BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 007803
         (589 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1LGQ|A Chain A, Crystal Structure Of The Fha Domain Of The Chfr Mitotic
          Checkpoint Protein
 pdb|1LGQ|B Chain B, Crystal Structure Of The Fha Domain Of The Chfr Mitotic
          Checkpoint Protein
          Length = 112

 Score = 33.9 bits (76), Expect = 0.29,   Method: Composition-based stats.
 Identities = 29/86 (33%), Positives = 42/86 (48%), Gaps = 17/86 (19%)

Query: 3  WG-LFPIDPLPGEDKYYIFSKGNYKVGRK-GCDIIINKDKGVSRVHAEILVDEMISLNPF 60
          WG L  +    GE  + +  K  + +GR+ GCD+    +K VS  H  I+VDE       
Sbjct: 4  WGRLLRLGAEEGE-PHVLLRKREWTIGRRRGCDLSFPSNKLVSGDHCRIVVDE------- 55

Query: 61 QDKSSKVSTTRVRIKDCSKYGTFINK 86
            KS +V+     ++D S  GT INK
Sbjct: 56 --KSGQVT-----LEDTSTSGTVINK 74


>pdb|1LGP|A Chain A, Crystal Structure Of The Fha Domain Of The Chfr Mitotic
          Checkpoint Protein Complexed With Tungstate
          Length = 116

 Score = 33.5 bits (75), Expect = 0.33,   Method: Composition-based stats.
 Identities = 29/86 (33%), Positives = 42/86 (48%), Gaps = 17/86 (19%)

Query: 3  WG-LFPIDPLPGEDKYYIFSKGNYKVGRK-GCDIIINKDKGVSRVHAEILVDEMISLNPF 60
          WG L  +    GE  + +  K  + +GR+ GCD+    +K VS  H  I+VDE       
Sbjct: 4  WGRLLRLGAEEGE-PHVLLRKREWTIGRRRGCDLSFPSNKLVSGDHCRIVVDE------- 55

Query: 61 QDKSSKVSTTRVRIKDCSKYGTFINK 86
            KS +V+     ++D S  GT INK
Sbjct: 56 --KSGQVT-----LEDTSTSGTVINK 74


>pdb|1O0X|A Chain A, Crystal Structure Of Methionine Aminopeptidase (Tm1478)
           From Thermotoga Maritima At 1.90 A Resolution
          Length = 262

 Score = 32.7 bits (73), Expect = 0.56,   Method: Compositional matrix adjust.
 Identities = 19/46 (41%), Positives = 25/46 (54%), Gaps = 4/46 (8%)

Query: 79  KYGTFINKNLGSKEKVHEFPNKEATLKDGDLVSFGTGNATYRFCYA 124
           KY T ++ N   +E VH  P KE   K+GD+VS   G A Y+  Y 
Sbjct: 76  KYATCVSVN---EEVVHGLPLKEKVFKEGDIVSVDVG-AVYQGLYG 117


>pdb|3EYJ|A Chain A, Structure Of Influenza Haemagglutinin In Complex With An
           Inhibitor Of Membrane Fusion
 pdb|3EYK|A Chain A, Structure Of Influenza Haemagglutinin In Complex With An
           Inhibitor Of Membrane Fusion
          Length = 323

 Score = 28.9 bits (63), Expect = 7.4,   Method: Compositional matrix adjust.
 Identities = 18/64 (28%), Positives = 31/64 (48%), Gaps = 8/64 (12%)

Query: 19  IFSKGNYKVGRKGCDIIINKDKGVSRVHAEILVDE--MISLNPFQDKSSKVSTTRVRIKD 76
           I  +G+YK+ +     ++  DK +    +  L D+  + S  PFQ+ S      R+ I +
Sbjct: 245 IAPRGHYKISKSTKSTVLKSDKRIGSCTSPCLTDKGSIQSDKPFQNVS------RIAIGN 298

Query: 77  CSKY 80
           C KY
Sbjct: 299 CPKY 302


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.314    0.131    0.377 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,462,609
Number of Sequences: 62578
Number of extensions: 661722
Number of successful extensions: 1119
Number of sequences better than 100.0: 16
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 1114
Number of HSP's gapped (non-prelim): 16
length of query: 589
length of database: 14,973,337
effective HSP length: 104
effective length of query: 485
effective length of database: 8,465,225
effective search space: 4105634125
effective search space used: 4105634125
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 54 (25.4 bits)