Query 007805
Match_columns 589
No_of_seqs 512 out of 4045
Neff 8.5
Searched_HMMs 46136
Date Thu Mar 28 15:34:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007805.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/007805hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR02441 fa_ox_alpha_mit fatt 100.0 7E-111 1E-115 941.5 63.7 578 1-585 10-617 (737)
2 TIGR02437 FadB fatty oxidation 100.0 3E-110 6E-115 935.1 64.7 579 1-584 1-595 (714)
3 PRK11730 fadB multifunctional 100.0 3E-110 7E-115 937.2 64.5 579 1-584 1-595 (715)
4 TIGR02440 FadJ fatty oxidation 100.0 7E-109 1E-113 924.4 63.9 561 6-585 2-585 (699)
5 PRK11154 fadJ multifunctional 100.0 1E-107 3E-112 916.7 64.7 574 5-584 6-589 (708)
6 COG1250 FadB 3-hydroxyacyl-CoA 100.0 1.6E-64 3.5E-69 502.6 31.4 277 307-583 2-285 (307)
7 KOG2304 3-hydroxyacyl-CoA dehy 100.0 5.9E-64 1.3E-68 458.6 19.6 278 305-582 8-298 (298)
8 PRK07819 3-hydroxybutyryl-CoA 100.0 2.3E-59 4.9E-64 473.1 31.4 276 306-581 3-286 (286)
9 TIGR02279 PaaC-3OHAcCoADH 3-hy 100.0 3.5E-56 7.5E-61 479.7 31.7 279 307-585 4-289 (503)
10 PRK08293 3-hydroxybutyryl-CoA 100.0 1.1E-55 2.5E-60 448.6 31.8 276 307-582 2-287 (287)
11 PRK08268 3-hydroxy-acyl-CoA de 100.0 1.1E-54 2.3E-59 469.8 32.1 279 306-584 5-290 (507)
12 PRK09260 3-hydroxybutyryl-CoA 100.0 1.9E-54 4.1E-59 440.0 31.9 278 308-585 1-284 (288)
13 PRK05808 3-hydroxybutyryl-CoA 100.0 1.4E-54 3.1E-59 439.8 30.8 275 307-581 2-282 (282)
14 PRK06035 3-hydroxyacyl-CoA deh 100.0 3.1E-54 6.7E-59 439.1 32.0 275 307-581 2-290 (291)
15 PLN02545 3-hydroxybutyryl-CoA 100.0 7.7E-54 1.7E-58 437.3 32.1 278 307-584 3-286 (295)
16 PRK07530 3-hydroxybutyryl-CoA 100.0 1.9E-53 4.1E-58 433.8 31.9 279 306-584 2-286 (292)
17 PRK07066 3-hydroxybutyryl-CoA 100.0 1.6E-53 3.5E-58 432.2 25.3 275 306-584 5-299 (321)
18 KOG1680 Enoyl-CoA hydratase [L 100.0 2.1E-52 4.5E-57 396.2 23.6 246 10-295 42-288 (290)
19 PRK08269 3-hydroxybutyryl-CoA 100.0 1.9E-51 4.2E-56 419.2 31.5 265 319-583 1-284 (314)
20 PRK05862 enoyl-CoA hydratase; 100.0 4.5E-51 9.8E-56 407.7 28.8 253 1-294 1-254 (257)
21 PRK07658 enoyl-CoA hydratase; 100.0 4.2E-51 9E-56 408.5 28.0 252 5-294 3-254 (257)
22 PRK05809 3-hydroxybutyryl-CoA 100.0 1.3E-50 2.8E-55 405.4 28.0 255 1-294 1-257 (260)
23 PRK05980 enoyl-CoA hydratase; 100.0 1.1E-50 2.4E-55 405.8 27.4 254 1-293 1-259 (260)
24 PRK09076 enoyl-CoA hydratase; 100.0 1.4E-50 3E-55 404.2 27.8 251 5-294 4-255 (258)
25 PRK08140 enoyl-CoA hydratase; 100.0 1.7E-50 3.7E-55 405.0 28.5 255 1-294 1-259 (262)
26 PRK06142 enoyl-CoA hydratase; 100.0 1.2E-50 2.6E-55 408.1 27.3 256 1-294 2-270 (272)
27 PRK06143 enoyl-CoA hydratase; 100.0 1.7E-50 3.8E-55 402.5 28.1 252 1-291 3-256 (256)
28 PRK08150 enoyl-CoA hydratase; 100.0 2.8E-50 6.1E-55 400.8 28.4 251 4-295 2-253 (255)
29 PRK09674 enoyl-CoA hydratase-i 100.0 4.1E-50 9E-55 400.1 29.1 251 1-294 1-252 (255)
30 PRK05995 enoyl-CoA hydratase; 100.0 5.7E-50 1.2E-54 401.2 29.6 255 1-294 1-259 (262)
31 PRK08139 enoyl-CoA hydratase; 100.0 3.9E-50 8.4E-55 402.2 28.3 255 1-294 8-263 (266)
32 PRK05981 enoyl-CoA hydratase; 100.0 4.2E-50 9.1E-55 403.1 28.1 256 1-294 1-263 (266)
33 PRK06563 enoyl-CoA hydratase; 100.0 4.8E-50 1E-54 399.9 28.1 251 6-294 1-252 (255)
34 PRK05674 gamma-carboxygeranoyl 100.0 5.9E-50 1.3E-54 400.7 28.5 256 1-294 1-261 (265)
35 PRK09245 enoyl-CoA hydratase; 100.0 5.3E-50 1.1E-54 402.3 28.0 255 1-294 1-263 (266)
36 PRK07657 enoyl-CoA hydratase; 100.0 5.7E-50 1.2E-54 400.5 28.1 255 1-294 1-257 (260)
37 PRK06495 enoyl-CoA hydratase; 100.0 6.3E-50 1.4E-54 399.3 27.9 253 1-294 1-254 (257)
38 PRK06494 enoyl-CoA hydratase; 100.0 7.8E-50 1.7E-54 399.0 28.2 252 1-294 1-256 (259)
39 PRK08138 enoyl-CoA hydratase; 100.0 1.2E-49 2.5E-54 398.2 29.0 251 4-294 7-258 (261)
40 PRK07468 enoyl-CoA hydratase; 100.0 9.7E-50 2.1E-54 399.0 28.5 256 1-294 1-259 (262)
41 PRK03580 carnitinyl-CoA dehydr 100.0 1.2E-49 2.6E-54 398.1 28.8 253 1-294 1-258 (261)
42 PRK07799 enoyl-CoA hydratase; 100.0 1.3E-49 2.8E-54 398.6 28.8 253 3-294 4-260 (263)
43 PLN02888 enoyl-CoA hydratase 100.0 2.1E-49 4.5E-54 396.4 30.1 254 3-297 8-264 (265)
44 PRK06210 enoyl-CoA hydratase; 100.0 1.2E-49 2.6E-54 401.1 28.1 256 1-294 2-269 (272)
45 TIGR02280 PaaB1 phenylacetate 100.0 1.2E-49 2.7E-54 397.1 27.7 250 6-294 1-253 (256)
46 PRK08252 enoyl-CoA hydratase; 100.0 1.8E-49 3.9E-54 395.3 28.5 250 1-294 1-251 (254)
47 PRK09120 p-hydroxycinnamoyl Co 100.0 1.6E-49 3.5E-54 399.3 28.4 251 4-292 8-265 (275)
48 PLN02600 enoyl-CoA hydratase 100.0 1.2E-49 2.5E-54 395.7 27.0 245 12-294 2-248 (251)
49 PRK07511 enoyl-CoA hydratase; 100.0 1.9E-49 4.1E-54 396.9 28.7 255 1-294 1-258 (260)
50 PRK08258 enoyl-CoA hydratase; 100.0 1.8E-49 4E-54 400.0 28.6 252 5-294 18-274 (277)
51 PRK06127 enoyl-CoA hydratase; 100.0 1.9E-49 4.2E-54 398.1 28.2 255 3-295 10-267 (269)
52 TIGR01929 menB naphthoate synt 100.0 2.7E-49 5.9E-54 394.8 27.0 253 4-294 2-256 (259)
53 PLN02664 enoyl-CoA hydratase/d 100.0 2E-49 4.3E-54 399.3 26.2 246 12-294 15-272 (275)
54 PRK07938 enoyl-CoA hydratase; 100.0 2.7E-49 5.9E-54 392.3 26.5 247 6-292 3-249 (249)
55 PRK06688 enoyl-CoA hydratase; 100.0 7.1E-49 1.5E-53 393.0 28.6 251 4-294 5-256 (259)
56 TIGR03210 badI 2-ketocyclohexa 100.0 7.2E-49 1.6E-53 391.1 28.2 251 3-294 1-253 (256)
57 PRK07659 enoyl-CoA hydratase; 100.0 4.6E-49 9.9E-54 393.7 26.7 251 4-294 6-257 (260)
58 PRK11423 methylmalonyl-CoA dec 100.0 5.8E-49 1.3E-53 392.7 27.4 253 1-294 1-258 (261)
59 PRK07260 enoyl-CoA hydratase; 100.0 8.9E-49 1.9E-53 390.7 28.2 251 3-291 1-255 (255)
60 PLN03214 probable enoyl-CoA hy 100.0 7.7E-49 1.7E-53 394.4 27.8 257 3-296 10-270 (278)
61 PRK07396 dihydroxynaphthoic ac 100.0 1.6E-48 3.5E-53 392.0 28.5 253 3-295 12-267 (273)
62 PRK08260 enoyl-CoA hydratase; 100.0 1.3E-48 2.8E-53 397.3 27.9 258 1-296 1-277 (296)
63 PRK08259 enoyl-CoA hydratase; 100.0 2E-48 4.4E-53 387.2 28.4 248 1-291 1-249 (254)
64 PRK06144 enoyl-CoA hydratase; 100.0 1.5E-48 3.3E-53 390.1 27.0 250 3-294 7-259 (262)
65 PRK06023 enoyl-CoA hydratase; 100.0 2.6E-48 5.7E-53 386.2 28.4 247 1-289 1-251 (251)
66 PRK07327 enoyl-CoA hydratase; 100.0 2E-48 4.4E-53 390.5 27.7 251 3-294 10-265 (268)
67 PRK06190 enoyl-CoA hydratase; 100.0 5.2E-48 1.1E-52 384.2 29.5 252 1-293 1-256 (258)
68 PRK05864 enoyl-CoA hydratase; 100.0 3.1E-48 6.8E-53 390.8 27.9 254 4-294 9-272 (276)
69 PRK05870 enoyl-CoA hydratase; 100.0 1.9E-48 4.1E-53 386.8 25.8 247 1-289 1-249 (249)
70 TIGR03189 dienoyl_CoA_hyt cycl 100.0 5.2E-48 1.1E-52 383.3 27.8 244 6-294 3-248 (251)
71 PRK12478 enoyl-CoA hydratase; 100.0 9E-48 2E-52 390.2 28.7 253 1-295 2-279 (298)
72 PLN02921 naphthoate synthase 100.0 1E-47 2.2E-52 392.3 29.2 254 3-295 64-321 (327)
73 PRK07509 enoyl-CoA hydratase; 100.0 1.1E-47 2.3E-52 384.9 27.8 251 3-294 2-260 (262)
74 COG1024 CaiD Enoyl-CoA hydrata 100.0 1.4E-47 3.1E-52 382.7 27.2 252 2-293 3-256 (257)
75 PRK06072 enoyl-CoA hydratase; 100.0 3.3E-47 7.1E-52 377.4 27.4 243 6-294 2-245 (248)
76 PRK07112 polyketide biosynthes 100.0 8E-47 1.7E-51 376.2 27.7 250 1-294 1-252 (255)
77 PRK07110 polyketide biosynthes 100.0 1.1E-46 2.3E-51 373.9 28.2 245 1-287 2-247 (249)
78 PRK07854 enoyl-CoA hydratase; 100.0 6.4E-47 1.4E-51 374.0 26.4 238 6-294 2-240 (243)
79 PF00378 ECH: Enoyl-CoA hydrat 100.0 2E-47 4.2E-52 379.7 22.1 244 7-289 1-245 (245)
80 PRK07827 enoyl-CoA hydratase; 100.0 9.1E-47 2E-51 377.4 26.0 250 4-294 6-258 (260)
81 PRK05617 3-hydroxyisobutyryl-C 100.0 6.4E-47 1.4E-51 390.5 23.7 290 4-296 3-325 (342)
82 PRK08321 naphthoate synthase; 100.0 3.6E-46 7.9E-51 379.5 27.9 253 4-294 23-295 (302)
83 PRK06130 3-hydroxybutyryl-CoA 100.0 2.8E-45 6.2E-50 377.3 30.9 273 307-584 3-285 (311)
84 PLN02874 3-hydroxyisobutyryl-C 100.0 5E-46 1.1E-50 388.2 24.9 290 3-296 10-338 (379)
85 TIGR03222 benzo_boxC benzoyl-C 100.0 3E-45 6.6E-50 393.9 24.1 254 3-294 255-541 (546)
86 PRK08184 benzoyl-CoA-dihydrodi 100.0 2.3E-45 5E-50 396.4 23.2 254 3-294 259-545 (550)
87 PLN02157 3-hydroxyisobutyryl-C 100.0 2.1E-44 4.6E-49 374.7 25.2 249 4-293 37-292 (401)
88 KOG1679 Enoyl-CoA hydratase [L 100.0 1.1E-45 2.3E-50 334.5 13.0 246 12-295 38-289 (291)
89 PRK08290 enoyl-CoA hydratase; 100.0 4.3E-44 9.3E-49 361.8 25.2 239 1-279 1-263 (288)
90 PRK05869 enoyl-CoA hydratase; 100.0 3.1E-44 6.7E-49 349.4 22.6 205 3-209 2-210 (222)
91 PLN02988 3-hydroxyisobutyryl-C 100.0 2.8E-42 6E-47 358.1 30.1 291 2-296 7-338 (381)
92 PRK08788 enoyl-CoA hydratase; 100.0 3E-42 6.5E-47 345.8 27.1 247 3-288 14-275 (287)
93 PRK06213 enoyl-CoA hydratase; 100.0 7.9E-43 1.7E-47 342.3 22.3 202 1-209 1-203 (229)
94 PRK08272 enoyl-CoA hydratase; 100.0 4.8E-42 1E-46 350.1 26.0 203 2-209 8-235 (302)
95 PRK06129 3-hydroxyacyl-CoA deh 100.0 2.1E-40 4.6E-45 339.8 29.3 262 308-569 2-274 (308)
96 KOG1681 Enoyl-CoA isomerase [L 100.0 4.3E-42 9.2E-47 314.2 14.8 257 3-296 18-290 (292)
97 PLN02851 3-hydroxyisobutyryl-C 100.0 3.1E-40 6.7E-45 343.2 30.3 289 4-296 42-371 (407)
98 TIGR03200 dearomat_oah 6-oxocy 100.0 3.2E-40 6.9E-45 332.7 25.0 191 15-206 38-244 (360)
99 PLN02267 enoyl-CoA hydratase/i 100.0 6.8E-40 1.5E-44 322.6 21.9 198 6-206 2-205 (239)
100 KOG0016 Enoyl-CoA hydratase/is 100.0 9.5E-39 2.1E-43 300.4 23.3 253 1-290 4-263 (266)
101 COG0447 MenB Dihydroxynaphthoi 100.0 2.9E-39 6.3E-44 293.4 15.3 252 3-294 17-275 (282)
102 PF02737 3HCDH_N: 3-hydroxyacy 100.0 1E-37 2.2E-42 293.4 20.4 180 310-489 1-180 (180)
103 KOG1683 Hydroxyacyl-CoA dehydr 100.0 2.1E-38 4.6E-43 312.8 14.2 261 319-584 1-265 (380)
104 PRK07531 bifunctional 3-hydrox 100.0 5.2E-37 1.1E-41 333.0 26.3 243 308-554 4-254 (495)
105 KOG2305 3-hydroxyacyl-CoA dehy 100.0 1.5E-37 3.2E-42 285.2 15.8 230 307-539 2-242 (313)
106 PRK08184 benzoyl-CoA-dihydrodi 100.0 8.8E-37 1.9E-41 329.8 22.5 204 1-206 12-236 (550)
107 TIGR03222 benzo_boxC benzoyl-C 100.0 8.6E-37 1.9E-41 328.6 21.6 202 3-206 10-232 (546)
108 cd06558 crotonase-like Crotona 100.0 1.8E-36 3.9E-41 290.8 19.6 192 6-199 1-194 (195)
109 KOG1682 Enoyl-CoA isomerase [L 100.0 4.1E-35 9E-40 263.6 17.2 245 12-294 39-284 (287)
110 KOG1684 Enoyl-CoA hydratase [L 100.0 3.6E-31 7.9E-36 258.8 20.1 290 4-296 38-367 (401)
111 PRK08268 3-hydroxy-acyl-CoA de 100.0 9.6E-28 2.1E-32 260.0 18.0 164 413-580 338-504 (507)
112 PF00725 3HCDH: 3-hydroxyacyl- 99.9 1E-23 2.2E-28 178.4 7.7 91 491-581 1-97 (97)
113 TIGR02279 PaaC-3OHAcCoADH 3-hy 99.9 7.7E-23 1.7E-27 221.1 15.8 119 454-572 378-499 (503)
114 cd07014 S49_SppA Signal peptid 99.8 7E-19 1.5E-23 165.7 12.2 145 30-192 21-175 (177)
115 COG2084 MmsB 3-hydroxyisobutyr 99.8 2.1E-18 4.6E-23 170.8 14.8 188 309-526 1-211 (286)
116 cd07020 Clp_protease_NfeD_1 No 99.8 5.2E-18 1.1E-22 160.9 14.2 150 16-191 2-171 (187)
117 TIGR01505 tartro_sem_red 2-hyd 99.7 2.2E-17 4.7E-22 168.4 13.8 187 310-526 1-209 (291)
118 PRK07417 arogenate dehydrogena 99.7 3.1E-16 6.8E-21 158.7 20.6 153 310-487 2-166 (279)
119 PRK11559 garR tartronate semia 99.7 9.8E-17 2.1E-21 164.1 14.8 189 308-526 2-212 (296)
120 PRK11199 tyrA bifunctional cho 99.7 1.5E-15 3.2E-20 159.5 16.6 171 307-518 97-277 (374)
121 PLN02688 pyrroline-5-carboxyla 99.6 6.5E-15 1.4E-19 148.3 18.6 186 309-522 1-201 (266)
122 PRK06545 prephenate dehydrogen 99.6 8.1E-15 1.8E-19 153.5 19.3 207 309-539 1-233 (359)
123 KOG0409 Predicted dehydrogenas 99.6 1.7E-14 3.7E-19 140.1 19.5 194 306-526 33-246 (327)
124 cd07019 S49_SppA_1 Signal pept 99.6 1E-15 2.3E-20 148.0 10.3 159 14-191 1-208 (211)
125 PRK12491 pyrroline-5-carboxyla 99.6 2.7E-14 5.9E-19 143.4 18.8 188 309-522 3-204 (272)
126 PRK11880 pyrroline-5-carboxyla 99.6 3.3E-14 7.1E-19 143.3 19.0 188 308-522 2-202 (267)
127 PRK07679 pyrroline-5-carboxyla 99.6 2.1E-14 4.5E-19 145.5 16.8 190 307-522 2-206 (279)
128 COG0287 TyrA Prephenate dehydr 99.6 2.5E-14 5.3E-19 142.9 16.3 166 308-497 3-181 (279)
129 PRK15461 NADH-dependent gamma- 99.6 3.1E-14 6.8E-19 145.2 17.0 187 309-522 2-206 (296)
130 PF03446 NAD_binding_2: NAD bi 99.6 2.5E-15 5.4E-20 139.6 5.8 152 308-487 1-162 (163)
131 TIGR01692 HIBADH 3-hydroxyisob 99.6 2.9E-14 6.2E-19 145.1 12.9 185 313-526 1-206 (288)
132 PRK08507 prephenate dehydrogen 99.5 2.9E-13 6.3E-18 136.8 19.2 150 310-487 2-167 (275)
133 PRK08655 prephenate dehydrogen 99.5 1.9E-13 4.2E-18 146.2 17.4 153 309-486 1-161 (437)
134 TIGR02441 fa_ox_alpha_mit fatt 99.5 1.8E-14 3.8E-19 163.1 9.7 105 471-579 626-737 (737)
135 PRK07502 cyclohexadienyl dehyd 99.5 3.1E-13 6.7E-18 138.9 16.7 161 307-491 5-183 (307)
136 PLN02350 phosphogluconate dehy 99.5 2.1E-13 4.4E-18 146.4 15.6 193 307-522 5-224 (493)
137 PLN02256 arogenate dehydrogena 99.5 3.3E-13 7.1E-18 137.3 15.9 153 307-486 35-202 (304)
138 PRK15059 tartronate semialdehy 99.5 3.6E-13 7.8E-18 136.9 16.2 186 310-526 2-209 (292)
139 TIGR00872 gnd_rel 6-phosphoglu 99.5 5.5E-13 1.2E-17 136.3 16.6 183 310-522 2-208 (298)
140 COG0345 ProC Pyrroline-5-carbo 99.5 1.3E-12 2.8E-17 128.6 17.5 182 308-522 1-201 (266)
141 PTZ00142 6-phosphogluconate de 99.5 5.2E-13 1.1E-17 143.2 15.9 190 308-522 1-218 (470)
142 cd07022 S49_Sppa_36K_type Sign 99.5 3.8E-13 8.2E-18 130.5 12.7 154 15-191 2-211 (214)
143 PRK06928 pyrroline-5-carboxyla 99.5 1.9E-12 4.2E-17 130.8 17.9 153 308-485 1-160 (277)
144 cd00394 Clp_protease_like Case 99.5 4.1E-13 8.8E-18 124.6 11.6 135 28-183 8-161 (161)
145 PRK11064 wecC UDP-N-acetyl-D-m 99.5 2.3E-12 5E-17 137.3 18.4 197 307-522 2-247 (415)
146 TIGR00705 SppA_67K signal pept 99.5 3.9E-13 8.6E-18 148.2 12.8 175 12-208 307-530 (584)
147 PRK12490 6-phosphogluconate de 99.4 1E-12 2.2E-17 134.4 14.4 184 310-523 2-210 (299)
148 PRK09599 6-phosphogluconate de 99.4 9.9E-13 2.1E-17 134.7 13.9 182 310-523 2-211 (301)
149 cd07023 S49_Sppa_N_C Signal pe 99.4 1.3E-12 2.8E-17 126.4 12.5 155 15-190 2-204 (208)
150 TIGR03026 NDP-sugDHase nucleot 99.4 1.7E-12 3.8E-17 138.7 14.5 203 310-522 2-243 (411)
151 cd07016 S14_ClpP_1 Caseinolyti 99.4 1.1E-12 2.4E-17 121.5 10.2 129 31-183 15-160 (160)
152 PRK08818 prephenate dehydrogen 99.4 3.2E-12 6.8E-17 132.6 14.6 136 309-486 5-153 (370)
153 PRK12557 H(2)-dependent methyl 99.4 1.3E-11 2.8E-16 127.4 17.8 178 319-517 31-231 (342)
154 PRK11154 fadJ multifunctional 99.4 6.3E-13 1.4E-17 150.6 8.4 88 488-579 613-706 (708)
155 PRK00094 gpsA NAD(P)H-dependen 99.4 1.2E-11 2.5E-16 128.4 17.1 199 308-522 1-239 (325)
156 PLN02858 fructose-bisphosphate 99.4 4.2E-12 9.2E-17 151.8 15.4 191 308-526 4-217 (1378)
157 PRK07634 pyrroline-5-carboxyla 99.4 1.4E-11 3E-16 122.5 16.8 188 308-522 4-206 (245)
158 PRK07680 late competence prote 99.4 1.3E-11 2.9E-16 124.6 16.9 151 310-487 2-158 (273)
159 TIGR02440 FadJ fatty oxidation 99.4 7.8E-13 1.7E-17 149.5 8.5 88 488-579 606-699 (699)
160 PRK05479 ketol-acid reductoiso 99.4 1.2E-11 2.7E-16 125.8 16.4 183 309-518 18-224 (330)
161 PRK15057 UDP-glucose 6-dehydro 99.4 1.7E-12 3.8E-17 136.6 10.5 197 310-522 2-232 (388)
162 PLN02712 arogenate dehydrogena 99.4 1.6E-11 3.5E-16 137.3 18.8 153 307-486 368-535 (667)
163 TIGR00873 gnd 6-phosphoglucona 99.4 6.1E-12 1.3E-16 135.0 14.1 189 310-522 1-215 (467)
164 TIGR00706 SppA_dom signal pept 99.4 1E-11 2.2E-16 119.8 14.2 154 15-195 2-204 (207)
165 PRK06476 pyrroline-5-carboxyla 99.4 1.9E-11 4.1E-16 122.5 16.4 179 310-522 2-193 (258)
166 TIGR00465 ilvC ketol-acid redu 99.4 1.1E-11 2.3E-16 126.5 14.5 202 309-541 4-231 (314)
167 PLN02858 fructose-bisphosphate 99.3 4.9E-11 1.1E-15 142.9 21.9 190 307-526 323-537 (1378)
168 PRK14806 bifunctional cyclohex 99.3 3.4E-11 7.4E-16 138.5 17.3 156 307-486 2-175 (735)
169 PRK15182 Vi polysaccharide bio 99.3 3.2E-11 7E-16 128.5 15.7 196 309-522 7-243 (425)
170 PTZ00431 pyrroline carboxylate 99.3 5.3E-11 1.1E-15 119.2 16.0 181 309-522 4-197 (260)
171 KOG1683 Hydroxyacyl-CoA dehydr 99.3 1.2E-12 2.6E-17 130.7 4.0 171 13-186 65-240 (380)
172 COG0677 WecC UDP-N-acetyl-D-ma 99.3 1.8E-10 3.9E-15 116.4 18.7 198 309-522 10-251 (436)
173 COG0240 GpsA Glycerol-3-phosph 99.3 1E-11 2.3E-16 124.4 9.7 170 308-492 1-182 (329)
174 cd05297 GH4_alpha_glucosidase_ 99.3 5.4E-13 1.2E-17 142.4 0.4 160 310-483 2-185 (423)
175 PF02153 PDH: Prephenate dehyd 99.3 4.3E-11 9.2E-16 119.6 13.3 140 323-486 1-156 (258)
176 COG1004 Ugd Predicted UDP-gluc 99.3 7.1E-11 1.5E-15 119.9 14.2 198 309-522 1-241 (414)
177 PRK14618 NAD(P)H-dependent gly 99.3 3.6E-11 7.8E-16 124.8 12.1 196 309-522 5-238 (328)
178 cd07018 S49_SppA_67K_type Sign 99.2 5.4E-11 1.2E-15 116.1 12.0 146 27-192 25-219 (222)
179 TIGR01915 npdG NADPH-dependent 99.2 1.6E-10 3.4E-15 112.8 15.0 163 309-488 1-189 (219)
180 PLN02353 probable UDP-glucose 99.2 3.5E-10 7.6E-15 121.6 19.0 200 308-522 1-251 (473)
181 PRK14619 NAD(P)H-dependent gly 99.2 1.1E-10 2.4E-15 119.9 14.3 167 309-518 5-211 (308)
182 PRK08229 2-dehydropantoate 2-r 99.2 4.2E-10 9.1E-15 117.6 18.0 168 308-492 2-181 (341)
183 PLN02712 arogenate dehydrogena 99.2 2.9E-10 6.2E-15 127.4 17.4 153 307-486 51-218 (667)
184 PRK11730 fadB multifunctional 99.2 4.5E-11 9.8E-16 135.6 9.0 84 491-579 625-714 (715)
185 TIGR02437 FadB fatty oxidation 99.2 5.4E-11 1.2E-15 134.7 8.9 84 491-579 625-714 (714)
186 PF01210 NAD_Gly3P_dh_N: NAD-d 99.2 2.2E-11 4.7E-16 112.4 4.2 105 310-426 1-106 (157)
187 COG2085 Predicted dinucleotide 99.1 5.5E-10 1.2E-14 104.8 12.4 154 308-488 1-180 (211)
188 cd07021 Clp_protease_NfeD_like 99.1 9.9E-10 2.2E-14 102.8 12.8 145 16-190 2-176 (178)
189 PF10727 Rossmann-like: Rossma 99.1 4.6E-10 1E-14 98.5 8.8 115 308-446 10-127 (127)
190 PRK12439 NAD(P)H-dependent gly 99.1 9.5E-10 2.1E-14 114.5 12.6 179 307-498 6-194 (341)
191 PF03721 UDPG_MGDP_dh_N: UDP-g 99.0 5.2E-10 1.1E-14 105.7 8.6 107 309-428 1-124 (185)
192 PF03807 F420_oxidored: NADP o 99.0 2.2E-10 4.8E-15 96.4 5.4 89 310-424 1-95 (96)
193 PRK09287 6-phosphogluconate de 99.0 2.3E-09 4.9E-14 114.8 14.0 180 319-522 1-207 (459)
194 PTZ00082 L-lactate dehydrogena 99.0 4.6E-10 1E-14 115.3 8.4 125 309-445 7-153 (321)
195 cd01339 LDH-like_MDH L-lactate 99.0 4.5E-10 9.9E-15 114.9 7.9 121 311-444 1-139 (300)
196 TIGR01724 hmd_rel H2-forming N 99.0 1.9E-08 4.1E-13 100.2 18.1 152 319-491 31-198 (341)
197 TIGR03376 glycerol3P_DH glycer 99.0 1E-09 2.2E-14 113.3 9.2 170 310-492 1-198 (342)
198 PRK06223 malate dehydrogenase; 99.0 1.3E-09 2.8E-14 112.1 9.2 125 308-444 2-143 (307)
199 PTZ00117 malate dehydrogenase; 99.0 1.3E-09 2.8E-14 112.2 9.0 124 309-445 6-147 (319)
200 PTZ00345 glycerol-3-phosphate 99.0 2.8E-09 6E-14 110.8 10.7 169 309-492 12-207 (365)
201 COG1023 Gnd Predicted 6-phosph 98.9 3.9E-08 8.4E-13 92.8 15.0 184 309-522 1-209 (300)
202 PRK14620 NAD(P)H-dependent gly 98.9 1E-08 2.2E-13 106.4 11.6 174 310-498 2-189 (326)
203 PRK06444 prephenate dehydrogen 98.8 1E-07 2.2E-12 90.6 13.9 112 310-486 2-119 (197)
204 PRK12921 2-dehydropantoate 2-r 98.8 2E-07 4.3E-12 95.8 16.9 166 309-490 1-179 (305)
205 PRK06522 2-dehydropantoate 2-r 98.8 5.9E-08 1.3E-12 99.6 12.3 113 309-436 1-114 (304)
206 COG0362 Gnd 6-phosphogluconate 98.8 2.3E-07 5E-12 93.8 15.5 190 308-525 3-222 (473)
207 TIGR00112 proC pyrroline-5-car 98.8 2.2E-07 4.8E-12 92.2 15.5 166 332-522 10-184 (245)
208 PRK06249 2-dehydropantoate 2-r 98.7 7.2E-07 1.6E-11 92.0 19.8 175 307-497 4-195 (313)
209 PRK12480 D-lactate dehydrogena 98.7 6.2E-08 1.3E-12 100.1 9.1 100 309-436 147-249 (330)
210 TIGR01763 MalateDH_bact malate 98.7 5.7E-08 1.2E-12 99.4 8.6 100 309-421 2-116 (305)
211 cd07015 Clp_protease_NfeD Nodu 98.7 6.9E-07 1.5E-11 82.8 14.8 142 27-190 9-170 (172)
212 cd00650 LDH_MDH_like NAD-depen 98.6 1.5E-07 3.2E-12 94.6 8.1 97 311-421 1-117 (263)
213 PRK10949 protease 4; Provision 98.6 8.4E-07 1.8E-11 98.4 14.5 162 12-195 325-538 (618)
214 COG4007 Predicted dehydrogenas 98.6 1.3E-06 2.8E-11 83.3 13.6 144 320-486 33-193 (340)
215 cd07013 S14_ClpP Caseinolytic 98.5 5.8E-07 1.2E-11 83.1 10.9 132 28-183 9-162 (162)
216 PRK00277 clpP ATP-dependent Cl 98.5 1.2E-06 2.6E-11 83.9 10.9 135 26-186 38-196 (200)
217 TIGR02354 thiF_fam2 thiamine b 98.4 4.9E-07 1.1E-11 86.6 7.6 105 309-421 22-143 (200)
218 PRK13243 glyoxylate reductase; 98.4 1.3E-06 2.9E-11 90.4 11.0 102 309-436 151-255 (333)
219 PF07991 IlvN: Acetohydroxy ac 98.4 5.8E-07 1.3E-11 81.1 6.9 87 309-421 5-93 (165)
220 PRK13403 ketol-acid reductoiso 98.4 7.1E-07 1.5E-11 89.9 7.9 179 309-517 17-221 (335)
221 PF00056 Ldh_1_N: lactate/mala 98.4 2E-06 4.4E-11 77.6 9.5 101 309-423 1-118 (141)
222 PRK15469 ghrA bifunctional gly 98.3 4.3E-06 9.2E-11 85.7 11.9 102 309-436 137-241 (312)
223 PRK07574 formate dehydrogenase 98.3 1.1E-05 2.4E-10 84.6 14.9 138 309-470 193-343 (385)
224 PRK08605 D-lactate dehydrogena 98.3 9.9E-07 2.2E-11 91.4 6.7 93 309-429 147-242 (332)
225 PRK06436 glycerate dehydrogena 98.3 7E-06 1.5E-10 83.7 12.7 135 309-472 123-268 (303)
226 KOG2711 Glycerol-3-phosphate d 98.3 2E-06 4.3E-11 85.7 7.6 176 305-491 18-219 (372)
227 PLN03139 formate dehydrogenase 98.3 1.7E-05 3.6E-10 83.2 14.7 138 309-470 200-350 (386)
228 cd05291 HicDH_like L-2-hydroxy 98.3 2.3E-06 5.1E-11 87.8 8.2 99 309-421 1-115 (306)
229 PRK05708 2-dehydropantoate 2-r 98.2 4.1E-06 8.9E-11 86.0 9.7 115 309-436 3-118 (305)
230 cd01065 NAD_bind_Shikimate_DH 98.2 1.5E-06 3.4E-11 79.7 5.9 117 309-446 20-140 (155)
231 cd07017 S14_ClpP_2 Caseinolyti 98.2 6.3E-06 1.4E-10 77.0 9.9 135 28-183 18-171 (171)
232 KOG3124 Pyrroline-5-carboxylat 98.2 5.6E-06 1.2E-10 79.6 9.6 152 309-484 1-157 (267)
233 KOG2380 Prephenate dehydrogena 98.2 1.9E-05 4.2E-10 78.4 13.4 152 308-486 52-218 (480)
234 COG1893 ApbA Ketopantoate redu 98.2 8.5E-05 1.8E-09 76.0 18.6 217 309-539 1-262 (307)
235 COG0616 SppA Periplasmic serin 98.2 1.6E-05 3.4E-10 81.7 12.6 160 14-196 60-272 (317)
236 PRK15076 alpha-galactosidase; 98.2 6.5E-06 1.4E-10 88.1 10.1 77 308-396 1-84 (431)
237 PRK12553 ATP-dependent Clp pro 98.2 1.3E-05 2.8E-10 77.1 11.1 138 26-186 42-202 (207)
238 cd05293 LDH_1 A subgroup of L- 98.2 5.8E-06 1.3E-10 84.8 9.0 98 309-420 4-117 (312)
239 PRK11778 putative inner membra 98.2 2.7E-05 5.8E-10 79.4 13.5 160 12-194 89-294 (330)
240 TIGR01327 PGDH D-3-phosphoglyc 98.1 1.3E-05 2.9E-10 88.2 11.2 130 309-463 139-279 (525)
241 cd05292 LDH_2 A subgroup of L- 98.1 5.6E-06 1.2E-10 85.0 7.1 96 310-419 2-113 (308)
242 PRK14512 ATP-dependent Clp pro 98.1 3.7E-05 8.1E-10 73.2 11.8 143 27-190 31-193 (197)
243 PLN02602 lactate dehydrogenase 98.1 1E-05 2.2E-10 84.0 8.3 96 309-417 38-149 (350)
244 COG0111 SerA Phosphoglycerate 98.1 3.4E-05 7.4E-10 79.2 12.0 128 309-462 143-283 (324)
245 cd00300 LDH_like L-lactate deh 98.1 8.6E-06 1.9E-10 83.3 7.3 98 311-422 1-114 (300)
246 CHL00028 clpP ATP-dependent Cl 98.0 7.8E-05 1.7E-09 71.1 13.1 136 26-186 37-196 (200)
247 PRK13581 D-3-phosphoglycerate 98.0 2.6E-05 5.6E-10 85.9 11.0 129 309-463 141-280 (526)
248 PF02558 ApbA: Ketopantoate re 98.0 2E-05 4.4E-10 71.9 8.6 113 311-437 1-116 (151)
249 PF02826 2-Hacid_dh_C: D-isome 98.0 3.1E-06 6.8E-11 79.7 3.2 103 309-436 37-142 (178)
250 TIGR02853 spore_dpaA dipicolin 98.0 2.9E-05 6.3E-10 78.7 10.4 89 309-424 152-241 (287)
251 PF00574 CLP_protease: Clp pro 98.0 9.3E-06 2E-10 76.8 6.3 136 28-186 25-181 (182)
252 PLN02928 oxidoreductase family 98.0 3.2E-05 6.9E-10 80.6 10.6 150 309-471 160-322 (347)
253 PRK12319 acetyl-CoA carboxylas 98.0 0.00017 3.6E-09 71.3 15.0 138 26-186 77-214 (256)
254 PRK00066 ldh L-lactate dehydro 98.0 2.1E-05 4.4E-10 80.9 8.3 97 309-420 7-119 (315)
255 TIGR00493 clpP ATP-dependent C 97.9 0.00012 2.6E-09 69.5 12.3 138 27-185 34-190 (191)
256 PRK14194 bifunctional 5,10-met 97.9 2.1E-05 4.5E-10 79.2 6.9 71 309-423 160-231 (301)
257 cd05294 LDH-like_MDH_nadp A la 97.9 3.1E-05 6.6E-10 79.5 8.0 107 309-428 1-126 (309)
258 CHL00198 accA acetyl-CoA carbo 97.9 0.00044 9.5E-09 69.9 16.0 137 26-185 133-269 (322)
259 PF00670 AdoHcyase_NAD: S-aden 97.8 4.6E-05 9.9E-10 69.4 7.1 98 309-434 24-124 (162)
260 PRK08410 2-hydroxyacid dehydro 97.8 0.0001 2.2E-09 75.8 10.4 99 309-436 146-247 (311)
261 TIGR00513 accA acetyl-CoA carb 97.8 0.00066 1.4E-08 68.7 15.7 137 26-185 130-266 (316)
262 PF01972 SDH_sah: Serine dehyd 97.8 0.00051 1.1E-08 67.1 14.2 99 23-145 67-165 (285)
263 PRK15409 bifunctional glyoxyla 97.8 0.00016 3.4E-09 74.6 11.3 102 309-436 146-251 (323)
264 PLN03230 acetyl-coenzyme A car 97.8 0.00086 1.9E-08 69.5 16.4 138 26-186 200-337 (431)
265 COG0039 Mdh Malate/lactate deh 97.8 6.9E-05 1.5E-09 75.8 8.3 102 309-423 1-118 (313)
266 cd05290 LDH_3 A subgroup of L- 97.8 5.9E-05 1.3E-09 77.1 7.9 74 310-395 1-76 (307)
267 PRK14514 ATP-dependent Clp pro 97.8 0.00034 7.4E-09 67.4 12.4 138 26-186 61-219 (221)
268 PRK12551 ATP-dependent Clp pro 97.8 0.00036 7.7E-09 66.3 12.2 138 27-187 33-191 (196)
269 PRK13302 putative L-aspartate 97.7 0.00014 2.9E-09 73.3 9.7 81 306-410 4-88 (271)
270 PRK05724 acetyl-CoA carboxylas 97.7 0.0016 3.5E-08 66.0 16.9 138 26-186 130-267 (319)
271 PRK13304 L-aspartate dehydroge 97.7 0.00014 3E-09 73.1 9.2 85 309-419 2-90 (265)
272 PRK00257 erythronate-4-phospha 97.7 2.8E-05 6E-10 81.6 4.3 98 309-435 117-221 (381)
273 PRK05442 malate dehydrogenase; 97.7 7.5E-05 1.6E-09 76.9 7.3 103 308-424 4-131 (326)
274 PRK06932 glycerate dehydrogena 97.7 0.00022 4.7E-09 73.4 10.7 98 309-436 148-248 (314)
275 PLN03229 acetyl-coenzyme A car 97.7 0.0019 4.1E-08 71.3 18.1 138 26-186 221-358 (762)
276 PRK08306 dipicolinate synthase 97.7 0.00014 2.9E-09 74.3 8.8 90 309-425 153-243 (296)
277 PRK11790 D-3-phosphoglycerate 97.7 5.3E-05 1.2E-09 80.7 6.0 100 309-436 152-254 (409)
278 PF01343 Peptidase_S49: Peptid 97.7 6.4E-05 1.4E-09 69.0 5.5 102 94-196 2-150 (154)
279 cd01075 NAD_bind_Leu_Phe_Val_D 97.7 0.00044 9.6E-09 66.3 11.5 39 309-347 29-67 (200)
280 TIGR01759 MalateDH-SF1 malate 97.7 0.0001 2.2E-09 75.9 7.5 102 309-424 4-130 (323)
281 PRK14513 ATP-dependent Clp pro 97.7 0.00064 1.4E-08 64.7 12.2 137 26-187 34-193 (201)
282 PRK06487 glycerate dehydrogena 97.7 0.00017 3.6E-09 74.3 9.0 97 309-436 149-248 (317)
283 PLN00112 malate dehydrogenase 97.7 0.00032 6.9E-09 74.7 11.2 102 308-423 100-226 (444)
284 PRK05654 acetyl-CoA carboxylas 97.6 0.0032 7E-08 63.5 17.0 162 13-204 120-284 (292)
285 PRK05225 ketol-acid reductoiso 97.6 0.00025 5.5E-09 74.5 9.2 185 309-520 37-251 (487)
286 PRK04148 hypothetical protein; 97.6 0.0013 2.9E-08 58.0 12.3 96 309-425 18-113 (134)
287 PRK15438 erythronate-4-phospha 97.6 6E-05 1.3E-09 78.8 4.2 98 309-435 117-221 (378)
288 TIGR01772 MDH_euk_gproteo mala 97.6 0.00021 4.6E-09 73.1 8.1 98 310-426 1-119 (312)
289 KOG2666 UDP-glucose/GDP-mannos 97.6 0.0005 1.1E-08 67.8 10.2 198 308-522 1-251 (481)
290 PRK06141 ornithine cyclodeamin 97.5 0.00019 4.1E-09 73.9 7.6 92 309-424 126-220 (314)
291 TIGR01757 Malate-DH_plant mala 97.5 0.00057 1.2E-08 71.7 11.1 101 309-423 45-170 (387)
292 PRK14188 bifunctional 5,10-met 97.5 0.00018 3.9E-09 72.6 6.8 72 309-425 159-232 (296)
293 KOG2653 6-phosphogluconate deh 97.5 0.0034 7.3E-08 63.2 15.3 191 308-522 6-223 (487)
294 TIGR00515 accD acetyl-CoA carb 97.5 0.0042 9.2E-08 62.4 16.3 156 17-202 123-281 (285)
295 COG1052 LdhA Lactate dehydroge 97.5 0.0002 4.3E-09 73.6 6.9 102 309-436 147-251 (324)
296 PF02056 Glyco_hydro_4: Family 97.5 0.00068 1.5E-08 63.4 9.6 74 310-395 1-81 (183)
297 cd00401 AdoHcyase S-adenosyl-L 97.5 0.00042 9E-09 73.4 9.2 86 309-423 203-289 (413)
298 cd01337 MDH_glyoxysomal_mitoch 97.5 0.00053 1.2E-08 70.1 9.6 97 309-424 1-118 (310)
299 cd01338 MDH_choloroplast_like 97.4 0.00017 3.7E-09 74.3 5.4 101 309-423 3-128 (322)
300 TIGR03133 malonate_beta malona 97.4 0.013 2.9E-07 58.3 18.6 139 25-187 72-218 (274)
301 cd05213 NAD_bind_Glutamyl_tRNA 97.4 0.00036 7.8E-09 71.8 7.7 92 309-423 179-273 (311)
302 PLN02306 hydroxypyruvate reduc 97.4 0.00032 7E-09 73.9 7.4 117 309-436 166-287 (386)
303 PLN00106 malate dehydrogenase 97.4 0.00019 4.1E-09 73.8 5.2 97 309-424 19-136 (323)
304 PF01488 Shikimate_DH: Shikima 97.4 0.0002 4.3E-09 64.2 4.7 74 308-399 12-87 (135)
305 TIGR00936 ahcY adenosylhomocys 97.4 0.00045 9.8E-09 72.9 8.0 96 309-433 196-295 (406)
306 TIGR02371 ala_DH_arch alanine 97.4 0.00046 9.9E-09 71.4 7.9 94 308-425 128-224 (325)
307 PRK11861 bifunctional prephena 97.4 0.00076 1.7E-08 76.8 10.4 94 391-486 1-109 (673)
308 PRK14179 bifunctional 5,10-met 97.4 0.0004 8.7E-09 69.5 6.9 71 309-424 159-231 (284)
309 cd01487 E1_ThiF_like E1_ThiF_l 97.4 0.00057 1.2E-08 64.0 7.5 95 310-412 1-112 (174)
310 COG0569 TrkA K+ transport syst 97.3 0.0012 2.6E-08 64.5 9.9 95 309-423 1-101 (225)
311 PRK05476 S-adenosyl-L-homocyst 97.3 0.00052 1.1E-08 72.9 7.8 86 309-424 213-300 (425)
312 TIGR01771 L-LDH-NAD L-lactate 97.3 0.00022 4.8E-09 72.7 4.9 97 313-423 1-113 (299)
313 PLN02494 adenosylhomocysteinas 97.3 0.0021 4.6E-08 68.5 12.3 87 309-424 255-342 (477)
314 COG0740 ClpP Protease subunit 97.3 0.0031 6.7E-08 59.3 11.8 136 28-188 36-194 (200)
315 PTZ00325 malate dehydrogenase; 97.3 0.00075 1.6E-08 69.3 8.5 35 306-340 6-43 (321)
316 TIGR00705 SppA_67K signal pept 97.3 0.0044 9.5E-08 69.1 15.1 104 12-133 41-160 (584)
317 cd05298 GH4_GlvA_pagL_like Gly 97.3 0.0017 3.6E-08 69.7 11.3 75 309-395 1-82 (437)
318 KOG0069 Glyoxylate/hydroxypyru 97.3 0.0014 3E-08 66.9 9.7 105 306-435 160-267 (336)
319 COG1748 LYS9 Saccharopine dehy 97.3 0.00047 1E-08 71.9 6.3 77 308-400 1-81 (389)
320 cd05197 GH4_glycoside_hydrolas 97.3 0.0019 4.1E-08 69.1 11.0 75 309-395 1-82 (425)
321 KOG1495 Lactate dehydrogenase 97.2 0.0014 3.1E-08 63.6 8.7 104 307-424 19-138 (332)
322 PRK12552 ATP-dependent Clp pro 97.2 0.0071 1.5E-07 58.3 13.5 143 27-186 48-214 (222)
323 PTZ00075 Adenosylhomocysteinas 97.2 0.00069 1.5E-08 72.4 7.1 87 309-425 255-343 (476)
324 TIGR03134 malonate_gamma malon 97.2 0.027 5.9E-07 55.1 17.6 157 27-201 44-204 (238)
325 COG0059 IlvC Ketol-acid reduct 97.2 0.0054 1.2E-07 60.8 12.6 182 308-517 18-224 (338)
326 TIGR01758 MDH_euk_cyt malate d 97.2 0.0011 2.4E-08 68.3 8.2 100 310-423 1-125 (324)
327 TIGR00745 apbA_panE 2-dehydrop 97.2 0.0019 4E-08 65.8 9.8 155 319-489 2-168 (293)
328 CHL00174 accD acetyl-CoA carbo 97.2 0.024 5.3E-07 56.8 17.2 145 25-198 146-291 (296)
329 PRK08618 ornithine cyclodeamin 97.2 0.0012 2.5E-08 68.5 8.1 93 309-425 128-223 (325)
330 PRK10949 protease 4; Provision 97.2 0.0045 9.8E-08 69.1 13.1 84 32-133 96-179 (618)
331 PRK08644 thiamine biosynthesis 97.1 0.001 2.2E-08 64.3 7.0 104 309-420 29-149 (212)
332 cd00704 MDH Malate dehydrogena 97.1 0.00047 1E-08 71.0 4.9 100 310-423 2-126 (323)
333 smart00859 Semialdhyde_dh Semi 97.1 0.0027 5.9E-08 55.6 8.7 100 310-428 1-104 (122)
334 cd05296 GH4_P_beta_glucosidase 97.1 0.0029 6.3E-08 67.6 10.4 75 309-395 1-83 (419)
335 COG1712 Predicted dinucleotide 97.1 0.0022 4.8E-08 60.8 8.2 88 310-423 2-93 (255)
336 PRK07340 ornithine cyclodeamin 97.0 0.0017 3.7E-08 66.5 7.9 91 309-425 126-219 (304)
337 cd01080 NAD_bind_m-THF_DH_Cycl 97.0 0.0023 5E-08 59.4 7.9 76 309-428 45-121 (168)
338 TIGR02992 ectoine_eutC ectoine 97.0 0.0017 3.7E-08 67.3 7.7 92 309-423 130-224 (326)
339 cd01336 MDH_cytoplasmic_cytoso 97.0 0.0015 3.3E-08 67.4 7.0 103 309-424 3-129 (325)
340 TIGR01035 hemA glutamyl-tRNA r 97.0 0.0012 2.6E-08 70.8 6.2 94 309-423 181-277 (417)
341 PRK00045 hemA glutamyl-tRNA re 97.0 0.0016 3.5E-08 70.0 7.0 94 309-423 183-280 (423)
342 TIGR01921 DAP-DH diaminopimela 96.9 0.0064 1.4E-07 62.2 10.7 66 309-400 4-73 (324)
343 PRK12549 shikimate 5-dehydroge 96.9 0.0015 3.4E-08 66.1 6.2 72 309-396 128-201 (284)
344 PRK07189 malonate decarboxylas 96.9 0.082 1.8E-06 53.4 18.3 96 25-133 81-182 (301)
345 COG1030 NfeD Membrane-bound se 96.9 0.017 3.6E-07 60.5 13.7 147 12-185 25-187 (436)
346 PRK08291 ectoine utilization p 96.9 0.0027 5.9E-08 65.9 7.8 74 309-399 133-209 (330)
347 PRK13301 putative L-aspartate 96.9 0.004 8.7E-08 61.4 8.2 86 309-422 3-94 (267)
348 TIGR00507 aroE shikimate 5-deh 96.8 0.0025 5.4E-08 64.3 7.0 41 309-349 118-158 (270)
349 PF01118 Semialdhyde_dh: Semia 96.8 0.0015 3.3E-08 57.2 4.6 99 310-429 1-103 (121)
350 COG2423 Predicted ornithine cy 96.8 0.004 8.7E-08 63.9 7.9 94 308-424 130-226 (330)
351 PRK14175 bifunctional 5,10-met 96.8 0.0033 7.1E-08 63.2 7.0 73 309-425 159-232 (286)
352 PRK06046 alanine dehydrogenase 96.8 0.0038 8.1E-08 64.7 7.7 93 309-425 130-225 (326)
353 COG2910 Putative NADH-flavin r 96.8 0.0035 7.5E-08 57.7 6.4 38 309-346 1-39 (211)
354 PF01113 DapB_N: Dihydrodipico 96.8 0.0067 1.5E-07 53.4 8.2 102 309-431 1-106 (124)
355 cd01078 NAD_bind_H4MPT_DH NADP 96.8 0.0034 7.4E-08 59.9 6.8 41 309-349 29-70 (194)
356 PRK06407 ornithine cyclodeamin 96.7 0.0039 8.5E-08 63.7 7.6 95 308-425 117-214 (301)
357 TIGR01117 mmdA methylmalonyl-C 96.7 0.051 1.1E-06 59.6 16.5 165 18-202 319-497 (512)
358 PLN00203 glutamyl-tRNA reducta 96.7 0.0032 6.9E-08 68.9 7.1 85 308-410 266-353 (519)
359 PF01408 GFO_IDH_MocA: Oxidore 96.7 0.0099 2.1E-07 51.7 9.1 77 310-411 2-84 (120)
360 COG4091 Predicted homoserine d 96.7 0.039 8.5E-07 55.8 14.0 157 309-487 18-184 (438)
361 PRK05086 malate dehydrogenase; 96.7 0.0047 1E-07 63.5 7.7 95 309-421 1-116 (312)
362 PRK00048 dihydrodipicolinate r 96.7 0.0039 8.4E-08 62.3 6.7 94 309-431 2-99 (257)
363 TIGR00518 alaDH alanine dehydr 96.7 0.0042 9E-08 65.5 7.2 98 308-423 167-267 (370)
364 PRK00258 aroE shikimate 5-dehy 96.7 0.0044 9.5E-08 62.8 7.1 72 309-399 124-197 (278)
365 PLN02819 lysine-ketoglutarate 96.6 0.014 3.1E-07 68.4 11.9 121 260-399 516-660 (1042)
366 PRK06718 precorrin-2 dehydroge 96.6 0.025 5.3E-07 54.3 11.7 126 309-478 11-142 (202)
367 COG1486 CelF Alpha-galactosida 96.6 0.016 3.5E-07 61.1 11.1 76 308-395 3-85 (442)
368 TIGR01470 cysG_Nterm siroheme 96.6 0.012 2.6E-07 56.6 9.2 131 309-479 10-143 (205)
369 PRK09310 aroDE bifunctional 3- 96.6 0.004 8.6E-08 67.9 6.6 70 309-399 333-402 (477)
370 PRK06823 ornithine cyclodeamin 96.5 0.0077 1.7E-07 61.9 8.1 94 308-425 128-224 (315)
371 PF03059 NAS: Nicotianamine sy 96.4 0.013 2.9E-07 58.4 8.4 99 308-421 121-228 (276)
372 PF13460 NAD_binding_10: NADH( 96.4 0.0052 1.1E-07 57.7 5.3 36 311-346 1-37 (183)
373 PRK07589 ornithine cyclodeamin 96.4 0.014 3E-07 60.7 8.8 93 308-425 129-227 (346)
374 PF02423 OCD_Mu_crystall: Orni 96.4 0.0035 7.6E-08 64.5 4.4 93 309-425 129-226 (313)
375 COG1064 AdhP Zn-dependent alco 96.4 0.11 2.5E-06 53.3 15.1 41 309-349 168-208 (339)
376 COG0373 HemA Glutamyl-tRNA red 96.3 0.0095 2.1E-07 62.7 7.4 41 309-349 179-220 (414)
377 TIGR01809 Shik-DH-AROM shikima 96.3 0.008 1.7E-07 60.9 6.7 41 309-349 126-167 (282)
378 PRK14189 bifunctional 5,10-met 96.3 0.0079 1.7E-07 60.3 6.1 71 309-424 159-231 (285)
379 PRK06199 ornithine cyclodeamin 96.2 0.013 2.8E-07 61.8 7.8 97 308-421 155-257 (379)
380 PRK00961 H(2)-dependent methyl 96.2 0.11 2.3E-06 51.0 13.1 116 376-494 129-250 (342)
381 PF02254 TrkA_N: TrkA-N domain 96.2 0.032 6.9E-07 48.1 8.9 94 311-421 1-95 (116)
382 TIGR02356 adenyl_thiF thiazole 96.2 0.015 3.1E-07 56.0 7.3 32 309-340 22-54 (202)
383 PRK13303 L-aspartate dehydroge 96.1 0.011 2.3E-07 59.4 6.5 68 309-398 2-72 (265)
384 KOG0068 D-3-phosphoglycerate d 96.1 0.055 1.2E-06 54.5 11.0 91 309-425 147-238 (406)
385 PRK09496 trkA potassium transp 96.1 0.012 2.7E-07 63.8 7.3 39 309-347 1-39 (453)
386 PRK00683 murD UDP-N-acetylmura 96.1 0.029 6.2E-07 60.4 9.9 37 308-344 3-39 (418)
387 TIGR01723 hmd_TIGR 5,10-methen 96.1 0.22 4.8E-06 49.0 14.4 113 376-491 127-245 (340)
388 PRK12475 thiamine/molybdopteri 96.0 0.018 3.9E-07 59.8 7.6 33 309-341 25-58 (338)
389 cd05191 NAD_bind_amino_acid_DH 96.0 0.027 6E-07 45.9 7.0 32 308-339 23-55 (86)
390 COG0686 Ald Alanine dehydrogen 96.0 0.018 3.9E-07 57.4 6.7 98 308-423 168-268 (371)
391 PRK13940 glutamyl-tRNA reducta 95.9 0.011 2.3E-07 63.2 5.6 69 309-397 182-252 (414)
392 PRK04207 glyceraldehyde-3-phos 95.9 0.026 5.7E-07 58.7 8.3 106 309-425 2-111 (341)
393 PRK14192 bifunctional 5,10-met 95.9 0.023 4.9E-07 57.4 7.6 71 309-423 160-231 (283)
394 PRK06719 precorrin-2 dehydroge 95.9 0.055 1.2E-06 49.7 9.3 32 309-340 14-45 (157)
395 PRK09424 pntA NAD(P) transhydr 95.9 0.036 7.8E-07 60.5 9.3 42 308-349 165-206 (509)
396 PF03435 Saccharop_dh: Sacchar 95.9 0.0088 1.9E-07 63.6 4.6 72 311-397 1-77 (386)
397 PRK09496 trkA potassium transp 95.8 0.054 1.2E-06 58.9 10.7 96 308-420 231-328 (453)
398 PF01039 Carboxyl_trans: Carbo 95.8 0.12 2.6E-06 56.7 13.3 145 18-198 61-218 (493)
399 PRK03659 glutathione-regulated 95.8 0.047 1E-06 61.5 10.2 97 309-423 401-499 (601)
400 COG0825 AccA Acetyl-CoA carbox 95.7 0.022 4.7E-07 56.1 6.3 84 93-186 183-266 (317)
401 TIGR00036 dapB dihydrodipicoli 95.7 0.021 4.6E-07 57.3 6.4 101 309-431 2-107 (266)
402 TIGR00561 pntA NAD(P) transhyd 95.7 0.035 7.7E-07 60.3 8.2 109 309-424 165-285 (511)
403 cd05311 NAD_bind_2_malic_enz N 95.7 0.064 1.4E-06 52.4 9.4 32 309-340 26-60 (226)
404 PRK10669 putative cation:proto 95.7 0.03 6.5E-07 62.6 8.0 95 309-421 418-514 (558)
405 cd05212 NAD_bind_m-THF_DH_Cycl 95.6 0.04 8.7E-07 49.4 7.2 73 309-425 29-102 (140)
406 TIGR01117 mmdA methylmalonyl-C 95.6 0.38 8.3E-06 52.8 16.0 141 25-201 95-244 (512)
407 PRK07688 thiamine/molybdopteri 95.6 0.025 5.5E-07 58.8 6.5 33 309-341 25-58 (339)
408 PF13380 CoA_binding_2: CoA bi 95.5 0.038 8.2E-07 48.0 6.4 80 309-420 1-85 (116)
409 PRK08300 acetaldehyde dehydrog 95.5 0.068 1.5E-06 54.2 9.0 149 309-486 5-195 (302)
410 cd01079 NAD_bind_m-THF_DH NAD 95.5 0.055 1.2E-06 50.9 7.6 88 309-426 63-159 (197)
411 PF02882 THF_DHG_CYH_C: Tetrah 95.4 0.033 7.1E-07 51.1 6.0 73 309-425 37-110 (160)
412 KOG0022 Alcohol dehydrogenase, 95.4 0.24 5.2E-06 49.7 12.3 41 309-349 194-235 (375)
413 PRK00436 argC N-acetyl-gamma-g 95.4 0.043 9.3E-07 57.3 7.7 100 308-429 2-105 (343)
414 COG0169 AroE Shikimate 5-dehyd 95.3 0.043 9.3E-07 55.3 6.9 42 309-350 127-169 (283)
415 PLN02820 3-methylcrotonyl-CoA 95.3 0.54 1.2E-05 52.1 16.0 151 18-200 133-294 (569)
416 PRK02318 mannitol-1-phosphate 95.3 0.018 3.8E-07 61.1 4.4 39 309-347 1-40 (381)
417 PF00070 Pyr_redox: Pyridine n 95.3 0.026 5.7E-07 45.3 4.4 35 310-344 1-35 (80)
418 PF13241 NAD_binding_7: Putati 95.3 0.039 8.5E-07 46.7 5.6 72 309-409 8-81 (103)
419 PRK10792 bifunctional 5,10-met 95.3 0.04 8.7E-07 55.3 6.4 71 309-423 160-231 (285)
420 PRK01438 murD UDP-N-acetylmura 95.2 0.061 1.3E-06 59.0 8.4 48 294-342 3-50 (480)
421 PLN03075 nicotianamine synthas 95.2 0.16 3.5E-06 51.3 10.7 128 308-450 124-265 (296)
422 PRK14191 bifunctional 5,10-met 95.2 0.056 1.2E-06 54.3 7.1 72 309-424 158-230 (285)
423 COG1648 CysG Siroheme synthase 95.2 0.44 9.6E-06 45.9 13.1 130 309-478 13-145 (210)
424 cd01484 E1-2_like Ubiquitin ac 95.1 0.086 1.9E-06 51.7 8.2 160 310-477 1-177 (234)
425 PRK12409 D-amino acid dehydrog 95.1 0.018 3.8E-07 61.7 3.7 34 308-341 1-34 (410)
426 PRK03562 glutathione-regulated 95.1 0.12 2.5E-06 58.5 10.2 95 308-420 400-496 (621)
427 cd01483 E1_enzyme_family Super 95.0 0.05 1.1E-06 49.0 5.7 32 310-341 1-33 (143)
428 PRK05562 precorrin-2 dehydroge 94.9 0.18 3.9E-06 48.9 9.7 127 309-478 26-158 (223)
429 COG1063 Tdh Threonine dehydrog 94.9 0.098 2.1E-06 54.8 8.5 40 310-349 171-211 (350)
430 PRK06153 hypothetical protein; 94.8 0.052 1.1E-06 56.6 5.9 32 309-340 177-209 (393)
431 TIGR03215 ac_ald_DH_ac acetald 94.8 0.085 1.8E-06 53.2 7.4 89 310-424 3-96 (285)
432 PF12847 Methyltransf_18: Meth 94.8 0.1 2.3E-06 44.4 7.0 95 309-421 3-109 (112)
433 PRK12548 shikimate 5-dehydroge 94.8 0.038 8.3E-07 56.2 4.9 34 309-342 127-161 (289)
434 PRK14027 quinate/shikimate deh 94.7 0.056 1.2E-06 54.7 6.0 41 309-349 128-169 (283)
435 PRK14177 bifunctional 5,10-met 94.7 0.056 1.2E-06 54.2 5.9 73 309-425 160-233 (284)
436 PRK14178 bifunctional 5,10-met 94.7 0.1 2.2E-06 52.3 7.6 73 309-425 153-226 (279)
437 PRK06349 homoserine dehydrogen 94.5 0.077 1.7E-06 57.1 6.7 35 309-343 4-49 (426)
438 PLN02968 Probable N-acetyl-gam 94.4 0.077 1.7E-06 56.0 6.4 100 307-429 37-140 (381)
439 COG0499 SAM1 S-adenosylhomocys 94.4 0.12 2.6E-06 52.7 7.3 87 309-424 210-296 (420)
440 PRK14190 bifunctional 5,10-met 94.4 0.13 2.8E-06 51.7 7.6 72 309-424 159-231 (284)
441 PRK14106 murD UDP-N-acetylmura 94.4 0.34 7.4E-06 52.6 11.6 33 309-341 6-38 (450)
442 COG0190 FolD 5,10-methylene-te 94.4 0.077 1.7E-06 52.7 5.7 93 277-425 137-230 (283)
443 cd00757 ThiF_MoeB_HesA_family 94.4 0.13 2.9E-06 50.3 7.5 33 309-341 22-55 (228)
444 TIGR01850 argC N-acetyl-gamma- 94.3 0.1 2.2E-06 54.5 7.0 100 309-429 1-105 (346)
445 PRK14180 bifunctional 5,10-met 94.3 0.081 1.8E-06 53.0 5.8 72 309-424 159-231 (282)
446 PRK14176 bifunctional 5,10-met 94.3 0.12 2.6E-06 51.9 7.1 73 309-425 165-238 (287)
447 cd05211 NAD_bind_Glu_Leu_Phe_V 94.2 0.11 2.5E-06 50.3 6.6 33 309-341 24-57 (217)
448 COG0673 MviM Predicted dehydro 94.2 0.16 3.5E-06 52.7 8.2 73 307-401 2-81 (342)
449 PRK14173 bifunctional 5,10-met 94.2 0.089 1.9E-06 52.9 5.8 73 309-425 156-229 (287)
450 PRK08762 molybdopterin biosynt 94.1 0.2 4.4E-06 53.0 8.8 32 309-340 136-168 (376)
451 PRK05597 molybdopterin biosynt 94.1 0.11 2.3E-06 54.6 6.5 33 309-341 29-62 (355)
452 COG0777 AccD Acetyl-CoA carbox 94.1 0.83 1.8E-05 44.9 11.9 160 15-204 124-285 (294)
453 COG1062 AdhC Zn-dependent alco 94.0 0.93 2E-05 46.3 12.5 41 309-349 187-228 (366)
454 PRK06270 homoserine dehydrogen 94.0 0.14 3.1E-06 53.3 7.2 22 309-330 3-24 (341)
455 PRK08374 homoserine dehydrogen 94.0 0.26 5.7E-06 51.2 9.1 21 309-329 3-23 (336)
456 PRK05600 thiamine biosynthesis 93.9 0.12 2.5E-06 54.5 6.4 32 309-340 42-74 (370)
457 cd01076 NAD_bind_1_Glu_DH NAD( 93.9 0.17 3.8E-06 49.4 7.1 32 308-339 31-63 (227)
458 COG0136 Asd Aspartate-semialde 93.9 0.31 6.7E-06 49.8 9.0 146 309-485 2-155 (334)
459 PRK12828 short chain dehydroge 93.8 0.14 2.9E-06 50.0 6.5 39 309-347 8-47 (239)
460 PRK12829 short chain dehydroge 93.8 0.36 7.7E-06 47.9 9.6 39 309-347 12-51 (264)
461 PRK14186 bifunctional 5,10-met 93.8 0.16 3.5E-06 51.4 6.9 73 309-425 159-232 (297)
462 PRK15116 sulfur acceptor prote 93.8 0.15 3.3E-06 50.9 6.7 33 309-341 31-64 (268)
463 cd00755 YgdL_like Family of ac 93.7 0.25 5.3E-06 48.4 7.9 33 309-341 12-45 (231)
464 PRK14172 bifunctional 5,10-met 93.7 0.16 3.4E-06 50.9 6.6 71 309-423 159-230 (278)
465 PRK14183 bifunctional 5,10-met 93.7 0.17 3.6E-06 50.7 6.8 72 309-424 158-230 (281)
466 PLN02516 methylenetetrahydrofo 93.7 0.18 3.9E-06 51.0 7.1 72 309-424 168-240 (299)
467 PRK14874 aspartate-semialdehyd 93.7 0.12 2.5E-06 53.9 5.9 143 309-486 2-152 (334)
468 PRK12749 quinate/shikimate deh 93.7 0.15 3.3E-06 51.7 6.6 34 309-342 125-159 (288)
469 PRK14170 bifunctional 5,10-met 93.6 0.2 4.3E-06 50.3 7.1 73 309-425 158-231 (284)
470 PRK13255 thiopurine S-methyltr 93.6 0.65 1.4E-05 45.1 10.6 100 309-418 39-150 (218)
471 COG0300 DltE Short-chain dehyd 93.6 0.17 3.7E-06 50.3 6.6 48 306-353 4-52 (265)
472 PLN00016 RNA-binding protein; 93.6 0.15 3.2E-06 54.0 6.7 37 307-343 51-92 (378)
473 PRK12550 shikimate 5-dehydroge 93.6 0.13 2.7E-06 51.8 5.7 39 309-347 123-162 (272)
474 COG2344 AT-rich DNA-binding pr 93.6 0.18 3.8E-06 46.8 6.0 39 307-345 83-124 (211)
475 PRK14169 bifunctional 5,10-met 93.5 0.18 3.9E-06 50.6 6.7 72 309-424 157-229 (282)
476 cd01486 Apg7 Apg7 is an E1-lik 93.5 0.032 6.9E-07 56.3 1.2 31 310-340 1-32 (307)
477 PRK05868 hypothetical protein; 93.5 0.057 1.2E-06 57.1 3.2 36 308-343 1-36 (372)
478 CHL00194 ycf39 Ycf39; Provisio 93.5 0.12 2.5E-06 53.4 5.5 35 310-344 2-37 (317)
479 PRK14166 bifunctional 5,10-met 93.5 0.19 4.1E-06 50.4 6.6 71 309-423 158-229 (282)
480 TIGR03840 TMPT_Se_Te thiopurin 93.4 0.82 1.8E-05 44.2 10.9 103 309-418 36-147 (213)
481 PRK00711 D-amino acid dehydrog 93.4 0.068 1.5E-06 57.3 3.8 33 310-342 2-34 (416)
482 PF01039 Carboxyl_trans: Carbo 93.4 0.48 1E-05 52.0 10.4 166 18-203 298-481 (493)
483 PRK07877 hypothetical protein; 93.4 0.15 3.2E-06 58.1 6.4 32 309-341 108-141 (722)
484 PRK05690 molybdopterin biosynt 93.3 0.18 3.9E-06 50.0 6.3 33 309-341 33-66 (245)
485 PRK14171 bifunctional 5,10-met 93.3 0.22 4.7E-06 50.1 6.8 71 309-423 160-231 (288)
486 TIGR03736 PRTRC_ThiF PRTRC sys 93.3 0.22 4.7E-06 49.1 6.7 98 309-411 12-129 (244)
487 PRK00141 murD UDP-N-acetylmura 93.3 0.13 2.9E-06 56.2 5.7 39 305-343 12-50 (473)
488 PRK07236 hypothetical protein; 93.2 0.087 1.9E-06 56.0 4.1 37 306-342 4-40 (386)
489 TIGR02355 moeB molybdopterin s 93.2 0.17 3.6E-06 50.0 5.7 34 309-342 25-59 (240)
490 TIGR01381 E1_like_apg7 E1-like 93.1 0.055 1.2E-06 59.9 2.5 32 309-340 339-371 (664)
491 PRK14174 bifunctional 5,10-met 93.1 0.27 5.8E-06 49.8 7.2 72 309-424 160-236 (295)
492 KOG1502 Flavonol reductase/cin 93.1 0.18 4E-06 51.4 6.0 40 307-346 5-45 (327)
493 PF13450 NAD_binding_8: NAD(P) 93.1 0.081 1.8E-06 41.1 2.8 30 313-342 1-30 (68)
494 PLN02820 3-methylcrotonyl-CoA 93.1 1.6 3.5E-05 48.4 13.8 157 26-202 380-556 (569)
495 PRK14182 bifunctional 5,10-met 93.0 0.26 5.6E-06 49.4 6.9 72 309-424 158-230 (282)
496 PRK05854 short chain dehydroge 93.0 1.3 2.9E-05 45.4 12.6 45 307-351 13-58 (313)
497 PRK05653 fabG 3-ketoacyl-(acyl 93.0 1.3 2.8E-05 43.1 12.0 40 308-347 5-45 (246)
498 cd01490 Ube1_repeat2 Ubiquitin 93.0 0.37 7.9E-06 51.5 8.3 163 310-479 1-186 (435)
499 PF13766 ECH_C: 2-enoyl-CoA Hy 92.9 0.25 5.4E-06 43.0 5.8 52 245-296 49-102 (118)
500 PRK14193 bifunctional 5,10-met 92.9 0.27 5.8E-06 49.4 6.8 72 309-424 159-233 (284)
No 1
>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial. Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).
