Query 007803
Match_columns 589
No_of_seqs 268 out of 917
Neff 5.2
Searched_HMMs 46136
Date Thu Mar 28 15:33:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007803.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/007803hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF00498 FHA: FHA domain; Int 99.5 2.8E-14 6E-19 116.0 8.4 66 25-113 1-68 (68)
2 cd00060 FHA Forkhead associate 99.4 3E-12 6.5E-17 109.8 11.1 96 2-121 1-100 (102)
3 PLN02927 antheraxanthin epoxid 99.4 1.6E-12 3.4E-17 148.2 11.4 102 3-123 534-646 (668)
4 TIGR03354 VI_FHA type VI secre 99.1 1.8E-10 3.9E-15 124.6 10.0 83 12-116 13-98 (396)
5 KOG1882 Transcriptional regula 99.1 1.8E-10 4E-15 115.1 7.1 103 3-116 174-279 (293)
6 COG1716 FOG: FHA domain [Signa 99.0 9.7E-10 2.1E-14 105.7 8.4 70 22-117 88-159 (191)
7 smart00240 FHA Forkhead associ 98.7 2.7E-08 5.9E-13 76.3 5.1 46 25-86 1-49 (52)
8 COG3456 Predicted component of 98.6 2.4E-08 5.2E-13 107.1 5.4 82 12-115 15-98 (430)
9 KOG1881 Anion exchanger adapto 98.5 6.5E-08 1.4E-12 109.0 3.4 93 16-121 170-264 (793)
10 KOG2043 Signaling protein SWIF 98.3 1.5E-06 3.2E-11 102.2 7.9 123 137-265 671-798 (896)
11 PF12738 PTCB-BRCT: twin BRCT 98.2 3.5E-06 7.7E-11 67.8 5.9 60 127-188 2-63 (63)
12 PF00533 BRCT: BRCA1 C Terminu 98.1 1.3E-05 2.8E-10 65.5 7.5 56 137-192 22-77 (78)
13 KOG1880 Nuclear inhibitor of p 98.1 1.5E-06 3.3E-11 89.8 1.9 85 16-122 31-118 (337)
14 KOG4362 Transcriptional regula 98.0 1.9E-05 4.1E-10 89.9 10.0 139 124-267 477-625 (684)
15 cd00027 BRCT Breast Cancer Sup 97.8 0.0001 2.2E-09 57.7 7.5 57 136-193 15-71 (72)
16 PF08599 Nbs1_C: DNA damage re 97.6 7.2E-05 1.6E-09 60.9 3.9 55 511-569 3-64 (65)
17 smart00292 BRCT breast cancer 97.5 0.00041 8.8E-09 55.5 7.9 57 137-194 20-78 (80)
18 KOG0615 Serine/threonine prote 97.5 0.00011 2.4E-09 79.6 5.2 86 21-115 62-148 (475)
19 KOG3226 DNA repair protein [Re 97.0 0.00082 1.8E-08 71.7 5.4 69 124-194 319-389 (508)
20 KOG0245 Kinesin-like protein [ 95.5 0.031 6.8E-07 66.4 7.3 86 13-123 467-556 (1221)
21 TIGR02500 type_III_yscD type I 94.9 0.071 1.5E-06 58.5 7.8 65 3-86 1-67 (410)
22 KOG3524 Predicted guanine nucl 92.7 0.12 2.5E-06 59.6 4.2 141 105-262 101-242 (850)
23 KOG2293 Daxx-interacting prote 91.8 0.29 6.3E-06 54.9 6.0 77 16-114 441-524 (547)
24 PRK06195 DNA polymerase III su 89.8 3.1 6.7E-05 44.0 11.3 156 137-314 128-306 (309)
25 KOG3548 DNA damage checkpoint 89.6 2.4 5.3E-05 50.7 10.9 150 161-317 991-1155(1176)
26 PLN03123 poly [ADP-ribose] pol 87.1 1.2 2.5E-05 54.3 6.6 60 137-196 410-470 (981)
27 PLN03122 Poly [ADP-ribose] pol 85.6 2 4.3E-05 51.4 7.4 58 136-195 205-266 (815)
28 TIGR01663 PNK-3'Pase polynucle 85.5 2.3 5E-05 48.5 7.6 87 15-124 24-110 (526)
29 KOG1892 Actin filament-binding 84.9 1.6 3.4E-05 52.3 6.0 83 12-121 367-453 (1629)
30 PF00533 BRCT: BRCA1 C Terminu 83.2 1.6 3.4E-05 35.2 3.8 35 226-261 2-36 (78)
31 smart00292 BRCT breast cancer 80.7 15 0.00032 28.7 8.5 76 228-314 1-77 (80)
32 PRK06063 DNA polymerase III su 78.2 7.8 0.00017 41.3 7.9 70 123-192 234-304 (313)
33 KOG1929 Nucleotide excision re 76.3 8.7 0.00019 46.0 8.3 177 137-343 26-203 (811)
34 PRK06063 DNA polymerase III su 75.4 9.2 0.0002 40.8 7.5 74 227-314 230-305 (313)
35 PRK14351 ligA NAD-dependent DN 71.0 13 0.00028 44.0 8.0 76 227-315 607-683 (689)
36 PRK14350 ligA NAD-dependent DN 71.0 11 0.00025 44.3 7.5 73 227-312 591-663 (669)
37 COG0272 Lig NAD-dependent DNA 67.8 17 0.00036 42.7 7.8 73 228-313 593-665 (667)
38 PRK06195 DNA polymerase III su 65.2 19 0.00041 38.1 7.2 66 127-192 226-306 (309)
39 PRK07956 ligA NAD-dependent DN 63.7 20 0.00043 42.2 7.6 74 228-314 589-662 (665)
40 PRK14350 ligA NAD-dependent DN 62.7 18 0.00039 42.7 7.0 66 126-193 598-665 (669)
41 COG5275 BRCT domain type II [G 58.8 40 0.00087 34.7 7.7 81 223-316 150-231 (276)
42 COG0272 Lig NAD-dependent DNA 55.4 31 0.00067 40.6 7.1 65 126-192 599-665 (667)
43 PRK14351 ligA NAD-dependent DN 51.8 41 0.00089 39.9 7.5 64 127-192 615-681 (689)
44 PRK07956 ligA NAD-dependent DN 51.0 43 0.00093 39.6 7.5 64 127-192 596-661 (665)
45 TIGR00575 dnlj DNA ligase, NAD 49.5 32 0.0007 40.5 6.2 70 227-310 582-652 (652)
46 KOG0241 Kinesin-like protein [ 48.8 32 0.00069 42.0 5.9 73 25-123 469-542 (1714)
47 KOG0966 ATP-dependent DNA liga 44.6 43 0.00093 40.1 6.1 58 137-194 652-709 (881)
48 cd00027 BRCT Breast Cancer Sup 42.9 1.4E+02 0.0031 22.3 7.6 31 232-262 1-31 (72)
49 TIGR00575 dnlj DNA ligase, NAD 41.1 49 0.0011 39.0 6.0 59 127-187 590-650 (652)
50 KOG1929 Nucleotide excision re 39.8 43 0.00093 40.4 5.3 69 123-192 104-174 (811)
51 KOG2481 Protein required for n 38.3 20 0.00042 40.9 2.1 36 223-261 321-356 (570)
52 cd01764 Urm1 Urm1-like ubuitin 34.7 31 0.00067 30.5 2.4 27 82-113 62-88 (94)
53 COG5163 NOP7 Protein required 29.7 38 0.00083 37.6 2.5 37 222-261 343-379 (591)
54 PLN03122 Poly [ADP-ribose] pol 26.1 2.1E+02 0.0045 34.9 7.9 77 227-317 187-267 (815)
55 PRK01777 hypothetical protein; 25.4 58 0.0013 29.0 2.5 29 76-113 46-74 (95)
No 1
>PF00498 FHA: FHA domain; InterPro: IPR000253 The forkhead-associated (FHA) domain [] is a phosphopeptide recognition domain found in many regulatory proteins. It displays specificity for phosphothreonine-containing epitopes but will also recognise phosphotyrosine with relatively high affinity. It spans approximately 80-100 amino acid residues folded into an 11-stranded beta sandwich, which sometimes contain small helical insertions between the loops connecting the strands []. To date, genes encoding FHA-containing proteins have been identified in eubacterial and eukaryotic but not archaeal genomes. The domain is present in a diverse range of proteins, such as kinases, phosphatases, kinesins, transcription factors, RNA-binding proteins and metabolic enzymes which partake in many different cellular processes - DNA repair, signal transduction, vesicular transport and protein degradation are just a few examples.; GO: 0005515 protein binding; PDB: 1LGQ_B 1LGP_A 2CSW_A 2PIE_A 3FM8_A 3MDB_B 3GQS_B 1UHT_A 1WLN_A 3POA_A ....
Probab=99.53 E-value=2.8e-14 Score=115.98 Aligned_cols=66 Identities=41% Similarity=0.764 Sum_probs=57.8
Q ss_pred EEEccCC-CCeeecCCCcccccceEEEEeecccCCcccCCCCCcccccEEEEEC-CccceEEeCcCCCceeeeccCCceE
Q 007803 25 YKVGRKG-CDIIINKDKGVSRVHAEILVDEMISLNPFQDKSSKVSTTRVRIKDC-SKYGTFINKNLGSKEKVHEFPNKEA 102 (589)
Q Consensus 25 YtIGRk~-cdIvI~~D~sISR~HA~I~v~~~~~~~~~~~~~~~~~~~~v~I~Dl-SknGTfVNg~~~~~ekI~~~~g~~~ 102 (589)
|+|||.. |+|.| ++++|||.||.|.+... ..|+|+|+ |+||||||+ +++. ++.++
T Consensus 1 ~~iGR~~~~di~l-~~~~iSr~Ha~i~~~~~---------------~~~~i~d~~s~ngt~vng-----~~l~--~~~~~ 57 (68)
T PF00498_consen 1 VTIGRSPDCDIVL-PDPSISRRHARISFDDD---------------GQFYIEDLGSTNGTFVNG-----QRLG--PGEPV 57 (68)
T ss_dssp EEEESSTTSSEEE-TSTTSSTTSEEEEEETT---------------EEEEEEESSSSS-EEETT-----EEES--STSEE
T ss_pred CEEcCCCCCCEEE-CCHheeeeeeEEEEece---------------eeEEEEeCCCCCcEEECC-----EEcC--CCCEE
Confidence 7899997 99999 68999999999999863 26999999 999999999 7886 57899
Q ss_pred EccCCCeEEEc
Q 007803 103 TLKDGDLVSFG 113 (589)
Q Consensus 103 ~L~~GD~I~fG 113 (589)
.|++||+|+||
T Consensus 58 ~L~~gd~i~~G 68 (68)
T PF00498_consen 58 PLKDGDIIRFG 68 (68)
T ss_dssp EE-TTEEEEET
T ss_pred ECCCCCEEEcC
Confidence 99999999998
No 2
>cd00060 FHA Forkhead associated domain (FHA); found in eukaryotic and prokaryotic proteins. Putative nuclear signalling domain. FHA domains may bind phosphothreonine, phosphoserine and sometimes phosphotyrosine. In eukaryotes, many FHA domain-containing proteins localize to the nucleus, where they participate in establishing or maintaining cell cycle checkpoints, DNA repair, or transcriptional regulation. Members of the FHA family include: Dun1, Rad53, Cds1, Mek1, KAPP(kinase-associated protein phosphatase),and Ki-67 (a human nuclear protein related to cell proliferation).
Probab=99.39 E-value=3e-12 Score=109.82 Aligned_cols=96 Identities=34% Similarity=0.586 Sum_probs=75.5
Q ss_pred eeEEeeCCCCCCCCeEEEecC-CeEEEccCC-C-CeeecCCCcccccceEEEEeecccCCcccCCCCCcccccEEEEEC-
Q 007803 2 VWGLFPIDPLPGEDKYYIFSK-GNYKVGRKG-C-DIIINKDKGVSRVHAEILVDEMISLNPFQDKSSKVSTTRVRIKDC- 77 (589)
Q Consensus 2 MW~L~~~~~~~G~~~~~Ll~g-~~YtIGRk~-c-dIvI~~D~sISR~HA~I~v~~~~~~~~~~~~~~~~~~~~v~I~Dl- 77 (589)
||.|...... +..+.|.+.. ..|+|||.. | ++.| +++.|||.||+|.+... ..+++.|+
T Consensus 1 ~~~L~~~~~~-~~~~~~~l~~~~~~~iGr~~~~~~i~l-~~~~iS~~H~~i~~~~~---------------~~~~~~~~~ 63 (102)
T cd00060 1 VPRLVVLSGD-ASGRRYYLDPGGTYTIGRDSDNCDIVL-DDPSVSRRHAVIRYDGD---------------GGVVLIDLG 63 (102)
T ss_pred CeEEEEecCC-CceeEEEECCCCeEEECcCCCcCCEEc-CCCCeeCcceEEEEcCC---------------CCEEEEECC
Confidence 7888776532 3456666655 999999997 8 9999 69999999999999862 14677777
Q ss_pred CccceEEeCcCCCceeeeccCCceEEccCCCeEEEccCCcccce
Q 007803 78 SKYGTFINKNLGSKEKVHEFPNKEATLKDGDLVSFGTGNATYRF 121 (589)
Q Consensus 78 SknGTfVNg~~~~~ekI~~~~g~~~~L~~GD~I~fG~~~~~frl 121 (589)
|++|||||+ +++. .+.++.|.+||.|.||.....|++
T Consensus 64 s~~g~~vn~-----~~~~--~~~~~~l~~gd~i~ig~~~~~~~~ 100 (102)
T cd00060 64 STNGTFVNG-----QRVS--PGEPVRLRDGDVIRLGNTSISFRF 100 (102)
T ss_pred CCCCeEECC-----EECC--CCCcEECCCCCEEEECCeEEEEEE
Confidence 999999999 7775 357899999999999974444443
No 3
>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase
Probab=99.38 E-value=1.6e-12 Score=148.25 Aligned_cols=102 Identities=25% Similarity=0.425 Sum_probs=82.9
Q ss_pred eEEeeCCCCCCC-CeEEEe--cCCeEEEccCC-CCe-----eecCCCcccccceEEEEeecccCCcccCCCCCcccccEE
Q 007803 3 WGLFPIDPLPGE-DKYYIF--SKGNYKVGRKG-CDI-----IINKDKGVSRVHAEILVDEMISLNPFQDKSSKVSTTRVR 73 (589)
Q Consensus 3 W~L~~~~~~~G~-~~~~Ll--~g~~YtIGRk~-cdI-----vI~~D~sISR~HA~I~v~~~~~~~~~~~~~~~~~~~~v~ 73 (589)
|+|.|.++.... +.+.|. ....++|||.+ |++ +| +++.||+.||.|.+.+. .++
T Consensus 534 w~l~~~~~~~~~~~~~~l~~~~~~p~~iG~~~~~~~~~~~i~i-~~~~vS~~Ha~i~~~~~----------------~~~ 596 (668)
T PLN02927 534 WYLIPHGDDCCVSETLCLTKDEDQPCIVGSEPDQDFPGMRIVI-PSSQVSKMHARVIYKDG----------------AFF 596 (668)
T ss_pred eEEEecCCCCcccceeeeecCCCCCeEecCCCCcCCCCceEEe-cCCccChhHeEEEEECC----------------EEE
Confidence 999997643222 334443 56899999998 885 88 78999999999999873 699
Q ss_pred EEEC-CccceEEeCcCCCceeeeccCCceEEccCCCeEEEccCC-cccceec
Q 007803 74 IKDC-SKYGTFINKNLGSKEKVHEFPNKEATLKDGDLVSFGTGN-ATYRFCY 123 (589)
Q Consensus 74 I~Dl-SknGTfVNg~~~~~ekI~~~~g~~~~L~~GD~I~fG~~~-~~frl~~ 123 (589)
|+|| |+||||||++.+ +|+...||.++.|++||+|.||... ..||++.
