589)
Q Consensus 325 ~~l~d~riv~~GAGsAg~GiA~ll~~~~~~~~G~s~eeA~~~i~~vD~~GLv~~~r~-------~~l~~~k~~fa~~--- 394 (589)
++|++.||+|+|+|..|.-+|+.|+.+ |+ ++|.++|-+=+-..+-. +++-..|..-+.+
T Consensus 39 ~kL~~~~VlIvG~GGlGs~va~~Lar~-----GV------G~l~LvD~D~ve~sNLNRQ~~~~~~dvG~~Kv~v~~~~l~ 107 (679)
T PRK14851 39 ERLAEAKVAIPGMGGVGGVHLITMVRT-----GI------GRFHIADFDQFEPVNVNRQFGARVPSFGRPKLAVMKEQAL 107 (679)
T ss_pred HHHhcCeEEEECcCHHHHHHHHHHHHh-----CC------CeEEEEcCCEecccccccCcCcChhhCCCHHHHHHHHHHH
Confidence 578999999999999999999988775 76 78999998733222110 1122222222211
Q ss_pred --c---------CCC--CCHHHHHhccCCcEEEeecCCCCCC-CHHHHHHHHcCCCCcEEEecC----------CCCCCC
Q 007802 395 --H---------API--KSLLDAVKAIKPTMLMGTSGVGKTF-TKEVVEAMASFNEKPVIFALS----------NPTSQS 450 (589)
Q Consensus 395 --~---------~~~--~~L~e~V~~vkPtvLIG~S~~~g~F-teevv~~Ma~~~erPIIFaLS----------NPt~~~ 450 (589)
. ..+ .++.+.+++ .|++|-+..-. .| ++..|...|..+..|+|++-. +|.
T Consensus 108 ~inP~~~I~~~~~~i~~~n~~~~l~~--~DvVid~~D~~-~~~~r~~l~~~c~~~~iP~i~~g~~G~~g~~~~~~p~--- 181 (679)
T PRK14851 108 SINPFLEITPFPAGINADNMDAFLDG--VDVVLDGLDFF-QFEIRRTLFNMAREKGIPVITAGPLGYSSAMLVFTPQ--- 181 (679)
T ss_pred HhCCCCeEEEEecCCChHHHHHHHhC--CCEEEECCCCC-cHHHHHHHHHHHHHCCCCEEEeecccccceEEEEcCC---
Confidence 0 111 256677775 89988554321 12 345677778888999998754 665
Q ss_pred CCCHHHHhccccC
Q 007802 451 ECTAEEAYTWSKG 463 (589)
Q Consensus 451 E~t~eda~~wT~G 463 (589)
....++.|.+.++
T Consensus 182 ~~~~~~~~~~~~~ 194 (679)
T PRK14851 182 GMGFDDYFNIGGK 194 (679)
T ss_pred CCCHhHhccCCCC
Confidence 5778888888777
No 102
>COG0169 AroE Shikimate 5-dehydrogenase [Amino acid transport and metabolism]
Probab=89.60 E-value=0.77 Score=48.36 Aligned_cols=48 Identities=38% Similarity=0.489 Sum_probs=38.9
Q ss_pred HHHHHHHHhC--CCCCCceEEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEccc
Q 007802 315 GILSALKLVG--GTLADQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSK 373 (589)
Q Consensus 315 gll~Alr~~g--~~l~d~riv~~GAGsAg~GiA~ll~~~~~~~~G~s~eeA~~~i~~vD~~ 373 (589)
|++.+|+-.+ ...+++++|++|||-|+.+|+-.|.+. |. ++|+++++.
T Consensus 110 G~~~~L~~~~~~~~~~~~~vlilGAGGAarAv~~aL~~~-----g~------~~i~V~NRt 159 (283)
T COG0169 110 GFLRALKEFGLPVDVTGKRVLILGAGGAARAVAFALAEA-----GA------KRITVVNRT 159 (283)
T ss_pred HHHHHHHhcCCCcccCCCEEEEECCcHHHHHHHHHHHHc-----CC------CEEEEEeCC
Confidence 5678888766 556789999999999999998877653 65 789999884
No 103
>COG0334 GdhA Glutamate dehydrogenase/leucine dehydrogenase [Amino acid transport and metabolism]
Probab=89.41 E-value=11 Score=41.88 Aligned_cols=187 Identities=22% Similarity=0.222 Sum_probs=124.3
Q ss_pred CCChhhHHHHHHHHHHHHHHhcCCceeeEeecCCCccH--HHHHHHHcCC-----Ccee----------ccCCCchHHHH
Q 007802 250 RATGQEYAELLQEFMTAVKQNYGEKVLIQFEDFANHNA--FELLSKYSSS-----HLVF----------NDDIQGTASVV 312 (589)
Q Consensus 250 R~~g~~y~~fidefv~av~~~fGp~~lIq~EDf~~~~A--f~iL~ryr~~-----~~~F----------nDDiQGTaaV~ 312 (589)
..+-.|-..|...|++++.+.-||+.-|-=+|++..-. -=+.+.|+.- .++| .+----||-=+
T Consensus 111 ~~S~~E~erl~raf~~~i~~~iGp~~dIpApDvgt~~~~m~wm~dey~~i~g~~~~gv~TGKp~~~GGS~~r~~aTg~Gv 190 (411)
T COG0334 111 GLSDGELERLSRAFGRAIYRLIGPDTDIPAPDVGTNPQDMAWMMDEYSKIVGNSAPGVFTGKPLELGGSLGRSEATGYGV 190 (411)
T ss_pred cCCHHHHHHHHHHHHHHHHHhcCCCcEecccccCCCHHHHHHHHHhhhhhcCCCCcceecCCcccccCCCCCCcccceeh
Confidence 35677888999999999999999999999999986321 1256666531 1122 12222343323
Q ss_pred HHHHHHHHHHhCCCCCCceEEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEcccCcccCCcccCCchhchhhh
Q 007802 313 LAGILSALKLVGGTLADQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLIVSSRKESLQHFKKPWA 392 (589)
Q Consensus 313 lAgll~Alr~~g~~l~d~riv~~GAGsAg~GiA~ll~~~~~~~~G~s~eeA~~~i~~vD~~GLv~~~r~~~l~~~k~~fa 392 (589)
.-+.-.|++..|.+|++.||.|-|.|.+|.-.|+.+.+ .|. |=+-+-|++|-|++.. .|+..+....
T Consensus 191 ~~~~~~a~~~~g~~l~G~rVaVQG~GNVg~~aa~~l~~-----~GA------kvva~sds~g~i~~~~--Gld~~~l~~~ 257 (411)
T COG0334 191 FYAIREALKALGDDLEGARVAVQGFGNVGQYAAEKLHE-----LGA------KVVAVSDSKGGIYDED--GLDVEALLEL 257 (411)
T ss_pred HHHHHHHHHHcCCCcCCCEEEEECccHHHHHHHHHHHH-----cCC------EEEEEEcCCCceecCC--CCCHHHHHHH
Confidence 33334888888988999999999999999999888764 263 5677789999888763 3553332211
Q ss_pred cc----------cCCCCCHHHHHhccCCcEEEeecCCCCCCCHHHHHHHHcCCCCcEEEecCC-CCCCCCCCHHHHhc
Q 007802 393 HE----------HAPIKSLLDAVKAIKPTMLMGTSGVGKTFTKEVVEAMASFNEKPVIFALSN-PTSQSECTAEEAYT 459 (589)
Q Consensus 393 ~~----------~~~~~~L~e~V~~vkPtvLIG~S~~~g~Fteevv~~Ma~~~erPIIFaLSN-Pt~~~E~t~eda~~ 459 (589)
++ .+.+.+ |.+-.+..||||=+.. .+..|++-.+...+ + +|.=-+| |++ -.+++.+.
T Consensus 258 ~~~~~~v~~~~ga~~i~~--~e~~~~~cDIl~PcA~-~n~I~~~na~~l~a---k-~V~EgAN~P~t---~eA~~i~~ 325 (411)
T COG0334 258 KERRGSVAEYAGAEYITN--EELLEVDCDILIPCAL-ENVITEDNADQLKA---K-IVVEGANGPTT---PEADEILL 325 (411)
T ss_pred hhhhhhHHhhcCceEccc--cccccccCcEEccccc-ccccchhhHHHhhh---c-EEEeccCCCCC---HHHHHHHH
Confidence 11 111122 3344567899997666 56899998888753 2 8888888 763 33445444
No 104
>cd05297 GH4_alpha_glucosidase_galactosidase Glycoside Hydrolases Family 4; Alpha-glucosidases and alpha-galactosidases. linked to 3D####ucture
Probab=89.24 E-value=1 Score=49.54 Aligned_cols=126 Identities=15% Similarity=0.203 Sum_probs=71.4
Q ss_pred eEEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEcccCcccCCcccCCchhchhhhccc------CCCCCHHHH
Q 007802 331 TFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLIVSSRKESLQHFKKPWAHEH------APIKSLLDA 404 (589)
Q Consensus 331 riv~~GAGsAg~GiA~ll~~~~~~~~G~s~eeA~~~i~~vD~~GLv~~~r~~~l~~~k~~fa~~~------~~~~~L~e~ 404 (589)
||.|+|||+.|.+.+- +..+.....+ +-.+++|+|.+- ++-+.+...-+.++... ....++.++
T Consensus 2 KIaIIGaGs~G~a~a~--~~~i~~~~~~----~g~eV~L~Did~----e~l~~~~~~~~~~~~~~~~~~~I~~ttD~~ea 71 (423)
T cd05297 2 KIAFIGAGSVVFTKNL--VGDLLKTPEL----SGSTIALMDIDE----ERLETVEILAKKIVEELGAPLKIEATTDRREA 71 (423)
T ss_pred eEEEECCChHHhHHHH--HHHHhcCCCC----CCCEEEEECCCH----HHHHHHHHHHHHHHHhcCCCeEEEEeCCHHHH
Confidence 7999999998887653 1112110111 235799999752 22111111111121111 112578899
Q ss_pred HhccCCcEEEeecCCC---------------CCCC---------------------HHHHHHHHcCCCCcEEEecCCCCC
Q 007802 405 VKAIKPTMLMGTSGVG---------------KTFT---------------------KEVVEAMASFNEKPVIFALSNPTS 448 (589)
Q Consensus 405 V~~vkPtvLIG~S~~~---------------g~Ft---------------------eevv~~Ma~~~erPIIFaLSNPt~ 448 (589)
++. .|++|=.-..+ |+|. .++.+.|.++|.+.+++=.|||.
T Consensus 72 l~~--AD~Vi~ai~~~~~~~~~~de~i~~K~g~~~~~~~t~g~ggi~~~~~s~~~i~~ia~~i~~~~p~a~~i~~tNPv- 148 (423)
T cd05297 72 LDG--ADFVINTIQVGGHEYTETDFEIPEKYGYYQTVGDTSGPGGIFRALRTIPVLLDIARDIEELCPDAWLLNYANPM- 148 (423)
T ss_pred hcC--CCEEEEeeEecCccchhhhhhhHHHcCeeeeccCCCcHHHHHHHHhhHHHHHHHHHHHHHHCCCCEEEEcCChH-
Confidence 986 88777544321 2222 27788888888999999999998
Q ss_pred CCCCCHHHHhccccCcEEEeeC-CC
Q 007802 449 QSECTAEEAYTWSKGQAIFASG-SP 472 (589)
Q Consensus 449 ~~E~t~eda~~wT~GraifAsG-SP 472 (589)
..+ .+-+++.++ .=++.+| +|
T Consensus 149 -~i~-t~~~~k~~~-~rviG~c~~~ 170 (423)
T cd05297 149 -AEL-TWALNRYTP-IKTVGLCHGV 170 (423)
T ss_pred -HHH-HHHHHHhCC-CCEEEECCcH
Confidence 222 223346665 4467776 44
No 105
>PRK15438 erythronate-4-phosphate dehydrogenase PdxB; Provisional
Probab=89.07 E-value=3.8 Score=44.91 Aligned_cols=117 Identities=15% Similarity=0.216 Sum_probs=83.0
Q ss_pred CchHHHHHHHHHHHHHHhCCCCCCceEEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEcccCcccCCcccCCc
Q 007802 306 QGTASVVLAGILSALKLVGGTLADQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLIVSSRKESLQ 385 (589)
Q Consensus 306 QGTaaV~lAgll~Alr~~g~~l~d~riv~~GAGsAg~GiA~ll~~~~~~~~G~s~eeA~~~i~~vD~~GLv~~~r~~~l~ 385 (589)
+..|=-+++.+++..|-.|..|++.++.|+|.|..|-.+|+.+... |+ ++..+|.. +.. .
T Consensus 93 ~aVAE~~~~~lL~l~r~~g~~L~gktvGIIG~G~IG~~vA~~l~a~-----G~-------~V~~~dp~------~~~--~ 152 (378)
T PRK15438 93 IAVVEYVFSSLLMLAERDGFSLHDRTVGIVGVGNVGRRLQARLEAL-----GI-------KTLLCDPP------RAD--R 152 (378)
T ss_pred hHHHHHHHHHHHHHhccCCCCcCCCEEEEECcCHHHHHHHHHHHHC-----CC-------EEEEECCc------ccc--c
Confidence 3455668899999889889999999999999999999999998643 65 57778853 111 0
Q ss_pred hhchhhhcccCCCCCHHHHHhccCCcEEEee---cC-----CCCCCCHHHHHHHHcCCCCcEEEecCCCCCCCCCCHHHH
Q 007802 386 HFKKPWAHEHAPIKSLLDAVKAIKPTMLMGT---SG-----VGKTFTKEVVEAMASFNEKPVIFALSNPTSQSECTAEEA 457 (589)
Q Consensus 386 ~~k~~fa~~~~~~~~L~e~V~~vkPtvLIG~---S~-----~~g~Fteevv~~Ma~~~erPIIFaLSNPt~~~E~t~eda 457 (589)
. ......+|.|+++. .|+++=. .. .-+.|+++.++.|. +..|+.=.|. -+.-=|+|
T Consensus 153 ~-------~~~~~~~L~ell~~--sDiI~lh~PLt~~g~~~T~~li~~~~l~~mk---~gailIN~aR----G~vVDe~A 216 (378)
T PRK15438 153 G-------DEGDFRSLDELVQE--ADILTFHTPLFKDGPYKTLHLADEKLIRSLK---PGAILINACR----GAVVDNTA 216 (378)
T ss_pred c-------cccccCCHHHHHhh--CCEEEEeCCCCCCcccccccccCHHHHhcCC---CCcEEEECCC----chhcCHHH
Confidence 0 00123579999976 8988721 11 23689999999996 6778886655 55555555
Q ss_pred h
Q 007802 458 Y 458 (589)
Q Consensus 458 ~ 458 (589)
+
T Consensus 217 L 217 (378)
T PRK15438 217 L 217 (378)
T ss_pred H
Confidence 4
No 106
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=89.07 E-value=0.52 Score=50.54 Aligned_cols=38 Identities=32% Similarity=0.500 Sum_probs=33.7
Q ss_pred CCCCCceEEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEccc
Q 007802 325 GTLADQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSK 373 (589)
Q Consensus 325 ~~l~d~riv~~GAGsAg~GiA~ll~~~~~~~~G~s~eeA~~~i~~vD~~ 373 (589)
.+|++.||+|+|+|.-|.-+|..|+.+ |+ ++|.++|.+
T Consensus 20 ~~L~~~~VlVvG~GglGs~va~~La~a-----Gv------g~i~lvD~D 57 (339)
T PRK07688 20 QKLREKHVLIIGAGALGTANAEMLVRA-----GV------GKVTIVDRD 57 (339)
T ss_pred HHhcCCcEEEECCCHHHHHHHHHHHHc-----CC------CeEEEEeCC
Confidence 578999999999999999999998764 76 789999996
No 107
>PF02056 Glyco_hydro_4: Family 4 glycosyl hydrolase; InterPro: IPR001088 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 4 GH4 from CAZY comprises enzymes with several known activities; 6-phospho-beta-glucosidase (3.2.1.86 from EC); 6-phospho-alpha-glucosidase (3.2.1.122 from EC); alpha-galactosidase (3.2.1.22 from EC). 6-phospho-alpha-glucosidase requires both NAD(H) and divalent metal (Mn2+, Fe2+, Co2+, or Ni2+) for activity [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1U8X_X 1S6Y_A 3FEF_B 1VJT_A 1UP4_A 1UP6_C 1UP7_E 1OBB_A.
Probab=89.02 E-value=0.91 Score=45.02 Aligned_cols=109 Identities=17% Similarity=0.278 Sum_probs=68.7
Q ss_pred eEEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEcccCcccCCcccCCchhchhhhcc-cCC-----CCCHHHH
Q 007802 331 TFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLIVSSRKESLQHFKKPWAHE-HAP-----IKSLLDA 404 (589)
Q Consensus 331 riv~~GAGsAg~GiA~ll~~~~~~~~G~s~eeA~~~i~~vD~~GLv~~~r~~~l~~~k~~fa~~-~~~-----~~~L~e~ 404 (589)
||+|+||||+- ...++...+...+.++ .+.|+|+|.+ .+|-+.....-+.+++. ..+ ..++.||
T Consensus 1 KI~iIGaGS~~--~~~~l~~~l~~~~~l~----~~ei~L~Did----~~RL~~~~~~~~~~~~~~~~~~~v~~ttd~~eA 70 (183)
T PF02056_consen 1 KITIIGAGSTY--FPLLLLGDLLRTEELS----GSEIVLMDID----EERLEIVERLARRMVEEAGADLKVEATTDRREA 70 (183)
T ss_dssp EEEEETTTSCC--HHHHHHHHHHCTTTST----EEEEEEE-SC----HHHHHHHHHHHHHHHHHCTTSSEEEEESSHHHH
T ss_pred CEEEECCchHh--hHHHHHHHHhcCccCC----CcEEEEEcCC----HHHHHHHHHHHHHHHHhcCCCeEEEEeCCHHHH
Confidence 79999999985 4456666555544553 4689999986 23311112222333332 122 2589999
Q ss_pred HhccCCcEEEeecCCC----------------------------CCCC--------HHHHHHHHcCCCCcEEEecCCCCC
Q 007802 405 VKAIKPTMLMGTSGVG----------------------------KTFT--------KEVVEAMASFNEKPVIFALSNPTS 448 (589)
Q Consensus 405 V~~vkPtvLIG~S~~~----------------------------g~Ft--------eevv~~Ma~~~erPIIFaLSNPt~ 448 (589)
++. +|.+|=.-.+| |.|. .|+.+.|.+.|+.--||=.+||.
T Consensus 71 l~g--ADfVi~~irvGg~~~r~~De~Ip~k~Gi~~~~~eT~G~GG~~~alRtipv~~~ia~~i~~~~PdAw~iNytNP~- 147 (183)
T PF02056_consen 71 LEG--ADFVINQIRVGGLEAREIDEEIPLKYGIVGTIQETVGPGGFFRALRTIPVMLDIARDIEELCPDAWLINYTNPM- 147 (183)
T ss_dssp HTT--ESEEEE---TTHHHHHHHHHHTGGCCTTT-BTTSSSTHHHHHHHHHHHHHHHHHHHHHHHHTTTSEEEE-SSSH-
T ss_pred hCC--CCEEEEEeeecchHHHHHHHHHHHHhCCccccccccCccHHHHHHhhHHHHHHHHHHHHHhCCCcEEEeccChH-
Confidence 997 88887443333 2221 58999999999999999999998
Q ss_pred CCCCC
Q 007802 449 QSECT 453 (589)
Q Consensus 449 ~~E~t 453 (589)
+++|
T Consensus 148 -~~vt 151 (183)
T PF02056_consen 148 -GIVT 151 (183)
T ss_dssp -HHHH
T ss_pred -HHHH
Confidence 5554
No 108
>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E.coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=89.02 E-value=0.75 Score=46.88 Aligned_cols=105 Identities=18% Similarity=0.227 Sum_probs=62.9
Q ss_pred CCCCceEEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEcccCcccCCcccCCchhchhhhc-cc-C--CCCCH
Q 007802 326 TLADQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLIVSSRKESLQHFKKPWAH-EH-A--PIKSL 401 (589)
Q Consensus 326 ~l~d~riv~~GAGsAg~GiA~ll~~~~~~~~G~s~eeA~~~i~~vD~~GLv~~~r~~~l~~~k~~fa~-~~-~--~~~~L 401 (589)
+|++.+|+++|+|..|.-+|+.|+.+ |+ .+|.++|.+= |..+ +|+.+ .++. +. . ...-+
T Consensus 8 ~L~~~~VlVvG~GGvGs~va~~Lar~-----GV------g~i~LvD~D~-V~~s---NlnRq--~~~~~~diG~~Kae~~ 70 (231)
T cd00755 8 KLRNAHVAVVGLGGVGSWAAEALARS-----GV------GKLTLIDFDV-VCVS---NLNRQ--IHALLSTVGKPKVEVM 70 (231)
T ss_pred HHhCCCEEEECCCHHHHHHHHHHHHc-----CC------CEEEEECCCE-ECch---hhcch--hCcChhhCCCcHHHHH
Confidence 57889999999999999999999764 76 7899999872 2221 34332 1221 11 1 11246
Q ss_pred HHHHhccCCcEEEeecCCCCCCCHHHHHHHHcCCCCcEEEecCCCCCC
Q 007802 402 LDAVKAIKPTMLMGTSGVGKTFTKEVVEAMASFNEKPVIFALSNPTSQ 449 (589)
Q Consensus 402 ~e~V~~vkPtvLIG~S~~~g~Fteevv~~Ma~~~erPIIFaLSNPt~~ 449 (589)
.+-++.+.|++=|-... .-++++-+...-...-.=||-+.-|+..+
T Consensus 71 ~~~l~~inP~~~V~~~~--~~i~~~~~~~l~~~~~D~VvdaiD~~~~k 116 (231)
T cd00755 71 AERIRDINPECEVDAVE--EFLTPDNSEDLLGGDPDFVVDAIDSIRAK 116 (231)
T ss_pred HHHHHHHCCCcEEEEee--eecCHhHHHHHhcCCCCEEEEcCCCHHHH
Confidence 66677777776655433 24555544443321223355556666644
No 109
>PRK05597 molybdopterin biosynthesis protein MoeB; Validated
Probab=88.53 E-value=1.1 Score=48.12 Aligned_cols=38 Identities=24% Similarity=0.311 Sum_probs=33.7
Q ss_pred CCCCCceEEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEccc
Q 007802 325 GTLADQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSK 373 (589)
Q Consensus 325 ~~l~d~riv~~GAGsAg~GiA~ll~~~~~~~~G~s~eeA~~~i~~vD~~ 373 (589)
.+|++.||+|+|+|..|.-+|+.|+.+ |+ ++|.++|.+
T Consensus 24 ~~L~~~~VlivG~GGlGs~~a~~La~~-----Gv------g~i~lvD~D 61 (355)
T PRK05597 24 QSLFDAKVAVIGAGGLGSPALLYLAGA-----GV------GHITIIDDD 61 (355)
T ss_pred HHHhCCeEEEECCCHHHHHHHHHHHHc-----CC------CeEEEEeCC
Confidence 568899999999999999999998764 87 789999998
No 110
>cd00704 MDH Malate dehydrogenase. Malate dehydrogenase (MDH) is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. MDHs belong to the NAD-dependent, lactate dehydrogenase (LDH)-like, 2-hydroxycarboxylate dehydrogenase family, which also includes the GH4 family of glycoside hydrolases. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=88.49 E-value=2 Score=45.83 Aligned_cols=110 Identities=19% Similarity=0.158 Sum_probs=69.3
Q ss_pred eEEEeCc-ChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEcccCc--ccCCcccCCchhchhhhcccCCCCCHHHHHhc
Q 007802 331 TFLFLGA-GEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGL--IVSSRKESLQHFKKPWAHEHAPIKSLLDAVKA 407 (589)
Q Consensus 331 riv~~GA-GsAg~GiA~ll~~~~~~~~G~s~eeA~~~i~~vD~~GL--v~~~r~~~l~~~k~~fa~~~~~~~~L~e~V~~ 407 (589)
||.|.|| |..|..+|-.|+. .|+-.|.-...+.|+|.+.- ..++..-+|.+..-++.+...-..+..+.+++
T Consensus 2 KV~IiGAaG~VG~~~a~~L~~-----~~~~~~~~~~~l~L~Di~~~~~~~~g~~~Dl~d~~~~~~~~~~i~~~~~~~~~~ 76 (323)
T cd00704 2 HVLITGAAGQIGYNLLFLIAS-----GELFGDDQPVILHLLDIPPAMKALEGVVMELQDCAFPLLKGVVITTDPEEAFKD 76 (323)
T ss_pred EEEEECCCcHHHHHHHHHHHh-----CCccCCCCceEEEEEecCCccCccceeeeehhhhcccccCCcEEecChHHHhCC
Confidence 7999999 9999999987764 35532222347999998741 11111112433322332211111457788887
Q ss_pred cCCcEEEeecCCC---CC-----------CCHHHHHHHHcCC-CCcEEEecCCCC
Q 007802 408 IKPTMLMGTSGVG---KT-----------FTKEVVEAMASFN-EKPVIFALSNPT 447 (589)
Q Consensus 408 vkPtvLIG~S~~~---g~-----------Fteevv~~Ma~~~-erPIIFaLSNPt 447 (589)
.|++|=+.+.+ |- .-+++++.|.+++ +.-||+--|||.
T Consensus 77 --aDiVVitAG~~~~~g~tR~dll~~N~~i~~~i~~~i~~~~~~~~iiivvsNPv 129 (323)
T cd00704 77 --VDVAILVGAFPRKPGMERADLLRKNAKIFKEQGEALNKVAKPTVKVLVVGNPA 129 (323)
T ss_pred --CCEEEEeCCCCCCcCCcHHHHHHHhHHHHHHHHHHHHHhCCCCeEEEEeCCcH
Confidence 88888555554 31 1257888899994 999999999998
No 111
>PRK06223 malate dehydrogenase; Reviewed
Probab=88.40 E-value=1.2 Score=46.30 Aligned_cols=126 Identities=17% Similarity=0.300 Sum_probs=71.7
Q ss_pred ceEEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEcccCcccCCcccCCchhchhhhcc--cCCCCCHHHHHhc
Q 007802 330 QTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLIVSSRKESLQHFKKPWAHE--HAPIKSLLDAVKA 407 (589)
Q Consensus 330 ~riv~~GAGsAg~GiA~ll~~~~~~~~G~s~eeA~~~i~~vD~~GLv~~~r~~~l~~~k~~fa~~--~~~~~~L~e~V~~ 407 (589)
.||.|+|||..|.++|..+.. .|+ . .++++|.+-=..++...++.+........ -....+. ++++.
T Consensus 3 ~KI~VIGaG~vG~~ia~~la~-----~~~-----~-ev~L~D~~~~~~~~~~~dl~~~~~~~~~~~~i~~~~d~-~~~~~ 70 (307)
T PRK06223 3 KKISIIGAGNVGATLAHLLAL-----KEL-----G-DVVLFDIVEGVPQGKALDIAEAAPVEGFDTKITGTNDY-EDIAG 70 (307)
T ss_pred CEEEEECCCHHHHHHHHHHHh-----CCC-----e-EEEEEECCCchhHHHHHHHHhhhhhcCCCcEEEeCCCH-HHHCC
Confidence 489999999999999997754 254 2 79999983111111000011100000000 0011346 45664
Q ss_pred cCCcEEEeecCCC---C-----------CCCHHHHHHHHcCCCCcEEEecCCCCCCCCCCHHHHhccccC---cEEEeeC
Q 007802 408 IKPTMLMGTSGVG---K-----------TFTKEVVEAMASFNEKPVIFALSNPTSQSECTAEEAYTWSKG---QAIFASG 470 (589)
Q Consensus 408 vkPtvLIG~S~~~---g-----------~Fteevv~~Ma~~~erPIIFaLSNPt~~~E~t~eda~~wT~G---raifAsG 470 (589)
.|++|=+.+.| | -.-+++++.|.+++...+++-.|||. .....-+++++ | +-+|++|
T Consensus 71 --aDiVii~~~~p~~~~~~r~~~~~~n~~i~~~i~~~i~~~~~~~~viv~tNP~---d~~~~~~~~~s-~~~~~~viG~g 144 (307)
T PRK06223 71 --SDVVVITAGVPRKPGMSRDDLLGINAKIMKDVAEGIKKYAPDAIVIVVTNPV---DAMTYVALKES-GFPKNRVIGMA 144 (307)
T ss_pred --CCEEEECCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcH---HHHHHHHHHHh-CCCcccEEEeC
Confidence 88888333333 2 12357788888999999888889998 22233344444 3 4588888
Q ss_pred CCC
Q 007802 471 SPF 473 (589)
Q Consensus 471 SPf 473 (589)
.-.
T Consensus 145 t~l 147 (307)
T PRK06223 145 GVL 147 (307)
T ss_pred CCc
Confidence 543
No 112
>cd05298 GH4_GlvA_pagL_like Glycoside Hydrolases Family 4; GlvA- and pagL-like glycosidases. Bacillus subtilis GlvA and Clostridium acetobutylicum pagL are 6-phospho-alpha-glucosidase, catalyzing the hydrolysis of alpha-glucopyranoside bonds to release glucose from oligosaccharides. The substrate specificities of other members of this subgroup are unknown. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP_PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases, which include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. Members of this subfamily are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductas
Probab=88.36 E-value=1.1 Score=49.75 Aligned_cols=130 Identities=15% Similarity=0.214 Sum_probs=76.3
Q ss_pred ceEEEeCcChHHHHHHHHHHHHHHhc-cCCCHHhhcCeEEEEcccCcccCCcccCCchhchhhhcc-cCC-----CCCHH
Q 007802 330 QTFLFLGAGEAGTGIAELIALEMSKQ-TKAPIEEARKKIWLVDSKGLIVSSRKESLQHFKKPWAHE-HAP-----IKSLL 402 (589)
Q Consensus 330 ~riv~~GAGsAg~GiA~ll~~~~~~~-~G~s~eeA~~~i~~vD~~GLv~~~r~~~l~~~k~~fa~~-~~~-----~~~L~ 402 (589)
.||+|+||||+ -.-.|+..+.+. ..++ -..|+|+|.+. +|-+-+...-+.+++. ..+ ..++.
T Consensus 1 ~KI~iIGaGS~---~tp~li~~l~~~~~~l~----~~ei~L~DId~----~rl~~v~~l~~~~~~~~g~~~~v~~Ttdr~ 69 (437)
T cd05298 1 FKIVIAGGGST---YTPGIVKSLLDRKEDFP----LRELVLYDIDA----ERQEKVAEAVKILFKENYPEIKFVYTTDPE 69 (437)
T ss_pred CeEEEECCcHH---HHHHHHHHHHhCcccCC----CCEEEEECCCH----HHHHHHHHHHHHHHHhhCCCeEEEEECCHH
Confidence 38999999996 555666655442 2343 47899999863 3321112222222221 112 25788
Q ss_pred HHHhccCCcEEEeecCC--------------------------CCCC--------CHHHHHHHHcCCCCcEEEecCCCCC
Q 007802 403 DAVKAIKPTMLMGTSGV--------------------------GKTF--------TKEVVEAMASFNEKPVIFALSNPTS 448 (589)
Q Consensus 403 e~V~~vkPtvLIG~S~~--------------------------~g~F--------teevv~~Ma~~~erPIIFaLSNPt~ 448 (589)
||++. +|.+|=.-.+ ||.| -.++++.|.+.|...+++-.|||.
T Consensus 70 eAl~g--ADfVi~~irvGg~~~r~~De~Ip~kyGi~gqET~G~GG~~~alRtip~~~~i~~~i~~~~pda~lin~tNP~- 146 (437)
T cd05298 70 EAFTD--ADFVFAQIRVGGYAMREQDEKIPLKHGVVGQETCGPGGFAYGLRSIGPMIELIDDIEKYSPDAWILNYSNPA- 146 (437)
T ss_pred HHhCC--CCEEEEEeeeCCchHHHHHHhHHHHcCcceecCccHHHHHHHHhhHHHHHHHHHHHHHHCCCeEEEEecCcH-
Confidence 88887 7766533222 2322 258889999999999999999998
Q ss_pred CCCCCHHHHhccccCcEEEeeCCCCC
Q 007802 449 QSECTAEEAYTWSKGQAIFASGSPFD 474 (589)
Q Consensus 449 ~~E~t~eda~~wT~GraifAsGSPf~ 474 (589)
..+|-.---.++.-|+|=-+-+|+.
T Consensus 147 -~~vt~~~~~~~~~~kviGlC~~~~~ 171 (437)
T cd05298 147 -AIVAEALRRLFPNARILNICDMPIA 171 (437)
T ss_pred -HHHHHHHHHHCCCCCEEEECCcHHH
Confidence 4443322111344566555555553
No 113
>COG0111 SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism]
Probab=87.97 E-value=4.1 Score=43.69 Aligned_cols=100 Identities=22% Similarity=0.216 Sum_probs=69.6
Q ss_pred hHHHHHHHHHHHHH------------------HhCCCCCCceEEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeEEE
Q 007802 308 TASVVLAGILSALK------------------LVGGTLADQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWL 369 (589)
Q Consensus 308 TaaV~lAgll~Alr------------------~~g~~l~d~riv~~GAGsAg~GiA~ll~~~~~~~~G~s~eeA~~~i~~ 369 (589)
.|=-+++.+|+..| ..|..|.++++-|+|.|..|..+|+.+... |+ ++..
T Consensus 103 vAE~~~~~~L~~~R~~~~~~~~~~~g~W~~~~~~g~el~gkTvGIiG~G~IG~~va~~l~af-----gm-------~v~~ 170 (324)
T COG0111 103 VAELVLALLLALARRIPDADASQRRGEWDRKAFRGTELAGKTVGIIGLGRIGRAVAKRLKAF-----GM-------KVIG 170 (324)
T ss_pred HHHHHHHHHHHHhcCchhhHHHHHcCCccccccccccccCCEEEEECCCHHHHHHHHHHHhC-----CC-------eEEE
Confidence 34457777888777 567789999999999999999999988654 65 5777
Q ss_pred EcccCcccCCcccCCchhchhhhcccCCCCCHHHHHhccCCcEEEeec----CCCCCCCHHHHHHHH
Q 007802 370 VDSKGLIVSSRKESLQHFKKPWAHEHAPIKSLLDAVKAIKPTMLMGTS----GVGKTFTKEVVEAMA 432 (589)
Q Consensus 370 vD~~GLv~~~r~~~l~~~k~~fa~~~~~~~~L~e~V~~vkPtvLIG~S----~~~g~Fteevv~~Ma 432 (589)
+|+. ..+. .. -........+|.+.++. .|+|.-.- ..-|.++++-+..|.
T Consensus 171 ~d~~----~~~~--~~-----~~~~~~~~~~Ld~lL~~--sDiv~lh~PlT~eT~g~i~~~~~a~MK 224 (324)
T COG0111 171 YDPY----SPRE--RA-----GVDGVVGVDSLDELLAE--ADILTLHLPLTPETRGLINAEELAKMK 224 (324)
T ss_pred ECCC----Cchh--hh-----ccccceecccHHHHHhh--CCEEEEcCCCCcchhcccCHHHHhhCC
Confidence 8873 1110 00 00111234679999986 89888542 223789999999994
No 114
>TIGR02992 ectoine_eutC ectoine utilization protein EutC. Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. This family belongs to the ornithine cyclodeaminase/mu-crystallin family (pfam02423).
Probab=87.94 E-value=3.6 Score=43.65 Aligned_cols=115 Identities=13% Similarity=0.146 Sum_probs=65.6
Q ss_pred HHHHHHHHhCCCCCCceEEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEcccCcccCCcccCCchhchhhhcc
Q 007802 315 GILSALKLVGGTLADQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLIVSSRKESLQHFKKPWAHE 394 (589)
Q Consensus 315 gll~Alr~~g~~l~d~riv~~GAGsAg~GiA~ll~~~~~~~~G~s~eeA~~~i~~vD~~GLv~~~r~~~l~~~k~~fa~~ 394 (589)
|.+++...... ...+++|+|+|..|..++..+... .++ ++|+++++. ..| ...+...+.+.
T Consensus 117 ~~laa~~la~~--~~~~v~iiGaG~qA~~~~~al~~~----~~i------~~v~V~~R~----~~~---a~~~a~~~~~~ 177 (326)
T TIGR02992 117 GAVAARHLARE--DSSVVAIFGAGMQARLQLEALTLV----RDI------RSARIWARD----SAK---AEALALQLSSL 177 (326)
T ss_pred HHHHHHHhCCC--CCcEEEEECCCHHHHHHHHHHHHh----CCc------cEEEEECCC----HHH---HHHHHHHHHhh
Confidence 44444444322 346899999999998888877543 244 678888773 222 22222222211
Q ss_pred ----cCCCCCHHHHHhccCCcEEEeecCCC-CCCCHHHHHHHHcCCCCcEEEecCCCC-CCCCCCHHH
Q 007802 395 ----HAPIKSLLDAVKAIKPTMLMGTSGVG-KTFTKEVVEAMASFNEKPVIFALSNPT-SQSECTAEE 456 (589)
Q Consensus 395 ----~~~~~~L~e~V~~vkPtvLIG~S~~~-g~Fteevv~~Ma~~~erPIIFaLSNPt-~~~E~t~ed 456 (589)
-....++.++++. .|++|-+++.. ..|+.+.++. .-.|.++..-+ .+-|+.++-
T Consensus 178 ~g~~v~~~~~~~~av~~--aDiVvtaT~s~~p~i~~~~l~~------g~~i~~vg~~~p~~rEld~~~ 237 (326)
T TIGR02992 178 LGIDVTAATDPRAAMSG--ADIIVTTTPSETPILHAEWLEP------GQHVTAMGSDAEHKNEIDPAV 237 (326)
T ss_pred cCceEEEeCCHHHHhcc--CCEEEEecCCCCcEecHHHcCC------CcEEEeeCCCCCCceecCHHH
Confidence 1123678999975 99999775432 3566666542 22444444322 256777654
No 115
>PRK04346 tryptophan synthase subunit beta; Validated
Probab=87.30 E-value=13 Score=41.06 Aligned_cols=95 Identities=25% Similarity=0.392 Sum_probs=54.6
Q ss_pred eeeEEeecCCCccccccCcccccccccCCChhhHHHHHHHHHH---------HHHHhc-CCceeeEeecCCCccHHHHHH
Q 007802 223 CLPITIDVGTNNEQLLNDEFYIGLRQKRATGQEYAELLQEFMT---------AVKQNY-GEKVLIQFEDFANHNAFELLS 292 (589)
Q Consensus 223 ~lPI~LDvGTnn~~LL~Dp~YlG~r~~R~~g~~y~~fidefv~---------av~~~f-Gp~~lIq~EDf~~~~Af~iL~ 292 (589)
.+|.+.+.-..=+++.+||-+. +||+.++.+++- .+.+.+ |.+..+-.||+....+|++-
T Consensus 23 ~~~~~~~~~~~~~~~~~~~~f~---------~~~~~~~~~~~grpTPL~~~~~Ls~~~gg~~IylK~EdlnptGS~K~r- 92 (397)
T PRK04346 23 LMPALEELEEAYEKAKNDPEFQ---------AELDYLLKNYVGRPTPLYFAERLSEHLGGAKIYLKREDLNHTGAHKIN- 92 (397)
T ss_pred HHHHHHHHHHHHHHHhcCHHHH---------HHHHHHHHHhcCCCCCceEhHHHHHHcCCCeEEEEECCCCCccchHHH-
Confidence 3444444444445677777542 555555555532 355556 46777777887777777541
Q ss_pred HHcCCCceeccCCCchHHHHHHHHHHHHHHhCCCCCCceEEE-eCcChHHHHHHHHHHH
Q 007802 293 KYSSSHLVFNDDIQGTASVVLAGILSALKLVGGTLADQTFLF-LGAGEAGTGIAELIAL 350 (589)
Q Consensus 293 ryr~~~~~FnDDiQGTaaV~lAgll~Alr~~g~~l~d~riv~-~GAGsAg~GiA~ll~~ 350 (589)
.++.-++.|.+ .|+ .+++. -|||..|+++|-....
T Consensus 93 ------------------~al~~~l~A~~-~Gk----~~vIaetgaGnhG~A~A~~aa~ 128 (397)
T PRK04346 93 ------------------NVLGQALLAKR-MGK----KRIIAETGAGQHGVATATAAAL 128 (397)
T ss_pred ------------------HHHHHHHHHHH-cCC----CeEEEecCcHHHHHHHHHHHHH
Confidence 12333333332 343 35666 6999999888876543
No 116
>PRK14183 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=87.20 E-value=2.6 Score=44.48 Aligned_cols=85 Identities=18% Similarity=0.226 Sum_probs=67.9
Q ss_pred chHHHHHHHHHHHHHHhCCCCCCceEEEeCcC-hHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEcccCcccCCcccCCc
Q 007802 307 GTASVVLAGILSALKLVGGTLADQTFLFLGAG-EAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLIVSSRKESLQ 385 (589)
Q Consensus 307 GTaaV~lAgll~Alr~~g~~l~d~riv~~GAG-sAg~GiA~ll~~~~~~~~G~s~eeA~~~i~~vD~~GLv~~~r~~~l~ 385 (589)
+-.-+|-+|++.=++-.+.+|+++++|++|-+ ..|.-+|.+|.. .|. .+.+++++ .
T Consensus 135 ~~~PcTp~avi~lL~~~~i~l~Gk~vvViGrS~~VG~Pla~lL~~-----~~A-------tVti~hs~-------T---- 191 (281)
T PRK14183 135 GFVPCTPLGVMELLEEYEIDVKGKDVCVVGASNIVGKPMAALLLN-----ANA-------TVDICHIF-------T---- 191 (281)
T ss_pred CCCCCcHHHHHHHHHHcCCCCCCCEEEEECCCCcchHHHHHHHHH-----CCC-------EEEEeCCC-------C----
Confidence 34567888899999999999999999999998 889999988854 242 34444442 1
Q ss_pred hhchhhhcccCCCCCHHHHHhccCCcEEEeecCCCCCCCHHHHH
Q 007802 386 HFKKPWAHEHAPIKSLLDAVKAIKPTMLMGTSGVGKTFTKEVVE 429 (589)
Q Consensus 386 ~~k~~fa~~~~~~~~L~e~V~~vkPtvLIG~S~~~g~Fteevv~ 429 (589)
++|.+.+++ +|++|-..+.++.|+.++|+
T Consensus 192 -------------~~l~~~~~~--ADIvV~AvGkp~~i~~~~vk 220 (281)
T PRK14183 192 -------------KDLKAHTKK--ADIVIVGVGKPNLITEDMVK 220 (281)
T ss_pred -------------cCHHHHHhh--CCEEEEecCcccccCHHHcC
Confidence 246788886 99999999999999999997
No 117
>PRK07411 hypothetical protein; Validated
Probab=87.06 E-value=1.6 Score=47.70 Aligned_cols=38 Identities=24% Similarity=0.342 Sum_probs=34.2
Q ss_pred CCCCCceEEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEccc
Q 007802 325 GTLADQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSK 373 (589)
Q Consensus 325 ~~l~d~riv~~GAGsAg~GiA~ll~~~~~~~~G~s~eeA~~~i~~vD~~ 373 (589)
.+|++.||+++|+|.-|.-+|+.|+.+ |+ ++|.++|.+
T Consensus 34 ~~L~~~~VlivG~GGlG~~va~~La~~-----Gv------g~l~lvD~D 71 (390)
T PRK07411 34 KRLKAASVLCIGTGGLGSPLLLYLAAA-----GI------GRIGIVDFD 71 (390)
T ss_pred HHHhcCcEEEECCCHHHHHHHHHHHHc-----CC------CEEEEECCC
Confidence 578899999999999999999999875 76 789999987
No 118
>PRK14190 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=86.94 E-value=2.7 Score=44.41 Aligned_cols=84 Identities=21% Similarity=0.287 Sum_probs=66.8
Q ss_pred hHHHHHHHHHHHHHHhCCCCCCceEEEeCcC-hHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEcccCcccCCcccCCch
Q 007802 308 TASVVLAGILSALKLVGGTLADQTFLFLGAG-EAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLIVSSRKESLQH 386 (589)
Q Consensus 308 TaaV~lAgll~Alr~~g~~l~d~riv~~GAG-sAg~GiA~ll~~~~~~~~G~s~eeA~~~i~~vD~~GLv~~~r~~~l~~ 386 (589)
-.-+|-.|++.-++-.+.++++++++++|.+ ..|.-+|.||.. .| ..+.+|+++
T Consensus 137 ~~PcTp~av~~lL~~~~i~l~Gk~vvViGrS~iVG~Pla~lL~~-----~~-------atVt~chs~------------- 191 (284)
T PRK14190 137 FLPCTPHGILELLKEYNIDISGKHVVVVGRSNIVGKPVGQLLLN-----EN-------ATVTYCHSK------------- 191 (284)
T ss_pred CCCCCHHHHHHHHHHcCCCCCCCEEEEECCCCccHHHHHHHHHH-----CC-------CEEEEEeCC-------------
Confidence 3567888899999999999999999999975 467778877753 24 246666542
Q ss_pred hchhhhcccCCCCCHHHHHhccCCcEEEeecCCCCCCCHHHHH
Q 007802 387 FKKPWAHEHAPIKSLLDAVKAIKPTMLMGTSGVGKTFTKEVVE 429 (589)
Q Consensus 387 ~k~~fa~~~~~~~~L~e~V~~vkPtvLIG~S~~~g~Fteevv~ 429 (589)
.++|.+.+++ +|++|...+.++.|++++|+
T Consensus 192 -----------t~~l~~~~~~--ADIvI~AvG~p~~i~~~~ik 221 (284)
T PRK14190 192 -----------TKNLAELTKQ--ADILIVAVGKPKLITADMVK 221 (284)
T ss_pred -----------chhHHHHHHh--CCEEEEecCCCCcCCHHHcC
Confidence 1368889987 99999999999999999996
No 119
>PRK14179 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=86.94 E-value=2.6 Score=44.62 Aligned_cols=84 Identities=23% Similarity=0.348 Sum_probs=67.2
Q ss_pred hHHHHHHHHHHHHHHhCCCCCCceEEEeCc-ChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEcccCcccCCcccCCch
Q 007802 308 TASVVLAGILSALKLVGGTLADQTFLFLGA-GEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLIVSSRKESLQH 386 (589)
Q Consensus 308 TaaV~lAgll~Alr~~g~~l~d~riv~~GA-GsAg~GiA~ll~~~~~~~~G~s~eeA~~~i~~vD~~GLv~~~r~~~l~~ 386 (589)
-.-+|-+|++.=++-.|.++++++++|+|. |..|.-+|.+|... |. .+.++.++ .
T Consensus 137 ~~PcTp~avi~lL~~~~i~l~Gk~v~vIG~S~ivG~Pla~lL~~~-----ga-------tVtv~~s~-------t----- 192 (284)
T PRK14179 137 MIPCTPAGIMEMFREYNVELEGKHAVVIGRSNIVGKPMAQLLLDK-----NA-------TVTLTHSR-------T----- 192 (284)
T ss_pred CcCCCHHHHHHHHHHhCCCCCCCEEEEECCCCcCcHHHHHHHHHC-----CC-------EEEEECCC-------C-----
Confidence 356777888999999999999999999999 99999999999753 53 34444221 1
Q ss_pred hchhhhcccCCCCCHHHHHhccCCcEEEeecCCCCCCCHHHHH
Q 007802 387 FKKPWAHEHAPIKSLLDAVKAIKPTMLMGTSGVGKTFTKEVVE 429 (589)
Q Consensus 387 ~k~~fa~~~~~~~~L~e~V~~vkPtvLIG~S~~~g~Fteevv~ 429 (589)
++|.+.+++ .|++|-.-+.++.+++++++
T Consensus 193 ------------~~l~~~~~~--ADIVI~avg~~~~v~~~~ik 221 (284)
T PRK14179 193 ------------RNLAEVARK--ADILVVAIGRGHFVTKEFVK 221 (284)
T ss_pred ------------CCHHHHHhh--CCEEEEecCccccCCHHHcc
Confidence 268889987 99999999999999988744
No 120
>TIGR01915 npdG NADPH-dependent F420 reductase. This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.
Probab=86.78 E-value=3 Score=41.44 Aligned_cols=96 Identities=14% Similarity=0.135 Sum_probs=59.6
Q ss_pred eEEEeC-cChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEcccCcccCCcccCCchhchhhh---cc-c----CCCCCH
Q 007802 331 TFLFLG-AGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLIVSSRKESLQHFKKPWA---HE-H----APIKSL 401 (589)
Q Consensus 331 riv~~G-AGsAg~GiA~ll~~~~~~~~G~s~eeA~~~i~~vD~~GLv~~~r~~~l~~~k~~fa---~~-~----~~~~~L 401 (589)
||.|+| +|..|..+|..+.+. | .+++++|++ .++ +......+. .. . ....+.
T Consensus 2 kI~IIGG~G~mG~ala~~L~~~-----G-------~~V~v~~r~----~~~---~~~l~~~~~~~~~~~g~~~~~~~~~~ 62 (219)
T TIGR01915 2 KIAVLGGTGDQGKGLALRLAKA-----G-------NKIIIGSRD----LEK---AEEAAAKALEELGHGGSDIKVTGADN 62 (219)
T ss_pred EEEEEcCCCHHHHHHHHHHHhC-----C-------CEEEEEEcC----HHH---HHHHHHHHHhhccccCCCceEEEeCh
Confidence 699997 899999999988652 4 467777763 111 211111111 10 0 011366
Q ss_pred HHHHhccCCcEEEeecCCCCCCCHHHHHHHHcCCCCcEEEecCCCCCC
Q 007802 402 LDAVKAIKPTMLMGTSGVGKTFTKEVVEAMASFNEKPVIFALSNPTSQ 449 (589)
Q Consensus 402 ~e~V~~vkPtvLIG~S~~~g~Fteevv~~Ma~~~erPIIFaLSNPt~~ 449 (589)
.|+++. +|++| ++..+ ...+++++.++..-...+|+.++||...
T Consensus 63 ~ea~~~--aDvVi-lavp~-~~~~~~l~~l~~~l~~~vvI~~~ngi~~ 106 (219)
T TIGR01915 63 AEAAKR--ADVVI-LAVPW-DHVLKTLESLRDELSGKLVISPVVPLAS 106 (219)
T ss_pred HHHHhc--CCEEE-EECCH-HHHHHHHHHHHHhccCCEEEEeccCcee
Confidence 788875 78776 55434 3457888888654444799999999853
No 121
>PRK14184 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=86.71 E-value=2.3 Score=45.00 Aligned_cols=88 Identities=16% Similarity=0.266 Sum_probs=66.2
Q ss_pred hHHHHHHHHHHHHHHhCCCCCCceEEEeCcCh-HHHHHHHHHHHHHHhccCCCHHhhcCeEEEEcccCcccCCcccCCch
Q 007802 308 TASVVLAGILSALKLVGGTLADQTFLFLGAGE-AGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLIVSSRKESLQH 386 (589)
Q Consensus 308 TaaV~lAgll~Alr~~g~~l~d~riv~~GAGs-Ag~GiA~ll~~~~~~~~G~s~eeA~~~i~~vD~~GLv~~~r~~~l~~ 386 (589)
-.-+|-+|++.=++-.+.+++++++|++|.+. .|.-+|.||... |. .+ ...+..++++
T Consensus 136 ~~PcTp~av~~lL~~~~i~l~Gk~vvViGrS~iVG~Pla~lL~~~-----~~-~~--~AtVt~~hs~------------- 194 (286)
T PRK14184 136 FRPCTPAGVMTLLERYGLSPAGKKAVVVGRSNIVGKPLALMLGAP-----GK-FA--NATVTVCHSR------------- 194 (286)
T ss_pred CCCCCHHHHHHHHHHhCCCCCCCEEEEECCCccchHHHHHHHhCC-----cc-cC--CCEEEEEeCC-------------
Confidence 35678889999999999999999999999764 677777777431 10 00 1235555543
Q ss_pred hchhhhcccCCCCCHHHHHhccCCcEEEeecCCCCCCCHHHHH
Q 007802 387 FKKPWAHEHAPIKSLLDAVKAIKPTMLMGTSGVGKTFTKEVVE 429 (589)
Q Consensus 387 ~k~~fa~~~~~~~~L~e~V~~vkPtvLIG~S~~~g~Fteevv~ 429 (589)
.++|.+.+++ +|++|+..+.++.+++++|+
T Consensus 195 -----------t~~l~~~~~~--ADIVI~AvG~p~li~~~~vk 224 (286)
T PRK14184 195 -----------TPDLAEECRE--ADFLFVAIGRPRFVTADMVK 224 (286)
T ss_pred -----------chhHHHHHHh--CCEEEEecCCCCcCCHHHcC
Confidence 1358899987 99999999999999999994
No 122
>cd01337 MDH_glyoxysomal_mitochondrial Glyoxysomal and mitochondrial malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are localized to the glycosome and mitochondria. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=86.51 E-value=2.4 Score=45.18 Aligned_cols=102 Identities=24% Similarity=0.303 Sum_probs=67.8
Q ss_pred eEEEeCc-ChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEcccCcccCCcccCCchhchhhhcccC--CCCCHHHHHhc
Q 007802 331 TFLFLGA-GEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLIVSSRKESLQHFKKPWAHEHA--PIKSLLDAVKA 407 (589)
Q Consensus 331 riv~~GA-GsAg~GiA~ll~~~~~~~~G~s~eeA~~~i~~vD~~GLv~~~r~~~l~~~k~~fa~~~~--~~~~L~e~V~~ 407 (589)
||.|+|| |..|..+|-.|+. .|+ -..+.|+|.+ + .++-.-+|.+-. .+.+-.. ..+++.+.++.
T Consensus 2 KI~IIGaaG~VG~~~a~~l~~-----~~~-----~~elvLiDi~-~-a~g~alDL~~~~-~~~~i~~~~~~~~~y~~~~d 68 (310)
T cd01337 2 KVAVLGAAGGIGQPLSLLLKL-----NPL-----VSELALYDIV-N-TPGVAADLSHIN-TPAKVTGYLGPEELKKALKG 68 (310)
T ss_pred EEEEECCCCHHHHHHHHHHHh-----CCC-----CcEEEEEecC-c-cceeehHhHhCC-CcceEEEecCCCchHHhcCC
Confidence 8999999 9999999987743 366 3679999998 3 222211244332 1111111 11346677876
Q ss_pred cCCcEEEeecCCC---CC-----------CCHHHHHHHHcCCCCcEEEecCCCC
Q 007802 408 IKPTMLMGTSGVG---KT-----------FTKEVVEAMASFNEKPVIFALSNPT 447 (589)
Q Consensus 408 vkPtvLIG~S~~~---g~-----------Fteevv~~Ma~~~erPIIFaLSNPt 447 (589)
.|++|=+.+.+ |- .-+++++.+.+++...+|+-.|||.
T Consensus 69 --aDivvitaG~~~k~g~tR~dll~~N~~i~~~i~~~i~~~~p~a~vivvtNPv 120 (310)
T cd01337 69 --ADVVVIPAGVPRKPGMTRDDLFNINAGIVRDLATAVAKACPKALILIISNPV 120 (310)
T ss_pred --CCEEEEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEccCch
Confidence 89888666654 21 2246778888999999999999998
No 123
>PRK08644 thiamine biosynthesis protein ThiF; Provisional
Probab=86.38 E-value=0.75 Score=46.03 Aligned_cols=38 Identities=29% Similarity=0.310 Sum_probs=33.6
Q ss_pred CCCCCceEEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEccc
Q 007802 325 GTLADQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSK 373 (589)
Q Consensus 325 ~~l~d~riv~~GAGsAg~GiA~ll~~~~~~~~G~s~eeA~~~i~~vD~~ 373 (589)
.+|++.||+++|+|..|..||+.|+.+ |+ .+|.++|.+
T Consensus 24 ~~L~~~~V~ViG~GglGs~ia~~La~~-----Gv------g~i~lvD~D 61 (212)
T PRK08644 24 EKLKKAKVGIAGAGGLGSNIAVALARS-----GV------GNLKLVDFD 61 (212)
T ss_pred HHHhCCCEEEECcCHHHHHHHHHHHHc-----CC------CeEEEEeCC
Confidence 467899999999999999999999763 76 789999997
No 124
>PRK14177 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=86.32 E-value=3.4 Score=43.74 Aligned_cols=83 Identities=18% Similarity=0.270 Sum_probs=64.9
Q ss_pred HHHHHHHHHHHHHHhCCCCCCceEEEeCcC-hHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEcccCcccCCcccCCchh
Q 007802 309 ASVVLAGILSALKLVGGTLADQTFLFLGAG-EAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLIVSSRKESLQHF 387 (589)
Q Consensus 309 aaV~lAgll~Alr~~g~~l~d~riv~~GAG-sAg~GiA~ll~~~~~~~~G~s~eeA~~~i~~vD~~GLv~~~r~~~l~~~ 387 (589)
.-+|-.|++.=++-.+.+++++++|++|.+ ..|.-+|.||.. .| ..+.+|+++
T Consensus 139 ~PcTp~avi~ll~~y~i~l~Gk~vvViGrS~iVGkPla~lL~~-----~~-------atVt~chs~-------------- 192 (284)
T PRK14177 139 LPCTPYGMVLLLKEYGIDVTGKNAVVVGRSPILGKPMAMLLTE-----MN-------ATVTLCHSK-------------- 192 (284)
T ss_pred CCCCHHHHHHHHHHhCCCCCCCEEEEECCCCcchHHHHHHHHH-----CC-------CEEEEeCCC--------------
Confidence 345667888888889999999999999975 467788877753 24 246666653
Q ss_pred chhhhcccCCCCCHHHHHhccCCcEEEeecCCCCCCCHHHHH
Q 007802 388 KKPWAHEHAPIKSLLDAVKAIKPTMLMGTSGVGKTFTKEVVE 429 (589)
Q Consensus 388 k~~fa~~~~~~~~L~e~V~~vkPtvLIG~S~~~g~Fteevv~ 429 (589)
.++|.+.+++ +|++|...+.++.++.|+|+
T Consensus 193 ----------T~~l~~~~~~--ADIvIsAvGk~~~i~~~~ik 222 (284)
T PRK14177 193 ----------TQNLPSIVRQ--ADIIVGAVGKPEFIKADWIS 222 (284)
T ss_pred ----------CCCHHHHHhh--CCEEEEeCCCcCccCHHHcC
Confidence 1357788886 99999999999999999997
No 125
>PF02882 THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; InterPro: IPR020631 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF). Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the NAD(P)-binding domain found in these enzymes.; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 1B0A_A 2C2X_B 2C2Y_A 3NGL_C 3NGX_A 4A26_B 1EDZ_A 1EE9_A 3P2O_B 1DIA_A ....
Probab=86.29 E-value=3.4 Score=40.12 Aligned_cols=84 Identities=17% Similarity=0.275 Sum_probs=57.9
Q ss_pred hHHHHHHHHHHHHHHhCCCCCCceEEEeCcCh-HHHHHHHHHHHHHHhccCCCHHhhcCeEEEEcccCcccCCcccCCch
Q 007802 308 TASVVLAGILSALKLVGGTLADQTFLFLGAGE-AGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLIVSSRKESLQH 386 (589)
Q Consensus 308 TaaV~lAgll~Alr~~g~~l~d~riv~~GAGs-Ag~GiA~ll~~~~~~~~G~s~eeA~~~i~~vD~~GLv~~~r~~~l~~ 386 (589)
---+|-.|++.-++..+.++++.+++++|.+. .|.-+|.||.. .|. .+.+++++
T Consensus 15 ~~PcTp~aii~lL~~~~~~l~Gk~v~VvGrs~~VG~Pla~lL~~-----~~a-------tVt~~h~~------------- 69 (160)
T PF02882_consen 15 FVPCTPLAIIELLEYYGIDLEGKKVVVVGRSNIVGKPLAMLLLN-----KGA-------TVTICHSK------------- 69 (160)
T ss_dssp S--HHHHHHHHHHHHTT-STTT-EEEEE-TTTTTHHHHHHHHHH-----TT--------EEEEE-TT-------------
T ss_pred CcCCCHHHHHHHHHhcCCCCCCCEEEEECCcCCCChHHHHHHHh-----CCC-------eEEeccCC-------------
Confidence 34567888999999999999999999999985 88888887754 242 24445543
Q ss_pred hchhhhcccCCCCCHHHHHhccCCcEEEeecCCCCCCCHHHHH
Q 007802 387 FKKPWAHEHAPIKSLLDAVKAIKPTMLMGTSGVGKTFTKEVVE 429 (589)
Q Consensus 387 ~k~~fa~~~~~~~~L~e~V~~vkPtvLIG~S~~~g~Fteevv~ 429 (589)
.++|.+.+++ +|++|-..+.++.++.+.||
T Consensus 70 -----------T~~l~~~~~~--ADIVVsa~G~~~~i~~~~ik 99 (160)
T PF02882_consen 70 -----------TKNLQEITRR--ADIVVSAVGKPNLIKADWIK 99 (160)
T ss_dssp -----------SSSHHHHHTT--SSEEEE-SSSTT-B-GGGS-
T ss_pred -----------CCcccceeee--ccEEeeeecccccccccccc
Confidence 1357778875 99999999999999999886
No 126
>PRK12550 shikimate 5-dehydrogenase; Reviewed
Probab=85.99 E-value=1.7 Score=45.28 Aligned_cols=56 Identities=16% Similarity=0.114 Sum_probs=40.7
Q ss_pred CceeccCCCchHHHHHHHHHHHHHHhCCCCCCceEEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEccc
Q 007802 298 HLVFNDDIQGTASVVLAGILSALKLVGGTLADQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSK 373 (589)
Q Consensus 298 ~~~FnDDiQGTaaV~lAgll~Alr~~g~~l~d~riv~~GAGsAg~GiA~ll~~~~~~~~G~s~eeA~~~i~~vD~~ 373 (589)
+.=||-|. .|++.+++..+.+. +.++|++|||-|+.+|+-.|.+ .|. ++|+++++.
T Consensus 100 l~G~NTD~--------~Gf~~~L~~~~~~~-~~~vlilGaGGaarAi~~aL~~-----~g~------~~i~i~nR~ 155 (272)
T PRK12550 100 LKAYNTDY--------IAIAKLLASYQVPP-DLVVALRGSGGMAKAVAAALRD-----AGF------TDGTIVARN 155 (272)
T ss_pred EEEEecCH--------HHHHHHHHhcCCCC-CCeEEEECCcHHHHHHHHHHHH-----CCC------CEEEEEeCC
Confidence 44556564 45677777666653 4699999999999998877654 365 679999885
No 127
>cd01336 MDH_cytoplasmic_cytosolic Cytoplasmic and cytosolic Malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are eukaryotic MDHs localized to the cytoplasm and cytosol. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=85.98 E-value=4.6 Score=43.06 Aligned_cols=132 Identities=16% Similarity=0.187 Sum_probs=76.7
Q ss_pred eEEEeCc-ChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEcccCcc--cCCcccCCchhchhhhcccCCCCCHHHHHhc
Q 007802 331 TFLFLGA-GEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLI--VSSRKESLQHFKKPWAHEHAPIKSLLDAVKA 407 (589)
Q Consensus 331 riv~~GA-GsAg~GiA~ll~~~~~~~~G~s~eeA~~~i~~vD~~GLv--~~~r~~~l~~~k~~fa~~~~~~~~L~e~V~~ 407 (589)
||+|.|| |..|..+|..|+.. |+---+....+.++|.+.-. .++..-++.+..-++..+.....++.++++.
T Consensus 4 kV~I~GAaG~VG~~la~~L~~~-----~~~~~~~~~el~L~D~~~~~~~~~g~~~Dl~d~~~~~~~~~~~~~~~~~~l~~ 78 (325)
T cd01336 4 RVLVTGAAGQIAYSLLPMIAKG-----DVFGPDQPVILHLLDIPPALKALEGVVMELQDCAFPLLKSVVATTDPEEAFKD 78 (325)
T ss_pred EEEEECCCCHHHHHHHHHHHhC-----cccCCCCCcEEEEEEcCCccccccceeeehhhccccccCCceecCCHHHHhCC
Confidence 6999999 99999999987652 44100011379999985421 1111001222111121111112578888986
Q ss_pred cCCcEEEeecCCCCC--CC------------HHHHHHHHcCC-CCcEEEecCCCCCCCCCCHHHHhccccC--cEEEeeC
Q 007802 408 IKPTMLMGTSGVGKT--FT------------KEVVEAMASFN-EKPVIFALSNPTSQSECTAEEAYTWSKG--QAIFASG 470 (589)
Q Consensus 408 vkPtvLIG~S~~~g~--Ft------------eevv~~Ma~~~-erPIIFaLSNPt~~~E~t~eda~~wT~G--raifAsG 470 (589)
+|++|=+.+.+.. .| +++++.|.+++ ..-||+-.|||. ....--+++++.| +-.|.||
T Consensus 79 --aDiVI~tAG~~~~~~~~R~~l~~~N~~i~~~i~~~i~~~~~~~~iiivvsNPv---D~~t~~~~k~~~~~~~~~ig~g 153 (325)
T cd01336 79 --VDVAILVGAMPRKEGMERKDLLKANVKIFKEQGEALDKYAKKNVKVLVVGNPA---NTNALILLKYAPSIPKENFTAL 153 (325)
T ss_pred --CCEEEEeCCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEecCcH---HHHHHHHHHHcCCCCHHHEEee
Confidence 9998866665422 23 56778888886 689999999997 3444445555422 1125555
Q ss_pred CC
Q 007802 471 SP 472 (589)
Q Consensus 471 SP 472 (589)
+=
T Consensus 154 t~ 155 (325)
T cd01336 154 TR 155 (325)
T ss_pred eh
Confidence 43
No 128
>TIGR01408 Ube1 ubiquitin-activating enzyme E1. This model represents the full length, over a thousand amino acids, of a multicopy family of eukaryotic proteins, many of which are designated ubiquitin-activating enzyme E1. Members have two copies of the ThiF family domain (pfam00899), a repeat found in ubiquitin-activating proteins (pfam02134), and other regions.
Probab=85.97 E-value=0.4 Score=58.37 Aligned_cols=124 Identities=23% Similarity=0.319 Sum_probs=70.1
Q ss_pred HHHHHHHHHHhcCCceeeEeecCCCccHH------------HHHHHHcCCCceeccCCCchHHHHHHHHHHHHHHhCCCC
Q 007802 260 LQEFMTAVKQNYGEKVLIQFEDFANHNAF------------ELLSKYSSSHLVFNDDIQGTASVVLAGILSALKLVGGTL 327 (589)
Q Consensus 260 idefv~av~~~fGp~~lIq~EDf~~~~Af------------~iL~ryr~~~~~FnDDiQGTaaV~lAgll~Alr~~g~~l 327 (589)
..|.++++..+|-| +=||.-|..-.+. ..-+||..++.+|..+. -.+|
T Consensus 358 aQEViKaisgKf~P--i~q~~~~D~~e~l~~~~~~~~~~~~~~~~RYdrqi~l~G~~~------------------Q~kL 417 (1008)
T TIGR01408 358 SQEVLKAVTGKFSP--LCQWFYFDSAESLPSLGKPECEEFLPRGDRYDAQIAVFGDTF------------------QQKL 417 (1008)
T ss_pred HHHHHHHhcCCCCC--ceeeEEeehhhhCCcccCcchhhccchhhhhHHHHHHcCHHH------------------HHHH
Confidence 36777788888866 1245444332222 12345544444443222 2468
Q ss_pred CCceEEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEcccCcccCCcccCCchhchhhhcccCC---CCCHHHH
Q 007802 328 ADQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLIVSSRKESLQHFKKPWAHEHAP---IKSLLDA 404 (589)
Q Consensus 328 ~d~riv~~GAGsAg~GiA~ll~~~~~~~~G~s~eeA~~~i~~vD~~GLv~~~r~~~l~~~k~~fa~~~~~---~~~L~e~ 404 (589)
++.||+++|+|..|+-+++.|+.+ |+.-. ...+|.++|-+ .|..+ +|+. |--|-.++-+ .....+.
T Consensus 418 ~~~kVlvvGaGGlG~e~lknLal~-----Gv~~~-~~G~i~IvD~D-~Ve~S---NLnR-QfLf~~~dIGk~Ka~vaa~~ 486 (1008)
T TIGR01408 418 QNLNIFLVGCGAIGCEMLKNFALM-----GVGTG-KKGMITVTDPD-LIEKS---NLNR-QFLFRPHHIGKPKSYTAADA 486 (1008)
T ss_pred hhCcEEEECCChHHHHHHHHHHHh-----CCCcC-CCCeEEEECCC-Eeccc---ccCc-CcCCChhHcCcHHHHHHHHH
Confidence 899999999999999999999875 65211 13689999987 23322 3542 2122111111 1245566
Q ss_pred HhccCCcEEE
Q 007802 405 VKAIKPTMLM 414 (589)
Q Consensus 405 V~~vkPtvLI 414 (589)
++...|++=|
T Consensus 487 l~~~Np~v~I 496 (1008)
T TIGR01408 487 TLKINPQIKI 496 (1008)
T ss_pred HHHHCCCCEE
Confidence 6666676554
No 129
>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1. Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.
Probab=85.76 E-value=0.8 Score=45.29 Aligned_cols=77 Identities=16% Similarity=0.265 Sum_probs=53.7
Q ss_pred CCCCCceEEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEcccCcccCCcccCCchhchhhhcc-c---CCCCC
Q 007802 325 GTLADQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLIVSSRKESLQHFKKPWAHE-H---APIKS 400 (589)
Q Consensus 325 ~~l~d~riv~~GAGsAg~GiA~ll~~~~~~~~G~s~eeA~~~i~~vD~~GLv~~~r~~~l~~~k~~fa~~-~---~~~~~ 400 (589)
++|++.||+++|+|.-|.-+|+.|+.+ |+ ++|.++|.+- |..+ +|+.+ .|... . +....
T Consensus 17 ~~L~~s~VlIiG~gglG~evak~La~~-----GV------g~i~lvD~d~-ve~s---nL~rq--fl~~~~diG~~Ka~a 79 (197)
T cd01492 17 KRLRSARILLIGLKGLGAEIAKNLVLS-----GI------GSLTILDDRT-VTEE---DLGAQ--FLIPAEDLGQNRAEA 79 (197)
T ss_pred HHHHhCcEEEEcCCHHHHHHHHHHHHc-----CC------CEEEEEECCc-ccHh---hCCCC--ccccHHHcCchHHHH
Confidence 568899999999999999999999764 86 8899999983 2221 24321 12221 1 11135
Q ss_pred HHHHHhccCCcEEEeecC
Q 007802 401 LLDAVKAIKPTMLMGTSG 418 (589)
Q Consensus 401 L~e~V~~vkPtvLIG~S~ 418 (589)
+.+.++...|++-|=...
T Consensus 80 ~~~~L~~lNp~v~i~~~~ 97 (197)
T cd01492 80 SLERLRALNPRVKVSVDT 97 (197)
T ss_pred HHHHHHHHCCCCEEEEEe
Confidence 788899999998775543
No 130
>TIGR01758 MDH_euk_cyt malate dehydrogenase, NAD-dependent. This model represents the NAD-dependent cytosolic malate dehydrogenase from eukaryotes. The enzyme from pig has been studied by X-ray crystallography
Probab=85.74 E-value=5 Score=42.86 Aligned_cols=134 Identities=15% Similarity=0.178 Sum_probs=79.0
Q ss_pred eEEEeCc-ChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEcccCcc--cCCcccCCchhchhhhcccCCCCCHHHHHhc
Q 007802 331 TFLFLGA-GEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLI--VSSRKESLQHFKKPWAHEHAPIKSLLDAVKA 407 (589)
Q Consensus 331 riv~~GA-GsAg~GiA~ll~~~~~~~~G~s~eeA~~~i~~vD~~GLv--~~~r~~~l~~~k~~fa~~~~~~~~L~e~V~~ 407 (589)
||.|+|| |..|..+|..|+.. |+-..+..-.+.|+|.+.-. .++..-+|.+...++...-....+..+.+++
T Consensus 1 ~V~IiGaaG~VG~~~a~~l~~~-----~~~~~~~e~el~LiD~~~~~~~a~g~~~Dl~d~~~~~~~~~~~~~~~~~~~~~ 75 (324)
T TIGR01758 1 RVVVTGAAGQIGYALLPMIARG-----RMLGKDQPIILHLLDIPPAMKVLEGVVMELMDCAFPLLDGVVPTHDPAVAFTD 75 (324)
T ss_pred CEEEECCCcHHHHHHHHHHHhc-----cccCCCCccEEEEEecCCcccccceeEeehhcccchhcCceeccCChHHHhCC
Confidence 6899999 99999999887642 44100000169999974221 1111112433332332111111255677776
Q ss_pred cCCcEEEeecCCCCC--C------------CHHHHHHHHcC-CCCcEEEecCCCCCCCCCCHHHHhccccC--cEEEeeC
Q 007802 408 IKPTMLMGTSGVGKT--F------------TKEVVEAMASF-NEKPVIFALSNPTSQSECTAEEAYTWSKG--QAIFASG 470 (589)
Q Consensus 408 vkPtvLIG~S~~~g~--F------------teevv~~Ma~~-~erPIIFaLSNPt~~~E~t~eda~~wT~G--raifAsG 470 (589)
.|++|=+.+.+.- - =+++.+.|.++ +..-||+-.|||. .+..--+++++.+ +-+|.||
T Consensus 76 --aDiVVitAG~~~~~~~tr~~ll~~N~~i~k~i~~~i~~~~~~~~iiivvsNPv---Dv~t~v~~~~sg~~~~~vig~g 150 (324)
T TIGR01758 76 --VDVAILVGAFPRKEGMERRDLLSKNVKIFKEQGRALDKLAKKDCKVLVVGNPA---NTNALVLSNYAPSIPPKNFSAL 150 (324)
T ss_pred --CCEEEEcCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEeCCcH---HHHHHHHHHHcCCCCcceEEEe
Confidence 8888866665421 1 24678889999 4899999999997 4444455555532 2278888
Q ss_pred CCCC
Q 007802 471 SPFD 474 (589)
Q Consensus 471 SPf~ 474 (589)
+=.+
T Consensus 151 t~LD 154 (324)
T TIGR01758 151 TRLD 154 (324)
T ss_pred eehH
Confidence 6544
No 131
>PRK14188 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=85.73 E-value=2.8 Score=44.50 Aligned_cols=82 Identities=17% Similarity=0.284 Sum_probs=64.0
Q ss_pred hHHHHHHHHHHHHHHhCCCCCCceEEEeC-cChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEcccCcccCCcccCCch
Q 007802 308 TASVVLAGILSALKLVGGTLADQTFLFLG-AGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLIVSSRKESLQH 386 (589)
Q Consensus 308 TaaV~lAgll~Alr~~g~~l~d~riv~~G-AGsAg~GiA~ll~~~~~~~~G~s~eeA~~~i~~vD~~GLv~~~r~~~l~~ 386 (589)
-.-+|-.|++.=++-.+.++++++|+|+| .|..|..+|.+|... |. .+.+++++ ..
T Consensus 137 ~~PcTp~ai~~ll~~~~i~~~Gk~V~viGrs~~mG~PmA~~L~~~-----g~-------tVtv~~~r-------T~---- 193 (296)
T PRK14188 137 LVPCTPLGCMMLLRRVHGDLSGLNAVVIGRSNLVGKPMAQLLLAA-----NA-------TVTIAHSR-------TR---- 193 (296)
T ss_pred CcCCCHHHHHHHHHHhCCCCCCCEEEEEcCCcchHHHHHHHHHhC-----CC-------EEEEECCC-------CC----
Confidence 34667788888889999999999999999 999999999999752 53 45655432 11
Q ss_pred hchhhhcccCCCCCHHHHHhccCCcEEEeecCCCCCCCHHH
Q 007802 387 FKKPWAHEHAPIKSLLDAVKAIKPTMLMGTSGVGKTFTKEV 427 (589)
Q Consensus 387 ~k~~fa~~~~~~~~L~e~V~~vkPtvLIG~S~~~g~Fteev 427 (589)
+|.|++++ .|++|-+-+.++.+++++
T Consensus 194 -------------~l~e~~~~--ADIVIsavg~~~~v~~~~ 219 (296)
T PRK14188 194 -------------DLPAVCRR--ADILVAAVGRPEMVKGDW 219 (296)
T ss_pred -------------CHHHHHhc--CCEEEEecCChhhcchhe
Confidence 37788886 899998888887777765
No 132
>PRK08374 homoserine dehydrogenase; Provisional
Probab=85.62 E-value=3.7 Score=44.00 Aligned_cols=106 Identities=18% Similarity=0.219 Sum_probs=64.3
Q ss_pred ceEEEeCcChHHHHHHHHHHH---HHHhccCCCHHhhcCeEEEEcccCcccCCcccCCc---hhchhhhccc------C-
Q 007802 330 QTFLFLGAGEAGTGIAELIAL---EMSKQTKAPIEEARKKIWLVDSKGLIVSSRKESLQ---HFKKPWAHEH------A- 396 (589)
Q Consensus 330 ~riv~~GAGsAg~GiA~ll~~---~~~~~~G~s~eeA~~~i~~vD~~GLv~~~r~~~l~---~~k~~fa~~~------~- 396 (589)
.+|.++|.|..|.+++++|.+ .+.++.|.. -+=+-+.|++|-+...+.-++. ++++.+.... .
T Consensus 3 i~VaIiG~GnVG~~~~~~L~~~~~~l~~~~G~~----l~VvaV~ds~~~~~~~~Gid~~~l~~~~~~~~~~~~~~~~~~~ 78 (336)
T PRK08374 3 VKVSIFGFGNVGRAVAEVLAEKSRVFKERYGVE----LKVVSITDTSGTIWLPEDIDLREAKEVKENFGKLSNWGNDYEV 78 (336)
T ss_pred eEEEEECCCHHHHHHHHHHHHhHHHHHHHcCCC----EEEEEEEeCCccccCCCCCChHHHHHhhhccCchhhccccccc
Confidence 589999999999999999976 233333532 1224567999988765531121 2222222100 0
Q ss_pred CCCCHHHHHhccCCcEEEeecCCCCCCCHHHHHHHHcCCCCcEEEe
Q 007802 397 PIKSLLDAVKAIKPTMLMGTSGVGKTFTKEVVEAMASFNEKPVIFA 442 (589)
Q Consensus 397 ~~~~L~e~V~~vkPtvLIG~S~~~g~Fteevv~~Ma~~~erPIIFa 442 (589)
..-++.|.++...+||+|-+++.. ...+-+.+.+. +..++|.+
T Consensus 79 ~~~~~~ell~~~~~DVvVd~t~~~-~a~~~~~~al~--~G~~VVta 121 (336)
T PRK08374 79 YNFSPEEIVEEIDADIVVDVTNDK-NAHEWHLEALK--EGKSVVTS 121 (336)
T ss_pred cCCCHHHHHhcCCCCEEEECCCcH-HHHHHHHHHHh--hCCcEEEC
Confidence 012788888878899999998633 33333444444 46788863
No 133
>PRK07634 pyrroline-5-carboxylate reductase; Reviewed
Probab=85.26 E-value=2.3 Score=42.26 Aligned_cols=118 Identities=10% Similarity=0.134 Sum_probs=68.5
Q ss_pred CCceEEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEcccCcccCCcccCCchhchhhhcccCCCCCHHHHHhc
Q 007802 328 ADQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLIVSSRKESLQHFKKPWAHEHAPIKSLLDAVKA 407 (589)
Q Consensus 328 ~d~riv~~GAGsAg~GiA~ll~~~~~~~~G~s~eeA~~~i~~vD~~GLv~~~r~~~l~~~k~~fa~~~~~~~~L~e~V~~ 407 (589)
++.||.|+|+|..|..++..+... |.. -.++++.+++. + .+.+...+..|- .....++.+++++
T Consensus 3 ~~~kI~iIG~G~mg~ala~~l~~~-----~~~---~~~~i~~~~~~-----~-~~~~~~~~~~~~--~~~~~~~~~~~~~ 66 (245)
T PRK07634 3 KKHRILFIGAGRMAEAIFSGLLKT-----SKE---YIEEIIVSNRS-----N-VEKLDQLQARYN--VSTTTDWKQHVTS 66 (245)
T ss_pred CCCeEEEECcCHHHHHHHHHHHhC-----CCC---CcCeEEEECCC-----C-HHHHHHHHHHcC--cEEeCChHHHHhc
Confidence 457899999999999999887642 310 11346655542 0 111222222221 1122568888875
Q ss_pred cCCcEEEeecCCCCCCCHHHHHHHHcCCCCcEEEecCCCCCCCCCCHHHHhcccc-CcEEEeeC
Q 007802 408 IKPTMLMGTSGVGKTFTKEVVEAMASFNEKPVIFALSNPTSQSECTAEEAYTWSK-GQAIFASG 470 (589)
Q Consensus 408 vkPtvLIG~S~~~g~Fteevv~~Ma~~~erPIIFaLSNPt~~~E~t~eda~~wT~-GraifAsG 470 (589)
.|++| ++..+. .-+++++.++.+....+|+.++.-.+ .++.-+|.+ +..++-++
T Consensus 67 --~DiVi-iavp~~-~~~~v~~~l~~~~~~~~vis~~~gi~-----~~~l~~~~~~~~~v~r~~ 121 (245)
T PRK07634 67 --VDTIV-LAMPPS-AHEELLAELSPLLSNQLVVTVAAGIG-----PSYLEERLPKGTPVAWIM 121 (245)
T ss_pred --CCEEE-EecCHH-HHHHHHHHHHhhccCCEEEEECCCCC-----HHHHHHHcCCCCeEEEEC
Confidence 78776 555454 45889999886544557777776653 334444433 34455565
No 134
>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating). This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.
Probab=85.03 E-value=2.9 Score=43.54 Aligned_cols=98 Identities=12% Similarity=0.172 Sum_probs=62.8
Q ss_pred eEEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEcccCcccCCcccCCchhchhhhcc-cCCCCCHHHHHhcc-
Q 007802 331 TFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLIVSSRKESLQHFKKPWAHE-HAPIKSLLDAVKAI- 408 (589)
Q Consensus 331 riv~~GAGsAg~GiA~ll~~~~~~~~G~s~eeA~~~i~~vD~~GLv~~~r~~~l~~~k~~fa~~-~~~~~~L~e~V~~v- 408 (589)
||-|+|.|..|..+|..+... | .++.++|++ .. .... ++.. .....++.|.++..
T Consensus 2 ~Ig~IGlG~mG~~la~~L~~~-----g-------~~V~~~dr~----~~---~~~~----l~~~g~~~~~s~~~~~~~~~ 58 (298)
T TIGR00872 2 QLGLIGLGRMGANIVRRLAKR-----G-------HDCVGYDHD----QD---AVKA----MKEDRTTGVANLRELSQRLS 58 (298)
T ss_pred EEEEEcchHHHHHHHHHHHHC-----C-------CEEEEEECC----HH---HHHH----HHHcCCcccCCHHHHHhhcC
Confidence 689999999999999988652 5 356666763 11 1111 2211 11234676766543
Q ss_pred CCcEEEeecCCCCCCCHHHHHHHHcCC-CCcEEEecCCCCCCCCCCHH
Q 007802 409 KPTMLMGTSGVGKTFTKEVVEAMASFN-EKPVIFALSNPTSQSECTAE 455 (589)
Q Consensus 409 kPtvLIG~S~~~g~Fteevv~~Ma~~~-erPIIFaLSNPt~~~E~t~e 455 (589)
+|+++| ++...+ ..+++++.++.+- +..||+-+||.. ++-+-+
T Consensus 59 ~~dvIi-~~vp~~-~~~~v~~~l~~~l~~g~ivid~st~~--~~~t~~ 102 (298)
T TIGR00872 59 APRVVW-VMVPHG-IVDAVLEELAPTLEKGDIVIDGGNSY--YKDSLR 102 (298)
T ss_pred CCCEEE-EEcCch-HHHHHHHHHHhhCCCCCEEEECCCCC--cccHHH
Confidence 588887 444455 8899998887653 567999999865 444444
No 135
>PLN02306 hydroxypyruvate reductase
Probab=84.95 E-value=7.5 Score=42.69 Aligned_cols=196 Identities=19% Similarity=0.202 Sum_probs=108.5
Q ss_pred cCCCceeccCC---CchHHHHHHHHHHHHHH---------------------hCCCCCCceEEEeCcChHHHHHHHHHHH
Q 007802 295 SSSHLVFNDDI---QGTASVVLAGILSALKL---------------------VGGTLADQTFLFLGAGEAGTGIAELIAL 350 (589)
Q Consensus 295 r~~~~~FnDDi---QGTaaV~lAgll~Alr~---------------------~g~~l~d~riv~~GAGsAg~GiA~ll~~ 350 (589)
+..+.+.|--- ..+|=-+++-+|+.+|- .|..|.++++.|+|.|..|..+|+++..
T Consensus 107 ~~gI~V~n~pg~~~~~VAE~al~liLal~R~i~~~~~~~~~g~w~~~~~~~~~g~~L~gktvGIiG~G~IG~~vA~~l~~ 186 (386)
T PLN02306 107 KYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYEGWLPHLFVGNLLKGQTVGVIGAGRIGSAYARMMVE 186 (386)
T ss_pred HCCCEEEECCCcCHHHHHHHHHHHHHHHHhChHHHHHHHHcCCCccccccccCCcCCCCCEEEEECCCHHHHHHHHHHHh
Confidence 34666666421 23444456666666542 1346889999999999999999999865
Q ss_pred HHHhccCCCHHhhcCeEEEEcccCcccCCcccCCchhchhhhc--------c--cCCCCCHHHHHhccCCcEEEee----
Q 007802 351 EMSKQTKAPIEEARKKIWLVDSKGLIVSSRKESLQHFKKPWAH--------E--HAPIKSLLDAVKAIKPTMLMGT---- 416 (589)
Q Consensus 351 ~~~~~~G~s~eeA~~~i~~vD~~GLv~~~r~~~l~~~k~~fa~--------~--~~~~~~L~e~V~~vkPtvLIG~---- 416 (589)
+| |+ +++.+|+..- . .+......+.. + .....+|.|+++. .|+++-.
T Consensus 187 ~f----Gm-------~V~~~d~~~~---~---~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~ell~~--sDiV~lh~Plt 247 (386)
T PLN02306 187 GF----KM-------NLIYYDLYQS---T---RLEKFVTAYGQFLKANGEQPVTWKRASSMEEVLRE--ADVISLHPVLD 247 (386)
T ss_pred cC----CC-------EEEEECCCCc---h---hhhhhhhhhcccccccccccccccccCCHHHHHhh--CCEEEEeCCCC
Confidence 43 54 5888887421 0 01110001100 0 0112489999986 8998873
Q ss_pred cCCCCCCCHHHHHHHHcCCCCcEEEecCCCCCCCCCCHHHHhcc--ccCcEEEeeCC-CC--CcceeCCeeeCCCCcccc
Q 007802 417 SGVGKTFTKEVVEAMASFNEKPVIFALSNPTSQSECTAEEAYTW--SKGQAIFASGS-PF--DPVEYNGKVFVPGQGNNA 491 (589)
Q Consensus 417 S~~~g~Fteevv~~Ma~~~erPIIFaLSNPt~~~E~t~eda~~w--T~GraifAsGS-Pf--~pv~~~G~~~~p~Q~NN~ 491 (589)
....|.|+++.++.|. +.-++.=.| +.++-=|+|+.- ..|+.- +.|. =| +|. .+. .--+..|+
T Consensus 248 ~~T~~lin~~~l~~MK---~ga~lIN~a----RG~lVDe~AL~~AL~sg~i~-gAaLDVf~~EP~-~~~---~L~~~pNV 315 (386)
T PLN02306 248 KTTYHLINKERLALMK---KEAVLVNAS----RGPVIDEVALVEHLKANPMF-RVGLDVFEDEPY-MKP---GLADMKNA 315 (386)
T ss_pred hhhhhhcCHHHHHhCC---CCeEEEECC----CccccCHHHHHHHHHhCCee-EEEEeCCCCCCC-Ccc---hHhhCCCE
Confidence 2234799999999995 455666555 455555544422 246543 3221 01 111 010 11245688
Q ss_pred ccchhhhHHHHHhCCcccCHHHHHHHHHHHHhccC
Q 007802 492 YIFPGLGLGLIISGAIRVRDEMLLAASEALAAQVT 526 (589)
Q Consensus 492 ~iFPGiglG~~~~~a~~Itd~m~~aAA~aLA~~v~ 526 (589)
.+-|=+|-...- -...|...+++-+.....
