Query 007803
Match_columns 589
No_of_seqs 268 out of 917
Neff 5.2
Searched_HMMs 29240
Date Mon Mar 25 10:53:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007803.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/007803hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3huf_A DNA repair and telomere 100.0 1.3E-45 4.4E-50 379.6 11.6 238 2-261 1-252 (325)
2 4h87_A Kanadaptin; FHA domain 99.7 6E-18 2.1E-22 154.9 9.7 106 3-121 21-128 (130)
3 1uht_A Expressed protein; FHA 99.7 9E-17 3.1E-21 143.7 9.8 100 2-125 12-115 (118)
4 3gqs_A Adenylate cyclase-like 99.7 3.3E-16 1.1E-20 137.7 11.4 89 2-115 4-95 (106)
5 2pie_A E3 ubiquitin-protein li 99.7 5E-16 1.7E-20 143.0 11.6 90 1-115 8-103 (138)
6 2csw_A Ubiquitin ligase protei 99.6 4.3E-16 1.5E-20 144.6 10.2 99 1-124 16-123 (145)
7 2jpe_A Nuclear inhibitor of pr 99.6 7.7E-17 2.6E-21 148.6 4.2 88 16-125 47-138 (140)
8 3els_A PRE-mRNA leakage protei 99.6 4.5E-16 1.5E-20 147.0 9.2 102 2-123 31-155 (158)
9 3po8_A RV0020C protein, putati 99.6 6.9E-16 2.4E-20 134.2 9.3 85 13-126 13-99 (100)
10 3sqd_A PAX-interacting protein 99.6 5.8E-16 2E-20 152.9 9.5 190 125-323 16-215 (219)
11 3va4_A Mediator of DNA damage 99.6 1.1E-15 3.8E-20 140.2 10.7 88 14-121 36-125 (132)
12 1l0b_A BRCA1; TANDEM-BRCT, thr 99.6 5.8E-15 2E-19 144.5 15.5 187 124-319 6-204 (229)
13 2xt9_B Putative signal transdu 99.6 2.1E-15 7.3E-20 134.5 11.1 85 2-114 11-97 (115)
14 2jqj_A DNA damage response pro 99.6 1.4E-15 4.9E-20 141.9 10.1 101 4-123 20-121 (151)
15 2etx_A Mediator of DNA damage 99.6 1.7E-15 5.7E-20 147.8 10.8 179 127-322 14-197 (209)
16 1dmz_A Protein (protein kinase 99.6 2.4E-15 8.3E-20 141.7 11.5 111 4-123 7-124 (158)
17 1lgp_A Cell cycle checkpoint p 99.6 1.2E-15 4.1E-20 135.9 8.7 92 2-115 3-96 (116)
18 1mzk_A Kinase associated prote 99.6 2.4E-15 8.3E-20 138.6 10.8 95 1-115 6-112 (139)
19 2kb3_A Oxoglutarate dehydrogen 99.6 2.4E-15 8.1E-20 139.8 10.5 85 2-114 46-132 (143)
20 1gxc_A CHK2, CDS1, serine/thre 99.6 3.9E-15 1.3E-19 138.8 11.5 92 2-115 29-131 (149)
21 2k2w_A Recombination and DNA r 99.6 3.3E-16 1.1E-20 140.3 4.0 94 225-321 9-112 (118)
22 3elv_A PRE-mRNA leakage protei 99.6 2.1E-15 7.3E-20 147.7 9.6 102 2-123 78-202 (205)
23 2kfu_A RV1827 PThr 22; FHA dom 99.6 5.4E-15 1.8E-19 140.2 10.2 85 2-114 55-141 (162)
24 1r21_A Antigen KI-67; beta san 99.6 2.9E-15 9.9E-20 135.9 7.8 81 15-123 25-107 (128)
25 3l41_A BRCT-containing protein 99.6 1.4E-15 4.8E-20 150.6 6.1 190 127-327 10-214 (220)
26 1qu5_A Protein kinase SPK1; FH 99.5 3.8E-15 1.3E-19 143.7 6.9 111 4-123 31-148 (182)
27 1t15_A Breast cancer type 1 su 99.5 4.3E-14 1.5E-18 136.3 12.4 185 125-319 4-202 (214)
28 3oun_A Putative uncharacterize 99.5 2.3E-14 7.9E-19 135.3 10.1 76 13-115 75-152 (157)
29 3hx1_A SLR1951 protein; P74513 99.5 3.6E-14 1.2E-18 129.8 10.7 80 14-115 21-107 (131)
30 3al2_A DNA topoisomerase 2-bin 99.5 2.7E-14 9.2E-19 142.5 9.6 180 125-318 9-219 (235)
31 1g3g_A Protien kinase SPK1; FH 99.5 4.7E-14 1.6E-18 133.6 10.7 91 2-116 33-136 (164)
32 1wln_A Afadin; beta sandwich, 99.5 1E-13 3.4E-18 124.6 10.1 81 15-122 28-112 (120)
33 1g6g_A Protein kinase RAD53; b 99.5 1.3E-13 4.4E-18 125.1 10.3 70 24-116 37-108 (127)
34 2nte_A BARD-1, BRCA1-associate 99.5 7.4E-14 2.5E-18 135.5 9.3 134 125-264 2-139 (210)
35 4ejq_A Kinesin-like protein KI 99.5 1.9E-13 6.4E-18 128.4 11.1 91 9-122 47-142 (154)
36 3u3z_A Microcephalin; DNA repa 99.4 3.1E-13 1.1E-17 131.4 8.8 169 125-318 11-188 (199)
37 1kzy_C Tumor suppressor P53-bi 99.4 5.1E-12 1.7E-16 127.6 16.5 175 137-318 61-242 (259)
38 3fm8_A Kinesin-like protein KI 99.4 1E-12 3.4E-17 119.6 10.1 83 13-122 39-122 (124)
39 2ff4_A Probable regulatory pro 99.4 8E-13 2.7E-17 139.9 10.3 80 15-122 298-379 (388)
40 3kt9_A Aprataxin; FHA domain, 99.2 3.7E-11 1.3E-15 105.9 10.4 98 1-124 1-101 (102)
41 3uv0_A Mutator 2, isoform B; F 99.1 6.6E-11 2.2E-15 103.5 7.5 82 12-121 10-99 (102)
42 3i6u_A CDS1, serine/threonine- 99.0 4.5E-10 1.6E-14 118.6 9.7 92 3-116 10-112 (419)
43 4egx_A Kinesin-like protein KI 98.9 4.8E-09 1.7E-13 101.2 10.8 92 9-122 77-172 (184)
44 3olc_X DNA topoisomerase 2-bin 98.8 2.2E-08 7.5E-13 103.1 14.0 173 118-318 101-275 (298)
45 2brf_A Bifunctional polynucleo 98.8 1.4E-08 4.8E-13 90.5 9.1 87 14-123 18-106 (110)
46 1yj5_C 5' polynucleotide kinas 98.7 4E-08 1.4E-12 90.9 9.5 88 16-126 21-109 (143)
47 2vxb_A DNA repair protein RHP9 98.7 1E-07 3.5E-12 95.2 12.2 164 136-318 21-237 (241)
48 1ujx_A Polynucleotide kinase 3 98.6 2.4E-08 8.4E-13 90.1 5.9 81 22-125 35-115 (119)
49 4a0e_A YSCD, type III secretio 98.6 1.2E-07 3.9E-12 86.1 8.0 84 3-114 5-90 (123)
50 3l3e_A DNA topoisomerase 2-bin 98.3 1.3E-06 4.5E-11 76.2 8.0 71 137-210 32-103 (107)
51 3t7k_A RTT107, regulator of TY 98.3 1E-06 3.5E-11 88.4 6.7 132 126-262 24-170 (256)
52 2d8m_A DNA-repair protein XRCC 98.2 7.6E-06 2.6E-10 74.0 10.3 83 124-211 24-108 (129)
53 2cou_A ECT2 protein; BRCT doma 98.1 1.3E-06 4.4E-11 77.1 3.0 88 119-211 8-98 (109)
54 3l46_A Protein ECT2; alternati 98.0 1.9E-06 6.3E-11 77.0 3.3 86 118-208 16-104 (112)
55 1wv3_A Similar to DNA segregat 98.0 1E-05 3.5E-10 80.8 7.4 81 20-128 89-173 (238)
56 4id3_A DNA repair protein REV1 97.8 3.7E-05 1.3E-09 64.3 7.6 65 137-208 24-90 (92)
57 1wf6_A Similar to S.pombe -RAD 97.8 4.7E-05 1.6E-09 69.1 7.9 85 123-211 41-128 (132)
58 3pa6_A Microcephalin; BRCT dom 97.8 5.7E-05 2E-09 66.7 7.7 70 137-211 28-97 (107)
59 2ebw_A DNA repair protein REV1 97.6 0.0001 3.6E-09 62.6 7.1 69 124-196 14-85 (97)
60 3ef0_A RNA polymerase II subun 97.5 0.00019 6.7E-09 76.0 8.2 57 137-195 303-360 (372)
61 3ef1_A RNA polymerase II subun 97.5 0.00019 6.4E-09 77.8 8.0 58 137-196 373-431 (442)
62 3ii6_X DNA ligase 4; XRCC4, NH 97.4 0.0012 4.1E-08 66.4 13.3 56 137-195 28-84 (263)
63 3olc_X DNA topoisomerase 2-bin 97.3 0.0004 1.4E-08 71.3 7.8 83 124-211 201-286 (298)
64 1z56_C DNA ligase IV; DNA repa 97.2 0.00015 5.2E-09 72.3 3.2 117 136-261 28-192 (264)
65 3pc6_A DNA repair protein XRCC 95.7 0.028 9.7E-07 49.3 7.8 70 125-196 10-84 (104)
66 1l7b_A DNA ligase; BRCT, autos 95.7 0.014 4.7E-07 50.1 5.6 56 136-193 23-78 (92)
67 2cok_A Poly [ADP-ribose] polym 95.3 0.025 8.5E-07 50.4 5.9 59 136-194 26-85 (113)
68 2jw5_A DNA polymerase lambda; 95.1 0.036 1.2E-06 48.5 6.4 59 137-195 30-92 (106)
69 2k6g_A Replication factor C su 95.0 0.067 2.3E-06 47.2 7.9 67 127-194 38-106 (109)
70 2ebu_A Replication factor C su 94.7 0.1 3.5E-06 46.4 8.3 59 136-195 39-97 (112)
71 2coe_A Deoxynucleotidyltransfe 94.0 0.26 9.1E-06 44.3 9.5 57 137-196 39-103 (120)
72 3ii6_X DNA ligase 4; XRCC4, NH 93.4 0.13 4.4E-06 51.6 7.0 67 138-208 192-262 (263)
73 1z56_C DNA ligase IV; DNA repa 93.2 0.046 1.6E-06 54.2 3.3 70 137-210 178-262 (264)
74 2dun_A POL MU, DNA polymerase 92.9 0.3 1E-05 44.7 8.0 77 118-196 6-96 (133)
75 2ep8_A Pescadillo homolog 1; A 92.7 0.22 7.4E-06 43.2 6.5 68 123-196 13-91 (100)
76 2ebu_A Replication factor C su 91.2 0.7 2.4E-05 40.9 8.2 77 227-316 20-97 (112)
77 2k6g_A Replication factor C su 90.9 0.59 2E-05 41.1 7.3 77 227-316 30-107 (109)
78 2d8m_A DNA-repair protein XRCC 90.5 0.97 3.3E-05 40.3 8.5 107 227-357 20-126 (129)
79 1l7b_A DNA ligase; BRCT, autos 90.4 0.46 1.6E-05 40.5 6.0 75 227-315 5-79 (92)
80 3pc7_A DNA ligase 3; DNA repai 88.4 0.46 1.6E-05 40.5 4.5 50 137-196 32-82 (88)
81 2ep8_A Pescadillo homolog 1; A 83.1 0.8 2.8E-05 39.6 3.4 34 225-261 8-41 (100)
82 4id3_A DNA repair protein REV1 82.0 1.4 4.8E-05 36.0 4.4 81 224-318 2-82 (92)
83 1l0b_A BRCA1; TANDEM-BRCT, thr 81.3 1.4 4.9E-05 42.1 4.9 71 137-210 135-213 (229)
84 3u3z_A Microcephalin; DNA repa 80.3 1.5 5.2E-05 41.9 4.6 61 137-209 137-197 (199)
85 1kzy_C Tumor suppressor P53-bi 75.8 5.8 0.0002 39.4 7.5 59 137-195 173-240 (259)
86 4gns_A Chitin biosynthesis pro 75.6 4.8 0.00016 38.6 6.3 56 138-193 182-240 (290)
87 3l3e_A DNA topoisomerase 2-bin 70.7 14 0.00048 31.3 7.7 82 224-318 10-93 (107)
88 3pc6_A DNA repair protein XRCC 69.5 15 0.0005 31.9 7.6 80 227-318 5-85 (104)
89 1t15_A Breast cancer type 1 su 68.0 5.6 0.00019 37.3 5.1 70 137-209 133-210 (214)
90 2ebw_A DNA repair protein REV1 66.8 7 0.00024 32.4 4.9 80 224-318 7-86 (97)
91 2cok_A Poly [ADP-ribose] polym 66.8 5.7 0.00019 35.1 4.4 75 227-316 8-85 (113)
92 2vxb_A DNA repair protein RHP9 62.1 5.7 0.0002 39.1 4.0 105 228-339 1-122 (241)
93 1dgs_A DNA ligase; AMP complex 62.1 1.6 5.6E-05 49.5 0.0 57 136-194 603-659 (667)
94 2etx_A Mediator of DNA damage 61.5 17 0.0006 34.4 7.2 67 137-208 132-200 (209)
95 1wf6_A Similar to S.pombe -RAD 59.9 8.3 0.00028 34.3 4.3 82 224-319 35-118 (132)
96 2l42_A DNA-binding protein RAP 57.6 5.7 0.00019 34.7 2.6 61 137-210 33-95 (106)
97 2owo_A DNA ligase; protein-DNA 54.5 2.6 8.9E-05 47.9 0.0 55 137-193 615-669 (671)
98 3pc7_A DNA ligase 3; DNA repai 53.4 6.2 0.00021 33.5 2.1 37 224-262 11-47 (88)
99 2nte_A BARD-1, BRCA1-associate 50.9 7.9 0.00027 36.6 2.7 57 137-195 122-202 (210)
100 3al2_A DNA topoisomerase 2-bin 42.7 25 0.00085 34.4 4.9 68 137-208 151-227 (235)
101 2ket_A Cathelicidin-6; antimic 38.5 3.7 0.00013 26.8 -1.2 8 511-518 2-9 (27)
102 3qbz_A DDK kinase regulatory s 35.2 39 0.0013 31.7 4.6 27 138-164 89-115 (160)
103 3sqd_A PAX-interacting protein 33.1 89 0.003 30.0 7.1 58 137-195 139-209 (219)
104 1dgs_A DNA ligase; AMP complex 29.4 11 0.00039 42.7 0.0 76 227-316 585-660 (667)
105 3oq4_A DBF4, protein DNA52; DD 28.4 38 0.0013 30.9 3.2 53 137-189 33-91 (134)
106 2owo_A DNA ligase; protein-DNA 27.5 13 0.00044 42.2 0.0 75 227-314 595-669 (671)
107 2k9x_A Tburm1, uncharacterized 27.0 20 0.00068 31.4 1.1 26 82-112 70-95 (110)
108 3oq0_A DBF4, protein DNA52; DD 24.8 44 0.0015 31.1 3.0 54 137-190 50-109 (151)
109 3ef0_A RNA polymerase II subun 22.6 1.8E+02 0.0061 30.4 7.6 82 224-317 277-361 (372)
110 1wgk_A Riken cDNA 2900073H19 p 22.0 23 0.00078 31.1 0.5 26 82-112 76-101 (114)
No 1
>3huf_A DNA repair and telomere maintenance protein NBS1; NBS1, FHA domain, BRCT domain, phosphoprotein binding, phosp binding, DNA repair; HET: DNA TPO; 2.15A {Schizosaccharomyces pombe} PDB: 3hue_A* 3i0m_A* 3i0n_A*
Probab=100.00 E-value=1.3e-45 Score=379.55 Aligned_cols=238 Identities=17% Similarity=0.271 Sum_probs=195.1
Q ss_pred eeEEeeCCCCCCCCeEEEecCCeEEEccCCCC----eeecCCCcccccceEEEEeecccCCcccCCCCCcccccEEEEEC
Q 007803 2 VWGLFPIDPLPGEDKYYIFSKGNYKVGRKGCD----IIINKDKGVSRVHAEILVDEMISLNPFQDKSSKVSTTRVRIKDC 77 (589)
Q Consensus 2 MW~L~~~~~~~G~~~~~Ll~g~~YtIGRk~cd----IvI~~D~sISR~HA~I~v~~~~~~~~~~~~~~~~~~~~v~I~Dl 77 (589)
||+|++.+++.+|+++||.++. |+|||+.|+ |++ +|++|||+||+|.+..+..+++. +..++.++|+|+
T Consensus 1 MWiL~~~~d~~~Gkr~~L~pg~-YlIGR~~~~~~~lI~i-dD~SISRqHA~I~v~~v~~~dg~-----~~~~~~l~I~DL 73 (325)
T 3huf_A 1 MWIIEAEGDILKGKSRILFPGT-YIVGRNVSDDSSHIQV-ISKSISKRHARFTILTPSEKDYF-----TGGPCEFEVKDL 73 (325)
T ss_dssp CEEEEESTTTTTTCCEEECSEE-EEEESSCCCBTTEEEC-CCTTSCSSCEEEEECCCCHHHHH-----HCCCCCEEEEEC
T ss_pred CcEEeccCccCCCeEEEecCCe-EEECCCCCccCceeec-CCCCccccceEEEEecccccccc-----cCCcceEEEEEC
Confidence 9999998655577999999988 999999853 466 99999999999999865333221 134568999999
Q ss_pred -CccceEEeCcCCCceeeeccCCceEEc-cCCCeEEEccCCcccceecCCeEEeecCcccchhHHHHHHhcCCeecccc-
Q 007803 78 -SKYGTFINKNLGSKEKVHEFPNKEATL-KDGDLVSFGTGNATYRFCYAPLILFVDSFQVNAPLQEKVSSIGAFITSKF- 154 (589)
Q Consensus 78 -SknGTfVNg~~~~~ekI~~~~g~~~~L-~~GD~I~fG~~~~~frl~~~PlVl~~Ssl~~~~~L~~~l~~LGg~vv~~w- 154 (589)
||||||||| ++|. +....| .+||+|+||.+...|||+|+|+|+++++.+....|++.+.+|||+++ +|
T Consensus 74 gSknGTfVNG-----erI~---~~~~~L~~dgd~I~fG~~~~~fRl~W~P~Vl~~Sske~~~~L~~~L~~LGik~v-~~~ 144 (325)
T 3huf_A 74 DTKFGTKVNE-----KVVG---QNGDSYKEKDLKIQLGKCPFTINAYWRSMCIQFDNPEMLSQWASNLNLLGIPTG-LRD 144 (325)
T ss_dssp SCSSCEEETT-----EECC---TTCEEECSSEEEEEETTCSSCEEEEECCCCEEESCHHHHHHHHHHHHTTTCCEE-SSC
T ss_pred CCCCCEEECC-----EECC---CceeeecCCCCEEEecCCcceEEEEEeeeEEEecCHHHHHHHHHHHHHcCCEEE-Ecc
Confidence 999999999 8886 555666 48999999999999999999999999754444569999999999999 99
Q ss_pred cccceEEEEec--cccchhhHHHHHHcCCceechhHHHHHH--hccC---CCCCCCCCCCCCCCccCCCCccccCCcCcc
Q 007803 155 CQECTHILVQH--HMRVKGELLDAIVAKKPLVDVSWLEVVA--EKSI---RTDFPGCNSHVTTLIMEGDPVELANVDTLE 227 (589)
Q Consensus 155 s~~cTHLV~~~--s~r~T~KlL~ALi~gkpIVtp~wl~aLa--~~~~---~~elPd~~dflPpl~ie~~~~~l~p~~~R~ 227 (589)
+++||||||.. ..++|+|+|+||++|||||+++||++++ +.++ ..+||++++|+|+++...+++. .|.+.=.
T Consensus 145 ~detTHlVm~krnT~KvTvK~L~ALI~gkPIV~~~Fl~al~~~e~~~~~~~~~wPdp~dflP~i~~g~Ep~~-~~~~~~~ 223 (325)
T 3huf_A 145 SDATTHFVMNRQAGSSITVGTMYAFLKKTVIIDDSYLQYLSTVKESVIEDASLMPDALECFKNIIKNNDQFP-SSPEDCI 223 (325)
T ss_dssp CTTCCEEECCCCCSSCCCHHHHHHHHTTCEEECHHHHHHHTTCTTCCCCTTSSHHHHHHHHHHHHTTCTTCC-SCHHHHT
T ss_pred CCCEEEEEEeccccccchHHHHHHHHCCCcEecHHHHHHHHHhhhhhhhcccCCCChHHcCCCCCCCCCCCC-CCHHHhh
Confidence 77899999941 4567888999999999999999999996 4455 6799999999999754333332 2334447
Q ss_pred cCcCCcEEEEcCCCcccchhhHHHHHHHcCceEE
Q 007803 228 NCMRGYTFLLDSSMKYKYGDQLQSLLEVSGAKTL 261 (589)
Q Consensus 228 ~LF~G~TFIf~~~~qy~~~~~L~~lIe~aGGkvl 261 (589)
+-|+||+|+|++... .+..++++.|-.+-
T Consensus 224 ~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~ 252 (325)
T 3huf_A 224 NSLEGFSCAMLNTSS-----ESHHLLELLGLRIS 252 (325)
T ss_dssp TTTTTCEEEEETCCH-----HHHHHHHHTTCEEE
T ss_pred cccCceEEEEEcCch-----hhhHHHHHhcceee
Confidence 889999999999875 78999999997654
No 2
>4h87_A Kanadaptin; FHA domain of PF00498, mRNA processing, nucleus, structural joint center for structural genomics, JCSG, protein structu initiative; HET: SO4; 1.55A {Homo sapiens}
Probab=99.73 E-value=6e-18 Score=154.85 Aligned_cols=106 Identities=21% Similarity=0.280 Sum_probs=74.7
Q ss_pred eEEeeCCCCCCCCeEEEecCCeEEEccCC-CCeeecCCCcccccceEEEEeecccCCcccCCCCCcccccEEEEEC-Ccc
Q 007803 3 WGLFPIDPLPGEDKYYIFSKGNYKVGRKG-CDIIINKDKGVSRVHAEILVDEMISLNPFQDKSSKVSTTRVRIKDC-SKY 80 (589)
Q Consensus 3 W~L~~~~~~~G~~~~~Ll~g~~YtIGRk~-cdIvI~~D~sISR~HA~I~v~~~~~~~~~~~~~~~~~~~~v~I~Dl-Skn 80 (589)
|.|+...+....+++.|.....|+|||.. |||+| +|++|||+||.|.+......... ......|+|+|| |+|
T Consensus 21 ~~L~v~k~g~~~~~~~L~~~~~~~IGR~~~~di~l-~~~~VSr~HA~I~~r~~~~~~~~-----~~~~~~~~l~Dl~StN 94 (130)
T 4h87_A 21 YSLETLKGGTILGTRSLKGTSYCLFGRLSGCDVCL-EHPSVSRYHAVLQHRASGPDGEC-----DSNGPGFYLYDLGSTH 94 (130)
T ss_dssp CEEEEEETTEEEEEEECTTCSEEEEESSTTSSEEC-CCTTSCSSCEEEEEBCCCCCC-----------CCEEEEECSCSS
T ss_pred EEEEEEECCeeeeeEEeCCCceEEEcCCcCCCEEe-CCCCcchhcEEEEEecccCccce-----eccCCcceEeeCCCCC
Confidence 66665431111123444445679999987 99999 79999999999988643211100 012236999999 999
Q ss_pred ceEEeCcCCCceeeeccCCceEEccCCCeEEEccCCcccce
Q 007803 81 GTFINKNLGSKEKVHEFPNKEATLKDGDLVSFGTGNATYRF 121 (589)
Q Consensus 81 GTfVNg~~~~~ekI~~~~g~~~~L~~GD~I~fG~~~~~frl 121 (589)
|||||| ++|. ++.++.|++||+|+||.....|.|
T Consensus 95 GT~vNg-----~ri~--~~~~~~L~~GD~I~~G~str~yvl 128 (130)
T 4h87_A 95 GTFLNK-----TRIP--PRTYCRVHVGHVVRFGGSTRLFIL 128 (130)
T ss_dssp CEEETT-----EECC--TTCCEECCTTCEEEETTCSEEEEE
T ss_pred ceEECC-----EECC--CCceeECCCCCEEEECCceEEEEE
Confidence 999999 8886 577899999999999986655544
No 3
>1uht_A Expressed protein; FHA domain, beta-sandwich, antiparallel beta-sheets, phosphopeptide binding motif, structural genomics; NMR {Arabidopsis thaliana} SCOP: b.26.1.2
Probab=99.68 E-value=9e-17 Score=143.73 Aligned_cols=100 Identities=28% Similarity=0.378 Sum_probs=78.6
Q ss_pred eeEEeeCCCCCCCCeEEEecCCeEEEccC-C-CCeeecCCCcccccceEEEEeecccCCcccCCCCCcccccEEEEEC-C
Q 007803 2 VWGLFPIDPLPGEDKYYIFSKGNYKVGRK-G-CDIIINKDKGVSRVHAEILVDEMISLNPFQDKSSKVSTTRVRIKDC-S 78 (589)
Q Consensus 2 MW~L~~~~~~~G~~~~~Ll~g~~YtIGRk-~-cdIvI~~D~sISR~HA~I~v~~~~~~~~~~~~~~~~~~~~v~I~Dl-S 78 (589)
+|.|........+..+.|..+..|+|||. . |||+| +|+.|||.||+|.++.. .|+|+|+ |
T Consensus 12 ~l~L~v~~g~~~g~~~~l~~~~~~~iGR~~~~~di~l-~d~~vSr~Ha~i~~~~~----------------~~~l~Dl~S 74 (118)
T 1uht_A 12 SLRLVFVKGPREGDALDYKPGSTIRVGRIVRGNEIAI-KDAGISTKHLRIESDSG----------------NWVIQDLGS 74 (118)
T ss_dssp EEEEEESSSTTTTCBCCBCTTCCEEEESSSTTCSEEC-CSSSSCTTCEEEEECSS----------------SEEEECCCC
T ss_pred eEEEEEEeCCCCCcEEEECCCCEEEEcCCCCCCCEEe-CCCCCchHHeEEEEECC----------------EEEEEECCC
Confidence 56776654322334555555678999998 4 99999 79999999999998652 5999999 9
Q ss_pred ccceEEeCcCCCceeeeccCCceEEccCCCeEEEccCC-cccceecCC
Q 007803 79 KYGTFINKNLGSKEKVHEFPNKEATLKDGDLVSFGTGN-ATYRFCYAP 125 (589)
Q Consensus 79 knGTfVNg~~~~~ekI~~~~g~~~~L~~GD~I~fG~~~-~~frl~~~P 125 (589)
+||||||+ +++. ++.++.|++||+|+||... ..+++.|.|
T Consensus 75 ~nGT~vng-----~~l~--~~~~~~L~~gd~i~lG~~~~~~~~~~~~p 115 (118)
T 1uht_A 75 SNGTLLNS-----NALD--PETSVNLGDGDVIKLGEYTSILVNFVSGP 115 (118)
T ss_dssp SSCCEESS-----SBCC--TTCEEECCTTEEEEETTTEEEEEEEECSS
T ss_pred CCCeEECC-----EECC--CCCeEEcCCCCEEEECCeEEEEEEEecCC
Confidence 99999999 7775 4678999999999999765 345666655
No 4
>3gqs_A Adenylate cyclase-like protein; FHA domain, structural genomics, PSI-2, protein structure in midwest center for structural genomics, MCSG; 2.20A {Chlamydia trachomatis}
Probab=99.66 E-value=3.3e-16 Score=137.66 Aligned_cols=89 Identities=28% Similarity=0.414 Sum_probs=73.6
Q ss_pred eeEEeeCCCCCCCCeEEEecCCeEEEccCC--CCeeecCCCcccccceEEEEeecccCCcccCCCCCcccccEEEEEC-C
Q 007803 2 VWGLFPIDPLPGEDKYYIFSKGNYKVGRKG--CDIIINKDKGVSRVHAEILVDEMISLNPFQDKSSKVSTTRVRIKDC-S 78 (589)
Q Consensus 2 MW~L~~~~~~~G~~~~~Ll~g~~YtIGRk~--cdIvI~~D~sISR~HA~I~v~~~~~~~~~~~~~~~~~~~~v~I~Dl-S 78 (589)
+|.|........+..+.|..+..|+|||.. |||+| +|++|||.||.|.+... ..|+|+|+ |
T Consensus 4 ~~~L~v~~G~~~g~~~~l~~~~~~~iGR~~~~~di~l-~d~~vSr~Ha~i~~~~~---------------~~~~l~Dl~S 67 (106)
T 3gqs_A 4 RFLLKVLAGANIGAEFHLDSGKTYIVGSDPQVADIVL-SDMSISRQHAKIIIGND---------------NSVLIEDLGS 67 (106)
T ss_dssp EEEEEECC-CCTTCEEEECTTCEEEEESCTTTCSEEC-CCTTSCSSCEEEEECTT---------------SCEEEEECSC
T ss_pred eEEEEEEeCCCCcEEEEECCCCEEEEeECCCcCCEEe-CCCCcchhhcEEEECCC---------------CcEEEEECcC
Confidence 698987764334466666667789999985 99999 78999999999999731 15999999 9
Q ss_pred ccceEEeCcCCCceeeeccCCceEEccCCCeEEEccC
Q 007803 79 KYGTFINKNLGSKEKVHEFPNKEATLKDGDLVSFGTG 115 (589)
Q Consensus 79 knGTfVNg~~~~~ekI~~~~g~~~~L~~GD~I~fG~~ 115 (589)
+||||||+ +++. .++.|++||+|+||..
T Consensus 68 ~nGt~vng-----~~i~----~~~~L~~Gd~i~~G~~ 95 (106)
T 3gqs_A 68 KNGVIVEG-----RKIE----HQSTLSANQVVALGTT 95 (106)
T ss_dssp SSCCEETT-----EECS----SEEECCTTCCEEETTE
T ss_pred CCCeEECC-----EECC----CCeECCCCCEEEECCE
Confidence 99999999 8886 4689999999999964
No 5
>2pie_A E3 ubiquitin-protein ligase RNF8; FHA domain, complex, ligase, signaling protein; HET: TPO; 1.35A {Homo sapiens} SCOP: b.26.1.2
Probab=99.65 E-value=5e-16 Score=142.96 Aligned_cols=90 Identities=20% Similarity=0.289 Sum_probs=75.6
Q ss_pred CeeEEeeCCCCCCCCeEEEecCCeEEEccCC-CCeeecCCCc----ccccceEEEEeecccCCcccCCCCCcccccEEEE
Q 007803 1 MVWGLFPIDPLPGEDKYYIFSKGNYKVGRKG-CDIIINKDKG----VSRVHAEILVDEMISLNPFQDKSSKVSTTRVRIK 75 (589)
Q Consensus 1 mMW~L~~~~~~~G~~~~~Ll~g~~YtIGRk~-cdIvI~~D~s----ISR~HA~I~v~~~~~~~~~~~~~~~~~~~~v~I~ 75 (589)
+.|+|...+. ....+.|..+..++|||.. |||+| +++. |||.||.|.+... ..|+|+
T Consensus 8 ~~w~l~~~G~--~~~~~~l~~~~~~~IGR~~~~di~l-~~~~~~~~VSr~Ha~i~~~~~---------------g~~~l~ 69 (138)
T 2pie_A 8 RSWCLRRVGM--SAGWLLLEDGCEVTVGRGFGVTYQL-VSKICPLMISRNHCVLKQNPE---------------GQWTIM 69 (138)
T ss_dssp EEEEEEETTC--SSCBEEECTTCCEEEESSSSSSEEC-CCSSCTTSSCSSCEEEEECTT---------------SCEEEE
T ss_pred ccEEEEEeCC--CCCEEEecCCCeEEECCCCCCCEEe-CCCCcCCCCChhHeEEEEcCC---------------CcEEEE
Confidence 4699988763 3357777778999999997 99999 6777 9999999999531 159999
Q ss_pred EC-CccceEEeCcCCCceeeeccCCceEEccCCCeEEEccC
Q 007803 76 DC-SKYGTFINKNLGSKEKVHEFPNKEATLKDGDLVSFGTG 115 (589)
Q Consensus 76 Dl-SknGTfVNg~~~~~ekI~~~~g~~~~L~~GD~I~fG~~ 115 (589)
|+ |+||||||+ +++. ++.++.|++||+|+||..
T Consensus 70 Dl~S~NGT~vNg-----~~l~--~~~~~~L~~GD~I~lG~~ 103 (138)
T 2pie_A 70 DNKSLNGVWLNR-----ARLE--PLRVYSIHQGDYIQLGVP 103 (138)
T ss_dssp ECSCSSCEEETT-----EECC--TTCCEECCTTCEEEESCC
T ss_pred ECCCCCCeEECC-----EEcC--CCCcEECCCCCEEEECCC
Confidence 99 999999999 8886 467899999999999973
No 6
>2csw_A Ubiquitin ligase protein RNF8; 11-stranded beta sandwich, ring finger protein 8, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.26.1.2
Probab=99.64 E-value=4.3e-16 Score=144.61 Aligned_cols=99 Identities=19% Similarity=0.282 Sum_probs=79.1
Q ss_pred CeeEEeeCCCCCCCCeEEEecCCeEEEccCC-CCeeecCCCc----ccccceEEEEeecccCCcccCCCCCcccccEEEE
Q 007803 1 MVWGLFPIDPLPGEDKYYIFSKGNYKVGRKG-CDIIINKDKG----VSRVHAEILVDEMISLNPFQDKSSKVSTTRVRIK 75 (589)
Q Consensus 1 mMW~L~~~~~~~G~~~~~Ll~g~~YtIGRk~-cdIvI~~D~s----ISR~HA~I~v~~~~~~~~~~~~~~~~~~~~v~I~ 75 (589)
|.|+|...+ .+...+.+..+..++|||.. |||+| +|+. |||.||+|.+... ..|+|+
T Consensus 16 ~~w~L~~~G--~~~~~~~l~~~~~~~IGR~~~~di~l-~~~~~~~~VSr~Ha~i~~~~~---------------g~~~l~ 77 (145)
T 2csw_A 16 RSWCLRRVG--MSAGWLLLEDGCEVTVGRGFGVTYQL-VSKICPLMISRNHCVLKQNPE---------------GQWTIM 77 (145)
T ss_dssp EEEEECCTT--CSCCBEECCTTCCEEEESSTTSSEEC-CCSSCGGGSCTTCEEEEECTT---------------SCEEEE
T ss_pred ccEEEEEeC--CCCCeEEeCCCCcEEECCCCCCCEEE-CCCCcCCCCChhHeEEEEcCC---------------CeEEEE
Confidence 579998433 34457777788899999997 99999 6777 9999999999532 159999
Q ss_pred EC-CccceEEeCcCCCceeeeccCCceEEccCCCeEEEccCC---cccceecC
Q 007803 76 DC-SKYGTFINKNLGSKEKVHEFPNKEATLKDGDLVSFGTGN---ATYRFCYA 124 (589)
Q Consensus 76 Dl-SknGTfVNg~~~~~ekI~~~~g~~~~L~~GD~I~fG~~~---~~frl~~~ 124 (589)
|+ |+||||||+ +++. +++++.|++||+|+||... ..++|.|.