T Consensus 597 ~~Dl~S~nGT~v~~~~~--~r~~~~p~~~~~l~~~d~I~~g~~~~~~fr~~~ 646 (668)
T PLN02927 597 LMDLRSEHGTYVTDNEG--RRYRATPNFPARFRSSDIIEFGSDKKAAFRVKV 646 (668)
T ss_pred EEECCCCCccEEeCCCC--ceEecCCCCceEeCCCCEEEeCCCcceeEEEEe
Confidence 9999 999999998543 4688788999999999999999865 5699886
No 4
>TIGR03354 VI_FHA type VI secretion system FHA domain protein. Members of this protein family are FHA (forkhead-associated) domain-containing proteins that are part of type VI secretion loci in a considerable number of bacteria, most of which are known pathogens. Species include Pseudomonas aeruginosa PAO1, Aeromonas hydrophila, Yersinia pestis, Burkholderia mallei, etc.
Probab=99.12 E-value=1.8e-10 Score=124.63 Aligned_cols=83 Identities=27% Similarity=0.413 Sum_probs=69.2
Q ss_pred CCCCeEEEecCCeEEEccCC-CCeeecCCCc--ccccceEEEEeecccCCcccCCCCCcccccEEEEECCccceEEeCcC
Q 007803 12 PGEDKYYIFSKGNYKVGRKG-CDIIINKDKG--VSRVHAEILVDEMISLNPFQDKSSKVSTTRVRIKDCSKYGTFINKNL 88 (589)
Q Consensus 12 ~G~~~~~Ll~g~~YtIGRk~-cdIvI~~D~s--ISR~HA~I~v~~~~~~~~~~~~~~~~~~~~v~I~DlSknGTfVNg~~ 88 (589)
.|-...+.+....++|||.. |+|+| .|+. |||.||+|.+... .|+|+|+|+||||||++
T Consensus 13 ~g~~~~~~f~~~~~~IGR~~~~d~~l-~d~~~~VS~~Ha~I~~~~g----------------~~~l~DlStNGT~VN~s- 74 (396)
T TIGR03354 13 PGIAAQKTFGTNGGTIGRSEDCDWVL-PDPERHVSGRHARIRYRDG----------------AYLLTDLSTNGVFLNGS- 74 (396)
T ss_pred CCcceEEEECCCCEEEecCCCCCEEe-CCCCCCcchhhcEEEEECC----------------EEEEEECCCCCeEECCC-
Confidence 45567888989999999987 99999 6777 9999999998752 59999999999999931
Q ss_pred CCceeeeccCCceEEccCCCeEEEccCC
Q 007803 89 GSKEKVHEFPNKEATLKDGDLVSFGTGN 116 (589)
Q Consensus 89 ~~~ekI~~~~g~~~~L~~GD~I~fG~~~ 116 (589)
..++. ++.++.|++||+|+||...
T Consensus 75 --g~~l~--~~~~~~L~~GD~I~iG~~~ 98 (396)
T TIGR03354 75 --GSPLG--RGNPVRLEQGDRLRLGDYE 98 (396)
T ss_pred --CCCCC--CCCceEcCCCCEEEECCEE
Confidence 05665 4668999999999999743
No 5
>KOG1882 consensus Transcriptional regulator SNIP1, contains FHA domain [Signal transduction mechanisms]
Probab=99.08 E-value=1.8e-10 Score=115.12 Aligned_cols=103 Identities=26% Similarity=0.373 Sum_probs=79.6
Q ss_pred eEEeeCCCCCCCCeEEEecCCeEEEccCC--CCeeecCCCcccccceEEEEeecccCCcccCCCCCcccccEEEEEC-Cc
Q 007803 3 WGLFPIDPLPGEDKYYIFSKGNYKVGRKG--CDIIINKDKGVSRVHAEILVDEMISLNPFQDKSSKVSTTRVRIKDC-SK 79 (589)
Q Consensus 3 W~L~~~~~~~G~~~~~Ll~g~~YtIGRk~--cdIvI~~D~sISR~HA~I~v~~~~~~~~~~~~~~~~~~~~v~I~Dl-Sk 79 (589)
|-|+++....-...+++.....|++||.- +||-| ++++.|.+||.|.+..+.-.-..+. .+.+-..+|.|| |.
T Consensus 174 wrLy~fk~~e~l~~l~iHrqs~yL~gRerkIaDi~i-dhpScSKQHaviQyR~v~~~r~dGt---~grrvkpYiiDLgS~ 249 (293)
T KOG1882|consen 174 WRLYPFKCYEVLPVLYIHRQSCYLDGRERKIADIPI-DHPSCSKQHAVIQYRLVEFTRADGT---VGRRVKPYIIDLGSG 249 (293)
T ss_pred eecccccCCcccchheeeeeeeeecCceeeeeccCC-CCccccccceeeeeeecccccCCCc---cceeeeeEEEecCCC
Confidence 99999864222267788888999999965 99999 8999999999999987642111111 123446799999 99
Q ss_pred cceEEeCcCCCceeeeccCCceEEccCCCeEEEccCC
Q 007803 80 YGTFINKNLGSKEKVHEFPNKEATLKDGDLVSFGTGN 116 (589)
Q Consensus 80 nGTfVNg~~~~~ekI~~~~g~~~~L~~GD~I~fG~~~ 116 (589)
||||+|. .+|. |...++|..+|+|+||-..
T Consensus 250 NgTfLNn-----k~Ie--pqRYyEL~ekDvlkfgfs~ 279 (293)
T KOG1882|consen 250 NGTFLNN-----KVIE--PQRYYELREKDVLKFGFSS 279 (293)
T ss_pred CcceecC-----cccC--chheeeeecCceeeeccch
Confidence 9999999 6776 5678899999999999543
No 6
>COG1716 FOG: FHA domain [Signal transduction mechanisms]
Probab=99.00 E-value=9.7e-10 Score=105.66 Aligned_cols=70 Identities=37% Similarity=0.548 Sum_probs=61.4
Q ss_pred CCeEEEccCC-CCeeecCCCcccccceEEEEeecccCCcccCCCCCcccccEEEEEC-CccceEEeCcCCCceeeeccCC
Q 007803 22 KGNYKVGRKG-CDIIINKDKGVSRVHAEILVDEMISLNPFQDKSSKVSTTRVRIKDC-SKYGTFINKNLGSKEKVHEFPN 99 (589)
Q Consensus 22 g~~YtIGRk~-cdIvI~~D~sISR~HA~I~v~~~~~~~~~~~~~~~~~~~~v~I~Dl-SknGTfVNg~~~~~ekI~~~~g 99 (589)
...|++||.. +++++ .|..|||+||.|.+... .++++|+ |+||||||+ +++.
T Consensus 88 ~~~~tigr~~~~~i~~-~~~~vSR~Ha~l~~~~~----------------~~~~~d~~S~nGt~vn~-----~~v~---- 141 (191)
T COG1716 88 EPVTTIGRDPDNDIVL-DDDVVSRRHAELRREGN----------------EVFLEDLGSTNGTYVNG-----EKVR---- 141 (191)
T ss_pred cceEEeccCCCCCEEc-CCCccccceEEEEEeCC----------------ceEEEECCCCcceEECC-----eEcc----
Confidence 3589999975 99999 78999999999999873 5788999 999999999 8885
Q ss_pred ceEEccCCCeEEEccCCc
Q 007803 100 KEATLKDGDLVSFGTGNA 117 (589)
Q Consensus 100 ~~~~L~~GD~I~fG~~~~ 117 (589)
..+.|++||.|.||....
T Consensus 142 ~~~~l~~gd~i~i~~~~~ 159 (191)
T COG1716 142 QRVLLQDGDVIRLGGTLA 159 (191)
T ss_pred CcEEcCCCCEEEECccce
Confidence 479999999999997543
No 7
>smart00240 FHA Forkhead associated domain. Found in eukaryotic and prokaryotic proteins. Putative nuclear signalling domain.
Probab=98.68 E-value=2.7e-08 Score=76.32 Aligned_cols=46 Identities=41% Similarity=0.638 Sum_probs=40.3
Q ss_pred EEEccCC--CCeeecCCCcccccceEEEEeecccCCcccCCCCCcccccEEEEEC-CccceEEeC
Q 007803 25 YKVGRKG--CDIIINKDKGVSRVHAEILVDEMISLNPFQDKSSKVSTTRVRIKDC-SKYGTFINK 86 (589)
Q Consensus 25 YtIGRk~--cdIvI~~D~sISR~HA~I~v~~~~~~~~~~~~~~~~~~~~v~I~Dl-SknGTfVNg 86 (589)
++|||.. |++++ +++.|||.||.|.++.. ..|+|+|+ |++|||||+
T Consensus 1 ~~iGr~~~~~~i~~-~~~~vs~~H~~i~~~~~---------------~~~~i~d~~s~~gt~vng 49 (52)
T smart00240 1 VTIGRSSEDCDIQL-PGPSISRRHAEIVYDGG---------------GRFYLIDLGSTNGTFVNG 49 (52)
T ss_pred CEeCCCCCCCCEEe-CCCCcchhHcEEEECCC---------------CeEEEEECCCCCCeeECC
Confidence 4799976 99999 78899999999999763 15899999 799999999
No 8
>COG3456 Predicted component of the type VI protein secretion system, contains a FHA domain [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]
Probab=98.65 E-value=2.4e-08 Score=107.11 Aligned_cols=82 Identities=26% Similarity=0.380 Sum_probs=69.6
Q ss_pred CCCCeEEEecCCeEEEccCC-CCeeec-CCCcccccceEEEEeecccCCcccCCCCCcccccEEEEECCccceEEeCcCC
Q 007803 12 PGEDKYYIFSKGNYKVGRKG-CDIIIN-KDKGVSRVHAEILVDEMISLNPFQDKSSKVSTTRVRIKDCSKYGTFINKNLG 89 (589)
Q Consensus 12 ~G~~~~~Ll~g~~YtIGRk~-cdIvI~-~D~sISR~HA~I~v~~~~~~~~~~~~~~~~~~~~v~I~DlSknGTfVNg~~~ 89 (589)
+|...-|++..+...|||.. |||.|+ .+..||+.||+|..... .|+|+|.|.+|||||+
T Consensus 15 sG~~aq~~f~~~~g~IGrs~dcdW~i~D~~~~VS~~Hc~I~~~dg----------------~f~L~DtS~g~l~VNg--- 75 (430)
T COG3456 15 SGKAAQKLFDRGGGVIGRSPDCDWQIDDPERFVSKQHCTISYRDG----------------GFCLTDTSNGGLLVNG--- 75 (430)
T ss_pred CchhhhhhhhcCCcccccCCCCCccccCcccccchhheEEEecCC----------------eEEEEecCCCceeecc---
Confidence 56677888888999999986 999997 67899999999999873 6999999999999999
Q ss_pred CceeeeccCCceEEccCCCeEEEccC
Q 007803 90 SKEKVHEFPNKEATLKDGDLVSFGTG 115 (589)
Q Consensus 90 ~~ekI~~~~g~~~~L~~GD~I~fG~~ 115 (589)
..+.+..+ ...|+.||+|.+|.+
T Consensus 76 --s~~~~g~~-~~RLqqGd~i~iG~y 98 (430)
T COG3456 76 --SDLPLGEG-SARLQQGDEILIGRY 98 (430)
T ss_pred --cccCCCCC-ccccccCCEEeeccE
Confidence 45554223 499999999999965
No 9
>KOG1881 consensus Anion exchanger adaptor protein Kanadaptin, contains FHA domain [General function prediction only]
Probab=98.49 E-value=6.5e-08 Score=109.00 Aligned_cols=93 Identities=27% Similarity=0.399 Sum_probs=71.6
Q ss_pred eEEEecCCeEEEccCC-CCeeecCCCcccccceEEEEeecccCCcccCCCCCcccccEEEEEC-CccceEEeCcCCCcee
Q 007803 16 KYYIFSKGNYKVGRKG-CDIIINKDKGVSRVHAEILVDEMISLNPFQDKSSKVSTTRVRIKDC-SKYGTFINKNLGSKEK 93 (589)
Q Consensus 16 ~~~Ll~g~~YtIGRk~-cdIvI~~D~sISR~HA~I~v~~~~~~~~~~~~~~~~~~~~v~I~Dl-SknGTfVNg~~~~~ek 93 (589)
.+-|-....|+|||.. ||+.+ .|++|||.||.|.+....+.++ | ......|+|.|+ |++|||+|. .|
T Consensus 170 t~~l~~~~~~~fgr~~~cD~~~-eHpsISr~h~vlQy~~~~~~~p----~-~s~~~g~~i~dlgsThgt~~NK-----~r 238 (793)
T KOG1881|consen 170 TEDLKGAAACLFGRLGGCDVAL-EHPSISRFHAVLQYKASGPDDP----C-ASNGEGWYIYDLGSTHGTFLNK-----DR 238 (793)
T ss_pred eeecccceeEEecccCCCcccc-ccCcccccceeeeccCCCCCcc----c-cCCCCceEEeeccccccceecc-----cc
Confidence 3344455789999997 99999 8999999999999987533211 1 112346999999 999999999 77
Q ss_pred eeccCCceEEccCCCeEEEccCCcccce
Q 007803 94 VHEFPNKEATLKDGDLVSFGTGNATYRF 121 (589)
Q Consensus 94 I~~~~g~~~~L~~GD~I~fG~~~~~frl 121 (589)
+. +.....++.|++++||.+...|.+
T Consensus 239 vp--pk~yir~~Vg~v~~fggsTrl~i~ 264 (793)
T KOG1881|consen 239 VP--PKVYIRDRVGHVARFGGSTRLYIF 264 (793)
T ss_pred CC--CcchhhhhHHHHHHhcCceEEEEe
Confidence 76 567778899999999976654444
No 10
>KOG2043 consensus Signaling protein SWIFT and related BRCT domain proteins [Transcription; Signal transduction mechanisms; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=98.27 E-value=1.5e-06 Score=102.19 Aligned_cols=123 Identities=19% Similarity=0.201 Sum_probs=96.5
Q ss_pred hhHHHHHHhcCCeecccccccceEEEEeccccchhhHHHHHHcCCceechhHHHHHHhccCCCCCCCCCCCCCCCcc-C-
Q 007803 137 APLQEKVSSIGAFITSKFCQECTHILVQHHMRVKGELLDAIVAKKPLVDVSWLEVVAEKSIRTDFPGCNSHVTTLIM-E- 214 (589)
Q Consensus 137 ~~L~~~l~~LGg~vv~~ws~~cTHLV~~~s~r~T~KlL~ALi~gkpIVtp~wl~aLa~~~~~~elPd~~dflPpl~i-e- 214 (589)
..+...+..+||.+..++. +|||+|. ..+++|.|+|+|+.+|+|||++.||..+...+. |++...|+-.... +
T Consensus 671 ~~~k~~~k~lg~s~~ss~~-e~Th~i~-~rirRT~k~Leai~~G~~ivT~~wL~s~~k~g~---~~dek~yil~D~ekEk 745 (896)
T KOG2043|consen 671 KNYKLAKKFLGGSVASSDS-EATHFIA-DRIRRTLKFLEAISSGKPLVTPQWLVSSLKSGE---KLDEKPYILHDEEKEK 745 (896)
T ss_pred hhhhhHHhhccceeecccc-cceeeee-hhhhccHHHHhhhccCCcccchHHHHHHhhccc---cccCccccccCHHHHh
Confidence 5577888899999998876 9999999 599999999999999999999999998876543 7788888766532 1
Q ss_pred CCCcccc---CCcCcccCcCCcEEEEcCCCcccchhhHHHHHHHcCceEEEeee
Q 007803 215 GDPVELA---NVDTLENCMRGYTFLLDSSMKYKYGDQLQSLLEVSGAKTLSIES 265 (589)
Q Consensus 215 ~~~~~l~---p~~~R~~LF~G~TFIf~~~~qy~~~~~L~~lIe~aGGkvll~e~ 265 (589)
...+.+. -++.-..+|.|+.++.++.+.... ..+-+||+.+||.++..-.