T Consensus 316 ilTPHiag~T~e-----~~~~~~~~~~~ni~~~~~ 345 (386)
T PLN02306 316 VVVPHIASASKW-----TREGMATLAALNVLGKLK 345 (386)
T ss_pred EECCccccCcHH-----HHHHHHHHHHHHHHHHHc
Confidence 888887732211 123444445555555443
No 136
>PRK14172 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=84.90 E-value=3.8 Score=43.22 Aligned_cols=83 Identities=19% Similarity=0.292 Sum_probs=66.7
Q ss_pred HHHHHHHHHHHHHHhCCCCCCceEEEeCcC-hHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEcccCcccCCcccCCchh
Q 007802 309 ASVVLAGILSALKLVGGTLADQTFLFLGAG-EAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLIVSSRKESLQHF 387 (589)
Q Consensus 309 aaV~lAgll~Alr~~g~~l~d~riv~~GAG-sAg~GiA~ll~~~~~~~~G~s~eeA~~~i~~vD~~GLv~~~r~~~l~~~ 387 (589)
.-+|-+|++.=++-.+.+|++++++++|-+ ..|.-+|.||.. .|. .+.+|+++
T Consensus 138 ~PcTp~av~~lL~~~~i~l~Gk~vvViGrS~~VGkPla~lL~~-----~~A-------tVt~chs~-------------- 191 (278)
T PRK14172 138 LPCTPNSVITLIKSLNIDIEGKEVVVIGRSNIVGKPVAQLLLN-----ENA-------TVTICHSK-------------- 191 (278)
T ss_pred cCCCHHHHHHHHHHhCCCCCCCEEEEECCCccchHHHHHHHHH-----CCC-------EEEEeCCC--------------
Confidence 567888899999999999999999999975 468888887753 242 46666653
Q ss_pred chhhhcccCCCCCHHHHHhccCCcEEEeecCCCCCCCHHHHH
Q 007802 388 KKPWAHEHAPIKSLLDAVKAIKPTMLMGTSGVGKTFTKEVVE 429 (589)
Q Consensus 388 k~~fa~~~~~~~~L~e~V~~vkPtvLIG~S~~~g~Fteevv~ 429 (589)
.++|.+.+++ +|++|-..+.++.|++|+|+
T Consensus 192 ----------T~~l~~~~~~--ADIvIsAvGkp~~i~~~~ik 221 (278)
T PRK14172 192 ----------TKNLKEVCKK--ADILVVAIGRPKFIDEEYVK 221 (278)
T ss_pred ----------CCCHHHHHhh--CCEEEEcCCCcCccCHHHcC
Confidence 1357888886 99999999999999999997
No 137
>PRK14174 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=84.79 E-value=3.5 Score=43.84 Aligned_cols=87 Identities=17% Similarity=0.276 Sum_probs=65.3
Q ss_pred HHHHHHHHHHHHHHhCCCCCCceEEEeCcCh-HHHHHHHHHHHHHHhccCCCHHhhcCeEEEEcccCcccCCcccCCchh
Q 007802 309 ASVVLAGILSALKLVGGTLADQTFLFLGAGE-AGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLIVSSRKESLQHF 387 (589)
Q Consensus 309 aaV~lAgll~Alr~~g~~l~d~riv~~GAGs-Ag~GiA~ll~~~~~~~~G~s~eeA~~~i~~vD~~GLv~~~r~~~l~~~ 387 (589)
.-+|-.|++.=++..+.+++++++|++|.+. .|.-+|.||.+.+.+ .| ..+..+.++
T Consensus 139 ~PcTp~ail~ll~~y~i~l~Gk~vvViGrS~iVG~Pla~lL~~~~~~-~~-------atVt~~hs~-------------- 196 (295)
T PRK14174 139 VSCTPYGILELLGRYNIETKGKHCVVVGRSNIVGKPMANLMLQKLKE-SN-------CTVTICHSA-------------- 196 (295)
T ss_pred CCCCHHHHHHHHHHhCCCCCCCEEEEECCCCcchHHHHHHHHhcccc-CC-------CEEEEEeCC--------------
Confidence 3466778888999999999999999999764 688888877643211 12 234444432
Q ss_pred chhhhcccCCCCCHHHHHhccCCcEEEeecCCCCCCCHHHHH
Q 007802 388 KKPWAHEHAPIKSLLDAVKAIKPTMLMGTSGVGKTFTKEVVE 429 (589)
Q Consensus 388 k~~fa~~~~~~~~L~e~V~~vkPtvLIG~S~~~g~Fteevv~ 429 (589)
..+|.+.+++ +|++|+..+.++.|++++|+
T Consensus 197 ----------t~~l~~~~~~--ADIvI~Avg~~~li~~~~vk 226 (295)
T PRK14174 197 ----------TKDIPSYTRQ--ADILIAAIGKARFITADMVK 226 (295)
T ss_pred ----------chhHHHHHHh--CCEEEEecCccCccCHHHcC
Confidence 1358889987 99999999999999999994
No 138
>PRK07679 pyrroline-5-carboxylate reductase; Reviewed
Probab=84.79 E-value=23 Score=36.38 Aligned_cols=99 Identities=14% Similarity=0.190 Sum_probs=54.7
Q ss_pred CceEEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEcccCcccCCcccCCchhchhhhcccCCCCCHHHHHhcc
Q 007802 329 DQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLIVSSRKESLQHFKKPWAHEHAPIKSLLDAVKAI 408 (589)
Q Consensus 329 d~riv~~GAGsAg~GiA~ll~~~~~~~~G~s~eeA~~~i~~vD~~GLv~~~r~~~l~~~k~~fa~~~~~~~~L~e~V~~v 408 (589)
..||.|+|+|..|..||+.+... |.- ...+|+++|+. .. +.+...+..|- .....+..|+++.
T Consensus 3 ~mkI~~IG~G~mG~aia~~l~~~-----g~~---~~~~v~v~~r~----~~--~~~~~l~~~~g--~~~~~~~~e~~~~- 65 (279)
T PRK07679 3 IQNISFLGAGSIAEAIIGGLLHA-----NVV---KGEQITVSNRS----NE--TRLQELHQKYG--VKGTHNKKELLTD- 65 (279)
T ss_pred CCEEEEECccHHHHHHHHHHHHC-----CCC---CcceEEEECCC----CH--HHHHHHHHhcC--ceEeCCHHHHHhc-
Confidence 45899999999999999988653 410 11456766652 00 11222222211 1112466677764
Q ss_pred CCcEEEeecCCCCCCCHHHHHHHHcC-CCCcEEEecCCCC
Q 007802 409 KPTMLMGTSGVGKTFTKEVVEAMASF-NEKPVIFALSNPT 447 (589)
Q Consensus 409 kPtvLIG~S~~~g~Fteevv~~Ma~~-~erPIIFaLSNPt 447 (589)
.|++| ++..+ -..+++++.+... .+..+|..+++-+
T Consensus 66 -aDvVi-lav~p-~~~~~vl~~l~~~~~~~~liIs~~aGi 102 (279)
T PRK07679 66 -ANILF-LAMKP-KDVAEALIPFKEYIHNNQLIISLLAGV 102 (279)
T ss_pred -CCEEE-EEeCH-HHHHHHHHHHHhhcCCCCEEEEECCCC
Confidence 66655 44433 2455666666543 3456777776654
No 139
>PRK11880 pyrroline-5-carboxylate reductase; Reviewed
Probab=84.46 E-value=3.9 Score=41.36 Aligned_cols=120 Identities=11% Similarity=0.141 Sum_probs=70.3
Q ss_pred ceEEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEcccCcccCCcccCCchhchhhhcccCCCCCHHHHHhccC
Q 007802 330 QTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLIVSSRKESLQHFKKPWAHEHAPIKSLLDAVKAIK 409 (589)
Q Consensus 330 ~riv~~GAGsAg~GiA~ll~~~~~~~~G~s~eeA~~~i~~vD~~GLv~~~r~~~l~~~k~~fa~~~~~~~~L~e~V~~vk 409 (589)
.||.|+|+|..|..+|..+... |. ...+++++|++. +.....+..| ...-..+..++++.
T Consensus 3 m~I~iIG~G~mG~~la~~l~~~-----g~----~~~~v~v~~r~~-------~~~~~~~~~~--g~~~~~~~~~~~~~-- 62 (267)
T PRK11880 3 KKIGFIGGGNMASAIIGGLLAS-----GV----PAKDIIVSDPSP-------EKRAALAEEY--GVRAATDNQEAAQE-- 62 (267)
T ss_pred CEEEEEechHHHHHHHHHHHhC-----CC----CcceEEEEcCCH-------HHHHHHHHhc--CCeecCChHHHHhc--
Confidence 4799999999999999987653 43 124678887641 1122222211 01112467777764
Q ss_pred CcEEEeecCCCCCCCHHHHHHHHcCCCCcEEEecCCCCCCCCCCHHHHhccccCcEEEeeCCCCCcce
Q 007802 410 PTMLMGTSGVGKTFTKEVVEAMASFNEKPVIFALSNPTSQSECTAEEAYTWSKGQAIFASGSPFDPVE 477 (589)
Q Consensus 410 PtvLIG~S~~~g~Fteevv~~Ma~~~erPIIFaLSNPt~~~E~t~eda~~wT~GraifAsGSPf~pv~ 477 (589)
+|++| ++..+ ...+++++.+..+. ..+|..++|-++ .++.-+|....+=++..-|..|..
T Consensus 63 advVi-l~v~~-~~~~~v~~~l~~~~-~~~vvs~~~gi~-----~~~l~~~~~~~~~iv~~~P~~p~~ 122 (267)
T PRK11880 63 ADVVV-LAVKP-QVMEEVLSELKGQL-DKLVVSIAAGVT-----LARLERLLGADLPVVRAMPNTPAL 122 (267)
T ss_pred CCEEE-EEcCH-HHHHHHHHHHHhhc-CCEEEEecCCCC-----HHHHHHhcCCCCcEEEecCCchHH
Confidence 77776 44433 46788888887655 458899999773 334444543222233345655543
No 140
>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated
Probab=84.43 E-value=2.8 Score=43.29 Aligned_cols=98 Identities=14% Similarity=0.189 Sum_probs=57.5
Q ss_pred eEEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEcccCcccCCcccCCchhc--hhhhc------ccCCCCCHH
Q 007802 331 TFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLIVSSRKESLQHFK--KPWAH------EHAPIKSLL 402 (589)
Q Consensus 331 riv~~GAGsAg~GiA~ll~~~~~~~~G~s~eeA~~~i~~vD~~GLv~~~r~~~l~~~k--~~fa~------~~~~~~~L~ 402 (589)
||.|+|+|..|..+|..|... | .+++++|+..-..+ .+.... ..+.. ......++.
T Consensus 3 kI~iiG~G~mG~~~a~~L~~~-----g-------~~V~~~~r~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 66 (325)
T PRK00094 3 KIAVLGAGSWGTALAIVLARN-----G-------HDVTLWARDPEQAA----EINADRENPRYLPGIKLPDNLRATTDLA 66 (325)
T ss_pred EEEEECCCHHHHHHHHHHHhC-----C-------CEEEEEECCHHHHH----HHHHcCcccccCCCCcCCCCeEEeCCHH
Confidence 799999999999999988653 4 35778887521110 011000 00000 001124677
Q ss_pred HHHhccCCcEEEeecCCCCCCCHHHHHHHHcC-CCCcEEEecCCCCC
Q 007802 403 DAVKAIKPTMLMGTSGVGKTFTKEVVEAMASF-NEKPVIFALSNPTS 448 (589)
Q Consensus 403 e~V~~vkPtvLIG~S~~~g~Fteevv~~Ma~~-~erPIIFaLSNPt~ 448 (589)
++++. +|++| ++... ...+++++.+..+ .+..+|..++|-..
T Consensus 67 ~~~~~--~D~vi-~~v~~-~~~~~v~~~l~~~~~~~~~vi~~~ngv~ 109 (325)
T PRK00094 67 EALAD--ADLIL-VAVPS-QALREVLKQLKPLLPPDAPIVWATKGIE 109 (325)
T ss_pred HHHhC--CCEEE-EeCCH-HHHHHHHHHHHhhcCCCCEEEEEeeccc
Confidence 77765 77766 33323 3678888887765 34568888887443
No 141
>PRK13243 glyoxylate reductase; Reviewed
Probab=84.18 E-value=13 Score=39.64 Aligned_cols=141 Identities=14% Similarity=0.113 Sum_probs=82.9
Q ss_pred CCCCCCceEEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEcccCcccCCcccCCchhchhhhcccCCCCCHHH
Q 007802 324 GGTLADQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLIVSSRKESLQHFKKPWAHEHAPIKSLLD 403 (589)
Q Consensus 324 g~~l~d~riv~~GAGsAg~GiA~ll~~~~~~~~G~s~eeA~~~i~~vD~~GLv~~~r~~~l~~~k~~fa~~~~~~~~L~e 403 (589)
|..|.+++|.|+|.|..|..+|+.+... |+ +++.+|+.. . . .. ...+ .....+|.|
T Consensus 145 g~~L~gktvgIiG~G~IG~~vA~~l~~~-----G~-------~V~~~d~~~----~--~-~~--~~~~---~~~~~~l~e 200 (333)
T PRK13243 145 GYDVYGKTIGIIGFGRIGQAVARRAKGF-----GM-------RILYYSRTR----K--P-EA--EKEL---GAEYRPLEE 200 (333)
T ss_pred ccCCCCCEEEEECcCHHHHHHHHHHHHC-----CC-------EEEEECCCC----C--h-hh--HHHc---CCEecCHHH
Confidence 4568999999999999999999988643 64 477888741 1 1 11 1111 112347999
Q ss_pred HHhccCCcEEEeecC----CCCCCCHHHHHHHHcCCCCcEEEecCCCCCCCCCCHHHHhccccCcEEEeeCCCC--Ccce
Q 007802 404 AVKAIKPTMLMGTSG----VGKTFTKEVVEAMASFNEKPVIFALSNPTSQSECTAEEAYTWSKGQAIFASGSPF--DPVE 477 (589)
Q Consensus 404 ~V~~vkPtvLIG~S~----~~g~Fteevv~~Ma~~~erPIIFaLSNPt~~~E~t~eda~~wT~GraifAsGSPf--~pv~ 477 (589)
+++. .|+++=.-- .-+.|+++.+..|. +..++.=.|.=.---|-.-.+|+ ..|+.-.|.=-=| +|..
T Consensus 201 ll~~--aDiV~l~lP~t~~T~~~i~~~~~~~mk---~ga~lIN~aRg~~vd~~aL~~aL--~~g~i~gAaLDV~~~EP~~ 273 (333)
T PRK13243 201 LLRE--SDFVSLHVPLTKETYHMINEERLKLMK---PTAILVNTARGKVVDTKALVKAL--KEGWIAGAGLDVFEEEPYY 273 (333)
T ss_pred HHhh--CCEEEEeCCCChHHhhccCHHHHhcCC---CCeEEEECcCchhcCHHHHHHHH--HcCCeEEEEeccCCCCCCC
Confidence 9986 898874421 13689999999995 56677766653322222222333 3566544321111 1111
Q ss_pred eCCeeeCCCCccccccchhhhH
Q 007802 478 YNGKVFVPGQGNNAYIFPGLGL 499 (589)
Q Consensus 478 ~~G~~~~p~Q~NN~~iFPGigl 499 (589)
+.. -=+..|..+-|=+|-
T Consensus 274 --~~p--L~~~~nvilTPHia~ 291 (333)
T PRK13243 274 --NEE--LFSLKNVVLAPHIGS 291 (333)
T ss_pred --Cch--hhcCCCEEECCcCCc
Confidence 111 123468888888874
No 142
>PRK14171 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=84.13 E-value=4.8 Score=42.71 Aligned_cols=86 Identities=17% Similarity=0.278 Sum_probs=68.1
Q ss_pred CchHHHHHHHHHHHHHHhCCCCCCceEEEeCcC-hHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEcccCcccCCcccCC
Q 007802 306 QGTASVVLAGILSALKLVGGTLADQTFLFLGAG-EAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLIVSSRKESL 384 (589)
Q Consensus 306 QGTaaV~lAgll~Alr~~g~~l~d~riv~~GAG-sAg~GiA~ll~~~~~~~~G~s~eeA~~~i~~vD~~GLv~~~r~~~l 384 (589)
.+-.-+|-+|++.=++..+.+++++++|++|-+ ..|.-+|.||.. .|. .+.+|+|+
T Consensus 136 ~~~~PcTp~av~~lL~~y~i~l~GK~vvViGrS~iVGkPla~lL~~-----~~A-------TVtichs~----------- 192 (288)
T PRK14171 136 QGFIPCTALGCLAVIKKYEPNLTGKNVVIIGRSNIVGKPLSALLLK-----ENC-------SVTICHSK----------- 192 (288)
T ss_pred CCCcCCCHHHHHHHHHHhCCCCCCCEEEEECCCCcchHHHHHHHHH-----CCC-------EEEEeCCC-----------
Confidence 345677888899999999999999999999975 468888887754 242 35556543
Q ss_pred chhchhhhcccCCCCCHHHHHhccCCcEEEeecCCCCCCCHHHHH
Q 007802 385 QHFKKPWAHEHAPIKSLLDAVKAIKPTMLMGTSGVGKTFTKEVVE 429 (589)
Q Consensus 385 ~~~k~~fa~~~~~~~~L~e~V~~vkPtvLIG~S~~~g~Fteevv~ 429 (589)
.++|.+.+++ +|++|-..+.++.+++++|+
T Consensus 193 -------------T~~L~~~~~~--ADIvV~AvGkp~~i~~~~vk 222 (288)
T PRK14171 193 -------------THNLSSITSK--ADIVVAAIGSPLKLTAEYFN 222 (288)
T ss_pred -------------CCCHHHHHhh--CCEEEEccCCCCccCHHHcC
Confidence 1358888886 99999999999999999997
No 143
>PRK15116 sulfur acceptor protein CsdL; Provisional
Probab=83.71 E-value=3.5 Score=43.13 Aligned_cols=108 Identities=19% Similarity=0.219 Sum_probs=66.5
Q ss_pred CCCCCceEEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEcccCcccCCcccCCchhchhhhccc---CCCCCH
Q 007802 325 GTLADQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLIVSSRKESLQHFKKPWAHEH---APIKSL 401 (589)
Q Consensus 325 ~~l~d~riv~~GAGsAg~GiA~ll~~~~~~~~G~s~eeA~~~i~~vD~~GLv~~~r~~~l~~~k~~fa~~~---~~~~~L 401 (589)
.+|++.+|+++|+|..|.-+|+.|+.+ |+ ++|.++|.+=.-.. +++. |..+..+. ....-+
T Consensus 26 ~kL~~s~VlVvG~GGVGs~vae~Lar~-----GV------g~itLiD~D~V~~s----NlnR-Q~~~~~~~vG~~Kve~~ 89 (268)
T PRK15116 26 QLFADAHICVVGIGGVGSWAAEALART-----GI------GAITLIDMDDVCVT----NTNR-QIHALRDNVGLAKAEVM 89 (268)
T ss_pred HHhcCCCEEEECcCHHHHHHHHHHHHc-----CC------CEEEEEeCCEeccc----cccc-ccccChhhcChHHHHHH
Confidence 468899999999999999999998774 76 78999998844332 2442 21121111 011246
Q ss_pred HHHHhccCCcEEEeecCCCCCCCHHHHHHHHcCCCCcEEEecCCCCCCC
Q 007802 402 LDAVKAIKPTMLMGTSGVGKTFTKEVVEAMASFNEKPVIFALSNPTSQS 450 (589)
Q Consensus 402 ~e~V~~vkPtvLIG~S~~~g~Fteevv~~Ma~~~erPIIFaLSNPt~~~ 450 (589)
.+-+..+.|++-|-.- ...++++-+...-...-.=||-+.-|+..+.
T Consensus 90 ~~rl~~INP~~~V~~i--~~~i~~e~~~~ll~~~~D~VIdaiD~~~~k~ 136 (268)
T PRK15116 90 AERIRQINPECRVTVV--DDFITPDNVAEYMSAGFSYVIDAIDSVRPKA 136 (268)
T ss_pred HHHHHhHCCCcEEEEE--ecccChhhHHHHhcCCCCEEEEcCCCHHHHH
Confidence 6777777888766433 2345655544443222234666777766443
No 144
>TIGR01772 MDH_euk_gproteo malate dehydrogenase, NAD-dependent. Although malate dehydrogenases have in some cases been mistaken for lactate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of lactate dehydrogenases.
Probab=83.60 E-value=7.7 Score=41.35 Aligned_cols=115 Identities=24% Similarity=0.317 Sum_probs=71.6
Q ss_pred eEEEeCc-ChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEcccCcccCCcccCCchhchhhhccc--CCCCCHHHHHhc
Q 007802 331 TFLFLGA-GEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLIVSSRKESLQHFKKPWAHEH--APIKSLLDAVKA 407 (589)
Q Consensus 331 riv~~GA-GsAg~GiA~ll~~~~~~~~G~s~eeA~~~i~~vD~~GLv~~~r~~~l~~~k~~fa~~~--~~~~~L~e~V~~ 407 (589)
||.|+|| |..|..+|-+|+. .|+ -..+.|+|.+. ..+-.-+|.+.. ...+-. ....++.++++.
T Consensus 1 KV~IiGaaG~VG~~~a~~l~~-----~~~-----~~elvL~Di~~--a~g~a~DL~~~~-~~~~i~~~~~~~~~~~~~~d 67 (312)
T TIGR01772 1 KVAVLGAAGGIGQPLSLLLKL-----QPY-----VSELSLYDIAG--AAGVAADLSHIP-TAASVKGFSGEEGLENALKG 67 (312)
T ss_pred CEEEECCCCHHHHHHHHHHHh-----CCC-----CcEEEEecCCC--CcEEEchhhcCC-cCceEEEecCCCchHHHcCC
Confidence 6899999 9999999988754 254 26799999876 222211244322 101101 111246778876
Q ss_pred cCCcEEEeecCCCCC--------------CCHHHHHHHHcCCCCcEEEecCCCCC-CCCCCHHHHhcc
Q 007802 408 IKPTMLMGTSGVGKT--------------FTKEVVEAMASFNEKPVIFALSNPTS-QSECTAEEAYTW 460 (589)
Q Consensus 408 vkPtvLIG~S~~~g~--------------Fteevv~~Ma~~~erPIIFaLSNPt~-~~E~t~eda~~w 460 (589)
.|++|=+.+.+.. .=+++.+.+.+++..-||+-.|||.. ++.+...-++++
T Consensus 68 --aDivvitaG~~~~~g~~R~dll~~N~~I~~~i~~~i~~~~p~~iiivvsNPvDv~~~i~t~~~~~~ 133 (312)
T TIGR01772 68 --ADVVVIPAGVPRKPGMTRDDLFNVNAGIVKDLVAAVAESCPKAMILVITNPVNSTVPIAAEVLKKK 133 (312)
T ss_pred --CCEEEEeCCCCCCCCccHHHHHHHhHHHHHHHHHHHHHhCCCeEEEEecCchhhHHHHHHHHHHHh
Confidence 8988755555421 12467778889999999999999983 222344445543
No 145
>cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol
Probab=83.57 E-value=1 Score=44.51 Aligned_cols=74 Identities=19% Similarity=0.316 Sum_probs=49.5
Q ss_pred CCCCCceEEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEcccCcccCCcccCCchhchhhhcc-cCC-----C
Q 007802 325 GTLADQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLIVSSRKESLQHFKKPWAHE-HAP-----I 398 (589)
Q Consensus 325 ~~l~d~riv~~GAGsAg~GiA~ll~~~~~~~~G~s~eeA~~~i~~vD~~GLv~~~r~~~l~~~k~~fa~~-~~~-----~ 398 (589)
++|++.||+++|+|.-|.-+|+.|+.+ |+ ++|.++|.+= +..+ +|+.+ .|.+. ... .
T Consensus 15 ~~L~~s~VlviG~gglGsevak~L~~~-----GV------g~i~lvD~d~-ve~s---nl~rq--~~~~~~~~~iG~~Ka 77 (198)
T cd01485 15 NKLRSAKVLIIGAGALGAEIAKNLVLA-----GI------DSITIVDHRL-VSTE---DLGSN--FFLDAEVSNSGMNRA 77 (198)
T ss_pred HHHhhCcEEEECCCHHHHHHHHHHHHc-----CC------CEEEEEECCc-CChh---cCccc--EecccchhhcCchHH
Confidence 468899999999999999999999774 87 7899999983 2221 24322 12221 011 1
Q ss_pred CCHHHHHhccCCcEEEe
Q 007802 399 KSLLDAVKAIKPTMLMG 415 (589)
Q Consensus 399 ~~L~e~V~~vkPtvLIG 415 (589)
..+.+.++...|++=|=
T Consensus 78 ~~~~~~L~~lNp~v~i~ 94 (198)
T cd01485 78 AASYEFLQELNPNVKLS 94 (198)
T ss_pred HHHHHHHHHHCCCCEEE
Confidence 24666777777877553
No 146
>PLN02516 methylenetetrahydrofolate dehydrogenase (NADP+)
Probab=83.37 E-value=5.3 Score=42.59 Aligned_cols=85 Identities=13% Similarity=0.203 Sum_probs=67.0
Q ss_pred chHHHHHHHHHHHHHHhCCCCCCceEEEeCcCh-HHHHHHHHHHHHHHhccCCCHHhhcCeEEEEcccCcccCCcccCCc
Q 007802 307 GTASVVLAGILSALKLVGGTLADQTFLFLGAGE-AGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLIVSSRKESLQ 385 (589)
Q Consensus 307 GTaaV~lAgll~Alr~~g~~l~d~riv~~GAGs-Ag~GiA~ll~~~~~~~~G~s~eeA~~~i~~vD~~GLv~~~r~~~l~ 385 (589)
+-.-+|-+|++.=++-.|.+|+++++|++|-+. .|.-+|.||.. .| ..+.+|+++
T Consensus 145 ~~~PcTp~avi~lL~~~~i~l~Gk~vvVIGRS~iVGkPla~lL~~-----~~-------ATVtvchs~------------ 200 (299)
T PLN02516 145 LFLPCTPKGCLELLSRSGIPIKGKKAVVVGRSNIVGLPVSLLLLK-----AD-------ATVTVVHSR------------ 200 (299)
T ss_pred CCCCCCHHHHHHHHHHhCCCCCCCEEEEECCCccchHHHHHHHHH-----CC-------CEEEEeCCC------------
Confidence 345677788899999999999999999999764 67777777743 24 346777553
Q ss_pred hhchhhhcccCCCCCHHHHHhccCCcEEEeecCCCCCCCHHHHH
Q 007802 386 HFKKPWAHEHAPIKSLLDAVKAIKPTMLMGTSGVGKTFTKEVVE 429 (589)
Q Consensus 386 ~~k~~fa~~~~~~~~L~e~V~~vkPtvLIG~S~~~g~Fteevv~ 429 (589)
.++|.+.+++ +|++|-..+.++.|+.|+|+
T Consensus 201 ------------T~nl~~~~~~--ADIvv~AvGk~~~i~~~~vk 230 (299)
T PLN02516 201 ------------TPDPESIVRE--ADIVIAAAGQAMMIKGDWIK 230 (299)
T ss_pred ------------CCCHHHHHhh--CCEEEEcCCCcCccCHHHcC
Confidence 1357888886 99999999999999999997
No 147
>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent. The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.
Probab=83.03 E-value=3.2 Score=43.77 Aligned_cols=124 Identities=19% Similarity=0.260 Sum_probs=71.8
Q ss_pred ceEEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEcccCcccCCcccCCchhchhhhcccC---CCCCHHHHHh
Q 007802 330 QTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLIVSSRKESLQHFKKPWAHEHA---PIKSLLDAVK 406 (589)
Q Consensus 330 ~riv~~GAGsAg~GiA~ll~~~~~~~~G~s~eeA~~~i~~vD~~GLv~~~r~~~l~~~k~~fa~~~~---~~~~L~e~V~ 406 (589)
.||.|+|+|..|.++|-.++. .|+ + ++.++|..--+.+++.-++.+ ...+..... ...++.+ ++
T Consensus 2 ~KV~VIGaG~vG~~iA~~la~-----~g~----~--~VvlvDi~~~l~~g~a~d~~~-~~~~~~~~~~i~~t~d~~~-~~ 68 (305)
T TIGR01763 2 KKISVIGAGFVGATTAFRLAE-----KEL----A--DLVLLDVVEGIPQGKALDMYE-ASPVGGFDTKVTGTNNYAD-TA 68 (305)
T ss_pred CEEEEECcCHHHHHHHHHHHH-----cCC----C--eEEEEeCCCChhHHHHHhhhh-hhhccCCCcEEEecCCHHH-hC
Confidence 389999999999999998754 254 2 499999832222211000110 000100001 1246766 55
Q ss_pred ccCCcEEEeecCCC---C-C------CC----HHHHHHHHcCCCCcEEEecCCCCCCCCCCHHHHhcccc--CcEEEeeC
Q 007802 407 AIKPTMLMGTSGVG---K-T------FT----KEVVEAMASFNEKPVIFALSNPTSQSECTAEEAYTWSK--GQAIFASG 470 (589)
Q Consensus 407 ~vkPtvLIG~S~~~---g-~------Ft----eevv~~Ma~~~erPIIFaLSNPt~~~E~t~eda~~wT~--GraifAsG 470 (589)
+ .|++|=+.+.+ | . ++ +++++.|.+++...+|+-.|||. .+...-++++++ -+=+|++|
T Consensus 69 ~--aDiVIitag~p~~~~~sR~~l~~~N~~iv~~i~~~I~~~~p~~~iIv~tNP~---di~t~~~~~~sg~~~~rviG~g 143 (305)
T TIGR01763 69 N--SDIVVITAGLPRKPGMSREDLLSMNAGIVREVTGRIMEHSPNPIIVVVSNPL---DAMTYVAWQKSGFPKERVIGQA 143 (305)
T ss_pred C--CCEEEEcCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcH---HHHHHHHHHHHCcCHHHEEEec
Confidence 4 78877554433 1 1 22 45667788899999999999998 344555555531 12266666
Q ss_pred C
Q 007802 471 S 471 (589)
Q Consensus 471 S 471 (589)
.
T Consensus 144 ~ 144 (305)
T TIGR01763 144 G 144 (305)
T ss_pred c
Confidence 3
No 148
>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1.4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....
Probab=82.97 E-value=0.47 Score=45.35 Aligned_cols=90 Identities=19% Similarity=0.349 Sum_probs=49.2
Q ss_pred CCCceEEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEccc-Cccc-----------CCcccCCchhchhhhcc
Q 007802 327 LADQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSK-GLIV-----------SSRKESLQHFKKPWAHE 394 (589)
Q Consensus 327 l~d~riv~~GAGsAg~GiA~ll~~~~~~~~G~s~eeA~~~i~~vD~~-GLv~-----------~~r~~~l~~~k~~fa~~ 394 (589)
+.-.+|||.|+|.+|.|.++++... |. ++...|.. ..+. ....+.+.. +.|++.
T Consensus 18 ~~p~~vvv~G~G~vg~gA~~~~~~l-----Ga-------~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~--~~~~~~ 83 (168)
T PF01262_consen 18 VPPAKVVVTGAGRVGQGAAEIAKGL-----GA-------EVVVPDERPERLRQLESLGAYFIEVDYEDHLER--KDFDKA 83 (168)
T ss_dssp E-T-EEEEESTSHHHHHHHHHHHHT-----T--------EEEEEESSHHHHHHHHHTTTEESEETTTTTTTS--B-CCHH
T ss_pred CCCeEEEEECCCHHHHHHHHHHhHC-----CC-------EEEeccCCHHHHHhhhcccCceEEEcccccccc--cccchh
Confidence 5568999999999999999988653 53 34444542 0000 000000000 002221
Q ss_pred ----cCC--CCCHHHHHhccCCcEEEeec-----CCCCCCCHHHHHHHH
Q 007802 395 ----HAP--IKSLLDAVKAIKPTMLMGTS-----GVGKTFTKEVVEAMA 432 (589)
Q Consensus 395 ----~~~--~~~L~e~V~~vkPtvLIG~S-----~~~g~Fteevv~~Ma 432 (589)
.+. ...|.+.++. .|++|+.. ..|-+||++.++.|.
T Consensus 84 ~~~~~~~~~~~~f~~~i~~--~d~vI~~~~~~~~~~P~lvt~~~~~~m~ 130 (168)
T PF01262_consen 84 DYYEHPESYESNFAEFIAP--ADIVIGNGLYWGKRAPRLVTEEMVKSMK 130 (168)
T ss_dssp HCHHHCCHHHHHHHHHHHH---SEEEEHHHBTTSS---SBEHHHHHTSS
T ss_pred hhhHHHHHhHHHHHHHHhh--CcEEeeecccCCCCCCEEEEhHHhhccC
Confidence 011 1368888876 79999743 445689999999996
No 149
>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=82.78 E-value=2.3 Score=44.65 Aligned_cols=32 Identities=31% Similarity=0.346 Sum_probs=25.5
Q ss_pred ceEEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEccc
Q 007802 330 QTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSK 373 (589)
Q Consensus 330 ~riv~~GAGsAg~GiA~ll~~~~~~~~G~s~eeA~~~i~~vD~~ 373 (589)
-||.|+|+|+.|.++|..+... | .++.++|+.
T Consensus 5 m~I~iIG~G~mG~~ia~~L~~~-----G-------~~V~~~~r~ 36 (328)
T PRK14618 5 MRVAVLGAGAWGTALAVLAASK-----G-------VPVRLWARR 36 (328)
T ss_pred CeEEEECcCHHHHHHHHHHHHC-----C-------CeEEEEeCC
Confidence 3799999999999999988763 5 347777773
No 150
>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional
Probab=82.73 E-value=1.6 Score=44.54 Aligned_cols=38 Identities=24% Similarity=0.334 Sum_probs=34.1
Q ss_pred CCCCCceEEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEccc
Q 007802 325 GTLADQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSK 373 (589)
Q Consensus 325 ~~l~d~riv~~GAGsAg~GiA~ll~~~~~~~~G~s~eeA~~~i~~vD~~ 373 (589)
.+|++.||+++|+|.-|.-+|+.|+.+ |+ ++|.++|.+
T Consensus 28 ~~L~~~~VliiG~GglGs~va~~La~~-----Gv------g~i~lvD~D 65 (245)
T PRK05690 28 EKLKAARVLVVGLGGLGCAASQYLAAA-----GV------GTLTLVDFD 65 (245)
T ss_pred HHhcCCeEEEECCCHHHHHHHHHHHHc-----CC------CEEEEEcCC
Confidence 478999999999999999999999774 76 789999998
No 151
>PRK14166 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=82.70 E-value=6.1 Score=41.83 Aligned_cols=86 Identities=16% Similarity=0.246 Sum_probs=67.9
Q ss_pred CchHHHHHHHHHHHHHHhCCCCCCceEEEeCcC-hHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEcccCcccCCcccCC
Q 007802 306 QGTASVVLAGILSALKLVGGTLADQTFLFLGAG-EAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLIVSSRKESL 384 (589)
Q Consensus 306 QGTaaV~lAgll~Alr~~g~~l~d~riv~~GAG-sAg~GiA~ll~~~~~~~~G~s~eeA~~~i~~vD~~GLv~~~r~~~l 384 (589)
.+-.-+|-+|++.=++-.+.++++++++++|-+ ..|.-+|.||.. .| ..+.+|+++ .
T Consensus 134 ~~~~PcTp~avi~lL~~y~i~l~Gk~vvVvGrS~iVGkPla~lL~~-----~~-------atVt~chs~-------T--- 191 (282)
T PRK14166 134 SGFLPCTPLGVMKLLKAYEIDLEGKDAVIIGASNIVGRPMATMLLN-----AG-------ATVSVCHIK-------T--- 191 (282)
T ss_pred CCCcCCCHHHHHHHHHHhCCCCCCCEEEEECCCCcchHHHHHHHHH-----CC-------CEEEEeCCC-------C---
Confidence 345677888999999999999999999999976 467788877753 24 235555553 1
Q ss_pred chhchhhhcccCCCCCHHHHHhccCCcEEEeecCCCCCCCHHHHH
Q 007802 385 QHFKKPWAHEHAPIKSLLDAVKAIKPTMLMGTSGVGKTFTKEVVE 429 (589)
Q Consensus 385 ~~~k~~fa~~~~~~~~L~e~V~~vkPtvLIG~S~~~g~Fteevv~ 429 (589)
++|.+.+++ +|++|-..+.++.|++++|+
T Consensus 192 --------------~nl~~~~~~--ADIvIsAvGkp~~i~~~~vk 220 (282)
T PRK14166 192 --------------KDLSLYTRQ--ADLIIVAAGCVNLLRSDMVK 220 (282)
T ss_pred --------------CCHHHHHhh--CCEEEEcCCCcCccCHHHcC
Confidence 358888886 99999999999999999997
No 152
>PRK14187 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=82.41 E-value=5.7 Score=42.29 Aligned_cols=85 Identities=16% Similarity=0.215 Sum_probs=66.8
Q ss_pred chHHHHHHHHHHHHHHhCCCCCCceEEEeCcCh-HHHHHHHHHHHHHHhccCCCHHhhcCeEEEEcccCcccCCcccCCc
Q 007802 307 GTASVVLAGILSALKLVGGTLADQTFLFLGAGE-AGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLIVSSRKESLQ 385 (589)
Q Consensus 307 GTaaV~lAgll~Alr~~g~~l~d~riv~~GAGs-Ag~GiA~ll~~~~~~~~G~s~eeA~~~i~~vD~~GLv~~~r~~~l~ 385 (589)
+-.-+|-.|++.-++..+.+++++++|++|.+. .|.-+|.||.. .| ..+.+|+++
T Consensus 138 ~~~PcTp~avi~lL~~~~i~l~Gk~vvViGrS~iVGkPla~lL~~-----~~-------aTVt~chs~------------ 193 (294)
T PRK14187 138 CLIPCTPKGCLYLIKTITRNLSGSDAVVIGRSNIVGKPMACLLLG-----EN-------CTVTTVHSA------------ 193 (294)
T ss_pred CccCcCHHHHHHHHHHhCCCCCCCEEEEECCCccchHHHHHHHhh-----CC-------CEEEEeCCC------------
Confidence 345678888899999999999999999999764 67777777753 24 246666653
Q ss_pred hhchhhhcccCCCCCHHHHHhccCCcEEEeecCCCCCCCHHHHH
Q 007802 386 HFKKPWAHEHAPIKSLLDAVKAIKPTMLMGTSGVGKTFTKEVVE 429 (589)
Q Consensus 386 ~~k~~fa~~~~~~~~L~e~V~~vkPtvLIG~S~~~g~Fteevv~ 429 (589)
.++|.+.+++ +|++|-..+.++.++.++|+
T Consensus 194 ------------T~~l~~~~~~--ADIvVsAvGkp~~i~~~~ik 223 (294)
T PRK14187 194 ------------TRDLADYCSK--ADILVAAVGIPNFVKYSWIK 223 (294)
T ss_pred ------------CCCHHHHHhh--CCEEEEccCCcCccCHHHcC
Confidence 0357788886 99999999999999999997
No 153
>cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins. Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas
Probab=82.41 E-value=3 Score=43.44 Aligned_cols=121 Identities=19% Similarity=0.370 Sum_probs=69.5
Q ss_pred EEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEcccCcccCCcccCCchhchhhhccc---CCCCCHHHHHhcc
Q 007802 332 FLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLIVSSRKESLQHFKKPWAHEH---APIKSLLDAVKAI 408 (589)
Q Consensus 332 iv~~GAGsAg~GiA~ll~~~~~~~~G~s~eeA~~~i~~vD~~GLv~~~r~~~l~~~k~~fa~~~---~~~~~L~e~V~~v 408 (589)
|.|+|||..|.++|..++. .|+ + .++++|.+==..++..-++.+.. .+.... ....+. ++++.
T Consensus 1 I~IIGaG~vG~~ia~~la~-----~~l----~--eV~L~Di~e~~~~g~~~dl~~~~-~~~~~~~~I~~t~d~-~~l~d- 66 (300)
T cd01339 1 ISIIGAGNVGATLAQLLAL-----KEL----G--DVVLLDIVEGLPQGKALDISQAA-PILGSDTKVTGTNDY-EDIAG- 66 (300)
T ss_pred CEEECCCHHHHHHHHHHHh-----CCC----c--EEEEEeCCCcHHHHHHHHHHHhh-hhcCCCeEEEEcCCH-HHhCC-
Confidence 5789999999999987754 255 1 69999986100010000011110 010000 011355 44665
Q ss_pred CCcEEEeecCCCCC--------------CCHHHHHHHHcCCCCcEEEecCCCCCCCCCCHHHHhccccCc---EEEeeCC
Q 007802 409 KPTMLMGTSGVGKT--------------FTKEVVEAMASFNEKPVIFALSNPTSQSECTAEEAYTWSKGQ---AIFASGS 471 (589)
Q Consensus 409 kPtvLIG~S~~~g~--------------Fteevv~~Ma~~~erPIIFaLSNPt~~~E~t~eda~~wT~Gr---aifAsGS 471 (589)
.|++|=+.+.+.. .-+++++.|.+++...+|+-.|||. ......+++++ |. -+|++|+
T Consensus 67 -ADiVIit~g~p~~~~~~r~e~~~~n~~i~~~i~~~i~~~~p~~~iIv~sNP~---di~t~~~~~~s-~~~~~rviGlgt 141 (300)
T cd01339 67 -SDVVVITAGIPRKPGMSRDDLLGTNAKIVKEVAENIKKYAPNAIVIVVTNPL---DVMTYVAYKAS-GFPRNRVIGMAG 141 (300)
T ss_pred -CCEEEEecCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcH---HHHHHHHHHHh-CCCHHHEEEecc
Confidence 8888844333311 2347889999999999999999998 33334445554 32 3677774
No 154
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=82.41 E-value=4.1 Score=43.60 Aligned_cols=108 Identities=19% Similarity=0.122 Sum_probs=60.1
Q ss_pred HHHhccCCcEEEeecCCCCCCCHHHHHHHHcCCCCcEEEecCCCCC---C-----CCCCHHHHhccccCcEEEeeCCCCC
Q 007802 403 DAVKAIKPTMLMGTSGVGKTFTKEVVEAMASFNEKPVIFALSNPTS---Q-----SECTAEEAYTWSKGQAIFASGSPFD 474 (589)
Q Consensus 403 e~V~~vkPtvLIG~S~~~g~Fteevv~~Ma~~~erPIIFaLSNPt~---~-----~E~t~eda~~wT~GraifAsGSPf~ 474 (589)
++-+..+|+++|..||. +.-..++-..+ ++-+|=|+.=.-||.. + .+-|.++++++... |+..-=..
T Consensus 104 ~l~~~~~~~aIlaSnTS-~l~~s~la~~~-~~p~R~~g~HffnP~~~~pLVEVv~g~~T~~e~~~~~~~---f~~~lGk~ 178 (321)
T PRK07066 104 RISRAAKPDAIIASSTS-GLLPTDFYARA-THPERCVVGHPFNPVYLLPLVEVLGGERTAPEAVDAAMG---IYRALGMR 178 (321)
T ss_pred HHHHhCCCCeEEEECCC-ccCHHHHHHhc-CCcccEEEEecCCccccCceEEEeCCCCCCHHHHHHHHH---HHHHcCCE
Confidence 44466788888888876 33333333322 3445557777788863 2 23355566654321 22222234
Q ss_pred cceeCCeeeCCCCccccccchhhhHHHHHhCCcccCHHHHHHH
Q 007802 475 PVEYNGKVFVPGQGNNAYIFPGLGLGLIISGAIRVRDEMLLAA 517 (589)
Q Consensus 475 pv~~~G~~~~p~Q~NN~~iFPGiglG~~~~~a~~Itd~m~~aA 517 (589)
||..+ ...||-.=|-+.+|.+-=++-+..---.|.+-+-+|
T Consensus 179 pV~v~--kd~pGFi~NRl~~a~~~EA~~lv~eGvas~edID~a 219 (321)
T PRK07066 179 PLHVR--KEVPGFIADRLLEALWREALHLVNEGVATTGEIDDA 219 (321)
T ss_pred eEecC--CCCccHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 55442 256777777777777766666655555555555554
No 155
>PRK14193 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=82.30 E-value=5.4 Score=42.23 Aligned_cols=85 Identities=19% Similarity=0.333 Sum_probs=66.0
Q ss_pred HHHHHHHHHHHHHHhCCCCCCceEEEeCcC-hHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEcccCcccCCcccCCchh
Q 007802 309 ASVVLAGILSALKLVGGTLADQTFLFLGAG-EAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLIVSSRKESLQHF 387 (589)
Q Consensus 309 aaV~lAgll~Alr~~g~~l~d~riv~~GAG-sAg~GiA~ll~~~~~~~~G~s~eeA~~~i~~vD~~GLv~~~r~~~l~~~ 387 (589)
.-+|-.|++.-++-.|.+|+++++|++|.+ ..|.-+|.||..- ..| ..+.+|.++
T Consensus 138 ~PcTp~av~~ll~~~~i~l~Gk~vvViGrS~~VGkPla~lL~~~---~~~-------atVtvchs~-------------- 193 (284)
T PRK14193 138 LPCTPRGIVHLLRRYDVELAGAHVVVIGRGVTVGRPIGLLLTRR---SEN-------ATVTLCHTG-------------- 193 (284)
T ss_pred CCCCHHHHHHHHHHhCCCCCCCEEEEECCCCcchHHHHHHHhhc---cCC-------CEEEEeCCC--------------
Confidence 467888899999999999999999999975 4688888877431 013 235555542
Q ss_pred chhhhcccCCCCCHHHHHhccCCcEEEeecCCCCCCCHHHHH
Q 007802 388 KKPWAHEHAPIKSLLDAVKAIKPTMLMGTSGVGKTFTKEVVE 429 (589)
Q Consensus 388 k~~fa~~~~~~~~L~e~V~~vkPtvLIG~S~~~g~Fteevv~ 429 (589)
.++|.+.+++ +|++|-..+.++.++.++|+
T Consensus 194 ----------T~~l~~~~k~--ADIvV~AvGkp~~i~~~~ik 223 (284)
T PRK14193 194 ----------TRDLAAHTRR--ADIIVAAAGVAHLVTADMVK 223 (284)
T ss_pred ----------CCCHHHHHHh--CCEEEEecCCcCccCHHHcC
Confidence 1368888987 99999999999999999997
No 156
>cd01338 MDH_choloroplast_like Chloroplast-like malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are bacterial MDHs, and plant MDHs localized to the choloroplasts. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=82.17 E-value=7.4 Score=41.55 Aligned_cols=110 Identities=14% Similarity=0.079 Sum_probs=66.3
Q ss_pred ceEEEeCc-ChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEcccCcc--cCCcccCCchhchhhhcccCCCCCHHHHHh
Q 007802 330 QTFLFLGA-GEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLI--VSSRKESLQHFKKPWAHEHAPIKSLLDAVK 406 (589)
Q Consensus 330 ~riv~~GA-GsAg~GiA~ll~~~~~~~~G~s~eeA~~~i~~vD~~GLv--~~~r~~~l~~~k~~fa~~~~~~~~L~e~V~ 406 (589)
.||.|+|| |..|..+|-.|+. .|+-.-.=...+.|+|.+.=. .++..-+|.+...+|.+...-..+..+.++
T Consensus 3 ~KV~IiGa~G~VG~~~a~~l~~-----~~~~~~~~~~el~L~Di~~~~~~a~g~a~Dl~~~~~~~~~~~~i~~~~~~~~~ 77 (322)
T cd01338 3 VRVAVTGAAGQIGYSLLFRIAS-----GEMFGPDQPVILQLLELPQALKALEGVAMELEDCAFPLLAEIVITDDPNVAFK 77 (322)
T ss_pred eEEEEECCCcHHHHHHHHHHHh-----ccccCCCCceEEEEEecCCcccccceeehhhhhccccccCceEEecCcHHHhC
Confidence 38999999 9999998887754 244100001379999985322 111111233333233221011134567777
Q ss_pred ccCCcEEEeecCCC---CCCC------------HHHHHHHHcCC-CCcEEEecCCCC
Q 007802 407 AIKPTMLMGTSGVG---KTFT------------KEVVEAMASFN-EKPVIFALSNPT 447 (589)
Q Consensus 407 ~vkPtvLIG~S~~~---g~Ft------------eevv~~Ma~~~-erPIIFaLSNPt 447 (589)
+ .|++|=+.+.+ | .| +++.+.+.+++ +.-||+-.|||.
T Consensus 78 d--aDivvitaG~~~k~g-~tR~dll~~N~~i~~~i~~~i~~~~~~~~iiivvsNPv 131 (322)
T cd01338 78 D--ADWALLVGAKPRGPG-MERADLLKANGKIFTAQGKALNDVASRDVKVLVVGNPC 131 (322)
T ss_pred C--CCEEEEeCCCCCCCC-CcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEecCcH
Confidence 6 89988665553 3 23 46777888899 499999999998
No 157
>PRK12480 D-lactate dehydrogenase; Provisional
Probab=81.87 E-value=15 Score=39.34 Aligned_cols=108 Identities=15% Similarity=0.158 Sum_probs=69.2
Q ss_pred chHHHHHHHHHHHHHH-------------------hCCCCCCceEEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeE
Q 007802 307 GTASVVLAGILSALKL-------------------VGGTLADQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKI 367 (589)
Q Consensus 307 GTaaV~lAgll~Alr~-------------------~g~~l~d~riv~~GAGsAg~GiA~ll~~~~~~~~G~s~eeA~~~i 367 (589)
.+|=-+++-+|+.+|- .+..|++.+|.|+|.|..|..+|+.+.. .|+ ++
T Consensus 105 ~vAE~~~~l~L~~~R~~~~~~~~~~~~~~~w~~~~~~~~l~g~~VgIIG~G~IG~~vA~~L~~-----~G~-------~V 172 (330)
T PRK12480 105 TIAEYSVSIALQLVRRFPDIERRVQAHDFTWQAEIMSKPVKNMTVAIIGTGRIGAATAKIYAG-----FGA-------TI 172 (330)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHhCCcccccccCccccCCCEEEEECCCHHHHHHHHHHHh-----CCC-------EE
Confidence 3444566666666652 2346889999999999999999998854 264 58
Q ss_pred EEEcccCcccCCcccCCchhchhhhcccCCCCCHHHHHhccCCcEEEeecC-C---CCCCCHHHHHHHHcCCCCcEEEec
Q 007802 368 WLVDSKGLIVSSRKESLQHFKKPWAHEHAPIKSLLDAVKAIKPTMLMGTSG-V---GKTFTKEVVEAMASFNEKPVIFAL 443 (589)
Q Consensus 368 ~~vD~~GLv~~~r~~~l~~~k~~fa~~~~~~~~L~e~V~~vkPtvLIG~S~-~---~g~Fteevv~~Ma~~~erPIIFaL 443 (589)
+.+|+.. + ... .+.+ ...+|.|+++. .|+++=.-- . -+.|.++++..|. +..++.-.
T Consensus 173 ~~~d~~~----~---~~~----~~~~---~~~~l~ell~~--aDiVil~lP~t~~t~~li~~~~l~~mk---~gavlIN~ 233 (330)
T PRK12480 173 TAYDAYP----N---KDL----DFLT---YKDSVKEAIKD--ADIISLHVPANKESYHLFDKAMFDHVK---KGAILVNA 233 (330)
T ss_pred EEEeCCh----h---Hhh----hhhh---ccCCHHHHHhc--CCEEEEeCCCcHHHHHHHhHHHHhcCC---CCcEEEEc
Confidence 8888641 1 010 1211 12479999986 887763321 1 1567788888885 45666655
Q ss_pred CC
Q 007802 444 SN 445 (589)
Q Consensus 444 SN 445 (589)
|.
T Consensus 234 aR 235 (330)
T PRK12480 234 AR 235 (330)
T ss_pred CC
Confidence 54
No 158
>TIGR01381 E1_like_apg7 E1-like protein-activating enzyme Gsa7p/Apg7p. This model represents a family of eukaryotic proteins found in animals, plants, and yeasts, including Apg7p (YHR171W) from Saccharomyces cerevisiae and GSA7 from Pichia pastoris. Members are about 650 to 700 residues in length and include a central domain of about 150 residues shared with the ThiF/MoeB/HesA family of proteins. A low level of similarity to ubiquitin-activating enzyme E1 is described in a paper on peroxisome autophagy mediated by GSA7, and is the basis of the name ubiquitin activating enzyme E1-like protein. Members of the family appear to be involved in protein lipidation events analogous to ubiquitination and required for membrane fusion events during autophagy.
Probab=81.46 E-value=1.4 Score=51.29 Aligned_cols=40 Identities=25% Similarity=0.347 Sum_probs=35.1
Q ss_pred CCCCCceEEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEcccCc
Q 007802 325 GTLADQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGL 375 (589)
Q Consensus 325 ~~l~d~riv~~GAGsAg~GiA~ll~~~~~~~~G~s~eeA~~~i~~vD~~GL 375 (589)
.+|++.||+++|||.-|+-+|+.|+.+ |+ ++|.+||.+-+
T Consensus 334 ekL~~~kVLIvGaGGLGs~VA~~La~~-----GV------g~ItlVD~D~V 373 (664)
T TIGR01381 334 ERYSQLKVLLLGAGTLGCNVARCLIGW-----GV------RHITFVDNGKV 373 (664)
T ss_pred HHHhcCeEEEECCcHHHHHHHHHHHHc-----CC------CeEEEEcCCEE
Confidence 567899999999999999999999875 77 78999998743
No 159
>PLN02545 3-hydroxybutyryl-CoA dehydrogenase
Probab=81.36 E-value=40 Score=34.87 Aligned_cols=32 Identities=41% Similarity=0.745 Sum_probs=26.6
Q ss_pred ceEEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEccc
Q 007802 330 QTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSK 373 (589)
Q Consensus 330 ~riv~~GAGsAg~GiA~ll~~~~~~~~G~s~eeA~~~i~~vD~~ 373 (589)
.||.|+|+|..|.+||..++.+ | .+++++|.+
T Consensus 5 ~~V~vIG~G~mG~~iA~~l~~~-----G-------~~V~~~d~~ 36 (295)
T PLN02545 5 KKVGVVGAGQMGSGIAQLAAAA-----G-------MDVWLLDSD 36 (295)
T ss_pred CEEEEECCCHHHHHHHHHHHhc-----C-------CeEEEEeCC
Confidence 4799999999999999988753 5 468888864
No 160
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=81.25 E-value=3.8 Score=41.92 Aligned_cols=100 Identities=12% Similarity=0.106 Sum_probs=56.4
Q ss_pred eEEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEcccCcccCC-cccCCch--h-chhhhcccCCCCCHHHHHh
Q 007802 331 TFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLIVSS-RKESLQH--F-KKPWAHEHAPIKSLLDAVK 406 (589)
Q Consensus 331 riv~~GAGsAg~GiA~ll~~~~~~~~G~s~eeA~~~i~~vD~~GLv~~~-r~~~l~~--~-k~~fa~~~~~~~~L~e~V~ 406 (589)
||.|+|+|+.|..+|..|... | .+++++++ +--.+. +...+.- . ..... ......++.++++
T Consensus 2 kI~IiG~G~iG~~~a~~L~~~-----g-------~~V~~~~r-~~~~~~~~~~g~~~~~~~~~~~~-~~~~~~~~~~~~~ 67 (305)
T PRK12921 2 RIAVVGAGAVGGTFGGRLLEA-----G-------RDVTFLVR-PKRAKALRERGLVIRSDHGDAVV-PGPVITDPEELTG 67 (305)
T ss_pred eEEEECCCHHHHHHHHHHHHC-----C-------CceEEEec-HHHHHHHHhCCeEEEeCCCeEEe-cceeecCHHHccC
Confidence 799999999999999988653 4 46888877 210000 0000100 0 00000 0011245556554
Q ss_pred ccCCcEEEeecCCCCCCCHHHHHHHHcC-CCCcEEEecCCCCC
Q 007802 407 AIKPTMLMGTSGVGKTFTKEVVEAMASF-NEKPVIFALSNPTS 448 (589)
Q Consensus 407 ~vkPtvLIG~S~~~g~Fteevv~~Ma~~-~erPIIFaLSNPt~ 448 (589)
.+|++|=+.-. ...+++++.++.+ .+..+|+.+.|.-.
T Consensus 68 --~~d~vilavk~--~~~~~~~~~l~~~~~~~~~ii~~~nG~~ 106 (305)
T PRK12921 68 --PFDLVILAVKA--YQLDAAIPDLKPLVGEDTVIIPLQNGIG 106 (305)
T ss_pred --CCCEEEEEecc--cCHHHHHHHHHhhcCCCCEEEEeeCCCC
Confidence 36766533221 3579999988864 34567888999863
No 161
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=80.93 E-value=9.1 Score=39.52 Aligned_cols=32 Identities=34% Similarity=0.518 Sum_probs=26.4
Q ss_pred ceEEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEccc
Q 007802 330 QTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSK 373 (589)
Q Consensus 330 ~riv~~GAGsAg~GiA~ll~~~~~~~~G~s~eeA~~~i~~vD~~ 373 (589)
+||.|+|+|..|.+||..+..+ |. +++++|.+
T Consensus 5 ~kI~vIGaG~mG~~iA~~la~~-----G~-------~V~l~d~~ 36 (292)
T PRK07530 5 KKVGVIGAGQMGNGIAHVCALA-----GY-------DVLLNDVS 36 (292)
T ss_pred CEEEEECCcHHHHHHHHHHHHC-----CC-------eEEEEeCC
Confidence 6899999999999999988653 53 68888874
No 162
>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins. This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.
Probab=80.93 E-value=2.2 Score=39.26 Aligned_cols=93 Identities=15% Similarity=0.182 Sum_probs=53.8
Q ss_pred eEEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEcccCcccCCcccCCchhchhhhc-cc---CCCCCHHHHHh
Q 007802 331 TFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLIVSSRKESLQHFKKPWAH-EH---APIKSLLDAVK 406 (589)
Q Consensus 331 riv~~GAGsAg~GiA~ll~~~~~~~~G~s~eeA~~~i~~vD~~GLv~~~r~~~l~~~k~~fa~-~~---~~~~~L~e~V~ 406 (589)
||+++|+|.-|.-+|+.|+.+ |+ ++|.++|.+-+ .. .+|..+ .|.. +. .....+.+.++
T Consensus 1 ~VliiG~GglGs~ia~~L~~~-----Gv------~~i~ivD~d~v-~~---~nl~r~--~~~~~~~vG~~Ka~~~~~~l~ 63 (143)
T cd01483 1 RVLLVGLGGLGSEIALNLARS-----GV------GKITLIDFDTV-EL---SNLNRQ--FLARQADIGKPKAEVAARRLN 63 (143)
T ss_pred CEEEECCCHHHHHHHHHHHHC-----CC------CEEEEEcCCCc-Cc---chhhcc--ccCChhHCCChHHHHHHHHHH
Confidence 689999999999999999764 76 78999998733 21 124322 1221 11 11135667777
Q ss_pred ccCCcEEEeecCCCCCCCHHH-HHHHHcCCCCcEEEecCC
Q 007802 407 AIKPTMLMGTSGVGKTFTKEV-VEAMASFNEKPVIFALSN 445 (589)
Q Consensus 407 ~vkPtvLIG~S~~~g~Fteev-v~~Ma~~~erPIIFaLSN 445 (589)
...|.+=|-.-.. .++++. .+.+ .+-.||+--+.
T Consensus 64 ~~~p~v~i~~~~~--~~~~~~~~~~~---~~~diVi~~~d 98 (143)
T cd01483 64 ELNPGVNVTAVPE--GISEDNLDDFL---DGVDLVIDAID 98 (143)
T ss_pred HHCCCcEEEEEee--ecChhhHHHHh---cCCCEEEECCC
Confidence 7777765543322 234332 2222 24456665444
No 163
>PRK08291 ectoine utilization protein EutC; Validated
Probab=80.92 E-value=13 Score=39.63 Aligned_cols=115 Identities=15% Similarity=0.200 Sum_probs=64.7
Q ss_pred HHHHHHHHhCCCCCCceEEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEcccCcccCCcccCCchhchhhhcc
Q 007802 315 GILSALKLVGGTLADQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLIVSSRKESLQHFKKPWAHE 394 (589)
Q Consensus 315 gll~Alr~~g~~l~d~riv~~GAGsAg~GiA~ll~~~~~~~~G~s~eeA~~~i~~vD~~GLv~~~r~~~l~~~k~~fa~~ 394 (589)
|++++..... -..++++|+|+|..|..++..+... .++ ++|.++|+. .++ .......+.+.
T Consensus 120 ~~~a~~~la~--~~~~~v~IiGaG~~a~~~~~al~~~----~~~------~~V~v~~R~----~~~---a~~l~~~~~~~ 180 (330)
T PRK08291 120 GAVAARHLAR--EDASRAAVIGAGEQARLQLEALTLV----RPI------REVRVWARD----AAK---AEAYAADLRAE 180 (330)
T ss_pred HHHHHHHhCC--CCCCEEEEECCCHHHHHHHHHHHhc----CCC------CEEEEEcCC----HHH---HHHHHHHHhhc
Confidence 4455554432 2347999999999988777766432 243 678888763 111 22222222211
Q ss_pred ----cCCCCCHHHHHhccCCcEEEeecCC-CCCCCHHHHHHHHcCCCCcEEEec-CCCCCCCCCCHHH
Q 007802 395 ----HAPIKSLLDAVKAIKPTMLMGTSGV-GKTFTKEVVEAMASFNEKPVIFAL-SNPTSQSECTAEE 456 (589)
Q Consensus 395 ----~~~~~~L~e~V~~vkPtvLIG~S~~-~g~Fteevv~~Ma~~~erPIIFaL-SNPt~~~E~t~ed 456 (589)
-....++.++++. .|++|-++.. ...|+.+.++. .--|.++ |+-..+-|+.|+-
T Consensus 181 ~g~~v~~~~d~~~al~~--aDiVi~aT~s~~p~i~~~~l~~------g~~v~~vg~d~~~~rEld~~~ 240 (330)
T PRK08291 181 LGIPVTVARDVHEAVAG--ADIIVTTTPSEEPILKAEWLHP------GLHVTAMGSDAEHKNEIAPAV 240 (330)
T ss_pred cCceEEEeCCHHHHHcc--CCEEEEeeCCCCcEecHHHcCC------CceEEeeCCCCCCcccCCHHH
Confidence 1123678999985 8999876433 34566666542 1123333 4433456888765
No 164
>cd01487 E1_ThiF_like E1_ThiF_like. Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=80.76 E-value=2.1 Score=41.43 Aligned_cols=32 Identities=34% Similarity=0.389 Sum_probs=28.3
Q ss_pred eEEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEccc
Q 007802 331 TFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSK 373 (589)
Q Consensus 331 riv~~GAGsAg~GiA~ll~~~~~~~~G~s~eeA~~~i~~vD~~ 373 (589)
||+++|+|..|..||+.|+.+ |+ ++|.++|.+
T Consensus 1 ~VlViG~GglGs~ia~~La~~-----Gv------g~i~lvD~D 32 (174)
T cd01487 1 KVGIAGAGGLGSNIAVLLARS-----GV------GNLKLVDFD 32 (174)
T ss_pred CEEEECcCHHHHHHHHHHHHc-----CC------CeEEEEeCC
Confidence 689999999999999999764 76 789999997
No 165
>TIGR00507 aroE shikimate 5-dehydrogenase. This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain.
Probab=80.58 E-value=3.9 Score=41.98 Aligned_cols=57 Identities=21% Similarity=0.291 Sum_probs=38.4
Q ss_pred CCceeccCCCchHHHHHHHHHHHHHHhCCCCCCceEEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEccc
Q 007802 297 SHLVFNDDIQGTASVVLAGILSALKLVGGTLADQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSK 373 (589)
Q Consensus 297 ~~~~FnDDiQGTaaV~lAgll~Alr~~g~~l~d~riv~~GAGsAg~GiA~ll~~~~~~~~G~s~eeA~~~i~~vD~~ 373 (589)
++.-||-|- .|++.+++..+...++.+++|+|+|.+|..++..+.+ .| .+++++|+.
T Consensus 93 ~l~g~NTD~--------~G~~~~l~~~~~~~~~k~vliiGaGg~g~aia~~L~~-----~g-------~~v~v~~R~ 149 (270)
T TIGR00507 93 KLVGYNTDG--------IGLVSDLERLIPLRPNQRVLIIGAGGAARAVALPLLK-----AD-------CNVIIANRT 149 (270)
T ss_pred EEEEEcCCH--------HHHHHHHHhcCCCccCCEEEEEcCcHHHHHHHHHHHH-----CC-------CEEEEEeCC
Confidence 355566664 4556666554555668899999999888777776653 24 368888763
No 166
>PRK06436 glycerate dehydrogenase; Provisional
Probab=80.52 E-value=25 Score=37.37 Aligned_cols=126 Identities=12% Similarity=0.106 Sum_probs=79.1
Q ss_pred chHHHHHHHHHHHHHH----------------hCCCCCCceEEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEE
Q 007802 307 GTASVVLAGILSALKL----------------VGGTLADQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLV 370 (589)
Q Consensus 307 GTaaV~lAgll~Alr~----------------~g~~l~d~riv~~GAGsAg~GiA~ll~~~~~~~~G~s~eeA~~~i~~v 370 (589)
..|=-+++-+|+..|- .+..|.++++.|+|-|..|..+|+++. ++ |+ +++.+
T Consensus 84 ~VAE~~l~l~L~l~R~i~~~~~~~~~g~w~~~~~~~L~gktvgIiG~G~IG~~vA~~l~-af----G~-------~V~~~ 151 (303)
T PRK06436 84 SVAEHAFALLLAWAKNICENNYNMKNGNFKQSPTKLLYNKSLGILGYGGIGRRVALLAK-AF----GM-------NIYAY 151 (303)
T ss_pred HHHHHHHHHHHHHHcChHHHHHHHHcCCCCCCCCCCCCCCEEEEECcCHHHHHHHHHHH-HC----CC-------EEEEE
Confidence 3444556666666552 245799999999999999999998664 32 64 58888
Q ss_pred cccCcccCCcccCCchhchhhhcccCCCCCHHHHHhccCCcEEEeecC----CCCCCCHHHHHHHHcCCCCcEEEecCCC
Q 007802 371 DSKGLIVSSRKESLQHFKKPWAHEHAPIKSLLDAVKAIKPTMLMGTSG----VGKTFTKEVVEAMASFNEKPVIFALSNP 446 (589)
Q Consensus 371 D~~GLv~~~r~~~l~~~k~~fa~~~~~~~~L~e~V~~vkPtvLIG~S~----~~g~Fteevv~~Ma~~~erPIIFaLSNP 446 (589)
|+... .... . ....+|.|+++. .|+++=.-. .-+.|+++.++.|. +..++.=.|.-
T Consensus 152 ~r~~~-----~~~~---~-------~~~~~l~ell~~--aDiv~~~lp~t~~T~~li~~~~l~~mk---~ga~lIN~sRG 211 (303)
T PRK06436 152 TRSYV-----NDGI---S-------SIYMEPEDIMKK--SDFVLISLPLTDETRGMINSKMLSLFR---KGLAIINVARA 211 (303)
T ss_pred CCCCc-----ccCc---c-------cccCCHHHHHhh--CCEEEECCCCCchhhcCcCHHHHhcCC---CCeEEEECCCc
Confidence 87521 0101 0 012478998876 888874321 23688999999995 56788877764
Q ss_pred CCCCCCCHHHHhccccCcEE
Q 007802 447 TSQSECTAEEAYTWSKGQAI 466 (589)
Q Consensus 447 t~~~E~t~eda~~wT~Grai 466 (589)
..--|-.-.+|++ +|+..
T Consensus 212 ~~vd~~aL~~aL~--~g~i~ 229 (303)
T PRK06436 212 DVVDKNDMLNFLR--NHNDK 229 (303)
T ss_pred cccCHHHHHHHHH--cCCce
Confidence 4223322333443 55544
No 167
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=80.44 E-value=14 Score=37.88 Aligned_cols=32 Identities=34% Similarity=0.529 Sum_probs=26.0
Q ss_pred ceEEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEccc
Q 007802 330 QTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSK 373 (589)
Q Consensus 330 ~riv~~GAGsAg~GiA~ll~~~~~~~~G~s~eeA~~~i~~vD~~ 373 (589)
+||.|+|+|..|.+||..+... |. +++++|.+
T Consensus 4 ~kI~VIG~G~mG~~ia~~la~~-----g~-------~V~~~d~~ 35 (282)
T PRK05808 4 QKIGVIGAGTMGNGIAQVCAVA-----GY-------DVVMVDIS 35 (282)
T ss_pred cEEEEEccCHHHHHHHHHHHHC-----CC-------ceEEEeCC
Confidence 5899999999999999988542 64 58888854
No 168
>PRK06476 pyrroline-5-carboxylate reductase; Reviewed
Probab=80.44 E-value=30 Score=35.01 Aligned_cols=95 Identities=13% Similarity=0.175 Sum_probs=52.9
Q ss_pred eEEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEcccCcccCCcccCCchhchhhhcccCCCCCHHHHHhccCC
Q 007802 331 TFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLIVSSRKESLQHFKKPWAHEHAPIKSLLDAVKAIKP 410 (589)
Q Consensus 331 riv~~GAGsAg~GiA~ll~~~~~~~~G~s~eeA~~~i~~vD~~GLv~~~r~~~l~~~k~~fa~~~~~~~~L~e~V~~vkP 410 (589)
||.|+|+|..|..+++-|... |.. .+.+++.|+. . +........+. ......+..|+++. .
T Consensus 2 ~IgiIG~G~mG~aia~~L~~~-----g~~----~~~i~v~~r~----~---~~~~~l~~~~~-~~~~~~~~~~~~~~--a 62 (258)
T PRK06476 2 KIGFIGTGAITEAMVTGLLTS-----PAD----VSEIIVSPRN----A---QIAARLAERFP-KVRIAKDNQAVVDR--S 62 (258)
T ss_pred eEEEECcCHHHHHHHHHHHhC-----CCC----hheEEEECCC----H---HHHHHHHHHcC-CceEeCCHHHHHHh--C
Confidence 689999999999999988653 542 2456666642 1 11222222221 01122567777765 5
Q ss_pred cEEEeecCCCCCCCHHHHHHHHcCCCCcEEEecCCCC
Q 007802 411 TMLMGTSGVGKTFTKEVVEAMASFNEKPVIFALSNPT 447 (589)
Q Consensus 411 tvLIG~S~~~g~Fteevv~~Ma~~~erPIIFaLSNPt 447 (589)
|++| ++..+..+ +++++... ..+..+|+..+-++
T Consensus 63 DvVi-lav~p~~~-~~vl~~l~-~~~~~~vis~~ag~ 96 (258)
T PRK06476 63 DVVF-LAVRPQIA-EEVLRALR-FRPGQTVISVIAAT 96 (258)
T ss_pred CEEE-EEeCHHHH-HHHHHHhc-cCCCCEEEEECCCC
Confidence 6655 33334333 66666652 33456777776665
No 169
>TIGR01285 nifN nitrogenase molybdenum-iron cofactor biosynthesis protein NifN. This protein forms a complex with NifE, and appears as a NifEN in some species. NifEN is a required for producing the molybdenum-iron cofactor of molybdenum-requiring nitrogenases. NifN is closely related to the nitrogenase molybdenum-iron protein beta chain NifK. This model describes most examples of NifN but excludes some cases, such as the putative NifN of Chlorobium tepidum, for which a separate model may be created.
Probab=80.27 E-value=3.3 Score=45.84 Aligned_cols=84 Identities=14% Similarity=0.033 Sum_probs=48.3
Q ss_pred HHHHHHhCCCCCCceEEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEcccCcccCCcccCCchhchhhhcccC
Q 007802 317 LSALKLVGGTLADQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLIVSSRKESLQHFKKPWAHEHA 396 (589)
Q Consensus 317 l~Alr~~g~~l~d~riv~~GAGsAg~GiA~ll~~~~~~~~G~s~eeA~~~i~~vD~~GLv~~~r~~~l~~~k~~fa~~~~ 396 (589)
+.++.-....|.+.|++++|-+.-..|+++.+.+ .|+.. ..+..-+..... ..+... .-+. .
T Consensus 299 ~~~l~~~~~~l~Gkrvai~~~~~~~~~l~~~l~e-----lGm~v----~~~~~~~~~~~~-----~~~~~~-~~~~---~ 360 (432)
T TIGR01285 299 QDAMLDTHFFLGGKKVAIAAEPDLLAAWATFFTS-----MGAQI----VAAVTTTGSPLL-----QKLPVE-TVVI---G 360 (432)
T ss_pred HHHHHHHHHhhCCCEEEEEcCHHHHHHHHHHHHH-----CCCEE----EEEEeCCCCHHH-----HhCCcC-cEEe---C
Confidence 4444455557788999999988889999998754 47732 111111111000 011111 0111 1
Q ss_pred CCCCHHHHHhccCCcEEEeecC
Q 007802 397 PIKSLLDAVKAIKPTMLMGTSG 418 (589)
Q Consensus 397 ~~~~L~e~V~~vkPtvLIG~S~ 418 (589)
+...|.+.+++.+|+++||-|-
T Consensus 361 D~~~l~~~i~~~~~dliig~s~ 382 (432)
T TIGR01285 361 DLEDLEDLACAAGADLLITNSH 382 (432)
T ss_pred CHHHHHHHHhhcCCCEEEECcc
Confidence 2246788898899999998654
No 170
>cd05290 LDH_3 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=80.13 E-value=4.9 Score=42.65 Aligned_cols=102 Identities=17% Similarity=0.299 Sum_probs=65.1
Q ss_pred eEEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEcccCcccCCcccCCchhchhhhc-ccCC--CCCHHHHHhc
Q 007802 331 TFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLIVSSRKESLQHFKKPWAH-EHAP--IKSLLDAVKA 407 (589)
Q Consensus 331 riv~~GAGsAg~GiA~ll~~~~~~~~G~s~eeA~~~i~~vD~~GLv~~~r~~~l~~~k~~fa~-~~~~--~~~L~e~V~~ 407 (589)
||.|+|||..|..+|-.|+. .|+ .+.+.|+|.+-=..++..-+|.+.. .|.. .... ..+ .+.++.
T Consensus 1 Ki~IIGaG~VG~~~a~~l~~-----~~~-----~~elvL~Di~~~~a~g~a~DL~~~~-~~~~~~~~~i~~~~-y~~~~~ 68 (307)
T cd05290 1 KLVVIGAGHVGSAVLNYALA-----LGL-----FSEIVLIDVNEGVAEGEALDFHHAT-ALTYSTNTKIRAGD-YDDCAD 68 (307)
T ss_pred CEEEECCCHHHHHHHHHHHh-----cCC-----CCEEEEEeCCcchhhHHHHHHHhhh-ccCCCCCEEEEECC-HHHhCC
Confidence 68999999999999998764 255 2579999974111111111233221 2221 0001 133 456665
Q ss_pred cCCcEEEeecCCC---CCCC--------------HHHHHHHHcCCCCcEEEecCCCC
Q 007802 408 IKPTMLMGTSGVG---KTFT--------------KEVVEAMASFNEKPVIFALSNPT 447 (589)
Q Consensus 408 vkPtvLIG~S~~~---g~Ft--------------eevv~~Ma~~~erPIIFaLSNPt 447 (589)
.|++|=+.+.+ | -| +++++.+.+++...|++-.|||.
T Consensus 69 --aDivvitaG~~~kpg-~tr~R~dll~~N~~I~~~i~~~i~~~~p~~i~ivvsNPv 122 (307)
T cd05290 69 --ADIIVITAGPSIDPG-NTDDRLDLAQTNAKIIREIMGNITKVTKEAVIILITNPL 122 (307)
T ss_pred --CCEEEECCCCCCCCC-CCchHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEecCcH
Confidence 88888666653 3 23 57888899999999999999997
No 171
>PRK07574 formate dehydrogenase; Provisional
Probab=80.13 E-value=14 Score=40.72 Aligned_cols=116 Identities=16% Similarity=0.145 Sum_probs=74.2
Q ss_pred CCCCCCceEEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEcccCcccCCcccCCchhchhhhcccCCCCCHHH
Q 007802 324 GGTLADQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLIVSSRKESLQHFKKPWAHEHAPIKSLLD 403 (589)
Q Consensus 324 g~~l~d~riv~~GAGsAg~GiA~ll~~~~~~~~G~s~eeA~~~i~~vD~~GLv~~~r~~~l~~~k~~fa~~~~~~~~L~e 403 (589)
+..|.+++|.|+|.|..|..+|+.+... |+ +++.+|+...-. + . .+.+ ......+|.|
T Consensus 187 ~~~L~gktVGIvG~G~IG~~vA~~l~~f-----G~-------~V~~~dr~~~~~----~-~---~~~~--g~~~~~~l~e 244 (385)
T PRK07574 187 SYDLEGMTVGIVGAGRIGLAVLRRLKPF-----DV-------KLHYTDRHRLPE----E-V---EQEL--GLTYHVSFDS 244 (385)
T ss_pred ceecCCCEEEEECCCHHHHHHHHHHHhC-----CC-------EEEEECCCCCch----h-h---Hhhc--CceecCCHHH
Confidence 3458999999999999999999988643 64 477788753210 0 0 0011 0111357999
Q ss_pred HHhccCCcEEEeecC----CCCCCCHHHHHHHHcCCCCcEEEecCCCCCCCCCCHHHHhc--cccCcEEEeeC
Q 007802 404 AVKAIKPTMLMGTSG----VGKTFTKEVVEAMASFNEKPVIFALSNPTSQSECTAEEAYT--WSKGQAIFASG 470 (589)
Q Consensus 404 ~V~~vkPtvLIG~S~----~~g~Fteevv~~Ma~~~erPIIFaLSNPt~~~E~t~eda~~--wT~GraifAsG 470 (589)
+++. .|+++=.-- .-++|+++.+..|. +..++.=.|. .++.-++|+. ...|+.-.|..
T Consensus 245 ll~~--aDvV~l~lPlt~~T~~li~~~~l~~mk---~ga~lIN~aR----G~iVDe~AL~~AL~sG~i~GAaL 308 (385)
T PRK07574 245 LVSV--CDVVTIHCPLHPETEHLFDADVLSRMK---RGSYLVNTAR----GKIVDRDAVVRALESGHLAGYAG 308 (385)
T ss_pred Hhhc--CCEEEEcCCCCHHHHHHhCHHHHhcCC---CCcEEEECCC----CchhhHHHHHHHHHhCCccEEEE
Confidence 9986 898873321 13689999999995 5667776665 4455454442 13576655544
No 172
>TIGR01759 MalateDH-SF1 malate dehydrogenase. This model represents a family of malate dehydrogenases in bacteria and eukaryotes which utilize either NAD or NADP depending on the species and context. MDH interconverts malate and oxaloacetate and is a part of the citric acid cycle as well as the C4 cycle in certain photosynthetic organisms.
Probab=79.98 E-value=9.7 Score=40.78 Aligned_cols=122 Identities=16% Similarity=0.098 Sum_probs=71.3
Q ss_pred ceEEEeCc-ChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEcccCcc--cCCcccCCchhchhhhcccCCCCCHHHHHh
Q 007802 330 QTFLFLGA-GEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLI--VSSRKESLQHFKKPWAHEHAPIKSLLDAVK 406 (589)
Q Consensus 330 ~riv~~GA-GsAg~GiA~ll~~~~~~~~G~s~eeA~~~i~~vD~~GLv--~~~r~~~l~~~k~~fa~~~~~~~~L~e~V~ 406 (589)
-||.|+|| |..|..+|-.|+. .|+-.-+-...|.|+|.+.-. .++..-+|.+..-++-+...-..+..+.++
T Consensus 4 ~KV~IIGa~G~VG~~~a~~l~~-----~~~~~~~~~~el~L~Di~~~~~~a~g~a~Dl~~~~~~~~~~~~i~~~~~~~~~ 78 (323)
T TIGR01759 4 VRVAVTGAAGQIGYSLLFRIAS-----GELFGKDQPVVLHLLDIPPAMKALEGVAMELEDCAFPLLAGVVATTDPEEAFK 78 (323)
T ss_pred eEEEEECCCcHHHHHHHHHHHh-----CCcccCCCccEEEEEecCCcccccchHHHHHhhccccccCCcEEecChHHHhC
Confidence 37999998 9999999987764 254100011279999986311 111111233322122221111135567777
Q ss_pred ccCCcEEEeecCCC---CC-----------CCHHHHHHHHcCCC-CcEEEecCCCCCCCCCCHHHHhccc
Q 007802 407 AIKPTMLMGTSGVG---KT-----------FTKEVVEAMASFNE-KPVIFALSNPTSQSECTAEEAYTWS 461 (589)
Q Consensus 407 ~vkPtvLIG~S~~~---g~-----------Fteevv~~Ma~~~e-rPIIFaLSNPt~~~E~t~eda~~wT 461 (589)
+ .|++|=+.+.+ |- .=+++++.+++++. .-||+--|||. ....--+++++
T Consensus 79 d--aDvVVitAG~~~k~g~tR~dll~~Na~i~~~i~~~i~~~~~~~~iiivvsNPv---Dv~t~v~~k~s 143 (323)
T TIGR01759 79 D--VDAALLVGAFPRKPGMERADLLSKNGKIFKEQGKALNKVAKKDVKVLVVGNPA---NTNALIASKNA 143 (323)
T ss_pred C--CCEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEeCCcH---HHHHHHHHHHc
Confidence 6 89888555553 31 12467788889997 99999999997 33444444444
No 173
>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=79.91 E-value=10 Score=41.85 Aligned_cols=116 Identities=18% Similarity=0.224 Sum_probs=62.8
Q ss_pred CCCceEEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEcccCcccCCcccCCchhchhhhcccC---CCCCHHH
Q 007802 327 LADQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLIVSSRKESLQHFKKPWAHEHA---PIKSLLD 403 (589)
Q Consensus 327 l~d~riv~~GAGsAg~GiA~ll~~~~~~~~G~s~eeA~~~i~~vD~~GLv~~~r~~~l~~~k~~fa~~~~---~~~~L~e 403 (589)
+..+||+|+|.|-.|+++|++|.. .|. .+..+|.+-- ....+.-..+....- ......+
T Consensus 12 ~~~~~i~v~G~G~sG~a~a~~L~~-----~G~-------~V~~~D~~~~------~~~~~~~~~l~~~gi~~~~~~~~~~ 73 (458)
T PRK01710 12 IKNKKVAVVGIGVSNIPLIKFLVK-----LGA-------KVTAFDKKSE------EELGEVSNELKELGVKLVLGENYLD 73 (458)
T ss_pred hcCCeEEEEcccHHHHHHHHHHHH-----CCC-------EEEEECCCCC------ccchHHHHHHHhCCCEEEeCCCChH
Confidence 456799999999999999998865 363 5778886420 001110001111000 0011234
Q ss_pred HHhccCCcEEEeecCCCCCCCHHHHHHHHcCCCCcEEEecCCCCCCCCCCHHHHhccccCcEEEeeCCCCCcceeCCeee
Q 007802 404 AVKAIKPTMLMGTSGVGKTFTKEVVEAMASFNEKPVIFALSNPTSQSECTAEEAYTWSKGQAIFASGSPFDPVEYNGKVF 483 (589)
Q Consensus 404 ~V~~vkPtvLIG~S~~~g~Fteevv~~Ma~~~erPIIFaLSNPt~~~E~t~eda~~wT~GraifAsGSPf~pv~~~G~~~ 483 (589)
-++ ++|.+|=.++.+ .-.+++.++.. ..-||+ +.+| -++++.+.+.|-.||| +|||-
T Consensus 74 ~~~--~~dlVV~Spgi~-~~~p~~~~a~~--~~i~i~-------s~~e----~~~~~~~~~vIaITGT-------nGKTT 130 (458)
T PRK01710 74 KLD--GFDVIFKTPSMR-IDSPELVKAKE--EGAYIT-------SEME----EFIKYCPAKVFGVTGS-------DGKTT 130 (458)
T ss_pred Hhc--cCCEEEECCCCC-CCchHHHHHHH--cCCcEE-------echH----HhhhhcCCCEEEEECC-------CCHHH
Confidence 343 478666333333 23455555544 346775 2233 3444445678889997 67653
No 174
>PRK09310 aroDE bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase protein; Reviewed
Probab=79.76 E-value=3.7 Score=46.06 Aligned_cols=48 Identities=29% Similarity=0.410 Sum_probs=37.2
Q ss_pred HHHHHHHHHhCCCCCCceEEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEccc
Q 007802 314 AGILSALKLVGGTLADQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSK 373 (589)
Q Consensus 314 Agll~Alr~~g~~l~d~riv~~GAGsAg~GiA~ll~~~~~~~~G~s~eeA~~~i~~vD~~ 373 (589)
.|++.+++..+.++++.+++|+|+|.+|.+++..+.. .|. +++++|++
T Consensus 317 ~G~~~~l~~~~~~~~~k~vlIiGaGgiG~aia~~L~~-----~G~-------~V~i~~R~ 364 (477)
T PRK09310 317 EGLFSLLKQKNIPLNNQHVAIVGAGGAAKAIATTLAR-----AGA-------ELLIFNRT 364 (477)
T ss_pred HHHHHHHHhcCCCcCCCEEEEEcCcHHHHHHHHHHHH-----CCC-------EEEEEeCC
Confidence 4778888888889999999999999777777776653 352 57777763
No 175
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=79.71 E-value=5.8 Score=40.44 Aligned_cols=101 Identities=13% Similarity=0.133 Sum_probs=56.4
Q ss_pred eEEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEcccCcccCCc-ccCCchhchhhhcccCCCCCHHHHHhccC
Q 007802 331 TFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLIVSSR-KESLQHFKKPWAHEHAPIKSLLDAVKAIK 409 (589)
Q Consensus 331 riv~~GAGsAg~GiA~ll~~~~~~~~G~s~eeA~~~i~~vD~~GLv~~~r-~~~l~~~k~~fa~~~~~~~~L~e~V~~vk 409 (589)
||.|+|+|+.|..+|..+.++ | .+++++|+++=-.+.- ...+.-....+........++.++ + +
T Consensus 2 ~I~IiG~G~~G~~~a~~L~~~-----g-------~~V~~~~r~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~--~ 66 (304)
T PRK06522 2 KIAILGAGAIGGLFGAALAQA-----G-------HDVTLVARRGAHLDALNENGLRLEDGEITVPVLAADDPAEL-G--P 66 (304)
T ss_pred EEEEECCCHHHHHHHHHHHhC-----C-------CeEEEEECChHHHHHHHHcCCcccCCceeecccCCCChhHc-C--C
Confidence 799999999999999888652 4 4688888742111000 000100000000000112345553 3 5
Q ss_pred CcEEEeecCCCCCCCHHHHHHHHcCCC-CcEEEecCCCCC
Q 007802 410 PTMLMGTSGVGKTFTKEVVEAMASFNE-KPVIFALSNPTS 448 (589)
Q Consensus 410 PtvLIG~S~~~g~Fteevv~~Ma~~~e-rPIIFaLSNPt~ 448 (589)
+|++| ++... --++++++.++.+.. .-+|+.+.|.-.