T Consensus 78 Dl~S~NGT~vNg-----~~i~--~~~~~~L~~GD~I~iG~~~~~g~~~~f~~~ 123 (145)
T 2csw_A 78 DNKSLNGVWLNR-----ARLE--PLRVYSIHQGDYIQLGVPLENKENAEYEYE 123 (145)
T ss_dssp BSSCSSCEEESS-----CBCC--BTCCEECCSSCCEEESCCCTTCSSCSCCCC
T ss_pred ECCCCCCeEECC-----EECC--CCccEECCCCCEEEECCCCCCCceEEEEEE
Confidence 99 999999999 7776 4678999999999999742 34555554
No 7
>2jpe_A Nuclear inhibitor of protein phosphatase 1; FHA domain, NIPP1, mRNA splicing, transcription; NMR {Mus musculus}
Probab=99.63 E-value=7.7e-17 Score=148.62 Aligned_cols=88 Identities=31% Similarity=0.519 Sum_probs=74.6
Q ss_pred eEEEecC-CeEEEccCC--CCeeecCCCcccccceEEEEeecccCCcccCCCCCcccccEEEEEC-CccceEEeCcCCCc
Q 007803 16 KYYIFSK-GNYKVGRKG--CDIIINKDKGVSRVHAEILVDEMISLNPFQDKSSKVSTTRVRIKDC-SKYGTFINKNLGSK 91 (589)
Q Consensus 16 ~~~Ll~g-~~YtIGRk~--cdIvI~~D~sISR~HA~I~v~~~~~~~~~~~~~~~~~~~~v~I~Dl-SknGTfVNg~~~~~ 91 (589)
+.+.+.. ..|+|||.. |||+| +|++|||.||+|.++.. ...|+|+|+ |+||||||+
T Consensus 47 ~~~~l~~~~~~~IGR~~~~~di~l-~d~~VSr~Ha~i~~~~~--------------~~~~~l~Dl~S~NGT~vNg----- 106 (140)
T 2jpe_A 47 EKLIIDEKKYYLFGRNPDLCDFTI-DHQSCSRVHAALVYHKH--------------LKRVFLIDLNSTHGTFLGH----- 106 (140)
T ss_dssp EEECCSSCSBCCBSSCTTTSSSCC-CCSSSCTTSBEEEEBSS--------------SCCEEEECCSCSSCEESSS-----
T ss_pred eEEEeCCCCeEEecCCCccCCEEe-CCCCcChhheEEEEECC--------------CCcEEEEECCCCCCeEECC-----
Confidence 4555555 569999985 99999 79999999999999752 015999999 999999999
Q ss_pred eeeeccCCceEEccCCCeEEEccCCcccceecCC
Q 007803 92 EKVHEFPNKEATLKDGDLVSFGTGNATYRFCYAP 125 (589)
Q Consensus 92 ekI~~~~g~~~~L~~GD~I~fG~~~~~frl~~~P 125 (589)
++|. ++.++.|++||+|+||.....|++.+.|
T Consensus 107 ~~l~--~~~~~~L~~gd~i~~G~~~~~f~~~~~p 138 (140)
T 2jpe_A 107 IRLE--PHKPQQIPIDSTVSFGASTRAYTLREKP 138 (140)
T ss_dssp CEEC--SSSCCEECTTCCBBCSSCCCCBCCBCCC
T ss_pred EECC--CCccEECCCCCEEEECCceEEEEEecCC
Confidence 8886 5678999999999999988888888877
No 8
>3els_A PRE-mRNA leakage protein 1; intrinsically unstructured domain, forkhead-associated domai domain, PRE-mRNA retention and splicing; 1.80A {Saccharomyces cerevisiae}
Probab=99.63 E-value=4.5e-16 Score=147.00 Aligned_cols=102 Identities=21% Similarity=0.317 Sum_probs=78.3
Q ss_pred eeEEeeCCCCC-C---CCeEEEecCCeEEEccCC----------------CCeeecCCCcccccceEEEEeecccCCccc
Q 007803 2 VWGLFPIDPLP-G---EDKYYIFSKGNYKVGRKG----------------CDIIINKDKGVSRVHAEILVDEMISLNPFQ 61 (589)
Q Consensus 2 MW~L~~~~~~~-G---~~~~~Ll~g~~YtIGRk~----------------cdIvI~~D~sISR~HA~I~v~~~~~~~~~~ 61 (589)
+|.|+...... + .+.+.|..+..|+|||.. |||+| ++++|||+||.|.+...
T Consensus 31 ~~~l~v~k~g~~~~~~~~~~~L~~~~~~~IGR~~~~~~~~~~~~~n~~~~~Di~l-~~~~VSr~HA~I~~~~~------- 102 (158)
T 3els_A 31 MYELVIYRKNDKDKGPWKRYDLNGRSCYLVGRELGHSLDTDLDDRTEIVVADIGI-PEETSSKQHCVIQFRNV------- 102 (158)
T ss_dssp CEEEEEEEGGGGGGCCSEEEECSSCSEEEEEECCCC---------CCCCCCSEEE-CCTTSCSSCEEEEEEEE-------
T ss_pred ceEEEEEeCCccCcccceEEEecCCCceEeccccccccccccccccccccCCEEc-CCCCCCcccEEEEEEcc-------
Confidence 58887763211 1 135666677899999982 99999 78999999999999864
Q ss_pred CCCCCcccccEEEEEC-CccceEEeCcCCCceeeeccCCceEEccCCCeEEEccCCc--ccceec
Q 007803 62 DKSSKVSTTRVRIKDC-SKYGTFINKNLGSKEKVHEFPNKEATLKDGDLVSFGTGNA--TYRFCY 123 (589)
Q Consensus 62 ~~~~~~~~~~v~I~Dl-SknGTfVNg~~~~~ekI~~~~g~~~~L~~GD~I~fG~~~~--~frl~~ 123 (589)
.....++|+|+ |+||||||| ++|. ++.++.|++||+|+||.... .|+|.|
T Consensus 103 -----~~~~~~~l~Dl~StNGT~VNg-----~ri~--~~~~~~L~~GD~I~~G~s~~~~~~elvF 155 (158)
T 3els_A 103 -----RGILKCYVMDLDSSNGTCLNN-----VVIP--GARYIELRSGDVLTLSEFEEDNDYELIF 155 (158)
T ss_dssp -----TTEEEEEEEECSCSSCCEETT-----EECC--TTCCEECCTTEEEESSSCGGGCCEEEEE
T ss_pred -----CCeeEEEEEeCCCCCccEECC-----EEcC--CCceEEcCCCCEEEECCCCCCCCEEEEE
Confidence 11225999999 999999999 8886 46689999999999997653 455543
No 9
>3po8_A RV0020C protein, putative uncharacterized protein TB39.8; FHA domain, synthetic peptide, peptide binding protein; 1.50A {Mycobacterium tuberculosis} SCOP: b.26.1.0 PDB: 3poa_A* 2lc1_A
Probab=99.63 E-value=6.9e-16 Score=134.17 Aligned_cols=85 Identities=33% Similarity=0.492 Sum_probs=71.6
Q ss_pred CCCeEEEecCCeEEEccCC-CCeeecCCCcccccceEEEEeecccCCcccCCCCCcccccEEEEEC-CccceEEeCcCCC
Q 007803 13 GEDKYYIFSKGNYKVGRKG-CDIIINKDKGVSRVHAEILVDEMISLNPFQDKSSKVSTTRVRIKDC-SKYGTFINKNLGS 90 (589)
Q Consensus 13 G~~~~~Ll~g~~YtIGRk~-cdIvI~~D~sISR~HA~I~v~~~~~~~~~~~~~~~~~~~~v~I~Dl-SknGTfVNg~~~~ 90 (589)
|..+.+.+....++|||.. |||.| +|+.|||.||.|.+... .|+|+|+ |+||||||+
T Consensus 13 g~g~~~~l~~~~~~IGR~~~~di~l-~d~~vSr~Ha~i~~~~~----------------~~~l~Dl~S~nGt~vng---- 71 (100)
T 3po8_A 13 GSGRTYQLREGSNIIGRGQDAQFRL-PDTGVSRRHLEIRWDGQ----------------VALLADLNSTNGTTVNN---- 71 (100)
T ss_dssp SSCCEEECCSEEEEEESSTTCSEEC-CCTTSCSSCEEEEECSS----------------CEEEEECSCSSCCEETT----
T ss_pred CCCcEEEECCCCEEEeCCCCCCEEC-CCCCcChhhCEEEEeCC----------------EEEEEECCCCCCEEECC----
Confidence 3356777888889999997 99999 68999999999998642 5999999 999999999
Q ss_pred ceeeeccCCceEEccCCCeEEEccCCcccceecCCe
Q 007803 91 KEKVHEFPNKEATLKDGDLVSFGTGNATYRFCYAPL 126 (589)
Q Consensus 91 ~ekI~~~~g~~~~L~~GD~I~fG~~~~~frl~~~Pl 126 (589)
+++. ++.|++||.|+||. ..|+|.+.|+
T Consensus 72 -~~i~-----~~~L~~gd~i~iG~--~~~~~~~~p~ 99 (100)
T 3po8_A 72 -APVQ-----EWQLADGDVIRLGH--SEIIVRMHPL 99 (100)
T ss_dssp -EECS-----EEECCTTCEEEETT--EEEEEEEEEC
T ss_pred -EECc-----eEECCCCCEEEECC--EEEEEEEEeC
Confidence 7874 78999999999996 4566666553
No 10
>3sqd_A PAX-interacting protein 1; tandem BRCT domains, cell cycle; HET: SEP; 2.15A {Homo sapiens}
Probab=99.62 E-value=5.8e-16 Score=152.91 Aligned_cols=190 Identities=15% Similarity=0.176 Sum_probs=131.1
Q ss_pred CeEEeecCcccc--hhHHHHHHhcCCeecccccccceEEEEeccccchhhHHHHHHcCCceechhHHHHHHhccCCCCCC
Q 007803 125 PLILFVDSFQVN--APLQEKVSSIGAFITSKFCQECTHILVQHHMRVKGELLDAIVAKKPLVDVSWLEVVAEKSIRTDFP 202 (589)
Q Consensus 125 PlVl~~Ssl~~~--~~L~~~l~~LGg~vv~~ws~~cTHLV~~~s~r~T~KlL~ALi~gkpIVtp~wl~aLa~~~~~~elP 202 (589)
.++++++++... ..+++.+..+||.++.++ ..|||||+ +...+|.|+++|+..|+|||+++|+.++.+.+ .+.
T Consensus 16 ~~~i~~SG~~~~~~~~l~~~i~~lGg~v~~~~-~~~THLI~-~~~~rT~K~l~A~~~g~~IVs~~Wl~~c~~~~---~~l 90 (219)
T 3sqd_A 16 TPFVLFTGFEPVQVQQYIKKLYILGGEVAESA-QKCTHLIA-SKVTRTVKFLTAISVVKHIVTPEWLEECFRCQ---KFI 90 (219)
T ss_dssp CCEEEECSCCHHHHHHHHHHHHHTTCEECSSG-GGCSEEEC-SSCCCCHHHHHHTTTCSEEECHHHHHHHHHHT---SCC
T ss_pred CeEEEEeCCChHHHHHHHHHHHHCCCEEeCCC-CCceEEEE-CCCCCCHHHHHHHHcCCCEecHHHHHHHHHcC---CCC
Confidence 345566655442 678899999999999997 79999999 57999999999999999999999999997654 366
Q ss_pred CCCCCCCCCccC--CCCccc---cCCcCcccCcCCcEEEEcCCCcccchhhHHHHHHHcCceEEEeeecCCCCCCccc--
Q 007803 203 GCNSHVTTLIME--GDPVEL---ANVDTLENCMRGYTFLLDSSMKYKYGDQLQSLLEVSGAKTLSIESFCPSSQDSEC-- 275 (589)
Q Consensus 203 d~~dflPpl~ie--~~~~~l---~p~~~R~~LF~G~TFIf~~~~qy~~~~~L~~lIe~aGGkvll~e~~~~~~~~~~~-- 275 (589)
++++|..+.... ...+.+ ..+..|..||+|++|++.+...+. .+.|+.+|+++||+++.... ......+.
T Consensus 91 ~e~~y~l~d~~~e~~~~~~l~~~l~ra~~~~LF~G~~f~it~~~~~~-~~~l~~lI~~~GG~v~~~~p--~~~~~~~~~~ 167 (219)
T 3sqd_A 91 DEQNYILRDAEAEVLFSFSLEESLKRAHVSPLFKAKYFYITPGICPS-LSTMKAIVECAGGKVLSKQP--SFRKLMEHKQ 167 (219)
T ss_dssp CSGGGBCCCHHHHHHTTCCHHHHHHHHHHSCTTTTEEEEECTTCSSC-HHHHHHHHHHTTCEEESSCC--CHHHHHHHHH
T ss_pred ChHhccCCCchhhhhcCCChHHHhhhhccccccCCcEEEEeCCCCCC-HHHHHHHHHHCCCEEECCCC--chHHhhhhhc
Confidence 788888765311 111111 112347899999999998877665 46899999999999974422 11000000
Q ss_pred c-ccCeEEEEeCCCChhhHHHHHhhCCCCccchhHHHHHHHhCCCCCCc
Q 007803 276 V-EHNSVVYVLPRKSEDCSKSILKLSSLSRVNEKDLICAVLSGHLDPSV 323 (589)
Q Consensus 276 g-~~~~vVlV~p~~w~~~~~~~~~l~glR~I~e~E~l~AIL~~~ldaS~ 323 (589)
. .....++|.-.+ .......+...|...++-.=|+.+||.+.+|...
T Consensus 168 ~~~~~~~ivis~~~-d~~~~~~~~~~~~~v~s~E~il~~Il~q~ld~~~ 215 (219)
T 3sqd_A 168 NSSLSEIILISCEN-DLHLCREYFARGIDVHNAEFVLTGVLTQTLDYES 215 (219)
T ss_dssp CTTSCEEEEEECGG-GGGGGHHHHHTTCCCEETHHHHHHHHHTCCCTTT
T ss_pred ccCCCCEEEEeccc-HHHHHHHHHHCCCcEEeHHHHHHHHHheeecchh
Confidence 0 112345554322 2222233334688888777779999999887654
No 11
>3va4_A Mediator of DNA damage checkpoint protein 1; cell cycle, FHA domain, DNA-damage, CHK2 and MDC1 dimerizati; HET: TPO; 1.54A {Mus musculus} PDB: 3va1_A* 3umz_A 3unm_A 3unn_A* 3uot_A* 3un0_B
Probab=99.62 E-value=1.1e-15 Score=140.24 Aligned_cols=88 Identities=25% Similarity=0.346 Sum_probs=73.4
Q ss_pred CCeEEEecCCeEEEccCC-CCeeecCCCcccccceEEEEeecccCCcccCCCCCcccccEEEEEC-CccceEEeCcCCCc
Q 007803 14 EDKYYIFSKGNYKVGRKG-CDIIINKDKGVSRVHAEILVDEMISLNPFQDKSSKVSTTRVRIKDC-SKYGTFINKNLGSK 91 (589)
Q Consensus 14 ~~~~~Ll~g~~YtIGRk~-cdIvI~~D~sISR~HA~I~v~~~~~~~~~~~~~~~~~~~~v~I~Dl-SknGTfVNg~~~~~ 91 (589)
..+.+.+....++|||.. |||+| +|++|||.||+|.+.... ..|+|+|+ |+||||||+
T Consensus 36 ~g~~~~L~~~~~~IGR~~~~di~l-~d~~VSr~HA~i~~~~~~--------------~~~~l~Dl~S~NGT~vNg----- 95 (132)
T 3va4_A 36 PERDFPLYLGKNVVGRSPDCSVAL-PFPSISKQHAVIEISAWN--------------KAPILQDCGSLNGTQIVK----- 95 (132)
T ss_dssp SCEEEEECSEEEEEESSTTSSEEC-CCTTSCTTCEEEEECSTT--------------SCCEEEECSCSSCEEETT-----
T ss_pred CceEEEECCCCEEEccCCCCCEEe-CCCCcChhHEEEEEEcCC--------------CEEEEEECCCCCCeEECC-----
Confidence 457788888899999987 99999 789999999999997420 15899999 999999999
Q ss_pred eeeeccCCceEEccCCCeEEEccCCcccce
Q 007803 92 EKVHEFPNKEATLKDGDLVSFGTGNATYRF 121 (589)
Q Consensus 92 ekI~~~~g~~~~L~~GD~I~fG~~~~~frl 121 (589)
+++.+.++.++.|++||+|+||.....|+.
T Consensus 96 ~~i~l~~~~~~~L~~GD~I~lG~~~l~f~~ 125 (132)
T 3va4_A 96 PPRVLPPGVSHRLRDQELILFADFPCQYHR 125 (132)
T ss_dssp TTEEECTTCCEECCTTCEEEETTEEEEEEE
T ss_pred EEcccCCCCEEECCCCCEEEECCEEEEEEE
Confidence 776556788999999999999975444443
No 12
>1l0b_A BRCA1; TANDEM-BRCT, three-helix bundle, unknown function; 2.30A {Rattus norvegicus} SCOP: c.15.1.3 c.15.1.3
Probab=99.61 E-value=5.8e-15 Score=144.46 Aligned_cols=187 Identities=13% Similarity=0.097 Sum_probs=118.7
Q ss_pred CCeEEeecCccc--chhHHHHHHhcCCeecccccccceEEEEeccc-----cchhhHHHHHHcCCceechhHHHHHHhcc
Q 007803 124 APLILFVDSFQV--NAPLQEKVSSIGAFITSKFCQECTHILVQHHM-----RVKGELLDAIVAKKPLVDVSWLEVVAEKS 196 (589)
Q Consensus 124 ~PlVl~~Ssl~~--~~~L~~~l~~LGg~vv~~ws~~cTHLV~~~s~-----r~T~KlL~ALi~gkpIVtp~wl~aLa~~~ 196 (589)
..+++|++++.. ...|++.+.++||.++.+|...|||||+. .. ++|.|+++|+..|++||+++||.++.+.+
T Consensus 6 ~~~~i~~sg~~~~~~~~l~~~~~~~G~~~~~~~~~~~THlI~~-~~~~~~~~rt~K~~~a~~~g~~IV~~~Wl~~~~~~~ 84 (229)
T 1l0b_A 6 RDISMVVSGLTPKEVMIVQKFAEKYRLALTDVITEETTHVIIK-TDAEFVCERTLKYFLGIAGGKWIVSYSWVIKSIQER 84 (229)
T ss_dssp CCCEEEEESCCHHHHHHHHHHHHHTTCEECSSCCSSCCEEEEC-BCTTSEECCCHHHHHHHHTTCEEEETHHHHHHHTTT
T ss_pred CCeEEEEcCCCHHHHHHHHHHHHHcCCEEeCCcCCCCCEEEEc-CCccccccccHHHHHHHHCCCcEecHHHHHHHHHCC
Confidence 356677766543 26788999999999999999999999993 44 79999999999999999999999997654
Q ss_pred CCCCCCCCCCCCCCCccCCCCccccC---CcCcccCcCCcEEEEcCCCcccchhhHHHHHHHcCceEEEeeecCCCCCCc
Q 007803 197 IRTDFPGCNSHVTTLIMEGDPVELAN---VDTLENCMRGYTFLLDSSMKYKYGDQLQSLLEVSGAKTLSIESFCPSSQDS 273 (589)
Q Consensus 197 ~~~elPd~~dflPpl~ie~~~~~l~p---~~~R~~LF~G~TFIf~~~~qy~~~~~L~~lIe~aGGkvll~e~~~~~~~~~ 273 (589)
.+.+++.|..............| +..+..||+|++|++.........+.|..+|+++||+++.... ...
T Consensus 85 ---~~~~e~~y~~~~~~~~~~~~~~~~~~r~~~~~lF~g~~~~~~~~~~~~~~~~l~~li~~~GG~v~~~~~--~~~--- 156 (229)
T 1l0b_A 85 ---KLLSVHEFEVKGDVVTGSNHQGPRRSRESQEKLFEGLQIYCCEPFTNMPKDELERMLQLCGASVVKELP--LLT--- 156 (229)
T ss_dssp ---SCCCSGGGBCCEETTTCSSSCHHHHHHHHC--CCTTCEEEECSCCSSSCHHHHHHHHHHTTCEEECSSS--CGG---
T ss_pred ---CcCChHHeEeccccccccccccchhhhhhhhhhhcCceEEEEecCCCCCHHHHHHHHHHCCCEEeCCcc--ccc---
Confidence 24556667654321110000011 2235689999999997542222346899999999999884322 110
Q ss_pred cccccCeEEEEeCCCChh--hHHHHHhhCCCCccchhHHHHHHHhCCC
Q 007803 274 ECVEHNSVVYVLPRKSED--CSKSILKLSSLSRVNEKDLICAVLSGHL 319 (589)
Q Consensus 274 ~~g~~~~vVlV~p~~w~~--~~~~~~~l~glR~I~e~E~l~AIL~~~l 319 (589)
.......+|++.+..|.. .+..++...+.+.|+..=|++.|..+.+
T Consensus 157 ~~~~~~~~vvv~~~~~~~~~~~~~l~~~~~i~iVs~~WlldsI~~~~~ 204 (229)
T 1l0b_A 157 RDTGAHPIVLVQPSAWTEDNDCPDIGQLCKGRLVMWDWVLDSISVYRC 204 (229)
T ss_dssp GCCSSCCEEEEC-------------------CEEETHHHHHHHHTTSC
T ss_pred ccCCCceEEEEcCCccchhhhHHHHHHHcCCeEeehhHHHHHHhcCCc
Confidence 111123456666654432 2333445678999999999999999864
No 13
>2xt9_B Putative signal transduction protein GARA; lyase-signaling protein complex, KDH, KGD; HET: TPP; 2.20A {Mycobacterium smegmatis}
Probab=99.61 E-value=2.1e-15 Score=134.48 Aligned_cols=85 Identities=31% Similarity=0.452 Sum_probs=69.5
Q ss_pred eeEEeeCCCCCCCCeEEEecCCeEEEccCC-CCeeecCCCcccccceEEEEeecccCCcccCCCCCcccccEEEEEC-Cc
Q 007803 2 VWGLFPIDPLPGEDKYYIFSKGNYKVGRKG-CDIIINKDKGVSRVHAEILVDEMISLNPFQDKSSKVSTTRVRIKDC-SK 79 (589)
Q Consensus 2 MW~L~~~~~~~G~~~~~Ll~g~~YtIGRk~-cdIvI~~D~sISR~HA~I~v~~~~~~~~~~~~~~~~~~~~v~I~Dl-Sk 79 (589)
||.|..... .+..+.+.+....++|||.. |||+| +|+.|||.||+|.+... .|+|+|+ |+
T Consensus 11 ~~~L~v~~g-~~~g~~~~l~~~~~~IGR~~~~di~l-~d~~vSr~Ha~i~~~~~----------------~~~l~Dl~S~ 72 (115)
T 2xt9_B 11 SALLVVKRG-PNAGSRFLLDQPTTSAGRHPDSDIFL-DDVTVSRRHAEFRLEGG----------------EFQVVDVGSL 72 (115)
T ss_dssp CEEEEEEES-TTTTCEEEECSSEEEEESSTTSSEEC-CSTTSCSSCEEEEEETT----------------EEEEEECSCS
T ss_pred cEEEEEEeC-CCCCeEEEECCCCEEECCCCCCCEEe-CCcccChhheEEEEECC----------------EEEEEECCCC
Confidence 455544322 12345667778899999997 99999 78999999999999642 6999999 99
Q ss_pred cceEEeCcCCCceeeeccCCceEEccCCCeEEEcc
Q 007803 80 YGTFINKNLGSKEKVHEFPNKEATLKDGDLVSFGT 114 (589)
Q Consensus 80 nGTfVNg~~~~~ekI~~~~g~~~~L~~GD~I~fG~ 114 (589)
||||||+ +++. ++.|++||+|+||.
T Consensus 73 nGt~vng-----~~i~-----~~~L~~gd~i~iG~ 97 (115)
T 2xt9_B 73 NGTYVNR-----EPVD-----SAVLANGDEVQIGK 97 (115)
T ss_dssp SCEEETT-----EECS-----EEEECTTCEEEETT
T ss_pred CCeEECC-----EEcc-----eEECCCCCEEEECC
Confidence 9999999 7874 78999999999996
No 14
>2jqj_A DNA damage response protein kinase DUN1; protein/phosphopeptide, cell cycle; HET: DNA; NMR {Saccharomyces cerevisiae} PDB: 2jql_A*
Probab=99.61 E-value=1.4e-15 Score=141.91 Aligned_cols=101 Identities=31% Similarity=0.512 Sum_probs=73.7
Q ss_pred EEeeCCCCCCCCeEEEecCCeEEEccCC-CCeeecCCCcccccceEEEEeecccCCcccCCCCCcccccEEEEECCccce
Q 007803 4 GLFPIDPLPGEDKYYIFSKGNYKVGRKG-CDIIINKDKGVSRVHAEILVDEMISLNPFQDKSSKVSTTRVRIKDCSKYGT 82 (589)
Q Consensus 4 ~L~~~~~~~G~~~~~Ll~g~~YtIGRk~-cdIvI~~D~sISR~HA~I~v~~~~~~~~~~~~~~~~~~~~v~I~DlSknGT 82 (589)
.|...++ .++..+.|..+..|+|||.. |||+| +|++|||.||+|.+....... .....|+|+|+|+|||
T Consensus 20 ~L~~~~~-~~g~~~~l~~~~~~~IGR~~~~di~l-~d~~VSr~Ha~I~~~~~~~~~--------~~~~~~~l~DlS~NGT 89 (151)
T 2jqj_A 20 HLVNLIP-GKEQKVEITNRNVTTIGRSRSCDVIL-SEPDISTFHAEFHLLQMDVDN--------FQRNLINVIDKSRNGT 89 (151)
T ss_dssp EEEEEET-TEEEEEEEECCSCEEEESSTTSSEEC-CCTTCCTTSEEEEEEEEEETT--------EEEEEEEEEECCSSCE
T ss_pred EEEEecC-CCceEEEEcCCCeEEeCCCCCCCEEE-CCCCCccccCEEEEecccCCc--------CcCCEEEEEECCCCCe
Confidence 4444432 13345555556899999997 99999 789999999999995321100 0123699999999999
Q ss_pred EEeCcCCCceeeeccCCceEEccCCCeEEEccCCcccceec
Q 007803 83 FINKNLGSKEKVHEFPNKEATLKDGDLVSFGTGNATYRFCY 123 (589)
Q Consensus 83 fVNg~~~~~ekI~~~~g~~~~L~~GD~I~fG~~~~~frl~~ 123 (589)
|||| ++|. ++ ++.|++||+|+||. ...|+|.+
T Consensus 90 ~VNg-----~~i~--~~-~~~L~~GD~I~lG~-~~~~~f~~ 121 (151)
T 2jqj_A 90 FING-----NRLV--KK-DYILKNGDRIVFGK-SCSFLFKY 121 (151)
T ss_dssp EETT-----EECC--SS-CEEECSSEEEEETT-TEEEEEEE
T ss_pred EECC-----EEcC--CC-ceECCCCCEEEECC-CcEEEEEE
Confidence 9999 8886 34 79999999999997 22455554
No 15
>2etx_A Mediator of DNA damage checkpoint protein 1; tandem BRCT domains histone gamma-H2AX, cell cycle; 1.33A {Homo sapiens} PDB: 2azm_A* 3k05_A* 2ado_A
Probab=99.61 E-value=1.7e-15 Score=147.81 Aligned_cols=179 Identities=16% Similarity=0.176 Sum_probs=124.3
Q ss_pred EEeecCcccchhHHHHHHhcCCeecccccccceEEEEeccccchhhHHHHHHcCCceechhHHHHHHhccCCCCCCCCCC
Q 007803 127 ILFVDSFQVNAPLQEKVSSIGAFITSKFCQECTHILVQHHMRVKGELLDAIVAKKPLVDVSWLEVVAEKSIRTDFPGCNS 206 (589)
Q Consensus 127 Vl~~Ssl~~~~~L~~~l~~LGg~vv~~ws~~cTHLV~~~s~r~T~KlL~ALi~gkpIVtp~wl~aLa~~~~~~elPd~~d 206 (589)
+++++++.. ..+++.+..|||.++.+|. +|||||+ +...+|.|+|+|+..|+|||+++||.++.+.+ .+.++++
T Consensus 14 ~v~~sG~~~-~~~~~~i~~lGg~~~~~~~-~~THlI~-~~~~rt~K~l~a~~~g~~IV~~~Wl~~~~~~~---~~l~e~~ 87 (209)
T 2etx_A 14 KVLFTGVVD-ARGERAVLALGGSLAGSAA-EASHLVT-DRIRRTVKFLCALGRGIPILSLDWLHQSRKAG---FFLPPDE 87 (209)
T ss_dssp EEEECSSCC-HHHHHHHHHTTCEECSSTT-TCSEEEC-SSCCCSHHHHHHHHHTCCEECTHHHHHHHHHT---SCCCSGG
T ss_pred EEEEeCCCc-HHHHHHHHHCCCEEeCCCC-CceEEEE-CCCCCCHHHHHHHhcCCccccHHHHHHHHHcC---CCCChhh
Confidence 344444443 4578999999999999998 5999999 57889999999999999999999999997664 3677888
Q ss_pred CCCCCccC--CCCccc---cCCcCcccCcCCcEEEEcCCCcccchhhHHHHHHHcCceEEEeeecCCCCCCccccccCeE
Q 007803 207 HVTTLIME--GDPVEL---ANVDTLENCMRGYTFLLDSSMKYKYGDQLQSLLEVSGAKTLSIESFCPSSQDSECVEHNSV 281 (589)
Q Consensus 207 flPpl~ie--~~~~~l---~p~~~R~~LF~G~TFIf~~~~qy~~~~~L~~lIe~aGGkvll~e~~~~~~~~~~~g~~~~v 281 (589)
|.+..... ...+.+ ..+..+..||+|++|++.+..+... +.|..+|+++||+++.... ... ....
T Consensus 88 y~~~~~~~~~~~~~~l~~~~~~a~~~~lF~g~~~~~~~~~~~~~-~~l~~li~~~GG~v~~~~~--~~~-------~~~~ 157 (209)
T 2etx_A 88 YVVTDPEQEKNFGFSLQDALSRARERRLLEGYEIYVTPGVQPPP-PQMGEIISCCGGTYLPSMP--RSY-------KPQR 157 (209)
T ss_dssp GBCCCHHHHHHTTCCHHHHHHHHHHSCTTTTCEEEECTTCSSCH-HHHHHHHHHTTCEECSSCC--CSC-------CTTE
T ss_pred ccccChhhhhhcCCCHHHHHhhhhhCCCcCCcEEEEeCCCCCCH-HHHHHHHHHCCCEEECCCC--CCC-------CCce
Confidence 88765311 111111 1123346899999999988766543 6899999999999874322 110 1123
Q ss_pred EEEeCCCChhhHHHHHhhCCCCccchhHHHHHHHhCCCCCC
Q 007803 282 VYVLPRKSEDCSKSILKLSSLSRVNEKDLICAVLSGHLDPS 322 (589)
Q Consensus 282 VlV~p~~w~~~~~~~~~l~glR~I~e~E~l~AIL~~~ldaS 322 (589)
++|.... .......+...+...++..=|++.|+.+.+|..
T Consensus 158 ivI~~~~-d~~~~~~~~~~~i~vvs~eWi~~sI~~q~ld~e 197 (209)
T 2etx_A 158 VVITCPQ-DFPHCSIPLRVGLPLLSPEFLLTGVLKQEAKPE 197 (209)
T ss_dssp EEECCGG-GGGGCHHHHHHTCCEECTHHHHHHHHHTCCCGG
T ss_pred EEEECcc-cHHHHHHHHHCCCeEEcHHHHHHHHHhcccChH
Confidence 4442211 111112345568899998889999999876543
No 16
>1dmz_A Protein (protein kinase SPK1); beta-sandwich, antiparallel beta-sheets, transferase; NMR {Saccharomyces cerevisiae} SCOP: b.26.1.2 PDB: 1fhq_A 1fhr_A* 1j4k_A* 1j4l_A* 1k2m_A* 1k2n_A*
Probab=99.61 E-value=2.4e-15 Score=141.71 Aligned_cols=111 Identities=17% Similarity=0.240 Sum_probs=78.2
Q ss_pred EEeeCCCCCCCCeEEEecC-CeEEEccCC-CCeeecCCCcccccceEEEEeecccCCcccCCCCCcccccEEEEECCccc
Q 007803 4 GLFPIDPLPGEDKYYIFSK-GNYKVGRKG-CDIIINKDKGVSRVHAEILVDEMISLNPFQDKSSKVSTTRVRIKDCSKYG 81 (589)
Q Consensus 4 ~L~~~~~~~G~~~~~Ll~g-~~YtIGRk~-cdIvI~~D~sISR~HA~I~v~~~~~~~~~~~~~~~~~~~~v~I~DlSknG 81 (589)
.|.|.+...++..++|..+ ..|+|||.. |||+| +|+.|||.||+|.+.....+..... ........|+|+|+|+||
T Consensus 7 ~L~p~~~~~~~~~i~L~~~~~~~~IGR~~~~di~l-~d~~VSr~Ha~I~~~~~~~g~~~~~-~~~~~~~~~~l~DlStNG 84 (158)
T 1dmz_A 7 TLKPLPDSIIQESLEIQQGVNPFFIGRSEDCNCKI-EDNRLSRVHCFIFKKRHAVGKSMYE-SPAQGLDDIWYCHTGTNV 84 (158)
T ss_dssp EEEECTTSSCCCCEEETTSCSCEEEESSTTSSEEC-CCTTSCSSSEEEEEEECCCCCCCSS-CSCSSCEEEEEEECSTTC
T ss_pred EEEeCCCCccceEEEEcCCCceEEECCCCCCCEEe-CCCCcChHHeEEEEecCcccccccc-ccccccccEEEEECCcCC
Confidence 3677665445556665433 359999997 99999 7899999999999976221100000 000011479999999999
Q ss_pred eEEeCcCCCceeeeccCCceEEccCCCeEEE-----ccCCcccceec
Q 007803 82 TFINKNLGSKEKVHEFPNKEATLKDGDLVSF-----GTGNATYRFCY 123 (589)
Q Consensus 82 TfVNg~~~~~ekI~~~~g~~~~L~~GD~I~f-----G~~~~~frl~~ 123 (589)
||||| ++|. ++.++.|++||+|+| |.....|++..
T Consensus 85 T~VNg-----~ri~--~~~~~~L~~GD~I~l~~d~~G~~~l~f~~~~ 124 (158)
T 1dmz_A 85 SYLNN-----NRMI--QGTKFLLQDGDEIKIIWDKNNKFVIGFKVEI 124 (158)
T ss_dssp CEETT-----EECC--SSEEEECCSSCCEESCCCTTTTCCCCEEEEC
T ss_pred eEECC-----EEcC--CCceEEcCCCCEEEEeecCCCCEEEEEEEEe
Confidence 99999 8886 467899999999999 76555555544
No 17
>1lgp_A Cell cycle checkpoint protein CHFR; FHA, tungstate, domain swapping; 2.00A {Homo sapiens} SCOP: b.26.1.2 PDB: 1lgq_A
Probab=99.60 E-value=1.2e-15 Score=135.91 Aligned_cols=92 Identities=32% Similarity=0.531 Sum_probs=73.5
Q ss_pred ee-EEeeCCCCCCCCeEEEecCCeEEEccCC-CCeeecCCCcccccceEEEEeecccCCcccCCCCCcccccEEEEECCc
Q 007803 2 VW-GLFPIDPLPGEDKYYIFSKGNYKVGRKG-CDIIINKDKGVSRVHAEILVDEMISLNPFQDKSSKVSTTRVRIKDCSK 79 (589)
Q Consensus 2 MW-~L~~~~~~~G~~~~~Ll~g~~YtIGRk~-cdIvI~~D~sISR~HA~I~v~~~~~~~~~~~~~~~~~~~~v~I~DlSk 79 (589)
+| .|.+.++..+ .+.+.+....++|||.. |||+|++++.|||.||.|.++.. ...|+|+|.|+
T Consensus 3 ~wg~L~~~~~~~~-~~~~~l~~~~~~iGR~~~~di~l~~~~~vSr~Ha~i~~~~~--------------~~~~~l~D~S~ 67 (116)
T 1lgp_A 3 PWGRLLRLGAEEG-EPHVLLRKREWTIGRRRGCDLSFPSNKLVSGDHCRIVVDEK--------------SGQVTLEDTST 67 (116)
T ss_dssp CCEEECCTTCCSS-SCCEEECSSEEEEESSTTSSEECTTCTTSCTTCEEEEECTT--------------TCCEEEEECSS
T ss_pred CEEEEEEeCCCCC-ccEEEECCCCEEECCCCCCCEEeCCCCCCChhHeEEEEECC--------------CCeEEEEECCc
Confidence 48 6777654223 34556678999999997 99999545699999999999631 01699999999
Q ss_pred cceEEeCcCCCceeeeccCCceEEccCCCeEEEccC
Q 007803 80 YGTFINKNLGSKEKVHEFPNKEATLKDGDLVSFGTG 115 (589)
Q Consensus 80 nGTfVNg~~~~~ekI~~~~g~~~~L~~GD~I~fG~~ 115 (589)
||||||+ +++. ++.++.|++||+|+||..
T Consensus 68 NGt~vng-----~~l~--~~~~~~L~~GD~i~~G~~ 96 (116)
T 1lgp_A 68 SGTVINK-----LKVV--KKQTCPLQTGDVIYLVYR 96 (116)
T ss_dssp SCCCCCC-----CCCC--CSSCCCCCTTCEEEEECC
T ss_pred CCcEECC-----EEcC--CCCcEECCCCCEEEEecc
Confidence 9999999 7775 467899999999999974
No 18
>1mzk_A Kinase associated protein phosphatase; beta sandwich, hydrolase; NMR {Arabidopsis thaliana} SCOP: b.26.1.2
Probab=99.60 E-value=2.4e-15 Score=138.56 Aligned_cols=95 Identities=24% Similarity=0.218 Sum_probs=74.0
Q ss_pred CeeEEeeCCCCCCCCeEEEecC----CeEEEccCC-CCeeecCCCcccccceEEEEeecccCCcccCCCCCcccccEEEE
Q 007803 1 MVWGLFPIDPLPGEDKYYIFSK----GNYKVGRKG-CDIIINKDKGVSRVHAEILVDEMISLNPFQDKSSKVSTTRVRIK 75 (589)
Q Consensus 1 mMW~L~~~~~~~G~~~~~Ll~g----~~YtIGRk~-cdIvI~~D~sISR~HA~I~v~~~~~~~~~~~~~~~~~~~~v~I~ 75 (589)
|||.|........+..+.|-.+ ..|+|||.. |+|+| +|+.|||.||+|.+... ...|+|+
T Consensus 6 ~~~~L~v~~G~~~g~~~~l~~~~~~~~~~~IGR~~~~di~l-~d~~VSr~Ha~i~~~~~--------------~~~~~l~ 70 (139)
T 1mzk_A 6 SWLFLEVIAGPAIGLQHAVNSTSSSKLPVKLGRVSPSDLAL-KDSEVSGKHAQITWNST--------------KFKWELV 70 (139)
T ss_dssp EEEEEEECSSTTCSCEEEECTTCSTTCSEEEESSSSCSEEC-CCTTSSSEEEEEEEETT--------------TTEEEEE
T ss_pred CeEEEEEEeCCCCCeEEEecCCCCccceEEeeCCCCCCEEe-CCCCCChHHcEEEEECC--------------CCEEEEE
Confidence 6788877654323344444433 379999997 99999 79999999999999863 0159999
Q ss_pred EC-CccceEEeCcCCCceeeec------cCCceEEccCCCeEEEccC
Q 007803 76 DC-SKYGTFINKNLGSKEKVHE------FPNKEATLKDGDLVSFGTG 115 (589)
Q Consensus 76 Dl-SknGTfVNg~~~~~ekI~~------~~g~~~~L~~GD~I~fG~~ 115 (589)
|+ |+||||||+ +++.. .++.++.|++||+|+||..