T Consensus 746 ~~gf~l~ssl~RAr~~plL~g~~v~vtp~v~p~~-~~v~eiie~~ggnvv~~~p 798 (896)
T KOG2043|consen 746 EFGFRLKSSLLRARADPLLEGINVHVTPSVTPSP-KTVVEIIEISGGNVVSDSP 798 (896)
T ss_pred ccCcchhhHHHHhhcchhhcCceEEeccccccCc-chhHHHHhhcCcceecccC
Confidence 1122221 133334999999999999888664 6899999999999886544
No 11
>PF12738 PTCB-BRCT: twin BRCT domain; PDB: 3PA6_A 3KTF_C 2WT8_C 3EF1_A 3EF0_A.
Probab=98.18 E-value=3.5e-06 Score=67.78 Aligned_cols=60 Identities=15% Similarity=0.316 Sum_probs=48.4
Q ss_pred EEeecCccc--chhHHHHHHhcCCeecccccccceEEEEeccccchhhHHHHHHcCCceechhH
Q 007803 127 ILFVDSFQV--NAPLQEKVSSIGAFITSKFCQECTHILVQHHMRVKGELLDAIVAKKPLVDVSW 188 (589)
Q Consensus 127 Vl~~Ssl~~--~~~L~~~l~~LGg~vv~~ws~~cTHLV~~~s~r~T~KlL~ALi~gkpIVtp~w 188 (589)
++|++.... ...|+..+..+||.+..++...|||||+ ....+.|.-.|.-.|.|||+++|
T Consensus 2 ~i~~sg~~~~~~~~l~~~i~~~Gg~~~~~lt~~~THLI~--~~~~~~K~~~A~~~gi~vV~~~W 63 (63)
T PF12738_consen 2 VICFSGFSGKERSQLRKLIEALGGKYSKDLTKKTTHLIC--SSPEGKKYRKAKEWGIPVVSPDW 63 (63)
T ss_dssp EEEEEEB-TTTCCHHHHHHHCTT-EEESSSSTT-SEEEE--ES--HHHHHHHHHCTSEEEEHHH
T ss_pred EEEECCCCHHHHHHHHHHHHHCCCEEeccccCCceEEEE--eCCCcHHHHHHHHCCCcEECCCC
Confidence 455554322 4889999999999999999999999999 68899999999999999999999
No 12
>PF00533 BRCT: BRCA1 C Terminus (BRCT) domain; InterPro: IPR001357 The BRCT domain (after the C_terminal domain of a breast cancer susceptibility protein) is found predominantly in proteins involved in cell cycle checkpoint functions responsive to DNA damage [], for example as found in the breast cancer DNA-repair protein BRCA1. The domain is an approximately 100 amino acid tandem repeat, which appears to act as a phospho-protein binding domain []. A chitin biosynthesis protein from yeast also seems to belong to this group. ; GO: 0005622 intracellular; PDB: 3L46_A 3AL3_A 3AL2_A 1WF6_A 3II6_X 2NTE_B 3FA2_A 2R1Z_A 2COK_A 2K7F_A ....
Probab=98.08 E-value=1.3e-05 Score=65.51 Aligned_cols=56 Identities=21% Similarity=0.433 Sum_probs=50.8
Q ss_pred hhHHHHHHhcCCeecccccccceEEEEeccccchhhHHHHHHcCCceechhHHHHH
Q 007803 137 APLQEKVSSIGAFITSKFCQECTHILVQHHMRVKGELLDAIVAKKPLVDVSWLEVV 192 (589)
Q Consensus 137 ~~L~~~l~~LGg~vv~~ws~~cTHLV~~~s~r~T~KlL~ALi~gkpIVtp~wl~aL 192 (589)
..|...+.++||.+...+...|||+|+......+.|...|...+.|||+++|+.++
T Consensus 22 ~~l~~~i~~~GG~v~~~~~~~~thvI~~~~~~~~~k~~~~~~~~i~iV~~~Wi~~c 77 (78)
T PF00533_consen 22 EELEQLIKKHGGTVSNSFSKKTTHVIVGNPNKRTKKYKAAIANGIPIVSPDWIEDC 77 (78)
T ss_dssp HHHHHHHHHTTEEEESSSSTTSSEEEESSSHCCCHHHHHHHHTTSEEEETHHHHHH
T ss_pred HHHHHHHHHcCCEEEeecccCcEEEEeCCCCCccHHHHHHHHCCCeEecHHHHHHh
Confidence 88899999999999999999999999943337999999999999999999999875
No 13
>KOG1880 consensus Nuclear inhibitor of phosphatase-1 [General function prediction only]
Probab=98.06 E-value=1.5e-06 Score=89.81 Aligned_cols=85 Identities=33% Similarity=0.568 Sum_probs=71.1
Q ss_pred eEEEecCCeEEEccCC--CCeeecCCCcccccceEEEEeecccCCcccCCCCCcccccEEEEEC-CccceEEeCcCCCce
Q 007803 16 KYYIFSKGNYKVGRKG--CDIIINKDKGVSRVHAEILVDEMISLNPFQDKSSKVSTTRVRIKDC-SKYGTFINKNLGSKE 92 (589)
Q Consensus 16 ~~~Ll~g~~YtIGRk~--cdIvI~~D~sISR~HA~I~v~~~~~~~~~~~~~~~~~~~~v~I~Dl-SknGTfVNg~~~~~e 92 (589)
...+.....|++||.. ||.+| ++.++||.||-+.+... -..++|.|+ |.+|||+.. .
T Consensus 31 kl~iddkr~y~Fgrn~q~~df~i-dh~scSrvhaa~vyhkh--------------l~~~~lidl~s~hgtf~g~-----~ 90 (337)
T KOG1880|consen 31 KLIIDDKRRYLFGRNHQTCDFVI-DHASCSRVHAALVYHKH--------------LSRIFLIDLGSTHGTFLGN-----E 90 (337)
T ss_pred HHHhhhhhhhhhccCCCccceEe-ecchhhhhHhhhhhhhc--------------cceEEEEEccCCcceeeee-----e
Confidence 4455567899999986 99999 89999999999988753 126899999 999999988 6
Q ss_pred eeeccCCceEEccCCCeEEEccCCccccee
Q 007803 93 KVHEFPNKEATLKDGDLVSFGTGNATYRFC 122 (589)
Q Consensus 93 kI~~~~g~~~~L~~GD~I~fG~~~~~frl~ 122 (589)
|+. +..++.|+.|-.++||.+..+|-++
T Consensus 91 rL~--~~~p~~l~i~~~~~fgasTr~y~lr 118 (337)
T KOG1880|consen 91 RLE--PHKPVQLEIGSTFHFGASTRIYLLR 118 (337)
T ss_pred eec--cCCCccccCCceEEEeccceeeeee
Confidence 776 5789999999999999887665544
No 14
>KOG4362 consensus Transcriptional regulator BRCA1 [Replication, recombination and repair; Transcription]
Probab=98.03 E-value=1.9e-05 Score=89.91 Aligned_cols=139 Identities=17% Similarity=0.240 Sum_probs=97.4
Q ss_pred CCeEEeecCcccc-hhHHHHHHhcCCeecccccccceEEEEe----ccccchhhHHHHHHcCCceechhHHHHHHhccCC
Q 007803 124 APLILFVDSFQVN-APLQEKVSSIGAFITSKFCQECTHILVQ----HHMRVKGELLDAIVAKKPLVDVSWLEVVAEKSIR 198 (589)
Q Consensus 124 ~PlVl~~Ssl~~~-~~L~~~l~~LGg~vv~~ws~~cTHLV~~----~s~r~T~KlL~ALi~gkpIVtp~wl~aLa~~~~~ 198 (589)
.+++.+.+.+... ..+-+.+.-. .+...|.+..||++++ ..+.+|.|++++++.||+|++.+|+.++....
T Consensus 477 kk~~~~~s~l~p~ek~~v~~~a~~--t~~k~~~~~~thvi~~~~~~g~c~rTlk~~~gil~gkwi~~~~w~~~s~k~~-- 552 (684)
T KOG4362|consen 477 KKLVLLVSGLTPSEKQLVEKFAVD--TISKFWIEPVTHVIASTDLEGACLRTLKVLMGILRGKWILSYDWVLASLKLR-- 552 (684)
T ss_pred cceeeeeccCCcchHHHHHHHHHH--HHhhccCCCceeeeeecccccchhhhHHHHHHhhcCceeeeHHHHHHHHHhc--
Confidence 4566666655442 2333333322 6667899999999995 36899999999999999999999998875432
Q ss_pred CCCCCCCCCCCCCcc----CCCCc-cccCCcCcccCcCCcEEEEcCCCcccchhhHHHHHHHcCceEEEeeecC
Q 007803 199 TDFPGCNSHVTTLIM----EGDPV-ELANVDTLENCMRGYTFLLDSSMKYKYGDQLQSLLEVSGAKTLSIESFC 267 (589)
Q Consensus 199 ~elPd~~dflPpl~i----e~~~~-~l~p~~~R~~LF~G~TFIf~~~~qy~~~~~L~~lIe~aGGkvll~e~~~ 267 (589)
.|-+++.|--.+.. ++... .+..-..+.+||+|+-|+|+...--.+.+.|+.++.++||.++.....+
T Consensus 553 -~~~~eepfEl~~d~~~~~~~~~~~~~~a~s~~~kLf~gl~~~~~g~fs~~p~~~l~~l~~~~gg~~l~~~~~~ 625 (684)
T KOG4362|consen 553 -KWVSEEPFELQIDVPGAREGPKEKRLRAESYKPKLFEGLKFYFVGDFSNPPKEQLQELVHLAGGTILQVPRVA 625 (684)
T ss_pred -CCCCCCCeeEeecccCcccCcccccccccccCcchhcCCcceeecccccCcHHHHHHHHhhcCcceeeccCcc
Confidence 23445555433321 11111 1222345689999999999998887778999999999999999876633
No 15
>cd00027 BRCT Breast Cancer Suppressor Protein (BRCA1), carboxy-terminal domain. The BRCT domain is found within many DNA damage repair and cell cycle checkpoint proteins. The unique diversity of this domain superfamily allows BRCT modules to interact forming homo/hetero BRCT multimers, BRCT-non-BRCT interactions, and interactions within DNA strand breaks.
Probab=97.79 E-value=0.0001 Score=57.67 Aligned_cols=57 Identities=28% Similarity=0.401 Sum_probs=48.1
Q ss_pred chhHHHHHHhcCCeecccccccceEEEEeccccchhhHHHHHHcCCceechhHHHHHH
Q 007803 136 NAPLQEKVSSIGAFITSKFCQECTHILVQHHMRVKGELLDAIVAKKPLVDVSWLEVVA 193 (589)
Q Consensus 136 ~~~L~~~l~~LGg~vv~~ws~~cTHLV~~~s~r~T~KlL~ALi~gkpIVtp~wl~aLa 193 (589)
...|.+.+..+||.+...+...+||+|+. ......+...|...+.|||+++|+.++.
T Consensus 15 ~~~l~~~i~~~Gg~v~~~~~~~~thvI~~-~~~~~~~~~~~~~~~~~iV~~~Wi~~~~ 71 (72)
T cd00027 15 RDELKELIEKLGGKVTSSVSKKTTHVIVG-SDAGPKKLLKAIKLGIPIVTPEWLLDCL 71 (72)
T ss_pred HHHHHHHHHHcCCEEeccccCCceEEEEC-CCCCchHHHHHHHcCCeEecHHHHHHHh
Confidence 38899999999999999999999999994 4444444888999999999999997763
No 16
>PF08599 Nbs1_C: DNA damage repair protein Nbs1; InterPro: IPR013908 This C-terminal region of the DNA damage repair protein Nbs1 has been identified to be necessary for the binding of Mre11 and Tel1 [].
Probab=97.58 E-value=7.2e-05 Score=60.87 Aligned_cols=55 Identities=35% Similarity=0.568 Sum_probs=39.4
Q ss_pred ccccccccccccCC-cc------cccccCCCCCCcCCCCCchHHHHHHHHHHHHHHHHHHHHHHhh
Q 007803 511 NFKRFRKTNIQSGN-SF------SSLIPFSKYPYKDSDNGTEEMAVSMKEEKKRKQMEALAEDMFN 569 (589)
Q Consensus 511 ~fk~f~k~~~~~gn-sf------~~~~pf~~~~y~~~~~~~~~~~~~~~~e~~r~~~e~~a~~~f~ 569 (589)
|||+|||... ||- ++ +.||.+ .+=|.|+.+ +=+.+.|.+++++.+.|.+|||||-
T Consensus 3 NFKkFkKv~~-pGa~~lP~IIGGSDLi~h--~~~knsele-eWl~~e~E~~~q~~reEslaDDLFr 64 (65)
T PF08599_consen 3 NFKKFKKVAY-PGAGGLPHIIGGSDLIAH--HAGKNSELE-EWLRQEMEEQRQQAREESLADDLFR 64 (65)
T ss_pred chhhhccccc-CCCCCCCeeecchhhhhc--cccccccHH-HHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 9999999754 332 11 234433 445666665 4477888999999999999999994
No 17
>smart00292 BRCT breast cancer carboxy-terminal domain.
Probab=97.54 E-value=0.00041 Score=55.46 Aligned_cols=57 Identities=30% Similarity=0.413 Sum_probs=47.6
Q ss_pred hhHHHHHHhcCCeecccccc-cceEEEEeccccchh-hHHHHHHcCCceechhHHHHHHh
Q 007803 137 APLQEKVSSIGAFITSKFCQ-ECTHILVQHHMRVKG-ELLDAIVAKKPLVDVSWLEVVAE 194 (589)
Q Consensus 137 ~~L~~~l~~LGg~vv~~ws~-~cTHLV~~~s~r~T~-KlL~ALi~gkpIVtp~wl~aLa~ 194 (589)
..|.+.+...||.++..+.. .+||+|+. ...... +...|...+.|||+++|+.++..
