Your job contains 1 sequence.
>007803
MVWGLFPIDPLPGEDKYYIFSKGNYKVGRKGCDIIINKDKGVSRVHAEILVDEMISLNPF
QDKSSKVSTTRVRIKDCSKYGTFINKNLGSKEKVHEFPNKEATLKDGDLVSFGTGNATYR
FCYAPLILFVDSFQVNAPLQEKVSSIGAFITSKFCQECTHILVQHHMRVKGELLDAIVAK
KPLVDVSWLEVVAEKSIRTDFPGCNSHVTTLIMEGDPVELANVDTLENCMRGYTFLLDSS
MKYKYGDQLQSLLEVSGAKTLSIESFCPSSQDSECVEHNSVVYVLPRKSEDCSKSILKLS
SLSRVNEKDLICAVLSGHLDPSVLISPSPPVLISSSCSTDETVVADSDAETEEETSPGHA
TAAVDNEEAPTYLSKEEISINHAVNRSDNQHETGLRDGNSSIAYRSADIHGADRSEASHG
ADFGDGYSCTANRLEDSHCAGFRDGSNSIANRSEDRRGTGFRDGNNCMTTSREKADLERE
NSDIIYSQNLVVRDLNVASTISSTANNGVLNFKRFRKTNIQSGNSFSSLIPFSKYPYKDS
DNGTEEMAVSMKEEKKRKQMEALAEDMFNSAKGKRRGVAGTIYGLLSRK
The BLAST search returned 1 gene product which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 007803
(589 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2076934 - symbol:NBS1 "AT3G02680" species:3702... 890 4.5e-122 2
UNIPROTKB|Q6XV80 - symbol:nbn "NBS1" species:8355 "Xenopu... 215 1.9e-18 3
UNIPROTKB|Q6EKW1 - symbol:NBS1 "Recombination and DNA rep... 216 2.3e-18 3
MGI|MGI:1351625 - symbol:Nbn "nibrin" species:10090 "Mus ... 233 2.8e-18 2
UNIPROTKB|Q9DE07 - symbol:NBN "Nibrin" species:9031 "Gall... 221 2.3e-17 2
UNIPROTKB|F1NX19 - symbol:NBN "Nibrin" species:9031 "Gall... 221 3.0e-17 2
UNIPROTKB|Q5RCV3 - symbol:NBN "Nibrin" species:9601 "Pong... 231 3.2e-17 2
UNIPROTKB|F6PSE2 - symbol:NBN "Uncharacterized protein" s... 221 6.1e-17 2
RGD|621420 - symbol:Nbn "nibrin" species:10116 "Rattus no... 219 5.4e-16 2
UNIPROTKB|F1RXF2 - symbol:NBN "Uncharacterized protein" s... 221 7.1e-16 1
UNIPROTKB|O60934 - symbol:NBN "Nibrin" species:9606 "Homo... 223 8.2e-16 2
UNIPROTKB|Q641A9 - symbol:LOC403373 "LOC403373 protein" s... 216 2.0e-14 1
FB|FBgn0261530 - symbol:nbs "nbs" species:7227 "Drosophil... 162 8.0e-08 3
ZFIN|ZDB-GENE-041008-35 - symbol:nbn "nibrin" species:795... 139 5.7e-07 3
UNIPROTKB|E5RGN7 - symbol:NBN "Nibrin" species:9606 "Homo... 113 9.6e-06 1
UNIPROTKB|E5RGR7 - symbol:NBN "Nibrin" species:9606 "Homo... 117 2.1e-05 1
>TAIR|locus:2076934 [details] [associations]
symbol:NBS1 "AT3G02680" species:3702 "Arabidopsis
thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005634
"nucleus" evidence=ISM] [GO:0007129 "synapsis" evidence=IGI;RCA]
[GO:0007131 "reciprocal meiotic recombination" evidence=IGI;RCA]
[GO:0000003 "reproduction" evidence=RCA] [GO:0000724 "double-strand
break repair via homologous recombination" evidence=RCA]
[GO:0000911 "cytokinesis by cell plate formation" evidence=RCA]
[GO:0006259 "DNA metabolic process" evidence=RCA] [GO:0006302
"double-strand break repair" evidence=RCA] [GO:0006310 "DNA
recombination" evidence=RCA] [GO:0006312 "mitotic recombination"
evidence=RCA] [GO:0006325 "chromatin organization" evidence=RCA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=RCA] [GO:0007059 "chromosome segregation" evidence=RCA]
[GO:0007062 "sister chromatid cohesion" evidence=RCA] [GO:0007067
"mitosis" evidence=RCA] [GO:0007126 "meiosis" evidence=RCA]
[GO:0007140 "male meiosis" evidence=RCA] [GO:0009560 "embryo sac
egg cell differentiation" evidence=RCA] [GO:0009640
"photomorphogenesis" evidence=RCA] [GO:0010090 "trichome
morphogenesis" evidence=RCA] [GO:0010332 "response to gamma
radiation" evidence=RCA] [GO:0010388 "cullin deneddylation"
evidence=RCA] [GO:0010564 "regulation of cell cycle process"
evidence=RCA] [GO:0010638 "positive regulation of organelle
organization" evidence=RCA] [GO:0016444 "somatic cell DNA
recombination" evidence=RCA] [GO:0016567 "protein ubiquitination"
evidence=RCA] [GO:0016571 "histone methylation" evidence=RCA]
[GO:0016579 "protein deubiquitination" evidence=RCA] [GO:0031048
"chromatin silencing by small RNA" evidence=RCA] [GO:0032204
"regulation of telomere maintenance" evidence=RCA] [GO:0032504
"multicellular organism reproduction" evidence=RCA] [GO:0033044
"regulation of chromosome organization" evidence=RCA] [GO:0042138
"meiotic DNA double-strand break formation" evidence=RCA]
[GO:0043247 "telomere maintenance in response to DNA damage"
evidence=RCA] [GO:0043687 "post-translational protein modification"
evidence=RCA] [GO:0045132 "meiotic chromosome segregation"
evidence=RCA] [GO:0045893 "positive regulation of transcription,
DNA-dependent" evidence=RCA] [GO:0048451 "petal formation"
evidence=RCA] [GO:0048453 "sepal formation" evidence=RCA]
InterPro:IPR000253 InterPro:IPR008984 Pfam:PF00498 PROSITE:PS50006
SMART:SM00240 EMBL:CP002686 Gene3D:2.60.200.20 SUPFAM:SSF49879
GO:GO:0007131 GO:GO:0007129 KO:K10867 UniGene:At.53162
EMBL:DQ167217 IPI:IPI00788521 RefSeq:NP_186917.2
ProteinModelPortal:Q0H8D7 SMR:Q0H8D7 STRING:Q0H8D7 PRIDE:Q0H8D7
EnsemblPlants:AT3G02680.1 GeneID:821254 KEGG:ath:AT3G02680
TAIR:At3g02680 HOGENOM:HOG000084886 OMA:KGVSRIH PhylomeDB:Q0H8D7
ProtClustDB:CLSN2698151 ArrayExpress:Q0H8D7 Genevestigator:Q0H8D7
Uniprot:Q0H8D7
Length = 542
Score = 890 (318.4 bits), Expect = 4.5e-122, Sum P(2) = 4.5e-122
Identities = 176/375 (46%), Positives = 249/375 (66%)
Query: 1 MVWGLFPIDPLPGEDKYYIFSKGNYKVGRKGCDIIINKDKGVSRVHAEILVDEM-ISLNP 59
MVWGLFP+DPL GEDKYYIFSKG YKVGRKGCDIIINKDKGVSR+HAE+ D +S +
Sbjct: 1 MVWGLFPVDPLSGEDKYYIFSKGIYKVGRKGCDIIINKDKGVSRIHAELTFDATTVSTSR 60
Query: 60 FQDKSSKVSTTRVRIKDCSKYGTFINKNLGSKEKVHEFPNKEATLKDGDLVSFGTGNATY 119
SS S+ +R+KDCSKYGTF+ +LG+K+KVHE NKE L+DGD+++FGTG+A Y
Sbjct: 61 RNKSSSDTSSFVIRVKDCSKYGTFVKTDLGTKDKVHELSNKEKILQDGDVIAFGTGSAIY 120
Query: 120 RFCYAPLILFV----DSFQVNAPLQEKVSSIGAFITSKFCQECTHILVQHHMRVKGELLD 175
R PL+ ++ ++F+V+ P+Q+ VSSIGA I+ +ECTH+L++ M+V L++
Sbjct: 121 RLSLIPLVFYLCPSSETFKVDQPVQDAVSSIGARISPTLSEECTHVLLEPRMQVNEALIN 180
Query: 176 AIVAKKPLVDVSWLEVVAEKSIRTDFPGCNSHVTTLIMEGDPVELANVDTLENCMRGYTF 235
AI+AKK ++ +W+ ++AEKSI ++ PG + + ++++E V++ ++ E C+ G+TF
Sbjct: 181 AILAKKTIILTNWVMLLAEKSICSEIPGYSQYRPSVMVEEALVDVLELNVREKCLEGFTF 240
Query: 236 LLDSSMKYKYGDQLQSLLEVSGAKTLSIESFCPSSQDSECVEHNSVVYVLPRKSEDCXXX 295
+L+ + Y++G SLLEV GA+T++IE SQDS+ E N ++ V+P+ + D
Sbjct: 241 VLEPTDTYRFGCSFPSLLEVCGAETVTIEDISSMSQDSQFGEINRMICVIPKSAGDKFGR 300
Query: 296 XXXXXXXXRVNEKDLICAVLSGHLDXXXXXXXXXXXXXXXXCSTDETVVADSDAETEEET 355
RVNE DL+CAV SG+L CSTDETVVADS+AE EE T
Sbjct: 301 FKHLSLLSRVNEMDLVCAVFSGNLPSTSLIPPSVVISSS--CSTDETVVADSEAEEEETT 358
Query: 356 SPGHATAAVDNEEAP 370
S H A + E P
Sbjct: 359 SSVHMIDATEKAETP 373
Score = 331 (121.6 bits), Expect = 4.5e-122, Sum P(2) = 4.5e-122
Identities = 83/212 (39%), Positives = 118/212 (55%)
Query: 384 VNRSDNQHETGLRDGNSSIAYRSADIHGADRSEASHGADFGDGYSCTANRLEDSHCAGFR 443
++ S + ET + D + ++ +H D +E + + A +EDS
Sbjct: 336 ISSSCSTDETVVADSEAEEEETTSSVHMIDATEKAETPE-----KPAAIVIEDSPVTILE 390
Query: 444 DGSN----SIANRSEDRRGTGFRDGNNC---MTTSREKAD-LERENSDIIYSQNLVVRDL 495
+ SN N D G D N +T R++ D E S+IIY+Q+L+VRDL
Sbjct: 391 ETSNLNEFKSVNLLADTESRGHMDEKNSSDSVTIRRDRNDEAETGKSEIIYTQDLIVRDL 450