T Consensus 71 DlgS~NGT~vNg-----~~i~~~~~~~~~~~~~~~L~~GD~I~iG~~ 112 (139)
T 1mzk_A 71 DMGSLNGTLVNS-----HSISHPDLGSRKWGNPVELASDDIITLGTT 112 (139)
T ss_dssp ETTCSSCCEETT-----EESSCCCTTTCCCCCCEECCTTEEEECSSS
T ss_pred ECCCCCCEEECC-----EECcCcccccccCCceEECCCCCEEEECCE
Confidence 99 999999999 77751 1357899999999999964
No 19
>2kb3_A Oxoglutarate dehydrogenase inhibitor; forkhead-associated domain, kinase substrate, GARA, FHA, cytoplasm, phosphoprotein; HET: TPO; NMR {Corynebacterium glutamicum} PDB: 2kb4_A
Probab=99.60 E-value=2.4e-15 Score=139.81 Aligned_cols=85 Identities=27% Similarity=0.430 Sum_probs=70.4
Q ss_pred eeEEeeCCCCCCCCeEEEecCCeEEEccCC-CCeeecCCCcccccceEEEEeecccCCcccCCCCCcccccEEEEEC-Cc
Q 007803 2 VWGLFPIDPLPGEDKYYIFSKGNYKVGRKG-CDIIINKDKGVSRVHAEILVDEMISLNPFQDKSSKVSTTRVRIKDC-SK 79 (589)
Q Consensus 2 MW~L~~~~~~~G~~~~~Ll~g~~YtIGRk~-cdIvI~~D~sISR~HA~I~v~~~~~~~~~~~~~~~~~~~~v~I~Dl-Sk 79 (589)
||.|..... .+....+.+....++|||.. |||+| +|+.|||+||+|.+... .|+|+|+ |+
T Consensus 46 ~~~L~v~~G-~~~g~~~~L~~~~~~IGR~~~~di~l-~d~~VSr~Ha~I~~~~~----------------~~~l~DlgS~ 107 (143)
T 2kb3_A 46 SALLVVKRG-PNAGARFLLDQPTTTAGRHPESDIFL-DDVTVSRRHAEFRINEG----------------EFEVVDVGSL 107 (143)
T ss_dssp CEEEEEEES-TTTTCEEEECSSEEEESSCTTCSBCC-CCSSCCSSSEEEEEETT----------------EEEEEESCCS
T ss_pred cEEEEEEeC-CCCCeEEEeCCCCeeccCCCCCCEEe-CCCCcChhhEEEEEECC----------------EEEEEECCCc
Confidence 566654432 12346677778899999997 99999 78999999999999642 6999999 99
Q ss_pred cceEEeCcCCCceeeeccCCceEEccCCCeEEEcc
Q 007803 80 YGTFINKNLGSKEKVHEFPNKEATLKDGDLVSFGT 114 (589)
Q Consensus 80 nGTfVNg~~~~~ekI~~~~g~~~~L~~GD~I~fG~ 114 (589)
||||||+ +++. ++.|++||+|+||.
T Consensus 108 NGT~VNg-----~~i~-----~~~L~~GD~I~iG~ 132 (143)
T 2kb3_A 108 NGTYVNR-----EPRN-----AQVMQTGDEIQIGK 132 (143)
T ss_dssp SCCEETT-----EECS-----EEECCTTEEEEETT
T ss_pred CCeEECC-----EEcc-----eEECCCCCEEEECC
Confidence 9999999 8884 78999999999996
No 20
>1gxc_A CHK2, CDS1, serine/threonine-protein kinase CHK2; phosphoprotein-binding domain, checkpoint kinase, transferase; HET: TPO; 2.7A {Homo sapiens} SCOP: b.26.1.2
Probab=99.60 E-value=3.9e-15 Score=138.81 Aligned_cols=92 Identities=23% Similarity=0.343 Sum_probs=73.0
Q ss_pred ee-EEeeCCCCCCCCeEEEecCCeEEEccCC-CCeeecCCC---------cccccceEEEEeecccCCcccCCCCCcccc
Q 007803 2 VW-GLFPIDPLPGEDKYYIFSKGNYKVGRKG-CDIIINKDK---------GVSRVHAEILVDEMISLNPFQDKSSKVSTT 70 (589)
Q Consensus 2 MW-~L~~~~~~~G~~~~~Ll~g~~YtIGRk~-cdIvI~~D~---------sISR~HA~I~v~~~~~~~~~~~~~~~~~~~ 70 (589)
+| .|.+.. ++...+.+.+..|+|||.. |+|+| +++ .|||.||.|.+.... ....
T Consensus 29 ~w~~L~~~~---~~~~~i~L~~~~~~IGR~~~~di~l-~d~~~~~~~~~~~VSr~Ha~I~~~~~~-----------~~~~ 93 (149)
T 1gxc_A 29 PWARLWALQ---DGFANLECVNDNYWFGRDKSCEYCF-DEPLLKRTDKYRTYSKKHFRIFREVGP-----------KNSY 93 (149)
T ss_dssp CCEEEEECS---TTCCCEEECSSEEEEESSTTCSEEC-CCGGGGGSSGGGGSCTTCEEEEEEECT-----------TSSE
T ss_pred eeEEEEEcC---CCCceEEECCCCEEecCCCCCCEEE-CCccccccccCCcCchhheEEEEECCC-----------Ccee
Confidence 46 566544 2233466678999999997 99999 566 499999999998631 1123
Q ss_pred cEEEEECCccceEEeCcCCCceeeeccCCceEEccCCCeEEEccC
Q 007803 71 RVRIKDCSKYGTFINKNLGSKEKVHEFPNKEATLKDGDLVSFGTG 115 (589)
Q Consensus 71 ~v~I~DlSknGTfVNg~~~~~ekI~~~~g~~~~L~~GD~I~fG~~ 115 (589)
.|+|+|+|+||||||| ++|. ++.++.|++||+|+||..
T Consensus 94 ~~~i~D~StNGT~VNg-----~~i~--~~~~~~L~~GD~I~lG~~ 131 (149)
T 1gxc_A 94 IAYIEDHSGNGTFVNT-----ELVG--KGKRRPLNNNSEIALSLS 131 (149)
T ss_dssp EEEEEECCSSCEEETT-----EECC--TTCEEECCTTEEEEESST
T ss_pred EEEEEECCCCCeEECC-----EECC--CCCeEECCCCCEEEECCC
Confidence 6999999999999999 8886 578999999999999974
No 21
>2k2w_A Recombination and DNA repair protein; BRCT domain, cell cycle checkpoint; NMR {Xenopus laevis}
Probab=99.59 E-value=3.3e-16 Score=140.29 Aligned_cols=94 Identities=16% Similarity=0.162 Sum_probs=75.1
Q ss_pred CcccCcCCcEEEEcCCCcccchhhHHHHHHHcCceEEEeee--------cCCCCCCccccccCeEEEEeC--CCChhhHH
Q 007803 225 TLENCMRGYTFLLDSSMKYKYGDQLQSLLEVSGAKTLSIES--------FCPSSQDSECVEHNSVVYVLP--RKSEDCSK 294 (589)
Q Consensus 225 ~R~~LF~G~TFIf~~~~qy~~~~~L~~lIe~aGGkvll~e~--------~~~~~~~~~~g~~~~vVlV~p--~~w~~~~~ 294 (589)
.|++||+|+||||++.+||+ .|.++|..|||++.++++ ..+++++.+.+.+++|.+..| ++|...+.
T Consensus 9 ~~~~LF~GKtFvFLn~KQ~k---kl~~aV~~~GG~~~l~~e~~~~~s~l~~~~tcVv~v~~t~SQ~~~~~s~~~wi~si~ 85 (118)
T 2k2w_A 9 KRKSIFKDKVFLFLNAKQYK---KLSPAVLFGGGKTDLLMGELKDASVLDNPATCVIDVAMTESQLSESQSTQPWITSTL 85 (118)
T ss_dssp CCSCSSTTCEEEESCSSTHH---HHHHHHHHTTCEEECCSSGGGSTHHHHSTTEEEEECSGGGCCGGGTTTCSCCCCHHH
T ss_pred hHHhhccCCEEEEeCHHHHH---HHHHHHHhcCceEEecccCCCchhhhcCCCeEEEEeCCCccceecCccchhhHHHHH
Confidence 69999999999999999997 999999999999999943 123333333333333333333 49999999
Q ss_pred HHHhhCCCCccchhHHHHHHHhCCCCC
Q 007803 295 SILKLSSLSRVNEKDLICAVLSGHLDP 321 (589)
Q Consensus 295 ~~~~l~glR~I~e~E~l~AIL~~~lda 321 (589)
+++++.|+|+|+|+||++|||+|+++.
T Consensus 86 ~~L~~~glR~IpEsEIGLAvl~cSte~ 112 (118)
T 2k2w_A 86 DLLQSKGLRTIPEAEIGLAVINVSTEI 112 (118)
T ss_dssp HHHHHHTCCEEEHHHHHHHHHHTCTTT
T ss_pred HHHHHcCCccCCHHHhhhhheeeehhh
Confidence 999999999999999999999987553
No 22
>3elv_A PRE-mRNA leakage protein 1; intrinsically unstructured domain, forkhead-associated domai domain, PRE-mRNA retention and splicing; 2.40A {Saccharomyces cerevisiae} PDB: 2jkd_A
Probab=99.59 E-value=2.1e-15 Score=147.72 Aligned_cols=102 Identities=21% Similarity=0.316 Sum_probs=77.6
Q ss_pred eeEEeeCCCCC-C---CCeEEEecCCeEEEccCC----------------CCeeecCCCcccccceEEEEeecccCCccc
Q 007803 2 VWGLFPIDPLP-G---EDKYYIFSKGNYKVGRKG----------------CDIIINKDKGVSRVHAEILVDEMISLNPFQ 61 (589)
Q Consensus 2 MW~L~~~~~~~-G---~~~~~Ll~g~~YtIGRk~----------------cdIvI~~D~sISR~HA~I~v~~~~~~~~~~ 61 (589)
.|.|+...... + -+.+.|.....|+|||.. |||+| +|++|||+||.|.+...
T Consensus 78 ~~~L~v~k~g~k~~~~i~~~~L~~~s~y~IGR~~~~~~~~~~~~~~e~~~cDIvL-~dp~VSR~HA~I~~~~~------- 149 (205)
T 3elv_A 78 MYELVIYRKNDKDKGPWKRYDLNGRSCYLVGRELGHSLDTDLDDRTEIVVADIGI-PEETSSKQHCVIQFRNV------- 149 (205)
T ss_dssp CEEEEEEEGGGCTTCCSEEEECSSCSEEEEEECCCC---------CCCCCCSEEE-CCTTSCTTCEEEEEEEE-------
T ss_pred ceEEEEEeCCCcccccceEEEecCCCceeecccccccccccccccccCccceEEe-CCCCCCcccEEEEEecC-------
Confidence 47776653111 1 135666677999999982 99999 79999999999998763
Q ss_pred CCCCCcccccEEEEEC-CccceEEeCcCCCceeeeccCCceEEccCCCeEEEccCC--cccceec
Q 007803 62 DKSSKVSTTRVRIKDC-SKYGTFINKNLGSKEKVHEFPNKEATLKDGDLVSFGTGN--ATYRFCY 123 (589)
Q Consensus 62 ~~~~~~~~~~v~I~Dl-SknGTfVNg~~~~~ekI~~~~g~~~~L~~GD~I~fG~~~--~~frl~~ 123 (589)
.....|+|+|+ |+||||||| ++|. ++.++.|++||+|+||... ..++|.|
T Consensus 150 -----~~~~~~~l~DLgStNGTfVNG-----~rI~--~~~~~~L~~GD~I~fG~s~r~~~~el~f 202 (205)
T 3elv_A 150 -----RGILKCYVMDLDSSNGTCLNN-----VVIP--GARYIELRSGDVLTLSEFEEDNDYELIF 202 (205)
T ss_dssp -----TTEEEEEEEECSCSSCCEETT-----EECC--BTSCEECCTTCEEESSSSGGGCSEEEEE
T ss_pred -----CCceeEEEEeCCCCCCCeECC-----EECC--CCceeECCCCCEEEECCCCCCCCeEEEE
Confidence 11235899999 999999999 8886 4667899999999999764 2455554
No 23
>2kfu_A RV1827 PThr 22; FHA domain, phosphorylation, intramolecular interaction, glutamate metabolism, phosphoprotein, protein binding; HET: TPO; NMR {Mycobacterium tuberculosis} PDB: 2kkl_A
Probab=99.57 E-value=5.4e-15 Score=140.23 Aligned_cols=85 Identities=31% Similarity=0.454 Sum_probs=70.5
Q ss_pred eeEEeeCCCCCCCCeEEEecCCeEEEccCC-CCeeecCCCcccccceEEEEeecccCCcccCCCCCcccccEEEEEC-Cc
Q 007803 2 VWGLFPIDPLPGEDKYYIFSKGNYKVGRKG-CDIIINKDKGVSRVHAEILVDEMISLNPFQDKSSKVSTTRVRIKDC-SK 79 (589)
Q Consensus 2 MW~L~~~~~~~G~~~~~Ll~g~~YtIGRk~-cdIvI~~D~sISR~HA~I~v~~~~~~~~~~~~~~~~~~~~v~I~Dl-Sk 79 (589)
||.|..... .+..+.|.+....++|||.. |||+| +|+.|||+||+|.+... .|+|+|+ |+
T Consensus 55 ~~~L~v~~G-~~~g~~~~L~~~~~~IGR~~~~di~l-~d~~VSr~HA~I~~~~~----------------~~~l~DlgS~ 116 (162)
T 2kfu_A 55 SALLVVKRG-PNAGSRFLLDQAITSAGRHPDSDIFL-DDVTVSRRHAEFRLENN----------------EFNVVDVGSL 116 (162)
T ss_dssp CCEEEEEES-TTCSCEEETTSSEEEEESCSSSSEES-TTTSSSSCSEEEEEETT----------------EEEEECCCCS
T ss_pred cEEEEEEeC-CCCCeEEEECCCCEEECCCCCCCEEE-CCCCcChhhEEEEEECC----------------EEEEEECCCC
Confidence 566654432 23346777888999999997 99999 78999999999999642 6999999 99
Q ss_pred cceEEeCcCCCceeeeccCCceEEccCCCeEEEcc
Q 007803 80 YGTFINKNLGSKEKVHEFPNKEATLKDGDLVSFGT 114 (589)
Q Consensus 80 nGTfVNg~~~~~ekI~~~~g~~~~L~~GD~I~fG~ 114 (589)
||||||+ +++. ++.|++||+|+||.
T Consensus 117 NGT~VNg-----~~i~-----~~~L~~GD~I~iG~ 141 (162)
T 2kfu_A 117 NGTYVNR-----EPVD-----SAVLANGDEVQIGK 141 (162)
T ss_dssp SCEEETT-----BCCS-----EEECCSSCEEEETT
T ss_pred CCeEECC-----EEcc-----eEECCCCCEEEECC
Confidence 9999999 7774 68999999999996
No 24
>1r21_A Antigen KI-67; beta sandwich, cell cycle; NMR {Homo sapiens} SCOP: b.26.1.2 PDB: 2aff_A*
Probab=99.57 E-value=2.9e-15 Score=135.88 Aligned_cols=81 Identities=25% Similarity=0.359 Sum_probs=68.8
Q ss_pred CeEEEecCCeEEEccCC-CCeeecCCCcccccceEEEEeecccCCcccCCCCCcccccEEEEEC-CccceEEeCcCCCce
Q 007803 15 DKYYIFSKGNYKVGRKG-CDIIINKDKGVSRVHAEILVDEMISLNPFQDKSSKVSTTRVRIKDC-SKYGTFINKNLGSKE 92 (589)
Q Consensus 15 ~~~~Ll~g~~YtIGRk~-cdIvI~~D~sISR~HA~I~v~~~~~~~~~~~~~~~~~~~~v~I~Dl-SknGTfVNg~~~~~e 92 (589)
.+.|.+....++|||.. |||+| +|++|||.||.|.+... .|+|+|+ |+||||||+ +
T Consensus 25 g~~~~l~~~~~~IGR~~~~di~l-~d~~VSr~Ha~i~~~~~----------------~~~l~Dl~S~nGt~vNg-----~ 82 (128)
T 1r21_A 25 GPHFPLSLSTCLFGRGIECDIRI-QLPVVSKQHCKIEIHEQ----------------EAILHNFSSTNPTQVNG-----S 82 (128)
T ss_dssp EEEEECCSSEEEEESSTTSSEEC-CCTTSCTTCEEEEECSS----------------CEEECCCCSSSCCEETT-----E
T ss_pred ceEEEECCCCEEECCCCCCCEEE-CCCCCChhHEEEEEECC----------------EEEEEECCCCCCEEECC-----E
Confidence 46677778999999997 99999 78999999999999652 5999999 999999999 8
Q ss_pred eeeccCCceEEccCCCeEEEccCCcccceec
Q 007803 93 KVHEFPNKEATLKDGDLVSFGTGNATYRFCY 123 (589)
Q Consensus 93 kI~~~~g~~~~L~~GD~I~fG~~~~~frl~~ 123 (589)
++. .++.|++||+|+||. ..|+|..
T Consensus 83 ~i~----~~~~L~~Gd~i~iG~--~~~~~~~ 107 (128)
T 1r21_A 83 VID----EPVRLKHGDVITIID--RSFRYEN 107 (128)
T ss_dssp ECS----SCEECCTTEEEECSS--CEEEEEE
T ss_pred ECC----CcEEcCCCCEEEECC--EEEEEEe
Confidence 885 579999999999995 3454443
No 25
>3l41_A BRCT-containing protein 1; BRC1, BRCT domain, tandem BRCT repeat, phosphoserine binding domain, DNA repair, cell division, mitosis; HET: SEP; 1.45A {Schizosaccharomyces pombe} PDB: 3l40_A*
Probab=99.57 E-value=1.4e-15 Score=150.56 Aligned_cols=190 Identities=15% Similarity=0.121 Sum_probs=127.5
Q ss_pred EEeecCcccchhHHHHHHhcCCeecccccccceEEEEeccccchhhHHHHHHcCCceechhHHHHHHhccCCCCCCCCCC
Q 007803 127 ILFVDSFQVNAPLQEKVSSIGAFITSKFCQECTHILVQHHMRVKGELLDAIVAKKPLVDVSWLEVVAEKSIRTDFPGCNS 206 (589)
Q Consensus 127 Vl~~Ssl~~~~~L~~~l~~LGg~vv~~ws~~cTHLV~~~s~r~T~KlL~ALi~gkpIVtp~wl~aLa~~~~~~elPd~~d 206 (589)
.++++++... ...+.+.+|||.++.++. +|||||+ +...+|.|+|+|++.|+|||+++||.++.+.+ .|+++++
T Consensus 10 ~v~fSG~~~~-~~~~~i~~lGg~v~~~~~-~~THlV~-~~~~RT~K~l~Aia~g~~IVs~~Wl~~~~~~~---~~l~e~~ 83 (220)
T 3l41_A 10 YITFTGYDKK-PSIDNLKKLDMSITSNPS-KCTHLIA-PRILRTSKFLCSIPYGPCVVTMDWINSCLKTH---EIVDEEP 83 (220)
T ss_dssp EEEECSCSSC-CCCGGGGGGTEEECSCTT-TCSEEEC-SSCCCBHHHHHHGGGCCEEECHHHHHHHHHHT---SCCCSGG
T ss_pred EEEEeccCCC-CCcchHhhcceeeccCch-hhhhhhh-hhHhhhcceeecCCCCCeEEEhHHHHhhhhhh---hccccCc
Confidence 3444444332 236788999999999986 6999999 58999999999999999999999999998654 4678899
Q ss_pred CCCCCcc-C-CCCcccc-----CCcCcccCcCCcEEEEcCCC--cccchhhHHHHHHHcCceEEEeeecCCCCCCcccc-
Q 007803 207 HVTTLIM-E-GDPVELA-----NVDTLENCMRGYTFLLDSSM--KYKYGDQLQSLLEVSGAKTLSIESFCPSSQDSECV- 276 (589)
Q Consensus 207 flPpl~i-e-~~~~~l~-----p~~~R~~LF~G~TFIf~~~~--qy~~~~~L~~lIe~aGGkvll~e~~~~~~~~~~~g- 276 (589)
|.+.... + ...+.+. .+..|..||+|++|++.+.. ++. .+.|..||++|||+++. . |+-.......
T Consensus 84 y~l~d~~~e~~~~~~l~~~~~rar~~~~~LF~G~~f~it~~~~~~p~-~~~l~~iI~~~GG~v~~-~--p~~~~~~~~~~ 159 (220)
T 3l41_A 84 YLLNDPEKELELGCTLESALKRARAQGPSLLEDYVVYLTSKTVAPEN-VPAVISIVKSNGGVCST-L--NVYNKRLARHL 159 (220)
T ss_dssp GBCCCHHHHHHHTSCHHHHHHHHHHHCSCTTTTSEEEEETTSSCGGG-HHHHHHHHHHTTCEEEE-E--CSCCHHHHHHH
T ss_pred cccCCcHHHhhccccHHHHHHHHHhcCchhhhheeEEEeccccCCCC-CceEEEEEecCCcEech-h--hHHHHHHHHhc
Confidence 9876531 0 1111111 12345899999999998876 554 37899999999999987 2 2111100000
Q ss_pred ccCeEEEEeCC----CChhhHHHHHh-hCCCCccchhHHHHHHHhCCCCCCcccCC
Q 007803 277 EHNSVVYVLPR----KSEDCSKSILK-LSSLSRVNEKDLICAVLSGHLDPSVLISP 327 (589)
Q Consensus 277 ~~~~vVlV~p~----~w~~~~~~~~~-l~glR~I~e~E~l~AIL~~~ldaS~L~~P 327 (589)
..+..++|.-. -| ..|.+... ..+.|.++-.=++.+||.+.+|-..=..|
T Consensus 160 ~~~~~~vis~~~d~~~~-~~f~~~~~~~~~~~i~~~e~ll~~il~q~l~~~~~~~~ 214 (220)
T 3l41_A 160 EDGNVVLITCNEDSHIW-TNFLDNASQNKTIFLQNYDWLIKTVLRQEIDVNDRIAD 214 (220)
T ss_dssp HHCCEEEEECGGGHHHH-TTTHHHHTTCTTEEEEEHHHHHHHHHHTCCCTTCCBCG
T ss_pred ccCCEEEEEeCCcchHH-HHhhccccccceEEEechhHHHHHHHHHHcCcchHHHH
Confidence 12335555431 33 33544442 22445676666699999998887655444
No 26
>1qu5_A Protein kinase SPK1; FHA, RAD53, transferase; NMR {Saccharomyces cerevisiae} SCOP: b.26.1.2
Probab=99.55 E-value=3.8e-15 Score=143.66 Aligned_cols=111 Identities=16% Similarity=0.234 Sum_probs=75.3
Q ss_pred EEeeCCCCCCCCeEEEecC-CeEEEccCC-CCeeecCCCcccccceEEEEeecccCCcccCCCCCcccccEEEEECCccc
Q 007803 4 GLFPIDPLPGEDKYYIFSK-GNYKVGRKG-CDIIINKDKGVSRVHAEILVDEMISLNPFQDKSSKVSTTRVRIKDCSKYG 81 (589)
Q Consensus 4 ~L~~~~~~~G~~~~~Ll~g-~~YtIGRk~-cdIvI~~D~sISR~HA~I~v~~~~~~~~~~~~~~~~~~~~v~I~DlSknG 81 (589)
.|.+.+....+..++|-.+ ..|+|||.. |||+| +|+.|||.||.|.+.....+....... ......|+|+|+|+||
T Consensus 31 ~L~~~~~~~~~~~i~L~~~~~~~~IGR~~~~di~l-~d~~VSr~HA~I~~~~~~~g~~~~e~~-~~~~~~~~l~DlStNG 108 (182)
T 1qu5_A 31 TLKPLPDSIIQESLEIQQGVNPFFIGRSEDCNCKI-EDNRLSRVHCFIFKKRHAVGKSMYESP-AQGLDDIWYCHTGTNV 108 (182)
T ss_dssp EECCCTTSSSCSCCCBTTCCSSEEESSSTTSSSCC-CCTTSCSSCEEEEEECCCCCSSCCSSC-CCSCCEEEECCCSSSC
T ss_pred EEEeCCCCCcceEEEEcCCCceEEECCCCCCCEEE-CCCCcChHHeEEEEecCcccccccccc-ccccceEEEEECCcCC
Confidence 4555543333344444433 359999997 99999 788999999999997621110000000 0011479999999999
Q ss_pred eEEeCcCCCceeeeccCCceEEccCCCeEEE-----ccCCcccceec
Q 007803 82 TFINKNLGSKEKVHEFPNKEATLKDGDLVSF-----GTGNATYRFCY 123 (589)
Q Consensus 82 TfVNg~~~~~ekI~~~~g~~~~L~~GD~I~f-----G~~~~~frl~~ 123 (589)
||||| ++|. ++.++.|++||+|+| |.....|++..
T Consensus 109 T~VNg-----~ri~--~~~~~~L~~GD~I~l~~d~~G~~~l~f~~~~ 148 (182)
T 1qu5_A 109 SYLNN-----NRMI--QGTKFLLQDGDEIKIIWDKNNKFVIGFKVEI 148 (182)
T ss_dssp CEETT-----EECC--SSEEEECCTTBCCEEEEEGGGTEEEECCEEE
T ss_pred eEECC-----EEcC--CCcceEcCCCCEEEEEEcCCCCEEEEEEEEe
Confidence 99999 8886 467899999999999 76544454443
No 27
>1t15_A Breast cancer type 1 susceptibility protein; protein-peptide complex, antitumor protein; HET: SEP; 1.85A {Homo sapiens} SCOP: c.15.1.3 c.15.1.3 PDB: 1jnx_X* 1t29_A* 1t2v_A* 1y98_A* 3coj_X* 3k0h_A* 3k0k_A* 3pxe_A* 3pxb_A 3pxc_X 1t2u_A 1n5o_X 3pxa_A 3k15_A* 3k16_A* 3pxd_A 2ing_X 1oqa_A
Probab=99.53 E-value=4.3e-14 Score=136.30 Aligned_cols=185 Identities=12% Similarity=0.063 Sum_probs=125.8
Q ss_pred CeEEeecCccc--chhHHHHHHhcCCeecccccccceEEEEeccc-----cchhhHHHHHHcCCceechhHHHHHHhccC
Q 007803 125 PLILFVDSFQV--NAPLQEKVSSIGAFITSKFCQECTHILVQHHM-----RVKGELLDAIVAKKPLVDVSWLEVVAEKSI 197 (589)
Q Consensus 125 PlVl~~Ssl~~--~~~L~~~l~~LGg~vv~~ws~~cTHLV~~~s~-----r~T~KlL~ALi~gkpIVtp~wl~aLa~~~~ 197 (589)
.++++++++.. ...|.+.+.++||.++.+|+..|||||+. .. ++|.|+++|+..|++||+++|+.++.+.+.
T Consensus 4 ~~~~~~sg~~~~~~~~l~~~~~~~G~~~~~~~~~~~THli~~-~~~~~~~~rt~k~~~a~~~g~~IV~~~Wl~~~~~~~~ 82 (214)
T 1t15_A 4 RMSMVVSGLTPEEFMLVYKFARKHHITLTNLITEETTHVVMK-TDAEFVCERTLKYFLGIAGGKWVVSYFWVTQSIKERK 82 (214)
T ss_dssp CCEEEEESCCHHHHHHHHHHHHHHTCEECSSCCTTCCEEEEC-BCTTSEECCBHHHHHHHHTTCEEEETHHHHHHHHTTS
T ss_pred cEEEEECCCCHHHHHHHHHHHHHhCCEEeCccCCCCcEEEEe-CCcccchhhhHHHHHHHhcCCEEeCHHHHHHHHHCCC
Confidence 45666666543 26788999999999999999999999994 44 789999999999999999999999976542
Q ss_pred CCCCCCCCCCCCCCccCCCCccccCC----cCcccCcCCcEEEEcCCCcccchhhHHHHHHHcCceEEEeeecCCCCCCc
Q 007803 198 RTDFPGCNSHVTTLIMEGDPVELANV----DTLENCMRGYTFLLDSSMKYKYGDQLQSLLEVSGAKTLSIESFCPSSQDS 273 (589)
Q Consensus 198 ~~elPd~~dflPpl~ie~~~~~l~p~----~~R~~LF~G~TFIf~~~~qy~~~~~L~~lIe~aGGkvll~e~~~~~~~~~ 273 (589)
+.+++.|..+...........|. ..+..||+|++|++.........+.|..+|+.+||+++.... ...
T Consensus 83 ---~~~e~~y~~~~~~~~~~~~~~~~~~r~~~~~~lF~g~~~~~~~~~~~~~~~~l~~li~~~GG~v~~~~~--~~~--- 154 (214)
T 1t15_A 83 ---MLNEHDFEVRGDVVNGRNHQGPKRARESQDRKIFRGLEICCYGPFTNMPTDQLEWMVQLCGASVVKELS--SFT--- 154 (214)
T ss_dssp ---CCCGGGGBCCEETTTBTTCCHHHHHHTCTTSCTTTTCEEEECSCCSSSCHHHHHHHHHHTTCEECCSGG--GCC---
T ss_pred ---cCChHHeEeeccccccccccchhhHhhcCCCcccCCCEEEEEecCCCCCHHHHHHHHHHCCCEEecCcc--ccc---
Confidence 44566676543211000000111 135679999999997643322246899999999999875322 111
Q ss_pred cccccCe-EEEEeCCCChh--hHHHHHhhCCCCccchhHHHHHHHhCCC
Q 007803 274 ECVEHNS-VVYVLPRKSED--CSKSILKLSSLSRVNEKDLICAVLSGHL 319 (589)
Q Consensus 274 ~~g~~~~-vVlV~p~~w~~--~~~~~~~l~glR~I~e~E~l~AIL~~~l 319 (589)
..++.. ++++.+..|.. .+..++...+.+.|+..=|++.|..+.+
T Consensus 155 -~~~~~~~ivi~~~~~~~~~~~~~~~a~~~~~~iV~~~Wi~dsi~~~~~ 202 (214)
T 1t15_A 155 -LGTGVHPIVVVQPDAWTEDNGFHAIGQMCEAPVVTREWVLDSVALYQC 202 (214)
T ss_dssp -CSTTCCEEEEECGGGCSSCGGGGSSTTTCSSCEEEHHHHHHHHHHTSC
T ss_pred -cCCCCccEEEECCCcccchhhHHHHHHhcCCcEEeccHHHHhHhhcCc
Confidence 111223 44444444432 3333455668899999999999999864
No 28
>3oun_A Putative uncharacterized protein TB39.8; peptidoglycan, Ser/Thr kinase, pseudokinase, FHA domain, REG phosphorylation; HET: TPO; 2.71A {Mycobacterium tuberculosis}
Probab=99.53 E-value=2.3e-14 Score=135.30 Aligned_cols=76 Identities=34% Similarity=0.524 Sum_probs=66.6
Q ss_pred CCCeEEEecCCeEEEccCC-CCeeecCCCcccccceEEEEeecccCCcccCCCCCcccccEEEEEC-CccceEEeCcCCC
Q 007803 13 GEDKYYIFSKGNYKVGRKG-CDIIINKDKGVSRVHAEILVDEMISLNPFQDKSSKVSTTRVRIKDC-SKYGTFINKNLGS 90 (589)
Q Consensus 13 G~~~~~Ll~g~~YtIGRk~-cdIvI~~D~sISR~HA~I~v~~~~~~~~~~~~~~~~~~~~v~I~Dl-SknGTfVNg~~~~ 90 (589)
|..+.+.+....++|||.. |||+| +|+.|||.||+|.+... .|+|+|+ |+||||||+
T Consensus 75 g~g~~~~L~~~~~~IGR~~~~dI~L-~d~~VSr~HA~I~~~~~----------------~~~l~DlgStNGT~VNG---- 133 (157)
T 3oun_A 75 GSGRTYQLREGSNIIGRGQDAQFRL-PDTGVSRRHLEIRWDGQ----------------VALLADLNSTNGTTVNN---- 133 (157)
T ss_dssp TTCCEEECCSEEEEEESSTTCSEEC-CCTTSCTTCEEEEECSS----------------CEEEEECSCSSCCEETT----
T ss_pred CCCeEEEECCCcEEEEeCCCCCEEe-CCCCcChhHEEEEEECC----------------EEEEEECCCCCCeEECC----
Confidence 3456777888889999997 99999 78999999999999652 5999999 999999999
Q ss_pred ceeeeccCCceEEccCCCeEEEccC
Q 007803 91 KEKVHEFPNKEATLKDGDLVSFGTG 115 (589)
Q Consensus 91 ~ekI~~~~g~~~~L~~GD~I~fG~~ 115 (589)
++|. ++.|++||+|+||..
T Consensus 134 -~~i~-----~~~L~~GD~I~lG~~ 152 (157)
T 3oun_A 134 -APVQ-----EWQLADGDVIRLGHS 152 (157)
T ss_dssp -EECS-----EEECCTTCEEEETTE
T ss_pred -EECc-----eEECCCCCEEEECCE
Confidence 8884 789999999999963
No 29
>3hx1_A SLR1951 protein; P74513_SYNY3, adenylate cyclase-like protein, NESG, structural genomics, PSI-2, protein structure initiative; 2.50A {Synechocystis SP}
Probab=99.52 E-value=3.6e-14 Score=129.82 Aligned_cols=80 Identities=31% Similarity=0.422 Sum_probs=66.1
Q ss_pred CCeEEEecCCeEEEccCC-CCeeecCCCcccccceEEEEeecccCCcccCCCCCcccccEEEEEC------CccceEEeC
Q 007803 14 EDKYYIFSKGNYKVGRKG-CDIIINKDKGVSRVHAEILVDEMISLNPFQDKSSKVSTTRVRIKDC------SKYGTFINK 86 (589)
Q Consensus 14 ~~~~~Ll~g~~YtIGRk~-cdIvI~~D~sISR~HA~I~v~~~~~~~~~~~~~~~~~~~~v~I~Dl------SknGTfVNg 86 (589)
..+.+.+.+..|+|||.. |||+| +|+.|||.||+|.+.... .....|+|+|+ |+|||||||
T Consensus 21 ~~~~~~l~~~~~~IGR~~~~di~l-~d~~VSr~Ha~I~~~~~~-----------~g~~~~~l~Dl~~~~~~S~NGT~vNg 88 (131)
T 3hx1_A 21 GRREVLLTETFYTIGRSPRADIRI-KSQFVSRIHAVLVRKSSD-----------DVQAAYRIIDGDEDGQSSVNGLMING 88 (131)
T ss_dssp EEEEEEECSSEEEEESSTTSSEEC-CCSSSCTTCEEEEEC-----------------CCEEEEESCTTSCCCSSCEEETT
T ss_pred CcEEEEECCCCEEECCCCCCCEEE-CCCCcChhheEEEEEccC-----------CCceEEEEEECCCCCCCCCCceEECC
Confidence 357788888999999997 99999 789999999999987421 01125999998 999999999
Q ss_pred cCCCceeeeccCCceEEccCCCeEEEccC
Q 007803 87 NLGSKEKVHEFPNKEATLKDGDLVSFGTG 115 (589)
Q Consensus 87 ~~~~~ekI~~~~g~~~~L~~GD~I~fG~~ 115 (589)
+++. .+.|++||+|+||..
T Consensus 89 -----~~i~-----~~~L~~GD~I~iG~~ 107 (131)
T 3hx1_A 89 -----KKVQ-----EHIIQTGDEIVMGPQ 107 (131)
T ss_dssp -----EEES-----EEECCTTCEEECSTT
T ss_pred -----EEeE-----eEECCCCCEEEECCE
Confidence 8885 499999999999964
No 30
>3al2_A DNA topoisomerase 2-binding protein 1; BRCT domain, protein binding, DNA binding protein; HET: DNA MSE; 2.00A {Homo sapiens} PDB: 3al3_A*
Probab=99.51 E-value=2.7e-14 Score=142.47 Aligned_cols=180 Identities=18% Similarity=0.197 Sum_probs=118.1
Q ss_pred CeEEeecCccc--chhHHHHHHhcCCeecc--cccccceEEEEeccccchhhHHHHHHcCCceechhHHHHHHhccCCCC
Q 007803 125 PLILFVDSFQV--NAPLQEKVSSIGAFITS--KFCQECTHILVQHHMRVKGELLDAIVAKKPLVDVSWLEVVAEKSIRTD 200 (589)
Q Consensus 125 PlVl~~Ssl~~--~~~L~~~l~~LGg~vv~--~ws~~cTHLV~~~s~r~T~KlL~ALi~gkpIVtp~wl~aLa~~~~~~e 200 (589)
..++++|++.. ...|.+.+..|||.++. +|...|||||+ +...+|.|+|+|+++|++||+++|+.++.+.+.