Probab=100.00 E-value=6.7e-111 Score=941.52 Aligned_cols=578 Identities=35% Similarity=0.542 Sum_probs=517.1
Q ss_pred CCCCcEEEEEecCcEEEEEeCCCC--CCCCCHHHHHHHHHHHHHHhcCCCceEE-EEEcCCCCCcCCCCchhhhhccCCC
Q 007805 1 MAAPRVTMEVGNDGVAIITLINPP--VNALAIPIVAGLKDKFEEATSRDDVKAI-VLTGNGGRFSGGFDINVFQKVHGAG 77 (589)
Q Consensus 1 M~~~~~~~~~~~~~v~~i~l~~p~--~N~l~~~~~~~l~~~l~~~~~~~~v~~v-vl~g~g~~F~aG~Dl~~~~~~~~~~ 77 (589)
|+++++.+++ +++|++|+||||+ .|++|.+|+.+|.+++++++.|+++|++ |+||.|++||+|+|++++.......
T Consensus 10 ~~~~~~~~~~-~~gVa~itlnrP~~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVvltg~g~~F~aG~Dl~~~~~~~~~~ 88 (737)
T TIGR02441 10 MARTHRHYEV-KGDVAVVKIDSPNSKVNTLSKELFAEFKEVMNELWTNEAIKSAVLISGKPGSFVAGADIQMIAACKTAQ 88 (737)
T ss_pred CCCCeEEEEE-ECCEEEEEEcCCCCCCCCCCHHHHHHHHHHHHHHhhCCCCEEEEEEECCCCcceeCcCHHHHhccCChH
Confidence 6778899998 8899999999996 6999999999999999999999999975 5699999999999999986421111
Q ss_pred cccccchhHHHHHHHHHHhCCCcEEEEeCCcccchhhHHhhhcCEEEEeCC--ceEeccccccCCCCChhhhhhHhhhcC
Q 007805 78 DVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPK--TQLGLPELTLGVIPGFGGTQRLPRLVG 155 (589)
Q Consensus 78 ~~~~~~~~~~~~~~~~l~~~~kp~iaav~G~a~GgG~~lala~D~~ia~~~--a~~~~pe~~~Gl~p~~g~~~~l~~~~G 155 (589)
....+....++++ .++.++||||||+|||+|+|||++|+|+||||||+++ ++|++||+++|++|++|++++|||++|
T Consensus 89 ~~~~~~~~~~~l~-~~i~~~~kPvIAav~G~a~GgG~eLALacD~ria~~~a~a~fglpEv~lGl~Pg~Ggt~rLprliG 167 (737)
T TIGR02441 89 EVTQLSQEGQEMF-ERIEKSQKPIVAAISGSCLGGGLELALACHYRIATKDRKTLLGLPEVMLGLLPGAGGTQRLPKLTG 167 (737)
T ss_pred HHHHHHHHHHHHH-HHHHhCCCCEEEEECCEeecHHHHHHHhCCEEEEcCCCCCeEecchhhhCCCCCccHhhhHHHhhC
Confidence 1122223344566 6799999999999999999999999999999999987 589999999999999999999999999
Q ss_pred HHHHHHHHHcCCCCCHHHHHHcCCcceecCc-------------hHHHHHHHHHHHHHHhcChhhhhhhhc-cCCCCCh-
Q 007805 156 LSKAIEMMLLSKSITSEEGWKLGLIDAVVTS-------------EELLKVSRLWALDIAARRKPWIRSLHR-TDKLGSL- 220 (589)
Q Consensus 156 ~~~a~~l~ltg~~~~a~~A~~~Glv~~vv~~-------------~~l~~~a~~~a~~la~~~~~~~~~~~~-~~~~~~~- 220 (589)
..+|++|++||++++|+||+++||||+|||+ +++.+.|.+++++++..+... +.... ..+...+
T Consensus 168 ~~~A~~l~ltG~~i~a~eA~~~GLVd~vv~~~~~~~~~l~~~~~~~l~~~A~~~a~~l~~~~~~~-~~~~~~~~~~~~~~ 246 (737)
T TIGR02441 168 VPAALDMMLTGKKIRADRAKKMGIVDQLVDPLGPGLKPAEENTIEYLEEVAVKFAQGLANGKLSI-NRDKGLVHKITQYV 246 (737)
T ss_pred HHHHHHHHHcCCcCCHHHHHHCCCCeEecCCcccccccchhhhHHHHHHHHHHHHHHhhcccCCc-cccccccCccchhh
Confidence 9999999999999999999999999999987 567888888888876543221 11110 0011000
Q ss_pred ----HHHHHHHHHHHHH-HHHhCCCChhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHhHHHHHHHhhhccCC
Q 007805 221 ----SEAREVLKLARLQ-AKKTAPNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKV 295 (589)
Q Consensus 221 ----~~~~~~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~af~~~r~~~~~ 295 (589)
......+..++.+ .+++++|||||.+++++++.+...+++++++.|++.|.+++.|++++++++.|+.+|..++.
T Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~g~~~Ap~~~l~~v~~~~~~~~~~gl~~E~~~f~~l~~s~~a~al~~~f~~~~~~~~~ 326 (737)
T TIGR02441 247 MTNPFVRQQVYKTAEDKVMKQTKGLYPAPLKILDVVRTGYDQGPDAGYEAESKAFGELSMTFESKALIGLFHGQTDCKKN 326 (737)
T ss_pred cccchhHHHHHHHHHHHHHHhccCCCccHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHccCC
Confidence 1122334444444 45788899999999999999999999999999999999999999999999999999999876
Q ss_pred CCCCCCCCCCCccceEEEEcCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhc
Q 007805 296 PNVTDIGLKPRGVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKM 375 (589)
Q Consensus 296 ~~~~~~~~~~~~~~kI~IIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 375 (589)
+. +.+++.|++|+|||+|+||++||..++.+|++|+++|++++.++++.+++++.+++.+++|.+++.+.+..+++
T Consensus 327 ~~----~~~~~~i~~v~ViGaG~MG~gIA~~~a~~G~~V~l~d~~~~~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~ 402 (737)
T TIGR02441 327 KF----GKPQRPVKTLAVLGAGLMGAGIAQVSVDKGLKTVLKDATPAGLDRGQQQVFKGLNKKVKRKKITSLERDSILSN 402 (737)
T ss_pred CC----CCCCCcccEEEEECCCHhHHHHHHHHHhCCCcEEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhC
Confidence 53 22457899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCccCCCCCCEEEEeccCChHHHHHHHHHHHHhCCCCcEEEecCCCCCHHHHhcccCCCCcEEEecCCCCCCCCCe
Q 007805 376 LKGVLDYSEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPL 455 (589)
Q Consensus 376 i~~~~~~~~~~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~~~~~~~~~~~r~ig~h~~~p~~~~~l 455 (589)
++.+++++++++||+|||||||++++|+++|++|++++++++||+||||++++++++..+.+|+||+|+|||||++.+++
T Consensus 403 i~~~~~~~~~~~aDlViEAv~E~l~~K~~vf~~l~~~~~~~~ilasNTSsl~i~~la~~~~~p~r~ig~Hff~P~~~m~L 482 (737)
T TIGR02441 403 LTPTLDYSGFKNADMVIEAVFEDLSLKHKVIKEVEAVVPPHCIIASNTSALPIKDIAAVSSRPEKVIGMHYFSPVDKMQL 482 (737)
T ss_pred eEEeCCHHHhccCCeehhhccccHHHHHHHHHHHHhhCCCCcEEEEcCCCCCHHHHHhhcCCccceEEEeccCCcccCce
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeEecCCCCCHHHHHHHHHHHHHcCCeeEEEcCCCCcccccccHHHHHHHHHHHHcCCCHHHHHHHHHhcCCCCcHHHHH
Q 007805 456 LEIVRTERTSAQVILDLMTVGKIIKKVPVVVGNCTGFAVNRAFFPYSQSARLLVSLGVDVFRIDSAIRSFGLPIGPFQLL 535 (589)
Q Consensus 456 veiv~~~~t~~e~~~~~~~l~~~lG~~~v~v~d~~Gfi~nRi~~~~~~Ea~~l~~~Gv~~~~iD~~~~~~g~p~Gpf~~~ 535 (589)
|||++++.|++++++.+.++++.+||.||+++|.||||+||++.++++||++++++|++++|||+++.++|||||||+++
T Consensus 483 vEvv~g~~Ts~~~~~~~~~~~~~lgk~pv~v~d~pGFi~NRi~~~~~~ea~~lv~eGv~~~~ID~a~~~~G~p~GP~~l~ 562 (737)
T TIGR02441 483 LEIITHDGTSKDTLASAVAVGLKQGKVVIVVKDGPGFYTTRCLGPMLAEVIRLLQEGVDPKKLDKLTTKFGFPVGAATLA 562 (737)
T ss_pred EEEeCCCCCCHHHHHHHHHHHHHCCCeEEEECCcCCchHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHcCCCCCHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhchHHHHHHHHHHHHhCCCCCC--chHHHHHHHHcCCCCc---ccceeeCCCc
Q 007805 536 DLAGYGVAAATSKEFDKAFPDRSF--QSPLVDLLLKSGRNGN---KGFSFLFVFS 585 (589)
Q Consensus 536 D~~Gld~~~~~~~~l~~~~~~~~~--~~~~l~~~v~~g~~G~---~Gfy~y~~~~ 585 (589)
|++|||+++++.+.+++.+++++. |++++++|+++|++|+ +|||+|++++
T Consensus 563 D~vGld~~~~v~~~l~~~~~~~~~~~~~~~l~~~v~~G~~G~k~G~GfY~y~~~~ 617 (737)
T TIGR02441 563 DEVGVDVAEHVAEDLGKAFGERFGGGSAELLSELVKAGFLGRKSGKGIFIYQEGK 617 (737)
T ss_pred HHhhHHHHHHHHHHHHHhcCcccccccCHHHHHHHHCCCCcccCCCeeEEcCCCC
Confidence 999999999999999999988653 6899999999999999 9999998664
No 2
>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.
Probab=100.00 E-value=2.7e-110 Score=935.06 Aligned_cols=579 Identities=31% Similarity=0.507 Sum_probs=517.6
Q ss_pred CCCC--cEEEEEecCcEEEEEeCCC-CCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCCcCCCCchhhhhccCCC
Q 007805 1 MAAP--RVTMEVGNDGVAIITLINP-PVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAG 77 (589)
Q Consensus 1 M~~~--~~~~~~~~~~v~~i~l~~p-~~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~ 77 (589)
|++. ++.++..+++|++|+|||| +.|++|.+|+.+|.+++++++.|+++|+|||||.|++||+|+|++++.......
T Consensus 1 ~~~~~~~i~~~~~~~gva~Itlnrp~~~Nal~~~~~~eL~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~ 80 (714)
T TIGR02437 1 MIYQGKTIQVTALEDGIAELKFDAPGSVNKFDRATLASLDQALDAIKAQSSLKGVILTSGKDAFIVGADITEFLGLFALP 80 (714)
T ss_pred CCcccceEEEEEccCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCccccCcCHHHHhhcccCC
Confidence 5555 5777754689999999999 579999999999999999999999999999999999999999999985421111
Q ss_pred --cccccchhHHHHHHHHHHhCCCcEEEEeCCcccchhhHHhhhcCEEEEeCCceEeccccccCCCCChhhhhhHhhhcC
Q 007805 78 --DVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVG 155 (589)
Q Consensus 78 --~~~~~~~~~~~~~~~~l~~~~kp~iaav~G~a~GgG~~lala~D~~ia~~~a~~~~pe~~~Gl~p~~g~~~~l~~~~G 155 (589)
....+....++++ +.+.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|+|++|
T Consensus 81 ~~~~~~~~~~~~~~~-~~i~~~pkPvIAai~G~alGGGleLalacD~ria~~~a~fglPEv~lGl~Pg~Ggt~rL~rliG 159 (714)
T TIGR02437 81 DAELIQWLLFANSIF-NKLEDLPVPTVAAINGIALGGGCECVLATDFRIADDTAKIGLPETKLGIMPGFGGTVRLPRVIG 159 (714)
T ss_pred HHHHHHHHHHHHHHH-HHHHhCCCCEEEEECCeeecHHHHHHHhCCEEEEeCCCEEecchhhcCCCCCccHHHHHHHHhC
Confidence 1112222344566 6799999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCCCCHHHHHHcCCcceecCchHHHHHHHHHHHHHHhcChhhhhhhhccCCCCC----hHHHHHHHHHHH
Q 007805 156 LSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGS----LSEAREVLKLAR 231 (589)
Q Consensus 156 ~~~a~~l~ltg~~~~a~~A~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~ 231 (589)
..+|++|++||++++|++|+++||||++||++++.+++.++++++....+.+.+.. ..+... ...........+
T Consensus 160 ~~~A~~llltG~~~~A~eA~~~GLvd~vv~~~~l~~~a~~~a~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 237 (714)
T TIGR02437 160 ADNALEWIASGKENRAEDALKVGAVDAVVTADKLGAAALQLLKDAINGKLDWKAKR--QPKLEPLKLSKIEAMMSFTTAK 237 (714)
T ss_pred HHHHHHHHHcCCcCCHHHHHHCCCCcEeeChhHHHHHHHHHHHHHhhcCCcccccC--CCCcccccccchHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999988766432211111 001111 011111133334
Q ss_pred H-HHHHhCCCChhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHhHHHHHHHhhhccCCCCCCCCCCCCCccce
Q 007805 232 L-QAKKTAPNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKVPNVTDIGLKPRGVRK 310 (589)
Q Consensus 232 ~-~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~af~~~r~~~~~~~~~~~~~~~~~~~k 310 (589)
. ..+++.++||||..+.++++++...+++++++.|.+.|.+++.|++++++++.|+.+|..++.+.. ....++.+++
T Consensus 238 ~~~~~~~~~~~pap~~~~~~v~~~~~~~~~~gl~~E~~~f~~l~~s~~a~~l~~~ff~~r~~~~~~~~--~~~~~~~i~~ 315 (714)
T TIGR02437 238 GMVAQVAGPHYPAPMTAVKTIEKAARFGRDKALEIEAKGFVKLAKTSEAKALIGLFLNDQYVKGKAKK--ADKIAKDVKQ 315 (714)
T ss_pred HHHHHhhcCCCCCHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHhhhHhhcCCCCC--CCCCccccce
Confidence 4 456789999999999999999999999999999999999999999999999999999999876522 1235678999
Q ss_pred EEEEcCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCccCCCCCCE
Q 007805 311 VAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKDVDM 390 (589)
Q Consensus 311 I~IIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~aDl 390 (589)
|+|||+|+||++||..++.+|++|+++|++++.++++.+++++.+++.+++|.+++.+.+..+++++.+++++.+++||+
T Consensus 316 v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~aDl 395 (714)
T TIGR02437 316 AAVLGAGIMGGGIAYQSASKGTPIVMKDINQHSLDLGLTEAAKLLNKQVERGRITPAKMAGVLNGITPTLSYAGFDNVDI 395 (714)
T ss_pred EEEECCchHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEEeCCHHHhcCCCE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999988999999
Q ss_pred EEEeccCChHHHHHHHHHHHHhCCCCcEEEecCCCCCHHHHhcccCCCCcEEEecCCCCCCCCCeeeEecCCCCCHHHHH
Q 007805 391 VIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVIL 470 (589)
Q Consensus 391 VIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~~~~~~~~~~~r~ig~h~~~p~~~~~lveiv~~~~t~~e~~~ 470 (589)
|||||||++++|+++|++|++++++++|++||||++++++++..+++|+||+|+|||||++.+++|||++++.|++++++
T Consensus 396 ViEav~E~l~~K~~vf~~l~~~~~~~~ilasnTS~l~i~~ia~~~~~p~r~ig~Hff~P~~~~~lvEvv~g~~Ts~~~~~ 475 (714)
T TIGR02437 396 VVEAVVENPKVKAAVLAEVEQHVREDAILASNTSTISISLLAKALKRPENFCGMHFFNPVHRMPLVEVIRGEKSSDETIA 475 (714)
T ss_pred EEEcCcccHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHHHHhhcCCcccEEEEecCCCcccCceEeecCCCCCCHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCeeEEEcCCCCcccccccHHHHHHHHHHHHcCCCHHHHHHHH-HhcCCCCcHHHHHHHhchHHHHHHHHH
Q 007805 471 DLMTVGKIIKKVPVVVGNCTGFAVNRAFFPYSQSARLLVSLGVDVFRIDSAI-RSFGLPIGPFQLLDLAGYGVAAATSKE 549 (589)
Q Consensus 471 ~~~~l~~~lG~~~v~v~d~~Gfi~nRi~~~~~~Ea~~l~~~Gv~~~~iD~~~-~~~g~p~Gpf~~~D~~Gld~~~~~~~~ 549 (589)
.+.++++.+||.||+++|.||||+||++.++++||++++++|+++++||+++ .++|||||||+++|++|||+.+++.+.
T Consensus 476 ~~~~~~~~lgk~pv~v~d~pGfi~NRl~~~~~~ea~~l~~eG~~~~~ID~a~~~~~G~p~GPf~l~D~~Gld~~~~i~~~ 555 (714)
T TIGR02437 476 TVVAYASKMGKTPIVVNDCPGFFVNRVLFPYFGGFSKLLRDGADFVRIDKVMEKQFGWPMGPAYLLDVVGIDTGHHAQAV 555 (714)
T ss_pred HHHHHHHHcCCEEEEeCCcccchHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHhcCCCccCHHHHHHhhhHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999 789999999999999999999999999
Q ss_pred HHHhCCCCCC--chHHHHHHHHcCCCCc---ccceeeCCC
Q 007805 550 FDKAFPDRSF--QSPLVDLLLKSGRNGN---KGFSFLFVF 584 (589)
Q Consensus 550 l~~~~~~~~~--~~~~l~~~v~~g~~G~---~Gfy~y~~~ 584 (589)
++..+++++. +++++++|+++|++|+ +|||+|+.+
T Consensus 556 ~~~~~~~~~~~~~~~~l~~~v~~G~lG~K~g~GfY~y~~~ 595 (714)
T TIGR02437 556 MAEGFPDRMGKDGRDAIDALFEAKRLGQKNGKGFYAYEAD 595 (714)
T ss_pred HHHhcCcccccchhHHHHHHHHCCCCcccCCCEEEecccC
Confidence 9999887642 5689999999999999 999999643
No 3
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=100.00 E-value=3.2e-110 Score=937.17 Aligned_cols=579 Identities=32% Similarity=0.527 Sum_probs=517.8
Q ss_pred CCCC--cEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCCcCCCCchhhhhccCCC
Q 007805 1 MAAP--RVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAG 77 (589)
Q Consensus 1 M~~~--~~~~~~~~~~v~~i~l~~p~-~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~ 77 (589)
|++. ++.++..+++|++||||||+ .|++|.+|+++|.++++.++.|+++|+|||||.|++||+|+|++++.......
T Consensus 1 ~~~~~~~i~~~~~~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~FcaG~Dl~~~~~~~~~~ 80 (715)
T PRK11730 1 MIYQGKTLQVDWLEDGIAELVFDAPGSVNKLDRATLASLGEALDALEAQSDLKGLLLTSAKDAFIVGADITEFLSLFAAP 80 (715)
T ss_pred CCcccceEEEEEcCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCcEEEEEECCCCccccCcCHHHHhhhccCC
Confidence 6654 57777436899999999995 79999999999999999999999999999999999999999999875421111
Q ss_pred --cccccchhHHHHHHHHHHhCCCcEEEEeCCcccchhhHHhhhcCEEEEeCCceEeccccccCCCCChhhhhhHhhhcC
Q 007805 78 --DVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVG 155 (589)
Q Consensus 78 --~~~~~~~~~~~~~~~~l~~~~kp~iaav~G~a~GgG~~lala~D~~ia~~~a~~~~pe~~~Gl~p~~g~~~~l~~~~G 155 (589)
....+.....+++ .++.++|||+||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|+|++|
T Consensus 81 ~~~~~~~~~~~~~~~-~~i~~~~kPvIAav~G~a~GgG~~LAlacD~ria~~~a~f~~pe~~lGl~p~~g~~~~L~rlvG 159 (715)
T PRK11730 81 EEELSQWLHFANSIF-NRLEDLPVPTVAAINGYALGGGCECVLATDYRVASPDARIGLPETKLGIMPGFGGTVRLPRLIG 159 (715)
T ss_pred HHHHHHHHHHHHHHH-HHHHcCCCCEEEEECCEeehHHHHHHHhCCEEEEcCCCEEeCchhhcCCCCCchHHHHHHHhcC
Confidence 0112222333455 6789999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCCCCHHHHHHcCCcceecCchHHHHHHHHHHHHHHhcChhhhhhhhccCCCCC----hHHHHHHHHHHH
Q 007805 156 LSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGS----LSEAREVLKLAR 231 (589)
Q Consensus 156 ~~~a~~l~ltg~~~~a~~A~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~ 231 (589)
..+|++|++||++++|+||+++||||+|||++++++++.++|++++..+..+.... ..+.++ +......++..+
T Consensus 160 ~~~A~~llltG~~~~A~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~--~~~~~p~a~~~~~~~~~~~~~k 237 (715)
T PRK11730 160 ADNALEWIAAGKDVRAEDALKVGAVDAVVAPEKLQEAALALLKQAIAGKLDWKARR--QPKLEPLKLSKIEAMMSFTTAK 237 (715)
T ss_pred HHHHHHHHHcCCcCCHHHHHHCCCCeEecCHHHHHHHHHHHHHHHhhcCCcccccc--CcccccccccchhHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999998753221111 001011 011122333333
Q ss_pred HH-HHHhCCCChhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHhHHHHHHHhhhccCCCCCCCCCCCCCccce
Q 007805 232 LQ-AKKTAPNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKVPNVTDIGLKPRGVRK 310 (589)
Q Consensus 232 ~~-~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~af~~~r~~~~~~~~~~~~~~~~~~~k 310 (589)
+. .|++.++||++..++++++.+...+++++++.|.+.|..++.|+|++|++++|+++|..++.+... ..+++.|++
T Consensus 238 ~~~~~~~~~~~pa~~~~~~~i~~~~~~~~~~~l~~E~~~~~~~~~s~d~~egi~aF~~~~~~~~~~~~~--~~~~~~i~~ 315 (715)
T PRK11730 238 GMVAQKAGKHYPAPMTAVKTIEAAAGLGRDEALELEAKGFVKLAKTNVARALVGIFLNDQYVKGKAKKL--AKDAKPVKQ 315 (715)
T ss_pred HHHHHhhccCCccHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCCCCC--CCCccccce
Confidence 33 367889999999999999999999999999999999999999999999999999999998765321 124567999
Q ss_pred EEEEcCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCccCCCCCCE
Q 007805 311 VAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKDVDM 390 (589)
Q Consensus 311 I~IIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~aDl 390 (589)
|+|||+|+||.+||..++.+|++|+++|++++.++++.+++++.+.+.+++|.+++.+.+..+++++++++++.+++||+
T Consensus 316 v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~aDl 395 (715)
T PRK11730 316 AAVLGAGIMGGGIAYQSASKGVPVIMKDINQKALDLGMTEAAKLLNKQVERGKIDGAKMAGVLSSIRPTLDYAGFERVDV 395 (715)
T ss_pred EEEECCchhHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEEeCCHHHhcCCCE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999988999999
Q ss_pred EEEeccCChHHHHHHHHHHHHhCCCCcEEEecCCCCCHHHHhcccCCCCcEEEecCCCCCCCCCeeeEecCCCCCHHHHH
Q 007805 391 VIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVIL 470 (589)
Q Consensus 391 VIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~~~~~~~~~~~r~ig~h~~~p~~~~~lveiv~~~~t~~e~~~ 470 (589)
|||||||++++|+++|++|++++++++||+||||++++++++..+.+|+||+|+|||||++.+++|||++++.|++++++
T Consensus 396 ViEav~E~l~~K~~vf~~l~~~~~~~~ilasNTSsl~i~~la~~~~~p~r~~g~Hff~P~~~~~lVEvv~g~~T~~~~~~ 475 (715)
T PRK11730 396 VVEAVVENPKVKAAVLAEVEQKVREDTILASNTSTISISLLAKALKRPENFCGMHFFNPVHRMPLVEVIRGEKTSDETIA 475 (715)
T ss_pred EEecccCcHHHHHHHHHHHHhhCCCCcEEEEcCCCCCHHHHHhhcCCCccEEEEecCCcccccceEEeeCCCCCCHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCeeEEEcCCCCcccccccHHHHHHHHHHHHcCCCHHHHHHHH-HhcCCCCcHHHHHHHhchHHHHHHHHH
Q 007805 471 DLMTVGKIIKKVPVVVGNCTGFAVNRAFFPYSQSARLLVSLGVDVFRIDSAI-RSFGLPIGPFQLLDLAGYGVAAATSKE 549 (589)
Q Consensus 471 ~~~~l~~~lG~~~v~v~d~~Gfi~nRi~~~~~~Ea~~l~~~Gv~~~~iD~~~-~~~g~p~Gpf~~~D~~Gld~~~~~~~~ 549 (589)
.+.++++.+||.||+++|.||||+||++.++++||++++++|.+++|||+++ .++|||+|||+++|.+|||+++++.+.
T Consensus 476 ~~~~~~~~lgk~pv~v~d~pGfv~nRi~~~~~~ea~~lv~~Ga~~e~ID~a~~~~~G~~~GP~~~~D~~Gld~~~~~~~~ 555 (715)
T PRK11730 476 TVVAYASKMGKTPIVVNDCPGFFVNRVLFPYFAGFSQLLRDGADFRQIDKVMEKQFGWPMGPAYLLDVVGIDTAHHAQAV 555 (715)
T ss_pred HHHHHHHHhCCceEEecCcCchhHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhhCCCccCHHHHHHhhchHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999 789999999999999999999999999
Q ss_pred HHHhCCCCCC--chHHHHHHHHcCCCCc---ccceeeCCC
Q 007805 550 FDKAFPDRSF--QSPLVDLLLKSGRNGN---KGFSFLFVF 584 (589)
Q Consensus 550 l~~~~~~~~~--~~~~l~~~v~~g~~G~---~Gfy~y~~~ 584 (589)
++..+++++. +++++++|+++|++|+ +|||+|+.+
T Consensus 556 ~~~~~~~~~~~~~~~~l~~~v~~G~~G~k~g~GfY~y~~~ 595 (715)
T PRK11730 556 MAEGFPDRMKKDYRDAIDVLFEAKRFGQKNGKGFYRYEED 595 (715)
T ss_pred HHHhcCCccccchhHHHHHHHHCCCCccccCCEeEecccC
Confidence 9999888643 5789999999999999 999999744
No 4
>TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog.
Probab=100.00 E-value=6.6e-109 Score=924.42 Aligned_cols=561 Identities=36% Similarity=0.591 Sum_probs=507.6
Q ss_pred EEEEEecCcEEEEEeCCC-C-CCCCCHHHHHHHHHHHHHHhcCCCceEEEE-EcCCCCCcCCCCchhhhhccCCCccccc
Q 007805 6 VTMEVGNDGVAIITLINP-P-VNALAIPIVAGLKDKFEEATSRDDVKAIVL-TGNGGRFSGGFDINVFQKVHGAGDVSLM 82 (589)
Q Consensus 6 ~~~~~~~~~v~~i~l~~p-~-~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl-~g~g~~F~aG~Dl~~~~~~~~~~~~~~~ 82 (589)
+.++..+++|++|||||| + .|++|.+|+++|.+++++++.|+++|+||| +|.|++||+|+|++++...........+
T Consensus 2 ~~~~~~~~~Va~itlnrp~~~~Nal~~~~~~eL~~~l~~~~~d~~vr~VVl~~g~g~~FcaG~Dl~~~~~~~~~~~~~~~ 81 (699)
T TIGR02440 2 FTLTVREDGIAILTIDVPGEKMNTLKAEFADQVSEILSQLKRDKSIRGLVLVSGKPDNFIAGADISMLAACQTAGEAKAL 81 (699)
T ss_pred eEEEEcCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCceeeccCchhhhccCChhHHHHH
Confidence 344554789999999999 4 699999999999999999999999999987 6888999999999987542111111122
Q ss_pred chhHHHHHHHHHHhCCCcEEEEeCCcccchhhHHhhhcCEEEEeCC--ceEeccccccCCCCChhhhhhHhhhcCHHHHH
Q 007805 83 PDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPK--TQLGLPELTLGVIPGFGGTQRLPRLVGLSKAI 160 (589)
Q Consensus 83 ~~~~~~~~~~~l~~~~kp~iaav~G~a~GgG~~lala~D~~ia~~~--a~~~~pe~~~Gl~p~~g~~~~l~~~~G~~~a~ 160 (589)
....+.++ ..+.++||||||+|||+|+|||++|+|+||+|||+++ ++|++||+++|++|++|++++|+|++|..+|+
T Consensus 82 ~~~~~~~~-~~l~~~~kPvIAaVnG~a~GgG~~LaLacD~ria~~~~~a~fg~pev~lGl~p~~g~~~~L~r~vG~~~A~ 160 (699)
T TIGR02440 82 AQQGQVLF-AELEALPIPVVAAIHGACLGGGLELALACHSRVCSDDDKTVLGLPEVQLGLLPGSGGTQRLPRLIGVSTAL 160 (699)
T ss_pred HHHHHHHH-HHHHhCCCCEEEEECCEeecHHHHHHHhCCEEEEcCCCCcEEechhhcccCCCCccHHHHHHHhcCHHHHH
Confidence 22334555 6799999999999999999999999999999999976 79999999999999999999999999999999
Q ss_pred HHHHcCCCCCHHHHHHcCCcceecCchHHHHHHHHHHHH-------------HHhcChhhhhhhhccCCCCChHHHHHHH
Q 007805 161 EMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALD-------------IAARRKPWIRSLHRTDKLGSLSEAREVL 227 (589)
Q Consensus 161 ~l~ltg~~~~a~~A~~~Glv~~vv~~~~l~~~a~~~a~~-------------la~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (589)
+|++||++++|++|+++||||++||++++++++.++|++ +++.+|.+. ....
T Consensus 161 ~llltG~~~~a~eA~~~GLV~~vv~~~~l~~~a~~~A~~~~~~~~~~~~~~~~~~~~~~a~---------------~~~~ 225 (699)
T TIGR02440 161 DMILTGKQLRAKQALKLGLVDDVVPQSILLDTAVEMALKGKPIRKPLSLQERLLEGTPLGR---------------ALLF 225 (699)
T ss_pred HHHHcCCcCCHHHHHhCCCCcEecChhHHHHHHHHHHHhCCCCCCCccchhhhcccCchhH---------------HHHH
Confidence 999999999999999999999999999999999999984 222222111 1112
Q ss_pred HHH-HHHHHHhCCCChhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHhHHHHHHHhhhccCCCCCCCCCCCCC
Q 007805 228 KLA-RLQAKKTAPNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKVPNVTDIGLKPR 306 (589)
Q Consensus 228 ~~~-~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~af~~~r~~~~~~~~~~~~~~~~ 306 (589)
..+ +...|++.++|||+.++|++++.+...+++++++.|.+.|..++.|+|+++++++|+.++..++.++. . ..+.
T Consensus 226 ~~~~k~~~~~~~~~~~a~~~~~~~i~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~~~~f~~~~~~~~~~~~-~--~~~~ 302 (699)
T TIGR02440 226 DQAAKKTAKKTQGNYPAAERILDVVRQGLAQGMQKGLDAEARAFGELVMTPESAALRSIFFATTEMKKETGS-D--ATPA 302 (699)
T ss_pred HHHHHHHHHhcccCChhHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCCCC-C--CCcc
Confidence 222 23346788999999999999999999999999999999999999999999999999999999876552 2 2346
Q ss_pred ccceEEEEcCCCCcHHHHHHHH-hCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCccCC
Q 007805 307 GVRKVAVIGGGLMGSGIATAHI-LNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEF 385 (589)
Q Consensus 307 ~~~kI~IIG~G~mG~~iA~~l~-~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~ 385 (589)
++++|+|||+|+||++||..++ .+|++|+++|++++.++++..++.+.+++.+++|.+++.+.+..+.+|+.+++++++
T Consensus 303 ~i~~v~ViGaG~mG~~iA~~~a~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 382 (699)
T TIGR02440 303 KIKKVGILGGGLMGGGIASVTATKAGIPVRIKDINPQGINNALKYAWKLLDKGVKRRHMTPAERDNQMALITGTTDYRGF 382 (699)
T ss_pred cccEEEEECCcHHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHcCeEEeCChHHh
Confidence 7999999999999999999998 589999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCEEEEeccCChHHHHHHHHHHHHhCCCCcEEEecCCCCCHHHHhcccCCCCcEEEecCCCCCCCCCeeeEecCCCCC
Q 007805 386 KDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTS 465 (589)
Q Consensus 386 ~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~~~~~~~~~~~r~ig~h~~~p~~~~~lveiv~~~~t~ 465 (589)
++||+|||||||++++|+++|++|++++++++||+||||+++++++++.+.+|+||+|+|||||++.+++|||++++.|+
T Consensus 383 ~~adlViEav~E~l~~K~~v~~~l~~~~~~~~ilasnTS~l~i~~la~~~~~p~r~~g~HffnP~~~~~lVEvv~g~~T~ 462 (699)
T TIGR02440 383 KDVDIVIEAVFEDLALKHQMVKDIEQECAAHTIFASNTSSLPIGQIAAAASRPENVIGLHYFSPVEKMPLVEVIPHAGTS 462 (699)
T ss_pred ccCCEEEEeccccHHHHHHHHHHHHhhCCCCcEEEeCCCCCCHHHHHHhcCCcccEEEEecCCccccCceEEEeCCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHcCCeeEEEcCCCCcccccccHHHHHHHHHHHHcCCCHHHHHHHHHhcCCCCcHHHHHHHhchHHHHH
Q 007805 466 AQVILDLMTVGKIIKKVPVVVGNCTGFAVNRAFFPYSQSARLLVSLGVDVFRIDSAIRSFGLPIGPFQLLDLAGYGVAAA 545 (589)
Q Consensus 466 ~e~~~~~~~l~~~lG~~~v~v~d~~Gfi~nRi~~~~~~Ea~~l~~~Gv~~~~iD~~~~~~g~p~Gpf~~~D~~Gld~~~~ 545 (589)
+++++.+.++++.+||.||+++|.||||+||++.++++||++++++|++++|||+++.++|||+|||+++|.+|||++++
T Consensus 463 ~~~~~~~~~~~~~~gk~pv~v~d~pGfi~nRl~~~~~~Ea~~l~~~G~~~~dID~a~~~~G~p~GPf~l~D~vGld~~~~ 542 (699)
T TIGR02440 463 EQTIATTVALAKKQGKTPIVVADKAGFYVNRILAPYMNEAARLLLEGEPVEHIDKALVKFGFPVGPITLLDEVGIDVGAK 542 (699)
T ss_pred HHHHHHHHHHHHHcCCeEEEEccccchHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHcCCCcCHHHHHHHhchHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999988999999999999999999999
Q ss_pred HHHHHHHhCCCCCCchHHHHHHHHcCCCCc---ccceeeCCCc
Q 007805 546 TSKEFDKAFPDRSFQSPLVDLLLKSGRNGN---KGFSFLFVFS 585 (589)
Q Consensus 546 ~~~~l~~~~~~~~~~~~~l~~~v~~g~~G~---~Gfy~y~~~~ 585 (589)
+++.+++.+++++.|++++++||++|++|+ +|||+|+.++
T Consensus 543 i~~~l~~~~~~~~~~~~~l~~~v~~G~lG~ksg~GfY~y~~~~ 585 (699)
T TIGR02440 543 ISPILEAELGERFKAPAVFDKLLSDDRKGRKNGKGFYLYGAAT 585 (699)
T ss_pred HHHHHHHhcCCCCCCcHHHHHHHHCCCCcccCCcEEEeCCCCC
Confidence 999999999998889999999999999999 9999998653
No 5
>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=100.00 E-value=1.2e-107 Score=916.65 Aligned_cols=574 Identities=35% Similarity=0.560 Sum_probs=509.6
Q ss_pred cEEEEEecCcEEEEEeCCC--CCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCC-CCCcCCCCchhhhhccCCCcccc
Q 007805 5 RVTMEVGNDGVAIITLINP--PVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNG-GRFSGGFDINVFQKVHGAGDVSL 81 (589)
Q Consensus 5 ~~~~~~~~~~v~~i~l~~p--~~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g-~~F~aG~Dl~~~~~~~~~~~~~~ 81 (589)
++.++.++++|++|+|||| +.|++|.+|+++|.+++++++.|+++|+|||+|.+ ++||+|+|++++...........
T Consensus 6 ~~~~~~~~~~va~itlnrp~~~~Nal~~~~~~~L~~~l~~~~~d~~vr~vVl~~~~~~~F~aG~Dl~~~~~~~~~~~~~~ 85 (708)
T PRK11154 6 AFTLNVREDNIAVITIDVPGEKMNTLKAEFAEQVRAILKQLREDKELKGVVFISGKPDNFIAGADINMLAACKTAQEAEA 85 (708)
T ss_pred eEEEEEcCCCEEEEEECCCCCCCcCCCHHHHHHHHHHHHHHHhCCCceEEEEecCCCCCcccCcChHHhhccCCHHHHHH
Confidence 4667775689999999999 47999999999999999999999999999999864 89999999998754221111112
Q ss_pred cchhHHHHHHHHHHhCCCcEEEEeCCcccchhhHHhhhcCEEEEeCC--ceEeccccccCCCCChhhhhhHhhhcCHHHH
Q 007805 82 MPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPK--TQLGLPELTLGVIPGFGGTQRLPRLVGLSKA 159 (589)
Q Consensus 82 ~~~~~~~~~~~~l~~~~kp~iaav~G~a~GgG~~lala~D~~ia~~~--a~~~~pe~~~Gl~p~~g~~~~l~~~~G~~~a 159 (589)
+....++++ +++.++||||||+|||+|+|||++|+++||+|||+++ ++|++||+++|++|++|++++|++++|..+|
T Consensus 86 ~~~~~~~~~-~~i~~~~kPvIAaV~G~a~GgG~~LalacD~ria~~~a~a~fg~pe~~lGl~p~~gg~~~L~r~vG~~~A 164 (708)
T PRK11154 86 LARQGQQLF-AEIEALPIPVVAAIHGACLGGGLELALACHYRVCTDDPKTVLGLPEVQLGLLPGSGGTQRLPRLIGVSTA 164 (708)
T ss_pred HHHHHHHHH-HHHHhCCCCEEEEECCeeechHHHHHHhCCEEEEeCCCCceEeCccccCCCCCCccHHhHHHhhcCHHHH
Confidence 222334455 6799999999999999999999999999999999986 4899999999999999999999999999999
Q ss_pred HHHHHcCCCCCHHHHHHcCCcceecCchHHHHHHHHHHHHHHhcChhhhhhhhccCCCCChHHHHHHHHHHHHH-HHHhC
Q 007805 160 IEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQ-AKKTA 238 (589)
Q Consensus 160 ~~l~ltg~~~~a~~A~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 238 (589)
++|++||++++|+||+++||||++||++++.+++.++|+++....+ .+....+....++. .....+..++.+ .++++
T Consensus 165 ~~llltG~~i~a~eA~~~GLv~~vv~~~~l~~~a~~~A~~~~~~~~-~~~~~~~~~~~~p~-~~~~~~~~~~~~~~~~~~ 242 (708)
T PRK11154 165 LDMILTGKQLRAKQALKLGLVDDVVPHSILLEVAVELAKKGKPARR-PLPVRERLLEGNPL-GRALLFKQARKKTLAKTQ 242 (708)
T ss_pred HHHHHhCCcCCHHHHHHCCCCcEecChHHHHHHHHHHHHhcCCccC-cCCchhhhcccCch-hHHHHHHHHHHHHHHhcc
Confidence 9999999999999999999999999999999999999988421110 00000000000000 111123333333 45788
Q ss_pred CCChhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHhHHHHHHHhhhccCCCCCCCCCCCCCccceEEEEcCCC
Q 007805 239 PNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKVPNVTDIGLKPRGVRKVAVIGGGL 318 (589)
Q Consensus 239 ~~~~a~~~~~~~~~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~af~~~r~~~~~~~~~~~~~~~~~~~kI~IIG~G~ 318 (589)
++|||+..+|++++.+...+++++++.|.+.|..++.|+|+++++++|+.+|..++.+.. + ..+..++||+|||+|+
T Consensus 243 g~~~A~~~~k~~i~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~~~aF~~~~~~~~~~~~-~--~~~~~i~~v~ViGaG~ 319 (708)
T PRK11154 243 GNYPAPERILDVVRTGLEKGMSSGYEAEARAFGELAMTPESAALRSIFFATTEMKKDTGS-D--AKPRPVNKVGVLGGGL 319 (708)
T ss_pred cCChHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCCCC-C--CCCCcccEEEEECCch
Confidence 899999999999999999999999999999999999999999999999999998876542 2 2446799999999999
Q ss_pred CcHHHHHHHH-hCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCccCCCCCCEEEEeccC
Q 007805 319 MGSGIATAHI-LNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKDVDMVIEAVIE 397 (589)
Q Consensus 319 mG~~iA~~l~-~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~aDlVIeavpe 397 (589)
||++||..++ .+|++|+++|++++.++++.+++++.+++.+++|.+++.+.+..+++|+++++++++++||+|||||||
T Consensus 320 mG~giA~~~a~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~aDlViEav~E 399 (708)
T PRK11154 320 MGGGIAYVTATKAGLPVRIKDINPQGINHALKYSWDLLDKKVKRRHLKPSERDKQMALISGTTDYRGFKHADVVIEAVFE 399 (708)
T ss_pred hhHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhcEEEeCChHHhccCCEEeecccc
Confidence 9999999999 889999999999999999999999999999999999999999999999999999889999999999999
Q ss_pred ChHHHHHHHHHHHHhCCCCcEEEecCCCCCHHHHhcccCCCCcEEEecCCCCCCCCCeeeEecCCCCCHHHHHHHHHHHH
Q 007805 398 SVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMTVGK 477 (589)
Q Consensus 398 ~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~~~~~~~~~~~r~ig~h~~~p~~~~~lveiv~~~~t~~e~~~~~~~l~~ 477 (589)
++++|+++|++|+++++|++||+||||++++++++..+.+|+||+|+|||||++.+++|||++++.|++++++.+.++++
T Consensus 400 ~~~~K~~v~~~le~~~~~~~ilasnTS~l~i~~la~~~~~p~r~ig~Hff~P~~~~~lVEvv~g~~Ts~~~~~~~~~~~~ 479 (708)
T PRK11154 400 DLALKQQMVAEVEQNCAPHTIFASNTSSLPIGQIAAAAARPEQVIGLHYFSPVEKMPLVEVIPHAKTSAETIATTVALAK 479 (708)
T ss_pred cHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHHHHHhcCcccceEEEecCCccccCceEEEECCCCCCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCeeEEEcCCCCcccccccHHHHHHHHHHHHcCCCHHHHHHHHHhcCCCCcHHHHHHHhchHHHHHHHHHHHHhCCCC
Q 007805 478 IIKKVPVVVGNCTGFAVNRAFFPYSQSARLLVSLGVDVFRIDSAIRSFGLPIGPFQLLDLAGYGVAAATSKEFDKAFPDR 557 (589)
Q Consensus 478 ~lG~~~v~v~d~~Gfi~nRi~~~~~~Ea~~l~~~Gv~~~~iD~~~~~~g~p~Gpf~~~D~~Gld~~~~~~~~l~~~~~~~ 557 (589)
.+||.|++++|.||||+||++.+++|||++++++|++++|||.++.++|||+|||+++|.+|||+++++++.+++.++++
T Consensus 480 ~~gk~pv~v~d~pGfi~nRl~~~~~~EA~~lv~eGv~~~dID~a~~~~G~p~GPf~~~D~~Gld~~~~i~~~l~~~~~~~ 559 (708)
T PRK11154 480 KQGKTPIVVRDGAGFYVNRILAPYINEAARLLLEGEPIEHIDAALVKFGFPVGPITLLDEVGIDVGTKIIPILEAALGER 559 (708)
T ss_pred HcCCceEEEeccCcHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHcCCCCCHHHHHHHhhhHHHHHHHHHHHHHcCCC
Confidence 99999999999999999999999999999999999999999999988999999999999999999999999999999887
Q ss_pred CCchHHHHHHHHcCCCCc---ccceeeCCC
Q 007805 558 SFQSPLVDLLLKSGRNGN---KGFSFLFVF 584 (589)
Q Consensus 558 ~~~~~~l~~~v~~g~~G~---~Gfy~y~~~ 584 (589)
+.|++++++|+++|++|+ +|||+|+.+
T Consensus 560 ~~~~~~l~~~v~~g~~G~k~g~GfY~y~~~ 589 (708)
T PRK11154 560 FSAPAAFDKLLNDDRKGRKNGRGFYLYGQK 589 (708)
T ss_pred CCCCHHHHHHHHCCCCcccCCceEEECCCC
Confidence 778999999999999999 999999853
No 6
>COG1250 FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism]
Probab=100.00 E-value=1.6e-64 Score=502.63 Aligned_cols=277 Identities=40% Similarity=0.651 Sum_probs=268.3
Q ss_pred ccceEEEEcCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCccCCC
Q 007805 307 GVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFK 386 (589)
Q Consensus 307 ~~~kI~IIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~ 386 (589)
.|++|+|||+|.||++||..++..|++|+++|++++.++++...+.+.+.+.+++|++++++.+..+++++.++++.+++
T Consensus 2 ~i~kv~ViGaG~MG~gIA~~~A~~G~~V~l~D~~~~~~~~~~~~i~~~l~k~~~~g~l~~~~~~~~l~~i~~~~~~~~l~ 81 (307)
T COG1250 2 EIKKVAVIGAGVMGAGIAAVFALAGYDVVLKDISPEALERALAYIEKNLEKLVEKGKLTEEEADAALARITPTTDLAALK 81 (307)
T ss_pred CccEEEEEcccchhHHHHHHHhhcCCceEEEeCCHHHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHhhccccCchhHhc
Confidence 58999999999999999999999889999999999999999999999999999999999999999999999999999999
Q ss_pred CCCEEEEeccCChHHHHHHHHHHHHhCCCCcEEEecCCCCCHHHHhcccCCCCcEEEecCCCCCCCCCeeeEecCCCCCH
Q 007805 387 DVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSA 466 (589)
Q Consensus 387 ~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~~~~~~~~~~~r~ig~h~~~p~~~~~lveiv~~~~t~~ 466 (589)
+||+|||||||++++|+++|++++.++++++|++||||+++++++++.+.+|+||+|+|||||++.|++||++++..|++
T Consensus 82 ~~DlVIEAv~E~levK~~vf~~l~~~~~~~aIlASNTSsl~it~ia~~~~rper~iG~HFfNP~~~m~LVEvI~g~~T~~ 161 (307)
T COG1250 82 DADLVIEAVVEDLELKKQVFAELEALAKPDAILASNTSSLSITELAEALKRPERFIGLHFFNPVPLMPLVEVIRGEKTSD 161 (307)
T ss_pred cCCEEEEeccccHHHHHHHHHHHHhhcCCCcEEeeccCCCCHHHHHHHhCCchhEEEEeccCCCCcceeEEEecCCCCCH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCCeeEEEcCCCCcccccccHHHHHHHHHHHHcCC-CHHHHHHHH-HhcCCCCcHHHHHHHhchHHHH
Q 007805 467 QVILDLMTVGKIIKKVPVVVGNCTGFAVNRAFFPYSQSARLLVSLGV-DVFRIDSAI-RSFGLPIGPFQLLDLAGYGVAA 544 (589)
Q Consensus 467 e~~~~~~~l~~~lG~~~v~v~d~~Gfi~nRi~~~~~~Ea~~l~~~Gv-~~~~iD~~~-~~~g~p~Gpf~~~D~~Gld~~~ 544 (589)
++++++.++.+.+||.|++++|.||||+||++.++++||++++++|+ ++++||+++ .++|||||||+++|++|+|+++
T Consensus 162 e~~~~~~~~~~~igK~~vv~~D~pGFi~NRil~~~~~eA~~l~~eGva~~e~ID~~~~~~~G~pmGpf~l~D~~GlD~~~ 241 (307)
T COG1250 162 ETVERVVEFAKKIGKTPVVVKDVPGFIVNRLLAALLNEAIRLLEEGVATPEEIDAAMRQGLGLPMGPFELADLIGLDVML 241 (307)
T ss_pred HHHHHHHHHHHHcCCCCEeecCCCceehHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHhccCCCccHHHHHHHHhHHHHH
Confidence 99999999999999999888999999999999999999999999996 999999999 7899999999999999999999
Q ss_pred HHHHHHHHhCCCC-CC-chHHHHHHHHcCCCCc---ccceeeCC
Q 007805 545 ATSKEFDKAFPDR-SF-QSPLVDLLLKSGRNGN---KGFSFLFV 583 (589)
Q Consensus 545 ~~~~~l~~~~~~~-~~-~~~~l~~~v~~g~~G~---~Gfy~y~~ 583 (589)
++++.+++.++++ .+ |++++++|++.|++|+ +|||+|+.
T Consensus 242 ~i~~~~~~~~~~~~~~~~~~~~~~~v~~g~lG~Ksg~GfY~y~~ 285 (307)
T COG1250 242 HIMKVLNETLGDDPYYRPPPLLRKLVEAGRLGRKSGKGFYDYRG 285 (307)
T ss_pred HHHHHHHHhcCCCccccccHHHHHHHhcccccccCCCcceeccc
Confidence 9999999988843 33 7899999999999999 99999984
No 7
>KOG2304 consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid transport and metabolism]
Probab=100.00 E-value=5.9e-64 Score=458.60 Aligned_cols=278 Identities=32% Similarity=0.543 Sum_probs=265.2
Q ss_pred CCccceEEEEcCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHH-----HHHHhhccccc
Q 007805 305 PRGVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDK-----ANNALKMLKGV 379 (589)
Q Consensus 305 ~~~~~kI~IIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~-----~~~~~~~i~~~ 379 (589)
...+++|+|||+|.||++||+..+.+|++|+++|.|++.+.++.+.|.+.+.+..+++..+... .+..+++|..+
T Consensus 8 ~~~~~~V~ivGaG~MGSGIAQv~a~sg~~V~l~d~~~~aL~~A~~~I~~sl~rvakKk~~~~~~~~~e~v~~~l~ri~~~ 87 (298)
T KOG2304|consen 8 MAEIKNVAIVGAGQMGSGIAQVAATSGLNVWLVDANEDALSRATKAISSSLKRVAKKKKADDPVALEEFVDDTLDRIKTS 87 (298)
T ss_pred cccccceEEEcccccchhHHHHHHhcCCceEEecCCHHHHHHHHHHHHHHHHHHHhhcccCChhhHHHHHHHHHHHHHHc
Confidence 3468899999999999999999999999999999999999999999999999999988876444 36778999999
Q ss_pred CCc-cCCCCCCEEEEeccCChHHHHHHHHHHHHhCCCCcEEEecCCCCCHHHHhcccCCCCcEEEecCCCCCCCCCeeeE
Q 007805 380 LDY-SEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEI 458 (589)
Q Consensus 380 ~~~-~~~~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~~~~~~~~~~~r~ig~h~~~p~~~~~lvei 458 (589)
+|. ++++++|+||||+.|+.++|+.+|++|+..+++++|++||||++.+++++...++|.||.|+|||||+.+|+++|+
T Consensus 88 tnv~~~v~dadliiEAivEn~diK~~lF~~l~~~ak~~~il~tNTSSl~lt~ia~~~~~~srf~GlHFfNPvPvMKLvEV 167 (298)
T KOG2304|consen 88 TNVSDAVSDADLIIEAIVENLDIKRKLFKDLDKIAKSSTILATNTSSLSLTDIASATQRPSRFAGLHFFNPVPVMKLVEV 167 (298)
T ss_pred CCHHHhhhhhHHHHHHHHHhHHHHHHHHHHHHhhcccceEEeecccceeHHHHHhhccChhhhceeeccCCchhHHHhhh
Confidence 998 7789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCCCHHHHHHHHHHHHHcCCeeEEEcCCCCcccccccHHHHHHHHHHHHcCC-CHHHHHHHH-HhcCCCCcHHHHHH
Q 007805 459 VRTERTSAQVILDLMTVGKIIKKVPVVVGNCTGFAVNRAFFPYSQSARLLVSLGV-DVFRIDSAI-RSFGLPIGPFQLLD 536 (589)
Q Consensus 459 v~~~~t~~e~~~~~~~l~~~lG~~~v~v~d~~Gfi~nRi~~~~~~Ea~~l~~~Gv-~~~~iD~~~-~~~g~p~Gpf~~~D 536 (589)
++++.|++|+++.+..+.+.+||++|-++|.||||+||++.+|++||++++|.|. +-+|||.+| .|.|+||||||+.|
T Consensus 168 ir~~~TS~eTf~~l~~f~k~~gKttVackDtpGFIVNRlLiPyl~ea~r~yerGdAskeDIDtaMklGagyPMGPfEL~D 247 (298)
T KOG2304|consen 168 IRTDDTSDETFNALVDFGKAVGKTTVACKDTPGFIVNRLLIPYLMEAIRMYERGDASKEDIDTAMKLGAGYPMGPFELAD 247 (298)
T ss_pred hcCCCCCHHHHHHHHHHHHHhCCCceeecCCCchhhhHHHHHHHHHHHHHHHhcCCcHhhHHHHHhccCCCCCChHHHHH
Confidence 9999999999999999999999999999999999999999999999999999997 999999999 89999999999999
Q ss_pred HhchHHHHHHHHHHHHhCCCC--CCchHHHHHHHHcCCCCc---ccceeeC
Q 007805 537 LAGYGVAAATSKEFDKAFPDR--SFQSPLVDLLLKSGRNGN---KGFSFLF 582 (589)
Q Consensus 537 ~~Gld~~~~~~~~l~~~~~~~--~~~~~~l~~~v~~g~~G~---~Gfy~y~ 582 (589)
.+|||++..+++.|++.++++ +.|+|++.++|++|++|| +|||+|.
T Consensus 248 yvGLDt~kfvmdgwhe~~pe~~~f~psPll~klVaegklGrKtg~GfY~Yk 298 (298)
T KOG2304|consen 248 YVGLDTCKFVMDGWHEGYPEDSLFAPSPLLDKLVAEGKLGRKTGEGFYKYK 298 (298)
T ss_pred HhhHHHHHHHHHHHHhcCCcccccCCChHHHHHHhccccccccCccceecC
Confidence 999999999999999999775 349999999999999999 9999994
No 8
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=100.00 E-value=2.3e-59 Score=473.12 Aligned_cols=276 Identities=33% Similarity=0.525 Sum_probs=267.1
Q ss_pred CccceEEEEcCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCccCC
Q 007805 306 RGVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEF 385 (589)
Q Consensus 306 ~~~~kI~IIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~ 385 (589)
+.+++|+|||+|.||.+||..++.+|++|++||++++.++++.+++++.+++++++|.+++.+.+..+++++.+++++++
T Consensus 3 ~~~~~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~ 82 (286)
T PRK07819 3 DAIQRVGVVGAGQMGAGIAEVCARAGVDVLVFETTEELATAGRNRIEKSLERAVSRGKLTERERDAALARLRFTTDLGDF 82 (286)
T ss_pred CCccEEEEEcccHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHHHHHHHHhcccCChhhHHHHHhCeEeeCCHHHh
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999999999889
Q ss_pred CCCCEEEEeccCChHHHHHHHHHHHHhC-CCCcEEEecCCCCCHHHHhcccCCCCcEEEecCCCCCCCCCeeeEecCCCC
Q 007805 386 KDVDMVIEAVIESVPLKQKIFSELEKAC-PPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERT 464 (589)
Q Consensus 386 ~~aDlVIeavpe~~~~k~~v~~~l~~~~-~~~~ii~s~ts~~~~~~~~~~~~~~~r~ig~h~~~p~~~~~lveiv~~~~t 464 (589)
++||+|||||||+.++|+++|.++++++ ++++||+||||++++++++....+|+|++|+|||+|++.++++||+++..|
T Consensus 83 ~~~d~ViEav~E~~~~K~~l~~~l~~~~~~~~~il~snTS~~~~~~la~~~~~~~r~~g~hf~~P~~~~~lvElv~~~~T 162 (286)
T PRK07819 83 ADRQLVIEAVVEDEAVKTEIFAELDKVVTDPDAVLASNTSSIPIMKLAAATKRPGRVLGLHFFNPVPVLPLVELVPTLVT 162 (286)
T ss_pred CCCCEEEEecccCHHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHHHHhhcCCCccEEEEecCCCcccCceEEEeCCCCC
Confidence 9999999999999999999999999999 899999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHH-HcCCeeEEEcCCCCcccccccHHHHHHHHHHHHcCC-CHHHHHHHH-HhcCCCCcHHHHHHHhchH
Q 007805 465 SAQVILDLMTVGK-IIKKVPVVVGNCTGFAVNRAFFPYSQSARLLVSLGV-DVFRIDSAI-RSFGLPIGPFQLLDLAGYG 541 (589)
Q Consensus 465 ~~e~~~~~~~l~~-~lG~~~v~v~d~~Gfi~nRi~~~~~~Ea~~l~~~Gv-~~~~iD~~~-~~~g~p~Gpf~~~D~~Gld 541 (589)
++++++++.+++. .+||.|++++|.|||++||++.+++|||++|+++|+ +++|||+++ .++|||+|||+++|.+|+|
T Consensus 163 ~~~~~~~~~~~~~~~lgk~pv~v~d~pGfi~nRi~~~~~~Ea~~ll~eGv~~~~dID~~~~~g~G~p~Gpf~~~D~~Gld 242 (286)
T PRK07819 163 SEATVARAEEFASDVLGKQVVRAQDRSGFVVNALLVPYLLSAIRMVESGFATAEDIDKAMVLGCAHPMGPLRLSDLVGLD 242 (286)
T ss_pred CHHHHHHHHHHHHHhCCCCceEecCCCChHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHhCCCCCCCHHHHHHHhccH
Confidence 9999999999988 599999999999999999999999999999999997 999999999 8999999999999999999
Q ss_pred HHHHHHHHHHHhCCCCC-CchHHHHHHHHcCCCCc---ccceee
Q 007805 542 VAAATSKEFDKAFPDRS-FQSPLVDLLLKSGRNGN---KGFSFL 581 (589)
Q Consensus 542 ~~~~~~~~l~~~~~~~~-~~~~~l~~~v~~g~~G~---~Gfy~y 581 (589)
+++++++.+++.+++++ .|++++++|+++|++|+ +|||+|
T Consensus 243 ~~~~~~~~l~~~~~~~~~~p~~~l~~~v~~g~~G~k~g~GfY~y 286 (286)
T PRK07819 243 TVKAIADSMYEEFKEPLYAPPPLLLRMVEAGLLGKKSGRGFYTY 286 (286)
T ss_pred HHHHHHHHHHHHcCCCCCCCCHHHHHHHHCCCCcccCCCEeccC
Confidence 99999999999998754 58999999999999999 999998
No 9
>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC. This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.