Query: 496 NVASTISSTANNGVLNFKRFRKTNIQSGNSFSSLIPFSKYPYKDSDNGTEEMAVSMKEEK 555
+ ST GV++FKRFRK N+ GNSFSSLIPF+K PYK+ D+ ++ MKEEK
Sbjct: 451 RSTRKVQSTGGEGVVDFKRFRKGNVTCGNSFSSLIPFAKDPYKEYDSW--DVTDFMKEEK 508
Query: 556 KRKQMEALAEDMFNSAKGKRRGVAGTIYGLLS 587
KRKQMEA+AED+F + K ++RG AG+I G LS
Sbjct: 509 KRKQMEAIAEDLFKTEKARKRGTAGSIRGFLS 540
>UNIPROTKB|Q6XV80 [details] [associations]
symbol:nbn "NBS1" species:8355 "Xenopus laevis" [GO:0000723
"telomere maintenance" evidence=ISS] [GO:0006302 "double-strand
break repair" evidence=ISS] [GO:0007093 "mitotic cell cycle
checkpoint" evidence=ISS] [GO:0007095 "mitotic G2 DNA damage
checkpoint" evidence=ISS] [GO:0008134 "transcription factor
binding" evidence=ISS] [GO:0030870 "Mre11 complex" evidence=ISS]
[GO:0042405 "nuclear inclusion body" evidence=ISS] [GO:0045190
"isotype switching" evidence=ISS] [GO:0047485 "protein N-terminus
binding" evidence=ISS] [GO:0048145 "regulation of fibroblast
proliferation" evidence=ISS] InterPro:IPR000253 InterPro:IPR008984
Pfam:PF00498 PROSITE:PS50006 SMART:SM00240 InterPro:IPR001357
GO:GO:0007095 Gene3D:2.60.200.20 SUPFAM:SSF49879 GO:GO:0006302
GO:GO:0045190 GO:GO:0008134 SUPFAM:SSF52113 GO:GO:0000723
GO:GO:0047485 GO:GO:0042405 GO:GO:0031575 GO:GO:0048145
GO:GO:0030870 CTD:4683 HOVERGEN:HBG053070 KO:K10867
InterPro:IPR013908 InterPro:IPR016592 Pfam:PF08599
PIRSF:PIRSF011869 UniGene:Xl.9528 EMBL:AY207367 EMBL:AY999019
RefSeq:NP_001084420.1 PDB:2K2W PDBsum:2K2W GeneID:403373
KEGG:xla:403373 Xenbase:XB-GENE-943040 EvolutionaryTrace:Q6XV80
Uniprot:Q6XV80
Length = 763
Score = 215 (80.7 bits), Expect = 1.9e-18, Sum P(3) = 1.9e-18
Identities = 70/251 (27%), Positives = 122/251 (48%)
Query: 17 YYIFSKGNYKVGRKGCDIIINKDKGVSRVHAEILVDEMISLNPFQDKSSKVSTTRVRIKD 76
Y+ + +Y VGRK C I+I +D+ +SR HA + V S N Q ++ V + IKD
Sbjct: 14 YHFLTGTDYVVGRKNCAILIPEDQSISRCHATLSVSHP-SANLGQTNAASV----LSIKD 68
Query: 77 CSKYGTFINKNLGSKEKVHEFPNKEATLKDGDLVSFGTGNATYRFCYAPLILF---VDSF 133
SKYGT +N G K P LK GD V+FG N+ YR Y PL++ +D+
Sbjct: 69 SSKYGTTVN---GDKMN----PAVPRNLKSGDKVTFGVFNSKYRVEYEPLVVCSSCLDNS 121
Query: 134 QVNAPLQEKVSSIGAFITSKFCQECTHILVQHHMRVKGELLDAIVAKKPLVDVSW----L 189
+ N+ L + + +G + + + ++ TH LV ++V + + A++ KP++ + L
Sbjct: 122 EKNS-LNQNLIHLGGHVLNNWTEKSTH-LVMTSIKVTIKTICALICCKPIIKPDYFCELL 179
Query: 190 EVVAEKSIRTDFPGCNSHVTTLIMEGDPVELANVDTLENCMRGYTFLLDSSMKYKYGDQL 249
+ EK D+ V + + ++L+ ++ + FL ++ +YK +L
Sbjct: 180 HAIQEKRPLPDYRSFIPSVDEPSLTPESLDLSENVKRKSIFKDKVFLFLNAKQYK---KL 236
Query: 250 QSLLEVSGAKT 260
+ G KT
Sbjct: 237 SPAVLFGGGKT 247
Score = 90 (36.7 bits), Expect = 1.9e-18, Sum P(3) = 1.9e-18
Identities = 30/95 (31%), Positives = 49/95 (51%)
Query: 488 QNLVV-RDLNVASTISSTANNGVLNFKRFRKTNIQSGNSFSSLIPFSKYPYKDSDNGTE- 545
++LVV R + + S+++N NFK+F+K SF ++I S D E
Sbjct: 668 KSLVVSRPVRNNNATSNSSNGKCHNFKKFKKVAYPGAGSFPNIIGGSDLIAHDRKKNAEL 727
Query: 546 EMAVSMKEEKKRKQM--EALAEDMF--NSAKGKRR 576
E + + E++ +Q+ E+LAED+F N KRR
Sbjct: 728 EQWLRQEVEEQTQQVREESLAEDLFRYNPKPSKRR 762
Score = 41 (19.5 bits), Expect = 1.9e-18, Sum P(3) = 1.9e-18
Identities = 11/42 (26%), Positives = 20/42 (47%)
Query: 373 LSKEEISINHAVNRSDNQHETGLRDGNSSIAYRSADIHGADR 414
+ K ++ +H V SD + G+R N+ +DI+ R
Sbjct: 545 VKKRKVPDDHVVEESDVDSDEGIR-ANAEQNDTKSDINVTKR 585
>UNIPROTKB|Q6EKW1 [details] [associations]
symbol:NBS1 "Recombination and DNA repair protein"
species:8355 "Xenopus laevis" [GO:0000723 "telomere maintenance"
evidence=ISS] [GO:0006302 "double-strand break repair"
evidence=ISS] [GO:0007093 "mitotic cell cycle checkpoint"
evidence=ISS] [GO:0007095 "mitotic G2 DNA damage checkpoint"
evidence=ISS] [GO:0008134 "transcription factor binding"
evidence=ISS] [GO:0030870 "Mre11 complex" evidence=ISS] [GO:0042405
"nuclear inclusion body" evidence=ISS] [GO:0045190 "isotype
switching" evidence=ISS] [GO:0047485 "protein N-terminus binding"
evidence=ISS] [GO:0048145 "regulation of fibroblast proliferation"
evidence=ISS] InterPro:IPR000253 InterPro:IPR008984 Pfam:PF00498
PROSITE:PS50006 SMART:SM00240 InterPro:IPR001357 GO:GO:0007095
Gene3D:2.60.200.20 SUPFAM:SSF49879 GO:GO:0006302 GO:GO:0045190
GO:GO:0008134 SUPFAM:SSF52113 GO:GO:0000723 GO:GO:0047485
GO:GO:0042405 GO:GO:0031575 GO:GO:0048145 GO:GO:0030870
HOVERGEN:HBG053070 InterPro:IPR013908 InterPro:IPR016592
Pfam:PF08599 PIRSF:PIRSF011869 UniGene:Xl.9528 EMBL:AY312176
ProteinModelPortal:Q6EKW1 Uniprot:Q6EKW1
Length = 763
Score = 216 (81.1 bits), Expect = 2.3e-18, Sum P(3) = 2.3e-18
Identities = 70/251 (27%), Positives = 122/251 (48%)
Query: 17 YYIFSKGNYKVGRKGCDIIINKDKGVSRVHAEILVDEMISLNPFQDKSSKVSTTRVRIKD 76
Y+ + +Y VGRK C I+I +D+ +SR HA + V S N Q ++ V + IKD
Sbjct: 14 YHFLTGTDYVVGRKNCAILIPEDQSISRCHATLSVSHX-SANLGQTNAASV----LSIKD 68
Query: 77 CSKYGTFINKNLGSKEKVHEFPNKEATLKDGDLVSFGTGNATYRFCYAPLILF---VDSF 133
SKYGT +N G K P LK GD V+FG N+ YR Y PL++ +D+
Sbjct: 69 SSKYGTTVN---GDKMN----PAVPRNLKSGDKVTFGVFNSKYRVEYEPLVVCSSCLDNS 121
Query: 134 QVNAPLQEKVSSIGAFITSKFCQECTHILVQHHMRVKGELLDAIVAKKPLVDVSW----L 189
+ N+ L + + +G + + + ++ TH LV ++V + + A++ KP++ + L
Sbjct: 122 EKNS-LNQNLIHLGGHVLNNWTEKSTH-LVMTSIKVTIKTICALICCKPIIKPDYFCELL 179
Query: 190 EVVAEKSIRTDFPGCNSHVTTLIMEGDPVELANVDTLENCMRGYTFLLDSSMKYKYGDQL 249
+ EK D+ V + + ++L+ ++ + FL ++ +YK +L
Sbjct: 180 RAIQEKRPLPDYRSFIPSVDEPSLTPESLDLSENVKRKSIFKDKVFLFLNAKQYK---KL 236
Query: 250 QSLLEVSGAKT 260
+ G KT
Sbjct: 237 SPAVLFGGGKT 247
Score = 88 (36.0 bits), Expect = 2.3e-18, Sum P(3) = 2.3e-18
Identities = 34/113 (30%), Positives = 57/113 (50%)
Query: 476 DLEREN----SDIIYSQ--NLVV-RDLNVASTISSTANNGVLNFKRFRKTNIQSGNSFSS 528
DL+ EN S ++ ++ +LVV R + + S+++N NFK+F+K SF +
Sbjct: 650 DLQGENDALPSRLLLTEFKSLVVSRPVRNNNATSNSSNGKCHNFKKFKKVAYPGAGSFPN 709
Query: 529 LIPFSKYPYKDSDNGTE-EMAVSMKEEKKRKQM--EALAEDMF--NSAKGKRR 576
+I D E E + + E++ +Q+ E+LAED+F N KRR
Sbjct: 710 IIGGXDLIAHDRKKNAELEQWLRQEVEEQTQQVREESLAEDLFRYNPKPSKRR 762
Score = 41 (19.5 bits), Expect = 2.3e-18, Sum P(3) = 2.3e-18
Identities = 11/42 (26%), Positives = 20/42 (47%)
Query: 373 LSKEEISINHAVNRSDNQHETGLRDGNSSIAYRSADIHGADR 414
+ K ++ +H V SD + G+R N+ +DI+ R
Sbjct: 545 VKKRKVPDDHVVEESDVDSDEGIR-ANAEQNDTKSDINVTKR 585
>MGI|MGI:1351625 [details] [associations]
symbol:Nbn "nibrin" species:10090 "Mus musculus" [GO:0000075
"cell cycle checkpoint" evidence=IMP] [GO:0000077 "DNA damage
checkpoint" evidence=ISO] [GO:0000723 "telomere maintenance"
evidence=ISO] [GO:0000781 "chromosome, telomeric region"
evidence=IEA] [GO:0000784 "nuclear chromosome, telomeric region"
evidence=ISO] [GO:0001701 "in utero embryonic development"
evidence=IMP] [GO:0001832 "blastocyst growth" evidence=IMP]
[GO:0003684 "damaged DNA binding" evidence=IDA] [GO:0005634
"nucleus" evidence=ISO;IDA] [GO:0005657 "replication fork"
evidence=IDA] [GO:0005694 "chromosome" evidence=IEA] [GO:0005730