T Consensus 9 ~~~~~~Sg~~~~~~~~l~~~i~~LGg~~~~~~~~~~~~THlV~-~~~~RT~K~l~aia~G~wIvs~~wl~~s~~~g~--- 84 (235)
T 3al2_A 9 QYIFQLSSLNPQERIDYCHLIEKLGGLVIEKQCFDPTCTHIVV-GHPLRNEKYLASVAAGKWVLHRSYLEACRTAGH--- 84 (235)
T ss_dssp CCEEEEESCCHHHHHHHHHHHHHTTCEECCSSSCCTTCCEEEE-SSCCCSHHHHHHHHTTCEEECTHHHHHHHHHTS---
T ss_pred CEEEEEcCCCHHHHHHHHHHHHHcCCEEeccCCCCCCCcEEEE-CCCCCCHHHHHHHHcCCcCccHHHHHHHHHcCC---
Confidence 34455555443 26788999999999986 69899999999 588899999999999999999999999976642
Q ss_pred CCCCCCCCCCCcc-----CCCCc-----cccCCcCc------------ccCcCCcEEEEcCCCcccchhhHHHHHHHcCc
Q 007803 201 FPGCNSHVTTLIM-----EGDPV-----ELANVDTL------------ENCMRGYTFLLDSSMKYKYGDQLQSLLEVSGA 258 (589)
Q Consensus 201 lPd~~dflPpl~i-----e~~~~-----~l~p~~~R------------~~LF~G~TFIf~~~~qy~~~~~L~~lIe~aGG 258 (589)
|.++++|.-.... ...+. ..+|...| ..||.|+.|+++... ...+.|+.+|++|||
T Consensus 85 ~l~E~~ye~~~~~~~d~~~~~~~~~~~l~~a~~r~R~~l~~~~~~g~~~~lF~g~~v~l~~~~--~~~~~l~~ii~agGg 162 (235)
T 3al2_A 85 FVQEEDYEWGSSSILDVLTGINVQQRRLALAAMRWRKKIQQRQESGIVEGAFSGWKVILHVDQ--SREAGFKRLLQSGGA 162 (235)
T ss_dssp CCCSGGGBTTSHHHHTTCTTSCHHHHHHHHHHHHHHHHHHHHHTTTCCSSTTTTCEEEEECCH--HHHHHHHHHHHHTTC
T ss_pred CCChhceeecCcchhccccCCChhhhHHHHHHHHHHHHHHhcccccccCCCCCCcEEEEecCC--CcHHHHHHHHHcCCc
Confidence 5667777533321 01111 11221111 589999999887753 223689999999999
Q ss_pred eEEEeeecCCCCCCccccccCeEEEEeC-CCChh----hHHHHHhhCCCCccchhHHHHHHHhCC
Q 007803 259 KTLSIESFCPSSQDSECVEHNSVVYVLP-RKSED----CSKSILKLSSLSRVNEKDLICAVLSGH 318 (589)
Q Consensus 259 kvll~e~~~~~~~~~~~g~~~~vVlV~p-~~w~~----~~~~~~~l~glR~I~e~E~l~AIL~~~ 318 (589)
+++.... +.. +-+..+ .+|.. .-|.+ .| ..+...|.+.+...=|++.|+.+.
T Consensus 163 ~vl~~~~--~~~----~~~~t~-~~vd~~~~~~~~~~~~~-~~~~~~~i~~v~~ewlld~i~~~~ 219 (235)
T 3al2_A 163 KVLPGHS--VPL----FKEATH-LFSDLNKLKPDDSGVNI-AEAAAQNVYCLRTEYIADYLMQES 219 (235)
T ss_dssp EECSSCC--GGG----GGGCSE-EEECC--------CCCH-HHHHHTTCEEEETHHHHHHHHCSS
T ss_pred EEecCCC--CCc----cccCce-EEEecccCCccchhHHH-HHHHHcCCcEEcHHHHHHHHhcCC
Confidence 9973221 111 111222 33321 11111 23 334557899998888888888864
No 31
>1g3g_A Protien kinase SPK1; FHA domain, RAD53, phosphopeptide, phosphoprotein, transferase; NMR {Saccharomyces cerevisiae} SCOP: b.26.1.2 PDB: 1j4o_A 1j4p_A* 1j4q_A* 1k3j_A 1k3n_A* 1k3q_A* 2a0t_A* 2jqi_A*
Probab=99.51 E-value=4.7e-14 Score=133.59 Aligned_cols=91 Identities=25% Similarity=0.347 Sum_probs=70.8
Q ss_pred eeEEeeCCCCCCCCeEEEecC-----------CeEEEccCC-CCeeecCCC-cccccceEEEEeecccCCcccCCCCCcc
Q 007803 2 VWGLFPIDPLPGEDKYYIFSK-----------GNYKVGRKG-CDIIINKDK-GVSRVHAEILVDEMISLNPFQDKSSKVS 68 (589)
Q Consensus 2 MW~L~~~~~~~G~~~~~Ll~g-----------~~YtIGRk~-cdIvI~~D~-sISR~HA~I~v~~~~~~~~~~~~~~~~~ 68 (589)
+|.|....+.. ....+.+.. ..|+|||.. |||+| +|+ .|||.||.|.+...
T Consensus 33 ~~~L~v~~G~~-~g~~~~l~~~~v~~~~~~~~~~~~IGR~~~~di~l-~d~~~vSr~Ha~I~~~~~-------------- 96 (164)
T 1g3g_A 33 VCRVICTTGQI-PIRDLSADISQVLKEKRSIKKVWTFGRNPACDYHL-GNISRLSNKHFQILLGED-------------- 96 (164)
T ss_dssp CEEEECSSSSS-CCEEECCCHHHHHHCSSSCCEEEEEESSSSSSEEC-CCCTTTTSSCEEEEECST--------------
T ss_pred cEEEEEecCCC-CCeEEEeccccccccccccCCcEEECCCCCCCEEe-CCcCCcChhHEEEEECCC--------------
Confidence 57776654322 234444443 389999997 99999 565 69999999999631
Q ss_pred cccEEEEECCccceEEeCcCCCceeeeccCCceEEccCCCeEEEccCC
Q 007803 69 TTRVRIKDCSKYGTFINKNLGSKEKVHEFPNKEATLKDGDLVSFGTGN 116 (589)
Q Consensus 69 ~~~v~I~DlSknGTfVNg~~~~~ekI~~~~g~~~~L~~GD~I~fG~~~ 116 (589)
..|+|+|+|+||||||| +++. ++.++.|++||+|+||...
T Consensus 97 -g~~~l~DlS~NGT~vNg-----~~i~--~~~~~~L~~GD~I~iG~~~ 136 (164)
T 1g3g_A 97 -GNLLLNDISTNGTWLNG-----QKVE--KNSNQLLSQGDEITVGVGV 136 (164)
T ss_dssp -TCEEEEECCSSCEEETT-----EEEC--TTEEEECCTTCEEEESCSS
T ss_pred -CCEEEEECCCCCeEECC-----EEcC--CCCceEcCCCCEEEECCCC
Confidence 15999999999999999 8886 4678999999999999854
No 32
>1wln_A Afadin; beta sandwich, FHA domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: b.26.1.2
Probab=99.48 E-value=1e-13 Score=124.60 Aligned_cols=81 Identities=19% Similarity=0.354 Sum_probs=67.6
Q ss_pred CeEEEecCCeEEEccC---CCCeeecCCCcccccceEEEEeecccCCcccCCCCCcccccEEEEEC-CccceEEeCcCCC
Q 007803 15 DKYYIFSKGNYKVGRK---GCDIIINKDKGVSRVHAEILVDEMISLNPFQDKSSKVSTTRVRIKDC-SKYGTFINKNLGS 90 (589)
Q Consensus 15 ~~~~Ll~g~~YtIGRk---~cdIvI~~D~sISR~HA~I~v~~~~~~~~~~~~~~~~~~~~v~I~Dl-SknGTfVNg~~~~ 90 (589)
...|.+....++|||. .|||+| +++.|||.||.|.+... .|+|+|+ |+|||||||
T Consensus 28 ~~~~~L~~~~~~IGr~r~~~~di~l-~~~~vSr~Ha~i~~~~~----------------~~~l~dl~S~ngt~vNg---- 86 (120)
T 1wln_A 28 PKLYRLQLSVTEVGTEKFDDNSIQL-FGPGIQPHHCDLTNMDG----------------VVTVTPRSMDAETYVDG---- 86 (120)
T ss_dssp CCEEECCSEEEECSSSCCSTTCCCC-CCTTCCSSCEEEEESSS----------------CEEEEESCSSSCEEETS----
T ss_pred cEEEEECCCCEEECCCCCCCCcEEE-CCCCCchhheEEEEcCC----------------EEEEEECCCCCCEEECC----
Confidence 5667777888999973 399999 78999999999998642 5999999 999999999
Q ss_pred ceeeeccCCceEEccCCCeEEEccCCccccee
Q 007803 91 KEKVHEFPNKEATLKDGDLVSFGTGNATYRFC 122 (589)
Q Consensus 91 ~ekI~~~~g~~~~L~~GD~I~fG~~~~~frl~ 122 (589)
++|. .++.|++||+|+||.. ..|+|.
T Consensus 87 -~~i~----~~~~L~~GD~I~iG~~-~~~~f~ 112 (120)
T 1wln_A 87 -QRIS----ETTMLQSGMRLQFGTS-HVFKFV 112 (120)
T ss_dssp -CBCS----SCEEECTTCEEEETTT-EEEEEE
T ss_pred -EEcC----CCEECCCCCEEEECCc-eEEEEE
Confidence 8885 5789999999999963 345554
No 33
>1g6g_A Protein kinase RAD53; beta-sandwich, phosphopeptide complex, cell cycle; HET: TPO; 1.60A {Saccharomyces cerevisiae} SCOP: b.26.1.2
Probab=99.47 E-value=1.3e-13 Score=125.08 Aligned_cols=70 Identities=31% Similarity=0.529 Sum_probs=61.0
Q ss_pred eEEEccCC-CCeeecCCC-cccccceEEEEeecccCCcccCCCCCcccccEEEEECCccceEEeCcCCCceeeeccCCce
Q 007803 24 NYKVGRKG-CDIIINKDK-GVSRVHAEILVDEMISLNPFQDKSSKVSTTRVRIKDCSKYGTFINKNLGSKEKVHEFPNKE 101 (589)
Q Consensus 24 ~YtIGRk~-cdIvI~~D~-sISR~HA~I~v~~~~~~~~~~~~~~~~~~~~v~I~DlSknGTfVNg~~~~~ekI~~~~g~~ 101 (589)
.++|||.. |||+| +|+ .|||.||.|.++.. ..|+|+|+|+||||||+ +++. ++++
T Consensus 37 ~~~IGR~~~~di~l-~~~~~vSr~Ha~i~~~~~---------------g~~~l~DlS~NGT~vNg-----~~l~--~~~~ 93 (127)
T 1g6g_A 37 VWTFGRNPACDYHL-GNISRLSNKHFQILLGED---------------GNLLLNDISTNGTWLNG-----QKVE--KNSN 93 (127)
T ss_dssp EEEEESSTTSSEEC-CSCTTSCSSCEEEEECTT---------------SCEEEEECCSSCCEETT-----EECC--TTCC
T ss_pred CEEECCCCCCCEEe-CCCCCCChhHeEEEECCC---------------CcEEEEECCcCCeEECC-----EEcC--CCCe
Confidence 89999997 99999 565 69999999999531 15999999999999999 8886 4678
Q ss_pred EEccCCCeEEEccCC
Q 007803 102 ATLKDGDLVSFGTGN 116 (589)
Q Consensus 102 ~~L~~GD~I~fG~~~ 116 (589)
+.|++||+|+||...
T Consensus 94 ~~L~~Gd~I~lG~~~ 108 (127)
T 1g6g_A 94 QLLSQGDEITVGVGV 108 (127)
T ss_dssp EECCTTCEEEECTTS
T ss_pred EEcCCCCEEEECCCc
Confidence 999999999999764
No 34
>2nte_A BARD-1, BRCA1-associated ring domain protein 1; BRCT, ring finger, zinc-binding protein, ubiquitin LI antitumor protein; 1.90A {Homo sapiens} PDB: 3fa2_A 2r1z_A
Probab=99.47 E-value=7.4e-14 Score=135.53 Aligned_cols=134 Identities=18% Similarity=0.208 Sum_probs=99.6
Q ss_pred CeEEeecCccc--chhHHHHHHhcCCeecccccccceEEEEecc--ccchhhHHHHHHcCCceechhHHHHHHhccCCCC
Q 007803 125 PLILFVDSFQV--NAPLQEKVSSIGAFITSKFCQECTHILVQHH--MRVKGELLDAIVAKKPLVDVSWLEVVAEKSIRTD 200 (589)
Q Consensus 125 PlVl~~Ssl~~--~~~L~~~l~~LGg~vv~~ws~~cTHLV~~~s--~r~T~KlL~ALi~gkpIVtp~wl~aLa~~~~~~e 200 (589)
+++++++++.. ...|.+.+.++||.++.+|...|||||+. . ..+|.|+|+|+..|++||+++|++++.+.+.
T Consensus 2 ~~vi~~sg~~~~~~~~l~~~~~~~G~~~~~~~~~~~THlV~~-~~~~~rt~K~l~a~~~g~~IV~~~Wl~~c~~~~~--- 77 (210)
T 2nte_A 2 PLVLIGSGLSSEQQKMLSELAVILKAKKYTEFDSTVTHVVVP-GDAVQSTLKCMLGILNGCWILKFEWVKACLRRKV--- 77 (210)
T ss_dssp CCEEEESSCCHHHHHHHHHHHHHTTCEEESSCCTTCCEEEES-SSSCCCSHHHHHHHHTTCEEEETHHHHHHHHHTS---
T ss_pred CEEEEECCCCHHHHHHHHHHHHHcCCEEeCCCCCCCeEEEEc-CCCcchHHHHHHHHhcCCEEecHHHHHHHHHcCC---
Confidence 56777776644 27789999999999999999999999993 4 6999999999999999999999999976542
Q ss_pred CCCCCCCCCCCccCCCCccccCCcCcccCcCCcEEEEcCCCcccchhhHHHHHHHcCceEEEee
Q 007803 201 FPGCNSHVTTLIMEGDPVELANVDTLENCMRGYTFLLDSSMKYKYGDQLQSLLEVSGAKTLSIE 264 (589)
Q Consensus 201 lPd~~dflPpl~ie~~~~~l~p~~~R~~LF~G~TFIf~~~~qy~~~~~L~~lIe~aGGkvll~e 264 (589)
+.++++|..+..... ..+.....+..||+|++|++.........+.|+.+|+++||+++...
T Consensus 78 ~~~e~~y~~~~~~~~--~r~~~~~~~~~lF~g~~~~l~~~~~~~~~~~l~~lI~~~GG~v~~~~ 139 (210)
T 2nte_A 78 CEQEEKYEIPEGPRR--SRLNREQLLPKLFDGCYFYLWGTFKHHPKDNLIKLVTAGGGQILSRK 139 (210)
T ss_dssp CCCGGGTBCTTHHHH--HHHHHHTTCCCTTTTCEEEECSCCSSSCHHHHHHHHHHTTCEEESSC
T ss_pred cCChhhccCCCCChh--hhhccccccccccCceEEEEeccCCCCCHHHHHHHHHHCCCEEEecC
Confidence 456777775521000 00000112468999999999864221223699999999999998543
No 35
>4ejq_A Kinesin-like protein KIF1A; homodimer, FHA domain, transport protein; 1.89A {Homo sapiens} PDB: 2eh0_A 2g1l_A
Probab=99.46 E-value=1.9e-13 Score=128.38 Aligned_cols=91 Identities=25% Similarity=0.401 Sum_probs=71.8
Q ss_pred CCCCCCCeEEEecCCeEEEccCC----CCeeecCCCcccccceEEEEeecccCCcccCCCCCcccccEEEEEC-CccceE
Q 007803 9 DPLPGEDKYYIFSKGNYKVGRKG----CDIIINKDKGVSRVHAEILVDEMISLNPFQDKSSKVSTTRVRIKDC-SKYGTF 83 (589)
Q Consensus 9 ~~~~G~~~~~Ll~g~~YtIGRk~----cdIvI~~D~sISR~HA~I~v~~~~~~~~~~~~~~~~~~~~v~I~Dl-SknGTf 83 (589)
|++..+.-+|.+..+.++|||.+ |||+| .++.|||.||.|.+.... ....+++.|+ |.||||
T Consensus 47 Dp~ls~~lvy~L~~g~t~IGR~~~~~~~DI~L-~~~~Vs~~H~~i~~~~~~------------~~~~~~~~d~~S~ngt~ 113 (154)
T 4ejq_A 47 DPLMSECLLYYIKDGITRVGREDGERRQDIVL-SGHFIKEEHCVFRSDSRG------------GSEAVVTLEPCEGADTY 113 (154)
T ss_dssp CTTCSSEEEEECCSEEEEEECSSCSSCCSEEC-CCTTCCSEEEEEEEECTT------------SSSCEEEEEECTTCCEE
T ss_pred CcccCceEEEEeCCCCEEEcCCCCCCCCCEEE-CCCCcccccEEEEEecCC------------CceeEEEEecCCCCceE
Confidence 33345567888999999999974 99999 799999999999997631 1124666676 999999
Q ss_pred EeCcCCCceeeeccCCceEEccCCCeEEEccCCccccee
Q 007803 84 INKNLGSKEKVHEFPNKEATLKDGDLVSFGTGNATYRFC 122 (589)
Q Consensus 84 VNg~~~~~ekI~~~~g~~~~L~~GD~I~fG~~~~~frl~ 122 (589)
||| ++|. .++.|++||+|.||.. ..|+|.
T Consensus 114 VNG-----~~i~----~~~~L~~GD~I~~G~~-~~Frf~ 142 (154)
T 4ejq_A 114 VNG-----KKVT----EPSILRSGNRIIMGKS-HVFRFN 142 (154)
T ss_dssp ETT-----EECC----SCEECCTTCEEEETTT-EEEEEE
T ss_pred ECC-----EEcC----CceECCCCCEEEECCc-EEEEEc
Confidence 999 8885 6789999999999963 245554
No 36
>3u3z_A Microcephalin; DNA repair, cell cycle regulation, cell cycle; HET: SEP PTR; 1.50A {Homo sapiens} PDB: 3szm_A* 3t1n_A* 3sht_A 3shv_A*
Probab=99.41 E-value=3.1e-13 Score=131.38 Aligned_cols=169 Identities=12% Similarity=0.130 Sum_probs=112.8
Q ss_pred CeEEeecCccc--chhHHHHHHhcCC-eecccccccceEEEEeccccchhhHHHHHHcCCceechhHHHHHHhccCCCCC
Q 007803 125 PLILFVDSFQV--NAPLQEKVSSIGA-FITSKFCQECTHILVQHHMRVKGELLDAIVAKKPLVDVSWLEVVAEKSIRTDF 201 (589)
Q Consensus 125 PlVl~~Ssl~~--~~~L~~~l~~LGg-~vv~~ws~~cTHLV~~~s~r~T~KlL~ALi~gkpIVtp~wl~aLa~~~~~~el 201 (589)
+.+++++++.. +..|.+.+..||| .++.++.+.|||||+ ....+|.|+|.|++.|++||+++|++++.+.+. |
T Consensus 11 ~~~~~~sgl~~~~~~~l~~~i~~lgG~~~~~~~~~~~THlv~-~~~~rT~K~l~ai~~g~~Iv~~~Wv~~~~~~g~---~ 86 (199)
T 3u3z_A 11 TRTLVMTSMPSEKQNVVIQVVDKLKGFSIAPDVCETTTHVLS-GKPLRTLNVLLGIARGCWVLSYDWVLWSLELGH---W 86 (199)
T ss_dssp CCEEEEESCCHHHHHHHHHHHHHHCSCEEESSCCTTEEEEEE-SSCCCBHHHHHHHHTTCEEEETHHHHHHHHHTS---C
T ss_pred CeEEEEcCCCHHHHHHHHHHHHHcCCcEEecCCCCCCeEEEE-CCCCCCHHHHHHHHCCCcEEeHHHHHHHhhCCC---C
Confidence 34555555544 3678899999987 566889999999999 567899999999999999999999999976542 5
Q ss_pred CCCCCCCCCCccC-CCCcc----ccCCcCcccCcCCcEEEE-cCCCcccchhhHHHHHHHcCceEEEeeecCCCCCCccc
Q 007803 202 PGCNSHVTTLIME-GDPVE----LANVDTLENCMRGYTFLL-DSSMKYKYGDQLQSLLEVSGAKTLSIESFCPSSQDSEC 275 (589)
Q Consensus 202 Pd~~dflPpl~ie-~~~~~----l~p~~~R~~LF~G~TFIf-~~~~qy~~~~~L~~lIe~aGGkvll~e~~~~~~~~~~~ 275 (589)
.++++|.-+.... ..... ......+..||+|+.|+| .+...+. .+.|..+|+++||+++....
T Consensus 87 l~e~~y~~~~~~~~~~~~rl~r~~~~~~~~~~LF~g~~~~~v~~~~~~~-~~~L~~lI~~~GG~v~~~~~---------- 155 (199)
T 3u3z_A 87 ISEEPFELSHHFPAAPLCRSECHLSAGPYRGTLFADQPVMFVSPASSPP-VAKLCELVHLCGGRVSQVPR---------- 155 (199)
T ss_dssp CCSGGGBCTTTCTHHHHHHHHHHHCSSSCCCCTTTTSCCEEECTTCSSC-HHHHHHHHHHTTCCBCSSGG----------
T ss_pred CChhhccccCCccccccchhhhhhhcccccchhhCCCeEEEECCCCCCC-HHHHHHHHHHcCCEEeccCC----------
Confidence 6677776443211 00000 112344679999996545 4433332 37899999999999863211
Q ss_pred cccCeEEEEeCCCChhhHHHHHhhCCCCccchhHHHHHHHhCC
Q 007803 276 VEHNSVVYVLPRKSEDCSKSILKLSSLSRVNEKDLICAVLSGH 318 (589)
Q Consensus 276 g~~~~vVlV~p~~w~~~~~~~~~l~glR~I~e~E~l~AIL~~~ 318 (589)
... ++|.+... ....+...|.+.=|++-|..+.
T Consensus 156 --~~~-iiI~~~~~-------~~~~~~~~V~p~Wi~DsI~~~~ 188 (199)
T 3u3z_A 156 --QAS-IVIGPYSG-------KKKATVKYLSEKWVLDSITQHK 188 (199)
T ss_dssp --GCS-EEESCCCS-------CCCTTCEEECHHHHHHHHHHTS
T ss_pred --CCE-EEEeCCch-------hccCCCcEEChhHHHHHHHcCC
Confidence 111 33433111 1234566777777777777764
No 37
>1kzy_C Tumor suppressor P53-binding protein 1; tandem-BRCT and linker complexed with non-BRCT protein, three-helix bundle, parallel beta sheet; 2.50A {Homo sapiens} SCOP: c.15.1.4 c.15.1.4 PDB: 1gzh_B
Probab=99.39 E-value=5.1e-12 Score=127.57 Aligned_cols=175 Identities=12% Similarity=0.150 Sum_probs=123.6
Q ss_pred hhHHHHHHhcCCeeccccccc------ceEEEEeccccchhhHHHHHHcCCceechhHHHHHHhccCCCCCCCCCCCCCC
Q 007803 137 APLQEKVSSIGAFITSKFCQE------CTHILVQHHMRVKGELLDAIVAKKPLVDVSWLEVVAEKSIRTDFPGCNSHVTT 210 (589)
Q Consensus 137 ~~L~~~l~~LGg~vv~~ws~~------cTHLV~~~s~r~T~KlL~ALi~gkpIVtp~wl~aLa~~~~~~elPd~~dflPp 210 (589)
..|++.+.++||.++.++... +||||+ +...+|.|.++||..|.|||+++|+.++...+. +.++..|+.+
T Consensus 61 ~~l~~~I~~~GG~v~~~~~~~~~~~~~~t~LIa-~~~~rt~K~l~ala~g~~iVs~~Wl~dc~~~~~---~l~~~~Y~l~ 136 (259)
T 1kzy_C 61 QYTESQLRAGAGYILEDFNEAQCNTAYQCLLIA-DQHCRTRKYFLCLASGIPCVSHVWVHDSCHANQ---LQNYRNYLLP 136 (259)
T ss_dssp HHHHHHHHTTTCEECSSCCTTTTTTTCEEEEEE-SSCCCSHHHHHHHHHTCCEEETHHHHHHHHHTS---CCCGGGSBCC
T ss_pred HHHHHHHHHCCCEEecCccccccccCCCeEEEc-CCCCCcHHHHHHHhcCCCCccHHHHHHHHHcCC---cCCHHHccCC
Confidence 789999999999999988754 689999 478999999999999999999999999876542 4557778766
Q ss_pred CccCCCCccccCCcCcccCcCCcEEEEcCCCcccchhhHHHHHHHcCceEEEeeecCCCCCCcccc-ccCeEEEEeCCCC
Q 007803 211 LIMEGDPVELANVDTLENCMRGYTFLLDSSMKYKYGDQLQSLLEVSGAKTLSIESFCPSSQDSECV-EHNSVVYVLPRKS 289 (589)
Q Consensus 211 l~ie~~~~~l~p~~~R~~LF~G~TFIf~~~~qy~~~~~L~~lIe~aGGkvll~e~~~~~~~~~~~g-~~~~vVlV~p~~w 289 (589)
.......-.+...+.|..||+|++|+++......+.+.+..+++++||+++..-. ...+..+.. ....+|++-. .-
T Consensus 137 ~g~s~~~~~~~~~~~~~~LF~G~~I~i~~~~~~~~~~~~~~Il~~~Ga~vv~~~~--s~~~~~d~~~~~~~viv~d~-~~ 213 (259)
T 1kzy_C 137 AGYSLEEQRILDWQPRENPFQNLKVLLVSDQQQNFLELWSEILMTGGAASVKQHH--SSAHNKDIALGVFDVVVTDP-SC 213 (259)
T ss_dssp CEEETTTTEEECCCCCCCTTTTCEEEEEESCTTTTHHHHHHHHHHTTCSEEEEEE--SSSSCCCSCGGGCSEEEECT-TC
T ss_pred CCcccccchhhhccccCCCCCCeEEEEecCCCCCHHHHHHHHHHhcCCEEEeccc--cchhhhhccCCCCeEEEECC-CC
Confidence 5321111112223346899999999998776544556788899999999885533 111111111 1233444422 22
Q ss_pred hhhHHHHHhhCCCCccchhHHHHHHHhCC
Q 007803 290 EDCSKSILKLSSLSRVNEKDLICAVLSGH 318 (589)
Q Consensus 290 ~~~~~~~~~l~glR~I~e~E~l~AIL~~~ 318 (589)
..+....+...+.+.|+..=|+..|+.|.
T Consensus 214 ~~~~~~~a~~~~i~iVs~EWv~~sI~~~~ 242 (259)
T 1kzy_C 214 PASVLKCAEALQLPVVSQEWVIQCLIVGE 242 (259)
T ss_dssp CHHHHHHHHHHTCCEECHHHHHHHHHHTS
T ss_pred hHHHHHHHHhcCCCEecHHHHHHHHHhCC
Confidence 23445677777899999888899999986
No 38
>3fm8_A Kinesin-like protein KIF13B; kinesin, GAP, GTPase activation, structural genomics consort ATP-binding, cytoskeleton, microtubule, motor protein, NUCL binding; 2.30A {Homo sapiens} PDB: 3mdb_A*
Probab=99.39 E-value=1e-12 Score=119.58 Aligned_cols=83 Identities=22% Similarity=0.313 Sum_probs=67.9
Q ss_pred CCCeEEEecCCeEEEccCC-CCeeecCCCcccccceEEEEeecccCCcccCCCCCcccccEEEEECCccceEEeCcCCCc
Q 007803 13 GEDKYYIFSKGNYKVGRKG-CDIIINKDKGVSRVHAEILVDEMISLNPFQDKSSKVSTTRVRIKDCSKYGTFINKNLGSK 91 (589)
Q Consensus 13 G~~~~~Ll~g~~YtIGRk~-cdIvI~~D~sISR~HA~I~v~~~~~~~~~~~~~~~~~~~~v~I~DlSknGTfVNg~~~~~ 91 (589)
.+..+|.+.+ ..+|||.. |||+| .+..|||.||.|..... ..++|+|++.|||||||
T Consensus 39 s~~l~y~L~~-~t~IGR~~~~DI~L-~~~~Vs~~Ha~I~~~~~---------------g~~~l~dl~~ngt~VNG----- 96 (124)
T 3fm8_A 39 NELLVYYLKE-HTLIGSANSQDIQL-CGMGILPEHCIIDITSE---------------GQVMLTPQKNTRTFVNG----- 96 (124)
T ss_dssp SCCCEEECCS-EEEEESSTTCSEEC-CSTTCCSSCEEEEECTT---------------SCEEEEECTTCCEEETT-----
T ss_pred CceEEEECCC-CeEECCCCCCCEEE-CCCCeecceEEEEECCC---------------CeEEEEECCCCCEEECC-----
Confidence 3456666665 48999997 99999 78999999999998531 15899999889999999
Q ss_pred eeeeccCCceEEccCCCeEEEccCCccccee
Q 007803 92 EKVHEFPNKEATLKDGDLVSFGTGNATYRFC 122 (589)
Q Consensus 92 ekI~~~~g~~~~L~~GD~I~fG~~~~~frl~ 122 (589)
++|. .++.|++||+|.||.. ..|||.
T Consensus 97 ~~V~----~~~~L~~GD~I~lG~~-~~FrFn 122 (124)
T 3fm8_A 97 SSVS----SPIQLHHGDRILWGNN-HFFRLN 122 (124)
T ss_dssp EECC----SCEEECTTCEEEETTT-EEEEEE
T ss_pred EEcC----CcEECCCCCEEEECCC-eEEEEE
Confidence 8885 6899999999999964 356664
No 39
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=99.38 E-value=8e-13 Score=139.87 Aligned_cols=80 Identities=28% Similarity=0.446 Sum_probs=67.9
Q ss_pred CeEEEecCCeEEEccCC-CCeeecCCCcccccceEEEEeecccCCcccCCCCCcccccEEEEEC-CccceEEeCcCCCce
Q 007803 15 DKYYIFSKGNYKVGRKG-CDIIINKDKGVSRVHAEILVDEMISLNPFQDKSSKVSTTRVRIKDC-SKYGTFINKNLGSKE 92 (589)
Q Consensus 15 ~~~~Ll~g~~YtIGRk~-cdIvI~~D~sISR~HA~I~v~~~~~~~~~~~~~~~~~~~~v~I~Dl-SknGTfVNg~~~~~e 92 (589)
.+.+.+....++|||.. |||+| +|++|||.||.|.+... .|+|+|+ |+||||||| +
T Consensus 298 g~~~~l~~~~~~iGR~~~~di~l-~~~~vSr~Ha~i~~~~~----------------~~~l~Dl~S~nGt~vng-----~ 355 (388)
T 2ff4_A 298 GRGYPLQAAATRIGRLHDNDIVL-DSANVSRHHAVIVDTGT----------------NYVINDLRSSNGVHVQH-----E 355 (388)
T ss_dssp CCEEECCSSEEEEESSTTSSEEC-CCTTSCTTCEEEEECSS----------------CEEEEECSCSSCCEETT-----E
T ss_pred CcEEEECCCCEEEecCCCCeEEE-CCCccChhHeEEEEECC----------------EEEEEECCCCCCeEECC-----E
Confidence 35666777899999997 99999 78999999999998642 5999999 999999999 8
Q ss_pred eeeccCCceEEccCCCeEEEccCCccccee
Q 007803 93 KVHEFPNKEATLKDGDLVSFGTGNATYRFC 122 (589)
Q Consensus 93 kI~~~~g~~~~L~~GD~I~fG~~~~~frl~ 122 (589)
++. .++.|++||+|+||. ..|+|.
T Consensus 356 ~i~----~~~~L~~gd~i~~G~--~~~~~~ 379 (388)
T 2ff4_A 356 RIR----SAVTLNDGDHIRICD--HEFTFQ 379 (388)
T ss_dssp ECS----SEEEECTTCEEEETT--EEEEEE
T ss_pred ECC----CceECCCCCEEEECC--EEEEEE
Confidence 884 689999999999996 344444
No 40
>3kt9_A Aprataxin; FHA domain, beta sandwich, beta sheet, AMP hydrolase, alternative splicing, disease mutation, DNA damage, DNA repair, DNA-binding; 1.65A {Homo sapiens} SCOP: b.26.1.0
Probab=99.23 E-value=3.7e-11 Score=105.89 Aligned_cols=98 Identities=18% Similarity=0.208 Sum_probs=80.2
Q ss_pred Cee--EEeeCCCCCCCCeEEEecCCeEEEccCC-CCeeecCCCcccccceEEEEeecccCCcccCCCCCcccccEEEEEC
Q 007803 1 MVW--GLFPIDPLPGEDKYYIFSKGNYKVGRKG-CDIIINKDKGVSRVHAEILVDEMISLNPFQDKSSKVSTTRVRIKDC 77 (589)
Q Consensus 1 mMW--~L~~~~~~~G~~~~~Ll~g~~YtIGRk~-cdIvI~~D~sISR~HA~I~v~~~~~~~~~~~~~~~~~~~~v~I~Dl 77 (589)
||+ .|.+.++ +-..+.|-++...+|||.. +.| .|+.+||+|++|.++... ..++|+|+
T Consensus 1 ~~~~c~L~~~~~--~~~~I~L~~g~~v~iGR~p~t~I---~DkrcSR~h~~L~~~~~~--------------g~v~vk~l 61 (102)
T 3kt9_A 1 MMRVCWLVRQDS--RHQRIRLPHLEAVVIGRGPETKI---TDKKCSRQQVQLKAECNK--------------GYVKVKQV 61 (102)
T ss_dssp CCCEEEEEETTS--TTCEEECCBTCEEEECSSTTTCC---CCTTSCSSCEEEEEETTT--------------TEEEEEEC
T ss_pred CcceEEEEecCC--CCCcEEcCCCCcEEeccCCcccc---ccCcccCcceEEEEecCC--------------CEEEEEEC
Confidence 777 5677652 3367888889999999998 654 589999999999998631 26899999
Q ss_pred CccceEEeCcCCCceeeeccCCceEEccCCCeEEEccCCcccceecC
Q 007803 78 SKYGTFINKNLGSKEKVHEFPNKEATLKDGDLVSFGTGNATYRFCYA 124 (589)
Q Consensus 78 SknGTfVNg~~~~~ekI~~~~g~~~~L~~GD~I~fG~~~~~frl~~~ 124 (589)
+.|+||||+ .++. ++..+.|++||+|.+-.....|+|.|.
T Consensus 62 g~Np~~vng-----~~l~--k~~~~~L~~GD~l~Ll~~~~~~~v~f~ 101 (102)
T 3kt9_A 62 GVNPTSIDS-----VVIG--KDQEVKLQPGQVLHMVNELYPYIVEFE 101 (102)
T ss_dssp SSSCCEETT-----EECC--BTCEEEECTTCCEEEETTEEEEEEEEE
T ss_pred cCCCCeECC-----EEcC--CCCeEEeCCCCEEEEccCCceEEEEec
Confidence 999999999 6665 589999999999999887777877763
No 41
>3uv0_A Mutator 2, isoform B; FHA, protein binding, dimerization; 1.90A {Drosophila melanogaster}
Probab=99.14 E-value=6.6e-11 Score=103.48 Aligned_cols=82 Identities=22% Similarity=0.361 Sum_probs=67.8
Q ss_pred CCCCeEEEecCCeEEEccCC-CCeeecCCCcccccceEEEEeecccCCcccCCCCCcccccEEEEECCccce-EEeCcCC
Q 007803 12 PGEDKYYIFSKGNYKVGRKG-CDIIINKDKGVSRVHAEILVDEMISLNPFQDKSSKVSTTRVRIKDCSKYGT-FINKNLG 89 (589)
Q Consensus 12 ~G~~~~~Ll~g~~YtIGRk~-cdIvI~~D~sISR~HA~I~v~~~~~~~~~~~~~~~~~~~~v~I~DlSknGT-fVNg~~~ 89 (589)
.|.....|.++..|.|||.. |++.| +|++|||.||+|..... + .+.+. |+||| ||||
T Consensus 10 ~~~p~v~l~~~~~~rIGR~~~~~l~L-ddpsVs~~HAti~~~~~-------G--------~~~l~--S~nGtVFVNG--- 68 (102)
T 3uv0_A 10 GGLPAILLKADTIYRIGRQKGLEISI-ADESMELAHATACILRR-------G--------VVRLA--ALVGKIFVND--- 68 (102)
T ss_dssp TTSCCEECCTTCCEEEESSTTSTEEC-CCTTSCTTCEEEEEEET-------T--------EEEEE--ESSSCEEETT---
T ss_pred CCcccEEeecCcEEEEcCCCCCcEEE-CCcccccceEEEEecCC-------c--------eEEEE--eccCcEEECC---
Confidence 36678888899999999997 99999 89999999999999763 1 24433 99995 9999
Q ss_pred CceeeeccCCceEEccCCCe------EEEccCCcccce
Q 007803 90 SKEKVHEFPNKEATLKDGDL------VSFGTGNATYRF 121 (589)
Q Consensus 90 ~~ekI~~~~g~~~~L~~GD~------I~fG~~~~~frl 121 (589)
+|+ +++.|.+||. ++||.-...+++
T Consensus 69 --qrv-----~~~~I~~gDtI~g~v~lrFGnvea~l~~ 99 (102)
T 3uv0_A 69 --QEE-----TVVDIGMENAVAGKVKLRFGNVEARLEF 99 (102)
T ss_dssp --EEE-----SEEEECGGGCBTTEEEEEETTEEEEEEE
T ss_pred --EEe-----eeEEccCCcccccEEEEEecCEEEEEEe
Confidence 888 3899999998 999976555554
No 42
>3i6u_A CDS1, serine/threonine-protein kinase CHK2; Ser/Thr protein kinase, FHA domain, ATP-binding, cell cycle, mutation, LI-fraumeni syndrome, magnesium; 3.00A {Homo sapiens} PDB: 3i6w_A
Probab=99.03 E-value=4.5e-10 Score=118.64 Aligned_cols=92 Identities=23% Similarity=0.350 Sum_probs=72.6
Q ss_pred e-EEeeCCCCCCCCeEEEecCCeEEEccCC-CCeeecCCCcc---------cccceEEEEeecccCCcccCCCCCccccc
Q 007803 3 W-GLFPIDPLPGEDKYYIFSKGNYKVGRKG-CDIIINKDKGV---------SRVHAEILVDEMISLNPFQDKSSKVSTTR 71 (589)
Q Consensus 3 W-~L~~~~~~~G~~~~~Ll~g~~YtIGRk~-cdIvI~~D~sI---------SR~HA~I~v~~~~~~~~~~~~~~~~~~~~ 71 (589)
| .|.+.. ++...+.+....|+|||.. ||+++ +|+.| ||+||.|.+.... .....