T Consensus 67 ~d~vi-la~k~-~~~~~~~~~l~~~l~~~~~iv~~~nG~~ 104 (304)
T PRK06522 67 QDLVI-LAVKA-YQLPAALPSLAPLLGPDTPVLFLQNGVG 104 (304)
T ss_pred CCEEE-Eeccc-ccHHHHHHHHhhhcCCCCEEEEecCCCC
Confidence 78777 44433 347999999987543 346777999753
No 176
>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated
Probab=79.69 E-value=8.3 Score=43.66 Aligned_cols=97 Identities=15% Similarity=0.078 Sum_probs=55.0
Q ss_pred cCCcEEEeecCCCCCCCHHHHHHHHcCCCCcEEEecCCCCC---CCCC-----CHHHHhccc------cCcEEEeeCCCC
Q 007802 408 IKPTMLMGTSGVGKTFTKEVVEAMASFNEKPVIFALSNPTS---QSEC-----TAEEAYTWS------KGQAIFASGSPF 473 (589)
Q Consensus 408 vkPtvLIG~S~~~g~Fteevv~~Ma~~~erPIIFaLSNPt~---~~E~-----t~eda~~wT------~GraifAsGSPf 473 (589)
.+|+++|...+. .++.+-+..-.++-+|=+-+-.-||.. +.|+ |.++++++. =|+..+-.|
T Consensus 112 ~~~~ailasntS--tl~i~~la~~~~~p~r~~G~hff~Pa~v~~LvEvv~g~~Ts~~~~~~~~~l~~~lgk~pv~v~--- 186 (507)
T PRK08268 112 VSPDCILATNTS--SLSITAIAAALKHPERVAGLHFFNPVPLMKLVEVVSGLATDPAVADALYALARAWGKTPVRAK--- 186 (507)
T ss_pred CCCCcEEEECCC--CCCHHHHHhhcCCcccEEEEeecCCcccCeeEEEeCCCCCCHHHHHHHHHHHHHcCCceEEec---
Confidence 478888874332 233333333333334447777788653 2232 344444431 133222222
Q ss_pred CcceeCCeeeCCCCccccccchhhhHHHHHhCCcccCHHHHHHHH
Q 007802 474 DPVEYNGKVFVPGQGNNAYIFPGLGLGLIISGAIRVRDEMLLAAS 518 (589)
Q Consensus 474 ~pv~~~G~~~~p~Q~NN~~iFPGiglG~~~~~a~~Itd~m~~aAA 518 (589)
..||-.+|-..+|.+.=+..+...--++.+-+..+-
T Consensus 187 ---------d~pGfi~Nrll~~~~~Ea~~l~~~g~~~~~~iD~al 222 (507)
T PRK08268 187 ---------DTPGFIVNRAARPYYTEALRVLEEGVADPATIDAIL 222 (507)
T ss_pred ---------CCCChHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 246789999999988888888776667666666554
No 177
>PRK14185 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=79.62 E-value=8.6 Score=40.92 Aligned_cols=88 Identities=19% Similarity=0.245 Sum_probs=65.2
Q ss_pred hHHHHHHHHHHHHHHhCCCCCCceEEEeCcCh-HHHHHHHHHHHHHHhccCCCHHhhcCeEEEEcccCcccCCcccCCch
Q 007802 308 TASVVLAGILSALKLVGGTLADQTFLFLGAGE-AGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLIVSSRKESLQH 386 (589)
Q Consensus 308 TaaV~lAgll~Alr~~g~~l~d~riv~~GAGs-Ag~GiA~ll~~~~~~~~G~s~eeA~~~i~~vD~~GLv~~~r~~~l~~ 386 (589)
-.-+|-.|++.=++-.+.+|+++++|++|.+. .|.-+|.||.. .|.+. --.+.+|.++
T Consensus 136 ~~PcTp~av~~lL~~~~i~l~GK~vvViGrS~iVGkPla~lL~~-----~~~~~---~aTVtvchs~------------- 194 (293)
T PRK14185 136 FVSATPNGILELLKRYHIETSGKKCVVLGRSNIVGKPMAQLMMQ-----KAYPG---DCTVTVCHSR------------- 194 (293)
T ss_pred CCCCCHHHHHHHHHHhCCCCCCCEEEEECCCccchHHHHHHHHc-----CCCCC---CCEEEEecCC-------------
Confidence 34667888888899999999999999999764 67777777743 23210 0124444332
Q ss_pred hchhhhcccCCCCCHHHHHhccCCcEEEeecCCCCCCCHHHHH
Q 007802 387 FKKPWAHEHAPIKSLLDAVKAIKPTMLMGTSGVGKTFTKEVVE 429 (589)
Q Consensus 387 ~k~~fa~~~~~~~~L~e~V~~vkPtvLIG~S~~~g~Fteevv~ 429 (589)
.++|.+.+++ +|++|-..+.++.++.|+|+
T Consensus 195 -----------T~nl~~~~~~--ADIvIsAvGkp~~i~~~~vk 224 (293)
T PRK14185 195 -----------SKNLKKECLE--ADIIIAALGQPEFVKADMVK 224 (293)
T ss_pred -----------CCCHHHHHhh--CCEEEEccCCcCccCHHHcC
Confidence 1468888886 99999999999999999987
No 178
>PRK06153 hypothetical protein; Provisional
Probab=79.46 E-value=2.5 Score=46.60 Aligned_cols=102 Identities=15% Similarity=0.245 Sum_probs=64.6
Q ss_pred CCCCCceEEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEcccCcccCCcccCCchhchhhhccc-----CCCC
Q 007802 325 GTLADQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLIVSSRKESLQHFKKPWAHEH-----APIK 399 (589)
Q Consensus 325 ~~l~d~riv~~GAGsAg~GiA~ll~~~~~~~~G~s~eeA~~~i~~vD~~GLv~~~r~~~l~~~k~~fa~~~-----~~~~ 399 (589)
.+|++.||+|+|+|..|.-|+++|+.. |+ ++|.++|.+=+ .. .+|+.+.--|-.+. ....
T Consensus 172 ~kL~~~~VaIVG~GG~GS~Va~~LAR~-----GV------geI~LVD~D~V-e~---SNLnRQ~gaf~~~DvGk~~~KVe 236 (393)
T PRK06153 172 AKLEGQRIAIIGLGGTGSYILDLVAKT-----PV------REIHLFDGDDF-LQ---HNAFRSPGAASIEELREAPKKVD 236 (393)
T ss_pred HHHhhCcEEEEcCCccHHHHHHHHHHc-----CC------CEEEEECCCEe-cc---cccccccccCCHhHcCCcchHHH
Confidence 578999999999999999999999774 76 78999999822 22 13433321121111 1123
Q ss_pred CHHHHHhccCCcEEEeecCCCCCCCHHHHHHHHcCCCCcEEE-ecCCCCC
Q 007802 400 SLLDAVKAIKPTMLMGTSGVGKTFTKEVVEAMASFNEKPVIF-ALSNPTS 448 (589)
Q Consensus 400 ~L~e~V~~vkPtvLIG~S~~~g~Fteevv~~Ma~~~erPIIF-aLSNPt~ 448 (589)
-+.+.+....|.+ ......++++-+..+. +-.+|| ++=|..+
T Consensus 237 vaa~rl~~in~~I----~~~~~~I~~~n~~~L~---~~DiV~dcvDn~~a 279 (393)
T PRK06153 237 YFKSRYSNMRRGI----VPHPEYIDEDNVDELD---GFTFVFVCVDKGSS 279 (393)
T ss_pred HHHHHHHHhCCeE----EEEeecCCHHHHHHhc---CCCEEEEcCCCHHH
Confidence 4667777777754 3344467888877663 445666 4445443
No 179
>PRK14168 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=79.41 E-value=8.7 Score=40.95 Aligned_cols=89 Identities=19% Similarity=0.251 Sum_probs=66.7
Q ss_pred chHHHHHHHHHHHHHHhCCCCCCceEEEeCcC-hHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEcccCcccCCcccCCc
Q 007802 307 GTASVVLAGILSALKLVGGTLADQTFLFLGAG-EAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLIVSSRKESLQ 385 (589)
Q Consensus 307 GTaaV~lAgll~Alr~~g~~l~d~riv~~GAG-sAg~GiA~ll~~~~~~~~G~s~eeA~~~i~~vD~~GLv~~~r~~~l~ 385 (589)
+-.-+|-.|++.=++-.|.++++++++++|.+ ..|.-+|.||.. .|+. ....+.++.++
T Consensus 139 ~~~PcTp~avi~lL~~~~i~l~Gk~vvViGrS~iVGkPla~lL~~-----~~~~---~~atVtv~hs~------------ 198 (297)
T PRK14168 139 KFLPCTPAGIQEMLVRSGVETSGAEVVVVGRSNIVGKPIANMMTQ-----KGPG---ANATVTIVHTR------------ 198 (297)
T ss_pred CCcCCCHHHHHHHHHHhCCCCCCCEEEEECCCCcccHHHHHHHHh-----cccC---CCCEEEEecCC------------
Confidence 44567788888889999999999999999975 467777777743 2321 01235555443
Q ss_pred hhchhhhcccCCCCCHHHHHhccCCcEEEeecCCCCCCCHHHHH
Q 007802 386 HFKKPWAHEHAPIKSLLDAVKAIKPTMLMGTSGVGKTFTKEVVE 429 (589)
Q Consensus 386 ~~k~~fa~~~~~~~~L~e~V~~vkPtvLIG~S~~~g~Fteevv~ 429 (589)
.++|.+.+++ +|++|-..+.++.++.++|+
T Consensus 199 ------------T~~l~~~~~~--ADIvVsAvGkp~~i~~~~ik 228 (297)
T PRK14168 199 ------------SKNLARHCQR--ADILIVAAGVPNLVKPEWIK 228 (297)
T ss_pred ------------CcCHHHHHhh--CCEEEEecCCcCccCHHHcC
Confidence 1358888986 99999999999999999997
No 180
>KOG0029 consensus Amine oxidase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=79.16 E-value=0.88 Score=51.40 Aligned_cols=37 Identities=24% Similarity=0.230 Sum_probs=26.9
Q ss_pred CCCceEEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCe
Q 007802 327 LADQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKK 366 (589)
Q Consensus 327 l~d~riv~~GAGsAg~GiA~ll~~~~~~~~G~s~eeA~~~ 366 (589)
.+..+|+|+|||-||+..|++|.+... .+..-|||.|
T Consensus 13 ~~~~~VIVIGAGiaGLsAArqL~~~G~---~V~VLEARdR 49 (501)
T KOG0029|consen 13 GKKKKVIVIGAGLAGLSAARQLQDFGF---DVLVLEARDR 49 (501)
T ss_pred cCCCcEEEECCcHHHHHHHHHHHHcCC---ceEEEeccCC
Confidence 345689999999999999999988632 1344455544
No 181
>PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=78.99 E-value=11 Score=39.16 Aligned_cols=92 Identities=15% Similarity=0.216 Sum_probs=55.3
Q ss_pred eEEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEcccCcccCCcccCCchhchhhhccc-CCCCCHHHHHhcc-
Q 007802 331 TFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLIVSSRKESLQHFKKPWAHEH-APIKSLLDAVKAI- 408 (589)
Q Consensus 331 riv~~GAGsAg~GiA~ll~~~~~~~~G~s~eeA~~~i~~vD~~GLv~~~r~~~l~~~k~~fa~~~-~~~~~L~e~V~~v- 408 (589)
||.|+|.|..|..+|..|... | .+++++|+.. .+ .. .++... ....++.|+++..
T Consensus 2 ~Ig~IGlG~MG~~mA~~L~~~-----g-------~~v~v~dr~~----~~---~~----~~~~~g~~~~~~~~e~~~~~~ 58 (301)
T PRK09599 2 QLGMIGLGRMGGNMARRLLRG-----G-------HEVVGYDRNP----EA---VE----ALAEEGATGADSLEELVAKLP 58 (301)
T ss_pred EEEEEcccHHHHHHHHHHHHC-----C-------CeEEEEECCH----HH---HH----HHHHCCCeecCCHHHHHhhcC
Confidence 799999999999999998653 5 3577777741 11 11 222211 1234777877765
Q ss_pred CCcEEEeecCCCCCCCHHHHHHHHc-CCCCcEEEecCCC
Q 007802 409 KPTMLMGTSGVGKTFTKEVVEAMAS-FNEKPVIFALSNP 446 (589)
Q Consensus 409 kPtvLIG~S~~~g~Fteevv~~Ma~-~~erPIIFaLSNP 446 (589)
+|+++|=+ -......++++..+.. ..+..||+-+|+-
T Consensus 59 ~~dvvi~~-v~~~~~~~~v~~~l~~~l~~g~ivid~st~ 96 (301)
T PRK09599 59 APRVVWLM-VPAGEITDATIDELAPLLSPGDIVIDGGNS 96 (301)
T ss_pred CCCEEEEE-ecCCcHHHHHHHHHHhhCCCCCEEEeCCCC
Confidence 36665533 2233355666655543 2456788888763
No 182
>PTZ00345 glycerol-3-phosphate dehydrogenase; Provisional
Probab=78.99 E-value=7.4 Score=42.41 Aligned_cols=24 Identities=17% Similarity=0.374 Sum_probs=21.0
Q ss_pred CCCceEEEeCcChHHHHHHHHHHH
Q 007802 327 LADQTFLFLGAGEAGTGIAELIAL 350 (589)
Q Consensus 327 l~d~riv~~GAGsAg~GiA~ll~~ 350 (589)
-...||.|+|+|+-|+.+|..+..
T Consensus 9 ~~~~ki~ViGaG~wGtAlA~~l~~ 32 (365)
T PTZ00345 9 CGPLKVSVIGSGNWGSAISKVVGE 32 (365)
T ss_pred cCCCeEEEECCCHHHHHHHHHHHh
Confidence 345799999999999999999875
No 183
>PRK14170 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=78.88 E-value=9.2 Score=40.56 Aligned_cols=85 Identities=20% Similarity=0.367 Sum_probs=66.4
Q ss_pred chHHHHHHHHHHHHHHhCCCCCCceEEEeCcCh-HHHHHHHHHHHHHHhccCCCHHhhcCeEEEEcccCcccCCcccCCc
Q 007802 307 GTASVVLAGILSALKLVGGTLADQTFLFLGAGE-AGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLIVSSRKESLQ 385 (589)
Q Consensus 307 GTaaV~lAgll~Alr~~g~~l~d~riv~~GAGs-Ag~GiA~ll~~~~~~~~G~s~eeA~~~i~~vD~~GLv~~~r~~~l~ 385 (589)
+-.-+|-+|++.=++-.|.+|+++++|++|.+. .|.-+|.||.. .| ..+.+|+++
T Consensus 135 ~~~PcTp~avi~lL~~~~i~l~Gk~vvVvGrS~iVGkPla~lL~~-----~~-------atVtichs~------------ 190 (284)
T PRK14170 135 SFVPCTPAGIIELIKSTGTQIEGKRAVVIGRSNIVGKPVAQLLLN-----EN-------ATVTIAHSR------------ 190 (284)
T ss_pred CCCCCCHHHHHHHHHHhCCCCCCCEEEEECCCCcchHHHHHHHHH-----CC-------CEEEEeCCC------------
Confidence 345677888899999999999999999999764 67777777753 24 235555542
Q ss_pred hhchhhhcccCCCCCHHHHHhccCCcEEEeecCCCCCCCHHHHH
Q 007802 386 HFKKPWAHEHAPIKSLLDAVKAIKPTMLMGTSGVGKTFTKEVVE 429 (589)
Q Consensus 386 ~~k~~fa~~~~~~~~L~e~V~~vkPtvLIG~S~~~g~Fteevv~ 429 (589)
.++|.+.+++ +|++|-..+.++.|+.++|+
T Consensus 191 ------------T~~l~~~~~~--ADIvI~AvG~~~~i~~~~vk 220 (284)
T PRK14170 191 ------------TKDLPQVAKE--ADILVVATGLAKFVKKDYIK 220 (284)
T ss_pred ------------CCCHHHHHhh--CCEEEEecCCcCccCHHHcC
Confidence 1347888886 99999999999999999997
No 184
>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=78.28 E-value=6.6 Score=41.72 Aligned_cols=124 Identities=17% Similarity=0.252 Sum_probs=74.9
Q ss_pred ceEEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEcccCcccCCcccCCchhchhhhccc--CCCCCHHHHHhc
Q 007802 330 QTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLIVSSRKESLQHFKKPWAHEH--APIKSLLDAVKA 407 (589)
Q Consensus 330 ~riv~~GAGsAg~GiA~ll~~~~~~~~G~s~eeA~~~i~~vD~~GLv~~~r~~~l~~~k~~fa~~~--~~~~~L~e~V~~ 407 (589)
.||.|+|||..|..+|-.|+. .|+ ...|.|+|.+-=..++-.-+|.+.. +|.... ....+.++ ++.
T Consensus 4 ~Ki~IiGaG~VG~~~a~~l~~-----~~~-----~~el~LiD~~~~~~~g~a~Dl~~~~-~~~~~~~v~~~~dy~~-~~~ 71 (312)
T cd05293 4 NKVTVVGVGQVGMACAISILA-----KGL-----ADELVLVDVVEDKLKGEAMDLQHGS-AFLKNPKIEADKDYSV-TAN 71 (312)
T ss_pred CEEEEECCCHHHHHHHHHHHh-----cCC-----CCEEEEEeCCccHHHHHHHHHHHhh-ccCCCCEEEECCCHHH-hCC
Confidence 499999999999999887754 255 3679999974211111111132222 232211 11135554 665
Q ss_pred cCCcEEEeecCCC---CCCCH------------HHHHHHHcCCCCcEEEecCCCCCCCCCCHHHHhccc--cCcEEEeeC
Q 007802 408 IKPTMLMGTSGVG---KTFTK------------EVVEAMASFNEKPVIFALSNPTSQSECTAEEAYTWS--KGQAIFASG 470 (589)
Q Consensus 408 vkPtvLIG~S~~~---g~Fte------------evv~~Ma~~~erPIIFaLSNPt~~~E~t~eda~~wT--~GraifAsG 470 (589)
.|++|=+.+.+ | -|. ++++.|.+++..-+|+-.|||.. ....-+++++ .-+=+|++|
T Consensus 72 --adivvitaG~~~k~g-~~R~dll~~N~~i~~~~~~~i~~~~p~~~vivvsNP~d---~~t~~~~k~sg~p~~~viG~g 145 (312)
T cd05293 72 --SKVVIVTAGARQNEG-ESRLDLVQRNVDIFKGIIPKLVKYSPNAILLVVSNPVD---IMTYVAWKLSGLPKHRVIGSG 145 (312)
T ss_pred --CCEEEECCCCCCCCC-CCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEccChHH---HHHHHHHHHhCCCHHHEEecC
Confidence 89887555443 3 343 67888899999999999999983 4444555543 112366666
Q ss_pred C
Q 007802 471 S 471 (589)
Q Consensus 471 S 471 (589)
.
T Consensus 146 t 146 (312)
T cd05293 146 C 146 (312)
T ss_pred c
Confidence 4
No 185
>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]
Probab=78.18 E-value=4 Score=44.11 Aligned_cols=109 Identities=22% Similarity=0.337 Sum_probs=72.7
Q ss_pred CCCceEEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEcccCcccCCcccCCchhchhhhcc----cCCCCCHH
Q 007802 327 LADQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLIVSSRKESLQHFKKPWAHE----HAPIKSLL 402 (589)
Q Consensus 327 l~d~riv~~GAGsAg~GiA~ll~~~~~~~~G~s~eeA~~~i~~vD~~GLv~~~r~~~l~~~k~~fa~~----~~~~~~L~ 402 (589)
...-+++++|.|-+|+--|++.+ |+. .++.++|.+ .+| |......|..+ ......|+
T Consensus 166 V~~~kv~iiGGGvvgtnaAkiA~-------glg-----A~Vtild~n----~~r---l~~ldd~f~~rv~~~~st~~~ie 226 (371)
T COG0686 166 VLPAKVVVLGGGVVGTNAAKIAI-------GLG-----ADVTILDLN----IDR---LRQLDDLFGGRVHTLYSTPSNIE 226 (371)
T ss_pred CCCccEEEECCccccchHHHHHh-------ccC-----CeeEEEecC----HHH---HhhhhHhhCceeEEEEcCHHHHH
Confidence 57789999999999999988653 553 467777764 233 44444445432 12234699
Q ss_pred HHHhccCCcEEEee-----cCCCCCCCHHHHHHHHcCC-------CCcEEEecCCCCCCCCCCHHH
Q 007802 403 DAVKAIKPTMLMGT-----SGVGKTFTKEVVEAMASFN-------EKPVIFALSNPTSQSECTAEE 456 (589)
Q Consensus 403 e~V~~vkPtvLIG~-----S~~~g~Fteevv~~Ma~~~-------erPIIFaLSNPt~~~E~t~ed 456 (589)
|++++ .|.+||. +..|.+.|+|+++.|.+.. +.==+|-=|.||+..+-|.+.
T Consensus 227 e~v~~--aDlvIgaVLIpgakaPkLvt~e~vk~MkpGsVivDVAiDqGGc~Et~~~TTh~~PtY~~ 290 (371)
T COG0686 227 EAVKK--ADLVIGAVLIPGAKAPKLVTREMVKQMKPGSVIVDVAIDQGGCFETSHPTTHDDPTYEV 290 (371)
T ss_pred HHhhh--ccEEEEEEEecCCCCceehhHHHHHhcCCCcEEEEEEEcCCCceeccccccCCCCceee
Confidence 99985 9999887 4556678999999996321 111235556777777666554
No 186
>KOG0685 consensus Flavin-containing amine oxidase [Coenzyme transport and metabolism]
Probab=78.08 E-value=1 Score=50.63 Aligned_cols=26 Identities=23% Similarity=0.331 Sum_probs=22.3
Q ss_pred CCCCCceEEEeCcChHHHHHHHHHHH
Q 007802 325 GTLADQTFLFLGAGEAGTGIAELIAL 350 (589)
Q Consensus 325 ~~l~d~riv~~GAGsAg~GiA~ll~~ 350 (589)
+...+.||||+|||.||++.|..|++
T Consensus 17 ~~~~~~kIvIIGAG~AGLaAA~rLle 42 (498)
T KOG0685|consen 17 KARGNAKIVIIGAGIAGLAAATRLLE 42 (498)
T ss_pred hccCCceEEEECCchHHHHHHHHHHH
Confidence 34566699999999999999999984
No 187
>PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E ....
Probab=78.04 E-value=3.5 Score=38.88 Aligned_cols=32 Identities=22% Similarity=0.391 Sum_probs=25.7
Q ss_pred eEEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEcccC
Q 007802 331 TFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKG 374 (589)
Q Consensus 331 riv~~GAGsAg~GiA~ll~~~~~~~~G~s~eeA~~~i~~vD~~G 374 (589)
+|||+|+|.||+..|..+.. .| .++.++|+..
T Consensus 1 ~vvIIGgG~aGl~aA~~l~~-----~~-------~~v~ii~~~~ 32 (201)
T PF07992_consen 1 DVVIIGGGPAGLSAALELAR-----PG-------AKVLIIEKSP 32 (201)
T ss_dssp EEEEESSSHHHHHHHHHHHH-----TT-------SEEEEESSSS
T ss_pred CEEEEecHHHHHHHHHHHhc-----CC-------CeEEEEeccc
Confidence 69999999999999999873 24 5688887643
No 188
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=77.93 E-value=20 Score=36.35 Aligned_cols=47 Identities=28% Similarity=0.400 Sum_probs=29.4
Q ss_pred HHHHHHHHHhCCCCCCceEEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEcc
Q 007802 314 AGILSALKLVGGTLADQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDS 372 (589)
Q Consensus 314 Agll~Alr~~g~~l~d~riv~~GAGsAg~GiA~ll~~~~~~~~G~s~eeA~~~i~~vD~ 372 (589)
+..+.|++..+. ..+++++|+|+|+.|...+.+. .+ .|. ++|+.+|+
T Consensus 107 ~ta~~al~~~~~-~~g~~VlV~G~G~vG~~~~~~a-k~----~G~------~~Vi~~~~ 153 (280)
T TIGR03366 107 ATVMAALEAAGD-LKGRRVLVVGAGMLGLTAAAAA-AA----AGA------ARVVAADP 153 (280)
T ss_pred HHHHHHHHhccC-CCCCEEEEECCCHHHHHHHHHH-HH----cCC------CEEEEECC
Confidence 334556655544 3788999999987765554433 22 364 56887764
No 189
>PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=77.75 E-value=43 Score=36.96 Aligned_cols=193 Identities=16% Similarity=0.183 Sum_probs=113.4
Q ss_pred cCCCceeccCC---CchHHHHHHHHHHHHHH------------------hCCCCCCceEEEeCcChHHHHHHHHHHHHHH
Q 007802 295 SSSHLVFNDDI---QGTASVVLAGILSALKL------------------VGGTLADQTFLFLGAGEAGTGIAELIALEMS 353 (589)
Q Consensus 295 r~~~~~FnDDi---QGTaaV~lAgll~Alr~------------------~g~~l~d~riv~~GAGsAg~GiA~ll~~~~~ 353 (589)
+..++++|--- +.+|=-+++.+|+.+|- .|..|.+.++.|+|-|..|..+|+.+...
T Consensus 96 ~~gI~V~n~pg~~~~aVAE~~i~l~L~~~R~~~~~~~~~~~g~w~~~~~~~~~L~gktvGIiG~G~IG~~vA~~~~~f-- 173 (409)
T PRK11790 96 KRGIPVFNAPFSNTRSVAELVIGEIILLLRGIPEKNAKAHRGGWNKSAAGSFEVRGKTLGIVGYGHIGTQLSVLAESL-- 173 (409)
T ss_pred hCCCEEEeCCCCChHHHHHHHHHHHHHHHcChHHHHHHHHcCcccccccCcccCCCCEEEEECCCHHHHHHHHHHHHC--
Confidence 35777777432 23455678888887763 24569999999999999999999988542
Q ss_pred hccCCCHHhhcCeEEEEcccCcccCCcccCCchhchhhhcccCCCCCHHHHHhccCCcEEEeecC----CCCCCCHHHHH
Q 007802 354 KQTKAPIEEARKKIWLVDSKGLIVSSRKESLQHFKKPWAHEHAPIKSLLDAVKAIKPTMLMGTSG----VGKTFTKEVVE 429 (589)
Q Consensus 354 ~~~G~s~eeA~~~i~~vD~~GLv~~~r~~~l~~~k~~fa~~~~~~~~L~e~V~~vkPtvLIG~S~----~~g~Fteevv~ 429 (589)
|+ +++.+|+.. + .... .+ ....+|.|+++. .|+++=.-- ..+.|+++.+.
T Consensus 174 ---Gm-------~V~~~d~~~-----~-~~~~-----~~---~~~~~l~ell~~--sDiVslh~Plt~~T~~li~~~~l~ 227 (409)
T PRK11790 174 ---GM-------RVYFYDIED-----K-LPLG-----NA---RQVGSLEELLAQ--SDVVSLHVPETPSTKNMIGAEELA 227 (409)
T ss_pred ---CC-------EEEEECCCc-----c-cccC-----Cc---eecCCHHHHHhh--CCEEEEcCCCChHHhhccCHHHHh
Confidence 65 577788631 0 0010 01 123479999986 888763211 12689999999
Q ss_pred HHHcCCCCcEEEecCCCCCCCCCCHHHHhc--cccCcEEEeeCCC-C--CcceeCCee-eCCCCccccccchhhhHHHHH
Q 007802 430 AMASFNEKPVIFALSNPTSQSECTAEEAYT--WSKGQAIFASGSP-F--DPVEYNGKV-FVPGQGNNAYIFPGLGLGLII 503 (589)
Q Consensus 430 ~Ma~~~erPIIFaLSNPt~~~E~t~eda~~--wT~GraifAsGSP-f--~pv~~~G~~-~~p~Q~NN~~iFPGiglG~~~ 503 (589)
.|. +.-++.-.|. .++--|+|+. ...|+ |.+.|.- | +|..-+... ..--+..|+++-|=+|-...-
T Consensus 228 ~mk---~ga~lIN~aR----G~~vde~aL~~aL~~g~-i~gaalDVf~~EP~~~~~~~~~pL~~~~nvilTPHia~~t~e 299 (409)
T PRK11790 228 LMK---PGAILINASR----GTVVDIDALADALKSGH-LAGAAIDVFPVEPKSNGDPFESPLRGLDNVILTPHIGGSTQE 299 (409)
T ss_pred cCC---CCeEEEECCC----CcccCHHHHHHHHHcCC-ceEEEEcCCCCCCCCccccccchhhcCCCEEECCcCCCCHHH
Confidence 995 4567776655 4444444431 13566 4433322 2 222111000 011245689999998844322
Q ss_pred hCCcccCHHHHHHHHHHHHhccCcc
Q 007802 504 SGAIRVRDEMLLAASEALAAQVTQE 528 (589)
Q Consensus 504 ~~a~~Itd~m~~aAA~aLA~~v~~~ 528 (589)
-...|...+++.+.......
T Consensus 300 -----a~~~~~~~~~~nl~~~~~~~ 319 (409)
T PRK11790 300 -----AQENIGLEVAGKLVKYSDNG 319 (409)
T ss_pred -----HHHHHHHHHHHHHHHHHcCC
Confidence 23445556666666665433
No 190
>PRK12490 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=77.67 E-value=12 Score=38.92 Aligned_cols=93 Identities=14% Similarity=0.175 Sum_probs=54.8
Q ss_pred eEEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEcccCcccCCcccCCchhchhhhcc-cCCCCCHHHHHhccC
Q 007802 331 TFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLIVSSRKESLQHFKKPWAHE-HAPIKSLLDAVKAIK 409 (589)
Q Consensus 331 riv~~GAGsAg~GiA~ll~~~~~~~~G~s~eeA~~~i~~vD~~GLv~~~r~~~l~~~k~~fa~~-~~~~~~L~e~V~~vk 409 (589)
||-|+|.|..|..+|+.+... |. +++++|++. ++ .. .++.. .....++.|+++..+
T Consensus 2 ~Ig~IGlG~mG~~mA~~L~~~-----g~-------~v~v~dr~~----~~---~~----~~~~~g~~~~~s~~~~~~~~~ 58 (299)
T PRK12490 2 KLGLIGLGKMGGNMAERLRED-----GH-------EVVGYDVNQ----EA---VD----VAGKLGITARHSLEELVSKLE 58 (299)
T ss_pred EEEEEcccHHHHHHHHHHHhC-----CC-------EEEEEECCH----HH---HH----HHHHCCCeecCCHHHHHHhCC
Confidence 689999999999999988652 53 477777641 11 11 12111 112357778777643
Q ss_pred -CcEEEeecCCCCCCCHHHHHHHHcC-CCCcEEEecCCCC
Q 007802 410 -PTMLMGTSGVGKTFTKEVVEAMASF-NEKPVIFALSNPT 447 (589)
Q Consensus 410 -PtvLIG~S~~~g~Fteevv~~Ma~~-~erPIIFaLSNPt 447 (589)
++++|= +.......++++..+... .+..+|.=+|+-.
T Consensus 59 ~advVi~-~vp~~~~~~~v~~~i~~~l~~g~ivid~st~~ 97 (299)
T PRK12490 59 APRTIWV-MVPAGEVTESVIKDLYPLLSPGDIVVDGGNSR 97 (299)
T ss_pred CCCEEEE-EecCchHHHHHHHHHhccCCCCCEEEECCCCC
Confidence 566652 232333566666655433 3567888887633
No 191
>PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional
Probab=77.47 E-value=23 Score=37.65 Aligned_cols=178 Identities=14% Similarity=0.100 Sum_probs=101.4
Q ss_pred chHHHHHHHHHHHHHHh----------------CCCCCCceEEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEE
Q 007802 307 GTASVVLAGILSALKLV----------------GGTLADQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLV 370 (589)
Q Consensus 307 GTaaV~lAgll~Alr~~----------------g~~l~d~riv~~GAGsAg~GiA~ll~~~~~~~~G~s~eeA~~~i~~v 370 (589)
..|--+++-+|+..|-. +..++++++.|+|.|..|..+|+.+... |+ +++.+
T Consensus 98 ~vAE~~l~~~L~~~r~~~~~~~~~~~~~w~~~~~~~l~g~tvgIvG~G~IG~~vA~~l~af-----G~-------~V~~~ 165 (312)
T PRK15469 98 QMQEYAVSQVLHWFRRFDDYQALQNSSHWQPLPEYHREDFTIGILGAGVLGSKVAQSLQTW-----GF-------PLRCW 165 (312)
T ss_pred HHHHHHHHHHHHHHcChHHHHHHHHhCCcCCCCCCCcCCCEEEEECCCHHHHHHHHHHHHC-----CC-------EEEEE
Confidence 34556666666665421 3468899999999999999999998753 65 46777
Q ss_pred cccCcccCCcccCCchhchhhhcccCCCCCHHHHHhccCCcEEEeecC----CCCCCCHHHHHHHHcCCCCcEEEecCCC
Q 007802 371 DSKGLIVSSRKESLQHFKKPWAHEHAPIKSLLDAVKAIKPTMLMGTSG----VGKTFTKEVVEAMASFNEKPVIFALSNP 446 (589)
Q Consensus 371 D~~GLv~~~r~~~l~~~k~~fa~~~~~~~~L~e~V~~vkPtvLIG~S~----~~g~Fteevv~~Ma~~~erPIIFaLSNP 446 (589)
|+.. .. .+... .+ ....+|.|+++. .|+++=+-. .-+.|+++.++.|. +..++.=.|.
T Consensus 166 ~~~~----~~---~~~~~-~~----~~~~~l~e~l~~--aDvvv~~lPlt~~T~~li~~~~l~~mk---~ga~lIN~aR- 227 (312)
T PRK15469 166 SRSR----KS---WPGVQ-SF----AGREELSAFLSQ--TRVLINLLPNTPETVGIINQQLLEQLP---DGAYLLNLAR- 227 (312)
T ss_pred eCCC----CC---CCCce-ee----cccccHHHHHhc--CCEEEECCCCCHHHHHHhHHHHHhcCC---CCcEEEECCC-
Confidence 7631 11 11111 11 123579999987 888873211 12578888888885 4556665554
Q ss_pred CCCCCCCHHHHh--ccccCcEEEeeCCCCCcceeCCeeeCCCCccccccchhhhHHHHHhCCcccCHHHHHHHHHHHHhc
Q 007802 447 TSQSECTAEEAY--TWSKGQAIFASGSPFDPVEYNGKVFVPGQGNNAYIFPGLGLGLIISGAIRVRDEMLLAASEALAAQ 524 (589)
Q Consensus 447 t~~~E~t~eda~--~wT~GraifAsGSPf~pv~~~G~~~~p~Q~NN~~iFPGiglG~~~~~a~~Itd~m~~aAA~aLA~~ 524 (589)
.++--|+|+ ....|+.-.|.--=|++--.... ..-=+..|+++-|=+|- .+. ...|+..+++-+-.+
T Consensus 228 ---G~vVde~aL~~aL~~g~i~gaalDVf~~EPl~~~-~pl~~~~nvi~TPHiag------~t~-~~~~~~~~~~n~~~~ 296 (312)
T PRK15469 228 ---GVHVVEDDLLAALDSGKVKGAMLDVFSREPLPPE-SPLWQHPRVAITPHVAA------VTR-PAEAVEYISRTIAQL 296 (312)
T ss_pred ---ccccCHHHHHHHHhcCCeeeEEecCCCCCCCCCC-ChhhcCCCeEECCcCCC------CcC-HHHHHHHHHHHHHHH
Confidence 666666555 22466654443322321111000 00124568888887763 221 234555555555444
Q ss_pred c
Q 007802 525 V 525 (589)
Q Consensus 525 v 525 (589)
.
T Consensus 297 ~ 297 (312)
T PRK15469 297 E 297 (312)
T ss_pred H
Confidence 4
No 192
>PRK05442 malate dehydrogenase; Provisional
Probab=77.40 E-value=15 Score=39.40 Aligned_cols=110 Identities=13% Similarity=0.072 Sum_probs=64.9
Q ss_pred eEEEeCc-ChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEcccCcc--cCCcccCCchhchhhhcccCCCCCHHHHHhc
Q 007802 331 TFLFLGA-GEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLI--VSSRKESLQHFKKPWAHEHAPIKSLLDAVKA 407 (589)
Q Consensus 331 riv~~GA-GsAg~GiA~ll~~~~~~~~G~s~eeA~~~i~~vD~~GLv--~~~r~~~l~~~k~~fa~~~~~~~~L~e~V~~ 407 (589)
||.|+|| |..|..+|-.|+.. |+-...-...|.|+|.+.-. .++..-+|.+...++-+...-..+..+.+++
T Consensus 6 KV~IiGaaG~VG~~~a~~l~~~-----~~~~~~~~~el~LiDi~~~~~~~~g~a~Dl~~~~~~~~~~~~i~~~~y~~~~d 80 (326)
T PRK05442 6 RVAVTGAAGQIGYSLLFRIASG-----DMLGKDQPVILQLLEIPPALKALEGVVMELDDCAFPLLAGVVITDDPNVAFKD 80 (326)
T ss_pred EEEEECCCcHHHHHHHHHHHhh-----hhcCCCCccEEEEEecCCcccccceeehhhhhhhhhhcCCcEEecChHHHhCC
Confidence 8999998 99999998877653 33100001279999985311 1111112433332332211111355677776
Q ss_pred cCCcEEEeecCC---CCC-----------CCHHHHHHHHcCC-CCcEEEecCCCC
Q 007802 408 IKPTMLMGTSGV---GKT-----------FTKEVVEAMASFN-EKPVIFALSNPT 447 (589)
Q Consensus 408 vkPtvLIG~S~~---~g~-----------Fteevv~~Ma~~~-erPIIFaLSNPt 447 (589)
.|++|=+.+. +|- .=+++.+.+.+++ ...||+-.|||.
T Consensus 81 --aDiVVitaG~~~k~g~tR~dll~~Na~i~~~i~~~i~~~~~~~~iiivvsNPv 133 (326)
T PRK05442 81 --ADVALLVGARPRGPGMERKDLLEANGAIFTAQGKALNEVAARDVKVLVVGNPA 133 (326)
T ss_pred --CCEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEeCCch
Confidence 8888755543 331 1245677888866 699999999997
No 193
>PRK08410 2-hydroxyacid dehydrogenase; Provisional
Probab=77.31 E-value=27 Score=37.01 Aligned_cols=135 Identities=14% Similarity=0.196 Sum_probs=87.4
Q ss_pred CCCceeccC---CCchHHHHHHHHHHHHHHh------------------------CCCCCCceEEEeCcChHHHHHHHHH
Q 007802 296 SSHLVFNDD---IQGTASVVLAGILSALKLV------------------------GGTLADQTFLFLGAGEAGTGIAELI 348 (589)
Q Consensus 296 ~~~~~FnDD---iQGTaaV~lAgll~Alr~~------------------------g~~l~d~riv~~GAGsAg~GiA~ll 348 (589)
..+.+.|-- -..+|=-+++-+|+..|-. +..|.++++.|+|-|..|-.+|+++
T Consensus 85 ~gI~v~n~~g~~~~~VAE~a~~l~L~~~R~~~~~~~~~~~g~w~~~~~~~~~~~~~~~L~gktvGIiG~G~IG~~vA~~~ 164 (311)
T PRK08410 85 KGIAVKNVAGYSTESVAQHTFAMLLSLLGRINYYDRYVKSGEYSESPIFTHISRPLGEIKGKKWGIIGLGTIGKRVAKIA 164 (311)
T ss_pred CCCEEEcCCCCCChHHHHHHHHHHHHHHhCHHHHHHHHHcCCCCcCCCccccCccccccCCCEEEEECCCHHHHHHHHHH
Confidence 455555532 1335556777777766632 2468999999999999999999988
Q ss_pred HHHHHhccCCCHHhhcCeEEEEcccCcccCCcccCCchhchhhhcccCCCCCHHHHHhccCCcEEEee----cCCCCCCC
Q 007802 349 ALEMSKQTKAPIEEARKKIWLVDSKGLIVSSRKESLQHFKKPWAHEHAPIKSLLDAVKAIKPTMLMGT----SGVGKTFT 424 (589)
Q Consensus 349 ~~~~~~~~G~s~eeA~~~i~~vD~~GLv~~~r~~~l~~~k~~fa~~~~~~~~L~e~V~~vkPtvLIG~----S~~~g~Ft 424 (589)
.. | |+ +|+.+|+.+- .. + . .| ...+|.|+++. .|+++=. ...-+.|+
T Consensus 165 ~~-f----gm-------~V~~~d~~~~---~~-~----~--~~-----~~~~l~ell~~--sDvv~lh~Plt~~T~~li~ 215 (311)
T PRK08410 165 QA-F----GA-------KVVYYSTSGK---NK-N----E--EY-----ERVSLEELLKT--SDIISIHAPLNEKTKNLIA 215 (311)
T ss_pred hh-c----CC-------EEEEECCCcc---cc-c----c--Cc-----eeecHHHHhhc--CCEEEEeCCCCchhhcccC
Confidence 53 3 64 5888888531 00 0 0 11 12479999986 8888733 12237999
Q ss_pred HHHHHHHHcCCCCcEEEecCCCCCCCCCCHHHHhcc--ccCcEE
Q 007802 425 KEVVEAMASFNEKPVIFALSNPTSQSECTAEEAYTW--SKGQAI 466 (589)
Q Consensus 425 eevv~~Ma~~~erPIIFaLSNPt~~~E~t~eda~~w--T~Grai 466 (589)
++.++.|. +..++.=.|. .++-=|+|+.. ..|+.-
T Consensus 216 ~~~~~~Mk---~~a~lIN~aR----G~vVDe~AL~~AL~~g~i~ 252 (311)
T PRK08410 216 YKELKLLK---DGAILINVGR----GGIVNEKDLAKALDEKDIY 252 (311)
T ss_pred HHHHHhCC---CCeEEEECCC----ccccCHHHHHHHHHcCCeE
Confidence 99999995 5667775554 55555554432 367654
No 194
>PLN02616 tetrahydrofolate dehydrogenase/cyclohydrolase, putative
Probab=76.90 E-value=9.8 Score=41.70 Aligned_cols=84 Identities=13% Similarity=0.209 Sum_probs=65.2
Q ss_pred hHHHHHHHHHHHHHHhCCCCCCceEEEeCcCh-HHHHHHHHHHHHHHhccCCCHHhhcCeEEEEcccCcccCCcccCCch
Q 007802 308 TASVVLAGILSALKLVGGTLADQTFLFLGAGE-AGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLIVSSRKESLQH 386 (589)
Q Consensus 308 TaaV~lAgll~Alr~~g~~l~d~riv~~GAGs-Ag~GiA~ll~~~~~~~~G~s~eeA~~~i~~vD~~GLv~~~r~~~l~~ 386 (589)
-.-+|-.|++.-|+..+.+|+++++|++|-+. .|.-+|.||.. .|. .+.+|.++
T Consensus 210 f~PCTp~avielL~~y~i~l~GK~vvVIGRS~iVGkPLa~LL~~-----~~A-------TVTicHs~------------- 264 (364)
T PLN02616 210 FVPCTPKGCIELLHRYNVEIKGKRAVVIGRSNIVGMPAALLLQR-----EDA-------TVSIVHSR------------- 264 (364)
T ss_pred CCCCCHHHHHHHHHHhCCCCCCCEEEEECCCccccHHHHHHHHH-----CCC-------eEEEeCCC-------------
Confidence 34567778888999999999999999999754 67777777754 242 35555442
Q ss_pred hchhhhcccCCCCCHHHHHhccCCcEEEeecCCCCCCCHHHHH
Q 007802 387 FKKPWAHEHAPIKSLLDAVKAIKPTMLMGTSGVGKTFTKEVVE 429 (589)
Q Consensus 387 ~k~~fa~~~~~~~~L~e~V~~vkPtvLIG~S~~~g~Fteevv~ 429 (589)
.++|.+.+++ +|++|-..+.++.++.++|+
T Consensus 265 -----------T~nl~~~~r~--ADIVIsAvGkp~~i~~d~vK 294 (364)
T PLN02616 265 -----------TKNPEEITRE--ADIIISAVGQPNMVRGSWIK 294 (364)
T ss_pred -----------CCCHHHHHhh--CCEEEEcCCCcCcCCHHHcC
Confidence 1468888886 99999999999999999997
No 195
>PLN03139 formate dehydrogenase; Provisional
Probab=76.87 E-value=24 Score=38.92 Aligned_cols=142 Identities=16% Similarity=0.075 Sum_probs=84.5
Q ss_pred CCCCCCceEEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEcccCcccCCcccCCchhchhhhcccCCCCCHHH
Q 007802 324 GGTLADQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLIVSSRKESLQHFKKPWAHEHAPIKSLLD 403 (589)
Q Consensus 324 g~~l~d~riv~~GAGsAg~GiA~ll~~~~~~~~G~s~eeA~~~i~~vD~~GLv~~~r~~~l~~~k~~fa~~~~~~~~L~e 403 (589)
+..|.+.+|.|+|.|..|..+|+.+... |+ +++.+|+...-. + . .+ .+ ......+|.|
T Consensus 194 ~~~L~gktVGIVG~G~IG~~vA~~L~af-----G~-------~V~~~d~~~~~~----~-~--~~-~~--g~~~~~~l~e 251 (386)
T PLN03139 194 AYDLEGKTVGTVGAGRIGRLLLQRLKPF-----NC-------NLLYHDRLKMDP----E-L--EK-ET--GAKFEEDLDA 251 (386)
T ss_pred CcCCCCCEEEEEeecHHHHHHHHHHHHC-----CC-------EEEEECCCCcch----h-h--Hh-hc--CceecCCHHH
Confidence 4569999999999999999999999642 64 477788753200 0 0 00 00 0011247999
Q ss_pred HHhccCCcEEEeecC----CCCCCCHHHHHHHHcCCCCcEEEecCCCCCCCCCCHHHHhc-c-ccCcEEEeeCCCCCcce
Q 007802 404 AVKAIKPTMLMGTSG----VGKTFTKEVVEAMASFNEKPVIFALSNPTSQSECTAEEAYT-W-SKGQAIFASGSPFDPVE 477 (589)
Q Consensus 404 ~V~~vkPtvLIG~S~----~~g~Fteevv~~Ma~~~erPIIFaLSNPt~~~E~t~eda~~-w-T~GraifAsGSPf~pv~ 477 (589)
+++. .|+++=..- .-++|+++.+..|. +.-+++=.|. .++--|+|+. . ..|+.-.|..-=|.+--
T Consensus 252 ll~~--sDvV~l~lPlt~~T~~li~~~~l~~mk---~ga~lIN~aR----G~iVDe~AL~~AL~sG~l~GAaLDV~~~EP 322 (386)
T PLN03139 252 MLPK--CDVVVINTPLTEKTRGMFNKERIAKMK---KGVLIVNNAR----GAIMDTQAVADACSSGHIGGYGGDVWYPQP 322 (386)
T ss_pred HHhh--CCEEEEeCCCCHHHHHHhCHHHHhhCC---CCeEEEECCC----CchhhHHHHHHHHHcCCceEEEEcCCCCCC
Confidence 9976 888773321 12689999999995 4557765554 4555444432 2 36776666554332211
Q ss_pred e-CCeeeCCCCccccccchhhh
Q 007802 478 Y-NGKVFVPGQGNNAYIFPGLG 498 (589)
Q Consensus 478 ~-~G~~~~p~Q~NN~~iFPGig 498 (589)
. ... .--+..|..+-|=++
T Consensus 323 lp~d~--pL~~~pNvilTPHia 342 (386)
T PLN03139 323 APKDH--PWRYMPNHAMTPHIS 342 (386)
T ss_pred CCCCC--hhhcCCCeEEccccc
Confidence 1 000 011335888888776
No 196
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=76.73 E-value=7.2 Score=43.77 Aligned_cols=86 Identities=16% Similarity=0.108 Sum_probs=60.8
Q ss_pred HHHHHHHHhcCCceeeEeecCCCccHHHHHHHHcC-CCc--eeccCCCchHHHHHHHHHHHHHHh--------CCCCCCc
Q 007802 262 EFMTAVKQNYGEKVLIQFEDFANHNAFELLSKYSS-SHL--VFNDDIQGTASVVLAGILSALKLV--------GGTLADQ 330 (589)
Q Consensus 262 efv~av~~~fGp~~lIq~EDf~~~~Af~iL~ryr~-~~~--~FnDDiQGTaaV~lAgll~Alr~~--------g~~l~d~ 330 (589)
+.+..+.... |+ |..|=+....-.++.++|.- .+| .+|++..+.|....+-+++.++.. ...-.+.
T Consensus 137 ~~~~~~a~~~-p~--i~~~~id~~~~~~~~~~~~v~~VP~~~i~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 213 (515)
T TIGR03140 137 QALNQMALLN-PN--ISHTMIDGALFQDEVEALGIQGVPAVFLNGEEFHNGRMDLAELLEKLEETAGVEAASALEQLDPY 213 (515)
T ss_pred HHHHHHHHhC-CC--ceEEEEEchhCHHHHHhcCCcccCEEEECCcEEEecCCCHHHHHHHHhhccCcccchhccccCCC
Confidence 3334444444 54 44555666777888999974 444 358888888888888888887654 1224467
Q ss_pred eEEEeCcChHHHHHHHHHHH
Q 007802 331 TFLFLGAGEAGTGIAELIAL 350 (589)
Q Consensus 331 riv~~GAGsAg~GiA~ll~~ 350 (589)
++||+|||+||+..|..+..
T Consensus 214 dVvIIGgGpAGl~AA~~la~ 233 (515)
T TIGR03140 214 DVLVVGGGPAGAAAAIYAAR 233 (515)
T ss_pred CEEEECCCHHHHHHHHHHHH
Confidence 89999999999999987755
No 197
>PRK07680 late competence protein ComER; Validated
Probab=76.63 E-value=11 Score=38.54 Aligned_cols=98 Identities=13% Similarity=0.232 Sum_probs=58.9
Q ss_pred eEEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEcccCcccCCcccCCchhchhhhcccCCCCCHHHHHhccCC
Q 007802 331 TFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLIVSSRKESLQHFKKPWAHEHAPIKSLLDAVKAIKP 410 (589)
Q Consensus 331 riv~~GAGsAg~GiA~ll~~~~~~~~G~s~eeA~~~i~~vD~~GLv~~~r~~~l~~~k~~fa~~~~~~~~L~e~V~~vkP 410 (589)
+|.|+|+|..|..+|..+... |.- ...+++++|++ . +........|. ......+..|+++. +
T Consensus 2 ~I~iIG~G~mG~ala~~L~~~-----g~~---~~~~v~v~~r~----~---~~~~~~~~~~~-g~~~~~~~~~~~~~--a 63 (273)
T PRK07680 2 NIGFIGTGNMGTILIEAFLES-----GAV---KPSQLTITNRT----P---AKAYHIKERYP-GIHVAKTIEEVISQ--S 63 (273)
T ss_pred EEEEECccHHHHHHHHHHHHC-----CCC---CcceEEEECCC----H---HHHHHHHHHcC-CeEEECCHHHHHHh--C
Confidence 689999999999999888653 420 12467877764 1 11111111110 00112467777764 7
Q ss_pred cEEEeecCCCCCCCHHHHHHHHcCC-CCcEEEecCCCCC
Q 007802 411 TMLMGTSGVGKTFTKEVVEAMASFN-EKPVIFALSNPTS 448 (589)
Q Consensus 411 tvLIG~S~~~g~Fteevv~~Ma~~~-erPIIFaLSNPt~ 448 (589)
|++| ++..+ ...+++++.++.+- +..+|..++|+.+
T Consensus 64 DiVi-lav~p-~~~~~vl~~l~~~l~~~~~iis~~ag~~ 100 (273)
T PRK07680 64 DLIF-ICVKP-LDIYPLLQKLAPHLTDEHCLVSITSPIS 100 (273)
T ss_pred CEEE-EecCH-HHHHHHHHHHHhhcCCCCEEEEECCCCC
Confidence 8776 33333 34678888887543 4568889998763
No 198
>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]. In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....
Probab=76.23 E-value=5.2 Score=36.56 Aligned_cols=95 Identities=15% Similarity=0.140 Sum_probs=49.7
Q ss_pred eEEEeCc-ChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEcccCcccCCcccCCchhchhhhcccCCCCCHHHHHhccC
Q 007802 331 TFLFLGA-GEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLIVSSRKESLQHFKKPWAHEHAPIKSLLDAVKAIK 409 (589)
Q Consensus 331 riv~~GA-GsAg~GiA~ll~~~~~~~~G~s~eeA~~~i~~vD~~GLv~~~r~~~l~~~k~~fa~~~~~~~~L~e~V~~vk 409 (589)
||+++|+ |-.|-.|++.+.+. .|+ +=...+|++.=-..+. ++.+.-......-+-..+|.++++.
T Consensus 2 rV~i~G~~GrMG~~i~~~i~~~----~~~------~lv~~v~~~~~~~~g~--d~g~~~~~~~~~~~v~~~l~~~~~~-- 67 (124)
T PF01113_consen 2 RVGIVGASGRMGRAIAEAILES----PGF------ELVGAVDRKPSAKVGK--DVGELAGIGPLGVPVTDDLEELLEE-- 67 (124)
T ss_dssp EEEEETTTSHHHHHHHHHHHHS----TTE------EEEEEEETTTSTTTTS--BCHHHCTSST-SSBEBS-HHHHTTH--
T ss_pred EEEEECCCCHHHHHHHHHHHhc----CCc------EEEEEEecCCcccccc--hhhhhhCcCCcccccchhHHHhccc--
Confidence 8999999 99999999988662 344 4467788876111111 1111110000000112567777776
Q ss_pred CcEEEeecCCCCCCCHHHHHHHHcCCCCcEEEe
Q 007802 410 PTMLMGTSGVGKTFTKEVVEAMASFNEKPVIFA 442 (589)
Q Consensus 410 PtvLIG~S~~~g~Fteevv~~Ma~~~erPIIFa 442 (589)
+||+|=.|... -..+.++...++ ..|+|..
T Consensus 68 ~DVvIDfT~p~--~~~~~~~~~~~~-g~~~ViG 97 (124)
T PF01113_consen 68 ADVVIDFTNPD--AVYDNLEYALKH-GVPLVIG 97 (124)
T ss_dssp -SEEEEES-HH--HHHHHHHHHHHH-T-EEEEE
T ss_pred CCEEEEcCChH--HhHHHHHHHHhC-CCCEEEE
Confidence 77777777432 344455555444 4555554
No 199
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=76.05 E-value=41 Score=35.14 Aligned_cols=46 Identities=22% Similarity=0.276 Sum_probs=28.9
Q ss_pred HHHHHHHhCCCCCCceEEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEccc
Q 007802 316 ILSALKLVGGTLADQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSK 373 (589)
Q Consensus 316 ll~Alr~~g~~l~d~riv~~GAGsAg~GiA~ll~~~~~~~~G~s~eeA~~~i~~vD~~ 373 (589)
.+.|++..+. ..+++++|.|+|+.|...+.+.. + .|. ++++.+|+.
T Consensus 158 a~~al~~~~~-~~g~~VlV~G~G~vG~~aiqlak-~----~G~------~~Vi~~~~~ 203 (343)
T PRK09880 158 AIHAAHQAGD-LQGKRVFVSGVGPIGCLIVAAVK-T----LGA------AEIVCADVS 203 (343)
T ss_pred HHHHHHhcCC-CCCCEEEEECCCHHHHHHHHHHH-H----cCC------cEEEEEeCC
Confidence 3555554433 36899999999977766654332 2 363 567777653
No 200
>KOG2337 consensus Ubiquitin activating E1 enzyme-like protein [Coenzyme transport and metabolism]
Probab=76.04 E-value=2.3 Score=48.36 Aligned_cols=38 Identities=26% Similarity=0.388 Sum_probs=32.5
Q ss_pred CCCceEEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEcccCc
Q 007802 327 LADQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGL 375 (589)
Q Consensus 327 l~d~riv~~GAGsAg~GiA~ll~~~~~~~~G~s~eeA~~~i~~vD~~GL 375 (589)
++..|.+++|||+-||+||+-|+.+ |+ ++|.|||.--.
T Consensus 338 is~~KcLLLGAGTLGC~VAR~Ll~W-----Gv------RhITFvDn~kV 375 (669)
T KOG2337|consen 338 ISQTKCLLLGAGTLGCNVARNLLGW-----GV------RHITFVDNGKV 375 (669)
T ss_pred hhcceeEEecCcccchHHHHHHHhh-----cc------ceEEEEecCee
Confidence 4578999999999999999999887 65 78999997533
No 201
>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC. This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.
Probab=75.94 E-value=23 Score=40.19 Aligned_cols=36 Identities=22% Similarity=0.024 Sum_probs=29.4
Q ss_pred CCCCccccccchhhhHHHHHhCCcccCHHHHHHHHH
Q 007802 484 VPGQGNNAYIFPGLGLGLIISGAIRVRDEMLLAASE 519 (589)
Q Consensus 484 ~p~Q~NN~~iFPGiglG~~~~~a~~Itd~m~~aAA~ 519 (589)
.||..+|-+.+|.+.-+..+...--++.+.+.++.+
T Consensus 186 ~pGfi~Nrl~~~~~~EA~~l~e~g~a~~~~ID~al~ 221 (503)
T TIGR02279 186 TPGFIVNRVARPYYAEALRALEEQVAAPAVLDAALR 221 (503)
T ss_pred CCCcHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 578899999999999898888877788887776654
No 202
>PRK14173 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=75.63 E-value=15 Score=38.97 Aligned_cols=84 Identities=25% Similarity=0.320 Sum_probs=65.8
Q ss_pred hHHHHHHHHHHHHHHhCCCCCCceEEEeCcC-hHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEcccCcccCCcccCCch
Q 007802 308 TASVVLAGILSALKLVGGTLADQTFLFLGAG-EAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLIVSSRKESLQH 386 (589)
Q Consensus 308 TaaV~lAgll~Alr~~g~~l~d~riv~~GAG-sAg~GiA~ll~~~~~~~~G~s~eeA~~~i~~vD~~GLv~~~r~~~l~~ 386 (589)
-.-+|-.|++.=++-.|.+++++++|++|.+ ..|.-+|.||.. .|. .+.+|.++
T Consensus 134 ~~PcTp~avi~lL~~~~i~l~Gk~vvViGrS~iVGkPla~lL~~-----~~a-------TVtichs~------------- 188 (287)
T PRK14173 134 LEPCTPAGVVRLLKHYGIPLAGKEVVVVGRSNIVGKPLAALLLR-----EDA-------TVTLAHSK------------- 188 (287)
T ss_pred CCCCCHHHHHHHHHHcCCCCCCCEEEEECCCCccHHHHHHHHHH-----CCC-------EEEEeCCC-------------
Confidence 3466788888889999999999999999975 568888887753 242 35555542
Q ss_pred hchhhhcccCCCCCHHHHHhccCCcEEEeecCCCCCCCHHHHH
Q 007802 387 FKKPWAHEHAPIKSLLDAVKAIKPTMLMGTSGVGKTFTKEVVE 429 (589)
Q Consensus 387 ~k~~fa~~~~~~~~L~e~V~~vkPtvLIG~S~~~g~Fteevv~ 429 (589)
.++|.+.+++ +|++|-..+.++.+++++|+
T Consensus 189 -----------T~~l~~~~~~--ADIvIsAvGkp~~i~~~~vk 218 (287)
T PRK14173 189 -----------TQDLPAVTRR--ADVLVVAVGRPHLITPEMVR 218 (287)
T ss_pred -----------CCCHHHHHhh--CCEEEEecCCcCccCHHHcC
Confidence 1257888886 99999999999999999997
No 203
>PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=75.59 E-value=49 Score=37.69 Aligned_cols=195 Identities=16% Similarity=0.123 Sum_probs=111.4
Q ss_pred CCCceeccCC---CchHHHHHHHHHHHHHH------------------hCCCCCCceEEEeCcChHHHHHHHHHHHHHHh
Q 007802 296 SSHLVFNDDI---QGTASVVLAGILSALKL------------------VGGTLADQTFLFLGAGEAGTGIAELIALEMSK 354 (589)
Q Consensus 296 ~~~~~FnDDi---QGTaaV~lAgll~Alr~------------------~g~~l~d~riv~~GAGsAg~GiA~ll~~~~~~ 354 (589)
..+++.|-.- +-+|=-+++-+|+..|- .|..|.++++.|+|.|..|..+|+.+...
T Consensus 86 ~gI~V~n~p~~~~~~vAE~~l~l~L~~~R~~~~~~~~~~~g~W~~~~~~g~~l~gktvgIiG~G~IG~~vA~~l~~f--- 162 (526)
T PRK13581 86 RGIIVVNAPTGNTISAAEHTIALMLALARNIPQAHASLKAGKWERKKFMGVELYGKTLGIIGLGRIGSEVAKRAKAF--- 162 (526)
T ss_pred CCCEEEeCCCCChHHHHHHHHHHHHHHHcCHHHHHHHHHcCCCCccCccccccCCCEEEEECCCHHHHHHHHHHHhC---
Confidence 3555555321 23455567777777653 24568999999999999999999998643
Q ss_pred ccCCCHHhhcCeEEEEcccCcccCCcccCCchhchhhhcccCCCCCHHHHHhccCCcEEEeecC----CCCCCCHHHHHH
Q 007802 355 QTKAPIEEARKKIWLVDSKGLIVSSRKESLQHFKKPWAHEHAPIKSLLDAVKAIKPTMLMGTSG----VGKTFTKEVVEA 430 (589)
Q Consensus 355 ~~G~s~eeA~~~i~~vD~~GLv~~~r~~~l~~~k~~fa~~~~~~~~L~e~V~~vkPtvLIG~S~----~~g~Fteevv~~ 430 (589)
|+ +++.+|+.. ...+ .. .+ .-...+|.|+++. .|+++=.-. .-+.|+++.+..
T Consensus 163 --G~-------~V~~~d~~~--~~~~---~~----~~---g~~~~~l~ell~~--aDiV~l~lP~t~~t~~li~~~~l~~ 219 (526)
T PRK13581 163 --GM-------KVIAYDPYI--SPER---AA----QL---GVELVSLDELLAR--ADFITLHTPLTPETRGLIGAEELAK 219 (526)
T ss_pred --CC-------EEEEECCCC--ChhH---HH----hc---CCEEEcHHHHHhh--CCEEEEccCCChHhhcCcCHHHHhc
Confidence 64 588888742 1110 00 00 0111279999886 788764321 236899999999
Q ss_pred HHcCCCCcEEEecCCCCCCCCCCHHHHhccccCcEEEeeCCCCCcceeCCeeeCCCCccccccchhhhHHHHHhCCcccC
Q 007802 431 MASFNEKPVIFALSNPTSQSECTAEEAYTWSKGQAIFASGSPFDPVEYNGKVFVPGQGNNAYIFPGLGLGLIISGAIRVR 510 (589)
Q Consensus 431 Ma~~~erPIIFaLSNPt~~~E~t~eda~~wT~GraifAsGSPf~pv~~~G~~~~p~Q~NN~~iFPGiglG~~~~~a~~It 510 (589)
|. +..++.=.|.-.---|..--+|++ .|+.-.|.=-=|++--..+.. -=+..|+.+-|=+|-...- -.
T Consensus 220 mk---~ga~lIN~aRG~~vde~aL~~aL~--~g~i~gAaLDVf~~EP~~~~p--L~~~~nvilTPHia~~t~e-----~~ 287 (526)
T PRK13581 220 MK---PGVRIINCARGGIIDEAALAEALK--SGKVAGAALDVFEKEPPTDSP--LFELPNVVVTPHLGASTAE-----AQ 287 (526)
T ss_pred CC---CCeEEEECCCCceeCHHHHHHHHh--cCCeeEEEEecCCCCCCCCch--hhcCCCeeEcCccccchHH-----HH
Confidence 95 567777776644333333334443 566543321111100000111 1234588999988743322 23
Q ss_pred HHHHHHHHHHHHhccCcc
Q 007802 511 DEMLLAASEALAAQVTQE 528 (589)
Q Consensus 511 d~m~~aAA~aLA~~v~~~ 528 (589)
..|...+++.+......+
T Consensus 288 ~~~~~~~~~ni~~~~~g~ 305 (526)
T PRK13581 288 ENVAIQVAEQVIDALRGG 305 (526)
T ss_pred HHHHHHHHHHHHHHHcCC
Confidence 455566666666665543
No 204
>PRK14167 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=75.29 E-value=13 Score=39.76 Aligned_cols=87 Identities=14% Similarity=0.245 Sum_probs=64.8
Q ss_pred HHHHHHHHHHHHHHhCCCCCCceEEEeCcCh-HHHHHHHHHHHHHHhccCCCHHhhcCeEEEEcccCcccCCcccCCchh
Q 007802 309 ASVVLAGILSALKLVGGTLADQTFLFLGAGE-AGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLIVSSRKESLQHF 387 (589)
Q Consensus 309 aaV~lAgll~Alr~~g~~l~d~riv~~GAGs-Ag~GiA~ll~~~~~~~~G~s~eeA~~~i~~vD~~GLv~~~r~~~l~~~ 387 (589)
.-+|-.|++.=++-.+.+|++++++++|.+. -|.-+|.||... |... ...+.+|.++
T Consensus 137 ~PcTp~avi~lL~~~~i~l~Gk~vvViGrS~iVGkPla~lL~~~-----~~~~---~aTVtvchs~-------------- 194 (297)
T PRK14167 137 KPCTPHGIQKLLAAAGVDTEGADVVVVGRSDIVGKPMANLLIQK-----ADGG---NATVTVCHSR-------------- 194 (297)
T ss_pred CCCCHHHHHHHHHHhCCCCCCCEEEEECCCcccHHHHHHHHhcC-----ccCC---CCEEEEeCCC--------------
Confidence 4567888899999999999999999999764 677788777531 1100 0124444432
Q ss_pred chhhhcccCCCCCHHHHHhccCCcEEEeecCCCCCCCHHHHH
Q 007802 388 KKPWAHEHAPIKSLLDAVKAIKPTMLMGTSGVGKTFTKEVVE 429 (589)
Q Consensus 388 k~~fa~~~~~~~~L~e~V~~vkPtvLIG~S~~~g~Fteevv~ 429 (589)
.++|.+.+++ +|++|-..|.++.++.++|+
T Consensus 195 ----------T~~l~~~~~~--ADIvIsAvGkp~~i~~~~ik 224 (297)
T PRK14167 195 ----------TDDLAAKTRR--ADIVVAAAGVPELIDGSMLS 224 (297)
T ss_pred ----------CCCHHHHHhh--CCEEEEccCCcCccCHHHcC
Confidence 1358888886 99999999999999999997
No 205
>PRK06141 ornithine cyclodeaminase; Validated
Probab=75.29 E-value=27 Score=36.94 Aligned_cols=105 Identities=12% Similarity=0.133 Sum_probs=63.2
Q ss_pred CCCceEEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEcccCcccCCcccCCchhchhhhccc---CCCCCHHH
Q 007802 327 LADQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLIVSSRKESLQHFKKPWAHEH---APIKSLLD 403 (589)
Q Consensus 327 l~d~riv~~GAGsAg~GiA~ll~~~~~~~~G~s~eeA~~~i~~vD~~GLv~~~r~~~l~~~k~~fa~~~---~~~~~L~e 403 (589)
....+++|+|+|..|..++..+... .+. ++|+++|+. .++ ...+...+.+.. ....++.+
T Consensus 123 ~~~~~v~iiG~G~~a~~~~~al~~~----~~~------~~V~V~~Rs----~~~---a~~~a~~~~~~g~~~~~~~~~~~ 185 (314)
T PRK06141 123 KDASRLLVVGTGRLASLLALAHASV----RPI------KQVRVWGRD----PAK---AEALAAELRAQGFDAEVVTDLEA 185 (314)
T ss_pred CCCceEEEECCcHHHHHHHHHHHhc----CCC------CEEEEEcCC----HHH---HHHHHHHHHhcCCceEEeCCHHH
Confidence 3578999999999999998866542 132 678888764 111 223333332211 12367889
Q ss_pred HHhccCCcEEEeecCCC-CCCCHHHHHHHHcCCCCcEEEec-CCCCCCCCCCHHH
Q 007802 404 AVKAIKPTMLMGTSGVG-KTFTKEVVEAMASFNEKPVIFAL-SNPTSQSECTAEE 456 (589)
Q Consensus 404 ~V~~vkPtvLIG~S~~~-g~Fteevv~~Ma~~~erPIIFaL-SNPt~~~E~t~ed 456 (589)
++++ .|++|-+++.+ .+|+.+.++ +.-.|-+. |++..+-|+.++-
T Consensus 186 av~~--aDIVi~aT~s~~pvl~~~~l~------~g~~i~~ig~~~~~~~El~~~~ 232 (314)
T PRK06141 186 AVRQ--ADIISCATLSTEPLVRGEWLK------PGTHLDLVGNFTPDMRECDDEA 232 (314)
T ss_pred HHhc--CCEEEEeeCCCCCEecHHHcC------CCCEEEeeCCCCcccccCCHHH
Confidence 9975 99998766543 246665543 12244433 4566677888753
No 206
>PRK14180 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=75.26 E-value=15 Score=38.85 Aligned_cols=86 Identities=19% Similarity=0.229 Sum_probs=66.8
Q ss_pred CchHHHHHHHHHHHHHHhCCCCCCceEEEeCcC-hHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEcccCcccCCcccCC
Q 007802 306 QGTASVVLAGILSALKLVGGTLADQTFLFLGAG-EAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLIVSSRKESL 384 (589)
Q Consensus 306 QGTaaV~lAgll~Alr~~g~~l~d~riv~~GAG-sAg~GiA~ll~~~~~~~~G~s~eeA~~~i~~vD~~GLv~~~r~~~l 384 (589)
.+-.-+|-.|++.=++-.|.+|++.++|++|.+ ..|.-+|.||.. .|. .+.+|+++
T Consensus 135 ~~~~PcTp~aii~lL~~y~i~l~Gk~vvViGrS~~VGkPla~lL~~-----~~A-------TVt~chs~----------- 191 (282)
T PRK14180 135 KCLESCTPKGIMTMLREYGIKTEGAYAVVVGASNVVGKPVSQLLLN-----AKA-------TVTTCHRF----------- 191 (282)
T ss_pred CCcCCCCHHHHHHHHHHhCCCCCCCEEEEECCCCcchHHHHHHHHH-----CCC-------EEEEEcCC-----------
Confidence 344677888999999999999999999999976 468888887753 242 35555543
Q ss_pred chhchhhhcccCCCCCHHHHHhccCCcEEEeecCCCCCCCHHHHH
Q 007802 385 QHFKKPWAHEHAPIKSLLDAVKAIKPTMLMGTSGVGKTFTKEVVE 429 (589)
Q Consensus 385 ~~~k~~fa~~~~~~~~L~e~V~~vkPtvLIG~S~~~g~Fteevv~ 429 (589)
.++|.+.+++ +|++|-..+.++.|++++|+
T Consensus 192 -------------T~dl~~~~k~--ADIvIsAvGkp~~i~~~~vk 221 (282)
T PRK14180 192 -------------TTDLKSHTTK--ADILIVAVGKPNFITADMVK 221 (282)
T ss_pred -------------CCCHHHHhhh--cCEEEEccCCcCcCCHHHcC
Confidence 1257777776 99999999999999999987
No 207
>PRK10886 DnaA initiator-associating protein DiaA; Provisional
Probab=75.08 E-value=13 Score=37.17 Aligned_cols=148 Identities=16% Similarity=0.168 Sum_probs=77.3
Q ss_pred CCCceEEEeCcChHHHHHHHHHHHHHHhccCCCHHh-hcCeEEEEcccCcccCCcccCCchhchhhhcccCCCCCHHHHH
Q 007802 327 LADQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEE-ARKKIWLVDSKGLIVSSRKESLQHFKKPWAHEHAPIKSLLDAV 405 (589)
Q Consensus 327 l~d~riv~~GAGsAg~GiA~ll~~~~~~~~G~s~ee-A~~~i~~vD~~GLv~~~r~~~l~~~k~~fa~~~~~~~~L~e~V 405 (589)
.+++||.|+|.|..+. +|..+...|.. ++..+- +..-+.+.|..-+++.-- +-..+-.-|++. |.-..
T Consensus 39 ~~~~rI~~~G~GgSa~-~A~~~a~~l~~--~~~~~r~gl~a~~l~~d~~~~ta~a--nd~~~~~~f~~q------l~~~~ 107 (196)
T PRK10886 39 LNGNKILCCGNGTSAA-NAQHFAASMIN--RFETERPSLPAIALNTDNVVLTAIA--NDRLHDEVYAKQ------VRALG 107 (196)
T ss_pred HcCCEEEEEECcHHHH-HHHHHHHHHhc--cccccCCCcceEEecCcHHHHHHHh--ccccHHHHHHHH------HHHcC
Confidence 4679999999998875 77777766542 110000 112222333322322211 112334455542 32222
Q ss_pred hccCCcEEEeecCCCCCCCHHHHHHHHcCCCCcEEEecCCCCCCCCCCHHHHhccccCcEEEeeCCCCCcceeCCeeeCC
Q 007802 406 KAIKPTMLMGTSGVGKTFTKEVVEAMASFNEKPVIFALSNPTSQSECTAEEAYTWSKGQAIFASGSPFDPVEYNGKVFVP 485 (589)
Q Consensus 406 ~~vkPtvLIG~S~~~g~Fteevv~~Ma~~~erPIIFaLSNPt~~~E~t~eda~~wT~GraifAsGSPf~pv~~~G~~~~p 485 (589)
-+-|++|++|..|. |+++++.+. -|.+ .+-+.|..||.|-.|+ .-..
T Consensus 108 --~~gDvli~iS~SG~--s~~v~~a~~-----------------------~Ak~-~G~~vI~IT~~~~s~l-----~~l~ 154 (196)
T PRK10886 108 --HAGDVLLAISTRGN--SRDIVKAVE-----------------------AAVT-RDMTIVALTGYDGGEL-----AGLL 154 (196)
T ss_pred --CCCCEEEEEeCCCC--CHHHHHHHH-----------------------HHHH-CCCEEEEEeCCCCChh-----hhcc
Confidence 35799999999886 899998764 2222 2334455566443333 1112
Q ss_pred CCccccccchhhhHHHHHhCCcccCHHHHHHHHHHHHhccC
Q 007802 486 GQGNNAYIFPGLGLGLIISGAIRVRDEMLLAASEALAAQVT 526 (589)
Q Consensus 486 ~Q~NN~~iFPGiglG~~~~~a~~Itd~m~~aAA~aLA~~v~ 526 (589)
+.++=....|.-- ..+-.++-+..-+.|.+++.
T Consensus 155 ~~~D~~i~ip~~~--------~~~v~e~h~~i~H~l~~~v~ 187 (196)
T PRK10886 155 GPQDVEIRIPSHR--------SARIQEMHMLTVNCLCDLID 187 (196)
T ss_pred ccCCEEEEcCCCc--------hHHHHHHHHHHHHHHHHHHH
Confidence 2344455555322 23445666667777777763
No 208
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=74.97 E-value=6.6 Score=44.05 Aligned_cols=85 Identities=18% Similarity=0.166 Sum_probs=62.7
Q ss_pred eEeecCCCccHHHHHHHHcC-CCc--eeccCCCchHHHHHHHHHHHHHHhC--------CCCCCceEEEeCcChHHHHHH
Q 007802 277 IQFEDFANHNAFELLSKYSS-SHL--VFNDDIQGTASVVLAGILSALKLVG--------GTLADQTFLFLGAGEAGTGIA 345 (589)
Q Consensus 277 Iq~EDf~~~~Af~iL~ryr~-~~~--~FnDDiQGTaaV~lAgll~Alr~~g--------~~l~d~riv~~GAGsAg~GiA 345 (589)
|.+|=+...+-.++.++|.- .+| .+||+....|....+-++..++... ....+..+||+|||.||+..|
T Consensus 148 i~~~~id~~~~~~~~~~~~v~~VP~~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvvIIGgGpaGl~aA 227 (517)
T PRK15317 148 ITHTMIDGALFQDEVEARNIMAVPTVFLNGEEFGQGRMTLEEILAKLDTGAAARAAEELNAKDPYDVLVVGGGPAGAAAA 227 (517)
T ss_pred ceEEEEEchhCHhHHHhcCCcccCEEEECCcEEEecCCCHHHHHHHHhccccccchhhcccCCCCCEEEECCCHHHHHHH
Confidence 66666667777889999973 444 4577788888898999999887532 224456899999999999999
Q ss_pred HHHHHHHHhccCCCHHhhcCeEEEEccc
Q 007802 346 ELIALEMSKQTKAPIEEARKKIWLVDSK 373 (589)
Q Consensus 346 ~ll~~~~~~~~G~s~eeA~~~i~~vD~~ 373 (589)
..+.. .|+ ++.++|.+
T Consensus 228 ~~la~-----~G~-------~v~li~~~ 243 (517)
T PRK15317 228 IYAAR-----KGI-------RTGIVAER 243 (517)
T ss_pred HHHHH-----CCC-------cEEEEecC
Confidence 98854 374 46666654
No 209
>PRK14169 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=74.76 E-value=17 Score=38.45 Aligned_cols=85 Identities=20% Similarity=0.275 Sum_probs=66.5
Q ss_pred chHHHHHHHHHHHHHHhCCCCCCceEEEeCcC-hHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEcccCcccCCcccCCc
Q 007802 307 GTASVVLAGILSALKLVGGTLADQTFLFLGAG-EAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLIVSSRKESLQ 385 (589)
Q Consensus 307 GTaaV~lAgll~Alr~~g~~l~d~riv~~GAG-sAg~GiA~ll~~~~~~~~G~s~eeA~~~i~~vD~~GLv~~~r~~~l~ 385 (589)
+-.-+|-.|++.=++-.+.+++++++|++|.+ ..|.-+|.||.. .|. .+.++.++
T Consensus 134 ~~~PcTp~avi~lL~~~~i~l~Gk~vvViGrS~iVGkPla~lL~~-----~~a-------tVtichs~------------ 189 (282)
T PRK14169 134 TVVASTPYGIMALLDAYDIDVAGKRVVIVGRSNIVGRPLAGLMVN-----HDA-------TVTIAHSK------------ 189 (282)
T ss_pred CCCCCCHHHHHHHHHHhCCCCCCCEEEEECCCccchHHHHHHHHH-----CCC-------EEEEECCC------------
Confidence 34567888889999999999999999999975 467888877753 242 35555443
Q ss_pred hhchhhhcccCCCCCHHHHHhccCCcEEEeecCCCCCCCHHHHH
Q 007802 386 HFKKPWAHEHAPIKSLLDAVKAIKPTMLMGTSGVGKTFTKEVVE 429 (589)
Q Consensus 386 ~~k~~fa~~~~~~~~L~e~V~~vkPtvLIG~S~~~g~Fteevv~ 429 (589)
.++|.+.+++ +|++|-..+.++.|+.|+|+
T Consensus 190 ------------T~~l~~~~~~--ADIvI~AvG~p~~i~~~~vk 219 (282)
T PRK14169 190 ------------TRNLKQLTKE--ADILVVAVGVPHFIGADAVK 219 (282)
T ss_pred ------------CCCHHHHHhh--CCEEEEccCCcCccCHHHcC
Confidence 1358888886 99999999999999999997
No 210
>TIGR02371 ala_DH_arch alanine dehydrogenase, Archaeoglobus fulgidus type. This enzyme, a homolog of bacterial ornithine cyclodeaminases and marsupial mu-crystallins, is a homodimeric, NAD-dependent alanine dehydrogenase found in Archaeoglobus fulgidus and several other Archaea. For a number of close homologs, scoring between trusted and noise cutoffs, it is not clear at present what is the enzymatic activity.
Probab=74.76 E-value=18 Score=38.54 Aligned_cols=104 Identities=15% Similarity=0.112 Sum_probs=65.0
Q ss_pred CCceEEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEcccCcccCCcccCCchhchhhhccc---CCCCCHHHH
Q 007802 328 ADQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLIVSSRKESLQHFKKPWAHEH---APIKSLLDA 404 (589)
Q Consensus 328 ~d~riv~~GAGsAg~GiA~ll~~~~~~~~G~s~eeA~~~i~~vD~~GLv~~~r~~~l~~~k~~fa~~~---~~~~~L~e~ 404 (589)
.-.++.|+|+|.-|-.-++.+... . . -++|+++|+. .++ ...+...+.+.. ....+..|+
T Consensus 127 ~~~~lgiiG~G~qA~~~l~al~~~--~--~------~~~v~V~~r~----~~~---~~~~~~~~~~~g~~v~~~~~~~ea 189 (325)
T TIGR02371 127 DSSVLGIIGAGRQAWTQLEALSRV--F--D------LEEVSVYCRT----PST---REKFALRASDYEVPVRAATDPREA 189 (325)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhc--C--C------CCEEEEECCC----HHH---HHHHHHHHHhhCCcEEEeCCHHHH
Confidence 357899999999876655444321 1 2 3788888874 222 222222222211 124689999
Q ss_pred HhccCCcEEEeec-CCCCCCCHHHHHHHHcCCCCcEEEecCCCC-CCCCCCHHH
Q 007802 405 VKAIKPTMLMGTS-GVGKTFTKEVVEAMASFNEKPVIFALSNPT-SQSECTAEE 456 (589)
Q Consensus 405 V~~vkPtvLIG~S-~~~g~Fteevv~~Ma~~~erPIIFaLSNPt-~~~E~t~ed 456 (589)
++. .|++|-+. +....|..+.++ +..-|-++.-.+ .+.|+.++-
T Consensus 190 v~~--aDiVitaT~s~~P~~~~~~l~------~g~~v~~vGs~~p~~~Eld~~~ 235 (325)
T TIGR02371 190 VEG--CDILVTTTPSRKPVVKADWVS------EGTHINAIGADAPGKQELDPEI 235 (325)
T ss_pred hcc--CCEEEEecCCCCcEecHHHcC------CCCEEEecCCCCcccccCCHHH
Confidence 975 89998654 333478887774 556788887544 378999864
No 211
>KOG0069 consensus Glyoxylate/hydroxypyruvate reductase (D-isomer-specific 2-hydroxy acid dehydrogenase superfamily) [Energy production and conversion]
Probab=74.53 E-value=15 Score=39.92 Aligned_cols=110 Identities=18% Similarity=0.250 Sum_probs=71.3
Q ss_pred chHHHHHHHHHHHHHHh--------------------CCCCCCceEEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCe
Q 007802 307 GTASVVLAGILSALKLV--------------------GGTLADQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKK 366 (589)
Q Consensus 307 GTaaV~lAgll~Alr~~--------------------g~~l~d~riv~~GAGsAg~GiA~ll~~~~~~~~G~s~eeA~~~ 366 (589)
-||-++++-+|.++|-. |.+++++||.|+|.|+.|.-||+.|..+ |. .
T Consensus 120 ~vAd~~~~lil~~~R~~~~g~~~~~~g~w~~~~~~~~g~~~~gK~vgilG~G~IG~~ia~rL~~F-----g~-------~ 187 (336)
T KOG0069|consen 120 DVADLAVSLLLALLRRFSEGNEMVRNGGWGWAGGWPLGYDLEGKTVGILGLGRIGKAIAKRLKPF-----GC-------V 187 (336)
T ss_pred HHHHHHHHHHHHHHhhhhhhhhhhhcCCccccCCccccccccCCEEEEecCcHHHHHHHHhhhhc-----cc-------e
Confidence 47778888888888742 3568899999999999999999999763 21 2
Q ss_pred EEEEcccCcccCCcccC-CchhchhhhcccCCCCCHHHHHhccCCcEEEeecCC----CCCCCHHHHHHHHcCCCCcEEE
Q 007802 367 IWLVDSKGLIVSSRKES-LQHFKKPWAHEHAPIKSLLDAVKAIKPTMLMGTSGV----GKTFTKEVVEAMASFNEKPVIF 441 (589)
Q Consensus 367 i~~vD~~GLv~~~r~~~-l~~~k~~fa~~~~~~~~L~e~V~~vkPtvLIG~S~~----~g~Fteevv~~Ma~~~erPIIF 441 (589)
|. +.+|... ....+..+++ .-++.|...+ .|+||=..-- -++|+++.+..|. +.=+|.
T Consensus 188 i~--------y~~r~~~~~~~~~~~~~~----~~d~~~~~~~--sD~ivv~~pLt~~T~~liNk~~~~~mk---~g~vlV 250 (336)
T KOG0069|consen 188 IL--------YHSRTQLPPEEAYEYYAE----FVDIEELLAN--SDVIVVNCPLTKETRHLINKKFIEKMK---DGAVLV 250 (336)
T ss_pred ee--------eecccCCchhhHHHhccc----ccCHHHHHhh--CCEEEEecCCCHHHHHHhhHHHHHhcC---CCeEEE
Confidence 33 3334211 2223334443 2467777765 8888744321 2689999999985 444554
Q ss_pred ecCC
Q 007802 442 ALSN 445 (589)
Q Consensus 442 aLSN 445 (589)
-.+.
T Consensus 251 N~aR 254 (336)
T KOG0069|consen 251 NTAR 254 (336)
T ss_pred eccc
Confidence 4443
No 212
>TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase. This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli.
Probab=74.27 E-value=26 Score=39.84 Aligned_cols=195 Identities=17% Similarity=0.136 Sum_probs=109.0
Q ss_pred CCCceeccC---CCchHHHHHHHHHHHHHH------------------hCCCCCCceEEEeCcChHHHHHHHHHHHHHHh
Q 007802 296 SSHLVFNDD---IQGTASVVLAGILSALKL------------------VGGTLADQTFLFLGAGEAGTGIAELIALEMSK 354 (589)
Q Consensus 296 ~~~~~FnDD---iQGTaaV~lAgll~Alr~------------------~g~~l~d~riv~~GAGsAg~GiA~ll~~~~~~ 354 (589)
..+++.|-- -+.+|=-+++.+|+..|- .|..|.++++.|+|-|..|-.+|+.+...
T Consensus 84 ~gI~V~n~pg~~~~~vAE~~~~l~L~~~R~~~~~~~~~~~g~W~~~~~~g~~l~gktvgIiG~G~IG~~vA~~l~~f--- 160 (525)
T TIGR01327 84 RGILVVNAPTGNTISAAEHALAMLLAAARNIPQADASLKEGEWDRKAFMGTELYGKTLGVIGLGRIGSIVAKRAKAF--- 160 (525)
T ss_pred CCCEEEeCCCcChHHHHHHHHHHHHHHhcCHHHHHHHHHcCCccccccCccccCCCEEEEECCCHHHHHHHHHHHhC---
Confidence 355555532 123455566777766552 24578999999999999999999988542
Q ss_pred ccCCCHHhhcCeEEEEcccCcccCCcccCCchhchhhhcccCCCCCHHHHHhccCCcEEEeec----CCCCCCCHHHHHH
Q 007802 355 QTKAPIEEARKKIWLVDSKGLIVSSRKESLQHFKKPWAHEHAPIKSLLDAVKAIKPTMLMGTS----GVGKTFTKEVVEA 430 (589)
Q Consensus 355 ~~G~s~eeA~~~i~~vD~~GLv~~~r~~~l~~~k~~fa~~~~~~~~L~e~V~~vkPtvLIG~S----~~~g~Fteevv~~ 430 (589)
|+ +++.+|+.. .... .. .+ ......+|.|+++. .|+++=.- ..-+.|+++.+..
T Consensus 161 --G~-------~V~~~d~~~--~~~~---~~----~~--g~~~~~~l~ell~~--aDvV~l~lPlt~~T~~li~~~~l~~ 218 (525)
T TIGR01327 161 --GM-------KVLAYDPYI--SPER---AE----QL--GVELVDDLDELLAR--ADFITVHTPLTPETRGLIGAEELAK 218 (525)
T ss_pred --CC-------EEEEECCCC--ChhH---HH----hc--CCEEcCCHHHHHhh--CCEEEEccCCChhhccCcCHHHHhc
Confidence 64 588888741 1110 00 00 00112479999886 88877221 2246889999998
Q ss_pred HHcCCCCcEEEecCCCCCCCCCCHHHHhccccCcEEEeeCCCCCcceeCCeeeCCCCccccccchhhhHHHHHhCCcccC
Q 007802 431 MASFNEKPVIFALSNPTSQSECTAEEAYTWSKGQAIFASGSPFDPVEYNGKVFVPGQGNNAYIFPGLGLGLIISGAIRVR 510 (589)
Q Consensus 431 Ma~~~erPIIFaLSNPt~~~E~t~eda~~wT~GraifAsGSPf~pv~~~G~~~~p~Q~NN~~iFPGiglG~~~~~a~~It 510 (589)
|. +..++.=.|.-.---|..--+|++ .|+.-.|.=-=|++--.... .--+..|+.+-|=+|-....+ -
T Consensus 219 mk---~ga~lIN~aRG~~vde~aL~~aL~--~g~i~gAaLDVf~~EP~~~~--pL~~~~nvi~TPHia~~t~e~-----~ 286 (525)
T TIGR01327 219 MK---KGVIIVNCARGGIIDEAALYEALE--EGHVRAAALDVFEKEPPTDN--PLFDLDNVIATPHLGASTREA-----Q 286 (525)
T ss_pred CC---CCeEEEEcCCCceeCHHHHHHHHH--cCCeeEEEEecCCCCCCCCC--hhhcCCCeEECCCccccHHHH-----H
Confidence 85 566777776644333333334444 67654442111110000011 112456888888877433222 2
Q ss_pred HHHHHHHHHHHHhccCc
Q 007802 511 DEMLLAASEALAAQVTQ 527 (589)
Q Consensus 511 d~m~~aAA~aLA~~v~~ 527 (589)
..|...+++.+-+....