"nucleolus" evidence=ISO] [GO:0006281 "DNA repair" evidence=IEA]
[GO:0006302 "double-strand break repair" evidence=ISO] [GO:0006915
"apoptotic process" evidence=IMP] [GO:0006974 "response to DNA
damage stimulus" evidence=IEA] [GO:0007049 "cell cycle"
evidence=IEA] [GO:0007093 "mitotic cell cycle checkpoint"
evidence=ISO] [GO:0007095 "mitotic G2 DNA damage checkpoint"
evidence=ISO] [GO:0007126 "meiosis" evidence=IEA] [GO:0008134
"transcription factor binding" evidence=ISO] [GO:0008283 "cell
proliferation" evidence=IMP] [GO:0008284 "positive regulation of
cell proliferation" evidence=ISO] [GO:0030870 "Mre11 complex"
evidence=ISO] [GO:0031954 "positive regulation of protein
autophosphorylation" evidence=ISO] [GO:0032508 "DNA duplex
unwinding" evidence=ISO] [GO:0033674 "positive regulation of kinase
activity" evidence=ISO] [GO:0042405 "nuclear inclusion body"
evidence=ISO] [GO:0045190 "isotype switching" evidence=IDA]
[GO:0045665 "negative regulation of neuron differentiation"
evidence=ISO] [GO:0047485 "protein N-terminus binding"
evidence=ISO] [GO:0048145 "regulation of fibroblast proliferation"
evidence=ISO] [GO:0050885 "neuromuscular process controlling
balance" evidence=IMP] InterPro:IPR000253 InterPro:IPR008984
Pfam:PF00498 PROSITE:PS50006 SMART:SM00240 InterPro:IPR001357
MGI:MGI:1351625 GO:GO:0007126 GO:GO:0006915 GO:GO:0007095
GO:GO:0005730 GO:GO:0042493 GO:GO:0003684 GO:GO:0008284
GO:GO:0008283 GO:GO:0045665 GO:GO:0050885 Gene3D:2.60.200.20
SUPFAM:SSF49879 GO:GO:0004003 GO:GO:0006302 GO:GO:0045190
GO:GO:0008134 SMART:SM00292 SUPFAM:SSF52113 PROSITE:PS50172
GO:GO:0000784 GO:GO:0000723 GO:GO:0047485 GO:GO:0042405
GO:GO:0005657 GO:GO:0031575 GO:GO:0048145 GO:GO:0031954
GO:GO:0001832 GO:GO:0030870 GO:GO:0033674 CTD:4683 eggNOG:NOG84999
HOGENOM:HOG000231654 HOVERGEN:HBG053070 KO:K10867 OrthoDB:EOG45MN4Q
InterPro:IPR013908 InterPro:IPR016592 Pfam:PF08599
PIRSF:PIRSF011869 OMA:KLPHIIG EMBL:AF076687 EMBL:AB016988
EMBL:AF092840 EMBL:BC044773 EMBL:BC055061 EMBL:AK134960
EMBL:AK031933 IPI:IPI00316857 RefSeq:NP_038780.3 UniGene:Mm.20866
ProteinModelPortal:Q9R207 SMR:Q9R207 DIP:DIP-46804N IntAct:Q9R207
STRING:Q9R207 PhosphoSite:Q9R207 PRIDE:Q9R207
Ensembl:ENSMUST00000029879 GeneID:27354 KEGG:mmu:27354
GeneTree:ENSGT00390000000521 InParanoid:Q9R207 NextBio:305208
Bgee:Q9R207 CleanEx:MM_NBN Genevestigator:Q9R207
GermOnline:ENSMUSG00000028224 Uniprot:Q9R207
Length = 751
Score = 233 (87.1 bits), Expect = 2.8e-18, Sum P(2) = 2.8e-18
Identities = 73/266 (27%), Positives = 128/266 (48%)
Query: 2 VWGLFPI-DPLPGEDKYYIFSKGNYKVGRKGCDIIINKDKGVSRVHAEILVD-EMISLNP 59
+W L P PGE Y + + Y VGRK C I+I D+ +SR HA + V+ + SL+
Sbjct: 1 MWKLLPAAGAAPGEP-YRLLAGVEYVVGRKNCGILIENDQSISRNHAVLTVNFPVTSLS- 58
Query: 60 FQDKSSKVSTTRVRIKDCSKYGTFINKNLGSKEKVHEFPNKEATLKDGDLVSFGTGNATY 119
++ ++ T + IKD SKYGTF+N+ EK+ TLK GD V+FG + +
Sbjct: 59 ---QTDEIPT--LTIKDNSKYGTFVNE-----EKMQT--GLSCTLKTGDRVTFGVFESKF 106
Query: 120 RFCYAPLILFVDSFQVNAP--LQEKVSSIGAFITSKFCQECTHILVQHHMRVKGELLDAI 177
R Y PL++ V+ L + + +G + + +ECTH LV ++V + + A+
Sbjct: 107 RVEYEPLVVCSSCLDVSGKTVLNQAILQLGGLTANNWTEECTH-LVMSAVKVTIKTICAL 165
Query: 178 VAKKPLVDVSW----LEVVAEKSIRTDFPGCNSHVTTLIMEGDPVELANVDTLENCMRGY 233
+ +P++ + L+ V K D + + V+L+ + +G
Sbjct: 166 ICGRPIIKPEYFSEFLKAVESKKQPPDIESFYPPIDEPAIGSKSVDLSGRHERKQIFKGK 225
Query: 234 TFLLDSSMKYKYGDQLQSLLEVSGAK 259
TF+ ++ ++K +L S + G +
Sbjct: 226 TFVFLNAKQHK---KLSSAVAFGGGE 248
Score = 68 (29.0 bits), Expect = 2.8e-18, Sum P(2) = 2.8e-18
Identities = 27/94 (28%), Positives = 44/94 (46%)
Query: 488 QNLVVRDLNVASTISSTANNGVL-NFKRFRKTNIQSGNSFSSLIPFSKYPYKDSDNGTE- 545
++LVV + N S G L NFK+F+K +I S + TE
Sbjct: 658 RSLVVSNHNSTSRNLCVNECGPLKNFKKFKKATFPGAGKLPHIIGGSDLVGHHARKNTEL 717
Query: 546 E--MAVSMKEEKKRKQMEALAEDMFN-SAKGKRR 576
E + M+ +K++ + E+LA+D+F + KRR
Sbjct: 718 EEWLKQEMEVQKQQAKEESLADDLFRYNPNVKRR 751
>UNIPROTKB|Q9DE07 [details] [associations]
symbol:NBN "Nibrin" species:9031 "Gallus gallus"
[GO:0007126 "meiosis" evidence=IEA] [GO:0000781 "chromosome,
telomeric region" evidence=IEA] [GO:0000724 "double-strand break
repair via homologous recombination" evidence=TAS] [GO:0005654
"nucleoplasm" evidence=TAS] [GO:0006281 "DNA repair" evidence=TAS]
[GO:0006302 "double-strand break repair" evidence=ISS;TAS]
[GO:0048145 "regulation of fibroblast proliferation" evidence=ISS]
[GO:0000723 "telomere maintenance" evidence=ISS] [GO:0007095
"mitotic G2 DNA damage checkpoint" evidence=ISS] [GO:0008134
"transcription factor binding" evidence=ISS] [GO:0030870 "Mre11
complex" evidence=ISS] [GO:0007093 "mitotic cell cycle checkpoint"
evidence=ISS] [GO:0042405 "nuclear inclusion body" evidence=ISS]
[GO:0047485 "protein N-terminus binding" evidence=ISS]
InterPro:IPR000253 InterPro:IPR008984 Pfam:PF00498 PROSITE:PS50006
SMART:SM00240 InterPro:IPR001357 Pfam:PF00533 GO:GO:0007126
GO:GO:0007095 GO:GO:0005654 Gene3D:2.60.200.20 SUPFAM:SSF49879
GO:GO:0000724 GO:GO:0008134 SMART:SM00292 SUPFAM:SSF52113
PROSITE:PS50172 GO:GO:0000781 GO:GO:0000723 GO:GO:0047485
GO:GO:0042405 Reactome:REACT_115612 GO:GO:0031575 GO:GO:0048145
GO:GO:0030870 EMBL:AF230342 IPI:IPI00601846 RefSeq:NP_989668.1
UniGene:Gga.196 ProteinModelPortal:Q9DE07 SMR:Q9DE07 STRING:Q9DE07
GeneID:374246 KEGG:gga:374246 CTD:4683 eggNOG:NOG84999
HOGENOM:HOG000231654 HOVERGEN:HBG053070 InParanoid:Q9DE07 KO:K10867
OrthoDB:EOG45MN4Q NextBio:20813741 InterPro:IPR013908
InterPro:IPR016592 Pfam:PF08599 PIRSF:PIRSF011869 Uniprot:Q9DE07
Length = 753
Score = 221 (82.9 bits), Expect = 2.3e-17, Sum P(2) = 2.3e-17
Identities = 67/249 (26%), Positives = 116/249 (46%)
Query: 2 VWGLFPIDPLPGEDKYYIFSKGNYKVGRKGCDIIINKDKGVSRVHAEILVDEMISLNPFQ 61
+W L P PGE + + Y VGRK C +I D+ +SR HA + V P
Sbjct: 1 MWKLVPAAG-PGEP-FRLLVGTEYVVGRKNCAFLIQDDQSISRSHAVLTVSR-----PET 53
Query: 62 DKSSKVSTTRVRIKDCSKYGTFINKNLGSKEKVHEFPNKEATLKDGDLVSFGTGNATYRF 121
S VS + IKD SKYGTF+N GSK +L+ GD V+FG + +R
Sbjct: 54 THSQSVSVPVLTIKDTSKYGTFVN---GSK-----LSGASRSLQSGDRVNFGVFESKFRV 105
Query: 122 CYAPLILFVDSFQV--NAPLQEKVSSIGAFITSKFCQECTHILVQHHMRVKGELLDAIVA 179
Y L++ V L E + +G + +++ +ECTH++++ ++V + + A++
Sbjct: 106 EYESLVVCSSCLDVAQKTALNEAIQQLGGLVVNEWTKECTHLIMES-VKVTVKTICALIC 164
Query: 180 KKPLVDVSWL-EVVAEKSIRTDFPGCNSHVTTLIMEG---DPVELANVDTLENCMRGYTF 235
+P+V + E++ R P S ++ D ++L+ + G TF
Sbjct: 165 GRPIVKPEFFSELMKAVQSRQQLPTPESFYPSVDEPAIGIDNMDLSGHPERKKIFSGKTF 224
Query: 236 LLDSSMKYK 244
+ ++ ++K
Sbjct: 225 VFLTAKQHK 233
Score = 72 (30.4 bits), Expect = 2.3e-17, Sum P(2) = 2.3e-17
Identities = 32/136 (23%), Positives = 64/136 (47%)
Query: 448 SIANRSEDRRGTGFRDGNNCMTTSREKADLERENSDIIYSQ--NLVVR-DLNVASTISST 504
++ ++S+ + + N + ++ + D R S ++ ++ +LVV + + T+ +T
Sbjct: 617 TLEDKSKIKEESSVSIRNKLINHNKLEDDSSRLPSKLLLTEFRSLVVSCPRSNSPTMRNT 676