T Consensus 10 ~g~l~~~~---~~~~~~~l~~~~~~iGR~~~~~~~~-~~~~~~~~~~~~~vS~~H~~i~~~~~~-----------~~~~~ 74 (419)
T 3i6u_A 10 WARLWALQ---DGFANLECVNDNYWFGRDKSCEYCF-DEPLLKRTDKYRTYSKKHFRIFREVGP-----------KNSYI 74 (419)
T ss_dssp SEEEEECS---SSSCCEEECSSEEEEESSTTSSEET-TCTTGGGCSGGGGSCTTCEEEECCEET-----------TTEEC
T ss_pred ceEeeecC---CCCCceEecCCCEEecCCCccCEEE-CCcccccccccccccccceEEEEEcCC-----------CCceE
Confidence 6 555544 3345678889999999987 99999 67655 9999999876421 22346
Q ss_pred EEEEECCccceEEeCcCCCceeeeccCCceEEccCCCeEEEccCC
Q 007803 72 VRIKDCSKYGTFINKNLGSKEKVHEFPNKEATLKDGDLVSFGTGN 116 (589)
Q Consensus 72 v~I~DlSknGTfVNg~~~~~ekI~~~~g~~~~L~~GD~I~fG~~~ 116 (589)
++|+|.|.||||||+ +++. ++....|.+||.|+||...
T Consensus 75 ~~i~D~S~nGt~vn~-----~~~~--~~~~~~l~~~d~i~~~~~~ 112 (419)
T 3i6u_A 75 AYIEDHSGNGTFVNT-----ELVG--KGKRRPLNNNSEIALSLSR 112 (419)
T ss_dssp CEEEECCSSCEEETT-----EECC--TTCEEECCTTEEEEESSTT
T ss_pred EEEEECCcCCceECc-----cccc--CCCcccCCCCCEeeeeccc
Confidence 899999999999999 7765 5778899999999999765
No 43
>4egx_A Kinesin-like protein KIF1A; FHA domain, transport protein; 2.51A {Homo sapiens}
Probab=98.91 E-value=4.8e-09 Score=101.24 Aligned_cols=92 Identities=27% Similarity=0.454 Sum_probs=72.4
Q ss_pred CCCCCCCeEEEecCCeEEEccCC----CCeeecCCCcccccceEEEEeecccCCcccCCCCCcccccEEEEECCccceEE
Q 007803 9 DPLPGEDKYYIFSKGNYKVGRKG----CDIIINKDKGVSRVHAEILVDEMISLNPFQDKSSKVSTTRVRIKDCSKYGTFI 84 (589)
Q Consensus 9 ~~~~G~~~~~Ll~g~~YtIGRk~----cdIvI~~D~sISR~HA~I~v~~~~~~~~~~~~~~~~~~~~v~I~DlSknGTfV 84 (589)
|++..+--+|.|..+..+|||.+ |||+| ....|++.||.|+..... .....++|..++.++|||
T Consensus 77 Dp~ls~~l~y~L~~g~t~VGr~~~~~~~dI~L-~G~~I~~~Hc~i~~~~~~-----------~~~~~vtl~p~~~a~t~V 144 (184)
T 4egx_A 77 DPLMSECLLYYIKDGITRVGREDGERRQDIVL-SGHFIKEEHCVFRSDSRG-----------GSEAVVTLEPCEGADTYV 144 (184)
T ss_dssp CTTCSSCSEEECCSEEEEEECSSSSSCCSEEC-CSTTCCSEEEEEEEECCS-----------SCSCEEEEEECTTCCEEE
T ss_pred CcccCceEEEEECCCcCcCCCCCcCCCCeEEE-CccccccccEEEEEcCCC-----------CceEEEEEeeCCCCeEEE
Confidence 33334567777888889999974 89999 788999999999987531 112368899998899999
Q ss_pred eCcCCCceeeeccCCceEEccCCCeEEEccCCccccee
Q 007803 85 NKNLGSKEKVHEFPNKEATLKDGDLVSFGTGNATYRFC 122 (589)
Q Consensus 85 Ng~~~~~ekI~~~~g~~~~L~~GD~I~fG~~~~~frl~ 122 (589)
|| .+|. .++.|++||+|.||.. ..|||.
T Consensus 145 NG-----~~I~----~~~~L~~GDrI~lG~~-h~Frfn 172 (184)
T 4egx_A 145 NG-----KKVT----EPSILRSGNRIIMGKS-HVFRFN 172 (184)
T ss_dssp TT-----EECC----SCEECCTTCEEEETTT-EEEEEE
T ss_pred cC-----EEcc----ccEEcCCCCEEEECCC-CEEEEC
Confidence 99 8885 6899999999999964 356664
No 44
>3olc_X DNA topoisomerase 2-binding protein 1; BRCT domain, DNA repair, RAD9, DNA binding protein; HET: DNA; 2.40A {Homo sapiens} PDB: 2xnk_A* 2xnh_A*
Probab=98.85 E-value=2.2e-08 Score=103.06 Aligned_cols=173 Identities=14% Similarity=0.152 Sum_probs=120.2
Q ss_pred ccceecCCeEEeecCccc--chhHHHHHHhcCCeecccccccceEEEEeccccchhhHHHHHHcCCceechhHHHHHHhc
Q 007803 118 TYRFCYAPLILFVDSFQV--NAPLQEKVSSIGAFITSKFCQECTHILVQHHMRVKGELLDAIVAKKPLVDVSWLEVVAEK 195 (589)
Q Consensus 118 ~frl~~~PlVl~~Ssl~~--~~~L~~~l~~LGg~vv~~ws~~cTHLV~~~s~r~T~KlL~ALi~gkpIVtp~wl~aLa~~ 195 (589)
.|.....-+++|++++.. ...|.+.+..+||.++.+++..|||||+ .-..|+|...|+..|+|||+++||.++...
T Consensus 101 ~y~~~l~g~~~~~tG~~~~~r~~l~~~i~~~GG~v~~~~t~~tTHLI~--~~~~t~Ky~~A~~~gi~IV~~~Wl~~c~~~ 178 (298)
T 3olc_X 101 VYNMVMSDVTISCTSLEKEKREEVHKYVQMMGGRVYRDLNVSVTHLIA--GEVGSKKYLVAANLKKPILLPSWIKTLWEK 178 (298)
T ss_dssp BCCCTTTTCEEEEESCCHHHHHHHHHHHHHTTCEECSSCCTTCCEEEE--SSSCSHHHHHHHHTTCCEECHHHHHHHHHH
T ss_pred ccccccCCeEEEeCCCcHHhHHHHHHHHHHCCCEEecCcCCCeeEEEE--eCCCChHHHHHHHCCCeEeeHHHHHHHHHc
Confidence 445555666777765433 3788899999999999999999999999 456799999999999999999999998644
Q ss_pred cCCCCCCCCCCCCCCCccCCCCccccCCcCcccCcCCcEEEEcCCCcccchhhHHHHHHHcCceEEEeeecCCCCCCccc
Q 007803 196 SIRTDFPGCNSHVTTLIMEGDPVELANVDTLENCMRGYTFLLDSSMKYKYGDQLQSLLEVSGAKTLSIESFCPSSQDSEC 275 (589)
Q Consensus 196 ~~~~elPd~~dflPpl~ie~~~~~l~p~~~R~~LF~G~TFIf~~~~qy~~~~~L~~lIe~aGGkvll~e~~~~~~~~~~~ 275 (589)
+... +...|.+ +...+-+..+|+|++|++..-...+ .+.|+.+|+..||++... ++..
T Consensus 179 ~~~~---~~~~~~~----------~~~~~~~~~~f~g~~i~~tG~~~~~-r~~l~~li~~~GG~~~~~--ls~~------ 236 (298)
T 3olc_X 179 SQEK---KITRYTD----------INMEDFKCPIFLGCIICVTGLCGLD-RKEVQQLTVKHGGQYMGQ--LKMN------ 236 (298)
T ss_dssp HHTT---CCSSGGG----------SCGGGGBCCTTTTCEEEECSCCHHH-HHHHHHHHHHTTCEECSS--CCTT------
T ss_pred CCcC---Ccccccc----------cccccccccccCCeEEEEeCCCCcc-HHHHHHHHHHcCCEEece--ecCC------
Confidence 3211 1111210 1113456789999999998765543 468999999999997411 1100
Q ss_pred cccCeEEEEeCCCChhhHHHHHhhCCCCccchhHHHHHHHhCC
Q 007803 276 VEHNSVVYVLPRKSEDCSKSILKLSSLSRVNEKDLICAVLSGH 318 (589)
Q Consensus 276 g~~~~vVlV~p~~w~~~~~~~~~l~glR~I~e~E~l~AIL~~~ 318 (589)
... .||........+ ..+...|.+.|++..|.+-|..|.
T Consensus 237 -~~T--HLI~~~~~g~K~-~~A~~~gi~IV~~~Wl~dsi~~g~ 275 (298)
T 3olc_X 237 -ECT--HLIVQEPKGQKY-ECAKRWNVHCVTTQWFFDSIEKGF 275 (298)
T ss_dssp -TCC--EEECSSSCSHHH-HHHHHTTCEEECHHHHHHHHHHTS
T ss_pred -Cce--EEEEeCCCchHH-HHHHHCCCeEEeHHHHHHHHHCCC
Confidence 012 233222223334 344556899999999999999874
No 45
>2brf_A Bifunctional polynucleotide phosphatase/kinase; hydrolase/transferase, FHA, forkhead-associated, PNKP, PNK, polynucleotide kinase 3' phosphatase; 1.40A {Homo sapiens} SCOP: b.26.1.2 PDB: 2w3o_A* 1yjm_A*
Probab=98.80 E-value=1.4e-08 Score=90.51 Aligned_cols=87 Identities=18% Similarity=0.252 Sum_probs=67.0
Q ss_pred CCeEEEe--cCCeEEEccCCCCeeecCCCcccccceEEEEeecccCCcccCCCCCcccccEEEEECCccceEEeCcCCCc
Q 007803 14 EDKYYIF--SKGNYKVGRKGCDIIINKDKGVSRVHAEILVDEMISLNPFQDKSSKVSTTRVRIKDCSKYGTFINKNLGSK 91 (589)
Q Consensus 14 ~~~~~Ll--~g~~YtIGRk~cdIvI~~D~sISR~HA~I~v~~~~~~~~~~~~~~~~~~~~v~I~DlSknGTfVNg~~~~~ 91 (589)
+..-..| .++..+|||.. ..-| .|+.+||+|++|.++... ..+.|+|++.|++++|+
T Consensus 18 ~~~~I~Lp~~~g~~viGR~p-~t~I-~DkrcSR~hv~L~ad~~~--------------~~v~vk~lG~Np~~vng----- 76 (110)
T 2brf_A 18 EAPPIFLPSDGQALVLGRGP-LTQV-TDRKCSRTQVELVADPET--------------RTVAVKQLGVNPSTTGT----- 76 (110)
T ss_dssp SSCCEECCSTTCCEEECSBT-TTTB-CCTTSCSSCEEEEEETTT--------------TEEEEEECSSSCCEEC------
T ss_pred CCCcEEeccCCCCEEEcCCC-Cccc-ccccceeeeEEEEEecCC--------------CEEEEEEcccCCcEECC-----
Confidence 3334444 36999999998 2225 689999999999998641 26899999999999999
Q ss_pred eeeeccCCceEEccCCCeEEEccCCcccceec
Q 007803 92 EKVHEFPNKEATLKDGDLVSFGTGNATYRFCY 123 (589)
Q Consensus 92 ekI~~~~g~~~~L~~GD~I~fG~~~~~frl~~ 123 (589)
.++. +++.+.|++||.|.|=.....|++.|
T Consensus 77 ~~l~--k~~~~~L~~GD~leLl~g~y~~~v~f 106 (110)
T 2brf_A 77 QELK--PGLEGSLGVGDTLYLVNGLHPLTLRW 106 (110)
T ss_dssp CBCC--TTCEEEEETTCEEEEETTEEEEEEEE
T ss_pred EEcC--CCCEEEecCCCEEEEccCCeEEEEEe
Confidence 6665 69999999999999854445566665
No 46
>1yj5_C 5' polynucleotide kinase-3' phosphatase FHA domai; beta sandwich, P-loop, transferase; 2.80A {Mus musculus} SCOP: b.26.1.2
Probab=98.71 E-value=4e-08 Score=90.93 Aligned_cols=88 Identities=17% Similarity=0.265 Sum_probs=70.8
Q ss_pred eEEEe-cCCeEEEccCCCCeeecCCCcccccceEEEEeecccCCcccCCCCCcccccEEEEECCccceEEeCcCCCceee
Q 007803 16 KYYIF-SKGNYKVGRKGCDIIINKDKGVSRVHAEILVDEMISLNPFQDKSSKVSTTRVRIKDCSKYGTFINKNLGSKEKV 94 (589)
Q Consensus 16 ~~~Ll-~g~~YtIGRk~cdIvI~~D~sISR~HA~I~v~~~~~~~~~~~~~~~~~~~~v~I~DlSknGTfVNg~~~~~ekI 94 (589)
.+.|- .++..+|||.. ...| .|+.+||+|++|.++.. ...+.|++++.|+|+||+ .++
T Consensus 21 ~I~Lp~~~g~vvIGRgP-et~I-tDkRcSR~qv~L~ad~~--------------~g~V~Vk~lG~NP~~vng-----~~L 79 (143)
T 1yj5_C 21 PIFLPSDGQALVLGRGP-LTQV-TDRKCSRNQVELIADPE--------------SRTVAVKQLGVNPSTVGV-----HEL 79 (143)
T ss_dssp CEECCTTTCEEEECSBT-TTTB-CCSSSCSSCEEEEEETT--------------TTEEEEEECSSSCCEETT-----EEC
T ss_pred cEEeccCCCCEEEcCCC-cccc-ccccccceeEEEEEecC--------------CCeEEEEEcccCCcEECC-----EEe
Confidence 34443 46999999998 3335 68999999999999863 126899999999999999 666
Q ss_pred eccCCceEEccCCCeEEEccCCcccceecCCe
Q 007803 95 HEFPNKEATLKDGDLVSFGTGNATYRFCYAPL 126 (589)
Q Consensus 95 ~~~~g~~~~L~~GD~I~fG~~~~~frl~~~Pl 126 (589)
. ++..+.|++||.|.|=.....|+|.|.+.
T Consensus 80 ~--k~~~~~L~~GD~LeLl~g~y~f~V~f~e~ 109 (143)
T 1yj5_C 80 K--PGLSGSLSLGDVLYLVNGLYPLTLRWEEL 109 (143)
T ss_dssp C--TTCEEEECTTCEEESSSSCSEEEEEEEEC
T ss_pred c--CCCEEEecCCCEEEEecCCceEEEEecCC
Confidence 5 69999999999999876667788888553
No 47
>2vxb_A DNA repair protein RHP9; BRCT, nucleus, cell cycle, DNA damage, DNA replication inhibitor, phosphoprotein, checkpoint signalling; HET: DNA; 2.3A {Schizosaccharomyces pombe} PDB: 2vxc_A*
Probab=98.68 E-value=1e-07 Score=95.20 Aligned_cols=164 Identities=11% Similarity=0.061 Sum_probs=105.4
Q ss_pred chhHHHHHHhcCCeeccc-----c--cc-------------------cceEEEEeccccchhhHHHHHHcCCceechhHH
Q 007803 136 NAPLQEKVSSIGAFITSK-----F--CQ-------------------ECTHILVQHHMRVKGELLDAIVAKKPLVDVSWL 189 (589)
Q Consensus 136 ~~~L~~~l~~LGg~vv~~-----w--s~-------------------~cTHLV~~~s~r~T~KlL~ALi~gkpIVtp~wl 189 (589)
...|.+.+.+.||.++.+ + .. ..||||+ +...+|+|.++|+..|.|||+++|+
T Consensus 21 k~~L~~~I~~~GG~v~~~g~~~lf~~~~~~~~~~~~~~k~~~~~~~~~~t~lia-~~~~rt~K~~~ala~gipiV~~~Wi 99 (241)
T 2vxb_A 21 RSALETVVQDHGGLVLDTGLRPLFNDPFKSKQKKLRHLKPQKRSKSWNQAFVVS-DTFSRKVKYLEALAFNIPCVHPQFI 99 (241)
T ss_dssp HHHHHHHHHHTTCEECTTCSGGGBCCSCC----CCCSCCBCGGGGGCSEEEEEC-SSCCCCHHHHHHHHHTCCEECTHHH
T ss_pred HHHHHHHHHHCCCEEecCcchhhccCccccccccccccccccccccccceEEEc-CCCCCcHHHHHHHHcCCCEecHHHH
Confidence 388999999999999886 1 11 2499999 4788999999999999999999999
Q ss_pred HHHHhccCCCCCCCCCCCCCCCcc--CCCC------ccccCC-------cCcccCcCCcEEEEcCCCccc----------
Q 007803 190 EVVAEKSIRTDFPGCNSHVTTLIM--EGDP------VELANV-------DTLENCMRGYTFLLDSSMKYK---------- 244 (589)
Q Consensus 190 ~aLa~~~~~~elPd~~dflPpl~i--e~~~------~~l~p~-------~~R~~LF~G~TFIf~~~~qy~---------- 244 (589)
.++...+. +.++.+|+.+... .... ..|.+. ..|..||.|++++++......
T Consensus 100 ~dc~~~~~---~~~~~~ylL~~~~s~~~~~~~~~~~~~~~~~~~l~~~~~~~~~Lf~g~~i~~~~~~~~~~~~~~~~~~~ 176 (241)
T 2vxb_A 100 KQCLKMNR---VVDFSPYLLASGYSHRLDCTLSQRIEPFDTTDSLYDRLLARKGPLFGKKILFIIPEAKSWQKKIENTEQ 176 (241)
T ss_dssp HHHHHHTS---CCCSGGGBBEEEEETTTTEEEECCCCCCCTTSCHHHHHHHCCCTTTTCEEEECCCC------------C
T ss_pred HHHHHcCC---cCChhhccCCCCcchhccchhhccccCCChhhHHHHHHhhcCcCCCCcEEEEEeCCCcccccccccccc
Confidence 99976542 3456677765421 1111 112221 356799999999997643210
Q ss_pred --chhhHHHHHHHcCceEEEeeecCCCCCCccccccCeEEEEeCCCChhhHHHHHhhCCCCccchhHHHHHHHhCC
Q 007803 245 --YGDQLQSLLEVSGAKTLSIESFCPSSQDSECVEHNSVVYVLPRKSEDCSKSILKLSSLSRVNEKDLICAVLSGH 318 (589)
Q Consensus 245 --~~~~L~~lIe~aGGkvll~e~~~~~~~~~~~g~~~~vVlV~p~~w~~~~~~~~~l~glR~I~e~E~l~AIL~~~ 318 (589)
.-+.+..+++++||++ ...+.... ....+|++.... .....+.+.|...=|++-|+.|.
T Consensus 177 g~~~~~~~~i~~~~Ga~~---~~v~~~~~-----~~~d~v~~~~~~-------~~~~~~~~iV~~eWv~~~i~~g~ 237 (241)
T 2vxb_A 177 GQKALAHVYHALALGADV---EIRPNVAH-----LECDLILTMDGN-------IVDETNCPVVDPEWIVECLISQS 237 (241)
T ss_dssp HHHHHHHHHHHHHTTCEE---ECCSCCSS-----CCCSEEECSSSC-------CCSSCSSCEECHHHHHHHHHHTS
T ss_pred cchHHHHHHHHHHcCCce---eccccccc-----CCccEEEECCcc-------ccccCCCCEecHHHHHHHHHhce
Confidence 0147889999999998 22111110 112233332221 13445677777666666666654
No 48
>1ujx_A Polynucleotide kinase 3'-phosphatase; DNA repair, FHA domain, beta-sandwich, antiparallel beta-sheets, phosphopeptide binding motif; NMR {Mus musculus} SCOP: b.26.1.2
Probab=98.65 E-value=2.4e-08 Score=90.07 Aligned_cols=81 Identities=17% Similarity=0.250 Sum_probs=66.2
Q ss_pred CCeEEEccCCCCeeecCCCcccccceEEEEeecccCCcccCCCCCcccccEEEEECCccceEEeCcCCCceeeeccCCce
Q 007803 22 KGNYKVGRKGCDIIINKDKGVSRVHAEILVDEMISLNPFQDKSSKVSTTRVRIKDCSKYGTFINKNLGSKEKVHEFPNKE 101 (589)
Q Consensus 22 g~~YtIGRk~cdIvI~~D~sISR~HA~I~v~~~~~~~~~~~~~~~~~~~~v~I~DlSknGTfVNg~~~~~ekI~~~~g~~ 101 (589)
.+..+|||.. ...| .|+.+||+|++|.++... ..+.|+++..|+|+||+ .++. +++.
T Consensus 35 ~g~~viGRgp-~t~I-~DkrcSR~qv~L~ad~~~--------------~~v~vk~lG~NP~~vng-----~~l~--k~~~ 91 (119)
T 1ujx_A 35 GQALVLGRGP-LTQV-TDRKCSRNQVELIADPES--------------RTVAVKQLGVNPSTVGV-----QELK--PGLS 91 (119)
T ss_dssp SCCEEESBBT-TTTB-CCTTSCTTSEEEEEETTT--------------TEEEEEECSSSCCBSSS-----SBCC--TTCE
T ss_pred CCCEEEcCCC-Cccc-ccccccceeEEEEEecCC--------------CEEEEEEcccCCcEECC-----EEec--CCCE
Confidence 6899999998 2235 789999999999998731 26899999999999999 6665 6899
Q ss_pred EEccCCCeEEEccCCcccceecCC
Q 007803 102 ATLKDGDLVSFGTGNATYRFCYAP 125 (589)
Q Consensus 102 ~~L~~GD~I~fG~~~~~frl~~~P 125 (589)
+.|++||.|.|=.....|+|.|.+
T Consensus 92 ~~L~~GD~l~Ll~g~y~~~v~f~~ 115 (119)
T 1ujx_A 92 GSLSLGDVLYLVNGLYPLTLRWSG 115 (119)
T ss_dssp EEEETTCCCBCBTTBSCCEEEECC
T ss_pred EEecCCCEEEEecCCeEEEEEecc
Confidence 999999999876555667777754
No 49
>4a0e_A YSCD, type III secretion protein; transport protein, SAD phasing, type III secretion system; 2.04A {Yersinia pestis} PDB: 4d9v_A
Probab=98.57 E-value=1.2e-07 Score=86.15 Aligned_cols=84 Identities=20% Similarity=0.247 Sum_probs=66.6
Q ss_pred eEEeeCCCCCCCCeEEEecCCeEEEccCC--CCeeecCCCcccccceEEEEeecccCCcccCCCCCcccccEEEEECCcc
Q 007803 3 WGLFPIDPLPGEDKYYIFSKGNYKVGRKG--CDIIINKDKGVSRVHAEILVDEMISLNPFQDKSSKVSTTRVRIKDCSKY 80 (589)
Q Consensus 3 W~L~~~~~~~G~~~~~Ll~g~~YtIGRk~--cdIvI~~D~sISR~HA~I~v~~~~~~~~~~~~~~~~~~~~v~I~DlSkn 80 (589)
|.|........ ..-+.+++..|+||..+ |||+| .|+.|||.||+|.+... .|.|+ -|+|
T Consensus 5 ~klrvlsG~~~-G~~l~L~~~~~~IGs~~~~~DLvL-~D~~Vs~~H~~L~~~~~----------------g~~L~-~s~n 65 (123)
T 4a0e_A 5 WVCRFYQGKHR-GVEVELPHGRCVFGSDPLQSDIVL-SDSEIAPVHLVLMVDEE----------------GIRLT-DSAE 65 (123)
T ss_dssp EEEEECSGGGT-TCEEEECSEEEEEESCTTTCSEEC-CCTTSCSSCEEEEEETT----------------EEEEE-EESS
T ss_pred EEEEEecCCCC-CcEEEcCCCcEEECCCCCCCCEEE-eCCCccceeEEEEECCC----------------eEEEE-eccC
Confidence 77765543322 34555668899999995 99999 79999999999999763 47776 5999
Q ss_pred ceEEeCcCCCceeeeccCCceEEccCCCeEEEcc
Q 007803 81 GTFINKNLGSKEKVHEFPNKEATLKDGDLVSFGT 114 (589)
Q Consensus 81 GTfVNg~~~~~ekI~~~~g~~~~L~~GD~I~fG~ 114 (589)
|||+|+ +++. ....|..|..|.+|.
T Consensus 66 gt~vdG-----~~v~----~~~~L~~g~~l~lG~ 90 (123)
T 4a0e_A 66 PLLQEG-----LPVP----LGTLLRAGSCLEVGF 90 (123)
T ss_dssp CCEETT-----EECC----TTCBCCTTSCEEETT
T ss_pred CEEECC-----EEcc----cccccCCCCEEEEcc
Confidence 999999 7775 233899999999995
No 50
>3l3e_A DNA topoisomerase 2-binding protein 1; BRCT domain, DNA repair, cell cycle checkpoints, acetylation, cytoplasm, cytoskeleton, DNA damage; HET: DNA; 1.26A {Homo sapiens} PDB: 3pd7_A* 3jve_A*
Probab=98.31 E-value=1.3e-06 Score=76.24 Aligned_cols=71 Identities=20% Similarity=0.144 Sum_probs=58.2
Q ss_pred hhHHHHHHhcCCeecccccccceEEEEec-cccchhhHHHHHHcCCceechhHHHHHHhccCCCCCCCCCCCCCC
Q 007803 137 APLQEKVSSIGAFITSKFCQECTHILVQH-HMRVKGELLDAIVAKKPLVDVSWLEVVAEKSIRTDFPGCNSHVTT 210 (589)
Q Consensus 137 ~~L~~~l~~LGg~vv~~ws~~cTHLV~~~-s~r~T~KlL~ALi~gkpIVtp~wl~aLa~~~~~~elPd~~dflPp 210 (589)
..|++.+.++||.+..+++..|||||+.. ....+.|+..|...|.+||+++||.++...+. +-++.+|.|.
T Consensus 32 ~~l~~li~~~Gg~v~~~~s~~~THlI~~~~~~~~~~K~~~A~~~gi~IV~~~Wl~~c~~~~~---~l~e~~Y~~~ 103 (107)
T 3l3e_A 32 SELNGIAASLGADYRRSFDETVTHFIYQGRPNDTNREYKSVKERGVHIVSEHWLLDCAQECK---HLPESLYPHT 103 (107)
T ss_dssp HHHHHHHHHTTCEEESSCCTTCCEEECCCCTTCCCHHHHHHHHTTCEEECHHHHHHHHHHTS---CCCGGGCCTT
T ss_pred HHHHHHHHHcCCEEeccccCCceEEEecCCCCCCCHHHHHHHHCCCeEecHHHHHHHHHhCC---CCchhhCCCC
Confidence 78899999999999999999999999932 23568999999999999999999999976542 3446666554
No 51
>3t7k_A RTT107, regulator of TY1 transposition protein 107; BRCT, DNA repair, phospho-peptide, protein binding; HET: SEP; 2.03A {Saccharomyces cerevisiae} PDB: 3t7j_A* 3t7i_A
Probab=98.25 E-value=1e-06 Score=88.44 Aligned_cols=132 Identities=11% Similarity=0.078 Sum_probs=90.9
Q ss_pred eEEeecCc-cc-chhHHHHHHhcCCeecccccc--cceEEEEeccccchhhHHHHHHcC--CceechhHHHHHHhc---c
Q 007803 126 LILFVDSF-QV-NAPLQEKVSSIGAFITSKFCQ--ECTHILVQHHMRVKGELLDAIVAK--KPLVDVSWLEVVAEK---S 196 (589)
Q Consensus 126 lVl~~Ssl-~~-~~~L~~~l~~LGg~vv~~ws~--~cTHLV~~~s~r~T~KlL~ALi~g--kpIVtp~wl~aLa~~---~ 196 (589)
.++|++.. .. ...=++.|..||++++.+... .|+|+++ |++.+|+|+|.||+.+ ++||+|+|+.++... +
T Consensus 24 ~ai~TGc~~~~~~~~D~~~Lr~LGI~Iv~d~~~~~~~n~LiA-PkilRT~KFL~sLa~~P~~~il~p~FI~~~Lk~ih~~ 102 (256)
T 3t7k_A 24 KAVCTGCFHDGFNEVDIEILNQLGIKIFDNIKETDKLNCIFA-PKILRTEKFLKSLSFEPLKFALKPEFIIDLLKQIHSK 102 (256)
T ss_dssp EEEESSSCSSCCCHHHHHHHHHTTEEECSSCCGGGCCCEEEC-SSCCCBHHHHHHTTSTTCCEEECTHHHHHHHHHHC--
T ss_pred EEEecCCcccccCHHHHHHHHHcCeEEEecCcccCCCCEEEc-CchhhHHHHHHHhccCccceEeCHHHHHHHHHHhhcC
Confidence 35555543 21 122247899999999998853 7999999 8999999999999996 349999999988644 2
Q ss_pred ---CCCCCCCCCCCCCCCccCCCCccccCCcCcccCcCCc---EEEEcCCCcccchhhHHHHHHHcCceEEE
Q 007803 197 ---IRTDFPGCNSHVTTLIMEGDPVELANVDTLENCMRGY---TFLLDSSMKYKYGDQLQSLLEVSGAKTLS 262 (589)
Q Consensus 197 ---~~~elPd~~dflPpl~ie~~~~~l~p~~~R~~LF~G~---TFIf~~~~qy~~~~~L~~lIe~aGGkvll 262 (589)
....+|++++|.-+.... ..+.-...+.+||+|+ ++-+++.-. --.+.++.++++-||+-+.
T Consensus 103 ~~~~~~~~l~~~dY~L~d~~~---E~l~r~~~~gkLf~~~~I~ciNls~dI~-GG~e~issIleahG~~~~~ 170 (256)
T 3t7k_A 103 KDKLSQININLFDYEINGINE---SIISKTKLPTKVFERANIRCINLVNDIP-GGVDTIGSVLKAHGIEKIN 170 (256)
T ss_dssp -----CCCCCSSTTBCTTCCH---HHHHHTTSSSCHHHHTTCCEEEEETTCT-TCHHHHHHHHHHTTCCEEE
T ss_pred CcccccccCChhhccCCCcch---hHHhhhccccccccCCcceeeeeccCCC-CCHHHHHHHHHHcCCceee
Confidence 234588999997443211 0111144467999999 444455443 2336889999999997543
No 52
>2d8m_A DNA-repair protein XRCC1; parallel beta-sheet, DNA ligase III, poly(ADP-ribose) polymerase-1, DNA polymerase beta, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.18 E-value=7.6e-06 Score=74.02 Aligned_cols=83 Identities=12% Similarity=0.189 Sum_probs=64.5
Q ss_pred CCeEEeecCccc--chhHHHHHHhcCCeecccccccceEEEEeccccchhhHHHHHHcCCceechhHHHHHHhccCCCCC
Q 007803 124 APLILFVDSFQV--NAPLQEKVSSIGAFITSKFCQECTHILVQHHMRVKGELLDAIVAKKPLVDVSWLEVVAEKSIRTDF 201 (589)
Q Consensus 124 ~PlVl~~Ssl~~--~~~L~~~l~~LGg~vv~~ws~~cTHLV~~~s~r~T~KlL~ALi~gkpIVtp~wl~aLa~~~~~~el 201 (589)
.-+++|++.... ...|+..+..+||.+..+++..|||||+ ....+.|+..|+..|.|||+++||.++...+. +
T Consensus 24 ~g~~i~itG~~~~~r~~l~~~i~~~Gg~v~~~~s~~~ThLI~--~~~~~~K~~~A~~~gi~IV~~~Wl~d~~~~~~---~ 98 (129)
T 2d8m_A 24 QGVVVVLSGFQNPFRSELRDKALELGAKYRPDWTRDSTHLIC--AFANTPKYSQVLGLGGRIVRKEWVLDCHRMRR---R 98 (129)
T ss_dssp TTEEEEEESCCTTHHHHHHHHHHHTTEEEESSCCTTCCEEEE--SSSSCHHHHHHHHHTCEEEETHHHHHHHHTTS---C
T ss_pred CCeEEEEeCCCcHHHHHHHHHHHHcCCEEeCCcCCCCeEEEe--cCCCChHHHHHHHCCCcEecHHHHHHHHHhCC---c
Confidence 344455543222 3788999999999999999999999999 46779999999999999999999999876532 3
Q ss_pred CCCCCCCCCC
Q 007803 202 PGCNSHVTTL 211 (589)
Q Consensus 202 Pd~~dflPpl 211 (589)
.++..|+.+.
T Consensus 99 l~e~~Y~l~~ 108 (129)
T 2d8m_A 99 LPSQRYLMAG 108 (129)
T ss_dssp CCGGGGBCSS
T ss_pred CChHhcccCC
Confidence 4466676554
No 53
>2cou_A ECT2 protein; BRCT domain, RHO GTPase, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=98.08 E-value=1.3e-06 Score=77.08 Aligned_cols=88 Identities=16% Similarity=0.146 Sum_probs=65.6
Q ss_pred ccee-cCCeEEeecCccc--chhHHHHHHhcCCeecccccccceEEEEeccccchhhHHHHHHcCCceechhHHHHHHhc
Q 007803 119 YRFC-YAPLILFVDSFQV--NAPLQEKVSSIGAFITSKFCQECTHILVQHHMRVKGELLDAIVAKKPLVDVSWLEVVAEK 195 (589)
Q Consensus 119 frl~-~~PlVl~~Ssl~~--~~~L~~~l~~LGg~vv~~ws~~cTHLV~~~s~r~T~KlL~ALi~gkpIVtp~wl~aLa~~ 195 (589)
|++. +.-+++|++.+.. ...|+..+..+||.+.......|||||++ ...+.|+-+|.-.+.+||+++||.++.+.
T Consensus 8 ~~~~~F~g~~i~~sg~~~~~r~~l~~~i~~~GG~~~~~~~~~~THLV~~--~~~~~K~~~a~~~~i~IV~~~Wl~dsi~~ 85 (109)
T 2cou_A 8 FKVPPFQDCILSFLGFSDEEKHSMEEMTEMQGGSYLPVGDERCTHLIVE--ENTVKDLPFEPSKKLFVVKQEWFWGSIQM 85 (109)
T ss_dssp SCCCTTTTCBEEEESSCHHHHHHHHHHHHHHTCBCCCTTCTTCSEEEEC--TTTCSSCSSCCCTTSEEECHHHHHHHHHT
T ss_pred ccCCcCCCeEEEecCCCHHHHHHHHHHHHHcCCEEecccCCCccEEEEe--CCccHHHHHHHHCCCeEecHHHHHHHHHc
Confidence 4444 3555666655432 37788999999999999899999999994 34467777888889999999999999766
Q ss_pred cCCCCCCCCCCCCCCC
Q 007803 196 SIRTDFPGCNSHVTTL 211 (589)
Q Consensus 196 ~~~~elPd~~dflPpl 211 (589)
+. +-++..|.+..
T Consensus 86 g~---~ldE~~Y~~~~ 98 (109)
T 2cou_A 86 DA---RAGETMYLYEK 98 (109)
T ss_dssp TS---CCCGGGTBCCC
T ss_pred CC---cCChhccCCCC
Confidence 43 34566776554
No 54
>3l46_A Protein ECT2; alternative splicing, guanine-nucleotide releasing factor, phosphoprotein, polymorphism, proto-oncogene, structural genomics; 1.48A {Homo sapiens}
Probab=98.05 E-value=1.9e-06 Score=76.99 Aligned_cols=86 Identities=16% Similarity=0.124 Sum_probs=63.4
Q ss_pred cccee-cCCeEEeecCccc--chhHHHHHHhcCCeecccccccceEEEEeccccchhhHHHHHHcCCceechhHHHHHHh
Q 007803 118 TYRFC-YAPLILFVDSFQV--NAPLQEKVSSIGAFITSKFCQECTHILVQHHMRVKGELLDAIVAKKPLVDVSWLEVVAE 194 (589)
Q Consensus 118 ~frl~-~~PlVl~~Ssl~~--~~~L~~~l~~LGg~vv~~ws~~cTHLV~~~s~r~T~KlL~ALi~gkpIVtp~wl~aLa~ 194 (589)
.|++. +.-+++|++.+.. ...|++.+.++||.+.......|||||++ .....|+.+|...+.|||+++||.++.+
T Consensus 16 ~~~~p~F~g~~Ic~sGf~~~er~~l~~~i~~~GG~~~~~l~~~cTHLV~~--~~~~~K~~~A~~~~i~IVs~eWl~dsi~ 93 (112)
T 3l46_A 16 FQGVPPFQDCILSFLGFSDEEKTNMEEMTEMQGGKYLPLGDERCTHLVVE--ENIVKDLPFEPSKKLYVVKQEWFWGSIQ 93 (112)
T ss_dssp --CCCTTTTCEECEESCCHHHHHHHHHHHHHTTCEECCTTCTTCSEEEEC--TTTBSSCSSCCCSSCEEEEHHHHHHHHH
T ss_pred ccCCCccCCeEEEEeCCCHHHHHHHHHHHHHcCCEECcccCCCceEEEec--CCchhhHHHHHHCCeeEecHHHHHHHHH
Confidence 35554 4556777765443 38899999999999999888999999994 2334577788889999999999988876
Q ss_pred ccCCCCCCCCCCCC
Q 007803 195 KSIRTDFPGCNSHV 208 (589)
Q Consensus 195 ~~~~~elPd~~dfl 208 (589)
.+. +-++..|.