T Consensus 20 ~~l~~~i~~~Gg~~~~~~~~~~~thvi~~-~~~~~~~~~~~~~~~~~~iV~~~Wi~~~~~ 78 (80)
T smart00292 20 DELKELIEALGGKVTSSLSSKTTTHVIVG-SPEGGKLELLLAIALGIPIVTEDWLLDCLK 78 (80)
T ss_pred HHHHHHHHHcCCEEecccCccceeEEEEc-CCCCccHHHHHHHHcCCCCccHHHHHHHHH
Confidence 88899999999999999988 89999994 333332 36888899999999999988754
No 18
>KOG0615 consensus Serine/threonine protein kinase Chk2 and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=97.50 E-value=0.00011 Score=79.58 Aligned_cols=86 Identities=30% Similarity=0.457 Sum_probs=63.6
Q ss_pred cCCeEEEccCC-CCeeecCCCcccccceEEEEeecccCCcccCCCCCcccccEEEEECCccceEEeCcCCCceeeeccCC
Q 007803 21 SKGNYKVGRKG-CDIIINKDKGVSRVHAEILVDEMISLNPFQDKSSKVSTTRVRIKDCSKYGTFINKNLGSKEKVHEFPN 99 (589)
Q Consensus 21 ~g~~YtIGRk~-cdIvI~~D~sISR~HA~I~v~~~~~~~~~~~~~~~~~~~~v~I~DlSknGTfVNg~~~~~ekI~~~~g 99 (589)
.+..|++||.+ ||..+ ....+|.+|-.|.......---..++. .+....++++|.|+||||||. +++. .|
T Consensus 62 ~nd~f~fGR~~~~d~~l-n~~~~s~~~~~i~~~~~~~~~~f~~dr-~~~sn~~y~~DhS~nGT~VN~-----e~i~--k~ 132 (475)
T KOG0615|consen 62 ANDEFTFGRGDSCDAPL-NLNNVSNKHFKILLYNKISKIHFRIDR-DKNSNRVYLHDHSRNGTFVND-----EMIG--KG 132 (475)
T ss_pred ccceEEecCCCcccccc-cCccccccchheeeeeeeeeeeecccC-CCccceEEEEecccCcccccH-----hHhh--cc
Confidence 46899999996 99999 677799999998876211111001111 123347999999999999999 6665 47
Q ss_pred ceEEccCCCeEEEccC
Q 007803 100 KEATLKDGDLVSFGTG 115 (589)
Q Consensus 100 ~~~~L~~GD~I~fG~~ 115 (589)
....|++||+|.+|..
T Consensus 133 ~~r~lkN~dei~is~p 148 (475)
T KOG0615|consen 133 LSRILKNGDEISISIP 148 (475)
T ss_pred ccccccCCCEEEeccc
Confidence 8999999999999964
No 19
>KOG3226 consensus DNA repair protein [Replication, recombination and repair]
Probab=97.03 E-value=0.00082 Score=71.73 Aligned_cols=69 Identities=14% Similarity=0.262 Sum_probs=60.8
Q ss_pred CCeEEeecCcccc--hhHHHHHHhcCCeecccccccceEEEEeccccchhhHHHHHHcCCceechhHHHHHHh
Q 007803 124 APLILFVDSFQVN--APLQEKVSSIGAFITSKFCQECTHILVQHHMRVKGELLDAIVAKKPLVDVSWLEVVAE 194 (589)
Q Consensus 124 ~PlVl~~Ssl~~~--~~L~~~l~~LGg~vv~~ws~~cTHLV~~~s~r~T~KlL~ALi~gkpIVtp~wl~aLa~ 194 (589)
+=+|++.|+++.. ..|+.....||+++-.+|..+||||+. .+.+|+|.-+-+-+|--||+-+|+.++-+
T Consensus 319 ~GVV~VlSGfqNP~Rs~LRskAl~LGAkY~pDW~~gsThLIC--AF~NTPKy~QV~g~Gg~IV~keWI~~Cy~ 389 (508)
T KOG3226|consen 319 EGVVFVLSGFQNPERSTLRSKALTLGAKYQPDWNAGSTHLIC--AFPNTPKYRQVEGNGGTIVSKEWITECYA 389 (508)
T ss_pred hceEEEEecccCchHHHHHHHHHhhcccccCCcCCCceeEEE--ecCCCcchhhcccCCceEeeHHHHHHHHH
Confidence 3456666777763 889999999999999999999999999 79999999999999999999999998843
No 20
>KOG0245 consensus Kinesin-like protein [Cytoskeleton]
Probab=95.46 E-value=0.031 Score=66.37 Aligned_cols=86 Identities=26% Similarity=0.474 Sum_probs=69.2
Q ss_pred CCCeEEEecCCeEEEccCC----CCeeecCCCcccccceEEEEeecccCCcccCCCCCcccccEEEEECCccceEEeCcC
Q 007803 13 GEDKYYIFSKGNYKVGRKG----CDIIINKDKGVSRVHAEILVDEMISLNPFQDKSSKVSTTRVRIKDCSKYGTFINKNL 88 (589)
Q Consensus 13 G~~~~~Ll~g~~YtIGRk~----cdIvI~~D~sISR~HA~I~v~~~~~~~~~~~~~~~~~~~~v~I~DlSknGTfVNg~~ 88 (589)
.+--+|.++.+.-.|||.+ -||.+ +...|=-+||.|.-+.. + ..++|.=.-.--|||||
T Consensus 467 Se~LlY~ikeG~TrVG~~~a~~~~DI~L-sG~~I~~qHC~i~~~~g-------~-------~~vtl~p~e~aetyVNG-- 529 (1221)
T KOG0245|consen 467 SECLLYYIKEGETRVGREDASSRQDIVL-SGQLIREQHCSIRNEGG-------N-------DVVTLEPCEDAETYVNG-- 529 (1221)
T ss_pred hccEEEEeccCceecCCCCcccCCceEe-cchhhhhhceEEEecCC-------C-------ceEEeccCCccceeEcc--
Confidence 3457888899999999986 79999 77889999999998763 1 13566655667799999
Q ss_pred CCceeeeccCCceEEccCCCeEEEccCCcccceec
Q 007803 89 GSKEKVHEFPNKEATLKDGDLVSFGTGNATYRFCY 123 (589)
Q Consensus 89 ~~~ekI~~~~g~~~~L~~GD~I~fG~~~~~frl~~ 123 (589)
+.|. ++..|+.||+|-||. ...||+..
T Consensus 530 ---k~v~----ep~qL~~GdRiilG~-~H~frfn~ 556 (1221)
T KOG0245|consen 530 ---KLVT----EPTQLRSGDRIILGG-NHVFRFNH 556 (1221)
T ss_pred ---EEcC----CcceeccCCEEEEcC-ceeEEecC
Confidence 8886 799999999999997 45677754
No 21
>TIGR02500 type_III_yscD type III secretion apparatus protein, YscD/HrpQ family. This family represents a conserved protein of bacterial type III secretion systems. Gene symbols are variable from species to species. Members are designated YscD in Yersinia, HrpQ in Pseudomonas syringae, and EscD in enteropathogenic Escherichia coli. In the Chlamydiae, this model describes the C-terminal 400 residues of a longer protein.
Probab=94.93 E-value=0.071 Score=58.54 Aligned_cols=65 Identities=22% Similarity=0.379 Sum_probs=45.4
Q ss_pred eEEeeCCCCCCCCeEEEecCCeEEEc-cCC-CCeeecCCCcccccceEEEEeecccCCcccCCCCCcccccEEEEECCcc
Q 007803 3 WGLFPIDPLPGEDKYYIFSKGNYKVG-RKG-CDIIINKDKGVSRVHAEILVDEMISLNPFQDKSSKVSTTRVRIKDCSKY 80 (589)
Q Consensus 3 W~L~~~~~~~G~~~~~Ll~g~~YtIG-Rk~-cdIvI~~D~sISR~HA~I~v~~~~~~~~~~~~~~~~~~~~v~I~DlSkn 80 (589)
|.|.-.++..- .+-+.++++.|+|| +.. |||++ .|+.|||.|++|++... .+.+.|. ..
T Consensus 1 ~~lrvl~G~~~-G~~~~L~~g~~~iG~~~~~~di~L-~d~~~~~~h~~l~v~~~----------------~~~l~~~-~~ 61 (410)
T TIGR02500 1 WKLRVLSGPHR-GAELPLPEGNLVLGTDAADCDIVL-SDGGIAAVHVSLHVRLE----------------GVTLAGA-VE 61 (410)
T ss_pred CEEEEecCCCC-CcEEECCCCceEeccCCCCcEEEe-CCCCccchheEEEEcCc----------------eEEEecC-Cc
Confidence 54544332222 34555666669999 886 99999 79999999999999763 3566654 44
Q ss_pred ceEEeC
Q 007803 81 GTFINK 86 (589)
Q Consensus 81 GTfVNg 86 (589)
+.++|+
T Consensus 62 ~~~~~g 67 (410)
T TIGR02500 62 PAWEEG 67 (410)
T ss_pred ceeECC
Confidence 677777
No 22
>KOG3524 consensus Predicted guanine nucleotide exchange factor (PEBBLE) [Signal transduction mechanisms]
Probab=92.67 E-value=0.12 Score=59.64 Aligned_cols=141 Identities=14% Similarity=0.162 Sum_probs=91.6
Q ss_pred cCCCeEEEccCCcccceecCCeEEeecCccc-chhHHHHHHhcCCeecccccccceEEEEeccccchhhHHHHHHcCCce
Q 007803 105 KDGDLVSFGTGNATYRFCYAPLILFVDSFQV-NAPLQEKVSSIGAFITSKFCQECTHILVQHHMRVKGELLDAIVAKKPL 183 (589)
Q Consensus 105 ~~GD~I~fG~~~~~frl~~~PlVl~~Ssl~~-~~~L~~~l~~LGg~vv~~ws~~cTHLV~~~s~r~T~KlL~ALi~gkpI 183 (589)
+..|...++.+...|-....-+|+|+.+... +..|-..+..+||.|..+....+||++.+ +... .|.-.|+.. -|+
T Consensus 101 ~ae~~~tl~~srply~~~m~~vvlcfTg~rkk~e~lv~lvh~mgg~irkd~nsktthli~n-~s~g-ek~~~a~t~-~~~ 177 (850)
T KOG3524|consen 101 KAEDLMTLRAARPLYCELMKDVVMCFTGERKKKEELVDLVHYMGGSIRKDTNSKTTHLIAN-KVEG-EKQSIALVG-VPT 177 (850)
T ss_pred HHHhhhccccCCcccchhhcCceeeeeccchhhHHHHHHHHHhcceeEeeeccCceEEEee-cccc-eEEEEEeec-cce
Confidence 3445666676656666666777777754332 36777889999999999988899999994 3332 233335544 899
Q ss_pred echhHHHHHHhccCCCCCCCCCCCCCCCccCCCCccccCCcCcccCcCCcEEEEcCCCcccchhhHHHHHHHcCceEEE
Q 007803 184 VDVSWLEVVAEKSIRTDFPGCNSHVTTLIMEGDPVELANVDTLENCMRGYTFLLDSSMKYKYGDQLQSLLEVSGAKTLS 262 (589)
Q Consensus 184 Vtp~wl~aLa~~~~~~elPd~~dflPpl~ie~~~~~l~p~~~R~~LF~G~TFIf~~~~qy~~~~~L~~lIe~aGGkvll 262 (589)
+.|+|+-+.... |+...|.-.. .. ..+.-|...|.|..|.|.+=.+-++ +.|...++.-||+..-
T Consensus 178 ~rp~wv~~aw~~------rn~~yfda~~---~~----f~d~hrl~~feg~~~~f~gF~~ee~-~~m~~sle~~gg~~a~ 242 (850)
T KOG3524|consen 178 MRPDWVTEAWKH------RNDSYFDAME---PC----FVDKHRLGVFEGLSLFFHGFKQEEI-DDMLRSLENTGGKLAP 242 (850)
T ss_pred echHhhhhhhcC------cchhhhhhhc---cc----hhhhhccccccCCeEeecCCcHHHH-HHHHHHHHhcCCcccC
Confidence 999998554322 1111121000 00 1144678899999999988777554 5677777788887653
No 23
>KOG2293 consensus Daxx-interacting protein MSP58/p78, contains FHA domain [Transcription; Signal transduction mechanisms]
Probab=91.81 E-value=0.29 Score=54.91 Aligned_cols=77 Identities=21% Similarity=0.235 Sum_probs=60.5
Q ss_pred eEEEecCCeEEEccCC--CCeeec-----CCCcccccceEEEEeecccCCcccCCCCCcccccEEEEECCccceEEeCcC
Q 007803 16 KYYIFSKGNYKVGRKG--CDIIIN-----KDKGVSRVHAEILVDEMISLNPFQDKSSKVSTTRVRIKDCSKYGTFINKNL 88 (589)
Q Consensus 16 ~~~Ll~g~~YtIGRk~--cdIvI~-----~D~sISR~HA~I~v~~~~~~~~~~~~~~~~~~~~v~I~DlSknGTfVNg~~ 88 (589)
..|++.++..++||.. |.|=|+ .-..|||..|.|...+. ..+.|..+-|+-.||||
T Consensus 441 skh~mrk~EVtlGRat~d~~VDIDLgkegpatKISRRQa~IkL~n~---------------GsF~IkNlGK~~I~vng-- 503 (547)
T KOG2293|consen 441 SKHYMRKKEVTLGRATGDLKVDIDLGKEGPATKISRRQALIKLKND---------------GSFFIKNLGKRSILVNG-- 503 (547)
T ss_pred hHhhhcCcceEeeccCCCcceeeeccccCccceeeccceeEEeccC---------------CcEEeccCcceeEEeCC--
Confidence 4456678899999997 433332 33569999999999874 15999999999999999
Q ss_pred CCceeeeccCCceEEccCCCeEEEcc
Q 007803 89 GSKEKVHEFPNKEATLKDGDLVSFGT 114 (589)
Q Consensus 89 ~~~ekI~~~~g~~~~L~~GD~I~fG~ 114 (589)
.+|. +|+.+.|++...|++-.
T Consensus 504 ---~~l~--~gq~~~L~~nclveIrg 524 (547)
T KOG2293|consen 504 ---GELD--RGQKVILKNNCLVEIRG 524 (547)
T ss_pred ---cccc--CCceEEeccCcEEEEcc
Confidence 6775 68889998888888764
No 24
>PRK06195 DNA polymerase III subunit epsilon; Validated
Probab=89.80 E-value=3.1 Score=44.03 Aligned_cols=156 Identities=11% Similarity=0.042 Sum_probs=85.5
Q ss_pred hhHHHHHHhcCCeecccccccceEEEEeccccchhhHHHHHHcCCceechhHHHHHHhccCCCCCCCCCCCCCCCccCC-
Q 007803 137 APLQEKVSSIGAFITSKFCQECTHILVQHHMRVKGELLDAIVAKKPLVDVSWLEVVAEKSIRTDFPGCNSHVTTLIMEG- 215 (589)
Q Consensus 137 ~~L~~~l~~LGg~vv~~ws~~cTHLV~~~s~r~T~KlL~ALi~gkpIVtp~wl~aLa~~~~~~elPd~~dflPpl~ie~- 215 (589)
..|...+..+|... -.|-.+ .-...|.+++.+|+.-..+-+...+..+... .........|.|......