Probab=100.00 E-value=3.5e-56 Score=479.72 Aligned_cols=279 Identities=36% Similarity=0.522 Sum_probs=267.1
Q ss_pred ccceEEEEcCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCccCCC
Q 007805 307 GVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFK 386 (589)
Q Consensus 307 ~~~kI~IIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~ 386 (589)
+++||+|||+|+||++||..++++|++|++||++++.++++.+++++.+++++++|.+++++.+..+++++.++++++++
T Consensus 4 ~~~kV~VIGaG~MG~gIA~~la~aG~~V~l~d~~~e~l~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~~~~~~l~ 83 (503)
T TIGR02279 4 NVVTVAVIGAGAMGAGIAQVAASAGHQVLLYDIRAEALARAIAGIEARLNSLVTKGKLTAEECERTLKRLIPVTDLHALA 83 (503)
T ss_pred CccEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHhccEEeCCHHHhC
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999998889
Q ss_pred CCCEEEEeccCChHHHHHHHHHHHHhCCCCcEEEecCCCCCHHHHhcccCCCCcEEEecCCCCCCCCCeeeEecCCCCCH
Q 007805 387 DVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSA 466 (589)
Q Consensus 387 ~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~~~~~~~~~~~r~ig~h~~~p~~~~~lveiv~~~~t~~ 466 (589)
+||+|||||||+.++|+++|.++.+++++++||+||||++++++++..+.+|.|++|+|||+|++.++++|+++++.|++
T Consensus 84 ~aDlVIEav~E~~~vK~~vf~~l~~~~~~~~IlasnTStl~i~~iA~~~~~p~r~~G~HFf~Papv~~LvEvv~g~~Ts~ 163 (503)
T TIGR02279 84 DAGLVIEAIVENLEVKKALFAQLEELCPADTIIASNTSSLSITAIAAGLARPERVAGLHFFNPAPVMALVEVVSGLATAA 163 (503)
T ss_pred CCCEEEEcCcCcHHHHHHHHHHHHhhCCCCeEEEECCCCCCHHHHHHhcCcccceEEEeccCccccCceEEEeCCCCCCH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCCeeEEEcCCCCcccccccHHHHHHHHHHHHcCC-CHHHHHHHH-HhcCCCCcHHHHHHHhchHHHH
Q 007805 467 QVILDLMTVGKIIKKVPVVVGNCTGFAVNRAFFPYSQSARLLVSLGV-DVFRIDSAI-RSFGLPIGPFQLLDLAGYGVAA 544 (589)
Q Consensus 467 e~~~~~~~l~~~lG~~~v~v~d~~Gfi~nRi~~~~~~Ea~~l~~~Gv-~~~~iD~~~-~~~g~p~Gpf~~~D~~Gld~~~ 544 (589)
++++.+.++++.+||.|++++|.|||++||++.++++||++++++|. ++++||+++ .++|||||||+++|++|||+.+
T Consensus 164 e~~~~~~~l~~~lgk~pv~v~d~pGfi~Nrl~~~~~~EA~~l~e~g~a~~~~ID~al~~~~G~~mGPf~l~D~~Gldv~~ 243 (503)
T TIGR02279 164 EVAEQLYETALAWGKQPVHCHSTPGFIVNRVARPYYAEALRALEEQVAAPAVLDAALRDGAGFPMGPFELTDLIGHDVNF 243 (503)
T ss_pred HHHHHHHHHHHHcCCeeeEeCCCCCcHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHhcCCCCcCHHHHHHHhhhHHHH
Confidence 99999999999999999999999999999999999999999999985 999999999 7899999999999999999999
Q ss_pred HHHHHHHHhC-CCC-CCchHHHHHHHHcCCCCc---ccceeeCCCc
Q 007805 545 ATSKEFDKAF-PDR-SFQSPLVDLLLKSGRNGN---KGFSFLFVFS 585 (589)
Q Consensus 545 ~~~~~l~~~~-~~~-~~~~~~l~~~v~~g~~G~---~Gfy~y~~~~ 585 (589)
++.+++++.+ +++ +.|++++++|+++|++|+ +|||+|+.++
T Consensus 244 ~v~~~~~~~~~~~~~~~p~~~~~~~v~~G~lG~KtG~GfY~y~~~~ 289 (503)
T TIGR02279 244 AVTCSVFNAFWQDRRFLPSLVQQELVIAGRLGRKSGLGVYDYREEA 289 (503)
T ss_pred HHHHHHHHHhcCCCCCCCcHHHHHHHHCCCCccccCCEeeeCCCCC
Confidence 9999998874 554 447899999999999999 9999998653
No 10
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=100.00 E-value=1.1e-55 Score=448.55 Aligned_cols=276 Identities=28% Similarity=0.412 Sum_probs=262.3
Q ss_pred ccceEEEEcCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHH-HHHHhhcccccCCc-cC
Q 007805 307 GVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDK-ANNALKMLKGVLDY-SE 384 (589)
Q Consensus 307 ~~~kI~IIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~-~~~~~~~i~~~~~~-~~ 384 (589)
.++||+|||+|.||++||..++.+|++|++||++++.++++.+.+++.+....+.+.++..+ .+....+++.++++ ++
T Consensus 2 ~~~kIaViGaG~mG~~iA~~la~~G~~V~l~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~d~~~a 81 (287)
T PRK08293 2 DIKNVTVAGAGVLGSQIAFQTAFHGFDVTIYDISDEALEKAKERIAKLADRYVRDLEATKEAPAEAALNRITLTTDLAEA 81 (287)
T ss_pred CccEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhHHHHHcCeEEeCCHHHH
Confidence 47899999999999999999999999999999999999999999988889999998888776 66667889999998 57
Q ss_pred CCCCCEEEEeccCChHHHHHHHHHHHHhCCCCcEEEecCCCCCHHHHhcccCCCCcEEEecCCCCCCCCCeeeEecCCCC
Q 007805 385 FKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERT 464 (589)
Q Consensus 385 ~~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~~~~~~~~~~~r~ig~h~~~p~~~~~lveiv~~~~t 464 (589)
+++||+||+|+||+.++|+++++++.+.+++++||+||+|+++++++.+.+.+++||+|+|||+|++.++++|+++++.|
T Consensus 82 ~~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~sntSt~~~~~~~~~~~~~~r~vg~Hf~~p~~~~~lvevv~~~~t 161 (287)
T PRK08293 82 VKDADLVIEAVPEDPEIKGDFYEELAKVAPEKTIFATNSSTLLPSQFAEATGRPEKFLALHFANEIWKNNTAEIMGHPGT 161 (287)
T ss_pred hcCCCEEEEeccCCHHHHHHHHHHHHhhCCCCCEEEECcccCCHHHHHhhcCCcccEEEEcCCCCCCcCCeEEEeCCCCC
Confidence 89999999999999999999999999999999999999999999999998889999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHcCCeeEEE-cCCCCcccccccHHHHHHHHHHHHcCC-CHHHHHHHH-HhcCCCCcHHHHHHHhchH
Q 007805 465 SAQVILDLMTVGKIIKKVPVVV-GNCTGFAVNRAFFPYSQSARLLVSLGV-DVFRIDSAI-RSFGLPIGPFQLLDLAGYG 541 (589)
Q Consensus 465 ~~e~~~~~~~l~~~lG~~~v~v-~d~~Gfi~nRi~~~~~~Ea~~l~~~Gv-~~~~iD~~~-~~~g~p~Gpf~~~D~~Gld 541 (589)
++++++.+.++++.+|+.|+++ +|.|||++||++.++++||++++++|+ +++|||+++ .++|+|+|||+++|.+|||
T Consensus 162 ~~~~~~~~~~~~~~~Gk~pv~v~~d~pgfi~nRi~~~~~~ea~~l~~~g~a~~~~iD~a~~~~~g~~~Gp~~~~D~~Gld 241 (287)
T PRK08293 162 DPEVFDTVVAFAKAIGMVPIVLKKEQPGYILNSLLVPFLSAALALWAKGVADPETIDKTWMIATGAPMGPFGILDIVGLD 241 (287)
T ss_pred CHHHHHHHHHHHHHcCCeEEEecCCCCCHhHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHhccCCCcCHHHHHHHhchH
Confidence 9999999999999999999999 699999999999999999999999997 999999999 8999999999999999999
Q ss_pred HHHHHHHHHHHhCCCCCC--chHHHHHHHHcCCCCc---ccceeeC
Q 007805 542 VAAATSKEFDKAFPDRSF--QSPLVDLLLKSGRNGN---KGFSFLF 582 (589)
Q Consensus 542 ~~~~~~~~l~~~~~~~~~--~~~~l~~~v~~g~~G~---~Gfy~y~ 582 (589)
+++++++++++.++++++ |++++++||++|++|+ +|||+|+
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~v~~g~~G~k~g~Gfy~y~ 287 (287)
T PRK08293 242 TAYNITSNWAEATDDENAKKAAALLKEYIDKGKLGVATGEGFYNYP 287 (287)
T ss_pred HHHHHHHHHHHHhCCcccccchHHHHHHHHCCCCcccCCCccccCc
Confidence 999999999999988753 8899999999999999 9999995
No 11
>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated
Probab=100.00 E-value=1.1e-54 Score=469.79 Aligned_cols=279 Identities=34% Similarity=0.526 Sum_probs=267.2
Q ss_pred CccceEEEEcCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCccCC
Q 007805 306 RGVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEF 385 (589)
Q Consensus 306 ~~~~kI~IIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~ 385 (589)
+++++|+|||+|.||++||..++++|++|++||++++.++++.+++++.+++++++|.+++++.+..+++++.+++++.+
T Consensus 5 ~~i~~V~VIGaG~MG~gIA~~la~aG~~V~l~D~~~e~l~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~~~~~~~ 84 (507)
T PRK08268 5 PSIATVAVIGAGAMGAGIAQVAAQAGHTVLLYDARAGAAAAARDGIAARLAKLVEKGKLTAEQADAALARLRPVEALADL 84 (507)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCCHHHh
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999888
Q ss_pred CCCCEEEEeccCChHHHHHHHHHHHHhCCCCcEEEecCCCCCHHHHhcccCCCCcEEEecCCCCCCCCCeeeEecCCCCC
Q 007805 386 KDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTS 465 (589)
Q Consensus 386 ~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~~~~~~~~~~~r~ig~h~~~p~~~~~lveiv~~~~t~ 465 (589)
++||+|||||||+.++|+.+|++++..+++++|++||||++++++++..+.+|+|++|+|||+|++.++++|+++++.|+
T Consensus 85 ~~aDlViEav~E~~~vK~~vf~~l~~~~~~~ailasntStl~i~~la~~~~~p~r~~G~hff~Pa~v~~LvEvv~g~~Ts 164 (507)
T PRK08268 85 ADCDLVVEAIVERLDVKQALFAQLEAIVSPDCILATNTSSLSITAIAAALKHPERVAGLHFFNPVPLMKLVEVVSGLATD 164 (507)
T ss_pred CCCCEEEEcCcccHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHHHHhhcCCcccEEEEeecCCcccCeeEEEeCCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHcCCeeEEEcCCCCcccccccHHHHHHHHHHHHcCC-CHHHHHHHH-HhcCCCCcHHHHHHHhchHHH
Q 007805 466 AQVILDLMTVGKIIKKVPVVVGNCTGFAVNRAFFPYSQSARLLVSLGV-DVFRIDSAI-RSFGLPIGPFQLLDLAGYGVA 543 (589)
Q Consensus 466 ~e~~~~~~~l~~~lG~~~v~v~d~~Gfi~nRi~~~~~~Ea~~l~~~Gv-~~~~iD~~~-~~~g~p~Gpf~~~D~~Gld~~ 543 (589)
+++++.+.++++.+||.|++++|.|||++||++.++++||++++++|. ++++||+++ .++|||||||+++|++|+|+.
T Consensus 165 ~~~~~~~~~l~~~lgk~pv~v~d~pGfi~Nrll~~~~~Ea~~l~~~g~~~~~~iD~al~~~~G~~mGPf~l~D~~Gldv~ 244 (507)
T PRK08268 165 PAVADALYALARAWGKTPVRAKDTPGFIVNRAARPYYTEALRVLEEGVADPATIDAILREAAGFRMGPFELMDLIGLDVN 244 (507)
T ss_pred HHHHHHHHHHHHHcCCceEEecCCCChHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHhcCCCCcCHHHHHHHhchHHH
Confidence 999999999999999999999999999999999999999999999985 999999999 789999999999999999999
Q ss_pred HHHHHHHHHhC-CC-CCCchHHHHHHHHcCCCCc---ccceeeCCC
Q 007805 544 AATSKEFDKAF-PD-RSFQSPLVDLLLKSGRNGN---KGFSFLFVF 584 (589)
Q Consensus 544 ~~~~~~l~~~~-~~-~~~~~~~l~~~v~~g~~G~---~Gfy~y~~~ 584 (589)
+++.+.+++.+ ++ ++.|++++++|+++|++|+ +|||+|+.+
T Consensus 245 ~~v~~~~~~~~~~~~~~~~~~~~~~lv~~g~lG~ksG~GfY~y~~~ 290 (507)
T PRK08268 245 HAVMESVYRQFYQEPRFRPSLIQQELVAAGRLGRKSGQGFYRYADG 290 (507)
T ss_pred HHHHHHHHHHhcCCCcCCccHHHHHHHHCCCCccccCCeeeECCCC
Confidence 99999998875 34 4557899999999999999 999999755
No 12
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=100.00 E-value=1.9e-54 Score=440.04 Aligned_cols=278 Identities=31% Similarity=0.470 Sum_probs=265.5
Q ss_pred cceEEEEcCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cCCC
Q 007805 308 VRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFK 386 (589)
Q Consensus 308 ~~kI~IIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~ 386 (589)
+++|+|||+|.||.+||..++++|++|++||++++.++++.+++...+...++.|.+++.+.+....+++.++++ +.++
T Consensus 1 ~~~V~VIG~G~mG~~iA~~la~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~ 80 (288)
T PRK09260 1 IEKLVVVGAGVMGRGIAYVFAVSGFQTTLVDIKQEQLESAQQEIASIFEQGVARGKLTEAARQAALARLSYSLDLKAAVA 80 (288)
T ss_pred CcEEEEECccHHHHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCcHHHhhc
Confidence 578999999999999999999999999999999999999988888888888889999988888888889988888 6799
Q ss_pred CCCEEEEeccCChHHHHHHHHHHHHhCCCCcEEEecCCCCCHHHHhcccCCCCcEEEecCCCCCCCCCeeeEecCCCCCH
Q 007805 387 DVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSA 466 (589)
Q Consensus 387 ~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~~~~~~~~~~~r~ig~h~~~p~~~~~lveiv~~~~t~~ 466 (589)
+||+||+|+|++.++|+.++.++.+++++++|+++|+|+++++++++.+.++.|++|+||++|++.++++|+++++.|++
T Consensus 81 ~aD~Vi~avpe~~~~k~~~~~~l~~~~~~~~il~~~tSt~~~~~l~~~~~~~~r~~g~h~~~Pv~~~~Lve~v~g~~t~~ 160 (288)
T PRK09260 81 DADLVIEAVPEKLELKKAVFETADAHAPAECYIATNTSTMSPTEIASFTKRPERVIAMHFFNPVHKMKLVELIRGLETSD 160 (288)
T ss_pred CCCEEEEeccCCHHHHHHHHHHHHhhCCCCcEEEEcCCCCCHHHHHhhcCCcccEEEEecCCCcccCceEEEeCCCCCCH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCCeeEEEcCCCCcccccccHHHHHHHHHHHHcCC-CHHHHHHHH-HhcCCCCcHHHHHHHhchHHHH
Q 007805 467 QVILDLMTVGKIIKKVPVVVGNCTGFAVNRAFFPYSQSARLLVSLGV-DVFRIDSAI-RSFGLPIGPFQLLDLAGYGVAA 544 (589)
Q Consensus 467 e~~~~~~~l~~~lG~~~v~v~d~~Gfi~nRi~~~~~~Ea~~l~~~Gv-~~~~iD~~~-~~~g~p~Gpf~~~D~~Gld~~~ 544 (589)
++++.++++++.+|+.|++++|.|||++||++.+++|||++++++|+ +++|||.++ .++|||+|||+++|.+|+|++.
T Consensus 161 ~~~~~~~~~l~~lg~~~v~v~d~~Gf~~nRl~~~~~~ea~~~~~~gv~~~~~iD~~~~~g~g~p~Gp~~~~D~~Gl~~~~ 240 (288)
T PRK09260 161 ETVQVAKEVAEQMGKETVVVNEFPGFVTSRISALVGNEAFYMLQEGVATAEDIDKAIRLGLNFPMGPLELGDLVGLDTRL 240 (288)
T ss_pred HHHHHHHHHHHHcCCeEEEecCcccHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHhCCCCCCCHHHHHHHhhHHHHH
Confidence 99999999999999999999999999999999999999999999997 999999999 7999999999999999999999
Q ss_pred HHHHHHHHhCCCCCCchHHHHHHHHcCCCCc---ccceeeCCCc
Q 007805 545 ATSKEFDKAFPDRSFQSPLVDLLLKSGRNGN---KGFSFLFVFS 585 (589)
Q Consensus 545 ~~~~~l~~~~~~~~~~~~~l~~~v~~g~~G~---~Gfy~y~~~~ 585 (589)
++.+.+++.+++++.|++++.+|+++|++|+ +|||+|+++.
T Consensus 241 ~~~~~l~~~~~~~~~~~~~l~~~~~~g~~G~k~g~Gfy~y~~~~ 284 (288)
T PRK09260 241 NNLKYLHETLGEKYRPAPLLEKYVKAGRLGRKTGRGVYDYTNRE 284 (288)
T ss_pred HHHHHHHHHhCCCCCCCHHHHHHHHCCCCccccCCEEEECCCCC
Confidence 9999999999887779999999999999999 9999998753
No 13
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=100.00 E-value=1.4e-54 Score=439.84 Aligned_cols=275 Identities=36% Similarity=0.582 Sum_probs=264.2
Q ss_pred ccceEEEEcCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCccCCC
Q 007805 307 GVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFK 386 (589)
Q Consensus 307 ~~~kI~IIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~ 386 (589)
.|+||+|||+|.||++||..++++|++|++||++++.++++.+++++.++...+.|.++..+.+....+++.+++++.++
T Consensus 2 ~~~kI~VIG~G~mG~~ia~~la~~g~~V~~~d~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~ 81 (282)
T PRK05808 2 GIQKIGVIGAGTMGNGIAQVCAVAGYDVVMVDISDAAVDRGLATITKSLDRLVKKGKMTEADKEAALARITGTTDLDDLK 81 (282)
T ss_pred CccEEEEEccCHHHHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCCHHHhc
Confidence 47899999999999999999999999999999999999999999999999999999999888888888898888887789
Q ss_pred CCCEEEEeccCChHHHHHHHHHHHHhCCCCcEEEecCCCCCHHHHhcccCCCCcEEEecCCCCCCCCCeeeEecCCCCCH
Q 007805 387 DVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSA 466 (589)
Q Consensus 387 ~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~~~~~~~~~~~r~ig~h~~~p~~~~~lveiv~~~~t~~ 466 (589)
+||+||||+||++++|+++++++.++++++++|+|+||+++++.+++.++++.|++++||++|++.++++|+++++.|++
T Consensus 82 ~aDlVi~av~e~~~~k~~~~~~l~~~~~~~~il~s~ts~~~~~~la~~~~~~~r~ig~h~~~P~~~~~~vev~~g~~t~~ 161 (282)
T PRK05808 82 DADLVIEAATENMDLKKKIFAQLDEIAKPEAILATNTSSLSITELAAATKRPDKVIGMHFFNPVPVMKLVEIIRGLATSD 161 (282)
T ss_pred cCCeeeecccccHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHHHHHhhCCCcceEEeeccCCcccCccEEEeCCCCCCH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCCeeEEEcCCCCcccccccHHHHHHHHHHHHcCC-CHHHHHHHH-HhcCCCCcHHHHHHHhchHHHH
Q 007805 467 QVILDLMTVGKIIKKVPVVVGNCTGFAVNRAFFPYSQSARLLVSLGV-DVFRIDSAI-RSFGLPIGPFQLLDLAGYGVAA 544 (589)
Q Consensus 467 e~~~~~~~l~~~lG~~~v~v~d~~Gfi~nRi~~~~~~Ea~~l~~~Gv-~~~~iD~~~-~~~g~p~Gpf~~~D~~Gld~~~ 544 (589)
++++.+.++++.+|+.|++++|.|||+.||++.+++|||++++++|+ +|+|||.++ .++|||+|||+++|.+|+|++.
T Consensus 162 e~~~~~~~l~~~lGk~pv~~~d~~g~i~~Ri~~~~~~ea~~~~~~gv~~~~diD~~~~~g~g~p~Gp~~~~D~~Gl~~~~ 241 (282)
T PRK05808 162 ATHEAVEALAKKIGKTPVEVKNAPGFVVNRILIPMINEAIFVLAEGVATAEDIDEGMKLGCNHPIGPLALADLIGLDTCL 241 (282)
T ss_pred HHHHHHHHHHHHcCCeeEEecCccChHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHhCCCCCCCHHHHHHHhhhHHHH
Confidence 99999999999999999999999999999999999999999999997 999999999 8999999999999999999999
Q ss_pred HHHHHHHHhCCCCC-CchHHHHHHHHcCCCCc---ccceee
Q 007805 545 ATSKEFDKAFPDRS-FQSPLVDLLLKSGRNGN---KGFSFL 581 (589)
Q Consensus 545 ~~~~~l~~~~~~~~-~~~~~l~~~v~~g~~G~---~Gfy~y 581 (589)
++++.+++.++++. .|++++++|+++|++|+ +|||+|
T Consensus 242 ~~~~~l~~~~~~~~~~~~~~l~~~~~~g~~G~k~g~Gfy~y 282 (282)
T PRK05808 242 AIMEVLYEGFGDSKYRPCPLLRKMVAAGWLGRKTGRGFYDY 282 (282)
T ss_pred HHHHHHHHHcCCCcCCCCHHHHHHHHCCCCccccCCcccCC
Confidence 99999999998754 58899999999999999 999998
No 14
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=100.00 E-value=3.1e-54 Score=439.15 Aligned_cols=275 Identities=31% Similarity=0.537 Sum_probs=259.9
Q ss_pred ccceEEEEcCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHHHH---HHHhhHhcCCCCHHHHHHHhhcccccCCcc
Q 007805 307 GVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEA---NVRGLVTRGKLTQDKANNALKMLKGVLDYS 383 (589)
Q Consensus 307 ~~~kI~IIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~---~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~ 383 (589)
++++|+|||+|+||++||..++++|++|++||++++.++++.+++++ .+...++.|.+++.+.+..+.++..+++++
T Consensus 2 ~i~~I~ViGaG~mG~~iA~~la~~G~~V~l~d~~~~~l~~~~~~i~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~ 81 (291)
T PRK06035 2 DIKVIGVVGSGVMGQGIAQVFARTGYDVTIVDVSEEILKNAMELIESGPYGLRNLVEKGKMSEDEAKAIMARIRTSTSYE 81 (291)
T ss_pred CCcEEEEECccHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhhhhhHHHHHHcCCCCHHHHHHHHhCcEeeCCHH
Confidence 47899999999999999999999999999999999999988877766 366778889888888888888888888887
Q ss_pred CCCCCCEEEEeccCChHHHHHHHHHHHHhCCCCcEEEecCCCCCHHHHhcccCCCCcEEEecCCCCCCCCCeeeEecCCC
Q 007805 384 EFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTER 463 (589)
Q Consensus 384 ~~~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~~~~~~~~~~~r~ig~h~~~p~~~~~lveiv~~~~ 463 (589)
++++||+||||+||+.++|+++++++.+++++++||+||||++++++++..+.+++|++|+|||+|++.++++|+++++.
T Consensus 82 ~~~~aDlVieav~e~~~~k~~~~~~l~~~~~~~~il~S~tsg~~~~~la~~~~~~~r~ig~hf~~P~~~~~~vEv~~g~~ 161 (291)
T PRK06035 82 SLSDADFIVEAVPEKLDLKRKVFAELERNVSPETIIASNTSGIMIAEIATALERKDRFIGMHWFNPAPVMKLIEVVRAAL 161 (291)
T ss_pred HhCCCCEEEEcCcCcHHHHHHHHHHHHhhCCCCeEEEEcCCCCCHHHHHhhcCCcccEEEEecCCCcccCccEEEeCCCC
Confidence 88999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHcCCeeEEEcCCCCcccccccHHHHHHHHHHHHcCC-CHHHHHHHH-HhcCCCCcHHHHHHHhchH
Q 007805 464 TSAQVILDLMTVGKIIKKVPVVVGNCTGFAVNRAFFPYSQSARLLVSLGV-DVFRIDSAI-RSFGLPIGPFQLLDLAGYG 541 (589)
Q Consensus 464 t~~e~~~~~~~l~~~lG~~~v~v~d~~Gfi~nRi~~~~~~Ea~~l~~~Gv-~~~~iD~~~-~~~g~p~Gpf~~~D~~Gld 541 (589)
|++++++.+.++++.+|+.|++++|.|||++||++.++++||++++++|+ +++|||+++ .++|+|+|||+++|.+|||
T Consensus 162 T~~e~~~~~~~~~~~lgk~~v~v~d~pgfv~nRl~~~~~~ea~~~~~~g~a~~~~iD~~~~~~~g~~~Gp~~~~D~~Gl~ 241 (291)
T PRK06035 162 TSEETFNTTVELSKKIGKIPIEVADVPGFFTTRFIEGWLLEAIRSFEIGIATIKDIDEMCKLAFGFPMGPFELMDIIGID 241 (291)
T ss_pred CCHHHHHHHHHHHHHcCCeEEEeCCCCCeeHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhhcCCCccCHHHHHHHhhHH
Confidence 99999999999999999999999999999999999999999999999997 999999999 8999999999999999999
Q ss_pred HHHHHHHHHHHhCCCCC-CchHHHHHHHHcCCCCc-c-------cceee
Q 007805 542 VAAATSKEFDKAFPDRS-FQSPLVDLLLKSGRNGN-K-------GFSFL 581 (589)
Q Consensus 542 ~~~~~~~~l~~~~~~~~-~~~~~l~~~v~~g~~G~-~-------Gfy~y 581 (589)
++.++++.+++.+++++ .|+++|++|+++|++|+ . |||+|
T Consensus 242 ~~~~~~~~l~~~~~~~~~~~~~~l~~~v~~g~~G~k~~~~~~g~Gfy~y 290 (291)
T PRK06035 242 TVYHIAEYLYEETGDPQFIPPNSLKQMVLNGYVGDKKVKYGSKGGWFDY 290 (291)
T ss_pred HHHHHHHHHHHHcCCCcCCccHHHHHHHHCCCCcCCCCCCCCCceeeec
Confidence 99999999999998865 48899999999999988 4 89998
No 15
>PLN02545 3-hydroxybutyryl-CoA dehydrogenase
Probab=100.00 E-value=7.7e-54 Score=437.30 Aligned_cols=278 Identities=32% Similarity=0.527 Sum_probs=266.4
Q ss_pred ccceEEEEcCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCccCCC
Q 007805 307 GVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFK 386 (589)
Q Consensus 307 ~~~kI~IIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~ 386 (589)
.++||+|||+|.||.+||..++++|++|++||++++.++.+.+++++.++++++.|.+++.+.+..+++++++++.++++
T Consensus 3 ~~~~V~vIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 82 (295)
T PLN02545 3 EIKKVGVVGAGQMGSGIAQLAAAAGMDVWLLDSDPAALSRGLDSISSSLARLVKKGKMSQEEADATLGRIRCTTNLEELR 82 (295)
T ss_pred CcCEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhceEeeCCHHHhC
Confidence 47899999999999999999999999999999999999999999999999999999999988888888888888888899
Q ss_pred CCCEEEEeccCChHHHHHHHHHHHHhCCCCcEEEecCCCCCHHHHhcccCCCCcEEEecCCCCCCCCCeeeEecCCCCCH
Q 007805 387 DVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSA 466 (589)
Q Consensus 387 ~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~~~~~~~~~~~r~ig~h~~~p~~~~~lveiv~~~~t~~ 466 (589)
+||+|||||||++++|+.+|+++.+++++++||+||||+++++++++.+.++.+++++||++||+.++++|+++++.|++
T Consensus 83 ~aD~Vieav~e~~~~k~~v~~~l~~~~~~~~il~s~tS~i~~~~l~~~~~~~~r~~g~h~~~pp~~~~lveiv~g~~t~~ 162 (295)
T PLN02545 83 DADFIIEAIVESEDLKKKLFSELDRICKPSAILASNTSSISITRLASATQRPQQVIGMHFMNPPPIMKLVEIIRGADTSD 162 (295)
T ss_pred CCCEEEEcCccCHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHHHHhhcCCCcceEEEeccCCcccCceEEEeCCCCCCH
Confidence 99999999999999999999999999999999999999999999999988899999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCCeeEEEcCCCCcccccccHHHHHHHHHHHHcCC-CHHHHHHHH-HhcCCCCcHHHHHHHhchHHHH
Q 007805 467 QVILDLMTVGKIIKKVPVVVGNCTGFAVNRAFFPYSQSARLLVSLGV-DVFRIDSAI-RSFGLPIGPFQLLDLAGYGVAA 544 (589)
Q Consensus 467 e~~~~~~~l~~~lG~~~v~v~d~~Gfi~nRi~~~~~~Ea~~l~~~Gv-~~~~iD~~~-~~~g~p~Gpf~~~D~~Gld~~~ 544 (589)
++++.+.++++.+|+.+++++|.|||++||++.++++||++++++|+ +++|||.++ .++|||+|||+++|.+|+|++.
T Consensus 163 e~~~~~~~ll~~lG~~~~~~~d~~g~i~nri~~~~~~ea~~~~~~gv~~~~~iD~~~~~g~g~~~Gp~~~~D~~Gl~~~~ 242 (295)
T PLN02545 163 EVFDATKALAERFGKTVVCSQDYPGFIVNRILMPMINEAFYALYTGVASKEDIDTGMKLGTNHPMGPLHLADFIGLDTCL 242 (295)
T ss_pred HHHHHHHHHHHHcCCeeEEecCcccHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHhccCCCCCHHHHHHHhchHHHH
Confidence 99999999999999999999999999999999999999999999997 999999999 8999999999999999999999
Q ss_pred HHHHHHHHhCCCCC-CchHHHHHHHHcCCCCc---ccceeeCCC
Q 007805 545 ATSKEFDKAFPDRS-FQSPLVDLLLKSGRNGN---KGFSFLFVF 584 (589)
Q Consensus 545 ~~~~~l~~~~~~~~-~~~~~l~~~v~~g~~G~---~Gfy~y~~~ 584 (589)
++++.+++.+++++ .|++++++|+++|++|+ +|||+|+++
T Consensus 243 ~~~~~l~~~~~~~~~~~~~~l~~~~~~g~~G~k~g~Gfy~y~~~ 286 (295)
T PLN02545 243 SIMKVLHEGLGDSKYRPCPLLVQYVDAGRLGRKSGRGVYHYDGK 286 (295)
T ss_pred HHHHHHHHHcCCCcCCCCHHHHHHHHCCCCcccCCCeeeECCCC
Confidence 99999999998754 58999999999999999 999999864
No 16
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=100.00 E-value=1.9e-53 Score=433.80 Aligned_cols=279 Identities=31% Similarity=0.475 Sum_probs=265.0
Q ss_pred CccceEEEEcCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCccCC
Q 007805 306 RGVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEF 385 (589)
Q Consensus 306 ~~~~kI~IIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~ 385 (589)
++++||+|||+|.||.+||..++++|++|++||++++.++++.++++..+...++.|.++..+.+..+.+++.+++++.+
T Consensus 2 ~~~~kI~vIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~ 81 (292)
T PRK07530 2 MAIKKVGVIGAGQMGNGIAHVCALAGYDVLLNDVSADRLEAGLATINGNLARQVAKGKISEEARAAALARISTATDLEDL 81 (292)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEeeCCHHHh
Confidence 45789999999999999999999999999999999999999989899999989999999888877778889988888889
Q ss_pred CCCCEEEEeccCChHHHHHHHHHHHHhCCCCcEEEecCCCCCHHHHhcccCCCCcEEEecCCCCCCCCCeeeEecCCCCC
Q 007805 386 KDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTS 465 (589)
Q Consensus 386 ~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~~~~~~~~~~~r~ig~h~~~p~~~~~lveiv~~~~t~ 465 (589)
++||+||+||||+.++|+.+++++.+.++++++|+||||+++++.+++.+.+++|++|+||++|++.++++|++++..|+
T Consensus 82 ~~aD~Vieavpe~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~s~la~~~~~~~r~~g~h~~~p~~~~~~vei~~g~~t~ 161 (292)
T PRK07530 82 ADCDLVIEAATEDETVKRKIFAQLCPVLKPEAILATNTSSISITRLASATDRPERFIGIHFMNPVPVMKLVELIRGIATD 161 (292)
T ss_pred cCCCEEEEcCcCCHHHHHHHHHHHHhhCCCCcEEEEcCCCCCHHHHHhhcCCcccEEEeeccCCcccCceEEEeCCCCCC
Confidence 99999999999999999999999999999999999999999999999988889999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHcCCeeEEEcCCCCcccccccHHHHHHHHHHHHcCC-CHHHHHHHH-HhcCCCCcHHHHHHHhchHHH
Q 007805 466 AQVILDLMTVGKIIKKVPVVVGNCTGFAVNRAFFPYSQSARLLVSLGV-DVFRIDSAI-RSFGLPIGPFQLLDLAGYGVA 543 (589)
Q Consensus 466 ~e~~~~~~~l~~~lG~~~v~v~d~~Gfi~nRi~~~~~~Ea~~l~~~Gv-~~~~iD~~~-~~~g~p~Gpf~~~D~~Gld~~ 543 (589)
+++++.+.++++.+|+.+++++|.|||++||++.++++|+++++++|+ ++++||.++ .++|||+|||+++|.+|+|++
T Consensus 162 ~~~~~~~~~~~~~~gk~~v~~~d~pg~i~nRl~~~~~~ea~~~~~~g~~~~~~iD~~~~~g~g~~~GP~~~~D~~Gl~~~ 241 (292)
T PRK07530 162 EATFEAAKEFVTKLGKTITVAEDFPAFIVNRILLPMINEAIYTLYEGVGSVEAIDTAMKLGANHPMGPLELADFIGLDTC 241 (292)
T ss_pred HHHHHHHHHHHHHcCCeEEEecCcCChHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHhCCCCCCCHHHHHHHhhhHHH
Confidence 999999999999999999999999999999999999999999999998 999999999 799999999999999999999
Q ss_pred HHHHHHHHHhCCCCC-CchHHHHHHHHcCCCCc---ccceeeCCC
Q 007805 544 AATSKEFDKAFPDRS-FQSPLVDLLLKSGRNGN---KGFSFLFVF 584 (589)
Q Consensus 544 ~~~~~~l~~~~~~~~-~~~~~l~~~v~~g~~G~---~Gfy~y~~~ 584 (589)
.++++.+++.++++. .|++++.+|+++|++|+ +|||+|+++
T Consensus 242 ~~~~~~~~~~~~~~~~~p~~~l~~~v~~g~~G~k~g~Gfy~y~~~ 286 (292)
T PRK07530 242 LSIMQVLHDGLADSKYRPCPLLVKYVEAGWLGRKTGRGFYDYRGE 286 (292)
T ss_pred HHHHHHHHHHcCCCcCCCCHHHHHHHHCCCCccccCCEeeeCCCC
Confidence 999999999998754 58899999999999999 999999654
No 17
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=100.00 E-value=1.6e-53 Score=432.18 Aligned_cols=275 Identities=23% Similarity=0.307 Sum_probs=245.7
Q ss_pred CccceEEEEcCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cC
Q 007805 306 RGVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SE 384 (589)
Q Consensus 306 ~~~~kI~IIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~ 384 (589)
+.+++|+|||+|+||++||..++.+|++|++||++++.++.+.+++.+.+..+.+.| +.+ ....++++.++++ ++
T Consensus 5 ~~i~~VaVIGaG~MG~giA~~~a~aG~~V~l~D~~~~~~~~~~~~i~~~~~~~~~~~-~~~---~~~~~~i~~~~~l~~a 80 (321)
T PRK07066 5 TDIKTFAAIGSGVIGSGWVARALAHGLDVVAWDPAPGAEAALRANVANAWPALERQG-LAP---GASPARLRFVATIEAC 80 (321)
T ss_pred CCCCEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcC-CCh---hhHHhhceecCCHHHH
Confidence 568999999999999999999999999999999999999999899998888888877 332 2334688888888 67
Q ss_pred CCCCCEEEEeccCChHHHHHHHHHHHHhCCCCcEEEecCCCCCHHHHhcccCCCCcEEEecCCCCCCCCCeeeEecCCCC
Q 007805 385 FKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERT 464 (589)
Q Consensus 385 ~~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~~~~~~~~~~~r~ig~h~~~p~~~~~lveiv~~~~t 464 (589)
+++||+|||||||++++|+++|+++.+++++++||+||||+++++++++.+.+|+||+++||||||+.+++|||++++.|
T Consensus 81 v~~aDlViEavpE~l~vK~~lf~~l~~~~~~~aIlaSnTS~l~~s~la~~~~~p~R~~g~HffnP~~~~pLVEVv~g~~T 160 (321)
T PRK07066 81 VADADFIQESAPEREALKLELHERISRAAKPDAIIASSTSGLLPTDFYARATHPERCVVGHPFNPVYLLPLVEVLGGERT 160 (321)
T ss_pred hcCCCEEEECCcCCHHHHHHHHHHHHHhCCCCeEEEECCCccCHHHHHHhcCCcccEEEEecCCccccCceEEEeCCCCC
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHcCCeeEEE-cCCCCcccccccHHHHHHHHHHHHcCC-CHHHHHHHH-HhcCCC---CcHHHHHHHh
Q 007805 465 SAQVILDLMTVGKIIKKVPVVV-GNCTGFAVNRAFFPYSQSARLLVSLGV-DVFRIDSAI-RSFGLP---IGPFQLLDLA 538 (589)
Q Consensus 465 ~~e~~~~~~~l~~~lG~~~v~v-~d~~Gfi~nRi~~~~~~Ea~~l~~~Gv-~~~~iD~~~-~~~g~p---~Gpf~~~D~~ 538 (589)
++++++.+.+|++.+||+||++ +|.||||+||++.++++||++++++|+ +++|||+++ .++|+| +|||+++|++
T Consensus 161 ~~e~~~~~~~f~~~lGk~pV~v~kd~pGFi~NRl~~a~~~EA~~lv~eGvas~edID~a~~~g~g~r~~~~Gpf~~~Dl~ 240 (321)
T PRK07066 161 APEAVDAAMGIYRALGMRPLHVRKEVPGFIADRLLEALWREALHLVNEGVATTGEIDDAIRFGAGIRWSFMGTFLTYTLA 240 (321)
T ss_pred CHHHHHHHHHHHHHcCCEeEecCCCCccHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHhCCCCCccCcCHHHHhhhc
Confidence 9999999999999999999999 799999999999999999999999997 999999999 799998 8999999999
Q ss_pred chHH-HHHHHHHHHHhCCCC---CCchHHHHHHHH------cCCCCc---ccceeeCCC
Q 007805 539 GYGV-AAATSKEFDKAFPDR---SFQSPLVDLLLK------SGRNGN---KGFSFLFVF 584 (589)
Q Consensus 539 Gld~-~~~~~~~l~~~~~~~---~~~~~~l~~~v~------~g~~G~---~Gfy~y~~~ 584 (589)
|+|. +.+.++++.+.+.+. ..+|++..+|++ ++.+|. .++|+|.+.
T Consensus 241 Gld~g~~~~~~~~g~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rd~ 299 (321)
T PRK07066 241 GGDAGMRHFMQQFGPALELPWTKLVAPELTDALIDRVVEGTAEQQGPRSIKALERYRDE 299 (321)
T ss_pred ChHHHHHHHHHHhhhhhhHHHHhcCCCcccHHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 9998 555666665554322 224556667766 577876 789888643
No 18
>KOG1680 consensus Enoyl-CoA hydratase [Lipid transport and metabolism]
Probab=100.00 E-value=2.1e-52 Score=396.16 Aligned_cols=246 Identities=33% Similarity=0.525 Sum_probs=224.0
Q ss_pred EecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCCcCCCCchhhhhccCCCcccccchhHHH
Q 007805 10 VGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVE 88 (589)
Q Consensus 10 ~~~~~v~~i~l~~p~-~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~ 88 (589)
..+++|+.|+||||+ +|+++..++.+|.+++..+++|+.+.++||||.|+.||+|+|++++......+... ..+.+
T Consensus 42 ~~d~~I~lItlNRP~~~Nal~~~~m~eL~~A~~~~e~D~s~~viVltG~gksFcsG~Dl~e~~~~~~~~~~~---~~~~~ 118 (290)
T KOG1680|consen 42 GEDNGIALITLNRPKALNALCRATMLELAEAFKDFESDDSVGVIVLTGSGKSFCSGADLKEMKKDEFQDVSD---GIFLR 118 (290)
T ss_pred ecCCCeEEEEeCChHHhccccHHHHHHHHHHHHHhhccCcccEEEEEcCCCccccccCHHHHhhcccccccc---ccccc
Confidence 337899999999997 79999999999999999999999999999999999999999999997643322111 11223
Q ss_pred HHHHHHHhCCCcEEEEeCCcccchhhHHhhhcCEEEEeCCceEeccccccCCCCChhhhhhHhhhcCHHHHHHHHHcCCC
Q 007805 89 LVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKS 168 (589)
Q Consensus 89 ~~~~~l~~~~kp~iaav~G~a~GgG~~lala~D~~ia~~~a~~~~pe~~~Gl~p~~g~~~~l~~~~G~~~a~~l~ltg~~ 168 (589)
.+ ..+.+.+||+||+|||+|+|||+||+|+||+|||+++|+|++++.++|++|.||||++|+|.+|..+|+++++||++
T Consensus 119 ~~-~~~~~~~KPvIaainG~AlgGG~ELalmCDirva~~~Akfg~~~~~~Gi~p~~GGT~rl~r~vG~s~Ale~~ltg~~ 197 (290)
T KOG1680|consen 119 VW-DLVSRLKKPVIAAINGFALGGGLELALMCDIRVAGEGAKFGFFEIRMGIIPSWGGTQRLPRIVGKSRALEMILTGRR 197 (290)
T ss_pred hh-hhhhhcccceeEeeeceeeccchhhhhhcceEeccCCCeecccccccCCccCCCchhhHHHHhChHHHHHHHHhcCc
Confidence 33 44558999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHcCCcceecCchHHHHHHHHHHHHHHhcChhhhhhhhccCCCCChHHHHHHHHHHHHHHHHhCCCChhHHHHH
Q 007805 169 ITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPNMPQHQACL 248 (589)
Q Consensus 169 ~~a~~A~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 248 (589)
++|+||+++||||+|||.++++.+|.+|+++|++.|+..++ +.|
T Consensus 198 ~~AqeA~~~GlVn~Vvp~~~~l~eAv~l~~~Ia~~~~~~v~------------------------------------~~K 241 (290)
T KOG1680|consen 198 LGAQEAKKIGLVNKVVPSGDALGEAVKLAEQIAKNSPLVVR------------------------------------ADK 241 (290)
T ss_pred ccHHHHHhCCceeEeecchhHHHHHHHHHHHHHhCCHHHHH------------------------------------HHH
Confidence 99999999999999999999999999999999999986554 557
Q ss_pred HHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHhHHHHHHHhhhccCC
Q 007805 249 DVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKV 295 (589)
Q Consensus 249 ~~~~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~af~~~r~~~~~ 295 (589)
++++.+.+.++..++..|...|...+.++|.+|++.+|.+||++++.
T Consensus 242 ~svn~~~e~~l~e~l~~e~~~~~s~~~~~d~~Eg~~~f~~kr~~~~~ 288 (290)
T KOG1680|consen 242 ESVNAAYETTLFEGLELERDLFGSTFATEDRLEGMTAFAEKRKPKFS 288 (290)
T ss_pred HHHHHHhhccHHHHHHhhhhhhhhhhhhHHHHHHHHHhcccCCcccc
Confidence 88999999999999999999999999999999999999999999874
No 19
>PRK08269 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=100.00 E-value=1.9e-51 Score=419.19 Aligned_cols=265 Identities=28% Similarity=0.383 Sum_probs=253.0
Q ss_pred CcHHHHHHHHhCCCeEEEEeCChH-------HHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCC--c-cCCCCC
Q 007805 319 MGSGIATAHILNNIYVVLKEVNSE-------YLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLD--Y-SEFKDV 388 (589)
Q Consensus 319 mG~~iA~~l~~~G~~V~~~d~~~~-------~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~--~-~~~~~a 388 (589)
||++||..++.+|++|++||++++ .++++.+++++.+++++++|.+++++.+..+++++++++ . +++++|
T Consensus 1 MG~giA~~~a~~G~~V~l~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~a~~~a 80 (314)
T PRK08269 1 MGQGIALAFAFAGHDVTLIDFKPRDAAGWRALDAEARAEIERTLAALVALGRIDAAQADAVLARIAVVARDGAADALADA 80 (314)
T ss_pred CcHHHHHHHHhCCCeEEEEeCCcccchhhHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEeecCcchHHHhccC
Confidence 899999999999999999999995 477799999999999999999999999999999998865 3 678999
Q ss_pred CEEEEeccCChHHHHHHHHHHHHhCCCCcEEEecCCCCCHHHHhcccCCCCcEEEecCCCCCCCCCeeeEecCCCCCHHH
Q 007805 389 DMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQV 468 (589)
Q Consensus 389 DlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~~~~~~~~~~~r~ig~h~~~p~~~~~lveiv~~~~t~~e~ 468 (589)
|+|||||||+.++|+++|++|.+.+++++||+||||++++++++..+.+|+|++|+|||+||+.+++|||++++.|++++
T Consensus 81 D~ViEav~E~~~~K~~~f~~l~~~~~~~~ilaSntS~~~~~~la~~~~~p~r~~g~Hf~~Pp~~~~lvEVv~g~~t~~e~ 160 (314)
T PRK08269 81 DLVFEAVPEVLDAKREALRWLGRHVDADAIIASTTSTFLVTDLQRHVAHPERFLNAHWLNPAYLMPLVEVSPSDATDPAV 160 (314)
T ss_pred CEEEECCcCCHHHHHHHHHHHHhhCCCCcEEEEccccCCHHHHHhhcCCcccEEEEecCCccccCceEEEeCCCCCCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHcCCeeEEEcCCCCcccccccHHHHHHHHHHHHcCC-CHHHHHHHH-HhcCCC---CcHHHHHHHhchHHH
Q 007805 469 ILDLMTVGKIIKKVPVVVGNCTGFAVNRAFFPYSQSARLLVSLGV-DVFRIDSAI-RSFGLP---IGPFQLLDLAGYGVA 543 (589)
Q Consensus 469 ~~~~~~l~~~lG~~~v~v~d~~Gfi~nRi~~~~~~Ea~~l~~~Gv-~~~~iD~~~-~~~g~p---~Gpf~~~D~~Gld~~ 543 (589)
++.+.++++.+|+.|++++|.|||++||++.++++|++.++++|+ ++++||.++ .++||| +|||+++|.+|+|++
T Consensus 161 ~~~~~~ll~~lGk~~v~v~d~~Gfi~nri~~~~l~EAl~l~e~g~~~~e~iD~a~~~g~G~~~~~~Gpf~~~D~~Gld~~ 240 (314)
T PRK08269 161 VDRLAALLERIGKVPVVCGPSPGYIVPRIQALAMNEAARMVEEGVASAEDIDKAIRTGFGLRFAVLGLLEFIDWGGCDIL 240 (314)
T ss_pred HHHHHHHHHHcCCcEEEecCCCCcchHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHhCCCCCccCcCHHHHHHhhhHHHH
Confidence 999999999999999999999999999999999999999999985 999999999 799999 699999999999999
Q ss_pred HHHHHHHHHhCCC-CCCchHHHHHHHHcCCCCc---ccceeeCC
Q 007805 544 AATSKEFDKAFPD-RSFQSPLVDLLLKSGRNGN---KGFSFLFV 583 (589)
Q Consensus 544 ~~~~~~l~~~~~~-~~~~~~~l~~~v~~g~~G~---~Gfy~y~~ 583 (589)
+++++.+++.+++ ++.|++++++|+++|++|+ +|||+|++
T Consensus 241 ~~~~~~l~~~~~~~~~~p~~~l~~~v~~g~~G~ksG~GfY~y~~ 284 (314)
T PRK08269 241 YYASRYLAGEIGPDRFAPPAIVVRNMEEGRDGLRTGAGFYDYAG 284 (314)
T ss_pred HHHHHHHHHHhCCCCCCCCHHHHHHHHCCCCcccCCCcceeCCC
Confidence 9999999999988 5568999999999999999 99999975
No 20
>PRK05862 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=4.5e-51 Score=407.73 Aligned_cols=253 Identities=30% Similarity=0.470 Sum_probs=228.8
Q ss_pred CCCCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCCcCCCCchhhhhccCCCcc
Q 007805 1 MAAPRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDV 79 (589)
Q Consensus 1 M~~~~~~~~~~~~~v~~i~l~~p~-~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~ 79 (589)
|+++.+.+++ +++|++|+||||+ .|++|.+|+++|.+++++++.|+++|+|||||.|++||+|+|++++..... .
T Consensus 1 ~~~~~v~~~~-~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vvl~g~g~~F~aG~Dl~~~~~~~~---~ 76 (257)
T PRK05862 1 MAYETILVET-RGRVGLITLNRPKALNALNDALMDELGAALAAFDADEGIGAIVITGSEKAFAAGADIKEMADLSF---M 76 (257)
T ss_pred CCCceEEEEe-eCCEEEEEEcCCcccCCCCHHHHHHHHHHHHHHhhCCCeeEEEEECCCCceECCcChHhHhccch---h
Confidence 7888899998 7899999999996 699999999999999999999999999999999999999999998754211 1
Q ss_pred cccchhHHHHHHHHHHhCCCcEEEEeCCcccchhhHHhhhcCEEEEeCCceEeccccccCCCCChhhhhhHhhhcCHHHH
Q 007805 80 SLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKA 159 (589)
Q Consensus 80 ~~~~~~~~~~~~~~l~~~~kp~iaav~G~a~GgG~~lala~D~~ia~~~a~~~~pe~~~Gl~p~~g~~~~l~~~~G~~~a 159 (589)
..+.......+ ..+.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|..++
T Consensus 77 ~~~~~~~~~~~-~~l~~~~kpvIaav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a 155 (257)
T PRK05862 77 DVYKGDYITNW-EKVARIRKPVIAAVAGYALGGGCELAMMCDIIIAADTAKFGQPEIKLGVLPGMGGSQRLTRAVGKAKA 155 (257)
T ss_pred HHHHHHHHHHH-HHHHhCCCCEEEEEccEEeHHHHHHHHHCCEEEEeCCCEEeCchhccCcCCCccHHHHHHHHhCHHHH
Confidence 11112223445 67899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCCCCHHHHHHcCCcceecCchHHHHHHHHHHHHHHhcChhhhhhhhccCCCCChHHHHHHHHHHHHHHHHhCC
Q 007805 160 IEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAP 239 (589)
Q Consensus 160 ~~l~ltg~~~~a~~A~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (589)
++|+++|++++|+||+++||||+|||++++++++.++++++++.+|.+++
T Consensus 156 ~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~l~~~~~~a~~------------------------------ 205 (257)
T PRK05862 156 MDLCLTGRMMDAAEAERAGLVSRVVPADKLLDEALAAATTIASFSLPAVM------------------------------ 205 (257)
T ss_pred HHHHHhCCccCHHHHHHcCCCCEeeCHhHHHHHHHHHHHHHHhCCHHHHH------------------------------
Confidence 99999999999999999999999999999999999999999998876543
Q ss_pred CChhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHhHHHHHHHhhhccC
Q 007805 240 NMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSK 294 (589)
Q Consensus 240 ~~~a~~~~~~~~~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~af~~~r~~~~ 294 (589)
.+|++++.....++.++++.|.+.+..++.|+|+++++++|++||+|++
T Consensus 206 ------~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~s~~~~e~i~af~~kr~p~~ 254 (257)
T PRK05862 206 ------MAKEAVNRAYETTLAEGLLFERRLFHSLFATEDQKEGMAAFVEKRKPVF 254 (257)
T ss_pred ------HHHHHHHHHhcCCHHHHHHHHHHHHHHHhcChhHHHHHHHHhccCCCCC
Confidence 5577888877788999999999999999999999999999999998774
No 21
>PRK07658 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=4.2e-51 Score=408.46 Aligned_cols=252 Identities=40% Similarity=0.659 Sum_probs=226.5
Q ss_pred cEEEEEecCcEEEEEeCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCCcCCCCchhhhhccCCCcccccch
Q 007805 5 RVTMEVGNDGVAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPD 84 (589)
Q Consensus 5 ~~~~~~~~~~v~~i~l~~p~~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~ 84 (589)
++.+++ +++|++|+||||+.|++|.+|+++|.++++.++.|+++|+|||+|.|++||+|.|++++...........+..
T Consensus 3 ~i~~~~-~~~v~~itl~rp~~Nal~~~~~~~l~~~l~~~~~d~~vr~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~ 81 (257)
T PRK07658 3 FLSVRV-EDHVAVITLNHPPANALSSQVLHELSELLDQVEKDDNVRVVVIHGEGRFFSAGADIKEFTSVTEAEQATELAQ 81 (257)
T ss_pred eEEEEe-eCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCceEeCcCHHHHhccCchhhHHHHHH
Confidence 688888 8899999999998899999999999999999999999999999999999999999998754322111111222
Q ss_pred hHHHHHHHHHHhCCCcEEEEeCCcccchhhHHhhhcCEEEEeCCceEeccccccCCCCChhhhhhHhhhcCHHHHHHHHH
Q 007805 85 VSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMML 164 (589)
Q Consensus 85 ~~~~~~~~~l~~~~kp~iaav~G~a~GgG~~lala~D~~ia~~~a~~~~pe~~~Gl~p~~g~~~~l~~~~G~~~a~~l~l 164 (589)
....++ +++.++|||+||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|..+|++|++
T Consensus 82 ~~~~~~-~~l~~~~kpvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a~~l~l 160 (257)
T PRK07658 82 LGQVTF-ERVEKFSKPVIAAIHGAALGGGLELAMSCHIRFATESAKLGLPELNLGLIPGFAGTQRLPRYVGKAKALEMML 160 (257)
T ss_pred HHHHHH-HHHHhCCCCEEEEEcCeeeeHHHHHHHhCCEEEecCCCcccCcccccCCCCCCcHHHHHHHHhCHHHHHHHHH
Confidence 334555 6789999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCHHHHHHcCCcceecCchHHHHHHHHHHHHHHhcChhhhhhhhccCCCCChHHHHHHHHHHHHHHHHhCCCChhH
Q 007805 165 LSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPNMPQH 244 (589)
Q Consensus 165 tg~~~~a~~A~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 244 (589)
+|++++|+||+++||||+|||++++.+++.++++++++.||.+++
T Consensus 161 ~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~l~~~~~~a~~----------------------------------- 205 (257)
T PRK07658 161 TSEPITGAEALKWGLVNGVFPEETLLDDAKKLAKKIAGKSPATTR----------------------------------- 205 (257)
T ss_pred cCCCcCHHHHHHcCCcCeecChhHHHHHHHHHHHHHHhCCHHHHH-----------------------------------
Confidence 999999999999999999999999999999999999999876443
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHhHHHHHHHhhhccC
Q 007805 245 QACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSK 294 (589)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~af~~~r~~~~ 294 (589)
.+|++++.....+++++++.|.+.+..++.++|+++++++|++||+|++
T Consensus 206 -~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~egi~af~~kr~p~~ 254 (257)
T PRK07658 206 -AVLELLQTTKSSSYYEGVKREAKIFGEVFTSEDAKEGVQAFLEKRKPSF 254 (257)
T ss_pred -HHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHcCCCCCC
Confidence 4567787777778999999999999999999999999999999998875
No 22
>PRK05809 3-hydroxybutyryl-CoA dehydratase; Validated
Probab=100.00 E-value=1.3e-50 Score=405.43 Aligned_cols=255 Identities=33% Similarity=0.546 Sum_probs=230.4
Q ss_pred CCCCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCC-CCCcCCCCchhhhhccCCCc
Q 007805 1 MAAPRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNG-GRFSGGFDINVFQKVHGAGD 78 (589)
Q Consensus 1 M~~~~~~~~~~~~~v~~i~l~~p~-~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g-~~F~aG~Dl~~~~~~~~~~~ 78 (589)
|+|+.+.+++ +++|++|+||||+ .|++|.+|+.+|.++++.+++|+++|+|||||.| ++||+|+|++++..... ..
T Consensus 1 ~~~~~i~~~~-~~~v~~itlnrp~~~Nal~~~~~~~l~~~~~~~~~d~~v~~vvl~g~g~~~F~aG~Dl~~~~~~~~-~~ 78 (260)
T PRK05809 1 MELKNVILEK-EGHIAVVTINRPKALNALNSETLKELDTVLDDIENDDNVYAVILTGAGEKAFVAGADISEMKDLNE-EE 78 (260)
T ss_pred CCcceEEEEE-eCCEEEEEECCCcccCCCCHHHHHHHHHHHHHHhcCCCcEEEEEEcCCCCceeeCcChHhHhccCh-HH
Confidence 8999999999 7899999999996 6999999999999999999999999999999999 89999999998754221 11
Q ss_pred ccccchhHHHHHHHHHHhCCCcEEEEeCCcccchhhHHhhhcCEEEEeCCceEeccccccCCCCChhhhhhHhhhcCHHH
Q 007805 79 VSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSK 158 (589)
Q Consensus 79 ~~~~~~~~~~~~~~~l~~~~kp~iaav~G~a~GgG~~lala~D~~ia~~~a~~~~pe~~~Gl~p~~g~~~~l~~~~G~~~ 158 (589)
...+......++ +.+.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|..+
T Consensus 79 ~~~~~~~~~~~~-~~l~~~~kPvIaav~G~a~GgG~~lal~cD~~va~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~ 157 (260)
T PRK05809 79 GRKFGLLGNKVF-RKLENLDKPVIAAINGFALGGGCELSMACDIRIASEKAKFGQPEVGLGITPGFGGTQRLARIVGPGK 157 (260)
T ss_pred HHHHHHHHHHHH-HHHHcCCCCEEEEEcCeeecHHHHHHHhCCEEEeeCCCEEeCcccccCCCCCccHHHHHHHHhCHHH
Confidence 111222233555 6799999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCCCCHHHHHHcCCcceecCchHHHHHHHHHHHHHHhcChhhhhhhhccCCCCChHHHHHHHHHHHHHHHHhC
Q 007805 159 AIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTA 238 (589)
Q Consensus 159 a~~l~ltg~~~~a~~A~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (589)
|++|+++|++++|+||+++||||+|||++++.+++.++++++++.||.+++
T Consensus 158 a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~a~~----------------------------- 208 (260)
T PRK05809 158 AKELIYTGDMINAEEALRIGLVNKVVEPEKLMEEAKALANKIAANAPIAVK----------------------------- 208 (260)
T ss_pred HHHHHHhCCCCCHHHHHHcCCCCcccChHHHHHHHHHHHHHHHhCCHHHHH-----------------------------
Confidence 999999999999999999999999999999999999999999999876543
Q ss_pred CCChhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHhHHHHHHHhhhccC
Q 007805 239 PNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSK 294 (589)
Q Consensus 239 ~~~~a~~~~~~~~~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~af~~~r~~~~ 294 (589)
.+|+.++.....++.++++.|.+.+..++.++|+++++++|++||+|++
T Consensus 209 -------~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~egi~af~~~r~p~~ 257 (260)
T PRK05809 209 -------LCKDAINRGMQVDIDTAVAIEAEDFGECFSTEDQTEGMTAFVEKREKNF 257 (260)
T ss_pred -------HHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHhcCCCCCC
Confidence 4577888887888999999999999999999999999999999998774
No 23
>PRK05980 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=1.1e-50 Score=405.84 Aligned_cols=254 Identities=33% Similarity=0.548 Sum_probs=226.1
Q ss_pred CCCCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCC-CCCcCCCCchhhhhccCCCc
Q 007805 1 MAAPRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNG-GRFSGGFDINVFQKVHGAGD 78 (589)
Q Consensus 1 M~~~~~~~~~~~~~v~~i~l~~p~-~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g-~~F~aG~Dl~~~~~~~~~~~ 78 (589)
|+ +.+.++. +++|++|+||||+ .|++|.+|+++|.++++.++.|+++|+|||||.| ++||+|.|++++........
T Consensus 1 m~-~~i~~~~-~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~~F~aG~Dl~~~~~~~~~~~ 78 (260)
T PRK05980 1 MT-DTVLIEI-RDGIALLTLNRPEKLNALNYALIDRLLARLDAIEVDESVRAVILTGAGDRAFSAGADIHEFSASVAAGA 78 (260)
T ss_pred CC-ceEEEEE-ECCEEEEEECCcccccCCCHHHHHHHHHHHHHHhhCCCcEEEEEEeCCCCceEcCcCHHHHhhhccccc
Confidence 66 4688888 8899999999995 7999999999999999999999999999999998 69999999998754211110
Q ss_pred ---ccccchhHHHHHHHHHHhCCCcEEEEeCCcccchhhHHhhhcCEEEEeCCceEeccccccCCCCChhhhhhHhhhcC
Q 007805 79 ---VSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVG 155 (589)
Q Consensus 79 ---~~~~~~~~~~~~~~~l~~~~kp~iaav~G~a~GgG~~lala~D~~ia~~~a~~~~pe~~~Gl~p~~g~~~~l~~~~G 155 (589)
...+.....+++ ..+.++|||+||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|
T Consensus 79 ~~~~~~~~~~~~~~~-~~l~~~~kPvIaav~G~a~GgG~~lal~cD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG 157 (260)
T PRK05980 79 DVALRDFVRRGQAMT-ARLEAFPKPVIAAVNGLAFGGGCEITEAVHLAIASERALFAKPEIRLGMPPTFGGTQRLPRLAG 157 (260)
T ss_pred hhhHHHHHHHHHHHH-HHHHhCCCCEEEEEcCEEEhhhhHHhHhCCEEEecCCCEecCcccccCCCCCchHhhHHHhhcC
Confidence 111222223455 6788999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCCCCHHHHHHcCCcceecCchHHHHHHHHHHHHHHhcChhhhhhhhccCCCCChHHHHHHHHHHHHHHH
Q 007805 156 LSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAK 235 (589)
Q Consensus 156 ~~~a~~l~ltg~~~~a~~A~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (589)
..+|++++++|++++|+||+++||||+|||++++++++.++++++++.||.+++
T Consensus 158 ~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~p~a~~-------------------------- 211 (260)
T PRK05980 158 RKRALELLLTGDAFSAERALEIGLVNAVVPHEELLPAARALARRIIRHSPVAVA-------------------------- 211 (260)
T ss_pred HHHHHHHHHcCCccCHHHHHHcCCCCcccCHHHHHHHHHHHHHHHHhCCHHHHH--------------------------
Confidence 999999999999999999999999999999999999999999999999886543
Q ss_pred HhCCCChhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHhHHHHHHHhhhcc
Q 007805 236 KTAPNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATS 293 (589)
Q Consensus 236 ~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~af~~~r~~~ 293 (589)
.+|++++.....++.++++.|.+.+..++.++|+++++.+|++||+|+
T Consensus 212 ----------~~K~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~e~~~af~~kr~p~ 259 (260)
T PRK05980 212 ----------AILTAVTRGLNLSIAEGLLIESEQFARMAGSADLREGLAAWIERRRPA 259 (260)
T ss_pred ----------HHHHHHHHHhcCCHHHHHHHHHHHHHHHhcChhHHHHHHHHhccCCCC
Confidence 456777777778899999999999999999999999999999999876
No 24
>PRK09076 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=1.4e-50 Score=404.20 Aligned_cols=251 Identities=31% Similarity=0.481 Sum_probs=225.1
Q ss_pred cEEEEEecCcEEEEEeCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCC-CCCcCCCCchhhhhccCCCcccccc
Q 007805 5 RVTMEVGNDGVAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNG-GRFSGGFDINVFQKVHGAGDVSLMP 83 (589)
Q Consensus 5 ~~~~~~~~~~v~~i~l~~p~~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g-~~F~aG~Dl~~~~~~~~~~~~~~~~ 83 (589)
.+.+++ +++|++||||||+.|++|.+|+.+|.++++.+++|+++|+|||||.| ++||+|+|++++...... ....+.
T Consensus 4 ~v~~~~-~~~v~~itlnrp~~Nal~~~~~~~l~~al~~~~~d~~vrvvVl~g~g~~~F~aG~Dl~~~~~~~~~-~~~~~~ 81 (258)
T PRK09076 4 ELDLEI-DGHVAILTLNNPPANTWTADSLQALKQLVLELNADKDVYALVITGDGEKFFSAGADLNLFADGDKA-VAREMA 81 (258)
T ss_pred EEEEEE-ECCEEEEEECCCCcCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCCceEeCcCHHHHhhcChh-hHHHHH
Confidence 588888 78999999999988999999999999999999999999999999998 689999999987542111 111122
Q ss_pred hhHHHHHHHHHHhCCCcEEEEeCCcccchhhHHhhhcCEEEEeCCceEeccccccCCCCChhhhhhHhhhcCHHHHHHHH
Q 007805 84 DVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMM 163 (589)
Q Consensus 84 ~~~~~~~~~~l~~~~kp~iaav~G~a~GgG~~lala~D~~ia~~~a~~~~pe~~~Gl~p~~g~~~~l~~~~G~~~a~~l~ 163 (589)
.....++ .++.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|..+|++++
T Consensus 82 ~~~~~~~-~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~iG~~~a~~l~ 160 (258)
T PRK09076 82 RRFGEAF-EALSAFRGVSIAAINGYAMGGGLECALACDIRIAEEQAQMALPEASVGLLPCAGGTQNLPWLVGEGWAKRMI 160 (258)
T ss_pred HHHHHHH-HHHHhCCCCEEEEECCEEecHHHHHHHhCCEEEecCCCEeeCcccccCCCCCccHHHHHHHHhCHHHHHHHH
Confidence 2233455 678999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCCCCHHHHHHcCCcceecCchHHHHHHHHHHHHHHhcChhhhhhhhccCCCCChHHHHHHHHHHHHHHHHhCCCChh
Q 007805 164 LLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPNMPQ 243 (589)
Q Consensus 164 ltg~~~~a~~A~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a 243 (589)
++|++++|+||+++||||+|||++++.+++.++++++++.||.+++
T Consensus 161 l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~l~~~~~~a~~---------------------------------- 206 (258)
T PRK09076 161 LCGERVDAATALRIGLVEEVVEKGEAREAALALAQKVANQSPSAVA---------------------------------- 206 (258)
T ss_pred HcCCcCCHHHHHHCCCCceecCchhHHHHHHHHHHHHHhCCHHHHH----------------------------------
Confidence 9999999999999999999999999999999999999999986544
Q ss_pred HHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHhHHHHHHHhhhccC
Q 007805 244 HQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSK 294 (589)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~af~~~r~~~~ 294 (589)
.+|++++.....++.+.++.|.+.+..++.++|+++++++|++||+|++
T Consensus 207 --~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~eg~~af~~kr~p~~ 255 (258)
T PRK09076 207 --ACKTLIQAARNGPRAAALALERELFVDLFDTEDQREGVNAFLEKRAPQW 255 (258)
T ss_pred --HHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCchHHHHHHHHhcCCCCCC
Confidence 4567777777778999999999999999999999999999999998875
No 25
>PRK08140 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=1.7e-50 Score=404.99 Aligned_cols=255 Identities=25% Similarity=0.380 Sum_probs=227.1
Q ss_pred CCCCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCCcCCCCchhhhhccCCC--
Q 007805 1 MAAPRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAG-- 77 (589)
Q Consensus 1 M~~~~~~~~~~~~~v~~i~l~~p~-~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~-- 77 (589)
|+|+.+.+++ +++|++||||||+ .|++|.+|+.+|.+++++++ |+++|+|||||.|++||+|+|++++.......