Query: 505 ANNGVLNFKRFRKTNIQSGNSFSSLIPFSKY-PYKDSDNGT-EE-MAVSMKEEKKRKQME 561
G NFK FRK +I S ++ N EE + ++E+ +R + E
Sbjct: 677 KCRGQNNFKTFRKVPYPGAGQLPYIIGGSDLVAHQARKNSELEEWLREELEEQNRRAREE 736
Query: 562 ALAEDMFN-SAKGKRR 576
+LA+D+F KRR
Sbjct: 737 SLADDLFRYDPNVKRR 752
Score = 44 (20.5 bits), Expect = 1.9e-14, Sum P(2) = 1.9e-14
Identities = 25/99 (25%), Positives = 44/99 (44%)
Query: 472 REKADLERENSDIIYSQNLVVRDLNVASTISSTANNGVLNFKRF--RKTNIQSGNSFSSL 529
RE+A+ E E + + L + L V+ S+A++ + K + NIQ G L
Sbjct: 463 RERAE-EGEETSLSKQAKLEKKPLPVSECTESSASSAWNSEKEQHGKGNNIQLGRESGEL 521
Query: 530 IPFSKYPYKDSDNGTEEMAVSMKEE-KKRKQMEALAEDM 567
SD ++ S KKRK+++ ++ED+
Sbjct: 522 A---------SDKTDIKITFSENPAPKKRKELDDVSEDV 551
>UNIPROTKB|F1NX19 [details] [associations]
symbol:NBN "Nibrin" species:9031 "Gallus gallus"
[GO:0000723 "telomere maintenance" evidence=IEA] [GO:0000784
"nuclear chromosome, telomeric region" evidence=IEA] [GO:0001832
"blastocyst growth" evidence=IEA] [GO:0003684 "damaged DNA binding"
evidence=IEA] [GO:0004003 "ATP-dependent DNA helicase activity"
evidence=IEA] [GO:0005657 "replication fork" evidence=IEA]
[GO:0005730 "nucleolus" evidence=IEA] [GO:0006302 "double-strand
break repair" evidence=IEA] [GO:0006915 "apoptotic process"
evidence=IEA] [GO:0007095 "mitotic G2 DNA damage checkpoint"
evidence=IEA] [GO:0008134 "transcription factor binding"
evidence=IEA] [GO:0008283 "cell proliferation" evidence=IEA]
[GO:0030870 "Mre11 complex" evidence=IEA] [GO:0031954 "positive
regulation of protein autophosphorylation" evidence=IEA]
[GO:0033674 "positive regulation of kinase activity" evidence=IEA]
[GO:0042405 "nuclear inclusion body" evidence=IEA] [GO:0045190
"isotype switching" evidence=IEA] [GO:0047485 "protein N-terminus
binding" evidence=IEA] [GO:0050885 "neuromuscular process
controlling balance" evidence=IEA] InterPro:IPR000253
InterPro:IPR008984 Pfam:PF00498 PROSITE:PS50006 SMART:SM00240
InterPro:IPR001357 Pfam:PF00533 GO:GO:0006915 GO:GO:0007095
GO:GO:0005730 GO:GO:0003684 GO:GO:0008283 Gene3D:2.60.200.20
SUPFAM:SSF49879 GO:GO:0004003 GO:GO:0006302 SMART:SM00292
SUPFAM:SSF52113 GO:GO:0000784 GO:GO:0000723 GO:GO:0042405
GO:GO:0005657 GO:GO:0031575 GO:GO:0031954 GO:GO:0030870
GO:GO:0033674 IPI:IPI00601846 InterPro:IPR013908 InterPro:IPR016592
Pfam:PF08599 PIRSF:PIRSF011869 OMA:KLPHIIG
GeneTree:ENSGT00390000000521 EMBL:AADN02024837 EMBL:AADN02024836
Ensembl:ENSGALT00000025646 Uniprot:F1NX19
Length = 753
Score = 221 (82.9 bits), Expect = 3.0e-17, Sum P(2) = 3.0e-17
Identities = 67/249 (26%), Positives = 116/249 (46%)
Query: 2 VWGLFPIDPLPGEDKYYIFSKGNYKVGRKGCDIIINKDKGVSRVHAEILVDEMISLNPFQ 61
+W L P PGE + + Y VGRK C +I D+ +SR HA + V P
Sbjct: 1 MWKLVPAAG-PGEP-FRLLVGTEYVVGRKNCAFLIQDDQSISRSHAVLTVSR-----PET 53
Query: 62 DKSSKVSTTRVRIKDCSKYGTFINKNLGSKEKVHEFPNKEATLKDGDLVSFGTGNATYRF 121
S VS + IKD SKYGTF+N GSK +L+ GD V+FG + +R
Sbjct: 54 THSQSVSVPVLTIKDTSKYGTFVN---GSK-----LSGASRSLQSGDRVNFGVFESKFRV 105
Query: 122 CYAPLILFVDSFQV--NAPLQEKVSSIGAFITSKFCQECTHILVQHHMRVKGELLDAIVA 179
Y L++ V L E + +G + +++ +ECTH++++ ++V + + A++
Sbjct: 106 EYESLVVCSSCLDVAQKTALNEAIQQLGGLVVNEWTKECTHLIMES-VKVTVKTICALIC 164
Query: 180 KKPLVDVSWL-EVVAEKSIRTDFPGCNSHVTTLIMEG---DPVELANVDTLENCMRGYTF 235
+P+V + E++ R P S ++ D ++L+ + G TF
Sbjct: 165 GRPIVKPEFFSELMKAVQSRQQLPTPESFYPSVDEPAIGIDNMDLSGHPERKKIFSGKTF 224
Query: 236 LLDSSMKYK 244
+ ++ ++K
Sbjct: 225 VFLTAKQHK 233
Score = 71 (30.1 bits), Expect = 3.0e-17, Sum P(2) = 3.0e-17
Identities = 32/136 (23%), Positives = 64/136 (47%)
Query: 448 SIANRSEDRRGTGFRDGNNCMTTSREKADLERENSDIIYSQ--NLVVR-DLNVASTISST 504
++ ++S+ + + N + ++ + D R S ++ ++ +LVV + + T+ +T
Sbjct: 617 TLEDKSKIKEESSVSVRNKLINHNKLEDDSSRLPSKLLLTEFRSLVVSCPRSNSPTMRNT 676
Query: 505 ANNGVLNFKRFRKTNIQSGNSFSSLIPFSKY-PYKDSDNGT-EE-MAVSMKEEKKRKQME 561
G NFK FRK +I S ++ N EE + ++E+ +R + E
Sbjct: 677 KCRGQNNFKTFRKVPYPRAGQLPYIIGGSDLVAHQARKNSELEEWLREELEEQNRRAREE 736
Query: 562 ALAEDMFN-SAKGKRR 576
+LA+D+F KRR
Sbjct: 737 SLADDLFRYDPNVKRR 752
Score = 44 (20.5 bits), Expect = 1.9e-14, Sum P(2) = 1.9e-14
Identities = 25/99 (25%), Positives = 44/99 (44%)
Query: 472 REKADLERENSDIIYSQNLVVRDLNVASTISSTANNGVLNFKRF--RKTNIQSGNSFSSL 529
RE+A+ E E + + L + L V+ S+A++ + K + NIQ G L
Sbjct: 463 RERAE-EGEETSLSKQAKLEKKPLPVSECTESSASSAWNSEKEQHGKGNNIQLGRESGEL 521
Query: 530 IPFSKYPYKDSDNGTEEMAVSMKEE-KKRKQMEALAEDM 567
SD ++ S KKRK+++ ++ED+
Sbjct: 522 A---------SDKTDIKITFSENPAPKKRKELDDVSEDV 551
>UNIPROTKB|Q5RCV3 [details] [associations]
symbol:NBN "Nibrin" species:9601 "Pongo abelii" [GO:0000723
"telomere maintenance" evidence=ISS] [GO:0001701 "in utero
embryonic development" evidence=ISS] [GO:0001832 "blastocyst
growth" evidence=ISS] [GO:0006302 "double-strand break repair"
evidence=ISS] [GO:0007093 "mitotic cell cycle checkpoint"
evidence=ISS] [GO:0007095 "mitotic G2 DNA damage checkpoint"
evidence=ISS] [GO:0008134 "transcription factor binding"
evidence=ISS] [GO:0030870 "Mre11 complex" evidence=ISS] [GO:0042405
"nuclear inclusion body" evidence=ISS] [GO:0045190 "isotype
switching" evidence=ISS] [GO:0047485 "protein N-terminus binding"
evidence=ISS] [GO:0048145 "regulation of fibroblast proliferation"
evidence=ISS] InterPro:IPR000253 InterPro:IPR008984 Pfam:PF00498
PROSITE:PS50006 SMART:SM00240 InterPro:IPR001357 GO:GO:0007126
GO:GO:0007095 Gene3D:2.60.200.20 SUPFAM:SSF49879 GO:GO:0006302
GO:GO:0045190 GO:GO:0008134 SMART:SM00292 SUPFAM:SSF52113
PROSITE:PS50172 GO:GO:0000781 GO:GO:0000723 GO:GO:0047485
GO:GO:0042405 GO:GO:0031575 GO:GO:0048145 GO:GO:0001832
GO:GO:0030870 CTD:4683 HOVERGEN:HBG053070 KO:K10867
InterPro:IPR013908 InterPro:IPR016592 Pfam:PF08599
PIRSF:PIRSF011869 EMBL:CR857059 EMBL:CR858165 RefSeq:NP_001125200.1
RefSeq:NP_001191291.1 UniGene:Pab.19292 UniGene:Pab.729
ProteinModelPortal:Q5RCV3 SMR:Q5RCV3 GeneID:100172091
KEGG:pon:100172091 Uniprot:Q5RCV3
Length = 754
Score = 231 (86.4 bits), Expect = 3.2e-17, Sum P(2) = 3.2e-17
Identities = 68/249 (27%), Positives = 119/249 (47%)
Query: 2 VWGLFPIDPLPGEDKYYIFSKGNYKVGRKGCDIIINKDKGVSRVHAEILVDEMISLNPFQ 61
+W L P G + Y + + Y VGRK C I+I KD+ +SR HA + + ++ N Q
Sbjct: 1 MWKLLPAAGPAGGEPYRLLTGVEYVVGRKNCAILIEKDQSISRNHAVLTANFSVT-NLSQ 59
Query: 62 DKSSKVSTTRVRIKDCSKYGTFINKNLGSKEKVHEFPNKEATLKDGDLVSFGTGNATYRF 121
V + +KD SKYGTF+N+ EK+ ++ TLK GD ++FG + +R
Sbjct: 60 TDEIPV----LALKDNSKYGTFVNE-----EKMQNGFSR--TLKSGDSITFGVFESKFRI 108
Query: 122 CYAPLILFVDSFQVNAP--LQEKVSSIGAFITSKFCQECTHILVQHHMRVKGELLDAIVA 179
Y PL+ V+ L + + +G F + + +ECTH LV ++V + + A++
Sbjct: 109 EYEPLVACSSCLDVSGKTALNQAILQLGGFTVNNWTEECTH-LVMVSVKVTIKTICALIC 167
Query: 180 KKPLVDVSWL-EVVAEKSIRTDFPGCNSHVTTL---IMEGDPVELANVDTLENCMRGYTF 235
+P+V + E + + P S L + V+L+ + +G TF
Sbjct: 168 GRPIVKPEYFTEFLKAVQSKKQLPQIESFYPPLDEPSIGSKNVDLSGRQERKQIFKGKTF 227
Query: 236 LLDSSMKYK 244
+ ++ ++K
Sbjct: 228 IFLNAKQHK 236