T Consensus 287 ~~~~~~~~~ni~~~~~g 303 (525)
T TIGR01327 287 ENVATQVAEQVLDALKG 303 (525)
T ss_pred HHHHHHHHHHHHHHHcC
Confidence 34444555555555443
No 213
>COG1486 CelF Alpha-galactosidases/6-phospho-beta-glucosidases, family 4 of glycosyl hydrolases [Carbohydrate transport and metabolism]
Probab=74.18 E-value=4.1 Score=45.61 Aligned_cols=124 Identities=15% Similarity=0.312 Sum_probs=81.3
Q ss_pred CCceEEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEcccCcccCCcccCCchhchhhhcc-cCCC-----CCH
Q 007802 328 ADQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLIVSSRKESLQHFKKPWAHE-HAPI-----KSL 401 (589)
Q Consensus 328 ~d~riv~~GAGsAg~GiA~ll~~~~~~~~G~s~eeA~~~i~~vD~~GLv~~~r~~~l~~~k~~fa~~-~~~~-----~~L 401 (589)
+..||+|+||||.. ..+++...+.+.+.++. ..|||+|-+ .+|.+.....-+.+.+. ..+. .++
T Consensus 2 ~~~KI~iIGgGSt~--tp~~v~g~l~~~e~l~~----~el~L~Did----~~r~~~i~~~~~~~v~~~g~~~kv~~ttd~ 71 (442)
T COG1486 2 KKFKIVIIGGGSTY--TPKLLLGDLARTEELPV----RELALYDID----EERLKIIAILAKKLVEEAGAPVKVEATTDR 71 (442)
T ss_pred CcceEEEECCCccc--cHHHHHHHHhcCccCCc----ceEEEEeCC----HHHHHHHHHHHHHHHHhhCCCeEEEEecCH
Confidence 45799999999985 67888888777667763 689999975 44432111122223322 1222 578
Q ss_pred HHHHhccCCcEEEee--------------------------cCCCCCCC--------HHHHHHHHcCCCCcEEEecCCCC
Q 007802 402 LDAVKAIKPTMLMGT--------------------------SGVGKTFT--------KEVVEAMASFNEKPVIFALSNPT 447 (589)
Q Consensus 402 ~e~V~~vkPtvLIG~--------------------------S~~~g~Ft--------eevv~~Ma~~~erPIIFaLSNPt 447 (589)
.||++. +|..|=. -++||.|. -|+++.|-+.|..--++=.+||-
T Consensus 72 ~eAl~g--AdfVi~~~rvG~l~~r~~De~IplkyG~~gqET~G~GGi~~glRtIpvildi~~~m~~~~P~Aw~lNytNP~ 149 (442)
T COG1486 72 REALEG--ADFVITQIRVGGLEAREKDERIPLKHGLYGQETNGPGGIFYGLRTIPVILDIAKDMEKVCPNAWMLNYTNPA 149 (442)
T ss_pred HHHhcC--CCEEEEEEeeCCcccchhhhccchhhCccccccccccHHHhhcccchHHHHHHHHHHHhCCCceEEeccChH
Confidence 899887 6655422 22334332 48999999999999999999998
Q ss_pred CCCCCCHHHHhccccC-cEE
Q 007802 448 SQSECTAEEAYTWSKG-QAI 466 (589)
Q Consensus 448 ~~~E~t~eda~~wT~G-rai 466 (589)
+++|- -.++|+.+ |.|
T Consensus 150 --~~vTe-Av~r~~~~~K~V 166 (442)
T COG1486 150 --AIVTE-AVRRLYPKIKIV 166 (442)
T ss_pred --HHHHH-HHHHhCCCCcEE
Confidence 77764 34555554 444
No 214
>cd05294 LDH-like_MDH_nadp A lactate dehydrogenases-like structure with malate dehydrogenase enzymatic activity. The LDH-like MDH proteins have a lactate dehyhydrogenase-like (LDH-like) structure and malate dehydrogenase (MDH) enzymatic activity. This subgroup is composed of some archaeal LDH-like MDHs that prefer NADP(H) rather than NAD(H) as a cofactor. One member, MJ0490 from Methanococcus jannaschii, has been observed to form dimers and tetramers during crystalization, although it is believed to exist primarilly as a tetramer in solution. In addition to its MDH activity, MJ0490 also possesses fructose-1,6-bisphosphate-activated LDH activity. Members of this subgroup have a higher sequence similarity to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carbox
Probab=73.94 E-value=16 Score=38.71 Aligned_cols=99 Identities=24% Similarity=0.358 Sum_probs=63.3
Q ss_pred eEEEeCc-ChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEcccCcccCCcccCCchhchhhhc----cc--CCC---CC
Q 007802 331 TFLFLGA-GEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLIVSSRKESLQHFKKPWAH----EH--API---KS 400 (589)
Q Consensus 331 riv~~GA-GsAg~GiA~ll~~~~~~~~G~s~eeA~~~i~~vD~~GLv~~~r~~~l~~~k~~fa~----~~--~~~---~~ 400 (589)
||.|+|| |..|..+|..++. .|+ ...+.++|++--+. .+..++.++.+ .. ..+ .+
T Consensus 2 kI~IiGatG~vG~~~a~~l~~-----~g~-----~~~v~lvd~~~~~~-----~l~~~~~dl~d~~~~~~~~~~i~~~~d 66 (309)
T cd05294 2 KVSIIGASGRVGSATALLLAK-----EDV-----VKEINLISRPKSLE-----KLKGLRLDIYDALAAAGIDAEIKISSD 66 (309)
T ss_pred EEEEECCCChHHHHHHHHHHh-----CCC-----CCEEEEEECccccc-----ccccccchhhhchhccCCCcEEEECCC
Confidence 7999998 9999999998765 365 24799999852111 12112211111 00 111 24
Q ss_pred HHHHHhccCCcEEEeecCCC---C-----------CCCHHHHHHHHcCCCCcEEEecCCCC
Q 007802 401 LLDAVKAIKPTMLMGTSGVG---K-----------TFTKEVVEAMASFNEKPVIFALSNPT 447 (589)
Q Consensus 401 L~e~V~~vkPtvLIG~S~~~---g-----------~Fteevv~~Ma~~~erPIIFaLSNPt 447 (589)
. +.+++ .|++|=+.+.+ | .+-+++++.|.+++...+|+-.+||.
T Consensus 67 ~-~~l~~--aDiViitag~p~~~~~~r~dl~~~n~~i~~~~~~~i~~~~~~~~viv~~npv 124 (309)
T cd05294 67 L-SDVAG--SDIVIITAGVPRKEGMSRLDLAKKNAKIVKKYAKQIAEFAPDTKILVVTNPV 124 (309)
T ss_pred H-HHhCC--CCEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEeCCch
Confidence 3 45665 88887665543 1 24567888899999999999999997
No 215
>PRK14181 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=73.56 E-value=18 Score=38.41 Aligned_cols=89 Identities=20% Similarity=0.330 Sum_probs=66.2
Q ss_pred chHHHHHHHHHHHHHHhCCCCCCceEEEeCcCh-HHHHHHHHHHHHHHhccCCCHHhhcCeEEEEcccCcccCCcccCCc
Q 007802 307 GTASVVLAGILSALKLVGGTLADQTFLFLGAGE-AGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLIVSSRKESLQ 385 (589)
Q Consensus 307 GTaaV~lAgll~Alr~~g~~l~d~riv~~GAGs-Ag~GiA~ll~~~~~~~~G~s~eeA~~~i~~vD~~GLv~~~r~~~l~ 385 (589)
+-.-+|-.|++.=++-.|.+|+++++|++|-+. .|.-+|.||.. .|... ...+.+|.++
T Consensus 131 ~~~PcTp~avi~lL~~~~i~l~Gk~vvViGrS~iVGkPla~lL~~-----~~~~~---~AtVtvchs~------------ 190 (287)
T PRK14181 131 GFIPCTPAGIIELLKYYEIPLHGRHVAIVGRSNIVGKPLAALLMQ-----KHPDT---NATVTLLHSQ------------ 190 (287)
T ss_pred CCCCCCHHHHHHHHHHhCCCCCCCEEEEECCCccchHHHHHHHHh-----CcCCC---CCEEEEeCCC------------
Confidence 345678888899999999999999999999764 67777777753 23210 0234444332
Q ss_pred hhchhhhcccCCCCCHHHHHhccCCcEEEeecCCCCCCCHHHHH
Q 007802 386 HFKKPWAHEHAPIKSLLDAVKAIKPTMLMGTSGVGKTFTKEVVE 429 (589)
Q Consensus 386 ~~k~~fa~~~~~~~~L~e~V~~vkPtvLIG~S~~~g~Fteevv~ 429 (589)
.++|.+.+++ +|++|-..+.++.+++|+|+
T Consensus 191 ------------T~~l~~~~~~--ADIvV~AvG~p~~i~~~~ik 220 (287)
T PRK14181 191 ------------SENLTEILKT--ADIIIAAIGVPLFIKEEMIA 220 (287)
T ss_pred ------------CCCHHHHHhh--CCEEEEccCCcCccCHHHcC
Confidence 1358888886 99999999999999999997
No 216
>PRK14182 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=73.22 E-value=18 Score=38.41 Aligned_cols=83 Identities=16% Similarity=0.220 Sum_probs=64.4
Q ss_pred HHHHHHHHHHHHHHhCCCCCCceEEEeCcCh-HHHHHHHHHHHHHHhccCCCHHhhcCeEEEEcccCcccCCcccCCchh
Q 007802 309 ASVVLAGILSALKLVGGTLADQTFLFLGAGE-AGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLIVSSRKESLQHF 387 (589)
Q Consensus 309 aaV~lAgll~Alr~~g~~l~d~riv~~GAGs-Ag~GiA~ll~~~~~~~~G~s~eeA~~~i~~vD~~GLv~~~r~~~l~~~ 387 (589)
.-+|-.|++.=++-.+.++++++++++|-+. .|.-+|.||.. .| ..+.+|+++
T Consensus 137 ~PcTp~avi~ll~~~~i~l~Gk~vvViGrS~iVGkPla~lL~~-----~~-------AtVtichs~-------------- 190 (282)
T PRK14182 137 RPCTPAGVMRMLDEARVDPKGKRALVVGRSNIVGKPMAMMLLE-----RH-------ATVTIAHSR-------------- 190 (282)
T ss_pred CCCCHHHHHHHHHHhCCCCCCCEEEEECCCCcchHHHHHHHHH-----CC-------CEEEEeCCC--------------
Confidence 4667888899999999999999999999764 67777777743 23 235555432
Q ss_pred chhhhcccCCCCCHHHHHhccCCcEEEeecCCCCCCCHHHHH
Q 007802 388 KKPWAHEHAPIKSLLDAVKAIKPTMLMGTSGVGKTFTKEVVE 429 (589)
Q Consensus 388 k~~fa~~~~~~~~L~e~V~~vkPtvLIG~S~~~g~Fteevv~ 429 (589)
.++|.+.+++ +|++|-..+.++.+++++|+
T Consensus 191 ----------T~nl~~~~~~--ADIvI~AvGk~~~i~~~~ik 220 (282)
T PRK14182 191 ----------TADLAGEVGR--ADILVAAIGKAELVKGAWVK 220 (282)
T ss_pred ----------CCCHHHHHhh--CCEEEEecCCcCccCHHHcC
Confidence 1357788886 99999999999999999997
No 217
>PRK14186 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=73.18 E-value=18 Score=38.67 Aligned_cols=83 Identities=18% Similarity=0.298 Sum_probs=65.1
Q ss_pred HHHHHHHHHHHHHHhCCCCCCceEEEeCcC-hHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEcccCcccCCcccCCchh
Q 007802 309 ASVVLAGILSALKLVGGTLADQTFLFLGAG-EAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLIVSSRKESLQHF 387 (589)
Q Consensus 309 aaV~lAgll~Alr~~g~~l~d~riv~~GAG-sAg~GiA~ll~~~~~~~~G~s~eeA~~~i~~vD~~GLv~~~r~~~l~~~ 387 (589)
.-+|-.|++.=++-.|.+++++++|++|.+ ..|.-+|.||.. .|. .+.+|.++
T Consensus 138 ~PcTp~aii~lL~~~~i~l~Gk~vvVIGrS~iVGkPla~lL~~-----~~a-------tVtv~hs~-------------- 191 (297)
T PRK14186 138 RSCTPAGVMRLLRSQQIDIAGKKAVVVGRSILVGKPLALMLLA-----ANA-------TVTIAHSR-------------- 191 (297)
T ss_pred CCCCHHHHHHHHHHhCCCCCCCEEEEECCCccchHHHHHHHHH-----CCC-------EEEEeCCC--------------
Confidence 457788888889999999999999999976 468888887753 243 35555432
Q ss_pred chhhhcccCCCCCHHHHHhccCCcEEEeecCCCCCCCHHHHH
Q 007802 388 KKPWAHEHAPIKSLLDAVKAIKPTMLMGTSGVGKTFTKEVVE 429 (589)
Q Consensus 388 k~~fa~~~~~~~~L~e~V~~vkPtvLIG~S~~~g~Fteevv~ 429 (589)
.++|.+.+++ +|++|-..+.++.|+.++|+
T Consensus 192 ----------T~~l~~~~~~--ADIvIsAvGkp~~i~~~~ik 221 (297)
T PRK14186 192 ----------TQDLASITRE--ADILVAAAGRPNLIGAEMVK 221 (297)
T ss_pred ----------CCCHHHHHhh--CCEEEEccCCcCccCHHHcC
Confidence 1357788886 99999999999999999997
No 218
>PRK02842 light-independent protochlorophyllide reductase subunit N; Provisional
Probab=73.15 E-value=17 Score=40.01 Aligned_cols=88 Identities=17% Similarity=0.197 Sum_probs=52.2
Q ss_pred HHHHHHHHhCCCCCCceEEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEcccCcccCCcccCCchhchhhhc-
Q 007802 315 GILSALKLVGGTLADQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLIVSSRKESLQHFKKPWAH- 393 (589)
Q Consensus 315 gll~Alr~~g~~l~d~riv~~GAGsAg~GiA~ll~~~~~~~~G~s~eeA~~~i~~vD~~GLv~~~r~~~l~~~k~~fa~- 393 (589)
-+..++.-..+.|++.|++|+|.+.-.+++++.|.+. .|+.. ..+-+. +.++ +.+.+..+.+..
T Consensus 276 ~~~~~l~~~~~~l~Gkrvai~g~~~~~~~la~~L~ee----lGm~~-------v~v~t~---~~~~-~~~~~~~~~l~~~ 340 (427)
T PRK02842 276 RARKALEPYRELLRGKRVFFLPDSQLEIPLARFLSRE----CGMEL-------VEVGTP---YLNR-RFLAAELALLPDG 340 (427)
T ss_pred HHHHHHHHhhhhcCCcEEEEECCchhHHHHHHHHHHh----CCCEE-------EEeCCC---CCCH-HHHHHHHHhccCC
Confidence 3455666667778999999999998999999998763 37632 111110 0111 101111111111
Q ss_pred ----ccCCCCCHHHHHhccCCcEEEeec
Q 007802 394 ----EHAPIKSLLDAVKAIKPTMLMGTS 417 (589)
Q Consensus 394 ----~~~~~~~L~e~V~~vkPtvLIG~S 417 (589)
+..+...+.+.|+..|||.|||-|
T Consensus 341 ~~v~~~~D~~~l~~~i~~~~pDllig~~ 368 (427)
T PRK02842 341 VRIVEGQDVERQLDRIRALRPDLVVCGL 368 (427)
T ss_pred CEEEECCCHHHHHHHHHHcCCCEEEccC
Confidence 112223468899999999999976
No 219
>PRK06487 glycerate dehydrogenase; Provisional
Probab=73.14 E-value=79 Score=33.63 Aligned_cols=187 Identities=17% Similarity=0.142 Sum_probs=108.5
Q ss_pred CCCceeccC---CCchHHHHHHHHHHHHHHh------------------------CCCCCCceEEEeCcChHHHHHHHHH
Q 007802 296 SSHLVFNDD---IQGTASVVLAGILSALKLV------------------------GGTLADQTFLFLGAGEAGTGIAELI 348 (589)
Q Consensus 296 ~~~~~FnDD---iQGTaaV~lAgll~Alr~~------------------------g~~l~d~riv~~GAGsAg~GiA~ll 348 (589)
..+.+.|-- -+.+|=-+++.+|+..|-. +..|.++++.|+|.|..|..+|+++
T Consensus 88 ~gI~v~n~~g~~~~~vAE~~~~~~L~~~R~~~~~~~~~~~g~W~~~~~~~~~~~~~~~l~gktvgIiG~G~IG~~vA~~l 167 (317)
T PRK06487 88 RGITVCNCQGYGTPSVAQHTLALLLALATRLPDYQQAVAAGRWQQSSQFCLLDFPIVELEGKTLGLLGHGELGGAVARLA 167 (317)
T ss_pred CCCEEEeCCCCCcchHHHHHHHHHHHHHcCHHHHHHHHHcCCCccCcccccccCcccccCCCEEEEECCCHHHHHHHHHH
Confidence 355555532 1345566777777765521 2358999999999999999999988
Q ss_pred HHHHHhccCCCHHhhcCeEEEEcccCcccCCcccCCchhchhhhcccCCCCCHHHHHhccCCcEEEee----cCCCCCCC
Q 007802 349 ALEMSKQTKAPIEEARKKIWLVDSKGLIVSSRKESLQHFKKPWAHEHAPIKSLLDAVKAIKPTMLMGT----SGVGKTFT 424 (589)
Q Consensus 349 ~~~~~~~~G~s~eeA~~~i~~vD~~GLv~~~r~~~l~~~k~~fa~~~~~~~~L~e~V~~vkPtvLIG~----S~~~g~Ft 424 (589)
.. | |+ +|+.+|+.+ ... .+ ...+|.|+++. .|+++=. ....|.|+
T Consensus 168 ~~-f----gm-------~V~~~~~~~-----~~~-------~~-----~~~~l~ell~~--sDiv~l~lPlt~~T~~li~ 216 (317)
T PRK06487 168 EA-F----GM-------RVLIGQLPG-----RPA-------RP-----DRLPLDELLPQ--VDALTLHCPLTEHTRHLIG 216 (317)
T ss_pred hh-C----CC-------EEEEECCCC-----Ccc-------cc-----cccCHHHHHHh--CCEEEECCCCChHHhcCcC
Confidence 53 2 65 466677652 000 00 12379999986 8988732 22247999
Q ss_pred HHHHHHHHcCCCCcEEEecCCCCCCCCCCHHHHhc--cccCcEEEeeCCCC--CcceeCCeeeCCCCccccccchhhhHH
Q 007802 425 KEVVEAMASFNEKPVIFALSNPTSQSECTAEEAYT--WSKGQAIFASGSPF--DPVEYNGKVFVPGQGNNAYIFPGLGLG 500 (589)
Q Consensus 425 eevv~~Ma~~~erPIIFaLSNPt~~~E~t~eda~~--wT~GraifAsGSPf--~pv~~~G~~~~p~Q~NN~~iFPGiglG 500 (589)
++.+..|. +..++.=.|. .++--|+|+. ..+|+.-.|.=-=| +|.. .+..+.--+..|+++-|=+|-.
T Consensus 217 ~~~~~~mk---~ga~lIN~aR----G~vVde~AL~~AL~~g~i~gAaLDVf~~EP~~-~~~pl~~~~~pnvilTPHia~~ 288 (317)
T PRK06487 217 ARELALMK---PGALLINTAR----GGLVDEQALADALRSGHLGGAATDVLSVEPPV-NGNPLLAPDIPRLIVTPHSAWG 288 (317)
T ss_pred HHHHhcCC---CCeEEEECCC----ccccCHHHHHHHHHcCCeeEEEeecCCCCCCC-CCCchhhcCCCCEEECCccccC
Confidence 99999995 5667775554 4555554442 23676654422112 1111 1111110035689999988722
Q ss_pred HHHhCCcccCHHHHHHHHHHHHhccC
Q 007802 501 LIISGAIRVRDEMLLAASEALAAQVT 526 (589)
Q Consensus 501 ~~~~~a~~Itd~m~~aAA~aLA~~v~ 526 (589)
. ..-.+.|...+++.|.+...
T Consensus 289 t-----~e~~~~~~~~~~~ni~~~~~ 309 (317)
T PRK06487 289 S-----REARQRIVGQLAENARAFFA 309 (317)
T ss_pred C-----HHHHHHHHHHHHHHHHHHHc
Confidence 2 22234455555555555543
No 220
>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=72.40 E-value=16 Score=40.79 Aligned_cols=36 Identities=25% Similarity=0.403 Sum_probs=28.8
Q ss_pred CCCCceEEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEccc
Q 007802 326 TLADQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSK 373 (589)
Q Consensus 326 ~l~d~riv~~GAGsAg~GiA~ll~~~~~~~~G~s~eeA~~~i~~vD~~ 373 (589)
.+...||+|+|+|-+|.++|+.+.. .|. .+.+.|++
T Consensus 12 ~~~~~~v~v~G~G~sG~a~a~~L~~-----~G~-------~V~~~D~~ 47 (473)
T PRK00141 12 QELSGRVLVAGAGVSGRGIAAMLSE-----LGC-------DVVVADDN 47 (473)
T ss_pred cccCCeEEEEccCHHHHHHHHHHHH-----CCC-------EEEEECCC
Confidence 3567899999999999999999864 363 57888864
No 221
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=72.11 E-value=7.9 Score=32.12 Aligned_cols=35 Identities=23% Similarity=0.393 Sum_probs=29.2
Q ss_pred eEEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEcccCccc
Q 007802 331 TFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLIV 377 (589)
Q Consensus 331 riv~~GAGsAg~GiA~ll~~~~~~~~G~s~eeA~~~i~~vD~~GLv~ 377 (589)
|++|+|+|..|+-+|..+... | +++.++++..-+.
T Consensus 1 ~vvViGgG~ig~E~A~~l~~~-----g-------~~vtli~~~~~~~ 35 (80)
T PF00070_consen 1 RVVVIGGGFIGIELAEALAEL-----G-------KEVTLIERSDRLL 35 (80)
T ss_dssp EEEEESSSHHHHHHHHHHHHT-----T-------SEEEEEESSSSSS
T ss_pred CEEEECcCHHHHHHHHHHHHh-----C-------cEEEEEeccchhh
Confidence 799999999999999988542 4 6789999887766
No 222
>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=71.77 E-value=9.3 Score=37.12 Aligned_cols=36 Identities=28% Similarity=0.415 Sum_probs=23.9
Q ss_pred CCCCceEEEeCc-ChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEccc
Q 007802 326 TLADQTFLFLGA-GEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSK 373 (589)
Q Consensus 326 ~l~d~riv~~GA-GsAg~GiA~ll~~~~~~~~G~s~eeA~~~i~~vD~~ 373 (589)
++++.+++|.|| |..|..+++.++ + .|. ++++++++
T Consensus 2 ~~~~~~vlItGasg~iG~~l~~~l~----~-~G~-------~V~~~~r~ 38 (251)
T PRK07231 2 RLEGKVAIVTGASSGIGEGIARRFA----A-EGA-------RVVVTDRN 38 (251)
T ss_pred CcCCcEEEEECCCChHHHHHHHHHH----H-CCC-------EEEEEeCC
Confidence 467889999997 445555555543 3 363 58888876
No 223
>cd01491 Ube1_repeat1 Ubiquitin activating enzyme (E1), repeat 1. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the first repeat of Ub-E1.
Probab=71.64 E-value=3.7 Score=43.37 Aligned_cols=38 Identities=32% Similarity=0.411 Sum_probs=34.1
Q ss_pred CCCCCceEEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEccc
Q 007802 325 GTLADQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSK 373 (589)
Q Consensus 325 ~~l~d~riv~~GAGsAg~GiA~ll~~~~~~~~G~s~eeA~~~i~~vD~~ 373 (589)
++|++-+|+++|+|..|+-||+.|+.+ |+ ++|.++|.+
T Consensus 15 ~kL~~s~VLIvG~gGLG~EiaKnLala-----GV------g~itI~D~d 52 (286)
T cd01491 15 KKLQKSNVLISGLGGLGVEIAKNLILA-----GV------KSVTLHDTK 52 (286)
T ss_pred HHHhcCcEEEEcCCHHHHHHHHHHHHc-----CC------CeEEEEcCC
Confidence 468899999999999999999999775 87 889999998
No 224
>COG0190 FolD 5,10-methylene-tetrahydrofolate dehydrogenase/Methenyl tetrahydrofolate cyclohydrolase [Coenzyme metabolism]
Probab=71.62 E-value=15 Score=38.94 Aligned_cols=118 Identities=19% Similarity=0.252 Sum_probs=80.6
Q ss_pred ceeeEeecCCCccHHHHHHHHc--CCCceecc--------CCCchHHHHHHHHHHHHHHhCCCCCCceEEEeCcCh-HHH
Q 007802 274 KVLIQFEDFANHNAFELLSKYS--SSHLVFND--------DIQGTASVVLAGILSALKLVGGTLADQTFLFLGAGE-AGT 342 (589)
Q Consensus 274 ~~lIq~EDf~~~~Af~iL~ryr--~~~~~FnD--------DiQGTaaV~lAgll~Alr~~g~~l~d~riv~~GAGs-Ag~ 342 (589)
..++|+==...-++-.+|+.-. +++==||- ...+--.+|-+|++.-++-.+.+|++.++|++|.+. .|-
T Consensus 91 GIlVQlPLp~hld~~~il~~I~p~KDVDG~hp~N~g~L~~~~~~~~PCTp~gi~~ll~~~~i~l~Gk~~vVVGrS~iVGk 170 (283)
T COG0190 91 GILVQLPLPKHLDEQKLLQAIDPEKDVDGFHPYNLGKLAQGEPGFLPCTPAGIMTLLEEYGIDLRGKNVVVVGRSNIVGK 170 (283)
T ss_pred EEEEeCCCCCCCCHHHHHhhcCcCCCccccChhHhcchhcCCCCCCCCCHHHHHHHHHHhCCCCCCCEEEEECCCCcCcH
Confidence 3566665444445555555432 11111111 133455788899999999999999999999999876 567
Q ss_pred HHHHHHHHHHHhccCCCHHhhcCeEEEEcccCcccCCcccCCchhchhhhcccCCCCCHHHHHhccCCcEEEeecCCCCC
Q 007802 343 GIAELIALEMSKQTKAPIEEARKKIWLVDSKGLIVSSRKESLQHFKKPWAHEHAPIKSLLDAVKAIKPTMLMGTSGVGKT 422 (589)
Q Consensus 343 GiA~ll~~~~~~~~G~s~eeA~~~i~~vD~~GLv~~~r~~~l~~~k~~fa~~~~~~~~L~e~V~~vkPtvLIG~S~~~g~ 422 (589)
-+|.+|... +. .+.+|+|+ .++|.+.+++ +|++|-.-+.++.
T Consensus 171 Pla~lL~~~-----na-------TVtvcHs~------------------------T~~l~~~~k~--ADIvv~AvG~p~~ 212 (283)
T COG0190 171 PLALLLLNA-----NA-------TVTVCHSR------------------------TKDLASITKN--ADIVVVAVGKPHF 212 (283)
T ss_pred HHHHHHHhC-----CC-------EEEEEcCC------------------------CCCHHHHhhh--CCEEEEecCCccc
Confidence 777777552 32 24455443 1357788886 9999999999999
Q ss_pred CCHHHHH
Q 007802 423 FTKEVVE 429 (589)
Q Consensus 423 Fteevv~ 429 (589)
|+.++|+
T Consensus 213 i~~d~vk 219 (283)
T COG0190 213 IKADMVK 219 (283)
T ss_pred ccccccc
Confidence 9998887
No 225
>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=71.54 E-value=11 Score=40.89 Aligned_cols=35 Identities=26% Similarity=0.384 Sum_probs=28.2
Q ss_pred CCCceEEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEccc
Q 007802 327 LADQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSK 373 (589)
Q Consensus 327 l~d~riv~~GAGsAg~GiA~ll~~~~~~~~G~s~eeA~~~i~~vD~~ 373 (589)
+++.+++|.|+|..|.++|+.+.+ .|. ++++.|.+
T Consensus 3 ~~~k~v~v~G~g~~G~s~a~~l~~-----~G~-------~V~~~d~~ 37 (447)
T PRK02472 3 YQNKKVLVLGLAKSGYAAAKLLHK-----LGA-------NVTVNDGK 37 (447)
T ss_pred cCCCEEEEEeeCHHHHHHHHHHHH-----CCC-------EEEEEcCC
Confidence 567899999999999999888765 363 58888864
No 226
>TIGR02622 CDP_4_6_dhtase CDP-glucose 4,6-dehydratase. Members of this protein family are CDP-glucose 4,6-dehydratase from a variety of Gram-negative and Gram-positive bacteria. Members typically are encoded next to a gene that encodes a glucose-1-phosphate cytidylyltransferase, which produces the substrate, CDP-D-glucose, used by this enzyme to produce CDP-4-keto-6-deoxyglucose.
Probab=71.53 E-value=11 Score=39.32 Aligned_cols=106 Identities=16% Similarity=0.107 Sum_probs=59.4
Q ss_pred CCCceEEEeCc-ChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEcccCcccCCcccCCch-hchhhhc-ccCCCCCHHH
Q 007802 327 LADQTFLFLGA-GEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLIVSSRKESLQH-FKKPWAH-EHAPIKSLLD 403 (589)
Q Consensus 327 l~d~riv~~GA-GsAg~GiA~ll~~~~~~~~G~s~eeA~~~i~~vD~~GLv~~~r~~~l~~-~k~~fa~-~~~~~~~L~e 403 (589)
+++.+|+|.|| |-.|..+++.|++ .| .+++.+|++.--.....+.+.. .+..+.. +-.+..++.+
T Consensus 2 ~~~k~ilItGatG~IG~~l~~~L~~-----~G-------~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~ 69 (349)
T TIGR02622 2 WQGKKVLVTGHTGFKGSWLSLWLLE-----LG-------AEVYGYSLDPPTSPNLFELLNLAKKIEDHFGDIRDAAKLRK 69 (349)
T ss_pred cCCCEEEEECCCChhHHHHHHHHHH-----CC-------CEEEEEeCCCccchhHHHHHhhcCCceEEEccCCCHHHHHH
Confidence 45678999996 7778777777764 25 3578777652100000000000 0001111 1122246778
Q ss_pred HHhccCCcEEEeecCCCCC----------------CCHHHHHHHHcCC-CCcEEEecC
Q 007802 404 AVKAIKPTMLMGTSGVGKT----------------FTKEVVEAMASFN-EKPVIFALS 444 (589)
Q Consensus 404 ~V~~vkPtvLIG~S~~~g~----------------Fteevv~~Ma~~~-erPIIFaLS 444 (589)
+++..+||++|=+.+.+.. .+..+++.|.+.+ .+.+||.=|
T Consensus 70 ~~~~~~~d~vih~A~~~~~~~~~~~~~~~~~~N~~g~~~ll~a~~~~~~~~~iv~~SS 127 (349)
T TIGR02622 70 AIAEFKPEIVFHLAAQPLVRKSYADPLETFETNVMGTVNLLEAIRAIGSVKAVVNVTS 127 (349)
T ss_pred HHhhcCCCEEEECCcccccccchhCHHHHHHHhHHHHHHHHHHHHhcCCCCEEEEEec
Confidence 8888899999987764311 1345677776554 457888655
No 227
>cd01486 Apg7 Apg7 is an E1-like protein, that activates two different ubiquitin-like proteins, Apg12 and Apg8, and assigns them to specific E2 enzymes, Apg10 and Apg3, respectively. This leads to the covalent conjugation of Apg8 with phosphatidylethanolamine, an important step in autophagy. Autophagy is a dynamic membrane phenomenon for bulk protein degradation in the lysosome/vacuole.
Probab=71.47 E-value=5.1 Score=42.93 Aligned_cols=68 Identities=24% Similarity=0.276 Sum_probs=43.3
Q ss_pred eEEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEcccCcccCCcccCCchhchhhhccc---C--CCCCHHHHH
Q 007802 331 TFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLIVSSRKESLQHFKKPWAHEH---A--PIKSLLDAV 405 (589)
Q Consensus 331 riv~~GAGsAg~GiA~ll~~~~~~~~G~s~eeA~~~i~~vD~~GLv~~~r~~~l~~~k~~fa~~~---~--~~~~L~e~V 405 (589)
||+++|+|.-|.-+|+.|+.+ |+ ++|.++|.+= |..+ +|..+- -|-.+. . ....+.+.+
T Consensus 1 kVLIvGaGGLGs~vA~~La~a-----GV------g~ItlvD~D~-Ve~s---NL~RQ~-L~~~~D~~iGk~Ka~aaa~~L 64 (307)
T cd01486 1 KCLLLGAGTLGCNVARNLLGW-----GV------RHITFVDSGK-VSYS---NPVRQS-LFTFEDCKGGKPKAEAAAERL 64 (307)
T ss_pred CEEEECCCHHHHHHHHHHHHc-----CC------CeEEEECCCE-eccc---cCCccc-ccccchhhcCccHHHHHHHHH
Confidence 689999999999999999775 76 7899999862 2221 233221 111111 0 112566777
Q ss_pred hccCCcEEE
Q 007802 406 KAIKPTMLM 414 (589)
Q Consensus 406 ~~vkPtvLI 414 (589)
+.+.|++=|
T Consensus 65 ~~iNP~v~v 73 (307)
T cd01486 65 KEIFPSIDA 73 (307)
T ss_pred HHHCCCcEE
Confidence 777777643
No 228
>COG0476 ThiF Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 2 [Coenzyme metabolism]
Probab=71.32 E-value=5.3 Score=40.55 Aligned_cols=56 Identities=29% Similarity=0.347 Sum_probs=42.8
Q ss_pred HHHHcCCCceeccCCCchHHHHHHHHHHHHHHhCCCCCCceEEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEE
Q 007802 291 LSKYSSSHLVFNDDIQGTASVVLAGILSALKLVGGTLADQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLV 370 (589)
Q Consensus 291 L~ryr~~~~~FnDDiQGTaaV~lAgll~Alr~~g~~l~d~riv~~GAGsAg~GiA~ll~~~~~~~~G~s~eeA~~~i~~v 370 (589)
++||..++....-.. .- -++|++-|++++|+|.-|.-+++.|+.+ |+ ++++++
T Consensus 8 ~~ry~Rqi~l~~~~~---------------~~-q~~l~~s~vlvvG~GglG~~~~~~la~a-----Gv------g~l~i~ 60 (254)
T COG0476 8 IERYSRQILLPGIGG---------------EG-QQKLKDSRVLVVGAGGLGSPAAKYLALA-----GV------GKLTIV 60 (254)
T ss_pred HHhhcceeeecccCH---------------HH-HHHHhhCCEEEEecChhHHHHHHHHHHc-----CC------CeEEEE
Confidence 467777766654433 11 3578999999999999999999998775 66 569999
Q ss_pred ccc
Q 007802 371 DSK 373 (589)
Q Consensus 371 D~~ 373 (589)
|.+
T Consensus 61 D~d 63 (254)
T COG0476 61 DFD 63 (254)
T ss_pred cCC
Confidence 987
No 229
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=71.18 E-value=8.6 Score=40.25 Aligned_cols=103 Identities=17% Similarity=0.151 Sum_probs=56.9
Q ss_pred ceEEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEcccCcccCCcccCCc-----hhchhhhccc-CCCCCHHH
Q 007802 330 QTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLIVSSRKESLQ-----HFKKPWAHEH-APIKSLLD 403 (589)
Q Consensus 330 ~riv~~GAGsAg~GiA~ll~~~~~~~~G~s~eeA~~~i~~vD~~GLv~~~r~~~l~-----~~k~~fa~~~-~~~~~L~e 403 (589)
.||.|+|+|..|..+|..+..+ | .+++++|+..-...-+...+. ..+..+.... ....++ +
T Consensus 3 mkI~IiG~G~mG~~~A~~L~~~-----G-------~~V~~~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~-~ 69 (341)
T PRK08229 3 ARICVLGAGSIGCYLGGRLAAA-----G-------ADVTLIGRARIGDELRAHGLTLTDYRGRDVRVPPSAIAFSTDP-A 69 (341)
T ss_pred ceEEEECCCHHHHHHHHHHHhc-----C-------CcEEEEecHHHHHHHHhcCceeecCCCcceecccceeEeccCh-h
Confidence 4799999999999999988663 5 368888874211000000010 0000000000 001233 4
Q ss_pred HHhccCCcEEEeecCCCCCCCHHHHHHHHcC-CCCcEEEecCCCCCC
Q 007802 404 AVKAIKPTMLMGTSGVGKTFTKEVVEAMASF-NEKPVIFALSNPTSQ 449 (589)
Q Consensus 404 ~V~~vkPtvLIG~S~~~g~Fteevv~~Ma~~-~erPIIFaLSNPt~~ 449 (589)
+++ ++|++|=+.... ..+++++.+..+ .+..+|..+.|....
T Consensus 70 ~~~--~~D~vil~vk~~--~~~~~~~~l~~~~~~~~iii~~~nG~~~ 112 (341)
T PRK08229 70 ALA--TADLVLVTVKSA--ATADAAAALAGHARPGAVVVSFQNGVRN 112 (341)
T ss_pred hcc--CCCEEEEEecCc--chHHHHHHHHhhCCCCCEEEEeCCCCCc
Confidence 454 478777443322 358888888764 455678888887643
No 230
>cd01484 E1-2_like Ubiquitin activating enzyme (E1), repeat 2-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homologou
Probab=70.98 E-value=5.4 Score=40.85 Aligned_cols=32 Identities=28% Similarity=0.451 Sum_probs=28.5
Q ss_pred eEEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEccc
Q 007802 331 TFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSK 373 (589)
Q Consensus 331 riv~~GAGsAg~GiA~ll~~~~~~~~G~s~eeA~~~i~~vD~~ 373 (589)
||+++|+|..|.-+++.|+.. |+ ++|.++|.+
T Consensus 1 kVlvvG~GGlG~eilk~La~~-----Gv------g~i~ivD~D 32 (234)
T cd01484 1 KVLLVGAGGIGCELLKNLALM-----GF------GQIHVIDMD 32 (234)
T ss_pred CEEEECCCHHHHHHHHHHHHc-----CC------CeEEEEeCC
Confidence 689999999999999999764 76 789999998
No 231
>PLN02897 tetrahydrofolate dehydrogenase/cyclohydrolase, putative
Probab=70.93 E-value=16 Score=39.86 Aligned_cols=83 Identities=14% Similarity=0.204 Sum_probs=64.4
Q ss_pred HHHHHHHHHHHHHHhCCCCCCceEEEeCcC-hHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEcccCcccCCcccCCchh
Q 007802 309 ASVVLAGILSALKLVGGTLADQTFLFLGAG-EAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLIVSSRKESLQHF 387 (589)
Q Consensus 309 aaV~lAgll~Alr~~g~~l~d~riv~~GAG-sAg~GiA~ll~~~~~~~~G~s~eeA~~~i~~vD~~GLv~~~r~~~l~~~ 387 (589)
.-+|-.|++.=++-.|.+++++++|++|-+ ..|.-+|.||.. .|. .+.+|.++ .
T Consensus 194 ~PCTp~avi~LL~~~~i~l~GK~vvVIGRS~iVGkPla~LL~~-----~~A-------TVTicHs~-------T------ 248 (345)
T PLN02897 194 VSCTPKGCVELLIRSGVEIAGKNAVVIGRSNIVGLPMSLLLQR-----HDA-------TVSTVHAF-------T------ 248 (345)
T ss_pred cCCCHHHHHHHHHHhCCCCCCCEEEEECCCccccHHHHHHHHH-----CCC-------EEEEEcCC-------C------
Confidence 466778888888999999999999999965 467777777753 242 34555442 1
Q ss_pred chhhhcccCCCCCHHHHHhccCCcEEEeecCCCCCCCHHHHH
Q 007802 388 KKPWAHEHAPIKSLLDAVKAIKPTMLMGTSGVGKTFTKEVVE 429 (589)
Q Consensus 388 k~~fa~~~~~~~~L~e~V~~vkPtvLIG~S~~~g~Fteevv~ 429 (589)
++|.+.+++ +|++|-..+.++.|+.++|+
T Consensus 249 -----------~nl~~~~~~--ADIvIsAvGkp~~v~~d~vk 277 (345)
T PLN02897 249 -----------KDPEQITRK--ADIVIAAAGIPNLVRGSWLK 277 (345)
T ss_pred -----------CCHHHHHhh--CCEEEEccCCcCccCHHHcC
Confidence 357788886 99999999999999999997
No 232
>PRK06932 glycerate dehydrogenase; Provisional
Probab=70.83 E-value=39 Score=35.89 Aligned_cols=137 Identities=15% Similarity=0.202 Sum_probs=82.4
Q ss_pred CCCCCceEEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEcccCcccCCcccCCchhchhhhcccCCCCCHHHH
Q 007802 325 GTLADQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLIVSSRKESLQHFKKPWAHEHAPIKSLLDA 404 (589)
Q Consensus 325 ~~l~d~riv~~GAGsAg~GiA~ll~~~~~~~~G~s~eeA~~~i~~vD~~GLv~~~r~~~l~~~k~~fa~~~~~~~~L~e~ 404 (589)
..|.++++.|+|-|..|-.+|+++.. | |+ +++.+|+..- ... . ....+|.|+
T Consensus 143 ~~l~gktvgIiG~G~IG~~va~~l~~-f----g~-------~V~~~~~~~~------~~~---~-------~~~~~l~el 194 (314)
T PRK06932 143 TDVRGSTLGVFGKGCLGTEVGRLAQA-L----GM-------KVLYAEHKGA------SVC---R-------EGYTPFEEV 194 (314)
T ss_pred cccCCCEEEEECCCHHHHHHHHHHhc-C----CC-------EEEEECCCcc------ccc---c-------cccCCHHHH
Confidence 46889999999999999999998743 2 65 4666665310 000 0 113479999
Q ss_pred HhccCCcEEEee----cCCCCCCCHHHHHHHHcCCCCcEEEecCCCCCCCCCCHHHHhc--cccCcEEEeeCCCCC--cc
Q 007802 405 VKAIKPTMLMGT----SGVGKTFTKEVVEAMASFNEKPVIFALSNPTSQSECTAEEAYT--WSKGQAIFASGSPFD--PV 476 (589)
Q Consensus 405 V~~vkPtvLIG~----S~~~g~Fteevv~~Ma~~~erPIIFaLSNPt~~~E~t~eda~~--wT~GraifAsGSPf~--pv 476 (589)
++. .|+++=. ....|.|+++.+..|. +..++.=.|. .++--|+|+. ..+|+.-.|.--=|+ |.
T Consensus 195 l~~--sDiv~l~~Plt~~T~~li~~~~l~~mk---~ga~lIN~aR----G~~Vde~AL~~aL~~g~i~gAaLDV~~~EP~ 265 (314)
T PRK06932 195 LKQ--ADIVTLHCPLTETTQNLINAETLALMK---PTAFLINTGR----GPLVDEQALLDALENGKIAGAALDVLVKEPP 265 (314)
T ss_pred HHh--CCEEEEcCCCChHHhcccCHHHHHhCC---CCeEEEECCC----ccccCHHHHHHHHHcCCccEEEEecCCCCCC
Confidence 987 8988832 2224799999999995 5667776655 4454444442 135666544332221 11
Q ss_pred eeCCeeeC--CCCccccccchhhhH
Q 007802 477 EYNGKVFV--PGQGNNAYIFPGLGL 499 (589)
Q Consensus 477 ~~~G~~~~--p~Q~NN~~iFPGigl 499 (589)
..+. .+. --+..|+++-|=+|-
T Consensus 266 ~~~~-pl~~~~~~~pnvilTPHia~ 289 (314)
T PRK06932 266 EKDN-PLIQAAKRLPNLLITPHIAW 289 (314)
T ss_pred CCCC-hhhHhhcCCCCEEECCcccc
Confidence 1111 010 013568888887763
No 233
>PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase
Probab=70.80 E-value=14 Score=45.61 Aligned_cols=102 Identities=13% Similarity=0.169 Sum_probs=53.7
Q ss_pred CCceEEEeCcChHHHHHHHHHHHHHHhccCCCHHhhc------------Ce---EEE--EcccCcc-cCCcccCCchhch
Q 007802 328 ADQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEAR------------KK---IWL--VDSKGLI-VSSRKESLQHFKK 389 (589)
Q Consensus 328 ~d~riv~~GAGsAg~GiA~ll~~~~~~~~G~s~eeA~------------~~---i~~--vD~~GLv-~~~r~~~l~~~k~ 389 (589)
.--+|||.|+|..|.|.++.+...-.+ =++.++-+ ++ +|- +.+.-.+ +++... -=+.+.
T Consensus 202 ~P~~vVi~G~G~Vg~gA~~i~~~lg~~--~v~~~~l~~l~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~-~f~~~~ 278 (1042)
T PLN02819 202 CPLVFVFTGSGNVSQGAQEIFKLLPHT--FVEPSKLPELKGISQNKISTKRVYQVYGCVVTSQDMVEHKDPSK-QFDKAD 278 (1042)
T ss_pred CCeEEEEeCCchHHHHHHHHHhhcCCC--ccCHHHHHHHHHhhcCCccccccceeeeeecChHHHhhccCCcc-ccchhh
Confidence 358999999999999999987543111 02222211 11 220 1111111 111000 011223
Q ss_pred hhhcccCCCCCHH-HHHhccCCcEEEeec----CCCCCCCHH-HHHHHHcC
Q 007802 390 PWAHEHAPIKSLL-DAVKAIKPTMLMGTS----GVGKTFTKE-VVEAMASF 434 (589)
Q Consensus 390 ~fa~~~~~~~~L~-e~V~~vkPtvLIG~S----~~~g~Ftee-vv~~Ma~~ 434 (589)
.|+++..-...+. +++.. .|+|||+- ..|.++|++ +++.|.+.
T Consensus 279 y~~~Pe~y~s~F~~~~~~~--advlIn~i~~~~~~P~lvt~~~~~~~mk~G 327 (1042)
T PLN02819 279 YYAHPEHYNPVFHEKIAPY--ASVIVNCMYWEKRFPRLLTTKQLQDLTRKG 327 (1042)
T ss_pred hccCchhccchhHHHhHhh--CCEEEeeeecCCCCCceeCHHHHHHhhcCC
Confidence 3444322224454 67776 99999984 345679999 88888643
No 234
>COG0039 Mdh Malate/lactate dehydrogenases [Energy production and conversion]
Probab=70.33 E-value=12 Score=40.12 Aligned_cols=108 Identities=20% Similarity=0.361 Sum_probs=67.8
Q ss_pred ceEEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEccc-CcccCCcccCCchhchhhhcccCCC---CCHHHHH
Q 007802 330 QTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSK-GLIVSSRKESLQHFKKPWAHEHAPI---KSLLDAV 405 (589)
Q Consensus 330 ~riv~~GAGsAg~GiA~ll~~~~~~~~G~s~eeA~~~i~~vD~~-GLv~~~r~~~l~~~k~~fa~~~~~~---~~L~e~V 405 (589)
.||.++|||..|-..|-+|+. .++. +.+.|+|.. +...-... +|.+-. .+....... .+ .+.+
T Consensus 1 ~KVaviGaG~VG~s~a~~l~~-----~~~~-----~el~LiDi~~~~~~G~a~-DL~~~~-~~~~~~~~i~~~~~-y~~~ 67 (313)
T COG0039 1 MKVAVIGAGNVGSSLAFLLLL-----QGLG-----SELVLIDINEEKAEGVAL-DLSHAA-APLGSDVKITGDGD-YEDL 67 (313)
T ss_pred CeEEEECCChHHHHHHHHHhc-----cccc-----ceEEEEEcccccccchhc-chhhcc-hhccCceEEecCCC-hhhh
Confidence 389999999999999888833 3552 479999987 22111111 132211 121110111 23 3556
Q ss_pred hccCCcEEEeecCCC---C-----------CCCHHHHHHHHcCCCCcEEEecCCCCCCCCCCHHHHhcc
Q 007802 406 KAIKPTMLMGTSGVG---K-----------TFTKEVVEAMASFNEKPVIFALSNPTSQSECTAEEAYTW 460 (589)
Q Consensus 406 ~~vkPtvLIG~S~~~---g-----------~Fteevv~~Ma~~~erPIIFaLSNPt~~~E~t~eda~~w 460 (589)
+. .|+.|=+.+.| | -.-+++.+++++.+...||+-.|||. |...|
T Consensus 68 ~~--aDiVvitAG~prKpGmtR~DLl~~Na~I~~~i~~~i~~~~~d~ivlVvtNPv--------D~~ty 126 (313)
T COG0039 68 KG--ADIVVITAGVPRKPGMTRLDLLEKNAKIVKDIAKAIAKYAPDAIVLVVTNPV--------DILTY 126 (313)
T ss_pred cC--CCEEEEeCCCCCCCCCCHHHHHHhhHHHHHHHHHHHHhhCCCeEEEEecCcH--------HHHHH
Confidence 65 78777444443 4 13467889999999999999999999 77766
No 235
>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=69.79 E-value=14 Score=38.92 Aligned_cols=126 Identities=20% Similarity=0.298 Sum_probs=71.8
Q ss_pred eEEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEcccCcccCCcccCCchhchhhhcccC-CCCCHHHHHhccC
Q 007802 331 TFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLIVSSRKESLQHFKKPWAHEHA-PIKSLLDAVKAIK 409 (589)
Q Consensus 331 riv~~GAGsAg~GiA~ll~~~~~~~~G~s~eeA~~~i~~vD~~GLv~~~r~~~l~~~k~~fa~~~~-~~~~L~e~V~~vk 409 (589)
||.|+|+|..|..+|-.+.. .|+ ...++++|.+-=...+...++.+. .+|-.... ...+. +.++.
T Consensus 2 kI~IIGaG~VG~~~a~~l~~-----~g~-----~~ev~l~D~~~~~~~g~a~dl~~~-~~~~~~~~i~~~d~-~~l~~-- 67 (308)
T cd05292 2 KVAIVGAGFVGSTTAYALLL-----RGL-----ASEIVLVDINKAKAEGEAMDLAHG-TPFVKPVRIYAGDY-ADCKG-- 67 (308)
T ss_pred EEEEECCCHHHHHHHHHHHH-----cCC-----CCEEEEEECCchhhhhHHHHHHcc-ccccCCeEEeeCCH-HHhCC--
Confidence 79999999999999987764 265 367999997411011100012211 11211100 01344 45665
Q ss_pred CcEEEeecCCCCCC--------------CHHHHHHHHcCCCCcEEEecCCCCCCCCCCHHHHhcccc--CcEEEeeCCCC
Q 007802 410 PTMLMGTSGVGKTF--------------TKEVVEAMASFNEKPVIFALSNPTSQSECTAEEAYTWSK--GQAIFASGSPF 473 (589)
Q Consensus 410 PtvLIG~S~~~g~F--------------teevv~~Ma~~~erPIIFaLSNPt~~~E~t~eda~~wT~--GraifAsGSPf 473 (589)
.|+.|=+.+.+..- =+++++.+.+++..-+|+-.+||. +....-+++.++ -+-+|++|.-.
T Consensus 68 aDiViita~~~~~~~~~r~dl~~~n~~i~~~~~~~l~~~~~~giiiv~tNP~---d~~~~~~~~~sg~p~~~viG~gt~L 144 (308)
T cd05292 68 ADVVVITAGANQKPGETRLDLLKRNVAIFKEIIPQILKYAPDAILLVVTNPV---DVLTYVAYKLSGLPPNRVIGSGTVL 144 (308)
T ss_pred CCEEEEccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcH---HHHHHHHHHHHCcCHHHeecccchh
Confidence 77776444433111 146888888899999999999996 455555555541 12366666443
No 236
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=69.77 E-value=6.5 Score=42.23 Aligned_cols=36 Identities=17% Similarity=0.325 Sum_probs=28.1
Q ss_pred CCceEEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEccc
Q 007802 328 ADQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSK 373 (589)
Q Consensus 328 ~d~riv~~GAGsAg~GiA~ll~~~~~~~~G~s~eeA~~~i~~vD~~ 373 (589)
+..||||+|+|.||+..|+.|.+. |. ..+|.++|..
T Consensus 2 ~~~~vvIIGgG~AG~~aA~~Lr~~-----~~-----~~~I~li~~e 37 (396)
T PRK09754 2 KEKTIIIVGGGQAAAMAAASLRQQ-----GF-----TGELHLFSDE 37 (396)
T ss_pred CcCcEEEECChHHHHHHHHHHHhh-----CC-----CCCEEEeCCC
Confidence 567899999999999999988653 43 2468888765
No 237
>COG0345 ProC Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism]
Probab=69.56 E-value=27 Score=36.69 Aligned_cols=105 Identities=13% Similarity=0.207 Sum_probs=59.1
Q ss_pred ceEEEeCcChHHHHHHHHHHHHHHhccC-CCHHhhcCeEEEEcccCcccCCcccCCchhchhhhcccCCCCCHHHHHhcc
Q 007802 330 QTFLFLGAGEAGTGIAELIALEMSKQTK-APIEEARKKIWLVDSKGLIVSSRKESLQHFKKPWAHEHAPIKSLLDAVKAI 408 (589)
Q Consensus 330 ~riv~~GAGsAg~GiA~ll~~~~~~~~G-~s~eeA~~~i~~vD~~GLv~~~r~~~l~~~k~~fa~~~~~~~~L~e~V~~v 408 (589)
.||.|+|+|..|-.|+.-|+.. | +. ..+|++.|+. .+........|--. ...+..++++.
T Consensus 2 ~~IgfIG~G~Mg~Ai~~gl~~~-----g~~~----~~~I~v~~~~-------~e~~~~l~~~~g~~--~~~~~~~~~~~- 62 (266)
T COG0345 2 MKIGFIGAGNMGEAILSGLLKS-----GALP----PEEIIVTNRS-------EEKRAALAAEYGVV--TTTDNQEAVEE- 62 (266)
T ss_pred ceEEEEccCHHHHHHHHHHHhc-----CCCC----cceEEEeCCC-------HHHHHHHHHHcCCc--ccCcHHHHHhh-
Confidence 5899999999998888777653 5 32 3678877764 11122233334211 13455666664
Q ss_pred CCcEEEeecCCCCCCCHHHHHHHHcCCCCcEEEecCCCCCCCCCCHHHHhccc
Q 007802 409 KPTMLMGTSGVGKTFTKEVVEAMASFNEKPVIFALSNPTSQSECTAEEAYTWS 461 (589)
Q Consensus 409 kPtvLIG~S~~~g~Fteevv~~Ma~~~erPIIFaLSNPt~~~E~t~eda~~wT 461 (589)
.|+++ ++-.|- .=+++++.+....+..+|..+.=.+ +.++.-+|.
T Consensus 63 -advv~-LavKPq-~~~~vl~~l~~~~~~~lvISiaAGv-----~~~~l~~~l 107 (266)
T COG0345 63 -ADVVF-LAVKPQ-DLEEVLSKLKPLTKDKLVISIAAGV-----SIETLERLL 107 (266)
T ss_pred -CCEEE-EEeChH-hHHHHHHHhhcccCCCEEEEEeCCC-----CHHHHHHHc
Confidence 66666 554442 3345666665444555665554333 445555554
No 238
>PRK06823 ornithine cyclodeaminase; Validated
Probab=69.03 E-value=30 Score=36.91 Aligned_cols=105 Identities=11% Similarity=0.149 Sum_probs=66.4
Q ss_pred CCceEEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEcccCcccCCcccCCchhchhhhccc---CCCCCHHHH
Q 007802 328 ADQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLIVSSRKESLQHFKKPWAHEH---APIKSLLDA 404 (589)
Q Consensus 328 ~d~riv~~GAGsAg~GiA~ll~~~~~~~~G~s~eeA~~~i~~vD~~GLv~~~r~~~l~~~k~~fa~~~---~~~~~L~e~ 404 (589)
.-.++.++|+|.-+...++.++.. + .+ ++|+++|+. .++ ...+...+.+.. ....+..|+
T Consensus 127 d~~~l~iiG~G~qA~~~~~a~~~v--~--~i------~~v~v~~r~----~~~---a~~~~~~~~~~~~~v~~~~~~~~a 189 (315)
T PRK06823 127 HVSAIGIVGTGIQARMQLMYLKNV--T--DC------RQLWVWGRS----ETA---LEEYRQYAQALGFAVNTTLDAAEV 189 (315)
T ss_pred CCCEEEEECCcHHHHHHHHHHHhc--C--CC------CEEEEECCC----HHH---HHHHHHHHHhcCCcEEEECCHHHH
Confidence 457999999999888887776553 1 22 788888774 222 222222221111 113689999
Q ss_pred HhccCCcEEEeecC-CCCCCCHHHHHHHHcCCCCcEEEecCCCC-CCCCCCHHHH
Q 007802 405 VKAIKPTMLMGTSG-VGKTFTKEVVEAMASFNEKPVIFALSNPT-SQSECTAEEA 457 (589)
Q Consensus 405 V~~vkPtvLIG~S~-~~g~Fteevv~~Ma~~~erPIIFaLSNPt-~~~E~t~eda 457 (589)
++. .|+++-+.+ ...+|..+.++ +.-.|-+...-+ .+.|+.++-.
T Consensus 190 v~~--ADIV~taT~s~~P~~~~~~l~------~G~hi~~iGs~~p~~~Eld~~~l 236 (315)
T PRK06823 190 AHA--ANLIVTTTPSREPLLQAEDIQ------PGTHITAVGADSPGKQELDAELV 236 (315)
T ss_pred hcC--CCEEEEecCCCCceeCHHHcC------CCcEEEecCCCCcccccCCHHHH
Confidence 986 999997643 23478888776 455677776433 4789998654
No 239
>PRK07877 hypothetical protein; Provisional
Probab=68.80 E-value=9.4 Score=45.29 Aligned_cols=101 Identities=20% Similarity=0.182 Sum_probs=64.1
Q ss_pred CCCCCceEEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEcccCcccCCcccCCch----------hchhhhcc
Q 007802 325 GTLADQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLIVSSRKESLQH----------FKKPWAHE 394 (589)
Q Consensus 325 ~~l~d~riv~~GAGsAg~GiA~ll~~~~~~~~G~s~eeA~~~i~~vD~~GLv~~~r~~~l~~----------~k~~fa~~ 394 (589)
.+|++.||+|+|+| .|.-+|..|+.+ |+ ..+|.++|-+=+=.. +|+. .|..-|+.
T Consensus 103 ~~L~~~~V~IvG~G-lGs~~a~~Lara-----Gv-----vG~l~lvD~D~ve~s----NLnRq~~~~~diG~~Kv~~a~~ 167 (722)
T PRK07877 103 ERLGRLRIGVVGLS-VGHAIAHTLAAE-----GL-----CGELRLADFDTLELS----NLNRVPAGVFDLGVNKAVVAAR 167 (722)
T ss_pred HHHhcCCEEEEEec-HHHHHHHHHHHc-----cC-----CCeEEEEcCCEEccc----ccccccCChhhcccHHHHHHHH
Confidence 57899999999998 898999888764 63 268999998833211 2433 12111110
Q ss_pred -----cCC---------C--CCHHHHHhccCCcEEEeecCCCCCCCHHHHHHHHcCCCCcEEEecC
Q 007802 395 -----HAP---------I--KSLLDAVKAIKPTMLMGTSGVGKTFTKEVVEAMASFNEKPVIFALS 444 (589)
Q Consensus 395 -----~~~---------~--~~L~e~V~~vkPtvLIG~S~~~g~Fteevv~~Ma~~~erPIIFaLS 444 (589)
.+. + .++.+.++. .|++|-++- +.=++-+|...|.....|+|++-+
T Consensus 168 ~l~~inp~i~v~~~~~~i~~~n~~~~l~~--~DlVvD~~D--~~~~R~~ln~~a~~~~iP~i~~~~ 229 (722)
T PRK07877 168 RIAELDPYLPVEVFTDGLTEDNVDAFLDG--LDVVVEECD--SLDVKVLLREAARARRIPVLMATS 229 (722)
T ss_pred HHHHHCCCCEEEEEeccCCHHHHHHHhcC--CCEEEECCC--CHHHHHHHHHHHHHcCCCEEEEcC
Confidence 011 1 146566654 677776654 233666777777777888888774
No 240
>PLN02520 bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase
Probab=68.61 E-value=11 Score=42.98 Aligned_cols=38 Identities=29% Similarity=0.471 Sum_probs=27.9
Q ss_pred CCCCCCceEEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEccc
Q 007802 324 GGTLADQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSK 373 (589)
Q Consensus 324 g~~l~d~riv~~GAGsAg~GiA~ll~~~~~~~~G~s~eeA~~~i~~vD~~ 373 (589)
+..+++.+++|+|||.+|.+|+..|.+ .| + +|+++|+.
T Consensus 374 ~~~~~~k~vlIlGaGGagrAia~~L~~-----~G-----~--~V~i~nR~ 411 (529)
T PLN02520 374 GSPLAGKLFVVIGAGGAGKALAYGAKE-----KG-----A--RVVIANRT 411 (529)
T ss_pred ccCCCCCEEEEECCcHHHHHHHHHHHH-----CC-----C--EEEEEcCC
Confidence 446889999999999777777666643 35 2 68888873
No 241
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=68.57 E-value=5.6 Score=37.69 Aligned_cols=30 Identities=20% Similarity=0.364 Sum_probs=20.7
Q ss_pred EEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEccc
Q 007802 333 LFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSK 373 (589)
Q Consensus 333 v~~GAGsAg~GiA~ll~~~~~~~~G~s~eeA~~~i~~vD~~ 373 (589)
+|+|||.||+..|-.|.+ .|+ +++.++|+.
T Consensus 1 ~IIGaG~aGl~~a~~l~~-----~g~------~~v~v~e~~ 30 (203)
T PF13738_consen 1 VIIGAGPAGLAAAAHLLE-----RGI------DPVVVLERN 30 (203)
T ss_dssp EEE--SHHHHHHHHHHHH-----TT---------EEEEESS
T ss_pred CEECcCHHHHHHHHHHHh-----CCC------CcEEEEeCC
Confidence 689999999999987754 375 348889987
No 242
>cd01488 Uba3_RUB Ubiquitin activating enzyme (E1) subunit UBA3. UBA3 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins. consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. UBA3 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.
Probab=68.44 E-value=6.2 Score=41.81 Aligned_cols=32 Identities=28% Similarity=0.502 Sum_probs=28.7
Q ss_pred eEEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEccc
Q 007802 331 TFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSK 373 (589)
Q Consensus 331 riv~~GAGsAg~GiA~ll~~~~~~~~G~s~eeA~~~i~~vD~~ 373 (589)
||+++|+|.-|.-+++.|+.. |+ ++|.++|.+
T Consensus 1 kVlVVGaGGlG~eilknLal~-----Gv------g~I~IvD~D 32 (291)
T cd01488 1 KILVIGAGGLGCELLKNLALS-----GF------RNIHVIDMD 32 (291)
T ss_pred CEEEECCCHHHHHHHHHHHHc-----CC------CeEEEECCC
Confidence 689999999999999999774 87 699999987
No 243
>PLN02602 lactate dehydrogenase
Probab=68.42 E-value=16 Score=39.57 Aligned_cols=123 Identities=19% Similarity=0.311 Sum_probs=75.5
Q ss_pred ceEEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEcccCcccCCcccCCchhchhhhcccCCC---CCHHHHHh
Q 007802 330 QTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLIVSSRKESLQHFKKPWAHEHAPI---KSLLDAVK 406 (589)
Q Consensus 330 ~riv~~GAGsAg~GiA~ll~~~~~~~~G~s~eeA~~~i~~vD~~GLv~~~r~~~l~~~k~~fa~~~~~~---~~L~e~V~ 406 (589)
.||.|+|||..|..+|-.|+. .|+ ...|.|+|.+-=..++-.-+|.+.. +|-.. ..+ .+.++ ++
T Consensus 38 ~KI~IIGaG~VG~~~a~~l~~-----~~l-----~~el~LiDi~~~~~~g~a~DL~~~~-~~~~~-~~i~~~~dy~~-~~ 104 (350)
T PLN02602 38 TKVSVVGVGNVGMAIAQTILT-----QDL-----ADELALVDVNPDKLRGEMLDLQHAA-AFLPR-TKILASTDYAV-TA 104 (350)
T ss_pred CEEEEECCCHHHHHHHHHHHh-----CCC-----CCEEEEEeCCCchhhHHHHHHHhhh-hcCCC-CEEEeCCCHHH-hC
Confidence 499999999999999997764 365 3679999974211111111233222 22211 111 24544 66
Q ss_pred ccCCcEEEeecCCC---CCCCH------------HHHHHHHcCCCCcEEEecCCCCCCCCCCHHHHhcccc--CcEEEee
Q 007802 407 AIKPTMLMGTSGVG---KTFTK------------EVVEAMASFNEKPVIFALSNPTSQSECTAEEAYTWSK--GQAIFAS 469 (589)
Q Consensus 407 ~vkPtvLIG~S~~~---g~Fte------------evv~~Ma~~~erPIIFaLSNPt~~~E~t~eda~~wT~--GraifAs 469 (589)
. .|++|=+.+.+ | -|. ++++.|.+++..-+|+-.|||. .....-+++++. =+-+|++
T Consensus 105 d--aDiVVitAG~~~k~g-~tR~dll~~N~~I~~~i~~~I~~~~p~~ivivvtNPv---dv~t~~~~k~sg~p~~rviG~ 178 (350)
T PLN02602 105 G--SDLCIVTAGARQIPG-ESRLNLLQRNVALFRKIIPELAKYSPDTILLIVSNPV---DVLTYVAWKLSGFPANRVIGS 178 (350)
T ss_pred C--CCEEEECCCCCCCcC-CCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCch---HHHHHHHHHHhCCCHHHEEee
Confidence 5 89888665543 3 343 7888899999999999999997 344445555542 1336666
Q ss_pred CC
Q 007802 470 GS 471 (589)
Q Consensus 470 GS 471 (589)
|.
T Consensus 179 gt 180 (350)
T PLN02602 179 GT 180 (350)
T ss_pred cc
Confidence 63
No 244
>TIGR00873 gnd 6-phosphogluconate dehydrogenase, decarboxylating. This model does not specify whether the cofactor is NADP only (EC 1.1.1.44), NAD only, or both. The model does not assign an EC number for that reason.
Probab=68.34 E-value=14 Score=41.57 Aligned_cols=95 Identities=14% Similarity=0.164 Sum_probs=61.3
Q ss_pred eEEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEcccCcccCCcccCCchhchhhhcc--cCCCCCHHHHHhcc
Q 007802 331 TFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLIVSSRKESLQHFKKPWAHE--HAPIKSLLDAVKAI 408 (589)
Q Consensus 331 riv~~GAGsAg~GiA~ll~~~~~~~~G~s~eeA~~~i~~vD~~GLv~~~r~~~l~~~k~~fa~~--~~~~~~L~e~V~~v 408 (589)
.|-|+|.|..|..+|..|... |. +++++|+. .. .....++.+... .....++.|+++.+
T Consensus 1 ~IG~IGLG~MG~~mA~nL~~~-----G~-------~V~v~drt----~~---~~~~l~~~~~~g~~~~~~~s~~e~v~~l 61 (467)
T TIGR00873 1 DIGVIGLAVMGSNLALNMADH-----GF-------TVSVYNRT----PE---KTDEFLAEHAKGKKIVGAYSIEEFVQSL 61 (467)
T ss_pred CEEEEeeHHHHHHHHHHHHhc-----CC-------eEEEEeCC----HH---HHHHHHhhccCCCCceecCCHHHHHhhc
Confidence 377999999999999998653 63 57777764 11 122222221110 11235788888654
Q ss_pred -CCcEEEeecCCCCCCCHHHHHHHHcC-CCCcEEEecCC
Q 007802 409 -KPTMLMGTSGVGKTFTKEVVEAMASF-NEKPVIFALSN 445 (589)
Q Consensus 409 -kPtvLIG~S~~~g~Fteevv~~Ma~~-~erPIIFaLSN 445 (589)
+|+++| ++-.++...+++++.+..+ .+.-||.=.||
T Consensus 62 ~~~dvIi-l~v~~~~~v~~Vi~~l~~~L~~g~iIID~gn 99 (467)
T TIGR00873 62 ERPRKIM-LMVKAGAPVDAVINQLLPLLEKGDIIIDGGN 99 (467)
T ss_pred CCCCEEE-EECCCcHHHHHHHHHHHhhCCCCCEEEECCC
Confidence 588666 4555566778888887654 56779998988
No 245
>PRK12439 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=68.18 E-value=12 Score=39.85 Aligned_cols=22 Identities=32% Similarity=0.524 Sum_probs=19.5
Q ss_pred CceEEEeCcChHHHHHHHHHHH
Q 007802 329 DQTFLFLGAGEAGTGIAELIAL 350 (589)
Q Consensus 329 d~riv~~GAGsAg~GiA~ll~~ 350 (589)
..||.|+|+|+-|..+|..+..
T Consensus 7 ~mkI~IiGaGa~G~alA~~La~ 28 (341)
T PRK12439 7 EPKVVVLGGGSWGTTVASICAR 28 (341)
T ss_pred CCeEEEECCCHHHHHHHHHHHH
Confidence 3789999999999999998865
No 246
>PLN02527 aspartate carbamoyltransferase
Probab=67.61 E-value=1.2e+02 Score=32.45 Aligned_cols=137 Identities=16% Similarity=0.215 Sum_probs=79.1
Q ss_pred HHHHHHHHHhcCCceeeEeecCCCccHHHHHHHHcCCCceec--cCCCchHHHHHHHHHHHHHHhCCCCCCceEEEeCcC
Q 007802 261 QEFMTAVKQNYGEKVLIQFEDFANHNAFELLSKYSSSHLVFN--DDIQGTASVVLAGILSALKLVGGTLADQTFLFLGAG 338 (589)
Q Consensus 261 defv~av~~~fGp~~lIq~EDf~~~~Af~iL~ryr~~~~~Fn--DDiQGTaaV~lAgll~Alr~~g~~l~d~riv~~GAG 338 (589)
.+.+..+ .+| .++ |=.-.+......++ .+| .++|+.| |+...=-+=+||=++.-.+..| ++++.||+++|.+
T Consensus 87 ~Dta~vl-s~y-~D~-iviR~~~~~~~~~~-a~~-~~vPVINa~~g~~~HPtQ~LaDl~Ti~e~~g-~l~g~kva~vGD~ 160 (306)
T PLN02527 87 EDTIRTV-EGY-SDI-IVLRHFESGAARRA-AAT-AEIPVINAGDGPGQHPTQALLDVYTIQREIG-RLDGIKVGLVGDL 160 (306)
T ss_pred HHHHHHH-HHh-CcE-EEEECCChhHHHHH-HHh-CCCCEEECCCCCCCChHHHHHHHHHHHHHhC-CcCCCEEEEECCC
Confidence 3444433 345 333 33444544443333 343 4789999 4344444556777777666666 5999999999988
Q ss_pred hHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEcccCcccCCcccCCchhchhhhccc-CC---CCCHHHHHhccCCcEEE
Q 007802 339 EAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLIVSSRKESLQHFKKPWAHEH-AP---IKSLLDAVKAIKPTMLM 414 (589)
Q Consensus 339 sAg~GiA~ll~~~~~~~~G~s~eeA~~~i~~vD~~GLv~~~r~~~l~~~k~~fa~~~-~~---~~~L~e~V~~vkPtvLI 414 (589)
.=+ -+++-++.++.+-.|+ .|.++-.+|+- +++....++++. .. ..++.|+++. .||+.
T Consensus 161 ~~~-rv~~Sl~~~~~~~~g~-------~v~~~~P~~~~-------~~~~~~~~~~~~g~~~~~~~d~~~a~~~--aDvvy 223 (306)
T PLN02527 161 ANG-RTVRSLAYLLAKYEDV-------KIYFVAPDVVK-------MKDDIKDYLTSKGVEWEESSDLMEVASK--CDVLY 223 (306)
T ss_pred CCC-hhHHHHHHHHHhcCCC-------EEEEECCCccC-------CCHHHHHHHHHcCCEEEEEcCHHHHhCC--CCEEE
Confidence 432 2455544444331243 58888887761 222222334321 11 2689999997 99999
Q ss_pred eecCCC
Q 007802 415 GTSGVG 420 (589)
Q Consensus 415 G~S~~~ 420 (589)
-.+.+.
T Consensus 224 t~~~q~ 229 (306)
T PLN02527 224 QTRIQR 229 (306)
T ss_pred ECCcch
Confidence 877653
No 247
>PRK13938 phosphoheptose isomerase; Provisional
Probab=67.55 E-value=33 Score=34.27 Aligned_cols=104 Identities=14% Similarity=0.126 Sum_probs=51.5
Q ss_pred CCceEEEeCcChHHHHHHHHHHHHHHhccCCCHHh-hcCeEEEEcccCcccCCcccCCchhchhhhcccCCCCCHHHHHh
Q 007802 328 ADQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEE-ARKKIWLVDSKGLIVSSRKESLQHFKKPWAHEHAPIKSLLDAVK 406 (589)
Q Consensus 328 ~d~riv~~GAGsAg~GiA~ll~~~~~~~~G~s~ee-A~~~i~~vD~~GLv~~~r~~~l~~~k~~fa~~~~~~~~L~e~V~ 406 (589)
++.||.|+|.|..| -+|..+..-|.. +++.+- +-..+-+......++.-- . =..+-..|++. +.-.+
T Consensus 44 ~g~rI~i~G~G~S~-~~A~~fa~~L~~--~~~~~r~~lg~~~l~~~~~~~~a~~-n-d~~~~~~~~~~------~~~~~- 111 (196)
T PRK13938 44 AGARVFMCGNGGSA-ADAQHFAAELTG--HLIFDRPPLGAEALHANSSHLTAVA-N-DYDYDTVFARA------LEGSA- 111 (196)
T ss_pred CCCEEEEEeCcHHH-HHHHHHHHHcCC--CccCCcCccceEEEeCChHHHHHhh-c-cccHHHHHHHH------HHhcC-
Confidence 77999999999987 466666665532 111100 001122211111111000 0 01122233321 22222
Q ss_pred ccCCcEEEeecCCCCCCCHHHHHHHH--cCCCCcEEEecCCC
Q 007802 407 AIKPTMLMGTSGVGKTFTKEVVEAMA--SFNEKPVIFALSNP 446 (589)
Q Consensus 407 ~vkPtvLIG~S~~~g~Fteevv~~Ma--~~~erPIIFaLSNP 446 (589)
-+-|++|++|..|. |+++++.+. +...-|+|.=-+||
T Consensus 112 -~~~DllI~iS~SG~--t~~vi~a~~~Ak~~G~~vI~iT~~~ 150 (196)
T PRK13938 112 -RPGDTLFAISTSGN--SMSVLRAAKTARELGVTVVAMTGES 150 (196)
T ss_pred -CCCCEEEEEcCCCC--CHHHHHHHHHHHHCCCEEEEEeCCC
Confidence 35789999999774 999998875 33344444433333
No 248
>PRK15409 bifunctional glyoxylate/hydroxypyruvate reductase B; Provisional
Probab=67.51 E-value=55 Score=35.04 Aligned_cols=141 Identities=16% Similarity=0.193 Sum_probs=80.5
Q ss_pred CCCCCCceEEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEcccCcccCCcccCCchhchhhhcccCCCCCHHH
Q 007802 324 GGTLADQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLIVSSRKESLQHFKKPWAHEHAPIKSLLD 403 (589)
Q Consensus 324 g~~l~d~riv~~GAGsAg~GiA~ll~~~~~~~~G~s~eeA~~~i~~vD~~GLv~~~r~~~l~~~k~~fa~~~~~~~~L~e 403 (589)
|..|.++++.|+|.|..|..+|+.+..++ |+ ++...|+.. . . +....+ .....+|.|
T Consensus 140 g~~L~gktvGIiG~G~IG~~va~~l~~~f----gm-------~V~~~~~~~---~---~---~~~~~~---~~~~~~l~e 196 (323)
T PRK15409 140 GTDVHHKTLGIVGMGRIGMALAQRAHFGF----NM-------PILYNARRH---H---K---EAEERF---NARYCDLDT 196 (323)
T ss_pred cCCCCCCEEEEEcccHHHHHHHHHHHhcC----CC-------EEEEECCCC---c---h---hhHHhc---CcEecCHHH
Confidence 45689999999999999999999875232 54 355566531 0 0 000011 112247999
Q ss_pred HHhccCCcEEEeec----CCCCCCCHHHHHHHHcCCCCcEEEecCCCCCCCCCCHHHHhc-c-ccCcEEEeeCCCCC--c
Q 007802 404 AVKAIKPTMLMGTS----GVGKTFTKEVVEAMASFNEKPVIFALSNPTSQSECTAEEAYT-W-SKGQAIFASGSPFD--P 475 (589)
Q Consensus 404 ~V~~vkPtvLIG~S----~~~g~Fteevv~~Ma~~~erPIIFaLSNPt~~~E~t~eda~~-w-T~GraifAsGSPf~--p 475 (589)
+++. .|+++=.- ...|.|+++.++.|. +.-++.=.|. .++--|+|+. + .+|+.-.|.=-=|+ |
T Consensus 197 ll~~--sDvv~lh~plt~~T~~li~~~~l~~mk---~ga~lIN~aR----G~vVde~AL~~AL~~g~i~gAaLDVf~~EP 267 (323)
T PRK15409 197 LLQE--SDFVCIILPLTDETHHLFGAEQFAKMK---SSAIFINAGR----GPVVDENALIAALQKGEIHAAGLDVFEQEP 267 (323)
T ss_pred HHHh--CCEEEEeCCCChHHhhccCHHHHhcCC---CCeEEEECCC----ccccCHHHHHHHHHcCCeeEEEeecCCCCC
Confidence 9986 88876321 112789999999995 4556665544 5555554442 1 46666443221121 1
Q ss_pred ceeCCeeeCCCCccccccchhhhH
Q 007802 476 VEYNGKVFVPGQGNNAYIFPGLGL 499 (589)
Q Consensus 476 v~~~G~~~~p~Q~NN~~iFPGigl 499 (589)
...+. . -=...|+.+-|=+|-
T Consensus 268 ~~~~~-p--L~~~~nvilTPHia~ 288 (323)
T PRK15409 268 LSVDS-P--LLSLPNVVAVPHIGS 288 (323)
T ss_pred CCCCc-h--hhcCCCEEEcCcCCC
Confidence 10010 0 113458888887763
No 249
>PTZ00142 6-phosphogluconate dehydrogenase; Provisional
Probab=67.48 E-value=16 Score=41.12 Aligned_cols=97 Identities=16% Similarity=0.201 Sum_probs=62.6
Q ss_pred ceEEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEcccCcccCCcccCCchhchhhhccc---CCCCCHHHHHh
Q 007802 330 QTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLIVSSRKESLQHFKKPWAHEH---APIKSLLDAVK 406 (589)
Q Consensus 330 ~riv~~GAGsAg~GiA~ll~~~~~~~~G~s~eeA~~~i~~vD~~GLv~~~r~~~l~~~k~~fa~~~---~~~~~L~e~V~ 406 (589)
.+|-|+|.|..|.++|..|... |. +++++|++ .++ ..+..+.-.... ....++.|+++
T Consensus 2 ~~IgvIGLG~MG~~lA~nL~~~-----G~-------~V~v~dr~----~~~---~~~l~~~~~~~g~~i~~~~s~~e~v~ 62 (470)
T PTZ00142 2 SDIGLIGLAVMGQNLALNIASR-----GF-------KISVYNRT----YEK---TEEFVKKAKEGNTRVKGYHTLEELVN 62 (470)
T ss_pred CEEEEEeEhHHHHHHHHHHHHC-----CC-------eEEEEeCC----HHH---HHHHHHhhhhcCCcceecCCHHHHHh
Confidence 3689999999999999998653 64 58888873 221 111111100001 12468999998
Q ss_pred cc-CCcEEEeecCCCCCCCHHHHHHHHcC-CCCcEEEecCCC
Q 007802 407 AI-KPTMLMGTSGVGKTFTKEVVEAMASF-NEKPVIFALSNP 446 (589)
Q Consensus 407 ~v-kPtvLIG~S~~~g~Fteevv~~Ma~~-~erPIIFaLSNP 446 (589)
.. +|+++| ++-.++...+++++.+... .+..||.=+||=
T Consensus 63 ~l~~~d~Ii-l~v~~~~~v~~vi~~l~~~L~~g~iIID~gn~ 103 (470)
T PTZ00142 63 SLKKPRKVI-LLIKAGEAVDETIDNLLPLLEKGDIIIDGGNE 103 (470)
T ss_pred cCCCCCEEE-EEeCChHHHHHHHHHHHhhCCCCCEEEECCCC
Confidence 65 588665 4444556788888776643 457889889884
No 250
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=67.48 E-value=8 Score=37.65 Aligned_cols=96 Identities=17% Similarity=0.255 Sum_probs=50.2
Q ss_pred eEEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEcccCcccCCcccCCchhchhhhccc--------------C
Q 007802 331 TFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLIVSSRKESLQHFKKPWAHEH--------------A 396 (589)
Q Consensus 331 riv~~GAGsAg~GiA~ll~~~~~~~~G~s~eeA~~~i~~vD~~GLv~~~r~~~l~~~k~~fa~~~--------------~ 396 (589)
+|.|+|||..|.|||-+++.+ | -++.++|.+---...-.+.+......+.+.. .
T Consensus 1 ~V~ViGaG~mG~~iA~~~a~~-----G-------~~V~l~d~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~ 68 (180)
T PF02737_consen 1 KVAVIGAGTMGRGIAALFARA-----G-------YEVTLYDRSPEALERARKRIERLLDRLVRKGRLSQEEADAALARIS 68 (180)
T ss_dssp EEEEES-SHHHHHHHHHHHHT-----T-------SEEEEE-SSHHHHHHHHHHHHHHHHHHHHTTTTTHHHHHHHHHTEE
T ss_pred CEEEEcCCHHHHHHHHHHHhC-----C-------CcEEEEECChHHHHhhhhHHHHHHhhhhhhccchhhhhhhhhhhcc
Confidence 688999999999999998764 6 4688888852211000000111001111100 0
Q ss_pred CCCCHHHHHhccCCcEEEeecCCCCCCCHHHHHHHHcCCCCcEEE
Q 007802 397 PIKSLLDAVKAIKPTMLMGTSGVGKTFTKEVVEAMASFNEKPVIF 441 (589)
Q Consensus 397 ~~~~L~e~V~~vkPtvLIG~S~~~g~Fteevv~~Ma~~~erPIIF 441 (589)
-..+|.+++ ..|.+|=+-.-.--.++++.+.+.+.+..=.||
T Consensus 69 ~~~dl~~~~---~adlViEai~E~l~~K~~~~~~l~~~~~~~~il 110 (180)
T PF02737_consen 69 FTTDLEEAV---DADLVIEAIPEDLELKQELFAELDEICPPDTIL 110 (180)
T ss_dssp EESSGGGGC---TESEEEE-S-SSHHHHHHHHHHHHCCS-TTSEE
T ss_pred cccCHHHHh---hhheehhhccccHHHHHHHHHHHHHHhCCCceE
Confidence 013566655 267777654433345777888888777444444
No 251
>PRK06407 ornithine cyclodeaminase; Provisional
Probab=67.03 E-value=40 Score=35.66 Aligned_cols=105 Identities=14% Similarity=0.190 Sum_probs=66.0
Q ss_pred CCceEEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEcccCcccCCcccCCchhchhhhcc----cCCCCCHHH
Q 007802 328 ADQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLIVSSRKESLQHFKKPWAHE----HAPIKSLLD 403 (589)
Q Consensus 328 ~d~riv~~GAGsAg~GiA~ll~~~~~~~~G~s~eeA~~~i~~vD~~GLv~~~r~~~l~~~k~~fa~~----~~~~~~L~e 403 (589)
.-+++.|+|+|.=|..-++.++.. ..+ ++|.+.|+. .+ +...+...+.+. -....+++|
T Consensus 116 da~~l~iiGaG~QA~~~~~a~~~v----~~i------~~v~v~~r~----~~---~a~~f~~~~~~~~~~~v~~~~~~~e 178 (301)
T PRK06407 116 NVENFTIIGSGFQAETQLEGMASV----YNP------KRIRVYSRN----FD---HARAFAERFSKEFGVDIRPVDNAEA 178 (301)
T ss_pred CCcEEEEECCcHHHHHHHHHHHhc----CCC------CEEEEECCC----HH---HHHHHHHHHHHhcCCcEEEeCCHHH
Confidence 468999999999888777666552 133 778877774 22 233333333321 112368999
Q ss_pred HHhccCCcEEEeecCC-CCCCCHHHHHHHHcCCCCcEEEec-CCCCCCCCCCHHHH
Q 007802 404 AVKAIKPTMLMGTSGV-GKTFTKEVVEAMASFNEKPVIFAL-SNPTSQSECTAEEA 457 (589)
Q Consensus 404 ~V~~vkPtvLIG~S~~-~g~Fteevv~~Ma~~~erPIIFaL-SNPt~~~E~t~eda 457 (589)
+++. .|+++-+.+. ..+|..+.++. .--|-+. |+--.+.|+.++-.
T Consensus 179 av~~--aDIV~taT~s~~P~~~~~~l~p------g~hV~aiGs~~p~~~El~~~~l 226 (301)
T PRK06407 179 ALRD--ADTITSITNSDTPIFNRKYLGD------EYHVNLAGSNYPNRREAEHSVL 226 (301)
T ss_pred HHhc--CCEEEEecCCCCcEecHHHcCC------CceEEecCCCCCCcccCCHHHH
Confidence 9986 9999976432 24788887763 2345554 33335799998743
No 252
>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase. NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (
Probab=66.74 E-value=1.3e+02 Score=31.50 Aligned_cols=35 Identities=17% Similarity=0.143 Sum_probs=23.7
Q ss_pred CCceEEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEcc
Q 007802 328 ADQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDS 372 (589)
Q Consensus 328 ~d~riv~~GAGsAg~GiA~ll~~~~~~~~G~s~eeA~~~i~~vD~ 372 (589)
.+++++++|+|..|+..+.++...+ |- .+++.+|+
T Consensus 163 ~g~~VlV~G~G~vGl~~~~~a~~~~----g~------~~vi~~~~ 197 (341)
T cd08237 163 DRNVIGVWGDGNLGYITALLLKQIY----PE------SKLVVFGK 197 (341)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHhc----CC------CcEEEEeC
Confidence 5789999999987776655554321 31 35777775
No 253
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways. In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....
Probab=66.17 E-value=7.9 Score=39.16 Aligned_cols=35 Identities=20% Similarity=0.240 Sum_probs=25.5
Q ss_pred ceEEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEcccCcc
Q 007802 330 QTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLI 376 (589)
Q Consensus 330 ~riv~~GAGsAg~GiA~ll~~~~~~~~G~s~eeA~~~i~~vD~~GLv 376 (589)
-+|+|+|||.||+..|-.|... |+ ++.++|++.-.
T Consensus 2 ~dV~IvGaG~aGl~~A~~L~~~-----G~-------~v~i~E~~~~~ 36 (356)
T PF01494_consen 2 YDVAIVGAGPAGLAAALALARA-----GI-------DVTIIERRPDP 36 (356)
T ss_dssp EEEEEE--SHHHHHHHHHHHHT-----TC-------EEEEEESSSSC
T ss_pred ceEEEECCCHHHHHHHHHHHhc-----cc-------ccccchhcccc
Confidence 4799999999999999988663 65 47788886443
No 254
>COG1052 LdhA Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only]
Probab=65.61 E-value=30 Score=37.22 Aligned_cols=94 Identities=16% Similarity=0.216 Sum_probs=62.6
Q ss_pred HhCCCCCCceEEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEcccCcccCCcccCCchhchhh-hcccCCCCC
Q 007802 322 LVGGTLADQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLIVSSRKESLQHFKKPW-AHEHAPIKS 400 (589)
Q Consensus 322 ~~g~~l~d~riv~~GAGsAg~GiA~ll~~~~~~~~G~s~eeA~~~i~~vD~~GLv~~~r~~~l~~~k~~f-a~~~~~~~~ 400 (589)
..|..+.+.++-|+|.|..|..+|+.+. ++ |+ +|...|++.. ++..+.+ ++ .-+
T Consensus 139 ~~~~~l~gktvGIiG~GrIG~avA~r~~-~F----gm-------~v~y~~~~~~---------~~~~~~~~~~----y~~ 193 (324)
T COG1052 139 LLGFDLRGKTLGIIGLGRIGQAVARRLK-GF----GM-------KVLYYDRSPN---------PEAEKELGAR----YVD 193 (324)
T ss_pred ccccCCCCCEEEEECCCHHHHHHHHHHh-cC----CC-------EEEEECCCCC---------hHHHhhcCce----ecc
Confidence 3456789999999999999999999986 43 54 4555665432 1111111 21 124
Q ss_pred HHHHHhccCCcEEEeecCC----CCCCCHHHHHHHHcCCCCcEEEecCC
Q 007802 401 LLDAVKAIKPTMLMGTSGV----GKTFTKEVVEAMASFNEKPVIFALSN 445 (589)
Q Consensus 401 L~e~V~~vkPtvLIG~S~~----~g~Fteevv~~Ma~~~erPIIFaLSN 445 (589)
|.|.++. .|+|+-..-- .++|+++.++.|. +.-+|.=.|.