T Consensus 1 ~~~~~i~~~~-~~~v~~itlnrp~~~Nal~~~~~~~l~~~~~~~~-d~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~ 78 (262)
T PRK08140 1 MMYETILLAI-EAGVATLTLNRPDKLNSFTREMHRELREALDQVE-DDGARALLLTGAGRGFCAGQDLADRDVTPGGAMP 78 (262)
T ss_pred CCCceEEEEe-ECCEEEEEecCCcccCCCCHHHHHHHHHHHHHhc-CCCceEEEEECCCCCcccCcChHHHhccccccch
Confidence 8888999998 7899999999996 79999999999999999999 99999999999999999999999875321111
Q ss_pred cc-cccchhHHHHHHHHHHhCCCcEEEEeCCcccchhhHHhhhcCEEEEeCCceEeccccccCCCCChhhhhhHhhhcCH
Q 007805 78 DV-SLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGL 156 (589)
Q Consensus 78 ~~-~~~~~~~~~~~~~~l~~~~kp~iaav~G~a~GgG~~lala~D~~ia~~~a~~~~pe~~~Gl~p~~g~~~~l~~~~G~ 156 (589)
.. ..+......++ ..+.++|||+||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|.
T Consensus 79 ~~~~~~~~~~~~~~-~~l~~~~kPvIaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~G~~p~~g~~~~l~~~vG~ 157 (262)
T PRK08140 79 DLGESIETFYNPLV-RRLRALPLPVIAAVNGVAAGAGANLALACDIVLAARSASFIQAFVKIGLVPDSGGTWFLPRLVGM 157 (262)
T ss_pred hhHHHHHHHHHHHH-HHHHhCCCCEEEEECCeeehhHHHHHHhCCEEEecCCCEEeccccccCCCCCccHHHHHHHHhCH
Confidence 00 01111122344 67889999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCCCCHHHHHHcCCcceecCchHHHHHHHHHHHHHHhcChhhhhhhhccCCCCChHHHHHHHHHHHHHHHH
Q 007805 157 SKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKK 236 (589)
Q Consensus 157 ~~a~~l~ltg~~~~a~~A~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (589)
.++++|+++|++++|+||+++||||+|||++++++++.+++++|++.||.+++
T Consensus 158 ~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~ia~~~~~a~~--------------------------- 210 (262)
T PRK08140 158 ARALGLALLGEKLSAEQAEQWGLIWRVVDDAALADEAQQLAAHLATQPTRGLA--------------------------- 210 (262)
T ss_pred HHHHHHHHcCCCcCHHHHHHcCCccEeeChHHHHHHHHHHHHHHHhCCHHHHH---------------------------
Confidence 99999999999999999999999999999999999999999999999876543
Q ss_pred hCCCChhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHhHHHHHHHhhhccC
Q 007805 237 TAPNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSK 294 (589)
Q Consensus 237 ~~~~~~a~~~~~~~~~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~af~~~r~~~~ 294 (589)
.+|+.++.....++.++++.|...+..++.++|+++++.+|++||+|++
T Consensus 211 ---------~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~e~~~af~~kr~p~~ 259 (262)
T PRK08140 211 ---------LIKQAMNASATNTLDAQLDLERDLQREAGRSADYAEGVSAFLEKRAPRF 259 (262)
T ss_pred ---------HHHHHHHHhhhCCHHHHHHHHHHHHHHHhcChhHHHHHHHHhcCCCCCC
Confidence 4567788777788999999999999999999999999999999998775
No 26
>PRK06142 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=1.2e-50 Score=408.06 Aligned_cols=256 Identities=28% Similarity=0.420 Sum_probs=226.5
Q ss_pred CC-CCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCCcCCCCchhhhhccCC--
Q 007805 1 MA-APRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGA-- 76 (589)
Q Consensus 1 M~-~~~~~~~~~~~~v~~i~l~~p~-~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~-- 76 (589)
|+ ++++.+++ +++|++|+||||+ .|++|.+|+.+|.+++++++.|+++|+|||||.|++||+|+|++++......
T Consensus 2 ~~~~~~v~~~~-~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vVl~g~g~~FcaG~Dl~~~~~~~~~~~ 80 (272)
T PRK06142 2 MTTYESFTVEL-ADHVAQVTLNRPGKGNAMNPAFWSELPEIFRWLDADPEVRAVVLSGSGKHFSYGIDLPAMAGVFGQLG 80 (272)
T ss_pred CCCcceEEEEe-cCCEEEEEEcCCCccCCCCHHHHHHHHHHHHHHhhCCCeEEEEEECCCCceecccCHHHHhhhccccc
Confidence 55 57899998 8999999999995 7999999999999999999999999999999999999999999987542110
Q ss_pred ----Cc-ccc---cchhHHHHHHHHHHhCCCcEEEEeCCcccchhhHHhhhcCEEEEeCCceEeccccccCCCCChhhhh
Q 007805 77 ----GD-VSL---MPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQ 148 (589)
Q Consensus 77 ----~~-~~~---~~~~~~~~~~~~l~~~~kp~iaav~G~a~GgG~~lala~D~~ia~~~a~~~~pe~~~Gl~p~~g~~~ 148 (589)
.. ... ......+++ ..+..+||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|+++
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~-~~i~~~~kpvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~ 159 (272)
T PRK06142 81 KDGLARPRTDLRREILRLQAAI-NAVADCRKPVIAAVQGWCIGGGVDLISACDMRYASADAKFSVREVDLGMVADVGSLQ 159 (272)
T ss_pred ccccccchHHHHHHHHHHHHHH-HHHHhCCCCEEEEecCccccchHHHHHhCCEEEecCCCeecchhhhhCCCCCchHHH
Confidence 00 011 111223455 668999999999999999999999999999999999999999999999999999999
Q ss_pred hHhhhcCHHHHHHHHHcCCCCCHHHHHHcCCcceecCc-hHHHHHHHHHHHHHHhcChhhhhhhhccCCCCChHHHHHHH
Q 007805 149 RLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTS-EELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVL 227 (589)
Q Consensus 149 ~l~~~~G~~~a~~l~ltg~~~~a~~A~~~Glv~~vv~~-~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (589)
+||+++|..+|++|+++|++++|+||+++||||+|||+ +++++++.+++++|++.||.+++
T Consensus 160 ~l~~~~G~~~a~~l~l~g~~~~a~eA~~~GLv~~vv~~~~~l~~~a~~~a~~ia~~~~~a~~------------------ 221 (272)
T PRK06142 160 RLPRIIGDGHLRELALTGRDIDAAEAEKIGLVNRVYDDADALLAAAHATAREIAAKSPLAVR------------------ 221 (272)
T ss_pred HHHHHhCHHHHHHHHHhCCCcCHHHHHHcCCccEecCCHHHHHHHHHHHHHHHHhCCHHHHH------------------
Confidence 99999999999999999999999999999999999985 88999999999999999886554
Q ss_pred HHHHHHHHHhCCCChhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHhHHHHHHHhhhccC
Q 007805 228 KLARLQAKKTAPNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSK 294 (589)
Q Consensus 228 ~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~af~~~r~~~~ 294 (589)
.+|+.++.....++.++++.|...+..++.|+|++|++.+|++||+|++
T Consensus 222 ------------------~~K~~l~~~~~~~l~~~~~~~~~~~~~~~~~~d~~egv~af~~kr~p~~ 270 (272)
T PRK06142 222 ------------------GTKEVLDYMRDHRVADGLRYVATWNAAMLPSKDLTEAIAAHMEKRPPEF 270 (272)
T ss_pred ------------------HHHHHHHHhhcCCHHHHHHHHHHHHHHHhcCccHHHHHHHHhcCCCCCC
Confidence 4567777777778999999999999999999999999999999998774
No 27
>PRK06143 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=1.7e-50 Score=402.46 Aligned_cols=252 Identities=25% Similarity=0.407 Sum_probs=224.8
Q ss_pred CCCCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCC-CCCcCCCCchhhhhccCCCc
Q 007805 1 MAAPRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNG-GRFSGGFDINVFQKVHGAGD 78 (589)
Q Consensus 1 M~~~~~~~~~~~~~v~~i~l~~p~-~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g-~~F~aG~Dl~~~~~~~~~~~ 78 (589)
|+..+++++..+++|++|+||||+ .|++|.+|+++|.++++.++.|+++|+|||||.| ++||+|+|++++..... ..
T Consensus 3 ~~~~~~~~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vVltg~g~~~F~aG~Dl~~~~~~~~-~~ 81 (256)
T PRK06143 3 MLNAHAGVTRDDRGVATLTIRNAGSLNILGTPVILALTQALRWLAADPDVRVLVLRGAGEKAFIGGADIKEMATLDQ-AS 81 (256)
T ss_pred cccccceeeecCCCEEEEEEcCCcccCCCCHHHHHHHHHHHHHHhcCCCcEEEEEEeCCCCcccCCcCHHHHhhcCh-hh
Confidence 677889999757899999999996 6999999999999999999999999999999998 69999999998754221 11
Q ss_pred ccccchhHHHHHHHHHHhCCCcEEEEeCCcccchhhHHhhhcCEEEEeCCceEeccccccCCCCChhhhhhHhhhcCHHH
Q 007805 79 VSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSK 158 (589)
Q Consensus 79 ~~~~~~~~~~~~~~~l~~~~kp~iaav~G~a~GgG~~lala~D~~ia~~~a~~~~pe~~~Gl~p~~g~~~~l~~~~G~~~ 158 (589)
...+......++ +.+.++||||||+|||+|+|||++|+++||+||++++++|++||+++|+ |++|++++|++++|..+
T Consensus 82 ~~~~~~~~~~~~-~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~G~-p~~~~~~~l~~~iG~~~ 159 (256)
T PRK06143 82 AEAFISRLRDLC-DAVRHFPVPVIARIPGWCLGGGLELAAACDLRIAAHDAQFGMPEVRVGI-PSVIHAALLPRLIGWAR 159 (256)
T ss_pred HHHHHHHHHHHH-HHHHhCCCCEEEEECCEEeehhHHHHHhCCEEEecCCCEEeCCccccCC-CCccHHHHHHHhcCHHH
Confidence 111222334555 6789999999999999999999999999999999999999999999998 88888999999999999
Q ss_pred HHHHHHcCCCCCHHHHHHcCCcceecCchHHHHHHHHHHHHHHhcChhhhhhhhccCCCCChHHHHHHHHHHHHHHHHhC
Q 007805 159 AIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTA 238 (589)
Q Consensus 159 a~~l~ltg~~~~a~~A~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (589)
|++++++|++++|+||+++||||+|||++++.+++.++++++++.||.+++
T Consensus 160 a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~a~~----------------------------- 210 (256)
T PRK06143 160 TRWLLLTGETIDAAQALAWGLVDRVVPLAELDAAVERLAASLAGCGPQALR----------------------------- 210 (256)
T ss_pred HHHHHHcCCcCCHHHHHHCCCcCeecCHHHHHHHHHHHHHHHHcCCHHHHH-----------------------------
Confidence 999999999999999999999999999999999999999999999986543
Q ss_pred CCChhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHhHHHHHHHhhh
Q 007805 239 PNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRA 291 (589)
Q Consensus 239 ~~~~a~~~~~~~~~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~af~~~r~ 291 (589)
.+|+.++.....+++++++.|.+.+..++.++|+++++++|++||+
T Consensus 211 -------~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~~~d~~e~~~af~ekr~ 256 (256)
T PRK06143 211 -------QQKRLLREWEDMPLDVAIDDSVAEFGAAFLTGEPQRHMAAFLNRKR 256 (256)
T ss_pred -------HHHHHHHHHccCCHHHHHHHHHHHHHHHhcChHHHHHHHHHHhhcC
Confidence 4567777777788999999999999999999999999999999975
No 28
>PRK08150 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=2.8e-50 Score=400.75 Aligned_cols=251 Identities=28% Similarity=0.426 Sum_probs=223.7
Q ss_pred CcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCCcCCCCchhhhhccCCCccccc
Q 007805 4 PRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLM 82 (589)
Q Consensus 4 ~~~~~~~~~~~v~~i~l~~p~-~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~ 82 (589)
+.+.+++ +++|++|+||||+ .|++|.+|+++|.++++.++ +++|+|||||.|++||+|+|++++...... .....
T Consensus 2 ~~v~~~~-~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~--~~vr~vvltg~g~~F~aG~Dl~~~~~~~~~-~~~~~ 77 (255)
T PRK08150 2 SLVSYEL-DGGVATIGLNRPAKRNALNDGLIAALRAAFARLP--EGVRAVVLHGEGDHFCAGLDLSELRERDAG-EGMHH 77 (255)
T ss_pred ceEEEEe-eCCEEEEEEcCCccccCCCHHHHHHHHHHHHHhh--cCCeEEEEECCCCceecCcCHHHHhhccch-hHHHH
Confidence 4578888 7899999999996 79999999999999999997 789999999999999999999998542211 11111
Q ss_pred chhHHHHHHHHHHhCCCcEEEEeCCcccchhhHHhhhcCEEEEeCCceEeccccccCCCCChhhhhhHhhhcCHHHHHHH
Q 007805 83 PDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEM 162 (589)
Q Consensus 83 ~~~~~~~~~~~l~~~~kp~iaav~G~a~GgG~~lala~D~~ia~~~a~~~~pe~~~Gl~p~~g~~~~l~~~~G~~~a~~l 162 (589)
.....+++ ..+.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|..+|++|
T Consensus 78 ~~~~~~~~-~~l~~~~kPvIaav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~iG~~~a~~l 156 (255)
T PRK08150 78 SRRWHRVF-DKIQYGRVPVIAALHGAVVGGGLELASAAHIRVADESTYFALPEGQRGIFVGGGGSVRVPRLIGVARMTDM 156 (255)
T ss_pred HHHHHHHH-HHHHhCCCCEEEEECCEEEcHHHHHHHhCCEEEEeCCCEEeccccccCCCCCccHHHHHHHHhCHHHHHHH
Confidence 22334555 67899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCCCCHHHHHHcCCcceecCchHHHHHHHHHHHHHHhcChhhhhhhhccCCCCChHHHHHHHHHHHHHHHHhCCCCh
Q 007805 163 MLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPNMP 242 (589)
Q Consensus 163 ~ltg~~~~a~~A~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (589)
++||++++|+||+++||||+|||++++.+++.++|++|++.||.+++
T Consensus 157 ~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~a~~--------------------------------- 203 (255)
T PRK08150 157 MLTGRVYDAQEGERLGLAQYLVPAGEALDKAMELARRIAQNAPLTNF--------------------------------- 203 (255)
T ss_pred HHcCCcCCHHHHHHcCCccEeeCchHHHHHHHHHHHHHHhCCHHHHH---------------------------------
Confidence 99999999999999999999999999999999999999999986543
Q ss_pred hHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHhHHHHHHHhhhccCC
Q 007805 243 QHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKV 295 (589)
Q Consensus 243 a~~~~~~~~~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~af~~~r~~~~~ 295 (589)
.+|++++.....+++++++.|.+.+..++.|+|+++++.+|++||+|+..
T Consensus 204 ---~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~s~d~~eg~~af~~kr~p~~~ 253 (255)
T PRK08150 204 ---AVLNALPRIADMSADDGLFVESLMAAVAQSAPEAKERLRAFLEKKAAKVK 253 (255)
T ss_pred ---HHHHHHHHhccCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHhccCCCCCC
Confidence 45677777777889999999999999999999999999999999988753
No 29
>PRK09674 enoyl-CoA hydratase-isomerase; Provisional
Probab=100.00 E-value=4.1e-50 Score=400.09 Aligned_cols=251 Identities=31% Similarity=0.461 Sum_probs=225.7
Q ss_pred CCCCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCCcCCCCchhhhhccCCCcc
Q 007805 1 MAAPRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDV 79 (589)
Q Consensus 1 M~~~~~~~~~~~~~v~~i~l~~p~-~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~ 79 (589)
|| .+.+++ +++|++||||||+ .|++|.+|+++|.++++.+++|+++|+|||||.|++||+|+|++++..... .
T Consensus 1 ~~--~i~~~~-~~~v~~itlnrp~~~Nal~~~~~~~L~~~~~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~---~ 74 (255)
T PRK09674 1 MS--ELLVSR-QQRVLLLTLNRPEARNALNNALLTQLVNELEAAATDTSIGVCVITGNARFFAAGADLNEMAEKDL---A 74 (255)
T ss_pred Cc--eEEEEe-ECCEEEEEEcCCCccCCCCHHHHHHHHHHHHHHhhCCCcEEEEEECCCCceecccChHhHhccch---h
Confidence 55 477888 7899999999996 699999999999999999999999999999999999999999998754211 1
Q ss_pred cccchhHHHHHHHHHHhCCCcEEEEeCCcccchhhHHhhhcCEEEEeCCceEeccccccCCCCChhhhhhHhhhcCHHHH
Q 007805 80 SLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKA 159 (589)
Q Consensus 80 ~~~~~~~~~~~~~~l~~~~kp~iaav~G~a~GgG~~lala~D~~ia~~~a~~~~pe~~~Gl~p~~g~~~~l~~~~G~~~a 159 (589)
..+......++ +.+.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|..++
T Consensus 75 ~~~~~~~~~~~-~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~ig~~~a 153 (255)
T PRK09674 75 ATLNDPRPQLW-QRLQAFNKPLIAAVNGYALGAGCELALLCDIVIAGENARFGLPEITLGIMPGAGGTQRLIRSVGKSLA 153 (255)
T ss_pred hhHHHHHHHHH-HHHHhCCCCEEEEECCEeehHHHHHHHhCCEEEecCCCEEeCchhhcCCCCCccHHHHHHHHhCHHHH
Confidence 11112223455 67899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCCCCHHHHHHcCCcceecCchHHHHHHHHHHHHHHhcChhhhhhhhccCCCCChHHHHHHHHHHHHHHHHhCC
Q 007805 160 IEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAP 239 (589)
Q Consensus 160 ~~l~ltg~~~~a~~A~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (589)
++++++|++++|+||+++||||+|||++++.+++.++++++++.||.+++
T Consensus 154 ~~l~l~g~~~~a~eA~~~Glv~~vv~~~~~~~~a~~~a~~l~~~~~~a~~------------------------------ 203 (255)
T PRK09674 154 SQMVLTGESITAQQAQQAGLVSEVFPPELTLERALQLASKIARHSPLALR------------------------------ 203 (255)
T ss_pred HHHHHcCCccCHHHHHHcCCCcEecChHHHHHHHHHHHHHHHhCCHHHHH------------------------------
Confidence 99999999999999999999999999999999999999999999886543
Q ss_pred CChhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHhHHHHHHHhhhccC
Q 007805 240 NMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSK 294 (589)
Q Consensus 240 ~~~a~~~~~~~~~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~af~~~r~~~~ 294 (589)
.+|+.++.....++.+.++.|.+.+..++.++|+++++++|++||+|++
T Consensus 204 ------~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~e~i~af~~kr~p~~ 252 (255)
T PRK09674 204 ------AAKQALRQSQEVDLQAGLAQERQLFTLLAATEDRHEGISAFLEKRTPDF 252 (255)
T ss_pred ------HHHHHHHHhhcCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHhccCCCCC
Confidence 4567777777788999999999999999999999999999999998775
No 30
>PRK05995 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=5.7e-50 Score=401.17 Aligned_cols=255 Identities=26% Similarity=0.366 Sum_probs=225.0
Q ss_pred CCCCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCCcCCCCchhhhhccCCCcc
Q 007805 1 MAAPRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDV 79 (589)
Q Consensus 1 M~~~~~~~~~~~~~v~~i~l~~p~-~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~ 79 (589)
|+|+.+.++. +++|++||||||+ .|++|.+|+++|.++++.++.|+++|+|||||.|++||+|+|++++.........
T Consensus 1 ~~~~~i~~~~-~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~ 79 (262)
T PRK05995 1 MMYETLEIEQ-RGQVATVTLNRPDVRNAFNETVIAELTAAFRALDADDSVRAVVLAGAGKAFCAGADLNWMKKMAGYSDD 79 (262)
T ss_pred CCCceEEEEe-eCCEEEEEEcCcccccCCCHHHHHHHHHHHHHHhcCCCeEEEEEECCCCccccCcCHHHHhhhcccCch
Confidence 8899999999 8899999999996 6999999999999999999999999999999999999999999987532111100
Q ss_pred ccc--chhHHHHHHHHHHhCCCcEEEEeCCcccchhhHHhhhcCEEEEeCCceEeccccccCCCCChhhhhhHhhhcCHH
Q 007805 80 SLM--PDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLS 157 (589)
Q Consensus 80 ~~~--~~~~~~~~~~~l~~~~kp~iaav~G~a~GgG~~lala~D~~ia~~~a~~~~pe~~~Gl~p~~g~~~~l~~~~G~~ 157 (589)
... .....+++ ..+.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++ +|++++|..
T Consensus 80 ~~~~~~~~~~~~~-~~l~~~~kPvIaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~-~l~~~vg~~ 157 (262)
T PRK05995 80 ENRADARRLADML-RAIYRCPKPVIARVHGDAYAGGMGLVAACDIAVAADHAVFCLSEVRLGLIPATISP-YVIRAMGER 157 (262)
T ss_pred hhhhHHHHHHHHH-HHHHcCCCCEEEEECCEEEhhHHHHHHhCCEEEeeCCCEEeCcccccccCccchHH-HHHHHhCHH
Confidence 111 12233555 67899999999999999999999999999999999999999999999999988765 589999999
Q ss_pred HHHHHHHcCCCCCHHHHHHcCCcceecCchHHHHHHHHHHHHHHhcChhhhhhhhccCCCCChHHHHHHHHHHHHHHHHh
Q 007805 158 KAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKT 237 (589)
Q Consensus 158 ~a~~l~ltg~~~~a~~A~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (589)
+|++|+++|++++|+||+++||||+|||++++.+++.++|+++++.||.+++
T Consensus 158 ~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~a~~---------------------------- 209 (262)
T PRK05995 158 AARRYFLTAERFDAAEALRLGLVHEVVPAEALDAKVDELLAALVANSPQAVR---------------------------- 209 (262)
T ss_pred HHHHHHHcCCccCHHHHHHcCCCCeecCHHHHHHHHHHHHHHHHhCCHHHHH----------------------------
Confidence 9999999999999999999999999999999999999999999999886543
Q ss_pred CCCChhHHHHHHHHHHhhcCCHHHH-HHHHHHHHHHHhCCHHHHhHHHHHHHhhhccC
Q 007805 238 APNMPQHQACLDVIEEGIVHGGYSG-VLKEAKVFKELVMLDTSRGLVHVFFAQRATSK 294 (589)
Q Consensus 238 ~~~~~a~~~~~~~~~~~~~~~~~~~-l~~E~~~~~~~~~s~~~~~~i~af~~~r~~~~ 294 (589)
.+|+.++.....++.+. ++.|...+..++.|+|+++++++|++||++++
T Consensus 210 --------~~K~~l~~~~~~~~~~~~~~~e~~~~~~~~~~~d~~e~~~af~~kr~p~~ 259 (262)
T PRK05995 210 --------AGKRLVRDVAGRPIDAALIADTASRIALIRATEEAREGVAAFLEKRKPAW 259 (262)
T ss_pred --------HHHHHHHhhhcCChhhHHHHHHHHHHHHHhcCHHHHHHHHHHhcCCCCCC
Confidence 44677777767788888 88899999999999999999999999998875
No 31
>PRK08139 enoyl-CoA hydratase; Validated
Probab=100.00 E-value=3.9e-50 Score=402.22 Aligned_cols=255 Identities=23% Similarity=0.340 Sum_probs=225.7
Q ss_pred CCCCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCCcCCCCchhhhhccCCCcc
Q 007805 1 MAAPRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDV 79 (589)
Q Consensus 1 M~~~~~~~~~~~~~v~~i~l~~p~-~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~ 79 (589)
|..+.+.++. +++|++|+||||+ .|++|.+|+.+|.++++.++.|+++|+|||||.|++||+|+|++++.........
T Consensus 8 ~~~~~~~~~~-~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~ 86 (266)
T PRK08139 8 TEAPLLLRED-RDGVATLTLNRPQAFNALSEAMLAALQAALDAIAADPSVRVVVLAAAGKAFCAGHDLKEMRAARGLAYF 86 (266)
T ss_pred ccCCceEEEe-eCCEEEEEeCCcccccCCCHHHHHHHHHHHHHHhcCCCeeEEEEecCCCcceeccCHHHHhcccchhHH
Confidence 3457788998 8899999999996 6999999999999999999999999999999999999999999987542211111
Q ss_pred cccchhHHHHHHHHHHhCCCcEEEEeCCcccchhhHHhhhcCEEEEeCCceEeccccccCCCCChhhhhhHhhhcCHHHH
Q 007805 80 SLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKA 159 (589)
Q Consensus 80 ~~~~~~~~~~~~~~l~~~~kp~iaav~G~a~GgG~~lala~D~~ia~~~a~~~~pe~~~Gl~p~~g~~~~l~~~~G~~~a 159 (589)
..+.....+++ .++.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|+++ +++|+|++|..+|
T Consensus 87 ~~~~~~~~~~~-~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~~-~~~l~r~vG~~~A 164 (266)
T PRK08139 87 RALFARCSRVM-QAIVALPQPVIARVHGIATAAGCQLVASCDLAVAADTARFAVPGVNIGLFCSTP-MVALSRNVPRKQA 164 (266)
T ss_pred HHHHHHHHHHH-HHHHhCCCCEEEEECceeeHHHHHHHHhCCEEEEeCCCEEeCcccCcCCCCCcc-HHHHHHHhCHHHH
Confidence 11122233455 678999999999999999999999999999999999999999999999999765 5789999999999
Q ss_pred HHHHHcCCCCCHHHHHHcCCcceecCchHHHHHHHHHHHHHHhcChhhhhhhhccCCCCChHHHHHHHHHHHHHHHHhCC
Q 007805 160 IEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAP 239 (589)
Q Consensus 160 ~~l~ltg~~~~a~~A~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (589)
++|+++|++++|+||+++||||+|||++++++++.+++++|++.||.+++
T Consensus 165 ~~l~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~------------------------------ 214 (266)
T PRK08139 165 MEMLLTGEFIDAATAREWGLVNRVVPADALDAAVARLAAVIAAKSPAAVR------------------------------ 214 (266)
T ss_pred HHHHHcCCccCHHHHHHcCCccEeeChhHHHHHHHHHHHHHHhCCHHHHH------------------------------
Confidence 99999999999999999999999999999999999999999999886544
Q ss_pred CChhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHhHHHHHHHhhhccC
Q 007805 240 NMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSK 294 (589)
Q Consensus 240 ~~~a~~~~~~~~~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~af~~~r~~~~ 294 (589)
.+|++++.....+++++++.|.+.+..++.++|+++++++|++||++++
T Consensus 215 ------~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~d~~eg~~af~~kr~p~~ 263 (266)
T PRK08139 215 ------IGKEAFYRQAEMPLADAYAYAGDVMAENMMAEDAEEGIDAFLEKRPPEW 263 (266)
T ss_pred ------HHHHHHHHhccCCHHHHHHHHHHHHHHHhcCchHHHHHHHHhcCCCCCC
Confidence 4577888888888999999999999999999999999999999998775
No 32
>PRK05981 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=4.2e-50 Score=403.05 Aligned_cols=256 Identities=24% Similarity=0.330 Sum_probs=228.0
Q ss_pred CCCCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCC-CceEEEEEcCCCCCcCCCCchhhhhccCCC-
Q 007805 1 MAAPRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRD-DVKAIVLTGNGGRFSGGFDINVFQKVHGAG- 77 (589)
Q Consensus 1 M~~~~~~~~~~~~~v~~i~l~~p~-~N~l~~~~~~~l~~~l~~~~~~~-~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~- 77 (589)
|+|+.+.+++ +++|++|+||||+ .|++|.+|+++|.++++.++.|+ ++|+|||||.|++||+|+|++++.......
T Consensus 1 ~~~~~v~~~~-~~~i~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~~v~vvvl~g~g~~F~aG~Dl~~~~~~~~~~~ 79 (266)
T PRK05981 1 MQFKKVTLDF-DGGVAILTLDHPEVMNAVSIDMLGGLAEALDAIEDGKAEVRCLVLTGAGRGFCTGANLQGRGSGGRESD 79 (266)
T ss_pred CCcceEEEEe-ECCEEEEEecCcccccCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCcccccCHHhhhccccccc
Confidence 8999999999 7899999999996 79999999999999999999876 499999999999999999999875422111
Q ss_pred ---c-ccccchhHHHHHHHHHHhCCCcEEEEeCCcccchhhHHhhhcCEEEEeCCceEeccccccCCCCChhhhhhHhhh
Q 007805 78 ---D-VSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRL 153 (589)
Q Consensus 78 ---~-~~~~~~~~~~~~~~~l~~~~kp~iaav~G~a~GgG~~lala~D~~ia~~~a~~~~pe~~~Gl~p~~g~~~~l~~~ 153 (589)
. ...+......++ .++.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|+++
T Consensus 80 ~~~~~~~~~~~~~~~~~-~~l~~~~kpvIaav~G~a~GgG~~lalacD~~ia~~~a~f~~~e~~lG~~p~~g~~~~l~~~ 158 (266)
T PRK05981 80 SGGDAGAALETAYHPFL-RRLRNLPCPIVTAVNGPAAGVGMSFALMGDLILCARSAYFLQAFRRIGLVPDGGSTWLLPRL 158 (266)
T ss_pred ccchhHHHHHHHHHHHH-HHHHhCCCCEEEEECCEeehHHHHHHHhCCEEEecCCCEEechHhhcCCCCCccHHHHHHHH
Confidence 0 011112233455 67899999999999999999999999999999999999999999999999999999999999
Q ss_pred cCHHHHHHHHHcCCCCCHHHHHHcCCcceecCchHHHHHHHHHHHHHHhcChhhhhhhhccCCCCChHHHHHHHHHHHHH
Q 007805 154 VGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQ 233 (589)
Q Consensus 154 ~G~~~a~~l~ltg~~~~a~~A~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (589)
+|..++++|+++|++++|+||+++||||+|||++++++++.++++++++.||.+++
T Consensus 159 vg~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~~~~~a~~~a~~l~~~~~~a~~------------------------ 214 (266)
T PRK05981 159 VGKARAMELSLLGEKLPAETALQWGLVNRVVDDAELMAEAMKLAHELANGPTVALG------------------------ 214 (266)
T ss_pred hHHHHHHHHHHhCCCcCHHHHHHcCCceEeeCHhHHHHHHHHHHHHHHcCCHHHHH------------------------
Confidence 99999999999999999999999999999999999999999999999998875543
Q ss_pred HHHhCCCChhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHhHHHHHHHhhhccC
Q 007805 234 AKKTAPNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSK 294 (589)
Q Consensus 234 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~af~~~r~~~~ 294 (589)
.+|++++.....++.++++.|...+..++.|+|+++++.+|++||++++
T Consensus 215 ------------~~K~~~~~~~~~~~~~~~~~e~~~~~~~~~s~d~~e~~~af~~kr~~~~ 263 (266)
T PRK05981 215 ------------LIRKLYWDSPENDFEEQLNLEREAQRIAGKTEDFKEGVGAFLQKRPAQF 263 (266)
T ss_pred ------------HHHHHHHHhhhcCHHHHHHHHHHHHHHHhcChhHHHHHHHHhcCCCCCC
Confidence 4467777777778999999999999999999999999999999998875
No 33
>PRK06563 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=4.8e-50 Score=399.91 Aligned_cols=251 Identities=24% Similarity=0.344 Sum_probs=221.6
Q ss_pred EEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCCcCCCCchhhhhccCCCcccccch
Q 007805 6 VTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPD 84 (589)
Q Consensus 6 ~~~~~~~~~v~~i~l~~p~-~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~ 84 (589)
|.++. +++|++||||||+ .|++|.+|+++|.++++++++|+++|+|||||.|++||+|+|++++....... ...+..
T Consensus 1 ~~~~~-~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vrvvvl~g~g~~F~aG~Dl~~~~~~~~~~-~~~~~~ 78 (255)
T PRK06563 1 VSRER-RGHVLLIGLDRPAKRNAFDSAMLDDLALALGEYEADDELRVAVLFAHGEHFTAGLDLADVAPKLAAG-GFPFPE 78 (255)
T ss_pred CeEEE-ECCEEEEEECCcccccCCCHHHHHHHHHHHHHHhhCCCcEEEEEECCCCCCcCCcCHHHHhhccccc-hhhhhh
Confidence 35677 7899999999996 79999999999999999999999999999999999999999999875421111 111111
Q ss_pred hHHHHHHHHHHhCCCcEEEEeCCcccchhhHHhhhcCEEEEeCCceEeccccccCCCCChhhhhhHhhhcCHHHHHHHHH
Q 007805 85 VSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMML 164 (589)
Q Consensus 85 ~~~~~~~~~l~~~~kp~iaav~G~a~GgG~~lala~D~~ia~~~a~~~~pe~~~Gl~p~~g~~~~l~~~~G~~~a~~l~l 164 (589)
...+.+...+.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|++++|..+|+++++
T Consensus 79 ~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lal~cD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a~~l~l 158 (255)
T PRK06563 79 GGIDPWGTVGRRLSKPLVVAVQGYCLTLGIELMLAADIVVAADNTRFAQLEVQRGILPFGGATLRFPQAAGWGNAMRYLL 158 (255)
T ss_pred hhhHHHHHHHhcCCCCEEEEEcCeeecHHHHHHHhCCEEEecCCCEEeChhhhcCCCCCccHHHHHHHHhhHHHHHHHHH
Confidence 12233323578999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCHHHHHHcCCcceecCchHHHHHHHHHHHHHHhcChhhhhhhhccCCCCChHHHHHHHHHHHHHHHHhCCCChhH
Q 007805 165 LSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPNMPQH 244 (589)
Q Consensus 165 tg~~~~a~~A~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 244 (589)
||++++|+||+++||||+|||++++.+++.++++++++.||.+++
T Consensus 159 tg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~a~~----------------------------------- 203 (255)
T PRK06563 159 TGDEFDAQEALRLGLVQEVVPPGEQLERAIELAERIARAAPLGVQ----------------------------------- 203 (255)
T ss_pred cCCCcCHHHHHHcCCCcEeeCHHHHHHHHHHHHHHHHhcCHHHHH-----------------------------------
Confidence 999999999999999999999999999999999999999886543
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHhHHHHHHHhhhccC
Q 007805 245 QACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSK 294 (589)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~af~~~r~~~~ 294 (589)
.+|++++.....++.++++.|...+..++.++|+++++++|++||+|++
T Consensus 204 -~~K~~~~~~~~~~~~~~~~~e~~~~~~~~~~~d~~eg~~af~~kr~p~~ 252 (255)
T PRK06563 204 -ATLASARAAVREGEAAAAAQLPPELRPLFTSEDAKEGVQAFLERRPARF 252 (255)
T ss_pred -HHHHHHHHhhcCCHHHHHHHHHHHHHHHhcCchHHHHHHHHhcCCCCCC
Confidence 4467777777778999999999999999999999999999999998774
No 34
>PRK05674 gamma-carboxygeranoyl-CoA hydratase; Validated
Probab=100.00 E-value=5.9e-50 Score=400.68 Aligned_cols=256 Identities=20% Similarity=0.271 Sum_probs=222.3
Q ss_pred CC-CCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCCcCCCCchhhhhccCCCc
Q 007805 1 MA-APRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGD 78 (589)
Q Consensus 1 M~-~~~~~~~~~~~~v~~i~l~~p~-~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~ 78 (589)
|+ |+++.++.++++|++|+||||+ .|++|.+|+.+|.++++.++.|+++|+|||||.|++||+|+|++++........
T Consensus 1 ~~~~~~l~~~~~~~~v~~itlnrp~~~Nal~~~~~~el~~al~~~~~d~~vr~vVl~g~g~~F~aG~Dl~~~~~~~~~~~ 80 (265)
T PRK05674 1 MSDFQTIELIRDPRGFATLWLSRADKNNAFNAQMIRELILALDQVQSDASLRFLLLRGRGRHFSAGADLAWMQQSADLDY 80 (265)
T ss_pred CCCcceEEEEEcCCCEEEEEecCcccccCCCHHHHHHHHHHHHHHhcCCCeeEEEEECCCCCcccCcCHHHHhhcccccc
Confidence 44 8999999844789999999995 799999999999999999999999999999999999999999998753211110
Q ss_pred ccc--cchhHHHHHHHHHHhCCCcEEEEeCCcccchhhHHhhhcCEEEEeCCceEeccccccCCCCChhhhhhHhhhcCH
Q 007805 79 VSL--MPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGL 156 (589)
Q Consensus 79 ~~~--~~~~~~~~~~~~l~~~~kp~iaav~G~a~GgG~~lala~D~~ia~~~a~~~~pe~~~Gl~p~~g~~~~l~~~~G~ 156 (589)
... ......+++ ..+.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++ ++++++|.
T Consensus 81 ~~~~~~~~~~~~~~-~~l~~~~kPvIaaV~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gi~p~~~~~-~l~~~vG~ 158 (265)
T PRK05674 81 NTNLDDARELAELM-YNLYRLKIPTLAVVQGAAFGGALGLISCCDMAIGADDAQFCLSEVRIGLAPAVISP-FVVKAIGE 158 (265)
T ss_pred hhhhHHHHHHHHHH-HHHHcCCCCEEEEEcCEEEechhhHhhhcCEEEEeCCCEEeCcccccCCCcchhHH-HHHHHhCH
Confidence 011 111233455 67899999999999999999999999999999999999999999999999988765 58999999
Q ss_pred HHHHHHHHcCCCCCHHHHHHcCCcceecCchHHHHHHHHHHHHHHhcChhhhhhhhccCCCCChHHHHHHHHHHHHHHHH
Q 007805 157 SKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKK 236 (589)
Q Consensus 157 ~~a~~l~ltg~~~~a~~A~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (589)
.+++++++||++++|+||+++||||+|||++++.+++.++++++++.||.+++
T Consensus 159 ~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~p~a~~--------------------------- 211 (265)
T PRK05674 159 RAARRYALTAERFDGRRARELGLLAESYPAAELEAQVEAWIANLLLNSPQALR--------------------------- 211 (265)
T ss_pred HHHHHHHHhCcccCHHHHHHCCCcceecCHHHHHHHHHHHHHHHHhcCHHHHH---------------------------
Confidence 99999999999999999999999999999999999999999999999986554
Q ss_pred hCCCChhHHHHHHHHHHhhcCCHHHHHHH-HHHHHHHHhCCHHHHhHHHHHHHhhhccC
Q 007805 237 TAPNMPQHQACLDVIEEGIVHGGYSGVLK-EAKVFKELVMLDTSRGLVHVFFAQRATSK 294 (589)
Q Consensus 237 ~~~~~~a~~~~~~~~~~~~~~~~~~~l~~-E~~~~~~~~~s~~~~~~i~af~~~r~~~~ 294 (589)
.+|+.++.....++.+++.. |.+.+..++.|+|+++++++|++||++++
T Consensus 212 ---------~~K~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~e~~~af~~kr~p~~ 261 (265)
T PRK05674 212 ---------ASKDLLREVGDGELSPALRRYCENAIARIRVSAEGQEGLRAFLEKRTPAW 261 (265)
T ss_pred ---------HHHHHHHHhhccChhHHHHHHHHHHHHHHhcCHHHHHHHHHHHccCCCCC
Confidence 45677777777778888765 45788889999999999999999998875
No 35
>PRK09245 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=5.3e-50 Score=402.33 Aligned_cols=255 Identities=27% Similarity=0.364 Sum_probs=225.9
Q ss_pred CCCCcEEEEEecCcEEEEEeCCCC-CCCCCH-HHHHHHHHHHHHHhcCCCceEEEEEcCCCCCcCCCCchhhhhccCC--
Q 007805 1 MAAPRVTMEVGNDGVAIITLINPP-VNALAI-PIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGA-- 76 (589)
Q Consensus 1 M~~~~~~~~~~~~~v~~i~l~~p~-~N~l~~-~~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~-- 76 (589)
|| +.+.+++ +++|++||||||+ .|++|. +|+++|.+++++++.|+++|+|||+|.|++||+|.|++++......
T Consensus 1 m~-~~v~~~~-~~~v~~itlnrp~~~Nal~~~~~~~~l~~~l~~~~~d~~vr~vVl~g~g~~F~aG~Dl~~~~~~~~~~~ 78 (266)
T PRK09245 1 MT-DFLLVER-DGHIVTLTMNRPETRNALSDNDAVDALVAACAAINADRSVRAVILTGAGTAFSSGGNVKDMRARVGAFG 78 (266)
T ss_pred CC-CceEEEE-ECCEEEEEECCcccccCCChHHHHHHHHHHHHHHhcCCCceEEEEECCCCCcccCcCHHHHhhcccccc
Confidence 66 5688998 7899999999996 699995 9999999999999999999999999999999999999987542111
Q ss_pred -Ccc---cccchhHHHHHHHHHHhCCCcEEEEeCCcccchhhHHhhhcCEEEEeCCceEeccccccCCCCChhhhhhHhh
Q 007805 77 -GDV---SLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPR 152 (589)
Q Consensus 77 -~~~---~~~~~~~~~~~~~~l~~~~kp~iaav~G~a~GgG~~lala~D~~ia~~~a~~~~pe~~~Gl~p~~g~~~~l~~ 152 (589)
... ..+......++ ..+.++|||+||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++
T Consensus 79 ~~~~~~~~~~~~~~~~~~-~~l~~~~kpvIaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~G~~p~~g~~~~l~~ 157 (266)
T PRK09245 79 GSPADIRQGYRHGIQRIP-LALYNLEVPVIAAVNGPAIGAGCDLACMCDIRIASETARFAESFVKLGLIPGDGGAWLLPR 157 (266)
T ss_pred ccchhHHHHHHHHHHHHH-HHHHcCCCCEEEEECCEeecHHHHHHHhCCEEEecCCCEEcccccccCcCCCcchhhhHHH
Confidence 000 01111123445 6788999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCHHHHHHHHHcCCCCCHHHHHHcCCcceecCchHHHHHHHHHHHHHHhcChhhhhhhhccCCCCChHHHHHHHHHHHH
Q 007805 153 LVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARL 232 (589)
Q Consensus 153 ~~G~~~a~~l~ltg~~~~a~~A~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (589)
++|..+|++|+++|++++|+||+++||||+|||++++++++.+++++|++.||.+++
T Consensus 158 ~vG~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~l~~~~~~a~~----------------------- 214 (266)
T PRK09245 158 IIGMARAAEMAFTGDAIDAATALEWGLVSRVVPADQLLPAARALAERIAANPPHALR----------------------- 214 (266)
T ss_pred HhhHHHHHHHHHcCCCcCHHHHHHcCCcceecCHHHHHHHHHHHHHHHHhCCHHHHH-----------------------
Confidence 999999999999999999999999999999999999999999999999999986554
Q ss_pred HHHHhCCCChhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHhHHHHHHHhhhccC
Q 007805 233 QAKKTAPNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSK 294 (589)
Q Consensus 233 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~af~~~r~~~~ 294 (589)
.+|++++.....++++.++.|.+.+..++.++|+++++++|++||+|.+
T Consensus 215 -------------~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~d~~eg~~af~~kr~p~~ 263 (266)
T PRK09245 215 -------------LTKRLLREGQHASLDTLLELSAAYQALAHHTADHREAVDAFLEKRPPVF 263 (266)
T ss_pred -------------HHHHHHHHhhcCCHHHHHHHHHHHHHHHhcCHhHHHHHHHHHcCCCCCC
Confidence 4567777777778899999999999999999999999999999998875
No 36
>PRK07657 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=5.7e-50 Score=400.50 Aligned_cols=255 Identities=30% Similarity=0.492 Sum_probs=227.5
Q ss_pred CCCCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCC-CCcCCCCchhhhhccCCCc
Q 007805 1 MAAPRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGG-RFSGGFDINVFQKVHGAGD 78 (589)
Q Consensus 1 M~~~~~~~~~~~~~v~~i~l~~p~-~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~-~F~aG~Dl~~~~~~~~~~~ 78 (589)
|+ +++.+++.+++|++|+||||+ .|++|.+|+.+|.+++++++.|+++|+|||||.|+ +||+|.|++++..... ..
T Consensus 1 ~~-~~v~~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~v~~vVl~g~g~~~F~aG~Dl~~~~~~~~-~~ 78 (260)
T PRK07657 1 ML-QNISVDYVTPHVVKITLNRPRAANALSLALLEELQNILTQINEEANVRVVILTGAGEKAFCAGADLKERAGMNE-EQ 78 (260)
T ss_pred CC-ceEEEEEccCCEEEEEEeCCcccCCCCHHHHHHHHHHHHHHHhCCCeEEEEEecCCCCceEcCcChHhhhcCCh-hh
Confidence 76 588888646899999999996 79999999999999999999999999999999994 9999999998753211 11
Q ss_pred ccccchhHHHHHHHHHHhCCCcEEEEeCCcccchhhHHhhhcCEEEEeCCceEeccccccCCCCChhhhhhHhhhcCHHH
Q 007805 79 VSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSK 158 (589)
Q Consensus 79 ~~~~~~~~~~~~~~~l~~~~kp~iaav~G~a~GgG~~lala~D~~ia~~~a~~~~pe~~~Gl~p~~g~~~~l~~~~G~~~ 158 (589)
...+......++ ..+.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|..+
T Consensus 79 ~~~~~~~~~~~~-~~l~~~~kPvIaav~G~a~GgG~~lal~cD~~ia~~~a~f~~pe~~~G~~p~~g~~~~l~~~vG~~~ 157 (260)
T PRK07657 79 VRHAVSLIRTTM-EMVEQLPQPVIAAINGIALGGGLELALACDFRIAAESASLGLTETTLAIIPGAGGTQRLPRLIGVGR 157 (260)
T ss_pred HHHHHHHHHHHH-HHHHhCCCCEEEEEcCEeechHHHHHHhCCEEEeeCCCEEcCchhccCcCCCccHHHHHHHHhCHHH
Confidence 112222334555 6789999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCCCCHHHHHHcCCcceecCchHHHHHHHHHHHHHHhcChhhhhhhhccCCCCChHHHHHHHHHHHHHHHHhC
Q 007805 159 AIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTA 238 (589)
Q Consensus 159 a~~l~ltg~~~~a~~A~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (589)
+++++++|++++|+||+++||||++||++++++++.++++++++.||.+++
T Consensus 158 a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~l~~~~~~a~~----------------------------- 208 (260)
T PRK07657 158 AKELIYTGRRISAQEAKEIGLVEFVVPAHLLEEKAIEIAEKIASNGPIAVR----------------------------- 208 (260)
T ss_pred HHHHHHhCCCCCHHHHHHcCCCCeecCHHHHHHHHHHHHHHHHhCCHHHHH-----------------------------
Confidence 999999999999999999999999999999999999999999999886543
Q ss_pred CCChhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHhHHHHHHHhhhccC
Q 007805 239 PNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSK 294 (589)
Q Consensus 239 ~~~~a~~~~~~~~~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~af~~~r~~~~ 294 (589)
.+|+.++.....+++++++.|.+.+..++.|+|+++++++|++||++++
T Consensus 209 -------~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~e~~~af~~~r~~~~ 257 (260)
T PRK07657 209 -------QAKEAISNGIQVDLHTGLQIEKQAYEGTIPTKDRLEGLQAFKEKRKPMY 257 (260)
T ss_pred -------HHHHHHHHhccCCHHHHHHHHHHHHHHHhcCHhHHHHHHHHhcCCCCCC
Confidence 4567788777788999999999999999999999999999999998775
No 37
>PRK06495 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=6.3e-50 Score=399.27 Aligned_cols=253 Identities=32% Similarity=0.472 Sum_probs=225.1
Q ss_pred CCCCcEEEEEecCcEEEEEeCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCCcCCCCchhhhhccCC-Ccc
Q 007805 1 MAAPRVTMEVGNDGVAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGA-GDV 79 (589)
Q Consensus 1 M~~~~~~~~~~~~~v~~i~l~~p~~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~-~~~ 79 (589)
|+|+.+.+++ +++|++||||||+.|++|.+|+.+|.++++.+++|+++|+|||||.|++||+|.|++++...... ...
T Consensus 1 ~~~~~i~~~~-~~~v~~itlnrp~~Nal~~~~~~~l~~al~~~~~d~~vr~vVl~g~g~~FcaG~Dl~~~~~~~~~~~~~ 79 (257)
T PRK06495 1 MMMSQLKLEV-SDHVAVVTLDNPPVNALSRELRDELIAVFDEISERPDVRVVVLTGAGKVFCAGADLKGRPDVIKGPGDL 79 (257)
T ss_pred CCcceEEEEe-eCCEEEEEECCCccccCCHHHHHHHHHHHHHHhhCCCceEEEEECCCCCcccCcCHHhHhhccCCchhH
Confidence 7889999998 88999999999989999999999999999999999999999999999999999999987542111 111
Q ss_pred cccchhHHHHHHHHHHhCCCcEEEEeCCcccchhhHHhhhcCEEEEeCCceEeccccccCCCCChhhhhhHhhhcCHHHH
Q 007805 80 SLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKA 159 (589)
Q Consensus 80 ~~~~~~~~~~~~~~l~~~~kp~iaav~G~a~GgG~~lala~D~~ia~~~a~~~~pe~~~Gl~p~~g~~~~l~~~~G~~~a 159 (589)
........+++ .++.++|||+||+|||+|+|||++|+++||+||++++++|++||+++|++ |++++|++++|..+|
T Consensus 80 ~~~~~~~~~~~-~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~---~~~~~l~~~~g~~~a 155 (257)
T PRK06495 80 RAHNRRTRECF-HAIRECAKPVIAAVNGPALGAGLGLVASCDIIVASENAVFGLPEIDVGLA---GGGKHAMRLFGHSLT 155 (257)
T ss_pred HHHHHHHHHHH-HHHHhCCCCEEEEECCeeehhHHHHHHhCCEEEecCCCEeeChhhccCcc---ccHHHHHHHhCHHHH
Confidence 11112233455 67899999999999999999999999999999999999999999999996 456789999999999
Q ss_pred HHHHHcCCCCCHHHHHHcCCcceecCchHHHHHHHHHHHHHHhcChhhhhhhhccCCCCChHHHHHHHHHHHHHHHHhCC
Q 007805 160 IEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAP 239 (589)
Q Consensus 160 ~~l~ltg~~~~a~~A~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (589)
++|+++|++++|+||+++||||++||++++.+++.++++++++.||.+++
T Consensus 156 ~~lll~g~~~~a~eA~~~GLv~~vv~~~~~~~~a~~~a~~l~~~~~~a~~------------------------------ 205 (257)
T PRK06495 156 RRMMLTGYRVPAAELYRRGVIEACLPPEELMPEAMEIAREIASKSPLATR------------------------------ 205 (257)
T ss_pred HHHHHcCCeeCHHHHHHcCCcceecCHHHHHHHHHHHHHHHHhCCHHHHH------------------------------
Confidence 99999999999999999999999999999999999999999999987554
Q ss_pred CChhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHhHHHHHHHhhhccC
Q 007805 240 NMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSK 294 (589)
Q Consensus 240 ~~~a~~~~~~~~~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~af~~~r~~~~ 294 (589)
.+|++++.....+++++++.|...+..++.|+|+++++++|++||+|++
T Consensus 206 ------~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~s~d~~egi~af~~kr~p~~ 254 (257)
T PRK06495 206 ------LAKDALNTIENMSLRDGYRYEQDITAKLAKTEDAKEAQRAFLEKRPPVF 254 (257)
T ss_pred ------HHHHHHHHHhcCCHHHHHHHHHHHHHHHhcChHHHHHHHHHhccCCCCC
Confidence 4466777777778999999999999999999999999999999999885
No 38
>PRK06494 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=7.8e-50 Score=399.02 Aligned_cols=252 Identities=31% Similarity=0.436 Sum_probs=223.7
Q ss_pred CCCCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCC-CCCcCCCCchhhhhccCCCc
Q 007805 1 MAAPRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNG-GRFSGGFDINVFQKVHGAGD 78 (589)
Q Consensus 1 M~~~~~~~~~~~~~v~~i~l~~p~-~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g-~~F~aG~Dl~~~~~~~~~~~ 78 (589)
|+|+.+.+++ +++|++|+||||+ .|++|.+|+.+|.++++.++.|+++|+|||||.| ++||+|+|++++.......
T Consensus 1 ~~~~~v~~~~-~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~~F~aG~Dl~~~~~~~~~~- 78 (259)
T PRK06494 1 MALPFSTVER-KGHVTIVTLNRPEVMNALHLDAHFELEEVFDDFAADPEQWVAIVTGAGDKAFSAGNDLKEQAAGGKRG- 78 (259)
T ss_pred CCCceeEEEe-ECCEEEEEEcCccccCCCCHHHHHHHHHHHHHHhhCCCcEEEEEEcCCCCceeccccHHhHhhcCcch-
Confidence 8899999998 7899999999997 6999999999999999999999999999999998 6999999999875422111
Q ss_pred ccccchhHHHHHHHHHHhCCCcEEEEeCCcccchhhHHhhhcCEEEEeCCceEeccccccCCCCChhhhhhHhhhcCHHH
Q 007805 79 VSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSK 158 (589)
Q Consensus 79 ~~~~~~~~~~~~~~~l~~~~kp~iaav~G~a~GgG~~lala~D~~ia~~~a~~~~pe~~~Gl~p~~g~~~~l~~~~G~~~ 158 (589)
........+. . +.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|..+
T Consensus 79 --~~~~~~~~~~-~-~~~~~kPvIaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vg~~~ 154 (259)
T PRK06494 79 --WPESGFGGLT-S-RFDLDKPIIAAVNGVAMGGGFELALACDLIVAAENATFALPEPRVGLAALAGGLHRLPRQIGLKR 154 (259)
T ss_pred --hhhHHHHHHH-H-HhcCCCCEEEEECCEEecHHHHHHHhCCEEEEeCCCEEeCcccccCCCCCchHHHHHHHHcCHHH
Confidence 0011122222 3 56899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCCCCHHHHHHcCCcceecCchHHHHHHHHHHHHHHhcChhhhhhhhccCCCCChHHHHHHHHHHHHHHHHhC
Q 007805 159 AIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTA 238 (589)
Q Consensus 159 a~~l~ltg~~~~a~~A~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (589)
|++|++||++++|+||+++||||++||++++++++.++++++++.||.+++
T Consensus 155 a~~lll~g~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~----------------------------- 205 (259)
T PRK06494 155 AMGMILTGRRVTAREGLELGFVNEVVPAGELLAAAERWADDILACSPLSIR----------------------------- 205 (259)
T ss_pred HHHHHHcCCcCCHHHHHHcCCCcEecCHhHHHHHHHHHHHHHHhcCHHHHH-----------------------------
Confidence 999999999999999999999999999999999999999999999986543
Q ss_pred CCChhHHHHHHHHHHhhcCCHHHHHHHH--HHHHHHHhCCHHHHhHHHHHHHhhhccC
Q 007805 239 PNMPQHQACLDVIEEGIVHGGYSGVLKE--AKVFKELVMLDTSRGLVHVFFAQRATSK 294 (589)
Q Consensus 239 ~~~~a~~~~~~~~~~~~~~~~~~~l~~E--~~~~~~~~~s~~~~~~i~af~~~r~~~~ 294 (589)
.+|++++.....+++++++.| ...+..++.++|+++++.+|++||++++
T Consensus 206 -------~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~d~~eg~~af~~kr~p~~ 256 (259)
T PRK06494 206 -------ASKQAVYRGLEVSLEEAITAQRDYPAVEARRASQDYIEGPKAFAEKRPPRW 256 (259)
T ss_pred -------HHHHHHHHhccCCHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHccCCCCC
Confidence 456777777777899999999 5678999999999999999999988775
No 39
>PRK08138 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=1.2e-49 Score=398.23 Aligned_cols=251 Identities=32% Similarity=0.469 Sum_probs=225.1
Q ss_pred CcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCCcCCCCchhhhhccCCCccccc
Q 007805 4 PRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLM 82 (589)
Q Consensus 4 ~~~~~~~~~~~v~~i~l~~p~-~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~ 82 (589)
+++.++.++++|++|+||||+ .|++|.+|+.+|.++++.+++|+++|+|||||.|++||+|+|++++..... ...+
T Consensus 7 ~~~~~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~vr~vvl~g~g~~F~aG~Dl~~~~~~~~---~~~~ 83 (261)
T PRK08138 7 DVVLLERPADGVALLRLNRPEARNALNMEVRQQLAEHFTELSEDPDIRAIVLTGGEKVFAAGADIKEFATAGA---IEMY 83 (261)
T ss_pred CCEEEEEccCCEEEEEEcCCcccCCCCHHHHHHHHHHHHHHhhCCCeeEEEEECCCCCeeCCcCHHHHhccch---hHHH
Confidence 567888756889999999996 699999999999999999999999999999999999999999998754211 1112
Q ss_pred chhHHHHHHHHHHhCCCcEEEEeCCcccchhhHHhhhcCEEEEeCCceEeccccccCCCCChhhhhhHhhhcCHHHHHHH
Q 007805 83 PDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEM 162 (589)
Q Consensus 83 ~~~~~~~~~~~l~~~~kp~iaav~G~a~GgG~~lala~D~~ia~~~a~~~~pe~~~Gl~p~~g~~~~l~~~~G~~~a~~l 162 (589)
.....+++ ..+.++|||+||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|..++++|
T Consensus 84 ~~~~~~~~-~~l~~~~kPvIaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a~~l 162 (261)
T PRK08138 84 LRHTERYW-EAIAQCPKPVIAAVNGYALGGGCELAMHADIIVAGESASFGQPEIKVGLMPGAGGTQRLVRAVGKFKAMRM 162 (261)
T ss_pred HHHHHHHH-HHHHhCCCCEEEEEccEEEcHHHHHHHhCCEEEecCCCEeeCcccccccCCCCcHHHHHHHHhCHHHHHHH
Confidence 22234555 67899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCCCCHHHHHHcCCcceecCchHHHHHHHHHHHHHHhcChhhhhhhhccCCCCChHHHHHHHHHHHHHHHHhCCCCh
Q 007805 163 MLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPNMP 242 (589)
Q Consensus 163 ~ltg~~~~a~~A~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (589)
+++|++++|+||+++||||+|||++++.+++.++++++++.||.+++
T Consensus 163 ~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~l~~~~~~a~~--------------------------------- 209 (261)
T PRK08138 163 ALTGCMVPAPEALAIGLVSEVVEDEQTLPRALELAREIARMPPLALA--------------------------------- 209 (261)
T ss_pred HHcCCCCCHHHHHHCCCCcEecCchHHHHHHHHHHHHHHhCCHHHHH---------------------------------
Confidence 99999999999999999999999999999999999999988875433
Q ss_pred hHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHhHHHHHHHhhhccC
Q 007805 243 QHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSK 294 (589)
Q Consensus 243 a~~~~~~~~~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~af~~~r~~~~ 294 (589)
.+|++++.....+++++++.|.+.+..++.++|+++++++|++||++++
T Consensus 210 ---~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~i~af~~kr~~~~ 258 (261)
T PRK08138 210 ---QIKEVVLAGADAPLDAALALERKAFQLLFDSEDQKEGMDAFLEKRKPAY 258 (261)
T ss_pred ---HHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHhcCCCCCC
Confidence 4577788777788999999999999999999999999999999998875
No 40
>PRK07468 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=9.7e-50 Score=399.03 Aligned_cols=256 Identities=23% Similarity=0.317 Sum_probs=223.2
Q ss_pred CCCCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCCcCCCCchhhhhccCCCcc
Q 007805 1 MAAPRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDV 79 (589)
Q Consensus 1 M~~~~~~~~~~~~~v~~i~l~~p~-~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~ 79 (589)
|+|+.+.+++++++|++|+||||+ .|++|.+|+++|.++++.++.|+++|+|||||.|++||+|+|++++.........
T Consensus 1 ~~~~~~~~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~ 80 (262)
T PRK07468 1 MMFETIRIAVDARGVATLTLNRPEKHNALSARMIAELTTAARRLAADAAVRVVVLTGAGKSFCAGGDLGWMRAQMTADRA 80 (262)
T ss_pred CCcceEEEEEcCCcEEEEEEcCcccccCCCHHHHHHHHHHHHHHhcCCCeEEEEEECCCCcccCCcCHHHHHhhcccchh
Confidence 778889999844689999999996 7999999999999999999999999999999999999999999987532111110
Q ss_pred c--ccchhHHHHHHHHHHhCCCcEEEEeCCcccchhhHHhhhcCEEEEeCCceEeccccccCCCCChhhhhhHhhhcCHH
Q 007805 80 S--LMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLS 157 (589)
Q Consensus 80 ~--~~~~~~~~~~~~~l~~~~kp~iaav~G~a~GgG~~lala~D~~ia~~~a~~~~pe~~~Gl~p~~g~~~~l~~~~G~~ 157 (589)
. ........++ +.+.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|+++++ +++|..
T Consensus 81 ~~~~~~~~~~~~~-~~l~~~~kPvIaav~G~a~GgG~~lala~D~ria~~~a~f~~pe~~~Gl~p~~g~~~~~-~~vG~~ 158 (262)
T PRK07468 81 TRIEEARRLAMML-KALNDLPKPLIGRIQGQAFGGGVGLISVCDVAIAVSGARFGLTETRLGLIPATISPYVV-ARMGEA 158 (262)
T ss_pred hHHHHHHHHHHHH-HHHHcCCCCEEEEECCEEEhHHHHHHHhCCEEEEeCCCEEeCchhccCCCcccchhhHH-hhccHH
Confidence 0 1112233455 67899999999999999999999999999999999999999999999999999998855 559999
Q ss_pred HHHHHHHcCCCCCHHHHHHcCCcceecCchHHHHHHHHHHHHHHhcChhhhhhhhccCCCCChHHHHHHHHHHHHHHHHh
Q 007805 158 KAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKT 237 (589)
Q Consensus 158 ~a~~l~ltg~~~~a~~A~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (589)
++++|+++|++++|+||+++||||+|||++++.+++.++++++++.||.+++
T Consensus 159 ~a~~lll~g~~~~a~eA~~~Glv~~v~~~~~l~~~~~~~a~~l~~~~~~a~~---------------------------- 210 (262)
T PRK07468 159 NARRVFMSARLFDAEEAVRLGLLSRVVPAERLDAAVEAEVTPYLSCAPGAVA---------------------------- 210 (262)
T ss_pred HHHHHHHhCCccCHHHHHHcCCcceecCHHHHHHHHHHHHHHHHhcCHHHHH----------------------------
Confidence 9999999999999999999999999999999999999999999999886544
Q ss_pred CCCChhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHhHHHHHHHhhhccC
Q 007805 238 APNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSK 294 (589)
Q Consensus 238 ~~~~~a~~~~~~~~~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~af~~~r~~~~ 294 (589)
.+|++++......+++.++.|...+..++.|+|+++++++|++||++++
T Consensus 211 --------~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~s~d~~e~~~af~~kr~~~~ 259 (262)
T PRK07468 211 --------AAKALVRALGAPIDEAVIDATIEALADTWETEEAREGIAAFFDKRAPAW 259 (262)
T ss_pred --------HHHHHHHhhhccChHHHHHHHHHHHHHHhcCHHHHHHHHHHHcCCCCCC
Confidence 4466777665566788899999999999999999999999999999875
No 41
>PRK03580 carnitinyl-CoA dehydratase; Provisional
Probab=100.00 E-value=1.2e-49 Score=398.13 Aligned_cols=253 Identities=24% Similarity=0.347 Sum_probs=223.5
Q ss_pred CCCCcEEEEEecCcEEEEEeCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCC-CCCcCCCCchhhhhccCCCcc
Q 007805 1 MAAPRVTMEVGNDGVAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNG-GRFSGGFDINVFQKVHGAGDV 79 (589)
Q Consensus 1 M~~~~~~~~~~~~~v~~i~l~~p~~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g-~~F~aG~Dl~~~~~~~~~~~~ 79 (589)
|+ +.+.+++ +++|++|+||||+.|++|.+|+++|.++++.++.|+++|+|||||.| ++||+|+|++++.......
T Consensus 1 ~~-~~i~~~~-~~~v~~itlnrp~~Nal~~~~~~~l~~~l~~~~~d~~vr~vvl~g~g~~~F~aG~Dl~~~~~~~~~~-- 76 (261)
T PRK03580 1 MS-ESLHTTR-NGSILEITLDRPKANAIDAKTSFAMGEVFLNFRDDPELRVAIITGAGEKFFSAGWDLKAAAEGEAPD-- 76 (261)
T ss_pred CC-ceEEEEE-ECCEEEEEECCccccCCCHHHHHHHHHHHHHHHhCCCcEEEEEEeCCCCceecccCHHHHhccCcch--
Confidence 66 4688888 78999999999988999999999999999999999999999999998 6999999999875422111
Q ss_pred cccchhHHHHHHHHHHhCCCcEEEEeCCcccchhhHHhhhcCEEEEeCCceEeccccccCCCCChhhhhhHhhhcCHHHH
Q 007805 80 SLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKA 159 (589)
Q Consensus 80 ~~~~~~~~~~~~~~l~~~~kp~iaav~G~a~GgG~~lala~D~~ia~~~a~~~~pe~~~Gl~p~~g~~~~l~~~~G~~~a 159 (589)
..+.......+ ..+..+||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|..++
T Consensus 77 ~~~~~~~~~~~-~~l~~~~kPvIaav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~G~~p~~g~~~~l~~~vg~~~a 155 (261)
T PRK03580 77 ADFGPGGFAGL-TEIFDLDKPVIAAVNGYAFGGGFELALAADFIVCADNASFALPEAKLGIVPDSGGVLRLPKRLPPAIA 155 (261)
T ss_pred hhhhhhhhHHH-HHHHhCCCCEEEEECCeeehHHHHHHHHCCEEEecCCCEEeCcccccCcCCCccHHHHHHHHhCHHHH
Confidence 11111122344 66889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCCCCHHHHHHcCCcceecCchHHHHHHHHHHHHHHhcChhhhhhhhccCCCCChHHHHHHHHHHHHHHHHhCC
Q 007805 160 IEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAP 239 (589)
Q Consensus 160 ~~l~ltg~~~~a~~A~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (589)
++++++|++++|+||+++||||+|||++++.+++.+++++|++.||.+++
T Consensus 156 ~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~a~~------------------------------ 205 (261)
T PRK03580 156 NEMVMTGRRMDAEEALRWGIVNRVVPQAELMDRARELAQQLVNSAPLAIA------------------------------ 205 (261)
T ss_pred HHHHHhCCccCHHHHHHcCCCcEecCHhHHHHHHHHHHHHHHhCCHHHHH------------------------------
Confidence 99999999999999999999999999999999999999999999986544
Q ss_pred CChhHHHHHHHHHHhhcCCHHHHHHHHH----HHHHHHhCCHHHHhHHHHHHHhhhccC
Q 007805 240 NMPQHQACLDVIEEGIVHGGYSGVLKEA----KVFKELVMLDTSRGLVHVFFAQRATSK 294 (589)
Q Consensus 240 ~~~a~~~~~~~~~~~~~~~~~~~l~~E~----~~~~~~~~s~~~~~~i~af~~~r~~~~ 294 (589)
.+|++++.....+++++++.|. ..+..++.++|+++++++|++||++++
T Consensus 206 ------~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~d~~e~~~af~ekr~~~~ 258 (261)
T PRK03580 206 ------ALKEIYRETSEMPVEEAYRYIRSGVLKHYPSVLHSEDALEGPRAFAEKRDPVW 258 (261)
T ss_pred ------HHHHHHHHHhcCCHHHHHHHHHhhhHHHHHHHhcCccHHHHHHHHhcCCCCCC
Confidence 4467777777778888888886 478899999999999999999998775
No 42
>PRK07799 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=1.3e-49 Score=398.62 Aligned_cols=253 Identities=25% Similarity=0.349 Sum_probs=223.7
Q ss_pred CCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCCcCCCCchhhhhccCCCcccc
Q 007805 3 APRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSL 81 (589)
Q Consensus 3 ~~~~~~~~~~~~v~~i~l~~p~-~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~ 81 (589)
++.+.+++ +++|++|+||||+ +|++|.+|+++|.+++++++.|+++|+|||||.|++||+|+|++++...........