T Consensus 94 ~g~---~ldE~~Y~ 104 (112)
T 3l46_A 94 MDA---RAGETMYL 104 (112)
T ss_dssp HTS---CCCGGGSB
T ss_pred cCC---ccChhhce
Confidence 543 33555554
No 55
>1wv3_A Similar to DNA segregation ATPase and related proteins; structural genomics, unknown function; 1.75A {Staphylococcus aureus subsp} SCOP: b.26.1.4 b.26.1.4
Probab=97.97 E-value=1e-05 Score=80.77 Aligned_cols=81 Identities=16% Similarity=0.121 Sum_probs=57.6
Q ss_pred ecCCeEEEccCC-CCeeecCCCcccccceEEEEeecccCCcccCCCCCcccccEEEEEC-Cccce-EEeCcCCCceeeec
Q 007803 20 FSKGNYKVGRKG-CDIIINKDKGVSRVHAEILVDEMISLNPFQDKSSKVSTTRVRIKDC-SKYGT-FINKNLGSKEKVHE 96 (589)
Q Consensus 20 l~g~~YtIGRk~-cdIvI~~D~sISR~HA~I~v~~~~~~~~~~~~~~~~~~~~v~I~Dl-SknGT-fVNg~~~~~ekI~~ 96 (589)
+.+...+|||+. |||+| ++. + ||.|..... .....|+|+|+ |+||| |||| +++.
T Consensus 89 ~~~~~itIG~~~~~dI~l-~~~-~---~~~~~~~~~------------~~~~~~~l~~l~s~ngtvyvNg-----~~i~- 145 (238)
T 1wv3_A 89 SIQDTMTIGPNAYDDMVI-QSL-M---NAIIIKDFQ------------SIQESQYVRIVHDKNTDVYINY-----ELQE- 145 (238)
T ss_dssp SSCSEEEEESSTTSSEEC-TTC-S---SCEEEECGG------------GHHHHCEEEEECCTTCCEEETT-----EECC-
T ss_pred cCCceEEEeCCCCCeEEe-CCC-e---eEEEEeccc------------CcCCcEEEEEccCCCCCEEECC-----EEec-
Confidence 445699999987 99999 565 2 676666510 00015899999 99997 9999 8886
Q ss_pred cCCceEEcc-CCCeEEEccCCcccceecCCeEE
Q 007803 97 FPNKEATLK-DGDLVSFGTGNATYRFCYAPLIL 128 (589)
Q Consensus 97 ~~g~~~~L~-~GD~I~fG~~~~~frl~~~PlVl 128 (589)
....|+ .||.|.||. ..|++.-.-+.+
T Consensus 146 ---~~~~L~~~GD~I~ig~--~~~~~~~~~l~i 173 (238)
T 1wv3_A 146 ---QLTNKAYIGDHIYVEG--IWLEVQADGLNV 173 (238)
T ss_dssp ---SSEEEEETTCEEEETT--EEEEECSSEEEE
T ss_pred ---cceeccCCcCEEEECC--EEEEEECCEEEE
Confidence 567899 999999984 344444444433
No 56
>4id3_A DNA repair protein REV1; BRCT domain, protein binding; HET: DNA; 1.97A {Saccharomyces cerevisiae S288C}
Probab=97.84 E-value=3.7e-05 Score=64.34 Aligned_cols=65 Identities=14% Similarity=0.149 Sum_probs=49.3
Q ss_pred hhHHHHHHhcCCeeccccc--ccceEEEEeccccchhhHHHHHHcCCceechhHHHHHHhccCCCCCCCCCCCC
Q 007803 137 APLQEKVSSIGAFITSKFC--QECTHILVQHHMRVKGELLDAIVAKKPLVDVSWLEVVAEKSIRTDFPGCNSHV 208 (589)
Q Consensus 137 ~~L~~~l~~LGg~vv~~ws--~~cTHLV~~~s~r~T~KlL~ALi~gkpIVtp~wl~aLa~~~~~~elPd~~dfl 208 (589)
..|++.+..+||.++.++. ..|||+|+. .....|...+ .+.+||+++|+.++.+.+. +-+++.|+
T Consensus 24 ~~l~~~i~~~GG~~~~~~~~~~~~THlI~~--~~~~~K~~~~--~~~~iV~~~Wi~dci~~~~---~l~e~~Y~ 90 (92)
T 4id3_A 24 LQLHEMIVLHGGKFLHYLSSKKTVTHIVAS--NLPLKKRIEF--ANYKVVSPDWIVDSVKEAR---LLPWQNYS 90 (92)
T ss_dssp HHHHHHHHHTTCEEESSCCCTTTCCEEECS--CCCHHHHHHT--TTSCEECTHHHHHHHHHTS---CCCGGGGB
T ss_pred HHHHHHHHHCCCEEEEEecCCCceEEEEec--CCCHHHHHHc--CCCCEEcccHHHHHHHcCC---cCChhhcc
Confidence 7789999999999999998 799999993 3444564332 6889999999999876542 23455554
No 57
>1wf6_A Similar to S.pombe -RAD4+/CUT5+product (A40727); BRCT, topoisomerase II binding protein, checkpoint; NMR {Homo sapiens} SCOP: c.15.1.5
Probab=97.79 E-value=4.7e-05 Score=69.05 Aligned_cols=85 Identities=13% Similarity=0.175 Sum_probs=58.2
Q ss_pred cCCeEEeecCccc--chhHHHHHHhcCCeecccccccceEEEEeccccchhhHH-HHHHcCCceechhHHHHHHhccCCC
Q 007803 123 YAPLILFVDSFQV--NAPLQEKVSSIGAFITSKFCQECTHILVQHHMRVKGELL-DAIVAKKPLVDVSWLEVVAEKSIRT 199 (589)
Q Consensus 123 ~~PlVl~~Ssl~~--~~~L~~~l~~LGg~vv~~ws~~cTHLV~~~s~r~T~KlL-~ALi~gkpIVtp~wl~aLa~~~~~~ 199 (589)
+.-.+++++.... ...|+..+...||.++..+...|||+|+. ....+.+-+ .+...+.+||+++|+.++.+.+.
T Consensus 41 F~g~~i~i~G~~~~~~~~L~~~i~~~Gg~v~~~l~~~vTHvI~~-~~~~~~~~~~~~~~~~~~iV~~~Wv~dsi~~~~-- 117 (132)
T 1wf6_A 41 LDGCRIYLCGFSGRKLDKLRRLINSGGGVRFNQLNEDVTHVIVG-DYDDELKQFWNKSAHRPHVVGAKWLLECFSKGY-- 117 (132)
T ss_dssp TTTCEEEEESCCSHHHHHHHHHHHHTTCEEESSCCSSCCEEEES-SCCSHHHHHHHHSCCCCCEEEHHHHHHHHHHSS--
T ss_pred cCCEEEEEECCChHHHHHHHHHHHHCCCEEeCcCCCCCeEEEEC-CchHHHHHHHHhhCCCCeEechHHHHHHHHcCC--
Confidence 4455666653322 27788999999999999998999999994 322222222 22224679999999999876542
Q ss_pred CCCCCCCCCCCC
Q 007803 200 DFPGCNSHVTTL 211 (589)
Q Consensus 200 elPd~~dflPpl 211 (589)
+-+++.|.|+.
T Consensus 118 -ll~e~~Y~~~~ 128 (132)
T 1wf6_A 118 -MLSEEPYIHSG 128 (132)
T ss_dssp -CCCSGGGBCCC
T ss_pred -cCCHhhccCCC
Confidence 45677888775
No 58
>3pa6_A Microcephalin; BRCT domain, cell cycle; HET: MSE; 1.50A {Homo sapiens} PDB: 3ktf_A* 2wt8_A*
Probab=97.76 E-value=5.7e-05 Score=66.70 Aligned_cols=70 Identities=16% Similarity=0.231 Sum_probs=53.1
Q ss_pred hhHHHHHHhcCCeecccccccceEEEEeccccchhhHHHHHHcCCceechhHHHHHHhccCCCCCCCCCCCCCCC
Q 007803 137 APLQEKVSSIGAFITSKFCQECTHILVQHHMRVKGELLDAIVAKKPLVDVSWLEVVAEKSIRTDFPGCNSHVTTL 211 (589)
Q Consensus 137 ~~L~~~l~~LGg~vv~~ws~~cTHLV~~~s~r~T~KlL~ALi~gkpIVtp~wl~aLa~~~~~~elPd~~dflPpl 211 (589)
..|...+.++||.++..+...+||||..+.- ..+.-.|.-.+.+||+++|+.++...+. ..|++.|.++.
T Consensus 28 ~~l~~~l~~~GA~v~~~l~~~vTHvV~~~~~--~~~~~~A~~~~i~iV~~~Wv~~C~~~~~---~vdE~~Y~i~~ 97 (107)
T 3pa6_A 28 KTFTTQLVDMGAKVSKTFNKQVTHVIFKDGY--QSTWDKAQKRGVKLVSVLWVEKCRTAGA---HIDESLFPAAN 97 (107)
T ss_dssp HHHHHHHHHTTCEECSSCCTTCCEEEEESCC--HHHHHHHHHHTCEEECHHHHHHHHHHTS---CCCGGGSBCCC
T ss_pred HHHHHHHHHcCCEEecccCCCccEEEEeCCC--ChHHHHHhcCCCEEECHHHHHHHHHhCc---cCChhcccCCC
Confidence 6788999999999999999999999995322 3444557777899999999999975532 34555555443
No 59
>2ebw_A DNA repair protein REV1; A/B/A 3 layers, parallel beta-sheet, DNA replication, translession synthesis, TLS, DNA polymerase zeta, PCNA; HET: DNA; NMR {Homo sapiens}
Probab=97.62 E-value=0.0001 Score=62.62 Aligned_cols=69 Identities=10% Similarity=0.251 Sum_probs=49.6
Q ss_pred CCeEEeecCcc--cchhHHHHHHhcCCeeccccc-ccceEEEEeccccchhhHHHHHHcCCceechhHHHHHHhcc
Q 007803 124 APLILFVDSFQ--VNAPLQEKVSSIGAFITSKFC-QECTHILVQHHMRVKGELLDAIVAKKPLVDVSWLEVVAEKS 196 (589)
Q Consensus 124 ~PlVl~~Ssl~--~~~~L~~~l~~LGg~vv~~ws-~~cTHLV~~~s~r~T~KlL~ALi~gkpIVtp~wl~aLa~~~ 196 (589)
.-+++|.+... ....|+..+...||.+...+. ..|||+|++ ...+.|.-.+. +.+||+|+|+.++.+.+
T Consensus 14 ~g~~~~isg~~~~~~~~L~~~i~~~GG~~~~~~~~~~~THlI~~--~~~~~k~~~~~--~~~iV~p~Wl~dci~~~ 85 (97)
T 2ebw_A 14 SGVAIYVNGYTDPSAEELRKLMMLHGGQYHVYYSRSKTTHIIAT--NLPNAKIKELK--GEKVIRPEWIVESIKAG 85 (97)
T ss_dssp TTCEEEECSSCSSCHHHHHHHHHHTTCEECSSCCSSSCCEEECS--CCCTTHHHHTS--SSCCBCTHHHHHHHHHT
T ss_pred CCeEEEEeCCCcccHHHHHHHHHHcCCEEeeecCCCCCEEEEec--CCChHHHHHhc--CCCEeChHHHHHHHHcC
Confidence 34455554322 137899999999999887765 589999993 33456665443 88999999999886554
No 60
>3ef0_A RNA polymerase II subunit A C-terminal domain phosphatase; CTD, FCPH, BRCT, hydrolase, ALF4, transition state analog, cobalt, magnesium; 2.10A {Schizosaccharomyces pombe}
Probab=97.47 E-value=0.00019 Score=76.02 Aligned_cols=57 Identities=18% Similarity=0.268 Sum_probs=52.1
Q ss_pred hhHHHHHHhcCCeecccccccceEEEEeccccchhhHHHHHHc-CCceechhHHHHHHhc
Q 007803 137 APLQEKVSSIGAFITSKFCQECTHILVQHHMRVKGELLDAIVA-KKPLVDVSWLEVVAEK 195 (589)
Q Consensus 137 ~~L~~~l~~LGg~vv~~ws~~cTHLV~~~s~r~T~KlL~ALi~-gkpIVtp~wl~aLa~~ 195 (589)
..|...+.++||.++.+++..|||||+ ....|.|+..|... |.+||+++||.++...
T Consensus 303 ~~l~~l~~~lGa~v~~~vs~~vTHLVa--~~~~t~K~~~A~~~~~I~IV~~~Wl~~c~~~ 360 (372)
T 3ef0_A 303 SDIAKWAMSFGAEVVLDFSVPPTHLIA--AKIRTEKVKKAVSMGNIKVVKLNWLTESLSQ 360 (372)
T ss_dssp SHHHHHHHHTTCEEESSSSSCCSEEEE--CSCCCHHHHHHHHSSSCCEEEHHHHHHHHHT
T ss_pred HHHHHHHHHcCCEEeCcCCCCceEEEE--cCCCchHHHHHHhcCCCEEEcHHHHHHHHHh
Confidence 688999999999999999999999999 56789999999988 7899999999999754
No 61
>3ef1_A RNA polymerase II subunit A C-terminal domain phosphatase; CTD, FCPH, BRCT, hydrolase, BEF3, acylphosphate analog, cobalt, magnesium; HET: BFD; 2.15A {Schizosaccharomyces pombe}
Probab=97.46 E-value=0.00019 Score=77.76 Aligned_cols=58 Identities=17% Similarity=0.233 Sum_probs=52.5
Q ss_pred hhHHHHHHhcCCeecccccccceEEEEeccccchhhHHHHHHcC-CceechhHHHHHHhcc
Q 007803 137 APLQEKVSSIGAFITSKFCQECTHILVQHHMRVKGELLDAIVAK-KPLVDVSWLEVVAEKS 196 (589)
Q Consensus 137 ~~L~~~l~~LGg~vv~~ws~~cTHLV~~~s~r~T~KlL~ALi~g-kpIVtp~wl~aLa~~~ 196 (589)
..|...+.++||.++.+|+..|||||+ ....|.|+..|...| .+||+++||.++....
T Consensus 373 ~~l~~~~~~lGa~~~~~vs~~vTHLVa--~~~~t~K~~~A~~~g~IkIVs~~WL~dcl~~~ 431 (442)
T 3ef1_A 373 SDIAKWAMSFGAEVVLDFSVPPTHLIA--AKIRTEKVKKAVSMGNIKVVKLNWLTESLSQW 431 (442)
T ss_dssp SHHHHHHHTTTCEECSSSSSCCSEEEE--CSCCCHHHHHHHHHSSSEEEEHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCEEeCCCCCCceEEEe--CCCCCHHHHHHHhcCCCEEEeHHHHHHHHHcC
Confidence 688999999999999999999999999 567899999999985 7999999999997543
No 62
>3ii6_X DNA ligase 4; XRCC4, NHEJ, DNA repair, BRCT, alternative splicing, coiled coil, DNA damage, DNA recombination, isopeptide bond, nucleus; HET: DNA; 2.40A {Homo sapiens} PDB: 2e2w_A*
Probab=97.45 E-value=0.0012 Score=66.43 Aligned_cols=56 Identities=13% Similarity=0.301 Sum_probs=46.7
Q ss_pred hhHHHHHHhcCCeecccccccceEEEEeccccchhhHHHHHHcC-CceechhHHHHHHhc
Q 007803 137 APLQEKVSSIGAFITSKFCQECTHILVQHHMRVKGELLDAIVAK-KPLVDVSWLEVVAEK 195 (589)
Q Consensus 137 ~~L~~~l~~LGg~vv~~ws~~cTHLV~~~s~r~T~KlL~ALi~g-kpIVtp~wl~aLa~~ 195 (589)
..|...+.+.||.++.++...+||+|++ +.|.|.-.++..| .+||+|+|+.++.+.
T Consensus 28 ~~L~~lI~~~GG~v~~n~~~~t~~iIa~---~~~~k~~~~~~~g~~~IV~p~Wv~Dci~~ 84 (263)
T 3ii6_X 28 PDLENRIAEFGGYIVQNPGPDTYCVIAG---SENIRVKNIILSNKHDVVKPAWLLECFKT 84 (263)
T ss_dssp HHHHHHHHHTTCEECSSCCTTEEEEECS---SCCHHHHHHHHSCSCCEECHHHHHHHHHH
T ss_pred HHHHHHHHHcCCEEEecCCCCEEEEEeC---CCCHHHHHHHhcCCCCEeehHHHHHHHhc
Confidence 7899999999999999888777777772 4568888888777 899999999888654
No 63
>3olc_X DNA topoisomerase 2-binding protein 1; BRCT domain, DNA repair, RAD9, DNA binding protein; HET: DNA; 2.40A {Homo sapiens} PDB: 2xnk_A* 2xnh_A*
Probab=97.29 E-value=0.0004 Score=71.28 Aligned_cols=83 Identities=18% Similarity=0.129 Sum_probs=64.0
Q ss_pred CCeEEeecCccc--chhHHHHHHhcCCeeccccc-ccceEEEEeccccchhhHHHHHHcCCceechhHHHHHHhccCCCC
Q 007803 124 APLILFVDSFQV--NAPLQEKVSSIGAFITSKFC-QECTHILVQHHMRVKGELLDAIVAKKPLVDVSWLEVVAEKSIRTD 200 (589)
Q Consensus 124 ~PlVl~~Ssl~~--~~~L~~~l~~LGg~vv~~ws-~~cTHLV~~~s~r~T~KlL~ALi~gkpIVtp~wl~aLa~~~~~~e 200 (589)
.-.++|+++... ...|++.+..+||.++.+++ ..|||||+ ....+.|...|.-.|.|||+++||.++...+.
T Consensus 201 ~g~~i~~tG~~~~~r~~l~~li~~~GG~~~~~ls~~~~THLI~--~~~~g~K~~~A~~~gi~IV~~~Wl~dsi~~g~--- 275 (298)
T 3olc_X 201 LGCIICVTGLCGLDRKEVQQLTVKHGGQYMGQLKMNECTHLIV--QEPKGQKYECAKRWNVHCVTTQWFFDSIEKGF--- 275 (298)
T ss_dssp TTCEEEECSCCHHHHHHHHHHHHHTTCEECSSCCTTTCCEEEC--SSSCSHHHHHHHHTTCEEECHHHHHHHHHHTS---
T ss_pred CCeEEEEeCCCCccHHHHHHHHHHcCCEEeceecCCCceEEEE--eCCCchHHHHHHHCCCeEEeHHHHHHHHHCCC---
Confidence 334555554322 37889999999999999998 79999999 44568899999999999999999998876542
Q ss_pred CCCCCCCCCCC
Q 007803 201 FPGCNSHVTTL 211 (589)
Q Consensus 201 lPd~~dflPpl 211 (589)
+-++..|.+..
T Consensus 276 ~lde~~Y~l~~ 286 (298)
T 3olc_X 276 CQDESIYKTEP 286 (298)
T ss_dssp CCCGGGSBSCC
T ss_pred CCCchhcCCCC
Confidence 34567777654
No 64
>1z56_C DNA ligase IV; DNA repair, BRCT, NHEJ, XRCC4, DNA ligase, coiled-coil; HET: DNA; 3.92A {Saccharomyces cerevisiae}
Probab=97.18 E-value=0.00015 Score=72.26 Aligned_cols=117 Identities=8% Similarity=0.028 Sum_probs=61.0
Q ss_pred chhHHHHHHhcCCeeccccccc-----ceEEEEeccccchhhHHHHHHcCCceechhHHHHHHhccCCCCCCCCCCC---
Q 007803 136 NAPLQEKVSSIGAFITSKFCQE-----CTHILVQHHMRVKGELLDAIVAKKPLVDVSWLEVVAEKSIRTDFPGCNSH--- 207 (589)
Q Consensus 136 ~~~L~~~l~~LGg~vv~~ws~~-----cTHLV~~~s~r~T~KlL~ALi~gkpIVtp~wl~aLa~~~~~~elPd~~df--- 207 (589)
...|...+.+.||.++.+.... .||++++ +.|.|.-.+...|.+||+|+|+.++.+.+.. +| ++.|
T Consensus 28 ~~~L~~li~~~GG~~~~~~~~~t~~~~~~~iI~~---~~t~k~~~~~~~~~~vV~p~Wv~dci~~~~l--lp-~~~y~~~ 101 (264)
T 1z56_C 28 RAELEKTIVEHGGKLIYNVILKRHSIGDVRLISC---KTTTECKALIDRGYDILHPNWVLDCIAYKRL--IL-IEPNYCF 101 (264)
T ss_dssp CCCTHHHHHHHHTTSCCCSSCCCCCSSCCEEEEC---SCCGGGGGGTTTTCCCBCSSTTHHHHSSCSC--CC-CCSCBSC
T ss_pred HHHHHHHHHHcCCEEeecCCCCccCccceEEEec---CCcHHHHHHHhCCCCEEechHHHHHhhcCCC--CC-CChHHhh
Confidence 3789999999999887533222 3577772 4677776666678999999999888755421 22 2222
Q ss_pred ---------------------CCCCcc-------CC---------CCccccCCcCcccCcCCcEEEEcCC---Ccccchh
Q 007803 208 ---------------------VTTLIM-------EG---------DPVELANVDTLENCMRGYTFLLDSS---MKYKYGD 247 (589)
Q Consensus 208 ---------------------lPpl~i-------e~---------~~~~l~p~~~R~~LF~G~TFIf~~~---~qy~~~~ 247 (589)
.++++. +. .+...........||+|++|+|... ... +
T Consensus 102 ~~~~~~~~~~~~~~d~~gdsy~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~lF~g~~~yl~~~~~~~~~---~ 178 (264)
T 1z56_C 102 NVSQKMRAVAEKRVDCLGDSFENDISETKLSSLYKSQLSLPPMGELEIDSEVRRFPLFLFSNRIAYVPRRKISTED---D 178 (264)
T ss_dssp CCGGGTHHHHGGGBCSSSCBSSSCCCHHHHHHTTSCCSCCCCCCCCSSCCSCCCCCCC----------------------
T ss_pred cCCHHHHHHHHHhccccCCccccCCCHHHHHHHHHhcccccchhhhhhhcccccCchhhhCCeEEEEecCCCchhH---H
Confidence 122110 00 0001112234578999999999652 222 3
Q ss_pred hHHHHHHHcCceEE
Q 007803 248 QLQSLLEVSGAKTL 261 (589)
Q Consensus 248 ~L~~lIe~aGGkvl 261 (589)
.+..+|+.+||++.
T Consensus 179 ~l~~~i~~~GG~v~ 192 (264)
T 1z56_C 179 IIEMKIKLFGGKIT 192 (264)
T ss_dssp -CHHHHHHHTTSCC
T ss_pred HHHHHHHHcCCEEe
Confidence 57888999999874
No 65
>3pc6_A DNA repair protein XRCC1; BRCT domain, protein:protein interactions, DNA L III-alpha BRCT2 domain, DNA binding protein; HET: DNA; 1.90A {Mus musculus} SCOP: c.15.1.1 PDB: 3pc8_A* 3qvg_B* 1cdz_A
Probab=95.72 E-value=0.028 Score=49.30 Aligned_cols=70 Identities=11% Similarity=0.154 Sum_probs=51.0
Q ss_pred CeEEeecCcc--c-chhHHHHHHhcCCeecccccccceEEEEeccccchhhHHHHHH--cCCceechhHHHHHHhcc
Q 007803 125 PLILFVDSFQ--V-NAPLQEKVSSIGAFITSKFCQECTHILVQHHMRVKGELLDAIV--AKKPLVDVSWLEVVAEKS 196 (589)
Q Consensus 125 PlVl~~Ssl~--~-~~~L~~~l~~LGg~vv~~ws~~cTHLV~~~s~r~T~KlL~ALi--~gkpIVtp~wl~aLa~~~ 196 (589)
-..++.+..- . ...|++.+...||.+....+..|||+|++ ..-+.++-.|+. .+..+|+|+|+-++.+++
T Consensus 10 g~~f~l~~~~p~~~r~~l~ryiia~GG~v~~~~~~~vTHvIt~--~~~d~~~~~a~~~~p~~~~V~P~WI~~Ci~~~ 84 (104)
T 3pc6_A 10 GKHFFLYGEFPGDERRRLIRYVTAFNGELEDYMNERVQFVITA--QEWDPNFEEALMENPSLAFVRPRWIYSCNEKQ 84 (104)
T ss_dssp TCEEEEESCCSTTHHHHHHHHHHHTTCEECSSCCTTCCEEEES--SCCCHHHHHHHTTCTTCEEECHHHHHHHHHHT
T ss_pred CeEEEEcCCCcHHHHHHHHHHHHHcCCEEEcccCCCceEEEeC--CCCChhHHHHhhhCCCCeEEccHHHHHHHhcC
Confidence 4455554322 1 26788889999999888778899999993 446777766663 357899999999986553
No 66
>1l7b_A DNA ligase; BRCT, autostructure, structural genomics, NESG, PSI, protein structure initiative, northeast structural genomics consortium; HET: DNA; NMR {Thermus thermophilus} SCOP: c.15.1.2
Probab=95.70 E-value=0.014 Score=50.12 Aligned_cols=56 Identities=14% Similarity=0.134 Sum_probs=49.2
Q ss_pred chhHHHHHHhcCCeecccccccceEEEEeccccchhhHHHHHHcCCceechhHHHHHH
Q 007803 136 NAPLQEKVSSIGAFITSKFCQECTHILVQHHMRVKGELLDAIVAKKPLVDVSWLEVVA 193 (589)
Q Consensus 136 ~~~L~~~l~~LGg~vv~~ws~~cTHLV~~~s~r~T~KlL~ALi~gkpIVtp~wl~aLa 193 (589)
...+++.+..+||.+..+.+..++|||+ .-....|+-.|.-.|.|||+.+||.++.
T Consensus 23 R~e~~~~i~~~Gg~v~~sVskkt~~LV~--g~~~gsK~~kA~~lgI~Ii~E~~f~~~l 78 (92)
T 1l7b_A 23 REEVKALLRRLGAKVTDSVSRKTSYLVV--GENPGSKLEKARALGVPTLTEEELYRLL 78 (92)
T ss_dssp HHHHHHHHHHTTCEEESCCSSSCCCBEE--CSSSSTTHHHHHCSSSCCEEHHHHHHHH
T ss_pred HHHHHHHHHHcCCEEeCcccCCeeEEEe--CCCCChHHHHHHHcCCcEEeHHHHHHHH
Confidence 3788899999999999999999999999 4556799999999999999999776654
No 67
>2cok_A Poly [ADP-ribose] polymerase-1; BRCT domain, DNA repair, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2le0_A
Probab=95.28 E-value=0.025 Score=50.39 Aligned_cols=59 Identities=12% Similarity=0.196 Sum_probs=49.6
Q ss_pred chhHHHHHHhcCCeecccccccceEEEEecc-ccchhhHHHHHHcCCceechhHHHHHHh
Q 007803 136 NAPLQEKVSSIGAFITSKFCQECTHILVQHH-MRVKGELLDAIVAKKPLVDVSWLEVVAE 194 (589)
Q Consensus 136 ~~~L~~~l~~LGg~vv~~ws~~cTHLV~~~s-~r~T~KlL~ALi~gkpIVtp~wl~aLa~ 194 (589)
...+++.+..+||++..+.+..++|||+... -....|+-.|...|.|||+.+||..+..
T Consensus 26 R~e~k~~ie~~Ggkv~~sVskkT~~lV~g~~~e~~gsKl~kA~~lgI~IvsE~~l~~~~~ 85 (113)
T 2cok_A 26 KDEVKAMIEKLGGKLTGTANKASLCISTKKEVEKMNKKMEEVKEANIRVVSEDFLQDVSA 85 (113)
T ss_dssp HHHHHHHHHHTTCEEESCSTTCSEEECCHHHHHHCCHHHHHHHHTTCCEECTHHHHHHHS
T ss_pred HHHHHHHHHHCCCEEcCccccCccEEEECCCCCCCChHHHHHHHCCCcEEeHHHHHHHHh
Confidence 3788999999999999999999999999211 2356799999999999999999988753
No 68
>2jw5_A DNA polymerase lambda; BRCT domain, family X polymerase, nonhomologous END joining (NHEJ), DNA damage, DNA repair, DNA replication, DNA synthesis; HET: DNA; NMR {Homo sapiens}
Probab=95.10 E-value=0.036 Score=48.47 Aligned_cols=59 Identities=20% Similarity=0.325 Sum_probs=39.9
Q ss_pred hhHHHHHHhcCCeecccccccceEEEEeccc--cchhhHHHH--HHcCCceechhHHHHHHhc
Q 007803 137 APLQEKVSSIGAFITSKFCQECTHILVQHHM--RVKGELLDA--IVAKKPLVDVSWLEVVAEK 195 (589)
Q Consensus 137 ~~L~~~l~~LGg~vv~~ws~~cTHLV~~~s~--r~T~KlL~A--Li~gkpIVtp~wl~aLa~~ 195 (589)
+.+...+.+.||.++.+|.+.+||+|+++.. ....+.|.+ +-....||.++|+.++...
T Consensus 30 ~i~~~~a~~~Ga~v~~~~~~~vTHVVvd~~~s~~~~l~~l~~~~l~~~~~iV~~~Wv~dci~~ 92 (106)
T 2jw5_A 30 ELFEKQIVQHGGQLCPAQGPGVTHIVVDEGMDYERALRLLRLPQLPPGAQLVKSAWLSLCLQE 92 (106)
T ss_dssp THHHHHHHHTTCCCCSTTCTTCCEEEECSSSCHHHHHHHTTCSSCCSSCEEEEHHHHHHHHHT
T ss_pred HHHHHHHHHcCCEEeeccCCCccEEEEcCCCCHHHHHHHHhhcccCCCcEEecCchHHHHHhc
Confidence 4445578889999999999999999995222 222222221 1123479999999998654
No 69
>2k6g_A Replication factor C subunit 1; protein, BRCT, DNA binding, activator, alternative splicing, ATP-binding, DNA replication, DNA- binding; NMR {Homo sapiens} PDB: 2k7f_A
Probab=95.01 E-value=0.067 Score=47.22 Aligned_cols=67 Identities=7% Similarity=0.094 Sum_probs=52.4
Q ss_pred EEeecCccc--chhHHHHHHhcCCeecccccccceEEEEeccccchhhHHHHHHcCCceechhHHHHHHh
Q 007803 127 ILFVDSFQV--NAPLQEKVSSIGAFITSKFCQECTHILVQHHMRVKGELLDAIVAKKPLVDVSWLEVVAE 194 (589)
Q Consensus 127 Vl~~Ssl~~--~~~L~~~l~~LGg~vv~~ws~~cTHLV~~~s~r~T~KlL~ALi~gkpIVtp~wl~aLa~ 194 (589)
++++..+.. ...+.+.+..+||.+..+.+..++|||+- .-.-+.|+-.|.-.|.|||+.+||.++..
T Consensus 38 ~v~TG~l~~~~R~e~~~~i~~~Gg~v~~sVSkkTd~LV~G-~~~g~sK~~kA~~lgI~Ii~E~~f~~ll~ 106 (109)
T 2k6g_A 38 FVITGVLESIERDEAKSLIERYGGKVTGNVSKKTNYLVMG-RDSGQSKSDKAAALGTKIIDEDGLLNLIR 106 (109)
T ss_dssp EEEESBCSSCCHHHHHHHHHHTTCEEESSCCTTCCEEEEC-BCCCHHHHHHHHHHTCEEECHHHHHHHHH
T ss_pred EEEeeeCCCCCHHHHHHHHHHcCCEeeCcccCCceEEEEC-CCCChHHHHHHHHcCCeEEeHHHHHHHHH
Confidence 344444432 37889999999999999999999999993 22234789899999999999999877653
No 70
>2ebu_A Replication factor C subunit 1; A/B/A 3 layers, parallel beta-sheet, DNA replication, clamp loader, RFC1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=94.74 E-value=0.1 Score=46.38 Aligned_cols=59 Identities=8% Similarity=0.076 Sum_probs=49.9
Q ss_pred chhHHHHHHhcCCeecccccccceEEEEeccccchhhHHHHHHcCCceechhHHHHHHhc
Q 007803 136 NAPLQEKVSSIGAFITSKFCQECTHILVQHHMRVKGELLDAIVAKKPLVDVSWLEVVAEK 195 (589)
Q Consensus 136 ~~~L~~~l~~LGg~vv~~ws~~cTHLV~~~s~r~T~KlL~ALi~gkpIVtp~wl~aLa~~ 195 (589)
...+++.+..+||++..+.+..++|||+- ...-+.|+-.|.-.|.+||+.+||.++...
T Consensus 39 R~e~~~~i~~~Ggkv~~sVSkkTd~LV~G-~~~g~sKl~KA~~lgI~IisE~~f~~ll~~ 97 (112)
T 2ebu_A 39 RDEAKSLIERYGGKVTGNVSKKTNYLVMG-RDSGQSKSDKAAALGTKIIDEDGLLNLIRT 97 (112)
T ss_dssp HHHHHHHHHHTTCEECSSCCSSCCEEEEC-SSCCSHHHHHHHHHTCEEEEHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCEEeccccCCeeEEEec-CCCChHHHHHHHHcCCeEEeHHHHHHHHhh
Confidence 37889999999999999999999999993 223347888999999999999998887654
No 71
>2coe_A Deoxynucleotidyltransferase, terminal variant; BRCT domain, DNA polymerase, teminal deoxynucleotidyltransferase, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=94.05 E-value=0.26 Score=44.27 Aligned_cols=57 Identities=25% Similarity=0.363 Sum_probs=42.6
Q ss_pred hhHHHHHHhcCCeecccccccceEEEEeccccchhhHHHHHHc--------CCceechhHHHHHHhcc
Q 007803 137 APLQEKVSSIGAFITSKFCQECTHILVQHHMRVKGELLDAIVA--------KKPLVDVSWLEVVAEKS 196 (589)
Q Consensus 137 ~~L~~~l~~LGg~vv~~ws~~cTHLV~~~s~r~T~KlL~ALi~--------gkpIVtp~wl~aLa~~~ 196 (589)
+-|...+.+-|+.|+..+++.+||+|+. .. ....++ ++.. +.+||+.+|++++.+.+
T Consensus 39 ~~l~~l~r~~G~~V~~~ls~~VTHVVve-~~-~~~e~~-~~l~~~~l~~~~~~~lv~i~Wl~esmk~g 103 (120)
T 2coe_A 39 ALLMELARRKGFRVENELSDSVTHIVAE-NN-SGSDVL-EWLQAQKVQVSSQPELLDVSWLIECIGAG 103 (120)
T ss_dssp HHHHHHHHHHTCEECSSCCTTCCEEEES-SC-CHHHHH-HHHHHCCCCCSSCCEEEEHHHHHHHHHTT
T ss_pred HHHHHHHHHcCCEEeeccCCCcCEEEec-CC-CHHHHH-HHHhccccccccccEEeecHHHHHHHHcC
Confidence 6677888899999999999999999993 33 233333 2222 45899999999996543
No 72
>3ii6_X DNA ligase 4; XRCC4, NHEJ, DNA repair, BRCT, alternative splicing, coiled coil, DNA damage, DNA recombination, isopeptide bond, nucleus; HET: DNA; 2.40A {Homo sapiens} PDB: 2e2w_A*
Probab=93.37 E-value=0.13 Score=51.57 Aligned_cols=67 Identities=15% Similarity=0.158 Sum_probs=44.3
Q ss_pred hHHHHHHhcCCeecccccccceEEEEeccccchhhHHHHHH----cCCceechhHHHHHHhccCCCCCCCCCCCC
Q 007803 138 PLQEKVSSIGAFITSKFCQECTHILVQHHMRVKGELLDAIV----AKKPLVDVSWLEVVAEKSIRTDFPGCNSHV 208 (589)
Q Consensus 138 ~L~~~l~~LGg~vv~~ws~~cTHLV~~~s~r~T~KlL~ALi----~gkpIVtp~wl~aLa~~~~~~elPd~~dfl 208 (589)
.++..+...||.++......|||+|+...... ...+.++- ....||+++|+.++...+. +.++++|.