T Consensus 194 l~ell~~--sDii~l~~Plt~~T~hLin~~~l~~mk---~ga~lVNtaR 237 (324)
T COG1052 194 LDELLAE--SDIISLHCPLTPETRHLINAEELAKMK---PGAILVNTAR 237 (324)
T ss_pred HHHHHHh--CCEEEEeCCCChHHhhhcCHHHHHhCC---CCeEEEECCC
Confidence 8898886 8988854321 2689999999995 4456554444
No 255
>PRK07340 ornithine cyclodeaminase; Validated
Probab=65.47 E-value=52 Score=34.74 Aligned_cols=104 Identities=11% Similarity=0.141 Sum_probs=63.5
Q ss_pred CCCceEEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEcccCcccCCcccCCchhchhhhcccCC--CCCHHHH
Q 007802 327 LADQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLIVSSRKESLQHFKKPWAHEHAP--IKSLLDA 404 (589)
Q Consensus 327 l~d~riv~~GAGsAg~GiA~ll~~~~~~~~G~s~eeA~~~i~~vD~~GLv~~~r~~~l~~~k~~fa~~~~~--~~~L~e~ 404 (589)
....+++|+|+|..|...++.+... .+. ++|+++|+. .++ ...+...+.+.... ..++.|+
T Consensus 123 ~~~~~v~IiGaG~qa~~~~~al~~~----~~~------~~v~v~~r~----~~~---a~~~a~~~~~~~~~~~~~~~~~a 185 (304)
T PRK07340 123 APPGDLLLIGTGVQARAHLEAFAAG----LPV------RRVWVRGRT----AAS---AAAFCAHARALGPTAEPLDGEAI 185 (304)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHh----CCC------CEEEEEcCC----HHH---HHHHHHHHHhcCCeeEECCHHHH
Confidence 3567999999999998888877653 243 578888874 221 22222222211111 3578999
Q ss_pred HhccCCcEEEeecCCC-CCCCHHHHHHHHcCCCCcEEEecCCCC-CCCCCCHHH
Q 007802 405 VKAIKPTMLMGTSGVG-KTFTKEVVEAMASFNEKPVIFALSNPT-SQSECTAEE 456 (589)
Q Consensus 405 V~~vkPtvLIG~S~~~-g~Fteevv~~Ma~~~erPIIFaLSNPt-~~~E~t~ed 456 (589)
+++ .|++|-++..+ .+|..+ +| +.--|-++.-.+ .+.|+.+|-
T Consensus 186 v~~--aDiVitaT~s~~Pl~~~~-~~------~g~hi~~iGs~~p~~~El~~~~ 230 (304)
T PRK07340 186 PEA--VDLVVTATTSRTPVYPEA-AR------AGRLVVAVGAFTPDMAELAPRT 230 (304)
T ss_pred hhc--CCEEEEccCCCCceeCcc-CC------CCCEEEecCCCCCCcccCCHHH
Confidence 975 99999876533 355542 22 445666665422 468888763
No 256
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=64.74 E-value=13 Score=35.25 Aligned_cols=100 Identities=17% Similarity=0.218 Sum_probs=53.8
Q ss_pred ceEEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEcccCcccCCcccCCchhchhhhcc-cCCCCCHHHHHhcc
Q 007802 330 QTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLIVSSRKESLQHFKKPWAHE-HAPIKSLLDAVKAI 408 (589)
Q Consensus 330 ~riv~~GAGsAg~GiA~ll~~~~~~~~G~s~eeA~~~i~~vD~~GLv~~~r~~~l~~~k~~fa~~-~~~~~~L~e~V~~v 408 (589)
.||-|+|.|..|.+||+.|... |. +++.+|+. .++ .. .+... .....|+.|+++.
T Consensus 2 ~~Ig~IGlG~mG~~~a~~L~~~-----g~-------~v~~~d~~----~~~---~~----~~~~~g~~~~~s~~e~~~~- 57 (163)
T PF03446_consen 2 MKIGFIGLGNMGSAMARNLAKA-----GY-------EVTVYDRS----PEK---AE----ALAEAGAEVADSPAEAAEQ- 57 (163)
T ss_dssp BEEEEE--SHHHHHHHHHHHHT-----TT-------EEEEEESS----HHH---HH----HHHHTTEEEESSHHHHHHH-
T ss_pred CEEEEEchHHHHHHHHHHHHhc-----CC-------eEEeeccc----hhh---hh----hhHHhhhhhhhhhhhHhhc-
Confidence 4899999999999999999653 63 57777753 111 22 23222 1233688899987
Q ss_pred CCcEEEeecCCCCCCCHHHHHH---HHcCCCCcEEEecCCCCCCCCCCHHHH
Q 007802 409 KPTMLMGTSGVGKTFTKEVVEA---MASFNEKPVIFALSNPTSQSECTAEEA 457 (589)
Q Consensus 409 kPtvLIG~S~~~g~Fteevv~~---Ma~~~erPIIFaLSNPt~~~E~t~eda 457 (589)
.+++|=+-.-+ .=.++++.. .....+..||.=+|+-. +|.+-+-+
T Consensus 58 -~dvvi~~v~~~-~~v~~v~~~~~i~~~l~~g~iiid~sT~~--p~~~~~~~ 105 (163)
T PF03446_consen 58 -ADVVILCVPDD-DAVEAVLFGENILAGLRPGKIIIDMSTIS--PETSRELA 105 (163)
T ss_dssp -BSEEEE-SSSH-HHHHHHHHCTTHGGGS-TTEEEEE-SS----HHHHHHHH
T ss_pred -ccceEeecccc-hhhhhhhhhhHHhhccccceEEEecCCcc--hhhhhhhh
Confidence 57776432211 113444443 23334666777777654 55444433
No 257
>cd01489 Uba2_SUMO Ubiquitin activating enzyme (E1) subunit UBA2. UBA2 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. UBA2 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.
Probab=64.07 E-value=9.3 Score=40.91 Aligned_cols=32 Identities=25% Similarity=0.427 Sum_probs=28.6
Q ss_pred eEEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEccc
Q 007802 331 TFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSK 373 (589)
Q Consensus 331 riv~~GAGsAg~GiA~ll~~~~~~~~G~s~eeA~~~i~~vD~~ 373 (589)
||+++|+|.-|+-+++.|+.+ |+ ++|.++|.+
T Consensus 1 kVlIVGaGGlG~EiaKnLal~-----Gv------g~ItIvD~D 32 (312)
T cd01489 1 KVLVVGAGGIGCELLKNLVLT-----GF------GEIHIIDLD 32 (312)
T ss_pred CEEEECCCHHHHHHHHHHHHh-----cC------CeEEEEcCC
Confidence 689999999999999999764 76 789999987
No 258
>PF03447 NAD_binding_3: Homoserine dehydrogenase, NAD binding domain; InterPro: IPR005106 Bacteria, plants and fungi metabolise aspartic acid to produce four amino acids - lysine, threonine, methionine and isoleucine - in a series of reactions known as the aspartate pathway. Additionally, several important metabolic intermediates are produced by these reactions, such as diaminopimelic acid, an essential component of bacterial cell wall biosynthesis, and dipicolinic acid, which is involved in sporulation in Gram-positive bacteria. Members of the animal kingdom do not posses this pathway and must therefore acquire these essential amino acids through their diet. Research into improving the metabolic flux through this pathway has the potential to increase the yield of the essential amino acids in important crops, thus improving their nutritional value. Additionally, since the enzymes are not present in animals, inhibitors of them are promising targets for the development of novel antibiotics and herbicides. For more information see []. Homoserine dehydrogenase (1.1.1.3 from EC) catalyses the third step in the aspartate pathway; theNAD(P)-dependent reduction of aspartate beta-semialdehyde into homoserine [, ]. Homoserine is an intermediate in the biosynthesis of threonine, isoleucine, and methionine. The enzyme can be found in a monofunctional form, in some bacteria and yeast, or a bifunctional form consisting of an N-terminal aspartokinase domain and a C-terminal homoserine dehydrogenase domain, as found in bacteria such as Escherichia coli and in plants. Structural analysis of the yeast monofunctional enzyme (P31116 from SWISSPROT) indicates that the enzyme is a dimer composed of three distinct regions; an N-terminal nucleotide-binding domain, a short central dimerisation region, and a C-terminal catalytic domain []. The N-terminal domain forms a modified Rossman fold, while the catalytic domain forms a novel alpha-beta mixed sheet. This entry represents the NAD(P)-binding domain of aspartate and homoserine dehydrogenase. Asparate dehydrogenase (1.4.1.21 from EC) is strictly specific for L-aspartate as substrate and catalyses the first step in NAD biosynthesis from aspartate. The enzyme has a higher affinity for NAD+ than NADP+ []. Note that the C terminus of the protein contributes a helix to this domain that is not covered by this model.; GO: 0016491 oxidoreductase activity, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 3ING_A 3MTJ_A 3DO5_A 3JSA_A 3C8M_A 1J5P_A 1H2H_A 2EJW_E 1TVE_A 1EBU_D ....
Probab=63.92 E-value=12 Score=33.30 Aligned_cols=88 Identities=15% Similarity=0.182 Sum_probs=50.1
Q ss_pred CcChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEcccCcccCCcccCCchhchhhhcccCCCCCHHHHHhccCCcEEEe
Q 007802 336 GAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLIVSSRKESLQHFKKPWAHEHAPIKSLLDAVKAIKPTMLMG 415 (589)
Q Consensus 336 GAGsAg~GiA~ll~~~~~~~~G~s~eeA~~~i~~vD~~GLv~~~r~~~l~~~k~~fa~~~~~~~~L~e~V~~vkPtvLIG 415 (589)
|.|..|.+++++|...-.. -+ -+=+.++|+++++... ............++.+.++..++|++|=
T Consensus 1 G~G~VG~~l~~~l~~~~~~-~~------~~v~~v~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~dvvVE 65 (117)
T PF03447_consen 1 GFGNVGRGLLEQLKEQQER-ID------LEVVGVADRSMLISKD--------WAASFPDEAFTTDLEELIDDPDIDVVVE 65 (117)
T ss_dssp --SHHHHHHHHHHHHTHHH-CE------EEEEEEEESSEEEETT--------HHHHHTHSCEESSHHHHHTHTT-SEEEE
T ss_pred CCCHHHHHHHHHHHhCccc-CC------EEEEEEEECCchhhhh--------hhhhcccccccCCHHHHhcCcCCCEEEE
Confidence 7899999999999763211 01 1346677877444432 1112122233468999999888999999
Q ss_pred ecCCCCCCCHHHHHHHHcCCCCcEEE
Q 007802 416 TSGVGKTFTKEVVEAMASFNEKPVIF 441 (589)
Q Consensus 416 ~S~~~g~Fteevv~~Ma~~~erPIIF 441 (589)
+++ ....++-+.+.+. +...+|-
T Consensus 66 ~t~-~~~~~~~~~~~L~--~G~~VVt 88 (117)
T PF03447_consen 66 CTS-SEAVAEYYEKALE--RGKHVVT 88 (117)
T ss_dssp -SS-CHHHHHHHHHHHH--TTCEEEE
T ss_pred CCC-chHHHHHHHHHHH--CCCeEEE
Confidence 944 4455555555554 2445554
No 259
>COG1250 FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism]
Probab=63.84 E-value=1.9e+02 Score=31.10 Aligned_cols=140 Identities=16% Similarity=0.120 Sum_probs=85.2
Q ss_pred HHHHHhccCCcEEEeecCCCCCCCHHHHHHHHcCCCCcEEEecCCCCC--------CCCCCHHHHhccccCcEEEee-CC
Q 007802 401 LLDAVKAIKPTMLMGTSGVGKTFTKEVVEAMASFNEKPVIFALSNPTS--------QSECTAEEAYTWSKGQAIFAS-GS 471 (589)
Q Consensus 401 L~e~V~~vkPtvLIG~S~~~g~Fteevv~~Ma~~~erPIIFaLSNPt~--------~~E~t~eda~~wT~GraifAs-GS 471 (589)
+.++=+.+||+++|+.+|.+ +.-.-+.+=.++-+|=|.+=.-||.. ..+.|.+++++-+ ..+..+ |-
T Consensus 101 f~~l~~~~~~~aIlASNTSs--l~it~ia~~~~rper~iG~HFfNP~~~m~LVEvI~g~~T~~e~~~~~--~~~~~~igK 176 (307)
T COG1250 101 FAELEALAKPDAILASNTSS--LSITELAEALKRPERFIGLHFFNPVPLMPLVEVIRGEKTSDETVERV--VEFAKKIGK 176 (307)
T ss_pred HHHHHhhcCCCcEEeeccCC--CCHHHHHHHhCCchhEEEEeccCCCCcceeEEEecCCCCCHHHHHHH--HHHHHHcCC
Confidence 44455567899999987744 33222222225556668888999973 4577777776532 111111 21
Q ss_pred CCCcceeCCeeeCCCCccccccchhhhHHHHHhCCcccCHHHHHHHHHHHHhccCcccCCCCCccCCCCCchhhHHHHHH
Q 007802 472 PFDPVEYNGKVFVPGQGNNAYIFPGLGLGLIISGAIRVRDEMLLAASEALAAQVTQEHFDKGLIYPPFTNIRKISAHIAA 551 (589)
Q Consensus 472 Pf~pv~~~G~~~~p~Q~NN~~iFPGiglG~~~~~a~~Itd~m~~aAA~aLA~~v~~~~l~~g~l~P~l~~ireVs~~VA~ 551 (589)
.||. ..+.||-.=|-..+|.+.-++.+..---.|.+.+-++.+.-+.+ . .-|+.-.+-+-..+..
T Consensus 177 --~~vv---~~D~pGFi~NRil~~~~~eA~~l~~eGva~~e~ID~~~~~~~G~------p----mGpf~l~D~~GlD~~~ 241 (307)
T COG1250 177 --TPVV---VKDVPGFIVNRLLAALLNEAIRLLEEGVATPEEIDAAMRQGLGL------P----MGPFELADLIGLDVML 241 (307)
T ss_pred --CCEe---ecCCCceehHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHhccCC------C----ccHHHHHHHHhHHHHH
Confidence 1121 24678999999999999888888877778888888777653322 1 2233334455556666
Q ss_pred HHHHHHHH
Q 007802 552 KVAAKAYD 559 (589)
Q Consensus 552 aVa~~A~~ 559 (589)
.|+++.++
T Consensus 242 ~i~~~~~~ 249 (307)
T COG1250 242 HIMKVLNE 249 (307)
T ss_pred HHHHHHHH
Confidence 66655554
No 260
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=63.73 E-value=30 Score=36.03 Aligned_cols=34 Identities=21% Similarity=0.231 Sum_probs=26.6
Q ss_pred ceEEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEccc
Q 007802 330 QTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSK 373 (589)
Q Consensus 330 ~riv~~GAGsAg~GiA~ll~~~~~~~~G~s~eeA~~~i~~vD~~ 373 (589)
.+|.|+|+|..|..+|..+... |. ..+++++|++
T Consensus 7 ~~I~IIG~G~mG~sla~~l~~~-----g~-----~~~V~~~dr~ 40 (307)
T PRK07502 7 DRVALIGIGLIGSSLARAIRRL-----GL-----AGEIVGADRS 40 (307)
T ss_pred cEEEEEeeCHHHHHHHHHHHhc-----CC-----CcEEEEEECC
Confidence 6899999999999999888653 53 1468888874
No 261
>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=63.67 E-value=18 Score=37.87 Aligned_cols=31 Identities=32% Similarity=0.382 Sum_probs=24.9
Q ss_pred eEEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEccc
Q 007802 331 TFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSK 373 (589)
Q Consensus 331 riv~~GAGsAg~GiA~ll~~~~~~~~G~s~eeA~~~i~~vD~~ 373 (589)
||.|+|||+.|..+|..|.+. | .++.+++++
T Consensus 2 kI~IiGaGa~G~ala~~L~~~-----g-------~~V~l~~r~ 32 (326)
T PRK14620 2 KISILGAGSFGTAIAIALSSK-----K-------ISVNLWGRN 32 (326)
T ss_pred EEEEECcCHHHHHHHHHHHHC-----C-------CeEEEEecC
Confidence 699999999999999988653 4 457777764
No 262
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=63.64 E-value=10 Score=36.26 Aligned_cols=36 Identities=14% Similarity=0.199 Sum_probs=28.9
Q ss_pred CCCCceEEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEccc
Q 007802 326 TLADQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSK 373 (589)
Q Consensus 326 ~l~d~riv~~GAGsAg~GiA~ll~~~~~~~~G~s~eeA~~~i~~vD~~ 373 (589)
+|++.||||+|+|..|.-.+++|+++ | .++.+++.+
T Consensus 10 ~l~~~~vlVvGGG~va~rka~~Ll~~-----g-------a~V~VIsp~ 45 (157)
T PRK06719 10 NLHNKVVVIIGGGKIAYRKASGLKDT-----G-------AFVTVVSPE 45 (157)
T ss_pred EcCCCEEEEECCCHHHHHHHHHHHhC-----C-------CEEEEEcCc
Confidence 58899999999999999988888763 4 467777643
No 263
>PLN02688 pyrroline-5-carboxylate reductase
Probab=63.52 E-value=33 Score=34.68 Aligned_cols=94 Identities=16% Similarity=0.236 Sum_probs=54.4
Q ss_pred eEEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEE-cccCcccCCcccCCchhchhhhccc-CCCCCHHHHHhcc
Q 007802 331 TFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLV-DSKGLIVSSRKESLQHFKKPWAHEH-APIKSLLDAVKAI 408 (589)
Q Consensus 331 riv~~GAGsAg~GiA~ll~~~~~~~~G~s~eeA~~~i~~v-D~~GLv~~~r~~~l~~~k~~fa~~~-~~~~~L~e~V~~v 408 (589)
||.|+|.|..|..+|+-|++. |.- -..+|+++ |+. .++ . +.+.... ....+..|++++
T Consensus 2 kI~~IG~G~mG~a~a~~L~~~-----g~~---~~~~i~v~~~r~----~~~---~----~~~~~~g~~~~~~~~e~~~~- 61 (266)
T PLN02688 2 RVGFIGAGKMAEAIARGLVAS-----GVV---PPSRISTADDSN----PAR---R----DVFQSLGVKTAASNTEVVKS- 61 (266)
T ss_pred eEEEECCcHHHHHHHHHHHHC-----CCC---CcceEEEEeCCC----HHH---H----HHHHHcCCEEeCChHHHHhc-
Confidence 689999999999999988653 420 02367776 542 111 1 1222211 112467788875
Q ss_pred CCcEEEeecCCCCCCCHHHHHHHHcC-CCCcEEEecCCCC
Q 007802 409 KPTMLMGTSGVGKTFTKEVVEAMASF-NEKPVIFALSNPT 447 (589)
Q Consensus 409 kPtvLIG~S~~~g~Fteevv~~Ma~~-~erPIIFaLSNPt 447 (589)
.|++| ++..+ ...+++++..... .+..+|..+++.+
T Consensus 62 -aDvVi-l~v~~-~~~~~vl~~l~~~~~~~~~iIs~~~g~ 98 (266)
T PLN02688 62 -SDVII-LAVKP-QVVKDVLTELRPLLSKDKLLVSVAAGI 98 (266)
T ss_pred -CCEEE-EEECc-HHHHHHHHHHHhhcCCCCEEEEecCCC
Confidence 66665 33333 4577887777543 3445666665554
No 264
>COG1179 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1 [Coenzyme metabolism]
Probab=63.10 E-value=6.5 Score=41.09 Aligned_cols=42 Identities=24% Similarity=0.346 Sum_probs=34.0
Q ss_pred CCCCceEEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEcccCcccC
Q 007802 326 TLADQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLIVS 378 (589)
Q Consensus 326 ~l~d~riv~~GAGsAg~GiA~ll~~~~~~~~G~s~eeA~~~i~~vD~~GLv~~ 378 (589)
+|++++|+++|.|..|-=+++.|.. .|+ .+|.++|.+-+=.+
T Consensus 27 kl~~~~V~VvGiGGVGSw~veALaR-----sGi------g~itlID~D~v~vT 68 (263)
T COG1179 27 KLKQAHVCVVGIGGVGSWAVEALAR-----SGI------GRITLIDMDDVCVT 68 (263)
T ss_pred HHhhCcEEEEecCchhHHHHHHHHH-----cCC------CeEEEEeccccccc
Confidence 5889999999999888877776655 487 88999999866443
No 265
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=63.02 E-value=10 Score=37.66 Aligned_cols=35 Identities=14% Similarity=0.247 Sum_probs=28.7
Q ss_pred CCCCceEEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEcc
Q 007802 326 TLADQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDS 372 (589)
Q Consensus 326 ~l~d~riv~~GAGsAg~GiA~ll~~~~~~~~G~s~eeA~~~i~~vD~ 372 (589)
+|++.++||+|+|..|.-.++.|..+ | .+|++++.
T Consensus 7 ~l~~k~vLVIGgG~va~~ka~~Ll~~-----g-------a~V~VIs~ 41 (202)
T PRK06718 7 DLSNKRVVIVGGGKVAGRRAITLLKY-----G-------AHIVVISP 41 (202)
T ss_pred EcCCCEEEEECCCHHHHHHHHHHHHC-----C-------CeEEEEcC
Confidence 58899999999999998888877653 4 46888865
No 266
>PRK12429 3-hydroxybutyrate dehydrogenase; Provisional
Probab=62.91 E-value=34 Score=33.34 Aligned_cols=35 Identities=29% Similarity=0.305 Sum_probs=23.9
Q ss_pred CCCceEEEeCc-ChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEccc
Q 007802 327 LADQTFLFLGA-GEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSK 373 (589)
Q Consensus 327 l~d~riv~~GA-GsAg~GiA~ll~~~~~~~~G~s~eeA~~~i~~vD~~ 373 (589)
+++++++|.|+ |..|..+|+.+++ .| .+++++|++
T Consensus 2 ~~~~~vlItG~sg~iG~~la~~l~~-----~g-------~~v~~~~r~ 37 (258)
T PRK12429 2 LKGKVALVTGAASGIGLEIALALAK-----EG-------AKVVIADLN 37 (258)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHH-----CC-------CeEEEEeCC
Confidence 56789999996 6666666666643 35 358887774
No 267
>TIGR00465 ilvC ketol-acid reductoisomerase. This is the second enzyme in the parallel isoleucine-valine biosynthetic pathway
Probab=62.48 E-value=31 Score=36.85 Aligned_cols=24 Identities=25% Similarity=0.295 Sum_probs=21.7
Q ss_pred CCCceEEEeCcChHHHHHHHHHHH
Q 007802 327 LADQTFLFLGAGEAGTGIAELIAL 350 (589)
Q Consensus 327 l~d~riv~~GAGsAg~GiA~ll~~ 350 (589)
|++.||.|+|+|.-|-++|..|..
T Consensus 1 l~~kkIgiIG~G~mG~AiA~~L~~ 24 (314)
T TIGR00465 1 LKGKTVAIIGYGSQGHAQALNLRD 24 (314)
T ss_pred CCcCEEEEEeEcHHHHHHHHHHHH
Confidence 578999999999999999998865
No 268
>TIGR01214 rmlD dTDP-4-dehydrorhamnose reductase. This enzyme catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS core antigen, O-antigen, etc.
Probab=62.34 E-value=31 Score=34.55 Aligned_cols=60 Identities=20% Similarity=0.350 Sum_probs=41.2
Q ss_pred eEEEeCc-ChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEcccCcccCCcccCCchhchhhhcccCCCCCHHHHHhccC
Q 007802 331 TFLFLGA-GEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLIVSSRKESLQHFKKPWAHEHAPIKSLLDAVKAIK 409 (589)
Q Consensus 331 riv~~GA-GsAg~GiA~ll~~~~~~~~G~s~eeA~~~i~~vD~~GLv~~~r~~~l~~~k~~fa~~~~~~~~L~e~V~~vk 409 (589)
||++.|| |-.|-.+++.+.+ .| .+++.+++. .. ++. +..++.++++..+
T Consensus 1 kilv~G~tG~iG~~l~~~l~~-----~g-------~~v~~~~r~------~~-d~~-----------~~~~~~~~~~~~~ 50 (287)
T TIGR01214 1 RILITGANGQLGRELVQQLSP-----EG-------RVVVALTSS------QL-DLT-----------DPEALERLLRAIR 50 (287)
T ss_pred CEEEEcCCCHHHHHHHHHHHh-----cC-------CEEEEeCCc------cc-CCC-----------CHHHHHHHHHhCC
Confidence 6899996 9888888887754 25 357777763 11 121 1135778888889
Q ss_pred CcEEEeecCCC
Q 007802 410 PTMLMGTSGVG 420 (589)
Q Consensus 410 PtvLIG~S~~~ 420 (589)
||++|=+.+..
T Consensus 51 ~d~vi~~a~~~ 61 (287)
T TIGR01214 51 PDAVVNTAAYT 61 (287)
T ss_pred CCEEEECCccc
Confidence 99999887643
No 269
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=62.02 E-value=9.3 Score=38.19 Aligned_cols=31 Identities=26% Similarity=0.393 Sum_probs=25.3
Q ss_pred eEEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEccc
Q 007802 331 TFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSK 373 (589)
Q Consensus 331 riv~~GAGsAg~GiA~ll~~~~~~~~G~s~eeA~~~i~~vD~~ 373 (589)
+|+|+|||.||+..|..|.. .|+ ++.++|+.
T Consensus 2 dvvIIG~G~aGl~aA~~l~~-----~g~-------~v~lie~~ 32 (300)
T TIGR01292 2 DVIIIGAGPAGLTAAIYAAR-----ANL-------KTLIIEGM 32 (300)
T ss_pred cEEEECCCHHHHHHHHHHHH-----CCC-------CEEEEecc
Confidence 68999999999999987754 253 58899975
No 270
>PRK06270 homoserine dehydrogenase; Provisional
Probab=61.73 E-value=52 Score=35.32 Aligned_cols=106 Identities=18% Similarity=0.217 Sum_probs=63.8
Q ss_pred ceEEEeCcChHHHHHHHHHHHH---HHhccCCCHHhhcCeEEEEcccCcccCCcccCCchh-chhhhcccC---------
Q 007802 330 QTFLFLGAGEAGTGIAELIALE---MSKQTKAPIEEARKKIWLVDSKGLIVSSRKESLQHF-KKPWAHEHA--------- 396 (589)
Q Consensus 330 ~riv~~GAGsAg~GiA~ll~~~---~~~~~G~s~eeA~~~i~~vD~~GLv~~~r~~~l~~~-k~~fa~~~~--------- 396 (589)
.||.++|.|..|.+++++|.+. +.++.|+. -+=+-++|++|.+.+.+. ++.. ...++.+..
T Consensus 3 i~V~IiG~G~VG~~~~~~L~~~~~~~~~~~g~~----~~vvai~d~~~~~~~~~G--i~~~~~~~~~~~~~~~~~~~~~~ 76 (341)
T PRK06270 3 MKIALIGFGGVGQGVAELLAEKREYLKKRYGLD----LKVVAIADSSGSAIDPDG--LDLELALKVKEETGKLADYPEGG 76 (341)
T ss_pred EEEEEECCCHHHHHHHHHHHHhHHHHHHHcCCC----EEEEEEEeCCCcccCcCC--CCHHHHHHHHhccCCcccCcccc
Confidence 4899999999999999998653 22222321 122457799998887653 3221 122332211
Q ss_pred CCCCHHHHHhccCCcEEEeecCC---CCCCCHHHHHHHHcCCCCcEEEe
Q 007802 397 PIKSLLDAVKAIKPTMLMGTSGV---GKTFTKEVVEAMASFNEKPVIFA 442 (589)
Q Consensus 397 ~~~~L~e~V~~vkPtvLIG~S~~---~g~Fteevv~~Ma~~~erPIIFa 442 (589)
...++.|+++...+|++|=++.. ++-...++++..-+ +..+||.+
T Consensus 77 ~~~d~~ell~~~~~DvVvd~T~s~~~~~~~a~~~~~~aL~-~GkhVVta 124 (341)
T PRK06270 77 GEISGLEVIRSVDADVVVEATPTNIETGEPALSHCRKALE-RGKHVVTS 124 (341)
T ss_pred ccCCHHHHhhccCCCEEEECCcCcccccchHHHHHHHHHH-CCCEEEcC
Confidence 12388999988889999977652 12222455444333 35788873
No 271
>TIGR01283 nifE nitrogenase molybdenum-iron cofactor biosynthesis protein NifE. This protein is part of the NifEN complex involved in biosynthesis of the molybdenum-iron cofactor used by the homologous NifDK complex of nitrogenase. In a few species, the protein is found as a NifEN fusion protein.
Probab=61.68 E-value=21 Score=39.75 Aligned_cols=86 Identities=12% Similarity=0.135 Sum_probs=48.0
Q ss_pred HHHHHHHhCCCCCCceEEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEcccCcccCCccc--CCchhch--hh
Q 007802 316 ILSALKLVGGTLADQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLIVSSRKE--SLQHFKK--PW 391 (589)
Q Consensus 316 ll~Alr~~g~~l~d~riv~~GAGsAg~GiA~ll~~~~~~~~G~s~eeA~~~i~~vD~~GLv~~~r~~--~l~~~k~--~f 391 (589)
+..++.-....|.+.|+++++.+.-..++++++.+ .|+. +..+.+. .....+ .+..... ..
T Consensus 313 ~~~~l~~~~~~L~Gkrv~i~~g~~~~~~l~~~l~e-----lGme-------vv~~~t~---~~~~~d~~~l~~~~~~~~~ 377 (456)
T TIGR01283 313 IRPALEPYRERLKGKKAAIYTGGVKSWSLVSALQD-----LGME-------VVATGTQ---KGTEEDYARIRELMGEGTV 377 (456)
T ss_pred HHHHHHHHHHHcCCCEEEEEcCCchHHHHHHHHHH-----CCCE-------EEEEeee---cCCHHHHHHHHHHcCCCeE
Confidence 34444445567889999999888888999997754 4872 2222111 111100 0111100 00
Q ss_pred hcccCCCCCHHHHHhccCCcEEEee
Q 007802 392 AHEHAPIKSLLDAVKAIKPTMLMGT 416 (589)
Q Consensus 392 a~~~~~~~~L~e~V~~vkPtvLIG~ 416 (589)
..+..+...+.+.++..+||++||-
T Consensus 378 v~~~~d~~e~~~~i~~~~pDl~ig~ 402 (456)
T TIGR01283 378 MLDDANPRELLKLLLEYKADLLIAG 402 (456)
T ss_pred EEeCCCHHHHHHHHhhcCCCEEEEc
Confidence 0011122357888899999999984
No 272
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=61.57 E-value=11 Score=37.54 Aligned_cols=36 Identities=17% Similarity=0.361 Sum_probs=29.8
Q ss_pred CCCCceEEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEccc
Q 007802 326 TLADQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSK 373 (589)
Q Consensus 326 ~l~d~riv~~GAGsAg~GiA~ll~~~~~~~~G~s~eeA~~~i~~vD~~ 373 (589)
+|+++|+||+|+|..|..-++.|+.+ | .+|.++|.+
T Consensus 6 ~l~gk~vlVvGgG~va~rk~~~Ll~~-----g-------a~VtVvsp~ 41 (205)
T TIGR01470 6 NLEGRAVLVVGGGDVALRKARLLLKA-----G-------AQLRVIAEE 41 (205)
T ss_pred EcCCCeEEEECcCHHHHHHHHHHHHC-----C-------CEEEEEcCC
Confidence 47889999999999999998888763 5 368888874
No 273
>TIGR01771 L-LDH-NAD L-lactate dehydrogenase. This model represents the NAD-dependent L-lactate dehydrogenases from bacteria and eukaryotes. This enzyme function as as the final step in anaerobic glycolysis. Although lactate dehydrogenases have in some cases been mistaken for malate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of malate dehydrogenases.
Probab=60.92 E-value=19 Score=38.09 Aligned_cols=123 Identities=18% Similarity=0.192 Sum_probs=72.1
Q ss_pred EeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEcccCcccCCcccCCchhchhhhcccCCCCCHHHHHhccCCcEE
Q 007802 334 FLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLIVSSRKESLQHFKKPWAHEHAPIKSLLDAVKAIKPTML 413 (589)
Q Consensus 334 ~~GAGsAg~GiA~ll~~~~~~~~G~s~eeA~~~i~~vD~~GLv~~~r~~~l~~~k~~fa~~~~~~~~L~e~V~~vkPtvL 413 (589)
|+|||..|..+|-+|+. .|+ ...|.|+|.+-=..++-.-+|.+..-.+.++..-..+-.+.++. .|++
T Consensus 1 iIGaG~VG~~~a~~l~~-----~~l-----~~el~L~Di~~~~~~g~a~Dl~~~~~~~~~~~~i~~~~~~~~~d--aDiv 68 (299)
T TIGR01771 1 IIGAGNVGSSTAFALLN-----QGI-----ADEIVLIDINKDKAEGEAMDLQHAASFLPTPKKIRSGDYSDCKD--ADLV 68 (299)
T ss_pred CCCcCHHHHHHHHHHHh-----cCC-----CCEEEEEeCCCChhhHHHHHHHHhhcccCCCeEEecCCHHHHCC--CCEE
Confidence 57999999999998864 265 25799999842111111111332221111110001122466765 8998
Q ss_pred EeecCCC---CC-----------CCHHHHHHHHcCCCCcEEEecCCCCCCCCCCHHHHhccccC--cEEEeeCC
Q 007802 414 MGTSGVG---KT-----------FTKEVVEAMASFNEKPVIFALSNPTSQSECTAEEAYTWSKG--QAIFASGS 471 (589)
Q Consensus 414 IG~S~~~---g~-----------Fteevv~~Ma~~~erPIIFaLSNPt~~~E~t~eda~~wT~G--raifAsGS 471 (589)
|=+.+.+ |- .=+++++.+.+++..-+|+-.|||.. ....-++++++= +-+|.+|.
T Consensus 69 Vitag~~rk~g~~R~dll~~N~~i~~~~~~~i~~~~p~~~vivvsNP~d---~~t~~~~~~sg~p~~~viG~gt 139 (299)
T TIGR01771 69 VITAGAPQKPGETRLELVGRNVRIMKSIVPEVVKSGFDGIFLVATNPVD---ILTYVAWKLSGFPKNRVIGSGT 139 (299)
T ss_pred EECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEeCCHHH---HHHHHHHHHhCCCHHHEEeccc
Confidence 8666654 21 12467888889999999999999983 445555555411 23666653
No 274
>PF02423 OCD_Mu_crystall: Ornithine cyclodeaminase/mu-crystallin family; InterPro: IPR003462 This entry represents the bacterial ornithine cyclodeaminase enzyme family, which catalyse the deamination of ornithine to proline []. The family also includes mu-crystallin, a mammalian homologue of bacterial ornithine cyclodeaminase [], which is the major component of the eye lens in several Australian marsupials. mRNA for mu-crystallin has also been found in human retina [].; PDB: 1U7H_B 1X7D_B 2I99_B 3HDJ_A 1VLL_B 1OMO_A.
Probab=60.49 E-value=18 Score=38.33 Aligned_cols=103 Identities=17% Similarity=0.189 Sum_probs=53.8
Q ss_pred CceEEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEcccCcccCCcccCCchhchhhhc---ccCCCCCHHHHH
Q 007802 329 DQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLIVSSRKESLQHFKKPWAH---EHAPIKSLLDAV 405 (589)
Q Consensus 329 d~riv~~GAGsAg~GiA~ll~~~~~~~~G~s~eeA~~~i~~vD~~GLv~~~r~~~l~~~k~~fa~---~~~~~~~L~e~V 405 (589)
-.++.|+|+|.-|..-++.+... .++ ++|+++|+. ..+ ...+...+.+ +-....+++|++
T Consensus 128 ~~~l~viGaG~QA~~~~~a~~~~----~~i------~~v~v~~r~----~~~---~~~~~~~~~~~~~~v~~~~~~~~av 190 (313)
T PF02423_consen 128 ARTLGVIGAGVQARWHLRALAAV----RPI------KEVRVYSRS----PER---AEAFAARLRDLGVPVVAVDSAEEAV 190 (313)
T ss_dssp --EEEEE--SHHHHHHHHHHHHH----S--------SEEEEE-SS----HHH---HHHHHHHHHCCCTCEEEESSHHHHH
T ss_pred CceEEEECCCHHHHHHHHHHHHh----CCc------eEEEEEccC----hhH---HHHHHHhhccccccceeccchhhhc
Confidence 36899999999888877766554 233 789988874 111 2233333332 111236899999
Q ss_pred hccCCcEEEeecCCC---CCCCHHHHHHHHcCCCCcEEEecCCCC-CCCCCCHHH
Q 007802 406 KAIKPTMLMGTSGVG---KTFTKEVVEAMASFNEKPVIFALSNPT-SQSECTAEE 456 (589)
Q Consensus 406 ~~vkPtvLIG~S~~~---g~Fteevv~~Ma~~~erPIIFaLSNPt-~~~E~t~ed 456 (589)
+. .|+++-+.+.. ..|..+.++ +.-.|-++.--+ .+.|+.++-
T Consensus 191 ~~--aDii~taT~s~~~~P~~~~~~l~------~g~hi~~iGs~~~~~~El~~~~ 237 (313)
T PF02423_consen 191 RG--ADIIVTATPSTTPAPVFDAEWLK------PGTHINAIGSYTPGMRELDDEL 237 (313)
T ss_dssp TT--SSEEEE----SSEEESB-GGGS-------TT-EEEE-S-SSTTBESB-HHH
T ss_pred cc--CCEEEEccCCCCCCccccHHHcC------CCcEEEEecCCCCchhhcCHHH
Confidence 97 89999875433 267777766 344666665422 345776643
No 275
>PRK00536 speE spermidine synthase; Provisional
Probab=60.41 E-value=15 Score=38.35 Aligned_cols=102 Identities=15% Similarity=0.142 Sum_probs=60.8
Q ss_pred CceEEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEcccCcccCCcccCCchhchhhhcccCCC-CCHHHHHhc
Q 007802 329 DQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLIVSSRKESLQHFKKPWAHEHAPI-KSLLDAVKA 407 (589)
Q Consensus 329 d~riv~~GAGsAg~GiA~ll~~~~~~~~G~s~eeA~~~i~~vD~~GLv~~~r~~~l~~~k~~fa~~~~~~-~~L~e~V~~ 407 (589)
=.||+|+|+|-.| +++-++.. + +++.|||-++-|++--++.++..+..|..+.-.. .-+.+.- .
T Consensus 73 pk~VLIiGGGDGg--~~REvLkh-------~-----~~v~mVeID~~Vv~~~k~~lP~~~~~~~DpRv~l~~~~~~~~-~ 137 (262)
T PRK00536 73 LKEVLIVDGFDLE--LAHQLFKY-------D-----THVDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQLLDLD-I 137 (262)
T ss_pred CCeEEEEcCCchH--HHHHHHCc-------C-----CeeEEEECCHHHHHHHHHHCHHHHHhhcCCCEEEeehhhhcc-C
Confidence 3899999999985 66666543 1 3899999999887544344666555443221111 1122211 1
Q ss_pred cCCcEEEeecCCCCCCCHHHHHHHHcCCCCcEEEecCCCCCCCCCCHHHHhccccCcEEEeeCCCC
Q 007802 408 IKPTMLMGTSGVGKTFTKEVVEAMASFNEKPVIFALSNPTSQSECTAEEAYTWSKGQAIFASGSPF 473 (589)
Q Consensus 408 vkPtvLIG~S~~~g~Fteevv~~Ma~~~erPIIFaLSNPt~~~E~t~eda~~wT~GraifAsGSPf 473 (589)
-+=||+|-=|+ |+++-.+.+. .+++ -+|-.+.-+||||
T Consensus 138 ~~fDVIIvDs~----~~~~fy~~~~-----------------------~~L~-~~Gi~v~Qs~sp~ 175 (262)
T PRK00536 138 KKYDLIICLQE----PDIHKIDGLK-----------------------RMLK-EDGVFISVAKHPL 175 (262)
T ss_pred CcCCEEEEcCC----CChHHHHHHH-----------------------HhcC-CCcEEEECCCCcc
Confidence 25788886553 6666554443 2333 3677777788887
No 276
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=60.31 E-value=26 Score=41.41 Aligned_cols=107 Identities=14% Similarity=0.093 Sum_probs=64.6
Q ss_pred HHHhccCCcEEEeecCCCCCCCHHHHHHHHcCCCCcEEEecCCCCC--------CCCCCHHHHhccccCcEEEeeCCCCC
Q 007802 403 DAVKAIKPTMLMGTSGVGKTFTKEVVEAMASFNEKPVIFALSNPTS--------QSECTAEEAYTWSKGQAIFASGSPFD 474 (589)
Q Consensus 403 e~V~~vkPtvLIG~S~~~g~Fteevv~~Ma~~~erPIIFaLSNPt~--------~~E~t~eda~~wT~GraifAsGSPf~ 474 (589)
++=+.++|+++|..+|.. +.-.-+....++-+|=|.+=..||.. ..+-|.++.+++.-. |+..-=..
T Consensus 413 ~l~~~~~~~~ilasNTSs--l~i~~la~~~~~p~r~~g~Hff~P~~~~~lVEvv~g~~T~~~~~~~~~~---~~~~lgk~ 487 (715)
T PRK11730 413 EVEQKVREDTILASNTST--ISISLLAKALKRPENFCGMHFFNPVHRMPLVEVIRGEKTSDETIATVVA---YASKMGKT 487 (715)
T ss_pred HHHhhCCCCcEEEEcCCC--CCHHHHHhhcCCCccEEEEecCCcccccceEEeeCCCCCCHHHHHHHHH---HHHHhCCc
Confidence 344557899999877743 55444444444555668889999973 234454444443211 11222245
Q ss_pred cceeCCeeeCCCCccccccchhhhHHHHHhCCcccCHHHHHHHH
Q 007802 475 PVEYNGKVFVPGQGNNAYIFPGLGLGLIISGAIRVRDEMLLAAS 518 (589)
Q Consensus 475 pv~~~G~~~~p~Q~NN~~iFPGiglG~~~~~a~~Itd~m~~aAA 518 (589)
||..+ ..||-.=|-..+|-+--++.+...- .+.+.+-+|.
T Consensus 488 pv~v~---d~pGfv~nRi~~~~~~ea~~lv~~G-a~~e~ID~a~ 527 (715)
T PRK11730 488 PIVVN---DCPGFFVNRVLFPYFAGFSQLLRDG-ADFRQIDKVM 527 (715)
T ss_pred eEEec---CcCchhHHHHHHHHHHHHHHHHHcC-CCHHHHHHHH
Confidence 66552 6789999999999877665555444 6666666654
No 277
>TIGR03693 ocin_ThiF_like putative thiazole-containing bacteriocin maturation protein. Members of this protein family are found in a three-gene operon in Bacillus anthracis and related Bacillus species, where the other two genes are clearly identified with maturation of a putative thiazole-containing bacteriocin precursor. While there is no detectable pairwise sequence similarity between members of this family and the proposed cyclodehydratases such as SagC of Streptococcus pyogenes (see family TIGR03603), both families show similarity through PSI-BLAST to ThiF, a protein involved in biosynthesis of the thiazole moiety for thiamine biosynthesis. This family, therefore, may contribute to cyclodehydratase function in heterocycle-containing bacteriocin biosyntheses. In Bacillus licheniformis ATCC 14580, the bacteriocin precursor gene is adjacent to the gene for this protein.
Probab=60.04 E-value=44 Score=39.23 Aligned_cols=104 Identities=16% Similarity=0.192 Sum_probs=58.8
Q ss_pred HHHHHHcCCCceeccCCCchHHHHHHHHHHHHHHhCCCCCCceEEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeEE
Q 007802 289 ELLSKYSSSHLVFNDDIQGTASVVLAGILSALKLVGGTLADQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIW 368 (589)
Q Consensus 289 ~iL~ryr~~~~~FnDDiQGTaaV~lAgll~Alr~~g~~l~d~riv~~GAGsAg~GiA~ll~~~~~~~~G~s~eeA~~~i~ 368 (589)
.+++||..++=-|+-... .++.|-. ..++.||+++|.|..|.-+.-.|+. .|+ .+|.
T Consensus 101 a~lERYaaqI~F~~~fs~----------s~~~rF~--~qR~akVlVlG~Gg~~s~lv~sL~~-----sG~------~~I~ 157 (637)
T TIGR03693 101 ALLDRYAAQIEFIEADAD----------SGALKFE--LSRNAKILAAGSGDFLTKLVRSLID-----SGF------PRFH 157 (637)
T ss_pred HHHHHHHHHHHHHHHhcc----------Cchhhhh--hhhcccEEEEecCchHHHHHHHHHh-----cCC------CcEE
Confidence 478999877655543321 1122222 2389999999999877766665544 487 7898
Q ss_pred EEcccCcccCCcccCCchhchhhhcc-cC----------CCCCHHHHHhccCCcEEEeecCCC
Q 007802 369 LVDSKGLIVSSRKESLQHFKKPWAHE-HA----------PIKSLLDAVKAIKPTMLMGTSGVG 420 (589)
Q Consensus 369 ~vD~~GLv~~~r~~~l~~~k~~fa~~-~~----------~~~~L~e~V~~vkPtvLIG~S~~~ 420 (589)
.+|.+=.. .+.. .+.+. .+-|++ .+ ...++.|+++. -|++|=+|..+
T Consensus 158 ~vd~D~v~-SNln-RIgEl-~e~A~~~n~~v~v~~i~~~~~~dl~ev~~~--~DiVi~vsDdy 215 (637)
T TIGR03693 158 AIVTDAEE-HALD-RIHEL-AEIAEETDDALLVQEIDFAEDQHLHEAFEP--ADWVLYVSDNG 215 (637)
T ss_pred EEeccccc-hhhh-HHHHH-HHHHHHhCCCCceEeccCCcchhHHHhhcC--CcEEEEECCCC
Confidence 88776442 2111 01122 333333 11 12356677765 47777666655
No 278
>PRK15181 Vi polysaccharide biosynthesis protein TviC; Provisional
Probab=59.48 E-value=37 Score=35.73 Aligned_cols=105 Identities=15% Similarity=0.203 Sum_probs=63.2
Q ss_pred hCCCCCCceEEEeCc-ChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEcccCcccCCcccCCchh----------chhh
Q 007802 323 VGGTLADQTFLFLGA-GEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLIVSSRKESLQHF----------KKPW 391 (589)
Q Consensus 323 ~g~~l~d~riv~~GA-GsAg~GiA~ll~~~~~~~~G~s~eeA~~~i~~vD~~GLv~~~r~~~l~~~----------k~~f 391 (589)
++..++..||+|.|| |-.|.-+++.|+.. | .+++.+|+. ..+....+... +..|
T Consensus 9 ~~~~~~~~~vlVtGatGfiG~~lv~~L~~~-----g-------~~V~~~d~~---~~~~~~~~~~~~~~~~~~~~~~~~~ 73 (348)
T PRK15181 9 TKLVLAPKRWLITGVAGFIGSGLLEELLFL-----N-------QTVIGLDNF---STGYQHNLDDVRTSVSEEQWSRFIF 73 (348)
T ss_pred hcccccCCEEEEECCccHHHHHHHHHHHHC-----C-------CEEEEEeCC---CCcchhhhhhhhhccccccCCceEE
Confidence 455677899999997 99998888887652 4 357777753 11110011110 0111
Q ss_pred hc-ccCCCCCHHHHHhccCCcEEEeecCCCCC----------------CCHHHHHHHHcCCCCcEEEecC
Q 007802 392 AH-EHAPIKSLLDAVKAIKPTMLMGTSGVGKT----------------FTKEVVEAMASFNEKPVIFALS 444 (589)
Q Consensus 392 a~-~~~~~~~L~e~V~~vkPtvLIG~S~~~g~----------------Fteevv~~Ma~~~erPIIFaLS 444 (589)
-. +-.+...|.++++. ||++|=+.+.... .|..+++.+.++.-+.+||+=|
T Consensus 74 ~~~Di~d~~~l~~~~~~--~d~ViHlAa~~~~~~~~~~~~~~~~~Nv~gt~nll~~~~~~~~~~~v~~SS 141 (348)
T PRK15181 74 IQGDIRKFTDCQKACKN--VDYVLHQAALGSVPRSLKDPIATNSANIDGFLNMLTAARDAHVSSFTYAAS 141 (348)
T ss_pred EEccCCCHHHHHHHhhC--CCEEEECccccCchhhhhCHHHHHHHHHHHHHHHHHHHHHcCCCeEEEeec
Confidence 11 11112356777774 9999988875432 2457888888765568998754
No 279
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=59.47 E-value=6.5 Score=41.31 Aligned_cols=36 Identities=11% Similarity=0.250 Sum_probs=26.8
Q ss_pred eEEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEcccCc
Q 007802 331 TFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGL 375 (589)
Q Consensus 331 riv~~GAGsAg~GiA~ll~~~~~~~~G~s~eeA~~~i~~vD~~GL 375 (589)
+|||+|+|.||+-.|+.+..... ...+|.++|++.-
T Consensus 1 ~vvIiGgG~aG~~~a~~l~~~~~---------~~~~I~li~~~~~ 36 (364)
T TIGR03169 1 HLVLIGGGHTHALVLRRWAMKPL---------PGVRVTLINPSST 36 (364)
T ss_pred CEEEECCcHHHHHHHHHhcCcCC---------CCCEEEEECCCCC
Confidence 58999999999999887754210 1357999997654
No 280
>PF05834 Lycopene_cycl: Lycopene cyclase protein; InterPro: IPR008671 This family consists of lycopene beta and epsilon cyclase proteins. Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare [].; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process
Probab=59.43 E-value=12 Score=40.23 Aligned_cols=35 Identities=29% Similarity=0.415 Sum_probs=26.9
Q ss_pred EEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEcccCcc
Q 007802 332 FLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLI 376 (589)
Q Consensus 332 iv~~GAGsAg~GiA~ll~~~~~~~~G~s~eeA~~~i~~vD~~GLv 376 (589)
|+|+|||.||..+|..+.++ ..| .++.++|++--.
T Consensus 2 viIvGaGpAGlslA~~l~~~---~~g-------~~Vllid~~~~~ 36 (374)
T PF05834_consen 2 VIIVGAGPAGLSLARRLADA---RPG-------LSVLLIDPKPKP 36 (374)
T ss_pred EEEECCcHHHHHHHHHHHhc---CCC-------CEEEEEcCCccc
Confidence 78999999999999988443 123 579999987443
No 281
>PRK11883 protoporphyrinogen oxidase; Reviewed
Probab=59.21 E-value=5.5 Score=42.69 Aligned_cols=22 Identities=18% Similarity=0.296 Sum_probs=19.6
Q ss_pred ceEEEeCcChHHHHHHHHHHHH
Q 007802 330 QTFLFLGAGEAGTGIAELIALE 351 (589)
Q Consensus 330 ~riv~~GAGsAg~GiA~ll~~~ 351 (589)
.+|+|+|||-||+..|..|.+.
T Consensus 1 ~~v~IVGaGiaGL~aA~~L~~~ 22 (451)
T PRK11883 1 KKVAIIGGGITGLSAAYRLHKK 22 (451)
T ss_pred CeEEEECCCHHHHHHHHHHHHh
Confidence 4799999999999999998764
No 282
>cd00300 LDH_like L-lactate dehydrogenase-like enzymes. Members of this subfamily are tetrameric NAD-dependent 2-hydroxycarboxylate dehydrogenases including LDHs, L-2-hydroxyisocaproate dehydrogenases (L-HicDH), and LDH-like malate dehydrogenases (MDH). Dehydrogenases catalyze the conversion of carbonyl compounds to alcohols or amino acids. LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. L-HicDH catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of prot
Probab=59.07 E-value=28 Score=36.60 Aligned_cols=112 Identities=17% Similarity=0.232 Sum_probs=66.1
Q ss_pred EEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEccc-CcccCCcccCCchhchhhhccc-CCCCCHHHHHhccC
Q 007802 332 FLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSK-GLIVSSRKESLQHFKKPWAHEH-APIKSLLDAVKAIK 409 (589)
Q Consensus 332 iv~~GAGsAg~GiA~ll~~~~~~~~G~s~eeA~~~i~~vD~~-GLv~~~r~~~l~~~k~~fa~~~-~~~~~L~e~V~~vk 409 (589)
|.|+|+|..|..+|-.++. .|+. ..+.++|.+ .++..-. .+|.+....+.... ....+ .+.+++
T Consensus 1 i~iiGaG~VG~~~a~~l~~-----~~~~-----~el~l~D~~~~~~~g~~-~DL~~~~~~~~~~~i~~~~~-~~~l~~-- 66 (300)
T cd00300 1 ITIIGAGNVGAAVAFALIA-----KGLA-----SELVLVDVNEEKAKGDA-LDLSHASAFLATGTIVRGGD-YADAAD-- 66 (300)
T ss_pred CEEECCCHHHHHHHHHHHh-----cCCC-----CEEEEEeCCccHHHHHH-HhHHHhccccCCCeEEECCC-HHHhCC--
Confidence 5789999999999876654 3662 579999974 2211111 12443332221100 00134 456665
Q ss_pred CcEEEeecCCC---CC-----------CCHHHHHHHHcCCCCcEEEecCCCCCCCCCCHHHHhcc
Q 007802 410 PTMLMGTSGVG---KT-----------FTKEVVEAMASFNEKPVIFALSNPTSQSECTAEEAYTW 460 (589)
Q Consensus 410 PtvLIG~S~~~---g~-----------Fteevv~~Ma~~~erPIIFaLSNPt~~~E~t~eda~~w 460 (589)
.|++|=+.+.+ |- .=+++++.+.+++..-+|+=.|||. ++...-++++
T Consensus 67 aDiVIitag~p~~~~~~R~~l~~~n~~i~~~~~~~i~~~~p~~~viv~sNP~---d~~~~~~~~~ 128 (300)
T cd00300 67 ADIVVITAGAPRKPGETRLDLINRNAPILRSVITNLKKYGPDAIILVVSNPV---DILTYVAQKL 128 (300)
T ss_pred CCEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEccChH---HHHHHHHHHH
Confidence 78877555443 21 1246788888999999999999997 3444444444
No 283
>KOG2304 consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid transport and metabolism]
Probab=59.06 E-value=8.5 Score=40.17 Aligned_cols=32 Identities=38% Similarity=0.783 Sum_probs=26.7
Q ss_pred ceEEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEccc
Q 007802 330 QTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSK 373 (589)
Q Consensus 330 ~riv~~GAGsAg~GiA~ll~~~~~~~~G~s~eeA~~~i~~vD~~ 373 (589)
..|-|+|||-.|-|||+....+ |+ ++|++|++
T Consensus 12 ~~V~ivGaG~MGSGIAQv~a~s-----g~-------~V~l~d~~ 43 (298)
T KOG2304|consen 12 KNVAIVGAGQMGSGIAQVAATS-----GL-------NVWLVDAN 43 (298)
T ss_pred cceEEEcccccchhHHHHHHhc-----CC-------ceEEecCC
Confidence 4577999999999999988664 75 69999985
No 284
>PRK12409 D-amino acid dehydrogenase small subunit; Provisional
Probab=59.05 E-value=12 Score=40.04 Aligned_cols=33 Identities=21% Similarity=0.278 Sum_probs=27.6
Q ss_pred ceEEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEcccC
Q 007802 330 QTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKG 374 (589)
Q Consensus 330 ~riv~~GAGsAg~GiA~ll~~~~~~~~G~s~eeA~~~i~~vD~~G 374 (589)
.+|+|+|||-+|+.+|-.|.+. | .++.++|++-
T Consensus 2 ~~vvIIGaG~~G~~~A~~La~~-----g-------~~V~vle~~~ 34 (410)
T PRK12409 2 SHIAVIGAGITGVTTAYALAQR-----G-------YQVTVFDRHR 34 (410)
T ss_pred CEEEEECCCHHHHHHHHHHHHC-----C-------CeEEEEeCCC
Confidence 4899999999999999988652 5 4689999864
No 285
>PRK08618 ornithine cyclodeaminase; Validated
Probab=58.58 E-value=97 Score=32.90 Aligned_cols=105 Identities=14% Similarity=0.221 Sum_probs=60.0
Q ss_pred CCceEEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEcccCcccCCcccCCchhchhhhcc----cCCCCCHHH
Q 007802 328 ADQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLIVSSRKESLQHFKKPWAHE----HAPIKSLLD 403 (589)
Q Consensus 328 ~d~riv~~GAGsAg~GiA~ll~~~~~~~~G~s~eeA~~~i~~vD~~GLv~~~r~~~l~~~k~~fa~~----~~~~~~L~e 403 (589)
...++.|+|+|..|-.++..+... .|+ ++|.++|+. .++ .......+... .....++++
T Consensus 126 ~~~~v~iiGaG~~a~~~~~al~~~----~~~------~~v~v~~r~----~~~---a~~~~~~~~~~~~~~~~~~~~~~~ 188 (325)
T PRK08618 126 DAKTLCLIGTGGQAKGQLEAVLAV----RDI------ERVRVYSRT----FEK---AYAFAQEIQSKFNTEIYVVNSADE 188 (325)
T ss_pred CCcEEEEECCcHHHHHHHHHHHhc----CCc------cEEEEECCC----HHH---HHHHHHHHHHhcCCcEEEeCCHHH
Confidence 456899999999988777655432 244 779988875 222 22222222211 112467888
Q ss_pred HHhccCCcEEEeecCCC-CCCCHHHHHHHHcCCCCcEEEecCC-CCCCCCCCHHHHhc
Q 007802 404 AVKAIKPTMLMGTSGVG-KTFTKEVVEAMASFNEKPVIFALSN-PTSQSECTAEEAYT 459 (589)
Q Consensus 404 ~V~~vkPtvLIG~S~~~-g~Fteevv~~Ma~~~erPIIFaLSN-Pt~~~E~t~eda~~ 459 (589)
+++. .|++|-++..+ ..|+ +.++ +.--|.++-- --.+.|+.+ +.+.
T Consensus 189 ~~~~--aDiVi~aT~s~~p~i~-~~l~------~G~hV~~iGs~~p~~~E~~~-~~~~ 236 (325)
T PRK08618 189 AIEE--ADIIVTVTNAKTPVFS-EKLK------KGVHINAVGSFMPDMQELPS-EAIA 236 (325)
T ss_pred HHhc--CCEEEEccCCCCcchH-HhcC------CCcEEEecCCCCcccccCCH-HHHh
Confidence 8875 89888665432 2333 3332 3445656633 224678887 4443
No 286
>cd00377 ICL_PEPM Members of the ICL/PEPM enzyme family catalyze either P-C or C-C bond formation/cleavage. Known members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), and 2-methylisocitrate lyase (MICL). Isocitrate lyase (ICL) catalyzes the conversion of isocitrate to succinate and glyoxylate, the first committed step in the glyoxylate pathway. This carbon-conserving pathway is present in most prokaryotes, lower eukaryotes and plants, but has not been observed in vertebrates. PEP mutase (PEPM) turns phosphoenolpyruvate (PEP) into phosphonopyruvate (P-pyr), an important intermediate in the formation of organophosphonates, which function as antibiotics or play a role in pathogenesis or signaling. P-pyr can be hydrolyzed by phosphonopyruvate hydrolase (PPH) to from pyruvate and phosphate. Oxaloacetate acetylhydrolase (OAH) catalyzes the hydrolytic cleavage of oxaloacetate to
Probab=57.19 E-value=2.3e+02 Score=29.02 Aligned_cols=44 Identities=18% Similarity=0.149 Sum_probs=32.5
Q ss_pred CCHHHHHHHHcCCCCcEEEecCCCCCCCCCCHHHHhccccCcEEEeeC
Q 007802 423 FTKEVVEAMASFNEKPVIFALSNPTSQSECTAEEAYTWSKGQAIFASG 470 (589)
Q Consensus 423 Fteevv~~Ma~~~erPIIFaLSNPt~~~E~t~eda~~wT~GraifAsG 470 (589)
.+++.++..++..+.|+++-++.... +.++++.-++ |-.++.-|
T Consensus 183 ~~~~~~~~~~~~~~~Pl~~~~~~~~~--~~~~~~l~~l--G~~~v~~~ 226 (243)
T cd00377 183 KDPEEIRAFAEAPDVPLNVNMTPGGN--LLTVAELAEL--GVRRVSYG 226 (243)
T ss_pred CCHHHHHHHHhcCCCCEEEEecCCCC--CCCHHHHHHC--CCeEEEEC
Confidence 38899999998889999987655442 6899999887 54444433
No 287
>COG0240 GpsA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=57.00 E-value=23 Score=38.39 Aligned_cols=95 Identities=17% Similarity=0.330 Sum_probs=52.0
Q ss_pred ceEEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEcccCc--ccCCcccCCchhchhhhcc---cCC---CCCH
Q 007802 330 QTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGL--IVSSRKESLQHFKKPWAHE---HAP---IKSL 401 (589)
Q Consensus 330 ~riv~~GAGsAg~GiA~ll~~~~~~~~G~s~eeA~~~i~~vD~~GL--v~~~r~~~l~~~k~~fa~~---~~~---~~~L 401 (589)
.+|.++|||+=|+.+|..+.+. |- .=++|..|.+=. |..+|. ..+|... ++. ..+|
T Consensus 2 ~kI~ViGaGswGTALA~~la~n-----g~-----~V~lw~r~~~~~~~i~~~~~------N~~yLp~i~lp~~l~at~Dl 65 (329)
T COG0240 2 MKIAVIGAGSWGTALAKVLARN-----GH-----EVRLWGRDEEIVAEINETRE------NPKYLPGILLPPNLKATTDL 65 (329)
T ss_pred ceEEEEcCChHHHHHHHHHHhc-----CC-----eeEEEecCHHHHHHHHhcCc------CccccCCccCCcccccccCH
Confidence 5899999999999999999763 41 235777664310 111111 1112211 111 2478
Q ss_pred HHHHhccCCcEEEeecCCCCCCCHHHHHHHHc-CCCCcEEEecC
Q 007802 402 LDAVKAIKPTMLMGTSGVGKTFTKEVVEAMAS-FNEKPVIFALS 444 (589)
Q Consensus 402 ~e~V~~vkPtvLIG~S~~~g~Fteevv~~Ma~-~~erPIIFaLS 444 (589)
.++++. ---+|++++++ |-+++++.|.. ..++.+|.-+|
T Consensus 66 ~~a~~~-ad~iv~avPs~---~~r~v~~~l~~~l~~~~~iv~~s 105 (329)
T COG0240 66 AEALDG-ADIIVIAVPSQ---ALREVLRQLKPLLLKDAIIVSAT 105 (329)
T ss_pred HHHHhc-CCEEEEECChH---HHHHHHHHHhhhccCCCeEEEEe
Confidence 888875 12344555553 56777777742 22444444443
No 288
>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional
Probab=56.83 E-value=56 Score=35.50 Aligned_cols=33 Identities=15% Similarity=0.408 Sum_probs=26.7
Q ss_pred CceEEEeC-cChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEccc
Q 007802 329 DQTFLFLG-AGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSK 373 (589)
Q Consensus 329 d~riv~~G-AGsAg~GiA~ll~~~~~~~~G~s~eeA~~~i~~vD~~ 373 (589)
..+|.|+| +|..|-.+|..+..+ |. .++++|++
T Consensus 98 ~~~I~IiGG~GlmG~slA~~l~~~-----G~-------~V~~~d~~ 131 (374)
T PRK11199 98 LRPVVIVGGKGQLGRLFAKMLTLS-----GY-------QVRILEQD 131 (374)
T ss_pred cceEEEEcCCChhhHHHHHHHHHC-----CC-------eEEEeCCC
Confidence 47899999 999999999988653 53 48888874
No 289
>TIGR03376 glycerol3P_DH glycerol-3-phosphate dehydrogenase (NAD(+)). Members of this protein family are the eukaryotic enzyme, glycerol-3-phosphate dehydrogenase (NAD(+)) (EC 1.1.1.8). Enzymatic activity for 1.1.1.8 is defined as sn-glycerol 3-phosphate + NAD(+) = glycerone phosphate + NADH. Note the very similar reactions of enzymes defined as EC 1.1.1.94 and 1.1.99.5, assigned to families of proteins in the bacteria.
Probab=56.72 E-value=22 Score=38.38 Aligned_cols=20 Identities=35% Similarity=0.582 Sum_probs=18.2
Q ss_pred eEEEeCcChHHHHHHHHHHH
Q 007802 331 TFLFLGAGEAGTGIAELIAL 350 (589)
Q Consensus 331 riv~~GAGsAg~GiA~ll~~ 350 (589)
||.|+|||+-|+.+|..+..
T Consensus 1 kI~VIGaG~wGtALA~~la~ 20 (342)
T TIGR03376 1 RVAVVGSGNWGTAIAKIVAE 20 (342)
T ss_pred CEEEECcCHHHHHHHHHHHH
Confidence 68999999999999999865
No 290
>TIGR02028 ChlP geranylgeranyl reductase. This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll.
Probab=56.69 E-value=12 Score=40.40 Aligned_cols=31 Identities=29% Similarity=0.490 Sum_probs=24.0
Q ss_pred eEEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEccc
Q 007802 331 TFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSK 373 (589)
Q Consensus 331 riv~~GAGsAg~GiA~ll~~~~~~~~G~s~eeA~~~i~~vD~~ 373 (589)
+|+|+|||.||...|..+.. .|+ ++.++|++
T Consensus 2 ~VvIVGaGPAG~~aA~~la~-----~G~-------~V~llE~~ 32 (398)
T TIGR02028 2 RVAVVGGGPAGASAAETLAS-----AGI-------QTFLLERK 32 (398)
T ss_pred eEEEECCcHHHHHHHHHHHh-----CCC-------cEEEEecC
Confidence 68999999999999988764 364 36666664
No 291
>PRK12828 short chain dehydrogenase; Provisional
Probab=56.59 E-value=22 Score=34.14 Aligned_cols=36 Identities=22% Similarity=0.364 Sum_probs=23.6
Q ss_pred CCCCceEEEeCc-ChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEccc
Q 007802 326 TLADQTFLFLGA-GEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSK 373 (589)
Q Consensus 326 ~l~d~riv~~GA-GsAg~GiA~ll~~~~~~~~G~s~eeA~~~i~~vD~~ 373 (589)
++++.+++|.|| |..|..+++.++ + +|. +++++|++
T Consensus 4 ~~~~k~vlItGatg~iG~~la~~l~----~-~G~-------~v~~~~r~ 40 (239)
T PRK12828 4 SLQGKVVAITGGFGGLGRATAAWLA----A-RGA-------RVALIGRG 40 (239)
T ss_pred CCCCCEEEEECCCCcHhHHHHHHHH----H-CCC-------eEEEEeCC
Confidence 467789999997 545555555543 3 363 58888875
No 292
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=56.52 E-value=15 Score=39.93 Aligned_cols=36 Identities=31% Similarity=0.490 Sum_probs=28.1
Q ss_pred CCCCceEEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEccc
Q 007802 326 TLADQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSK 373 (589)
Q Consensus 326 ~l~d~riv~~GAGsAg~GiA~ll~~~~~~~~G~s~eeA~~~i~~vD~~ 373 (589)
.+++.+++|+|+|.+|.++|+.|... | .+++++|++
T Consensus 2 ~~~~k~v~iiG~g~~G~~~A~~l~~~-----G-------~~V~~~d~~ 37 (450)
T PRK14106 2 ELKGKKVLVVGAGVSGLALAKFLKKL-----G-------AKVILTDEK 37 (450)
T ss_pred CcCCCEEEEECCCHHHHHHHHHHHHC-----C-------CEEEEEeCC
Confidence 46789999999999999999988753 5 346666664
No 293
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=56.41 E-value=11 Score=41.19 Aligned_cols=33 Identities=18% Similarity=0.263 Sum_probs=25.6
Q ss_pred eEEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEccc
Q 007802 331 TFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSK 373 (589)
Q Consensus 331 riv~~GAGsAg~GiA~ll~~~~~~~~G~s~eeA~~~i~~vD~~ 373 (589)
||||+|+|.||+..|+.|.+. +- .-+|.++|+.
T Consensus 3 ~VVIIGgG~aG~~aA~~l~~~-----~~-----~~~I~li~~~ 35 (438)
T PRK13512 3 KIIVVGAVAGGATCASQIRRL-----DK-----ESDIIIFEKD 35 (438)
T ss_pred eEEEECCcHHHHHHHHHHHhh-----CC-----CCCEEEEECC
Confidence 899999999999999998642 11 1358888775
No 294
>PLN00112 malate dehydrogenase (NADP); Provisional
Probab=56.36 E-value=42 Score=37.79 Aligned_cols=112 Identities=11% Similarity=0.014 Sum_probs=65.6
Q ss_pred CceEEEeCc-ChHHHHHHHHHHHH-HH-hccCCCHHhhcCeEEEEcccCcccCCcccCCchhchhhhcccCCCCCHHHHH
Q 007802 329 DQTFLFLGA-GEAGTGIAELIALE-MS-KQTKAPIEEARKKIWLVDSKGLIVSSRKESLQHFKKPWAHEHAPIKSLLDAV 405 (589)
Q Consensus 329 d~riv~~GA-GsAg~GiA~ll~~~-~~-~~~G~s~eeA~~~i~~vD~~GLv~~~r~~~l~~~k~~fa~~~~~~~~L~e~V 405 (589)
=.||.|+|| |..|..+|-.|+.. +. ..+|+ -..+.++|.+-=..++-.-+|.+-.-++-++-.-..+-.+..
T Consensus 100 ~~KV~IIGAaG~VG~~~A~~L~~~~v~g~~~~i-----~~eLvliD~~~~~a~G~amDL~daa~~~~~~v~i~~~~ye~~ 174 (444)
T PLN00112 100 LINVAVSGAAGMISNHLLFKLASGEVFGPDQPI-----ALKLLGSERSKQALEGVAMELEDSLYPLLREVSIGIDPYEVF 174 (444)
T ss_pred CeEEEEECCCcHHHHHHHHHHHhcccccCCCCc-----ccEEEEEcCCcchhHHHHHHHHHhhhhhcCceEEecCCHHHh
Confidence 379999999 99999999988653 10 01133 246888887522211111113322222222100012334666
Q ss_pred hccCCcEEEeecCCC---CC-----------CCHHHHHHHHc-CCCCcEEEecCCCC
Q 007802 406 KAIKPTMLMGTSGVG---KT-----------FTKEVVEAMAS-FNEKPVIFALSNPT 447 (589)
Q Consensus 406 ~~vkPtvLIG~S~~~---g~-----------Fteevv~~Ma~-~~erPIIFaLSNPt 447 (589)
+. .|++|=+.+.+ |- .=+++.+.+.+ .+..-||+-.|||-
T Consensus 175 kd--aDiVVitAG~prkpG~tR~dLl~~N~~I~k~i~~~I~~~a~p~~ivIVVsNPv 229 (444)
T PLN00112 175 QD--AEWALLIGAKPRGPGMERADLLDINGQIFAEQGKALNEVASRNVKVIVVGNPC 229 (444)
T ss_pred Cc--CCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEcCCcH
Confidence 65 88888666654 21 12467778888 58999999999997
No 295
>PRK14852 hypothetical protein; Provisional
Probab=56.36 E-value=23 Score=43.49 Aligned_cols=38 Identities=18% Similarity=0.092 Sum_probs=33.5
Q ss_pred CCCCCceEEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEccc
Q 007802 325 GTLADQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSK 373 (589)
Q Consensus 325 ~~l~d~riv~~GAGsAg~GiA~ll~~~~~~~~G~s~eeA~~~i~~vD~~ 373 (589)
.+|+..||+|+|+|..|.-||..|+.+ |+ ++|.++|-+
T Consensus 328 ~kL~~srVlVvGlGGlGs~ia~~LAra-----GV------G~I~L~D~D 365 (989)
T PRK14852 328 RRLLRSRVAIAGLGGVGGIHLMTLART-----GI------GNFNLADFD 365 (989)
T ss_pred HHHhcCcEEEECCcHHHHHHHHHHHHc-----CC------CeEEEEcCC
Confidence 579999999999999999999888764 87 789999987
No 296
>PRK05866 short chain dehydrogenase; Provisional
Probab=56.18 E-value=30 Score=35.59 Aligned_cols=39 Identities=23% Similarity=0.336 Sum_probs=25.4
Q ss_pred CCCCCCceEEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEccc
Q 007802 324 GGTLADQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSK 373 (589)
Q Consensus 324 g~~l~d~riv~~GAGsAg~GiA~ll~~~~~~~~G~s~eeA~~~i~~vD~~ 373 (589)
+.++++.++||.||++ ||...++..+.+ .| .+++++|++
T Consensus 35 ~~~~~~k~vlItGasg---gIG~~la~~La~-~G-------~~Vi~~~R~ 73 (293)
T PRK05866 35 PVDLTGKRILLTGASS---GIGEAAAEQFAR-RG-------ATVVAVARR 73 (293)
T ss_pred CcCCCCCEEEEeCCCc---HHHHHHHHHHHH-CC-------CEEEEEECC
Confidence 4557788999999843 444455554444 36 368888875
No 297
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=55.85 E-value=19 Score=40.65 Aligned_cols=103 Identities=19% Similarity=0.326 Sum_probs=62.7
Q ss_pred CCCCcccchhhhHHHHhhhcCCCCCCeeeEEe-ecCCCccccccCcccccccccCCChhhHHHHHHHHHHHHHHhcCCce
Q 007802 197 LGCQGMGIPVGKLSLYTALGGLRPSACLPITI-DVGTNNEQLLNDEFYIGLRQKRATGQEYAELLQEFMTAVKQNYGEKV 275 (589)
Q Consensus 197 lG~~GmgI~iGKl~LY~a~gGI~P~~~lPI~L-DvGTnn~~LL~Dp~YlG~r~~R~~g~~y~~fidefv~av~~~fGp~~ 275 (589)
.|+-|. ||.++-.|.|+-==-...-+.| .|+.| .+ +... +..+= ++.
T Consensus 241 YGPPGT----GKSS~IaAmAn~L~ydIydLeLt~v~~n-~d-----------------------Lr~L---L~~t~-~kS 288 (457)
T KOG0743|consen 241 YGPPGT----GKSSFIAAMANYLNYDIYDLELTEVKLD-SD-----------------------LRHL---LLATP-NKS 288 (457)
T ss_pred eCCCCC----CHHHHHHHHHhhcCCceEEeeeccccCc-HH-----------------------HHHH---HHhCC-CCc
Confidence 466553 7999999999865333556666 56643 22 1222 23333 788
Q ss_pred eeEeecCCCccHHHHHHHHcCCCceeccCCCchHHHHHHHHHHHHHHhCCCCCCceEEEeC
Q 007802 276 LIQFEDFANHNAFELLSKYSSSHLVFNDDIQGTASVVLAGILSALKLVGGTLADQTFLFLG 336 (589)
Q Consensus 276 lIq~EDf~~~~Af~iL~ryr~~~~~FnDDiQGTaaV~lAgll~Alr~~g~~l~d~riv~~G 336 (589)
+|-.|||.. +|.+=++-.++-.-|++ .-.-|||.||||++--.-..=.+.||+||=
T Consensus 289 IivIEDIDc--s~~l~~~~~~~~~~~~~---~~~~VTlSGLLNfiDGlwSscg~ERIivFT 344 (457)
T KOG0743|consen 289 ILLIEDIDC--SFDLRERRKKKKENFEG---DLSRVTLSGLLNFLDGLWSSCGDERIIVFT 344 (457)
T ss_pred EEEEeeccc--ccccccccccccccccC---CcceeehHHhhhhhccccccCCCceEEEEe
Confidence 999999964 34443333333333333 466799999999876444444466777664
No 298
>cd01490 Ube1_repeat2 Ubiquitin activating enzyme (E1), repeat 2. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the second repeat of Ub-E1.
Probab=55.61 E-value=18 Score=40.59 Aligned_cols=37 Identities=24% Similarity=0.334 Sum_probs=29.3
Q ss_pred eEEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEccc
Q 007802 331 TFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSK 373 (589)
Q Consensus 331 riv~~GAGsAg~GiA~ll~~~~~~~~G~s~eeA~~~i~~vD~~ 373 (589)
||+++|||..|+-+++.|+.+ |+...+ .++|.++|.+
T Consensus 1 kVlvVGaGGlGcE~lKnLal~-----Gv~~g~-~G~I~IvD~D 37 (435)
T cd01490 1 KVFLVGAGAIGCELLKNFALM-----GVGTGE-SGEITVTDMD 37 (435)
T ss_pred CEEEECCCHHHHHHHHHHHHc-----CCCcCC-CCeEEEECCC
Confidence 689999999999999999875 652211 2689999987
No 299
>PF13454 NAD_binding_9: FAD-NAD(P)-binding
Probab=55.59 E-value=11 Score=35.47 Aligned_cols=36 Identities=17% Similarity=0.278 Sum_probs=28.0
Q ss_pred EEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEcccCc
Q 007802 333 LFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGL 375 (589)
Q Consensus 333 v~~GAGsAg~GiA~ll~~~~~~~~G~s~eeA~~~i~~vD~~GL 375 (589)
+|+|+|.+|+.+++.|+... .....-+|.++|.++.
T Consensus 1 AIIG~G~~G~~~l~~L~~~~-------~~~~~~~I~vfd~~~~ 36 (156)
T PF13454_consen 1 AIIGGGPSGLAVLERLLRQA-------DPKPPLEITVFDPSPF 36 (156)
T ss_pred CEECcCHHHHHHHHHHHHhc-------CCCCCCEEEEEcCCCc
Confidence 48999999999999998864 1123467999999755
No 300
>KOG2012 consensus Ubiquitin activating enzyme UBA1 [Posttranslational modification, protein turnover, chaperones]
Probab=55.42 E-value=7.1 Score=46.75 Aligned_cols=130 Identities=23% Similarity=0.324 Sum_probs=77.9
Q ss_pred HHcCCCceeccCCCchHHHHHHHHHHHHHHhCCCCCCceEEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEcc
Q 007802 293 KYSSSHLVFNDDIQGTASVVLAGILSALKLVGGTLADQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDS 372 (589)
Q Consensus 293 ryr~~~~~FnDDiQGTaaV~lAgll~Alr~~g~~l~d~riv~~GAGsAg~GiA~ll~~~~~~~~G~s~eeA~~~i~~vD~ 372 (589)
||-.++.||.++.| ++|.++++.++|||+.||-.-+-+.. .|+.--+- +.|.+.|-
T Consensus 412 RYD~qiavfG~~fq------------------eKL~~~~~FlVGaGAIGCE~LKN~am-----~Gvg~g~~-g~ItVTDm 467 (1013)
T KOG2012|consen 412 RYDGQIAVFGAKFQ------------------EKLADQKVFLVGAGAIGCELLKNFAL-----MGVGCGNS-GKITVTDM 467 (1013)
T ss_pred ccccchhhhchHHH------------------HHHhhCcEEEEccchhhHHHHHhhhh-----eeeccCCC-CceEEecc
Confidence 56666666666554 68999999999999999876665543 25532111 24666665
Q ss_pred cCcccCCcccCCchhchhhhccc--CCC--CCHHHHHhccCCcEEEe-------ecCCCCCCCHHHHHHHHcCCCCcEEE
Q 007802 373 KGLIVSSRKESLQHFKKPWAHEH--API--KSLLDAVKAIKPTMLMG-------TSGVGKTFTKEVVEAMASFNEKPVIF 441 (589)
Q Consensus 373 ~GLv~~~r~~~l~~~k~~fa~~~--~~~--~~L~e~V~~vkPtvLIG-------~S~~~g~Fteevv~~Ma~~~erPIIF 441 (589)
+ +|.++ +|+..- -| |+. ... ..-++|+....|++.|= --+ -++|+.+--+..- =++=
T Consensus 468 D-~IEkS---NLnRQF-LF-R~~dVgk~KSe~AA~A~~~mNp~l~I~a~~~rvgpeT-E~If~D~Ff~~ld-----~Van 535 (1013)
T KOG2012|consen 468 D-HIEKS---NLNRQF-LF-RPWDVGKPKSEVAAAAARGMNPDLNIIALQNRVGPET-EHIFNDEFFENLD-----GVAN 535 (1013)
T ss_pred c-hhhhc---ccccee-ec-cccccCchHHHHHHHHHHhcCCCceeeehhhccCccc-ccccchhHHhhhH-----HHHH
Confidence 5 23322 354221 12 321 111 24668899999999873 233 2477777666542 2333
Q ss_pred ecCCCCCCCCCCHHHHhccccCcEEE
Q 007802 442 ALSNPTSQSECTAEEAYTWSKGQAIF 467 (589)
Q Consensus 442 aLSNPt~~~E~t~eda~~wT~Graif 467 (589)
||=|= ||-.|-|+||+|
T Consensus 536 ALDNV---------dAR~YvD~RCv~ 552 (1013)
T KOG2012|consen 536 ALDNV---------DARRYVDRRCVY 552 (1013)
T ss_pred hhcch---------hhhhhhhhhhhh
Confidence 45552 577788899987
No 301
>TIGR02023 BchP-ChlP geranylgeranyl reductase. This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ).
Probab=55.12 E-value=14 Score=39.47 Aligned_cols=31 Identities=23% Similarity=0.366 Sum_probs=23.6
Q ss_pred eEEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEccc
Q 007802 331 TFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSK 373 (589)
Q Consensus 331 riv~~GAGsAg~GiA~ll~~~~~~~~G~s~eeA~~~i~~vD~~ 373 (589)
.|+|+|||.||+..|..+.+. |+ ++.++|++
T Consensus 2 DVvIVGaGpAG~~aA~~La~~-----G~-------~V~l~E~~ 32 (388)
T TIGR02023 2 DVAVIGGGPSGATAAETLARA-----GI-------ETILLERA 32 (388)
T ss_pred eEEEECCCHHHHHHHHHHHhC-----CC-------cEEEEECC
Confidence 489999999999999887642 54 36666665
No 302
>TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog.
Probab=55.01 E-value=2e+02 Score=34.15 Aligned_cols=156 Identities=14% Similarity=0.084 Sum_probs=89.5
Q ss_pred HHHHHhccCCcEEEeecCCCCCCCHHHHHHHHcCCCCcEEEecCCCCCC--------CCCCHHHHhccccCcEEEeeCCC
Q 007802 401 LLDAVKAIKPTMLMGTSGVGKTFTKEVVEAMASFNEKPVIFALSNPTSQ--------SECTAEEAYTWSKGQAIFASGSP 472 (589)
Q Consensus 401 L~e~V~~vkPtvLIG~S~~~g~Fteevv~~Ma~~~erPIIFaLSNPt~~--------~E~t~eda~~wT~GraifAsGSP 472 (589)
+.++-+.++|+++|..+|.. +.-.-+.+-.++-+|=|.+=.-||... .+-|.++.+++... |+..-=
T Consensus 403 ~~~l~~~~~~~~ilasnTS~--l~i~~la~~~~~p~r~~g~HffnP~~~~~lVEvv~g~~T~~~~~~~~~~---~~~~~g 477 (699)
T TIGR02440 403 VKDIEQECAAHTIFASNTSS--LPIGQIAAAASRPENVIGLHYFSPVEKMPLVEVIPHAGTSEQTIATTVA---LAKKQG 477 (699)
T ss_pred HHHHHhhCCCCcEEEeCCCC--CCHHHHHHhcCCcccEEEEecCCccccCceEEEeCCCCCCHHHHHHHHH---HHHHcC
Confidence 33444567899999887743 444333333356677788888999743 34455666554321 222222
Q ss_pred CCcceeCCeeeCCCCccccccchhhhHHHHHhCCcccCHHHHHHHHHHHHhccCcccCCCCCccCCCCCchhhHHHHHHH
Q 007802 473 FDPVEYNGKVFVPGQGNNAYIFPGLGLGLIISGAIRVRDEMLLAASEALAAQVTQEHFDKGLIYPPFTNIRKISAHIAAK 552 (589)
Q Consensus 473 f~pv~~~G~~~~p~Q~NN~~iFPGiglG~~~~~a~~Itd~m~~aAA~aLA~~v~~~~l~~g~l~P~l~~ireVs~~VA~a 552 (589)
..||..+ ..||..=|-.++|-+--++.+..-- ++.+-+-.|.+.+ .+ . ..|+.-+..+-..+...
T Consensus 478 k~pv~v~---d~pGfi~nRl~~~~~~Ea~~l~~~G-~~~~dID~a~~~~-G~------p----~GPf~l~D~vGld~~~~ 542 (699)
T TIGR02440 478 KTPIVVA---DKAGFYVNRILAPYMNEAARLLLEG-EPVEHIDKALVKF-GF------P----VGPITLLDEVGIDVGAK 542 (699)
T ss_pred CeEEEEc---cccchHHHHHHHHHHHHHHHHHHCC-CCHHHHHHHHHHc-CC------C----cCHHHHHHHhchHHHHH
Confidence 4566663 4689999999999888777666543 5777777766421 11 1 23444444455556666
Q ss_pred HHHHHHHc-CCCCCCCCchhHHHHHHh
Q 007802 553 VAAKAYDL-GLASRLPRPKDLVSYAES 578 (589)
Q Consensus 553 Va~~A~~~-GvA~~~~~p~dl~~~i~~ 578 (589)
|.+..+++ |- ....|+-+.+.|++
T Consensus 543 i~~~l~~~~~~--~~~~~~~l~~~v~~ 567 (699)
T TIGR02440 543 ISPILEAELGE--RFKAPAVFDKLLSD 567 (699)
T ss_pred HHHHHHHhcCC--CCCCcHHHHHHHHC
Confidence 66655443 22 12223455566655
No 303
>PLN02240 UDP-glucose 4-epimerase
Probab=55.00 E-value=29 Score=35.98 Aligned_cols=107 Identities=17% Similarity=0.199 Sum_probs=59.2
Q ss_pred CCCCceEEEeCc-ChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEcccCcccCCcccCCch------hchhhhc-ccCC
Q 007802 326 TLADQTFLFLGA-GEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLIVSSRKESLQH------FKKPWAH-EHAP 397 (589)
Q Consensus 326 ~l~d~riv~~GA-GsAg~GiA~ll~~~~~~~~G~s~eeA~~~i~~vD~~GLv~~~r~~~l~~------~k~~fa~-~~~~ 397 (589)
.|+..+|+|.|| |-.|..+++.|.+ .| .+++.+|+..--.......+.. ....+.. +..+
T Consensus 2 ~~~~~~vlItGatG~iG~~l~~~L~~-----~g-------~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~ 69 (352)
T PLN02240 2 SLMGRTILVTGGAGYIGSHTVLQLLL-----AG-------YKVVVIDNLDNSSEEALRRVKELAGDLGDNLVFHKVDLRD 69 (352)
T ss_pred CCCCCEEEEECCCChHHHHHHHHHHH-----CC-------CEEEEEeCCCcchHHHHHHHHHhhcccCccceEEecCcCC
Confidence 467789999997 7788888777754 25 3588887542100000000000 0011111 1112
Q ss_pred CCCHHHHHhccCCcEEEeecCCCCC----------------CCHHHHHHHHcCCCCcEEEecC
Q 007802 398 IKSLLDAVKAIKPTMLMGTSGVGKT----------------FTKEVVEAMASFNEKPVIFALS 444 (589)
Q Consensus 398 ~~~L~e~V~~vkPtvLIG~S~~~g~----------------Fteevv~~Ma~~~erPIIFaLS 444 (589)
..++.++++..+||++|=+.+.... -+..+++.|.+.+-+.+||.=|
T Consensus 70 ~~~l~~~~~~~~~d~vih~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~v~~Ss 132 (352)
T PLN02240 70 KEALEKVFASTRFDAVIHFAGLKAVGESVAKPLLYYDNNLVGTINLLEVMAKHGCKKLVFSSS 132 (352)
T ss_pred HHHHHHHHHhCCCCEEEEccccCCccccccCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEEcc
Confidence 2356777777789999987765321 1335667777665567887533
No 304
>PRK05479 ketol-acid reductoisomerase; Provisional
Probab=54.93 E-value=48 Score=35.89 Aligned_cols=25 Identities=16% Similarity=0.214 Sum_probs=22.3
Q ss_pred CCCCceEEEeCcChHHHHHHHHHHH
Q 007802 326 TLADQTFLFLGAGEAGTGIAELIAL 350 (589)
Q Consensus 326 ~l~d~riv~~GAGsAg~GiA~ll~~ 350 (589)
.|++.+|.|+|.|+.|.++|..|..
T Consensus 14 ~L~gktIgIIG~GsmG~AlA~~L~~ 38 (330)
T PRK05479 14 LIKGKKVAIIGYGSQGHAHALNLRD 38 (330)
T ss_pred hhCCCEEEEEeeHHHHHHHHHHHHH
Confidence 4778999999999999999998865
No 305
>COG5322 Predicted dehydrogenase [General function prediction only]
Probab=54.87 E-value=18 Score=38.62 Aligned_cols=46 Identities=26% Similarity=0.330 Sum_probs=42.0
Q ss_pred CCchHHHHHHHHHHHHHHhCCCCCCceEEEeCc-ChHHHHHHHHHHH
Q 007802 305 IQGTASVVLAGILSALKLVGGTLADQTFLFLGA-GEAGTGIAELIAL 350 (589)
Q Consensus 305 iQGTaaV~lAgll~Alr~~g~~l~d~riv~~GA-GsAg~GiA~ll~~ 350 (589)
--+||-++.-+++.+....|.+|++..+-|+|| |..|.+||+.|..