T Consensus 4 ~~~i~~~~-~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~ 82 (263)
T PRK07799 4 GPHALVEQ-RGHTLIVTMNRPEARNALSTEMLRIMVDAWDRVDNDPDIRSCILTGAGGAFCAGMDLKAATKKPPGDSFKD 82 (263)
T ss_pred CceEEEEE-ECCEEEEEECCCcccCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCccccccCHHHHhhccccchhhh
Confidence 46788888 7899999999996 699999999999999999999999999999999999999999998864321111110
Q ss_pred --c-chhHHHHHHHHHHhCCCcEEEEeCCcccchhhHHhhhcCEEEEeCCceEeccccccCCCCChhhhhhHhhhcCHHH
Q 007805 82 --M-PDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSK 158 (589)
Q Consensus 82 --~-~~~~~~~~~~~l~~~~kp~iaav~G~a~GgG~~lala~D~~ia~~~a~~~~pe~~~Gl~p~~g~~~~l~~~~G~~~ 158 (589)
+ .... ..+ ..+..+||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|..+
T Consensus 83 ~~~~~~~~-~~~-~~~~~~~kpvIaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~ 160 (263)
T PRK07799 83 GSYDPSRI-DAL-LKGRRLTKPLIAAVEGPAIAGGTEILQGTDIRVAGESAKFGISEAKWSLFPMGGSAVRLVRQIPYTV 160 (263)
T ss_pred hhhhhhHH-HHH-HHHhcCCCCEEEEECCeEeccHHHHHHhCCEEEecCCCEecCcccccCcCCCccHHHHHHHHhCHHH
Confidence 0 0111 123 2367999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCCCCHHHHHHcCCcceecCchHHHHHHHHHHHHHHhcChhhhhhhhccCCCCChHHHHHHHHHHHHHHHHhC
Q 007805 159 AIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTA 238 (589)
Q Consensus 159 a~~l~ltg~~~~a~~A~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (589)
|++|++||++++|+||+++||||+|||++++.+++.++++++++.||.+++
T Consensus 161 a~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~~~~~~~~a~~----------------------------- 211 (263)
T PRK07799 161 ACDLLLTGRHITAAEAKEIGLIGHVVPDGQALDKALELAELINANGPLAVQ----------------------------- 211 (263)
T ss_pred HHHHHHcCCCCCHHHHHHcCCccEecCcchHHHHHHHHHHHHHhcChHHHH-----------------------------
Confidence 999999999999999999999999999999999999999999999886543
Q ss_pred CCChhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHhHHHHHHHhhhccC
Q 007805 239 PNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSK 294 (589)
Q Consensus 239 ~~~~a~~~~~~~~~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~af~~~r~~~~ 294 (589)
.+|+.++.....++.++++.|.+.+..++.++++++++++|++||+|++
T Consensus 212 -------~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~~~~~~egi~af~~~r~p~~ 260 (263)
T PRK07799 212 -------AILRTIRETEGMHENEAFKIDTKIGIPVFLSEDAKEGPRAFAEKRAPNF 260 (263)
T ss_pred -------HHHHHHHHhhcCCHHHHHHHHHHHHHHHhcCccHHHHHHHHHccCCCCC
Confidence 4567787777788999999999999999999999999999999998775
No 43
>PLN02888 enoyl-CoA hydratase
Probab=100.00 E-value=2.1e-49 Score=396.43 Aligned_cols=254 Identities=28% Similarity=0.466 Sum_probs=225.2
Q ss_pred CCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCCcCCCCchhhhhccCCCcccc
Q 007805 3 APRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSL 81 (589)
Q Consensus 3 ~~~~~~~~~~~~v~~i~l~~p~-~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~ 81 (589)
.+.+.++..+++|++|+||||+ .|++|.+|+.+|.++++.++.|+++|+|||||.|++||+|+|++++.+.....
T Consensus 8 ~~~i~~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~---- 83 (265)
T PLN02888 8 ENLILVPKSRNGIATITINRPKALNALTRPMMVELAAAFKRLDEDDSVKVIILTGSGRAFCSGVDLTAAEEVFKGD---- 83 (265)
T ss_pred CCeEEEEeccCCEEEEEEcCCCcccCCCHHHHHHHHHHHHHHhhCCCceEEEEECCCCcccCCCCHHHHHhhccch----
Confidence 3567777546889999999996 79999999999999999999999999999999999999999999875321111
Q ss_pred cchhHHHHHHHHHHhCCCcEEEEeCCcccchhhHHhhhcCEEEEeCCceEeccccccCCCCChhhhhhHhhhcCHHHHHH
Q 007805 82 MPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIE 161 (589)
Q Consensus 82 ~~~~~~~~~~~~l~~~~kp~iaav~G~a~GgG~~lala~D~~ia~~~a~~~~pe~~~Gl~p~~g~~~~l~~~~G~~~a~~ 161 (589)
......+.+ ..+.++|||+||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|..+|++
T Consensus 84 ~~~~~~~~~-~~i~~~~kPvIaav~G~a~GgG~~lal~cD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a~~ 162 (265)
T PLN02888 84 VKDVETDPV-AQMERCRKPIIGAINGFAITAGFEIALACDILVASRGAKFIDTHAKFGIFPSWGLSQKLSRIIGANRARE 162 (265)
T ss_pred hhHHHHHHH-HHHHhCCCCEEEEECCeeechHHHHHHhCCEEEecCCCEecCccccccCCCCccHhhHHHHHhCHHHHHH
Confidence 111123455 5688999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCCCCHHHHHHcCCcceecCchHHHHHHHHHHHHHHhcChhhhhhhhccCCCCChHHHHHHHHHHHHHHHHhCCCC
Q 007805 162 MMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPNM 241 (589)
Q Consensus 162 l~ltg~~~~a~~A~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (589)
|++||++++|+||+++||||+|||++++.+++.++|+++++.+|.+++
T Consensus 163 l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~a~~-------------------------------- 210 (265)
T PLN02888 163 VSLTAMPLTAETAERWGLVNHVVEESELLKKAREVAEAIIKNNQGMVL-------------------------------- 210 (265)
T ss_pred HHHhCCccCHHHHHHcCCccEeeChHHHHHHHHHHHHHHHhCCHHHHH--------------------------------
Confidence 999999999999999999999999999999999999999999986544
Q ss_pred hhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHh--CCHHHHhHHHHHHHhhhccCCCC
Q 007805 242 PQHQACLDVIEEGIVHGGYSGVLKEAKVFKELV--MLDTSRGLVHVFFAQRATSKVPN 297 (589)
Q Consensus 242 ~a~~~~~~~~~~~~~~~~~~~l~~E~~~~~~~~--~s~~~~~~i~af~~~r~~~~~~~ 297 (589)
.+|++++.....+++++++.|.+.+..++ .++|+++++++|++||+++|.|+
T Consensus 211 ----~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~d~~e~~~af~ekr~~~~~~~ 264 (265)
T PLN02888 211 ----RYKSVINDGLKLDLGHALQLEKERAHDYYNGMTKEQFQKMQEFIAGRSSKKPSK 264 (265)
T ss_pred ----HHHHHHHHhhcCCHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHhcCCCCCCCC
Confidence 45677887777889999999999888886 59999999999999999998663
No 44
>PRK06210 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=1.2e-49 Score=401.07 Aligned_cols=256 Identities=27% Similarity=0.372 Sum_probs=227.0
Q ss_pred CCCCcEEEEEecC-cEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCCcCCCCchhhhhccCCCc
Q 007805 1 MAAPRVTMEVGND-GVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGD 78 (589)
Q Consensus 1 M~~~~~~~~~~~~-~v~~i~l~~p~-~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~ 78 (589)
|+|+.+.+++ ++ +|++|+||||+ .|++|.+|+++|.++++.++.|+++|+|||+|.|++||+|+|++++........
T Consensus 2 ~~~~~i~~~~-~~~~v~~itlnrp~~~Nal~~~~~~~L~~~l~~~~~d~~vr~vVl~g~g~~FcaG~Dl~~~~~~~~~~~ 80 (272)
T PRK06210 2 MAYDAVLYEV-ADSGVAVITLNRPDRLNAWTPVMEAEVYAAMDRAEADPAVRVIVLTGAGRGFCAGADMGELQTIDPSDG 80 (272)
T ss_pred CCcceEEEEE-CCCCEEEEEeCCcccccCCCHHHHHHHHHHHHHhccCCCeeEEEEECCCCCcccccCHHHHhccCcccc
Confidence 8899999999 77 99999999996 799999999999999999999999999999999999999999998754221110
Q ss_pred c-----cccch----hHHHHHHHHHHhCCCcEEEEeCCcccchhhHHhhhcCEEEEeCCceEeccccccCCCCChhhhhh
Q 007805 79 V-----SLMPD----VSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQR 149 (589)
Q Consensus 79 ~-----~~~~~----~~~~~~~~~l~~~~kp~iaav~G~a~GgG~~lala~D~~ia~~~a~~~~pe~~~Gl~p~~g~~~~ 149 (589)
. ..+.. ..++.+ ..+.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~-~~l~~~~kPvIaav~G~a~GgG~~lala~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~ 159 (272)
T PRK06210 81 RRDTDVRPFVGNRRPDYQTRY-HFLTALRKPVIAAINGACAGIGLTHALMCDVRFAADGAKFTTAFARRGLIAEHGISWI 159 (272)
T ss_pred cccccchhhhhhhhhhHHHHH-HHHHhCCCCEEEEECCeeehHHHHHHHhCCEEEEeCCCEEechHHhcCCCCCCchhhh
Confidence 0 00100 112344 5688999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhcCHHHHHHHHHcCCCCCHHHHHHcCCcceecCchHHHHHHHHHHHHHHhc-ChhhhhhhhccCCCCChHHHHHHHH
Q 007805 150 LPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAAR-RKPWIRSLHRTDKLGSLSEAREVLK 228 (589)
Q Consensus 150 l~~~~G~~~a~~l~ltg~~~~a~~A~~~Glv~~vv~~~~l~~~a~~~a~~la~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (589)
|++++|..++++|++||++++|+||+++||||+|||++++.+++.++|+++++. +|.++.
T Consensus 160 l~~~ig~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~i~~~~~p~a~~------------------- 220 (272)
T PRK06210 160 LPRLVGHANALDLLLSARTFYAEEALRLGLVNRVVPPDELMERTLAYAEDLARNVSPASMA------------------- 220 (272)
T ss_pred hHhhhCHHHHHHHHHcCCccCHHHHHHcCCcceecCHHHHHHHHHHHHHHHHhcCCHHHHH-------------------
Confidence 999999999999999999999999999999999999999999999999999985 765443
Q ss_pred HHHHHHHHhCCCChhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHhHHHHHHHhhhccC
Q 007805 229 LARLQAKKTAPNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSK 294 (589)
Q Consensus 229 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~af~~~r~~~~ 294 (589)
.+|+.++.....++.++++.|...+..++.++++++++++|++||+|.+
T Consensus 221 -----------------~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~~~~~~egi~af~~kr~p~~ 269 (272)
T PRK06210 221 -----------------VIKRQLYEDAFQTLAEATARANREMHESLQRPDFIEGVASFLEKRPPRF 269 (272)
T ss_pred -----------------HHHHHHHhcccCCHHHHHHHHHHHHHHHhcCccHHHHHHHHhccCCCCC
Confidence 4567787777778999999999999999999999999999999998775
No 45
>TIGR02280 PaaB1 phenylacetate degradation probable enoyl-CoA hydratase paaB. This family of proteins are found within apparent operons for the degradation of phenylacetic acid. These proteins contain the enoyl-CoA hydratase domain as detected by pfam00378. This activity is consistent with current hypotheses for the degradation pathway which involve the ligation of phenylacetate with coenzyme A (paaF), hydroxylation (paaGHIJK), ring-opening (paaN) and degradation of the resulting fatty acid-like compound to a Krebs cycle intermediate (paaABCDE).
Probab=100.00 E-value=1.2e-49 Score=397.14 Aligned_cols=250 Identities=26% Similarity=0.386 Sum_probs=221.5
Q ss_pred EEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCCcCCCCchhhhhccCCC-cc-ccc
Q 007805 6 VTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAG-DV-SLM 82 (589)
Q Consensus 6 ~~~~~~~~~v~~i~l~~p~-~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~-~~-~~~ 82 (589)
+.+++ +++|++||||||+ .|++|.+|+.+|.++++++++|+ +|+|||||.|++||+|+|++++....... .. ..+
T Consensus 1 ~~~e~-~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~-v~~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~ 78 (256)
T TIGR02280 1 ILSAL-EAGVARLTLNRPDKLNSFTAEMHLELREALERVERDD-ARALMLTGAGRGFCAGQDLSERNPTPGGAPDLGRTI 78 (256)
T ss_pred CeEEE-ECCEEEEEecCcccccCCCHHHHHHHHHHHHHHhcCC-cEEEEEECCCCCcccCcCHHHHhhccccchhHHHHH
Confidence 35777 7899999999995 79999999999999999999998 99999999999999999999875421110 00 011
Q ss_pred chhHHHHHHHHHHhCCCcEEEEeCCcccchhhHHhhhcCEEEEeCCceEeccccccCCCCChhhhhhHhhhcCHHHHHHH
Q 007805 83 PDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEM 162 (589)
Q Consensus 83 ~~~~~~~~~~~l~~~~kp~iaav~G~a~GgG~~lala~D~~ia~~~a~~~~pe~~~Gl~p~~g~~~~l~~~~G~~~a~~l 162 (589)
......++ +.+.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|++++|..++++|
T Consensus 79 ~~~~~~~~-~~l~~~~kPvIaav~G~a~GgG~~lala~D~ria~~~a~f~~pe~~lG~~p~~g~~~~l~~~vG~~~a~~l 157 (256)
T TIGR02280 79 ETFYNPLV-RRLRALPLPVVCAVNGVAAGAGANLALACDIVLAAESARFIQAFAKIGLIPDSGGTWSLPRLVGRARAMGL 157 (256)
T ss_pred HHHHHHHH-HHHHhCCCCEEEEECCeeehHHHHHHHhCCEEEecCCCEEeChhhhcCCCCCccHHHHHHHHhCHHHHHHH
Confidence 11122344 67899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCCCCHHHHHHcCCcceecCchHHHHHHHHHHHHHHhcChhhhhhhhccCCCCChHHHHHHHHHHHHHHHHhCCCCh
Q 007805 163 MLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPNMP 242 (589)
Q Consensus 163 ~ltg~~~~a~~A~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (589)
+++|++++|+||+++||||+|||++++.+++.++|+++++.||.+++
T Consensus 158 ~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~--------------------------------- 204 (256)
T TIGR02280 158 AMLGEKLDARTAASWGLIWQVVDDAALMDEAQALAVHLAAQPTRGLA--------------------------------- 204 (256)
T ss_pred HHcCCCCCHHHHHHcCCcceeeChHHHHHHHHHHHHHHHhCCHHHHH---------------------------------
Confidence 99999999999999999999999999999999999999999876543
Q ss_pred hHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHhHHHHHHHhhhccC
Q 007805 243 QHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSK 294 (589)
Q Consensus 243 a~~~~~~~~~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~af~~~r~~~~ 294 (589)
.+|+.++.....++.++++.|.+.+..++.|+|+++++++|++||+|++
T Consensus 205 ---~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~d~~eg~~af~~kr~p~~ 253 (256)
T TIGR02280 205 ---LTKRAIQAAATNSLDTQLDLERDLQRELGRSADYAEGVTAFLDKRNPQF 253 (256)
T ss_pred ---HHHHHHHhhhcCCHHHHHHHHHHHHHHHhcChhHHHHHHHHHcCCCCCC
Confidence 4577888777788999999999999999999999999999999998875
No 46
>PRK08252 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=1.8e-49 Score=395.28 Aligned_cols=250 Identities=28% Similarity=0.410 Sum_probs=221.9
Q ss_pred CCCCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCCcCCCCchhhhhccCCCcc
Q 007805 1 MAAPRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDV 79 (589)
Q Consensus 1 M~~~~~~~~~~~~~v~~i~l~~p~-~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~ 79 (589)
|+ +.+.+++ +++|++|+||||+ .|++|.+|+++|.+++++++.|+++|+|||||.|++||+|+|++++.......
T Consensus 1 ~~-~~v~~~~-~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vvl~g~g~~F~aG~Dl~~~~~~~~~~-- 76 (254)
T PRK08252 1 MS-DEVLVER-RGRVLIITINRPEARNAVNAAVAQGLAAALDELDADPDLSVGILTGAGGTFCAGMDLKAFARGERPS-- 76 (254)
T ss_pred CC-ceEEEEE-ECCEEEEEECCCcccCCCCHHHHHHHHHHHHHHhhCCCceEEEEECCCCceEcCcCHHHHhcccchh--
Confidence 65 5788998 7899999999996 69999999999999999999999999999999999999999999876421110
Q ss_pred cccchhHHHHHHHHHHhCCCcEEEEeCCcccchhhHHhhhcCEEEEeCCceEeccccccCCCCChhhhhhHhhhcCHHHH
Q 007805 80 SLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKA 159 (589)
Q Consensus 80 ~~~~~~~~~~~~~~l~~~~kp~iaav~G~a~GgG~~lala~D~~ia~~~a~~~~pe~~~Gl~p~~g~~~~l~~~~G~~~a 159 (589)
........++ ...+||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|..+|
T Consensus 77 -~~~~~~~~~~---~~~~~kPvIaav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vg~~~a 152 (254)
T PRK08252 77 -IPGRGFGGLT---ERPPRKPLIAAVEGYALAGGFELALACDLIVAARDAKFGLPEVKRGLVAAGGGLLRLPRRIPYHIA 152 (254)
T ss_pred -hhHHHHHHHH---HhcCCCCEEEEECCEEehHHHHHHHhCCEEEEeCCCEEeCchhhcCCCCCchHHHHHHHHcCHHHH
Confidence 1111111222 247999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCCCCHHHHHHcCCcceecCchHHHHHHHHHHHHHHhcChhhhhhhhccCCCCChHHHHHHHHHHHHHHHHhCC
Q 007805 160 IEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAP 239 (589)
Q Consensus 160 ~~l~ltg~~~~a~~A~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (589)
++++++|++++|+||+++||||+|||++++++++.++++++++.||.+++
T Consensus 153 ~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~l~~~~~~a~~------------------------------ 202 (254)
T PRK08252 153 MELALTGDMLTAERAHELGLVNRLTEPGQALDAALELAERIAANGPLAVA------------------------------ 202 (254)
T ss_pred HHHHHcCCccCHHHHHHcCCcceecCcchHHHHHHHHHHHHHhCCHHHHH------------------------------
Confidence 99999999999999999999999999999999999999999999886543
Q ss_pred CChhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHhHHHHHHHhhhccC
Q 007805 240 NMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSK 294 (589)
Q Consensus 240 ~~~a~~~~~~~~~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~af~~~r~~~~ 294 (589)
.+|++++.....++.+.++.|...+..++.++|+++++.+|++||++++
T Consensus 203 ------~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~~~~~~eg~~af~~kr~p~~ 251 (254)
T PRK08252 203 ------ASKRIVVESGDWSEDEMFARQRELIAPVFTSADAKEGATAFAEKRAPVW 251 (254)
T ss_pred ------HHHHHHHHhhcCCHHHHHHHHHHHHHHHhcCchHHHHHHHHhcCCCCCC
Confidence 4567777777778999999999999999999999999999999988775
No 47
>PRK09120 p-hydroxycinnamoyl CoA hydratase/lyase; Validated
Probab=100.00 E-value=1.6e-49 Score=399.35 Aligned_cols=251 Identities=23% Similarity=0.322 Sum_probs=220.1
Q ss_pred CcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCCcCCCCchhhhhccCCC-c--c
Q 007805 4 PRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAG-D--V 79 (589)
Q Consensus 4 ~~~~~~~~~~~v~~i~l~~p~-~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~-~--~ 79 (589)
+++.+++ +++|++|+||||+ .|++|.+|+.+|.++++.++.|+++|+|||||.|++||+|.|++++....... . .
T Consensus 8 ~~i~~~~-~~~va~itlnrp~~~Nal~~~m~~el~~al~~~~~d~~vr~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~ 86 (275)
T PRK09120 8 DTVKVEV-EDGIAWVTLNRPEKRNAMSPTLNREMIDVLDALEFDDDAGVLVLTGAGDAWSAGMDLKEYFRETDAQPEILQ 86 (275)
T ss_pred ccEEEEE-ECCEEEEEecCcccccCCCHHHHHHHHHHHHHHHhCCCceEEEEEcCCCceecCcCHHHHhhccccchhHHH
Confidence 5688998 7899999999996 79999999999999999999999999999999999999999999874321111 0 1
Q ss_pred cccchhHHHHHHHHHHhCCCcEEEEeCCcccchhhHHhhhcCEEEEeCCceEeccccccCCCCChhhhhhHhhhcCHHHH
Q 007805 80 SLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKA 159 (589)
Q Consensus 80 ~~~~~~~~~~~~~~l~~~~kp~iaav~G~a~GgG~~lala~D~~ia~~~a~~~~pe~~~Gl~p~~g~~~~l~~~~G~~~a 159 (589)
.........++ ..+.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|..+|
T Consensus 87 ~~~~~~~~~~~-~~l~~~~kPvIAav~G~a~GgG~~lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~iG~~~a 165 (275)
T PRK09120 87 ERIRREAYGWW-RRLRWYQKPTIAMVNGWCFGGGFSPLVACDLAIAADEAQFGLSEINWGIPPGGGVSKAMADTVGHRDA 165 (275)
T ss_pred HHHHHHHHHHH-HHHHhCCCCEEEEEcCEEechhHHHHHhCCEEEEeCCcEecCCccccCCCCCcchHHHHHHHcCHHHH
Confidence 11111223445 66899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCCCCHHHHHHcCCcceecCchHHHHHHHHHHHHHHhcChhhhhhhhccCCCCChHHHHHHHHHHHHHHHHhCC
Q 007805 160 IEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAP 239 (589)
Q Consensus 160 ~~l~ltg~~~~a~~A~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (589)
++|+++|++++|+||+++||||+|||++++++++.+++++|++.||.+++
T Consensus 166 ~~llltg~~~~A~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~p~a~~------------------------------ 215 (275)
T PRK09120 166 LYYIMTGETFTGRKAAEMGLVNESVPLAQLRARTRELAAKLLEKNPVVLR------------------------------ 215 (275)
T ss_pred HHHHhcCCccCHHHHHHcCCcceecCHHHHHHHHHHHHHHHHhCCHHHHH------------------------------
Confidence 99999999999999999999999999999999999999999999986554
Q ss_pred CChhHHHHHHHHHHhhcCCHHHHHHHHHH--HHHHHhCCH-HHHhHHHHHHHhhhc
Q 007805 240 NMPQHQACLDVIEEGIVHGGYSGVLKEAK--VFKELVMLD-TSRGLVHVFFAQRAT 292 (589)
Q Consensus 240 ~~~a~~~~~~~~~~~~~~~~~~~l~~E~~--~~~~~~~s~-~~~~~i~af~~~r~~ 292 (589)
.+|+.++.....++.+.++.|.. .+..++.++ |+++++++|++||..
T Consensus 216 ------~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~d~~eg~~afl~kr~~ 265 (275)
T PRK09120 216 ------AAKDGFKRVRELTWDQAEDYLYAKLEQANSLDPEGGREEGLKQFLDDKSY 265 (275)
T ss_pred ------HHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcccC
Confidence 45677887777888888888764 456678998 899999999999883
No 48
>PLN02600 enoyl-CoA hydratase
Probab=100.00 E-value=1.2e-49 Score=395.68 Aligned_cols=245 Identities=30% Similarity=0.475 Sum_probs=219.8
Q ss_pred cCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcC-CCCCcCCCCchhhhhccCCCcccccchhHHHH
Q 007805 12 NDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGN-GGRFSGGFDINVFQKVHGAGDVSLMPDVSVEL 89 (589)
Q Consensus 12 ~~~v~~i~l~~p~-~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~-g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~ 89 (589)
+++|++||||||+ .|++|.+|+++|.+++++++.|+++|+|||||. |++||+|+|++++..... .....+......+
T Consensus 2 ~~~v~~itlnrp~~~Nal~~~~~~~l~~~~~~~~~d~~vr~vVl~g~~g~~F~aG~Dl~~~~~~~~-~~~~~~~~~~~~~ 80 (251)
T PLN02600 2 DSGIVELRLDRPEAKNAIGKEMLRGLRSAFEKIQADASARVVMLRSSVPGVFCAGADLKERRKMSP-SEVQKFVNSLRST 80 (251)
T ss_pred CCcEEEEEEcCCcccCCCCHHHHHHHHHHHHHHhhCCCceEEEEecCCCCceeeCcCHHHHhccCh-HHHHHHHHHHHHH
Confidence 5789999999996 699999999999999999999999999999998 589999999998754211 1111222223345
Q ss_pred HHHHHHhCCCcEEEEeCCcccchhhHHhhhcCEEEEeCCceEeccccccCCCCChhhhhhHhhhcCHHHHHHHHHcCCCC
Q 007805 90 VVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSI 169 (589)
Q Consensus 90 ~~~~l~~~~kp~iaav~G~a~GgG~~lala~D~~ia~~~a~~~~pe~~~Gl~p~~g~~~~l~~~~G~~~a~~l~ltg~~~ 169 (589)
+ ..+.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|..++++|++||+++
T Consensus 81 ~-~~l~~~~kPvIAav~G~a~GgG~~lala~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~~G~~~a~~l~ltg~~~ 159 (251)
T PLN02600 81 F-SSLEALSIPTIAVVEGAALGGGLELALSCDLRICGEEAVFGLPETGLAIIPGAGGTQRLPRLVGRSRAKELIFTGRRI 159 (251)
T ss_pred H-HHHHhCCCCEEEEecCeecchhHHHHHhCCEEEeeCCCEEeCcccccCcCCCchHHHHHHHHhCHHHHHHHHHhCCcc
Confidence 5 668899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHcCCcceecCchHHHHHHHHHHHHHHhcChhhhhhhhccCCCCChHHHHHHHHHHHHHHHHhCCCChhHHHHHH
Q 007805 170 TSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPNMPQHQACLD 249 (589)
Q Consensus 170 ~a~~A~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 249 (589)
+|+||+++||||+|||++++++++.++|++|++.||.+++ .+|+
T Consensus 160 ~a~eA~~~Glv~~vv~~~~~~~~a~~~a~~la~~~p~a~~------------------------------------~~K~ 203 (251)
T PLN02600 160 GAREAASMGLVNYCVPAGEAYEKALELAQEINQKGPLAIK------------------------------------MAKK 203 (251)
T ss_pred CHHHHHHcCCCcEeeChhHHHHHHHHHHHHHHhCCHHHHH------------------------------------HHHH
Confidence 9999999999999999999999999999999999986543 4577
Q ss_pred HHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHhHHHHHHHhhhccC
Q 007805 250 VIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSK 294 (589)
Q Consensus 250 ~~~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~af~~~r~~~~ 294 (589)
+++.....++.++++.|...+..++.++|+++++++|++||+|++
T Consensus 204 ~l~~~~~~~~~~~~~~e~~~~~~~~~~~d~~eg~~af~ekr~p~~ 248 (251)
T PLN02600 204 AINEGSEVDMASGLEIEEECYEQVLKTKDRLEGLAAFAEKRKPVY 248 (251)
T ss_pred HHHHHccCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHhcCCCCCC
Confidence 888777788999999999999999999999999999999998774
No 49
>PRK07511 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=1.9e-49 Score=396.93 Aligned_cols=255 Identities=24% Similarity=0.310 Sum_probs=227.2
Q ss_pred CCCCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCCcCCCCchhhhhccC--CC
Q 007805 1 MAAPRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHG--AG 77 (589)
Q Consensus 1 M~~~~~~~~~~~~~v~~i~l~~p~-~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~--~~ 77 (589)
|| .++.+++ +++|++|+||||+ .|++|.+|+++|.+++++++.|+++|+|||+|.|++||+|+|++++..... ..
T Consensus 1 ~~-~~~~~~~-~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vVl~g~g~~F~~G~Dl~~~~~~~~~~~~ 78 (260)
T PRK07511 1 MS-AELLSRR-EGSTLVLTLSNPGARNALHPDMYAAGIEALNTAERDPSIRAVVLTGAGGFFCAGGNLNRLLENRAKPPS 78 (260)
T ss_pred CC-CeeEEEe-ECCEEEEEECCcccccCCCHHHHHHHHHHHHHhccCCCeEEEEEECCCCCcccCcCHHHHhhcccccch
Confidence 77 4578888 8899999999996 799999999999999999999999999999999999999999998754211 11
Q ss_pred cccccchhHHHHHHHHHHhCCCcEEEEeCCcccchhhHHhhhcCEEEEeCCceEeccccccCCCCChhhhhhHhhhcCHH
Q 007805 78 DVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLS 157 (589)
Q Consensus 78 ~~~~~~~~~~~~~~~~l~~~~kp~iaav~G~a~GgG~~lala~D~~ia~~~a~~~~pe~~~Gl~p~~g~~~~l~~~~G~~ 157 (589)
....+.....+++ ..+.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|..
T Consensus 79 ~~~~~~~~~~~~~-~~l~~~~kpvIAav~G~a~GgG~~lala~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vg~~ 157 (260)
T PRK07511 79 VQAASIDGLHDWI-RAIRAFPKPVIAAVEGAAAGAGFSLALACDLLVAARDAKFVMAYVKVGLTPDGGGSWFLARALPRQ 157 (260)
T ss_pred hHHHHHHHHHHHH-HHHHcCCCCEEEEECCeeehHHHHHHHhCCEEEeeCCCEEeccccccCcCCCchHHHHHHHHhCHH
Confidence 1111222334555 678999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCCCCHHHHHHcCCcceecCchHHHHHHHHHHHHHHhcChhhhhhhhccCCCCChHHHHHHHHHHHHHHHHh
Q 007805 158 KAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKT 237 (589)
Q Consensus 158 ~a~~l~ltg~~~~a~~A~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (589)
++++|++||++++|+||+++||||+|||++++.+++.++++++++.||.+++
T Consensus 158 ~a~~l~ltg~~~~a~eA~~~Glv~~vv~~~~~~~~a~~~a~~l~~~~~~~~~---------------------------- 209 (260)
T PRK07511 158 LATELLLEGKPISAERLHALGVVNRLAEPGQALAEALALADQLAAGSPNALA---------------------------- 209 (260)
T ss_pred HHHHHHHhCCCCCHHHHHHcCCccEeeCchHHHHHHHHHHHHHHhCCHHHHH----------------------------
Confidence 9999999999999999999999999999999999999999999998875443
Q ss_pred CCCChhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHhHHHHHHHhhhccC
Q 007805 238 APNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSK 294 (589)
Q Consensus 238 ~~~~~a~~~~~~~~~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~af~~~r~~~~ 294 (589)
.+|+.++.....++.++++.|.+.+..++.++|+++++++|+++|++++
T Consensus 210 --------~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~i~~f~~~r~~~~ 258 (260)
T PRK07511 210 --------RIKSLIADAPEATLAAQLEAERDHFVASLHHADALEGIAAFLEKRAPDY 258 (260)
T ss_pred --------HHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCchHHHHHHHHhccCCCCC
Confidence 4567787777788999999999999999999999999999999998775
No 50
>PRK08258 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=1.8e-49 Score=400.01 Aligned_cols=252 Identities=30% Similarity=0.429 Sum_probs=224.7
Q ss_pred cEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCCcCCCCchhhhhccCC-C--ccc
Q 007805 5 RVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGA-G--DVS 80 (589)
Q Consensus 5 ~~~~~~~~~~v~~i~l~~p~-~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~-~--~~~ 80 (589)
++.+++ +++|++|+||||+ .|+++.+|+.+|.+++++++.|+++|+|||||.|++||+|+|++++...... . ...
T Consensus 18 ~~~~~~-~~~v~~itlnrp~~~Nal~~~~~~eL~~~l~~~~~d~~vr~vVltg~g~~FsaG~Dl~~~~~~~~~~~~~~~~ 96 (277)
T PRK08258 18 HFLWEV-DDGVATITLNRPERKNPLTFESYAELRDLFRELVYADDVKAVVLTGAGGNFCSGGDVHEIIGPLTKMDMPELL 96 (277)
T ss_pred ceEEEE-ECCEEEEEeCCcccccCCCHHHHHHHHHHHHHHhcCCCceEEEEeCCCCCcccccCHHHHhccccccChhHHH
Confidence 688888 7899999999995 7999999999999999999999999999999999999999999987432111 1 011
Q ss_pred ccchhHHHHHHHHHHhCCCcEEEEeCCcccchhhHHhhhcCEEEEeCCceEeccccccCCCC-ChhhhhhHhhhcCHHHH
Q 007805 81 LMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIP-GFGGTQRLPRLVGLSKA 159 (589)
Q Consensus 81 ~~~~~~~~~~~~~l~~~~kp~iaav~G~a~GgG~~lala~D~~ia~~~a~~~~pe~~~Gl~p-~~g~~~~l~~~~G~~~a 159 (589)
.+.....+++ +.+.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++| ++|++++|++++|..+|
T Consensus 97 ~~~~~~~~~~-~~l~~~~kPvIAaV~G~a~GgG~~LalacD~ria~~~a~f~~pe~~~Gl~p~~~g~~~~l~~~vG~~~a 175 (277)
T PRK08258 97 AFTRMTGDLV-KAMRACPQPIIAAVDGVCAGAGAILAMASDLRLGTPSAKTAFLFTRVGLAGADMGACALLPRIIGQGRA 175 (277)
T ss_pred HHHHHHHHHH-HHHHhCCCCEEEEECCeeehHHHHHHHhCCEEEecCCCEEeccccccCcCCCCchHHHHHHHHhCHHHH
Confidence 1222223455 678999999999999999999999999999999999999999999999995 78999999999999999
Q ss_pred HHHHHcCCCCCHHHHHHcCCcceecCchHHHHHHHHHHHHHHhcChhhhhhhhccCCCCChHHHHHHHHHHHHHHHHhCC
Q 007805 160 IEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAP 239 (589)
Q Consensus 160 ~~l~ltg~~~~a~~A~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (589)
++|+++|++++|+||+++||||+|||++++.+++.+++++|++.||.+++
T Consensus 176 ~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~a~~------------------------------ 225 (277)
T PRK08258 176 SELLYTGRSMSAEEGERWGFFNRLVEPEELLAEAQALARRLAAGPTFAHG------------------------------ 225 (277)
T ss_pred HHHHHcCCCCCHHHHHHcCCCcEecCHHHHHHHHHHHHHHHHhCCHHHHH------------------------------
Confidence 99999999999999999999999999999999999999999999986544
Q ss_pred CChhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHhHHHHHHHhhhccC
Q 007805 240 NMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSK 294 (589)
Q Consensus 240 ~~~a~~~~~~~~~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~af~~~r~~~~ 294 (589)
.+|++++.....+++++++.|.+.+..++.|+|+++++++|++||++++
T Consensus 226 ------~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~s~d~~eg~~af~ekr~p~~ 274 (277)
T PRK08258 226 ------MTKTMLHQEWDMGLEEAIEAEAQAQAICMQTEDFRRAYEAFVAKRKPVF 274 (277)
T ss_pred ------HHHHHHHhhccCCHHHHHHHHHHHHHHHhcCchHHHHHHHHhcCCCCCC
Confidence 4567888777788999999999999999999999999999999999885
No 51
>PRK06127 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=1.9e-49 Score=398.14 Aligned_cols=255 Identities=25% Similarity=0.403 Sum_probs=226.2
Q ss_pred CCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCC-CCCcCCCCchhhhhccCC-Ccc
Q 007805 3 APRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNG-GRFSGGFDINVFQKVHGA-GDV 79 (589)
Q Consensus 3 ~~~~~~~~~~~~v~~i~l~~p~-~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g-~~F~aG~Dl~~~~~~~~~-~~~ 79 (589)
.+.+.+++ +++|++|+||||+ .|++|.+|+++|.++++.++.|+++|+|||||.| ++||+|+|++++...... ...
T Consensus 10 ~~~v~~~~-~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~~~~ 88 (269)
T PRK06127 10 TGKLLAEK-TGGLGRITFNNPARHNAMSLDMWEALPQALAAAEDDDAIRVVVLTGAGEKAFVSGADISQFEESRSDAEAV 88 (269)
T ss_pred CCceEEEE-ECCEEEEEecCCCccCCCCHHHHHHHHHHHHHHHhCCCcEEEEEEeCCCCceecCcCHHHHhhcccchHHH
Confidence 36788888 7899999999996 7999999999999999999999999999999998 799999999987542111 111
Q ss_pred cccchhHHHHHHHHHHhCCCcEEEEeCCcccchhhHHhhhcCEEEEeCCceEeccccccCCCCChhhhhhHhhhcCHHHH
Q 007805 80 SLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKA 159 (589)
Q Consensus 80 ~~~~~~~~~~~~~~l~~~~kp~iaav~G~a~GgG~~lala~D~~ia~~~a~~~~pe~~~Gl~p~~g~~~~l~~~~G~~~a 159 (589)
..+......++ ..+.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|..++
T Consensus 89 ~~~~~~~~~~~-~~i~~~~kPvIaav~G~a~GgG~~LalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a 167 (269)
T PRK06127 89 AAYEQAVEAAQ-AALADYAKPTIACIRGYCIGGGMGIALACDIRIAAEDSRFGIPAARLGLGYGYDGVKNLVDLVGPSAA 167 (269)
T ss_pred HHHHHHHHHHH-HHHHhCCCCEEEEECCEEecHHHHHHHhCCEEEeeCCCEeeCchhhhCCCCCccHHHHHHHHhCHHHH
Confidence 11222233445 67899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCCCCHHHHHHcCCcceecCchHHHHHHHHHHHHHHhcChhhhhhhhccCCCCChHHHHHHHHHHHHHHHHhCC
Q 007805 160 IEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAP 239 (589)
Q Consensus 160 ~~l~ltg~~~~a~~A~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (589)
++|++||++++|+||+++||||+|||++++++++.++|+++++.||.+++
T Consensus 168 ~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~l~~~~~~a~~------------------------------ 217 (269)
T PRK06127 168 KDLFYTARRFDAAEALRIGLVHRVTAADDLETALADYAATIAGNAPLTLR------------------------------ 217 (269)
T ss_pred HHHHHcCCCCCHHHHHHcCCCCEeeCHHHHHHHHHHHHHHHHhCCHHHHH------------------------------
Confidence 99999999999999999999999999999999999999999998876543
Q ss_pred CChhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHhHHHHHHHhhhccCC
Q 007805 240 NMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKV 295 (589)
Q Consensus 240 ~~~a~~~~~~~~~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~af~~~r~~~~~ 295 (589)
.+|++++.....++++.++.|...+..++.++|+++++.+|++||+|++.
T Consensus 218 ------~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~d~~e~~~af~ekr~p~~~ 267 (269)
T PRK06127 218 ------AAKRAIAELLKDEPERDMAACQALVAACFDSEDYREGRAAFMEKRKPVFK 267 (269)
T ss_pred ------HHHHHHHHhccCCHHHHHHHHHHHHHHHhcChHHHHHHHHHhcCCCCCCC
Confidence 45677777777789999999999999999999999999999999988753
No 52
>TIGR01929 menB naphthoate synthase (dihydroxynaphthoic acid synthetase). This model represents an enzyme, naphthoate synthase (dihydroxynaphthoic acid synthetase), which is involved in the fifth step of the menaquinone biosynthesis pathway. Together with o-succinylbenzoate-CoA ligase (menE: TIGR01923), this enzyme takes 2-succinylbenzoate and converts it into 1,4-di-hydroxy-2-naphthoate. Included above the trusted cutoff are two enzymes from Arabadopsis thaliana and one from Staphylococcus aureus which are identified as putative enoyl-CoA hydratase/isomerases. These enzymes group with the naphthoate synthases when building a tree and when doing BLAST searches.
Probab=100.00 E-value=2.7e-49 Score=394.84 Aligned_cols=253 Identities=25% Similarity=0.357 Sum_probs=215.8
Q ss_pred CcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCC-CCCcCCCCchhhhhccCCCcccc
Q 007805 4 PRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNG-GRFSGGFDINVFQKVHGAGDVSL 81 (589)
Q Consensus 4 ~~~~~~~~~~~v~~i~l~~p~-~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g-~~F~aG~Dl~~~~~~~~~~~~~~ 81 (589)
+.+.+++++++|++|+||||+ .|++|.+|+.+|.++++.++.|+++|+|||||.| ++||+|+|++++...........
T Consensus 2 ~~i~~~~~~~~v~~itlnrp~~~Nal~~~~~~el~~~l~~~~~d~~vr~vVltg~g~~~F~aG~Dl~~~~~~~~~~~~~~ 81 (259)
T TIGR01929 2 TDIRYEKSTDGIAKITINRPQVRNAFRPLTVKEIIQALDDAREDPDIGVVILTGAGDKAFCSGGDQKVRGDYGYIDDSGV 81 (259)
T ss_pred ceEEEEEcCCCEEEEEecCCccccCCCHHHHHHHHHHHHHHhhCCCeEEEEEEeCCCCceEeCcChHhHhhccccchhhH
Confidence 457777635789999999996 6999999999999999999999999999999999 79999999997643211110000
Q ss_pred cchhHHHHHHHHHHhCCCcEEEEeCCcccchhhHHhhhcCEEEEeCCceEeccccccCCCCChhhhhhHhhhcCHHHHHH
Q 007805 82 MPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIE 161 (589)
Q Consensus 82 ~~~~~~~~~~~~l~~~~kp~iaav~G~a~GgG~~lala~D~~ia~~~a~~~~pe~~~Gl~p~~g~~~~l~~~~G~~~a~~ 161 (589)
.......++ +.+.++|||+||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|..+|++
T Consensus 82 ~~~~~~~~~-~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~G~~p~~~~~~~l~~~vG~~~a~~ 160 (259)
T TIGR01929 82 HRLNVLDVQ-RQIRTCPKPVIAMVNGYAIGGGHVLHVVCDLTIAAENARFGQTGPKVGSFDGGYGSSYLARIVGQKKARE 160 (259)
T ss_pred HHHHHHHHH-HHHHhCCCCEEEEEcCEEehHHHHHHHhCCEEEecCCCEecCcccccccCCCccHHHHHHHHhHHHHHHH
Confidence 001122445 6789999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCCCCHHHHHHcCCcceecCchHHHHHHHHHHHHHHhcChhhhhhhhccCCCCChHHHHHHHHHHHHHHHHhCCCC
Q 007805 162 MMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPNM 241 (589)
Q Consensus 162 l~ltg~~~~a~~A~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (589)
|+++|++++|+||+++||||+|||++++.+++.++|++|++.||.+++
T Consensus 161 l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~a~~-------------------------------- 208 (259)
T TIGR01929 161 IWFLCRQYDAEQALDMGLVNTVVPLADLEKETVRWCREILQKSPMAIR-------------------------------- 208 (259)
T ss_pred HHHhCCccCHHHHHHcCCcccccCHHHHHHHHHHHHHHHHhCCHHHHH--------------------------------
Confidence 999999999999999999999999999999999999999999987654
Q ss_pred hhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHhHHHHHHHhhhccC
Q 007805 242 PQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSK 294 (589)
Q Consensus 242 ~a~~~~~~~~~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~af~~~r~~~~ 294 (589)
.+|++++..... ....+..|...+..++.|+|+++++++|++||+|++
T Consensus 209 ----~~K~~l~~~~~~-~~~~~~~e~~~~~~~~~~~d~~egi~af~~kr~p~~ 256 (259)
T TIGR01929 209 ----MLKAALNADCDG-QAGLQELAGNATMLFYMTEEGQEGRNAFLEKRQPDF 256 (259)
T ss_pred ----HHHHHHHhhhcc-chHHHHHHHHHHHHHhcCccHHHHHHHHhccCCCCC
Confidence 335555554332 344556677899999999999999999999999875
No 53
>PLN02664 enoyl-CoA hydratase/delta3,5-delta2,4-dienoyl-CoA isomerase
Probab=100.00 E-value=2e-49 Score=399.30 Aligned_cols=246 Identities=24% Similarity=0.405 Sum_probs=218.4
Q ss_pred cCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCCcCCCCchhhhhccCC----C--c----cc
Q 007805 12 NDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGA----G--D----VS 80 (589)
Q Consensus 12 ~~~v~~i~l~~p~-~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~----~--~----~~ 80 (589)
+++|++|+||||+ .|++|.+|+++|.++++.++.|+++|+|||||.|++||+|+|++++...... . . ..
T Consensus 15 ~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~vrvvVltg~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~ 94 (275)
T PLN02664 15 NSSVFHLNLNRPSQRNALSLDFFTEFPKALSSLDQNPNVSVIILSGAGDHFCSGIDLKTLNSISEQSSSGDRGRSGERLR 94 (275)
T ss_pred CCCEEEEEECCCCccCCCCHHHHHHHHHHHHHHHhCCCcEEEEEECCCCceeeCcChHHhhhcccccccccchhhHHHHH
Confidence 6889999999996 6999999999999999999999999999999999999999999987542110 0 0 00
Q ss_pred ccchhHHHHHHHHHHhCCCcEEEEeCCcccchhhHHhhhcCEEEEeCCceEeccccccCCCCChhhhhhHhhhcCHHHHH
Q 007805 81 LMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAI 160 (589)
Q Consensus 81 ~~~~~~~~~~~~~l~~~~kp~iaav~G~a~GgG~~lala~D~~ia~~~a~~~~pe~~~Gl~p~~g~~~~l~~~~G~~~a~ 160 (589)
.+....++++ +.+.++||||||+|||+|+|||++|+++||+||++++++|++||+++|+.|++|++++|++++|..+|+
T Consensus 95 ~~~~~~~~~~-~~l~~~~kPvIaav~G~a~GgG~~lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~A~ 173 (275)
T PLN02664 95 RKIKFLQDAI-TAIEQCRKPVIAAIHGACIGGGVDIVTACDIRYCSEDAFFSVKEVDLAITADLGTLQRLPSIVGYGNAM 173 (275)
T ss_pred HHHHHHHHHH-HHHHhCCCCEEEEECCccccchHHHHHhCCEEEecCCCEeccHHHhhCCCCCccHHHHHHHHhCHHHHH
Confidence 1111223445 668999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCCCCHHHHHHcCCcceecCc-hHHHHHHHHHHHHHHhcChhhhhhhhccCCCCChHHHHHHHHHHHHHHHHhCC
Q 007805 161 EMMLLSKSITSEEGWKLGLIDAVVTS-EELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAP 239 (589)
Q Consensus 161 ~l~ltg~~~~a~~A~~~Glv~~vv~~-~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (589)
++++||++++|+||+++||||+|||+ +++.+++.+++++|++.||.+++
T Consensus 174 ~l~ltg~~~~a~eA~~~GLv~~vv~~~~~l~~~~~~~a~~ia~~~p~a~~------------------------------ 223 (275)
T PLN02664 174 ELALTGRRFSGSEAKELGLVSRVFGSKEDLDEGVRLIAEGIAAKSPLAVT------------------------------ 223 (275)
T ss_pred HHHHhCCCCCHHHHHHcCCCceeeCChhHHHHHHHHHHHHHHhCCHHHHH------------------------------
Confidence 99999999999999999999999985 88999999999999999986554
Q ss_pred CChhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHhHHHHHHHhhhccC
Q 007805 240 NMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSK 294 (589)
Q Consensus 240 ~~~a~~~~~~~~~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~af~~~r~~~~ 294 (589)
.+|++++.....++.++++.|...+..++.++|++|++++|++||+|.+
T Consensus 224 ------~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~d~~eg~~af~ekr~p~~ 272 (275)
T PLN02664 224 ------GTKAVLLRSRELSVEQGLDYVATWNSAMLVSDDLNEAVSAQIQKRKPVF 272 (275)
T ss_pred ------HHHHHHHHHhcCCHHHHHHHHHHHHHHhccChhHHHHHHHHhccCCCCC
Confidence 4467777777778999999999999999999999999999999998875
No 54
>PRK07938 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=2.7e-49 Score=392.27 Aligned_cols=247 Identities=26% Similarity=0.351 Sum_probs=216.4
Q ss_pred EEEEEecCcEEEEEeCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCCcCCCCchhhhhccCCCcccccchh
Q 007805 6 VTMEVGNDGVAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDV 85 (589)
Q Consensus 6 ~~~~~~~~~v~~i~l~~p~~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~ 85 (589)
+.++..+++|++||||||+.|++|.+|+.+|.++++.++.|+++|+|||||.|++||+|+|++++...............
T Consensus 3 ~~~~~~~~~v~~itlnrp~~Nal~~~~~~~l~~~l~~~~~d~~vr~vVltg~G~~F~aG~Dl~~~~~~~~~~~~~~~~~~ 82 (249)
T PRK07938 3 ITSTTPEPGIAEVTVDYPPVNALPSAGWFALADAITAAGADPDTRVVVLRAEGRGFNAGVDIKELQATPGFTALIDANRG 82 (249)
T ss_pred eeecccCCCEEEEEECCCCcccCCHHHHHHHHHHHHHhhcCCCeEEEEEECCCCceecCcCHHHHhhccchhHHHHHHHH
Confidence 45554478999999999988999999999999999999999999999999999999999999987532111111111122
Q ss_pred HHHHHHHHHHhCCCcEEEEeCCcccchhhHHhhhcCEEEEeCCceEeccccccCCCCChhhhhhHhhhcCHHHHHHHHHc
Q 007805 86 SVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLL 165 (589)
Q Consensus 86 ~~~~~~~~l~~~~kp~iaav~G~a~GgG~~lala~D~~ia~~~a~~~~pe~~~Gl~p~~g~~~~l~~~~G~~~a~~l~lt 165 (589)
...++ ..+.++|||+||+|||+|+|||++|+++||+||++++++|++||+++|++ |++++|++++|..++++|+++
T Consensus 83 ~~~~~-~~i~~~~kPvIAav~G~a~GgG~~Lal~cD~ria~~~a~f~~pe~~~G~~---g~~~~l~~~vg~~~a~~l~lt 158 (249)
T PRK07938 83 CFAAF-RAVYECAVPVIAAVHGFCLGGGIGLVGNADVIVASDDATFGLPEVDRGAL---GAATHLQRLVPQHLMRALFFT 158 (249)
T ss_pred HHHHH-HHHHhCCCCEEEEEcCEEeehHHHHHHhCCEEEEeCCCEeeCccceecCc---hhHHHHHHhcCHHHHHHHHHh
Confidence 33455 67899999999999999999999999999999999999999999999986 456789999999999999999
Q ss_pred CCCCCHHHHHHcCCcceecCchHHHHHHHHHHHHHHhcChhhhhhhhccCCCCChHHHHHHHHHHHHHHHHhCCCChhHH
Q 007805 166 SKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPNMPQHQ 245 (589)
Q Consensus 166 g~~~~a~~A~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 245 (589)
|++++|+||+++||||+|||++++++++.+++++|++.||.+++
T Consensus 159 g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~a~~------------------------------------ 202 (249)
T PRK07938 159 AATITAAELHHFGSVEEVVPRDQLDEAALEVARKIAAKDTRVIR------------------------------------ 202 (249)
T ss_pred CCcCCHHHHHHCCCccEEeCHHHHHHHHHHHHHHHHhCCHHHHH------------------------------------
Confidence 99999999999999999999999999999999999999886554
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHhHHHHHHHhhhc
Q 007805 246 ACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRAT 292 (589)
Q Consensus 246 ~~~~~~~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~af~~~r~~ 292 (589)
.+|+.++.....+++++++.|...+..++.++|++|++++|++||+|
T Consensus 203 ~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~~~d~~eg~~af~ekr~p 249 (249)
T PRK07938 203 AAKEALNGIDPQDVERSYRWEQGFTFELNLAGVSDEHRDAFVEKRKA 249 (249)
T ss_pred HHHHHHHhhccCCHHHHHHHHHHHHHHHhcCccHHHHHHHHHhcCCC
Confidence 45677777777788999999999999999999999999999999875
No 55
>PRK06688 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=7.1e-49 Score=393.02 Aligned_cols=251 Identities=31% Similarity=0.446 Sum_probs=226.1
Q ss_pred CcEEEEEecCcEEEEEeCCC-CCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCCcCCCCchhhhhccCCCccccc
Q 007805 4 PRVTMEVGNDGVAIITLINP-PVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLM 82 (589)
Q Consensus 4 ~~~~~~~~~~~v~~i~l~~p-~~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~ 82 (589)
+.+.+++ +++|++|+|||| +.|++|.+|+++|.++++.++.|+++|+|||||.|++||+|+|++++....... ..+
T Consensus 5 ~~i~~~~-~~~v~~i~lnrp~~~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~--~~~ 81 (259)
T PRK06688 5 TDLLVEL-EDGVLTITINRPDKKNALTAAMYQALADALEAAATDPAVRVVVLTGAGRAFSAGGDIKDFPKAPPKP--PDE 81 (259)
T ss_pred CceEEEE-ECCEEEEEecCcccccCCCHHHHHHHHHHHHHHhcCCCceEEEEECCCCCccCccCHHHHhccCcch--HHH
Confidence 4688888 789999999999 579999999999999999999999999999999999999999999876532211 122
Q ss_pred chhHHHHHHHHHHhCCCcEEEEeCCcccchhhHHhhhcCEEEEeCCceEeccccccCCCCChhhhhhHhhhcCHHHHHHH
Q 007805 83 PDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEM 162 (589)
Q Consensus 83 ~~~~~~~~~~~l~~~~kp~iaav~G~a~GgG~~lala~D~~ia~~~a~~~~pe~~~Gl~p~~g~~~~l~~~~G~~~a~~l 162 (589)
.....+++ +.+.++|||+||+|||+|+|||++|+++|||||++++++|++||+++|++|++|++++|++++|..+|+++
T Consensus 82 ~~~~~~~~-~~l~~~~kp~Iaav~G~a~GgG~~lal~cD~ria~~~a~f~~pe~~~G~~p~~g~~~~l~~~~G~~~a~~l 160 (259)
T PRK06688 82 LAPVNRFL-RAIAALPKPVVAAVNGPAVGVGVSLALACDLVYASESAKFSLPFAKLGLCPDAGGSALLPRLIGRARAAEM 160 (259)
T ss_pred HHHHHHHH-HHHHcCCCCEEEEECCeeecHHHHHHHhCCEEEecCCCEecCchhhcCCCCCcchhhHHHHHhhHHHHHHH
Confidence 33344566 67899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCCCCHHHHHHcCCcceecCchHHHHHHHHHHHHHHhcChhhhhhhhccCCCCChHHHHHHHHHHHHHHHHhCCCCh
Q 007805 163 MLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPNMP 242 (589)
Q Consensus 163 ~ltg~~~~a~~A~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (589)
+++|++++|+||+++||||+++|++++.+++.++|+++++.||.+++
T Consensus 161 ~l~g~~~~a~eA~~~Glv~~v~~~~~l~~~a~~~a~~i~~~~~~a~~--------------------------------- 207 (259)
T PRK06688 161 LLLGEPLSAEEALRIGLVNRVVPAAELDAEADAQAAKLAAGPASALR--------------------------------- 207 (259)
T ss_pred HHhCCccCHHHHHHcCCcceecCHHHHHHHHHHHHHHHHhCCHHHHH---------------------------------
Confidence 99999999999999999999999999999999999999998875443
Q ss_pred hHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHhHHHHHHHhhhccC
Q 007805 243 QHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSK 294 (589)
Q Consensus 243 a~~~~~~~~~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~af~~~r~~~~ 294 (589)
.+|+.++.....++++++..|.+.+..++.++++++++++|++||+|++
T Consensus 208 ---~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~af~~~~~p~~ 256 (259)
T PRK06688 208 ---YTKRAINAATLTELEEALAREAAGFGRLLRTPDFREGATAFIEKRKPDF 256 (259)
T ss_pred ---HHHHHHHhhhhCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHcCCCCCC
Confidence 3467777777788999999999999999999999999999999988774
No 56
>TIGR03210 badI 2-ketocyclohexanecarboxyl-CoA hydrolase. Members of this protein family are 2-ketocyclohexanecarboxyl-CoA hydrolase, a ring-opening enzyme that acts in catabolism of molecules such as benzoyl-CoA and cyclohexane carboxylate. It converts -ketocyclohexanecarboxyl-CoA to pimelyl-CoA. It is not sensitive to oxygen.
Probab=100.00 E-value=7.2e-49 Score=391.14 Aligned_cols=251 Identities=27% Similarity=0.319 Sum_probs=213.9
Q ss_pred CCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCC-CCCcCCCCchhhhhccCCCccc
Q 007805 3 APRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNG-GRFSGGFDINVFQKVHGAGDVS 80 (589)
Q Consensus 3 ~~~~~~~~~~~~v~~i~l~~p~-~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g-~~F~aG~Dl~~~~~~~~~~~~~ 80 (589)
|+++.+++ +++|++||||||+ .|++|.+|+.+|.++++.++.|+++|+|||||.| ++||+|+|++++..... . ..
T Consensus 1 ~~~i~~~~-~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~vr~vVl~g~g~~~F~aG~Dl~~~~~~~~-~-~~ 77 (256)
T TIGR03210 1 YEDILYEK-RNGIAWIMINRPAKMNAFRGQTCDELIHALKDAGYDRQIGVIVLAGAGDKAFCTGGDQSTHDGGYD-G-RG 77 (256)
T ss_pred CCceEEEe-eCCEEEEEEcCCccccCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCceecCcChHHHhcccc-c-hh
Confidence 56788998 7899999999996 7999999999999999999999999999999998 69999999998743111 1 11
Q ss_pred ccchhHHHHHHHHHHhCCCcEEEEeCCcccchhhHHhhhcCEEEEeCCceEeccccccCCCCChhhhhhHhhhcCHHHHH
Q 007805 81 LMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAI 160 (589)
Q Consensus 81 ~~~~~~~~~~~~~l~~~~kp~iaav~G~a~GgG~~lala~D~~ia~~~a~~~~pe~~~Gl~p~~g~~~~l~~~~G~~~a~ 160 (589)
.+......++ ..+.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|+++++++|++++|..+|+
T Consensus 78 ~~~~~~~~~~-~~l~~~~kPvIaav~G~a~GgG~~lal~cD~~ia~~~a~f~~pe~~~G~~~~~~~~~~l~~~vG~~~A~ 156 (256)
T TIGR03210 78 TIGLPMEELH-SAIRDVPKPVIARVQGYAIGGGNVLVTICDLTIASEKAQFGQVGPKVGSVDPGYGTALLARVVGEKKAR 156 (256)
T ss_pred HHHHHHHHHH-HHHHhCCCCEEEEECCEEehhhHHHHHhCCEEEEeCCCEEecccccccccCCccHHHHHHHHhCHHHHH
Confidence 1112233455 678999999999999999999999999999999999999999999999998888899999999999999
Q ss_pred HHHHcCCCCCHHHHHHcCCcceecCchHHHHHHHHHHHHHHhcChhhhhhhhccCCCCChHHHHHHHHHHHHHHHHhCCC
Q 007805 161 EMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPN 240 (589)
Q Consensus 161 ~l~ltg~~~~a~~A~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (589)
+++++|++++|+||+++||||+|||++++.+++.+++++|++.||.+++
T Consensus 157 ~lll~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~ia~~~~~a~~------------------------------- 205 (256)
T TIGR03210 157 EIWYLCRRYTAQEALAMGLVNAVVPHDQLDAEVQKWCDEIVEKSPTAIA------------------------------- 205 (256)
T ss_pred HHHHhCCCcCHHHHHHcCCceeeeCHHHHHHHHHHHHHHHHhCCHHHHH-------------------------------
Confidence 9999999999999999999999999999999999999999999986554
Q ss_pred ChhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHhHHHHHHHhhhccC
Q 007805 241 MPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSK 294 (589)
Q Consensus 241 ~~a~~~~~~~~~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~af~~~r~~~~ 294 (589)
.+|++++......... ...|...+..++.|+|+++++.+|++||+|++
T Consensus 206 -----~~K~~l~~~~~~~~~~-~~~~~~~~~~~~~~~d~~e~~~af~~kr~p~~ 253 (256)
T TIGR03210 206 -----IAKRSFNMDTAHQRGI-AGMGMYALKLYYDTAESREGVKAFQEKRKPEF 253 (256)
T ss_pred -----HHHHHHHHhhcccchH-HHHHHHHHHHHccChhHHHHHHHHhccCCCCC
Confidence 3355555443322111 12356788889999999999999999998875
No 57
>PRK07659 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=4.6e-49 Score=393.71 Aligned_cols=251 Identities=23% Similarity=0.285 Sum_probs=223.2
Q ss_pred CcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCCcCCCCchhhhhccCCCccccc
Q 007805 4 PRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLM 82 (589)
Q Consensus 4 ~~~~~~~~~~~v~~i~l~~p~-~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~ 82 (589)
+++.+++ +++|++|+||||+ .|++|.+|+.+|.++++.+ .|+++|+|||||.|++||+|+|++++...........+
T Consensus 6 ~~v~~~~-~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~-~d~~vrvvvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~ 83 (260)
T PRK07659 6 ESVVVKY-EGRVATIMLNRPEALNALDEPMLKELLQALKEV-AESSAHIVVLRGNGRGFSAGGDIKMMLSSNDESKFDGV 83 (260)
T ss_pred ceEEEEe-eCCEEEEEeCCcccccCCCHHHHHHHHHHHHHh-cCCCeeEEEEECCCCCcccccCHHHHhhccCchhHHHH
Confidence 4588888 7899999999996 6999999999999999999 58899999999999999999999987542211111222
Q ss_pred chhHHHHHHHHHHhCCCcEEEEeCCcccchhhHHhhhcCEEEEeCCceEeccccccCCCCChhhhhhHhhhcCHHHHHHH
Q 007805 83 PDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEM 162 (589)
Q Consensus 83 ~~~~~~~~~~~l~~~~kp~iaav~G~a~GgG~~lala~D~~ia~~~a~~~~pe~~~Gl~p~~g~~~~l~~~~G~~~a~~l 162 (589)
.....+++ ..+..+||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|..+|++|
T Consensus 84 ~~~~~~~~-~~l~~~~~pvIaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~L~~~vg~~~a~~l 162 (260)
T PRK07659 84 MNTISEIV-VTLYTMPKLTISAIHGPAAGLGLSIALTADYVIADISAKLAMNFIGIGLIPDGGGHFFLQKRVGENKAKQI 162 (260)
T ss_pred HHHHHHHH-HHHHhCCCCEEEEecCceecHHHHHHHhCCEEEEcCCCEEcCchhhcCCCCCCchhhhHHHhcCHHHHHHH
Confidence 22334555 66889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCCCCHHHHHHcCCcceecCchHHHHHHHHHHHHHHhcChhhhhhhhccCCCCChHHHHHHHHHHHHHHHHhCCCCh
Q 007805 163 MLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPNMP 242 (589)
Q Consensus 163 ~ltg~~~~a~~A~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (589)
+++|++++|+||+++||||++| ++++.+++.++++++++.||.+++
T Consensus 163 ~ltg~~~~a~eA~~~Glv~~vv-~~~~~~~a~~~a~~l~~~~~~a~~--------------------------------- 208 (260)
T PRK07659 163 IWEGKKLSATEALDLGLIDEVI-GGDFQTAAKQKISEWLQKPLKAMI--------------------------------- 208 (260)
T ss_pred HHhCCccCHHHHHHcCChHHHh-hhHHHHHHHHHHHHHHhCCHHHHH---------------------------------
Confidence 9999999999999999999999 788999999999999999876543
Q ss_pred hHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHhHHHHHHHhhhccC
Q 007805 243 QHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSK 294 (589)
Q Consensus 243 a~~~~~~~~~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~af~~~r~~~~ 294 (589)
.+|++++.....++++.++.|.+.+..++.++|+++++.+|++||+|++
T Consensus 209 ---~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~~~~~~egi~af~~kr~p~~ 257 (260)
T PRK07659 209 ---ETKQIYCELNRSQLEQVLQLEKRAQYAMRQTADHKEGIRAFLEKRLPVF 257 (260)
T ss_pred ---HHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCHhHHHHHHHHhcCCCCCC
Confidence 4567777777788999999999999999999999999999999998875
No 58
>PRK11423 methylmalonyl-CoA decarboxylase; Provisional
Probab=100.00 E-value=5.8e-49 Score=392.66 Aligned_cols=253 Identities=21% Similarity=0.296 Sum_probs=221.9
Q ss_pred CCCCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcC--CCCCcCCCCchhhhhccCCC
Q 007805 1 MAAPRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGN--GGRFSGGFDINVFQKVHGAG 77 (589)
Q Consensus 1 M~~~~~~~~~~~~~v~~i~l~~p~-~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~--g~~F~aG~Dl~~~~~~~~~~ 77 (589)
|||+.+.+++ +++|++||||||+ .|++|.+|+.+|.++++.++.|+ +|+|||||. |++||+|.|++++......