T Consensus 192 ~~~~~i~~~GG~v~~~l~~~vTHVVv~~~~~r-~~~~~~~~~~~~~~~~iV~~~Wv~dci~~~~---~l~E~~Y~ 262 (263)
T 3ii6_X 192 IKALELRFHGAKVVSCLAEGVSHVIIGEDHSR-VADFKAFRRTFKRKFKILKESWVTDSIDKCE---LQEENQYL 262 (263)
T ss_dssp HHHHHHHHTTCEEESSCCTTCCEEEECSCCTT-HHHHHHHHHTCSSCCEEEETHHHHHHHHTTS---CCCGGGTB
T ss_pred HHHHHHHccCCEEecCCCCCceEEEECCCCcc-HHHHHHHHhhcCCCCEEeChHHHHHHHHcCC---cCCHhhCC
Confidence 44677889999999999888999999421111 11122332 2447999999999875432 34555553
No 73
>1z56_C DNA ligase IV; DNA repair, BRCT, NHEJ, XRCC4, DNA ligase, coiled-coil; HET: DNA; 3.92A {Saccharomyces cerevisiae}
Probab=93.17 E-value=0.046 Score=54.25 Aligned_cols=70 Identities=13% Similarity=0.210 Sum_probs=40.3
Q ss_pred hhHHHHHHhcCCeecccccccceEEEEecc-ccchhh----HHHHHHcC----------CceechhHHHHHHhccCCCCC
Q 007803 137 APLQEKVSSIGAFITSKFCQECTHILVQHH-MRVKGE----LLDAIVAK----------KPLVDVSWLEVVAEKSIRTDF 201 (589)
Q Consensus 137 ~~L~~~l~~LGg~vv~~ws~~cTHLV~~~s-~r~T~K----lL~ALi~g----------kpIVtp~wl~aLa~~~~~~el 201 (589)
..|+..+...||.++.+.. .+||+|+... -..... +-..+... ..||++.|+.++...+ .+
T Consensus 178 ~~l~~~i~~~GG~v~~~l~-~~t~hVV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iV~~~Wv~dci~~~---~l 253 (264)
T 1z56_C 178 DIIEMKIKLFGGKITDQQS-LCNLIIIPYTDPILRKDCMNEVHEKIKEQIKASDTIPKIARVVAPEWVDHSINEN---CQ 253 (264)
T ss_dssp --CHHHHHHHTTSCCCCSS-SCSEEECCCSSTTTHHHHSSHHHHTTTTTTTSSSSCCCCCEEECTHHHHHHHTTS---CC
T ss_pred HHHHHHHHHcCCEEecccC-CCEEEEEeCCCccchHHHHHHHHHHHHhhcccccccCCCCEEecHHHHHHHHHcC---Cc
Confidence 5677889999999998876 5555544211 000111 11222222 3899999999997654 35
Q ss_pred CCCCCCCCC
Q 007803 202 PGCNSHVTT 210 (589)
Q Consensus 202 Pd~~dflPp 210 (589)
-+++.|.|+
T Consensus 254 l~e~~Y~~~ 262 (264)
T 1z56_C 254 VPEEDFPVV 262 (264)
T ss_dssp CSSCCC---
T ss_pred CCHHHcCCC
Confidence 677888775
No 74
>2dun_A POL MU, DNA polymerase MU; layers A/B/A, parallel beta-sheet of 4 strands, non- homologous END jonting, somatic hypermutation, V(D)J recombination; HET: DNA; NMR {Homo sapiens} PDB: 2htf_A*
Probab=92.93 E-value=0.3 Score=44.69 Aligned_cols=77 Identities=18% Similarity=0.253 Sum_probs=51.2
Q ss_pred ccceecCCeEEeecCccc----chhHHHHHHhcCCeecccccccceEEEEeccccchhhHHH-------HHH---cCCce
Q 007803 118 TYRFCYAPLILFVDSFQV----NAPLQEKVSSIGAFITSKFCQECTHILVQHHMRVKGELLD-------AIV---AKKPL 183 (589)
Q Consensus 118 ~frl~~~PlVl~~Ssl~~----~~~L~~~l~~LGg~vv~~ws~~cTHLV~~~s~r~T~KlL~-------ALi---~gkpI 183 (589)
.....|..++++.-.... .+-|.+.+.+-|+.+...+++.+||+|+ +.... ..++. .|. .+.++
T Consensus 6 ~~~~~F~~v~iyive~kmG~sRr~fL~~la~~kGf~v~~~~S~~VTHVV~-E~~s~-~~~~~~L~~~~~~l~~~~~~~~l 83 (133)
T 2dun_A 6 SGSTRFPGVAIYLVEPRMGRSRRAFLTGLARSKGFRVLDACSSEATHVVM-EETSA-EEAVSWQERRMAAAPPGCTPPAL 83 (133)
T ss_dssp CSSCSEEEEEEEECHHHHCSHHHHHHHHHHHHHTEEECSSCCTTCCEEEE-SSCCH-HHHHHHHHHHHHHSCTTCCCCEE
T ss_pred CCccccCccEEEEecCCcCHHHHHHHHHHHHhcCCEeccccCCCceEEEe-cCCCH-HHHHHHHHHhhcccCcCCCCcEE
Confidence 334455566666522111 2778888899999999999999999999 43222 22221 121 56689
Q ss_pred echhHHHHHHhcc
Q 007803 184 VDVSWLEVVAEKS 196 (589)
Q Consensus 184 Vtp~wl~aLa~~~ 196 (589)
|..+||.++.+.+
T Consensus 84 LdisWltecm~~g 96 (133)
T 2dun_A 84 LDISWLTESLGAG 96 (133)
T ss_dssp EEHHHHHHHHHHT
T ss_pred eccHHHHHHHhcC
Confidence 9999999886543
No 75
>2ep8_A Pescadillo homolog 1; A/B/A 3 layers, nucleolus, ribosome biogenesis, DNA damage, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=92.71 E-value=0.22 Score=43.21 Aligned_cols=68 Identities=16% Similarity=0.173 Sum_probs=46.1
Q ss_pred cCCeEEeecCcccchhHHHHHHhcCCeecccc-----------cccceEEEEeccccchhhHHHHHHcCCceechhHHHH
Q 007803 123 YAPLILFVDSFQVNAPLQEKVSSIGAFITSKF-----------CQECTHILVQHHMRVKGELLDAIVAKKPLVDVSWLEV 191 (589)
Q Consensus 123 ~~PlVl~~Ssl~~~~~L~~~l~~LGg~vv~~w-----------s~~cTHLV~~~s~r~T~KlL~ALi~gkpIVtp~wl~a 191 (589)
|..+.++.++-.....|+..+...||.++.+- ....||+|++ . .+.+- ...++.+|.|.|+-+
T Consensus 13 F~g~~F~i~~e~p~~~le~~I~~~GG~v~~~~~~~~g~~~~~~~~~iTh~I~d-r--p~~~~---~~~~r~~VqPqWV~D 86 (100)
T 2ep8_A 13 FEGLKFFLNREVPREALAFIIRSFGGEVSWDKSLCIGATYDVTDSRITHQIVD-R--PGQQT---SVIGRCYVQPQWVFD 86 (100)
T ss_dssp TSSCEEECCSSSCHHHHHHHHHHTTCEEECCTTTSSCCCSCTTCTTCCEEECS-C--TTTSC---CBTTBEEECTHHHHH
T ss_pred cCCcEEEEecCCCHHHHHHHHHHcCCEEEeccccccCcccccCCCceEEEEec-c--cchhh---hcCCCeEEcchHHHH
Confidence 45667776542223788888999999986531 2467999994 3 22211 235779999999988
Q ss_pred HHhcc
Q 007803 192 VAEKS 196 (589)
Q Consensus 192 La~~~ 196 (589)
+...+
T Consensus 87 cin~~ 91 (100)
T 2ep8_A 87 SVNAR 91 (100)
T ss_dssp HHHHT
T ss_pred HHhcC
Confidence 86554
No 76
>2ebu_A Replication factor C subunit 1; A/B/A 3 layers, parallel beta-sheet, DNA replication, clamp loader, RFC1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=91.23 E-value=0.7 Score=40.93 Aligned_cols=77 Identities=22% Similarity=0.331 Sum_probs=51.6
Q ss_pred ccCcCCcEEEEcCCCcccchhhHHHHHHHcCceEEEeeecCCCCCCccccccCeEEEEeCCCCh-hhHHHHHhhCCCCcc
Q 007803 227 ENCMRGYTFLLDSSMKYKYGDQLQSLLEVSGAKTLSIESFCPSSQDSECVEHNSVVYVLPRKSE-DCSKSILKLSSLSRV 305 (589)
Q Consensus 227 ~~LF~G~TFIf~~~~qy~~~~~L~~lIe~aGGkvll~e~~~~~~~~~~~g~~~~vVlV~p~~w~-~~~~~~~~l~glR~I 305 (589)
.+.|.|++|+|+..-..--.+.++.+|+..||++.. .++..+ -.||....+. -.+ .-++..|.+.|
T Consensus 20 ~~~l~G~~~v~TG~l~~~~R~e~~~~i~~~Ggkv~~--sVSkkT----------d~LV~G~~~g~sKl-~KA~~lgI~Ii 86 (112)
T 2ebu_A 20 ENCLEGLIFVITGVLESIERDEAKSLIERYGGKVTG--NVSKKT----------NYLVMGRDSGQSKS-DKAAALGTKII 86 (112)
T ss_dssp SSSSTTCEEEECSCCSSSCHHHHHHHHHHTTCEECS--SCCSSC----------CEEEECSSCCSHHH-HHHHHHTCEEE
T ss_pred CCCcCCCEEEEeeeCCCCCHHHHHHHHHHcCCEEec--cccCCe----------eEEEecCCCChHHH-HHHHHcCCeEE
Confidence 457999999999887432357899999999999741 111221 2344443333 334 33455699999
Q ss_pred chhHHHHHHHh
Q 007803 306 NEKDLICAVLS 316 (589)
Q Consensus 306 ~e~E~l~AIL~ 316 (589)
+|.+|+..|-.
T Consensus 87 sE~~f~~ll~~ 97 (112)
T 2ebu_A 87 DEDGLLNLIRT 97 (112)
T ss_dssp EHHHHHHHHHH
T ss_pred eHHHHHHHHhh
Confidence 99999988754
No 77
>2k6g_A Replication factor C subunit 1; protein, BRCT, DNA binding, activator, alternative splicing, ATP-binding, DNA replication, DNA- binding; NMR {Homo sapiens} PDB: 2k7f_A
Probab=90.91 E-value=0.59 Score=41.12 Aligned_cols=77 Identities=22% Similarity=0.312 Sum_probs=51.0
Q ss_pred ccCcCCcEEEEcCCCcccchhhHHHHHHHcCceEEEeeecCCCCCCccccccCeEEEEeCCCCh-hhHHHHHhhCCCCcc
Q 007803 227 ENCMRGYTFLLDSSMKYKYGDQLQSLLEVSGAKTLSIESFCPSSQDSECVEHNSVVYVLPRKSE-DCSKSILKLSSLSRV 305 (589)
Q Consensus 227 ~~LF~G~TFIf~~~~qy~~~~~L~~lIe~aGGkvll~e~~~~~~~~~~~g~~~~vVlV~p~~w~-~~~~~~~~l~glR~I 305 (589)
...|.|++|+|+..-..--.+.+..+|+..||++..- ++..+ -.||....+. -.+ .-++..|.+.|
T Consensus 30 ~~~l~G~~~v~TG~l~~~~R~e~~~~i~~~Gg~v~~s--VSkkT----------d~LV~G~~~g~sK~-~kA~~lgI~Ii 96 (109)
T 2k6g_A 30 ENCLEGLIFVITGVLESIERDEAKSLIERYGGKVTGN--VSKKT----------NYLVMGRDSGQSKS-DKAAALGTKII 96 (109)
T ss_dssp TTTTTTCEEEEESBCSSCCHHHHHHHHHHTTCEEESS--CCTTC----------CEEEECBCCCHHHH-HHHHHHTCEEE
T ss_pred CCCCCCCEEEEeeeCCCCCHHHHHHHHHHcCCEeeCc--ccCCc----------eEEEECCCCChHHH-HHHHHcCCeEE
Confidence 3579999999988764223478999999999998521 12222 1333333333 333 33455699999
Q ss_pred chhHHHHHHHh
Q 007803 306 NEKDLICAVLS 316 (589)
Q Consensus 306 ~e~E~l~AIL~ 316 (589)
+|.+|+..|-.
T Consensus 97 ~E~~f~~ll~~ 107 (109)
T 2k6g_A 97 DEDGLLNLIRN 107 (109)
T ss_dssp CHHHHHHHHHH
T ss_pred eHHHHHHHHHh
Confidence 99999987744
No 78
>2d8m_A DNA-repair protein XRCC1; parallel beta-sheet, DNA ligase III, poly(ADP-ribose) polymerase-1, DNA polymerase beta, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=90.51 E-value=0.97 Score=40.29 Aligned_cols=107 Identities=12% Similarity=0.054 Sum_probs=66.4
Q ss_pred ccCcCCcEEEEcCCCcccchhhHHHHHHHcCceEEEeeecCCCCCCccccccCeEEEEeCCCChhhHHHHHhhCCCCccc
Q 007803 227 ENCMRGYTFLLDSSMKYKYGDQLQSLLEVSGAKTLSIESFCPSSQDSECVEHNSVVYVLPRKSEDCSKSILKLSSLSRVN 306 (589)
Q Consensus 227 ~~LF~G~TFIf~~~~qy~~~~~L~~lIe~aGGkvll~e~~~~~~~~~~~g~~~~vVlV~p~~w~~~~~~~~~l~glR~I~ 306 (589)
..+|+|++|+|....... ...|..+|+..||++... ++.. ..+ ||........+.. +...|...|+
T Consensus 20 ~~~f~g~~i~itG~~~~~-r~~l~~~i~~~Gg~v~~~--~s~~--------~Th--LI~~~~~~~K~~~-A~~~gi~IV~ 85 (129)
T 2d8m_A 20 GKILQGVVVVLSGFQNPF-RSELRDKALELGAKYRPD--WTRD--------STH--LICAFANTPKYSQ-VLGLGGRIVR 85 (129)
T ss_dssp TTTSTTEEEEEESCCTTH-HHHHHHHHHHTTEEEESS--CCTT--------CCE--EEESSSSCHHHHH-HHHHTCEEEE
T ss_pred cccCCCeEEEEeCCCcHH-HHHHHHHHHHcCCEEeCC--cCCC--------CeE--EEecCCCChHHHH-HHHCCCcEec
Confidence 568999999997765432 468999999999997522 1111 112 2222222334433 3336899999
Q ss_pred hhHHHHHHHhCCCCCCcccCCCCCeEeeccCCCCcceeecCCcccccccCC
Q 007803 307 EKDLICAVLSGHLDPSVLISPSPPVLISSSCSTDETVVADSDAETEEETSP 357 (589)
Q Consensus 307 e~E~l~AIL~~~ldaS~L~~P~~~~~~~~~~~~d~t~~~ds~~~~~~~~~~ 357 (589)
+..|.+-|-.+. +-|..+|++....++ =.+++.|++.-.||
T Consensus 86 ~~Wl~d~~~~~~------~l~e~~Y~l~~~~~~----~~~~~~~~~~~~~~ 126 (129)
T 2d8m_A 86 KEWVLDCHRMRR------RLPSQRYLMAGPGSS----SEEDEASHSGGSGP 126 (129)
T ss_dssp THHHHHHHHTTS------CCCGGGGBCSSSSCC----SCCCSCCCCCCSCC
T ss_pred HHHHHHHHHhCC------cCChHhcccCCCCcC----CCCccCCccCCCCC
Confidence 999999887764 233445666553333 34777777665544
No 79
>1l7b_A DNA ligase; BRCT, autostructure, structural genomics, NESG, PSI, protein structure initiative, northeast structural genomics consortium; HET: DNA; NMR {Thermus thermophilus} SCOP: c.15.1.2
Probab=90.42 E-value=0.46 Score=40.54 Aligned_cols=75 Identities=16% Similarity=0.254 Sum_probs=50.5
Q ss_pred ccCcCCcEEEEcCCCcccchhhHHHHHHHcCceEEEeeecCCCCCCccccccCeEEEEeCCCChhhHHHHHhhCCCCccc
Q 007803 227 ENCMRGYTFLLDSSMKYKYGDQLQSLLEVSGAKTLSIESFCPSSQDSECVEHNSVVYVLPRKSEDCSKSILKLSSLSRVN 306 (589)
Q Consensus 227 ~~LF~G~TFIf~~~~qy~~~~~L~~lIe~aGGkvll~e~~~~~~~~~~~g~~~~vVlV~p~~w~~~~~~~~~l~glR~I~ 306 (589)
...|.|++|+|+..-.. -.+.+..+|+..||++.. .++..+.. ||......-.+ +.+...|.+.|+
T Consensus 5 ~~~l~G~~~v~TG~l~~-~R~e~~~~i~~~Gg~v~~--sVskkt~~----------LV~g~~~gsK~-~kA~~lgI~Ii~ 70 (92)
T 1l7b_A 5 GEALKGLTFVITGELSR-PREEVKALLRRLGAKVTD--SVSRKTSY----------LVVGENPGSKL-EKARALGVPTLT 70 (92)
T ss_dssp CCSSTTCEEECSTTTTS-CHHHHHHHHHHTTCEEES--CCSSSCCC----------BEECSSSSTTH-HHHHCSSSCCEE
T ss_pred CCCcCCcEEEEecCCCC-CHHHHHHHHHHcCCEEeC--cccCCeeE----------EEeCCCCChHH-HHHHHcCCcEEe
Confidence 35699999999887654 457999999999999852 22233222 22222222334 344556999999
Q ss_pred hhHHHHHHH
Q 007803 307 EKDLICAVL 315 (589)
Q Consensus 307 e~E~l~AIL 315 (589)
|.+|+..|-
T Consensus 71 E~~f~~~l~ 79 (92)
T 1l7b_A 71 EEELYRLLE 79 (92)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999998874
No 80
>3pc7_A DNA ligase 3; DNA repair, BRCT domain, protein:protein interactions, XRCC1 domain, DNA binding protein; HET: DNA MSE; 1.65A {Homo sapiens} SCOP: c.15.1.2 PDB: 3pc8_C* 1imo_A* 1in1_A* 3qvg_A*
Probab=88.42 E-value=0.46 Score=40.48 Aligned_cols=50 Identities=16% Similarity=0.203 Sum_probs=40.6
Q ss_pred hhHHHHHHhcCCeecccccc-cceEEEEeccccchhhHHHHHHcCCceechhHHHHHHhcc
Q 007803 137 APLQEKVSSIGAFITSKFCQ-ECTHILVQHHMRVKGELLDAIVAKKPLVDVSWLEVVAEKS 196 (589)
Q Consensus 137 ~~L~~~l~~LGg~vv~~ws~-~cTHLV~~~s~r~T~KlL~ALi~gkpIVtp~wl~aLa~~~ 196 (589)
..|+..+.+.||.++.++.. .+||+|.+ .- ...+..+|+|+|+-++.+++
T Consensus 32 ~~l~RyiiAfgG~v~~~~~~~~vTHvI~~-~~---------~~~~~~~V~p~WI~dcI~k~ 82 (88)
T 3pc7_A 32 SRLRRYFVAFDGDLVQEFDMTSATHVLGS-RD---------KNPAAQQVSPEWIWACIRKR 82 (88)
T ss_dssp HHHHHHHHHTTCEECCGGGGGGCSEEESC-CT---------TCTTSEEECHHHHHHHHHHT
T ss_pred hhheeeeeecCCEEecccCCCcCeEEecC-CC---------cCCCCcEEchHHHHHHHhCC
Confidence 57888899999999988875 89999984 21 35678899999998887654
No 81
>2ep8_A Pescadillo homolog 1; A/B/A 3 layers, nucleolus, ribosome biogenesis, DNA damage, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=83.08 E-value=0.8 Score=39.57 Aligned_cols=34 Identities=15% Similarity=0.332 Sum_probs=27.6
Q ss_pred CcccCcCCcEEEEcCCCcccchhhHHHHHHHcCceEE
Q 007803 225 TLENCMRGYTFLLDSSMKYKYGDQLQSLLEVSGAKTL 261 (589)
Q Consensus 225 ~R~~LF~G~TFIf~~~~qy~~~~~L~~lIe~aGGkvl 261 (589)
...+||+|++|++...... +.|.-+|.++||++.
T Consensus 8 ~~~~LF~g~~F~i~~e~p~---~~le~~I~~~GG~v~ 41 (100)
T 2ep8_A 8 KHKKLFEGLKFFLNREVPR---EALAFIIRSFGGEVS 41 (100)
T ss_dssp CSCCTTSSCEEECCSSSCH---HHHHHHHHHTTCEEE
T ss_pred chHHHcCCcEEEEecCCCH---HHHHHHHHHcCCEEE
Confidence 3468999999999765432 589999999999875
No 82
>4id3_A DNA repair protein REV1; BRCT domain, protein binding; HET: DNA; 1.97A {Saccharomyces cerevisiae S288C}
Probab=82.00 E-value=1.4 Score=36.03 Aligned_cols=81 Identities=12% Similarity=0.133 Sum_probs=49.2
Q ss_pred cCcccCcCCcEEEEcCCCcccchhhHHHHHHHcCceEEEeeecCCCCCCccccccCeEEEEeCCCChhhHHHHHhhCCCC
Q 007803 224 DTLENCMRGYTFLLDSSMKYKYGDQLQSLLEVSGAKTLSIESFCPSSQDSECVEHNSVVYVLPRKSEDCSKSILKLSSLS 303 (589)
Q Consensus 224 ~~R~~LF~G~TFIf~~~~qy~~~~~L~~lIe~aGGkvll~e~~~~~~~~~~~g~~~~vVlV~p~~w~~~~~~~~~l~glR 303 (589)
+....+|+|++|++..-.... ...|..+|+..||++...-. .... ..++ |........ .....+.+
T Consensus 2 ~~~~~~f~g~~~~i~g~~~~~-~~~l~~~i~~~GG~~~~~~~--~~~~------~THl--I~~~~~~~K---~~~~~~~~ 67 (92)
T 4id3_A 2 SQSSKIFKNCVIYINGYTKPG-RLQLHEMIVLHGGKFLHYLS--SKKT------VTHI--VASNLPLKK---RIEFANYK 67 (92)
T ss_dssp ----CTTTTCEEEECSCCSSC-HHHHHHHHHHTTCEEESSCC--CTTT------CCEE--ECSCCCHHH---HHHTTTSC
T ss_pred CccccccCCEEEEEeCCCCcC-HHHHHHHHHHCCCEEEEEec--CCCc------eEEE--EecCCCHHH---HHHcCCCC
Confidence 455789999999998633322 36899999999999863211 0000 1122 222222222 33446889
Q ss_pred ccchhHHHHHHHhCC
Q 007803 304 RVNEKDLICAVLSGH 318 (589)
Q Consensus 304 ~I~e~E~l~AIL~~~ 318 (589)
.|.+.-|.+-|-.|.
T Consensus 68 iV~~~Wi~dci~~~~ 82 (92)
T 4id3_A 68 VVSPDWIVDSVKEAR 82 (92)
T ss_dssp EECTHHHHHHHHHTS
T ss_pred EEcccHHHHHHHcCC
Confidence 999999999998874
No 83
>1l0b_A BRCA1; TANDEM-BRCT, three-helix bundle, unknown function; 2.30A {Rattus norvegicus} SCOP: c.15.1.3 c.15.1.3
Probab=81.32 E-value=1.4 Score=42.10 Aligned_cols=71 Identities=13% Similarity=0.097 Sum_probs=39.1
Q ss_pred hhHHHHHHhcCCeecccccc-----cceEEEE-eccc-cchhhHH-HHHHcCCceechhHHHHHHhccCCCCCCCCCCCC
Q 007803 137 APLQEKVSSIGAFITSKFCQ-----ECTHILV-QHHM-RVKGELL-DAIVAKKPLVDVSWLEVVAEKSIRTDFPGCNSHV 208 (589)
Q Consensus 137 ~~L~~~l~~LGg~vv~~ws~-----~cTHLV~-~~s~-r~T~KlL-~ALi~gkpIVtp~wl~aLa~~~~~~elPd~~dfl 208 (589)
..|+..+...||.++..... .++|+|+ .+.. ....++- .|...+.+||+++||.++...+ .+.+.+.|+
T Consensus 135 ~~l~~li~~~GG~v~~~~~~~~~~~~~~~~vvv~~~~~~~~~~~~~l~~~~~i~iVs~~WlldsI~~~---~~~~~~~Y~ 211 (229)
T 1l0b_A 135 DELERMLQLCGASVVKELPLLTRDTGAHPIVLVQPSAWTEDNDCPDIGQLCKGRLVMWDWVLDSISVY---RCRDLDAYL 211 (229)
T ss_dssp HHHHHHHHHTTCEEECSSSCGGGCCSSCCEEEEC-------------------CEEETHHHHHHHHTT---SCCCGGGGB
T ss_pred HHHHHHHHHCCCEEeCCcccccccCCCceEEEEcCCccchhhhHHHHHHHcCCeEeehhHHHHHHhcC---CcCCccceE
Confidence 78889999999999988754 3677544 2111 1122211 1234688999999998876543 234466675
Q ss_pred CC
Q 007803 209 TT 210 (589)
Q Consensus 209 Pp 210 (589)
.+
T Consensus 212 l~ 213 (229)
T 1l0b_A 212 VQ 213 (229)
T ss_dssp CC
T ss_pred cc
Confidence 33
No 84
>3u3z_A Microcephalin; DNA repair, cell cycle regulation, cell cycle; HET: SEP PTR; 1.50A {Homo sapiens} PDB: 3szm_A* 3t1n_A* 3sht_A 3shv_A*
Probab=80.35 E-value=1.5 Score=41.86 Aligned_cols=61 Identities=11% Similarity=0.042 Sum_probs=43.4
Q ss_pred hhHHHHHHhcCCeecccccccceEEEEeccccchhhHHHHHHcCCceechhHHHHHHhccCCCCCCCCCCCCC
Q 007803 137 APLQEKVSSIGAFITSKFCQECTHILVQHHMRVKGELLDAIVAKKPLVDVSWLEVVAEKSIRTDFPGCNSHVT 209 (589)
Q Consensus 137 ~~L~~~l~~LGg~vv~~ws~~cTHLV~~~s~r~T~KlL~ALi~gkpIVtp~wl~aLa~~~~~~elPd~~dflP 209 (589)
..|++.+...||.++.+.. .++++|.+ .+. +...+.|+|+|+|+-++...+ .+.+.++|++
T Consensus 137 ~~L~~lI~~~GG~v~~~~~-~~~iiI~~--~~~------~~~~~~~~V~p~Wi~DsI~~~---~llp~~~Y~~ 197 (199)
T 3u3z_A 137 AKLCELVHLCGGRVSQVPR-QASIVIGP--YSG------KKKATVKYLSEKWVLDSITQH---KVCAPENYLL 197 (199)
T ss_dssp HHHHHHHHHTTCCBCSSGG-GCSEEESC--CCS------CCCTTCEEECHHHHHHHHHHT---SCCCGGGGBC
T ss_pred HHHHHHHHHcCCEEeccCC-CCEEEEeC--Cch------hccCCCcEEChhHHHHHHHcC---CcCChHhccC
Confidence 7899999999999998763 56666652 222 235688999999997775543 2445667765
No 85
>1kzy_C Tumor suppressor P53-binding protein 1; tandem-BRCT and linker complexed with non-BRCT protein, three-helix bundle, parallel beta sheet; 2.50A {Homo sapiens} SCOP: c.15.1.4 c.15.1.4 PDB: 1gzh_B
Probab=75.85 E-value=5.8 Score=39.38 Aligned_cols=59 Identities=15% Similarity=0.071 Sum_probs=41.1
Q ss_pred hhHHHHHHhcCCeeccccc---------ccceEEEEeccccchhhHHHHHHcCCceechhHHHHHHhc
Q 007803 137 APLQEKVSSIGAFITSKFC---------QECTHILVQHHMRVKGELLDAIVAKKPLVDVSWLEVVAEK 195 (589)
Q Consensus 137 ~~L~~~l~~LGg~vv~~ws---------~~cTHLV~~~s~r~T~KlL~ALi~gkpIVtp~wl~aLa~~ 195 (589)
..+..++...||.++.... ...+|+|+.+.-....+..+|...+.|||+.+|+.++...
T Consensus 173 ~~~~~Il~~~Ga~vv~~~~s~~~~~d~~~~~~~viv~d~~~~~~~~~~a~~~~i~iVs~EWv~~sI~~ 240 (259)
T 1kzy_C 173 ELWSEILMTGGAASVKQHHSSAHNKDIALGVFDVVVTDPSCPASVLKCAEALQLPVVSQEWVIQCLIV 240 (259)
T ss_dssp HHHHHHHHHTTCSEEEEEESSSSCCCSCGGGCSEEEECTTCCHHHHHHHHHHTCCEECHHHHHHHHHH
T ss_pred HHHHHHHHhcCCEEEeccccchhhhhccCCCCeEEEECCCChHHHHHHHHhcCCCEecHHHHHHHHHh
Confidence 5677788999999886653 1345555423333345566888899999999999777544
No 86
>4gns_A Chitin biosynthesis protein CHS5; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=75.59 E-value=4.8 Score=38.58 Aligned_cols=56 Identities=21% Similarity=0.363 Sum_probs=42.6
Q ss_pred hHHHHHHhcCCeeccccc-ccceEEEEec--cccchhhHHHHHHcCCceechhHHHHHH
Q 007803 138 PLQEKVSSIGAFITSKFC-QECTHILVQH--HMRVKGELLDAIVAKKPLVDVSWLEVVA 193 (589)
Q Consensus 138 ~L~~~l~~LGg~vv~~ws-~~cTHLV~~~--s~r~T~KlL~ALi~gkpIVtp~wl~aLa 193 (589)
.+.+-++.+|+.-..... -++||+|.++ .-.-...++.|--+..|||.|+|+.++.
T Consensus 182 qisqclshigarplqrhvaidtthfvcndldneesneelirakhnnipivrpewvrace 240 (290)
T 4gns_A 182 QISQCLSHIGARPLQRHVAIDTTHFVCNDLDNEESNEELIRAKHNNIPIVRPEWVRACE 240 (290)
T ss_dssp HHHHHHHHTTCCCCBSSCCTTCCEEECSCCTTCTTCHHHHHHHHTTCCEECTHHHHHHH
T ss_pred cHHHHHHHhCCchhhheeeeecceeeecCCCcccchHHHHhhhccCCCccCHHHHHHHh
Confidence 345667889988665443 3789999952 2344578999999999999999999884
No 87
>3l3e_A DNA topoisomerase 2-binding protein 1; BRCT domain, DNA repair, cell cycle checkpoints, acetylation, cytoplasm, cytoskeleton, DNA damage; HET: DNA; 1.26A {Homo sapiens} PDB: 3pd7_A* 3jve_A*
Probab=70.70 E-value=14 Score=31.30 Aligned_cols=82 Identities=13% Similarity=0.139 Sum_probs=51.4
Q ss_pred cCcccCcCCcEEEEcCCCcccchhhHHHHHHHcCceEEEeeecCCCCCCccccccCeEEEEe--CCCChhhHHHHHhhCC
Q 007803 224 DTLENCMRGYTFLLDSSMKYKYGDQLQSLLEVSGAKTLSIESFCPSSQDSECVEHNSVVYVL--PRKSEDCSKSILKLSS 301 (589)
Q Consensus 224 ~~R~~LF~G~TFIf~~~~qy~~~~~L~~lIe~aGGkvll~e~~~~~~~~~~~g~~~~vVlV~--p~~w~~~~~~~~~l~g 301 (589)
+....+|+|.+|++...... -...|..+|+..||++... ++.. ..++|+ . +..-..++. .+...|
T Consensus 10 ~~~~~~l~g~~i~isg~~~~-~r~~l~~li~~~Gg~v~~~--~s~~--------~THlI~-~~~~~~~~~K~~-~A~~~g 76 (107)
T 3l3e_A 10 EEAPKPLHKVVVCVSKKLSK-KQSELNGIAASLGADYRRS--FDET--------VTHFIY-QGRPNDTNREYK-SVKERG 76 (107)
T ss_dssp ----CTTTTCEEEECGGGGG-GHHHHHHHHHHTTCEEESS--CCTT--------CCEEEC-CCCTTCCCHHHH-HHHHTT
T ss_pred ccccCCCCCeEEEEeCCChH-hHHHHHHHHHHcCCEEecc--ccCC--------ceEEEe-cCCCCCCCHHHH-HHHHCC
Confidence 45678999999999776542 3468999999999998521 1111 122322 1 111223443 344479
Q ss_pred CCccchhHHHHHHHhCC
Q 007803 302 LSRVNEKDLICAVLSGH 318 (589)
Q Consensus 302 lR~I~e~E~l~AIL~~~ 318 (589)
...|++.-|.+.+-.|.
T Consensus 77 i~IV~~~Wl~~c~~~~~ 93 (107)
T 3l3e_A 77 VHIVSEHWLLDCAQECK 93 (107)
T ss_dssp CEEECHHHHHHHHHHTS
T ss_pred CeEecHHHHHHHHHhCC
Confidence 99999999999888874
No 88
>3pc6_A DNA repair protein XRCC1; BRCT domain, protein:protein interactions, DNA L III-alpha BRCT2 domain, DNA binding protein; HET: DNA; 1.90A {Mus musculus} SCOP: c.15.1.1 PDB: 3pc8_A* 3qvg_B* 1cdz_A
Probab=69.52 E-value=15 Score=31.91 Aligned_cols=80 Identities=10% Similarity=0.044 Sum_probs=52.6
Q ss_pred ccCcCCcEEEEcCCCcccchhhHHHHHHHcCceEEEeeecCCCCCCccccccCeEEEEeCCCChhhHHHHHhhC-CCCcc
Q 007803 227 ENCMRGYTFLLDSSMKYKYGDQLQSLLEVSGAKTLSIESFCPSSQDSECVEHNSVVYVLPRKSEDCSKSILKLS-SLSRV 305 (589)
Q Consensus 227 ~~LF~G~TFIf~~~~qy~~~~~L~~lIe~aGGkvll~e~~~~~~~~~~~g~~~~vVlV~p~~w~~~~~~~~~l~-glR~I 305 (589)
..+|.|++|++....-..-...|...|.+.||.+..+.. .+-.-+|..+.|..+|...++.. +...|
T Consensus 5 pd~F~g~~f~l~~~~p~~~r~~l~ryiia~GG~v~~~~~------------~~vTHvIt~~~~d~~~~~a~~~~p~~~~V 72 (104)
T 3pc6_A 5 PDFFEGKHFFLYGEFPGDERRRLIRYVTAFNGELEDYMN------------ERVQFVITAQEWDPNFEEALMENPSLAFV 72 (104)
T ss_dssp CCTTTTCEEEEESCCSTTHHHHHHHHHHHTTCEECSSCC------------TTCCEEEESSCCCHHHHHHHTTCTTCEEE
T ss_pred chhhCCeEEEEcCCCcHHHHHHHHHHHHHcCCEEEcccC------------CCceEEEeCCCCChhHHHHhhhCCCCeEE
Confidence 469999999998776211124789999999999654321 11112334456888887655544 57777
Q ss_pred chhHHHHHHHhCC
Q 007803 306 NEKDLICAVLSGH 318 (589)
Q Consensus 306 ~e~E~l~AIL~~~ 318 (589)
...=|.+-|-.++
T Consensus 73 ~P~WI~~Ci~~~k 85 (104)
T 3pc6_A 73 RPRWIYSCNEKQK 85 (104)
T ss_dssp CHHHHHHHHHHTS
T ss_pred ccHHHHHHHhcCc
Confidence 7777777777664
No 89
>1t15_A Breast cancer type 1 susceptibility protein; protein-peptide complex, antitumor protein; HET: SEP; 1.85A {Homo sapiens} SCOP: c.15.1.3 c.15.1.3 PDB: 1jnx_X* 1t29_A* 1t2v_A* 1y98_A* 3coj_X* 3k0h_A* 3k0k_A* 3pxe_A* 3pxb_A 3pxc_X 1t2u_A 1n5o_X 3pxa_A 3k15_A* 3k16_A* 3pxd_A 2ing_X 1oqa_A
Probab=68.01 E-value=5.6 Score=37.28 Aligned_cols=70 Identities=14% Similarity=0.142 Sum_probs=42.5
Q ss_pred hhHHHHHHhcCCeeccccccc--c--eE-EEEeccccch--hhH-HHHHHcCCceechhHHHHHHhccCCCCCCCCCCCC
Q 007803 137 APLQEKVSSIGAFITSKFCQE--C--TH-ILVQHHMRVK--GEL-LDAIVAKKPLVDVSWLEVVAEKSIRTDFPGCNSHV 208 (589)
Q Consensus 137 ~~L~~~l~~LGg~vv~~ws~~--c--TH-LV~~~s~r~T--~Kl-L~ALi~gkpIVtp~wl~aLa~~~~~~elPd~~dfl 208 (589)
..|...+...||.++...... + +| +++-..-..+ .+. -.|...+.+||+++|+.++.... .+.+.+.|.
T Consensus 133 ~~l~~li~~~GG~v~~~~~~~~~~~~~~~ivi~~~~~~~~~~~~~~~a~~~~~~iV~~~Wi~dsi~~~---~~l~~~~Y~ 209 (214)
T 1t15_A 133 DQLEWMVQLCGASVVKELSSFTLGTGVHPIVVVQPDAWTEDNGFHAIGQMCEAPVVTREWVLDSVALY---QCQELDTYL 209 (214)
T ss_dssp HHHHHHHHHTTCEECCSGGGCCCSTTCCEEEEECGGGCSSCGGGGSSTTTCSSCEEEHHHHHHHHHHT---SCCCSGGGB
T ss_pred HHHHHHHHHCCCEEecCccccccCCCCccEEEECCCcccchhhHHHHHHhcCCcEEeccHHHHhHhhc---CcCCCccee
Confidence 788899999999999865431 1 24 4331111111 121 12445688999999998876543 245566675
Q ss_pred C
Q 007803 209 T 209 (589)
Q Consensus 209 P 209 (589)
+
T Consensus 210 l 210 (214)
T 1t15_A 210 I 210 (214)
T ss_dssp C
T ss_pred e
Confidence 4
No 90
>2ebw_A DNA repair protein REV1; A/B/A 3 layers, parallel beta-sheet, DNA replication, translession synthesis, TLS, DNA polymerase zeta, PCNA; HET: DNA; NMR {Homo sapiens}
Probab=66.80 E-value=7 Score=32.38 Aligned_cols=80 Identities=13% Similarity=0.175 Sum_probs=47.6
Q ss_pred cCcccCcCCcEEEEcCCCcccchhhHHHHHHHcCceEEEeeecCCCCCCccccccCeEEEEeCCCChhhHHHHHhhCCCC
Q 007803 224 DTLENCMRGYTFLLDSSMKYKYGDQLQSLLEVSGAKTLSIESFCPSSQDSECVEHNSVVYVLPRKSEDCSKSILKLSSLS 303 (589)
Q Consensus 224 ~~R~~LF~G~TFIf~~~~qy~~~~~L~~lIe~aGGkvll~e~~~~~~~~~~~g~~~~vVlV~p~~w~~~~~~~~~l~glR 303 (589)
+....+|+|.+|++....... ...|..+|+..||++..... +. . ..+ +|..+....++.. ..+..
