BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 007803
(589 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9R207|NBN_MOUSE Nibrin OS=Mus musculus GN=Nbn PE=1 SV=1
Length = 751
Score = 90.5 bits (223), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 69/250 (27%), Positives = 115/250 (46%), Gaps = 21/250 (8%)
Query: 2 VWGLFPI-DPLPGEDKYYIFSKGNYKVGRKGCDIIINKDKGVSRVHAEILVDEMISLNPF 60
+W L P PGE Y + + Y VGRK C I+I D+ +SR HA + V+ P
Sbjct: 1 MWKLLPAAGAAPGEP-YRLLAGVEYVVGRKNCGILIENDQSISRNHAVLTVN-----FPV 54
Query: 61 QDKSSKVSTTRVRIKDCSKYGTFINKNLGSKEKVHEFPNKEATLKDGDLVSFGTGNATYR 120
S + IKD SKYGTF+N +EK+ TLK GD V+FG + +R
Sbjct: 55 TSLSQTDEIPTLTIKDNSKYGTFVN-----EEKMQT--GLSCTLKTGDRVTFGVFESKFR 107
Query: 121 FCYAPLILFVDSFQVNAP--LQEKVSSIGAFITSKFCQECTHILVQHHMRVKGELLDAIV 178
Y PL++ V+ L + + +G + + +ECTH LV ++V + + A++
Sbjct: 108 VEYEPLVVCSSCLDVSGKTVLNQAILQLGGLTANNWTEECTH-LVMSAVKVTIKTICALI 166
Query: 179 AKKPLVDVSW----LEVVAEKSIRTDFPGCNSHVTTLIMEGDPVELANVDTLENCMRGYT 234
+P++ + L+ V K D + + V+L+ + +G T
Sbjct: 167 CGRPIIKPEYFSEFLKAVESKKQPPDIESFYPPIDEPAIGSKSVDLSGRHERKQIFKGKT 226
Query: 235 FLLDSSMKYK 244
F+ ++ ++K
Sbjct: 227 FVFLNAKQHK 236
>sp|Q5RCV3|NBN_PONAB Nibrin OS=Pongo abelii GN=NBN PE=2 SV=2
Length = 754
Score = 90.1 bits (222), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 69/249 (27%), Positives = 117/249 (46%), Gaps = 19/249 (7%)
Query: 2 VWGLFPIDPLPGEDKYYIFSKGNYKVGRKGCDIIINKDKGVSRVHAEILVDEMISLNPFQ 61
+W L P G + Y + + Y VGRK C I+I KD+ +SR HA +L N Q
Sbjct: 1 MWKLLPAAGPAGGEPYRLLTGVEYVVGRKNCAILIEKDQSISRNHA-VLTANFSVTNLSQ 59
Query: 62 DKSSKVSTTRVRIKDCSKYGTFINKNLGSKEKVHEFPNKEATLKDGDLVSFGTGNATYRF 121
V + +KD SKYGTF+N +EK+ ++ TLK GD ++FG + +R
Sbjct: 60 TDEIPV----LALKDNSKYGTFVN-----EEKMQNGFSR--TLKSGDSITFGVFESKFRI 108
Query: 122 CYAPLILFVDSFQVNA--PLQEKVSSIGAFITSKFCQECTHILVQHHMRVKGELLDAIVA 179
Y PL+ V+ L + + +G F + + +ECTH LV ++V + + A++
Sbjct: 109 EYEPLVACSSCLDVSGKTALNQAILQLGGFTVNNWTEECTH-LVMVSVKVTIKTICALIC 167
Query: 180 KKPLVDVSWL-EVVAEKSIRTDFPGCNSHVTTL---IMEGDPVELANVDTLENCMRGYTF 235
+P+V + E + + P S L + V+L+ + +G TF
Sbjct: 168 GRPIVKPEYFTEFLKAVQSKKQLPQIESFYPPLDEPSIGSKNVDLSGRQERKQIFKGKTF 227
Query: 236 LLDSSMKYK 244
+ ++ ++K
Sbjct: 228 IFLNAKQHK 236