Score = 60 (26.2 bits), Expect = 3.2e-17, Sum P(2) = 3.2e-17
Identities = 20/85 (23%), Positives = 40/85 (47%)
Query: 488 QNLVVRDLNVASTISSTANNGVL-NFKRFRKTNIQSGNSFSSLIPFSKYPYKDSDNGTE- 545
++LV+++ + + G+L NFK+F+K +I S + TE
Sbjct: 660 RSLVIKNSTSRNPSGINGDYGLLKNFKKFKKVTYPGAGKLPHIIGGSDLIAHHARKNTEL 719
Query: 546 E--MAVSMKEEKKRKQMEALAEDMF 568
E + M+ + + + E+LA+D+F
Sbjct: 720 EEWLRQEMEVQNQHAKEESLADDLF 744
>UNIPROTKB|F6PSE2 [details] [associations]
symbol:NBN "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0050885 "neuromuscular process controlling balance"
evidence=IEA] [GO:0047485 "protein N-terminus binding"
evidence=IEA] [GO:0045190 "isotype switching" evidence=IEA]
[GO:0042405 "nuclear inclusion body" evidence=IEA] [GO:0033674
"positive regulation of kinase activity" evidence=IEA] [GO:0031954
"positive regulation of protein autophosphorylation" evidence=IEA]
[GO:0030870 "Mre11 complex" evidence=IEA] [GO:0008283 "cell
proliferation" evidence=IEA] [GO:0008134 "transcription factor
binding" evidence=IEA] [GO:0007095 "mitotic G2 DNA damage
checkpoint" evidence=IEA] [GO:0006915 "apoptotic process"
evidence=IEA] [GO:0006302 "double-strand break repair"
evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA] [GO:0005657
"replication fork" evidence=IEA] [GO:0004003 "ATP-dependent DNA
helicase activity" evidence=IEA] [GO:0003684 "damaged DNA binding"
evidence=IEA] [GO:0001832 "blastocyst growth" evidence=IEA]
[GO:0000784 "nuclear chromosome, telomeric region" evidence=IEA]
[GO:0000723 "telomere maintenance" evidence=IEA] InterPro:IPR000253
InterPro:IPR008984 Pfam:PF00498 PROSITE:PS50006 SMART:SM00240
InterPro:IPR001357 GO:GO:0006915 GO:GO:0007095 GO:GO:0005730
GO:GO:0003684 GO:GO:0008283 GO:GO:0050885 Gene3D:2.60.200.20
SUPFAM:SSF49879 GO:GO:0004003 GO:GO:0006302 GO:GO:0045190
SMART:SM00292 SUPFAM:SSF52113 GO:GO:0000784 GO:GO:0000723
GO:GO:0042405 GO:GO:0005657 GO:GO:0031575 GO:GO:0031954
GO:GO:0001832 GO:GO:0030870 GO:GO:0033674 CTD:4683 KO:K10867
InterPro:IPR013908 InterPro:IPR016592 Pfam:PF08599
PIRSF:PIRSF011869 OMA:KLPHIIG GeneTree:ENSGT00390000000521
EMBL:DAAA02039531 IPI:IPI00955254 RefSeq:NP_001069305.2
UniGene:Bt.16679 ProteinModelPortal:F6PSE2
Ensembl:ENSBTAT00000017598 GeneID:522943 KEGG:bta:522943
NextBio:20873630 Uniprot:F6PSE2
Length = 754
Score = 221 (82.9 bits), Expect = 6.1e-17, Sum P(2) = 6.1e-17
Identities = 68/249 (27%), Positives = 114/249 (45%)
Query: 2 VWGLFPIDPLPGEDKYYIFSKGNYKVGRKGCDIIINKDKGVSRVHAEILVDEMISLNPFQ 61
+W L P P + Y + + Y VGRK C I+I D+ +SR HA + + ++ N Q
Sbjct: 1 MWKLVPAAG-PAREPYRLLTGVEYIVGRKNCGILIEDDQSISRNHATLTANFSVT-NLSQ 58
Query: 62 DKSSKVSTTRVRIKDCSKYGTFINKNLGSKEKVHEFPNKEATLKDGDLVSFGTGNATYRF 121
V T IKD SKYGTF+N+ EK+ LK GD V+FG + +R
Sbjct: 59 TDEIPVLT----IKDNSKYGTFVNE-----EKMQN--GLSQILKSGDRVTFGVFESKFRV 107
Query: 122 CYAPLILFVDSFQVNAP--LQEKVSSIGAFITSKFCQECTHILVQHHMRVKGELLDAIVA 179
Y PL+ V+ L + +G + + +ECTH LV ++V + + A++
Sbjct: 108 EYEPLVACSSCLDVSGKTALSHAILQLGGLTVNNWTEECTH-LVMVSVKVTIKTICALIC 166
Query: 180 KKPLVD----VSWLEVVAEKSIRTDFPGCNSHVTTLIMEGDPVELANVDTLENCMRGYTF 235
+P+V +L+ V K + V +E ++L+ + +G TF
Sbjct: 167 GRPIVKPEYFTEFLKAVQSKKQLPEIESFYPPVDEPAIESKNIDLSGRQERKQIFKGKTF 226
Query: 236 LLDSSMKYK 244
+ ++ ++K
Sbjct: 227 VFLNAKQHK 235
Score = 68 (29.0 bits), Expect = 6.1e-17, Sum P(2) = 6.1e-17
Identities = 33/144 (22%), Positives = 65/144 (45%)
Query: 446 SNSIANRSEDRRGTGFRDGNNCMTTSREKADLERENSDIIYSQNLVV---RDLNVASTIS 502
SN I+ +E ++ + + +T + E ++ D + + +++ R L V ++ S
Sbjct: 611 SNKISQENEIKKKCELKK-ESLWSTKELSNNCELQDGDEMLPKKVLLTEFRSLVVCNSTS 669
Query: 503 STANN-----GVL-NFKRFRKTNIQSGNSFSSLIPFSKYPYKDSDNGTE-E--MAVSMKE 553
A+N G L NFK+F+K +I S + TE E + M+
Sbjct: 670 RNASNVNNDYGELKNFKKFKKVTFPGAGKLPHIIGGSDLIAHHARKNTELEEWLRQEMEV 729
Query: 554 EKKRKQMEALAEDMFN-SAKGKRR 576
+ + + ++LA+D+F + KRR
Sbjct: 730 QNQHAKEDSLADDLFRYNPNVKRR 753
Score = 52 (23.4 bits), Expect = 2.8e-15, Sum P(2) = 2.8e-15
Identities = 33/142 (23%), Positives = 59/142 (41%)
Query: 443 RDGSNSIANRSEDRRGTGFRDGNNCMTTSREKADLERENSDIIYSQNLVVR--------D 494
RD N + S+ R + + ++ L R+N D SQN++V D
Sbjct: 469 RDEENQEMSLSKSAR---METSCSLLEQTQPTTSLIRKNKDEHLSQNVLVEENPDNSYAD 525
Query: 495 LNVASTISSTANNGVL--NFKRFRKTNIQSGNSFSSLIPFSKYPYKDSDNGTE-EMAVSM 551
NV T+ + AN + N K ++ I ++ + +KD++ E E+ V
Sbjct: 526 TNVKPTVKNYANKSLFTENLKSKKRKEIDDLAIEDEVL---EQLFKDTELELESEVKVQK 582
Query: 552 KEE----KKRKQMEALAEDMFN 569
+EE +KR +++ FN
Sbjct: 583 QEEDINVRKRLRLDKETNVTFN 604
>RGD|621420 [details] [associations]
symbol:Nbn "nibrin" species:10116 "Rattus norvegicus" [GO:0000075
"cell cycle checkpoint" evidence=ISO;TAS] [GO:0000077 "DNA damage
checkpoint" evidence=ISO] [GO:0000723 "telomere maintenance"
evidence=IEA;ISO;ISS;TAS] [GO:0000781 "chromosome, telomeric
region" evidence=IEA] [GO:0000784 "nuclear chromosome, telomeric
region" evidence=IEA;ISO] [GO:0001701 "in utero embryonic
development" evidence=ISO;ISS] [GO:0001832 "blastocyst growth"
evidence=IEA;ISO;ISS] [GO:0003674 "molecular_function" evidence=ND]
[GO:0003684 "damaged DNA binding" evidence=IEA;ISO] [GO:0004003
"ATP-dependent DNA helicase activity" evidence=IEA;ISO] [GO:0005634
"nucleus" evidence=ISO] [GO:0005657 "replication fork"
evidence=IEA;ISO] [GO:0005730 "nucleolus" evidence=IEA;ISO]
[GO:0006302 "double-strand break repair" evidence=IEA;ISO;ISS;TAS]
[GO:0006915 "apoptotic process" evidence=IEA;ISO] [GO:0007093
"mitotic cell cycle checkpoint" evidence=ISO;ISS] [GO:0007095
"mitotic G2 DNA damage checkpoint" evidence=IEA;ISO;ISS]
[GO:0007131 "reciprocal meiotic recombination" evidence=TAS]
[GO:0008134 "transcription factor binding" evidence=IEA;ISO;ISS]
[GO:0008283 "cell proliferation" evidence=IEA;ISO] [GO:0008284
"positive regulation of cell proliferation" evidence=IMP]
[GO:0030870 "Mre11 complex" evidence=IEA;ISO;ISS;TAS] [GO:0031954
"positive regulation of protein autophosphorylation"
evidence=IEA;ISO] [GO:0032508 "DNA duplex unwinding" evidence=ISO]
[GO:0033674 "positive regulation of kinase activity"
evidence=IEA;ISO] [GO:0042405 "nuclear inclusion body"
evidence=IEA;ISO;ISS] [GO:0042493 "response to drug" evidence=IEP]
[GO:0045190 "isotype switching" evidence=IEA;ISO;ISS] [GO:0045665
"negative regulation of neuron differentiation" evidence=IMP]
[GO:0047485 "protein N-terminus binding" evidence=IEA;ISO;ISS]
[GO:0048145 "regulation of fibroblast proliferation" evidence=IDA]
[GO:0050885 "neuromuscular process controlling balance"
evidence=IEA;ISO] InterPro:IPR000253 InterPro:IPR008984
Pfam:PF00498 PROSITE:PS50006 SMART:SM00240 InterPro:IPR001357
RGD:621420 GO:GO:0006915 GO:GO:0007095 GO:GO:0005730 GO:GO:0042493
GO:GO:0003684 GO:GO:0008284 GO:GO:0008283 GO:GO:0045665
GO:GO:0050885 Gene3D:2.60.200.20 SUPFAM:SSF49879 GO:GO:0004003