T Consensus 7 ~~~~~lF~g~~~~isg~~~~~-~~~L~~~i~~~GG~~~~~~~--~~-~------~TH--lI~~~~~~~k~~~---~~~~~ 71 (97)
T 2ebw_A 7 GTSSTIFSGVAIYVNGYTDPS-AEELRKLMMLHGGQYHVYYS--RS-K------TTH--IIATNLPNAKIKE---LKGEK 71 (97)
T ss_dssp SCCCCTTTTCEEEECSSCSSC-HHHHHHHHHHTTCEECSSCC--SS-S------CCE--EECSCCCTTHHHH---TSSSC
T ss_pred CCCCCCCCCeEEEEeCCCccc-HHHHHHHHHHcCCEEeeecC--CC-C------CEE--EEecCCChHHHHH---hcCCC
Confidence 345689999999987543333 46899999999999642111 10 0 112 2222222223322 23778
Q ss_pred ccchhHHHHHHHhCC
Q 007803 304 RVNEKDLICAVLSGH 318 (589)
Q Consensus 304 ~I~e~E~l~AIL~~~ 318 (589)
.|...=|.+-|-.|.
T Consensus 72 iV~p~Wl~dci~~~~ 86 (97)
T 2ebw_A 72 VIRPEWIVESIKAGR 86 (97)
T ss_dssp CBCTHHHHHHHHHTS
T ss_pred EeChHHHHHHHHcCC
Confidence 888777788777764
No 91
>2cok_A Poly [ADP-ribose] polymerase-1; BRCT domain, DNA repair, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2le0_A
Probab=66.76 E-value=5.7 Score=35.08 Aligned_cols=75 Identities=13% Similarity=0.178 Sum_probs=46.9
Q ss_pred ccCcCCcEEEEcCCCcccchhhHHHHHHHcCceEEEeeecCCCCCCccccccCeEEEEeCCC---ChhhHHHHHhhCCCC
Q 007803 227 ENCMRGYTFLLDSSMKYKYGDQLQSLLEVSGAKTLSIESFCPSSQDSECVEHNSVVYVLPRK---SEDCSKSILKLSSLS 303 (589)
Q Consensus 227 ~~LF~G~TFIf~~~~qy~~~~~L~~lIe~aGGkvll~e~~~~~~~~~~~g~~~~vVlV~p~~---w~~~~~~~~~l~glR 303 (589)
...|.|++|+|+..-.. -.+.+..+|+..||++.. .++..+ -.||...+ ..-.+ .-++..|..
T Consensus 8 ~~~l~G~~~ViTG~l~~-~R~e~k~~ie~~Ggkv~~--sVskkT----------~~lV~g~~~e~~gsKl-~kA~~lgI~ 73 (113)
T 2cok_A 8 DKPLSNMKILTLGKLSR-NKDEVKAMIEKLGGKLTG--TANKAS----------LCISTKKEVEKMNKKM-EEVKEANIR 73 (113)
T ss_dssp CCSSSSCEEEECSCCSS-CHHHHHHHHHHTTCEEES--CSTTCS----------EEECCHHHHHHCCHHH-HHHHHTTCC
T ss_pred CCCcCCCEEEEEecCCC-CHHHHHHHHHHCCCEEcC--ccccCc----------cEEEECCCCCCCChHH-HHHHHCCCc
Confidence 35699999999988765 468999999999999851 111121 12222211 11222 445667999
Q ss_pred ccchhHHHHHHHh
Q 007803 304 RVNEKDLICAVLS 316 (589)
Q Consensus 304 ~I~e~E~l~AIL~ 316 (589)
.|+|. ++..+-.
T Consensus 74 IvsE~-~l~~~~~ 85 (113)
T 2cok_A 74 VVSED-FLQDVSA 85 (113)
T ss_dssp EECTH-HHHHHHS
T ss_pred EEeHH-HHHHHHh
Confidence 99998 4444443
No 92
>2vxb_A DNA repair protein RHP9; BRCT, nucleus, cell cycle, DNA damage, DNA replication inhibitor, phosphoprotein, checkpoint signalling; HET: DNA; 2.3A {Schizosaccharomyces pombe} PDB: 2vxc_A*
Probab=62.14 E-value=5.7 Score=39.06 Aligned_cols=105 Identities=11% Similarity=0.100 Sum_probs=60.0
Q ss_pred cCcCCcEEEEcCC--CcccchhhHHHHHHHcCceEEEe--ee-cCCCC-CCc---------cccccCeEEE-EeCC-CCh
Q 007803 228 NCMRGYTFLLDSS--MKYKYGDQLQSLLEVSGAKTLSI--ES-FCPSS-QDS---------ECVEHNSVVY-VLPR-KSE 290 (589)
Q Consensus 228 ~LF~G~TFIf~~~--~qy~~~~~L~~lIe~aGGkvll~--e~-~~~~~-~~~---------~~g~~~~vVl-V~p~-~w~ 290 (589)
++|+|+.|++... ..-.-...|..+|+..||+++.- .+ +.... ... .-...-++.+ |.+. .-.
T Consensus 1 ~lF~g~~F~ls~~~~~~~~~k~~L~~~I~~~GG~v~~~g~~~lf~~~~~~~~~~~~~~k~~~~~~~~~~t~lia~~~~rt 80 (241)
T 2vxb_A 1 LIFDDCVFAFSGPVHEDAYDRSALETVVQDHGGLVLDTGLRPLFNDPFKSKQKKLRHLKPQKRSKSWNQAFVVSDTFSRK 80 (241)
T ss_dssp CTTTTEEEEECCCSSTTSSCHHHHHHHHHHTTCEECTTCSGGGBCCSCC----CCCSCCBCGGGGGCSEEEEECSSCCCC
T ss_pred CCCCCcEEEEecCCCCchhhHHHHHHHHHHCCCEEecCcchhhccCccccccccccccccccccccccceEEEcCCCCCc
Confidence 4899999999877 21123468999999999998631 00 11111 000 0001113444 4443 223
Q ss_pred hhHHHHHhhCCCCccchhHHHHHHHhCCCCCCcccCCCCCeEeeccCCC
Q 007803 291 DCSKSILKLSSLSRVNEKDLICAVLSGHLDPSVLISPSPPVLISSSCST 339 (589)
Q Consensus 291 ~~~~~~~~l~glR~I~e~E~l~AIL~~~ldaS~L~~P~~~~~~~~~~~~ 339 (589)
..+.+.+. .|...|...=|.+.|-.|.+ + |..+|++.+..|+
T Consensus 81 ~K~~~ala-~gipiV~~~Wi~dc~~~~~~----~--~~~~ylL~~~~s~ 122 (241)
T 2vxb_A 81 VKYLEALA-FNIPCVHPQFIKQCLKMNRV----V--DFSPYLLASGYSH 122 (241)
T ss_dssp HHHHHHHH-HTCCEECTHHHHHHHHHTSC----C--CSGGGBBEEEEET
T ss_pred HHHHHHHH-cCCCEecHHHHHHHHHcCCc----C--ChhhccCCCCcch
Confidence 44444333 48888888777777777642 2 5567888765543
No 93
>1dgs_A DNA ligase; AMP complex, NAD+-dependent; HET: DNA AMP; 2.90A {Thermus filiformis} SCOP: a.60.2.2 b.40.4.6 d.142.2.2 PDB: 1v9p_A*
Probab=62.08 E-value=1.6 Score=49.49 Aligned_cols=57 Identities=11% Similarity=0.087 Sum_probs=0.0
Q ss_pred chhHHHHHHhcCCeecccccccceEEEEeccccchhhHHHHHHcCCceechhHHHHHHh
Q 007803 136 NAPLQEKVSSIGAFITSKFCQECTHILVQHHMRVKGELLDAIVAKKPLVDVSWLEVVAE 194 (589)
Q Consensus 136 ~~~L~~~l~~LGg~vv~~ws~~cTHLV~~~s~r~T~KlL~ALi~gkpIVtp~wl~aLa~ 194 (589)
...+++.+..+||+++.+.+..+++||+ +-....|+-.|.-.|.+|++.++|-++..
T Consensus 603 R~e~~~~i~~~Ggkv~~sVSkkTd~lV~--G~~~gsKl~KA~~lgI~Ii~E~~f~~~l~ 659 (667)
T 1dgs_A 603 REEVKALLGRLGAKVTDSVSRKTSYLVV--GENPGSKLEKARALGVAVLTEEEFWRFLK 659 (667)
T ss_dssp -----------------------------------------------------------
T ss_pred HHHHHHHHHHcCCEEcCcccCCeeEEEE--CCCCChHHHHHHHCCCeEEeHHHHHHHHh
Confidence 3677889999999999999999999999 45567899999999999999997756543
No 94
>2etx_A Mediator of DNA damage checkpoint protein 1; tandem BRCT domains histone gamma-H2AX, cell cycle; 1.33A {Homo sapiens} PDB: 2azm_A* 3k05_A* 2ado_A
Probab=61.46 E-value=17 Score=34.43 Aligned_cols=67 Identities=12% Similarity=0.071 Sum_probs=43.5
Q ss_pred hhHHHHHHhcCCeeccccccc--ceEEEEeccccchhhHHHHHHcCCceechhHHHHHHhccCCCCCCCCCCCC
Q 007803 137 APLQEKVSSIGAFITSKFCQE--CTHILVQHHMRVKGELLDAIVAKKPLVDVSWLEVVAEKSIRTDFPGCNSHV 208 (589)
Q Consensus 137 ~~L~~~l~~LGg~vv~~ws~~--cTHLV~~~s~r~T~KlL~ALi~gkpIVtp~wl~aLa~~~~~~elPd~~dfl 208 (589)
..|++.+...||.++...... -+|+|+. ...-..+.-.++-.|.|||+++|+-+....+ .+ +++.|.
T Consensus 132 ~~l~~li~~~GG~v~~~~~~~~~~~~ivI~-~~~d~~~~~~~~~~~i~vvs~eWi~~sI~~q---~l-d~e~y~ 200 (209)
T 2etx_A 132 PQMGEIISCCGGTYLPSMPRSYKPQRVVIT-CPQDFPHCSIPLRVGLPLLSPEFLLTGVLKQ---EA-KPEAFV 200 (209)
T ss_dssp HHHHHHHHHTTCEECSSCCCSCCTTEEEEC-CGGGGGGCHHHHHHTCCEECTHHHHHHHHHT---CC-CGGGGB
T ss_pred HHHHHHHHHCCCEEECCCCCCCCCceEEEE-CcccHHHHHHHHHCCCeEEcHHHHHHHHHhc---cc-ChHHhe
Confidence 778899999999998754332 2577772 2222333445677899999999986654332 13 555563
No 95
>1wf6_A Similar to S.pombe -RAD4+/CUT5+product (A40727); BRCT, topoisomerase II binding protein, checkpoint; NMR {Homo sapiens} SCOP: c.15.1.5
Probab=59.90 E-value=8.3 Score=34.26 Aligned_cols=82 Identities=18% Similarity=0.153 Sum_probs=47.8
Q ss_pred cCcccCcCCcEEEEcCCCcccchhhHHHHHHHcCceEEEeeecCCCCCCccccccCeEEEEeCCCChhhHHHHHhh--CC
Q 007803 224 DTLENCMRGYTFLLDSSMKYKYGDQLQSLLEVSGAKTLSIESFCPSSQDSECVEHNSVVYVLPRKSEDCSKSILKL--SS 301 (589)
Q Consensus 224 ~~R~~LF~G~TFIf~~~~qy~~~~~L~~lIe~aGGkvll~e~~~~~~~~~~~g~~~~vVlV~p~~w~~~~~~~~~l--~g 301 (589)
.....+|+|.+|++..-.... ...|..+|+..||++...- .+. --++|+ .. ...++...... .+
T Consensus 35 ~~~~~lF~g~~i~i~G~~~~~-~~~L~~~i~~~Gg~v~~~l--~~~--------vTHvI~--~~-~~~~~~~~~~~~~~~ 100 (132)
T 1wf6_A 35 QAPEDLLDGCRIYLCGFSGRK-LDKLRRLINSGGGVRFNQL--NED--------VTHVIV--GD-YDDELKQFWNKSAHR 100 (132)
T ss_dssp CCCTTTTTTCEEEEESCCSHH-HHHHHHHHHHTTCEEESSC--CSS--------CCEEEE--SS-CCSHHHHHHHHSCCC
T ss_pred cccccccCCEEEEEECCChHH-HHHHHHHHHHCCCEEeCcC--CCC--------CeEEEE--CC-chHHHHHHHHhhCCC
Confidence 445689999999997332211 2579999999999986321 111 123333 21 12334333332 24
Q ss_pred CCccchhHHHHHHHhCCC
Q 007803 302 LSRVNEKDLICAVLSGHL 319 (589)
Q Consensus 302 lR~I~e~E~l~AIL~~~l 319 (589)
...|...=|.+-|-.|.+
T Consensus 101 ~~iV~~~Wv~dsi~~~~l 118 (132)
T 1wf6_A 101 PHVVGAKWLLECFSKGYM 118 (132)
T ss_dssp CCEEEHHHHHHHHHHSSC
T ss_pred CeEechHHHHHHHHcCCc
Confidence 577777777777776654
No 96
>2l42_A DNA-binding protein RAP1; BRCT domain, protein binding; NMR {Saccharomyces cerevisiae}
Probab=57.63 E-value=5.7 Score=34.73 Aligned_cols=61 Identities=10% Similarity=0.158 Sum_probs=45.5
Q ss_pred hhHHHHHHhcCCeecccccccc--eEEEEeccccchhhHHHHHHcCCceechhHHHHHHhccCCCCCCCCCCCCCC
Q 007803 137 APLQEKVSSIGAFITSKFCQEC--THILVQHHMRVKGELLDAIVAKKPLVDVSWLEVVAEKSIRTDFPGCNSHVTT 210 (589)
Q Consensus 137 ~~L~~~l~~LGg~vv~~ws~~c--THLV~~~s~r~T~KlL~ALi~gkpIVtp~wl~aLa~~~~~~elPd~~dflPp 210 (589)
+.|+.++...||.|+.+..++. -++|++ .+-.| +.|.|+|.|+.++...+. |-+..+|+-|
T Consensus 33 d~L~~lI~~nGG~Vl~~lP~~s~~~~yVVS-pyN~t---------~LpTVtpTYI~aC~~~nT---LLnv~~YLvp 95 (106)
T 2l42_A 33 DQLARLIRANGGEVLDSKPRESKENVFIVS-PYNHT---------NLPTVTPTYIKACCQSNS---LLNMENYLVP 95 (106)
T ss_dssp HHHHHHHHTTTSCCCEECCCCCSSCCCCBC-TTCCC---------SSSBCCTTHHHHHHHSTT---SCGGGGCCBC
T ss_pred HHHHHHHHhcCcEEhhhCcccccCCeEEEe-CCCCC---------CCccccHHHHHHHHhcCc---eecccccccC
Confidence 8899999999999998776544 366773 34444 679999999999986653 4566677633
No 97
>2owo_A DNA ligase; protein-DNA complex, ligase-DNA complex; HET: DNA OMC AMP; 2.30A {Escherichia coli}
Probab=54.49 E-value=2.6 Score=47.86 Aligned_cols=55 Identities=9% Similarity=0.117 Sum_probs=0.0
Q ss_pred hhHHHHHHhcCCeecccccccceEEEEeccccchhhHHHHHHcCCceechhHHHHHH
Q 007803 137 APLQEKVSSIGAFITSKFCQECTHILVQHHMRVKGELLDAIVAKKPLVDVSWLEVVA 193 (589)
Q Consensus 137 ~~L~~~l~~LGg~vv~~ws~~cTHLV~~~s~r~T~KlL~ALi~gkpIVtp~wl~aLa 193 (589)
..+++.+..+||+++.+.+..+++||+ +-....|+-.|.-.|.||++.++|.++.
T Consensus 615 ~e~~~~i~~~Ggkv~~sVSkkTd~lV~--G~~~gsKl~KA~~lgI~Ii~E~~f~~~l 669 (671)
T 2owo_A 615 DDAKARLVELGAKVAGSVSKKTDLVIA--GEAAGSKLAKAQELGIEVIDEAEMLRLL 669 (671)
T ss_dssp ---------------------------------------------------------
T ss_pred HHHHHHHHHcCCEEeCcccCceeEEEE--CCCCChHHHHHHHCCCcEEcHHHHHHHh
Confidence 677889999999999999999999999 4556789999999999999999876553
No 98
>3pc7_A DNA ligase 3; DNA repair, BRCT domain, protein:protein interactions, XRCC1 domain, DNA binding protein; HET: DNA MSE; 1.65A {Homo sapiens} SCOP: c.15.1.2 PDB: 3pc8_C* 1imo_A* 1in1_A* 3qvg_A*
Probab=53.39 E-value=6.2 Score=33.51 Aligned_cols=37 Identities=14% Similarity=0.152 Sum_probs=29.5
Q ss_pred cCcccCcCCcEEEEcCCCcccchhhHHHHHHHcCceEEE
Q 007803 224 DTLENCMRGYTFLLDSSMKYKYGDQLQSLLEVSGAKTLS 262 (589)
Q Consensus 224 ~~R~~LF~G~TFIf~~~~qy~~~~~L~~lIe~aGGkvll 262 (589)
..-..+|.|++|++....... ..|+-.|.+.||.++.
T Consensus 11 ~~LpdiFsg~~~~l~~~v~~~--~~l~RyiiAfgG~v~~ 47 (88)
T 3pc7_A 11 KVLLDIFTGVRLYLPPSTPDF--SRLRRYFVAFDGDLVQ 47 (88)
T ss_dssp CCCCCCSTTCEECCCTTSTTH--HHHHHHHHHTTCEECC
T ss_pred CcCChhhcCeEEEccCCcCch--hhheeeeeecCCEEec
Confidence 345789999999998876532 5788999999999854
No 99
>2nte_A BARD-1, BRCA1-associated ring domain protein 1; BRCT, ring finger, zinc-binding protein, ubiquitin LI antitumor protein; 1.90A {Homo sapiens} PDB: 3fa2_A 2r1z_A
Probab=50.87 E-value=7.9 Score=36.62 Aligned_cols=57 Identities=19% Similarity=0.152 Sum_probs=35.8
Q ss_pred hhHHHHHHhcCCeeccc-c----------------------cccceEEEEecc-ccchhhHHHHHHcCCceechhHHHHH
Q 007803 137 APLQEKVSSIGAFITSK-F----------------------CQECTHILVQHH-MRVKGELLDAIVAKKPLVDVSWLEVV 192 (589)
Q Consensus 137 ~~L~~~l~~LGg~vv~~-w----------------------s~~cTHLV~~~s-~r~T~KlL~ALi~gkpIVtp~wl~aL 192 (589)
..|++.+...||.++.. . ...|||+++... .+.-+. .+...+.++|+++||-++
T Consensus 122 ~~l~~lI~~~GG~v~~~~p~~~~~~~~~~~~v~~~~~~~~~~~~~t~~iv~~~~~~~~~~--~~~~~~v~~V~~~Wl~dc 199 (210)
T 2nte_A 122 DNLIKLVTAGGGQILSRKPKPDSDVTQTINTVAYHARPDSDQRFCTQYIIYEDLCNYHPE--RVRQGKVWKAPSSWFIDC 199 (210)
T ss_dssp HHHHHHHHHTTCEEESSCCCGGGCGGGSSCCCCTTSCTTCGGGTCCEEEEECSCSSCCCS--CSEETTEEEEEHHHHHHH
T ss_pred HHHHHHHHHCCCEEEecCCCCccccccccceeeeccCCCcccccceEEEEeccccccCHH--HHhccCcccccHHHHHHH
Confidence 88999999999998751 1 145899988421 110011 122234489999998777
Q ss_pred Hhc
Q 007803 193 AEK 195 (589)
Q Consensus 193 a~~ 195 (589)
...
T Consensus 200 I~~ 202 (210)
T 2nte_A 200 VMS 202 (210)
T ss_dssp HHH
T ss_pred HHh
Confidence 543
No 100
>3al2_A DNA topoisomerase 2-binding protein 1; BRCT domain, protein binding, DNA binding protein; HET: DNA MSE; 2.00A {Homo sapiens} PDB: 3al3_A*
Probab=42.73 E-value=25 Score=34.36 Aligned_cols=68 Identities=15% Similarity=0.173 Sum_probs=44.9
Q ss_pred hhHHHHHHhcCCeeccccc----ccceEEEEeccccch-----hhHHHHHHcCCceechhHHHHHHhccCCCCCCCCCCC
Q 007803 137 APLQEKVSSIGAFITSKFC----QECTHILVQHHMRVK-----GELLDAIVAKKPLVDVSWLEVVAEKSIRTDFPGCNSH 207 (589)
Q Consensus 137 ~~L~~~l~~LGg~vv~~ws----~~cTHLV~~~s~r~T-----~KlL~ALi~gkpIVtp~wl~aLa~~~~~~elPd~~df 207 (589)
..|+..+..-||.|+..-. .+.||.+++ ....+ .++..+.-.|.+||+++||-+....+ ++|+..+|
T Consensus 151 ~~l~~ii~agGg~vl~~~~~~~~~~~t~~~vd-~~~~~~~~~~~~~~~~~~~~i~~v~~ewlld~i~~~---~~~~~~~y 226 (235)
T 3al2_A 151 AGFKRLLQSGGAKVLPGHSVPLFKEATHLFSD-LNKLKPDDSGVNIAEAAAQNVYCLRTEYIADYLMQE---SPPHVENY 226 (235)
T ss_dssp HHHHHHHHHTTCEECSSCCGGGGGGCSEEEEC-C--------CCCHHHHHHTTCEEEETHHHHHHHHCS---SCCCHHHH
T ss_pred HHHHHHHHcCCcEEecCCCCCccccCceEEEe-cccCCccchhHHHHHHHHcCCcEEcHHHHHHHHhcC---CCCChhhe
Confidence 6788899999999986421 356898884 21211 24555667889999999987765433 35566666
Q ss_pred C
Q 007803 208 V 208 (589)
Q Consensus 208 l 208 (589)
.
T Consensus 227 ~ 227 (235)
T 3al2_A 227 C 227 (235)
T ss_dssp B
T ss_pred E
Confidence 4
No 101
>2ket_A Cathelicidin-6; antimicrobial peptide, antibiotic, antimicrobial, fungicide, pyrrolidone carboxylic acid, secreted; NMR {Bos taurus}
Probab=38.47 E-value=3.7 Score=26.84 Aligned_cols=8 Identities=75% Similarity=1.256 Sum_probs=6.6
Q ss_pred cccccccc
Q 007803 511 NFKRFRKT 518 (589)
Q Consensus 511 ~fk~f~k~ 518 (589)
-||||||+
T Consensus 2 rfkrfrkk 9 (27)
T 2ket_A 2 RFKRFRKK 9 (27)
T ss_dssp CHHHHHHH
T ss_pred cHHHHHHH
Confidence 48999986
No 102
>3qbz_A DDK kinase regulatory subunit DBF4; FHA domain,RAD53, replication checkpoint, cell cycle; 2.69A {Saccharomyces cerevisiae}
Probab=35.21 E-value=39 Score=31.73 Aligned_cols=27 Identities=26% Similarity=0.322 Sum_probs=23.4
Q ss_pred hHHHHHHhcCCeecccccccceEEEEe
Q 007803 138 PLQEKVSSIGAFITSKFCQECTHILVQ 164 (589)
Q Consensus 138 ~L~~~l~~LGg~vv~~ws~~cTHLV~~ 164 (589)
.|+..+..||+.++.-++.++||+|..
T Consensus 89 llkr~f~~LGA~I~~FFd~~VTiVIT~ 115 (160)
T 3qbz_A 89 LLKRGFLTLGAQITQFFDTTVTIVITR 115 (160)
T ss_dssp HHHHHHHTTTCEEESSCCTTCCEEEES
T ss_pred HHHHHHHHcCCEeeeeccCCeEEEEec
Confidence 355678899999999999999999993
No 103
>3sqd_A PAX-interacting protein 1; tandem BRCT domains, cell cycle; HET: SEP; 2.15A {Homo sapiens}
Probab=33.14 E-value=89 Score=29.97 Aligned_cols=58 Identities=12% Similarity=0.037 Sum_probs=39.1
Q ss_pred hhHHHHHHhcCCeeccccccc------------ceEEEEeccccchhhHHHHHHcCCceechhHH-HHHHhc
Q 007803 137 APLQEKVSSIGAFITSKFCQE------------CTHILVQHHMRVKGELLDAIVAKKPLVDVSWL-EVVAEK 195 (589)
Q Consensus 137 ~~L~~~l~~LGg~vv~~ws~~------------cTHLV~~~s~r~T~KlL~ALi~gkpIVtp~wl-~aLa~~ 195 (589)
..|++.+...||.++...... ...+|.+ .-.-+.....++..|.||++.+|+ +.+.+.
T Consensus 139 ~~l~~lI~~~GG~v~~~~p~~~~~~~~~~~~~~~~~ivis-~~~d~~~~~~~~~~~~~v~s~E~il~~Il~q 209 (219)
T 3sqd_A 139 STMKAIVECAGGKVLSKQPSFRKLMEHKQNSSLSEIILIS-CENDLHLCREYFARGIDVHNAEFVLTGVLTQ 209 (219)
T ss_dssp HHHHHHHHHTTCEEESSCCCHHHHHHHHHCTTSCEEEEEE-CGGGGGGGHHHHHTTCCCEETHHHHHHHHHT
T ss_pred HHHHHHHHHCCCEEECCCCchHHhhhhhcccCCCCEEEEe-cccHHHHHHHHHHCCCcEEeHHHHHHHHHhe
Confidence 788999999999998764321 1233442 334445555566789999999996 555544
No 104
>1dgs_A DNA ligase; AMP complex, NAD+-dependent; HET: DNA AMP; 2.90A {Thermus filiformis} SCOP: a.60.2.2 b.40.4.6 d.142.2.2 PDB: 1v9p_A*
Probab=29.44 E-value=11 Score=42.67 Aligned_cols=76 Identities=14% Similarity=0.210 Sum_probs=0.0
Q ss_pred ccCcCCcEEEEcCCCcccchhhHHHHHHHcCceEEEeeecCCCCCCccccccCeEEEEeCCCChhhHHHHHhhCCCCccc
Q 007803 227 ENCMRGYTFLLDSSMKYKYGDQLQSLLEVSGAKTLSIESFCPSSQDSECVEHNSVVYVLPRKSEDCSKSILKLSSLSRVN 306 (589)
Q Consensus 227 ~~LF~G~TFIf~~~~qy~~~~~L~~lIe~aGGkvll~e~~~~~~~~~~~g~~~~vVlV~p~~w~~~~~~~~~l~glR~I~ 306 (589)
.+.|.|++|+|+..-.. -.+.+..+|+..||++..- ++..+. .||......-++ ..++..|.+.|+
T Consensus 585 ~~~l~G~~~v~TG~l~~-~R~e~~~~i~~~Ggkv~~s--VSkkTd----------~lV~G~~~gsKl-~KA~~lgI~Ii~ 650 (667)
T 1dgs_A 585 SDLLSGLTFVLTGELSR-PREEVKALLGRLGAKVTDS--VSRKTS----------YLVVGENPGSKL-EKARALGVAVLT 650 (667)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccCCCEEEEeCCCCC-CHHHHHHHHHHcCCEEcCc--ccCCee----------EEEECCCCChHH-HHHHHCCCeEEe
Confidence 56799999999887654 4568999999999997521 122221 222221222222 334555999999
Q ss_pred hhHHHHHHHh
Q 007803 307 EKDLICAVLS 316 (589)
Q Consensus 307 e~E~l~AIL~ 316 (589)
|.+|+..|-.
T Consensus 651 E~~f~~~l~~ 660 (667)
T 1dgs_A 651 EEEFWRFLKE 660 (667)
T ss_dssp ----------
T ss_pred HHHHHHHHhc
Confidence 9999988754
No 105
>3oq4_A DBF4, protein DNA52; DDK, BRCT, RAD53, replication checkpoint, FHA domain, regula subunit of DDK, CDC7, phosphorylation, nuclear; 2.40A {Saccharomyces cerevisiae}
Probab=28.36 E-value=38 Score=30.93 Aligned_cols=53 Identities=17% Similarity=0.103 Sum_probs=36.5
Q ss_pred hhHHHHHHhcCCeecccccccceEEEEecc------ccchhhHHHHHHcCCceechhHH
Q 007803 137 APLQEKVSSIGAFITSKFCQECTHILVQHH------MRVKGELLDAIVAKKPLVDVSWL 189 (589)
Q Consensus 137 ~~L~~~l~~LGg~vv~~ws~~cTHLV~~~s------~r~T~KlL~ALi~gkpIVtp~wl 189 (589)
+.|+..+..||+.|+.=+..++||+|..-. +..+--+.-|--.|.-|=..+=+
T Consensus 33 ~llk~~f~~LGa~I~~FFd~~VTiiITrR~~~~~~~~p~~DIL~rAr~~~mKIWs~EKl 91 (134)
T 3oq4_A 33 DLLKRGFLTLGAQITQFFDTTVTIVITRRSVENIYLLKDTDILSRAKKNYMKVWSYEKA 91 (134)
T ss_dssp HHHHHHHHHTTCEEESSCCTTCCEEEESSCGGGGGGSCTTSHHHHHHHTTCEEEEHHHH
T ss_pred HHHHHHHHHcCCEEeeecCCceEEEEeCCcCcccccCCcchHHHHHHHcCCeeeeHHHH
Confidence 778888999999999999999999999411 12222344455556666555533
No 106
>2owo_A DNA ligase; protein-DNA complex, ligase-DNA complex; HET: DNA OMC AMP; 2.30A {Escherichia coli}
Probab=27.46 E-value=13 Score=42.25 Aligned_cols=75 Identities=13% Similarity=0.164 Sum_probs=0.0
Q ss_pred ccCcCCcEEEEcCCCcccchhhHHHHHHHcCceEEEeeecCCCCCCccccccCeEEEEeCCCChhhHHHHHhhCCCCccc
Q 007803 227 ENCMRGYTFLLDSSMKYKYGDQLQSLLEVSGAKTLSIESFCPSSQDSECVEHNSVVYVLPRKSEDCSKSILKLSSLSRVN 306 (589)
Q Consensus 227 ~~LF~G~TFIf~~~~qy~~~~~L~~lIe~aGGkvll~e~~~~~~~~~~~g~~~~vVlV~p~~w~~~~~~~~~l~glR~I~ 306 (589)
...|.|++|+|+..-..--.+.+..+|+..||++..- ++..+. .||......-++ .-++..|.+.|+
T Consensus 595 ~~~l~G~~~v~TG~l~~~~R~e~~~~i~~~Ggkv~~s--VSkkTd----------~lV~G~~~gsKl-~KA~~lgI~Ii~ 661 (671)
T 2owo_A 595 DSPFAGKTVVLTGSLSQMSRDDAKARLVELGAKVAGS--VSKKTD----------LVIAGEAAGSKL-AKAQELGIEVID 661 (671)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCcccCcEEEEcCCCCCCCHHHHHHHHHHcCCEEeCc--ccCcee----------EEEECCCCChHH-HHHHHCCCcEEc
Confidence 4679999999998765322468899999999997521 122222 222221122222 334555999999
Q ss_pred hhHHHHHH
Q 007803 307 EKDLICAV 314 (589)
Q Consensus 307 e~E~l~AI 314 (589)
|.+|+.-|
T Consensus 662 E~~f~~~l 669 (671)
T 2owo_A 662 EAEMLRLL 669 (671)
T ss_dssp --------
T ss_pred HHHHHHHh
Confidence 99998754
No 107
>2k9x_A Tburm1, uncharacterized protein; unknown function; NMR {Trypanosoma brucei}
Probab=27.01 E-value=20 Score=31.40 Aligned_cols=26 Identities=27% Similarity=0.427 Sum_probs=21.7
Q ss_pred eEEeCcCCCceeeeccCCceEEccCCCeEEE
Q 007803 82 TFINKNLGSKEKVHEFPNKEATLKDGDLVSF 112 (589)
Q Consensus 82 TfVNg~~~~~ekI~~~~g~~~~L~~GD~I~f 112 (589)
.+||+ ..+.+..|..+.|++||.|.|
T Consensus 70 VLVNg-----~d~e~l~gldt~L~dgD~V~f 95 (110)
T 2k9x_A 70 VLVNS-----CDAEVVGGMDYVLNDGDTVEF 95 (110)
T ss_dssp EEESS-----SBHHHHTSSCCCCCSSCEEEE
T ss_pred EEECC-----eeeeccCCcccCCCCcCEEEE
Confidence 68999 566655678999999999988
No 108
>3oq0_A DBF4, protein DNA52; DDK, BRCT, RAD53, replication checkpoint, FHA domain, regula subunit of DDK, CDC7, phosphorylation, nuclear; 2.70A {Saccharomyces cerevisiae}
Probab=24.78 E-value=44 Score=31.06 Aligned_cols=54 Identities=17% Similarity=0.091 Sum_probs=37.0
Q ss_pred hhHHHHHHhcCCeecccccccceEEEEec------cccchhhHHHHHHcCCceechhHHH
Q 007803 137 APLQEKVSSIGAFITSKFCQECTHILVQH------HMRVKGELLDAIVAKKPLVDVSWLE 190 (589)
Q Consensus 137 ~~L~~~l~~LGg~vv~~ws~~cTHLV~~~------s~r~T~KlL~ALi~gkpIVtp~wl~ 190 (589)
+.|+..+..||+.|+.=|..++||+|..- .+..+--+.-|--.|.-|=..+=+.
T Consensus 50 ~llkk~f~~LGa~I~~FFd~~VTiIITrR~~~~~~~yp~~DIL~rAr~~~mKIWs~EKl~ 109 (151)
T 3oq0_A 50 DLLKRGFLTLGAQITQFFDTTVTIVITRRSVENIYLLKDTDILSRAKKNYMKVWSYEKAA 109 (151)
T ss_dssp HHHHHHHHHHTCEEESSCCTTCCEEEESSCGGGGGGSCTTSHHHHHHHTTCEEEEHHHHH
T ss_pred HHHHHHHHHcCCEEeeecCCceEEEEeCCcCcccccCCcchHHHHHHHcCCeeecHHHHH
Confidence 66778899999999999999999999941 1222223444555566665555343
No 109
>3ef0_A RNA polymerase II subunit A C-terminal domain phosphatase; CTD, FCPH, BRCT, hydrolase, ALF4, transition state analog, cobalt, magnesium; 2.10A {Schizosaccharomyces pombe}
Probab=22.58 E-value=1.8e+02 Score=30.40 Aligned_cols=82 Identities=10% Similarity=0.140 Sum_probs=51.6
Q ss_pred cCcccCcCCcEEEEcCCCccc---chhhHHHHHHHcCceEEEeeecCCCCCCccccccCeEEEEeCCCChhhHHHHHhhC
Q 007803 224 DTLENCMRGYTFLLDSSMKYK---YGDQLQSLLEVSGAKTLSIESFCPSSQDSECVEHNSVVYVLPRKSEDCSKSILKLS 300 (589)
Q Consensus 224 ~~R~~LF~G~TFIf~~~~qy~---~~~~L~~lIe~aGGkvll~e~~~~~~~~~~~g~~~~vVlV~p~~w~~~~~~~~~l~ 300 (589)
..|..+|+|.+|+|....... -...+..+++..||++..- ++.. ..++|+- .....++....+..
T Consensus 277 ~lk~~~L~G~~ivfSG~~~~~~~~~~~~l~~l~~~lGa~v~~~--vs~~--------vTHLVa~--~~~t~K~~~A~~~~ 344 (372)
T 3ef0_A 277 KMKQKVLKGCRLLFSGVIPLGVDVLSSDIAKWAMSFGAEVVLD--FSVP--------PTHLIAA--KIRTEKVKKAVSMG 344 (372)
T ss_dssp HHHTTTSTTCEEEEESSSCTTSCTTTSHHHHHHHHTTCEEESS--SSSC--------CSEEEEC--SCCCHHHHHHHHSS
T ss_pred HHHhhhcCCcEEEEecccCCCcchhHHHHHHHHHHcCCEEeCc--CCCC--------ceEEEEc--CCCchHHHHHHhcC
Confidence 557789999999996653100 0147999999999998521 1111 1234432 22334454444434
Q ss_pred CCCccchhHHHHHHHhC
Q 007803 301 SLSRVNEKDLICAVLSG 317 (589)
Q Consensus 301 glR~I~e~E~l~AIL~~ 317 (589)
|...|++.-|.+.+-.+
T Consensus 345 ~I~IV~~~Wl~~c~~~~ 361 (372)
T 3ef0_A 345 NIKVVKLNWLTESLSQW 361 (372)
T ss_dssp SCCEEEHHHHHHHHHTT
T ss_pred CCEEEcHHHHHHHHHhC
Confidence 78999999998888665
No 110
>1wgk_A Riken cDNA 2900073H19 protein; THis domain, ubiqutin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.3.3 PDB: 1xo3_A
Probab=22.02 E-value=23 Score=31.13 Aligned_cols=26 Identities=23% Similarity=0.326 Sum_probs=21.2
Q ss_pred eEEeCcCCCceeeeccCCceEEccCCCeEEE
Q 007803 82 TFINKNLGSKEKVHEFPNKEATLKDGDLVSF 112 (589)
Q Consensus 82 TfVNg~~~~~ekI~~~~g~~~~L~~GD~I~f 112 (589)
.+||+ +.++...+..+.|++||.|.|
T Consensus 76 VlVN~-----~di~~l~gldt~L~dGDeV~i 101 (114)
T 1wgk_A 76 VLIND-----ADWELLGELDYQLQDQDSILF 101 (114)
T ss_dssp EEESS-----SBHHHHCTTTCBCCSSEEEEE
T ss_pred EEECC-----eeeeccCCcCcCCCCCCEEEE
Confidence 58899 666555578899999999988
Done!