>sp|Q9DE07|NBN_CHICK Nibrin OS=Gallus gallus GN=NBN PE=1 SV=1
Length = 753
Score = 89.7 bits (221), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 68/249 (27%), Positives = 115/249 (46%), Gaps = 22/249 (8%)
Query: 2 VWGLFPIDPLPGEDKYYIFSKGNYKVGRKGCDIIINKDKGVSRVHAEILVDEMISLNPFQ 61
+W L P PGE + + Y VGRK C +I D+ +SR HA + V P
Sbjct: 1 MWKLVPAAG-PGEP-FRLLVGTEYVVGRKNCAFLIQDDQSISRSHAVLTVS-----RPET 53
Query: 62 DKSSKVSTTRVRIKDCSKYGTFINKNLGSKEKVHEFPNKEATLKDGDLVSFGTGNATYRF 121
S VS + IKD SKYGTF+N GSK +L+ GD V+FG + +R
Sbjct: 54 THSQSVSVPVLTIKDTSKYGTFVN---GSK-----LSGASRSLQSGDRVNFGVFESKFRV 105
Query: 122 CYAPLILFVDSFQV--NAPLQEKVSSIGAFITSKFCQECTHILVQHHMRVKGELLDAIVA 179
Y L++ V L E + +G + +++ +ECTH L+ ++V + + A++
Sbjct: 106 EYESLVVCSSCLDVAQKTALNEAIQQLGGLVVNEWTKECTH-LIMESVKVTVKTICALIC 164
Query: 180 KKPLVDVSWL-EVVAEKSIRTDFPGCNSHVTTL---IMEGDPVELANVDTLENCMRGYTF 235
+P+V + E++ R P S ++ + D ++L+ + G TF
Sbjct: 165 GRPIVKPEFFSELMKAVQSRQQLPTPESFYPSVDEPAIGIDNMDLSGHPERKKIFSGKTF 224
Query: 236 LLDSSMKYK 244
+ ++ ++K
Sbjct: 225 VFLTAKQHK 233
>sp|O60934|NBN_HUMAN Nibrin OS=Homo sapiens GN=NBN PE=1 SV=1
Length = 754
Score = 87.0 bits (214), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 59/185 (31%), Positives = 93/185 (50%), Gaps = 15/185 (8%)
Query: 2 VWGLFPIDPLPGEDKYYIFSKGNYKVGRKGCDIIINKDKGVSRVHAEILVDEMISLNPFQ 61
+W L P G + Y + + Y VGRK C I+I D+ +SR HA +L N Q
Sbjct: 1 MWKLLPAAGPAGGEPYRLLTGVEYVVGRKNCAILIENDQSISRNHA-VLTANFSVTNLSQ 59
Query: 62 DKSSKVSTTRVRIKDCSKYGTFINKNLGSKEKVHEFPNKEATLKDGDLVSFGTGNATYRF 121
V T +KD SKYGTF+N +EK+ ++ TLK GD ++FG + +R
Sbjct: 60 TDEIPVLT----LKDNSKYGTFVN-----EEKMQNGFSR--TLKSGDGITFGVFGSKFRI 108
Query: 122 CYAPLILFVDSFQVNA--PLQEKVSSIGAFITSKFCQECTHILVQHHMRVKGELLDAIVA 179
Y PL+ V+ L + + +G F + + +ECTH LV ++V + + A++
Sbjct: 109 EYEPLVACSSCLDVSGKTALNQAILQLGGFTVNNWTEECTH-LVMVSVKVTIKTICALIC 167
Query: 180 KKPLV 184
+P+V
Sbjct: 168 GRPIV 172
>sp|Q9JIL9|NBN_RAT Nibrin OS=Rattus norvegicus GN=Nbn PE=1 SV=2
Length = 750
Score = 85.5 bits (210), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 68/250 (27%), Positives = 115/250 (46%), Gaps = 21/250 (8%)
Query: 2 VWGLFPI-DPLPGEDKYYIFSKGNYKVGRKGCDIIINKDKGVSRVHAEILVDEMISLNPF 60
+W L P PGE + + Y VGRK C I+I D+ +SR HA + V+ P