T Consensus 1 ~~~~~~~~~~-~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~-v~~vvltg~~~~~~FcaG~Dl~~~~~~~~~- 77 (261)
T PRK11423 1 MSMQYVNVVT-INKIATITFNNPAKRNALSKVLIDDLMQALSDLNRPE-IRVVILRAPSGSKVWSAGHDIHELPSGGRD- 77 (261)
T ss_pred CCccceEEEe-ECCEEEEEEcCccccCCCCHHHHHHHHHHHHHHhcCC-ceEEEEECCCCCCeeECCcCHHHHhhcccc-
Confidence 9999999999 8999999999996 79999999999999999999887 999999986 3799999999987532111
Q ss_pred cccccchhHHHHHHHHHHhCCCcEEEEeCCcccchhhHHhhhcCEEEEeCCceEeccccccCCCCChhhhhhHhhhcCHH
Q 007805 78 DVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLS 157 (589)
Q Consensus 78 ~~~~~~~~~~~~~~~~l~~~~kp~iaav~G~a~GgG~~lala~D~~ia~~~a~~~~pe~~~Gl~p~~g~~~~l~~~~G~~ 157 (589)
...+.....+++ +.+..+||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|+++++++++|..
T Consensus 78 -~~~~~~~~~~l~-~~i~~~~kPvIaav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~~~~g~~~~l~~~vg~~ 155 (261)
T PRK11423 78 -PLSYDDPLRQIL-RMIQKFPKPVIAMVEGSVWGGAFELIMSCDLIIAASTSTFAMTPANLGVPYNLSGILNFTNDAGFH 155 (261)
T ss_pred -HHHHHHHHHHHH-HHHHhCCCCEEEEEecEEechHHHHHHhCCEEEecCCCEecCchhhcCCCCCccHHHHHHHHhHHH
Confidence 111222334555 678999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCCCCHHHHHHcCCcceecCchHHHHHHHHHHHHHHhcChhhhhhhhccCCCCChHHHHHHHHHHHHHHHHh
Q 007805 158 KAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKT 237 (589)
Q Consensus 158 ~a~~l~ltg~~~~a~~A~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (589)
++++++++|++++|+||+++||||+|||++++++.+.++++++++.||.+++
T Consensus 156 ~a~~l~l~g~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~l~~~~~~a~~---------------------------- 207 (261)
T PRK11423 156 IVKEMFFTASPITAQRALAVGILNHVVEVEELEDFTLQMAHHISEKAPLAIA---------------------------- 207 (261)
T ss_pred HHHHHHHcCCCcCHHHHHHcCCcCcccCHHHHHHHHHHHHHHHHhcCHHHHH----------------------------
Confidence 9999999999999999999999999999999999999999999999986544
Q ss_pred CCCChhHHHHHHHHHHhhc-CCH-HHHHHHHHHHHHHHhCCHHHHhHHHHHHHhhhccC
Q 007805 238 APNMPQHQACLDVIEEGIV-HGG-YSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSK 294 (589)
Q Consensus 238 ~~~~~a~~~~~~~~~~~~~-~~~-~~~l~~E~~~~~~~~~s~~~~~~i~af~~~r~~~~ 294 (589)
.+|++++.... ... ...++.|.+.+..++.|+|+++++.+|++||++++
T Consensus 208 --------~~K~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~eg~~af~~kr~p~~ 258 (261)
T PRK11423 208 --------VIKEQLRVLGEAHPMNPDEFERIQGLRRAVYDSEDYQEGMNAFLEKRKPVF 258 (261)
T ss_pred --------HHHHHHHhhcccCCcchHHHHHHHHHHHHHhCChhHHHHHHHHhccCCCCC
Confidence 34566664432 233 67888899999999999999999999999998875
No 59
>PRK07260 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=8.9e-49 Score=390.75 Aligned_cols=251 Identities=23% Similarity=0.327 Sum_probs=224.4
Q ss_pred CCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCCcCCCCchhhhhccCCCcccc
Q 007805 3 APRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSL 81 (589)
Q Consensus 3 ~~~~~~~~~~~~v~~i~l~~p~-~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~ 81 (589)
++++.+++ +++|++|+||||+ .|++|.+|+.+|.++++.++.|+++|+|||||.|++||+|+|++++...........
T Consensus 1 ~~~i~~~~-~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~ 79 (255)
T PRK07260 1 FEHIIYEV-EDDLATLTLNRPEVSNGFNIPMCQEILEALRLAEEDPSVRFLLINANGKVFSVGGDLVEMKRAVDEDDVQS 79 (255)
T ss_pred CCceEEEE-ECCEEEEEeCCcccccCCCHHHHHHHHHHHHHHhcCCCceEEEEECCCCCcccccCHHHHHhhccccchhh
Confidence 46788998 7899999999996 699999999999999999999999999999999999999999998764221111111
Q ss_pred ---cchhHHHHHHHHHHhCCCcEEEEeCCcccchhhHHhhhcCEEEEeCCceEeccccccCCCCChhhhhhHhhhcCHHH
Q 007805 82 ---MPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSK 158 (589)
Q Consensus 82 ---~~~~~~~~~~~~l~~~~kp~iaav~G~a~GgG~~lala~D~~ia~~~a~~~~pe~~~Gl~p~~g~~~~l~~~~G~~~ 158 (589)
+.....+++ ..+.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|..+
T Consensus 80 ~~~~~~~~~~~~-~~l~~~~kPvIaav~G~a~GgG~~lala~D~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vg~~~ 158 (255)
T PRK07260 80 LVKIAELVNEIS-FAIKQLPKPVIMCVDGAVAGAAANMAVAADFCIASTKTKFIQAFVGVGLAPDAGGLFLLTRAIGLNR 158 (255)
T ss_pred HHHHHHHHHHHH-HHHHcCCCCEEEEecCeeehhhHHHHHhCCEEEEeCCCEEechHhhcCCCCCCchhhhhHHhhCHHH
Confidence 122234455 6789999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCCCCHHHHHHcCCcceecCchHHHHHHHHHHHHHHhcChhhhhhhhccCCCCChHHHHHHHHHHHHHHHHhC
Q 007805 159 AIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTA 238 (589)
Q Consensus 159 a~~l~ltg~~~~a~~A~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (589)
+++|+++|++++|+||+++||||++||++++.+++.++++++++.+|.+++
T Consensus 159 a~~l~l~g~~~sa~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~a~~----------------------------- 209 (255)
T PRK07260 159 ATHLAMTGEALTAEKALEYGFVYRVAESEKLEKTCEQLLKKLRRGSSNSYA----------------------------- 209 (255)
T ss_pred HHHHHHhCCccCHHHHHHcCCcceecCHhHHHHHHHHHHHHHHcCCHHHHH-----------------------------
Confidence 999999999999999999999999999999999999999999999886554
Q ss_pred CCChhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHhHHHHHHHhhh
Q 007805 239 PNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRA 291 (589)
Q Consensus 239 ~~~~a~~~~~~~~~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~af~~~r~ 291 (589)
.+|+.++.....++++.+..|...+..++.|+|+++++++|++||+
T Consensus 210 -------~~K~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~e~~~af~~kr~ 255 (255)
T PRK07260 210 -------AIKSLVWESFFKGWEDYAKLELALQESLAFKEDFKEGVRAFSERRR 255 (255)
T ss_pred -------HHHHHHHHHhhcCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCC
Confidence 4567777777788999999999999999999999999999999885
No 60
>PLN03214 probable enoyl-CoA hydratase/isomerase; Provisional
Probab=100.00 E-value=7.7e-49 Score=394.42 Aligned_cols=257 Identities=19% Similarity=0.254 Sum_probs=225.0
Q ss_pred CCcEEEEEecCcEEEEEeCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCC--CCCcCCCCchhhhhccCCCc-c
Q 007805 3 APRVTMEVGNDGVAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNG--GRFSGGFDINVFQKVHGAGD-V 79 (589)
Q Consensus 3 ~~~~~~~~~~~~v~~i~l~~p~~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g--~~F~aG~Dl~~~~~~~~~~~-~ 79 (589)
.+.+.+++++++|++||||||+.|++|.+|+.+|.+++++++.|+++|+|||||.| ++||+|.|++++........ .
T Consensus 10 ~~~i~~~~~~~~Va~itlnr~~~Nal~~~~~~eL~~al~~~~~d~~vr~vVltg~g~~~~FcaG~Dl~~~~~~~~~~~~~ 89 (278)
T PLN03214 10 TPGVRVDRRPGGIAVVWLAKEPVNSMTLAMWRSLDDALTALENDPTVRGVVFASGLRRDVFTAGNDIAELYAPKTSAARY 89 (278)
T ss_pred CCceEEEEcCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEeCCCCCCcccCccCHHHHhccccchHHH
Confidence 35788887458899999999988999999999999999999999999999999997 68999999998753211110 1
Q ss_pred cccchhHHHHHHHHHHhCCCcEEEEeCCcccchhhHHhhhcCEEEEeCCceEeccccccCC-CCChhhhhhHhhhcCHHH
Q 007805 80 SLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGV-IPGFGGTQRLPRLVGLSK 158 (589)
Q Consensus 80 ~~~~~~~~~~~~~~l~~~~kp~iaav~G~a~GgG~~lala~D~~ia~~~a~~~~pe~~~Gl-~p~~g~~~~l~~~~G~~~ 158 (589)
..+......++ ..+.++||||||+|||+|+|||++|+++|||||++++++|++||+++|+ +|++|++++|++++|..+
T Consensus 90 ~~~~~~~~~~~-~~l~~~~kPvIAaV~G~a~GgG~~lalacD~ria~~~a~f~~pe~~lGl~~p~~~~~~~l~~~~G~~~ 168 (278)
T PLN03214 90 AEFWLTQTTFL-VRLLRSRLATVCAIRGACPAGGCAVSLCCDYRLQTTEGTMGLNEVALGIPVPKFWARLFMGRVIDRKV 168 (278)
T ss_pred HHHHHHHHHHH-HHHHcCCCCEEEEEcCcccchHHHHHHhCCEEEecCCCEecCcHHHhCCCCCChhHHHHHHHhcCHHH
Confidence 11111122345 6689999999999999999999999999999999999999999999999 599999999999999999
Q ss_pred HHHHHHcCCCCCHHHHHHcCCcceecCchHHHHHHHHHHHHHHhcChhhhhhhhccCCCCChHHHHHHHHHHHHHHHHhC
Q 007805 159 AIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTA 238 (589)
Q Consensus 159 a~~l~ltg~~~~a~~A~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (589)
+++|++||++++|+||+++||||+|||.+++++++.+++++|++.||.+++
T Consensus 169 a~~llltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~l~~~~~~a~~----------------------------- 219 (278)
T PLN03214 169 AESLLLRGRLVRPAEAKQLGLIDEVVPAAALMEAAASAMERALKLPSAARA----------------------------- 219 (278)
T ss_pred HHHHHHcCCccCHHHHHHcCCCcEecChHHHHHHHHHHHHHHHcCCHHHHH-----------------------------
Confidence 999999999999999999999999999999999999999999999886543
Q ss_pred CCChhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHhHHHHHHHhhhccCCC
Q 007805 239 PNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKVP 296 (589)
Q Consensus 239 ~~~~a~~~~~~~~~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~af~~~r~~~~~~ 296 (589)
.+|+.++.....+++++++.|.+.+..++.|+|+++++++|++|.+.||-+
T Consensus 220 -------~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~s~d~~egi~aflek~~~~~~~ 270 (278)
T PLN03214 220 -------ATKALLREEFSAAWEAYYEEEAKGGWKMLSEPSIIKALGGVMERLSSGKEK 270 (278)
T ss_pred -------HHHHHHHhhHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccc
Confidence 456777777777889999999999999999999999999999999988754
No 61
>PRK07396 dihydroxynaphthoic acid synthetase; Validated
Probab=100.00 E-value=1.6e-48 Score=392.02 Aligned_cols=253 Identities=26% Similarity=0.364 Sum_probs=217.9
Q ss_pred CCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCC-CCCcCCCCchhhhhccCCCccc
Q 007805 3 APRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNG-GRFSGGFDINVFQKVHGAGDVS 80 (589)
Q Consensus 3 ~~~~~~~~~~~~v~~i~l~~p~-~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g-~~F~aG~Dl~~~~~~~~~~~~~ 80 (589)
++.+.+++ +++|++|+||||+ .|++|.+|+.+|.++++.++.|+++|+|||||.| ++||+|+|++++....... ..
T Consensus 12 ~~~i~~~~-~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~vr~vVltg~g~~~F~aG~Dl~~~~~~~~~~-~~ 89 (273)
T PRK07396 12 YEDILYKS-ADGIAKITINRPEVRNAFRPKTVKEMIDAFADARDDDNIGVIILTGAGDKAFCSGGDQKVRGYGGYVD-DD 89 (273)
T ss_pred CcceEEEe-cCCEEEEEEcCCcccCCCCHHHHHHHHHHHHHHhhCCCceEEEEEeCCCCceEeCcChhhhhcccccc-hh
Confidence 56788888 8899999999996 6999999999999999999999999999999999 5999999999874321111 01
Q ss_pred ccch-hHHHHHHHHHHhCCCcEEEEeCCcccchhhHHhhhcCEEEEeCCceEeccccccCCCCChhhhhhHhhhcCHHHH
Q 007805 81 LMPD-VSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKA 159 (589)
Q Consensus 81 ~~~~-~~~~~~~~~l~~~~kp~iaav~G~a~GgG~~lala~D~~ia~~~a~~~~pe~~~Gl~p~~g~~~~l~~~~G~~~a 159 (589)
.... ....++ +.+.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|..+|
T Consensus 90 ~~~~~~~~~~~-~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~~~~~~l~~~vG~~~a 168 (273)
T PRK07396 90 GVPRLNVLDLQ-RLIRTCPKPVIAMVAGYAIGGGHVLHLVCDLTIAADNAIFGQTGPKVGSFDGGYGASYLARIVGQKKA 168 (273)
T ss_pred hhhhhHHHHHH-HHHHhCCCCEEEEECCEEehHHHHHHHhCCEEEeeCCcEEecccccccccCCchHHHHHHHHhhHHHH
Confidence 1111 122344 66889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCCCCHHHHHHcCCcceecCchHHHHHHHHHHHHHHhcChhhhhhhhccCCCCChHHHHHHHHHHHHHHHHhCC
Q 007805 160 IEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAP 239 (589)
Q Consensus 160 ~~l~ltg~~~~a~~A~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (589)
++|+++|++++|+||+++||||+|||++++++++.++|++|++.||.+++
T Consensus 169 ~~l~ltg~~~~A~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~------------------------------ 218 (273)
T PRK07396 169 REIWFLCRQYDAQEALDMGLVNTVVPLADLEKETVRWCREMLQNSPMALR------------------------------ 218 (273)
T ss_pred HHHHHhCCCcCHHHHHHcCCcCeecCHHHHHHHHHHHHHHHHhCCHHHHH------------------------------
Confidence 99999999999999999999999999999999999999999999987554
Q ss_pred CChhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHhHHHHHHHhhhccCC
Q 007805 240 NMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKV 295 (589)
Q Consensus 240 ~~~a~~~~~~~~~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~af~~~r~~~~~ 295 (589)
.+|++++.... ..+...+.|.+.+..++.|+|+++++.+|++||+|++.
T Consensus 219 ------~~K~~l~~~~~-~~~~~~~~e~~~~~~~~~~~d~~egi~af~~kr~p~~~ 267 (273)
T PRK07396 219 ------CLKAALNADCD-GQAGLQELAGNATMLFYMTEEAQEGRNAFNEKRQPDFS 267 (273)
T ss_pred ------HHHHHHHhhhc-cHHHHHHHHHHHHHHHhcChhHHHHHHHHhCCCCCCCC
Confidence 33555555433 34555567888899999999999999999999998753
No 62
>PRK08260 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=1.3e-48 Score=397.27 Aligned_cols=258 Identities=24% Similarity=0.345 Sum_probs=220.4
Q ss_pred CCCCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCCcCCCCchhhhhccC-C--
Q 007805 1 MAAPRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHG-A-- 76 (589)
Q Consensus 1 M~~~~~~~~~~~~~v~~i~l~~p~-~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~-~-- 76 (589)
|+|+.+.+++ +++|++|+||||+ .|++|.+|+.+|.++++.++.|+++|+|||||.|++||+|+|++++..... .
T Consensus 1 ~~~~~v~~~~-~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~ 79 (296)
T PRK08260 1 MTYETIRYDV-ADGIATITLNRPDKLNAFTVTMARELIEAFDAADADDAVRAVIVTGAGRAFCAGADLSAGGNTFDLDAP 79 (296)
T ss_pred CCcceEEEee-eCCEEEEEeCCCcccCCCCHHHHHHHHHHHHHHhcCCCeEEEEEECCCCCeecCcChHHhhhccccccc
Confidence 7888899999 8899999999996 699999999999999999999999999999999999999999998753100 0
Q ss_pred ---------Cccc----ccchhHHHHHHHHHHhCCCcEEEEeCCcccchhhHHhhhcCEEEEeCCceEeccccccCCCCC
Q 007805 77 ---------GDVS----LMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPG 143 (589)
Q Consensus 77 ---------~~~~----~~~~~~~~~~~~~l~~~~kp~iaav~G~a~GgG~~lala~D~~ia~~~a~~~~pe~~~Gl~p~ 143 (589)
.... .+......++ ..+..+||||||+|||+|+|||++|+++||+||++++++|++||+++|++|+
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~pkPvIAav~G~a~GgG~~LalacD~ria~~~a~f~~pe~~~Gl~p~ 158 (296)
T PRK08260 80 RTPVEADEEDRADPSDDGVRDGGGRVT-LRIFDSLKPVIAAVNGPAVGVGATMTLAMDIRLASTAARFGFVFGRRGIVPE 158 (296)
T ss_pred ccccccccccccchhHHHHHHHHHHHH-HHHHhCCCCEEEEECCeeehHhHHHHHhCCEEEeeCCCEEecchhhcCcCCC
Confidence 0000 1111122445 6789999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhHhhhcCHHHHHHHHHcCCCCCHHHHHHcCCcceecCchHHHHHHHHHHHHHHhc-ChhhhhhhhccCCCCChHH
Q 007805 144 FGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAAR-RKPWIRSLHRTDKLGSLSE 222 (589)
Q Consensus 144 ~g~~~~l~~~~G~~~a~~l~ltg~~~~a~~A~~~Glv~~vv~~~~l~~~a~~~a~~la~~-~~~~~~~~~~~~~~~~~~~ 222 (589)
+|++++|++++|..+|++|+++|++++|+||+++||||+|||++++++++.+++++|++. +|.+++
T Consensus 159 ~g~~~~l~r~vG~~~A~~llltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~i~~~~~~~a~~------------- 225 (296)
T PRK08260 159 AASSWFLPRLVGLQTALEWVYSGRVFDAQEALDGGLVRSVHPPDELLPAARALAREIADNTSPVSVA------------- 225 (296)
T ss_pred cchhhhHHHhhCHHHHHHHHHcCCccCHHHHHHCCCceeecCHHHHHHHHHHHHHHHHhcCChHHHH-------------
Confidence 999999999999999999999999999999999999999999999999999999999985 665443
Q ss_pred HHHHHHHHHHHHHHhCCCChhHHHHHHHHHHhhcCC-HHHHHHHHHHHHHHHhCCHHHHhHHHHHHHhhhccCCC
Q 007805 223 AREVLKLARLQAKKTAPNMPQHQACLDVIEEGIVHG-GYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKVP 296 (589)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~l~~E~~~~~~~~~s~~~~~~i~af~~~r~~~~~~ 296 (589)
.+|++++...... .......|...+..++.++|+++++.+|++||+|.+.+
T Consensus 226 -----------------------~~K~~l~~~~~~~~~~~~~~~e~~~~~~~~~~~d~~egi~af~~kr~p~f~~ 277 (296)
T PRK08260 226 -----------------------LTRQMMWRMAGADHPMEAHRVDSRAIYSRGRSGDGKEGVSSFLEKRPAVFPG 277 (296)
T ss_pred -----------------------HHHHHHHhcccCCCcHHHHHHHHHHHHHHccChhHHHHHHHHhcCCCCCCCC
Confidence 3456666553221 22334568888999999999999999999999988654
No 63
>PRK08259 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=2e-48 Score=387.20 Aligned_cols=248 Identities=28% Similarity=0.338 Sum_probs=217.9
Q ss_pred CCCCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCCcCCCCchhhhhccCCCcc
Q 007805 1 MAAPRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDV 79 (589)
Q Consensus 1 M~~~~~~~~~~~~~v~~i~l~~p~-~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~ 79 (589)
|+ +++.+++ +++|++|+||||+ .|++|.+|+.+|.++++.++.|+++|+|||||.|++||+|.|++++..... ...
T Consensus 1 ~~-~~i~~~~-~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vvltg~g~~FcaG~Dl~~~~~~~~-~~~ 77 (254)
T PRK08259 1 MS-MSVRVER-NGPVTTVILNRPEVRNAVDGPTAAALADAFRAFDADDAASVAVLWGAGGTFCAGADLKAVGTGRG-NRL 77 (254)
T ss_pred CC-ceEEEEE-ECCEEEEEecCCccccCCCHHHHHHHHHHHHHHhcCCCceEEEEECCCCCccCCcChHHHhcccc-hhh
Confidence 66 5688998 7899999999996 699999999999999999999999999999999999999999998754211 111
Q ss_pred cccchhHHHHHHHHHHhCCCcEEEEeCCcccchhhHHhhhcCEEEEeCCceEeccccccCCCCChhhhhhHhhhcCHHHH
Q 007805 80 SLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKA 159 (589)
Q Consensus 80 ~~~~~~~~~~~~~~l~~~~kp~iaav~G~a~GgG~~lala~D~~ia~~~a~~~~pe~~~Gl~p~~g~~~~l~~~~G~~~a 159 (589)
.. ......+ ..+.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|..++
T Consensus 78 ~~--~~~~~~~-~~~~~~~kPvIaav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~iG~~~a 154 (254)
T PRK08259 78 HP--SGDGPMG-PSRMRLSKPVIAAVSGYAVAGGLELALWCDLRVAEEDAVFGVFCRRWGVPLIDGGTVRLPRLIGHSRA 154 (254)
T ss_pred hh--hhcchhh-hHHhcCCCCEEEEECCEEEhHHHHHHHhCCEEEecCCCEecCcccccCCCCCccHHHHHHHHhCHHHH
Confidence 10 0001112 22347999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCCCCHHHHHHcCCcceecCchHHHHHHHHHHHHHHhcChhhhhhhhccCCCCChHHHHHHHHHHHHHHHHhCC
Q 007805 160 IEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAP 239 (589)
Q Consensus 160 ~~l~ltg~~~~a~~A~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (589)
++++++|++++|+||+++||||+|||++++++++.++|++|++.||.+++
T Consensus 155 ~~lll~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~a~~------------------------------ 204 (254)
T PRK08259 155 MDLILTGRPVDADEALAIGLANRVVPKGQARAAAEELAAELAAFPQTCLR------------------------------ 204 (254)
T ss_pred HHHHHcCCccCHHHHHHcCCCCEeeChhHHHHHHHHHHHHHHhCCHHHHH------------------------------
Confidence 99999999999999999999999999999999999999999999986554
Q ss_pred CChhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHhHHHHHHHhhh
Q 007805 240 NMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRA 291 (589)
Q Consensus 240 ~~~a~~~~~~~~~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~af~~~r~ 291 (589)
.+|++++.....+++++++.|...+..++. +|++|++.+|++|++
T Consensus 205 ------~~K~~~~~~~~~~~~~~~~~e~~~~~~~~~-~d~~egi~af~~~~~ 249 (254)
T PRK08259 205 ------ADRLSALEQWGLPEEAALANEFAHGLAVLA-AEALEGAARFAAGAG 249 (254)
T ss_pred ------HHHHHHHHhhcCCHHHHHHHHHHHHHHHHh-hHHHHHHHHHHhhhc
Confidence 446777777777899999999998888887 999999999998876
No 64
>PRK06144 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=1.5e-48 Score=390.13 Aligned_cols=250 Identities=26% Similarity=0.409 Sum_probs=216.0
Q ss_pred CCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCC-CCCcCCCCchhhhhccCCCccc
Q 007805 3 APRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNG-GRFSGGFDINVFQKVHGAGDVS 80 (589)
Q Consensus 3 ~~~~~~~~~~~~v~~i~l~~p~-~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g-~~F~aG~Dl~~~~~~~~~~~~~ 80 (589)
++.+.+++ +++|++|+||||+ .|++|.+|+++|.+++++++.|+++|+|||||.| ++||+|+|++++..........
T Consensus 7 ~~~v~~~~-~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~v~~vVltg~g~~~F~aG~Dl~~~~~~~~~~~~~ 85 (262)
T PRK06144 7 TDELLLEV-RGGIARITFNRPAARNAMTWAMYEGLAEICEAIAADPSIRAVVLRGAGDKAFVAGTDIAQFRAFSTAEDAV 85 (262)
T ss_pred CCceEEEe-eCCEEEEEecCCcccCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCceecCcCHHHHhhccchhHHH
Confidence 35788898 7899999999996 6999999999999999999999999999999998 6999999999875432111111
Q ss_pred ccchhHHHHHHHHHHhCCCcEEEEeCCcccchhhHHhhhcCEEEEeCCceEeccccc-cCCCCChhhhhhHhhhcCHHHH
Q 007805 81 LMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELT-LGVIPGFGGTQRLPRLVGLSKA 159 (589)
Q Consensus 81 ~~~~~~~~~~~~~l~~~~kp~iaav~G~a~GgG~~lala~D~~ia~~~a~~~~pe~~-~Gl~p~~g~~~~l~~~~G~~~a 159 (589)
.+......++ ..+.++||||||+|||+|+|||++|+++||+|||+++++|++||++ +|++|++|++++|++++|..+|
T Consensus 86 ~~~~~~~~~~-~~l~~~~kPvIaav~G~a~GgG~~lala~D~~ia~~~a~f~~pe~~~~G~~p~~g~~~~l~~~vG~~~a 164 (262)
T PRK06144 86 AYERRIDRVL-GALEQLRVPTIAAIAGACVGGGAAIAAACDLRIATPSARFGFPIARTLGNCLSMSNLARLVALLGAARV 164 (262)
T ss_pred HHHHHHHHHH-HHHHhCCCCEEEEECCeeeehHHHHHHhCCEEEecCCCEeechhHHhccCCCCccHHHHHHHHhCHHHH
Confidence 1222234455 6688999999999999999999999999999999999999999997 9999999999999999999999
Q ss_pred HHHHHcCCCCCHHHHHHcCCcceecCchHHHHHHHHHHHHHHhcChhhhhhhhccCCCCChHHHHHHHHHHHHHHHHhCC
Q 007805 160 IEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAP 239 (589)
Q Consensus 160 ~~l~ltg~~~~a~~A~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (589)
++++++|++++|+||+++||||+|||++++.+++.++|++|++.||.+++
T Consensus 165 ~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~i~~~~~~a~~------------------------------ 214 (262)
T PRK06144 165 KDMLFTARLLEAEEALAAGLVNEVVEDAALDARADALAELLAAHAPLTLR------------------------------ 214 (262)
T ss_pred HHHHHcCCCcCHHHHHHcCCcCeecCHHHHHHHHHHHHHHHHhCCHHHHH------------------------------
Confidence 99999999999999999999999999999999999999999999986554
Q ss_pred CChhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHhHHHHHHHhhhccC
Q 007805 240 NMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSK 294 (589)
Q Consensus 240 ~~~a~~~~~~~~~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~af~~~r~~~~ 294 (589)
.+|+.++..... .++.+.+.+..++.++|+++++.+|++||++++
T Consensus 215 ------~~K~~l~~~~~~----~l~~~~~~~~~~~~~~~~~e~~~af~~kr~p~~ 259 (262)
T PRK06144 215 ------ATKEALRRLRRE----GLPDGDDLIRMCYMSEDFREGVEAFLEKRPPKW 259 (262)
T ss_pred ------HHHHHHHHhhhc----CHHHHHHHHHHHhcChHHHHHHHHHhcCCCCCC
Confidence 335566554333 334466788899999999999999999998775
No 65
>PRK06023 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=2.6e-48 Score=386.20 Aligned_cols=247 Identities=24% Similarity=0.403 Sum_probs=217.8
Q ss_pred CCCCcEEEEEecC---cEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCCcCCCCchhhhhccCC
Q 007805 1 MAAPRVTMEVGND---GVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGA 76 (589)
Q Consensus 1 M~~~~~~~~~~~~---~v~~i~l~~p~-~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~ 76 (589)
|+ +.+.+++ ++ +|++|+||||+ .|++|.+|+++|.++++.+++|+++|+|||||.|++||+|.|++++......
T Consensus 1 m~-~~i~~~~-~~~~~~v~~itlnrp~~~Nal~~~~~~~L~~~l~~~~~d~~vr~vVl~g~g~~FcaG~Dl~~~~~~~~~ 78 (251)
T PRK06023 1 MT-DHILVER-PGAHPGVQVIRFNRPEKKNAITRAMYATMAKALKAADADDAIRAHVFLGTEGCFSAGNDMQDFLAAAMG 78 (251)
T ss_pred CC-ceEEEEe-ecCcCcEEEEEecCcccccCCCHHHHHHHHHHHHHHhcCCCceEEEEECCCCCeecCcCHHHHhhcccc
Confidence 66 4688888 55 59999999996 7999999999999999999999999999999999999999999987542111
Q ss_pred CcccccchhHHHHHHHHHHhCCCcEEEEeCCcccchhhHHhhhcCEEEEeCCceEeccccccCCCCChhhhhhHhhhcCH
Q 007805 77 GDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGL 156 (589)
Q Consensus 77 ~~~~~~~~~~~~~~~~~l~~~~kp~iaav~G~a~GgG~~lala~D~~ia~~~a~~~~pe~~~Gl~p~~g~~~~l~~~~G~ 156 (589)
. ..+.....+++ ..+.++||||||+|||+|+|||++|+++|||||++++++|++||+++|++|++|++++|++++|.
T Consensus 79 ~--~~~~~~~~~~~-~~l~~~~kPvIAav~G~a~GgG~~la~acD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~~g~ 155 (251)
T PRK06023 79 G--TSFGSEILDFL-IALAEAEKPIVSGVDGLAIGIGTTIHLHCDLTFASPRSLFRTPFVDLALVPEAGSSLLAPRLMGH 155 (251)
T ss_pred c--hhhHHHHHHHH-HHHHhCCCCEEEEeCCceecHHHHHHHhCCEEEEeCCCEecCcccccCCCCCchHHHHHHHHHhH
Confidence 1 11222333555 67899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCCCCHHHHHHcCCcceecCchHHHHHHHHHHHHHHhcChhhhhhhhccCCCCChHHHHHHHHHHHHHHHH
Q 007805 157 SKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKK 236 (589)
Q Consensus 157 ~~a~~l~ltg~~~~a~~A~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (589)
.++++++++|++++|+||+++||||+|||++++.+++.+++++|++.||.+++
T Consensus 156 ~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~l~~~~~~a~~--------------------------- 208 (251)
T PRK06023 156 QRAFALLALGEGFSAEAAQEAGLIWKIVDEEAVEAETLKAAEELAAKPPQALQ--------------------------- 208 (251)
T ss_pred HHHHHHHHhCCCCCHHHHHHcCCcceeeCHHHHHHHHHHHHHHHHhCCHHHHH---------------------------
Confidence 99999999999999999999999999999999999999999999999986544
Q ss_pred hCCCChhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHhHHHHHHHh
Q 007805 237 TAPNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQ 289 (589)
Q Consensus 237 ~~~~~~a~~~~~~~~~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~af~~~ 289 (589)
.+|++++... .++.++++.|.+.+..++.++|+++++++|++|
T Consensus 209 ---------~~K~~l~~~~-~~l~~~~~~e~~~~~~~~~~~~~~e~~~af~e~ 251 (251)
T PRK06023 209 ---------IARDLMRGPR-EDILARIDEEAKHFAARLKSAEARAAFEAFMRR 251 (251)
T ss_pred ---------HHHHHHHhch-hhHHHHHHHHHHHHHHHhCCHHHHHHHHHHhcC
Confidence 3456666543 468888899999999999999999999999975
No 66
>PRK07327 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=2e-48 Score=390.52 Aligned_cols=251 Identities=25% Similarity=0.291 Sum_probs=212.1
Q ss_pred CCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCCcCCCCchhhhhccCCCc-cc
Q 007805 3 APRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGD-VS 80 (589)
Q Consensus 3 ~~~~~~~~~~~~v~~i~l~~p~-~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~-~~ 80 (589)
|+.+.++..+++|++|+||||+ .|++|.+|+.+|.+++++++.|+++|+|||||.|++||+|.|++++........ ..
T Consensus 10 ~~~i~~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~ 89 (268)
T PRK07327 10 YPALRFDRPPPGVLEIVLNGPGALNAADARMHRELADIWRDVDRDPDVRVVLIRGEGKAFSAGGDLALVEEMADDFEVRA 89 (268)
T ss_pred CCeEEEEecCCCEEEEEEcCCCccCCCCHHHHHHHHHHHHHhhhCCCceEEEEECCCCCcccccCHHHHhhccCcHHHHH
Confidence 5778888744789999999997 699999999999999999999999999999999999999999998754211110 11
Q ss_pred ccchhHHHHHHHHHHhCCCcEEEEeCCcccchhhHHhhhcCEEEEeCCceEeccccccCCCCChhhhhhHhhhcCHHHHH
Q 007805 81 LMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAI 160 (589)
Q Consensus 81 ~~~~~~~~~~~~~l~~~~kp~iaav~G~a~GgG~~lala~D~~ia~~~a~~~~pe~~~Gl~p~~g~~~~l~~~~G~~~a~ 160 (589)
........++ ..+.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++||+++|..+|+
T Consensus 90 ~~~~~~~~~~-~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a~ 168 (268)
T PRK07327 90 RVWREARDLV-YNVINCDKPIVSAIHGPAVGAGLVAALLADISIAAKDARIIDGHTRLGVAAGDHAAIVWPLLCGMAKAK 168 (268)
T ss_pred HHHHHHHHHH-HHHHcCCCCEEEEEcCeeeehhhHHHHhCCEEEecCCCEEeCcccccCCCCCcchhhHHHHHhCHHHHH
Confidence 1112223455 668899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCCCCHHHHHHcCCcceecCchHHHHHHHHHHHHHHhcChhhhhhhhccCCCCChHHHHHHHHHHHHHHHHhCCC
Q 007805 161 EMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPN 240 (589)
Q Consensus 161 ~l~ltg~~~~a~~A~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (589)
++++||++++|+||+++||||+|||++++++++.++|++|++.||.+++
T Consensus 169 ~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~a~~------------------------------- 217 (268)
T PRK07327 169 YYLLLCEPVSGEEAERIGLVSLAVDDDELLPKALEVAERLAAGSQTAIR------------------------------- 217 (268)
T ss_pred HHHHcCCccCHHHHHHcCCcceecCHHHHHHHHHHHHHHHHcCCHHHHH-------------------------------
Confidence 9999999999999999999999999999999999999999999986554
Q ss_pred ChhHHHHHHHHHHhh---cCCHHHHHHHHHHHHHHHhCCHHHHhHHHHHHHhhhccC
Q 007805 241 MPQHQACLDVIEEGI---VHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSK 294 (589)
Q Consensus 241 ~~a~~~~~~~~~~~~---~~~~~~~l~~E~~~~~~~~~s~~~~~~i~af~~~r~~~~ 294 (589)
.+|++++... ...++..+..| ..++.++|+++++.+|++||+|++
T Consensus 218 -----~~K~~l~~~~~~~~~~~~~~~~~~----~~~~~~~d~~eg~~af~ekr~p~~ 265 (268)
T PRK07327 218 -----WTKYALNNWLRMAGPTFDTSLALE----FMGFSGPDVREGLASLREKRAPDF 265 (268)
T ss_pred -----HHHHHHHHhhhhhhhhHHHHHHHH----HHHccChhHHHHHHHHHhcCCCCC
Confidence 2344554321 11344444444 347889999999999999998875
No 67
>PRK06190 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=5.2e-48 Score=384.22 Aligned_cols=252 Identities=28% Similarity=0.403 Sum_probs=225.8
Q ss_pred CCCCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCCcCCCCchhhhhccCCCcc
Q 007805 1 MAAPRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDV 79 (589)
Q Consensus 1 M~~~~~~~~~~~~~v~~i~l~~p~-~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~ 79 (589)
|+++.+.+++ +++|++|+||||+ .|++|.+|+++|.+++++++.|+++|+|||||.|++||+|+|++++....... .
T Consensus 1 ~~~~~v~~~~-~~~va~Itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vVltg~g~~FcaG~Dl~~~~~~~~~~-~ 78 (258)
T PRK06190 1 MTEPILLVET-HDRVRTLTLNRPEARNALSAALRRALFAALAEADADDDVDVVVLTGADPAFCAGLDLKELGGDGSAY-G 78 (258)
T ss_pred CCCceEEEEe-eCCEEEEEEcCCcccCCCCHHHHHHHHHHHHHHhhCCCceEEEEECCCCCccCCcCHHHHhcccchh-h
Confidence 8999999999 8999999999996 79999999999999999999999999999999999999999999875421111 1
Q ss_pred cccchhHHHHHHHHHHhCCCcEEEEeCCcccchhhHHhhhcCEEEEeCCceEeccccccCCCCChhhhhhHhhhcCHHHH
Q 007805 80 SLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKA 159 (589)
Q Consensus 80 ~~~~~~~~~~~~~~l~~~~kp~iaav~G~a~GgG~~lala~D~~ia~~~a~~~~pe~~~Gl~p~~g~~~~l~~~~G~~~a 159 (589)
. .....+++ ..+.++|||+||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|++++|..+|
T Consensus 79 -~-~~~~~~~~-~~i~~~~kPvIAaV~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~a 155 (258)
T PRK06190 79 -A-QDALPNPS-PAWPAMRKPVIGAINGAAVTGGLELALACDILIASERARFADTHARVGILPGWGLSVRLPQKVGIGRA 155 (258)
T ss_pred -H-HHHHHHHH-HHHHhCCCCEEEEECCEeecHHHHHHHhCCEEEEeCCCEEECcccccCcCCCccHHHHHHHHhCHHHH
Confidence 1 12234555 67999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCCCCHHHHHHcCCcceecCchHHHHHHHHHHHHHHhcChhhhhhhhccCCCCChHHHHHHHHHHHHHHHHhCC
Q 007805 160 IEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAP 239 (589)
Q Consensus 160 ~~l~ltg~~~~a~~A~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (589)
++|++||++++|+||+++||||++||++++++++.+++++|++.||.+++
T Consensus 156 ~~l~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~------------------------------ 205 (258)
T PRK06190 156 RRMSLTGDFLDAADALRAGLVTEVVPHDELLPRARRLAASIAGNNPAAVR------------------------------ 205 (258)
T ss_pred HHHHHhCCccCHHHHHHcCCCeEecCHhHHHHHHHHHHHHHHcCCHHHHH------------------------------
Confidence 99999999999999999999999999999999999999999999987654
Q ss_pred CChhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCC---HHHHhHHHHHHHhhhcc
Q 007805 240 NMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVML---DTSRGLVHVFFAQRATS 293 (589)
Q Consensus 240 ~~~a~~~~~~~~~~~~~~~~~~~l~~E~~~~~~~~~s---~~~~~~i~af~~~r~~~ 293 (589)
.+|++++.....+++++++.|...+..++.| +..++...+|.++-+++
T Consensus 206 ------~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~ 256 (258)
T PRK06190 206 ------ALKASYDDGAAAQTGDALALEAEAARAHNRSVSPDGIAARREAVMARGRAQ 256 (258)
T ss_pred ------HHHHHHHHhhcCCHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhhhhc
Confidence 4577888877888999999999999999999 77777778888775543
No 68
>PRK05864 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=3.1e-48 Score=390.83 Aligned_cols=254 Identities=25% Similarity=0.343 Sum_probs=215.9
Q ss_pred CcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCCcCCCCchhhhhccCCC---cc
Q 007805 4 PRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAG---DV 79 (589)
Q Consensus 4 ~~~~~~~~~~~v~~i~l~~p~-~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~---~~ 79 (589)
+.+.++..+++|++|+||||+ .|++|.+|+++|.+++++++.|+++|+|||||.|++||+|+|++++....... ..
T Consensus 9 ~~v~~~~~~~~v~~itlnrp~~~Nal~~~~~~~L~~~l~~~~~d~~vrvvVl~g~g~~FcaG~Dl~~~~~~~~~~~~~~~ 88 (276)
T PRK05864 9 SLVLVDHPRPEIALITLNRPERMNSMAFDVMVPLKEALAEVSYDNSVRVVVLTGAGRGFSSGADHKSAGVVPHVEGLTRP 88 (276)
T ss_pred CceEEeeecCCEEEEEecCCccccCCCHHHHHHHHHHHHHHhcCCCceEEEEECCCCCeecCcchhhhhcccccccccch
Confidence 457777546789999999996 69999999999999999999999999999999999999999999874321100 00
Q ss_pred c---ccchhHHHHHHHHHHhCCCcEEEEeCCcccchhhHHhhhcCEEEEeCCceEeccccccCCCC-ChhhhhhHhhhcC
Q 007805 80 S---LMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIP-GFGGTQRLPRLVG 155 (589)
Q Consensus 80 ~---~~~~~~~~~~~~~l~~~~kp~iaav~G~a~GgG~~lala~D~~ia~~~a~~~~pe~~~Gl~p-~~g~~~~l~~~~G 155 (589)
. .......+++ ..+.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++| ++|++++|++++|
T Consensus 89 ~~~~~~~~~~~~~~-~~l~~~~kPvIaav~G~a~GgG~~LalacD~ria~~~a~f~~pe~~~Gl~p~~~g~~~~l~~~vG 167 (276)
T PRK05864 89 TYALRSMELLDDVI-LALRRLHQPVIAAVNGPAIGGGLCLALAADIRVASSSAYFRAAGINNGLTASELGLSYLLPRAIG 167 (276)
T ss_pred hHHHHHHHHHHHHH-HHHHhCCCCEEEEECCEeehhHHHHHHhCCEEEeeCCCEecCcccccCCCCCCcchheehHhhhC
Confidence 0 1111223445 668899999999999999999999999999999999999999999999997 7899999999999
Q ss_pred HHHHHHHHHcCCCCCHHHHHHcCCcceecCchHHHHHHHHHHHHHHhcChhhhhhhhccCCCCChHHHHHHHHHHHHHHH
Q 007805 156 LSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAK 235 (589)
Q Consensus 156 ~~~a~~l~ltg~~~~a~~A~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (589)
..+|++|+++|++++|+||+++||||+|||++++++++.++|++|++.||.+++
T Consensus 168 ~~~A~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~p~a~~-------------------------- 221 (276)
T PRK05864 168 SSRAFEIMLTGRDVDAEEAERIGLVSRQVPDEQLLDTCYAIAARMAGFSRPGIE-------------------------- 221 (276)
T ss_pred HHHHHHHHHcCCccCHHHHHHcCCcceeeCHHHHHHHHHHHHHHHHhCCHHHHH--------------------------
Confidence 999999999999999999999999999999999999999999999999986543
Q ss_pred HhCCCChhHHHHHHHHHHhhcC-CHHHHHHHHHHHHH-HHhCCHHHHhHHHHHHHhhhccC
Q 007805 236 KTAPNMPQHQACLDVIEEGIVH-GGYSGVLKEAKVFK-ELVMLDTSRGLVHVFFAQRATSK 294 (589)
Q Consensus 236 ~~~~~~~a~~~~~~~~~~~~~~-~~~~~l~~E~~~~~-~~~~s~~~~~~i~af~~~r~~~~ 294 (589)
.+|++++..... ++++++..|...+. ..+.|+|+++++.+|++||+|++
T Consensus 222 ----------~~K~~l~~~~~~~~~~~~~~~e~~~~~~~~~~~~d~~e~~~af~~kr~p~~ 272 (276)
T PRK05864 222 ----------LTKRTLWSGLDAASLEAHMQAEGLGQLFVRLLTANFEEAVAARAEKRPPVF 272 (276)
T ss_pred ----------HHHHHHHhhcccCCHHHHHHHHHHHHHHHhccChhHHHHHHHHhccCCCCC
Confidence 345666665554 67888877765332 35789999999999999998875
No 69
>PRK05870 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=1.9e-48 Score=386.76 Aligned_cols=247 Identities=27% Similarity=0.311 Sum_probs=219.6
Q ss_pred CCCCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCCcCCCCchhhhhccCCCcc
Q 007805 1 MAAPRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDV 79 (589)
Q Consensus 1 M~~~~~~~~~~~~~v~~i~l~~p~-~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~ 79 (589)
|+ +.+.+++ +++|++|+||||+ .|++|.+|+++|.++++.+++|+++|+|||||.|++||+|+|++++....... .
T Consensus 1 m~-~~i~~~~-~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vvl~g~g~~F~aG~Dl~~~~~~~~~~-~ 77 (249)
T PRK05870 1 MM-DPVLLDV-DDGVALITVNDPDRRNAVTAEMSAQLRAAVAAAEADPDVHALVVTGAGKAFCAGADLTALGAAPGRP-A 77 (249)
T ss_pred CC-ccEEEEc-cCCEEEEEEcCCCccCCCCHHHHHHHHHHHHHHhcCCCeeEEEEECCCCCeecCcChHHHhcccccc-h
Confidence 54 4688888 8899999999996 79999999999999999999999999999999999999999999886432211 1
Q ss_pred cccchhHHHHHHHHHHhCCCcEEEEeCCcccchhhHHhhhcCEEEEeCCceEeccccccCCCCChhhhhhHhhhcCHHHH
Q 007805 80 SLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKA 159 (589)
Q Consensus 80 ~~~~~~~~~~~~~~l~~~~kp~iaav~G~a~GgG~~lala~D~~ia~~~a~~~~pe~~~Gl~p~~g~~~~l~~~~G~~~a 159 (589)
........+.+ ..+.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|..++
T Consensus 78 ~~~~~~~~~~~-~~l~~~~kPvIaav~G~a~GgG~~lal~cD~ria~~~a~f~~pe~~~G~~p~~g~~~~l~~~~G~~~a 156 (249)
T PRK05870 78 EDGLRRIYDGF-LAVASCPLPTIAAVNGAAVGAGLNLALAADVRIAGPKALFDARFQKLGLHPGGGATWMLQRAVGPQVA 156 (249)
T ss_pred HHHHHHHHHHH-HHHHhCCCCEEEEECCEeEchhHHHHHhCCEEEEcCCCEEeCcccccCcCCCCcceeeHHhhhCHHHH
Confidence 11122233445 56889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCCCCHHHHHHcCCcceecCchHHHHHHHHHHHHHHhcChhhhhhhhccCCCCChHHHHHHHHHHHHHHHHhCC
Q 007805 160 IEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAP 239 (589)
Q Consensus 160 ~~l~ltg~~~~a~~A~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (589)
+++++||++++|+||+++||||++| +++.+++.++|+++++.||.+++
T Consensus 157 ~~l~ltg~~~~a~eA~~~Glv~~vv--~~l~~~a~~~a~~la~~~~~a~~------------------------------ 204 (249)
T PRK05870 157 RAALLFGMRFDAEAAVRHGLALMVA--DDPVAAALELAAGPAAAPRELVL------------------------------ 204 (249)
T ss_pred HHHHHhCCccCHHHHHHcCCHHHHH--hhHHHHHHHHHHHHHhCCHHHHH------------------------------
Confidence 9999999999999999999999999 68999999999999999986554
Q ss_pred CChhHHHHHHHHHHhhc-CCHHHHHHHHHHHHHHHhCCHHHHhHHHHHHHh
Q 007805 240 NMPQHQACLDVIEEGIV-HGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQ 289 (589)
Q Consensus 240 ~~~a~~~~~~~~~~~~~-~~~~~~l~~E~~~~~~~~~s~~~~~~i~af~~~ 289 (589)
.+|+.++.... .+++++++.|.+.+..++.|+|+++++++|+++
T Consensus 205 ------~~K~~~~~~~~~~~l~~~~~~e~~~~~~~~~~~d~~eg~~af~~~ 249 (249)
T PRK05870 205 ------ATKASMRATASLAQHAAAVEFELGPQAASVQSPEFAARLAAAQRR 249 (249)
T ss_pred ------HHHHHHHhccccCCHHHHHHHHHHHHHHHhcChhHHHHHHHHhcC
Confidence 45677877776 789999999999999999999999999999975
No 70
>TIGR03189 dienoyl_CoA_hyt cyclohexa-1,5-dienecarbonyl-CoA hydratase. This enzyme, cyclohexa-1,5-dienecarbonyl-CoA hydratase, also called dienoyl-CoA hydratase, acts on the product of benzoyl-CoA reductase (EC 1.3.99.15). Benzoyl-CoA is a common intermediate in the degradation of many aromatic compounds, and this enzyme is part of an anaerobic pathway for dearomatization and degradation.
Probab=100.00 E-value=5.2e-48 Score=383.30 Aligned_cols=244 Identities=26% Similarity=0.366 Sum_probs=211.1
Q ss_pred EEEEEecCcEEEEEeCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCCcCCCCchhhhhccCCCcccccchh
Q 007805 6 VTMEVGNDGVAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDV 85 (589)
Q Consensus 6 ~~~~~~~~~v~~i~l~~p~~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~ 85 (589)
+.+++ +++|++||||||+.|++|.+|+.+|.++++.++.|+++|+|||||.|++||+|.|++++... . ...+...
T Consensus 3 v~~~~-~~~v~~itlnrp~~Nal~~~~~~~l~~~l~~~~~~~~vr~vVl~g~g~~FcaG~Dl~~~~~~---~-~~~~~~~ 77 (251)
T TIGR03189 3 VWLER-DGKLLRLRLARPKANIVDAAMIAALSAALGEHLEDSALRAVLLDAEGPHFSFGASVAEHMPD---Q-CAAMLAS 77 (251)
T ss_pred EEEEe-eCCEEEEEeCCCCcCCCCHHHHHHHHHHHHHHHcCCCceEEEEECCCCceecCcChhhhCch---h-HHHHHHH
Confidence 67788 78999999999988999999999999999999999999999999999999999999975321 1 1111222
Q ss_pred HHHHHHHHHHhCCCcEEEEeCCcccchhhHHhhhcCEEEEeCCceEeccccccCCCCChhhhhhHhhhcCHHHHHHHHHc
Q 007805 86 SVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLL 165 (589)
Q Consensus 86 ~~~~~~~~l~~~~kp~iaav~G~a~GgG~~lala~D~~ia~~~a~~~~pe~~~Gl~p~~g~~~~l~~~~G~~~a~~l~lt 165 (589)
..+++ .++.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|+ +++++|++++|..+|++|++|
T Consensus 78 ~~~~~-~~l~~~~kPvIaav~G~a~GgG~~lal~cD~~ia~~~a~f~~pe~~~Gl~p~-~~~~~l~~~vg~~~a~~l~lt 155 (251)
T TIGR03189 78 LHKLV-IAMLDSPVPILVAVRGQCLGGGLEVAAAGNLMFAAPDAKLGQPEIVLGVFAP-AASCLLPERMGRVAAEDLLYS 155 (251)
T ss_pred HHHHH-HHHHhCCCCEEEEecCeeeeHHHHHHHhCCEEEEcCCCEEeCchhhcCCCCC-chHHHHHHHhCHHHHHHHHHc
Confidence 33455 6789999999999999999999999999999999999999999999999997 467899999999999999999
Q ss_pred CCCCCHHHHHHcCCcceecCchHHHHHHHHH-HHHHHhcChhhhhhhhccCCCCChHHHHHHHHHHHHHHHHhCCCChhH
Q 007805 166 SKSITSEEGWKLGLIDAVVTSEELLKVSRLW-ALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPNMPQH 244 (589)
Q Consensus 166 g~~~~a~~A~~~Glv~~vv~~~~l~~~a~~~-a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 244 (589)
|++++|+||+++||||+|+|+.+ +++.++ ++++++.||.+++
T Consensus 156 g~~~~a~eA~~~Glv~~v~~~~~--~~a~~~~a~~la~~~p~a~~----------------------------------- 198 (251)
T TIGR03189 156 GRSIDGAEGARIGLANAVAEDPE--NAALAWFDEHPAKLSASSLR----------------------------------- 198 (251)
T ss_pred CCCCCHHHHHHCCCcceecCcHH--HHHHHHHHHHHHhCCHHHHH-----------------------------------
Confidence 99999999999999999998654 456665 6899999886543
Q ss_pred HHHHHHHHHhhcCCHHHHHH-HHHHHHHHHhCCHHHHhHHHHHHHhhhccC
Q 007805 245 QACLDVIEEGIVHGGYSGVL-KEAKVFKELVMLDTSRGLVHVFFAQRATSK 294 (589)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~l~-~E~~~~~~~~~s~~~~~~i~af~~~r~~~~ 294 (589)
.+|++++.....++++++. .|...+..++.|+|+++++++|++||++++
T Consensus 199 -~~K~~l~~~~~~~~~~~~~~~e~~~~~~~~~s~d~~eg~~af~ekr~p~~ 248 (251)
T TIGR03189 199 -FAVRAARLGMNERVKAKIAEVEALYLEELMATHDAVEGLNAFLEKRPALW 248 (251)
T ss_pred -HHHHHHHhhhcccHHHHHHHHHHHHHHHHhCCHhHHHHHHHHHhcCCCCC
Confidence 3466777776777777764 788889999999999999999999999875
No 71
>PRK12478 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=9e-48 Score=390.17 Aligned_cols=253 Identities=22% Similarity=0.213 Sum_probs=215.7
Q ss_pred CCCCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCCcCCCCchh-hhh---c-c
Q 007805 1 MAAPRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINV-FQK---V-H 74 (589)
Q Consensus 1 M~~~~~~~~~~~~~v~~i~l~~p~-~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F~aG~Dl~~-~~~---~-~ 74 (589)
|+++.+.++. +++|++|+||||+ +|+||.+|+++|.+++++++.|+++|+|||||.|++||+|+|+++ +.. . .
T Consensus 2 ~~~~~v~~~~-~~~Va~ItLnrP~~~NAl~~~~~~eL~~al~~~~~d~~vrvvVLtG~G~~FcaG~Dl~~~~~~~~~~~~ 80 (298)
T PRK12478 2 PDFQTLLYTT-AGPVATITLNRPEQLNTIVPPMPDEIEAAIGLAERDQDIKVIVLRGAGRAFSGGYDFGGGFQHWGEAMM 80 (298)
T ss_pred CCceEEEEec-cCCEEEEEecCCcccCCCCHHHHHHHHHHHHHHhcCCCceEEEEECCCCCcccCcCccccccccchhcc
Confidence 7788899998 8899999999996 699999999999999999999999999999999999999999986 211 0 0
Q ss_pred CCC---ccccc---c-h--hHHHHHHHHHHhCCCcEEEEeCCcccchhhHHhhhcCEEEEeCCceEecccccc-CCCCCh
Q 007805 75 GAG---DVSLM---P-D--VSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTL-GVIPGF 144 (589)
Q Consensus 75 ~~~---~~~~~---~-~--~~~~~~~~~l~~~~kp~iaav~G~a~GgG~~lala~D~~ia~~~a~~~~pe~~~-Gl~p~~ 144 (589)
... ....+ . . ..+..+ ..+.++||||||+|||+|+|||++|+++||+|||+++++|++||+++ |++|
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~kPvIAaV~G~a~GgG~~LalacD~ria~~~A~f~~pe~~l~G~~~-- 157 (298)
T PRK12478 81 TDGRWDPGKDFAMVTARETGPTQKF-MAIWRASKPVIAQVHGWCVGGASDYALCADIVIASDDAVIGTPYSRMWGAYL-- 157 (298)
T ss_pred cccccCchhhhhhhhhhhcchHHHH-HHHHhCCCCEEEEEccEEehhHHHHHHHCCEEEEcCCcEEeccccccccCCc--
Confidence 000 00111 0 0 011234 45889999999999999999999999999999999999999999997 9875
Q ss_pred hhhhhHhhhcCHHHHHHHHHcCCCCCHHHHHHcCCcceecCchHHHHHHHHHHHHHHhcChhhhhhhhccCCCCChHHHH
Q 007805 145 GGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAR 224 (589)
Q Consensus 145 g~~~~l~~~~G~~~a~~l~ltg~~~~a~~A~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~ 224 (589)
++++ .+++|..+|++|++||++++|+||+++||||+|||++++++++.++|++|++.||.+++
T Consensus 158 ~~~~--~~~vG~~~A~~llltg~~i~A~eA~~~GLV~~vv~~~~l~~~a~~~a~~la~~~p~a~~--------------- 220 (298)
T PRK12478 158 TGMW--LYRLSLAKVKWHSLTGRPLTGVQAAEAELINEAVPFERLEARVAEVATELARIPLSQLQ--------------- 220 (298)
T ss_pred hhHH--HHHhhHHHHHHHHHcCCccCHHHHHHcCCcceecCHHHHHHHHHHHHHHHHhCCHHHHH---------------
Confidence 3333 35699999999999999999999999999999999999999999999999999887554
Q ss_pred HHHHHHHHHHHHhCCCChhHHHHHHHHHHhhc-CCHHHHHHHHHHHHHHHhCCHHHH--------hHHHHHHHhhhccCC
Q 007805 225 EVLKLARLQAKKTAPNMPQHQACLDVIEEGIV-HGGYSGVLKEAKVFKELVMLDTSR--------GLVHVFFAQRATSKV 295 (589)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~l~~E~~~~~~~~~s~~~~--------~~i~af~~~r~~~~~ 295 (589)
.+|++++.... .+++++++.|...+..++.|+|++ |++.+|++||+|++.
T Consensus 221 ---------------------~~K~~l~~~~~~~~l~~~~~~e~~~~~~~~~s~d~~e~~~~~~~egv~Af~ekR~p~f~ 279 (298)
T PRK12478 221 ---------------------AQKLIVNQAYENMGLASTQTLGGILDGLMRNTPDALEFIRTAETQGVRAAVERRDGPFG 279 (298)
T ss_pred ---------------------HHHHHHHHHHHhcchhHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHhcCCccc
Confidence 45677777666 468999999999999999999997 599999999998864
No 72
>PLN02921 naphthoate synthase
Probab=100.00 E-value=1e-47 Score=392.30 Aligned_cols=254 Identities=27% Similarity=0.309 Sum_probs=216.1
Q ss_pred CCcEEEEEe-cCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCC-CCCcCCCCchhhhhccCCCcc
Q 007805 3 APRVTMEVG-NDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNG-GRFSGGFDINVFQKVHGAGDV 79 (589)
Q Consensus 3 ~~~~~~~~~-~~~v~~i~l~~p~-~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g-~~F~aG~Dl~~~~~~~~~~~~ 79 (589)
|+.+.++++ +++|++|+||||+ .|+||.+|+.+|.++++.++.|+++|+|||||.| ++||+|+|++++....... .
T Consensus 64 ~~~i~~~~~~~~~Va~ItLnrP~~~Nal~~~~~~eL~~al~~~~~d~~vrvVVLtg~G~k~FcaG~Dl~~~~~~~~~~-~ 142 (327)
T PLN02921 64 FTDIIYEKAVGEGIAKITINRPERRNAFRPRTVKELQRAFNDARDDSSVGVIILTGKGTKAFCSGGDQAVRGKDGYVG-P 142 (327)
T ss_pred CceEEEEEecCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHhhCCCceEEEEecCCCCceecCcChhhhhcccccc-h
Confidence 456888874 4889999999996 6999999999999999999999999999999999 7999999999874321110 0
Q ss_pred cccch-hHHHHHHHHHHhCCCcEEEEeCCcccchhhHHhhhcCEEEEeCCceEeccccccCCCCChhhhhhHhhhcCHHH
Q 007805 80 SLMPD-VSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSK 158 (589)
Q Consensus 80 ~~~~~-~~~~~~~~~l~~~~kp~iaav~G~a~GgG~~lala~D~~ia~~~a~~~~pe~~~Gl~p~~g~~~~l~~~~G~~~ 158 (589)
..... ...+++ ..+.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|++++|..+
T Consensus 143 ~~~~~~~~~~l~-~~l~~~~kPvIAaVnG~a~GGG~~LalacD~riA~~~A~f~~pe~~~Gl~p~~gg~~~L~rliG~~~ 221 (327)
T PLN02921 143 DDAGRLNVLDLQ-IQIRRLPKPVIAMVAGYAVGGGHILHMVCDLTIAADNAVFGQTGPKVGSFDAGYGSSIMARLVGQKK 221 (327)
T ss_pred hHHHHHHHHHHH-HHHHhCCCCEEEEECCEEecHHHHHHHhCCEEEEeCCCEEeCcccccCCCCCccHHHHHHHHhCHHH
Confidence 01111 112344 6788999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCCCCHHHHHHcCCcceecCchHHHHHHHHHHHHHHhcChhhhhhhhccCCCCChHHHHHHHHHHHHHHHHhC
Q 007805 159 AIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTA 238 (589)
Q Consensus 159 a~~l~ltg~~~~a~~A~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (589)
|++|+++|++++|+||+++||||+|||++++++++.++|++|++.||.+++
T Consensus 222 A~ellltG~~~~A~eA~~~GLV~~vv~~~~l~~~a~~~a~~la~~~p~al~----------------------------- 272 (327)
T PLN02921 222 AREMWFLARFYTASEALKMGLVNTVVPLDELEGETVKWCREILRNSPTAIR----------------------------- 272 (327)
T ss_pred HHHHHHcCCcCCHHHHHHCCCceEEeCHHHHHHHHHHHHHHHHccCHHHHH-----------------------------
Confidence 999999999999999999999999999999999999999999999987654
Q ss_pred CCChhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHhHHHHHHHhhhccCC
Q 007805 239 PNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKV 295 (589)
Q Consensus 239 ~~~~a~~~~~~~~~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~af~~~r~~~~~ 295 (589)
.+|++++..... .....+.|...+..++.++|++|++.+|++||+|++.
T Consensus 273 -------~~K~~l~~~~~~-~~~~~~~~~~~~~~~~~s~d~~egi~Af~ekr~p~f~ 321 (327)
T PLN02921 273 -------VLKSALNAADDG-HAGLQELGGNATLLFYGSEEGNEGRTAYLEGRAPDFS 321 (327)
T ss_pred -------HHHHHHHHhhcc-hhHHHHHHHHHHHHHhcCHHHHHHHHHHhccCCCCCC
Confidence 345566654432 3333344568889999999999999999999998853
No 73
>PRK07509 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=1.1e-47 Score=384.95 Aligned_cols=251 Identities=27% Similarity=0.427 Sum_probs=220.9
Q ss_pred CCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCCcCCCCchhhhhccCCCcccc
Q 007805 3 APRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSL 81 (589)
Q Consensus 3 ~~~~~~~~~~~~v~~i~l~~p~-~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~ 81 (589)
++.+.+++ +++|++|+||||+ .|++|.+|+++|.++++.++.|+++|+|||||.|++||+|+|++++....... ...
T Consensus 2 ~~~v~~~~-~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~vr~vvl~g~g~~F~aG~Dl~~~~~~~~~~-~~~ 79 (262)
T PRK07509 2 MDRVSVTI-EDGIADVRLNRPDKMNALDFAMFEELIATIKRLKKDRGIRAVILSGEGGAFCAGLDVKSVASSPGNA-VKL 79 (262)
T ss_pred CceEEEEe-eCCEEEEEecCcccccCCCHHHHHHHHHHHHHHhhCCCCeEEEEECCCCCcCCCcCHHHHhcccchh-hhh
Confidence 46799999 8999999999995 79999999999999999999999999999999999999999999876422111 111
Q ss_pred cc-------hhHHHHHHHHHHhCCCcEEEEeCCcccchhhHHhhhcCEEEEeCCceEeccccccCCCCChhhhhhHhhhc
Q 007805 82 MP-------DVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLV 154 (589)
Q Consensus 82 ~~-------~~~~~~~~~~l~~~~kp~iaav~G~a~GgG~~lala~D~~ia~~~a~~~~pe~~~Gl~p~~g~~~~l~~~~ 154 (589)
.. ....+++ ..+.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|++++
T Consensus 80 ~~~~~~~~~~~~~~~~-~~~~~~~kpvIaav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~~ 158 (262)
T PRK07509 80 LFKRLPGNANLAQRVS-LGWRRLPVPVIAALEGVCFGGGLQIALGADIRIAAPDTKLSIMEAKWGLVPDMAGTVSLRGLV 158 (262)
T ss_pred HhhhhHHHHHHHHHHH-HHHHhCCCCEEEEECCeeecchHHHHHhCCEEEecCCCEeecchhccCCCCCchHHHHHHHHh
Confidence 11 1122333 567899999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHcCCCCCHHHHHHcCCcceecCchHHHHHHHHHHHHHHhcChhhhhhhhccCCCCChHHHHHHHHHHHHHH
Q 007805 155 GLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQA 234 (589)
Q Consensus 155 G~~~a~~l~ltg~~~~a~~A~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (589)
|..+++++++||++++|+||+++||||++|++ +.+++.++++++++.||.+++
T Consensus 159 g~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~--~~~~a~~~a~~l~~~~~~~~~------------------------- 211 (262)
T PRK07509 159 RKDVARELTYTARVFSAEEALELGLVTHVSDD--PLAAALALAREIAQRSPDAIA------------------------- 211 (262)
T ss_pred CHHHHHHHHHcCCCcCHHHHHHcCChhhhhch--HHHHHHHHHHHHHhCCHHHHH-------------------------
Confidence 99999999999999999999999999999954 678999999999999876543
Q ss_pred HHhCCCChhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHhHHHHHHHhhhccC
Q 007805 235 KKTAPNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSK 294 (589)
Q Consensus 235 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~af~~~r~~~~ 294 (589)
.+|+.++.....++.+++..|.+.+..++.++|+++++.+|++||+|++
T Consensus 212 -----------~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~d~~e~~~af~ekr~p~~ 260 (262)
T PRK07509 212 -----------AAKRLINRSWTASVRALLARESVEQIRLLLGKNQKIAVKAQMKKRAPKF 260 (262)
T ss_pred -----------HHHHHHHHHhcCCHHHHHHHHHHHHHHHhcChhHHHHHHHHhcCCCCCC
Confidence 4467777777778899999999999999999999999999999998764
No 74
>COG1024 CaiD Enoyl-CoA hydratase/carnithine racemase [Lipid metabolism]
Probab=100.00 E-value=1.4e-47 Score=382.74 Aligned_cols=252 Identities=37% Similarity=0.577 Sum_probs=218.9
Q ss_pred CCCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCCcCCCCchhhhhccCCCccc
Q 007805 2 AAPRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVS 80 (589)
Q Consensus 2 ~~~~~~~~~~~~~v~~i~l~~p~-~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~ 80 (589)
.++.+.++. +++|++|+||||+ .|++|.+|+.+|.++++.++.|+++|+|||||.|++||+|+|++++..........