T Consensus 143 ns~Tayaa~r~Vl~~~~~lGidlsqatvaivGa~G~Ia~~Iar~la~ 189 (351)
T COG5322 143 NSHTAYAACRQVLKHFAQLGIDLSQATVAIVGATGDIASAIARWLAP 189 (351)
T ss_pred CccchHHHHHHHHHHHHHhCcCHHHCeEEEecCCchHHHHHHHHhcc
Confidence 357999999999999999999999999999997 8999999998854
No 306
>KOG1495 consensus Lactate dehydrogenase [Energy production and conversion]
Probab=54.72 E-value=42 Score=35.97 Aligned_cols=131 Identities=18% Similarity=0.313 Sum_probs=77.6
Q ss_pred CCCCCCceEEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEcccC-cccCCcccCCchhchhhhcccC--CCCC
Q 007802 324 GGTLADQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKG-LIVSSRKESLQHFKKPWAHEHA--PIKS 400 (589)
Q Consensus 324 g~~l~d~riv~~GAGsAg~GiA~ll~~~~~~~~G~s~eeA~~~i~~vD~~G-Lv~~~r~~~l~~~k~~fa~~~~--~~~~ 400 (589)
-++.+..||.++|+|..|+.+|-.|+. .|++ +++.++|-+= .+--.+.| |+ |-.+|-+... ..++
T Consensus 15 ~~~~~~~KItVVG~G~VGmAca~siL~-----k~La-----del~lvDv~~dklkGE~MD-Lq-H~s~f~~~~~V~~~~D 82 (332)
T KOG1495|consen 15 EKEFKHNKITVVGVGQVGMACAISILL-----KGLA-----DELVLVDVNEDKLKGEMMD-LQ-HGSAFLSTPNVVASKD 82 (332)
T ss_pred cccccCceEEEEccchHHHHHHHHHHH-----hhhh-----hceEEEecCcchhhhhhhh-hc-cccccccCCceEecCc
Confidence 355678899999999999999988865 2774 6788999652 11112222 32 3345544311 1122
Q ss_pred HHHHHhccCCcEEEeecCCCCC--------------CCHHHHHHHHcCCCCcEEEecCCCCCCCCCCHHHHhccccC---
Q 007802 401 LLDAVKAIKPTMLMGTSGVGKT--------------FTKEVVEAMASFNEKPVIFALSNPTSQSECTAEEAYTWSKG--- 463 (589)
Q Consensus 401 L~e~V~~vkPtvLIG~S~~~g~--------------Fteevv~~Ma~~~erPIIFaLSNPt~~~E~t~eda~~wT~G--- 463 (589)
.. +-. .-++.|=+.+..+- .=+.+|....++.+.-|+.-.|||. |.++|--.
T Consensus 83 y~-~sa--~S~lvIiTAGarq~~gesRL~lvQrNV~ifK~iip~lv~ySpd~~llvvSNPV--------DilTYv~wKLS 151 (332)
T KOG1495|consen 83 YS-VSA--NSKLVIITAGARQSEGESRLDLVQRNVDIFKAIIPALVKYSPDCILLVVSNPV--------DILTYVTWKLS 151 (332)
T ss_pred cc-ccC--CCcEEEEecCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhcCCCeEEEEecCch--------HHHHHHHHHHc
Confidence 21 111 24445544433321 2246778888999999999999998 76665221
Q ss_pred ----cEEEeeCCCCCcce
Q 007802 464 ----QAIFASGSPFDPVE 477 (589)
Q Consensus 464 ----raifAsGSPf~pv~ 477 (589)
.-+|.||.-.+...
T Consensus 152 gfP~nRViGsGcnLDsaR 169 (332)
T KOG1495|consen 152 GFPKNRVIGSGCNLDSAR 169 (332)
T ss_pred CCcccceeccCcCccHHH
Confidence 23556665555443
No 307
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=54.53 E-value=23 Score=30.95 Aligned_cols=90 Identities=11% Similarity=0.134 Sum_probs=52.4
Q ss_pred eEEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEcccCcccCCcccCCchhchhhhcccCCCCCHHHHHhccCC
Q 007802 331 TFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLIVSSRKESLQHFKKPWAHEHAPIKSLLDAVKAIKP 410 (589)
Q Consensus 331 riv~~GAGsAg~GiA~ll~~~~~~~~G~s~eeA~~~i~~vD~~GLv~~~r~~~l~~~k~~fa~~~~~~~~L~e~V~~vkP 410 (589)
||.|+|+|..|.....-+...- .+. +-..++|++. +......+.|-- +..+++.|.++.-++
T Consensus 2 ~v~iiG~G~~g~~~~~~~~~~~---~~~------~v~~v~d~~~-------~~~~~~~~~~~~--~~~~~~~~ll~~~~~ 63 (120)
T PF01408_consen 2 RVGIIGAGSIGRRHLRALLRSS---PDF------EVVAVCDPDP-------ERAEAFAEKYGI--PVYTDLEELLADEDV 63 (120)
T ss_dssp EEEEESTSHHHHHHHHHHHHTT---TTE------EEEEEECSSH-------HHHHHHHHHTTS--EEESSHHHHHHHTTE
T ss_pred EEEEECCcHHHHHHHHHHHhcC---CCc------EEEEEEeCCH-------HHHHHHHHHhcc--cchhHHHHHHHhhcC
Confidence 7999999999776655443320 111 2345666541 112222222221 244789999998889
Q ss_pred cEEEeecCCCCCCCHHHHHHHHcCCCCcEEE
Q 007802 411 TMLMGTSGVGKTFTKEVVEAMASFNEKPVIF 441 (589)
Q Consensus 411 tvLIG~S~~~g~Fteevv~~Ma~~~erPIIF 441 (589)
|+++ +++.+ ....++++...+... +|+.
T Consensus 64 D~V~-I~tp~-~~h~~~~~~~l~~g~-~v~~ 91 (120)
T PF01408_consen 64 DAVI-IATPP-SSHAEIAKKALEAGK-HVLV 91 (120)
T ss_dssp SEEE-EESSG-GGHHHHHHHHHHTTS-EEEE
T ss_pred CEEE-EecCC-cchHHHHHHHHHcCC-EEEE
Confidence 9988 55544 456677766665443 5554
No 308
>PRK01713 ornithine carbamoyltransferase; Provisional
Probab=54.51 E-value=93 Score=33.63 Aligned_cols=137 Identities=17% Similarity=0.279 Sum_probs=81.8
Q ss_pred HHHHHHHHHhcCCceeeEeecCCCccHHHHHHHHcCCCceecc-CCCchHHHHHHHHHHHHHHhCCCCCCceEEEeCcCh
Q 007802 261 QEFMTAVKQNYGEKVLIQFEDFANHNAFELLSKYSSSHLVFND-DIQGTASVVLAGILSALKLVGGTLADQTFLFLGAGE 339 (589)
Q Consensus 261 defv~av~~~fGp~~lIq~EDf~~~~Af~iL~ryr~~~~~FnD-DiQGTaaV~lAgll~Alr~~g~~l~d~riv~~GAGs 339 (589)
.+.+..+.. | .++++ +-.+... +.+.+.+| ..+|+.|- |-.-=-+=+|+=++.-.+..|++|++.||.++|-+.
T Consensus 92 ~DTarvls~-y-~D~iv-~R~~~~~-~~~~~a~~-~~vPVINa~~~~~HPtQaL~Dl~Ti~e~~g~~l~gl~ia~vGD~~ 166 (334)
T PRK01713 92 KDTARVLGR-M-YDAIE-YRGFKQS-IVNELAEY-AGVPVFNGLTDEFHPTQMLADVLTMIENCDKPLSEISYVYIGDAR 166 (334)
T ss_pred HHHHHHHHH-h-CCEEE-EEcCchH-HHHHHHHh-CCCCEEECCCCCCChHHHHHHHHHHHHHcCCCcCCcEEEEECCCc
Confidence 444444443 5 44333 3333322 33333344 46899994 222233456777777777777789999999999875
Q ss_pred HHHHHHHHHHHHHHhccCCCHHhhcCeEEEEcccCcccCCcccCCchhchhhhcc-cC---CCCCHHHHHhccCCcEEEe
Q 007802 340 AGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLIVSSRKESLQHFKKPWAHE-HA---PIKSLLDAVKAIKPTMLMG 415 (589)
Q Consensus 340 Ag~GiA~ll~~~~~~~~G~s~eeA~~~i~~vD~~GLv~~~r~~~l~~~k~~fa~~-~~---~~~~L~e~V~~vkPtvLIG 415 (589)
- ++++-++.++.+ .|+ +|.++-.+++.-.+ .+-+.-+.+++. .. ...++.++++. .||+.-
T Consensus 167 ~--~v~~Sl~~~~~~-~g~-------~v~~~~P~~~~p~~---~~~~~~~~~~~~~g~~~~~~~d~~~a~~~--aDvVyt 231 (334)
T PRK01713 167 N--NMGNSLLLIGAK-LGM-------DVRICAPKALLPEA---SLVEMCEKFAKESGARITVTDDIDKAVKG--VDFVHT 231 (334)
T ss_pred c--CHHHHHHHHHHH-cCC-------EEEEECCchhcCCH---HHHHHHHHHHHHcCCeEEEEcCHHHHhCC--CCEEEE
Confidence 3 378877676665 475 58888888773321 111222334432 11 13689999997 999987
Q ss_pred ec
Q 007802 416 TS 417 (589)
Q Consensus 416 ~S 417 (589)
.+
T Consensus 232 ~~ 233 (334)
T PRK01713 232 DV 233 (334)
T ss_pred cc
Confidence 53
No 309
>PRK06928 pyrroline-5-carboxylate reductase; Reviewed
Probab=54.48 E-value=54 Score=33.90 Aligned_cols=98 Identities=11% Similarity=0.101 Sum_probs=51.6
Q ss_pred ceEEEeCcChHHHHHHHHHHHHHHhccC-CCHHhhcCeEEEEcccCcccCCcccCCchhchhhhcccCCCCCHHHHHhcc
Q 007802 330 QTFLFLGAGEAGTGIAELIALEMSKQTK-APIEEARKKIWLVDSKGLIVSSRKESLQHFKKPWAHEHAPIKSLLDAVKAI 408 (589)
Q Consensus 330 ~riv~~GAGsAg~GiA~ll~~~~~~~~G-~s~eeA~~~i~~vD~~GLv~~~r~~~l~~~k~~fa~~~~~~~~L~e~V~~v 408 (589)
+||.|+|+|..|..+|..+... | ++ ..+++++|++- . +.+......+. ......+..|+++.
T Consensus 2 ~~I~iIG~G~mG~ala~~L~~~-----g~~~----~~~V~~~~r~~---~---~~~~~l~~~~~-~~~~~~~~~e~~~~- 64 (277)
T PRK06928 2 EKIGFIGYGSMADMIATKLLET-----EVAT----PEEIILYSSSK---N---EHFNQLYDKYP-TVELADNEAEIFTK- 64 (277)
T ss_pred CEEEEECccHHHHHHHHHHHHC-----CCCC----cccEEEEeCCc---H---HHHHHHHHHcC-CeEEeCCHHHHHhh-
Confidence 4799999999999999988653 4 21 24677777631 0 00111111110 00012456666653
Q ss_pred CCcEEEeecCCCCCCCHHHHHHHHcC-CCCcEEEecCCCC
Q 007802 409 KPTMLMGTSGVGKTFTKEVVEAMASF-NEKPVIFALSNPT 447 (589)
Q Consensus 409 kPtvLIG~S~~~g~Fteevv~~Ma~~-~erPIIFaLSNPt 447 (589)
+|++| ++..+ ...+++++.+..+ .+..+|..++|-.
T Consensus 65 -aDvVi-lavpp-~~~~~vl~~l~~~l~~~~~ivS~~aGi 101 (277)
T PRK06928 65 -CDHSF-ICVPP-LAVLPLLKDCAPVLTPDRHVVSIAAGV 101 (277)
T ss_pred -CCEEE-EecCH-HHHHHHHHHHHhhcCCCCEEEEECCCC
Confidence 66666 44433 3455666666432 2233555566654
No 310
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=54.32 E-value=19 Score=39.83 Aligned_cols=28 Identities=14% Similarity=0.152 Sum_probs=23.7
Q ss_pred hCCCCCCceEEEeCcChHHHHHHHHHHH
Q 007802 323 VGGTLADQTFLFLGAGEAGTGIAELIAL 350 (589)
Q Consensus 323 ~g~~l~d~riv~~GAGsAg~GiA~ll~~ 350 (589)
.+..++.++++|+|+|.+|+.+|+.|.+
T Consensus 10 ~~~~~~~~~v~viG~G~~G~~~A~~L~~ 37 (480)
T PRK01438 10 WHSDWQGLRVVVAGLGVSGFAAADALLE 37 (480)
T ss_pred cccCcCCCEEEEECCCHHHHHHHHHHHH
Confidence 4556788899999999999999988754
No 311
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=54.28 E-value=24 Score=40.12 Aligned_cols=36 Identities=14% Similarity=0.192 Sum_probs=28.1
Q ss_pred CCCCceEEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEccc
Q 007802 326 TLADQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSK 373 (589)
Q Consensus 326 ~l~d~riv~~GAGsAg~GiA~ll~~~~~~~~G~s~eeA~~~i~~vD~~ 373 (589)
.-.+.+|+|+|||.||+..|..+.. .|. ++.++|+.
T Consensus 134 ~~~g~~V~VIGaGpaGL~aA~~l~~-----~G~-------~V~v~e~~ 169 (564)
T PRK12771 134 PDTGKRVAVIGGGPAGLSAAYHLRR-----MGH-------AVTIFEAG 169 (564)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHH-----CCC-------eEEEEecC
Confidence 3467899999999999999987754 363 48888864
No 312
>PRK12829 short chain dehydrogenase; Provisional
Probab=54.20 E-value=47 Score=32.55 Aligned_cols=37 Identities=24% Similarity=0.390 Sum_probs=23.4
Q ss_pred CCCCceEEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEccc
Q 007802 326 TLADQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSK 373 (589)
Q Consensus 326 ~l~d~riv~~GAGsAg~GiA~ll~~~~~~~~G~s~eeA~~~i~~vD~~ 373 (589)
.+++.+++|.||.. ||...++..+.+ .|. ++++++++
T Consensus 8 ~~~~~~vlItGa~g---~iG~~~a~~L~~-~g~-------~V~~~~r~ 44 (264)
T PRK12829 8 PLDGLRVLVTGGAS---GIGRAIAEAFAE-AGA-------RVHVCDVS 44 (264)
T ss_pred ccCCCEEEEeCCCC---cHHHHHHHHHHH-CCC-------EEEEEeCC
Confidence 37889999999842 344444444443 363 58888764
No 313
>PRK07233 hypothetical protein; Provisional
Probab=54.01 E-value=14 Score=39.27 Aligned_cols=31 Identities=19% Similarity=0.303 Sum_probs=25.3
Q ss_pred eEEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEccc
Q 007802 331 TFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSK 373 (589)
Q Consensus 331 riv~~GAGsAg~GiA~ll~~~~~~~~G~s~eeA~~~i~~vD~~ 373 (589)
||+|+|||-||+..|..|.+ .| .++.+++++
T Consensus 1 ~vvVIGaGiaGL~aA~~L~~-----~G-------~~v~vlE~~ 31 (434)
T PRK07233 1 KIAIVGGGIAGLAAAYRLAK-----RG-------HEVTVFEAD 31 (434)
T ss_pred CEEEECCCHHHHHHHHHHHH-----CC-------CcEEEEEeC
Confidence 68999999999999988865 26 368888877
No 314
>PRK07236 hypothetical protein; Provisional
Probab=53.58 E-value=19 Score=38.37 Aligned_cols=24 Identities=17% Similarity=0.198 Sum_probs=21.2
Q ss_pred CCCceEEEeCcChHHHHHHHHHHH
Q 007802 327 LADQTFLFLGAGEAGTGIAELIAL 350 (589)
Q Consensus 327 l~d~riv~~GAGsAg~GiA~ll~~ 350 (589)
.+..+|+|+|||.||+..|..|.+
T Consensus 4 ~~~~~ViIVGaG~aGl~~A~~L~~ 27 (386)
T PRK07236 4 MSGPRAVVIGGSLGGLFAALLLRR 27 (386)
T ss_pred CCCCeEEEECCCHHHHHHHHHHHh
Confidence 456899999999999999998866
No 315
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=53.52 E-value=19 Score=39.80 Aligned_cols=36 Identities=19% Similarity=0.288 Sum_probs=29.0
Q ss_pred CCCCceEEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEccc
Q 007802 326 TLADQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSK 373 (589)
Q Consensus 326 ~l~d~riv~~GAGsAg~GiA~ll~~~~~~~~G~s~eeA~~~i~~vD~~ 373 (589)
+.+..+|+|+|+|.||+..|..+.. .| .++.++|+.
T Consensus 130 ~~~~~~V~IIG~G~aGl~aA~~l~~-----~G-------~~V~vie~~ 165 (449)
T TIGR01316 130 PSTHKKVAVIGAGPAGLACASELAK-----AG-------HSVTVFEAL 165 (449)
T ss_pred CCCCCEEEEECcCHHHHHHHHHHHH-----CC-------CcEEEEecC
Confidence 4567899999999999999998854 25 368888874
No 316
>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1.1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....
Probab=53.21 E-value=19 Score=36.42 Aligned_cols=33 Identities=24% Similarity=0.356 Sum_probs=27.6
Q ss_pred eEEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEcccCc
Q 007802 331 TFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGL 375 (589)
Q Consensus 331 riv~~GAGsAg~GiA~ll~~~~~~~~G~s~eeA~~~i~~vD~~GL 375 (589)
.|+|+|||-+|+.+|-.|.+ .| .++.++|+..+
T Consensus 1 DvvIIGaGi~G~~~A~~La~-----~G-------~~V~l~e~~~~ 33 (358)
T PF01266_consen 1 DVVIIGAGIAGLSTAYELAR-----RG-------HSVTLLERGDI 33 (358)
T ss_dssp EEEEECTSHHHHHHHHHHHH-----TT-------SEEEEEESSST
T ss_pred CEEEECcCHHHHHHHHHHHH-----CC-------CeEEEEeeccc
Confidence 38999999999999998876 36 47999999833
No 317
>cd01979 Pchlide_reductase_N Pchlide_reductase_N: N protein of the NB protein complex of Protochlorophyllide (Pchlide)_reductase. Pchlide reductase catalyzes the reductive formation of chlorophyllide (chlide) from protochlorophyllide (pchlide) during biosynthesis of chlorophylls and bacteriochlorophylls. This group contains both the light-independent Pchlide reductase (DPOR) and light-dependent Pchlide reductase (LPOR). Angiosperms contain only LPOR, cyanobacteria, algae and gymnosperms contain both DPOR and LPOR, primitive anoxygenic photosynthetic bacteria contain only DPOR. NB is structurally similar to the FeMo protein of nitrogenase, forming an N2B2 heterotetramer. N and B are homologous to the FeMo alpha and beta subunits respectively. Also in common with nitrogenase in vitro DPOR activity requires ATP hydrolysis and dithoionite or ferredoxin as electron donor. The NB protein complex may serve as a catalytic site for Pchlide reduction similar to MoFe for nitrogen reduction.
Probab=53.07 E-value=32 Score=37.49 Aligned_cols=35 Identities=17% Similarity=0.237 Sum_probs=27.8
Q ss_pred HHHHHHHhCCCCCCceEEEeCcChHHHHHHHHHHH
Q 007802 316 ILSALKLVGGTLADQTFLFLGAGEAGTGIAELIAL 350 (589)
Q Consensus 316 ll~Alr~~g~~l~d~riv~~GAGsAg~GiA~ll~~ 350 (589)
+.-++......|++.|++|+|-+.-..++++.+.+
T Consensus 263 ~~~~l~~~~~~l~Gkrv~i~g~~~~~~~la~~L~e 297 (396)
T cd01979 263 AWRALEPYLDLLRGKSIFFMGDNLLEIPLARFLTR 297 (396)
T ss_pred HHHHHHHHHHhhcCCEEEEECCchHHHHHHHHHHH
Confidence 34455556667788999999999989999998876
No 318
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=52.88 E-value=18 Score=37.78 Aligned_cols=32 Identities=31% Similarity=0.517 Sum_probs=25.2
Q ss_pred ceEEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEccc
Q 007802 330 QTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSK 373 (589)
Q Consensus 330 ~riv~~GAGsAg~GiA~ll~~~~~~~~G~s~eeA~~~i~~vD~~ 373 (589)
.||.|+|||..|.|||.+++.+ |. +++++|..
T Consensus 6 ~~V~ViGaG~mG~~iA~~~a~~-----G~-------~V~l~d~~ 37 (286)
T PRK07819 6 QRVGVVGAGQMGAGIAEVCARA-----GV-------DVLVFETT 37 (286)
T ss_pred cEEEEEcccHHHHHHHHHHHhC-----CC-------EEEEEECC
Confidence 3899999999999999988653 63 46676653
No 319
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=52.81 E-value=17 Score=42.11 Aligned_cols=35 Identities=26% Similarity=0.423 Sum_probs=28.3
Q ss_pred CCCceEEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEccc
Q 007802 327 LADQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSK 373 (589)
Q Consensus 327 l~d~riv~~GAGsAg~GiA~ll~~~~~~~~G~s~eeA~~~i~~vD~~ 373 (589)
-++.+|+|+|+|.||+..|..|.. .|. ++.++|+.
T Consensus 325 ~~~~~VaIIGaGpAGLsaA~~L~~-----~G~-------~V~V~E~~ 359 (654)
T PRK12769 325 KSDKRVAIIGAGPAGLACADVLAR-----NGV-------AVTVYDRH 359 (654)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHH-----CCC-------eEEEEecC
Confidence 357899999999999999988865 263 47888875
No 320
>PRK06847 hypothetical protein; Provisional
Probab=52.76 E-value=18 Score=37.90 Aligned_cols=22 Identities=23% Similarity=0.312 Sum_probs=19.2
Q ss_pred CceEEEeCcChHHHHHHHHHHH
Q 007802 329 DQTFLFLGAGEAGTGIAELIAL 350 (589)
Q Consensus 329 d~riv~~GAGsAg~GiA~ll~~ 350 (589)
..+|+|+|||.||+..|..|..
T Consensus 4 ~~~V~IVGaG~aGl~~A~~L~~ 25 (375)
T PRK06847 4 VKKVLIVGGGIGGLSAAIALRR 25 (375)
T ss_pred cceEEEECCCHHHHHHHHHHHh
Confidence 4589999999999999998754
No 321
>PRK06184 hypothetical protein; Provisional
Probab=52.71 E-value=17 Score=40.30 Aligned_cols=35 Identities=23% Similarity=0.347 Sum_probs=27.6
Q ss_pred CCceEEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEcccC
Q 007802 328 ADQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKG 374 (589)
Q Consensus 328 ~d~riv~~GAGsAg~GiA~ll~~~~~~~~G~s~eeA~~~i~~vD~~G 374 (589)
++..|+|+|||.+|+..|-+|.+ .|+ ++.++|+.-
T Consensus 2 ~~~dVlIVGaGpaGl~~A~~La~-----~Gi-------~v~viE~~~ 36 (502)
T PRK06184 2 TTTDVLIVGAGPTGLTLAIELAR-----RGV-------SFRLIEKAP 36 (502)
T ss_pred CCCcEEEECCCHHHHHHHHHHHH-----CCC-------cEEEEeCCC
Confidence 45789999999999999988765 375 477788753
No 322
>KOG2018 consensus Predicted dinucleotide-utilizing enzyme involved in molybdopterin and thiamine biosynthesis [Posttranslational modification, protein turnover, chaperones]
Probab=52.51 E-value=17 Score=39.61 Aligned_cols=40 Identities=25% Similarity=0.430 Sum_probs=33.6
Q ss_pred CCCCCceEEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEcccCc
Q 007802 325 GTLADQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGL 375 (589)
Q Consensus 325 ~~l~d~riv~~GAGsAg~GiA~ll~~~~~~~~G~s~eeA~~~i~~vD~~GL 375 (589)
.+|++|=||++|||..|.-++++|+.. |+ ++|-+||-+-.
T Consensus 70 ~kl~~syVVVVG~GgVGSwv~nmL~RS-----G~------qKi~iVDfdqV 109 (430)
T KOG2018|consen 70 EKLTNSYVVVVGAGGVGSWVANMLLRS-----GV------QKIRIVDFDQV 109 (430)
T ss_pred HHhcCcEEEEEecCchhHHHHHHHHHh-----cC------ceEEEechhhc
Confidence 468899999999999999999999874 76 67888887643
No 323
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=51.88 E-value=14 Score=39.22 Aligned_cols=36 Identities=19% Similarity=0.265 Sum_probs=27.0
Q ss_pred ceEEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEcccCc
Q 007802 330 QTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGL 375 (589)
Q Consensus 330 ~riv~~GAGsAg~GiA~ll~~~~~~~~G~s~eeA~~~i~~vD~~GL 375 (589)
.+|||+|+|.||+..|+.|... + ..-+|.+++++.-
T Consensus 3 ~~vvIiG~G~AG~~~a~~lr~~-----~-----~~~~Itvi~~~~~ 38 (377)
T PRK04965 3 NGIVIIGSGFAARQLVKNIRKQ-----D-----AHIPITLITADSG 38 (377)
T ss_pred CCEEEECCcHHHHHHHHHHHhh-----C-----cCCCEEEEeCCCC
Confidence 4899999999999999988542 1 1246888877543
No 324
>PTZ00245 ubiquitin activating enzyme; Provisional
Probab=51.50 E-value=15 Score=39.01 Aligned_cols=73 Identities=12% Similarity=0.170 Sum_probs=49.8
Q ss_pred CCCCCceEEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEcccCcccCCcccCCchhchhhhcccCCC----CC
Q 007802 325 GTLADQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLIVSSRKESLQHFKKPWAHEHAPI----KS 400 (589)
Q Consensus 325 ~~l~d~riv~~GAGsAg~GiA~ll~~~~~~~~G~s~eeA~~~i~~vD~~GLv~~~r~~~l~~~k~~fa~~~~~~----~~ 400 (589)
++|+.-+|+++|+|.-|.-+|+-|+.+ |+ ++|.++|.+-. ..+ +|. ..|-.+.+.. ..
T Consensus 22 ~KL~~SrVLVVG~GGLGsEVAKnLaLA-----GV------GsItIvDdD~V-e~S---NL~---RQfl~~~dvGk~KAea 83 (287)
T PTZ00245 22 QQLMHTSVALHGVAGAAAEAAKNLVLA-----GV------RAVAVADEGLV-TDA---DVC---TNYLMQGEAGGTRGAR 83 (287)
T ss_pred HHHhhCeEEEECCCchHHHHHHHHHHc-----CC------CeEEEecCCcc-chh---hhc---cccccccccCCcHHHH
Confidence 578899999999999999999998775 76 78999998732 211 132 2222221111 24
Q ss_pred HHHHHhccCCcEEEe
Q 007802 401 LLDAVKAIKPTMLMG 415 (589)
Q Consensus 401 L~e~V~~vkPtvLIG 415 (589)
..+-++.+.|++-|=
T Consensus 84 Aa~~L~eLNP~V~V~ 98 (287)
T PTZ00245 84 ALGALQRLNPHVSVY 98 (287)
T ss_pred HHHHHHHHCCCcEEE
Confidence 666777788888874
No 325
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=51.47 E-value=15 Score=39.73 Aligned_cols=37 Identities=14% Similarity=0.225 Sum_probs=28.1
Q ss_pred ceEEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEcccCcc
Q 007802 330 QTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLI 376 (589)
Q Consensus 330 ~riv~~GAGsAg~GiA~ll~~~~~~~~G~s~eeA~~~i~~vD~~GLv 376 (589)
.||||+|+|.||+..|..|.+. |- .-+|.++|++.-+
T Consensus 1 ~~vvIIGgG~aGl~aA~~l~~~-----~~-----~~~Vtli~~~~~~ 37 (444)
T PRK09564 1 MKIIIIGGTAAGMSAAAKAKRL-----NK-----ELEITVYEKTDIV 37 (444)
T ss_pred CeEEEECCcHHHHHHHHHHHHH-----CC-----CCcEEEEECCCcc
Confidence 3899999999999999987542 21 1379999987543
No 326
>PRK06046 alanine dehydrogenase; Validated
Probab=51.44 E-value=1.1e+02 Score=32.69 Aligned_cols=103 Identities=15% Similarity=0.154 Sum_probs=63.8
Q ss_pred CCceEEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEcccCcccCCcccCCchhchhhhcc----cCCCCCHHH
Q 007802 328 ADQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLIVSSRKESLQHFKKPWAHE----HAPIKSLLD 403 (589)
Q Consensus 328 ~d~riv~~GAGsAg~GiA~ll~~~~~~~~G~s~eeA~~~i~~vD~~GLv~~~r~~~l~~~k~~fa~~----~~~~~~L~e 403 (589)
.-.++.|+|+|..|...++.+... .++ ++++++|++- ++ .......+.+. .....++.|
T Consensus 128 ~~~~vgiiG~G~qa~~h~~al~~~----~~i------~~v~v~~r~~----~~---~~~~~~~~~~~~~~~v~~~~~~~~ 190 (326)
T PRK06046 128 DSKVVGIIGAGNQARTQLLALSEV----FDL------EEVRVYDRTK----SS---AEKFVERMSSVVGCDVTVAEDIEE 190 (326)
T ss_pred CCCEEEEECCcHHHHHHHHHHHhh----CCc------eEEEEECCCH----HH---HHHHHHHHHhhcCceEEEeCCHHH
Confidence 357999999999988777666432 233 7899888861 11 22223233211 111357888
Q ss_pred HHhccCCcEEEeecC-CCCCCCHHHHHHHHcCCCCcEEEecC-CCCCCCCCCHHH
Q 007802 404 AVKAIKPTMLMGTSG-VGKTFTKEVVEAMASFNEKPVIFALS-NPTSQSECTAEE 456 (589)
Q Consensus 404 ~V~~vkPtvLIG~S~-~~g~Fteevv~~Ma~~~erPIIFaLS-NPt~~~E~t~ed 456 (589)
+++ .|+++-++. ...+|..+.++ +.-.|-++. +-..+.|+.++-
T Consensus 191 ~l~---aDiVv~aTps~~P~~~~~~l~------~g~hV~~iGs~~p~~~El~~~~ 236 (326)
T PRK06046 191 ACD---CDILVTTTPSRKPVVKAEWIK------EGTHINAIGADAPGKQELDPEI 236 (326)
T ss_pred Hhh---CCEEEEecCCCCcEecHHHcC------CCCEEEecCCCCCccccCCHHH
Confidence 885 798887653 23477777775 333466664 444689999874
No 327
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=51.44 E-value=21 Score=39.66 Aligned_cols=35 Identities=20% Similarity=0.340 Sum_probs=28.1
Q ss_pred CCCceEEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEccc
Q 007802 327 LADQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSK 373 (589)
Q Consensus 327 l~d~riv~~GAGsAg~GiA~ll~~~~~~~~G~s~eeA~~~i~~vD~~ 373 (589)
-.+.+|+|+|+|.||+..|..+.. .| .++.++|+.
T Consensus 141 ~~~~~VvIIGaGpAGl~aA~~l~~-----~G-------~~V~vie~~ 175 (471)
T PRK12810 141 RTGKKVAVVGSGPAGLAAADQLAR-----AG-------HKVTVFERA 175 (471)
T ss_pred CCCCEEEEECcCHHHHHHHHHHHh-----CC-------CcEEEEecC
Confidence 356799999999999999988754 25 358889875
No 328
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=51.43 E-value=20 Score=43.81 Aligned_cols=40 Identities=20% Similarity=0.281 Sum_probs=31.8
Q ss_pred CCCceEEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEccc----CcccC
Q 007802 327 LADQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSK----GLIVS 378 (589)
Q Consensus 327 l~d~riv~~GAGsAg~GiA~ll~~~~~~~~G~s~eeA~~~i~~vD~~----GLv~~ 378 (589)
-++.||+|+|+|.||+..|..|... |. ++.++|+. |++.-
T Consensus 304 ~~gkkVaVIGsGPAGLsaA~~Lar~-----G~-------~VtVfE~~~~~GG~l~y 347 (944)
T PRK12779 304 AVKPPIAVVGSGPSGLINAYLLAVE-----GF-------PVTVFEAFHDLGGVLRY 347 (944)
T ss_pred CCCCeEEEECCCHHHHHHHHHHHHC-----CC-------eEEEEeeCCCCCceEEc
Confidence 4689999999999999999988752 64 58888875 66543
No 329
>cd01968 Nitrogenase_NifE_I Nitrogenase_NifE_I: a subgroup of the NifE subunit of the NifEN complex: NifE forms an alpha2beta2 tetramer with NifN. NifE and NifN are structurally homologous to nitrogenase MoFe protein alpha and beta subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The NifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this NifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco).
Probab=51.00 E-value=24 Score=38.57 Aligned_cols=86 Identities=12% Similarity=0.122 Sum_probs=47.4
Q ss_pred HHHHHHhCCCCCCceEEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEcccCcccCCcccCCchhchhhhcc--
Q 007802 317 LSALKLVGGTLADQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLIVSSRKESLQHFKKPWAHE-- 394 (589)
Q Consensus 317 l~Alr~~g~~l~d~riv~~GAGsAg~GiA~ll~~~~~~~~G~s~eeA~~~i~~vD~~GLv~~~r~~~l~~~k~~fa~~-- 394 (589)
..++.-....|.+.|++|+|.+.-..++++++.+ .|+. +..+-+. .... ++....+..+...
T Consensus 275 ~~~l~~~~~~l~gkrv~i~~~~~~~~~la~~l~e-----lGm~-------v~~~~~~---~~~~-~~~~~~~~~~~~~~~ 338 (410)
T cd01968 275 RPELAPYRARLEGKKAALYTGGVKSWSLVSALQD-----LGME-------VVATGTQ---KGTK-EDYERIKELLGEGTV 338 (410)
T ss_pred HHHHHHHHHHhCCCEEEEEcCCchHHHHHHHHHH-----CCCE-------EEEEecc---cCCH-HHHHHHHHHhCCCcE
Confidence 3344444556789999999988888999987643 4873 2222111 1111 0011111111000
Q ss_pred ---cCCCCCHHHHHhccCCcEEEeecC
Q 007802 395 ---HAPIKSLLDAVKAIKPTMLMGTSG 418 (589)
Q Consensus 395 ---~~~~~~L~e~V~~vkPtvLIG~S~ 418 (589)
..+...+.+.++..+||++||-|.
T Consensus 339 v~~~~~~~e~~~~i~~~~pDl~ig~s~ 365 (410)
T cd01968 339 IVDDANPRELKKLLKEKKADLLVAGGK 365 (410)
T ss_pred EEeCCCHHHHHHHHhhcCCCEEEECCc
Confidence 111123668889999999999754
No 330
>PRK12570 N-acetylmuramic acid-6-phosphate etherase; Reviewed
Probab=50.94 E-value=59 Score=34.47 Aligned_cols=37 Identities=22% Similarity=0.327 Sum_probs=25.7
Q ss_pred CCcEEEeecCCCCCCCHHHHHHHHcCCCC--cEEEecCCCC
Q 007802 409 KPTMLMGTSGVGKTFTKEVVEAMASFNEK--PVIFALSNPT 447 (589)
Q Consensus 409 kPtvLIG~S~~~g~Fteevv~~Ma~~~er--PIIFaLSNPt 447 (589)
+-|++||+|..|. |++++..+....++ |+|.=-+||.
T Consensus 127 ~~DvvI~IS~SG~--T~~vi~al~~Ak~~Ga~~IaIT~~~~ 165 (296)
T PRK12570 127 ADDVVVGIAASGR--TPYVIGALEYAKQIGATTIALSCNPD 165 (296)
T ss_pred CCCEEEEEeCCCC--CHHHHHHHHHHHHCCCeEEEEECCCC
Confidence 5699999999775 88888887644443 5544334555
No 331
>PRK05993 short chain dehydrogenase; Provisional
Probab=50.86 E-value=37 Score=34.24 Aligned_cols=33 Identities=15% Similarity=0.243 Sum_probs=20.6
Q ss_pred CceEEEeCc-ChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEccc
Q 007802 329 DQTFLFLGA-GEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSK 373 (589)
Q Consensus 329 d~riv~~GA-GsAg~GiA~ll~~~~~~~~G~s~eeA~~~i~~vD~~ 373 (589)
..++||.|| |..|..+|+.+. + .| -++++++++
T Consensus 4 ~k~vlItGasggiG~~la~~l~----~-~G-------~~Vi~~~r~ 37 (277)
T PRK05993 4 KRSILITGCSSGIGAYCARALQ----S-DG-------WRVFATCRK 37 (277)
T ss_pred CCEEEEeCCCcHHHHHHHHHHH----H-CC-------CEEEEEECC
Confidence 357899998 445555555543 3 36 358888765
No 332
>PRK08163 salicylate hydroxylase; Provisional
Probab=50.85 E-value=19 Score=38.07 Aligned_cols=22 Identities=27% Similarity=0.335 Sum_probs=19.1
Q ss_pred CceEEEeCcChHHHHHHHHHHH
Q 007802 329 DQTFLFLGAGEAGTGIAELIAL 350 (589)
Q Consensus 329 d~riv~~GAGsAg~GiA~ll~~ 350 (589)
..+|+|+|||.||+..|-.|..
T Consensus 4 ~~~V~IvGaGiaGl~~A~~L~~ 25 (396)
T PRK08163 4 VTPVLIVGGGIGGLAAALALAR 25 (396)
T ss_pred CCeEEEECCcHHHHHHHHHHHh
Confidence 4689999999999999987754
No 333
>COG1086 Predicted nucleoside-diphosphate sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]
Probab=50.80 E-value=1.7e+02 Score=34.28 Aligned_cols=124 Identities=14% Similarity=0.226 Sum_probs=67.8
Q ss_pred CCCCCceEEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEcccCcccCCcccCCchhchhhhcccCCCCCHHHH
Q 007802 325 GTLADQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLIVSSRKESLQHFKKPWAHEHAPIKSLLDA 404 (589)
Q Consensus 325 ~~l~d~riv~~GAGsAg~GiA~ll~~~~~~~~G~s~eeA~~~i~~vD~~GLv~~~r~~~l~~~k~~fa~~~~~~~~L~e~ 404 (589)
++....|++|+|||+||.-++ ++|.+. + + .+-+-++|.+.=.+..+-..++- | .... +.++
T Consensus 112 ~~~~~~r~lIiGAG~ag~~l~----r~~~~~-~----~-~~pV~fiDdd~~~~g~~i~Gv~V----~----g~~~-i~~~ 172 (588)
T COG1086 112 QKDNRIRLLIIGAGSAGDLLL----RALRRD-P----E-YTPVAFLDDDPDLTGMKIRGVPV----L----GRIE-IERV 172 (588)
T ss_pred cccCCCceEEEcCchHHHHHH----HHHHhC-C----C-cceEEEECCChhhcCCEEeceee----e----chhH-HHHH
Confidence 556668999999999985554 444431 1 1 56677888765333221111111 1 1223 7788
Q ss_pred HhccCCcEEEeecCCCCCCCHHHHHHHHcCCCCcEEEe-c--------CCCCCCCCCCHHHHh-------------cccc
Q 007802 405 VKAIKPTMLMGTSGVGKTFTKEVVEAMASFNEKPVIFA-L--------SNPTSQSECTAEEAY-------------TWSK 462 (589)
Q Consensus 405 V~~vkPtvLIG~S~~~g~Fteevv~~Ma~~~erPIIFa-L--------SNPt~~~E~t~eda~-------------~wT~ 462 (589)
|+..+.+-+| + +.|.+..++.-+-..+.+..|+.+- | .+. ..-|+..||.+ ++=.
T Consensus 173 v~~~~~~~ii-i-Aips~~~~~~~~i~~~l~~~~~~v~~lP~~~~l~~~~~-~lreI~ieDLLgR~pV~~d~~~i~~~~~ 249 (588)
T COG1086 173 VEELGIQLIL-I-AIPSASQEERRRILLRLARTGIAVRILPQLTDLKDLNG-QLREIEIEDLLGRPPVALDTELIGAMLT 249 (588)
T ss_pred HHHcCCceEE-E-ecCCCCHHHHHHHHHHHHhcCCcEEecCcHHHHHHhcc-ccccCCHHHHhCCCCCCCCHHHHHhHcC
Confidence 8887777322 2 2244555554444444456664332 2 122 25666666654 4557
Q ss_pred CcEEEeeC
Q 007802 463 GQAIFASG 470 (589)
Q Consensus 463 GraifAsG 470 (589)
||-|..||
T Consensus 250 gK~vLVTG 257 (588)
T COG1086 250 GKTVLVTG 257 (588)
T ss_pred CCEEEEeC
Confidence 88877766
No 334
>PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase. Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A.
Probab=50.71 E-value=8.1 Score=41.38 Aligned_cols=91 Identities=21% Similarity=0.265 Sum_probs=51.2
Q ss_pred EEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEcccCcccCCcccCCc----hhchhhhc-ccCCCCCHHHHHh
Q 007802 332 FLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLIVSSRKESLQ----HFKKPWAH-EHAPIKSLLDAVK 406 (589)
Q Consensus 332 iv~~GAGsAg~GiA~ll~~~~~~~~G~s~eeA~~~i~~vD~~GLv~~~r~~~l~----~~k~~fa~-~~~~~~~L~e~V~ 406 (589)
|+|+|+|..|-.+++.|.+. ... .++.+.|++ .++.+.+. ..+-.+.+ +..+..+|.+.++
T Consensus 1 IlvlG~G~vG~~~~~~L~~~----~~~------~~v~va~r~----~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~ 66 (386)
T PF03435_consen 1 ILVLGAGRVGSAIARLLARR----GPF------EEVTVADRN----PEKAERLAEKLLGDRVEAVQVDVNDPESLAELLR 66 (386)
T ss_dssp EEEE--SHHHHHHHHHHHCT----TCE-------EEEEEESS----HHHHHHHHT--TTTTEEEEE--TTTHHHHHHHHT
T ss_pred CEEEcCcHHHHHHHHHHhcC----CCC------CcEEEEECC----HHHHHHHHhhccccceeEEEEecCCHHHHHHHHh
Confidence 78999999999999988653 111 278888885 11100011 01111111 1122235888888
Q ss_pred ccCCcEEEeecCCCCCCCHHHHHHHHcCCCCcEEE
Q 007802 407 AIKPTMLMGTSGVGKTFTKEVVEAMASFNEKPVIF 441 (589)
Q Consensus 407 ~vkPtvLIG~S~~~g~Fteevv~~Ma~~~erPIIF 441 (589)
. .|++|-+++.. +...++++-.+. ..+.|=
T Consensus 67 ~--~dvVin~~gp~--~~~~v~~~~i~~-g~~yvD 96 (386)
T PF03435_consen 67 G--CDVVINCAGPF--FGEPVARACIEA-GVHYVD 96 (386)
T ss_dssp T--SSEEEE-SSGG--GHHHHHHHHHHH-T-EEEE
T ss_pred c--CCEEEECCccc--hhHHHHHHHHHh-CCCeec
Confidence 7 69999988754 788888876543 345554
No 335
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=50.46 E-value=62 Score=35.32 Aligned_cols=31 Identities=26% Similarity=0.283 Sum_probs=25.2
Q ss_pred eEEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEccc
Q 007802 331 TFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSK 373 (589)
Q Consensus 331 riv~~GAGsAg~GiA~ll~~~~~~~~G~s~eeA~~~i~~vD~~ 373 (589)
||.|+|+|..|..+|..+... | .+++.+|++
T Consensus 2 kI~vIGlG~~G~~lA~~La~~-----G-------~~V~~~d~~ 32 (411)
T TIGR03026 2 KIAVIGLGYVGLPLAALLADL-----G-------HEVTGVDID 32 (411)
T ss_pred EEEEECCCchhHHHHHHHHhc-----C-------CeEEEEECC
Confidence 689999999999999988653 5 357888874
No 336
>TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase. This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism.
Probab=50.35 E-value=61 Score=33.37 Aligned_cols=31 Identities=16% Similarity=0.225 Sum_probs=24.9
Q ss_pred eEEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEccc
Q 007802 331 TFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSK 373 (589)
Q Consensus 331 riv~~GAGsAg~GiA~ll~~~~~~~~G~s~eeA~~~i~~vD~~ 373 (589)
||-|+|.|..|..+|..+... |. +++++|++
T Consensus 1 ~IgvIG~G~mG~~iA~~l~~~-----G~-------~V~~~dr~ 31 (291)
T TIGR01505 1 KVGFIGLGIMGSPMSINLAKA-----GY-------QLHVTTIG 31 (291)
T ss_pred CEEEEEecHHHHHHHHHHHHC-----CC-------eEEEEcCC
Confidence 588999999999999988652 53 57777865
No 337
>PRK07523 gluconate 5-dehydrogenase; Provisional
Probab=50.34 E-value=52 Score=32.42 Aligned_cols=36 Identities=25% Similarity=0.292 Sum_probs=24.2
Q ss_pred CCCCceEEEeCc-ChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEccc
Q 007802 326 TLADQTFLFLGA-GEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSK 373 (589)
Q Consensus 326 ~l~d~riv~~GA-GsAg~GiA~ll~~~~~~~~G~s~eeA~~~i~~vD~~ 373 (589)
++++++++|.|| |..|..+|+.+++ .|. ++.++|++
T Consensus 7 ~~~~k~vlItGa~g~iG~~ia~~l~~-----~G~-------~V~~~~r~ 43 (255)
T PRK07523 7 DLTGRRALVTGSSQGIGYALAEGLAQ-----AGA-------EVILNGRD 43 (255)
T ss_pred CCCCCEEEEECCcchHHHHHHHHHHH-----cCC-------EEEEEeCC
Confidence 578899999997 5555556555543 363 57777764
No 338
>PRK06138 short chain dehydrogenase; Provisional
Probab=50.21 E-value=38 Score=32.94 Aligned_cols=37 Identities=24% Similarity=0.398 Sum_probs=22.8
Q ss_pred CCCCceEEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEccc
Q 007802 326 TLADQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSK 373 (589)
Q Consensus 326 ~l~d~riv~~GAGsAg~GiA~ll~~~~~~~~G~s~eeA~~~i~~vD~~ 373 (589)
.|++.+++|.||.. ||+..|+..+.+ .| .++++++++
T Consensus 2 ~~~~k~~lItG~sg---~iG~~la~~l~~-~G-------~~v~~~~r~ 38 (252)
T PRK06138 2 RLAGRVAIVTGAGS---GIGRATAKLFAR-EG-------ARVVVADRD 38 (252)
T ss_pred CCCCcEEEEeCCCc---hHHHHHHHHHHH-CC-------CeEEEecCC
Confidence 46788999999732 344444444444 35 357877765
No 339
>PRK00683 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=50.09 E-value=76 Score=34.63 Aligned_cols=113 Identities=24% Similarity=0.310 Sum_probs=62.2
Q ss_pred CceEEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEcccCcccCCcccCCchhchhhhcccCCCCCHHHHHhcc
Q 007802 329 DQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLIVSSRKESLQHFKKPWAHEHAPIKSLLDAVKAI 408 (589)
Q Consensus 329 d~riv~~GAGsAg~GiA~ll~~~~~~~~G~s~eeA~~~i~~vD~~GLv~~~r~~~l~~~k~~fa~~~~~~~~L~e~V~~v 408 (589)
.+||+|+|.|-.|..+|+.+.+ .|. +++.+|.+- . .+.. ..+..+. ...+..+..+
T Consensus 3 ~~~i~iiGlG~~G~slA~~l~~-----~G~-------~V~g~D~~~----~---~~~~--~~~~~~~-~~~~~~~~~~-- 58 (418)
T PRK00683 3 LQRVVVLGLGVTGKSIARFLAQ-----KGV-------YVIGVDKSL----E---ALQS--CPYIHER-YLENAEEFPE-- 58 (418)
T ss_pred CCeEEEEEECHHHHHHHHHHHH-----CCC-------EEEEEeCCc----c---ccch--hHHHhhh-hcCCcHHHhc--
Confidence 4689999999999988887654 363 588888651 1 1111 1111110 0012222233
Q ss_pred CCcEEEeecCCCCCCCHHHHHHHHcCCCCcEEEecCCCCCCCCCCHHHHhccccCcEEEeeCCCCCcceeCCeee
Q 007802 409 KPTMLMGTSGVGKTFTKEVVEAMASFNEKPVIFALSNPTSQSECTAEEAYTWSKGQAIFASGSPFDPVEYNGKVF 483 (589)
Q Consensus 409 kPtvLIG~S~~~g~Fteevv~~Ma~~~erPIIFaLSNPt~~~E~t~eda~~wT~GraifAsGSPf~pv~~~G~~~ 483 (589)
+++++|-..+.+ .-.+.+.++..+. -||| |++ |. +-.+..+.+.+.|-.||| +|||-
T Consensus 59 ~~dlvV~s~gi~-~~~~~l~~A~~~g--~~vv---~~~----~~-~~~~~~~~~~~~I~ITGT-------~GKTT 115 (418)
T PRK00683 59 QVDLVVRSPGIK-KEHPWVQAAIASH--IPVV---TDI----QL-AFQTPEFTRYPSLGITGS-------TGKTT 115 (418)
T ss_pred CCCEEEECCCCC-CCcHHHHHHHHCC--CcEE---EHH----HH-HHhhhhcCCCCEEEEECC-------CChHH
Confidence 378888777766 4567777766643 3433 332 11 112222235577888997 67653
No 340
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=49.77 E-value=22 Score=39.71 Aligned_cols=25 Identities=28% Similarity=0.355 Sum_probs=21.3
Q ss_pred CCCCceEEEeCcChHHHHHHHHHHH
Q 007802 326 TLADQTFLFLGAGEAGTGIAELIAL 350 (589)
Q Consensus 326 ~l~d~riv~~GAGsAg~GiA~ll~~ 350 (589)
+....+|+|+|||.||+..|..+.+
T Consensus 7 ~~~~~~VaIIGAG~aGL~aA~~l~~ 31 (461)
T PLN02172 7 PINSQHVAVIGAGAAGLVAARELRR 31 (461)
T ss_pred CCCCCCEEEECCcHHHHHHHHHHHh
Confidence 4456899999999999999988865
No 341
>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]
Probab=49.71 E-value=22 Score=39.54 Aligned_cols=36 Identities=17% Similarity=0.375 Sum_probs=28.5
Q ss_pred CCceEEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEcccC
Q 007802 328 ADQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKG 374 (589)
Q Consensus 328 ~d~riv~~GAGsAg~GiA~ll~~~~~~~~G~s~eeA~~~i~~vD~~G 374 (589)
+.-+++|+|||.+|+++|..|.++ |.+ ++.++|+..
T Consensus 7 ~~~~v~IIGaG~sGlaaa~~L~~~-----g~~------~~~i~Ek~~ 42 (443)
T COG2072 7 THTDVAIIGAGQSGLAAAYALKQA-----GVP------DFVIFEKRD 42 (443)
T ss_pred CcccEEEECCCHHHHHHHHHHHHc-----CCC------cEEEEEccC
Confidence 346899999999999999988764 763 377888774
No 342
>PLN02268 probable polyamine oxidase
Probab=49.63 E-value=5.9 Score=42.76 Aligned_cols=20 Identities=25% Similarity=0.434 Sum_probs=18.5
Q ss_pred eEEEeCcChHHHHHHHHHHH
Q 007802 331 TFLFLGAGEAGTGIAELIAL 350 (589)
Q Consensus 331 riv~~GAGsAg~GiA~ll~~ 350 (589)
+|+|+|||-||+..|..|.+
T Consensus 2 ~VvVIGaGisGL~aA~~L~~ 21 (435)
T PLN02268 2 SVIVIGGGIAGIAAARALHD 21 (435)
T ss_pred CEEEECCCHHHHHHHHHHHh
Confidence 78999999999999999966
No 343
>PRK11559 garR tartronate semialdehyde reductase; Provisional
Probab=49.50 E-value=75 Score=32.69 Aligned_cols=32 Identities=16% Similarity=0.243 Sum_probs=25.1
Q ss_pred ceEEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEccc
Q 007802 330 QTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSK 373 (589)
Q Consensus 330 ~riv~~GAGsAg~GiA~ll~~~~~~~~G~s~eeA~~~i~~vD~~ 373 (589)
.||.|+|.|..|..+|..+.. .|. +++++|++
T Consensus 3 ~~IgviG~G~mG~~~a~~l~~-----~g~-------~v~~~d~~ 34 (296)
T PRK11559 3 MKVGFIGLGIMGKPMSKNLLK-----AGY-------SLVVYDRN 34 (296)
T ss_pred ceEEEEccCHHHHHHHHHHHH-----CCC-------eEEEEcCC
Confidence 379999999999999998865 253 46777764
No 344
>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]
Probab=49.41 E-value=21 Score=38.45 Aligned_cols=35 Identities=20% Similarity=0.314 Sum_probs=26.8
Q ss_pred ceEEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEcccCcc
Q 007802 330 QTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLI 376 (589)
Q Consensus 330 ~riv~~GAGsAg~GiA~ll~~~~~~~~G~s~eeA~~~i~~vD~~GLv 376 (589)
-.|+|+|||.||...|..+.+. |+ ++.++|++..+
T Consensus 4 ~DVvIVGaGPAGs~aA~~la~~-----G~-------~VlvlEk~~~~ 38 (396)
T COG0644 4 YDVVIVGAGPAGSSAARRLAKA-----GL-------DVLVLEKGSEP 38 (396)
T ss_pred eeEEEECCchHHHHHHHHHHHc-----CC-------eEEEEecCCCC
Confidence 4689999999999999988764 64 46677775444
No 345
>PRK13394 3-hydroxybutyrate dehydrogenase; Provisional
Probab=49.30 E-value=49 Score=32.40 Aligned_cols=36 Identities=28% Similarity=0.338 Sum_probs=23.2
Q ss_pred CCCCceEEEeCc-ChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEccc
Q 007802 326 TLADQTFLFLGA-GEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSK 373 (589)
Q Consensus 326 ~l~d~riv~~GA-GsAg~GiA~ll~~~~~~~~G~s~eeA~~~i~~vD~~ 373 (589)
+++..+++|.|| |..|..+++.+. + .|. ++++++++
T Consensus 4 ~~~~~~vlItGasg~iG~~la~~l~----~-~G~-------~v~~~~r~ 40 (262)
T PRK13394 4 NLNGKTAVVTGAASGIGKEIALELA----R-AGA-------AVAIADLN 40 (262)
T ss_pred cCCCCEEEEECCCChHHHHHHHHHH----H-CCC-------eEEEEeCC
Confidence 366788999998 555555555553 3 363 57777764
No 346
>PRK06475 salicylate hydroxylase; Provisional
Probab=49.17 E-value=19 Score=38.60 Aligned_cols=21 Identities=38% Similarity=0.355 Sum_probs=18.6
Q ss_pred ceEEEeCcChHHHHHHHHHHH
Q 007802 330 QTFLFLGAGEAGTGIAELIAL 350 (589)
Q Consensus 330 ~riv~~GAGsAg~GiA~ll~~ 350 (589)
+||+|+|||.||+..|-.|.+
T Consensus 3 ~~V~IvGgGiaGl~~A~~L~~ 23 (400)
T PRK06475 3 GSPLIAGAGVAGLSAALELAA 23 (400)
T ss_pred CcEEEECCCHHHHHHHHHHHh
Confidence 899999999999999987754
No 347
>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G ....
Probab=49.03 E-value=25 Score=28.85 Aligned_cols=31 Identities=19% Similarity=0.334 Sum_probs=23.6
Q ss_pred EeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEcccCcc
Q 007802 334 FLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLI 376 (589)
Q Consensus 334 ~~GAGsAg~GiA~ll~~~~~~~~G~s~eeA~~~i~~vD~~GLv 376 (589)
|+|||.+|+..|-.|.+. | .+|.+++++--+
T Consensus 1 IiGaG~sGl~aA~~L~~~-----g-------~~v~v~E~~~~~ 31 (68)
T PF13450_consen 1 IIGAGISGLAAAYYLAKA-----G-------YRVTVFEKNDRL 31 (68)
T ss_dssp EES-SHHHHHHHHHHHHT-----T-------SEEEEEESSSSS
T ss_pred CEeeCHHHHHHHHHHHHC-----C-------CcEEEEecCccc
Confidence 689999999999988652 4 579999987443
No 348
>cd01493 APPBP1_RUB Ubiquitin activating enzyme (E1) subunit APPBP1. APPBP1 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. ABPP1 contains part of the adenylation domain.
Probab=48.68 E-value=19 Score=40.08 Aligned_cols=38 Identities=24% Similarity=0.297 Sum_probs=33.1
Q ss_pred CCCCCceEEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEccc
Q 007802 325 GTLADQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSK 373 (589)
Q Consensus 325 ~~l~d~riv~~GAGsAg~GiA~ll~~~~~~~~G~s~eeA~~~i~~vD~~ 373 (589)
+.|++-+|+++|+|..|+-+++.|+.. |+ ++|.++|.+
T Consensus 16 ~~L~~s~VlliG~gglGsEilKNLvL~-----GI------g~~tIvD~~ 53 (425)
T cd01493 16 AALESAHVCLLNATATGTEILKNLVLP-----GI------GSFTIVDGS 53 (425)
T ss_pred HHHhhCeEEEEcCcHHHHHHHHHHHHc-----CC------CeEEEECCC
Confidence 357889999999999999999998764 87 789999987
No 349
>TIGR01181 dTDP_gluc_dehyt dTDP-glucose 4,6-dehydratase. This protein is related to UDP-glucose 4-epimerase (GalE) and likewise has an NAD cofactor.
Probab=48.62 E-value=78 Score=31.70 Aligned_cols=78 Identities=13% Similarity=0.215 Sum_probs=43.4
Q ss_pred eEEEeCc-ChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEcccCcccCCcccCCchh----chhhhc-ccCCCCCHHHH
Q 007802 331 TFLFLGA-GEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLIVSSRKESLQHF----KKPWAH-EHAPIKSLLDA 404 (589)
Q Consensus 331 riv~~GA-GsAg~GiA~ll~~~~~~~~G~s~eeA~~~i~~vD~~GLv~~~r~~~l~~~----k~~fa~-~~~~~~~L~e~ 404 (589)
+|+|.|| |..|-.+++.|+.. |- ..+++.+|+... ..+.+.+... ...+.. +-.+..++.++
T Consensus 1 ~ilItGatG~iG~~l~~~l~~~-----~~-----~~~v~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~ 68 (317)
T TIGR01181 1 RILVTGGAGFIGSNFVRYILNE-----HP-----DAEVIVLDKLTY--AGNLENLADLEDNPRYRFVKGDIGDRELVSRL 68 (317)
T ss_pred CEEEEcCCchHHHHHHHHHHHh-----CC-----CCEEEEecCCCc--chhhhhhhhhccCCCcEEEEcCCcCHHHHHHH
Confidence 5888887 78887787776542 31 136777775311 0111111111 111111 22223467888
Q ss_pred HhccCCcEEEeecCCC
Q 007802 405 VKAIKPTMLMGTSGVG 420 (589)
Q Consensus 405 V~~vkPtvLIG~S~~~ 420 (589)
++..+||++|=+++..
T Consensus 69 ~~~~~~d~vi~~a~~~ 84 (317)
T TIGR01181 69 FTEHQPDAVVHFAAES 84 (317)
T ss_pred HhhcCCCEEEEccccc
Confidence 8888899999888753
No 350
>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=48.12 E-value=20 Score=38.22 Aligned_cols=33 Identities=18% Similarity=0.329 Sum_probs=25.5
Q ss_pred CceEEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEccc
Q 007802 329 DQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSK 373 (589)
Q Consensus 329 d~riv~~GAGsAg~GiA~ll~~~~~~~~G~s~eeA~~~i~~vD~~ 373 (589)
+.+|+|+|||.||+..|-.|.+ .|+ ++.++|++
T Consensus 18 ~~dV~IvGaG~aGl~~A~~L~~-----~G~-------~v~v~E~~ 50 (415)
T PRK07364 18 TYDVAIVGGGIVGLTLAAALKD-----SGL-------RIALIEAQ 50 (415)
T ss_pred ccCEEEECcCHHHHHHHHHHhc-----CCC-------EEEEEecC
Confidence 4689999999999999998865 364 46666654
No 351
>PRK09126 hypothetical protein; Provisional
Probab=47.87 E-value=22 Score=37.56 Aligned_cols=33 Identities=27% Similarity=0.447 Sum_probs=25.0
Q ss_pred CceEEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEccc
Q 007802 329 DQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSK 373 (589)
Q Consensus 329 d~riv~~GAGsAg~GiA~ll~~~~~~~~G~s~eeA~~~i~~vD~~ 373 (589)
+..|+|+|||.||+..|-.|.+ .|+ ++.++|+.
T Consensus 3 ~~dviIvGgG~aGl~~A~~L~~-----~G~-------~v~v~E~~ 35 (392)
T PRK09126 3 HSDIVVVGAGPAGLSFARSLAG-----SGL-------KVTLIERQ 35 (392)
T ss_pred cccEEEECcCHHHHHHHHHHHh-----CCC-------cEEEEeCC
Confidence 4579999999999999988865 364 35666654
No 352
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=47.75 E-value=16 Score=39.88 Aligned_cols=36 Identities=19% Similarity=0.337 Sum_probs=26.5
Q ss_pred CCCCceEEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEccc
Q 007802 326 TLADQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSK 373 (589)
Q Consensus 326 ~l~d~riv~~GAGsAg~GiA~ll~~~~~~~~G~s~eeA~~~i~~vD~~ 373 (589)
..+..||||+|+|.||+..|+.|. + . .-+|.++|.+
T Consensus 7 ~~~~~~vVIvGgG~aGl~~a~~L~----~-~-------~~~ItlI~~~ 42 (424)
T PTZ00318 7 RLKKPNVVVLGTGWAGAYFVRNLD----P-K-------KYNITVISPR 42 (424)
T ss_pred CCCCCeEEEECCCHHHHHHHHHhC----c-C-------CCeEEEEcCC
Confidence 456679999999999999887652 1 1 2358888865
No 353
>TIGR01790 carotene-cycl lycopene cyclase family protein. This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene.
Probab=47.67 E-value=21 Score=37.72 Aligned_cols=31 Identities=26% Similarity=0.420 Sum_probs=24.7
Q ss_pred EEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEcccC
Q 007802 332 FLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKG 374 (589)
Q Consensus 332 iv~~GAGsAg~GiA~ll~~~~~~~~G~s~eeA~~~i~~vD~~G 374 (589)
|+|+|||.||+..|..+.+ .|+ ++.++|++.
T Consensus 2 viIiGaG~AGl~~A~~la~-----~g~-------~v~liE~~~ 32 (388)
T TIGR01790 2 LAVIGGGPAGLAIALELAR-----PGL-------RVQLIEPHP 32 (388)
T ss_pred EEEECCCHHHHHHHHHHHh-----CCC-------eEEEEccCC
Confidence 7999999999999977643 253 688899764
No 354
>PRK09186 flagellin modification protein A; Provisional
Probab=47.20 E-value=48 Score=32.45 Aligned_cols=35 Identities=26% Similarity=0.387 Sum_probs=21.1
Q ss_pred CCCceEEEeCcC-hHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEccc
Q 007802 327 LADQTFLFLGAG-EAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSK 373 (589)
Q Consensus 327 l~d~riv~~GAG-sAg~GiA~ll~~~~~~~~G~s~eeA~~~i~~vD~~ 373 (589)
+++.+++|.||+ ..|..+|+.+ .+ +|. ++.+++++
T Consensus 2 ~~~k~vlItGas~giG~~~a~~l----~~-~g~-------~v~~~~r~ 37 (256)
T PRK09186 2 LKGKTILITGAGGLIGSALVKAI----LE-AGG-------IVIAADID 37 (256)
T ss_pred CCCCEEEEECCCchHHHHHHHHH----HH-CCC-------EEEEEecC
Confidence 467899999984 3444444444 33 363 46766653
No 355
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=47.19 E-value=15 Score=32.32 Aligned_cols=37 Identities=19% Similarity=0.287 Sum_probs=26.7
Q ss_pred CCCCceEEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEcccC
Q 007802 326 TLADQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKG 374 (589)
Q Consensus 326 ~l~d~riv~~GAGsAg~GiA~ll~~~~~~~~G~s~eeA~~~i~~vD~~G 374 (589)
+|++.++|++|+|..|.-=+++|+++ | -++.++...-
T Consensus 4 ~l~~~~vlVvGgG~va~~k~~~Ll~~-----g-------A~v~vis~~~ 40 (103)
T PF13241_consen 4 DLKGKRVLVVGGGPVAARKARLLLEA-----G-------AKVTVISPEI 40 (103)
T ss_dssp --TT-EEEEEEESHHHHHHHHHHCCC-----T-------BEEEEEESSE
T ss_pred EcCCCEEEEECCCHHHHHHHHHHHhC-----C-------CEEEEECCch
Confidence 58899999999999998877777542 4 4678777763
No 356
>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional
Probab=47.13 E-value=23 Score=36.38 Aligned_cols=35 Identities=23% Similarity=0.271 Sum_probs=27.3
Q ss_pred CCceEEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEcccC
Q 007802 328 ADQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKG 374 (589)
Q Consensus 328 ~d~riv~~GAGsAg~GiA~ll~~~~~~~~G~s~eeA~~~i~~vD~~G 374 (589)
.+..|+|+|||.||+..|-.+.. .|+ ++.++|++-
T Consensus 24 ~~~DVvIVGgGpAGl~AA~~la~-----~G~-------~V~liEk~~ 58 (257)
T PRK04176 24 LEVDVAIVGAGPSGLTAAYYLAK-----AGL-------KVAVFERKL 58 (257)
T ss_pred ccCCEEEECccHHHHHHHHHHHh-----CCC-------eEEEEecCC
Confidence 35679999999999999887644 364 588888764
No 357
>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=46.92 E-value=2.3e+02 Score=33.58 Aligned_cols=107 Identities=14% Similarity=0.047 Sum_probs=61.2
Q ss_pred HHHhccCCcEEEeecCCCCCCCHHHHHHHHcCCCCcEEEecCCCCCC--------CCCCHHHHhccccCcEEEeeCCCCC
Q 007802 403 DAVKAIKPTMLMGTSGVGKTFTKEVVEAMASFNEKPVIFALSNPTSQ--------SECTAEEAYTWSKGQAIFASGSPFD 474 (589)
Q Consensus 403 e~V~~vkPtvLIG~S~~~g~Fteevv~~Ma~~~erPIIFaLSNPt~~--------~E~t~eda~~wT~GraifAsGSPf~ 474 (589)
++=+.++|+++|..+|.. +.-.-+.....+-+|=|.+=.-||... .+-|-++..++... |+..-=..
T Consensus 410 ~le~~~~~~~ilasnTS~--l~i~~la~~~~~p~r~ig~Hff~P~~~~~lVEvv~g~~Ts~~~~~~~~~---~~~~~gk~ 484 (708)
T PRK11154 410 EVEQNCAPHTIFASNTSS--LPIGQIAAAAARPEQVIGLHYFSPVEKMPLVEVIPHAKTSAETIATTVA---LAKKQGKT 484 (708)
T ss_pred HHHhhCCCCcEEEECCCC--CCHHHHHHhcCcccceEEEecCCccccCceEEEECCCCCCHHHHHHHHH---HHHHcCCc
Confidence 333557899999877743 444444444455566688889998853 23343444332110 11111234
Q ss_pred cceeCCeeeCCCCccccccchhhhHHHHHhCCcccCHHHHHHHH
Q 007802 475 PVEYNGKVFVPGQGNNAYIFPGLGLGLIISGAIRVRDEMLLAAS 518 (589)
Q Consensus 475 pv~~~G~~~~p~Q~NN~~iFPGiglG~~~~~a~~Itd~m~~aAA 518 (589)
||.. ...||..=|-..+|-+--++.+...- ++.+-+-.|.
T Consensus 485 pv~v---~d~pGfi~nRl~~~~~~EA~~lv~eG-v~~~dID~a~ 524 (708)
T PRK11154 485 PIVV---RDGAGFYVNRILAPYINEAARLLLEG-EPIEHIDAAL 524 (708)
T ss_pred eEEE---eccCcHHHHHHHHHHHHHHHHHHHcC-CCHHHHHHHH
Confidence 5554 25778888888888777666665543 4555555554
No 358
>TIGR02082 metH 5-methyltetrahydrofolate--homocysteine methyltransferase. S-methyltransferase (MetE, EC 2.1.1.14, the cobalamin-independent methionine synthase) and betaine-homocysteine methyltransferase.
Probab=46.89 E-value=2.1e+02 Score=36.36 Aligned_cols=67 Identities=16% Similarity=0.281 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHhccCCCHHhhcCeEEEEcccCcccCCcccCCchhchhhhcccCCCCCHHHHHhcc-----CCcEEEeec
Q 007802 343 GIAELIALEMSKQTKAPIEEARKKIWLVDSKGLIVSSRKESLQHFKKPWAHEHAPIKSLLDAVKAI-----KPTMLMGTS 417 (589)
Q Consensus 343 GiA~ll~~~~~~~~G~s~eeA~~~i~~vD~~GLv~~~r~~~l~~~k~~fa~~~~~~~~L~e~V~~v-----kPtvLIG~S 417 (589)
-|++.++..+.++.|++. ++|| +|.- ..+-+-. .+ .+..++. . -.|+|+.+ ..-+++|+|
T Consensus 486 ~i~~~~~~~~~~~~Gi~~----edIi-~DP~-i~~v~~g--~~-e~n~~~~-----~-~le~i~~ik~~~pg~~~~~GlS 550 (1178)
T TIGR02082 486 EICKRAYNILTEKVGFPP----EDII-FDPN-ILTIATG--IE-EHRRYAI-----N-FIEAIRWIKEELPDAKISGGVS 550 (1178)
T ss_pred HHHHHHHHHHHHHcCCCH----HHEE-EeCC-ccccccC--ch-HHHHHHH-----H-HHHHHHHHHHhCCCCceEEEec
Confidence 388888887765469974 5666 7763 2222111 11 2222222 1 33566666 456999999
Q ss_pred CCCCCCC
Q 007802 418 GVGKTFT 424 (589)
Q Consensus 418 ~~~g~Ft 424 (589)
...=-|.
T Consensus 551 N~SFglp 557 (1178)
T TIGR02082 551 NVSFSFR 557 (1178)
T ss_pred ccccCCC
Confidence 8875563
No 359
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=46.86 E-value=24 Score=38.82 Aligned_cols=35 Identities=20% Similarity=0.315 Sum_probs=27.6
Q ss_pred CCCceEEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEccc
Q 007802 327 LADQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSK 373 (589)
Q Consensus 327 l~d~riv~~GAGsAg~GiA~ll~~~~~~~~G~s~eeA~~~i~~vD~~ 373 (589)
-...+|+|+|+|.||+..|..+.. .| .++.++|+.
T Consensus 138 ~~~~~VvIIGgGpaGl~aA~~l~~-----~g-------~~V~lie~~ 172 (457)
T PRK11749 138 KTGKKVAVIGAGPAGLTAAHRLAR-----KG-------YDVTIFEAR 172 (457)
T ss_pred cCCCcEEEECCCHHHHHHHHHHHh-----CC-------CeEEEEccC
Confidence 346799999999999999887743 25 468888875
No 360
>PF06690 DUF1188: Protein of unknown function (DUF1188); InterPro: IPR009573 This family consists of several hypothetical archaeal proteins of around 260 residues in length, which seem to be specific to Methanobacterium, Methanococcus and Methanopyrus species. The function of this family is unknown.
Probab=46.86 E-value=38 Score=35.44 Aligned_cols=145 Identities=19% Similarity=0.290 Sum_probs=84.5
Q ss_pred hCCCCCCceEEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEcccCcccCCcccCCchhchhhhcccCCC-CCH
Q 007802 323 VGGTLADQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLIVSSRKESLQHFKKPWAHEHAPI-KSL 401 (589)
Q Consensus 323 ~g~~l~d~riv~~GAGsAg~GiA~ll~~~~~~~~G~s~eeA~~~i~~vD~~GLv~~~r~~~l~~~k~~fa~~~~~~-~~L 401 (589)
-|..++ ++||+||=--|.+||+.|... + +|+++|.+ +|.+.+..+.-.. ..+
T Consensus 38 e~~~~k--~~lI~G~YltG~~iA~~L~~~-----------~--eV~lvDI~------------p~lk~ll~~~i~F~~~~ 90 (252)
T PF06690_consen 38 EGEEFK--QALIFGAYLTGNFIASALSKK-----------C--EVTLVDIH------------PHLKELLNENIKFMEFR 90 (252)
T ss_pred cccccc--eEEEEEEEeehHHHHHHhccC-----------c--eEEEEeCc------------HHHHHHhcCCCceeecc
Confidence 345555 999999999999999987431 2 79999975 2333332111010 111
Q ss_pred HHHHhccCCcEEEeecCCCCCCCHHHHHHHHcCCCCcEEEecCCCCCCCCCCHHHHhccccCcEEEeeCCCCCcceeCCe
Q 007802 402 LDAVKAIKPTMLMGTSGVGKTFTKEVVEAMASFNEKPVIFALSNPTSQSECTAEEAYTWSKGQAIFASGSPFDPVEYNGK 481 (589)
Q Consensus 402 ~e~V~~vkPtvLIG~S~~~g~Fteevv~~Ma~~~erPIIFaLSNPt~~~E~t~eda~~wT~GraifAsGSPf~pv~~~G~ 481 (589)
.+ . .++||++|=++|-||+ +++.++.. .|=+|=.=||. ++-+=.+.++..+ .
T Consensus 91 ~~-~-~~~~DlIID~TGlGGv-~~~~Ls~~-----~p~v~IVEdP~--~~~sD~~I~~~~n------------------t 142 (252)
T PF06690_consen 91 NG-L-EGNPDLIIDTTGLGGV-DPDFLSKF-----NPKVFIVEDPK--GDGSDKTIYEINN------------------T 142 (252)
T ss_pred CC-C-CCCCCEEEECCCCCCC-CHHHHhcc-----CCCEEEEECCC--ccCcchhhhhccc------------------H
Confidence 11 1 2479999999999996 99998865 37778788888 4443333333211 1
Q ss_pred eeCCC--Cccccccchhh--hHHHHHhCCcccCHHHHHHHHHHHH
Q 007802 482 VFVPG--QGNNAYIFPGL--GLGLIISGAIRVRDEMLLAASEALA 522 (589)
Q Consensus 482 ~~~p~--Q~NN~~iFPGi--glG~~~~~a~~Itd~m~~aAA~aLA 522 (589)
.-.+. -+.+..+.=-- |+.+=.||-=++|=+.+..|+..+=
T Consensus 143 ~erl~~~~~~~kg~LkT~r~~~~sKTSGTMTLTIdt~r~s~~~i~ 187 (252)
T PF06690_consen 143 EERLNAINGEKKGILKTYRSGLVSKTSGTMTLTIDTLRDSMNEIE 187 (252)
T ss_pred HHHHhhhcccceeEEEEeeccccccccceEEEEHHHHHHHHHHHH
Confidence 11111 11222222222 4455566777778777776666553
No 361
>PF04320 DUF469: Protein with unknown function (DUF469); InterPro: IPR007416 This entry represents a family of uncharacterised proteins which are predicted to function as phosphotransferases.
Probab=46.80 E-value=16 Score=33.23 Aligned_cols=32 Identities=16% Similarity=0.445 Sum_probs=25.1
Q ss_pred CChhhHHHHHHHHHHHHHH---hcCCceeeEeecC
Q 007802 251 ATGQEYAELLQEFMTAVKQ---NYGEKVLIQFEDF 282 (589)
Q Consensus 251 ~~g~~y~~fidefv~av~~---~fGp~~lIq~EDf 282 (589)
++.++||.|+|+|+..|.+ .||.....+||-|
T Consensus 27 ~~~e~~D~~~D~fId~Ie~~gL~~~Ggg~~~~eG~ 61 (101)
T PF04320_consen 27 TSEEQIDAFVDAFIDVIEPNGLAFGGGGYEQWEGF 61 (101)
T ss_pred CCHHHHHHHHHHHHHHHHhCCCEEecCCccCEeEE
Confidence 5678999999999998888 4666656666655
No 362
>TIGR00031 UDP-GALP_mutase UDP-galactopyranose mutase. The gene is known as glf, ceoA, and rfbD. It is known experimentally in E. coli, Mycobacterium tuberculosis, and Klebsiella pneumoniae.
Probab=46.53 E-value=25 Score=38.58 Aligned_cols=31 Identities=26% Similarity=0.627 Sum_probs=25.0
Q ss_pred eEEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEccc
Q 007802 331 TFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSK 373 (589)
Q Consensus 331 riv~~GAGsAg~GiA~ll~~~~~~~~G~s~eeA~~~i~~vD~~ 373 (589)
+++|+|||.||+.+|..|.+ .| .++.++|+.
T Consensus 3 DvvIIGaG~aGlsaA~~La~-----~G-------~~V~viEk~ 33 (377)
T TIGR00031 3 DYIIVGAGLSGIVLANILAQ-----LN-------KRVLVVEKR 33 (377)
T ss_pred cEEEECCCHHHHHHHHHHHh-----CC-------CeEEEEecC
Confidence 58999999999999987764 25 468888874
No 363
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=46.41 E-value=25 Score=38.27 Aligned_cols=33 Identities=30% Similarity=0.476 Sum_probs=27.2
Q ss_pred ceEEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEcccC
Q 007802 330 QTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKG 374 (589)
Q Consensus 330 ~riv~~GAGsAg~GiA~ll~~~~~~~~G~s~eeA~~~i~~vD~~G 374 (589)
-.|||+|||+||+..|..+.+ .| .++.++|++.
T Consensus 4 ~dvvVIG~GpaG~~aA~~l~~-----~g-------~~V~liE~~~ 36 (438)
T PRK07251 4 YDLIVIGFGKAGKTLAAKLAS-----AG-------KKVALVEESK 36 (438)
T ss_pred cCEEEECCCHHHHHHHHHHHh-----CC-------CEEEEEecCC
Confidence 469999999999999988755 25 5699999864
No 364
>TIGR00274 N-acetylmuramic acid 6-phosphate etherase. This protein, MurQ, is involved in recycling components of the bacterial murein sacculus turned over during cell growth. The cell wall metabolite anhydro-N-acetylmuramic acid (anhMurNAc) is converted by a kinase, AnmK, to MurNAc-phosphate, then converted to N-acetylglucosamine-phosphate by this etherase, called MurQ. This family of proteins is similar to the C-terminal half of a number of vertebrate glucokinase regulator proteins and contains a Prosite pattern which is shared by this group of proteins in a region of local similarity.
Probab=46.38 E-value=47 Score=35.14 Aligned_cols=39 Identities=23% Similarity=0.326 Sum_probs=28.6
Q ss_pred cCCcEEEeecCCCCCCCHHHHHHHHcCCC--CcEEEecCCCCC
Q 007802 408 IKPTMLMGTSGVGKTFTKEVVEAMASFNE--KPVIFALSNPTS 448 (589)
Q Consensus 408 vkPtvLIG~S~~~g~Fteevv~~Ma~~~e--rPIIFaLSNPt~ 448 (589)
-+-|++||+|..|. |++++..+....+ -|+|.=-+||.+
T Consensus 125 ~~~DvvI~IS~SG~--T~~vi~al~~Ak~~Ga~tIaIT~~~~s 165 (291)
T TIGR00274 125 TKNDVVVGIAASGR--TPYVIAGLQYARSLGALTISIACNPKS 165 (291)
T ss_pred CCCCEEEEEeCCCC--cHHHHHHHHHHHHCCCeEEEEECCCCC
Confidence 35699999999775 8999888764433 377776677763
No 365
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=46.29 E-value=23 Score=38.79 Aligned_cols=33 Identities=24% Similarity=0.240 Sum_probs=26.7
Q ss_pred ceEEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEcccC
Q 007802 330 QTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKG 374 (589)
Q Consensus 330 ~riv~~GAGsAg~GiA~ll~~~~~~~~G~s~eeA~~~i~~vD~~G 374 (589)
-.+||+|||+||+..|..+... | .++.++|++.
T Consensus 5 yDvvVIGaGpaG~~aA~~aa~~-----G-------~~V~liE~~~ 37 (462)
T PRK06416 5 YDVIVIGAGPGGYVAAIRAAQL-----G-------LKVAIVEKEK 37 (462)
T ss_pred ccEEEECCCHHHHHHHHHHHHC-----C-------CcEEEEeccc
Confidence 3689999999999999887552 5 4789999864
No 366
>PRK06753 hypothetical protein; Provisional
Probab=46.16 E-value=25 Score=36.91 Aligned_cols=20 Identities=30% Similarity=0.446 Sum_probs=17.6
Q ss_pred eEEEeCcChHHHHHHHHHHH
Q 007802 331 TFLFLGAGEAGTGIAELIAL 350 (589)
Q Consensus 331 riv~~GAGsAg~GiA~ll~~ 350 (589)
+|+|+|||.||+..|-.|.+
T Consensus 2 ~V~IvGgG~aGl~~A~~L~~ 21 (373)
T PRK06753 2 KIAIIGAGIGGLTAAALLQE 21 (373)
T ss_pred EEEEECCCHHHHHHHHHHHh
Confidence 79999999999999988755
No 367
>PRK06392 homoserine dehydrogenase; Provisional
Probab=45.86 E-value=77 Score=34.14 Aligned_cols=82 Identities=13% Similarity=0.243 Sum_probs=49.1
Q ss_pred eEEEeCcChHHHHHHHHHHHHHH-hccCCCHHhhcCeEEEEcccCcccCCcccCCchhchhhhcc----cCCCC--CHHH
Q 007802 331 TFLFLGAGEAGTGIAELIALEMS-KQTKAPIEEARKKIWLVDSKGLIVSSRKESLQHFKKPWAHE----HAPIK--SLLD 403 (589)
Q Consensus 331 riv~~GAGsAg~GiA~ll~~~~~-~~~G~s~eeA~~~i~~vD~~GLv~~~r~~~l~~~k~~fa~~----~~~~~--~L~e 403 (589)
||.++|.|..|-+++++|.+.-. ++.|+. -+=+.+.|++|.+.....=++.+.. .+... ..... ++.+
T Consensus 2 rVaIiGfG~VG~~va~~L~~~~~~~~~g~~----l~VVaVsds~g~l~~~~Gldl~~l~-~~~~~g~l~~~~~~~~~~~~ 76 (326)
T PRK06392 2 RISIIGLGNVGLNVLRIIKSRNDDRRNNNG----ISVVSVSDSKLSYYNERGLDIGKII-SYKEKGRLEEIDYEKIKFDE 76 (326)
T ss_pred EEEEECCCHHHHHHHHHHHhCHHhHhcCCC----eEEEEEEECCCcccCCcCCChHHHH-HHHhcCccccCCCCcCCHHH
Confidence 79999999999999999866210 112321 1235567999988876531222211 11111 01112 5666
Q ss_pred HHhccCCcEEEeecC
Q 007802 404 AVKAIKPTMLMGTSG 418 (589)
Q Consensus 404 ~V~~vkPtvLIG~S~ 418 (589)
.++ .+||++|=++.
T Consensus 77 ll~-~~~DVvVE~t~ 90 (326)
T PRK06392 77 IFE-IKPDVIVDVTP 90 (326)
T ss_pred Hhc-CCCCEEEECCC
Confidence 665 58999998874
No 368
>cd05006 SIS_GmhA Phosphoheptose isomerase is a member of the SIS (Sugar ISomerase) superfamily. Phosphoheptose isomerase catalyzes the isomerization of sedoheptulose 7-phosphate into D-glycero-D-mannoheptose 7-phosphate. This is the first step of the biosynthesis of gram-negative bacteria inner core lipopolysaccharide precursor, L-glycero-D-mannoheptose (Gmh).
Probab=45.67 E-value=1.2e+02 Score=28.98 Aligned_cols=22 Identities=27% Similarity=0.439 Sum_probs=18.8
Q ss_pred CCcEEEeecCCCCCCCHHHHHHHH
Q 007802 409 KPTMLMGTSGVGKTFTKEVVEAMA 432 (589)
Q Consensus 409 kPtvLIG~S~~~g~Fteevv~~Ma 432 (589)
+-|++|++|..| -|+++++.+.
T Consensus 101 ~~Dv~I~iS~SG--~t~~~i~~~~ 122 (177)
T cd05006 101 PGDVLIGISTSG--NSPNVLKALE 122 (177)
T ss_pred CCCEEEEEeCCC--CCHHHHHHHH
Confidence 469999999877 5999999886
No 369
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=45.63 E-value=30 Score=40.86 Aligned_cols=36 Identities=17% Similarity=0.232 Sum_probs=29.2
Q ss_pred CCCCceEEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEccc
Q 007802 326 TLADQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSK 373 (589)
Q Consensus 326 ~l~d~riv~~GAGsAg~GiA~ll~~~~~~~~G~s~eeA~~~i~~vD~~ 373 (589)
+-.+.+|+|+|||.||+..|..+.. .|. ++.++|+.
T Consensus 428 ~~~~~~V~IIGaGpAGl~aA~~l~~-----~G~-------~V~v~e~~ 463 (752)
T PRK12778 428 EKNGKKVAVIGSGPAGLSFAGDLAK-----RGY-------DVTVFEAL 463 (752)
T ss_pred CCCCCEEEEECcCHHHHHHHHHHHH-----CCC-------eEEEEecC
Confidence 3467899999999999999998865 263 68889874
No 370
>PRK05441 murQ N-acetylmuramic acid-6-phosphate etherase; Reviewed
Probab=45.53 E-value=32 Score=36.38 Aligned_cols=39 Identities=23% Similarity=0.262 Sum_probs=27.6
Q ss_pred cCCcEEEeecCCCCCCCHHHHHHHHcCC--CCcEEEecCCCCC
Q 007802 408 IKPTMLMGTSGVGKTFTKEVVEAMASFN--EKPVIFALSNPTS 448 (589)
Q Consensus 408 vkPtvLIG~S~~~g~Fteevv~~Ma~~~--erPIIFaLSNPt~ 448 (589)
-+-|++||+|..|. |++++..+..-. .-|+|.=-+||.+
T Consensus 130 ~~~DvvI~IS~SG~--T~~vi~al~~Ak~~Ga~tI~IT~~~~s 170 (299)
T PRK05441 130 TAKDVVVGIAASGR--TPYVIGALEYARERGALTIGISCNPGS 170 (299)
T ss_pred CCCCEEEEEeCCCC--CHHHHHHHHHHHHCCCeEEEEECCCCC
Confidence 35799999998775 899998876433 3466665566663
No 371
>PRK12831 putative oxidoreductase; Provisional
Probab=45.53 E-value=27 Score=38.88 Aligned_cols=35 Identities=17% Similarity=0.197 Sum_probs=28.0
Q ss_pred CCCceEEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEccc
Q 007802 327 LADQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSK 373 (589)
Q Consensus 327 l~d~riv~~GAGsAg~GiA~ll~~~~~~~~G~s~eeA~~~i~~vD~~ 373 (589)
-...+|+|+|+|.||+..|..+... | .++.++|+.
T Consensus 138 ~~~~~V~IIG~GpAGl~aA~~l~~~-----G-------~~V~v~e~~ 172 (464)
T PRK12831 138 KKGKKVAVIGSGPAGLTCAGDLAKM-----G-------YDVTIFEAL 172 (464)
T ss_pred CCCCEEEEECcCHHHHHHHHHHHhC-----C-------CeEEEEecC
Confidence 3567999999999999999888652 6 357888864
No 372
>TIGR03736 PRTRC_ThiF PRTRC system ThiF family protein. A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. This family is the PRTRC system ThiF family protein.
Probab=45.43 E-value=30 Score=35.86 Aligned_cols=44 Identities=18% Similarity=0.250 Sum_probs=30.8
Q ss_pred CCceEEEeCcChHHHHHHHHHHHHHH--hccCCCHHhhcCeEEEEcccC
Q 007802 328 ADQTFLFLGAGEAGTGIAELIALEMS--KQTKAPIEEARKKIWLVDSKG 374 (589)
Q Consensus 328 ~d~riv~~GAGsAg~GiA~ll~~~~~--~~~G~s~eeA~~~i~~vD~~G 374 (589)
+..||+++|+|.-|.-+++.|+..-. +.-|.. .--+|.++|.+=
T Consensus 10 ~~~~V~vvG~GGlGs~v~~~Lar~G~a~~~~G~~---~g~~i~lvD~D~ 55 (244)
T TIGR03736 10 RPVSVVLVGAGGTGSQVIAGLARLHHALKALGHP---GGLAVTVYDDDT 55 (244)
T ss_pred CCCeEEEEcCChHHHHHHHHHHHccccccccCCC---CCCEEEEECCCE
Confidence 57899999999999999999987511 001210 002899999873
No 373
>PRK12266 glpD glycerol-3-phosphate dehydrogenase; Reviewed
Probab=45.41 E-value=24 Score=39.67 Aligned_cols=33 Identities=27% Similarity=0.397 Sum_probs=26.7
Q ss_pred ceEEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEcccC
Q 007802 330 QTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKG 374 (589)
Q Consensus 330 ~riv~~GAGsAg~GiA~ll~~~~~~~~G~s~eeA~~~i~~vD~~G 374 (589)
-.|||+|+|.+|++||..+.. .|+ ++.++|+..