T Consensus 128 ~~L~~L~~~~gi~~-------~~H~Al-~DA~ata~l~~~l~~~~~~~~~~~l~~~~~~--~~~~~~~~~~~~~~~~~~~ 197 (309)
T PRK06195 128 ARLNTVNNFLGYEF-------KHHDAL-ADAMACSNILLNISKELNSKDINEISKLLGV--TLGYVNENGYKPSSRKGRI 197 (309)
T ss_pred CCHHHHHHHcCCCC-------cccCCH-HHHHHHHHHHHHHHHHhccCCHHHHHHHhCC--ccccccccCCCcccccccc
Confidence 45667777777532 136666 3688899999998865544444444444211 111111223333321000
Q ss_pred ---CCccc--cCCcC----cccCcCCcEEEEcCCCcccchhhHHHHHHHcCceEEEeeecCCCCCCccccccCeEEEEeC
Q 007803 216 ---DPVEL--ANVDT----LENCMRGYTFLLDSSMKYKYGDQLQSLLEVSGAKTLSIESFCPSSQDSECVEHNSVVYVLP 286 (589)
Q Consensus 216 ---~~~~l--~p~~~----R~~LF~G~TFIf~~~~qy~~~~~L~~lIe~aGGkvll~e~~~~~~~~~~~g~~~~vVlV~p 286 (589)
.+-.+ .+++. -...|.|++|+|+..-...-.+.+..+|+..||++..- ++..+ -.||+.
T Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~l~g~~~vfTG~l~~~~R~~~~~~~~~~Gg~v~~s--Vs~~t----------~~lV~G 265 (309)
T PRK06195 198 LKRSNRQAPRKKKKIIESFGFTAFKEEVVVFTGGLASMTRDEAMILVRRLGGTVGSS--VTKKT----------TYLVTN 265 (309)
T ss_pred cccCCCCCCcccccccccCCCccccCCEEEEccccCCCCHHHHHHHHHHhCCEecCC--cccCc----------eEEEEC
Confidence 00000 11221 23579999999998874223578999999999998521 12222 233333
Q ss_pred ----CCC-----hhhHHHHHhhC----CCCccchhHHHHHH
Q 007803 287 ----RKS-----EDCSKSILKLS----SLSRVNEKDLICAV 314 (589)
Q Consensus 287 ----~~w-----~~~~~~~~~l~----glR~I~e~E~l~AI 314 (589)
..| .-++.+..+++ |.+.|+|.||+.-|
T Consensus 266 ~~~~~~~~~~~~~~K~~kA~~l~~~g~~i~ii~E~~f~~l~ 306 (309)
T PRK06195 266 TKDIEDLNREEMSNKLKKAIDLKKKGQNIKFLNEEEFLQKC 306 (309)
T ss_pred CCcchhhcccCcChHHHHHHHHHhCCCCcEEecHHHHHHHH
Confidence 123 22344444442 78999999999865
No 25
>KOG3548 consensus DNA damage checkpoint protein RHP9/CRB2/53BP1 [Replication, recombination and repair]
Probab=89.56 E-value=2.4 Score=50.71 Aligned_cols=150 Identities=12% Similarity=0.079 Sum_probs=82.7
Q ss_pred EEEeccccchhhHHHHHHcCCceechhHHHHHHhccCCCCCCCCCCCCCCCc--cC-CCCccccCC------------cC
Q 007803 161 ILVQHHMRVKGELLDAIVAKKPLVDVSWLEVVAEKSIRTDFPGCNSHVTTLI--ME-GDPVELANV------------DT 225 (589)
Q Consensus 161 LV~~~s~r~T~KlL~ALi~gkpIVtp~wl~aLa~~~~~~elPd~~dflPpl~--ie-~~~~~l~p~------------~~ 225 (589)
||. ...-+|.|.|.||+.|.|.|.+.|+.++..++- +-+..+|+.|-. +. .....+.|. -.
T Consensus 991 LIs-dth~Rt~KYLeaLA~giPcVh~~fI~aC~e~nr---~Vdy~~YLLpsGyS~rlds~l~~~i~~fn~~~nLkd~~l~ 1066 (1176)
T KOG3548|consen 991 LIS-DTHYRTHKYLEALARGIPCVHNTFIQACGEQNR---CVDYTDYLLPSGYSIRLDSQLMPAIEPFNPSENLKDTTLY 1066 (1176)
T ss_pred Eee-hhhhHHHHHHHHHHcCCCcccHHHHHHHHhccc---cccchhhcccCccccccccccccCccccCchhhccceeeE
Confidence 445 578899999999999999999999999987642 344666665542 11 112222221 12
Q ss_pred cccCcCCcEEEEcCCCcccchhhHHHHHHHcCceEEEeeecCCCCCCccccccCeEEEEeCCCChhhHHHHHhhCCCCcc
Q 007803 226 LENCMRGYTFLLDSSMKYKYGDQLQSLLEVSGAKTLSIESFCPSSQDSECVEHNSVVYVLPRKSEDCSKSILKLSSLSRV 305 (589)
Q Consensus 226 R~~LF~G~TFIf~~~~qy~~~~~L~~lIe~aGGkvll~e~~~~~~~~~~~g~~~~vVlV~p~~w~~~~~~~~~l~glR~I 305 (589)
++..+.|+..++.... -+|-+.-.++++.||..++...-......... +....+|++-+ --.+....++...+..++
T Consensus 1067 vk~~l~~~~v~q~gp~-~~f~e~~~e~le~G~aa~vd~~hada~~~D~~-l~~fdvvl~d~-~~~~svmk~ad~l~~pvv 1143 (1176)
T KOG3548|consen 1067 VKSTLSAREVTQTGPG-GTFIEIWKEILELGGAAVVDGYHADAETLDET-LLKFDVVLVDG-TFRDSVMKYADTLGAPVV 1143 (1176)
T ss_pred eeccccceeEEEecCC-cchHHHHHHHHHhhchheeccccccccccccc-ccceeEEEecC-ccHHHHHHHHHHhCCCcc
Confidence 4555666655554222 13444566777777765553311111111111 11222333322 333445566666667777
Q ss_pred chhHHHHHHHhC
Q 007803 306 NEKDLICAVLSG 317 (589)
Q Consensus 306 ~e~E~l~AIL~~ 317 (589)
.+.=++.-|+.|
T Consensus 1144 s~EWvIQtiI~~ 1155 (1176)
T KOG3548|consen 1144 SSEWVIQTIILG 1155 (1176)
T ss_pred ChhHhheeeecc
Confidence 666555555554
No 26
>PLN03123 poly [ADP-ribose] polymerase; Provisional
Probab=87.14 E-value=1.2 Score=54.31 Aligned_cols=60 Identities=17% Similarity=0.209 Sum_probs=50.2
Q ss_pred hhHHHHHHhcCCeecccccccceEEEEecc-ccchhhHHHHHHcCCceechhHHHHHHhcc
Q 007803 137 APLQEKVSSIGAFITSKFCQECTHILVQHH-MRVKGELLDAIVAKKPLVDVSWLEVVAEKS 196 (589)
Q Consensus 137 ~~L~~~l~~LGg~vv~~ws~~cTHLV~~~s-~r~T~KlL~ALi~gkpIVtp~wl~aLa~~~ 196 (589)
..|+..+..+||.+....+..|||+++... -+...|+-.|-..|.|||+.+||.++...+
T Consensus 410 ~~~k~~Ie~~GG~~s~~v~~~~t~l~tt~e~~k~~~kv~qAk~~~ipIVsedwL~ds~~~~ 470 (981)
T PLN03123 410 TEWKAKIEEAGGVFHATVKKDTNCLVVCGELDDEDAEMRKARRMKIPIVREDYLVDCFKKK 470 (981)
T ss_pred HHHHHHHHhcCCEEeeeccCCceEEEccHHhhhcchHHHHHHhcCCCcccHHHHHHHHhcc
Confidence 788999999999999998889999988421 245677888888899999999999886554
No 27
>PLN03122 Poly [ADP-ribose] polymerase; Provisional
Probab=85.57 E-value=2 Score=51.35 Aligned_cols=58 Identities=17% Similarity=0.291 Sum_probs=48.4
Q ss_pred chhHHHHHHhcCCeecccccccceEEEEecccc---c-hhhHHHHHHcCCceechhHHHHHHhc
Q 007803 136 NAPLQEKVSSIGAFITSKFCQECTHILVQHHMR---V-KGELLDAIVAKKPLVDVSWLEVVAEK 195 (589)
Q Consensus 136 ~~~L~~~l~~LGg~vv~~ws~~cTHLV~~~s~r---~-T~KlL~ALi~gkpIVtp~wl~aLa~~ 195 (589)
...|+..+..+||.++.+. ..+||+|+. ... . +.|+-.|...|.|||+.+||.++...
T Consensus 205 r~elK~~Ie~~GGkvsssV-s~~T~lIvt-~~ev~k~gsSKlkkAk~lgIpIVsEd~L~d~i~~ 266 (815)
T PLN03122 205 HQYWKKDIEKHGGKVANSV-EGVTCLVVS-PAERERGGSSKIAEAMERGIPVVREAWLIDSIEK 266 (815)
T ss_pred HHHHHHHHHHcCCEEcccc-ccceEEEEc-CccccccCccHHHHHHHcCCcCccHHHHHHHHhc
Confidence 4788999999999999986 689999983 322 3 47899999999999999999888654
No 28
>TIGR01663 PNK-3'Pase polynucleotide 5'-kinase 3'-phosphatase. Note that the EC number for the kinase function is: 2.7.1.78
Probab=85.49 E-value=2.3 Score=48.52 Aligned_cols=87 Identities=20% Similarity=0.246 Sum_probs=66.5
Q ss_pred CeEEEecCCeEEEccCCCCeeecCCCcccccceEEEEeecccCCcccCCCCCcccccEEEEECCccceEEeCcCCCceee
Q 007803 15 DKYYIFSKGNYKVGRKGCDIIINKDKGVSRVHAEILVDEMISLNPFQDKSSKVSTTRVRIKDCSKYGTFINKNLGSKEKV 94 (589)
Q Consensus 15 ~~~~Ll~g~~YtIGRk~cdIvI~~D~sISR~HA~I~v~~~~~~~~~~~~~~~~~~~~v~I~DlSknGTfVNg~~~~~ekI 94 (589)
.....++++..+|||..-.-+ .|+..||+..++.++-. ...+.++=|-.|=+-||| .-+
T Consensus 24 ~~~~~~~~~~~~~gr~pet~i--~d~~cs~~qv~l~a~~~--------------~~~v~~k~lg~np~~~~~-----~~~ 82 (526)
T TIGR01663 24 HHFIHLDAGALFLGRGPETGI--RDRKCSKRQIELQADLE--------------KATVALKQLGVNPCGTGG-----LEL 82 (526)
T ss_pred CCeeccCCCceEEccCccccc--chhhhchhhheeeeccc--------------CceEEEEEccCCCcccCc-----eEe
Confidence 344455678888999984433 48899999999998763 126888888999999999 434
Q ss_pred eccCCceEEccCCCeEEEccCCcccceecC
Q 007803 95 HEFPNKEATLKDGDLVSFGTGNATYRFCYA 124 (589)
Q Consensus 95 ~~~~g~~~~L~~GD~I~fG~~~~~frl~~~ 124 (589)
.+|....|++||.+.+=.....|++.|.
T Consensus 83 --~~~~~~~l~~g~~l~~v~~~~~~~~~f~ 110 (526)
T TIGR01663 83 --KPGGEGELGHGDLLEIVNGLHPLTLQFE 110 (526)
T ss_pred --cCCCeeeecCCCEEEEeccccceeEEee
Confidence 4789999999999988766666766664
No 29
>KOG1892 consensus Actin filament-binding protein Afadin [Cytoskeleton]
Probab=84.88 E-value=1.6 Score=52.32 Aligned_cols=83 Identities=20% Similarity=0.320 Sum_probs=61.9
Q ss_pred CCCCeEEEecCCeEEEccCC---CCeeecCCCcccccceEEEEeecccCCcccCCCCCcccccEEEEEC-CccceEEeCc
Q 007803 12 PGEDKYYIFSKGNYKVGRKG---CDIIINKDKGVSRVHAEILVDEMISLNPFQDKSSKVSTTRVRIKDC-SKYGTFINKN 87 (589)
Q Consensus 12 ~G~~~~~Ll~g~~YtIGRk~---cdIvI~~D~sISR~HA~I~v~~~~~~~~~~~~~~~~~~~~v~I~Dl-SknGTfVNg~ 87 (589)
.+..+.+-|.-...-||-.. ..|-+ -.++|=-.||-|..-.. .++++=+ -.-=|||||
T Consensus 367 ~~s~~ri~L~~~vtEVGs~~~~~~~iqL-fGP~IqprHc~it~meG----------------VvTvTP~~~DA~t~VnG- 428 (1629)
T KOG1892|consen 367 SDSRKRIRLQLSVTEVGSEKLDDNSIQL-FGPGIQPRHCDITNMEG----------------VVTVTPRSMDAETYVNG- 428 (1629)
T ss_pred CCcceeEEeccCceeccccccCCcceee-eCCCCCccccchhhccc----------------eEEecccccchhhhccc-
Confidence 34456666666777788775 34656 67899999999987542 4688877 455699999
Q ss_pred CCCceeeeccCCceEEccCCCeEEEccCCcccce
Q 007803 88 LGSKEKVHEFPNKEATLKDGDLVSFGTGNATYRF 121 (589)
Q Consensus 88 ~~~~ekI~~~~g~~~~L~~GD~I~fG~~~~~frl 121 (589)
.+|- +...|++|+.|+||.. ..|+|
T Consensus 429 ----h~is----qttiL~~G~~v~fGa~-hsfkF 453 (1629)
T KOG1892|consen 429 ----HRIS----QTTILQSGMKVQFGAS-HSFKF 453 (1629)
T ss_pred ----eecc----hhhhhccCCEEEeccc-eeEEe
Confidence 7885 7899999999999974 34555
No 30
>PF00533 BRCT: BRCA1 C Terminus (BRCT) domain; InterPro: IPR001357 The BRCT domain (after the C_terminal domain of a breast cancer susceptibility protein) is found predominantly in proteins involved in cell cycle checkpoint functions responsive to DNA damage [], for example as found in the breast cancer DNA-repair protein BRCA1. The domain is an approximately 100 amino acid tandem repeat, which appears to act as a phospho-protein binding domain []. A chitin biosynthesis protein from yeast also seems to belong to this group. ; GO: 0005622 intracellular; PDB: 3L46_A 3AL3_A 3AL2_A 1WF6_A 3II6_X 2NTE_B 3FA2_A 2R1Z_A 2COK_A 2K7F_A ....