GO:GO:0006302 GO:GO:0045190 GO:GO:0008134 SMART:SM00292
SUPFAM:SSF52113 PROSITE:PS50172 GO:GO:0000784 GO:GO:0000723
GO:GO:0047485 GO:GO:0007131 GO:GO:0042405 GO:GO:0005657
GO:GO:0031575 GO:GO:0048145 GO:GO:0031954 GO:GO:0001832
GO:GO:0030870 GO:GO:0033674 CTD:4683 eggNOG:NOG84999
HOGENOM:HOG000231654 HOVERGEN:HBG053070 KO:K10867 OrthoDB:EOG45MN4Q
InterPro:IPR013908 InterPro:IPR016592 Pfam:PF08599
PIRSF:PIRSF011869 EMBL:AF218575 EMBL:BC085700 IPI:IPI00200676
RefSeq:NP_620228.1 UniGene:Rn.25214 ProteinModelPortal:Q9JIL9
SMR:Q9JIL9 STRING:Q9JIL9 PRIDE:Q9JIL9 GeneID:85482 KEGG:rno:85482
UCSC:RGD:621420 InParanoid:Q9JIL9 NextBio:617562
Genevestigator:Q9JIL9 GermOnline:ENSRNOG00000008580 Uniprot:Q9JIL9
Length = 750
Score = 219 (82.2 bits), Expect = 5.4e-16, Sum P(2) = 5.4e-16
Identities = 70/251 (27%), Positives = 122/251 (48%)
Query: 2 VWGLFPI-DPLPGEDKYYIFSKGNYKVGRKGCDIIINKDKGVSRVHAEILVD-EMISLNP 59
+W L P PGE + + Y VGRK C I+I D+ +SR HA + V+ + SL+
Sbjct: 1 MWKLLPAASAAPGEP-CRLLAGVEYIVGRKNCAILIENDQSISRNHAVLRVNFPVTSLS- 58
Query: 60 FQDKSSKVSTTRVRIKDCSKYGTFINKNLGSKEKVHEFPNKEATLKDGDLVSFGTGNATY 119
++ ++ T + IKD SKYGTFIN+ EK+ +TLK GD V+FG + +
Sbjct: 59 ---QTDEIPT--LTIKDNSKYGTFINE-----EKMQN--GLSSTLKTGDRVTFGVFESKF 106
Query: 120 RFCYAPLILFVDSFQVNAP--LQEKVSSIGAFITSKFCQECTHILVQHHMRVKGELLDAI 177
R Y PL++ V+ L + + +G + + +ECTH L ++V + + A+
Sbjct: 107 RVEYEPLVVCSSCLDVSGKTVLNQAILQLGGLTANSWTEECTH-LAMSSVKVTIKTICAL 165
Query: 178 VAKKPLVDVSWL-EVVAEKSIRTDFPGCNSHVTTL---IMEGDPVELANVDTLENCMRGY 233
+ +P+V + E + +T P S + + V+L+ + +G
Sbjct: 166 ICGRPIVKPEYFSEFLKAVESKTQPPEIESFYPPIDEPAIGNKSVDLSGRRERKQIFKGK 225
Query: 234 TFLLDSSMKYK 244
TF+ ++ ++K
Sbjct: 226 TFVFLNAKQHK 236
Score = 61 (26.5 bits), Expect = 5.4e-16, Sum P(2) = 5.4e-16
Identities = 25/94 (26%), Positives = 45/94 (47%)
Query: 488 QNLVVRDLNVASTISSTANNGVL-NFKRFRKTNIQSGNSFSSLIPFSKYPYKDSDNGTE- 545
++LVV + N + + G L NFK+F+K +I S + TE
Sbjct: 658 RSLVVHN-NSSRNLCVLNGRGELKNFKKFKKATCPGAGKLPHIIGGSDLIGHHARKNTEL 716
Query: 546 E--MAVSMKEEKKRKQMEALAEDMFN-SAKGKRR 576
E + M+ +K++ + ++LA+D+F + KRR
Sbjct: 717 EEWLKHEMEVQKQQAKEDSLADDLFRYNPNVKRR 750
>UNIPROTKB|F1RXF2 [details] [associations]
symbol:NBN "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0050885 "neuromuscular process controlling balance"
evidence=IEA] [GO:0047485 "protein N-terminus binding"
evidence=IEA] [GO:0045190 "isotype switching" evidence=IEA]
[GO:0042405 "nuclear inclusion body" evidence=IEA] [GO:0033674
"positive regulation of kinase activity" evidence=IEA] [GO:0031954
"positive regulation of protein autophosphorylation" evidence=IEA]
[GO:0030870 "Mre11 complex" evidence=IEA] [GO:0008283 "cell
proliferation" evidence=IEA] [GO:0008134 "transcription factor
binding" evidence=IEA] [GO:0007095 "mitotic G2 DNA damage
checkpoint" evidence=IEA] [GO:0006915 "apoptotic process"
evidence=IEA] [GO:0006302 "double-strand break repair"
evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA] [GO:0005657
"replication fork" evidence=IEA] [GO:0004003 "ATP-dependent DNA
helicase activity" evidence=IEA] [GO:0003684 "damaged DNA binding"
evidence=IEA] [GO:0001832 "blastocyst growth" evidence=IEA]
[GO:0000784 "nuclear chromosome, telomeric region" evidence=IEA]
[GO:0000723 "telomere maintenance" evidence=IEA] InterPro:IPR000253
InterPro:IPR008984 Pfam:PF00498 PROSITE:PS50006 SMART:SM00240
InterPro:IPR001357 Pfam:PF00533 GO:GO:0006915 GO:GO:0007095
GO:GO:0005730 GO:GO:0003684 GO:GO:0008283 GO:GO:0050885
Gene3D:2.60.200.20 SUPFAM:SSF49879 GO:GO:0004003 GO:GO:0006302
GO:GO:0045190 SMART:SM00292 SUPFAM:SSF52113 GO:GO:0000784
GO:GO:0000723 GO:GO:0042405 GO:GO:0005657 GO:GO:0031575
GO:GO:0031954 GO:GO:0001832 GO:GO:0030870 GO:GO:0033674
InterPro:IPR016592 PIRSF:PIRSF011869 GeneTree:ENSGT00390000000521
EMBL:CU302311 EMBL:CU137667 Ensembl:ENSSSCT00000006719 OMA:MESEIGR
Uniprot:F1RXF2
Length = 332
Score = 221 (82.9 bits), Expect = 7.1e-16, P = 7.1e-16
Identities = 70/249 (28%), Positives = 113/249 (45%)
Query: 2 VWGLFPIDPLPGEDKYYIFSKGNYKVGRKGCDIIINKDKGVSRVHAEILVDEMISLNPFQ 61
+W L P D Y + + Y VGRK CDI+I D+ +SR HA IL N Q
Sbjct: 1 MWKLIPA-AASARDPYRLLTGVEYIVGRKNCDILIEDDQSISRNHA-ILTANFSITNLSQ 58
Query: 62 DKSSKVSTTRVRIKDCSKYGTFINKNLGSKEKVHEFPNKEATLKDGDLVSFGTGNATYRF 121
+ T IKD SKYGTF+N+ EK+ + TLK GD V+FG + +R
Sbjct: 59 TDEIPILT----IKDNSKYGTFVNE-----EKMRT--DFSQTLKTGDRVTFGVFKSKFRV 107
Query: 122 CYAPLILFVDSFQVNAP--LQEKVSSIGAFITSKFCQECTHILVQHHMRVKGELLDAIVA 179
Y PL+ V+ L + + +G + + +ECTH LV ++V + + A++
Sbjct: 108 EYEPLVACSSCLDVSGKTALSQTILQLGGLTMNNWTEECTH-LVMVSVKVTIKTICALIC 166
Query: 180 KKPLVD----VSWLEVVAEKSIRTDFPGCNSHVTTLIMEGDPVELANVDTLENCMRGYTF 235
+P+V +L+ V K + V + ++L+ +G TF
Sbjct: 167 GRPIVKPEYFTEFLKAVQSKKHPPEIERFYPPVDEPAIVSKNIDLSGRQERRQIFKGKTF 226
Query: 236 LLDSSMKYK 244
+ ++ ++K
Sbjct: 227 VFLNAKQHK 235
>UNIPROTKB|O60934 [details] [associations]
symbol:NBN "Nibrin" species:9606 "Homo sapiens" [GO:0007126
"meiosis" evidence=IEA] [GO:0001832 "blastocyst growth"
evidence=IEA] [GO:0005657 "replication fork" evidence=IEA]
[GO:0006915 "apoptotic process" evidence=IEA] [GO:0008283 "cell
proliferation" evidence=IEA] [GO:0045190 "isotype switching"
evidence=IEA] [GO:0050885 "neuromuscular process controlling
balance" evidence=IEA] [GO:0003684 "damaged DNA binding"
evidence=IC] [GO:0006302 "double-strand break repair"
evidence=IDA;TAS] [GO:0047485 "protein N-terminus binding"
evidence=IPI] [GO:0007050 "cell cycle arrest" evidence=TAS]
[GO:0030174 "regulation of DNA-dependent DNA replication
initiation" evidence=TAS] [GO:0030330 "DNA damage response, signal
transduction by p53 class mediator" evidence=TAS] [GO:0030870
"Mre11 complex" evidence=IDA] [GO:0008134 "transcription factor
binding" evidence=IPI] [GO:0007095 "mitotic G2 DNA damage
checkpoint" evidence=IDA] [GO:0000723 "telomere maintenance"
evidence=IMP] [GO:0042405 "nuclear inclusion body" evidence=IDA]
[GO:0007093 "mitotic cell cycle checkpoint" evidence=IDA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0000077 "DNA damage
checkpoint" evidence=IDA] [GO:0000724 "double-strand break repair
via homologous recombination" evidence=TAS] [GO:0005654
"nucleoplasm" evidence=TAS] [GO:0006281 "DNA repair" evidence=TAS]
[GO:0000784 "nuclear chromosome, telomeric region" evidence=IDA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0031954 "positive regulation of protein
autophosphorylation" evidence=IDA] [GO:0033674 "positive regulation
of kinase activity" evidence=IDA] [GO:0032508 "DNA duplex
unwinding" evidence=IMP] [GO:0004003 "ATP-dependent DNA helicase
activity" evidence=IMP] Reactome:REACT_216 InterPro:IPR000253
InterPro:IPR008984 Pfam:PF00498 PROSITE:PS50006 SMART:SM00240
InterPro:IPR001357 GO:GO:0007126 GO:GO:0006915 GO:GO:0007095
Pathway_Interaction_DB:telomerasepathway EMBL:CH471060