Sbjct: 1 MWKLLPAASAAPGEP-CRLLAGVEYIVGRKNCAILIENDQSISRNHAVLRVN-----FPV 54
Query: 61 QDKSSKVSTTRVRIKDCSKYGTFINKNLGSKEKVHEFPNKEATLKDGDLVSFGTGNATYR 120
S + IKD SKYGTFIN +EK+ +TLK GD V+FG + +R
Sbjct: 55 TSLSQTDEIPTLTIKDNSKYGTFIN-----EEKMQN--GLSSTLKTGDRVTFGVFESKFR 107
Query: 121 FCYAPLILFVDSFQVNAP--LQEKVSSIGAFITSKFCQECTHILVQHHMRVKGELLDAIV 178
Y PL++ V+ L + + +G + + +ECTH L ++V + + A++
Sbjct: 108 VEYEPLVVCSSCLDVSGKTVLNQAILQLGGLTANSWTEECTH-LAMSSVKVTIKTICALI 166
Query: 179 AKKPLVDVSW----LEVVAEKSIRTDFPGCNSHVTTLIMEGDPVELANVDTLENCMRGYT 234
+P+V + L+ V K+ + + + V+L+ + +G T
Sbjct: 167 CGRPIVKPEYFSEFLKAVESKTQPPEIESFYPPIDEPAIGNKSVDLSGRRERKQIFKGKT 226
Query: 235 FLLDSSMKYK 244
F+ ++ ++K
Sbjct: 227 FVFLNAKQHK 236
>sp|Q5I2W8|NBN_DANRE Nibrin OS=Danio rerio GN=nbn PE=2 SV=2
Length = 818
Score = 78.6 bits (192), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 65/251 (25%), Positives = 116/251 (46%), Gaps = 36/251 (14%)
Query: 2 VWGLFPIDPLPGEDKYYIFSKGNYKVGRKGCDIIINKDKGVSRVHAEILVDEMISLNPFQ 61
+W L P + G + + + Y VGRK C+I++ D+ +SRVHA + V E
Sbjct: 1 MWKLQPTES--GGESVILLAGQEYVVGRKNCEILLTNDQSISRVHAVLTVTEQA------ 52
Query: 62 DKSSKVSTTRVRIKDCSKYGTFINKNLGSKEKVHEFPNKEATLKDGDLVSFGTGNATYRF 121
V +KD SKYGTF+N EK+ K TL+ G ++FG + +
Sbjct: 53 ----------VTLKDSSKYGTFVN-----GEKLESGSTK--TLQTGYKITFGVFQSKFSL 95
Query: 122 ---CYAPLILFVDSFQVNAPLQEKVSSIGAFITSKFCQECTHILVQHHMRVKGELLDAIV 178
C VD+ + L + + S+G + S + +CTH LV ++V + + A++
Sbjct: 96 EKECIVVCSSCVDN-EGKVTLSQDIRSVGGRLVSSWTSDCTH-LVMPTVKVTIKTICALL 153
Query: 179 AKKPLVDVSWLEVVAEKSIRTDFPGCNS-----HVTTLIMEGDPVELANVDTLENCMRGY 233
+P+V ++ ++ K+++ P + + + D V+L+ ++ +G
Sbjct: 154 CCRPIVKPAFFSALS-KAVQQKLPLPKAERFRPQIDEPSLARDDVDLSARPERKSLFKGK 212
Query: 234 TFLLDSSMKYK 244
TFL SS + K
Sbjct: 213 TFLFLSSKQMK 223
>sp|Q5RF77|CHFR_PONAB E3 ubiquitin-protein ligase CHFR OS=Pongo abelii GN=CHFR PE=2
SV=1
Length = 571
Score = 35.8 bits (81), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 41/86 (47%), Gaps = 17/86 (19%)
Query: 3 WG-LFPIDPLPGEDKYYIFSKGNYKVGRK-GCDIIINKDKGVSRVHAEILVDEMISLNPF 60
WG L + GE Y + K + +GR+ GCD+ +K VS H I VDE
Sbjct: 16 WGRLLRLGAEEGE-PYVLLRKREWTIGRRRGCDLSFPSNKLVSGDHCRIAVDE------- 67
Query: 61 QDKSSKVSTTRVRIKDCSKYGTFINK 86
KS +V+ ++D S GT INK
Sbjct: 68 --KSGQVT-----LEDTSTSGTVINK 86