Probab=83.16 E-value=1.6 Score=35.25 Aligned_cols=35 Identities=17% Similarity=0.288 Sum_probs=27.0
Q ss_pred cccCcCCcEEEEcCCCcccchhhHHHHHHHcCceEE
Q 007803 226 LENCMRGYTFLLDSSMKYKYGDQLQSLLEVSGAKTL 261 (589)
Q Consensus 226 R~~LF~G~TFIf~~~~qy~~~~~L~~lIe~aGGkvl 261 (589)
+..+|+|++|++......+ .+.|..+|+..||++.
T Consensus 2 ~~~~F~g~~f~i~~~~~~~-~~~l~~~i~~~GG~v~ 36 (78)
T PF00533_consen 2 KPKIFEGCTFCISGFDSDE-REELEQLIKKHGGTVS 36 (78)
T ss_dssp STTTTTTEEEEESSTSSSH-HHHHHHHHHHTTEEEE
T ss_pred CCCCCCCEEEEEccCCCCC-HHHHHHHHHHcCCEEE
Confidence 5689999999993333322 3689999999999983
No 31
>smart00292 BRCT breast cancer carboxy-terminal domain.
Probab=80.68 E-value=15 Score=28.74 Aligned_cols=76 Identities=17% Similarity=0.222 Sum_probs=44.7
Q ss_pred cCcCCcEEEEcCCCcccchhhHHHHHHHcCceEEEeeecCCCCCCccccccCeEEEEeC-CCChhhHHHHHhhCCCCccc
Q 007803 228 NCMRGYTFLLDSSMKYKYGDQLQSLLEVSGAKTLSIESFCPSSQDSECVEHNSVVYVLP-RKSEDCSKSILKLSSLSRVN 306 (589)
Q Consensus 228 ~LF~G~TFIf~~~~qy~~~~~L~~lIe~aGGkvll~e~~~~~~~~~~~g~~~~vVlV~p-~~w~~~~~~~~~l~glR~I~ 306 (589)
.+|+|++|++.......-.+.+..+|...||++...-. +. +-..+|.. ..+...........+...++
T Consensus 1 ~~f~g~~~~~~g~~~~~~~~~l~~~i~~~Gg~~~~~~~--~~---------~~thvi~~~~~~~~~~~~~~~~~~~~iV~ 69 (80)
T smart00292 1 KLFKGKVFVITGKFDKNERDELKELIEALGGKVTSSLS--SK---------TTTHVIVGSPEGGKLELLLAIALGIPIVT 69 (80)
T ss_pred CccCCeEEEEeCCCCCccHHHHHHHHHHcCCEEecccC--cc---------ceeEEEEcCCCCccHHHHHHHHcCCCCcc
Confidence 47999999998733333457999999999999863211 10 11222222 23322213444556777777
Q ss_pred hhHHHHHH
Q 007803 307 EKDLICAV 314 (589)
Q Consensus 307 e~E~l~AI 314 (589)
+.=|.+-|
T Consensus 70 ~~Wi~~~~ 77 (80)
T smart00292 70 EDWLLDCL 77 (80)
T ss_pred HHHHHHHH
Confidence 76665544
No 32
>PRK06063 DNA polymerase III subunit epsilon; Provisional
Probab=78.24 E-value=7.8 Score=41.31 Aligned_cols=70 Identities=10% Similarity=0.104 Sum_probs=53.8
Q ss_pred cCCeEEeecCccc-chhHHHHHHhcCCeecccccccceEEEEeccccchhhHHHHHHcCCceechhHHHHH
Q 007803 123 YAPLILFVDSFQV-NAPLQEKVSSIGAFITSKFCQECTHILVQHHMRVKGELLDAIVAKKPLVDVSWLEVV 192 (589)
Q Consensus 123 ~~PlVl~~Ssl~~-~~~L~~~l~~LGg~vv~~ws~~cTHLV~~~s~r~T~KlL~ALi~gkpIVtp~wl~aL 192 (589)
.-..++++..+.. ...+.+.+..+|+.+..+.+..++.||+.+.-..+.|+--|--.|.||++.+-|.++
T Consensus 234 ~g~~~v~TG~l~~~R~e~~~~~~~~G~~v~~sVs~~t~~lv~g~~~~~ssK~~kA~~~gi~ii~e~~f~~l 304 (313)
T PRK06063 234 QGMRVALSAEVSRTHEELVERILHAGLAYSDSVDRDTSLVVCNDPAPEQGKGYHARQLGVPVLDEAAFLEL 304 (313)
T ss_pred CCCEEEEecCCCCCHHHHHHHHHHcCCEecCccccCccEEEECCCCCcccHHHHHHHcCCccccHHHHHHH
Confidence 3344556555543 388899999999999999999999999943333447999999999999999966555
No 33
>KOG1929 consensus Nucleotide excision repair factor NEF2, RAD4/CUT5 component [Replication, recombination and repair]
Probab=76.25 E-value=8.7 Score=46.03 Aligned_cols=177 Identities=15% Similarity=0.125 Sum_probs=100.1
Q ss_pred hhHHHHHHhcCCeecccccccceEEEEeccccchhhHHHHHHcCCceechhHHHHHHhccCCCCCCCCCCCCCCCccCCC
Q 007803 137 APLQEKVSSIGAFITSKFCQECTHILVQHHMRVKGELLDAIVAKKPLVDVSWLEVVAEKSIRTDFPGCNSHVTTLIMEGD 216 (589)
Q Consensus 137 ~~L~~~l~~LGg~vv~~ws~~cTHLV~~~s~r~T~KlL~ALi~gkpIVtp~wl~aLa~~~~~~elPd~~dflPpl~ie~~ 216 (589)
..|...+..+||....++...|||+++ .-..+.|.+.|--++++|++.+|+..+-..... . ...-+++++.
T Consensus 26 ~~l~~~~~~~Gg~~~~~~t~~~thli~--~~~~s~~~~~a~~~~~~~~~~~wi~~~~d~~~~-~--~e~~~~~~l~---- 96 (811)
T KOG1929|consen 26 EELSKKFIKLGGIDFKDFTPSVTHLIV--GSVTSSKYAAAHRFDIKVLDSSWIDYIYDLWLL-N--KEIRLLDPLR---- 96 (811)
T ss_pred HHHHHHHHhcCceeeeccCCcCceeec--ccccccchhhhhcCCCceecchHHHHHHHHhhh-h--ccCccCccch----
Confidence 788899999999999999999999999 455555668888899999999999877433211 0 1111111110
Q ss_pred CccccCCcCcccCcCCcEEEEcCCCcccchhhHHHHHHHcCceEEEeeecCCCCCCccccccCeEEEEeCCCChhhHHHH
Q 007803 217 PVELANVDTLENCMRGYTFLLDSSMKYKYGDQLQSLLEVSGAKTLSIESFCPSSQDSECVEHNSVVYVLPRKSEDCSKSI 296 (589)
Q Consensus 217 ~~~l~p~~~R~~LF~G~TFIf~~~~qy~~~~~L~~lIe~aGGkvll~e~~~~~~~~~~~g~~~~vVlV~p~~w~~~~~~~ 296 (589)
...+--.|.| .+|+++.-+......++.+|...||..+..-. .. + +. +.+.|.--.... +.
T Consensus 97 ------~~~~~p~~~~-~~Vc~tgl~~~eK~ei~~~v~k~gg~~~~~L~--s~--v------~~-~~~~~~~~~~kY-e~ 157 (811)
T KOG1929|consen 97 ------DTMKCPGFFG-LKVCLTGLSGDEKSEIKILVPKHGGTLHRSLS--SD--V------NS-LKILPEVKTEKY-EQ 157 (811)
T ss_pred ------hhhcCCcccc-eEEEecccchHHHHHHHHHhhhcccEEehhhh--hh--h------he-eeeccccchHHH-HH
Confidence 0111222333 34555554433345789999999998763322 00 0 11 222221111222 12
Q ss_pred HhhCCCCccchhHHHHHHHhCC-CCCCcccCCCCCeEeeccCCCCcce
Q 007803 297 LKLSSLSRVNEKDLICAVLSGH-LDPSVLISPSPPVLISSSCSTDETV 343 (589)
Q Consensus 297 ~~l~glR~I~e~E~l~AIL~~~-ldaS~L~~P~~~~~~~~~~~~d~t~ 343 (589)
+-.-..+.++...+..+|=.+. ++...++=+ ++..++|...+-|.
T Consensus 158 al~wn~~v~~~~w~~~s~~~~~~~~~~~~e~~--~~~~~is~~~~~~~ 203 (811)
T KOG1929|consen 158 ALKWNIPVVSDDWLFDSIEKTAVLETKPYEGA--PVAEAISGPIGSTL 203 (811)
T ss_pred HHhhCCccccHHHHhhhhcccccccccccccc--cccceeccCCcccc
Confidence 2233467778888888877642 333344444 33345545444443
No 34
>PRK06063 DNA polymerase III subunit epsilon; Provisional
Probab=75.35 E-value=9.2 Score=40.75 Aligned_cols=74 Identities=8% Similarity=0.056 Sum_probs=49.9
Q ss_pred ccCcCCcEEEEcCCCcccchhhHHHHHHHcCceEEEeeecCCCCCCccccccCeEEEEeCCCCh--hhHHHHHhhCCCCc
Q 007803 227 ENCMRGYTFLLDSSMKYKYGDQLQSLLEVSGAKTLSIESFCPSSQDSECVEHNSVVYVLPRKSE--DCSKSILKLSSLSR 304 (589)
Q Consensus 227 ~~LF~G~TFIf~~~~qy~~~~~L~~lIe~aGGkvll~e~~~~~~~~~~~g~~~~vVlV~p~~w~--~~~~~~~~l~glR~ 304 (589)
..||.|++|+|+..-.+ -.+.+..+|+..||++..- ++..+ -.||...... -+. .-++..|...
T Consensus 230 ~~l~~g~~~v~TG~l~~-~R~e~~~~~~~~G~~v~~s--Vs~~t----------~~lv~g~~~~~ssK~-~kA~~~gi~i 295 (313)
T PRK06063 230 RPLVQGMRVALSAEVSR-THEELVERILHAGLAYSDS--VDRDT----------SLVVCNDPAPEQGKG-YHARQLGVPV 295 (313)
T ss_pred CcccCCCEEEEecCCCC-CHHHHHHHHHHcCCEecCc--cccCc----------cEEEECCCCCcccHH-HHHHHcCCcc
Confidence 46899999999988764 3579999999999998511 11222 1333332111 123 4556679999
Q ss_pred cchhHHHHHH
Q 007803 305 VNEKDLICAV 314 (589)
Q Consensus 305 I~e~E~l~AI 314 (589)
|+|.||+..+
T Consensus 296 i~e~~f~~ll 305 (313)
T PRK06063 296 LDEAAFLELL 305 (313)
T ss_pred ccHHHHHHHH
Confidence 9999998755
No 35
>PRK14351 ligA NAD-dependent DNA ligase LigA; Provisional
Probab=71.00 E-value=13 Score=43.96 Aligned_cols=76 Identities=13% Similarity=0.198 Sum_probs=51.4
Q ss_pred ccCcCCcEEEEcCCCcccchhhHHHHHHHcCceEEEeeecCCCCCCccccccCeEEEEeCCCCh-hhHHHHHhhCCCCcc
Q 007803 227 ENCMRGYTFLLDSSMKYKYGDQLQSLLEVSGAKTLSIESFCPSSQDSECVEHNSVVYVLPRKSE-DCSKSILKLSSLSRV 305 (589)
Q Consensus 227 ~~LF~G~TFIf~~~~qy~~~~~L~~lIe~aGGkvll~e~~~~~~~~~~~g~~~~vVlV~p~~w~-~~~~~~~~l~glR~I 305 (589)
...|.|++|+|+..-.---.+.+..+|+..||++..- ++..+ -.||+..... -++ ..++..|.+.|
T Consensus 607 ~~~l~g~~~v~TG~l~~~~R~~~~~~i~~~Gg~v~~s--Vs~kt----------~~Lv~G~~~g~sKl-~kA~~lgi~ii 673 (689)
T PRK14351 607 GDALDGLTFVFTGSLSGYTRSEAQELVEAHGGNATGS--VSGNT----------DYLVVGENPGQSKR-DDAEANDVPTL 673 (689)
T ss_pred CCCCCCcEEEEccCCCCCCHHHHHHHHHHcCCEEcCC--cCCCc----------cEEEEcCCCChhHH-HHHHHCCCeEe
Confidence 4579999999998765223578999999999998521 12222 2344443333 234 44566799999
Q ss_pred chhHHHHHHH
Q 007803 306 NEKDLICAVL 315 (589)
Q Consensus 306 ~e~E~l~AIL 315 (589)
+|.||+..|-
T Consensus 674 ~E~~f~~ll~ 683 (689)
T PRK14351 674 DEEEFEELLA 683 (689)
T ss_pred cHHHHHHHHH
Confidence 9999987553
No 36
>PRK14350 ligA NAD-dependent DNA ligase LigA; Provisional
Probab=70.97 E-value=11 Score=44.26 Aligned_cols=73 Identities=12% Similarity=0.010 Sum_probs=49.1
Q ss_pred ccCcCCcEEEEcCCCcccchhhHHHHHHHcCceEEEeeecCCCCCCccccccCeEEEEeCCCChhhHHHHHhhCCCCccc
Q 007803 227 ENCMRGYTFLLDSSMKYKYGDQLQSLLEVSGAKTLSIESFCPSSQDSECVEHNSVVYVLPRKSEDCSKSILKLSSLSRVN 306 (589)
Q Consensus 227 ~~LF~G~TFIf~~~~qy~~~~~L~~lIe~aGGkvll~e~~~~~~~~~~~g~~~~vVlV~p~~w~~~~~~~~~l~glR~I~ 306 (589)
...|.|+||+|+..-.-.-.+.++.+|+..||++..- ++..+. .||......-++ .-++..|...|+
T Consensus 591 ~~~l~gktfV~TG~l~~~~R~e~~~lie~~Ggkv~ss--VSkktd----------~LV~G~~aGsKl-~KA~~LGI~Ii~ 657 (669)
T PRK14350 591 NSFLFGKKFCITGSFNGYSRSVLIDKLTKKGAIFNTC--VTKYLD----------FLLVGEKAGLKL-KKANNLGIKIMS 657 (669)
T ss_pred CCccCCcEEEEecccCCCCHHHHHHHHHHcCCEEecc--ccCCCc----------EEEECCCCCchH-HHHHHcCCEEec
Confidence 3569999999988653212478999999999998631 222221 333343333333 456667999999
Q ss_pred hhHHHH
Q 007803 307 EKDLIC 312 (589)
Q Consensus 307 e~E~l~ 312 (589)
|.||+.