GO:GO:0005654 GO:GO:0005730 GO:GO:0042493 GO:GO:0003684
GO:GO:0008284 GO:GO:0008283 GO:GO:0045665 GO:GO:0050885
GO:GO:0007050 Gene3D:2.60.200.20 SUPFAM:SSF49879
Reactome:REACT_111183 GO:GO:0000724 GO:GO:0045190 MIM:114480
SMART:SM00292 SUPFAM:SSF52113 PROSITE:PS50172 GO:GO:0000784
GO:GO:0000723 Pathway_Interaction_DB:bard1pathway GO:GO:0042405
Orphanet:145 GO:GO:0030330 GO:GO:0005657 GO:GO:0030174
GO:GO:0031575 GO:GO:0032508 GO:GO:0048145 GO:GO:0031954
GO:GO:0001832 MIM:609135 GO:GO:0030870 GO:GO:0033674 CTD:4683
eggNOG:NOG84999 HOVERGEN:HBG053070 KO:K10867 OrthoDB:EOG45MN4Q
InterPro:IPR013908 InterPro:IPR016592 Pfam:PF08599
PIRSF:PIRSF011869 EMBL:AF051334 EMBL:AF058696 EMBL:AB013139
EMBL:AF069291 EMBL:AK312410 EMBL:AK223256 EMBL:AY566246
EMBL:BC108650 EMBL:BC136802 EMBL:BC136803 EMBL:BX640816
IPI:IPI00299463 PIR:T00393 RefSeq:NP_002476.2 UniGene:Hs.492208
ProteinModelPortal:O60934 SMR:O60934 DIP:DIP-33605N IntAct:O60934
MINT:MINT-203482 STRING:O60934 PhosphoSite:O60934 PaxDb:O60934
PRIDE:O60934 Ensembl:ENST00000265433 Ensembl:ENST00000409330
GeneID:4683 KEGG:hsa:4683 UCSC:uc003yei.1 GeneCards:GC08M091015
HGNC:HGNC:7652 HPA:CAB003836 HPA:HPA001429 MIM:251260 MIM:602667
neXtProt:NX_O60934 Orphanet:647 PharmGKB:PA31457 InParanoid:O60934
OMA:KLPHIIG GenomeRNAi:4683 NextBio:18054 ArrayExpress:O60934
Bgee:O60934 CleanEx:HS_NBN Genevestigator:O60934
GermOnline:ENSG00000104320 Uniprot:O60934
Length = 754
Score = 223 (83.6 bits), Expect = 8.2e-16, Sum P(2) = 8.2e-16
Identities = 68/249 (27%), Positives = 118/249 (47%)
Query: 2 VWGLFPIDPLPGEDKYYIFSKGNYKVGRKGCDIIINKDKGVSRVHAEILVDEMISLNPFQ 61
+W L P G + Y + + Y VGRK C I+I D+ +SR HA + + ++ N Q
Sbjct: 1 MWKLLPAAGPAGGEPYRLLTGVEYVVGRKNCAILIENDQSISRNHAVLTANFSVT-NLSQ 59
Query: 62 DKSSKVSTTRVRIKDCSKYGTFINKNLGSKEKVHEFPNKEATLKDGDLVSFGTGNATYRF 121
V T +KD SKYGTF+N+ EK+ ++ TLK GD ++FG + +R
Sbjct: 60 TDEIPVLT----LKDNSKYGTFVNE-----EKMQNGFSR--TLKSGDGITFGVFGSKFRI 108
Query: 122 CYAPLILFVDSFQVNAP--LQEKVSSIGAFITSKFCQECTHILVQHHMRVKGELLDAIVA 179
Y PL+ V+ L + + +G F + + +ECTH LV ++V + + A++
Sbjct: 109 EYEPLVACSSCLDVSGKTALNQAILQLGGFTVNNWTEECTH-LVMVSVKVTIKTICALIC 167
Query: 180 KKPLVDVSWL-EVVAEKSIRTDFPGCNSHVTTL---IMEGDPVELANVDTLENCMRGYTF 235
+P+V + E + + P S L + V+L+ + +G TF
Sbjct: 168 GRPIVKPEYFTEFLKAVESKKQPPQIESFYPPLDEPSIGSKNVDLSGRQERKQIFKGKTF 227
Query: 236 LLDSSMKYK 244
+ ++ ++K
Sbjct: 228 IFLNAKQHK 236
Score = 55 (24.4 bits), Expect = 8.2e-16, Sum P(2) = 8.2e-16
Identities = 20/85 (23%), Positives = 39/85 (45%)
Query: 488 QNLVVRDLNVASTISSTANNGVL-NFKRFRKTNIQSGNSFSSLIPFSKYPYKDSDNGTE- 545
++LV+++ + + G L NFK+F+K +I S + TE
Sbjct: 660 RSLVIKNSTSRNPSGINDDYGQLKNFKKFKKVTYPGAGKLPHIIGGSDLIAHHARKNTEL 719
Query: 546 E--MAVSMKEEKKRKQMEALAEDMF 568
E + M+ + + + E+LA+D+F
Sbjct: 720 EEWLRQEMEVQNQHAKEESLADDLF 744
>UNIPROTKB|Q641A9 [details] [associations]
symbol:LOC403373 "LOC403373 protein" species:8355 "Xenopus
laevis" [GO:0000723 "telomere maintenance" evidence=ISS]
[GO:0006302 "double-strand break repair" evidence=ISS] [GO:0007093
"mitotic cell cycle checkpoint" evidence=ISS] [GO:0007095 "mitotic
G2 DNA damage checkpoint" evidence=ISS] [GO:0008134 "transcription
factor binding" evidence=ISS] [GO:0030870 "Mre11 complex"
evidence=ISS] [GO:0042405 "nuclear inclusion body" evidence=ISS]
[GO:0045190 "isotype switching" evidence=ISS] [GO:0047485 "protein
N-terminus binding" evidence=ISS] [GO:0048145 "regulation of
fibroblast proliferation" evidence=ISS] InterPro:IPR000253
InterPro:IPR008984 Pfam:PF00498 PROSITE:PS50006 SMART:SM00240
InterPro:IPR001357 GO:GO:0007095 Gene3D:2.60.200.20 SUPFAM:SSF49879
GO:GO:0006302 GO:GO:0045190 GO:GO:0008134 SUPFAM:SSF52113
GO:GO:0000723 GO:GO:0047485 GO:GO:0042405 GO:GO:0031575
GO:GO:0048145 GO:GO:0030870 HOVERGEN:HBG053070 InterPro:IPR016592
PIRSF:PIRSF011869 EMBL:BC082430 UniGene:Xl.9528
ProteinModelPortal:Q641A9 Uniprot:Q641A9
Length = 555
Score = 216 (81.1 bits), Expect = 2.0e-14, P = 2.0e-14
Identities = 70/251 (27%), Positives = 122/251 (48%)
Query: 17 YYIFSKGNYKVGRKGCDIIINKDKGVSRVHAEILVDEMISLNPFQDKSSKVSTTRVRIKD 76
Y+ + +Y VGRK C I+I +D+ +SR HA + V S N Q ++ V + IKD
Sbjct: 20 YHFLTGTDYVVGRKNCAILIPEDQSISRCHATLSVSHT-SANLGQTNAASV----LSIKD 74
Query: 77 CSKYGTFINKNLGSKEKVHEFPNKEATLKDGDLVSFGTGNATYRFCYAPLILF---VDSF 133
SKYGT +N G K P LK GD V+FG N+ YR Y PL++ +D+
Sbjct: 75 SSKYGTTVN---GDKMN----PAVPRNLKSGDKVTFGVFNSKYRVEYEPLVVCSSCLDNS 127
Query: 134 QVNAPLQEKVSSIGAFITSKFCQECTHILVQHHMRVKGELLDAIVAKKPLVDVSW----L 189
+ N+ L + + +G + + + ++ TH LV ++V + + A++ KP++ + L
Sbjct: 128 EKNS-LNQNLIHLGGHVLNNWTEKSTH-LVMTSIKVTIKTICALICCKPIIKPDYFCELL 185
Query: 190 EVVAEKSIRTDFPGCNSHVTTLIMEGDPVELANVDTLENCMRGYTFLLDSSMKYKYGDQL 249
+ EK D+ V + + ++L+ ++ + FL ++ +YK +L
Sbjct: 186 RAIQEKRPLPDYRSFIPSVDEPSLTPESLDLSENVKRKSIFKDKVFLFLNAKQYK---KL 242
Query: 250 QSLLEVSGAKT 260
+ G KT
Sbjct: 243 SPAVLFGGGKT 253
>FB|FBgn0261530 [details] [associations]
symbol:nbs "nbs" species:7227 "Drosophila melanogaster"
[GO:0000723 "telomere maintenance" evidence=IMP] [GO:0008630
"intrinsic apoptotic signaling pathway in response to DNA damage"
evidence=IMP] [GO:0042770 "signal transduction in response to DNA
damage" evidence=IMP] [GO:0051276 "chromosome organization"
evidence=IMP] [GO:0016233 "telomere capping" evidence=IDA;IMP]
[GO:0006974 "response to DNA damage stimulus" evidence=IMP]
[GO:0045003 "double-strand break repair via synthesis-dependent
strand annealing" evidence=IMP] [GO:0007095 "mitotic G2 DNA damage
checkpoint" evidence=IMP] InterPro:IPR000253 InterPro:IPR008984
Pfam:PF00498 PROSITE:PS50006 SMART:SM00240 InterPro:IPR001357
Pfam:PF00533 GO:GO:0007095 GO:GO:0008630 EMBL:AE014296
Gene3D:2.60.200.20 SUPFAM:SSF49879 GO:GO:0042770 SMART:SM00292
SUPFAM:SSF52113 GO:GO:0016233 GO:GO:0045003 KO:K10867
InterPro:IPR016592 PIRSF:PIRSF011869 FlyBase:FBgn0261530
RefSeq:NP_651973.4 ProteinModelPortal:Q9VT40 SMR:Q9VT40
IntAct:Q9VT40 MINT:MINT-1701458 STRING:Q9VT40 GeneID:44259
KEGG:dme:Dmel_CG6754 CTD:44259 InParanoid:Q9VT40 GenomeRNAi:44259
NextBio:837048 Bgee:Q9VT40 Uniprot:Q9VT40
Length = 813
Score = 162 (62.1 bits), Expect = 8.0e-08, Sum P(3) = 8.0e-08
Identities = 72/263 (27%), Positives = 125/263 (47%)
Query: 14 EDKYYIF-SKGNYKVGRKGCDIIINKDKGVSRVHAEILVDEMISLNPFQDKSSKVSTTRV 72
++K+ +F K Y +GR D+I+ +D +SR HA++L+ Q ++ T +
Sbjct: 8 DEKFVLFPGKKVYTIGRLATDLIVAQDLSISRNHAQLLI---------QTEADGDDT--L 56
Query: 73 RIKDC-SKYGTFI-NKNLGSKEKVHEFPNKEAT-LKDGDLVSFGTGNATYRFCYAPLILF 129
I+D S+YGTFI KN +K + P K +T L G + FG + ++ L+
Sbjct: 57 HIEDLGSRYGTFIFPKN---SQKPRKVPAKTSTPLPVGTRLRFGANMSIWQVTQLKLVTT 113
Query: 130 VDSFQVNAPLQE---KVSSIGAFITSKFCQECTHILVQHHMRVKGELLDAIVAKKPLVDV 186
V + + +QE + +G +TS + +EC+H L + + V +LL A++ KP+V
Sbjct: 114 VSAL-TRSEVQELTKMLEPMGGTVTSNWTEECSH-LTMNEVSVTVKLLHAMLENKPIVTF 171