T Consensus 3 ~~~~~~~~~-~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~vr~vvltg~g~~FsaG~Dl~~~~~~~~~~~~~ 81 (257)
T COG1024 3 TYETILVER-EDGIAVITLNRPEKLNALNLEMLDELAEALDEAEADPDVRVVVLTGAGKAFSAGADLKELLSPEDGNAAE 81 (257)
T ss_pred CCCeeEEEe-eCCEEEEEecCcccccCCCHHHHHHHHHHHHHHhhCCCeEEEEEECCCCceecccCHHHHhcccchhHHH
Confidence 456788888 6779999999996 69999999999999999999999999999999999999999999987511111111
Q ss_pred ccchhHHHHHHHHHHhCCCcEEEEeCCcccchhhHHhhhcCEEEEeCCceEeccccccCCCCChhhhhhHhhhcCHHHHH
Q 007805 81 LMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAI 160 (589)
Q Consensus 81 ~~~~~~~~~~~~~l~~~~kp~iaav~G~a~GgG~~lala~D~~ia~~~a~~~~pe~~~Gl~p~~g~~~~l~~~~G~~~a~ 160 (589)
.+....+.++ ..+.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|+|++|..+|+
T Consensus 82 ~~~~~~~~~~-~~l~~~~kPvIAav~G~a~GgG~eLal~~D~ria~~~a~f~~pe~~iGl~Pg~g~~~~l~r~~G~~~a~ 160 (257)
T COG1024 82 NLMQPGQDLL-RALADLPKPVIAAVNGYALGGGLELALACDIRIAAEDAKFGLPEVNLGLLPGDGGTQRLPRLLGRGRAK 160 (257)
T ss_pred HHHhHHHHHH-HHHHhCCCCEEEEEcceEeechhhhhhcCCeEEecCCcEecCcccccccCCCCcHHHHHHHhcCHHHHH
Confidence 2222333456 679999999999999999999999999999999999999999999999999889999999999999999
Q ss_pred HHHHcCCCCCHHHHHHcCCcceecCc-hHHHHHHHHHHHHHHhcChhhhhhhhccCCCCChHHHHHHHHHHHHHHHHhCC
Q 007805 161 EMMLLSKSITSEEGWKLGLIDAVVTS-EELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAP 239 (589)
Q Consensus 161 ~l~ltg~~~~a~~A~~~Glv~~vv~~-~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (589)
+|++||+.++++||+++||||++|++ +++++.+.++++++++ +|.+++
T Consensus 161 ~l~ltg~~~~a~eA~~~Glv~~vv~~~~~l~~~a~~~a~~~a~-~~~a~~------------------------------ 209 (257)
T COG1024 161 ELLLTGEPISAAEALELGLVDEVVPDAEELLERALELARRLAA-PPLALA------------------------------ 209 (257)
T ss_pred HHHHcCCcCCHHHHHHcCCcCeeeCCHHHHHHHHHHHHHHHcc-CHHHHH------------------------------
Confidence 99999999999999999999999985 7999999999999998 544332
Q ss_pred CChhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHhHHHHHHHhhhcc
Q 007805 240 NMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATS 293 (589)
Q Consensus 240 ~~~a~~~~~~~~~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~af~~~r~~~ 293 (589)
.+|+.++.....++++.+..|...+...+.++|++|++++|++ |+|.
T Consensus 210 ------~~k~~~~~~~~~~l~~~~~~~~~~~~~~~~~~d~~eg~~a~~~-r~p~ 256 (257)
T COG1024 210 ------ATKRLVRAALEADLAEALEAEALAFARLFSSEDFREGVRAFLE-RKPV 256 (257)
T ss_pred ------HHHHHHHHhhhccHHHHHHHHHHHHHHHhcChhHHHHHHHHHc-cCCC
Confidence 4456677776666888999999999999999999999999999 6654
No 75
>PRK06072 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=3.3e-47 Score=377.43 Aligned_cols=243 Identities=19% Similarity=0.252 Sum_probs=215.5
Q ss_pred EEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCCcCCCCchhhhhccCCCcccccch
Q 007805 6 VTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPD 84 (589)
Q Consensus 6 ~~~~~~~~~v~~i~l~~p~-~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~ 84 (589)
+.++. +++|++|+||||+ .|++|.+|+++|.++++.++.|+++|+|||||.|++||+|.|++++.... ...+..
T Consensus 2 i~~~~-~~~v~~itlnrp~~~Nal~~~~~~~l~~a~~~~~~d~~vr~vVl~g~g~~F~aG~Dl~~~~~~~----~~~~~~ 76 (248)
T PRK06072 2 IKVES-REGYAIVTMSRPDKLNALNLEMRNEFISKLKQINADPKIRVVIVTGEGRAFCVGADLSEFAPDF----AIDLRE 76 (248)
T ss_pred eEEEE-ECCEEEEEECCcccccCCCHHHHHHHHHHHHHHhcCCCeeEEEEECCCCCcccCcCHHHHhhhh----HHHHHH
Confidence 56787 7899999999996 79999999999999999999999999999999999999999999875321 111222
Q ss_pred hHHHHHHHHHHhCCCcEEEEeCCcccchhhHHhhhcCEEEEeCCceEeccccccCCCCChhhhhhHhhhcCHHHHHHHHH
Q 007805 85 VSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMML 164 (589)
Q Consensus 85 ~~~~~~~~~l~~~~kp~iaav~G~a~GgG~~lala~D~~ia~~~a~~~~pe~~~Gl~p~~g~~~~l~~~~G~~~a~~l~l 164 (589)
....++ ..+.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|. +++++++
T Consensus 77 ~~~~~~-~~l~~~~kPvIaav~G~a~GgG~~lal~cD~~ia~~~a~f~~~~~~~Gl~p~~g~~~~l~~~~g~-~a~~lll 154 (248)
T PRK06072 77 TFYPII-REIRFSDKIYISAINGVTAGACIGIALSTDFKFASRDVKFVTAFQRLGLASDTGVAYFLLKLTGQ-RFYEILV 154 (248)
T ss_pred HHHHHH-HHHHhCCCCEEEEECCeeehHHHHHHHhCCEEEEcCCCEEecchhhcCcCCCchHHHHHHHHhhH-HHHHHHH
Confidence 233455 66899999999999999999999999999999999999999999999999999999999999996 8999999
Q ss_pred cCCCCCHHHHHHcCCcceecCchHHHHHHHHHHHHHHhcChhhhhhhhccCCCCChHHHHHHHHHHHHHHHHhCCCChhH
Q 007805 165 LSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPNMPQH 244 (589)
Q Consensus 165 tg~~~~a~~A~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 244 (589)
||++++|+||+++||||++ +++++++.++|+++++.||.+++
T Consensus 155 ~g~~~~a~eA~~~Glv~~~---~~~~~~a~~~a~~la~~~~~a~~----------------------------------- 196 (248)
T PRK06072 155 LGGEFTAEEAERWGLLKIS---EDPLSDAEEMANRISNGPFQSYI----------------------------------- 196 (248)
T ss_pred hCCccCHHHHHHCCCcccc---chHHHHHHHHHHHHHhCCHHHHH-----------------------------------
Confidence 9999999999999999963 35788999999999999876543
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHhHHHHHHHhhhccC
Q 007805 245 QACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSK 294 (589)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~af~~~r~~~~ 294 (589)
.+|++++.....++++.++.|.+.+..++.|+|+++++.+|++||+|++
T Consensus 197 -~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~~~d~~eg~~af~~kr~p~~ 245 (248)
T PRK06072 197 -AAKRMINLVLYNDLEEFLEYESAIQGYLGKTEDFKEGISSFKEKREPKF 245 (248)
T ss_pred -HHHHHHHHHhhcCHHHHHHHHHHHHHHHhCChhHHHHHHHHhcCCCCCC
Confidence 4467777776778899999999999999999999999999999998875
No 76
>PRK07112 polyketide biosynthesis enoyl-CoA hydratase; Validated
Probab=100.00 E-value=8e-47 Score=376.22 Aligned_cols=250 Identities=18% Similarity=0.211 Sum_probs=214.5
Q ss_pred CCCCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCCcCCCCchhhhhccCCCcc
Q 007805 1 MAAPRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDV 79 (589)
Q Consensus 1 M~~~~~~~~~~~~~v~~i~l~~p~-~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~ 79 (589)
|+|+++.+++ +++|++|+||||+ .|++|.+|+++|.++++.++ +++|+|||||.|++||+|+|++++.........
T Consensus 1 ~~~~~i~~~~-~~~i~~itlnrp~~~Nal~~~~~~~L~~~l~~~~--~~vr~vVl~g~g~~FsaG~Dl~~~~~~~~~~~~ 77 (255)
T PRK07112 1 MDYQTIRVRQ-QGDVCFLQLHRPEAQNTINDRLIAECMDVLDRCE--HAATIVVLEGLPEVFCFGADFSAIAEKPDAGRA 77 (255)
T ss_pred CCCceEEEEe-eCCEEEEEEcCCCccCCCCHHHHHHHHHHHHHhh--cCceEEEEEcCCCCcccCcCHHHHhhccccchh
Confidence 7889999999 8899999999996 69999999999999999998 469999999999999999999987542211111
Q ss_pred c-ccchhHHHHHHHHHHhCCCcEEEEeCCcccchhhHHhhhcCEEEEeCCceEeccccccCCCCChhhhhhHhhhcCHHH
Q 007805 80 S-LMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSK 158 (589)
Q Consensus 80 ~-~~~~~~~~~~~~~l~~~~kp~iaav~G~a~GgG~~lala~D~~ia~~~a~~~~pe~~~Gl~p~~g~~~~l~~~~G~~~ 158 (589)
. .......+++ +.+.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|+++ +.+|++++|..+
T Consensus 78 ~~~~~~~~~~~~-~~l~~~~kPvIaav~G~a~GgG~~lala~D~~ia~~~a~f~~pe~~~Gl~p~~~-~~~l~~~vg~~~ 155 (255)
T PRK07112 78 DLIDAEPLYDLW-HRLATGPYVTIAHVRGKVNAGGIGFVAASDIVIADETAPFSLSELLFGLIPACV-LPFLIRRIGTQK 155 (255)
T ss_pred hhhhHHHHHHHH-HHHHcCCCCEEEEEecEEEcchhHHHHcCCEEEEcCCCEEeCchhhhccCcchh-hHHHHHHhCHHH
Confidence 1 1112223455 678999999999999999999999999999999999999999999999999865 567999999999
Q ss_pred HHHHHHcCCCCCHHHHHHcCCcceecCchHHHHHHHHHHHHHHhcChhhhhhhhccCCCCChHHHHHHHHHHHHHHHHhC
Q 007805 159 AIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTA 238 (589)
Q Consensus 159 a~~l~ltg~~~~a~~A~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (589)
+++++++|++++|+||+++||||+|||+++. .+.++++++++.+|.+++
T Consensus 156 a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~~--~~~~~a~~l~~~~p~a~~----------------------------- 204 (255)
T PRK07112 156 AHYMTLMTQPVTAQQAFSWGLVDAYGANSDT--LLRKHLLRLRCLNKAAVA----------------------------- 204 (255)
T ss_pred HHHHHHhCCcccHHHHHHcCCCceecCcHHH--HHHHHHHHHHhCCHHHHH-----------------------------
Confidence 9999999999999999999999999987653 578899999999886544
Q ss_pred CCChhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHhHHHHHHHhhhccC
Q 007805 239 PNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSK 294 (589)
Q Consensus 239 ~~~~a~~~~~~~~~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~af~~~r~~~~ 294 (589)
.+|++++.. ...+.++++.|.+.+..++.|+|+++++.+|++||+|.+
T Consensus 205 -------~~K~~~~~~-~~~~~~~~~~e~~~~~~~~~~~~~~eg~~af~~kr~p~~ 252 (255)
T PRK07112 205 -------RYKSYASTL-DDTVAAARPAALAANIEMFADPENLRKIARYVETGKFPW 252 (255)
T ss_pred -------HHHHHHHHh-hhhHHHHHHHHHHHHHHHHcChHHHHHHHHHHcCCCCCC
Confidence 335555543 345788999999999999999999999999999998775
No 77
>PRK07110 polyketide biosynthesis enoyl-CoA hydratase; Validated
Probab=100.00 E-value=1.1e-46 Score=373.93 Aligned_cols=245 Identities=21% Similarity=0.284 Sum_probs=221.0
Q ss_pred CCCCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCCcCCCCchhhhhccCCCcc
Q 007805 1 MAAPRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDV 79 (589)
Q Consensus 1 M~~~~~~~~~~~~~v~~i~l~~p~-~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~ 79 (589)
|.|+.+.+++ +++|++|+||||+ .|++|.+|+++|.+++++++.|+++|+|||||.|++||+|.|++++.......
T Consensus 2 ~~~~~~~~~~-~~~v~~i~ln~p~~~Nal~~~~~~~L~~~l~~~~~d~~vr~vvl~g~g~~F~aG~Dl~~~~~~~~~~-- 78 (249)
T PRK07110 2 MMKVVELREV-EEGIAQVTMQDRVNKNAFSDELCDQLHEAFDTIAQDPRYKVVILTGYPNYFATGGTQEGLLSLQTGK-- 78 (249)
T ss_pred CCCceEEEEe-eCCEEEEEecCCCccCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCCeeCCcChHHHhhccchh--
Confidence 6678888998 8899999999996 69999999999999999999999999999999999999999999875432211
Q ss_pred cccchhHHHHHHHHHHhCCCcEEEEeCCcccchhhHHhhhcCEEEEeCCceEeccccccCCCCChhhhhhHhhhcCHHHH
Q 007805 80 SLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKA 159 (589)
Q Consensus 80 ~~~~~~~~~~~~~~l~~~~kp~iaav~G~a~GgG~~lala~D~~ia~~~a~~~~pe~~~Gl~p~~g~~~~l~~~~G~~~a 159 (589)
..+. . ..++ ..+.++|||+||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|..+|
T Consensus 79 ~~~~-~-~~~~-~~l~~~~kPvIaav~G~a~GgG~~lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~~g~~~a 155 (249)
T PRK07110 79 GTFT-E-ANLY-SLALNCPIPVIAAMQGHAIGGGLVLGLYADIVVLSRESVYTANFMKYGFTPGMGATAILPEKLGLALG 155 (249)
T ss_pred hhHh-h-HHHH-HHHHcCCCCEEEEecCceechHHHHHHhCCEEEEeCCCEecCchhccCCCCCchHHHHHHHHhCHHHH
Confidence 1111 1 3455 67899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCCCCHHHHHHcCCcceecCchHHHHHHHHHHHHHHhcChhhhhhhhccCCCCChHHHHHHHHHHHHHHHHhCC
Q 007805 160 IEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAP 239 (589)
Q Consensus 160 ~~l~ltg~~~~a~~A~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (589)
+++++||++++++||+++||||+|||++++.+++.++++++++.|+.+++
T Consensus 156 ~~llltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~a~~------------------------------ 205 (249)
T PRK07110 156 QEMLLTARYYRGAELKKRGVPFPVLPRAEVLEKALELARSLAEKPRHSLV------------------------------ 205 (249)
T ss_pred HHHHHcCCccCHHHHHHcCCCeEEeChHHHHHHHHHHHHHHHhCCHHHHH------------------------------
Confidence 99999999999999999999999999999999999999999999886544
Q ss_pred CChhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHhHHHHHH
Q 007805 240 NMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFF 287 (589)
Q Consensus 240 ~~~a~~~~~~~~~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~af~ 287 (589)
.+|+.++.....+++++++.|...+..++.++|++|++....
T Consensus 206 ------~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~~~~~~egi~~~~ 247 (249)
T PRK07110 206 ------LLKDHLVADRRRRLPEVIEQEVAMHEKTFHQPEVKRRIESLY 247 (249)
T ss_pred ------HHHHHHHHhhhccHHHHHHHHHHHHHHHhCCHhHHHHHHHhc
Confidence 457788888888999999999999999999999999998653
No 78
>PRK07854 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=6.4e-47 Score=373.96 Aligned_cols=238 Identities=25% Similarity=0.375 Sum_probs=209.6
Q ss_pred EEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCCcCCCCchhhhhccCCCcccccch
Q 007805 6 VTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPD 84 (589)
Q Consensus 6 ~~~~~~~~~v~~i~l~~p~-~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~ 84 (589)
+.+++ +++|++||||||+ .|++|.+|+.+|.+++++++.+ ++|+|||||.|++||+|+|+++... ...+..
T Consensus 2 ~~~~~-~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~~-~vr~vvl~g~g~~F~aG~Dl~~~~~------~~~~~~ 73 (243)
T PRK07854 2 IGVTR-DGQVLTIELQRPERRNALNAELCEELREAVRKAVDE-SARAIVLTGQGTVFCAGADLSGDVY------ADDFPD 73 (243)
T ss_pred ceEEE-eCCEEEEEeCCCccccCCCHHHHHHHHHHHHHHhcC-CceEEEEECCCCceecccCCccchh------HHHHHH
Confidence 56788 7899999999996 6999999999999999999865 8999999999999999999985211 111222
Q ss_pred hHHHHHHHHHHhCCCcEEEEeCCcccchhhHHhhhcCEEEEeCCceEeccccccCCCCChhhhhhHhhhcCHHHHHHHHH
Q 007805 85 VSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMML 164 (589)
Q Consensus 85 ~~~~~~~~~l~~~~kp~iaav~G~a~GgG~~lala~D~~ia~~~a~~~~pe~~~Gl~p~~g~~~~l~~~~G~~~a~~l~l 164 (589)
...+++ +.+.++|||+||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|++++|..+|++|++
T Consensus 74 ~~~~~~-~~l~~~~kP~Iaav~G~a~GgG~~lal~cD~~ia~~~a~f~~pe~~~G~~p~~g~~~~l~~~~G~~~a~~l~l 152 (243)
T PRK07854 74 ALIEML-HAIDAAPVPVIAAINGPAIGAGLQLAMACDLRVVAPEAYFQFPVAKYGIALDNWTIRRLSSLVGGGRARAMLL 152 (243)
T ss_pred HHHHHH-HHHHhCCCCEEEEecCcccccHHHHHHhCCEEEEcCCCEEeccccccccCCCccHHHHHHHHhCHHHHHHHHH
Confidence 234555 6789999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCHHHHHHcCCcceecCchHHHHHHHHHHHHHHhcChhhhhhhhccCCCCChHHHHHHHHHHHHHHHHhCCCChhH
Q 007805 165 LSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPNMPQH 244 (589)
Q Consensus 165 tg~~~~a~~A~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 244 (589)
||++++|+||+++||||+|++. +++.+++++|++.||.+++
T Consensus 153 tg~~~~a~eA~~~Glv~~v~~~----~~a~~~a~~l~~~~~~a~~----------------------------------- 193 (243)
T PRK07854 153 GAEKLTAEQALATGMANRIGTL----ADAQAWAAEIAGLAPLALQ----------------------------------- 193 (243)
T ss_pred cCCCcCHHHHHHCCCcccccCH----HHHHHHHHHHHhCCHHHHH-----------------------------------
Confidence 9999999999999999999762 2789999999999886543
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHhHHHHHHHhhhccC
Q 007805 245 QACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSK 294 (589)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~af~~~r~~~~ 294 (589)
.+|++++.. .+++++++.|...+..++.++|+++++.+|++||++.+
T Consensus 194 -~~K~~l~~~--~~~~~~~~~e~~~~~~~~~~~d~~eg~~af~~kr~p~~ 240 (243)
T PRK07854 194 -HAKRVLNDD--GAIEEAWPAHKELFDKAWASQDAIEAQVARIEKRPPKF 240 (243)
T ss_pred -HHHHHHHcc--CCHHHHHHHHHHHHHHHhcCchHHHHHHHHhCCCCCCC
Confidence 345666654 56889999999999999999999999999999998775
No 79
>PF00378 ECH: Enoyl-CoA hydratase/isomerase family; InterPro: IPR001753 The crotonase superfamily is comprised of mechanistically diverse proteins that share a conserved trimeric quaternary structure (sometimes a hexamer consisting of a dimer of trimers), the core of which consists of 4 turns of a (beta/beta/alpha)n superhelix. Some enzymes in the superfamily have been shown to display dehalogenase, hydratase, and isomerase activities, while others have been implicated in carbon-carbon bond formation and cleavage as well as the hydrolysis of thioesters []. However, these different enzymes share the need to stabilise an enolate anion intermediate derived from an acyl-CoA substrate. This is accomplished by two structurally conserved peptidic NH groups that provide hydrogen bonds to the carbonyl moieties of the acyl-CoA substrates and form an "oxyanion hole". The CoA thioester derivatives bind in a characteristic hooked shape and a conserved tunnel binds the pantetheine group of CoA, which links the 3'-phosphate ADP binding site to the site of reaction []. Enzymes in the crotonase superfamily include: Enoyl-CoA hydratase (crotonase; 4.2.1.17 from EC), which catalyses the hydratation of 2-trans-enoyl-CoA into 3-hydroxyacyl-CoA []. 3-2trans-enoyl-CoA isomerase (or dodecenoyl-CoA isomerise; 5.3.3.8 from EC), which shifts the 3-double bond of the intermediates of unsaturated fatty acid oxidation to the 2-trans position []. 3-hydroxbutyryl-CoA dehydratase (crotonase; 4.2.1.55 from EC), a bacterial enzyme involved in the butyrate/butanol-producing pathway. 4-Chlorobenzoyl-CoA dehalogenase (3.8.1.6 from EC), a Pseudomonas enzyme which catalyses the conversion of 4-chlorobenzoate-CoA to 4-hydroxybenzoate-CoA []. Dienoyl-CoA isomerise, which catalyses the isomerisation of 3-trans,5-cis-dienoyl-CoA to 2-trans,4-trans-dienoyl-CoA []. Naphthoate synthase (MenB, or DHNA synthetase; 4.1.3.36 from EC), a bacterial enzyme involved in the biosynthesis of menaquinone (vitamin K2) []. Carnitine racemase (gene caiD), which catalyses the reversible conversion of crotonobetaine to L-carnitine in Escherichia coli []. Methylmalonyl CoA decarboxylase (MMCD; 4.1.1.41 from EC), which has a hexameric structure (dimer of trimers) []. Carboxymethylproline synthase (CarB), which is involved in carbapenem biosynthesis []. 6-oxo camphor hydrolase, which catalyses the desymmetrisation of bicyclic beta-diketones to optically active keto acids []. The alpha subunit of fatty oxidation complex, a multi-enzyme complex that catalyses the last three reactions in the fatty acid beta-oxidation cycle []. AUH protein, a bifunctional RNA-binding homologue of enoyl-CoA hydratase []. This entry represents the core domain found in crotonase superfamily members.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 2VRE_B 3RSI_A 1HZD_F 2ZQR_E 2ZQQ_D 3R9S_C 1O8U_E 1SZO_C 3MOY_A 2UZF_A ....
Probab=100.00 E-value=2e-47 Score=379.75 Aligned_cols=244 Identities=35% Similarity=0.557 Sum_probs=222.3
Q ss_pred EEEEecCcEEEEEeCCC-CCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCCcCCCCchhhhhccCCCcccccchh
Q 007805 7 TMEVGNDGVAIITLINP-PVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDV 85 (589)
Q Consensus 7 ~~~~~~~~v~~i~l~~p-~~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~ 85 (589)
.+++ +++|++|+|||| +.|++|.+|+++|.++++.++.|+++|+||++|.+++||+|.|++++... .......+...
T Consensus 1 ~~~~-~~~v~~i~ln~p~~~N~l~~~~~~~l~~~l~~~~~d~~v~vvv~~~~~~~F~~G~Dl~~~~~~-~~~~~~~~~~~ 78 (245)
T PF00378_consen 1 KYEI-EDGVATITLNRPEKRNALNPEMLDELEEALDEAEADPDVKVVVISGGGKAFCAGADLKEFLNS-DEEEAREFFRR 78 (245)
T ss_dssp EEEE-ETTEEEEEEECGGGTTEBSHHHHHHHHHHHHHHHHSTTESEEEEEESTSESBESB-HHHHHHH-HHHHHHHHHHH
T ss_pred CEEE-ECCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHhcCCccEEEEeecccccccccchhhhhcc-ccccccccchh
Confidence 3677 899999999999 68999999999999999999999999999999999999999999998775 11223334455
Q ss_pred HHHHHHHHHHhCCCcEEEEeCCcccchhhHHhhhcCEEEEeCCceEeccccccCCCCChhhhhhHhhhcCHHHHHHHHHc
Q 007805 86 SVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLL 165 (589)
Q Consensus 86 ~~~~~~~~l~~~~kp~iaav~G~a~GgG~~lala~D~~ia~~~a~~~~pe~~~Gl~p~~g~~~~l~~~~G~~~a~~l~lt 165 (589)
...++ .++.++|||+||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|+|++|..+|++++++
T Consensus 79 ~~~l~-~~l~~~~kp~Iaav~G~a~GgG~~lala~D~~ia~~~a~f~~pe~~~G~~p~~g~~~~l~r~~g~~~a~~l~l~ 157 (245)
T PF00378_consen 79 FQELL-SRLANFPKPTIAAVNGHAVGGGFELALACDFRIAAEDAKFGFPEVRLGIFPGAGGTFRLPRLIGPSRARELLLT 157 (245)
T ss_dssp HHHHH-HHHHHSSSEEEEEESSEEETHHHHHHHHSSEEEEETTTEEETGGGGGTSSSTSTHHHHHHHHHHHHHHHHHHHH
T ss_pred hcccc-ccchhhhhheeecccccccccccccccccceEEeecccceeeeecccCcccccccccccceeeecccccccccc
Confidence 55667 77999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHcCCcceecCchHHHHHHHHHHHHHHhcChhhhhhhhccCCCCChHHHHHHHHHHHHHHHHhCCCChhHH
Q 007805 166 SKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPNMPQHQ 245 (589)
Q Consensus 166 g~~~~a~~A~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 245 (589)
|++++|+||+++||||+|+|++++.+++.+++++++..|+.+++
T Consensus 158 g~~~~a~eA~~~Glv~~v~~~~~l~~~a~~~a~~l~~~~~~a~~------------------------------------ 201 (245)
T PF00378_consen 158 GEPISAEEALELGLVDEVVPDEELDEEALELAKRLAAKPPSALR------------------------------------ 201 (245)
T ss_dssp TCEEEHHHHHHTTSSSEEESGGGHHHHHHHHHHHHHTSCHHHHH------------------------------------
T ss_pred cccchhHHHHhhcceeEEcCchhhhHHHHHHHHHHhcCCHHHHH------------------------------------
Confidence 99999999999999999999999999999999999999886554
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHhHHHHHHHh
Q 007805 246 ACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQ 289 (589)
Q Consensus 246 ~~~~~~~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~af~~~ 289 (589)
.+|+.++......+++.++.|.+.+..++.++|+++++++|+||
T Consensus 202 ~~K~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~f~eK 245 (245)
T PF00378_consen 202 ATKKALNRALEQSLEEALEFEQDLFAECFKSEDFQEGIAAFLEK 245 (245)
T ss_dssp HHHHHHHHHHHSHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHcCCHHHHHHHHHHhCc
Confidence 45677787777888999999999999999999999999999987
No 80
>PRK07827 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=9.1e-47 Score=377.39 Aligned_cols=250 Identities=25% Similarity=0.345 Sum_probs=218.5
Q ss_pred CcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCCcCCCCchhhhhcc-CCCc-cc
Q 007805 4 PRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVH-GAGD-VS 80 (589)
Q Consensus 4 ~~~~~~~~~~~v~~i~l~~p~-~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F~aG~Dl~~~~~~~-~~~~-~~ 80 (589)
+.+.++. +++|++|+||||+ .|++|.+|+.+|.++++.++.|+++|+|||||.|++||+|+|++++.... .... ..
T Consensus 6 ~~i~~~~-~~~v~~i~lnrp~~~Nal~~~~~~el~~~l~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~ 84 (260)
T PRK07827 6 TLVRYAV-DGGVATLTLDSPHNRNALSARLVAQLHDGLRAAAADPAVRAVVLTHTGGTFCAGADLSEAGGGGGDPYDAAV 84 (260)
T ss_pred cceEEEe-eCCEEEEEEcCccccCCCCHHHHHHHHHHHHHHhcCCCeeEEEEEcCCCCccCCcChHHHhhcccCchhHHH
Confidence 4577888 7899999999996 79999999999999999999999999999999999999999999875421 1110 11
Q ss_pred ccchhHHHHHHHHHHhCCCcEEEEeCCcccchhhHHhhhcCEEEEeCCceEeccccccCCCCChhhhhhHhhhcCHHHHH
Q 007805 81 LMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAI 160 (589)
Q Consensus 81 ~~~~~~~~~~~~~l~~~~kp~iaav~G~a~GgG~~lala~D~~ia~~~a~~~~pe~~~Gl~p~~g~~~~l~~~~G~~~a~ 160 (589)
.+.....+++ +.+.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|+++++++++ ..+++
T Consensus 85 ~~~~~~~~~~-~~l~~~~kPvIaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~l~-~~~a~ 162 (260)
T PRK07827 85 ARAREMTALL-RAIVELPKPVIAAIDGHVRAGGFGLVGACDIVVAGPESTFALTEARIGVAPAIISLTLLPRLS-PRAAA 162 (260)
T ss_pred HHHHHHHHHH-HHHHhCCCCEEEEEcCeeecchhhHHHhCCEEEEcCCCEEeCcccccCCCCCcccchhHHhhh-HHHHH
Confidence 1122234455 678999999999999999999999999999999999999999999999999999999999875 56999
Q ss_pred HHHHcCCCCCHHHHHHcCCcceecCchHHHHHHHHHHHHHHhcChhhhhhhhccCCCCChHHHHHHHHHHHHHHHHhCCC
Q 007805 161 EMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPN 240 (589)
Q Consensus 161 ~l~ltg~~~~a~~A~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (589)
+++++|++++|+||+++||||++++ ++.+++.++++++++.|+.+++
T Consensus 163 ~l~l~g~~~~a~eA~~~Glv~~v~~--~l~~~a~~~a~~la~~~~~a~~------------------------------- 209 (260)
T PRK07827 163 RYYLTGEKFGAAEAARIGLVTAAAD--DVDAAVAALLADLRRGSPQGLA------------------------------- 209 (260)
T ss_pred HHHHhCCccCHHHHHHcCCcccchH--HHHHHHHHHHHHHHhCCHHHHH-------------------------------
Confidence 9999999999999999999999974 5899999999999999876543
Q ss_pred ChhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHhHHHHHHHhhhccC
Q 007805 241 MPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSK 294 (589)
Q Consensus 241 ~~a~~~~~~~~~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~af~~~r~~~~ 294 (589)
.+|+.++......+++.++.|...+..++.++++++++++|++||+|++
T Consensus 210 -----~~K~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~~kr~p~~ 258 (260)
T PRK07827 210 -----ESKALTTAAVLAGFDRDAEELTEESARLFVSDEAREGMTAFLQKRPPRW 258 (260)
T ss_pred -----HHHHHHHhhhcCCHHHHHHHHHHHHHHHhcChhHHHHHHHHhcCCCCCC
Confidence 4567788877788899999999999999999999999999999988764
No 81
>PRK05617 3-hydroxyisobutyryl-CoA hydrolase; Provisional
Probab=100.00 E-value=6.4e-47 Score=390.49 Aligned_cols=290 Identities=23% Similarity=0.320 Sum_probs=220.0
Q ss_pred CcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCC-CCCcCCCCchhhhhccCCCccc-
Q 007805 4 PRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNG-GRFSGGFDINVFQKVHGAGDVS- 80 (589)
Q Consensus 4 ~~~~~~~~~~~v~~i~l~~p~-~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g-~~F~aG~Dl~~~~~~~~~~~~~- 80 (589)
+.+.+++ +++|++|+||||+ .|++|.+|+.+|.++++.++.|+++|+|||||.| ++||+|+|++++..........
T Consensus 3 ~~v~~~~-~~~v~~itLnrP~~~Nal~~~m~~~L~~~l~~~~~d~~vrvvVltg~g~~~F~aG~Dl~~~~~~~~~~~~~~ 81 (342)
T PRK05617 3 DEVLAEV-EGGVGVITLNRPKALNALSLEMIRAIDAALDAWEDDDAVAAVVIEGAGERGFCAGGDIRALYEAARAGDPLA 81 (342)
T ss_pred ceEEEEE-ECCEEEEEECCCccccCCCHHHHHHHHHHHHHHhhCCCeEEEEEEcCCCCceeCCcCHHHHHhhhccCCchh
Confidence 4688888 8899999999996 6999999999999999999999999999999999 8999999999875421111000
Q ss_pred --ccchhHHHHHHHHHHhCCCcEEEEeCCcccchhhHHhhhcCEEEEeCCceEeccccccCCCCChhhhhhHhhhcCHHH
Q 007805 81 --LMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSK 158 (589)
Q Consensus 81 --~~~~~~~~~~~~~l~~~~kp~iaav~G~a~GgG~~lala~D~~ia~~~a~~~~pe~~~Gl~p~~g~~~~l~~~~G~~~ 158 (589)
.+.....+++ ..+..+|||+||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++| .+
T Consensus 82 ~~~~~~~~~~~~-~~i~~~~kPvIAaVnG~a~GgG~~LalacD~ria~~~a~f~~pe~~lGl~P~~g~~~~L~r~~g-~~ 159 (342)
T PRK05617 82 ADRFFREEYRLN-ALIARYPKPYIALMDGIVMGGGVGISAHGSHRIVTERTKMAMPETGIGFFPDVGGTYFLSRAPG-AL 159 (342)
T ss_pred HHHHHHHHHHHH-HHHHhCCCCEEEEEcCEEEccHhHHhhhCCEEEEcCCCEeeCCccccCcCCCccceeEehhccc-HH
Confidence 1112223445 6789999999999999999999999999999999999999999999999999999999999977 78
Q ss_pred HHHHHHcCCCCCHHHHHHcCCcceecCchHHHHHHHHHHH------------HHHhcChh--------hhhhhhccCCCC
Q 007805 159 AIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWAL------------DIAARRKP--------WIRSLHRTDKLG 218 (589)
Q Consensus 159 a~~l~ltg~~~~a~~A~~~Glv~~vv~~~~l~~~a~~~a~------------~la~~~~~--------~~~~~~~~~~~~ 218 (589)
|++|++||++++|+||+++||||+|||++++.+...++++ .+.+.+.. ....+++.-...
T Consensus 160 a~~llltG~~i~A~eA~~~GLv~~vv~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 239 (342)
T PRK05617 160 GTYLALTGARISAADALYAGLADHFVPSADLPALLDALISLRWDSGADVVDAALAAFATPAPASELAAQRAWIDECFAGD 239 (342)
T ss_pred HHHHHHcCCCCCHHHHHHcCCcceecCHHHHHHHHHHHHhcCCccchhHHHHHHHHhccCCCcchhHHHHHHHHHHhCCC
Confidence 9999999999999999999999999999988776333221 11111000 000000000000
Q ss_pred ChHHHHHHHH-----HHHHHHHH-hCCCChhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHhHHHHHH-Hh-h
Q 007805 219 SLSEAREVLK-----LARLQAKK-TAPNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFF-AQ-R 290 (589)
Q Consensus 219 ~~~~~~~~~~-----~~~~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~af~-~~-r 290 (589)
+.......+. .+....++ ....-.+...+|++++.+...+++++++.|...+..++.++|+++++++|+ +| |
T Consensus 240 ~~~~~~~~l~~~~~~~a~~~a~~i~~~sp~a~~~~k~~l~~~~~~~l~~~~~~e~~~~~~~~~~~d~~egv~afl~ek~r 319 (342)
T PRK05617 240 TVEDIIAALEADGGEFAAKTADTLRSRSPTSLKVTLEQLRRARGLTLEECLRRELRLALAMLRSPDFVEGVRAVLIDKDR 319 (342)
T ss_pred CHHHHHHHHHhccHHHHHHHHHHHHhCCcHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhCCchhhccceEEEcCCC
Confidence 1111111111 12222222 222334667889999988888999999999999999999999999999997 76 7
Q ss_pred hccCCC
Q 007805 291 ATSKVP 296 (589)
Q Consensus 291 ~~~~~~ 296 (589)
+|++.+
T Consensus 320 ~p~~~~ 325 (342)
T PRK05617 320 NPKWSP 325 (342)
T ss_pred CCCCCC
Confidence 777643
No 82
>PRK08321 naphthoate synthase; Validated
Probab=100.00 E-value=3.6e-46 Score=379.46 Aligned_cols=253 Identities=24% Similarity=0.303 Sum_probs=213.5
Q ss_pred CcEEEEEe-cCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCC-------CCCcCCCCchhhhhcc
Q 007805 4 PRVTMEVG-NDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNG-------GRFSGGFDINVFQKVH 74 (589)
Q Consensus 4 ~~~~~~~~-~~~v~~i~l~~p~-~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g-------~~F~aG~Dl~~~~~~~ 74 (589)
.+++++++ +++|++||||||+ .|++|.+|+.+|.++++.++.|+++|+|||||.| ++||+|+|++++....
T Consensus 23 ~~i~~~~~~~~~va~itlnrP~~~Nal~~~~~~~l~~al~~~~~d~~vrvvVltg~g~~~~~~~~~FcaG~Dl~~~~~~~ 102 (302)
T PRK08321 23 TDITYHRAVDQGTVRIAFDRPEVRNAFRPHTVDELYRALDHARMSPDVGCVLLTGNGPSPKDGGWAFCSGGDQRIRGRDG 102 (302)
T ss_pred eeEEEEEecCCCEEEEEeCCcccccCCCHHHHHHHHHHHHHHhhCCCcEEEEEeCCCCCCCCCCCeeecCcChhhhcccc
Confidence 35777763 5789999999996 6999999999999999999999999999999998 5899999999763210
Q ss_pred ----CCC--cc-c--ccchh-HHHHHHHHHHhCCCcEEEEeCCcccchhhHHhhhcCEEEEe-CCceEeccccccCCCCC
Q 007805 75 ----GAG--DV-S--LMPDV-SVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAA-PKTQLGLPELTLGVIPG 143 (589)
Q Consensus 75 ----~~~--~~-~--~~~~~-~~~~~~~~l~~~~kp~iaav~G~a~GgG~~lala~D~~ia~-~~a~~~~pe~~~Gl~p~ 143 (589)
... .. . ..... ..+++ +.+..+||||||+|||+|+|||++|+++||+|||+ ++++|++||+++|++|+
T Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~pkP~IAaV~G~a~GgG~~lalacD~ria~~~~a~f~~pe~~~Gl~p~ 181 (302)
T PRK08321 103 YQYAEGDEADTVDPARAGRLHILEVQ-RLIRFMPKVVIAVVPGWAAGGGHSLHVVCDLTLASREHARFKQTDADVGSFDG 181 (302)
T ss_pred ccccccccccchhhhHHHHHHHHHHH-HHHHcCCCCEEEEEcCeeehHHHHHHHhCCEEEEecCCCEEECCccccccCCC
Confidence 000 00 0 00011 11233 56889999999999999999999999999999999 69999999999999999
Q ss_pred hhhhhhHhhhcCHHHHHHHHHcCCCCCHHHHHHcCCcceecCchHHHHHHHHHHHHHHhcChhhhhhhhccCCCCChHHH
Q 007805 144 FGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEA 223 (589)
Q Consensus 144 ~g~~~~l~~~~G~~~a~~l~ltg~~~~a~~A~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~ 223 (589)
++++++|++++|..+|++|++||++++|+||+++||||++||++++++++.+++++|++.||.+++
T Consensus 182 ~~~~~~L~r~vG~~~A~~l~ltG~~~~A~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~-------------- 247 (302)
T PRK08321 182 GYGSAYLARQVGQKFAREIFFLGRTYSAEEAHDMGAVNAVVPHAELETEALEWAREINGKSPTAMR-------------- 247 (302)
T ss_pred chHHHHHHHHhCHHHHHHHHHcCCccCHHHHHHCCCceEeeCHHHHHHHHHHHHHHHHhCCHHHHH--------------
Confidence 999999999999999999999999999999999999999999999999999999999999987654
Q ss_pred HHHHHHHHHHHHHhCCCChhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHhHHHHHHHhhhccC
Q 007805 224 REVLKLARLQAKKTAPNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSK 294 (589)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~af~~~r~~~~ 294 (589)
.+|++++..... ..+....|.+.+..++.++|+++++.+|++||++++
T Consensus 248 ----------------------~~K~~l~~~~~~-~~~~~~~e~~~~~~~~~~~d~~egi~af~ekr~p~~ 295 (302)
T PRK08321 248 ----------------------MLKYAFNLTDDG-LVGQQLFAGEATRLAYMTDEAQEGRDAFLEKRDPDW 295 (302)
T ss_pred ----------------------HHHHHHHhhhcc-cHHHHHHHHHHHHHHhcCHHHHHHHHHHhccCCCCC
Confidence 345666554443 344455688999999999999999999999998875
No 83
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=100.00 E-value=2.8e-45 Score=377.30 Aligned_cols=273 Identities=32% Similarity=0.504 Sum_probs=244.2
Q ss_pred ccceEEEEcCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cCC
Q 007805 307 GVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEF 385 (589)
Q Consensus 307 ~~~kI~IIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~ 385 (589)
.+++|+|||+|.||++||..|+++|++|++||++++.++.+.+.+.+......+.+. ....+++++.++++ +.+
T Consensus 3 ~~~~I~vIGaG~mG~~iA~~l~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~i~~~~~~~~~~ 77 (311)
T PRK06130 3 PIQNLAIIGAGTMGSGIAALFARKGLQVVLIDVMEGALERARGVIERALGVYAPLGI-----ASAGMGRIRMEAGLAAAV 77 (311)
T ss_pred CccEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHHHHHHhhhccc-----HHHHhhceEEeCCHHHHh
Confidence 478999999999999999999999999999999999988877655443332222211 01223556677777 468
Q ss_pred CCCCEEEEeccCChHHHHHHHHHHHHhCCCCcEEEecCCCCCHHHHhcccCCCCcEEEecCCCCCCCCCeeeEecCCCCC
Q 007805 386 KDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTS 465 (589)
Q Consensus 386 ~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~~~~~~~~~~~r~ig~h~~~p~~~~~lveiv~~~~t~ 465 (589)
++||+||+|||++.+.+++++.++.+.++++++|+|+||+++++++++.+.++.+|+++||++|+..++++++++++.|+
T Consensus 78 ~~aDlVi~av~~~~~~~~~v~~~l~~~~~~~~ii~s~tsg~~~~~l~~~~~~~~~~ig~h~~~p~~~~~l~~i~~g~~t~ 157 (311)
T PRK06130 78 SGADLVIEAVPEKLELKRDVFARLDGLCDPDTIFATNTSGLPITAIAQAVTRPERFVGTHFFTPADVIPLVEVVRGDKTS 157 (311)
T ss_pred ccCCEEEEeccCcHHHHHHHHHHHHHhCCCCcEEEECCCCCCHHHHHhhcCCcccEEEEccCCCCccCceEEEeCCCCCC
Confidence 99999999999999999999999999999999999999999999999888888999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHcCCeeEEE-cCCCCcccccccHHHHHHHHHHHHcCC-CHHHHHHHH-HhcCCC---CcHHHHHHHhc
Q 007805 466 AQVILDLMTVGKIIKKVPVVV-GNCTGFAVNRAFFPYSQSARLLVSLGV-DVFRIDSAI-RSFGLP---IGPFQLLDLAG 539 (589)
Q Consensus 466 ~e~~~~~~~l~~~lG~~~v~v-~d~~Gfi~nRi~~~~~~Ea~~l~~~Gv-~~~~iD~~~-~~~g~p---~Gpf~~~D~~G 539 (589)
+++++.+.++++.+|+.++++ ++.|||++||++.++++||+.++++|. +++++|.++ .++||| +|||+++|.+|
T Consensus 158 ~~~~~~v~~l~~~~G~~~v~~~~d~~G~i~nr~~~~~~~Ea~~l~~~g~~~~~~id~~~~~~~g~~~~~~Gp~~~~D~~G 237 (311)
T PRK06130 158 PQTVATTMALLRSIGKRPVLVKKDIPGFIANRIQHALAREAISLLEKGVASAEDIDEVVKWSLGIRLALTGPLEQRDMNG 237 (311)
T ss_pred HHHHHHHHHHHHHcCCEEEEEcCCCCCcHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHhcCCCCccCCCHHHHhhhhc
Confidence 999999999999999999999 589999999999999999999999975 999999999 899998 69999999999
Q ss_pred hHHHHHHHHHHHHhCCCCCCchHHHHHHHHcCCCCc---ccceeeCCC
Q 007805 540 YGVAAATSKEFDKAFPDRSFQSPLVDLLLKSGRNGN---KGFSFLFVF 584 (589)
Q Consensus 540 ld~~~~~~~~l~~~~~~~~~~~~~l~~~v~~g~~G~---~Gfy~y~~~ 584 (589)
+|++.++++.+++.+++++.|++++++|+++|++|+ +|||+|+++
T Consensus 238 l~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~g~~G~~~g~gfy~y~~~ 285 (311)
T PRK06130 238 LDVHLAVASYLYQDLENRTTPSPLLEEKVEAGELGAKSGQGFYAWPPE 285 (311)
T ss_pred cchHHHHHHHHHHhcCCcCCCCHHHHHHHHcCCccccCCCcCccCCCC
Confidence 999999999999999887779999999999999999 999999864
No 84
>PLN02874 3-hydroxyisobutyryl-CoA hydrolase-like protein
Probab=100.00 E-value=5e-46 Score=388.20 Aligned_cols=290 Identities=22% Similarity=0.255 Sum_probs=217.9
Q ss_pred CCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCCcCCCCchhhhhccCCCc-cc
Q 007805 3 APRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGD-VS 80 (589)
Q Consensus 3 ~~~~~~~~~~~~v~~i~l~~p~-~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~-~~ 80 (589)
++.+.+++ +++|++|+||||+ +|++|.+|+.+|.++++.++.|++||+|||||.|++||+|+|++++........ ..
T Consensus 10 ~~~v~~~~-~~~v~~ItLnrP~~~Nal~~~m~~eL~~al~~~~~d~~vrvvVl~g~g~~FcaG~Dl~~~~~~~~~~~~~~ 88 (379)
T PLN02874 10 EEVVLGEE-KGRVRVITLNRPRQLNVISLSVVSLLAEFLEQWEKDDSVELIIIKGAGRAFSAGGDLKMFYDGRESDDSCL 88 (379)
T ss_pred CCceEEEE-ECCEEEEEECCCccccCCCHHHHHHHHHHHHHHhhCCCeEEEEEECCCCCccCccCHHHHHhhcccchHHH
Confidence 35688888 7899999999996 699999999999999999999999999999999999999999998754221111 01
Q ss_pred ccchhHHHHHHHHHHhCCCcEEEEeCCcccchhhHHhhhcCEEEEeCCceEeccccccCCCCChhhhhhHhhhcCHHHHH
Q 007805 81 LMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAI 160 (589)
Q Consensus 81 ~~~~~~~~~~~~~l~~~~kp~iaav~G~a~GgG~~lala~D~~ia~~~a~~~~pe~~~Gl~p~~g~~~~l~~~~G~~~a~ 160 (589)
........++ ..+.++|||+||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|+|++|. .++
T Consensus 89 ~~~~~~~~l~-~~i~~~~kPvIAaV~G~a~GgG~~LalacD~ria~~~a~f~~pe~~iGl~p~~g~~~~L~rl~g~-~a~ 166 (379)
T PLN02874 89 EVVYRMYWLC-YHIHTYKKTQVALVHGLVMGGGAGLMVPMKFRVVTEKTVFATPEASVGFHTDCGFSYILSRLPGH-LGE 166 (379)
T ss_pred HHHHHHHHHH-HHHHhCCCCEEEEecCeEEecHHHHHHhCCeEEEeCCeEEeccccccCcCCChhHHHHHHhhhHH-HHH
Confidence 1111111233 56889999999999999999999999999999999999999999999999999999999999885 899
Q ss_pred HHHHcCCCCCHHHHHHcCCcceecCchHHHHHHHHHHHHHHhcChhhhhhhhc----------------------cCCCC
Q 007805 161 EMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHR----------------------TDKLG 218 (589)
Q Consensus 161 ~l~ltg~~~~a~~A~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~----------------------~~~~~ 218 (589)
+|++||++++|+||+++||||+|||++++.+.+.++. ++...+...+..+.+ .-..+
T Consensus 167 ~l~ltG~~i~a~eA~~~GLv~~vv~~~~l~~~~~~l~-~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~f~~~ 245 (379)
T PLN02874 167 YLALTGARLNGKEMVACGLATHFVPSEKLPELEKRLL-NLNSGDESAVQEAIEEFSKDVQADEDSILNKQSWINECFSKD 245 (379)
T ss_pred HHHHcCCcccHHHHHHcCCccEEeCHHHHHHHHHHHH-hcCCCCHHHHHHHHHHhhcccCCCcchhHHHHHHHHHHhCCC
Confidence 9999999999999999999999999988876322221 100000000100000 00000
Q ss_pred ChHHHHHHHH---------HHHHHHHHhC-CCChhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhC---CHHHHhHHHH
Q 007805 219 SLSEAREVLK---------LARLQAKKTA-PNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVM---LDTSRGLVHV 285 (589)
Q Consensus 219 ~~~~~~~~~~---------~~~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~l~~E~~~~~~~~~---s~~~~~~i~a 285 (589)
+.....+.+. .+....++-. ..-.+...+|++++.+...+++++++.|......++. ++|++|++++
T Consensus 246 ~~~eii~al~~~~~~~~~~~A~~~a~~l~~~sP~al~~tk~~~~~~~~~~l~~~l~~e~~~~~~~~~~~~~~D~~EGv~A 325 (379)
T PLN02874 246 TVEEIIKAFESEASKTGNEWIKETLKGLRRSSPTGLKITLRSIREGRKQSLAECLKKEFRLTMNILRSTVSDDVYEGIRA 325 (379)
T ss_pred CHHHHHHHHhhcccccccHHHHHHHHHHHhcChHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHhcCcCcchhhccce
Confidence 1111111111 1122222222 2233667889999998888999999999888888877 9999999999
Q ss_pred HH-Hh-hhccCCC
Q 007805 286 FF-AQ-RATSKVP 296 (589)
Q Consensus 286 f~-~~-r~~~~~~ 296 (589)
|+ +| |+|++.+
T Consensus 326 flidK~r~P~w~~ 338 (379)
T PLN02874 326 LVIDKDNAPKWNP 338 (379)
T ss_pred EEEcCCCCCCCCC
Confidence 97 78 8888754
No 85
>TIGR03222 benzo_boxC benzoyl-CoA-dihydrodiol lyase. In the presence of O2, the benzoyl-CoA oxygenase/reductase BoxBA BoxAB converts benzoyl-CoA to 2,3-dihydro-2,3-dihydroxybenzoyl-CoA. Members of this family, BoxC, homologous to enoyl-CoA hydratases/isomerases, hydrolyze this compound to 3,4-dehydroadipyl-CoA semialdehyde + HCOOH.
Probab=100.00 E-value=3e-45 Score=393.89 Aligned_cols=254 Identities=16% Similarity=0.133 Sum_probs=221.2
Q ss_pred CCcEEEEEe-cCcEEEEEeCCCC-C-------------CCCCHHHHHHHHHHHHHHh-cCCCceEEEEEcCCCC-CcCCC
Q 007805 3 APRVTMEVG-NDGVAIITLINPP-V-------------NALAIPIVAGLKDKFEEAT-SRDDVKAIVLTGNGGR-FSGGF 65 (589)
Q Consensus 3 ~~~~~~~~~-~~~v~~i~l~~p~-~-------------N~l~~~~~~~l~~~l~~~~-~~~~v~~vvl~g~g~~-F~aG~ 65 (589)
|.+|.+..+ +++|++||||||+ . |+|+.+|+.+|.++++.++ +|+++|+|||||.|+. ||+|+
T Consensus 255 ~~~~~v~~~~~~~va~itlnrP~~~~~~~~~~~~~~~~Nal~~~~~~~L~~a~~~~~~~d~~vr~vVl~g~G~~~F~aG~ 334 (546)
T TIGR03222 255 YPTVDVAIDRAARTATITLKGPKAAQPADIAAIVAQGANWWPLKLARELDDAILHLRTNELDIGLWVFRTQGDAELVLAA 334 (546)
T ss_pred eeeEEEEEeccCCEEEEEecChhhcCccccccccccccCcCCHHHHHHHHHHHHHHhhCCCCeEEEEEEcCCCCceecCc
Confidence 345555543 6789999999995 7 9999999999999999998 4599999999999987 99999
Q ss_pred CchhhhhccCCCcccccchhHHHHHHHHHHhCCCcEEEEe-CCcccchh-hHHhhhcCEEEE-------eCCceEecccc
Q 007805 66 DINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAV-EGLALGGG-LELAMGCHARIA-------APKTQLGLPEL 136 (589)
Q Consensus 66 Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kp~iaav-~G~a~GgG-~~lala~D~~ia-------~~~a~~~~pe~ 136 (589)
|++.+... ............++++ .+|.++|||+||+| ||+|+||| ++|+++||+||+ +++++|++||+
T Consensus 335 Dl~~~~~~-~~~~~~~~~~~~~~~~-~~l~~~~kpviAav~~G~a~GgG~~eLalacD~~ia~~~~~~~~~~a~f~~~e~ 412 (546)
T TIGR03222 335 DALLEAHK-DHWFVRETIGYLRRTL-ARLDVSSRSLFALIEPGSCFAGTLAELAFAADRSYMLAFPDNNDPEPAITLSEL 412 (546)
T ss_pred Cccccccc-cchhHHHHHHHHHHHH-HHHHcCCCCEEEEECCCeEeHHHHHHHHHhCceeeecCCCCCCCCCCEEeCCcc
Confidence 99843211 1100111112233455 67999999999999 89999999 999999999999 89999999999
Q ss_pred ccCCCCChhhhhhHhhhc-CHHHH--HHHHHcCCCCCHHHHHHcCCcceecCchHHHHHHHHHHHHHHhcChhhhhhhhc
Q 007805 137 TLGVIPGFGGTQRLPRLV-GLSKA--IEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHR 213 (589)
Q Consensus 137 ~~Gl~p~~g~~~~l~~~~-G~~~a--~~l~ltg~~~~a~~A~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~ 213 (589)
++|++|++|++++|++++ |.+++ +++++||++++|+||+++|||++|||++++++++.++|++|++.||.+++
T Consensus 413 ~lGl~p~~gg~~~L~~~v~G~~~a~~~~~~ltg~~i~A~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~p~a~~---- 488 (546)
T TIGR03222 413 NFGLYPMVNGLSRLATRFYAEPAPVAAVRDKIGQALDAEEAERLGLVTAAPDDIDWEDEIRIALEERASFSPDALT---- 488 (546)
T ss_pred ccccCCCcCcHHHHHHHhcCchhHHHHHHHHhCCCCCHHHHHHcCCcccccCchHHHHHHHHHHHHHHhcCHHHHH----
Confidence 999999999999999998 99999 55999999999999999999999999999999999999999999987654
Q ss_pred cCCCCChHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHhhcCCHHHH-HHHHHHHHHHHhCCHHHHh---HHHHHHHh
Q 007805 214 TDKLGSLSEAREVLKLARLQAKKTAPNMPQHQACLDVIEEGIVHGGYSG-VLKEAKVFKELVMLDTSRG---LVHVFFAQ 289 (589)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-l~~E~~~~~~~~~s~~~~~---~i~af~~~ 289 (589)
.+|++++.+...+++.+ +..|.+.|..++.|+|++| ++++|++|
T Consensus 489 --------------------------------~~K~~l~~~~~~~~~~~~~~~e~~~~~~~~~~~d~~e~~~g~~af~ek 536 (546)
T TIGR03222 489 --------------------------------GLEANLRFAGPETMETRIFGRLTAWQNWIFNRPNAVGENGALKVYGSG 536 (546)
T ss_pred --------------------------------HHHHHHhhcCCcChhhhHHHHHHHHHHHHhcCCcccchhhHHHHHccC
Confidence 45678888888899999 9999999999999999999 99999999
Q ss_pred hhccC
Q 007805 290 RATSK 294 (589)
Q Consensus 290 r~~~~ 294 (589)
|+|+.
T Consensus 537 r~p~f 541 (546)
T TIGR03222 537 KKAQF 541 (546)
T ss_pred CCCCC
Confidence 99874
No 86
>PRK08184 benzoyl-CoA-dihydrodiol lyase; Provisional
Probab=100.00 E-value=2.3e-45 Score=396.36 Aligned_cols=254 Identities=15% Similarity=0.157 Sum_probs=221.7
Q ss_pred CCcEEEEEe-cCcEEEEEeCCCC-C-------------CCCCHHHHHHHHHHHHHHhc-CCCceEEEEEcCCC-CCcCCC
Q 007805 3 APRVTMEVG-NDGVAIITLINPP-V-------------NALAIPIVAGLKDKFEEATS-RDDVKAIVLTGNGG-RFSGGF 65 (589)
Q Consensus 3 ~~~~~~~~~-~~~v~~i~l~~p~-~-------------N~l~~~~~~~l~~~l~~~~~-~~~v~~vvl~g~g~-~F~aG~ 65 (589)
|++|.++++ +++|++||||||+ . |+||.+|+.+|.++++.++. |+++|+|||||.|+ +||+|+
T Consensus 259 ~~~~~v~~~~~~~va~itlnrP~~~Na~~~~~~~~~~~Nal~~~~~~eL~~al~~~~~~d~~vr~vVltg~G~~~F~aG~ 338 (550)
T PRK08184 259 YRHVDVEIDRAARTATITVKAPTAAQPADIAGIVAAGAAWWPLQMARELDDAILHLRTNELDIGTWVLKTEGDAAAVLAA 338 (550)
T ss_pred eEEEEEEEEccCCEEEEEEeCcccccccccccccccccccCCHHHHHHHHHHHHHHHhcCCCeEEEEEEcCCCCcEEeCC
Confidence 556666664 5789999999995 5 79999999999999999986 79999999999994 999999
Q ss_pred CchhhhhccCCCcccccchhHHHHHHHHHHhCCCcEEEEeC-Ccccchh-hHHhhhcCEEEEe-------CCceEecccc
Q 007805 66 DINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVE-GLALGGG-LELAMGCHARIAA-------PKTQLGLPEL 136 (589)
Q Consensus 66 Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kp~iaav~-G~a~GgG-~~lala~D~~ia~-------~~a~~~~pe~ 136 (589)
|++.+.. .............+.++ .+|.++||||||+|| |+|+||| ++|+|+||+|||+ ++++|++||+
T Consensus 339 Dl~~~~~-~~~~~~~~~~~~~~~~~-~~l~~~~kPvIAaV~~G~a~GgG~~eLalacD~~ia~~~~~~~~~~a~f~~pe~ 416 (550)
T PRK08184 339 DATLLAH-KDHWLVRETRGYLRRTL-KRLDVTSRSLFALIEPGSCFAGTLAELALAADRSYMLALPDDNDPAPAITLSAL 416 (550)
T ss_pred Chhhhcc-cchHHHHHHHHHHHHHH-HHHHhCCCCEEEEECCCceehhHHHHHHHHCChhhhcCCCCCCCCCCEEECccc
Confidence 9874321 11100011122233455 679999999999997 9999999 9999999999999 9999999999
Q ss_pred ccCCCCChhhhhhHhhh-cCHHHHHHH--HHcCCCCCHHHHHHcCCcceecCchHHHHHHHHHHHHHHhcChhhhhhhhc
Q 007805 137 TLGVIPGFGGTQRLPRL-VGLSKAIEM--MLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHR 213 (589)
Q Consensus 137 ~~Gl~p~~g~~~~l~~~-~G~~~a~~l--~ltg~~~~a~~A~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~ 213 (589)
++|++|++|++++|+|+ +|.++|+++ ++||++++|+||+++||||+|||++++++++.++|++|++.||.+++
T Consensus 417 ~~Gl~p~~gg~~~L~r~~vG~~~A~~~~l~~tg~~i~A~eA~~~GLv~~vv~~~~l~~~a~~~a~~ia~~~p~a~~---- 492 (550)
T PRK08184 417 NFGLYPMVNGLSRLARRFYGEPDPLAAVRAKIGQPLDADAAEELGLVTAAPDDIDWEDEVRIALEERASLSPDALT---- 492 (550)
T ss_pred cccCCCCCCcHHHhHHHhcChHHHHHHHHHHhCCcCCHHHHHHcCCcccccChHHHHHHHHHHHHHHHhCCHHHHH----
Confidence 99999999999999998 699999997 58999999999999999999999999999999999999999987654
Q ss_pred cCCCCChHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHhhcCCHHHH-HHHHHHHHHHHhCCHHHHh---HHHHHHHh
Q 007805 214 TDKLGSLSEAREVLKLARLQAKKTAPNMPQHQACLDVIEEGIVHGGYSG-VLKEAKVFKELVMLDTSRG---LVHVFFAQ 289 (589)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-l~~E~~~~~~~~~s~~~~~---~i~af~~~ 289 (589)
.+|++++.+...+++++ +..|.+.+..+++|+|++| ++++|++|
T Consensus 493 --------------------------------~~K~~l~~~~~~~~~~~~~~~e~~~~~~~~~~~d~~e~~~g~~af~ek 540 (550)
T PRK08184 493 --------------------------------GMEANLRFAGPETMETRIFGRLTAWQNWIFQRPNAVGEKGALKVYGTG 540 (550)
T ss_pred --------------------------------HHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCCcccccchHHHHhccC
Confidence 45788888888999999 9999999999999999999 99999999
Q ss_pred hhccC
Q 007805 290 RATSK 294 (589)
Q Consensus 290 r~~~~ 294 (589)
|+|+.
T Consensus 541 r~~~f 545 (550)
T PRK08184 541 QKAQF 545 (550)
T ss_pred CCCCC
Confidence 99975
No 87
>PLN02157 3-hydroxyisobutyryl-CoA hydrolase-like protein
Probab=100.00 E-value=2.1e-44 Score=374.73 Aligned_cols=249 Identities=21% Similarity=0.323 Sum_probs=209.1
Q ss_pred CcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCCcCCCCchhhhhccCCCccc--
Q 007805 4 PRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVS-- 80 (589)
Q Consensus 4 ~~~~~~~~~~~v~~i~l~~p~-~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~-- 80 (589)
+.|.+++ +++|++||||||+ .|+||.+|+.+|.++++.++.|+++|+|||+|.|++||+|+|++++..........
T Consensus 37 ~~V~~e~-~g~v~~ItLNRP~~lNALs~~m~~~L~~al~~~~~D~~vrvVVl~G~GkaFcAGgDl~~l~~~~~~~~~~~~ 115 (401)
T PLN02157 37 YQVLVEG-SGCSRTAILNRPPALNALTTHMGYRLQKLYKNWEEDPNIGFVMMKGSGRAFCAGGDIVSLYHLRKRGSPDAI 115 (401)
T ss_pred CceEEEE-ECCEEEEEECCCCccCCCCHHHHHHHHHHHHHHhhCCCCeEEEEECCCCCccCCcCHHHHHhhccccchHHH
Confidence 4578888 7899999999996 69999999999999999999999999999999999999999999886422111111
Q ss_pred -ccchhHHHHHHHHHHhCCCcEEEEeCCcccchhhHHhhhcCEEEEeCCceEeccccccCCCCChhhhhhHhhhcCHHHH
Q 007805 81 -LMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKA 159 (589)
Q Consensus 81 -~~~~~~~~~~~~~l~~~~kp~iaav~G~a~GgG~~lala~D~~ia~~~a~~~~pe~~~Gl~p~~g~~~~l~~~~G~~~a 159 (589)
.+......++ ..|.++|||+||+|||.|+|||++|+++||+||++++++|++||+++|++|++|++++|+|++|. .+
T Consensus 116 ~~~~~~~~~l~-~~i~~~pkPvIA~v~G~a~GGG~~Lal~cD~rvate~a~fa~PE~~iGl~Pd~G~s~~L~rl~G~-~a 193 (401)
T PLN02157 116 REFFSSLYSFI-YLLGTYLKPHVAILNGVTMGGGTGVSIPGTFRVATDRTIFATPETIIGFHPDAGASFNLSHLPGR-LG 193 (401)
T ss_pred HHHHHHHHHHH-HHHHhCCCCEEEEEeCeEeehhHHHHHhCCEEEEeCCCEEEChhhhcCCCCCccHHHHHHHhhhH-HH
Confidence 1111112233 56899999999999999999999999999999999999999999999999999999999999995 89
Q ss_pred HHHHHcCCCCCHHHHHHcCCcceecCchHHHHHHHHHHHHHHhcChhhhhhhhccCCCCChHHHHHHHHHHHHHHHHhCC
Q 007805 160 IEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAP 239 (589)
Q Consensus 160 ~~l~ltg~~~~a~~A~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (589)
++|++||++++|+||+++||||++||++++ +++.+++.+++..+|.+++
T Consensus 194 ~~L~LTG~~i~A~eA~~~GLv~~vVp~~~l-~~~~~~~~~i~~~~p~av~------------------------------ 242 (401)
T PLN02157 194 EYLGLTGLKLSGAEMLACGLATHYIRSEEI-PVMEEQLKKLLTDDPSVVE------------------------------ 242 (401)
T ss_pred HHHHHcCCcCCHHHHHHcCCceEEeCHhHH-HHHHHHHHHHHcCCHHHHH------------------------------
Confidence 999999999999999999999999999998 6788999999887765433
Q ss_pred CChhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHhHHHHH---HHhhhcc
Q 007805 240 NMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVF---FAQRATS 293 (589)
Q Consensus 240 ~~~a~~~~~~~~~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~af---~~~r~~~ 293 (589)
.+|+.++.. ..+...++..|.+.+..++.+++.+|.+.+| .+||++.