>sp|Q96EP1|CHFR_HUMAN E3 ubiquitin-protein ligase CHFR OS=Homo sapiens GN=CHFR PE=1
SV=2
Length = 664
Score = 35.4 bits (80), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 37/73 (50%), Gaps = 15/73 (20%)
Query: 15 DKYYIFSKGNYKVGRK-GCDIIINKDKGVSRVHAEILVDEMISLNPFQDKSSKVSTTRVR 73
+ + + K + +GR+ GCD+ +K VS H I+VDE KS +V+
Sbjct: 28 EPHVLLRKREWTIGRRRGCDLSFPSNKLVSGDHCRIVVDE---------KSGQVT----- 73
Query: 74 IKDCSKYGTFINK 86
++D S GT INK
Sbjct: 74 LEDTSTSGTVINK 86
>sp|Q8DJB2|MIAB_THEEB (Dimethylallyl)adenosine tRNA methylthiotransferase MiaB
OS=Thermosynechococcus elongatus (strain BP-1) GN=miaB
PE=3 SV=1
Length = 450
Score = 34.3 bits (77), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 29/101 (28%), Positives = 45/101 (44%), Gaps = 7/101 (6%)
Query: 309 DLICAVLSGHLDPSVLISPSPPVLISSSCSTDETVVADSDAETEEETSPGHATAAVDNEE 368
DL+ AV L+ + SP P ++ +T E V ++ E + H A + +
Sbjct: 325 DLVAAVGFDQLN-TAAYSPRP----NTPAATWENQVPEAIKEDRLQRL-NHLVAKIAGDR 378
Query: 369 APTYLSKEEISINHAVNRSDNQHETGLRDGNSSIAYRSADI 409
+ YL +EE+ + VN D Q G DGN + Y DI
Sbjct: 379 SQRYLGREEVVLVEGVNPKDAQQVYGRTDGN-RLTYLPGDI 418
>sp|Q8IIS5|PESC_PLAF7 Pescadillo homolog OS=Plasmodium falciparum (isolate 3D7)
GN=PF11_0090 PE=3 SV=1
Length = 643
Score = 33.5 bits (75), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 15/50 (30%), Positives = 28/50 (56%)
Query: 337 CSTDETVVADSDAETEEETSPGHATAAVDNEEAPTYLSKEEISINHAVNR 386
C ++ ++ SD TE+E P H + +++E + KEE +IN +N+
Sbjct: 460 CLNEKNILPCSDYLTEKENLPVHLSPFIEDENFKNLVKKEEYTINKMLNQ 509
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.314 0.130 0.373
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 214,832,187
Number of Sequences: 539616
Number of extensions: 9027315
Number of successful extensions: 19503
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 52
Number of HSP's that attempted gapping in prelim test: 19283
Number of HSP's gapped (non-prelim): 178
length of query: 589
length of database: 191,569,459
effective HSP length: 123
effective length of query: 466
effective length of database: 125,196,691
effective search space: 58341658006
effective search space used: 58341658006
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 64 (29.3 bits)