T Consensus 7 ~DVvIIGGGi~G~~~A~~la~-----rGl-------~V~LvEk~d 39 (508)
T PRK12266 7 YDLLVIGGGINGAGIARDAAG-----RGL-------SVLLCEQDD 39 (508)
T ss_pred CCEEEECcCHHHHHHHHHHHH-----CCC-------eEEEEecCC
Confidence 469999999999999988765 375 488888863
No 374
>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed
Probab=45.36 E-value=69 Score=30.97 Aligned_cols=36 Identities=28% Similarity=0.298 Sum_probs=24.3
Q ss_pred CCCCceEEEeCc-ChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEccc
Q 007802 326 TLADQTFLFLGA-GEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSK 373 (589)
Q Consensus 326 ~l~d~riv~~GA-GsAg~GiA~ll~~~~~~~~G~s~eeA~~~i~~vD~~ 373 (589)
.+.+.+|+|.|| |..|..+++.+.+ .| -++++++++
T Consensus 3 ~~~~~~ilItGasg~iG~~l~~~l~~-----~g-------~~V~~~~r~ 39 (251)
T PRK12826 3 DLEGRVALVTGAARGIGRAIAVRLAA-----DG-------AEVIVVDIC 39 (251)
T ss_pred CCCCCEEEEcCCCCcHHHHHHHHHHH-----CC-------CEEEEEeCC
Confidence 356789999996 5566666666543 35 358888775
No 375
>PLN02695 GDP-D-mannose-3',5'-epimerase
Probab=45.26 E-value=66 Score=34.46 Aligned_cols=97 Identities=15% Similarity=0.073 Sum_probs=57.5
Q ss_pred CCceEEEeCc-ChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEcccCcccCCcccCCchh--chhhhc-ccCCCCCHHH
Q 007802 328 ADQTFLFLGA-GEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLIVSSRKESLQHF--KKPWAH-EHAPIKSLLD 403 (589)
Q Consensus 328 ~d~riv~~GA-GsAg~GiA~ll~~~~~~~~G~s~eeA~~~i~~vD~~GLv~~~r~~~l~~~--k~~fa~-~~~~~~~L~e 403 (589)
+++||+|.|+ |-.|..+++.|.+ .| .+++.+|+..-- .+... ...+-. +..+..++.+
T Consensus 20 ~~~~IlVtGgtGfIG~~l~~~L~~-----~G-------~~V~~v~r~~~~------~~~~~~~~~~~~~~Dl~d~~~~~~ 81 (370)
T PLN02695 20 EKLRICITGAGGFIASHIARRLKA-----EG-------HYIIASDWKKNE------HMSEDMFCHEFHLVDLRVMENCLK 81 (370)
T ss_pred CCCEEEEECCccHHHHHHHHHHHh-----CC-------CEEEEEEecccc------ccccccccceEEECCCCCHHHHHH
Confidence 4689999998 9988888888865 25 368888864310 01110 111111 1111123455
Q ss_pred HHhccCCcEEEeecCCCC--C---------------CCHHHHHHHHcCCCCcEEEecC
Q 007802 404 AVKAIKPTMLMGTSGVGK--T---------------FTKEVVEAMASFNEKPVIFALS 444 (589)
Q Consensus 404 ~V~~vkPtvLIG~S~~~g--~---------------Fteevv~~Ma~~~erPIIFaLS 444 (589)
+++ ++|++|=+.+..+ . .|..+++.+.++.-+.+||.=|
T Consensus 82 ~~~--~~D~Vih~Aa~~~~~~~~~~~~~~~~~~N~~~t~nll~aa~~~~vk~~V~~SS 137 (370)
T PLN02695 82 VTK--GVDHVFNLAADMGGMGFIQSNHSVIMYNNTMISFNMLEAARINGVKRFFYASS 137 (370)
T ss_pred HHh--CCCEEEEcccccCCccccccCchhhHHHHHHHHHHHHHHHHHhCCCEEEEeCc
Confidence 554 5899998875431 1 2356778777766678998654
No 376
>PRK06182 short chain dehydrogenase; Validated
Probab=45.19 E-value=39 Score=33.81 Aligned_cols=77 Identities=18% Similarity=0.232 Sum_probs=38.2
Q ss_pred CCceEEEeCc-ChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEcccCcccCCcccCCchhchhhhc-ccCCCCCHHHHH
Q 007802 328 ADQTFLFLGA-GEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLIVSSRKESLQHFKKPWAH-EHAPIKSLLDAV 405 (589)
Q Consensus 328 ~d~riv~~GA-GsAg~GiA~ll~~~~~~~~G~s~eeA~~~i~~vD~~GLv~~~r~~~l~~~k~~fa~-~~~~~~~L~e~V 405 (589)
+..++||.|+ |..|..+|+.+ .+ .| -++++++++- ++-+.+......+.+ |-.+..++.+++
T Consensus 2 ~~k~vlItGasggiG~~la~~l----~~-~G-------~~V~~~~r~~----~~l~~~~~~~~~~~~~Dv~~~~~~~~~~ 65 (273)
T PRK06182 2 QKKVALVTGASSGIGKATARRL----AA-QG-------YTVYGAARRV----DKMEDLASLGVHPLSLDVTDEASIKAAV 65 (273)
T ss_pred CCCEEEEECCCChHHHHHHHHH----HH-CC-------CEEEEEeCCH----HHHHHHHhCCCeEEEeeCCCHHHHHHHH
Confidence 4578999997 34444444444 33 36 3577776641 110001111111111 222223555666
Q ss_pred hcc-----CCcEEEeecCCC
Q 007802 406 KAI-----KPTMLMGTSGVG 420 (589)
Q Consensus 406 ~~v-----kPtvLIG~S~~~ 420 (589)
+.+ ++|+||=..+..
T Consensus 66 ~~~~~~~~~id~li~~ag~~ 85 (273)
T PRK06182 66 DTIIAEEGRIDVLVNNAGYG 85 (273)
T ss_pred HHHHHhcCCCCEEEECCCcC
Confidence 644 799999877653
No 377
>TIGR00441 gmhA phosphoheptose isomerase. Involved in lipopolysaccharide biosynthesis it may have a role in virulence in Haemophilus ducreyi.
Probab=45.18 E-value=1.3e+02 Score=28.37 Aligned_cols=37 Identities=24% Similarity=0.262 Sum_probs=24.2
Q ss_pred CCcEEEeecCCCCCCCHHHHHHHH--cCCCCcEEEecCCCC
Q 007802 409 KPTMLMGTSGVGKTFTKEVVEAMA--SFNEKPVIFALSNPT 447 (589)
Q Consensus 409 kPtvLIG~S~~~g~Fteevv~~Ma--~~~erPIIFaLSNPt 447 (589)
+-|++|++|..| -|+++++.+. +...-|+|-=-+||.
T Consensus 79 ~~D~~i~iS~sG--~t~~~~~~~~~a~~~g~~ii~iT~~~~ 117 (154)
T TIGR00441 79 KGDVLLGISTSG--NSKNVLKAIEAAKDKGMKTITLAGKDG 117 (154)
T ss_pred CCCEEEEEcCCC--CCHHHHHHHHHHHHCCCEEEEEeCCCC
Confidence 469999999976 5888888765 333445554434443
No 378
>PRK06171 sorbitol-6-phosphate 2-dehydrogenase; Provisional
Probab=45.11 E-value=87 Score=31.02 Aligned_cols=76 Identities=20% Similarity=0.265 Sum_probs=40.5
Q ss_pred CCCCceEEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEcccCcccCCcccCCchhchhhhc-ccCCCCCHHHH
Q 007802 326 TLADQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLIVSSRKESLQHFKKPWAH-EHAPIKSLLDA 404 (589)
Q Consensus 326 ~l~d~riv~~GAGsAg~GiA~ll~~~~~~~~G~s~eeA~~~i~~vD~~GLv~~~r~~~l~~~k~~fa~-~~~~~~~L~e~ 404 (589)
+|++.++||.|+++ ||...++..+.+ .|. +++++|++.- .+...+..+.. |-.+..++.++
T Consensus 6 ~l~~k~vlItG~s~---gIG~~la~~l~~-~G~-------~v~~~~~~~~-------~~~~~~~~~~~~D~~~~~~~~~~ 67 (266)
T PRK06171 6 NLQGKIIIVTGGSS---GIGLAIVKELLA-NGA-------NVVNADIHGG-------DGQHENYQFVPTDVSSAEEVNHT 67 (266)
T ss_pred cCCCCEEEEeCCCC---hHHHHHHHHHHH-CCC-------EEEEEeCCcc-------ccccCceEEEEccCCCHHHHHHH
Confidence 47788999999653 455555555554 363 5777776421 11111111111 21222345555
Q ss_pred Hhcc-----CCcEEEeecCC
Q 007802 405 VKAI-----KPTMLMGTSGV 419 (589)
Q Consensus 405 V~~v-----kPtvLIG~S~~ 419 (589)
++.+ ++|+||=+.+.
T Consensus 68 ~~~~~~~~g~id~li~~Ag~ 87 (266)
T PRK06171 68 VAEIIEKFGRIDGLVNNAGI 87 (266)
T ss_pred HHHHHHHcCCCCEEEECCcc
Confidence 5543 67999876654
No 379
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=45.07 E-value=26 Score=40.80 Aligned_cols=34 Identities=21% Similarity=0.328 Sum_probs=27.2
Q ss_pred CCceEEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEccc
Q 007802 328 ADQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSK 373 (589)
Q Consensus 328 ~d~riv~~GAGsAg~GiA~ll~~~~~~~~G~s~eeA~~~i~~vD~~ 373 (589)
+..||+|+|+|.||+..|..+.. .|. ++.++|+.
T Consensus 192 ~~k~VaIIGaGpAGl~aA~~La~-----~G~-------~Vtv~e~~ 225 (652)
T PRK12814 192 SGKKVAIIGAGPAGLTAAYYLLR-----KGH-------DVTIFDAN 225 (652)
T ss_pred CCCEEEEECCCHHHHHHHHHHHH-----CCC-------cEEEEecC
Confidence 46799999999999999988864 253 57788765
No 380
>PRK07424 bifunctional sterol desaturase/short chain dehydrogenase; Validated
Probab=45.04 E-value=33 Score=38.00 Aligned_cols=56 Identities=23% Similarity=0.338 Sum_probs=36.9
Q ss_pred HHHcCCCceeccCCCchHHHHHHHHHHHHHHhCCCCCCceEEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEc
Q 007802 292 SKYSSSHLVFNDDIQGTASVVLAGILSALKLVGGTLADQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVD 371 (589)
Q Consensus 292 ~ryr~~~~~FnDDiQGTaaV~lAgll~Alr~~g~~l~d~riv~~GAGsAg~GiA~ll~~~~~~~~G~s~eeA~~~i~~vD 371 (589)
++|....+.+.|=..||+ .++++++++|.||.+ ||...++..+.+ .|. ++.++|
T Consensus 156 ~~~~~~~~~~~d~~~~ta---------------~sl~gK~VLITGASg---GIG~aLA~~La~-~G~-------~Vi~l~ 209 (406)
T PRK07424 156 NAYYCGTFTLVDKLMGTA---------------LSLKGKTVAVTGASG---TLGQALLKELHQ-QGA-------KVVALT 209 (406)
T ss_pred cceeeeeEEEeehhcCcc---------------cCCCCCEEEEeCCCC---HHHHHHHHHHHH-CCC-------EEEEEe
Confidence 356667789999888888 357788999999733 344444444443 353 567776
Q ss_pred cc
Q 007802 372 SK 373 (589)
Q Consensus 372 ~~ 373 (589)
++
T Consensus 210 r~ 211 (406)
T PRK07424 210 SN 211 (406)
T ss_pred CC
Confidence 54
No 381
>PRK11259 solA N-methyltryptophan oxidase; Provisional
Probab=45.03 E-value=27 Score=36.47 Aligned_cols=35 Identities=14% Similarity=0.183 Sum_probs=27.5
Q ss_pred CceEEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEcccCc
Q 007802 329 DQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGL 375 (589)
Q Consensus 329 d~riv~~GAGsAg~GiA~ll~~~~~~~~G~s~eeA~~~i~~vD~~GL 375 (589)
...|+|+|||-+|+.+|-.|.+. | .++.++|+...
T Consensus 3 ~~dv~IIGgGi~G~s~A~~L~~~-----g-------~~V~lie~~~~ 37 (376)
T PRK11259 3 RYDVIVIGLGSMGSAAGYYLARR-----G-------LRVLGLDRFMP 37 (376)
T ss_pred cccEEEECCCHHHHHHHHHHHHC-----C-------CeEEEEecccC
Confidence 34699999999999999877652 5 46889997643
No 382
>TIGR01179 galE UDP-glucose-4-epimerase. This enzyme interconverts UDP-glucose and UDP-galactose. A set of related proteins, some of which are tentatively identified as UDP-glucose-4-epimerase in Thermotoga maritima, Bacillus halodurans, and several archaea, but deeply branched from this set and lacking experimental evidence, are excluded from this model and described separately.
Probab=45.01 E-value=85 Score=31.55 Aligned_cols=97 Identities=18% Similarity=0.196 Sum_probs=51.0
Q ss_pred eEEEeCc-ChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEcccCcccCCcccCCchhc----hhhhc-ccCCCCCHHHH
Q 007802 331 TFLFLGA-GEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLIVSSRKESLQHFK----KPWAH-EHAPIKSLLDA 404 (589)
Q Consensus 331 riv~~GA-GsAg~GiA~ll~~~~~~~~G~s~eeA~~~i~~vD~~GLv~~~r~~~l~~~k----~~fa~-~~~~~~~L~e~ 404 (589)
||+|.|| |..|..+++.|.+ .| .+++++|+. .......+.... ..+.+ +..+..++.++
T Consensus 1 kvlV~GatG~iG~~l~~~l~~-----~g-------~~V~~~~~~---~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~ 65 (328)
T TIGR01179 1 KILVTGGAGYIGSHTVRQLLE-----SG-------HEVVVLDNL---SNGSPEALKRGERITRVTFVEGDLRDRELLDRL 65 (328)
T ss_pred CEEEeCCCCHHHHHHHHHHHh-----CC-------CeEEEEeCC---CccchhhhhhhccccceEEEECCCCCHHHHHHH
Confidence 5788875 7677777766644 25 346677642 111001111110 01111 11222457778
Q ss_pred HhccCCcEEEeecCCCCCC----------------CHHHHHHHHcCCCCcEEEe
Q 007802 405 VKAIKPTMLMGTSGVGKTF----------------TKEVVEAMASFNEKPVIFA 442 (589)
Q Consensus 405 V~~vkPtvLIG~S~~~g~F----------------teevv~~Ma~~~erPIIFa 442 (589)
++..++|++|=+.+..... +..+++.|.+..-+.+||.
T Consensus 66 ~~~~~~d~vv~~ag~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~v~~ 119 (328)
T TIGR01179 66 FEEHKIDAVIHFAGLIAVGESVQDPLKYYRNNVVNTLNLLEAMQQTGVKKFIFS 119 (328)
T ss_pred HHhCCCcEEEECccccCcchhhcCchhhhhhhHHHHHHHHHHHHhcCCCEEEEe
Confidence 8777899998665532111 2456777776655677773
No 383
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=45.01 E-value=33 Score=36.28 Aligned_cols=36 Identities=22% Similarity=0.307 Sum_probs=28.4
Q ss_pred CCCCceEEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEccc
Q 007802 326 TLADQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSK 373 (589)
Q Consensus 326 ~l~d~riv~~GAGsAg~GiA~ll~~~~~~~~G~s~eeA~~~i~~vD~~ 373 (589)
+-..++|||+|+|.||+..|..+.+ .| .++.++|+.
T Consensus 15 ~~~~~~VvIIG~G~aGl~aA~~l~~-----~g-------~~v~lie~~ 50 (352)
T PRK12770 15 PPTGKKVAIIGAGPAGLAAAGYLAC-----LG-------YEVHVYDKL 50 (352)
T ss_pred CCCCCEEEEECcCHHHHHHHHHHHH-----CC-------CcEEEEeCC
Confidence 3356799999999999999887754 25 468889876
No 384
>PRK07045 putative monooxygenase; Reviewed
Probab=45.00 E-value=27 Score=37.11 Aligned_cols=21 Identities=33% Similarity=0.531 Sum_probs=18.4
Q ss_pred ceEEEeCcChHHHHHHHHHHH
Q 007802 330 QTFLFLGAGEAGTGIAELIAL 350 (589)
Q Consensus 330 ~riv~~GAGsAg~GiA~ll~~ 350 (589)
-+|+|+|||.||+..|-.|.+
T Consensus 6 ~~V~IiGgGpaGl~~A~~L~~ 26 (388)
T PRK07045 6 VDVLINGSGIAGVALAHLLGA 26 (388)
T ss_pred eEEEEECCcHHHHHHHHHHHh
Confidence 479999999999999988765
No 385
>PRK05749 3-deoxy-D-manno-octulosonic-acid transferase; Reviewed
Probab=44.99 E-value=56 Score=35.14 Aligned_cols=37 Identities=24% Similarity=0.132 Sum_probs=26.3
Q ss_pred CHHHHHhccCCcE-EEeecCCCCCCCHHHHHHHHcCCCCcEEE
Q 007802 400 SLLDAVKAIKPTM-LMGTSGVGKTFTKEVVEAMASFNEKPVIF 441 (589)
Q Consensus 400 ~L~e~V~~vkPtv-LIG~S~~~g~Fteevv~~Ma~~~erPIIF 441 (589)
.|.+.... .|+ ++|-|-..+ |..-++++|+ +..|||+
T Consensus 312 el~~~y~~--aDi~~v~~S~~e~-~g~~~lEAma--~G~PVI~ 349 (425)
T PRK05749 312 ELGLLYAI--ADIAFVGGSLVKR-GGHNPLEPAA--FGVPVIS 349 (425)
T ss_pred HHHHHHHh--CCEEEECCCcCCC-CCCCHHHHHH--hCCCEEE
Confidence 45566665 787 677665443 5566899999 6899997
No 386
>PLN00093 geranylgeranyl diphosphate reductase; Provisional
Probab=44.99 E-value=25 Score=39.13 Aligned_cols=26 Identities=31% Similarity=0.411 Sum_probs=20.4
Q ss_pred CCCCC--ceEEEeCcChHHHHHHHHHHH
Q 007802 325 GTLAD--QTFLFLGAGEAGTGIAELIAL 350 (589)
Q Consensus 325 ~~l~d--~riv~~GAGsAg~GiA~ll~~ 350 (589)
+++++ -.|+|+|||.||...|..+..
T Consensus 33 ~~~~~~~~DViIVGaGPAG~~aA~~LA~ 60 (450)
T PLN00093 33 KKLSGRKLRVAVIGGGPAGACAAETLAK 60 (450)
T ss_pred CCcCCCCCeEEEECCCHHHHHHHHHHHh
Confidence 34544 368999999999999988754
No 387
>PRK09490 metH B12-dependent methionine synthase; Provisional
Probab=44.95 E-value=2e+02 Score=36.67 Aligned_cols=120 Identities=18% Similarity=0.251 Sum_probs=73.2
Q ss_pred HHHHHHHHHhcCCceeeEeecCCCc-------cHHHHHHHHcCCCceeccCCCchHHHHHHHHHHHHHHhCCCCCCceEE
Q 007802 261 QEFMTAVKQNYGEKVLIQFEDFANH-------NAFELLSKYSSSHLVFNDDIQGTASVVLAGILSALKLVGGTLADQTFL 333 (589)
Q Consensus 261 defv~av~~~fGp~~lIq~EDf~~~-------~Af~iL~ryr~~~~~FnDDiQGTaaV~lAgll~Alr~~g~~l~d~riv 333 (589)
-+.+++.-+.++...+|| |++.. +-+++..+|.-.+|+.+=|-+|.+.- .+.|
T Consensus 441 ~~ViEaaLk~~~G~~IIN--SIs~~~~~~~~~~~~~l~~kyga~vV~m~~de~G~~~t----------------~e~r-- 500 (1229)
T PRK09490 441 WEVIEAGLKCIQGKGIVN--SISLKEGEEKFIEHARLVRRYGAAVVVMAFDEQGQADT----------------RERK-- 500 (1229)
T ss_pred HHHHHHHHhhcCCCCEEE--eCCCCCCCccHHHHHHHHHHhCCCEEEEecCCCCCCCC----------------HHHH--
Confidence 456677777776777776 44432 46778889998888888887776533 1122
Q ss_pred EeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEcccCcccCCcccCCchhchhhhcccCCCCCHHHHHhcc-----
Q 007802 334 FLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLIVSSRKESLQHFKKPWAHEHAPIKSLLDAVKAI----- 408 (589)
Q Consensus 334 ~~GAGsAg~GiA~ll~~~~~~~~G~s~eeA~~~i~~vD~~GLv~~~r~~~l~~~k~~fa~~~~~~~~L~e~V~~v----- 408 (589)
+-||+.+...+.++.|++. ++|+ +|.-=+ +-+ ....+ ...++.+ ..|+|+.+
T Consensus 501 --------~~ia~r~~~~~~~~~Gi~~----~dIi-~Dplv~-~v~--t~~ee-~~~~~~~------~leair~ik~~~P 557 (1229)
T PRK09490 501 --------IEICKRAYDILTEEVGFPP----EDII-FDPNIF-AVA--TGIEE-HNNYAVD------FIEATRWIKQNLP 557 (1229)
T ss_pred --------HHHHHHHHHHHHHHcCCCH----HHEE-EcCCcc-eee--cChHH-HHHHHHH------HHHHHHHHHHHCC
Confidence 3688888887765579975 4555 777422 211 11222 2234432 34556533
Q ss_pred CCcEEEeecCCCCCC
Q 007802 409 KPTMLMGTSGVGKTF 423 (589)
Q Consensus 409 kPtvLIG~S~~~g~F 423 (589)
...+..|+|...=-|
T Consensus 558 ~~~~~~GlSNiSFgl 572 (1229)
T PRK09490 558 HAKISGGVSNVSFSF 572 (1229)
T ss_pred CCcEEEeeccccccC
Confidence 245899999987555
No 388
>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=44.88 E-value=30 Score=36.46 Aligned_cols=36 Identities=17% Similarity=0.257 Sum_probs=26.2
Q ss_pred CceEEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEccc
Q 007802 329 DQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSK 373 (589)
Q Consensus 329 d~riv~~GAGsAg~GiA~ll~~~~~~~~G~s~eeA~~~i~~vD~~ 373 (589)
.-+|+|+|||.||+..|-.|...- +.|+ ++.++|++
T Consensus 3 ~~dv~IvGaG~aGl~~A~~L~~~~--~~G~-------~v~v~E~~ 38 (395)
T PRK05732 3 RMDVIIVGGGMAGATLALALSRLS--HGGL-------PVALIEAF 38 (395)
T ss_pred cCCEEEECcCHHHHHHHHHhhhcc--cCCC-------EEEEEeCC
Confidence 457999999999999998886520 0154 57778874
No 389
>cd01976 Nitrogenase_MoFe_alpha Nitrogenase_MoFe_alpha_II: Nitrogenase MoFe protein, beta subunit. A group of proteins similar to the alpha subunit of the MoFe protein of the molybdenum (Mo-) nitrogenase. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. The Mo-nitrogenase is the most widespread and best characterized of these systems. Mo-nitrogenase consists of the MoFe protein (component 1) and the Fe protein (component 2). MoFe is an alpha2beta2 tetramer. Each alphabeta pair of MoFe contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe protein contains a single [4Fe-4S] cluster. Electrons are transferred from the [4Fe-4S] cluster of the Fe protein to the P-cluster of the MoFe and in turn to FeMoCo, the site of substrate reduction.
Probab=44.86 E-value=48 Score=36.64 Aligned_cols=87 Identities=11% Similarity=0.088 Sum_probs=47.6
Q ss_pred HHHHHHHhCCCCCCceEEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEcccCcccCCcccCCchhchh-----
Q 007802 316 ILSALKLVGGTLADQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLIVSSRKESLQHFKKP----- 390 (589)
Q Consensus 316 ll~Alr~~g~~l~d~riv~~GAGsAg~GiA~ll~~~~~~~~G~s~eeA~~~i~~vD~~GLv~~~r~~~l~~~k~~----- 390 (589)
+..++.-....|++.|++++|.++-.-.++.++ ++.|+.. ..+ |.-.... ++....++.
T Consensus 287 ~~~~l~~~~~~L~Gkrv~i~~g~~~~~~~~~~l-----~elGmev-------v~~---g~~~~~~-~~~~~~~~~~~~~~ 350 (421)
T cd01976 287 MEAVIAKYRPRLEGKTVMLYVGGLRPRHYIGAY-----EDLGMEV-------VGT---GYEFAHR-DDYERTEVIPKEGT 350 (421)
T ss_pred HHHHHHHHHHHcCCCEEEEECCCCcHHHHHHHH-----HHCCCEE-------EEE---EeecCCH-HHHhhHHhhcCCce
Confidence 455666677889999999998776655666533 2358732 111 1000000 001111100
Q ss_pred hhcccCCCCCHHHHHhccCCcEEEeecC
Q 007802 391 WAHEHAPIKSLLDAVKAIKPTMLMGTSG 418 (589)
Q Consensus 391 fa~~~~~~~~L~e~V~~vkPtvLIG~S~ 418 (589)
..-+..+...+++.++..+||++||-|-
T Consensus 351 ~i~~~~d~~e~~~~i~~~~pDliig~~~ 378 (421)
T cd01976 351 LLYDDVTHYELEEFVKRLKPDLIGSGIK 378 (421)
T ss_pred EEEcCCCHHHHHHHHHHhCCCEEEecCc
Confidence 0001122236888999999999998765
No 390
>PRK08219 short chain dehydrogenase; Provisional
Probab=44.78 E-value=91 Score=29.71 Aligned_cols=71 Identities=23% Similarity=0.300 Sum_probs=37.9
Q ss_pred ceEEEeCc-ChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEcccCcccCCcccCCchhchhh-----hc-ccCCCCCHH
Q 007802 330 QTFLFLGA-GEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLIVSSRKESLQHFKKPW-----AH-EHAPIKSLL 402 (589)
Q Consensus 330 ~riv~~GA-GsAg~GiA~ll~~~~~~~~G~s~eeA~~~i~~vD~~GLv~~~r~~~l~~~k~~f-----a~-~~~~~~~L~ 402 (589)
.+++|.|+ |..|..+++.|++ . .+++.+|++. ..+....... -+ +-.+..++.
T Consensus 4 ~~vlVtG~~g~iG~~l~~~l~~------------~-~~V~~~~r~~-------~~~~~~~~~~~~~~~~~~D~~~~~~~~ 63 (227)
T PRK08219 4 PTALITGASRGIGAAIARELAP------------T-HTLLLGGRPA-------ERLDELAAELPGATPFPVDLTDPEAIA 63 (227)
T ss_pred CEEEEecCCcHHHHHHHHHHHh------------h-CCEEEEeCCH-------HHHHHHHHHhccceEEecCCCCHHHHH
Confidence 57899897 4455555554432 1 3578887751 1111111111 11 112224566
Q ss_pred HHHhcc-CCcEEEeecCCC
Q 007802 403 DAVKAI-KPTMLMGTSGVG 420 (589)
Q Consensus 403 e~V~~v-kPtvLIG~S~~~ 420 (589)
++++.+ ++|++|-+.+..
T Consensus 64 ~~~~~~~~id~vi~~ag~~ 82 (227)
T PRK08219 64 AAVEQLGRLDVLVHNAGVA 82 (227)
T ss_pred HHHHhcCCCCEEEECCCcC
Confidence 777655 689999887764
No 391
>PLN02676 polyamine oxidase
Probab=44.60 E-value=56 Score=36.70 Aligned_cols=23 Identities=22% Similarity=0.458 Sum_probs=20.1
Q ss_pred CCceEEEeCcChHHHHHHHHHHH
Q 007802 328 ADQTFLFLGAGEAGTGIAELIAL 350 (589)
Q Consensus 328 ~d~riv~~GAGsAg~GiA~ll~~ 350 (589)
...+++|+|||.+|+..|..|.+
T Consensus 25 ~~~~v~IIGaG~sGL~aa~~L~~ 47 (487)
T PLN02676 25 PSPSVIIVGAGMSGISAAKTLSE 47 (487)
T ss_pred CCCCEEEECCCHHHHHHHHHHHH
Confidence 35679999999999999998865
No 392
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=44.59 E-value=27 Score=43.17 Aligned_cols=35 Identities=20% Similarity=0.290 Sum_probs=28.5
Q ss_pred CCCceEEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEccc
Q 007802 327 LADQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSK 373 (589)
Q Consensus 327 l~d~riv~~GAGsAg~GiA~ll~~~~~~~~G~s~eeA~~~i~~vD~~ 373 (589)
-+.+||+|+|||.||+..|..|.. .|. ++.++|+.
T Consensus 537 ~tgKkVaIIGgGPAGLsAA~~Lar-----~G~-------~VtV~Ek~ 571 (1019)
T PRK09853 537 GSRKKVAVIGAGPAGLAAAYFLAR-----AGH-------PVTVFERE 571 (1019)
T ss_pred CCCCcEEEECCCHHHHHHHHHHHH-----cCC-------eEEEEecc
Confidence 467899999999999999998865 263 57888865
No 393
>PF13580 SIS_2: SIS domain; PDB: 1TK9_C 2I22_B 2I2W_A 1X92_A 3BJZ_D 2XBL_B 2X3Y_F 2YVA_B 3CVJ_D 3TRJ_D ....
Probab=44.53 E-value=19 Score=33.29 Aligned_cols=30 Identities=27% Similarity=0.305 Sum_probs=19.6
Q ss_pred HHHHHhccCCcEEEeecCCCCCCCHHHHHHHH
Q 007802 401 LLDAVKAIKPTMLMGTSGVGKTFTKEVVEAMA 432 (589)
Q Consensus 401 L~e~V~~vkPtvLIG~S~~~g~Fteevv~~Ma 432 (589)
+.+..+.-+-|+||+.|+.|+ ++-+|+.+.
T Consensus 95 ~~~~~~~~~gDvli~iS~SG~--s~~vi~a~~ 124 (138)
T PF13580_consen 95 LLALYDIRPGDVLIVISNSGN--SPNVIEAAE 124 (138)
T ss_dssp HHHHTT--TT-EEEEEESSS---SHHHHHHHH
T ss_pred HHHHcCCCCCCEEEEECCCCC--CHHHHHHHH
Confidence 444433345799999999886 788888765
No 394
>TIGR01373 soxB sarcosine oxidase, beta subunit family, heterotetrameric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms.
Probab=44.46 E-value=34 Score=36.60 Aligned_cols=38 Identities=18% Similarity=0.278 Sum_probs=29.3
Q ss_pred CCceEEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEcccCc
Q 007802 328 ADQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGL 375 (589)
Q Consensus 328 ~d~riv~~GAGsAg~GiA~ll~~~~~~~~G~s~eeA~~~i~~vD~~GL 375 (589)
++-.|+|+|||.+|+.+|-.|.+. .|. +++.++|++.+
T Consensus 29 ~~~dvvIIGgGi~G~s~A~~L~~~----~g~------~~V~vle~~~~ 66 (407)
T TIGR01373 29 PTYDVIIVGGGGHGLATAYYLAKE----HGI------TNVAVLEKGWL 66 (407)
T ss_pred ccCCEEEECCcHHHHHHHHHHHHh----cCC------CeEEEEEcccc
Confidence 456799999999999999888652 253 47899998643
No 395
>PRK14806 bifunctional cyclohexadienyl dehydrogenase/ 3-phosphoshikimate 1-carboxyvinyltransferase; Provisional
Probab=44.34 E-value=54 Score=38.41 Aligned_cols=83 Identities=13% Similarity=0.175 Sum_probs=47.0
Q ss_pred ceEEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEcccCcccCCcccCCchhchhhhcccCCCCCHHHHHhccC
Q 007802 330 QTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLIVSSRKESLQHFKKPWAHEHAPIKSLLDAVKAIK 409 (589)
Q Consensus 330 ~riv~~GAGsAg~GiA~ll~~~~~~~~G~s~eeA~~~i~~vD~~GLv~~~r~~~l~~~k~~fa~~~~~~~~L~e~V~~vk 409 (589)
+||.|+|+|..|..+|..+... |. ..+|+.+|++ .++ +...+ .+.-......++.++++.
T Consensus 4 ~~I~IIG~G~mG~ala~~l~~~-----G~-----~~~V~~~d~~----~~~---~~~a~-~~g~~~~~~~~~~~~~~~-- 63 (735)
T PRK14806 4 GRVVVIGLGLIGGSFAKALRER-----GL-----AREVVAVDRR----AKS---LELAV-SLGVIDRGEEDLAEAVSG-- 63 (735)
T ss_pred cEEEEEeeCHHHHHHHHHHHhc-----CC-----CCEEEEEECC----hhH---HHHHH-HCCCCCcccCCHHHHhcC--
Confidence 6899999999999999988653 53 2458888874 111 11111 000000112356666653
Q ss_pred CcEEEeecCCCCCCCHHHHHHHHcC
Q 007802 410 PTMLMGTSGVGKTFTKEVVEAMASF 434 (589)
Q Consensus 410 PtvLIG~S~~~g~Fteevv~~Ma~~ 434 (589)
+|++| ++..+ ...+++++.|+.+
T Consensus 64 aDvVi-lavp~-~~~~~vl~~l~~~ 86 (735)
T PRK14806 64 ADVIV-LAVPV-LAMEKVLADLKPL 86 (735)
T ss_pred CCEEE-ECCCH-HHHHHHHHHHHHh
Confidence 66665 44433 3456777776654
No 396
>PRK06124 gluconate 5-dehydrogenase; Provisional
Probab=44.33 E-value=74 Score=31.24 Aligned_cols=39 Identities=23% Similarity=0.250 Sum_probs=26.4
Q ss_pred CCCCCCceEEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEccc
Q 007802 324 GGTLADQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSK 373 (589)
Q Consensus 324 g~~l~d~riv~~GAGsAg~GiA~ll~~~~~~~~G~s~eeA~~~i~~vD~~ 373 (589)
..++++.+++|.||++ ||...++..+.+ .|. +++++|++
T Consensus 6 ~~~~~~k~ilItGas~---~IG~~la~~l~~-~G~-------~v~~~~r~ 44 (256)
T PRK06124 6 RFSLAGQVALVTGSAR---GLGFEIARALAG-AGA-------HVLVNGRN 44 (256)
T ss_pred ccCCCCCEEEEECCCc---hHHHHHHHHHHH-cCC-------eEEEEeCC
Confidence 4568899999999743 355555555544 363 68888885
No 397
>TIGR03088 stp2 sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.
Probab=44.28 E-value=1.6e+02 Score=30.52 Aligned_cols=36 Identities=25% Similarity=0.287 Sum_probs=28.2
Q ss_pred HHHHHhccCCcEEEeecCCCCCCCHHHHHHHHcCCCCcEEE
Q 007802 401 LLDAVKAIKPTMLMGTSGVGKTFTKEVVEAMASFNEKPVIF 441 (589)
Q Consensus 401 L~e~V~~vkPtvLIG~S~~~g~Fteevv~~Ma~~~erPIIF 441 (589)
+.+.++. .|++|-.|... .|.--++++|+ +..|||.
T Consensus 266 ~~~~~~~--adi~v~pS~~E-g~~~~~lEAma--~G~Pvv~ 301 (374)
T TIGR03088 266 VPALMQA--LDLFVLPSLAE-GISNTILEAMA--SGLPVIA 301 (374)
T ss_pred HHHHHHh--cCEEEeccccc-cCchHHHHHHH--cCCCEEE
Confidence 5556665 78899877654 58999999999 6889987
No 398
>TIGR02032 GG-red-SF geranylgeranyl reductase family. This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.
Probab=44.13 E-value=28 Score=34.53 Aligned_cols=33 Identities=27% Similarity=0.445 Sum_probs=25.3
Q ss_pred eEEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEcccCc
Q 007802 331 TFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGL 375 (589)
Q Consensus 331 riv~~GAGsAg~GiA~ll~~~~~~~~G~s~eeA~~~i~~vD~~GL 375 (589)
.|+|+|||.||+..|-.|.+ .|+ ++.++|+...
T Consensus 2 dv~IiGaG~aGl~~A~~l~~-----~g~-------~v~vie~~~~ 34 (295)
T TIGR02032 2 DVVVVGAGPAGASAAYRLAD-----KGL-------RVLLLEKKSF 34 (295)
T ss_pred CEEEECCCHHHHHHHHHHHH-----CCC-------eEEEEeccCC
Confidence 48999999999999987743 364 5788887743
No 399
>COG2423 Predicted ornithine cyclodeaminase, mu-crystallin homolog [Amino acid transport and metabolism]
Probab=44.07 E-value=1.2e+02 Score=32.88 Aligned_cols=121 Identities=15% Similarity=0.171 Sum_probs=72.3
Q ss_pred HHHHHHHHHHHhCCCCCCceEEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEcccCcccCCcccCCchhchhh
Q 007802 312 VLAGILSALKLVGGTLADQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLIVSSRKESLQHFKKPW 391 (589)
Q Consensus 312 ~lAgll~Alr~~g~~l~d~riv~~GAGsAg~GiA~ll~~~~~~~~G~s~eeA~~~i~~vD~~GLv~~~r~~~l~~~k~~f 391 (589)
+.|+.++|=.+..++. .++.|+|+|.-+-.. ++++.+..++ ++|++.|++ .+....+-..+
T Consensus 115 aAasavAa~~LA~~da--~~laiIGaG~qA~~q----l~a~~~v~~~------~~I~i~~r~-------~~~~e~~a~~l 175 (330)
T COG2423 115 AAASAVAAKYLARKDA--STLAIIGAGAQARTQ----LEALKAVRDI------REIRVYSRD-------PEAAEAFAARL 175 (330)
T ss_pred HHHHHHHHHHhccCCC--cEEEEECCcHHHHHH----HHHHHhhCCc------cEEEEEcCC-------HHHHHHHHHHH
Confidence 3445566655555532 467899999865444 4444433343 667777664 11122222222
Q ss_pred hcc----cCCCCCHHHHHhccCCcEEEeecC-CCCCCCHHHHHHHHcCCCCcEEEec-CCCCCCCCCCHHHHhc
Q 007802 392 AHE----HAPIKSLLDAVKAIKPTMLMGTSG-VGKTFTKEVVEAMASFNEKPVIFAL-SNPTSQSECTAEEAYT 459 (589)
Q Consensus 392 a~~----~~~~~~L~e~V~~vkPtvLIG~S~-~~g~Fteevv~~Ma~~~erPIIFaL-SNPt~~~E~t~eda~~ 459 (589)
.+. -....|+.++|+. .|+++.+.. ....|..+.|+ +.--|=++ ||+-.+-|+.+|-..+
T Consensus 176 ~~~~~~~v~a~~s~~~av~~--aDiIvt~T~s~~Pil~~~~l~------~G~hI~aiGad~p~k~Eld~e~l~r 241 (330)
T COG2423 176 RKRGGEAVGAADSAEEAVEG--ADIVVTATPSTEPVLKAEWLK------PGTHINAIGADAPGKRELDPEVLAR 241 (330)
T ss_pred HhhcCccceeccCHHHHhhc--CCEEEEecCCCCCeecHhhcC------CCcEEEecCCCCcccccCCHHHHHh
Confidence 222 2345799999997 999999853 23488888887 23333333 5777889999976554
No 400
>TIGR01377 soxA_mon sarcosine oxidase, monomeric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=43.91 E-value=28 Score=36.43 Aligned_cols=33 Identities=30% Similarity=0.317 Sum_probs=26.2
Q ss_pred eEEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEcccCc
Q 007802 331 TFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGL 375 (589)
Q Consensus 331 riv~~GAGsAg~GiA~ll~~~~~~~~G~s~eeA~~~i~~vD~~GL 375 (589)
.|+|+|||.+|+.+|-.|.+ .| .++.++|+...
T Consensus 2 dvvIIGaGi~G~s~A~~La~-----~g-------~~V~l~e~~~~ 34 (380)
T TIGR01377 2 DVIVVGAGIMGCFAAYHLAK-----HG-------KKTLLLEQFDL 34 (380)
T ss_pred cEEEECCCHHHHHHHHHHHH-----CC-------CeEEEEeccCC
Confidence 58999999999999988754 25 35888888654
No 401
>PRK07067 sorbitol dehydrogenase; Provisional
Probab=43.69 E-value=28 Score=34.34 Aligned_cols=78 Identities=19% Similarity=0.184 Sum_probs=40.0
Q ss_pred CCCCceEEEeCc-ChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEcccCcccCCcccCCchh---ch-hhhcccCCCCC
Q 007802 326 TLADQTFLFLGA-GEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLIVSSRKESLQHF---KK-PWAHEHAPIKS 400 (589)
Q Consensus 326 ~l~d~riv~~GA-GsAg~GiA~ll~~~~~~~~G~s~eeA~~~i~~vD~~GLv~~~r~~~l~~~---k~-~fa~~~~~~~~ 400 (589)
++.+.+++|.|+ |.-|..||+.+ .+ +|. +++++|++. .+.+.+.+. +. .+.-|..+..+
T Consensus 3 ~l~~~~vlItGas~~iG~~ia~~l----~~-~G~-------~v~~~~r~~----~~~~~~~~~~~~~~~~~~~D~~~~~~ 66 (257)
T PRK07067 3 RLQGKVALLTGAASGIGEAVAERY----LA-EGA-------RVVIADIKP----ARARLAALEIGPAAIAVSLDVTRQDS 66 (257)
T ss_pred CCCCCEEEEeCCCchHHHHHHHHH----HH-cCC-------EEEEEcCCH----HHHHHHHHHhCCceEEEEccCCCHHH
Confidence 477889999997 33444444444 43 363 578887641 110001100 00 01112122235
Q ss_pred HHHHHhcc-----CCcEEEeecCC
Q 007802 401 LLDAVKAI-----KPTMLMGTSGV 419 (589)
Q Consensus 401 L~e~V~~v-----kPtvLIG~S~~ 419 (589)
+.++++.+ ++|+||=+.+.
T Consensus 67 ~~~~~~~~~~~~~~id~li~~ag~ 90 (257)
T PRK07067 67 IDRIVAAAVERFGGIDILFNNAAL 90 (257)
T ss_pred HHHHHHHHHHHcCCCCEEEECCCc
Confidence 66666654 68999977664
No 402
>cd01974 Nitrogenase_MoFe_beta Nitrogenase_MoFe_beta: Nitrogenase MoFe protein, beta subunit. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. The Molybdenum (Mo-) nitrogenase is the most widespread and best characterized of these systems. Mo-nitrogenase consists of the MoFe protein (component 1) and the Fe protein (component 2). MoFe is an alpha2beta2 tetramer. This group contains the beta subunit of the MoFe protein. Each alphabeta pair of MoFe contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe protein contains a single [4Fe-4S] cluster. Electrons are transferred from the [4Fe-4S] cluster of the Fe protein to the P-cluster of the MoFe and in turn to FeMoCo, the site of substrate reduction.
Probab=43.56 E-value=26 Score=38.67 Aligned_cols=104 Identities=11% Similarity=0.147 Sum_probs=58.1
Q ss_pred HHHHHHhCCCCCCceEEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEcccCcccCCcccCCchhchhhhcc--
Q 007802 317 LSALKLVGGTLADQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLIVSSRKESLQHFKKPWAHE-- 394 (589)
Q Consensus 317 l~Alr~~g~~l~d~riv~~GAGsAg~GiA~ll~~~~~~~~G~s~eeA~~~i~~vD~~GLv~~~r~~~l~~~k~~fa~~-- 394 (589)
+.++.-....|+++|+.++|-..-.+++++.|.+ .|+.. +. +++........+.-+.+..+
T Consensus 291 ~~~~~~~~~~l~gkrv~i~g~~~~~~~la~~L~e-----lGm~v------~~------~~~~~~~~~~~~~~~~~l~~~~ 353 (435)
T cd01974 291 VDAMTDSHQYLHGKKFALYGDPDFLIGLTSFLLE-----LGMEP------VH------VLTGNGGKRFEKEMQALLDASP 353 (435)
T ss_pred HHHHHHHHHhcCCCEEEEEcChHHHHHHHHHHHH-----CCCEE------EE------EEeCCCCHHHHHHHHHHHhhcC
Confidence 3334444457889999999988899999998874 38732 11 11111111011111111111
Q ss_pred ---------cCCCCCHHHHHhccCCcEEEeecCCCCCCCHHHHHHHHcCCCCcEEEecCCCC
Q 007802 395 ---------HAPIKSLLDAVKAIKPTMLMGTSGVGKTFTKEVVEAMASFNEKPVIFALSNPT 447 (589)
Q Consensus 395 ---------~~~~~~L~e~V~~vkPtvLIG~S~~~g~Fteevv~~Ma~~~erPIIFaLSNPt 447 (589)
..+...+.+.++..+||++||-|. . +.+|+...-|.| ..+.|.
T Consensus 354 ~~~~~~v~~~~d~~e~~~~i~~~~pDliiG~s~-----~----~~~a~~~gip~v-~~~~P~ 405 (435)
T cd01974 354 YGAGAKVYPGKDLWHLRSLLFTEPVDLLIGNTY-----G----KYIARDTDIPLV-RFGFPI 405 (435)
T ss_pred CCCCcEEEECCCHHHHHHHHhhcCCCEEEECcc-----H----HHHHHHhCCCEE-EeeCCc
Confidence 122235788889999999999764 1 234433356653 556665
No 403
>PRK06841 short chain dehydrogenase; Provisional
Probab=43.42 E-value=45 Score=32.67 Aligned_cols=36 Identities=31% Similarity=0.452 Sum_probs=23.8
Q ss_pred CCCCceEEEeCc-ChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEccc
Q 007802 326 TLADQTFLFLGA-GEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSK 373 (589)
Q Consensus 326 ~l~d~riv~~GA-GsAg~GiA~ll~~~~~~~~G~s~eeA~~~i~~vD~~ 373 (589)
++++.+++|.|| |..|..+|+.+. + .|. ++++++++
T Consensus 12 ~~~~k~vlItGas~~IG~~la~~l~----~-~G~-------~Vi~~~r~ 48 (255)
T PRK06841 12 DLSGKVAVVTGGASGIGHAIAELFA----A-KGA-------RVALLDRS 48 (255)
T ss_pred CCCCCEEEEECCCChHHHHHHHHHH----H-CCC-------EEEEEeCC
Confidence 577889999997 545555555543 3 363 57777765
No 404
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=43.16 E-value=44 Score=35.74 Aligned_cols=99 Identities=17% Similarity=0.162 Sum_probs=50.0
Q ss_pred cCCCchHHHHHHHHHHHHHHhCCCCCCceEEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEcccCcccCCccc
Q 007802 303 DDIQGTASVVLAGILSALKLVGGTLADQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLIVSSRKE 382 (589)
Q Consensus 303 DDiQGTaaV~lAgll~Alr~~g~~l~d~riv~~GAGsAg~GiA~ll~~~~~~~~G~s~eeA~~~i~~vD~~GLv~~~r~~ 382 (589)
|+..+.-+=-+|.-+.+.........+.+++|+|+|+.|+..+.+.. ..|. ++|+++|.. .+|
T Consensus 143 ~~~~aal~epla~~~~~~a~~~~~~~~~~V~V~GaGpIGLla~~~a~-----~~Ga------~~Viv~d~~----~~R-- 205 (350)
T COG1063 143 DEEAAALTEPLATAYHGHAERAAVRPGGTVVVVGAGPIGLLAIALAK-----LLGA------SVVIVVDRS----PER-- 205 (350)
T ss_pred ChhhhhhcChhhhhhhhhhhccCCCCCCEEEEECCCHHHHHHHHHHH-----HcCC------ceEEEeCCC----HHH--
Confidence 33444444444444444222232233339999999999987633222 1364 689988763 222
Q ss_pred CCchhchhhhcc--cCCCC-CHHHHH----hccCCcEEEeecCC
Q 007802 383 SLQHFKKPWAHE--HAPIK-SLLDAV----KAIKPTMLMGTSGV 419 (589)
Q Consensus 383 ~l~~~k~~fa~~--~~~~~-~L~e~V----~~vkPtvLIG~S~~ 419 (589)
|.-.++.++-+ ..... ...+.+ .....|+.|=+|+.
T Consensus 206 -l~~A~~~~g~~~~~~~~~~~~~~~~~~~t~g~g~D~vie~~G~ 248 (350)
T COG1063 206 -LELAKEAGGADVVVNPSEDDAGAEILELTGGRGADVVIEAVGS 248 (350)
T ss_pred -HHHHHHhCCCeEeecCccccHHHHHHHHhCCCCCCEEEECCCC
Confidence 33223222221 01111 222333 22368999999983
No 405
>PRK10262 thioredoxin reductase; Provisional
Probab=43.07 E-value=22 Score=36.86 Aligned_cols=24 Identities=33% Similarity=0.403 Sum_probs=20.5
Q ss_pred CCCceEEEeCcChHHHHHHHHHHH
Q 007802 327 LADQTFLFLGAGEAGTGIAELIAL 350 (589)
Q Consensus 327 l~d~riv~~GAGsAg~GiA~ll~~ 350 (589)
-+..+|||+|+|.||+..|..+..
T Consensus 4 ~~~~~vvIIGgGpaGl~aA~~l~~ 27 (321)
T PRK10262 4 TKHSKLLILGSGPAGYTAAVYAAR 27 (321)
T ss_pred CCcCCEEEECCCHHHHHHHHHHHH
Confidence 356789999999999999987755
No 406
>PF13407 Peripla_BP_4: Periplasmic binding protein domain; PDB: 3BRS_B 3GBP_A 3GA5_A 1GCG_A 1GCA_A 3H75_A 3D02_A 3L49_B 3EJW_B 3T95_A ....
Probab=42.97 E-value=85 Score=30.61 Aligned_cols=144 Identities=17% Similarity=0.215 Sum_probs=86.8
Q ss_pred hhcCCCcccccccccccHHHHHhcCCCCCeeEEEEecC--cccccCCCCCCC--cccchhhhHHHHhhhcCCCCCCeeeE
Q 007802 151 IFRRPQGLYISLKEKGKILEVLKNWPERNIQVIVVTDG--ERILGLGDLGCQ--GMGIPVGKLSLYTALGGLRPSACLPI 226 (589)
Q Consensus 151 i~r~p~Glyls~~d~g~i~~il~nwp~~~v~iiVVTDG--~rILGLGDlG~~--GmgI~iGKl~LY~a~gGI~P~~~lPI 226 (589)
+-+++.|+-++..|.....+.++.+...+|.|+.+-.. ..-..+--.|.+ .+|-..|+..+-....+ ..|
T Consensus 52 i~~~~d~Iiv~~~~~~~~~~~l~~~~~~gIpvv~~d~~~~~~~~~~~~v~~d~~~~G~~~a~~l~~~~~~~------~~v 125 (257)
T PF13407_consen 52 ISQGVDGIIVSPVDPDSLAPFLEKAKAAGIPVVTVDSDEAPDSPRAAYVGTDNYEAGKLAAEYLAEKLGAK------GKV 125 (257)
T ss_dssp HHTTESEEEEESSSTTTTHHHHHHHHHTTSEEEEESSTHHTTSTSSEEEEE-HHHHHHHHHHHHHHHHTTT------EEE
T ss_pred HHhcCCEEEecCCCHHHHHHHHHHHhhcCceEEEEeccccccccceeeeeccHHHHHHHHHHHHHHHhccC------ceE
Confidence 45679999999999988889998888888988887555 222222233333 36677777777776655 445
Q ss_pred EeecCCCccccccCcccccccccCCChhhHHHHHHHHHHHHHHhcCCce-eeE---eecCCCccHHHHHHHHcCCC---c
Q 007802 227 TIDVGTNNEQLLNDEFYIGLRQKRATGQEYAELLQEFMTAVKQNYGEKV-LIQ---FEDFANHNAFELLSKYSSSH---L 299 (589)
Q Consensus 227 ~LDvGTnn~~LL~Dp~YlG~r~~R~~g~~y~~fidefv~av~~~fGp~~-lIq---~EDf~~~~Af~iL~ryr~~~---~ 299 (589)
++=.|..+ .....+.++-|.+++++ ++ ++ ++. +.++....+.+.++++-... +
T Consensus 126 ~~~~~~~~------------------~~~~~~r~~g~~~~l~~-~~-~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~ 185 (257)
T PF13407_consen 126 LILSGSPG------------------NPNTQERLEGFRDALKE-YP-GVEIVDEYEYTDWDPEDARQAIENLLQANPVDA 185 (257)
T ss_dssp EEEESSTT------------------SHHHHHHHHHHHHHHHH-CT-TEEEEEEEEECTTSHHHHHHHHHHHHHHTTEEE
T ss_pred EeccCCCC------------------chHHHHHHHHHHHHHhh-cc-eeeeeeeeeccCCCHHHHHHHHHHhhhcCCceE
Confidence 54444211 12233456778888877 63 43 222 23677777776555553211 2
Q ss_pred eeccCCCchHHHHHHHHHHHHHHhCC
Q 007802 300 VFNDDIQGTASVVLAGILSALKLVGG 325 (589)
Q Consensus 300 ~FnDDiQGTaaV~lAgll~Alr~~g~ 325 (589)
+|. +....+-|++.|++-.|+
T Consensus 186 i~~-----~~~~~~~g~~~al~~~g~ 206 (257)
T PF13407_consen 186 IIA-----CNDGMALGAAQALQQAGR 206 (257)
T ss_dssp EEE-----SSHHHHHHHHHHHHHTTC
T ss_pred EEe-----CCChHHHHHHHHHHHcCC
Confidence 222 222334477888888777
No 407
>cd01833 XynB_like SGNH_hydrolase subfamily, similar to Ruminococcus flavefaciens XynB. Most likely a secreted hydrolase with xylanase activity. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=42.92 E-value=1.2e+02 Score=27.56 Aligned_cols=68 Identities=16% Similarity=0.183 Sum_probs=45.1
Q ss_pred CCCCcccchhhhHHHHhhhcCCCCCCeeeEEeecCCCccccccCcccccccccCCChhhHHHHHHHHHHHHHHhcCCcee
Q 007802 197 LGCQGMGIPVGKLSLYTALGGLRPSACLPITIDVGTNNEQLLNDEFYIGLRQKRATGQEYAELLQEFMTAVKQNYGEKVL 276 (589)
Q Consensus 197 lG~~GmgI~iGKl~LY~a~gGI~P~~~lPI~LDvGTnn~~LL~Dp~YlG~r~~R~~g~~y~~fidefv~av~~~fGp~~l 276 (589)
.|.+|-...--+..+-......+|+. |.|-+||| |.++ +.+-++|.+-+.+|++.++..+ |++.
T Consensus 18 ~g~~G~~~~~~~~~~~~~~~~~~pd~---vvi~~G~N------D~~~------~~~~~~~~~~~~~~i~~i~~~~-p~~~ 81 (157)
T cd01833 18 EGHSGYLIDQIAAAAADWVLAAKPDV---VLLHLGTN------DLVL------NRDPDTAPDRLRALIDQMRAAN-PDVK 81 (157)
T ss_pred CCCCCccHHHHHHHhhhccccCCCCE---EEEeccCc------cccc------CCCHHHHHHHHHHHHHHHHHhC-CCeE
Confidence 44455455544444444555567655 56888997 3332 2467889999999999999988 8776
Q ss_pred eEee
Q 007802 277 IQFE 280 (589)
Q Consensus 277 Iq~E 280 (589)
|-|-
T Consensus 82 ii~~ 85 (157)
T cd01833 82 IIVA 85 (157)
T ss_pred EEEE
Confidence 6553
No 408
>TIGR01282 nifD nitrogenase molybdenum-iron protein alpha chain. Nitrogenase consists of alpha (NifD) and beta (NifK) subunits of the molybdenum-iron protein and an ATP-binding iron-sulfur protein (NifH). This model describes a large clade of NifD proteins, but excludes a lineage that contains putative NifD and NifD homologs from species with vanadium-dependent nitrogenases.
Probab=42.87 E-value=29 Score=39.00 Aligned_cols=137 Identities=14% Similarity=0.188 Sum_probs=67.2
Q ss_pred HHHHHHHHHhcC-CceeeEeecCCCccHHHHHHHHcCCCceeccCCCchHHHHH----HHHHHHHHHhCCCCCCceEEEe
Q 007802 261 QEFMTAVKQNYG-EKVLIQFEDFANHNAFELLSKYSSSHLVFNDDIQGTASVVL----AGILSALKLVGGTLADQTFLFL 335 (589)
Q Consensus 261 defv~av~~~fG-p~~lIq~EDf~~~~Af~iL~ryr~~~~~FnDDiQGTaaV~l----Agll~Alr~~g~~l~d~riv~~ 335 (589)
....+.++++|| |...+.+ ++-.+.-+.|++... .|++++.-.+--.+ +-+...+......|++.|++++
T Consensus 267 ~~~A~~Le~~fGiP~~~~~~--~Gi~~T~~~Lr~ia~---~~g~~i~~~~e~~I~~e~~~~~~~ld~~~~~L~GKrv~i~ 341 (466)
T TIGR01282 267 NYISRHMEEKYGIPWMEYNF--FGPTKIAESLRKIAE---FFDDEIKEKAEEVIAKYQPAVDAVIAKYRPRLEGKTVMLY 341 (466)
T ss_pred HHHHHHHHHHhCCceEeCCC--CCHHHHHHHHHHHHH---HHCchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEEE
Confidence 344556677776 3222233 555555555555432 23434332221111 1233334446678999999999
Q ss_pred CcChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEcccCcccCCcccCCchhchhhhc-----ccCCCCCHHHHHhccCC
Q 007802 336 GAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLIVSSRKESLQHFKKPWAH-----EHAPIKSLLDAVKAIKP 410 (589)
Q Consensus 336 GAGsAg~GiA~ll~~~~~~~~G~s~eeA~~~i~~vD~~GLv~~~r~~~l~~~k~~fa~-----~~~~~~~L~e~V~~vkP 410 (589)
|.|+-...++.++ ++.|+.. ..+-. .....++.....+.... +..+...|++.++..||
T Consensus 342 ~g~~~~~~~~~~l-----~ELGmev-------v~~g~----~~~~~~~~~~~~~~~~~~~~i~~~~d~~el~~~i~~~~p 405 (466)
T TIGR01282 342 VGGLRPRHVIGAF-----EDLGMEV-------IGTGY----EFAHNDDYERTTKYMKDGTLIYDDVTHYEFEEFVEKLKP 405 (466)
T ss_pred CCCCcHHHHHHHH-----HHCCCEE-------EEEee----ecCCHHHHHHHHHhcCCCeEEeeCCCHHHHHHHHHHhCC
Confidence 9887666666643 2358732 11100 00000111111111100 11122358888999999
Q ss_pred cEEEeecC
Q 007802 411 TMLMGTSG 418 (589)
Q Consensus 411 tvLIG~S~ 418 (589)
|+|||-|-
T Consensus 406 Dl~ig~~~ 413 (466)
T TIGR01282 406 DLVGSGIK 413 (466)
T ss_pred CEEEecCC
Confidence 99998664
No 409
>PRK12491 pyrroline-5-carboxylate reductase; Reviewed
Probab=42.86 E-value=57 Score=33.91 Aligned_cols=36 Identities=17% Similarity=0.253 Sum_probs=26.6
Q ss_pred ceEEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEccc
Q 007802 330 QTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSK 373 (589)
Q Consensus 330 ~riv~~GAGsAg~GiA~ll~~~~~~~~G~s~eeA~~~i~~vD~~ 373 (589)
.||.|+|+|..|-.+|.-|++ .|.. ...+|+.+|++
T Consensus 3 ~~IgfIG~G~MG~aia~~L~~-----~g~~---~~~~I~v~~r~ 38 (272)
T PRK12491 3 KQIGFIGCGNMGIAMIGGMIN-----KNIV---SPDQIICSDLN 38 (272)
T ss_pred CeEEEECccHHHHHHHHHHHH-----CCCC---CCceEEEECCC
Confidence 379999999999999988764 2531 23568888863
No 410
>PRK09987 dTDP-4-dehydrorhamnose reductase; Provisional
Probab=42.81 E-value=86 Score=32.30 Aligned_cols=86 Identities=13% Similarity=0.258 Sum_probs=51.4
Q ss_pred eEEEeCc-ChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEcccCcccCCcccCCchhchhhhcccCCCCCHHHHHhccC
Q 007802 331 TFLFLGA-GEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLIVSSRKESLQHFKKPWAHEHAPIKSLLDAVKAIK 409 (589)
Q Consensus 331 riv~~GA-GsAg~GiA~ll~~~~~~~~G~s~eeA~~~i~~vD~~GLv~~~r~~~l~~~k~~fa~~~~~~~~L~e~V~~vk 409 (589)
||+|.|| |-.|-.+++.|.+ .| +++.+|+..-. +.-+-.+...+.++++..+
T Consensus 2 ~iLVtG~~GfiGs~l~~~L~~-----~g--------~V~~~~~~~~~--------------~~~Dl~d~~~~~~~~~~~~ 54 (299)
T PRK09987 2 NILLFGKTGQVGWELQRALAP-----LG--------NLIALDVHSTD--------------YCGDFSNPEGVAETVRKIR 54 (299)
T ss_pred eEEEECCCCHHHHHHHHHhhc-----cC--------CEEEecccccc--------------ccCCCCCHHHHHHHHHhcC
Confidence 7999997 9999888776643 13 36666654110 0001112235777888888
Q ss_pred CcEEEeecCCCCCC----------------CHHHHHHHHcCCCCcEEEecC
Q 007802 410 PTMLMGTSGVGKTF----------------TKEVVEAMASFNEKPVIFALS 444 (589)
Q Consensus 410 PtvLIG~S~~~g~F----------------teevv~~Ma~~~erPIIFaLS 444 (589)
||++|=+.+..+.- |..+++.+.++. .++||.=|
T Consensus 55 ~D~Vih~Aa~~~~~~~~~~~~~~~~~N~~~~~~l~~aa~~~g-~~~v~~Ss 104 (299)
T PRK09987 55 PDVIVNAAAHTAVDKAESEPEFAQLLNATSVEAIAKAANEVG-AWVVHYST 104 (299)
T ss_pred CCEEEECCccCCcchhhcCHHHHHHHHHHHHHHHHHHHHHcC-CeEEEEcc
Confidence 99999776543221 334566665554 46887544
No 411
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=42.79 E-value=44 Score=37.08 Aligned_cols=85 Identities=15% Similarity=0.267 Sum_probs=55.5
Q ss_pred ceEEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEcccCcccCCcccCCchh---chhhhc-ccCCCCCHHHHH
Q 007802 330 QTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLIVSSRKESLQHF---KKPWAH-EHAPIKSLLDAV 405 (589)
Q Consensus 330 ~riv~~GAGsAg~GiA~ll~~~~~~~~G~s~eeA~~~i~~vD~~GLv~~~r~~~l~~~---k~~fa~-~~~~~~~L~e~V 405 (589)
.+||++|||-.|..+|..|++- |- .+|++.|+. .+..+.+... +.+... |..+.+.|.++|
T Consensus 2 ~~ilviGaG~Vg~~va~~la~~-----~d------~~V~iAdRs----~~~~~~i~~~~~~~v~~~~vD~~d~~al~~li 66 (389)
T COG1748 2 MKILVIGAGGVGSVVAHKLAQN-----GD------GEVTIADRS----KEKCARIAELIGGKVEALQVDAADVDALVALI 66 (389)
T ss_pred CcEEEECCchhHHHHHHHHHhC-----CC------ceEEEEeCC----HHHHHHHHhhccccceeEEecccChHHHHHHH
Confidence 4799999999999999988652 32 579988874 1111111111 222222 334456899999
Q ss_pred hccCCcEEEeecCCCCCCCHHHHHHHHc
Q 007802 406 KAIKPTMLMGTSGVGKTFTKEVVEAMAS 433 (589)
Q Consensus 406 ~~vkPtvLIG~S~~~g~Fteevv~~Ma~ 433 (589)
+. .++.|-+-. +-++..++++-.+
T Consensus 67 ~~--~d~VIn~~p--~~~~~~i~ka~i~ 90 (389)
T COG1748 67 KD--FDLVINAAP--PFVDLTILKACIK 90 (389)
T ss_pred hc--CCEEEEeCC--chhhHHHHHHHHH
Confidence 97 588886654 4578888877665
No 412
>TIGR00292 thiazole biosynthesis enzyme. This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.
Probab=42.57 E-value=29 Score=35.70 Aligned_cols=37 Identities=22% Similarity=0.340 Sum_probs=28.6
Q ss_pred CCceEEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEcccCcc
Q 007802 328 ADQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLI 376 (589)
Q Consensus 328 ~d~riv~~GAGsAg~GiA~ll~~~~~~~~G~s~eeA~~~i~~vD~~GLv 376 (589)
.+-.|+|+|||.||+..|..+.+ .| .++.+++++.-+
T Consensus 20 ~~~DVvIVGgGpAGL~aA~~la~-----~G-------~~V~vlEk~~~~ 56 (254)
T TIGR00292 20 AESDVIIVGAGPSGLTAAYYLAK-----NG-------LKVCVLERSLAF 56 (254)
T ss_pred cCCCEEEECCCHHHHHHHHHHHH-----CC-------CcEEEEecCCCC
Confidence 46789999999999999987754 35 468888887543
No 413
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=42.43 E-value=32 Score=38.52 Aligned_cols=36 Identities=17% Similarity=0.307 Sum_probs=29.3
Q ss_pred CCCceEEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEcccC
Q 007802 327 LADQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKG 374 (589)
Q Consensus 327 l~d~riv~~GAGsAg~GiA~ll~~~~~~~~G~s~eeA~~~i~~vD~~G 374 (589)
+++++|||+|+|..|+-||..|... .++++++-+.+
T Consensus 202 ~~gk~VvVVG~G~Sg~diA~~L~~~------------a~~V~l~~r~~ 237 (461)
T PLN02172 202 FKNEVVVVIGNFASGADISRDIAKV------------AKEVHIASRAS 237 (461)
T ss_pred cCCCEEEEECCCcCHHHHHHHHHHh------------CCeEEEEEeec
Confidence 6899999999999999999988653 26788776654
No 414
>PLN02463 lycopene beta cyclase
Probab=42.30 E-value=28 Score=38.79 Aligned_cols=32 Identities=19% Similarity=0.417 Sum_probs=25.3
Q ss_pred ceEEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEccc
Q 007802 330 QTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSK 373 (589)
Q Consensus 330 ~riv~~GAGsAg~GiA~ll~~~~~~~~G~s~eeA~~~i~~vD~~ 373 (589)
-.|+|+|||.||+.+|..+.+ .|+ ++.++|+.
T Consensus 29 ~DVvIVGaGpAGLalA~~La~-----~Gl-------~V~liE~~ 60 (447)
T PLN02463 29 VDLVVVGGGPAGLAVAQQVSE-----AGL-------SVCCIDPS 60 (447)
T ss_pred ceEEEECCCHHHHHHHHHHHH-----CCC-------eEEEeccC
Confidence 478999999999999987754 364 57788875
No 415
>cd05007 SIS_Etherase N-acetylmuramic acid 6-phosphate etherase. Members of this family contain the SIS (Sugar ISomerase) domain. The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. The bacterial cell wall sugar N-acetylmuramic acid carries a unique D-lactyl ether substituent at the C3 position. The etherase catalyzes the cleavage of the lactyl ether bond of N-acetylmuramic acid 6-phosphate.
Probab=42.18 E-value=1.3e+02 Score=31.18 Aligned_cols=38 Identities=21% Similarity=0.275 Sum_probs=27.6
Q ss_pred cCCcEEEeecCCCCCCCHHHHHHHH--cCCCCcEEEecCCCC
Q 007802 408 IKPTMLMGTSGVGKTFTKEVVEAMA--SFNEKPVIFALSNPT 447 (589)
Q Consensus 408 vkPtvLIG~S~~~g~Fteevv~~Ma--~~~erPIIFaLSNPt 447 (589)
-+-|++||+|..|. |+++++.+. +...-|+|.=-+||.
T Consensus 117 ~~~DvvI~IS~SG~--T~~vi~al~~Ak~~Ga~~I~It~~~~ 156 (257)
T cd05007 117 TERDVVIGIAASGR--TPYVLGALRYARARGALTIGIACNPG 156 (257)
T ss_pred CCCCEEEEEeCCCC--CHHHHHHHHHHHHCCCeEEEEECCCC
Confidence 36799999999775 888888775 333457766666676
No 416
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=42.13 E-value=30 Score=38.00 Aligned_cols=30 Identities=20% Similarity=0.258 Sum_probs=24.9
Q ss_pred EEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEccc
Q 007802 332 FLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSK 373 (589)
Q Consensus 332 iv~~GAGsAg~GiA~ll~~~~~~~~G~s~eeA~~~i~~vD~~ 373 (589)
+||+|||+||+..|..+.+ .| +++.++|++
T Consensus 3 vvVIGaGpaG~~aA~~aa~-----~g-------~~v~lie~~ 32 (463)
T TIGR02053 3 LVIIGSGAAAFAAAIKAAE-----LG-------ASVAMVERG 32 (463)
T ss_pred EEEECCCHHHHHHHHHHHH-----CC-------CeEEEEeCC
Confidence 7999999999999987765 26 478899975
No 417
>PF01946 Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K.
Probab=42.08 E-value=37 Score=35.15 Aligned_cols=35 Identities=26% Similarity=0.304 Sum_probs=25.1
Q ss_pred CCceEEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEcccC
Q 007802 328 ADQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKG 374 (589)
Q Consensus 328 ~d~riv~~GAGsAg~GiA~ll~~~~~~~~G~s~eeA~~~i~~vD~~G 374 (589)
.+--++|+|||+||+..|..|.+. |+ ++.+++++=
T Consensus 16 ~~~DV~IVGaGpaGl~aA~~La~~-----g~-------kV~v~E~~~ 50 (230)
T PF01946_consen 16 LEYDVAIVGAGPAGLTAAYYLAKA-----GL-------KVAVIERKL 50 (230)
T ss_dssp TEESEEEE--SHHHHHHHHHHHHH-----TS--------EEEEESSS
T ss_pred ccCCEEEECCChhHHHHHHHHHHC-----CC-------eEEEEecCC
Confidence 345689999999999999888664 64 578888763
No 418
>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional
Probab=42.04 E-value=29 Score=36.60 Aligned_cols=32 Identities=19% Similarity=0.362 Sum_probs=25.0
Q ss_pred ceEEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEccc
Q 007802 330 QTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSK 373 (589)
Q Consensus 330 ~riv~~GAGsAg~GiA~ll~~~~~~~~G~s~eeA~~~i~~vD~~ 373 (589)
..|+|+|||.||+..|-.|.+ .|+ ++.++|++
T Consensus 6 ~dv~IvGgG~aGl~~A~~L~~-----~G~-------~v~v~E~~ 37 (388)
T PRK07608 6 FDVVVVGGGLVGASLALALAQ-----SGL-------RVALLAPR 37 (388)
T ss_pred CCEEEECcCHHHHHHHHHHHh-----CCC-------eEEEEecC
Confidence 469999999999999977754 364 57778765
No 419
>PRK04690 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=41.94 E-value=32 Score=38.32 Aligned_cols=24 Identities=17% Similarity=0.275 Sum_probs=22.0
Q ss_pred CCCceEEEeCcChHHHHHHHHHHH
Q 007802 327 LADQTFLFLGAGEAGTGIAELIAL 350 (589)
Q Consensus 327 l~d~riv~~GAGsAg~GiA~ll~~ 350 (589)
++++||+|+|.|..|.++|++|..
T Consensus 6 ~~~~~v~v~G~G~sG~~~~~~l~~ 29 (468)
T PRK04690 6 LEGRRVALWGWGREGRAAYRALRA 29 (468)
T ss_pred cCCCEEEEEccchhhHHHHHHHHH
Confidence 568899999999999999999875
No 420
>PRK13301 putative L-aspartate dehydrogenase; Provisional
Probab=41.88 E-value=41 Score=35.55 Aligned_cols=117 Identities=14% Similarity=0.187 Sum_probs=65.5
Q ss_pred ceEEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEcccCcccCCcccCCchhchhhhcccCCCCCHHHHHhccC
Q 007802 330 QTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLIVSSRKESLQHFKKPWAHEHAPIKSLLDAVKAIK 409 (589)
Q Consensus 330 ~riv~~GAGsAg~GiA~ll~~~~~~~~G~s~eeA~~~i~~vD~~GLv~~~r~~~l~~~k~~fa~~~~~~~~L~e~V~~vk 409 (589)
+||.++|-|+.|--|++.|... +. +..+-.++.|+.. + ..+.++...+.+.+|.|.+. -+
T Consensus 3 ~rvgiIG~GaIG~~va~~l~~~-----~~---~~~~l~~V~~~~~----~-------~~~~~~~~~~~~~~l~~ll~-~~ 62 (267)
T PRK13301 3 HRIAFIGLGAIASDVAAGLLAD-----AA---QPCQLAALTRNAA----D-------LPPALAGRVALLDGLPGLLA-WR 62 (267)
T ss_pred eEEEEECccHHHHHHHHHHhcC-----CC---CceEEEEEecCCH----H-------HHHHhhccCcccCCHHHHhh-cC
Confidence 6999999999999999987442 11 0123345555531 1 12223333344578888653 37
Q ss_pred CcEEEeecCCCCCCCHHHHHHHHcCCCCcEEE---ecCCCCCCCCCCHHHHhccccCcEEEeeC
Q 007802 410 PTMLMGTSGVGKTFTKEVVEAMASFNEKPVIF---ALSNPTSQSECTAEEAYTWSKGQAIFASG 470 (589)
Q Consensus 410 PtvLIG~S~~~g~Fteevv~~Ma~~~erPIIF---aLSNPt~~~E~t~eda~~wT~GraifAsG 470 (589)
||+++=+.++. ++.+-..+.+.+.. .=+|+ ||+++. =+-.-.++-+-+.++..+.||
T Consensus 63 ~DlVVE~A~~~-av~e~~~~iL~~g~-dlvv~SvGALaD~~--~~~~l~~~A~~~g~~i~ipSG 122 (267)
T PRK13301 63 PDLVVEAAGQQ-AIAEHAEGCLTAGL-DMIICSAGALADDA--LRARLIAAAEAGGARIRVPAG 122 (267)
T ss_pred CCEEEECCCHH-HHHHHHHHHHhcCC-CEEEEChhHhcCHH--HHHHHHHHHHhCCCEEEEeCh
Confidence 99999988854 55555555444322 22222 244433 122223344445678888887
No 421
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=41.59 E-value=32 Score=39.89 Aligned_cols=33 Identities=21% Similarity=0.302 Sum_probs=27.5
Q ss_pred ceEEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEcccC
Q 007802 330 QTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKG 374 (589)
Q Consensus 330 ~riv~~GAGsAg~GiA~ll~~~~~~~~G~s~eeA~~~i~~vD~~G 374 (589)
..|+|+|||.+|+.+|-.|.+ .|. ++.++|++.
T Consensus 261 ~dVvIIGaGIaG~s~A~~La~-----~G~-------~V~VlE~~~ 293 (662)
T PRK01747 261 RDAAIIGGGIAGAALALALAR-----RGW-------QVTLYEADE 293 (662)
T ss_pred CCEEEECccHHHHHHHHHHHH-----CCC-------eEEEEecCC
Confidence 589999999999999998865 363 699999874
No 422
>PRK00048 dihydrodipicolinate reductase; Provisional
Probab=41.47 E-value=1.6e+02 Score=30.33 Aligned_cols=88 Identities=19% Similarity=0.191 Sum_probs=53.5
Q ss_pred ceEEEeCc-ChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEcccCcccCCcccCCchhchhhhcccCCCCCHHHHHhcc
Q 007802 330 QTFLFLGA-GEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLIVSSRKESLQHFKKPWAHEHAPIKSLLDAVKAI 408 (589)
Q Consensus 330 ~riv~~GA-GsAg~GiA~ll~~~~~~~~G~s~eeA~~~i~~vD~~GLv~~~r~~~l~~~k~~fa~~~~~~~~L~e~V~~v 408 (589)
-||.++|+ |..|-.+++.+... .++ +=..++|++. ++.... ..+ .-....++.++++
T Consensus 2 mkV~IiG~~G~mG~~i~~~l~~~----~~~------elvav~d~~~----~~~~~~----~~~--~i~~~~dl~~ll~-- 59 (257)
T PRK00048 2 IKVAVAGASGRMGRELIEAVEAA----EDL------ELVAAVDRPG----SPLVGQ----GAL--GVAITDDLEAVLA-- 59 (257)
T ss_pred cEEEEECCCCHHHHHHHHHHHhC----CCC------EEEEEEecCC----cccccc----CCC--CccccCCHHHhcc--
Confidence 38999999 99998888776431 232 3455677652 111101 111 1122367888886
Q ss_pred CCcEEEeecCCCCCCCHHHHHHHHcCCCCcEEEe
Q 007802 409 KPTMLMGTSGVGKTFTKEVVEAMASFNEKPVIFA 442 (589)
Q Consensus 409 kPtvLIG~S~~~g~Fteevv~~Ma~~~erPIIFa 442 (589)
+||++|=+|... ...++++...++ ..|+|..
T Consensus 60 ~~DvVid~t~p~--~~~~~~~~al~~-G~~vvig 90 (257)
T PRK00048 60 DADVLIDFTTPE--ATLENLEFALEH-GKPLVIG 90 (257)
T ss_pred CCCEEEECCCHH--HHHHHHHHHHHc-CCCEEEE
Confidence 599999888533 346777666654 5777755
No 423
>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype.
Probab=41.44 E-value=27 Score=36.71 Aligned_cols=19 Identities=21% Similarity=0.445 Sum_probs=17.3
Q ss_pred EEEeCcChHHHHHHHHHHH
Q 007802 332 FLFLGAGEAGTGIAELIAL 350 (589)
Q Consensus 332 iv~~GAGsAg~GiA~ll~~ 350 (589)
|+|+|||.||+..|-.|.+
T Consensus 2 v~IvGaG~aGl~~A~~L~~ 20 (382)
T TIGR01984 2 VIIVGGGLVGLSLALALSR 20 (382)
T ss_pred EEEECccHHHHHHHHHHhc
Confidence 7999999999999998865
No 424
>PRK10157 putative oxidoreductase FixC; Provisional
Probab=41.43 E-value=30 Score=37.93 Aligned_cols=21 Identities=33% Similarity=0.387 Sum_probs=18.2
Q ss_pred ceEEEeCcChHHHHHHHHHHH
Q 007802 330 QTFLFLGAGEAGTGIAELIAL 350 (589)
Q Consensus 330 ~riv~~GAGsAg~GiA~ll~~ 350 (589)
-.|+|+|||.||+..|-.+.+
T Consensus 6 ~DViIVGaGpAG~~aA~~La~ 26 (428)
T PRK10157 6 FDAIIVGAGLAGSVAALVLAR 26 (428)
T ss_pred CcEEEECcCHHHHHHHHHHHh
Confidence 468999999999999988754
No 425
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=41.40 E-value=32 Score=37.58 Aligned_cols=31 Identities=26% Similarity=0.283 Sum_probs=25.5
Q ss_pred eEEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEccc
Q 007802 331 TFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSK 373 (589)
Q Consensus 331 riv~~GAGsAg~GiA~ll~~~~~~~~G~s~eeA~~~i~~vD~~ 373 (589)
.|||+|+|.||+..|..+.. .| .++.++|+.
T Consensus 3 DvvVIG~G~aGl~aA~~la~-----~G-------~~v~lie~~ 33 (461)
T TIGR01350 3 DVVVIGGGPGGYVAAIRAAQ-----LG-------LKVALVEKE 33 (461)
T ss_pred cEEEECCCHHHHHHHHHHHh-----CC-------CeEEEEecC
Confidence 58999999999999988864 25 468899983
No 426
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=41.26 E-value=30 Score=37.75 Aligned_cols=32 Identities=22% Similarity=0.361 Sum_probs=26.4
Q ss_pred ceEEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEccc
Q 007802 330 QTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSK 373 (589)
Q Consensus 330 ~riv~~GAGsAg~GiA~ll~~~~~~~~G~s~eeA~~~i~~vD~~ 373 (589)
-.+||+|+|+||+..|..+.+. | .++.++|++
T Consensus 4 yDvvVIGgGpaGl~aA~~la~~-----g-------~~V~lie~~ 35 (441)
T PRK08010 4 YQAVIIGFGKAGKTLAVTLAKA-----G-------WRVALIEQS 35 (441)
T ss_pred CCEEEECCCHhHHHHHHHHHHC-----C-------CeEEEEcCC
Confidence 4689999999999999988652 5 468999975
No 427
>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.
Probab=41.18 E-value=35 Score=38.25 Aligned_cols=34 Identities=15% Similarity=0.316 Sum_probs=27.4
Q ss_pred CCceEEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEccc
Q 007802 328 ADQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSK 373 (589)
Q Consensus 328 ~d~riv~~GAGsAg~GiA~ll~~~~~~~~G~s~eeA~~~i~~vD~~ 373 (589)
.+.+|+|+|+|.||+..|..|.. .|. +++++|+.
T Consensus 142 ~~~~V~IIGaG~aGl~aA~~L~~-----~g~-------~V~v~e~~ 175 (485)
T TIGR01317 142 TGKKVAVVGSGPAGLAAADQLNR-----AGH-------TVTVFERE 175 (485)
T ss_pred CCCEEEEECCcHHHHHHHHHHHH-----cCC-------eEEEEecC
Confidence 45799999999999999988864 253 58888865
No 428
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=41.13 E-value=39 Score=30.84 Aligned_cols=31 Identities=29% Similarity=0.391 Sum_probs=25.2
Q ss_pred EEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEcccC
Q 007802 332 FLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKG 374 (589)
Q Consensus 332 iv~~GAGsAg~GiA~ll~~~~~~~~G~s~eeA~~~i~~vD~~G 374 (589)
|+|+|+|+.|.-+|-.|.++ | .++.++++..
T Consensus 1 I~I~G~GaiG~~~a~~L~~~-----g-------~~V~l~~r~~ 31 (151)
T PF02558_consen 1 ILIIGAGAIGSLYAARLAQA-----G-------HDVTLVSRSP 31 (151)
T ss_dssp EEEESTSHHHHHHHHHHHHT-----T-------CEEEEEESHH
T ss_pred CEEECcCHHHHHHHHHHHHC-----C-------CceEEEEccc
Confidence 78999999999998888652 4 4688888876
No 429
>PRK07478 short chain dehydrogenase; Provisional
Probab=41.05 E-value=90 Score=30.68 Aligned_cols=37 Identities=22% Similarity=0.298 Sum_probs=22.9
Q ss_pred CCCCceEEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEccc
Q 007802 326 TLADQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSK 373 (589)
Q Consensus 326 ~l~d~riv~~GAGsAg~GiA~ll~~~~~~~~G~s~eeA~~~i~~vD~~ 373 (589)
++++.++||.||+. ||...++..+.+ .|. +++++++.
T Consensus 3 ~~~~k~~lItGas~---giG~~ia~~l~~-~G~-------~v~~~~r~ 39 (254)
T PRK07478 3 RLNGKVAIITGASS---GIGRAAAKLFAR-EGA-------KVVVGARR 39 (254)
T ss_pred CCCCCEEEEeCCCC---hHHHHHHHHHHH-CCC-------EEEEEeCC
Confidence 46788999999753 333444444444 363 58877764
No 430
>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.
Probab=40.95 E-value=75 Score=37.72 Aligned_cols=107 Identities=14% Similarity=0.098 Sum_probs=62.9
Q ss_pred HHHhccCCcEEEeecCCCCCCCHHHHHHHHcCCCCcEEEecCCCCCC--------CCCCHHHHhccccCcEEEeeCCCCC
Q 007802 403 DAVKAIKPTMLMGTSGVGKTFTKEVVEAMASFNEKPVIFALSNPTSQ--------SECTAEEAYTWSKGQAIFASGSPFD 474 (589)
Q Consensus 403 e~V~~vkPtvLIG~S~~~g~Fteevv~~Ma~~~erPIIFaLSNPt~~--------~E~t~eda~~wT~GraifAsGSPf~ 474 (589)
++=+..+|+++|..+|.. +.-.-+..-.++-+|=|.+=.-||... .+-|.+++++..-. |+..-=..
T Consensus 413 ~l~~~~~~~~ilasnTS~--l~i~~ia~~~~~p~r~ig~Hff~P~~~~~lvEvv~g~~Ts~~~~~~~~~---~~~~lgk~ 487 (714)
T TIGR02437 413 EVEQHVREDAILASNTST--ISISLLAKALKRPENFCGMHFFNPVHRMPLVEVIRGEKSSDETIATVVA---YASKMGKT 487 (714)
T ss_pred HHHhhCCCCcEEEECCCC--CCHHHHHhhcCCcccEEEEecCCCcccCceEeecCCCCCCHHHHHHHHH---HHHHcCCE
Confidence 333456899999887753 444333333334445588889999752 34455555443110 11111134
Q ss_pred cceeCCeeeCCCCccccccchhhhHHHHHhCCcccCHHHHHHHH
Q 007802 475 PVEYNGKVFVPGQGNNAYIFPGLGLGLIISGAIRVRDEMLLAAS 518 (589)
Q Consensus 475 pv~~~G~~~~p~Q~NN~~iFPGiglG~~~~~a~~Itd~m~~aAA 518 (589)
||..+ ..||-.=|-..+|-+--+..+...- ++.+-+-.|.
T Consensus 488 pv~v~---d~pGfi~NRl~~~~~~ea~~l~~eG-~~~~~ID~a~ 527 (714)
T TIGR02437 488 PIVVN---DCPGFFVNRVLFPYFGGFSKLLRDG-ADFVRIDKVM 527 (714)
T ss_pred EEEeC---CcccchHHHHHHHHHHHHHHHHHCC-CCHHHHHHHH
Confidence 55542 5788888999998887776665544 6766666653
No 431
>CHL00076 chlB photochlorophyllide reductase subunit B
Probab=40.94 E-value=43 Score=38.10 Aligned_cols=80 Identities=13% Similarity=0.230 Sum_probs=47.6
Q ss_pred CCCCCCceEEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEcccCcccCCcccCCchhchhhhcc---cCCCCC
Q 007802 324 GGTLADQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLIVSSRKESLQHFKKPWAHE---HAPIKS 400 (589)
Q Consensus 324 g~~l~d~riv~~GAGsAg~GiA~ll~~~~~~~~G~s~eeA~~~i~~vD~~GLv~~~r~~~l~~~k~~fa~~---~~~~~~ 400 (589)
...|.+.|++|+|-++-++|+++.+... .|+. +..++.. .....+.+.+.-+.+... .++...
T Consensus 300 ~~~l~Gkrv~I~gd~~~a~~l~~~L~~E----LGm~-------vv~~g~~---~~~~~~~~~~~~~~~~~~~~i~~D~~e 365 (513)
T CHL00076 300 CQNLTGKKAVVFGDATHAASMTKILARE----MGIR-------VSCAGTY---CKHDAEWFKEQVQGFCDEILITDDHTE 365 (513)
T ss_pred ccccCCCEEEEEcCchHHHHHHHHHHHh----CCCE-------EEEecCc---ccchhHHHHHHHHHhccCcEEecCHHH
Confidence 3678999999999999999999988764 3873 2223321 110000011111111110 112235
Q ss_pred HHHHHhccCCcEEEeec
Q 007802 401 LLDAVKAIKPTMLMGTS 417 (589)
Q Consensus 401 L~e~V~~vkPtvLIG~S 417 (589)
+.+.|+..+|+++||-|
T Consensus 366 i~~~I~~~~pdliiGs~ 382 (513)
T CHL00076 366 VGDMIARVEPSAIFGTQ 382 (513)
T ss_pred HHHHHHhcCCCEEEECc
Confidence 77889999999999966
No 432
>PRK14694 putative mercuric reductase; Provisional
Probab=40.93 E-value=35 Score=37.64 Aligned_cols=34 Identities=12% Similarity=0.209 Sum_probs=27.3
Q ss_pred CCceEEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEccc
Q 007802 328 ADQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSK 373 (589)
Q Consensus 328 ~d~riv~~GAGsAg~GiA~ll~~~~~~~~G~s~eeA~~~i~~vD~~ 373 (589)
.+-.++|+|||+||+..|..+.+. | .++-++|+.
T Consensus 5 ~~~dviVIGaG~aG~~aA~~l~~~-----g-------~~v~lie~~ 38 (468)
T PRK14694 5 NNLHIAVIGSGGSAMAAALKATER-----G-------ARVTLIERG 38 (468)
T ss_pred CcCCEEEECCCHHHHHHHHHHHhC-----C-------CcEEEEEcc
Confidence 345799999999999999888653 5 468899975
No 433
>cd04951 GT1_WbdM_like This family is most closely related to the GT1 family of glycosyltransferases and is named after WbdM in Escherichia coli. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have
Probab=40.90 E-value=2.4e+02 Score=28.33 Aligned_cols=37 Identities=30% Similarity=0.302 Sum_probs=28.5
Q ss_pred CHHHHHhccCCcEEEeecCCCCCCCHHHHHHHHcCCCCcEEE
Q 007802 400 SLLDAVKAIKPTMLMGTSGVGKTFTKEVVEAMASFNEKPVIF 441 (589)
Q Consensus 400 ~L~e~V~~vkPtvLIG~S~~~g~Fteevv~~Ma~~~erPIIF 441 (589)
.+.+.++. .|++|..|... .|.--++++|+ +..|+|.