T Consensus 658 e~~f~~ 663 (669)
T PRK14350 658 LFDIKS 663 (669)
T ss_pred HHHHHH
Confidence 999976
No 37
>COG0272 Lig NAD-dependent DNA ligase (contains BRCT domain type II) [DNA replication, recombination, and repair]
Probab=67.81 E-value=17 Score=42.73 Aligned_cols=73 Identities=18% Similarity=0.223 Sum_probs=49.6
Q ss_pred cCcCCcEEEEcCCCcccchhhHHHHHHHcCceEEEeeecCCCCCCccccccCeEEEEeCCCChhhHHHHHhhCCCCccch
Q 007803 228 NCMRGYTFLLDSSMKYKYGDQLQSLLEVSGAKTLSIESFCPSSQDSECVEHNSVVYVLPRKSEDCSKSILKLSSLSRVNE 307 (589)
Q Consensus 228 ~LF~G~TFIf~~~~qy~~~~~L~~lIe~aGGkvll~e~~~~~~~~~~~g~~~~vVlV~p~~w~~~~~~~~~l~glR~I~e 307 (589)
..|.|+||+|+..-.--..+..+.+|+..|||+-.- ++.++ -.||.....--++ .-++..|.+.|+|
T Consensus 593 ~~l~gkt~V~TGtL~~~sR~eak~~le~lGakv~~S--VSkkt----------D~vvaG~~aGSKl-~kA~eLgv~i~~E 659 (667)
T COG0272 593 SPLAGKTFVLTGTLEGMSRDEAKALLEALGAKVSGS--VSKKT----------DYVVAGENAGSKL-AKAQELGVKIIDE 659 (667)
T ss_pred cccCCCEEEEeccCCCCCHHHHHHHHHHcCCEEece--ecccc----------cEEEEcCCCChHH-HHHHHcCCeEecH
Confidence 789999999988877223578999999999998511 11221 1333333222244 4566778999999
Q ss_pred hHHHHH
Q 007803 308 KDLICA 313 (589)
Q Consensus 308 ~E~l~A 313 (589)
.+|+.-
T Consensus 660 ~~~~~l 665 (667)
T COG0272 660 EEFLAL 665 (667)
T ss_pred HHHHHh
Confidence 999764
No 38
>PRK06195 DNA polymerase III subunit epsilon; Validated
Probab=65.17 E-value=19 Score=38.15 Aligned_cols=66 Identities=14% Similarity=0.228 Sum_probs=46.8
Q ss_pred EEeecCccc--chhHHHHHHhcCCeecccccccceEEEEecc-------ccchhhHHHHHHc-----CCceechh-HHHH
Q 007803 127 ILFVDSFQV--NAPLQEKVSSIGAFITSKFCQECTHILVQHH-------MRVKGELLDAIVA-----KKPLVDVS-WLEV 191 (589)
Q Consensus 127 Vl~~Ssl~~--~~~L~~~l~~LGg~vv~~ws~~cTHLV~~~s-------~r~T~KlL~ALi~-----gkpIVtp~-wl~a 191 (589)
++++..+.. ...+.+.+..+||++..+.+..+++||+-.. .....|+-.|.-. +.+|++.+ |++-
T Consensus 226 ~vfTG~l~~~~R~~~~~~~~~~Gg~v~~sVs~~t~~lV~G~~~~~~~~~~~~~~K~~kA~~l~~~g~~i~ii~E~~f~~l 305 (309)
T PRK06195 226 VVFTGGLASMTRDEAMILVRRLGGTVGSSVTKKTTYLVTNTKDIEDLNREEMSNKLKKAIDLKKKGQNIKFLNEEEFLQK 305 (309)
T ss_pred EEEccccCCCCHHHHHHHHHHhCCEecCCcccCceEEEECCCcchhhcccCcChHHHHHHHHHhCCCCcEEecHHHHHHH
Confidence 444444532 3778899999999999999999999998210 2345677777665 88999887 4443
Q ss_pred H
Q 007803 192 V 192 (589)
Q Consensus 192 L 192 (589)
|
T Consensus 306 ~ 306 (309)
T PRK06195 306 C 306 (309)
T ss_pred H
Confidence 3
No 39
>PRK07956 ligA NAD-dependent DNA ligase LigA; Validated
Probab=63.74 E-value=20 Score=42.25 Aligned_cols=74 Identities=15% Similarity=0.172 Sum_probs=49.3
Q ss_pred cCcCCcEEEEcCCCcccchhhHHHHHHHcCceEEEeeecCCCCCCccccccCeEEEEeCCCChhhHHHHHhhCCCCccch
Q 007803 228 NCMRGYTFLLDSSMKYKYGDQLQSLLEVSGAKTLSIESFCPSSQDSECVEHNSVVYVLPRKSEDCSKSILKLSSLSRVNE 307 (589)
Q Consensus 228 ~LF~G~TFIf~~~~qy~~~~~L~~lIe~aGGkvll~e~~~~~~~~~~~g~~~~vVlV~p~~w~~~~~~~~~l~glR~I~e 307 (589)
..|.|++|+|+..-.---.+.+..+|+..||++..- ++..+. .||......-++ ..++..|.+.|+|
T Consensus 589 ~~~~g~~~v~TG~l~~~~R~e~~~~i~~~G~~v~~s--Vs~kt~----------~lv~G~~~gsK~-~kA~~lgI~ii~E 655 (665)
T PRK07956 589 VDLAGKTVVLTGTLEQLSRDEAKEKLEALGAKVSGS--VSKKTD----------LVVAGEAAGSKL-AKAQELGIEVLDE 655 (665)
T ss_pred CCccccEEEEeCCCCCCCHHHHHHHHHHcCCEEeCc--ccCCCC----------EEEECCCCChHH-HHHHHcCCeEEcH
Confidence 349999999998764213578999999999998521 222221 333332222233 4455569999999
Q ss_pred hHHHHHH
Q 007803 308 KDLICAV 314 (589)
Q Consensus 308 ~E~l~AI 314 (589)
.||+..|
T Consensus 656 ~~f~~~l 662 (665)
T PRK07956 656 EEFLRLL 662 (665)
T ss_pred HHHHHHH
Confidence 9998865
No 40
>PRK14350 ligA NAD-dependent DNA ligase LigA; Provisional
Probab=62.66 E-value=18 Score=42.66 Aligned_cols=66 Identities=15% Similarity=0.112 Sum_probs=53.5
Q ss_pred eEEeecCccc--chhHHHHHHhcCCeecccccccceEEEEeccccchhhHHHHHHcCCceechhHHHHHH
Q 007803 126 LILFVDSFQV--NAPLQEKVSSIGAFITSKFCQECTHILVQHHMRVKGELLDAIVAKKPLVDVSWLEVVA 193 (589)
Q Consensus 126 lVl~~Ssl~~--~~~L~~~l~~LGg~vv~~ws~~cTHLV~~~s~r~T~KlL~ALi~gkpIVtp~wl~aLa 193 (589)
.++++.++.. ...+++.+.++||+++.+.+..+++||+ +.....|+--|--.|.||++.+-|.++.
T Consensus 598 tfV~TG~l~~~~R~e~~~lie~~Ggkv~ssVSkktd~LV~--G~~aGsKl~KA~~LGI~Ii~e~~f~~~l 665 (669)
T PRK14350 598 KFCITGSFNGYSRSVLIDKLTKKGAIFNTCVTKYLDFLLV--GEKAGLKLKKANNLGIKIMSLFDIKSYV 665 (669)
T ss_pred EEEEecccCCCCHHHHHHHHHHcCCEEeccccCCCcEEEE--CCCCCchHHHHHHcCCEEecHHHHHHHh
Confidence 3455555532 3788999999999999999999999999 5667789999999999999998765554
No 41
>COG5275 BRCT domain type II [General function prediction only]
Probab=58.75 E-value=40 Score=34.66 Aligned_cols=81 Identities=16% Similarity=0.355 Sum_probs=53.9
Q ss_pred CcCcccCcCCcEEEEcCCCc-ccchhhHHHHHHHcCceEEEeeecCCCCCCccccccCeEEEEeCCCChhhHHHHHhhCC
Q 007803 223 VDTLENCMRGYTFLLDSSMK-YKYGDQLQSLLEVSGAKTLSIESFCPSSQDSECVEHNSVVYVLPRKSEDCSKSILKLSS 301 (589)
Q Consensus 223 ~~~R~~LF~G~TFIf~~~~q-y~~~~~L~~lIe~aGGkvll~e~~~~~~~~~~~g~~~~vVlV~p~~w~~~~~~~~~l~g 301 (589)
.+.-.+|+.|++|||+..-. .+ .+.-..++...||++--... . ..-++|.....--.=.+-.+..+
T Consensus 150 peg~~~cL~G~~fVfTG~l~Tls-R~~a~~lvk~yGgrvT~~pS--s----------kTtflvlGdnaGP~K~ekiKqlk 216 (276)
T COG5275 150 PEGERECLKGKVFVFTGDLKTLS-RDDAKTLVKVYGGRVTAVPS--S----------KTTFLVLGDNAGPSKMEKIKQLK 216 (276)
T ss_pred CCCCcccccccEEEEeccccccc-chhHHHHHHHhCCeeecccc--c----------ceeEEEecCCCChHHHHHHHHhC
Confidence 35567999999999987654 32 25678899999999753311 1 12234444333333345556678
Q ss_pred CCccchhHHHHHHHh
Q 007803 302 LSRVNEKDLICAVLS 316 (589)
Q Consensus 302 lR~I~e~E~l~AIL~ 316 (589)
...|+|.+|..-|-.
T Consensus 217 IkaidEegf~~LI~~ 231 (276)
T COG5275 217 IKAIDEEGFDSLIKD 231 (276)
T ss_pred CccccHHHHHHHHhc
Confidence 999999999887766
No 42
>COG0272 Lig NAD-dependent DNA ligase (contains BRCT domain type II) [DNA replication, recombination, and repair]
Probab=55.42 E-value=31 Score=40.60 Aligned_cols=65 Identities=8% Similarity=0.133 Sum_probs=53.0
Q ss_pred eEEeecCccc--chhHHHHHHhcCCeecccccccceEEEEeccccchhhHHHHHHcCCceechhHHHHH
Q 007803 126 LILFVDSFQV--NAPLQEKVSSIGAFITSKFCQECTHILVQHHMRVKGELLDAIVAKKPLVDVSWLEVV 192 (589)
Q Consensus 126 lVl~~Ssl~~--~~~L~~~l~~LGg~vv~~ws~~cTHLV~~~s~r~T~KlL~ALi~gkpIVtp~wl~aL 192 (589)
.++.+.++.. ....++.+.+|||+|..+.+..+..||+ +-....|+--|.-.|.+|.+.++|.++
T Consensus 599 t~V~TGtL~~~sR~eak~~le~lGakv~~SVSkktD~vva--G~~aGSKl~kA~eLgv~i~~E~~~~~l 665 (667)
T COG0272 599 TFVLTGTLEGMSRDEAKALLEALGAKVSGSVSKKTDYVVA--GENAGSKLAKAQELGVKIIDEEEFLAL 665 (667)
T ss_pred EEEEeccCCCCCHHHHHHHHHHcCCEEeceecccccEEEE--cCCCChHHHHHHHcCCeEecHHHHHHh
Confidence 3455555553 3777889999999999998888888888 778888999999999999999987655
No 43
>PRK14351 ligA NAD-dependent DNA ligase LigA; Provisional
Probab=51.79 E-value=41 Score=39.90 Aligned_cols=64 Identities=20% Similarity=0.178 Sum_probs=50.5
Q ss_pred EEeecCccc--chhHHHHHHhcCCeecccccccceEEEEeccccch-hhHHHHHHcCCceechhHHHHH
Q 007803 127 ILFVDSFQV--NAPLQEKVSSIGAFITSKFCQECTHILVQHHMRVK-GELLDAIVAKKPLVDVSWLEVV 192 (589)
Q Consensus 127 Vl~~Ssl~~--~~~L~~~l~~LGg~vv~~ws~~cTHLV~~~s~r~T-~KlL~ALi~gkpIVtp~wl~aL 192 (589)
++++..+.. ...+.+.+.++||.+..+.+..++.||+ +.... .|+-.|--.|.+|++.+-|..+
T Consensus 615 ~v~TG~l~~~~R~~~~~~i~~~Gg~v~~sVs~kt~~Lv~--G~~~g~sKl~kA~~lgi~ii~E~~f~~l 681 (689)
T PRK14351 615 FVFTGSLSGYTRSEAQELVEAHGGNATGSVSGNTDYLVV--GENPGQSKRDDAEANDVPTLDEEEFEEL 681 (689)
T ss_pred EEEccCCCCCCHHHHHHHHHHcCCEEcCCcCCCccEEEE--cCCCChhHHHHHHHCCCeEecHHHHHHH
Confidence 444444543 3788899999999999999999999999 44455 6999999999999998865444
No 44
>PRK07956 ligA NAD-dependent DNA ligase LigA; Validated
Probab=50.97 E-value=43 Score=39.55 Aligned_cols=64 Identities=11% Similarity=0.181 Sum_probs=51.3
Q ss_pred EEeecCccc--chhHHHHHHhcCCeecccccccceEEEEeccccchhhHHHHHHcCCceechhHHHHH
Q 007803 127 ILFVDSFQV--NAPLQEKVSSIGAFITSKFCQECTHILVQHHMRVKGELLDAIVAKKPLVDVSWLEVV 192 (589)
Q Consensus 127 Vl~~Ssl~~--~~~L~~~l~~LGg~vv~~ws~~cTHLV~~~s~r~T~KlL~ALi~gkpIVtp~wl~aL 192 (589)
++++..+.. ...+.+.+.++||+++.+.+..++.||+ +.....|+-.|.-.|.+|++.+-|..+
T Consensus 596 ~v~TG~l~~~~R~e~~~~i~~~G~~v~~sVs~kt~~lv~--G~~~gsK~~kA~~lgI~ii~E~~f~~~ 661 (665)
T PRK07956 596 VVLTGTLEQLSRDEAKEKLEALGAKVSGSVSKKTDLVVA--GEAAGSKLAKAQELGIEVLDEEEFLRL 661 (665)
T ss_pred EEEeCCCCCCCHHHHHHHHHHcCCEEeCcccCCCCEEEE--CCCCChHHHHHHHcCCeEEcHHHHHHH
Confidence 444444532 3788899999999999999989999999 455678999999999999998866544
No 45
>TIGR00575 dnlj DNA ligase, NAD-dependent. The member of this family from Treponema pallidum differs in having three rather than just one copy of the BRCT (BRCA1 C Terminus) domain (pfam00533) at the C-terminus. It is included in the seed.