Query: 187 S-WLEVV-AEKSI--RTDFPGCNSHVTTLIMEGDPVELANVDTLENCMRGYTFLLDSSMK 242
W +++ A +SI + +P + T I V T G TF+ M
Sbjct: 172 PYWRKMLQAAQSIHVKEGWPQPEDYQPTNI----DVTWRPERT--RLFAGKTFVF---MN 222
Query: 243 YKYGDQLQSLLEVSGAKTLSIES 265
K+ D S+++ +GA I S
Sbjct: 223 RKHFDMYGSVVQKAGATCKDINS 245
Score = 44 (20.5 bits), Expect = 8.0e-08, Sum P(3) = 8.0e-08
Identities = 12/33 (36%), Positives = 19/33 (57%)
Query: 489 NLVVRDLN-VASTISSTANN--GVLNFKRFRKT 518
N+V+R V +++ + N G NFK+F KT
Sbjct: 756 NIVIRSQEEVDASLEDSVNKHGGRKNFKKFVKT 788
Score = 41 (19.5 bits), Expect = 8.0e-08, Sum P(3) = 8.0e-08
Identities = 13/46 (28%), Positives = 22/46 (47%)
Query: 348 DAETEEETSPGHATAAVDNEEAPTYLSKEEISINHAVNRSDNQHET 393
D+ EE+ +P A A V + EE S++ V + ++H T
Sbjct: 419 DSSLEEDVTPAPAPAPVQRVTRQSKAIAEEKSVHPPVPAA-SKHIT 463
>ZFIN|ZDB-GENE-041008-35 [details] [associations]
symbol:nbn "nibrin" species:7955 "Danio rerio"
[GO:0003674 "molecular_function" evidence=ND] [GO:0005694
"chromosome" evidence=IEA] [GO:0007049 "cell cycle" evidence=IEA]
[GO:0006281 "DNA repair" evidence=IEA] [GO:0000781 "chromosome,
telomeric region" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0006974 "response to DNA damage stimulus" evidence=IEA]
[GO:0007126 "meiosis" evidence=IEA] InterPro:IPR000253
InterPro:IPR008984 Pfam:PF00498 PROSITE:PS50006 SMART:SM00240
InterPro:IPR001357 ZFIN:ZDB-GENE-041008-35 Gene3D:2.60.200.20
SUPFAM:SSF49879 SUPFAM:SSF52113 InterPro:IPR013908
InterPro:IPR016592 Pfam:PF08599 PIRSF:PIRSF011869
GeneTree:ENSGT00390000000521 EMBL:BX004983 IPI:IPI00993701
Ensembl:ENSDART00000131238 ArrayExpress:E9QF00 Bgee:E9QF00
Uniprot:E9QF00
Length = 857
Score = 139 (54.0 bits), Expect = 5.7e-07, Sum P(3) = 5.7e-07
Identities = 55/225 (24%), Positives = 105/225 (46%)
Query: 28 GRKGCDIIINKDKGVSRVHAEILVDEMISLNPFQDKSSKVSTTRVRIKDCSKYGTFINKN 87
G + ++ ++ V R + EIL+ S++ + V+ V +KD SKYGTF+N
Sbjct: 10 GGESVILLAGQEYVVGRKNCEILLTNDQSISRVHAVLT-VTEQAVTLKDSSKYGTFVN-- 66
Query: 88 LGSKEKVHEFPNKEATLKDGDLVSFGTGNATYRF---CYAPLILFVDSFQVNAPLQEKVS 144
G EK+ K TL+ G ++FG + + C VD+ + L + +
Sbjct: 67 -G--EKLESGSTK--TLQTGYKITFGVFQSKFSLEKECIVVCSSCVDN-EGKVTLSQDIR 120
Query: 145 SIGAFITSKFCQECTHILVQHHMRVKGELLDAIVAKKPLVDVSWLEVVAEKSIRTDFP-- 202
S+G + S + +CTH LV ++V + + A++ +P+V ++ ++ K+++ P
Sbjct: 121 SVGGRLVSSWTSDCTH-LVMPTVKVTIKTICALLCCRPIVKPAFFSALS-KAVQQKLPLP 178
Query: 203 ---GCNSHVTTLIMEGDPVELANVDTLENCMRGYTFLLDSSMKYK 244
+ + D V+L+ ++ +G TFL SS + K
Sbjct: 179 KAERFRPQIDEPSLARDDVDLSARPERKSLFKGKTFLFLSSKQMK 223
Score = 113 (44.8 bits), Expect = 0.00032, Sum P(3) = 0.00032
Identities = 29/84 (34%), Positives = 42/84 (50%)
Query: 2 VWGLFPIDPLPGEDKYYIFSKGNYKVGRKGCDIIINKDKGVSRVHAEILVDEMISLNPFQ 61
+W L P + G + + + Y VGRK C+I++ D+ +SRVHA + V E
Sbjct: 1 MWKLQPTES--GGESVILLAGQEYVVGRKNCEILLTNDQSISRVHAVLTVTEQA------ 52
Query: 62 DKSSKVSTTRVRIKDCSKYGTFIN 85
V +KD SKYGTF+N
Sbjct: 53 ----------VTLKDSSKYGTFVN 66
Score = 64 (27.6 bits), Expect = 5.7e-07, Sum P(3) = 5.7e-07
Identities = 20/69 (28%), Positives = 33/69 (47%)
Query: 504 TANNGVLNFKRFRKTNIQSGNSFSSLIPFSKYPY--KDSDNGTEE-MAVSMKEEKKRKQM 560
T N N KRFRK N+ + +I S + + EE + + +EEK ++
Sbjct: 741 THNPNDKNVKRFRKKNVPGFDGLPKIIGGSDLVAHNRSKHSELEEWLRQAAEEEKLNERE 800
Query: 561 EALAEDMFN 569
E L +D+F+
Sbjct: 801 ETLGDDLFS 809
Score = 38 (18.4 bits), Expect = 5.7e-07, Sum P(3) = 5.7e-07
Identities = 10/40 (25%), Positives = 18/40 (45%)
Query: 443 RDGSNSIANRSEDRRGTGFRDGNNCMTTSREKADLERENS 482
+ S++I + DR G + + + R DLE +S
Sbjct: 615 QSSSSNIQSMQLDRAGPAVTNQDTQTQSKRSPPDLEAHSS 654
>UNIPROTKB|E5RGN7 [details] [associations]
symbol:NBN "Nibrin" species:9606 "Homo sapiens" [GO:0001832
"blastocyst growth" evidence=IEA] [GO:0003684 "damaged DNA binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005657
"replication fork" evidence=IEA] [GO:0006915 "apoptotic process"
evidence=IEA] [GO:0008283 "cell proliferation" evidence=IEA]
[GO:0045190 "isotype switching" evidence=IEA] [GO:0050885
"neuromuscular process controlling balance" evidence=IEA]
InterPro:IPR001357 GO:GO:0005634 GO:GO:0006915 GO:GO:0042493
GO:GO:0003684 GO:GO:0008284 GO:GO:0008283 GO:GO:0045665
GO:GO:0050885 GO:GO:0045190 SUPFAM:SSF52113 GO:GO:0005657
GO:GO:0048145 GO:GO:0031576 GO:GO:0001832 EMBL:AF069291
HGNC:HGNC:7652 IPI:IPI00978422 ProteinModelPortal:E5RGN7 SMR:E5RGN7
Ensembl:ENST00000517337 ArrayExpress:E5RGN7 Bgee:E5RGN7
Uniprot:E5RGN7
Length = 92
Score = 113 (44.8 bits), Expect = 9.6e-06, P = 9.6e-06
Identities = 25/84 (29%), Positives = 45/84 (53%)
Query: 103 TLKDGDLVSFGTGNATYRFCYAPLILFVDSFQVNAP--LQEKVSSIGAFITSKFCQECTH 160
TLK GD ++FG + +R Y PL+ V+ L + + +G F + + +ECTH
Sbjct: 8 TLKSGDGITFGVFGSKFRIEYEPLVACSSCLDVSGKTALNQAILQLGGFTVNNWTEECTH 67
Query: 161 ILVQHHMRVKGELLDAIVAKKPLV 184
LV ++V + + A++ +P+V
Sbjct: 68 -LVMVSVKVTIKTICALICGRPIV 90
>UNIPROTKB|E5RGR7 [details] [associations]
symbol:NBN "Nibrin" species:9606 "Homo sapiens" [GO:0001832
"blastocyst growth" evidence=IEA] [GO:0003684 "damaged DNA binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005657
"replication fork" evidence=IEA] [GO:0006915 "apoptotic process"
evidence=IEA] [GO:0008283 "cell proliferation" evidence=IEA]
[GO:0045190 "isotype switching" evidence=IEA] [GO:0050885
"neuromuscular process controlling balance" evidence=IEA]
InterPro:IPR001357 Pfam:PF00533 GO:GO:0005634 GO:GO:0006915
GO:GO:0042493 GO:GO:0003684 GO:GO:0008284 GO:GO:0008283
GO:GO:0045665 GO:GO:0050885 GO:GO:0045190 SMART:SM00292
SUPFAM:SSF52113 GO:GO:0005657 GO:GO:0048145 GO:GO:0031576
GO:GO:0001832 EMBL:AF069291 HGNC:HGNC:7652 IPI:IPI01012909
ProteinModelPortal:E5RGR7 SMR:E5RGR7 Ensembl:ENST00000517772
ArrayExpress:E5RGR7 Bgee:E5RGR7 Uniprot:E5RGR7
Length = 165
Score = 117 (46.2 bits), Expect = 2.1e-05, P = 2.1e-05
Identities = 35/148 (23%), Positives = 68/148 (45%)
Query: 103 TLKDGDLVSFGTGNATYRFCYAPLILFVDSFQVNAP--LQEKVSSIGAFITSKFCQECTH 160
TLK GD ++FG + +R Y PL+ V+ L + + +G F + + +ECTH
Sbjct: 8 TLKSGDGITFGVFGSKFRIEYEPLVACSSCLDVSGKTALNQAILQLGGFTVNNWTEECTH 67
Query: 161 ILVQHHMRVKGELLDAIVAKKPLVDVSWL-EVVAEKSIRTDFPGCNSHVTTL---IMEGD 216
LV ++V + + A++ +P+V + E + + P S L +
Sbjct: 68 -LVMVSVKVTIKTICALICGRPIVKPEYFTEFLKAVESKKQPPQIESFYPPLDEPSIGSK 126
Query: 217 PVELANVDTLENCMRGYTFLLDSSMKYK 244
V+L+ + +G TF+ ++ ++K
Sbjct: 127 NVDLSGRQERKQIFKGKTFIFLNAKQHK 154
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.314 0.131 0.377 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 589 562 0.0010 119 3 11 23 0.44 34
35 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 16
No. of states in DFA: 614 (65 KB)
Total size of DFA: 304 KB (2157 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 52.07u 0.10s 52.17t Elapsed: 00:00:02
Total cpu time: 52.08u 0.10s 52.18t Elapsed: 00:00:02
Start: Mon May 20 18:42:17 2013 End: Mon May 20 18:42:19 2013