T Consensus 255 ~~~~~~~~--ad~~v~~s~~e-~~~~~~~Ea~a--~G~PvI~ 291 (360)
T cd04951 255 DIAAYYNA--ADLFVLSSAWE-GFGLVVAEAMA--CELPVVA 291 (360)
T ss_pred cHHHHHHh--hceEEeccccc-CCChHHHHHHH--cCCCEEE
Confidence 46667765 78899888754 48889999999 4778885
No 434
>COG3349 Uncharacterized conserved protein [Function unknown]
Probab=40.81 E-value=22 Score=40.43 Aligned_cols=44 Identities=32% Similarity=0.273 Sum_probs=30.8
Q ss_pred ceEEEeCcChHHHHHHHHHHHHHHhccCC--CHHhhcCeE-----EEEcccCcccC
Q 007802 330 QTFLFLGAGEAGTGIAELIALEMSKQTKA--PIEEARKKI-----WLVDSKGLIVS 378 (589)
Q Consensus 330 ~riv~~GAGsAg~GiA~ll~~~~~~~~G~--s~eeA~~~i-----~~vD~~GLv~~ 378 (589)
+||+|+|||-||++.|..|.++ |+ +.=||+.++ =..|++|..++
T Consensus 1 ~rVai~GaG~AgL~~a~~La~~-----g~~vt~~ea~~~~GGk~~s~~~~dg~~~E 51 (485)
T COG3349 1 MRVAIAGAGLAGLAAAYELADA-----GYDVTLYEARDRLGGKVASWRDSDGNHVE 51 (485)
T ss_pred CeEEEEcccHHHHHHHHHHHhC-----CCceEEEeccCccCceeeeeecCCCCeee
Confidence 5899999999999999999875 65 334555442 12556666553
No 435
>PRK11101 glpA sn-glycerol-3-phosphate dehydrogenase subunit A; Provisional
Probab=40.77 E-value=33 Score=39.03 Aligned_cols=33 Identities=30% Similarity=0.540 Sum_probs=26.8
Q ss_pred CceEEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEccc
Q 007802 329 DQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSK 373 (589)
Q Consensus 329 d~riv~~GAGsAg~GiA~ll~~~~~~~~G~s~eeA~~~i~~vD~~ 373 (589)
+-.|||+|+|..|+++|..|.. .|+ ++.++|+.
T Consensus 6 ~~DVvIIGGGi~G~~iA~~La~-----rG~-------~V~LlEk~ 38 (546)
T PRK11101 6 ETDVIIIGGGATGAGIARDCAL-----RGL-------RCILVERH 38 (546)
T ss_pred cccEEEECcCHHHHHHHHHHHH-----cCC-------eEEEEECC
Confidence 3569999999999999998865 264 58888875
No 436
>TIGR03589 PseB UDP-N-acetylglucosamine 4,6-dehydratase. This enzyme catalyzes the first step in the biosynthesis of pseudaminic acid, the conversion of UDP-N-acetylglucosamine to UDP-4-keto-6-deoxy-N-acetylglucosamine. These sequences are members of the broader pfam01073 (3-beta hydroxysteroid dehydrogenase/isomerase family) family.
Probab=40.76 E-value=73 Score=33.31 Aligned_cols=106 Identities=13% Similarity=0.178 Sum_probs=56.1
Q ss_pred CCCceEEEeCc-ChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEcccCcccCCcccCCchhchhhhc-ccCCCCCHHHH
Q 007802 327 LADQTFLFLGA-GEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLIVSSRKESLQHFKKPWAH-EHAPIKSLLDA 404 (589)
Q Consensus 327 l~d~riv~~GA-GsAg~GiA~ll~~~~~~~~G~s~eeA~~~i~~vD~~GLv~~~r~~~l~~~k~~fa~-~~~~~~~L~e~ 404 (589)
+++.+|+|.|| |..|..+++.|++. |- ..+++++|++..-.......+...+..|.. +-.+..++.++
T Consensus 2 ~~~k~vLVTGatG~IG~~l~~~L~~~-----g~-----~~~V~~~~r~~~~~~~~~~~~~~~~~~~v~~Dl~d~~~l~~~ 71 (324)
T TIGR03589 2 FNNKSILITGGTGSFGKAFISRLLEN-----YN-----PKKIIIYSRDELKQWEMQQKFPAPCLRFFIGDVRDKERLTRA 71 (324)
T ss_pred cCCCEEEEeCCCCHHHHHHHHHHHHh-----CC-----CcEEEEEcCChhHHHHHHHHhCCCcEEEEEccCCCHHHHHHH
Confidence 46778999997 66777777766542 31 136888876522100000001100111111 21222357777
Q ss_pred HhccCCcEEEeecCCCCC----C------------CHHHHHHHHcCCCCcEEEecC
Q 007802 405 VKAIKPTMLMGTSGVGKT----F------------TKEVVEAMASFNEKPVIFALS 444 (589)
Q Consensus 405 V~~vkPtvLIG~S~~~g~----F------------teevv~~Ma~~~erPIIFaLS 444 (589)
++. +|++|=+.+.... + +..+++++.+..-+.|||.=|
T Consensus 72 ~~~--iD~Vih~Ag~~~~~~~~~~~~~~~~~Nv~g~~~ll~aa~~~~~~~iV~~SS 125 (324)
T TIGR03589 72 LRG--VDYVVHAAALKQVPAAEYNPFECIRTNINGAQNVIDAAIDNGVKRVVALST 125 (324)
T ss_pred Hhc--CCEEEECcccCCCchhhcCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEEeC
Confidence 775 8999977664321 1 235667777665567888544
No 437
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=40.61 E-value=33 Score=37.76 Aligned_cols=31 Identities=29% Similarity=0.388 Sum_probs=26.1
Q ss_pred eEEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEccc
Q 007802 331 TFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSK 373 (589)
Q Consensus 331 riv~~GAGsAg~GiA~ll~~~~~~~~G~s~eeA~~~i~~vD~~ 373 (589)
|++|+|+|+||+..|..+.+ .| +++.++|+.
T Consensus 2 ~vvVIG~G~aG~~aA~~~~~-----~g-------~~V~lie~~ 32 (458)
T PRK06912 2 KLVVIGGGPAGYVAAITAAQ-----NG-------KNVTLIDEA 32 (458)
T ss_pred eEEEECCCHHHHHHHHHHHh-----CC-------CcEEEEECC
Confidence 79999999999999988765 25 469999975
No 438
>PRK00711 D-amino acid dehydrogenase small subunit; Validated
Probab=40.59 E-value=34 Score=36.46 Aligned_cols=31 Identities=23% Similarity=0.373 Sum_probs=25.3
Q ss_pred eEEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEccc
Q 007802 331 TFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSK 373 (589)
Q Consensus 331 riv~~GAGsAg~GiA~ll~~~~~~~~G~s~eeA~~~i~~vD~~ 373 (589)
+|+|+|||-+|+.+|-.+.. .| .+|.++|+.
T Consensus 2 ~v~IVG~Gi~Gls~A~~l~~-----~g-------~~V~vle~~ 32 (416)
T PRK00711 2 RVVVLGSGVIGVTSAWYLAQ-----AG-------HEVTVIDRQ 32 (416)
T ss_pred EEEEECCcHHHHHHHHHHHH-----CC-------CEEEEEeCC
Confidence 68999999999999988754 25 368888885
No 439
>PRK07588 hypothetical protein; Provisional
Probab=40.35 E-value=34 Score=36.39 Aligned_cols=20 Identities=30% Similarity=0.345 Sum_probs=17.7
Q ss_pred eEEEeCcChHHHHHHHHHHH
Q 007802 331 TFLFLGAGEAGTGIAELIAL 350 (589)
Q Consensus 331 riv~~GAGsAg~GiA~ll~~ 350 (589)
+|+|+|+|.||+..|-.|.+
T Consensus 2 ~V~IVGgG~aGl~~A~~L~~ 21 (391)
T PRK07588 2 KVAISGAGIAGPTLAYWLRR 21 (391)
T ss_pred eEEEECccHHHHHHHHHHHH
Confidence 79999999999999987754
No 440
>COG0499 SAM1 S-adenosylhomocysteine hydrolase [Coenzyme metabolism]
Probab=40.33 E-value=1.4e+02 Score=33.35 Aligned_cols=122 Identities=20% Similarity=0.274 Sum_probs=84.1
Q ss_pred ccCCCchHHHHHHHHHHHHHHhCCCCCCceEEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEcccCcccCCcc
Q 007802 302 NDDIQGTASVVLAGILSALKLVGGTLADQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLIVSSRK 381 (589)
Q Consensus 302 nDDiQGTaaV~lAgll~Alr~~g~~l~d~riv~~GAGsAg~GiA~ll~~~~~~~~G~s~eeA~~~i~~vD~~GLv~~~r~ 381 (589)
.|.-.||+--++-|++. .|..-+....+|+.|=|--|-|||..+.. .| -++++.+-+
T Consensus 185 FDNrYGtgqS~~DgI~R---aTn~liaGK~vVV~GYG~vGrG~A~~~rg-----~G-------A~ViVtEvD-------- 241 (420)
T COG0499 185 FDNRYGTGQSLLDGILR---ATNVLLAGKNVVVAGYGWVGRGIAMRLRG-----MG-------ARVIVTEVD-------- 241 (420)
T ss_pred cccccccchhHHHHHHh---hhceeecCceEEEecccccchHHHHHhhc-----CC-------CeEEEEecC--------
Confidence 37779999999999875 56778899999999999999999987743 24 245533322
Q ss_pred cCCchhchhhhcccCCCCCHHHHHhccCCcEEEeecCCCCCCCHHHHHHHHcCCCCcEEEecCCCCCCCCCCHHH
Q 007802 382 ESLQHFKKPWAHEHAPIKSLLDAVKAIKPTMLMGTSGVGKTFTKEVVEAMASFNEKPVIFALSNPTSQSECTAEE 456 (589)
Q Consensus 382 ~~l~~~k~~fa~~~~~~~~L~e~V~~vkPtvLIG~S~~~g~Fteevv~~Ma~~~erPIIFaLSNPt~~~E~t~ed 456 (589)
.+...+.. -+.=..-++.||++. .|++|=+++.-++.+.|.++.|. .=.|.+=+=- -.-|+..+.
T Consensus 242 -PI~AleA~--MdGf~V~~m~~Aa~~--gDifiT~TGnkdVi~~eh~~~Mk----DgaIl~N~GH-Fd~EI~~~~ 306 (420)
T COG0499 242 -PIRALEAA--MDGFRVMTMEEAAKT--GDIFVTATGNKDVIRKEHFEKMK----DGAILANAGH-FDVEIDVAG 306 (420)
T ss_pred -chHHHHHh--hcCcEEEEhHHhhhc--CCEEEEccCCcCccCHHHHHhcc----CCeEEecccc-cceeccHHH
Confidence 11111111 122223578999987 89999999999999999999995 4445443321 235666655
No 441
>PLN02350 phosphogluconate dehydrogenase (decarboxylating)
Probab=40.32 E-value=86 Score=35.80 Aligned_cols=97 Identities=18% Similarity=0.142 Sum_probs=61.7
Q ss_pred eEEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEcccCcccCCcccCCchhchhhhccc-C---CCCCHHHHHh
Q 007802 331 TFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLIVSSRKESLQHFKKPWAHEH-A---PIKSLLDAVK 406 (589)
Q Consensus 331 riv~~GAGsAg~GiA~ll~~~~~~~~G~s~eeA~~~i~~vD~~GLv~~~r~~~l~~~k~~fa~~~-~---~~~~L~e~V~ 406 (589)
+|-|+|-|..|.++|.-|+.. |. ++.++|+. .++ ..+....++... . ...|+.|+++
T Consensus 8 ~IG~IGLG~MG~~mA~nL~~~-----G~-------~V~V~NRt----~~k---~~~l~~~~~~~Ga~~~~~a~s~~e~v~ 68 (493)
T PLN02350 8 RIGLAGLAVMGQNLALNIAEK-----GF-------PISVYNRT----TSK---VDETVERAKKEGNLPLYGFKDPEDFVL 68 (493)
T ss_pred CEEEEeeHHHHHHHHHHHHhC-----CC-------eEEEECCC----HHH---HHHHHHhhhhcCCcccccCCCHHHHHh
Confidence 689999999999999999753 64 57777763 221 222222222211 1 3468999997
Q ss_pred cc-CCcEEEeecCCCCCCCHHHHHHHHcC-CCCcEEEecCCCC
Q 007802 407 AI-KPTMLMGTSGVGKTFTKEVVEAMASF-NEKPVIFALSNPT 447 (589)
Q Consensus 407 ~v-kPtvLIG~S~~~g~Fteevv~~Ma~~-~erPIIFaLSNPt 447 (589)
.+ +|+++| ++=..+.-.++|+..+... .+.-||.=+||=.
T Consensus 69 ~l~~~dvIi-~~v~~~~aV~~Vi~gl~~~l~~G~iiID~sT~~ 110 (493)
T PLN02350 69 SIQKPRSVI-ILVKAGAPVDQTIKALSEYMEPGDCIIDGGNEW 110 (493)
T ss_pred cCCCCCEEE-EECCCcHHHHHHHHHHHhhcCCCCEEEECCCCC
Confidence 54 588888 4444455566666544433 4677999999854
No 442
>PRK07890 short chain dehydrogenase; Provisional
Probab=40.25 E-value=74 Score=31.16 Aligned_cols=36 Identities=19% Similarity=0.409 Sum_probs=24.5
Q ss_pred CCCceEEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEccc
Q 007802 327 LADQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSK 373 (589)
Q Consensus 327 l~d~riv~~GAGsAg~GiA~ll~~~~~~~~G~s~eeA~~~i~~vD~~ 373 (589)
+++.+++|.||++ ||...|+..+.+ .|. +++++|+.
T Consensus 3 l~~k~vlItGa~~---~IG~~la~~l~~-~G~-------~V~~~~r~ 38 (258)
T PRK07890 3 LKGKVVVVSGVGP---GLGRTLAVRAAR-AGA-------DVVLAART 38 (258)
T ss_pred cCCCEEEEECCCC---cHHHHHHHHHHH-cCC-------EEEEEeCC
Confidence 5678999999854 455555555554 363 68888864
No 443
>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated
Probab=40.17 E-value=31 Score=36.64 Aligned_cols=34 Identities=21% Similarity=0.314 Sum_probs=26.4
Q ss_pred CceEEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEcccC
Q 007802 329 DQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKG 374 (589)
Q Consensus 329 d~riv~~GAGsAg~GiA~ll~~~~~~~~G~s~eeA~~~i~~vD~~G 374 (589)
...|+|+|||.+|+..|-.|.+ .|+ ++.++|++-
T Consensus 6 ~~dV~IvGaG~aGl~~A~~La~-----~G~-------~v~liE~~~ 39 (392)
T PRK08773 6 RRDAVIVGGGVVGAACALALAD-----AGL-------SVALVEGRE 39 (392)
T ss_pred CCCEEEECcCHHHHHHHHHHhc-----CCC-------EEEEEeCCC
Confidence 3579999999999999977643 364 488888763
No 444
>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit. Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.
Probab=40.03 E-value=33 Score=42.45 Aligned_cols=34 Identities=21% Similarity=0.342 Sum_probs=27.5
Q ss_pred CCceEEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEccc
Q 007802 328 ADQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSK 373 (589)
Q Consensus 328 ~d~riv~~GAGsAg~GiA~ll~~~~~~~~G~s~eeA~~~i~~vD~~ 373 (589)
+..+|+|+|||.||+..|..|.. .|. ++.++|+.
T Consensus 536 ~~kkVaIIGGGPAGLSAA~~LAr-----~G~-------~VTV~Ek~ 569 (1012)
T TIGR03315 536 SAHKVAVIGAGPAGLSAGYFLAR-----AGH-------PVTVFEKK 569 (1012)
T ss_pred CCCcEEEECCCHHHHHHHHHHHH-----CCC-------eEEEEecc
Confidence 45799999999999999998864 363 58888865
No 445
>COG3380 Predicted NAD/FAD-dependent oxidoreductase [General function prediction only]
Probab=39.94 E-value=32 Score=36.92 Aligned_cols=32 Identities=19% Similarity=0.252 Sum_probs=25.3
Q ss_pred eEEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEcccC
Q 007802 331 TFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKG 374 (589)
Q Consensus 331 riv~~GAGsAg~GiA~ll~~~~~~~~G~s~eeA~~~i~~vD~~G 374 (589)
-|+|+|||.||+..|..|.++ |. .+.++|+-+
T Consensus 3 siaIVGaGiAGl~aA~~L~~a-----G~-------~vtV~eKg~ 34 (331)
T COG3380 3 SIAIVGAGIAGLAAAYALREA-----GR-------EVTVFEKGR 34 (331)
T ss_pred cEEEEccchHHHHHHHHHHhc-----Cc-------EEEEEEcCC
Confidence 489999999999999988663 65 377788654
No 446
>PRK11728 hydroxyglutarate oxidase; Provisional
Probab=39.93 E-value=37 Score=36.33 Aligned_cols=34 Identities=18% Similarity=0.346 Sum_probs=26.6
Q ss_pred ceEEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEccc
Q 007802 330 QTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSK 373 (589)
Q Consensus 330 ~riv~~GAGsAg~GiA~ll~~~~~~~~G~s~eeA~~~i~~vD~~ 373 (589)
..|+|+|||.+|+.+|-.|.+.. .| .++.++|+.
T Consensus 3 ~dVvIIGgGi~G~s~A~~La~~~---~g-------~~V~llE~~ 36 (393)
T PRK11728 3 YDFVIIGGGIVGLSTAMQLQERY---PG-------ARIAVLEKE 36 (393)
T ss_pred ccEEEECCcHHHHHHHHHHHHhC---CC-------CeEEEEeCC
Confidence 46999999999999998886531 13 468899986
No 447
>KOG2013 consensus SMT3/SUMO-activating complex, catalytic component UBA2 [Posttranslational modification, protein turnover, chaperones]
Probab=39.87 E-value=37 Score=38.83 Aligned_cols=82 Identities=20% Similarity=0.294 Sum_probs=51.1
Q ss_pred CCCCCceEEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEcccCcccCCcccCCchhchhhhcccCC---CCCH
Q 007802 325 GTLADQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLIVSSRKESLQHFKKPWAHEHAP---IKSL 401 (589)
Q Consensus 325 ~~l~d~riv~~GAGsAg~GiA~ll~~~~~~~~G~s~eeA~~~i~~vD~~GLv~~~r~~~l~~~k~~fa~~~~~---~~~L 401 (589)
+.+++-|||++|||..|+-.-+.|+. .|+ +.|.++|.+-+ +-. +|+. |--|-+++-. ...-
T Consensus 8 eai~~~riLvVGaGGIGCELLKnLal-----~gf------~~IhiIDlDTI---DlS-NLNR-QFLFrkkhVgqsKA~vA 71 (603)
T KOG2013|consen 8 EAIKSGRILVVGAGGIGCELLKNLAL-----TGF------EEIHIIDLDTI---DLS-NLNR-QFLFRKKHVGQSKATVA 71 (603)
T ss_pred HHhccCeEEEEecCcccHHHHHHHHH-----hcC------CeeEEEeccce---ecc-chhh-hheeehhhcCchHHHHH
Confidence 34578999999999998877776654 376 67999999833 211 2332 2223333211 1346
Q ss_pred HHHHhccCCcEEEeecCCCCCC
Q 007802 402 LDAVKAIKPTMLMGTSGVGKTF 423 (589)
Q Consensus 402 ~e~V~~vkPtvLIG~S~~~g~F 423 (589)
.++|++..|.+=| ++=+..++
T Consensus 72 ~~~v~~Fnpn~~l-~~yhanI~ 92 (603)
T KOG2013|consen 72 AKAVKQFNPNIKL-VPYHANIK 92 (603)
T ss_pred HHHHHHhCCCCce-Eecccccc
Confidence 6889988888766 34344443
No 448
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=39.83 E-value=36 Score=37.54 Aligned_cols=33 Identities=21% Similarity=0.225 Sum_probs=26.8
Q ss_pred CceEEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEccc
Q 007802 329 DQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSK 373 (589)
Q Consensus 329 d~riv~~GAGsAg~GiA~ll~~~~~~~~G~s~eeA~~~i~~vD~~ 373 (589)
.-.+||+|+|+||+..|..+.+ .| +++.++|+.
T Consensus 4 ~ydvvVIG~GpaG~~aA~~aa~-----~G-------~~v~lie~~ 36 (472)
T PRK05976 4 EYDLVIIGGGPGGYVAAIRAGQ-----LG-------LKTALVEKG 36 (472)
T ss_pred cccEEEECCCHHHHHHHHHHHh-----CC-------CeEEEEEcc
Confidence 3469999999999999987755 25 579999975
No 449
>PRK08244 hypothetical protein; Provisional
Probab=39.80 E-value=34 Score=37.91 Aligned_cols=32 Identities=22% Similarity=0.400 Sum_probs=24.5
Q ss_pred ceEEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEccc
Q 007802 330 QTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSK 373 (589)
Q Consensus 330 ~riv~~GAGsAg~GiA~ll~~~~~~~~G~s~eeA~~~i~~vD~~ 373 (589)
..|+|+|||.+|+..|-.|.+ .|+ ++.++|+.
T Consensus 3 ~dVlIVGaGpaGl~lA~~L~~-----~G~-------~v~viEr~ 34 (493)
T PRK08244 3 YEVIIIGGGPVGLMLASELAL-----AGV-------KTCVIERL 34 (493)
T ss_pred CCEEEECCCHHHHHHHHHHHH-----CCC-------cEEEEecC
Confidence 469999999999999988855 365 35666654
No 450
>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family. This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki
Probab=39.77 E-value=32 Score=35.89 Aligned_cols=31 Identities=26% Similarity=0.427 Sum_probs=24.0
Q ss_pred EEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEcccC
Q 007802 332 FLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKG 374 (589)
Q Consensus 332 iv~~GAGsAg~GiA~ll~~~~~~~~G~s~eeA~~~i~~vD~~G 374 (589)
|+|+|||.||+-.|-.|.+ .|+ ++.++|+.-
T Consensus 2 ViIvGaG~aGl~~A~~L~~-----~G~-------~v~v~Er~~ 32 (385)
T TIGR01988 2 IVIVGGGMVGLALALALAR-----SGL-------KIALIEATP 32 (385)
T ss_pred EEEECCCHHHHHHHHHHhc-----CCC-------EEEEEeCCC
Confidence 8999999999999987764 364 466777764
No 451
>PRK10892 D-arabinose 5-phosphate isomerase; Provisional
Probab=39.69 E-value=1.2e+02 Score=31.86 Aligned_cols=84 Identities=17% Similarity=0.277 Sum_probs=49.0
Q ss_pred CceEEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEcccCcccCCcccCCchhchhhhcccCCCCCHHHHHhcc
Q 007802 329 DQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLIVSSRKESLQHFKKPWAHEHAPIKSLLDAVKAI 408 (589)
Q Consensus 329 d~riv~~GAGsAg~GiA~ll~~~~~~~~G~s~eeA~~~i~~vD~~GLv~~~r~~~l~~~k~~fa~~~~~~~~L~e~V~~v 408 (589)
.+||.|+|.|+.+. +|+.+...|.+ .| ++.++++...... .. + .. + -
T Consensus 47 ~~~I~i~G~G~S~~-~a~~~~~~l~~-~g-------~~~~~~~~~~~~~---------~~---~------~~----~--~ 93 (326)
T PRK10892 47 KGKVVVMGMGKSGH-IGRKMAATFAS-TG-------TPSFFVHPGEAAH---------GD---L------GM----V--T 93 (326)
T ss_pred CCeEEEEeCcHhHH-HHHHHHHHHhc-CC-------ceeEEeChHHhhc---------cc---c------cc----C--C
Confidence 36999999997776 67666666654 34 3344332211100 00 0 00 1 1
Q ss_pred CCcEEEeecCCCCCCCHHHHHHHH--cCCCCcEEEecCCCC
Q 007802 409 KPTMLMGTSGVGKTFTKEVVEAMA--SFNEKPVIFALSNPT 447 (589)
Q Consensus 409 kPtvLIG~S~~~g~Fteevv~~Ma--~~~erPIIFaLSNPt 447 (589)
+-|++|++|..|. |+++++.+. +.+.-|+|-==+||.
T Consensus 94 ~~d~~I~iS~sG~--t~~~~~~~~~ak~~g~~vi~iT~~~~ 132 (326)
T PRK10892 94 PQDVVIAISNSGE--SSEILALIPVLKRLHVPLICITGRPE 132 (326)
T ss_pred CCCEEEEEeCCCC--CHHHHHHHHHHHHCCCcEEEEECCCC
Confidence 4689999998774 888888765 344456665555554
No 452
>PRK13403 ketol-acid reductoisomerase; Provisional
Probab=39.69 E-value=70 Score=34.93 Aligned_cols=27 Identities=22% Similarity=0.286 Sum_probs=23.8
Q ss_pred CCCCCceEEEeCcChHHHHHHHHHHHH
Q 007802 325 GTLADQTFLFLGAGEAGTGIAELIALE 351 (589)
Q Consensus 325 ~~l~d~riv~~GAGsAg~GiA~ll~~~ 351 (589)
..|++.+|.|+|-|+-|.++|+.+...
T Consensus 12 ~~LkgKtVGIIG~GsIG~amA~nL~d~ 38 (335)
T PRK13403 12 ELLQGKTVAVIGYGSQGHAQAQNLRDS 38 (335)
T ss_pred hhhCcCEEEEEeEcHHHHHHHHHHHHC
Confidence 457899999999999999999988653
No 453
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=39.63 E-value=41 Score=33.97 Aligned_cols=98 Identities=18% Similarity=0.257 Sum_probs=55.3
Q ss_pred eEEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEcccCcccCCcccCCchhchhhhc--ccCCCCCHHHH-Hhc
Q 007802 331 TFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLIVSSRKESLQHFKKPWAH--EHAPIKSLLDA-VKA 407 (589)
Q Consensus 331 riv~~GAGsAg~GiA~ll~~~~~~~~G~s~eeA~~~i~~vD~~GLv~~~r~~~l~~~k~~fa~--~~~~~~~L~e~-V~~ 407 (589)
+|+|+|+|..|..+|+.|.+ +| .++.++|.+--.... .+.+..--.+. +..+.+.|+++ ++
T Consensus 2 ~iiIiG~G~vG~~va~~L~~-----~g-------~~Vv~Id~d~~~~~~---~~~~~~~~~~v~gd~t~~~~L~~agi~- 65 (225)
T COG0569 2 KIIIIGAGRVGRSVARELSE-----EG-------HNVVLIDRDEERVEE---FLADELDTHVVIGDATDEDVLEEAGID- 65 (225)
T ss_pred EEEEECCcHHHHHHHHHHHh-----CC-------CceEEEEcCHHHHHH---HhhhhcceEEEEecCCCHHHHHhcCCC-
Confidence 79999999999999999865 35 578888886221111 01100000011 12223457776 55
Q ss_pred cCCcEEEeecCCCCCCCHHHHHHHHcC-CCCcEEEe-cCCCC
Q 007802 408 IKPTMLMGTSGVGKTFTKEVVEAMASF-NEKPVIFA-LSNPT 447 (589)
Q Consensus 408 vkPtvLIG~S~~~g~Fteevv~~Ma~~-~erPIIFa-LSNPt 447 (589)
+.|++|-+++.. -.--++-.|+.. ..-|-|.+ ..||.
T Consensus 66 -~aD~vva~t~~d--~~N~i~~~la~~~~gv~~viar~~~~~ 104 (225)
T COG0569 66 -DADAVVAATGND--EVNSVLALLALKEFGVPRVIARARNPE 104 (225)
T ss_pred -cCCEEEEeeCCC--HHHHHHHHHHHHhcCCCcEEEEecCHH
Confidence 489999888754 234455555532 23444444 44554
No 454
>TIGR01408 Ube1 ubiquitin-activating enzyme E1. This model represents the full length, over a thousand amino acids, of a multicopy family of eukaryotic proteins, many of which are designated ubiquitin-activating enzyme E1. Members have two copies of the ThiF family domain (pfam00899), a repeat found in ubiquitin-activating proteins (pfam02134), and other regions.
Probab=39.60 E-value=25 Score=43.45 Aligned_cols=39 Identities=28% Similarity=0.388 Sum_probs=34.4
Q ss_pred CCCCCceEEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEcccC
Q 007802 325 GTLADQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKG 374 (589)
Q Consensus 325 ~~l~d~riv~~GAGsAg~GiA~ll~~~~~~~~G~s~eeA~~~i~~vD~~G 374 (589)
++|+..+|+|+|+|.-|.-||+.|+.+ |+ ++|.++|.+-
T Consensus 20 ~kL~~s~VLIiG~gGLG~EiaKnL~la-----GV------g~iti~D~d~ 58 (1008)
T TIGR01408 20 QKMAKSNVLISGMGGLGLEIAKNLVLA-----GV------KSVTLHDTEK 58 (1008)
T ss_pred HHHhhCcEEEECCCHHHHHHHHHHHHc-----CC------CeEEEEeCCe
Confidence 568899999999999999999999875 76 7899999873
No 455
>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=39.53 E-value=38 Score=36.09 Aligned_cols=32 Identities=16% Similarity=0.212 Sum_probs=25.0
Q ss_pred ceEEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEccc
Q 007802 330 QTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSK 373 (589)
Q Consensus 330 ~riv~~GAGsAg~GiA~ll~~~~~~~~G~s~eeA~~~i~~vD~~ 373 (589)
.+|+|+|||.||+..|-.|.+ .|+ ++.++|+.
T Consensus 4 ~dv~IvGgG~aGl~~A~~L~~-----~G~-------~v~l~E~~ 35 (384)
T PRK08849 4 YDIAVVGGGMVGAATALGFAK-----QGR-------SVAVIEGG 35 (384)
T ss_pred ccEEEECcCHHHHHHHHHHHh-----CCC-------cEEEEcCC
Confidence 579999999999999977754 365 46777754
No 456
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=39.42 E-value=38 Score=37.00 Aligned_cols=32 Identities=31% Similarity=0.346 Sum_probs=26.0
Q ss_pred ceEEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEccc
Q 007802 330 QTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSK 373 (589)
Q Consensus 330 ~riv~~GAGsAg~GiA~ll~~~~~~~~G~s~eeA~~~i~~vD~~ 373 (589)
-.+||+|||.||+..|..+.+. | +++.++|+.
T Consensus 4 yDvvIIG~G~aGl~aA~~l~~~-----g-------~~v~lie~~ 35 (460)
T PRK06292 4 YDVIVIGAGPAGYVAARRAAKL-----G-------KKVALIEKG 35 (460)
T ss_pred ccEEEECCCHHHHHHHHHHHHC-----C-------CeEEEEeCC
Confidence 4699999999999999877552 5 568889984
No 457
>TIGR01789 lycopene_cycl lycopene cyclase. This model represents a family of bacterial lycopene cyclases catalyzing the transformation of lycopene to carotene. These enzymes are found in a limited spectrum of alpha and gamma proteobacteria as well as Flavobacterium.
Probab=39.37 E-value=44 Score=36.02 Aligned_cols=36 Identities=22% Similarity=0.299 Sum_probs=26.0
Q ss_pred EEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEcccCccc
Q 007802 332 FLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLIV 377 (589)
Q Consensus 332 iv~~GAGsAg~GiA~ll~~~~~~~~G~s~eeA~~~i~~vD~~GLv~ 377 (589)
|+|+|||.||+.+|-.|.+. . .| .+|.++|+.-.+.
T Consensus 2 viIvGaG~AGl~lA~~L~~~--~-~g-------~~V~lle~~~~~~ 37 (370)
T TIGR01789 2 CIIVGGGLAGGLIALRLQRA--R-PD-------FRIRVIEAGRTIG 37 (370)
T ss_pred EEEECccHHHHHHHHHHHhc--C-CC-------CeEEEEeCCCCCC
Confidence 78999999999999877643 1 24 3577888764433
No 458
>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]
Probab=39.34 E-value=1.7e+02 Score=33.23 Aligned_cols=36 Identities=19% Similarity=0.376 Sum_probs=29.2
Q ss_pred CCCCceEEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEccc
Q 007802 326 TLADQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSK 373 (589)
Q Consensus 326 ~l~d~riv~~GAGsAg~GiA~ll~~~~~~~~G~s~eeA~~~i~~vD~~ 373 (589)
.+.++||+++|-|-.|+++|+.|.+. | .++++.|.+
T Consensus 4 ~~~~~kv~V~GLG~sG~a~a~~L~~~-----G-------~~v~v~D~~ 39 (448)
T COG0771 4 DFQGKKVLVLGLGKSGLAAARFLLKL-----G-------AEVTVSDDR 39 (448)
T ss_pred cccCCEEEEEecccccHHHHHHHHHC-----C-------CeEEEEcCC
Confidence 34589999999999999999988763 6 358888865
No 459
>PRK06185 hypothetical protein; Provisional
Probab=39.34 E-value=35 Score=36.37 Aligned_cols=35 Identities=17% Similarity=0.319 Sum_probs=26.6
Q ss_pred CCceEEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEcccC
Q 007802 328 ADQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKG 374 (589)
Q Consensus 328 ~d~riv~~GAGsAg~GiA~ll~~~~~~~~G~s~eeA~~~i~~vD~~G 374 (589)
.+..|+|+|||.+|+..|-.|.+ .|+ ++.++|++.
T Consensus 5 ~~~dV~IvGgG~~Gl~~A~~La~-----~G~-------~v~liE~~~ 39 (407)
T PRK06185 5 ETTDCCIVGGGPAGMMLGLLLAR-----AGV-------DVTVLEKHA 39 (407)
T ss_pred ccccEEEECCCHHHHHHHHHHHh-----CCC-------cEEEEecCC
Confidence 34679999999999999877654 365 477788763
No 460
>PRK07589 ornithine cyclodeaminase; Validated
Probab=39.31 E-value=3.1e+02 Score=29.88 Aligned_cols=104 Identities=16% Similarity=0.200 Sum_probs=64.3
Q ss_pred CCceEEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEcccCcccCCcccCCchhchhhhccc---CCCCCHHHH
Q 007802 328 ADQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLIVSSRKESLQHFKKPWAHEH---APIKSLLDA 404 (589)
Q Consensus 328 ~d~riv~~GAGsAg~GiA~ll~~~~~~~~G~s~eeA~~~i~~vD~~GLv~~~r~~~l~~~k~~fa~~~---~~~~~L~e~ 404 (589)
.-.++.|+|+|.-+..-++.++... .+ ++|+++|+. ..+ ...+.+.+.+.. ....+++|+
T Consensus 128 da~~l~iiGaG~QA~~~l~a~~~vr----~i------~~V~v~~r~----~~~---a~~~~~~~~~~~~~v~~~~~~~~a 190 (346)
T PRK07589 128 DSRTMALIGNGAQSEFQALAFKALL----GI------EEIRLYDID----PAA---TAKLARNLAGPGLRIVACRSVAEA 190 (346)
T ss_pred CCcEEEEECCcHHHHHHHHHHHHhC----Cc------eEEEEEeCC----HHH---HHHHHHHHHhcCCcEEEeCCHHHH
Confidence 3478999999998877776665531 23 778887664 111 222222222211 113689999
Q ss_pred HhccCCcEEEeecCCC---CCCCHHHHHHHHcCCCCcEEEec-CCCCCCCCCCHHH
Q 007802 405 VKAIKPTMLMGTSGVG---KTFTKEVVEAMASFNEKPVIFAL-SNPTSQSECTAEE 456 (589)
Q Consensus 405 V~~vkPtvLIG~S~~~---g~Fteevv~~Ma~~~erPIIFaL-SNPt~~~E~t~ed 456 (589)
++. .|+++-+.+.. .+|..+.++. .--|-++ |+--.+.|+.++-
T Consensus 191 v~~--ADIIvtaT~S~~~~Pvl~~~~lkp------G~hV~aIGs~~p~~~Eld~~~ 238 (346)
T PRK07589 191 VEG--ADIITTVTADKTNATILTDDMVEP------GMHINAVGGDCPGKTELHPDI 238 (346)
T ss_pred Hhc--CCEEEEecCCCCCCceecHHHcCC------CcEEEecCCCCCCcccCCHHH
Confidence 987 99999876422 4688887753 2235554 4544578999875
No 461
>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=39.31 E-value=38 Score=36.28 Aligned_cols=33 Identities=24% Similarity=0.314 Sum_probs=26.1
Q ss_pred CceEEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEccc
Q 007802 329 DQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSK 373 (589)
Q Consensus 329 d~riv~~GAGsAg~GiA~ll~~~~~~~~G~s~eeA~~~i~~vD~~ 373 (589)
...|+|+|||.||+-.|-.|.. .|+ ++-++++.
T Consensus 2 ~~dV~IvGaG~aGl~lA~~L~~-----~G~-------~V~l~E~~ 34 (387)
T COG0654 2 MLDVAIVGAGPAGLALALALAR-----AGL-------DVTLLERA 34 (387)
T ss_pred CCCEEEECCCHHHHHHHHHHHh-----CCC-------cEEEEccC
Confidence 3579999999999999887755 374 47778876
No 462
>PRK13369 glycerol-3-phosphate dehydrogenase; Provisional
Probab=39.26 E-value=33 Score=38.44 Aligned_cols=33 Identities=27% Similarity=0.407 Sum_probs=27.1
Q ss_pred ceEEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEcccC
Q 007802 330 QTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKG 374 (589)
Q Consensus 330 ~riv~~GAGsAg~GiA~ll~~~~~~~~G~s~eeA~~~i~~vD~~G 374 (589)
-.|||+|+|.+|+++|..+.. .|+ ++.+++++-
T Consensus 7 ~DVvIIGGGi~G~~~A~~la~-----rG~-------~V~LlEk~d 39 (502)
T PRK13369 7 YDLFVIGGGINGAGIARDAAG-----RGL-------KVLLCEKDD 39 (502)
T ss_pred cCEEEECCCHHHHHHHHHHHh-----CCC-------cEEEEECCC
Confidence 479999999999999998865 375 488898763
No 463
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=39.18 E-value=41 Score=39.06 Aligned_cols=36 Identities=25% Similarity=0.416 Sum_probs=28.7
Q ss_pred CCCceEEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEcccC
Q 007802 327 LADQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKG 374 (589)
Q Consensus 327 l~d~riv~~GAGsAg~GiA~ll~~~~~~~~G~s~eeA~~~i~~vD~~G 374 (589)
.+..||+|+|+|.||+..|..|.. .|. ++.++|+..
T Consensus 308 ~~~kkVaIIG~GpaGl~aA~~L~~-----~G~-------~Vtv~e~~~ 343 (639)
T PRK12809 308 PRSEKVAVIGAGPAGLGCADILAR-----AGV-------QVDVFDRHP 343 (639)
T ss_pred CCCCEEEEECcCHHHHHHHHHHHH-----cCC-------cEEEEeCCC
Confidence 358999999999999999988865 263 477888763
No 464
>PRK06200 2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrogenase; Provisional
Probab=39.06 E-value=38 Score=33.63 Aligned_cols=37 Identities=22% Similarity=0.338 Sum_probs=23.7
Q ss_pred CCCCceEEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEccc
Q 007802 326 TLADQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSK 373 (589)
Q Consensus 326 ~l~d~riv~~GAGsAg~GiA~ll~~~~~~~~G~s~eeA~~~i~~vD~~ 373 (589)
.+++.++||.||.+ ||...++..+.+ .|. +++++|++
T Consensus 3 ~~~~k~vlVtGas~---gIG~~ia~~l~~-~G~-------~V~~~~r~ 39 (263)
T PRK06200 3 WLHGQVALITGGGS---GIGRALVERFLA-EGA-------RVAVLERS 39 (263)
T ss_pred CCCCCEEEEeCCCc---hHHHHHHHHHHH-CCC-------EEEEEeCC
Confidence 36788999999753 344445555444 363 58888864
No 465
>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=38.99 E-value=30 Score=36.99 Aligned_cols=32 Identities=25% Similarity=0.448 Sum_probs=25.1
Q ss_pred ceEEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEccc
Q 007802 330 QTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSK 373 (589)
Q Consensus 330 ~riv~~GAGsAg~GiA~ll~~~~~~~~G~s~eeA~~~i~~vD~~ 373 (589)
-.|+|+|||.+|+..|-.|.. .|+ ++.++|+.
T Consensus 3 ~dV~IVGaG~aGl~~A~~L~~-----~G~-------~v~viE~~ 34 (405)
T PRK05714 3 ADLLIVGAGMVGSALALALQG-----SGL-------EVLLLDGG 34 (405)
T ss_pred ccEEEECccHHHHHHHHHHhc-----CCC-------EEEEEcCC
Confidence 369999999999999987754 364 57777775
No 466
>cd00316 Oxidoreductase_nitrogenase The nitrogenase enzyme system catalyzes the ATP-dependent reduction of dinitrogen to ammonia. This group contains both alpha and beta subunits of component 1 of the three known genetically distinct types of nitrogenase systems: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium-dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase) and, both subunits of Protochlorophyllide (Pchlide) reductase and chlorophyllide (chlide) reductase. The nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). The most widespread and best characterized nitrogenase is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers whose alpha and beta subunits are similar to the alpha and beta subunits of MoFe. For MoFe, each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molec
Probab=38.79 E-value=1.1e+02 Score=32.57 Aligned_cols=105 Identities=14% Similarity=0.263 Sum_probs=56.3
Q ss_pred HHHHHHhCCCCCCceEEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEcccCcccCCcccCCchhchhhhc---
Q 007802 317 LSALKLVGGTLADQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLIVSSRKESLQHFKKPWAH--- 393 (589)
Q Consensus 317 l~Alr~~g~~l~d~riv~~GAGsAg~GiA~ll~~~~~~~~G~s~eeA~~~i~~vD~~GLv~~~r~~~l~~~k~~fa~--- 393 (589)
..++.-....+++.|++++|-+.-..++++++.. .|+... .+.. .... .............
T Consensus 267 ~~~~~~~~~~l~g~~~~i~~~~~~~~~~~~~l~e-----~G~~v~----~~~~------~~~~-~~~~~~~~~~~~~~~~ 330 (399)
T cd00316 267 LDALADYHEYLGGKKVAIFGDGDLLLALARFLLE-----LGMEVV----AAGT------TFGH-KADYERREELLGEGTE 330 (399)
T ss_pred HHHHHHHHHHhcCCEEEEECCCcHHHHHHHHHHH-----CCCEEE----EEEe------CCCC-HHHHHHHHHhcCCCCE
Confidence 3444444566889999999999888999877654 376321 1111 0110 0000000000000
Q ss_pred --ccCCCCCHHHHHhccCCcEEEeecCCCCCCCHHHHHHHHcCCCCcEEEecCCCC
Q 007802 394 --EHAPIKSLLDAVKAIKPTMLMGTSGVGKTFTKEVVEAMASFNEKPVIFALSNPT 447 (589)
Q Consensus 394 --~~~~~~~L~e~V~~vkPtvLIG~S~~~g~Fteevv~~Ma~~~erPIIFaLSNPt 447 (589)
...+...+.+.++..+||.+||-|.. ....+.+ ..|.+ .+++|.
T Consensus 331 ~~~~~d~~~~~~~~~~~~pdl~ig~~~~-----~~~~~~~----~ip~~-~~~~p~ 376 (399)
T cd00316 331 VVDDGDLEELEELIRELKPDLIIGGSKG-----RYIAKKL----GIPLV-RIGFPI 376 (399)
T ss_pred EEeCCCHHHHHHHHhhcCCCEEEECCcH-----HHHHHHh----CCCEE-EcCCcc
Confidence 11222457777888889999997652 2333333 46763 567664
No 467
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=38.60 E-value=34 Score=38.90 Aligned_cols=32 Identities=16% Similarity=0.362 Sum_probs=25.3
Q ss_pred eEEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEcccC
Q 007802 331 TFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKG 374 (589)
Q Consensus 331 riv~~GAGsAg~GiA~ll~~~~~~~~G~s~eeA~~~i~~vD~~G 374 (589)
.|||+|||.||+..|..+.. .| .++.++|+..
T Consensus 6 DVvIIGgGpAGL~AA~~lar-----~g-------~~V~liE~~~ 37 (555)
T TIGR03143 6 DLIIIGGGPAGLSAGIYAGR-----AK-------LDTLIIEKDD 37 (555)
T ss_pred cEEEECCCHHHHHHHHHHHH-----CC-------CCEEEEecCC
Confidence 69999999999999987754 24 4688888653
No 468
>PLN02653 GDP-mannose 4,6-dehydratase
Probab=38.51 E-value=1.2e+02 Score=31.51 Aligned_cols=82 Identities=13% Similarity=0.143 Sum_probs=47.3
Q ss_pred CCCCceEEEeCc-ChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEcccCcc-cCCcccCCch------hchhhhc-ccC
Q 007802 326 TLADQTFLFLGA-GEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLI-VSSRKESLQH------FKKPWAH-EHA 396 (589)
Q Consensus 326 ~l~d~riv~~GA-GsAg~GiA~ll~~~~~~~~G~s~eeA~~~i~~vD~~GLv-~~~r~~~l~~------~k~~fa~-~~~ 396 (589)
+++..+|+|.|| |-.|..+++.|.+ .|. +++.+|+..-- ...+-..+.. .+..+.+ +-.
T Consensus 3 ~~~~~~vlVTGatGfiG~~l~~~L~~-----~G~-------~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~ 70 (340)
T PLN02653 3 DPPRKVALITGITGQDGSYLTEFLLS-----KGY-------EVHGIIRRSSNFNTQRLDHIYIDPHPNKARMKLHYGDLS 70 (340)
T ss_pred CCCCCEEEEECCCCccHHHHHHHHHH-----CCC-------EEEEEecccccccccchhhhccccccccCceEEEEecCC
Confidence 467789999996 7788888877765 263 57777664210 0000000100 0111111 112
Q ss_pred CCCCHHHHHhccCCcEEEeecCC
Q 007802 397 PIKSLLDAVKAIKPTMLMGTSGV 419 (589)
Q Consensus 397 ~~~~L~e~V~~vkPtvLIG~S~~ 419 (589)
+..++.++++..+||++|=+.+.
T Consensus 71 d~~~~~~~~~~~~~d~Vih~A~~ 93 (340)
T PLN02653 71 DASSLRRWLDDIKPDEVYNLAAQ 93 (340)
T ss_pred CHHHHHHHHHHcCCCEEEECCcc
Confidence 23467788888899999988775
No 469
>PLN02852 ferredoxin-NADP+ reductase
Probab=38.50 E-value=23 Score=40.23 Aligned_cols=42 Identities=14% Similarity=0.150 Sum_probs=31.6
Q ss_pred HhCCCCCCceEEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEccc
Q 007802 322 LVGGTLADQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSK 373 (589)
Q Consensus 322 ~~g~~l~d~riv~~GAGsAg~GiA~ll~~~~~~~~G~s~eeA~~~i~~vD~~ 373 (589)
....+-...||+|+|||.||+..|..|.... .| -+|.++|+.
T Consensus 19 ~~~~~~~~~~VaIVGaGPAGl~AA~~L~~~~---~g-------~~Vtv~E~~ 60 (491)
T PLN02852 19 SSSSTSEPLHVCVVGSGPAGFYTADKLLKAH---DG-------ARVDIIERL 60 (491)
T ss_pred CCCCCCCCCcEEEECccHHHHHHHHHHHhhC---CC-------CeEEEEecC
Confidence 3444556789999999999999999886531 24 368888876
No 470
>TIGR03364 HpnW_proposed FAD dependent oxidoreductase TIGR03364. This clade of FAD dependent oxidoreductases (members of the pfam01266 family) is syntenically associated with a family of proposed phosphonatase-like enzymes (TIGR03351) and is also found (less frequently) in association with phosphonate transporter components. A likely role for this enzyme involves the oxidative deamination of an aminophosphonate differring slightly from 2-aminoethylphosphonate, possibly 1-hydroxy-2-aminoethylphosphonate (see the comments for TIGR03351). Many members of the larger FAD dependent oxidoreductase family act as amino acid oxidative deaminases.
Probab=38.50 E-value=36 Score=35.62 Aligned_cols=32 Identities=19% Similarity=0.262 Sum_probs=25.4
Q ss_pred eEEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEcccC
Q 007802 331 TFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKG 374 (589)
Q Consensus 331 riv~~GAGsAg~GiA~ll~~~~~~~~G~s~eeA~~~i~~vD~~G 374 (589)
.|+|+|||-+|+.+|-.|.+ .| .++.++|+..
T Consensus 2 dv~IIG~Gi~G~s~A~~L~~-----~G-------~~V~vle~~~ 33 (365)
T TIGR03364 2 DLIIVGAGILGLAHAYAAAR-----RG-------LSVTVIERSS 33 (365)
T ss_pred CEEEECCCHHHHHHHHHHHH-----CC-------CeEEEEeCCC
Confidence 48999999999999988864 25 3588888753
No 471
>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family. The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro
Probab=38.45 E-value=80 Score=30.53 Aligned_cols=46 Identities=28% Similarity=0.350 Sum_probs=28.5
Q ss_pred HHHHHHHhCCCCCCceEEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEccc
Q 007802 316 ILSALKLVGGTLADQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSK 373 (589)
Q Consensus 316 ll~Alr~~g~~l~d~riv~~GAGsAg~GiA~ll~~~~~~~~G~s~eeA~~~i~~vD~~ 373 (589)
.+.++...+.-..+++|+++|+|+.|..++++... .| .+++.++++
T Consensus 122 a~~~l~~~~~~~~~~~vli~g~~~~G~~~~~~a~~-----~g-------~~v~~~~~~ 167 (271)
T cd05188 122 AYHALRRAGVLKPGDTVLVLGAGGVGLLAAQLAKA-----AG-------ARVIVTDRS 167 (271)
T ss_pred HHHHHHhccCCCCCCEEEEECCCHHHHHHHHHHHH-----cC-------CeEEEEcCC
Confidence 33444445544578999999999866555543322 25 357777664
No 472
>PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated
Probab=38.45 E-value=41 Score=35.97 Aligned_cols=33 Identities=21% Similarity=0.399 Sum_probs=24.9
Q ss_pred CceEEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEccc
Q 007802 329 DQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSK 373 (589)
Q Consensus 329 d~riv~~GAGsAg~GiA~ll~~~~~~~~G~s~eeA~~~i~~vD~~ 373 (589)
..+|+|+|||.||+..|-.|.+ .|+ ++.++|+.
T Consensus 2 ~~dV~IvGaGpaGl~~A~~L~~-----~G~-------~v~v~E~~ 34 (392)
T PRK08243 2 RTQVAIIGAGPAGLLLGQLLHL-----AGI-------DSVVLERR 34 (392)
T ss_pred cceEEEECCCHHHHHHHHHHHh-----cCC-------CEEEEEcC
Confidence 3679999999999999987754 375 35566655
No 473
>PRK04663 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=38.43 E-value=1.2e+02 Score=33.33 Aligned_cols=117 Identities=17% Similarity=0.231 Sum_probs=63.0
Q ss_pred CCC-ceEEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEcccCcccCCcccCCchhchhhhcccCCCCCHHHHH
Q 007802 327 LAD-QTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLIVSSRKESLQHFKKPWAHEHAPIKSLLDAV 405 (589)
Q Consensus 327 l~d-~riv~~GAGsAg~GiA~ll~~~~~~~~G~s~eeA~~~i~~vD~~GLv~~~r~~~l~~~k~~fa~~~~~~~~L~e~V 405 (589)
+.. +||+|+|.|-.|++.+++|... .| .-++...|.+=. ....+.|.. ...+... ..+ .+.+
T Consensus 4 ~~~~~~v~viG~G~sG~s~~~~l~~~----~~------~~~v~~~D~~~~--~~~~~~l~~-g~~~~~g---~~~-~~~~ 66 (438)
T PRK04663 4 WQGIKNVVVVGLGITGLSVVKHLRKY----QP------QLTVKVIDTRET--PPGQEQLPE-DVELHSG---GWN-LEWL 66 (438)
T ss_pred ccCCceEEEEeccHHHHHHHHHHHhc----CC------CCeEEEEeCCCC--chhHHHhhc-CCEEEeC---CCC-hHHh
Confidence 445 6899999999999999998653 22 024777886421 000011211 1011100 011 1234
Q ss_pred hccCCcEEEeecCCCCCCCHHHHHHHHcCCCCcEEEecCCCCCCCCCCHHHHhccccCcEEEeeCCCCCcceeCCeee
Q 007802 406 KAIKPTMLMGTSGVGKTFTKEVVEAMASFNEKPVIFALSNPTSQSECTAEEAYTWSKGQAIFASGSPFDPVEYNGKVF 483 (589)
Q Consensus 406 ~~vkPtvLIG~S~~~g~Fteevv~~Ma~~~erPIIFaLSNPt~~~E~t~eda~~wT~GraifAsGSPf~pv~~~G~~~ 483 (589)
. ++|.+|=-++.+ --.+++.++.. ..-||+ +.+|. ++++.+.+.|-.||| ||||-
T Consensus 67 ~--~~d~vV~SpgI~-~~~p~~~~a~~--~gi~i~-------~~~el----~~~~~~~~~I~VTGT-------nGKTT 121 (438)
T PRK04663 67 L--EADLVVTNPGIA-LATPEIQQVLA--AGIPVV-------GDIEL----FAWAVDKPVIAITGS-------NGKST 121 (438)
T ss_pred c--cCCEEEECCCCC-CCCHHHHHHHH--CCCcEE-------EHHHH----HHhhcCCCEEEEeCC-------CCHHH
Confidence 3 378766444554 34677766655 356774 33333 233345678888997 67653
No 474
>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed
Probab=38.32 E-value=34 Score=36.17 Aligned_cols=33 Identities=15% Similarity=0.250 Sum_probs=25.9
Q ss_pred CceEEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEccc
Q 007802 329 DQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSK 373 (589)
Q Consensus 329 d~riv~~GAGsAg~GiA~ll~~~~~~~~G~s~eeA~~~i~~vD~~ 373 (589)
+..|+|+|||.||+..|-.|.+ .|+ ++.++|+.
T Consensus 5 ~~dViIvGgG~aGl~~A~~La~-----~G~-------~V~liE~~ 37 (391)
T PRK08020 5 PTDIAIVGGGMVGAALALGLAQ-----HGF-------SVAVLEHA 37 (391)
T ss_pred cccEEEECcCHHHHHHHHHHhc-----CCC-------EEEEEcCC
Confidence 4579999999999999977643 364 58888875
No 475
>PRK08013 oxidoreductase; Provisional
Probab=38.27 E-value=39 Score=36.29 Aligned_cols=33 Identities=12% Similarity=0.256 Sum_probs=25.0
Q ss_pred CceEEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEccc
Q 007802 329 DQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSK 373 (589)
Q Consensus 329 d~riv~~GAGsAg~GiA~ll~~~~~~~~G~s~eeA~~~i~~vD~~ 373 (589)
+-.|+|+|||.+|+..|-.|.. .|+ ++.++|++
T Consensus 3 ~~dV~IvGaGpaGl~~A~~La~-----~G~-------~v~viE~~ 35 (400)
T PRK08013 3 SVDVVIAGGGMVGLAVACGLQG-----SGL-------RVAVLEQR 35 (400)
T ss_pred cCCEEEECcCHHHHHHHHHHhh-----CCC-------EEEEEeCC
Confidence 3479999999999999977654 365 46677765
No 476
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=38.24 E-value=40 Score=41.55 Aligned_cols=34 Identities=15% Similarity=0.123 Sum_probs=27.8
Q ss_pred CCceEEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEccc
Q 007802 328 ADQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSK 373 (589)
Q Consensus 328 ~d~riv~~GAGsAg~GiA~ll~~~~~~~~G~s~eeA~~~i~~vD~~ 373 (589)
++.||+|+|||.||+..|..|.+. |. ++.++|+.
T Consensus 429 ~~~kVaIIG~GPAGLsaA~~La~~-----G~-------~VtV~E~~ 462 (1006)
T PRK12775 429 KLGKVAICGSGPAGLAAAADLVKY-----GV-------DVTVYEAL 462 (1006)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHc-----CC-------cEEEEecC
Confidence 468999999999999999988653 63 57778875
No 477
>PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A.
Probab=38.16 E-value=39 Score=37.08 Aligned_cols=33 Identities=27% Similarity=0.491 Sum_probs=22.9
Q ss_pred EEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEcccCcc
Q 007802 332 FLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLI 376 (589)
Q Consensus 332 iv~~GAGsAg~GiA~ll~~~~~~~~G~s~eeA~~~i~~vD~~GLv 376 (589)
|||+|+|.||+.-|-.... .| .++.|+++.+-+
T Consensus 2 VVVvGgG~aG~~AAi~AAr-----~G-------~~VlLiE~~~~l 34 (428)
T PF12831_consen 2 VVVVGGGPAGVAAAIAAAR-----AG-------AKVLLIEKGGFL 34 (428)
T ss_dssp EEEE--SHHHHHHHHHHHH-----TT-------S-EEEE-SSSSS
T ss_pred EEEECccHHHHHHHHHHHH-----CC-------CEEEEEECCccC
Confidence 7999999999988876544 37 468999998865
No 478
>cd00529 RuvC_resolvase Holliday junction resolvases (HJRs) are endonucleases that specifically resolve Holliday junction DNA intermediates during homologous recombination. HJR's occur in archaea, bacteria, and in the mitochondria of certain fungi, however this CD includes only the bacterial and mitochondrial HJR's. These are referred to as the RuvC family of Holliday junction resolvases, RuvC being the E.coli HJR. RuvC and its orthologs are homodimers and are structurely similar to RNase H and Hsp70.
Probab=38.12 E-value=1.9e+02 Score=27.53 Aligned_cols=72 Identities=14% Similarity=0.137 Sum_probs=40.7
Q ss_pred hhhHHHHHHHHHHHHHHhcCCceeeEeec-CCCccHHHHHHHHcCCCceeccCCCchHHHHHHHHHHHHHHhCCCCC---
Q 007802 253 GQEYAELLQEFMTAVKQNYGEKVLIQFED-FANHNAFELLSKYSSSHLVFNDDIQGTASVVLAGILSALKLVGGTLA--- 328 (589)
Q Consensus 253 g~~y~~fidefv~av~~~fGp~~lIq~ED-f~~~~Af~iL~ryr~~~~~FnDDiQGTaaV~lAgll~Alr~~g~~l~--- 328 (589)
.+....+.+++.+ +...|-|+ .+-.|+ |-+.|.-..+.- .-+-..++.++...|.++.
T Consensus 41 ~~rl~~I~~~l~~-~i~~~~Pd-~vaiE~~~~~~n~~s~~~l----------------~~~~Gvi~~~~~~~~i~v~e~~ 102 (154)
T cd00529 41 PSRLKTIYDGLNE-VIDQFQPD-VVAIERVFFAKNPDSALKL----------------GQARGALILALANRNLPVFEYT 102 (154)
T ss_pred HHHHHHHHHHHHH-HHHHhCCC-EEEEEEhhcccChHHHHHH----------------HHHHHHHHHHHHHcCCCEEEEc
Confidence 4445554444444 44578786 567888 334443222111 1134455666666676654
Q ss_pred --CceEEEeCcChHHH
Q 007802 329 --DQTFLFLGAGEAGT 342 (589)
Q Consensus 329 --d~riv~~GAGsAg~ 342 (589)
..|-.+.|.|.|.-
T Consensus 103 P~~vKk~~tG~G~A~K 118 (154)
T cd00529 103 PNQVKKAVTGYGKADK 118 (154)
T ss_pred cCeeEEEEECCCCCCH
Confidence 45777889998865
No 479
>PRK13937 phosphoheptose isomerase; Provisional
Probab=38.09 E-value=1.2e+02 Score=29.67 Aligned_cols=22 Identities=27% Similarity=0.480 Sum_probs=18.0
Q ss_pred CCcEEEeecCCCCCCCHHHHHHHH
Q 007802 409 KPTMLMGTSGVGKTFTKEVVEAMA 432 (589)
Q Consensus 409 kPtvLIG~S~~~g~Fteevv~~Ma 432 (589)
+-|++|++|..|. |+++++.+.
T Consensus 106 ~~Dl~i~iS~sG~--t~~~~~~~~ 127 (188)
T PRK13937 106 PGDVLIGISTSGN--SPNVLAALE 127 (188)
T ss_pred CCCEEEEEeCCCC--cHHHHHHHH
Confidence 4699999998774 899988765
No 480
>PRK09242 tropinone reductase; Provisional
Probab=38.04 E-value=1.5e+02 Score=29.24 Aligned_cols=37 Identities=35% Similarity=0.390 Sum_probs=23.4
Q ss_pred CCCCceEEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEccc
Q 007802 326 TLADQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSK 373 (589)
Q Consensus 326 ~l~d~riv~~GAGsAg~GiA~ll~~~~~~~~G~s~eeA~~~i~~vD~~ 373 (589)
.+++++++|.||++ ||...++..+.+ .|. ++++++++
T Consensus 6 ~~~~k~~lItGa~~---gIG~~~a~~l~~-~G~-------~v~~~~r~ 42 (257)
T PRK09242 6 RLDGQTALITGASK---GIGLAIAREFLG-LGA-------DVLIVARD 42 (257)
T ss_pred ccCCCEEEEeCCCc---hHHHHHHHHHHH-cCC-------EEEEEeCC
Confidence 46788999999743 344444444443 363 58888874
No 481
>COG0562 Glf UDP-galactopyranose mutase [Cell envelope biogenesis, outer membrane]
Probab=38.01 E-value=38 Score=37.13 Aligned_cols=32 Identities=34% Similarity=0.620 Sum_probs=25.0
Q ss_pred eEEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEcccC
Q 007802 331 TFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKG 374 (589)
Q Consensus 331 riv~~GAGsAg~GiA~ll~~~~~~~~G~s~eeA~~~i~~vD~~G 374 (589)
+++|+|||-+|.=||+.+.+ .| |++.+||+.-
T Consensus 3 d~lIVGaGlsG~V~A~~a~~-----~g-------k~VLIvekR~ 34 (374)
T COG0562 3 DYLIVGAGLSGAVIAEVAAQ-----LG-------KRVLIVEKRN 34 (374)
T ss_pred cEEEECCchhHHHHHHHHHH-----cC-------CEEEEEeccc
Confidence 58999999999999994332 35 7888888753
No 482
>PLN02568 polyamine oxidase
Probab=37.98 E-value=19 Score=41.18 Aligned_cols=24 Identities=25% Similarity=0.368 Sum_probs=20.8
Q ss_pred CCceEEEeCcChHHHHHHHHHHHH
Q 007802 328 ADQTFLFLGAGEAGTGIAELIALE 351 (589)
Q Consensus 328 ~d~riv~~GAGsAg~GiA~ll~~~ 351 (589)
+..+|+|+|||.||+..|..|...
T Consensus 4 ~~~~v~iiGaG~aGl~aa~~L~~~ 27 (539)
T PLN02568 4 KKPRIVIIGAGMAGLTAANKLYTS 27 (539)
T ss_pred CCCcEEEECCCHHHHHHHHHHHhc
Confidence 346899999999999999999764
No 483
>TIGR01862 N2-ase-Ialpha nitrogenase component I, alpha chain. This model represents the alpha chain of all three varieties (Mo-Fe, V-Fe, and Fe-Fe) of component I of nitrogenase.
Probab=37.83 E-value=95 Score=34.57 Aligned_cols=85 Identities=9% Similarity=0.062 Sum_probs=44.5
Q ss_pred HHHHhCCCCCCceEEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEcccCcccCCcccCCchhchhhhcc----
Q 007802 319 ALKLVGGTLADQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLIVSSRKESLQHFKKPWAHE---- 394 (589)
Q Consensus 319 Alr~~g~~l~d~riv~~GAGsAg~GiA~ll~~~~~~~~G~s~eeA~~~i~~vD~~GLv~~~r~~~l~~~k~~fa~~---- 394 (589)
.+.-....|.+.|+++++.+.-..++++.++. +.|+. +..+ |.-+..+ +.+.+..+.+...
T Consensus 307 ~l~~~~~~l~gkrvai~~~~~~~~~~~~~ll~----elGm~-------v~~~---~~~~~~~-~~~~~~l~~l~~~~~~v 371 (443)
T TIGR01862 307 ELDYYKERLQGKRVCLYIGGSRLWHWIGSAEE----DLGME-------VVAV---GYEFAHE-DDYEKTMKRMGEGTLLI 371 (443)
T ss_pred HHHHHHHHhcCCeEEEECCchhHHHHHHHHHH----HCCCE-------EEEe---ccccccH-HHHHHHHHhCCCceEEe
Confidence 33344567888999998877777777773333 24873 2222 1111111 1122221111111
Q ss_pred -cCCCCCHHHHHhccCCcEEEeecC
Q 007802 395 -HAPIKSLLDAVKAIKPTMLMGTSG 418 (589)
Q Consensus 395 -~~~~~~L~e~V~~vkPtvLIG~S~ 418 (589)
..+...+++.++..+||.|||-|-
T Consensus 372 ~~~~~~e~~~~i~~~~pdllig~s~ 396 (443)
T TIGR01862 372 DDPNELEFEEILEKLKPDIIFSGIK 396 (443)
T ss_pred cCCCHHHHHHHHHhcCCCEEEEcCc
Confidence 111124566688899999998764
No 484
>PRK08265 short chain dehydrogenase; Provisional
Probab=37.81 E-value=43 Score=33.36 Aligned_cols=37 Identities=22% Similarity=0.281 Sum_probs=24.6
Q ss_pred CCCCceEEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEccc
Q 007802 326 TLADQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSK 373 (589)
Q Consensus 326 ~l~d~riv~~GAGsAg~GiA~ll~~~~~~~~G~s~eeA~~~i~~vD~~ 373 (589)
+++++++||.||.+ ||...|+..+.+ .|. +++++|++
T Consensus 3 ~~~~k~vlItGas~---gIG~~ia~~l~~-~G~-------~V~~~~r~ 39 (261)
T PRK08265 3 GLAGKVAIVTGGAT---LIGAAVARALVA-AGA-------RVAIVDID 39 (261)
T ss_pred CCCCCEEEEECCCC---hHHHHHHHHHHH-CCC-------EEEEEeCC
Confidence 47889999999743 455555555544 363 68888764
No 485
>PRK11445 putative oxidoreductase; Provisional
Probab=37.75 E-value=30 Score=36.54 Aligned_cols=20 Identities=35% Similarity=0.594 Sum_probs=17.3
Q ss_pred eEEEeCcChHHHHHHHHHHH
Q 007802 331 TFLFLGAGEAGTGIAELIAL 350 (589)
Q Consensus 331 riv~~GAGsAg~GiA~ll~~ 350 (589)
.|+|+|||.||...|..|..
T Consensus 3 dV~IvGaGpaGl~~A~~La~ 22 (351)
T PRK11445 3 DVAIIGLGPAGSALARLLAG 22 (351)
T ss_pred eEEEECCCHHHHHHHHHHhc
Confidence 58999999999999987643
No 486
>PRK00414 gmhA phosphoheptose isomerase; Reviewed
Probab=37.74 E-value=1.6e+02 Score=29.05 Aligned_cols=35 Identities=20% Similarity=0.305 Sum_probs=23.3
Q ss_pred CCcEEEeecCCCCCCCHHHHHHHHc--CCCCcEEEecCC
Q 007802 409 KPTMLMGTSGVGKTFTKEVVEAMAS--FNEKPVIFALSN 445 (589)
Q Consensus 409 kPtvLIG~S~~~g~Fteevv~~Ma~--~~erPIIFaLSN 445 (589)
+-|++|++|..| -|+++++.+.. ...-|+|-=-+|
T Consensus 111 ~~Dv~I~iS~SG--~t~~~i~~~~~ak~~g~~iI~iT~~ 147 (192)
T PRK00414 111 EGDVLLGISTSG--NSGNIIKAIEAARAKGMKVITLTGK 147 (192)
T ss_pred CCCEEEEEeCCC--CCHHHHHHHHHHHHCCCeEEEEeCC
Confidence 569999999977 59999887752 233444443333
No 487
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=37.71 E-value=32 Score=38.30 Aligned_cols=35 Identities=29% Similarity=0.448 Sum_probs=27.5
Q ss_pred CceEEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEccc
Q 007802 329 DQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSK 373 (589)
Q Consensus 329 d~riv~~GAGsAg~GiA~ll~~~~~~~~G~s~eeA~~~i~~vD~~ 373 (589)
.+||||+|+|-+|+-.|..+.... . .-+|.+||++
T Consensus 3 ~~~iVIlGgGfgGl~~a~~l~~~~-~---------~~~itLVd~~ 37 (405)
T COG1252 3 KKRIVILGGGFGGLSAAKRLARKL-P---------DVEITLVDRR 37 (405)
T ss_pred CceEEEECCcHHHHHHHHHhhhcC-C---------CCcEEEEeCC
Confidence 579999999999999999886542 1 2358889885
No 488
>PLN02657 3,8-divinyl protochlorophyllide a 8-vinyl reductase
Probab=37.63 E-value=1.6e+02 Score=31.98 Aligned_cols=109 Identities=15% Similarity=0.148 Sum_probs=58.4
Q ss_pred HhCCCCCCceEEEeCc-ChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEcccCcccCCc--ccCCch-h-chhhhc-cc
Q 007802 322 LVGGTLADQTFLFLGA-GEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLIVSSR--KESLQH-F-KKPWAH-EH 395 (589)
Q Consensus 322 ~~g~~l~d~riv~~GA-GsAg~GiA~ll~~~~~~~~G~s~eeA~~~i~~vD~~GLv~~~r--~~~l~~-~-k~~fa~-~~ 395 (589)
-.++..+++||+|.|| |-.|..+++.|++ .| -+++.++++.--.... ...+.. . ...+.. +-
T Consensus 53 ~~~~~~~~~kVLVtGatG~IG~~l~~~Ll~-----~G-------~~V~~l~R~~~~~~~~~~~~~~~~~~~~v~~v~~Dl 120 (390)
T PLN02657 53 FRSKEPKDVTVLVVGATGYIGKFVVRELVR-----RG-------YNVVAVAREKSGIRGKNGKEDTKKELPGAEVVFGDV 120 (390)
T ss_pred ccccCCCCCEEEEECCCcHHHHHHHHHHHH-----CC-------CEEEEEEechhhccccchhhHHhhhcCCceEEEeeC
Confidence 3456778899999997 7778888887754 25 3577777653100000 000000 0 011111 11
Q ss_pred CCCCCHHHHHhcc--CCcEEEeecCCC-C----CC------CHHHHHHHHcCCCCcEEEe
Q 007802 396 APIKSLLDAVKAI--KPTMLMGTSGVG-K----TF------TKEVVEAMASFNEKPVIFA 442 (589)
Q Consensus 396 ~~~~~L~e~V~~v--kPtvLIG~S~~~-g----~F------teevv~~Ma~~~erPIIFa 442 (589)
.+..++.++++.. ++|++|=+.+.. + .+ +..+++++.+..-+-+|+.
T Consensus 121 ~d~~~l~~~~~~~~~~~D~Vi~~aa~~~~~~~~~~~vn~~~~~~ll~aa~~~gv~r~V~i 180 (390)
T PLN02657 121 TDADSLRKVLFSEGDPVDVVVSCLASRTGGVKDSWKIDYQATKNSLDAGREVGAKHFVLL 180 (390)
T ss_pred CCHHHHHHHHHHhCCCCcEEEECCccCCCCCccchhhHHHHHHHHHHHHHHcCCCEEEEE
Confidence 2224677778765 699998544322 1 11 3456777765554556663
No 489
>COG1086 Predicted nucleoside-diphosphate sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]
Probab=37.56 E-value=62 Score=37.68 Aligned_cols=77 Identities=17% Similarity=0.218 Sum_probs=51.0
Q ss_pred CCCCCceEEEeCc-ChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEcccCcccCCcccCCchhchhhhc----------
Q 007802 325 GTLADQTFLFLGA-GEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLIVSSRKESLQHFKKPWAH---------- 393 (589)
Q Consensus 325 ~~l~d~riv~~GA-GsAg~GiA~ll~~~~~~~~G~s~eeA~~~i~~vD~~GLv~~~r~~~l~~~k~~fa~---------- 393 (589)
.-+++++|++-|| ||.|-.++++|+.. + .++|.++|++=. ++..-.++|.+
T Consensus 246 ~~~~gK~vLVTGagGSiGsel~~qil~~-----~------p~~i~l~~~~E~-------~~~~i~~el~~~~~~~~~~~~ 307 (588)
T COG1086 246 AMLTGKTVLVTGGGGSIGSELCRQILKF-----N------PKEIILFSRDEY-------KLYLIDMELREKFPELKLRFY 307 (588)
T ss_pred hHcCCCEEEEeCCCCcHHHHHHHHHHhc-----C------CCEEEEecCchH-------HHHHHHHHHHhhCCCcceEEE
Confidence 3467899999987 57788888877653 3 378999987521 22222233322
Q ss_pred --ccCCCCCHHHHHhccCCcEEEeecCC
Q 007802 394 --EHAPIKSLLDAVKAIKPTMLMGTSGV 419 (589)
Q Consensus 394 --~~~~~~~L~e~V~~vkPtvLIG~S~~ 419 (589)
+-.+...+.++++..|||+++=+.+-
T Consensus 308 igdVrD~~~~~~~~~~~kvd~VfHAAA~ 335 (588)
T COG1086 308 IGDVRDRDRVERAMEGHKVDIVFHAAAL 335 (588)
T ss_pred ecccccHHHHHHHHhcCCCceEEEhhhh
Confidence 11222469999999999999977653
No 490
>PRK07326 short chain dehydrogenase; Provisional
Probab=37.54 E-value=1e+02 Score=29.71 Aligned_cols=35 Identities=23% Similarity=0.261 Sum_probs=24.4
Q ss_pred CCCceEEEeCc-ChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEccc
Q 007802 327 LADQTFLFLGA-GEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSK 373 (589)
Q Consensus 327 l~d~riv~~GA-GsAg~GiA~ll~~~~~~~~G~s~eeA~~~i~~vD~~ 373 (589)
+.+.+++|.|| |..|..+++.+.. .|. ++++++++
T Consensus 4 ~~~~~ilItGatg~iG~~la~~l~~-----~g~-------~V~~~~r~ 39 (237)
T PRK07326 4 LKGKVALITGGSKGIGFAIAEALLA-----EGY-------KVAITARD 39 (237)
T ss_pred CCCCEEEEECCCCcHHHHHHHHHHH-----CCC-------EEEEeeCC
Confidence 45789999997 6677777776643 353 58888775
No 491
>PRK07538 hypothetical protein; Provisional
Probab=37.41 E-value=39 Score=36.42 Aligned_cols=20 Identities=25% Similarity=0.355 Sum_probs=16.3
Q ss_pred eEEEeCcChHHHHHHHHHHH
Q 007802 331 TFLFLGAGEAGTGIAELIAL 350 (589)
Q Consensus 331 riv~~GAGsAg~GiA~ll~~ 350 (589)
+|+|+|||.||+..|-.|.+
T Consensus 2 dV~IVGaG~aGl~~A~~L~~ 21 (413)
T PRK07538 2 KVLIAGGGIGGLTLALTLHQ 21 (413)
T ss_pred eEEEECCCHHHHHHHHHHHh
Confidence 68899999999888877654
No 492
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=37.30 E-value=49 Score=36.85 Aligned_cols=34 Identities=24% Similarity=0.447 Sum_probs=26.9
Q ss_pred CCceEEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEccc
Q 007802 328 ADQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSK 373 (589)
Q Consensus 328 ~d~riv~~GAGsAg~GiA~ll~~~~~~~~G~s~eeA~~~i~~vD~~ 373 (589)
+..+|+|+|+|.||+..|..+.. .|. ++.++|+.
T Consensus 140 ~~~~V~IIG~GpaGl~aA~~l~~-----~G~-------~V~i~e~~ 173 (467)
T TIGR01318 140 TGKRVAVIGAGPAGLACADILAR-----AGV-------QVVVFDRH 173 (467)
T ss_pred CCCeEEEECCCHHHHHHHHHHHH-----cCC-------eEEEEecC
Confidence 67899999999999999888754 263 47777765
No 493
>PRK09466 metL bifunctional aspartate kinase II/homoserine dehydrogenase II; Provisional
Probab=36.70 E-value=96 Score=37.55 Aligned_cols=108 Identities=18% Similarity=0.157 Sum_probs=65.4
Q ss_pred CCceEEEeCcChHHHHHHHHHHHH---HHhccCCCHHhhcCeEEEEcccCcccCCcccCCchhchhhhcc--cCCCCCHH
Q 007802 328 ADQTFLFLGAGEAGTGIAELIALE---MSKQTKAPIEEARKKIWLVDSKGLIVSSRKESLQHFKKPWAHE--HAPIKSLL 402 (589)
Q Consensus 328 ~d~riv~~GAGsAg~GiA~ll~~~---~~~~~G~s~eeA~~~i~~vD~~GLv~~~r~~~l~~~k~~fa~~--~~~~~~L~ 402 (589)
+..+|.++|-|..|.|++++|.+. +.++.|+.. +=.-+.|+++.+.+.+.-++......|... ..+...+.
T Consensus 457 ~~i~i~l~G~G~VG~~l~~~l~~~~~~l~~~~g~~~----~v~~I~~s~~~~~~~~gi~~~~~~~~~~~~~~~~~~~~~~ 532 (810)
T PRK09466 457 KRIGLVLFGKGNIGSRWLELFAREQSTLSARTGFEF----VLVGVVDSRRSLLNYDGLDASRALAFFDDEAVEWDEESLF 532 (810)
T ss_pred ceEEEEEEecCCChHHHHHHHHHHHHHHHHhcCCCE----EEEEEEeCCccccCccCCCHHHHHhhHHhhcCCccHHHHH
Confidence 346899999999999999999763 222234321 124467999888776531222233233321 12334567
Q ss_pred HHHhccCCc--EEEeecCCCCCCCHHHHHHHHcCCCCcEEEe
Q 007802 403 DAVKAIKPT--MLMGTSGVGKTFTKEVVEAMASFNEKPVIFA 442 (589)
Q Consensus 403 e~V~~vkPt--vLIG~S~~~g~Fteevv~~Ma~~~erPIIFa 442 (589)
|.+....++ |+|=+++.. -....+.+++. +...+|-|
T Consensus 533 e~i~~~~~~~~vvVd~t~~~-~~~~~~~~aL~--~G~~VVta 571 (810)
T PRK09466 533 LWLRAHPYDELVVLDVTASE-QLALQYPDFAS--HGFHVISA 571 (810)
T ss_pred HHHhhcCCCCcEEEECCCCh-HHHHHHHHHHH--cCCEEEcC
Confidence 777766665 888888633 34456667776 35666654
No 494
>PRK14477 bifunctional nitrogenase molybdenum-cofactor biosynthesis protein NifE/NifN; Provisional
Probab=36.62 E-value=64 Score=39.46 Aligned_cols=83 Identities=16% Similarity=0.258 Sum_probs=49.2
Q ss_pred HHHHHHHhCCCCCCceEEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEcccCcccCCcccCCchhc--hhhhc
Q 007802 316 ILSALKLVGGTLADQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLIVSSRKESLQHFK--KPWAH 393 (589)
Q Consensus 316 ll~Alr~~g~~l~d~riv~~GAGsAg~GiA~ll~~~~~~~~G~s~eeA~~~i~~vD~~GLv~~~r~~~l~~~k--~~fa~ 393 (589)
+.-++......|++.|++|+|.+.-..++++.|.+ .|+.. ..+-.+ ... ..++. +.+..
T Consensus 307 ~~~~l~~~~~~L~GKrv~i~~g~~~~~~la~~l~e-----lGmev-------v~~g~~---~~~----~~d~~~~~~~~~ 367 (917)
T PRK14477 307 CRAALAPYRARLEGKRVVLFTGGVKTWSMVNALRE-----LGVEV-------LAAGTQ---NST----LEDFARMKALMH 367 (917)
T ss_pred HHHHHHHHHHHccCCEEEEECCCchHHHHHHHHHH-----CCCEE-------EEEcCC---CCC----HHHHHHHHHhcC
Confidence 34455555678999999999999888898887754 47632 111111 000 11111 11111
Q ss_pred ------ccCCCCCHHHHHhccCCcEEEeec
Q 007802 394 ------EHAPIKSLLDAVKAIKPTMLMGTS 417 (589)
Q Consensus 394 ------~~~~~~~L~e~V~~vkPtvLIG~S 417 (589)
+..+...|.+.++..|||.+||-|
T Consensus 368 ~~~~vi~~~d~~el~~~i~~~~pDLlig~~ 397 (917)
T PRK14477 368 KDAHIIEDTSTAGLLRVMREKMPDLIVAGG 397 (917)
T ss_pred CCCEEEECCCHHHHHHHHHhcCCCEEEecC
Confidence 112223578899999999999955
No 495
>PRK06834 hypothetical protein; Provisional
Probab=36.61 E-value=44 Score=37.44 Aligned_cols=35 Identities=20% Similarity=0.407 Sum_probs=27.7
Q ss_pred CCceEEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEcccC
Q 007802 328 ADQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKG 374 (589)
Q Consensus 328 ~d~riv~~GAGsAg~GiA~ll~~~~~~~~G~s~eeA~~~i~~vD~~G 374 (589)
.+..|+|+|||.+|+-.|-.|.. .|+ ++.++|+.-
T Consensus 2 ~~~dVlIVGaGp~Gl~lA~~La~-----~G~-------~v~vlEr~~ 36 (488)
T PRK06834 2 TEHAVVIAGGGPTGLMLAGELAL-----AGV-------DVAIVERRP 36 (488)
T ss_pred CcceEEEECCCHHHHHHHHHHHH-----CCC-------cEEEEecCC
Confidence 46789999999999999988865 375 477788764
No 496
>TIGR03325 BphB_TodD cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase. Members of this family occur as the BphD protein of biphenyl catabolism and as the TodD protein of toluene catabolism. Members catalyze the second step in each pathway and proved interchangeable when tested; the first and fourth enzymes in each pathway confer metabolic specificity. In the context of biphenyl degradation, the enzyme acts as cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase (EC 1.3.1.56), while in toluene degradation it acts as cis-toluene dihydrodiol dehydrogenase.
Probab=36.32 E-value=43 Score=33.24 Aligned_cols=36 Identities=19% Similarity=0.361 Sum_probs=23.0
Q ss_pred CCCCceEEEeCcCh-HHHHHHHHHHHHHHhccCCCHHhhcCeEEEEccc
Q 007802 326 TLADQTFLFLGAGE-AGTGIAELIALEMSKQTKAPIEEARKKIWLVDSK 373 (589)
Q Consensus 326 ~l~d~riv~~GAGs-Ag~GiA~ll~~~~~~~~G~s~eeA~~~i~~vD~~ 373 (589)
++++.++||.||+. .|..+|+.+. + +|. +++++|++
T Consensus 2 ~~~~k~vlItGas~gIG~~ia~~l~----~-~G~-------~V~~~~r~ 38 (262)
T TIGR03325 2 RLKGEVVLVTGGASGLGRAIVDRFV----A-EGA-------RVAVLDKS 38 (262)
T ss_pred CcCCcEEEEECCCChHHHHHHHHHH----H-CCC-------EEEEEeCC
Confidence 46788999999743 4445555543 3 363 57777764
No 497
>KOG3851 consensus Sulfide:quinone oxidoreductase/flavo-binding protein [Energy production and conversion]
Probab=36.30 E-value=26 Score=38.40 Aligned_cols=138 Identities=22% Similarity=0.349 Sum_probs=73.6
Q ss_pred CCceEEEeCcChHHHHHHHHHHHHHHhccCCCHHh-h----cCeEEEEcccCccc--CCcc--cCCchhchhhhcc----
Q 007802 328 ADQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEE-A----RKKIWLVDSKGLIV--SSRK--ESLQHFKKPWAHE---- 394 (589)
Q Consensus 328 ~d~riv~~GAGsAg~GiA~ll~~~~~~~~G~s~ee-A----~~~i~~vD~~GLv~--~~r~--~~l~~~k~~fa~~---- 394 (589)
+..++|++|.|++|+|+|..+..-+-+. -+-.-| + .+-.|-.=--||-. ++|. .+|-+-...|.++
T Consensus 38 ~h~kvLVvGGGsgGi~~A~k~~rkl~~g-~vgIvep~e~HyYQPgfTLvGgGl~~l~~srr~~a~liP~~a~wi~ekv~~ 116 (446)
T KOG3851|consen 38 KHFKVLVVGGGSGGIGMAAKFYRKLGSG-SVGIVEPAEDHYYQPGFTLVGGGLKSLDSSRRKQASLIPKGATWIKEKVKE 116 (446)
T ss_pred cceEEEEEcCCcchhHHHHHHHhhcCCC-ceEEecchhhcccCcceEEeccchhhhhhccCcccccccCCcHHHHHHHHh
Confidence 5689999999999999999987754221 111111 1 11234333334432 2221 1233333333321
Q ss_pred ------------c------------------CCCCCHHHHHhccCCcEEEeecCCCCCC-CHHHHHHHHcCCCCcEEEec
Q 007802 395 ------------H------------------APIKSLLDAVKAIKPTMLMGTSGVGKTF-TKEVVEAMASFNEKPVIFAL 443 (589)
Q Consensus 395 ------------~------------------~~~~~L~e~V~~vkPtvLIG~S~~~g~F-teevv~~Ma~~~erPIIFaL 443 (589)
+ ..++.|.|+.+. | |+.+.=.-| -+.+-++.-..++---||..
T Consensus 117 f~P~~N~v~t~gg~eIsYdylviA~Giql~y~~IkGl~Eal~t--P----~VcSnYSpkyvdk~y~~~~~fk~GNAIfTf 190 (446)
T KOG3851|consen 117 FNPDKNTVVTRGGEEISYDYLVIAMGIQLDYGKIKGLVEALDT--P----GVCSNYSPKYVDKVYKELMNFKKGNAIFTF 190 (446)
T ss_pred cCCCcCeEEccCCcEEeeeeEeeeeeceeccchhcChHhhccC--C----CcccccChHHHHHHHHHHHhccCCceEEec
Confidence 0 112478899887 7 443322122 23344555566778889999
Q ss_pred CCCCCCCCCCHHHHh-------cc----ccCcEEEeeCCC
Q 007802 444 SNPTSQSECTAEEAY-------TW----SKGQAIFASGSP 472 (589)
Q Consensus 444 SNPt~~~E~t~eda~-------~w----T~GraifAsGSP 472 (589)
-|-.-||-=-|+.+. +. .+-..||+|+-|
T Consensus 191 PntpiKCAGAPQKi~yise~y~Rk~gvRd~a~iiy~Tsl~ 230 (446)
T KOG3851|consen 191 PNTPIKCAGAPQKIMYISESYFRKRGVRDNANIIYNTSLP 230 (446)
T ss_pred CCCccccCCCchhhhhhhHHHHHHhCccccccEEEecCcc
Confidence 884444544444332 21 334578999866
No 498
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=36.27 E-value=41 Score=36.76 Aligned_cols=34 Identities=26% Similarity=0.416 Sum_probs=27.4
Q ss_pred CceEEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEcccC
Q 007802 329 DQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKG 374 (589)
Q Consensus 329 d~riv~~GAGsAg~GiA~ll~~~~~~~~G~s~eeA~~~i~~vD~~G 374 (589)
.-.++|+|||.||+..|..+.+. | .++.++|++.
T Consensus 5 ~yDvvVIGaGpaG~~aA~~la~~-----G-------~~v~liE~~~ 38 (461)
T PRK05249 5 DYDLVVIGSGPAGEGAAMQAAKL-----G-------KRVAVIERYR 38 (461)
T ss_pred cccEEEECCCHHHHHHHHHHHhC-----C-------CEEEEEeccc
Confidence 35699999999999999887552 5 5799999863
No 499
>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []. Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....
Probab=35.89 E-value=31 Score=39.47 Aligned_cols=21 Identities=24% Similarity=0.377 Sum_probs=0.0
Q ss_pred ceEEEeCcChHHHHHHHHHHH
Q 007802 330 QTFLFLGAGEAGTGIAELIAL 350 (589)
Q Consensus 330 ~riv~~GAGsAg~GiA~ll~~ 350 (589)
.||.|+|||.+|+..|+.|.+
T Consensus 2 krVaVIGaG~sGL~a~k~l~e 22 (531)
T PF00743_consen 2 KRVAVIGAGPSGLAAAKNLLE 22 (531)
T ss_dssp -EEEEE--SHHHHHHHHHHHH
T ss_pred CEEEEECccHHHHHHHHHHHH
No 500
>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated
Probab=35.88 E-value=45 Score=35.75 Aligned_cols=33 Identities=15% Similarity=0.368 Sum_probs=25.4
Q ss_pred CceEEEeCcChHHHHHHHHHHHHHHhccCCCHHhhcCeEEEEccc
Q 007802 329 DQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSK 373 (589)
Q Consensus 329 d~riv~~GAGsAg~GiA~ll~~~~~~~~G~s~eeA~~~i~~vD~~ 373 (589)
...|+|+|||.+|+..|-.|.. .|+ ++.++|+.
T Consensus 4 ~~dV~IvGaG~~Gl~~A~~L~~-----~G~-------~v~viE~~ 36 (405)
T PRK08850 4 SVDVAIIGGGMVGLALAAALKE-----SDL-------RIAVIEGQ 36 (405)
T ss_pred cCCEEEECccHHHHHHHHHHHh-----CCC-------EEEEEcCC
Confidence 3579999999999999977644 375 47777774
Done!