Probab=49.50 E-value=32 Score=40.46 Aligned_cols=70 Identities=21% Similarity=0.263 Sum_probs=45.7
Q ss_pred ccCcCCcEEEEcCCCc-ccchhhHHHHHHHcCceEEEeeecCCCCCCccccccCeEEEEeCCCChhhHHHHHhhCCCCcc
Q 007803 227 ENCMRGYTFLLDSSMK-YKYGDQLQSLLEVSGAKTLSIESFCPSSQDSECVEHNSVVYVLPRKSEDCSKSILKLSSLSRV 305 (589)
Q Consensus 227 ~~LF~G~TFIf~~~~q-y~~~~~L~~lIe~aGGkvll~e~~~~~~~~~~~g~~~~vVlV~p~~w~~~~~~~~~l~glR~I 305 (589)
...|.|++|+|+..-. ++ .+.+..+|+..||++..- ++..+ -.||+.....-++. .+...|.+.|
T Consensus 582 ~~~l~gk~~v~TG~l~~~~-R~~~~~~i~~~G~~v~~s--Vs~kt----------~~lv~G~~~gsKl~-kA~~lgi~ii 647 (652)
T TIGR00575 582 GSPLAGKTFVLTGTLSQMS-RDEAKELLENLGGKVASS--VSKKT----------DYVIAGEKAGSKLA-KAQELGIPII 647 (652)
T ss_pred CCCccCcEEEEeccCCCCC-HHHHHHHHHHcCCEEeCC--cCCCc----------cEEEECCCCChHHH-HHHHcCCcEe
Confidence 3569999999998754 33 478999999999998521 12221 23444432322443 4455589999
Q ss_pred chhHH
Q 007803 306 NEKDL 310 (589)
Q Consensus 306 ~e~E~ 310 (589)
+|.||
T Consensus 648 ~E~~~ 652 (652)
T TIGR00575 648 NEEEL 652 (652)
T ss_pred chhhC
Confidence 99875
No 46
>KOG0241 consensus Kinesin-like protein [Cytoskeleton]
Probab=48.77 E-value=32 Score=42.01 Aligned_cols=73 Identities=19% Similarity=0.257 Sum_probs=53.1
Q ss_pred EEEccCC-CCeeecCCCcccccceEEEEeecccCCcccCCCCCcccccEEEEECCccceEEeCcCCCceeeeccCCceEE
Q 007803 25 YKVGRKG-CDIIINKDKGVSRVHAEILVDEMISLNPFQDKSSKVSTTRVRIKDCSKYGTFINKNLGSKEKVHEFPNKEAT 103 (589)
Q Consensus 25 YtIGRk~-cdIvI~~D~sISR~HA~I~v~~~~~~~~~~~~~~~~~~~~v~I~DlSknGTfVNg~~~~~ekI~~~~g~~~~ 103 (589)
-+||-.. -+|.+ ..-.|=++||.|.++.. ..+++.-+..--+|||| ..+- .+..
T Consensus 469 tlig~~~~~~i~l-~glgi~p~h~vidI~~d---------------g~l~~~p~~~~R~~VNG-----s~v~----~~t~ 523 (1714)
T KOG0241|consen 469 TLIGLFKSQDIQL-SGLGIQPKHCVIDIESD---------------GELRLTPLLNARSCVNG-----SLVC----STTQ 523 (1714)
T ss_pred eeeccccCcceee-ecCcccCccceeeeccC---------------CcEEecccccceeeecC-----ceec----cccc
Confidence 3455443 78888 67789999999999863 13677777555899999 4443 5778
Q ss_pred ccCCCeEEEccCCcccceec
Q 007803 104 LKDGDLVSFGTGNATYRFCY 123 (589)
Q Consensus 104 L~~GD~I~fG~~~~~frl~~ 123 (589)
|.+||+|-.|.. .-||+..
T Consensus 524 L~~GdRiLwGnn-HFFrvN~ 542 (1714)
T KOG0241|consen 524 LWHGDRILWGNN-HFFRVNL 542 (1714)
T ss_pred cccCceEEeccc-ceEEecC
Confidence 999999999974 3466643
No 47
>KOG0966 consensus ATP-dependent DNA ligase IV [Replication, recombination and repair]
Probab=44.56 E-value=43 Score=40.12 Aligned_cols=58 Identities=17% Similarity=0.143 Sum_probs=48.9
Q ss_pred hhHHHHHHhcCCeecccccccceEEEEeccccchhhHHHHHHcCCceechhHHHHHHh
Q 007803 137 APLQEKVSSIGAFITSKFCQECTHILVQHHMRVKGELLDAIVAKKPLVDVSWLEVVAE 194 (589)
Q Consensus 137 ~~L~~~l~~LGg~vv~~ws~~cTHLV~~~s~r~T~KlL~ALi~gkpIVtp~wl~aLa~ 194 (589)
..|++.+..-||+++.+..+..||.+.-.....|.+-.+|+.+++-||.|+|+.++..
T Consensus 652 ~~le~~ivenGG~iv~nv~p~~~~ci~~a~~et~~vk~~~~~~~cdVl~p~Wlldcc~ 709 (881)
T KOG0966|consen 652 AKLEEIIVENGGKIVQNVGPSDTLCIATAGKETTRVKAQAIKRSCDVLKPAWLLDCCK 709 (881)
T ss_pred HHHHHHHHHcCCEEEEcCCCCCcceEEeccccchHHHHHHHhccCceeeHHHHHHHHh
Confidence 7899999999999999888878888753356777788889999999999999977643
No 48
>cd00027 BRCT Breast Cancer Suppressor Protein (BRCA1), carboxy-terminal domain. The BRCT domain is found within many DNA damage repair and cell cycle checkpoint proteins. The unique diversity of this domain superfamily allows BRCT modules to interact forming homo/hetero BRCT multimers, BRCT-non-BRCT interactions, and interactions within DNA strand breaks.
Probab=42.88 E-value=1.4e+02 Score=22.35 Aligned_cols=31 Identities=32% Similarity=0.531 Sum_probs=22.0
Q ss_pred CcEEEEcCCCcccchhhHHHHHHHcCceEEE
Q 007803 232 GYTFLLDSSMKYKYGDQLQSLLEVSGAKTLS 262 (589)
Q Consensus 232 G~TFIf~~~~qy~~~~~L~~lIe~aGGkvll 262 (589)
|..|++.......-...|..+|+..||++..
T Consensus 1 ~~~~~i~g~~~~~~~~~l~~~i~~~Gg~v~~ 31 (72)
T cd00027 1 GLTFVITGDLPSEERDELKELIEKLGGKVTS 31 (72)
T ss_pred CCEEEEEecCCCcCHHHHHHHHHHcCCEEec
Confidence 5678777654112236899999999998763
No 49
>TIGR00575 dnlj DNA ligase, NAD-dependent. The member of this family from Treponema pallidum differs in having three rather than just one copy of the BRCT (BRCA1 C Terminus) domain (pfam00533) at the C-terminus. It is included in the seed.
Probab=41.11 E-value=49 Score=38.99 Aligned_cols=59 Identities=10% Similarity=0.236 Sum_probs=47.2
Q ss_pred EEeecCccc--chhHHHHHHhcCCeecccccccceEEEEeccccchhhHHHHHHcCCceechh
Q 007803 127 ILFVDSFQV--NAPLQEKVSSIGAFITSKFCQECTHILVQHHMRVKGELLDAIVAKKPLVDVS 187 (589)
Q Consensus 127 Vl~~Ssl~~--~~~L~~~l~~LGg~vv~~ws~~cTHLV~~~s~r~T~KlL~ALi~gkpIVtp~ 187 (589)
++++..+.. ...+.+.+..+||.++.+.+..+++||+ +.....|+--|.-.|.+|++.+
T Consensus 590 ~v~TG~l~~~~R~~~~~~i~~~G~~v~~sVs~kt~~lv~--G~~~gsKl~kA~~lgi~ii~E~ 650 (652)
T TIGR00575 590 FVLTGTLSQMSRDEAKELLENLGGKVASSVSKKTDYVIA--GEKAGSKLAKAQELGIPIINEE 650 (652)
T ss_pred EEEeccCCCCCHHHHHHHHHHcCCEEeCCcCCCccEEEE--CCCCChHHHHHHHcCCcEechh
Confidence 444444442 3788899999999999999999999999 4555679999999999998765
No 50
>KOG1929 consensus Nucleotide excision repair factor NEF2, RAD4/CUT5 component [Replication, recombination and repair]
Probab=39.79 E-value=43 Score=40.41 Aligned_cols=69 Identities=12% Similarity=0.166 Sum_probs=54.8
Q ss_pred cCCeEEeecCccc--chhHHHHHHhcCCeecccccccceEEEEeccccchhhHHHHHHcCCceechhHHHHH
Q 007803 123 YAPLILFVDSFQV--NAPLQEKVSSIGAFITSKFCQECTHILVQHHMRVKGELLDAIVAKKPLVDVSWLEVV 192 (589)
Q Consensus 123 ~~PlVl~~Ssl~~--~~~L~~~l~~LGg~vv~~ws~~cTHLV~~~s~r~T~KlL~ALi~gkpIVtp~wl~aL 192 (589)
+.++++|++++.. +..+...+-..||.+-........||+. ....-|.|.-+|+.-.+|||+.+|+...
T Consensus 104 ~~~~~Vc~tgl~~~eK~ei~~~v~k~gg~~~~~L~s~v~~~~~-~~~~~~~kYe~al~wn~~v~~~~w~~~s 174 (811)
T KOG1929|consen 104 FFGLKVCLTGLSGDEKSEIKILVPKHGGTLHRSLSSDVNSLKI-LPEVKTEKYEQALKWNIPVVSDDWLFDS 174 (811)
T ss_pred ccceEEEecccchHHHHHHHHHhhhcccEEehhhhhhhheeee-ccccchHHHHHHHhhCCccccHHHHhhh
Confidence 4677777776654 3777788889999998877776666666 3566779999999999999999998765
No 51
>KOG2481 consensus Protein required for normal rRNA processing [RNA processing and modification]
Probab=38.27 E-value=20 Score=40.86 Aligned_cols=36 Identities=17% Similarity=0.352 Sum_probs=30.2
Q ss_pred CcCcccCcCCcEEEEcCCCcccchhhHHHHHHHcCceEE
Q 007803 223 VDTLENCMRGYTFLLDSSMKYKYGDQLQSLLEVSGAKTL 261 (589)
Q Consensus 223 ~~~R~~LF~G~TFIf~~~~qy~~~~~L~~lIe~aGGkvl 261 (589)
...-++||+|+.|++-...-. +.|.=+|.++||.|.
T Consensus 321 ~s~~kslF~glkFfl~reVPr---esL~fiI~s~GG~V~ 356 (570)
T KOG2481|consen 321 QSSHKSLFSGLKFFLNREVPR---ESLEFIIRSFGGKVS 356 (570)
T ss_pred hhhHHHHhhcceeeeeccCch---HHHHHHHHHcCCcee
Confidence 345589999999999887754 589999999999986
No 52
>cd01764 Urm1 Urm1-like ubuitin domain. Urm1 (Ubiquitin-Related Modifier1) The Urm1 fold, like those of two closely related proteins MoaD (molybdopterin synthase) and ThiS (sulfur carrier protein), is similar to that of ubiquitin although there is little or no sequence similarity. The C-terminal glycines of Urm1 are conjugated to an E1-like protein Uba4 as part of a novel conjugation system in yeast. The Urm1 fold is found only in eukaryotes.
Probab=34.67 E-value=31 Score=30.48 Aligned_cols=27 Identities=30% Similarity=0.400 Sum_probs=21.7
Q ss_pred eEEeCcCCCceeeeccCCceEEccCCCeEEEc
Q 007803 82 TFINKNLGSKEKVHEFPNKEATLKDGDLVSFG 113 (589)
Q Consensus 82 TfVNg~~~~~ekI~~~~g~~~~L~~GD~I~fG 113 (589)
.+||+ +.+....|..+.|++||.|.|=
T Consensus 62 VlvN~-----~di~~l~g~~t~L~dgD~v~i~ 88 (94)
T cd01764 62 VLIND-----TDWELLGEEDYILEDGDHVVFI 88 (94)
T ss_pred EEECC-----ccccccCCcccCCCCcCEEEEE
Confidence 47899 6666556788999999999874
No 53
>COG5163 NOP7 Protein required for biogenesis of the 60S ribosomal subunit [Translation, ribosomal structure and biogenesis]
Probab=29.68 E-value=38 Score=37.60 Aligned_cols=37 Identities=16% Similarity=0.406 Sum_probs=31.0
Q ss_pred CCcCcccCcCCcEEEEcCCCcccchhhHHHHHHHcCceEE
Q 007803 222 NVDTLENCMRGYTFLLDSSMKYKYGDQLQSLLEVSGAKTL 261 (589)
Q Consensus 222 p~~~R~~LF~G~TFIf~~~~qy~~~~~L~~lIe~aGGkvl 261 (589)
|...-..||.|++|++....-. +.|.-+|.+|||.|.
T Consensus 343 ~~Ss~~slFS~f~FyisreVp~---dsLefiilscGG~V~ 379 (591)
T COG5163 343 PCSSLKSLFSGFKFYISREVPG---DSLEFIILSCGGSVV 379 (591)
T ss_pred cCcchhhhhhceEEEEeccccc---hHHHHHHHHcCCccc
Confidence 4556689999999999887643 589999999999986
No 54
>PLN03122 Poly [ADP-ribose] polymerase; Provisional
Probab=26.07 E-value=2.1e+02 Score=34.86 Aligned_cols=77 Identities=14% Similarity=0.072 Sum_probs=50.5
Q ss_pred ccCcCCcEEEEcCCCcccchhhHHHHHHHcCceEEEeeecCCCCCCccccccCeEEEEeCCCC--h--hhHHHHHhhCCC
Q 007803 227 ENCMRGYTFLLDSSMKYKYGDQLQSLLEVSGAKTLSIESFCPSSQDSECVEHNSVVYVLPRKS--E--DCSKSILKLSSL 302 (589)
Q Consensus 227 ~~LF~G~TFIf~~~~qy~~~~~L~~lIe~aGGkvll~e~~~~~~~~~~~g~~~~vVlV~p~~w--~--~~~~~~~~l~gl 302 (589)
...|.|++|+|...... ..+.++.+|+..||++..- +. ..--+++...+. . ..+ .-++..|.
T Consensus 187 ~kpL~G~~fviTGtl~~-sr~elK~~Ie~~GGkvsss--------Vs----~~T~lIvt~~ev~k~gsSKl-kkAk~lgI 252 (815)
T PLN03122 187 GKPFSGMMISLSGRLSR-THQYWKKDIEKHGGKVANS--------VE----GVTCLVVSPAERERGGSSKI-AEAMERGI 252 (815)
T ss_pred CCCcCCcEEEEeCCCCC-CHHHHHHHHHHcCCEEccc--------cc----cceEEEEcCccccccCccHH-HHHHHcCC
Confidence 34599999999887543 3468999999999997521 11 111223333221 1 234 44555699
Q ss_pred CccchhHHHHHHHhC
Q 007803 303 SRVNEKDLICAVLSG 317 (589)
Q Consensus 303 R~I~e~E~l~AIL~~ 317 (589)
+.|++.+|++-+-.+
T Consensus 253 pIVsEd~L~d~i~~~ 267 (815)
T PLN03122 253 PVVREAWLIDSIEKQ 267 (815)
T ss_pred cCccHHHHHHHHhcC
Confidence 999999999877765
No 55
>PRK01777 hypothetical protein; Validated
Probab=25.41 E-value=58 Score=29.04 Aligned_cols=29 Identities=28% Similarity=0.250 Sum_probs=22.9
Q ss_pred ECCccceEEeCcCCCceeeeccCCceEEccCCCeEEEc
Q 007803 76 DCSKYGTFINKNLGSKEKVHEFPNKEATLKDGDLVSFG 113 (589)
Q Consensus 76 DlSknGTfVNg~~~~~ekI~~~~g~~~~L~~GD~I~fG 113 (589)
|++.+-..||| +.+. ....|++||+|.|=
T Consensus 46 ~~~~~~vgI~G-----k~v~----~d~~L~dGDRVeIy 74 (95)
T PRK01777 46 DLAKNKVGIYS-----RPAK----LTDVLRDGDRVEIY 74 (95)
T ss_pred ccccceEEEeC-----eECC----CCCcCCCCCEEEEe
Confidence 56777888999 6664 57899999998764
Done!