T Consensus 243 ------~~k~~~~~~-~~~~~~~l~~~~~~i~~~f~~~d~~ei~~al~~~~~kr~~~ 292 (401)
T PLN02157 243 ------SCLEKCAEV-AHPEKTGVIRRIDLLEKCFSHDTVEEIIDSLEIEAGRRKDT 292 (401)
T ss_pred ------HHHHHHhcc-cCCcchhHHHHHHHHHHHhcCCCHHHHHHHHHhhhcccchH
Confidence 334455443 2345567778899999999999999999999 5555443
No 88
>KOG1679 consensus Enoyl-CoA hydratase [Lipid transport and metabolism]
Probab=100.00 E-value=1.1e-45 Score=334.53 Aligned_cols=246 Identities=29% Similarity=0.464 Sum_probs=221.7
Q ss_pred cCcEEEEEeCCC-CCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcC-CCCCcCCCCchhhhhccCCCcccccchhHHHH
Q 007805 12 NDGVAIITLINP-PVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGN-GGRFSGGFDINVFQKVHGAGDVSLMPDVSVEL 89 (589)
Q Consensus 12 ~~~v~~i~l~~p-~~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~-g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~ 89 (589)
+.||.+|-+||| +.|+++.-|++.|.++++++..|+.+|+|+|.+. ++.||+|+||++...+++.. ...+......+
T Consensus 38 ~~GItvl~mNRpa~kNsl~r~~~~~l~~~l~~lk~D~~~RvvilrS~vpgvFCaGADLKER~~Ms~~E-v~~fV~~lR~~ 116 (291)
T KOG1679|consen 38 DEGITILNMNRPAKKNSLGRVFVKQLREVLDELKYDNKVRVVILRSLVPGVFCAGADLKERKTMSPSE-VTRFVNGLRGL 116 (291)
T ss_pred CCCeEEEecCChhhhccHHHHHHHHHHHHHHHHhhCCceeEEEEecCCCceeecCcchHhhhcCCHHH-HHHHHHHHHHH
Confidence 678999999999 5899999999999999999999999999999765 67899999999987764432 33444455556
Q ss_pred HHHHHHhCCCcEEEEeCCcccchhhHHhhhcCEEEEeCCceEeccccccCCCCChhhhhhHhhhcCHHHHHHHHHcCCCC
Q 007805 90 VVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSI 169 (589)
Q Consensus 90 ~~~~l~~~~kp~iaav~G~a~GgG~~lala~D~~ia~~~a~~~~pe~~~Gl~p~~g~~~~l~~~~G~~~a~~l~ltg~~~ 169 (589)
+ ..+.++|.|+||+|+|.++|||+||+|+||+|+|+++++|+++|.+++++|+.||||||||.+|...|+|+++|++.+
T Consensus 117 ~-~dIe~Lp~P~IAAidG~ALGGGLElALACDiRva~s~akmGLvET~laiiPGaGGtQRLpR~vg~alaKELIftarvl 195 (291)
T KOG1679|consen 117 F-NDIERLPQPVIAAIDGAALGGGLELALACDIRVAASSAKMGLVETKLAIIPGAGGTQRLPRIVGVALAKELIFTARVL 195 (291)
T ss_pred H-HHHHhCCccceehhcchhcccchhhhhhccceehhhhccccccccceeeecCCCccchhHHHHhHHHHHhHhhhheec
Confidence 6 679999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHcCCcceecCch----HHHHHHHHHHHHHHhcChhhhhhhhccCCCCChHHHHHHHHHHHHHHHHhCCCChhHH
Q 007805 170 TSEEGWKLGLIDAVVTSE----ELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPNMPQHQ 245 (589)
Q Consensus 170 ~a~~A~~~Glv~~vv~~~----~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 245 (589)
++.||..+||||+||... .....+.++|++|..+.|.+++
T Consensus 196 ~g~eA~~lGlVnhvv~qneegdaa~~kal~lA~eilp~gPiavr------------------------------------ 239 (291)
T KOG1679|consen 196 NGAEAAKLGLVNHVVEQNEEGDAAYQKALELAREILPQGPIAVR------------------------------------ 239 (291)
T ss_pred cchhHHhcchHHHHHhcCccccHHHHHHHHHHHHhccCCchhhh------------------------------------
Confidence 999999999999999655 6777788888888877775443
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHhHHHHHHHhhhccCC
Q 007805 246 ACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKV 295 (589)
Q Consensus 246 ~~~~~~~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~af~~~r~~~~~ 295 (589)
.+|.+|+.+.+.++..++..|..++++...+.|-.|++.+|.+||+|...
T Consensus 240 ~aKlAIn~G~evdiasgl~iEe~CYaq~i~t~drLeglaaf~ekr~p~y~ 289 (291)
T KOG1679|consen 240 LAKLAINLGMEVDIASGLSIEEMCYAQIIPTKDRLEGLAAFKEKRKPEYK 289 (291)
T ss_pred HHHHHhccCceecccccccHHHHHHHhcCcHHHHHHHHHHHHhhcCCCcC
Confidence 55789999999999999999999999999999999999999999998753
No 89
>PRK08290 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=4.3e-44 Score=361.83 Aligned_cols=239 Identities=26% Similarity=0.325 Sum_probs=205.5
Q ss_pred CCCCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCCcCCCCchhhhhccCC---
Q 007805 1 MAAPRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGA--- 76 (589)
Q Consensus 1 M~~~~~~~~~~~~~v~~i~l~~p~-~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~--- 76 (589)
|+++.+.++. +++|++|+||||+ .|++|.+|+++|.+++++++.|+++|+|||||.|++||+|+|++++......
T Consensus 1 ~~~~~v~~~~-~~~Va~ItlnrP~~~Nal~~~~~~eL~~~l~~~~~d~~vrvvVltg~G~~FcaG~Dl~~~~~~~~~~~~ 79 (288)
T PRK08290 1 MEYEYVRYEV-AGRIARITLNRPEARNAQNRQMLYELDAAFRRAEADDAVRVIVLAGAGKHFSAGHDLGSGTPGRDRDPG 79 (288)
T ss_pred CCCceEEEEe-eCCEEEEEecCccccCCCCHHHHHHHHHHHHHHhcCCCeeEEEEECCCCccccCCCccccccccccccc
Confidence 8999999999 8899999999996 6999999999999999999999999999999999999999999986421110
Q ss_pred --------------Cccc-ccc---hhHHHHHHHHHHhCCCcEEEEeCCcccchhhHHhhhcCEEEEeCCceEecccccc
Q 007805 77 --------------GDVS-LMP---DVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTL 138 (589)
Q Consensus 77 --------------~~~~-~~~---~~~~~~~~~~l~~~~kp~iaav~G~a~GgG~~lala~D~~ia~~~a~~~~pe~~~ 138 (589)
.... .+. .....++ ..+.++||||||+|||+|+|||++|+++||+||++++++|++||+++
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~pkPvIAaVnG~a~GgG~~lalacD~ria~e~a~f~~pe~~l 158 (288)
T PRK08290 80 PDQHPTLWWDGATKPGVEQRYAREWEVYLGMC-RRWRDLPKPTIAQVQGACIAGGLMLAWVCDLIVASDDAFFSDPVVRM 158 (288)
T ss_pred cccccccccccccccchhhHHHHHHHHHHHHH-HHHHhCCCCEEEEECCEeeHHHHHHHHhCCEEEeeCCCEecCccccc
Confidence 0000 010 1122344 56889999999999999999999999999999999999999999999
Q ss_pred CCCCChhhhhhHhhhcCHHHHHHHHHcCCCCCHHHHHHcCCcceecCchHHHHHHHHHHHHHHhcChhhhhhhhccCCCC
Q 007805 139 GVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLG 218 (589)
Q Consensus 139 Gl~p~~g~~~~l~~~~G~~~a~~l~ltg~~~~a~~A~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~ 218 (589)
|+ |+ .+++++++++|..++++|++||++++|+||+++||||++||++++++++.+++++|++.|+.+++
T Consensus 159 Gl-~~-~~~~~l~~~iG~~~A~~llltG~~i~A~eA~~~GLV~~vv~~~~l~~~a~~~a~~la~~~~~a~~--------- 227 (288)
T PRK08290 159 GI-PG-VEYFAHPWELGPRKAKELLFTGDRLTADEAHRLGMVNRVVPRDELEAETLELARRIAAMPPFGLR--------- 227 (288)
T ss_pred Cc-Cc-chHHHHHHHhhHHHHHHHHHcCCCCCHHHHHHCCCccEeeCHHHHHHHHHHHHHHHHhCCHHHHH---------
Confidence 98 54 45778999999999999999999999999999999999999999999999999999999986543
Q ss_pred ChHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHhhcC-CHHHHHHHHHHHHHHHh-CCHHH
Q 007805 219 SLSEAREVLKLARLQAKKTAPNMPQHQACLDVIEEGIVH-GGYSGVLKEAKVFKELV-MLDTS 279 (589)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~l~~E~~~~~~~~-~s~~~ 279 (589)
.+|++++..... ++++++..|.......+ +++|.
T Consensus 228 ---------------------------~~K~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (288)
T PRK08290 228 ---------------------------LTKRAVNQTLDAQGFRAALDAVFDLHQLGHAHNAEV 263 (288)
T ss_pred ---------------------------HHHHHHHHHHhhccHHHHHHHHHHHHHHccccchhh
Confidence 446677776665 68999999999999988 77763
No 90
>PRK05869 enoyl-CoA hydratase; Validated
Probab=100.00 E-value=3.1e-44 Score=349.42 Aligned_cols=205 Identities=29% Similarity=0.460 Sum_probs=183.1
Q ss_pred CCcEEEEEe----cCcEEEEEeCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCCcCCCCchhhhhccCCCc
Q 007805 3 APRVTMEVG----NDGVAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGD 78 (589)
Q Consensus 3 ~~~~~~~~~----~~~v~~i~l~~p~~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~ 78 (589)
|+.+.++.. +++|++|+||||+.|++|.+|+.+|.+++++++.|+++|+|||||.|++||+|+|++++.......
T Consensus 2 ~~~~~~~~~~~~~~~~i~~itlnrp~~Nal~~~~~~~l~~~l~~~~~d~~vr~vVltg~g~~FcaG~Dl~~~~~~~~~~- 80 (222)
T PRK05869 2 NEFVNVVVSDGSQDAGLATLLLSRPPTNALTRQVYREIVAAANELGRRDDVAAVILYGGHEIFSAGDDMPELRTLSAQE- 80 (222)
T ss_pred ccchhhhcccCcccCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEECCCCCcCcCcCHHHHhccChhh-
Confidence 466777763 478999999999889999999999999999999999999999999999999999999875432111
Q ss_pred ccccchhHHHHHHHHHHhCCCcEEEEeCCcccchhhHHhhhcCEEEEeCCceEeccccccCCCCChhhhhhHhhhcCHHH
Q 007805 79 VSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSK 158 (589)
Q Consensus 79 ~~~~~~~~~~~~~~~l~~~~kp~iaav~G~a~GgG~~lala~D~~ia~~~a~~~~pe~~~Gl~p~~g~~~~l~~~~G~~~ 158 (589)
........++++ .++.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|..+
T Consensus 81 ~~~~~~~~~~~~-~~i~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~ig~~~ 159 (222)
T PRK05869 81 ADTAARVRQQAV-DAVAAIPKPTVAAITGYALGAGLTLALAADWRVSGDNVKFGATEILAGLAPSGDGMARLTRAAGPSR 159 (222)
T ss_pred HHHHHHHHHHHH-HHHHhCCCCEEEEEcCEeecHHHHHHHhCCEEEecCCCEEcCchhccCCCCCccHHHHHHHHhCHHH
Confidence 111122334566 6799999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCCCCHHHHHHcCCcceecCchHHHHHHHHHHHHHHhcChhhhh
Q 007805 159 AIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIR 209 (589)
Q Consensus 159 a~~l~ltg~~~~a~~A~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~ 209 (589)
+++++++|++++|+||+++||||+++|++++++++.+++++|++.||.+++
T Consensus 160 a~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~ia~~~~~a~~ 210 (222)
T PRK05869 160 AKELVFSGRFFDAEEALALGLIDEMVAPDDVYDAAAAWARRFLDGPPHALA 210 (222)
T ss_pred HHHHHHcCCCcCHHHHHHCCCCCEeeCchHHHHHHHHHHHHHHcCCHHHHH
Confidence 999999999999999999999999999999999999999999999987654
No 91
>PLN02988 3-hydroxyisobutyryl-CoA hydrolase
Probab=100.00 E-value=2.8e-42 Score=358.13 Aligned_cols=291 Identities=21% Similarity=0.287 Sum_probs=227.0
Q ss_pred CCCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCCcCCCCchhhhhccCCCccc
Q 007805 2 AAPRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVS 80 (589)
Q Consensus 2 ~~~~~~~~~~~~~v~~i~l~~p~-~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~ 80 (589)
+...|.++. +++|++|+||||+ .|+||.+|+.+|.++++.++.|+++++|||+|.|++||+|+|++++..........
T Consensus 7 ~~~~v~~~~-~~~i~~ItLnRP~~lNALs~~m~~~L~~al~~~~~d~~v~~VVl~G~G~~FcAGgDl~~l~~~~~~~~~~ 85 (381)
T PLN02988 7 SQSQVLVEE-KSSVRILTLNRPKQLNALSFHMISRLLQLFLAFEEDPSVKLVILKGHGRAFCAGGDVAAVVRDIEQGNWR 85 (381)
T ss_pred cCCceEEEE-ECCEEEEEECCCCccCCCCHHHHHHHHHHHHHHHhCCCeeEEEEECCCCCcccCcCHHHHHhhhcccchh
Confidence 345688888 7899999999997 69999999999999999999999999999999999999999999875321111100
Q ss_pred ---ccchhHHHHHHHHHHhCCCcEEEEeCCcccchhhHHhhhcCEEEEeCCceEeccccccCCCCChhhhhhHhhhcCHH
Q 007805 81 ---LMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLS 157 (589)
Q Consensus 81 ---~~~~~~~~~~~~~l~~~~kp~iaav~G~a~GgG~~lala~D~~ia~~~a~~~~pe~~~Gl~p~~g~~~~l~~~~G~~ 157 (589)
.+......+. ..+.++|||+||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|+|++|.
T Consensus 86 ~~~~~f~~~~~l~-~~i~~~pKPvIa~v~G~a~GGG~~Lal~~D~rvate~a~f~mPE~~iGl~Pd~G~s~~L~rl~G~- 163 (381)
T PLN02988 86 LGANFFSDEYMLN-YVMATYSKAQVSILNGIVMGGGAGVSVHGRFRIATENTVFAMPETALGLFPDVGASYFLSRLPGF- 163 (381)
T ss_pred HHHHHHHHHHHHH-HHHHHCCCCEEEEecCeEeehhhHHhhcCCeEEEcCCcEEeChhhhcCcCCCccHHHHHHHHHHH-
Confidence 1111111233 56889999999999999999999999999999999999999999999999999999999999996
Q ss_pred HHHHHHHcCCCCCHHHHHHcCCcceecCchHHHHHHHHHHHHHHhcChhhhhhhhccCC--C------------------
Q 007805 158 KAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDK--L------------------ 217 (589)
Q Consensus 158 ~a~~l~ltg~~~~a~~A~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~--~------------------ 217 (589)
.+++|++||++++|++|+++||+|++||++++.+.+.+++ +++..+|..++..++... .
T Consensus 164 ~~~~l~LTG~~i~a~eA~~~GLv~~vv~~~~l~~~~~~la-~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~f 242 (381)
T PLN02988 164 FGEYVGLTGARLDGAEMLACGLATHFVPSTRLTALEADLC-RIGSNDPTFASTILDAYTQHPRLKPQSAYHRLDVIDRCF 242 (381)
T ss_pred HHHHHHHcCCCCCHHHHHHcCCceEecCHhHHHHHHHHHH-HhhccCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHh
Confidence 6999999999999999999999999999999999999988 777666554443322110 0
Q ss_pred --CChHHHHHHHHH---------HHHHHHHhCCCCh-hHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhC---CHHHHhH
Q 007805 218 --GSLSEAREVLKL---------ARLQAKKTAPNMP-QHQACLDVIEEGIVHGGYSGVLKEAKVFKELVM---LDTSRGL 282 (589)
Q Consensus 218 --~~~~~~~~~~~~---------~~~~~~~~~~~~~-a~~~~~~~~~~~~~~~~~~~l~~E~~~~~~~~~---s~~~~~~ 282 (589)
.++....+.++. ++...+......| +...+.+.++++...++.+.++.|...-..++. ++|+.||
T Consensus 243 ~~~~~~~i~~~L~~~~~~~~~~wa~~~~~~l~~~sP~sl~vt~~~~~~~~~~sl~e~~~~e~~~~~~~~~~~~~~DF~EG 322 (381)
T PLN02988 243 SRRTVEEIISALEREATQEADGWISATIQALKKASPASLKISLRSIREGRLQGVGQCLIREYRMVCHVMKGEISKDFVEG 322 (381)
T ss_pred CCCCHHHHHHHHHhhccccccHHHHHHHHHHHhcCcHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCCchHHHh
Confidence 011111111111 1111111222233 345677888999999999999999999999998 6999999
Q ss_pred HHHHHH-h-hhccCCC
Q 007805 283 VHVFFA-Q-RATSKVP 296 (589)
Q Consensus 283 i~af~~-~-r~~~~~~ 296 (589)
|+|-+= | +.|+|.|
T Consensus 323 VRA~LiDKd~~P~W~p 338 (381)
T PLN02988 323 CRAILVDKDKNPKWEP 338 (381)
T ss_pred HHHHhcCCCCCCCCCC
Confidence 999875 3 4566654
No 92
>PRK08788 enoyl-CoA hydratase; Validated
Probab=100.00 E-value=3e-42 Score=345.75 Aligned_cols=247 Identities=22% Similarity=0.254 Sum_probs=197.3
Q ss_pred CCcEEEEEe-cCcEEEEEeCCC-CCCCCCHHHHHHHHHHHHHHhc-----CCCceEEEEEcC-CCCCcCCCCchhhhhcc
Q 007805 3 APRVTMEVG-NDGVAIITLINP-PVNALAIPIVAGLKDKFEEATS-----RDDVKAIVLTGN-GGRFSGGFDINVFQKVH 74 (589)
Q Consensus 3 ~~~~~~~~~-~~~v~~i~l~~p-~~N~l~~~~~~~l~~~l~~~~~-----~~~v~~vvl~g~-g~~F~aG~Dl~~~~~~~ 74 (589)
|.++.++.+ +++|++|+|| | +.|++|.+|+.+|.++++++++ |+++|+|||||. |++||+|+|++++....
T Consensus 14 ~~~~~i~~e~~~~ia~itl~-p~~~Nal~~~~~~eL~~al~~~~~~~~~~d~~vrvVVltg~~gk~FcaG~Dl~~~~~~~ 92 (287)
T PRK08788 14 LSQLRVYYEEERNVMWMYMR-AQPRPCFNLELLDDIMNLQRAIRQRLDDSGLPVDFWVLASDVPGVFNLGGDLALFAELI 92 (287)
T ss_pred cCceEEEEEccCCEEEEEEC-CCCCCCCCHHHHHHHHHHHHHHHhhccCCCCCeEEEEEEcCCCCceEeCcCHHHHhhhc
Confidence 344555543 6789999996 7 5799999999999999999998 899999999999 78999999999875321
Q ss_pred CCCcccccchh---HHHHHHHHHH---hCCCcEEEEeCCcccchhhHHhhhcCEEEEeCCceEeccccccCCCCChhhhh
Q 007805 75 GAGDVSLMPDV---SVELVVNLIE---DCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQ 148 (589)
Q Consensus 75 ~~~~~~~~~~~---~~~~~~~~l~---~~~kp~iaav~G~a~GgG~~lala~D~~ia~~~a~~~~pe~~~Gl~p~~g~~~ 148 (589)
.......+... ....+ ..+. .+||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|+++
T Consensus 93 ~~~~~~~~~~~~~~~~~~~-~~l~~~~~~pkPvIAaV~G~a~GgG~~LalacD~ria~~~a~f~~pev~lGl~p~~g~~~ 171 (287)
T PRK08788 93 RAGDRDALLAYARACVDGV-HAFHRGFGAGAISIALVQGDALGGGFEAALSHHTIIAERGAKMGFPEILFNLFPGMGAYS 171 (287)
T ss_pred cccchHHHHHHHHHHHHHH-HHHHHhcCCCCCEEEEECCeeehHHHHHHHhCCEEEecCCCEeeCchhhhCcCCCchHHH
Confidence 11111111111 11222 2233 79999999999999999999999999999999999999999999999999999
Q ss_pred hHhhhcCHHHHHHHHHcCCCCCHHHHHHcCCcceecCchHHHHHHHHHHHHHHhcChhhhhhhhccCCCCChHHHHHHHH
Q 007805 149 RLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLK 228 (589)
Q Consensus 149 ~l~~~~G~~~a~~l~ltg~~~~a~~A~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (589)
+|++++|..++++|++||++++|+||++|||||++||++++.+++.+++++|+.. |.+..
T Consensus 172 ~l~~~vG~~~A~ellltG~~l~A~eA~~~GLV~~vv~~~el~~~a~~~a~~ia~~-~~~~~------------------- 231 (287)
T PRK08788 172 FLARRVGPKLAEELILSGKLYTAEELHDMGLVDVLVEDGQGEAAVRTFIRKSKRK-LNGWR------------------- 231 (287)
T ss_pred HHHHHhhHHHHHHHHHcCCCCCHHHHHHCCCCcEecCchHHHHHHHHHHHHHhcC-ccHHH-------------------
Confidence 9999999999999999999999999999999999999999999999999999976 33221
Q ss_pred HHHHHHHHhCCCChhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCH-HHHhHHHHHHH
Q 007805 229 LARLQAKKTAPNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLD-TSRGLVHVFFA 288 (589)
Q Consensus 229 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~E~~~~~~~~~s~-~~~~~i~af~~ 288 (589)
++|+..+.....++++.++.|...+..++++. ...+-+.+|..
T Consensus 232 -----------------a~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (287)
T PRK08788 232 -----------------AMLRARRRVNPLSLEELMDITEIWVDAALQLEEKDLRTMERLVR 275 (287)
T ss_pred -----------------HHHHHHHhhccCCHHHHHHHHHHHHHHHhhcccccHHHHHHHHH
Confidence 22333333344578888888887777655555 44556666653
No 93
>PRK06213 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=7.9e-43 Score=342.33 Aligned_cols=202 Identities=27% Similarity=0.373 Sum_probs=179.4
Q ss_pred CCCCcEEEEEecCcEEEEEeCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCCcCCCCchhhhhccCCCccc
Q 007805 1 MAAPRVTMEVGNDGVAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVS 80 (589)
Q Consensus 1 M~~~~~~~~~~~~~v~~i~l~~p~~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~ 80 (589)
|+ +.+.++. +++|++|+||||+.|++|.+|+.+|.++++.++ +++|+||+||.|++||+|.|++++... .....
T Consensus 1 ~~-~~i~~~~-~~~v~~itln~~~~Nal~~~~~~~l~~~l~~~~--~~~~vvvl~g~g~~F~~G~Dl~~~~~~--~~~~~ 74 (229)
T PRK06213 1 MS-ELVSYTL-EDGVATITLDDGKVNALSPAMIDALNAALDQAE--DDRAVVVITGQPGIFSGGFDLKVMTSG--AQAAI 74 (229)
T ss_pred Cc-ceEEEEe-cCCEEEEEeCCCCCCCCCHHHHHHHHHHHHHhh--ccCcEEEEeCCCCceEcCcCHHHHhcc--hHhHH
Confidence 64 5688888 789999999999889999999999999999998 567999999999999999999987542 11111
Q ss_pred ccchhHHHHHHHHHHhCCCcEEEEeCCcccchhhHHhhhcCEEEEeCC-ceEeccccccCCCCChhhhhhHhhhcCHHHH
Q 007805 81 LMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPK-TQLGLPELTLGVIPGFGGTQRLPRLVGLSKA 159 (589)
Q Consensus 81 ~~~~~~~~~~~~~l~~~~kp~iaav~G~a~GgG~~lala~D~~ia~~~-a~~~~pe~~~Gl~p~~g~~~~l~~~~G~~~a 159 (589)
.+.....+++ +++.++|||+||+|||+|+|||++|+++||+||++++ ++|++||+++|++|+++++.++++++|...+
T Consensus 75 ~~~~~~~~l~-~~l~~~~kPvIAav~G~a~GgG~~lal~~D~rva~~~~a~f~~pe~~~Gl~~~~~~~~~l~~~~g~~~a 153 (229)
T PRK06213 75 ALLTAGSTLA-RRLLSHPKPVIVACTGHAIAKGAFLLLSADYRIGVHGPFKIGLNEVAIGMTMPHAAIELARDRLTPSAF 153 (229)
T ss_pred HHHHHHHHHH-HHHHcCCCCEEEEEcCeeeHHHHHHHHhCCeeeEecCCcEEECchhhhCCcCChHHHHHHHHHcCHHHH
Confidence 2222334555 6789999999999999999999999999999999999 9999999999999888888899999999999
Q ss_pred HHHHHcCCCCCHHHHHHcCCcceecCchHHHHHHHHHHHHHHhcChhhhh
Q 007805 160 IEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIR 209 (589)
Q Consensus 160 ~~l~ltg~~~~a~~A~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~ 209 (589)
++++++|++++|+||+++||||+|||++++.+++.++++++++.++.+++
T Consensus 154 ~~lll~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~a~~ 203 (229)
T PRK06213 154 QRAVINAEMFDPEEAVAAGFLDEVVPPEQLLARAQAAARELAGLNMGAHA 203 (229)
T ss_pred HHHHHcCcccCHHHHHHCCCceeccChHHHHHHHHHHHHHHhcCCHHHHH
Confidence 99999999999999999999999999999999999999999999886543
No 94
>PRK08272 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=4.8e-42 Score=350.11 Aligned_cols=203 Identities=26% Similarity=0.343 Sum_probs=176.4
Q ss_pred CCCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCCcCCCCchhhhhccCCC---
Q 007805 2 AAPRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAG--- 77 (589)
Q Consensus 2 ~~~~~~~~~~~~~v~~i~l~~p~-~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~--- 77 (589)
+|+++.++. +++|++|+||||+ .|++|.+|+.+|.+++++++.|+++|+|||||.|++||+|.|++++.......
T Consensus 8 ~~~~v~~e~-~~~V~~Itlnrp~~~Nal~~~m~~eL~~al~~~~~d~~vrvvVl~G~G~~FcaG~Dl~~~~~~~~~~~~~ 86 (302)
T PRK08272 8 NLKTMTYEV-TGRIARITLNRPEKGNAITADTPLELRAAVERADLDPGVHVILVSGAGKGFCAGYDLSAYAEGSSSGGGG 86 (302)
T ss_pred CCCeEEEEe-ECCEEEEEecCccccCCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCCCCcccCcCHHHHhhcccccccc
Confidence 467899998 7899999999996 79999999999999999999999999999999999999999999875422100
Q ss_pred c----------------ccc-----cchhHHHHHHHHHHhCCCcEEEEeCCcccchhhHHhhhcCEEEEeCCceEecccc
Q 007805 78 D----------------VSL-----MPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPEL 136 (589)
Q Consensus 78 ~----------------~~~-----~~~~~~~~~~~~l~~~~kp~iaav~G~a~GgG~~lala~D~~ia~~~a~~~~pe~ 136 (589)
. ... ......+++ ..+.++||||||+|||+|+|||++|+++||+|||+++++|++||+
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~kPvIAaV~G~a~GgG~~lalacD~~ias~~a~f~~pe~ 165 (302)
T PRK08272 87 GAYPGKRQAVNHLPDDPWDPMIDYQMMSRFVRGF-MSLWHAHKPTVAKVHGYCVAGGTDIALHCDQVIAADDAKIGYPPT 165 (302)
T ss_pred cccccccccccccccccccchhhHHHHHHHHHHH-HHHHhCCCCEEEEEccEeehhhHHHHHhCCEEEEeCCCEecCcch
Confidence 0 000 011223445 568899999999999999999999999999999999999999999
Q ss_pred ccCCCCChhhhhhHhhhcCHHHHHHHHHcCCCCCHHHHHHcCCcceecCchHHHHHHHHHHHHHHhcChhhhh
Q 007805 137 TLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIR 209 (589)
Q Consensus 137 ~~Gl~p~~g~~~~l~~~~G~~~a~~l~ltg~~~~a~~A~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~ 209 (589)
++|.+|.. ..+++++|..+|++|++||++++|+||+++||||++||++++.+++.++|++|++.||.+++
T Consensus 166 ~~gg~~~~---~~~~~~vG~~~A~~llltG~~i~a~eA~~~GLv~~vv~~~~l~~~a~~la~~ia~~~~~a~~ 235 (302)
T PRK08272 166 RVWGVPAT---GMWAYRLGPQRAKRLLFTGDCITGAQAAEWGLAVEAVPPEELDERTERLVERIAAVPVNQLA 235 (302)
T ss_pred hcccCChH---HHHHHHhhHHHHHHHHHcCCccCHHHHHHcCCCceecCHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 98666643 35788999999999999999999999999999999999999999999999999999987665
No 95
>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=100.00 E-value=2.1e-40 Score=339.82 Aligned_cols=262 Identities=26% Similarity=0.352 Sum_probs=245.5
Q ss_pred cceEEEEcCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cCCC
Q 007805 308 VRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFK 386 (589)
Q Consensus 308 ~~kI~IIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~ 386 (589)
|++|+|||+|.||++||..|+++|++|++||++++.++.+.++++..+..+.+.|.++..+....+++++.++++ ++++
T Consensus 2 ~~~V~VIG~G~mG~~iA~~la~~G~~V~v~d~~~~~~~~~~~~~~~~l~~l~~~g~~~~~~~~~~~~~i~~~~~~~~a~~ 81 (308)
T PRK06129 2 MGSVAIIGAGLIGRAWAIVFARAGHEVRLWDADPAAAAAAPAYIAGRLEDLAAFDLLDGEAPDAVLARIRVTDSLADAVA 81 (308)
T ss_pred CcEEEEECccHHHHHHHHHHHHCCCeeEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCchhhHHHHhcCeEEECcHHHhhC
Confidence 578999999999999999999999999999999999999999999999999999999888778888888888888 5789
Q ss_pred CCCEEEEeccCChHHHHHHHHHHHHhCCCCcEEEecCCCCCHHHHhcccCCCCcEEEecCCCCCCCCCeeeEecCCCCCH
Q 007805 387 DVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSA 466 (589)
Q Consensus 387 ~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~~~~~~~~~~~r~ig~h~~~p~~~~~lveiv~~~~t~~ 466 (589)
+||+||+|+|++.++|+.+++++.+.++++++++|+||+++++++++.+.++.++++.||++|++.++++|+++++.|++
T Consensus 82 ~ad~Vi~avpe~~~~k~~~~~~l~~~~~~~~ii~ssts~~~~~~la~~~~~~~~~~~~hp~~p~~~~~lveiv~~~~t~~ 161 (308)
T PRK06129 82 DADYVQESAPENLELKRALFAELDALAPPHAILASSTSALLASAFTEHLAGRERCLVAHPINPPYLIPVVEVVPAPWTAP 161 (308)
T ss_pred CCCEEEECCcCCHHHHHHHHHHHHHhCCCcceEEEeCCCCCHHHHHHhcCCcccEEEEecCCCcccCceEEEeCCCCCCH
Confidence 99999999999999999999999999999999999999999999999988999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCCeeEEE-cCCCCcccccccHHHHHHHHHHHHcCC-CHHHHHHHH-HhcCCC---CcHHHHHHHh--
Q 007805 467 QVILDLMTVGKIIKKVPVVV-GNCTGFAVNRAFFPYSQSARLLVSLGV-DVFRIDSAI-RSFGLP---IGPFQLLDLA-- 538 (589)
Q Consensus 467 e~~~~~~~l~~~lG~~~v~v-~d~~Gfi~nRi~~~~~~Ea~~l~~~Gv-~~~~iD~~~-~~~g~p---~Gpf~~~D~~-- 538 (589)
++++.++++++.+|++|+++ ++.+||++||++.++++||+.++++|. ++++||.++ .++|++ +|||++.|..
T Consensus 162 ~~~~~~~~~~~~lG~~~v~v~~~~~G~i~nrl~~a~~~EA~~l~~~g~~~~~~id~~~~~~~g~~~~~~gp~~~~d~~~~ 241 (308)
T PRK06129 162 ATLARAEALYRAAGQSPVRLRREIDGFVLNRLQGALLREAFRLVADGVASVDDIDAVIRDGLGLRWSFMGPFETIDLNAP 241 (308)
T ss_pred HHHHHHHHHHHHcCCEEEEecCCCccHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHhccCCCccCcCHHHHHhcccc
Confidence 99999999999999999999 689999999999999999999999975 999999999 889998 8999999987
Q ss_pred -chHHHHHHHHHHHHhCCCCCC-chHHHHHHHH
Q 007805 539 -GYGVAAATSKEFDKAFPDRSF-QSPLVDLLLK 569 (589)
Q Consensus 539 -Gld~~~~~~~~l~~~~~~~~~-~~~~l~~~v~ 569 (589)
|++..+.....++..+++..+ |+|++.+|++
T Consensus 242 ~g~~~~~~k~~~l~~~~~~~~~~~~~~~~~~~~ 274 (308)
T PRK06129 242 GGVADYAQRYGPMYRRMAAERGQPVPWDGELVA 274 (308)
T ss_pred ccHHHHHHHHHHHHHhhccccCCCchhhHHHHH
Confidence 999999999999999887554 8888988887
No 96
>KOG1681 consensus Enoyl-CoA isomerase [Lipid transport and metabolism]
Probab=100.00 E-value=4.3e-42 Score=314.17 Aligned_cols=257 Identities=24% Similarity=0.344 Sum_probs=223.7
Q ss_pred CCcEEEEE--ecCcEEEEEeCCC-CCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCCcCCCCchhhhhcc----C
Q 007805 3 APRVTMEV--GNDGVAIITLINP-PVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVH----G 75 (589)
Q Consensus 3 ~~~~~~~~--~~~~v~~i~l~~p-~~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F~aG~Dl~~~~~~~----~ 75 (589)
|+.+.+.+ .+..|.++.|||| +.|+++..|+.|+.++++.+..||++|+|||+|+|++||+|+|+..+.... .
T Consensus 18 ~ksl~v~vk~~~~~V~hv~lnRPsk~Nal~~~~w~E~~~cf~~l~~dpdcr~iilsg~GKhFcaGIDl~~~~~~~~~~~~ 97 (292)
T KOG1681|consen 18 YKSLEVSVKSAQPFVYHVQLNRPSKLNALNKVFWREFKECFDSLDRDPDCRAIILSGAGKHFCAGIDLNDMASDRILQPE 97 (292)
T ss_pred cceeeeeecCCCCeEEEEEecCcchhhhhhHHHHHHHHHHHHhhccCCCceEEEEecCCcceecccCcchhhhhhccccc
Confidence 55555553 2556999999999 579999999999999999999999999999999999999999987765421 1
Q ss_pred CCc-------ccccchhHHHHHHHHHHhCCCcEEEEeCCcccchhhHHhhhcCEEEEeCCceEeccccccCCCCChhhhh
Q 007805 76 AGD-------VSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQ 148 (589)
Q Consensus 76 ~~~-------~~~~~~~~~~~~~~~l~~~~kp~iaav~G~a~GgG~~lala~D~~ia~~~a~~~~pe~~~Gl~p~~g~~~ 148 (589)
..+ .+......++.+ ..|.+||||||++|||+|+|+|..|..+||+|+++++|.|..-|+.+|+..+.|..+
T Consensus 98 ~dd~aR~g~~lrr~Ik~~Q~~~-t~ie~CpKPVIaavHg~CiGagvDLiTAcDIRycsqDAffsvkEVDvglaADvGTL~ 176 (292)
T KOG1681|consen 98 GDDVARKGRSLRRIIKRYQDTF-TAIERCPKPVIAAVHGACIGAGVDLITACDIRYCSQDAFFSVKEVDVGLAADVGTLN 176 (292)
T ss_pred cchHhhhhHHHHHHHHHHHHHH-HHHHhCChhHHHHHHhhhccccccceeecceeeecccceeeeeeeeeehhhchhhHh
Confidence 111 112233345556 679999999999999999999999999999999999999999999999999999999
Q ss_pred hHhhhcC-HHHHHHHHHcCCCCCHHHHHHcCCcceecCc-hHHHHHHHHHHHHHHhcChhhhhhhhccCCCCChHHHHHH
Q 007805 149 RLPRLVG-LSKAIEMMLLSKSITSEEGWKLGLIDAVVTS-EELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREV 226 (589)
Q Consensus 149 ~l~~~~G-~~~a~~l~ltg~~~~a~~A~~~Glv~~vv~~-~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (589)
|||..+| ...++++.+|++.++|.||++.|||.+|+|+ +++++.+..+|+.|+.++|.+.+
T Consensus 177 RlpkvVGn~s~~~elafTar~f~a~EAl~~GLvSrvf~dk~~ll~~~l~mA~~Ia~KSpvaVq----------------- 239 (292)
T KOG1681|consen 177 RLPKVVGNQSLARELAFTARKFSADEALDSGLVSRVFPDKEELLNGALPMAELIASKSPVAVQ----------------- 239 (292)
T ss_pred hhhHHhcchHHHHHHHhhhhhcchhhhhhcCcchhhcCCHHHHHhhhHHHHHHhccCCceeee-----------------
Confidence 9999999 8999999999999999999999999999965 68999999999999999997654
Q ss_pred HHHHHHHHHHhCCCChhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHhHHHHHHHhhhccCCC
Q 007805 227 LKLARLQAKKTAPNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKVP 296 (589)
Q Consensus 227 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~af~~~r~~~~~~ 296 (589)
.+|..++.+.+++.+++|..-.-.....+.|+|..+.+.+-++|+++.++.
T Consensus 240 -------------------gTK~~L~ysrehsv~~sLnyvatwNms~L~s~Dl~~av~a~m~k~k~~tfs 290 (292)
T KOG1681|consen 240 -------------------GTKENLLYSREHSVEESLNYVATWNMSMLLSDDLVKAVMAQMEKLKTVTFS 290 (292)
T ss_pred -------------------chHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCcc
Confidence 446788888899999999988888888889999999999999988777554
No 97
>PLN02851 3-hydroxyisobutyryl-CoA hydrolase-like protein
Probab=100.00 E-value=3.1e-40 Score=343.17 Aligned_cols=289 Identities=22% Similarity=0.257 Sum_probs=221.7
Q ss_pred CcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCCcCCCCchhhhhccCCCc---c
Q 007805 4 PRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGD---V 79 (589)
Q Consensus 4 ~~~~~~~~~~~v~~i~l~~p~-~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~---~ 79 (589)
+.|.++. ++++++|+||||+ .|+||.+|+.+|.++++.++.|+++++|||+|.|++||+|+|++++........ .
T Consensus 42 ~~v~~e~-~~~~~~ItLNRP~~lNALs~~m~~eL~~al~~~~~D~~vrvVVL~G~GkaFcAGgDl~~l~~~~~~~~~~~~ 120 (407)
T PLN02851 42 DQVLVEG-RAKSRAAILNRPSSLNALTIPMVARLKRLYESWEENPDIGFVLMKGSGRAFCSGADVVSLYHLINEGNVEEC 120 (407)
T ss_pred CCeEEEE-ECCEEEEEECCCCcCCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCCccCCcCHHHHHhhccccchHHH
Confidence 4577888 7899999999996 699999999999999999999999999999999999999999998864321111 1
Q ss_pred cccchhHHHHHHHHHHhCCCcEEEEeCCcccchhhHHhhhcCEEEEeCCceEeccccccCCCCChhhhhhHhhhcCHHHH
Q 007805 80 SLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKA 159 (589)
Q Consensus 80 ~~~~~~~~~~~~~~l~~~~kp~iaav~G~a~GgG~~lala~D~~ia~~~a~~~~pe~~~Gl~p~~g~~~~l~~~~G~~~a 159 (589)
..+......+. ..+.++|||+||+|||.|+|||++|+++||+||++++++|++||+++|++|++|++++|+|++|. .+
T Consensus 121 ~~~f~~~~~l~-~~i~~~pKPvIA~v~G~amGGG~gLal~~D~rVate~a~famPE~~iGl~PdvG~s~~L~rl~g~-~g 198 (407)
T PLN02851 121 KLFFENLYKFV-YLQGTYLKPNVAIMDGITMGCGAGISIPGMFRVVTDKTVFAHPEVQMGFHPDAGASYYLSRLPGY-LG 198 (407)
T ss_pred HHHHHHHHHHH-HHHHhCCCCEEEEEcCEEeeHHHHHHHhCCEEEEeCCceEecchhccCCCCCccHHHHHHHhcCH-HH
Confidence 11112222344 56789999999999999999999999999999999999999999999999999999999999997 59
Q ss_pred HHHHHcCCCCCHHHHHHcCCcceecCchHHHHHHHHHHHHHHhcChhhhhhhhc-cC---------------------CC
Q 007805 160 IEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHR-TD---------------------KL 217 (589)
Q Consensus 160 ~~l~ltg~~~~a~~A~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~-~~---------------------~~ 217 (589)
++|++||+++++++|+++||+|++||.+++ +.+.+.+.++...++..+....+ .. ..
T Consensus 199 ~~L~LTG~~i~a~eA~~~GLa~~~v~~~~l-~~l~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~I~~~F~~ 277 (407)
T PLN02851 199 EYLALTGQKLNGVEMIACGLATHYCLNARL-PLIEERLGKLLTDDPAVIEDSLAQYGDLVYPDKSSVLHKIETIDKCFGH 277 (407)
T ss_pred HHHHHhCCcCCHHHHHHCCCceeecCHhhH-HHHHHHHHhhccCCHHHHHHHHHHhccccCCCcccHHHHHHHHHHHhCC
Confidence 999999999999999999999999999987 66677776665544333322110 00 00
Q ss_pred CChHHHHHHHHH---------HHHHHHHhCCCCh-hHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHh---CCHHHHhHHH
Q 007805 218 GSLSEAREVLKL---------ARLQAKKTAPNMP-QHQACLDVIEEGIVHGGYSGVLKEAKVFKELV---MLDTSRGLVH 284 (589)
Q Consensus 218 ~~~~~~~~~~~~---------~~~~~~~~~~~~~-a~~~~~~~~~~~~~~~~~~~l~~E~~~~~~~~---~s~~~~~~i~ 284 (589)
.++....+.++. ++...+......| +...+.+.++++...++++.++.|...-..++ .++|+.|||+
T Consensus 278 ~sv~~I~~~L~~~~~~~~~~wa~~~~~~l~~~SP~Sl~vt~~~~~~~~~~sl~e~l~~E~~l~~~~~~~~~~~DF~EGVR 357 (407)
T PLN02851 278 DTVEEIIEALENEAASSYDEWCKKALKKIKEASPLSLKVTLQSIREGRFQTLDQCLAREYRISLCGVSKWVSGDFCEGVR 357 (407)
T ss_pred CCHHHHHHHHHhcccccchHHHHHHHHHHHhcCcHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCccchHHHHHH
Confidence 111211122211 1111122222233 44667788899999999999999999988887 4899999999
Q ss_pred HHHH--hhhccCCC
Q 007805 285 VFFA--QRATSKVP 296 (589)
Q Consensus 285 af~~--~r~~~~~~ 296 (589)
|-+= .++|+|.|
T Consensus 358 A~LIDKd~~P~W~p 371 (407)
T PLN02851 358 ARLVDKDFAPKWDP 371 (407)
T ss_pred HHhcCCCCCCCCCC
Confidence 9875 24555544
No 98
>TIGR03200 dearomat_oah 6-oxocyclohex-1-ene-1-carbonyl-CoA hydrolase. Members of this protein family are 6-oxocyclohex-1-ene-1-carbonyl-CoA hydrolase, a ring-hydrolyzing enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.
Probab=100.00 E-value=3.2e-40 Score=332.70 Aligned_cols=191 Identities=25% Similarity=0.354 Sum_probs=168.5
Q ss_pred EEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCC-CCCcCCCCchhhhhccC--CCcccccchhHHHHH
Q 007805 15 VAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNG-GRFSGGFDINVFQKVHG--AGDVSLMPDVSVELV 90 (589)
Q Consensus 15 v~~i~l~~p~-~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g-~~F~aG~Dl~~~~~~~~--~~~~~~~~~~~~~~~ 90 (589)
+++|+||||+ .|++|.+|+.+|.++++.++.|+++|+|||||.| ++||+|+|++++..... ......+....++++
T Consensus 38 ~A~ItLNRP~k~NAls~~ml~eL~~al~~~~~D~dVrvVVLTG~G~kaFCAG~DLke~~~~~~~~~~~~~~~~~~~~~l~ 117 (360)
T TIGR03200 38 NAWIILDNPKQYNSYTTDMVKAIILAFRRASSDRDVVAVVFTAVGDKAFCTGGNTKEYAEYYAGNPQEYRQYMRLFNDMV 117 (360)
T ss_pred EEEEEECCCCccCCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCCCCcccCCcCHHHHhhhcccChhHHHHHHHHHHHHH
Confidence 4669999996 6999999999999999999999999999999999 69999999998764311 111111222233455
Q ss_pred HHHHHhCCCcEEEEeCCcccchhhHHhhhcCEEEEeCCceEeccccccCCCCChhhhhhHhhhcCHHHHHHHHHcCCCCC
Q 007805 91 VNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSIT 170 (589)
Q Consensus 91 ~~~l~~~~kp~iaav~G~a~GgG~~lala~D~~ia~~~a~~~~pe~~~Gl~p~~g~~~~l~~~~G~~~a~~l~ltg~~~~ 170 (589)
+.+..+||||||+|||.|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|..+|++++++|++++
T Consensus 118 -~~i~~~pKPVIAAVnG~AiGGGleLALaCDlrIAse~A~Fg~PE~rlGl~P~~Ggt~rLprlvG~~rA~~llltGe~~s 196 (360)
T TIGR03200 118 -SAILGCDKPVICRVNGMRIGGGQEIGMAADFTIAQDLANFGQAGPKHGSAPIGGATDFLPLMIGCEQAMVSGTLCEPWS 196 (360)
T ss_pred -HHHHhCCCCEEEEECCEeeeHHHHHHHhCCEEEEcCCCEEeCchhccCCCCCccHHHHHHHhhCHHHHHHHHHhCCcCc
Confidence 6789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCcceecCchHH------------HHHHHHHHHHHHhcChh
Q 007805 171 SEEGWKLGLIDAVVTSEEL------------LKVSRLWALDIAARRKP 206 (589)
Q Consensus 171 a~~A~~~Glv~~vv~~~~l------------~~~a~~~a~~la~~~~~ 206 (589)
|+||+++||||+|||++++ ++.+.++++.+...++.
T Consensus 197 A~EA~~~GLVd~VVp~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~ 244 (360)
T TIGR03200 197 AHKAKRLGIIMDVVPALKVDGKFVANPLVVTDRYLDEFGRIVHGEFKA 244 (360)
T ss_pred HHHHHHcCChheecCchhcCcchhcCcccchHHHHHHHhHHhcCCCcc
Confidence 9999999999999999988 78888888888887765
No 99
>PLN02267 enoyl-CoA hydratase/isomerase family protein
Probab=100.00 E-value=6.8e-40 Score=322.56 Aligned_cols=198 Identities=24% Similarity=0.339 Sum_probs=169.6
Q ss_pred EEEEEecCcEEEEEeCCCCCCCCCHHHHHHHHHHHHHHhcCCCce-EEEEEcCCCCCcCCCCchhhhhccCCCc-ccccc
Q 007805 6 VTMEVGNDGVAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVK-AIVLTGNGGRFSGGFDINVFQKVHGAGD-VSLMP 83 (589)
Q Consensus 6 ~~~~~~~~~v~~i~l~~p~~N~l~~~~~~~l~~~l~~~~~~~~v~-~vvl~g~g~~F~aG~Dl~~~~~~~~~~~-~~~~~ 83 (589)
+.+++ +++|++|+||||+.|++|.+|+++|.+++++++.|++++ +||++|.|++||+|+|++++........ ...+.
T Consensus 2 ~~~~~-~~~v~~i~Lnrp~~Nal~~~~~~eL~~al~~~~~d~~~~~vVV~~g~g~~FsaG~Dl~~~~~~~~~~~~~~~~~ 80 (239)
T PLN02267 2 CTLEK-RGNLFILTLTGDGEHRLNPTLIDSIRSALRQVKSQATPGSVLITTAEGKFFSNGFDLAWAQAAGSAPSRLHLMV 80 (239)
T ss_pred ceeEe-cCCEEEEEeCCCCcCcCCHHHHHHHHHHHHHHHhCCCCceEEEEcCCCCceeCCcCHHHHhccccCHHHHHHHH
Confidence 56777 789999999999889999999999999999999998875 7777999999999999998643211111 11122
Q ss_pred hhHHHHHHHHHHhCCCcEEEEeCCcccchhhHHhhhcCEEEEe-CCceEeccccccCCC-CChhhhhhHhhhcCHHHH-H
Q 007805 84 DVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAA-PKTQLGLPELTLGVI-PGFGGTQRLPRLVGLSKA-I 160 (589)
Q Consensus 84 ~~~~~~~~~~l~~~~kp~iaav~G~a~GgG~~lala~D~~ia~-~~a~~~~pe~~~Gl~-p~~g~~~~l~~~~G~~~a-~ 160 (589)
....+++ ..+.++||||||+|||+|+|||++|+++||+|||+ ++++|++||+++|++ |++ ++++|++++|..++ +
T Consensus 81 ~~~~~~~-~~l~~~~kPvIAaV~G~a~GgG~~lalacD~ria~~~~a~f~~pe~~~Gl~~p~~-~~~~l~~~vG~~~a~~ 158 (239)
T PLN02267 81 AKLRPLV-ADLISLPMPTIAAVTGHASAAGFILALSHDYVLMRKDRGVLYMSEVDIGLPLPDY-FMALLRAKIGSPAARR 158 (239)
T ss_pred HHHHHHH-HHHhcCCCCEEEEECCcchHHHHHHHHHCCEEEecCCCCeEeccccccCCCCChH-HHHHHHHHcChHHHHH
Confidence 2334556 67899999999999999999999999999999998 568999999999997 554 58899999999999 6
Q ss_pred HHHHcCCCCCHHHHHHcCCcceecCc-hHHHHHHHHHHHHHHhcChh
Q 007805 161 EMMLLSKSITSEEGWKLGLIDAVVTS-EELLKVSRLWALDIAARRKP 206 (589)
Q Consensus 161 ~l~ltg~~~~a~~A~~~Glv~~vv~~-~~l~~~a~~~a~~la~~~~~ 206 (589)
+++++|++++|+||+++||||++||+ +++.+++.++|++|++.+++
T Consensus 159 ~llltG~~~~a~eA~~~Glv~~vv~~~~~l~~~a~~~A~~ia~~~~~ 205 (239)
T PLN02267 159 DVLLRAAKLTAEEAVEMGIVDSAHDSAEETVEAAVRLGEELAARKWN 205 (239)
T ss_pred HHHHcCCcCCHHHHHHCCCcceecCCHHHHHHHHHHHHHHHhhccCc
Confidence 99999999999999999999999985 68999999999999998653
No 100
>KOG0016 consensus Enoyl-CoA hydratase/isomerase [Lipid transport and metabolism]
Probab=100.00 E-value=9.5e-39 Score=300.36 Aligned_cols=253 Identities=22% Similarity=0.279 Sum_probs=224.5
Q ss_pred CCCCcEEEEEecCcEEEEEeC-CCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCCcCCCCchhhhhccCCCc
Q 007805 1 MAAPRVTMEVGNDGVAIITLI-NPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGD 78 (589)
Q Consensus 1 M~~~~~~~~~~~~~v~~i~l~-~p~-~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~ 78 (589)
|.++.+.+++ ++++.+|.+| ||+ .|+++.+++.++..++..+.+|+++..++++|.|++||+|.|+..+......+.
T Consensus 4 ~~~~~~vv~~-~~g~~~I~~~~~Pkk~Nal~~e~y~~i~~al~~a~~dds~~~tv~s~~G~~f~sG~Df~~~~~~~~~d~ 82 (266)
T KOG0016|consen 4 MRYREIVVTR-ENGPFFIALNIRPKKKNALNREDYVYIQRALEEANDDDSVSITVLSSNGSYFCSGLDFSPFAKALDDDA 82 (266)
T ss_pred ccccceEEEe-cCCcEEEEecCCCcccccccHHHHHHHHHHHHHhhcccceEEEEEecCccEEeeccccchhhhcCCCcc
Confidence 5677888898 8999999999 996 699999999999999999999999999999999999999999998875433321
Q ss_pred ccc---cchhH--HHHHHHHHHhCCCcEEEEeCCcccchhhHHhhhcCEEEEeCCceEeccccccCCCCChhhhhhHhhh
Q 007805 79 VSL---MPDVS--VELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRL 153 (589)
Q Consensus 79 ~~~---~~~~~--~~~~~~~l~~~~kp~iaav~G~a~GgG~~lala~D~~ia~~~a~~~~pe~~~Gl~p~~g~~~~l~~~ 153 (589)
... ..... ...+.+.+.++|||+||.|||+|+|.|..+...||+|+|+|+++|..|+.++|+.|++|+++.+|++
T Consensus 83 ~~~~~~~~~~v~~~~~~v~~fi~f~Kplia~vNGPAIGlgasil~lcD~V~A~Dka~F~TPfa~lGq~PEG~Ss~t~p~i 162 (266)
T KOG0016|consen 83 NEESDKASKFVKNVSCFVNTFINFPKPLVALVNGPAIGLGASILPLCDYVWASDKAWFQTPFAKLGQSPEGCSSVTLPKI 162 (266)
T ss_pred cccchhhHHHHHHHHHHHHHHhcCCCCEEEEecCCccchhhHHhhhhheEEeccceEEeccchhcCCCCCcceeeeehHh
Confidence 111 11111 1224477899999999999999999999999999999999999999999999999999999999999
Q ss_pred cCHHHHHHHHHcCCCCCHHHHHHcCCcceecCchHHHHHHHHHHHHHHhcChhhhhhhhccCCCCChHHHHHHHHHHHHH
Q 007805 154 VGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQ 233 (589)
Q Consensus 154 ~G~~~a~~l~ltg~~~~a~~A~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (589)
+|...|.||++.|++++|+||.+.|||++++|.+++.+.+..-++++++.+|..++
T Consensus 163 mG~~~A~E~ll~~~kltA~Ea~~~glVskif~~~tf~~~v~~~ikq~s~l~p~sl~------------------------ 218 (266)
T KOG0016|consen 163 MGSASANEMLLFGEKLTAQEACEKGLVSKIFPAETFNEEVLKKIKQYSKLSPESLL------------------------ 218 (266)
T ss_pred hchhhHHHHHHhCCcccHHHHHhcCchhhhcChHHHHHHHHHHHHHHhcCCHHHHH------------------------
Confidence 99999999999999999999999999999999999999999999999999887654
Q ss_pred HHHhCCCChhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHhHHHHHHHhh
Q 007805 234 AKKTAPNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQR 290 (589)
Q Consensus 234 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~af~~~r 290 (589)
..|++++......+..+.+.|.....+.|.|+|+.+.+.+|+.+.
T Consensus 219 ------------~~K~L~rs~~k~~l~~an~~E~~~l~~~W~s~e~~~~~~~~~~~~ 263 (266)
T KOG0016|consen 219 ------------GMKKLLRSNIKEELIKANEEECNVLLKQWVSAECLARFKQYLSKK 263 (266)
T ss_pred ------------HHHHHHHHHHHHHHHHhhHHHHHHHHhhccChHHHHHHHHHhccc
Confidence 346777777777888999999999999999999999999998764
No 101
>COG0447 MenB Dihydroxynaphthoic acid synthase [Coenzyme metabolism]
Probab=100.00 E-value=2.9e-39 Score=293.37 Aligned_cols=252 Identities=29% Similarity=0.389 Sum_probs=205.3
Q ss_pred CCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcC--C-CCCcCCCCchhhhhc---cC
Q 007805 3 APRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGN--G-GRFSGGFDINVFQKV---HG 75 (589)
Q Consensus 3 ~~~~~~~~~~~~v~~i~l~~p~-~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~--g-~~F~aG~Dl~~~~~~---~~ 75 (589)
|+.|.++...++|+.|++|||+ +|++.+..+.||.+++..++.|++|.+|||||. | .+||+|+|-+-.... ..
T Consensus 17 y~dI~Y~~~~~giakItinRPevrNAfrP~TV~Em~~Af~~Ar~d~~vGvi~lTG~~~G~~AFCsGGDQ~vRg~~~gY~~ 96 (282)
T COG0447 17 YEDITYEKSVDGIAKITINRPEVRNAFRPKTVDEMIDAFADARDDPNVGVILLTGNGDGDKAFCSGGDQKVRGDSGGYVD 96 (282)
T ss_pred cceeEEeeccCceEEEEecChhhhccCCCccHHHHHHHHHhhhcCCCccEEEEecCCCCCeeeecCCCceecccCCCccC
Confidence 5678899844899999999996 799999999999999999999999999999985 3 679999998654321 11
Q ss_pred CCcccccchhHHHHHHHHHHhCCCcEEEEeCCcccchhhHHhhhcCEEEEeCCceEeccccccCCCCChhhhhhHhhhcC
Q 007805 76 AGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVG 155 (589)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~l~~~~kp~iaav~G~a~GgG~~lala~D~~ia~~~a~~~~pe~~~Gl~p~~g~~~~l~~~~G 155 (589)
++....+. ..++ .+.|+.+||||||.|+|.++|||-.|-+.||+.||+++|+|+....++|-+-++.|+..|.|.+|
T Consensus 97 d~~~~rLn--vLdl-QrlIR~~PKpViA~V~G~AiGGGhvlhvvCDLTiAa~nA~FgQTgp~VGSFD~G~Gs~ylar~VG 173 (282)
T COG0447 97 DDGIPRLN--VLDL-QRLIRTMPKPVIAMVAGYAIGGGHVLHVVCDLTIAADNAIFGQTGPKVGSFDGGYGSSYLARIVG 173 (282)
T ss_pred CccCcccc--hhhH-HHHHHhCCcceEEEEeeEeccCccEEEEEeeeeeehhcchhcCCCCCcccccCcccHHHHHHHhh
Confidence 11111111 1133 36789999999999999999999999999999999999999999999999988888889999999
Q ss_pred HHHHHHHHHcCCCCCHHHHHHcCCcceecCchHHHHHHHHHHHHHHhcChhhhhhhhccCCCCChHHHHHHHHHHHHHHH
Q 007805 156 LSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAK 235 (589)
Q Consensus 156 ~~~a~~l~ltg~~~~a~~A~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (589)
..+|+|+.+.++.++|+||+++||||.|||.++|++++.+|++++.++||.++|.+
T Consensus 174 qKkArEIwfLcR~Y~A~eal~MGlVN~Vvp~~~LE~e~v~W~~E~l~kSP~AlR~L------------------------ 229 (282)
T COG0447 174 QKKAREIWFLCRQYDAEEALDMGLVNTVVPHADLEKETVQWAREMLAKSPTALRML------------------------ 229 (282)
T ss_pred hhhhHHhhhhhhhccHHHHHhcCceeeeccHHHHHHHHHHHHHHHHhcChHHHHHH------------------------
Confidence 99999999999999999999999999999999999999999999999999877633
Q ss_pred HhCCCChhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHhHHHHHHHhhhccC
Q 007805 236 KTAPNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSK 294 (589)
Q Consensus 236 ~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~af~~~r~~~~ 294 (589)
|-+++. ...++.-.-+.--.+..-.+.|+|++|+..||++||+|..
T Consensus 230 ------------K~Afna-d~DGlaG~q~~ag~at~L~YmTdEa~EGr~AF~eKR~Pdf 275 (282)
T COG0447 230 ------------KAAFNA-DCDGLAGLQELAGNATLLYYMTDEAQEGRDAFLEKRKPDF 275 (282)
T ss_pred ------------HHHhcC-CCchhhHHHHhcccceEEEEechhhhhhHHHHhhccCCCh
Confidence 222221 1112211111222233345679999999999999999864
No 102
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=100.00 E-value=1e-37 Score=293.43 Aligned_cols=180 Identities=40% Similarity=0.620 Sum_probs=161.4
Q ss_pred eEEEEcCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCccCCCCCC
Q 007805 310 KVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKDVD 389 (589)
Q Consensus 310 kI~IIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~aD 389 (589)
||+|||+|.||.+||..++.+|++|++||++++.++.+.+++++.++..+++|.+++.+.+..+++++++++++.+.+||
T Consensus 1 ~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~~~~dl~~~~~ad 80 (180)
T PF02737_consen 1 KVAVIGAGTMGRGIAALFARAGYEVTLYDRSPEALERARKRIERLLDRLVRKGRLSQEEADAALARISFTTDLEEAVDAD 80 (180)
T ss_dssp EEEEES-SHHHHHHHHHHHHTTSEEEEE-SSHHHHHHHHHHHHHHHHHHHHTTTTTHHHHHHHHHTEEEESSGGGGCTES
T ss_pred CEEEEcCCHHHHHHHHHHHhCCCcEEEEECChHHHHhhhhHHHHHHhhhhhhccchhhhhhhhhhhcccccCHHHHhhhh
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999997777999
Q ss_pred EEEEeccCChHHHHHHHHHHHHhCCCCcEEEecCCCCCHHHHhcccCCCCcEEEecCCCCCCCCCeeeEecCCCCCHHHH
Q 007805 390 MVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVI 469 (589)
Q Consensus 390 lVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~~~~~~~~~~~r~ig~h~~~p~~~~~lveiv~~~~t~~e~~ 469 (589)
+||||+||++++|+++|++|++++++++||+||||++++++++..+.+|+||+|+|||+|++.+++|||++++.|+++++
T Consensus 81 lViEai~E~l~~K~~~~~~l~~~~~~~~ilasnTSsl~i~~la~~~~~p~R~ig~Hf~~P~~~~~lVEvv~~~~T~~~~~ 160 (180)
T PF02737_consen 81 LVIEAIPEDLELKQELFAELDEICPPDTILASNTSSLSISELAAALSRPERFIGMHFFNPPHLMPLVEVVPGPKTSPETV 160 (180)
T ss_dssp EEEE-S-SSHHHHHHHHHHHHCCS-TTSEEEE--SSS-HHHHHTTSSTGGGEEEEEE-SSTTT--EEEEEE-TTS-HHHH
T ss_pred eehhhccccHHHHHHHHHHHHHHhCCCceEEecCCCCCHHHHHhccCcCceEEEEecccccccCceEEEeCCCCCCHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCeeEEEcCC
Q 007805 470 LDLMTVGKIIKKVPVVVGNC 489 (589)
Q Consensus 470 ~~~~~l~~~lG~~~v~v~d~ 489 (589)
+.+.++++.+||.|++++|.
T Consensus 161 ~~~~~~~~~~gk~pv~v~D~ 180 (180)
T PF02737_consen 161 DRVRALLRSLGKTPVVVKDT 180 (180)
T ss_dssp HHHHHHHHHTT-EEEEEES-
T ss_pred HHHHHHHHHCCCEEEEecCC
Confidence 99999999999999999874
No 103
>KOG1683 consensus Hydroxyacyl-CoA dehydrogenase/enoyl-CoA hydratase [Lipid transport and metabolism]
Probab=100.00 E-value=2.1e-38 Score=312.85 Aligned_cols=261 Identities=39% Similarity=0.603 Sum_probs=248.5
Q ss_pred CcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCccCCCCCCEEEEeccCC
Q 007805 319 MGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKDVDMVIEAVIES 398 (589)
Q Consensus 319 mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~aDlVIeavpe~ 398 (589)
||++||..+..+|++|++.|.|...++.+..++...+.+.+.+++++..+.......+..+.|++.++++|+|||+|.|+
T Consensus 1 MG~gia~~~~~~~i~~vl~~~n~~~~~~~~~~v~a~l~~~~~~~~~~~~~~~~~~~~L~~~~Dy~~~~~~dmvieav~ed 80 (380)
T KOG1683|consen 1 MGAGIAIVFILAGIRTVLVDANVALLARGILQLAAHLNSEVKRGRLSGLEREKTKSNLVETLDYTGFANADMVIEAVFED 80 (380)
T ss_pred CcchHHHHHHHcCCcEEEEeccHHHHHHhHHHHHHhhhHHHhhccccccchhhhhhhcccccccccccccceeccchhhh
Confidence 89999999999999999999999999999999999999999999999999888889999999999999999999999999
Q ss_pred hHHHHHHHHHHHHhCCCCcEEEecCCCCCHHHHhcccCCCCcEEEecCCCCCCCCCeeeEecCCCCCHHHHHHHHHHHHH
Q 007805 399 VPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMTVGKI 478 (589)
Q Consensus 399 ~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~~~~~~~~~~~r~ig~h~~~p~~~~~lveiv~~~~t~~e~~~~~~~l~~~ 478 (589)
+++|++++.+|++.+++++|+.||||+++++.+++.+..+++++|+|||+|.+.++++|++.+..|+..++..+...-..
T Consensus 81 l~Lk~~l~~~le~v~~~~~i~gsntSs~~~~~isa~ld~~e~vvg~h~fspa~~m~LlEii~~~~tS~~~iA~Ain~~~~ 160 (380)
T KOG1683|consen 81 LELKHELFKSLEKVEPPKCIRGSNTSSLDINVISAGLDRPEMVVGMHFFSPAHWMQLLEIILALYTSKLTIATAINGGSP 160 (380)
T ss_pred HHHHHHHHHHHHhhcCCcceeeeccccCChHHHhhccCchhhhccccccCHHHHHHHHHHHHhcCCCchHHHHHHhcccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCeeEEEcCCCCcccccccHHHHHHHHHHHHc-CCCHHHHHHHHHhcCCCCcHHHHHHHhchHHHHHHHHHHHHhCCCC
Q 007805 479 IKKVPVVVGNCTGFAVNRAFFPYSQSARLLVSL-GVDVFRIDSAIRSFGLPIGPFQLLDLAGYGVAAATSKEFDKAFPDR 557 (589)
Q Consensus 479 lG~~~v~v~d~~Gfi~nRi~~~~~~Ea~~l~~~-Gv~~~~iD~~~~~~g~p~Gpf~~~D~~Gld~~~~~~~~l~~~~~~~ 557 (589)
.|+.|+++++.+||.+||++.+|.+++.+++.+ |++|.++|.++..||||+||+.+.|..|+|+..++...+...++++
T Consensus 161 ~gk~~vvVg~c~gf~v~r~l~~y~~~~~~~l~e~g~~p~~iD~~~t~fGf~~g~~~L~d~~gfdv~eal~~gl~~~~~~r 240 (380)
T KOG1683|consen 161 AGKLPVVVGNCCGFRVNRLLPPYTIGLNELLLEIGADPWLIDSLITKFGFRVGERALADGVGFDVAEALAVGLGDEIGPR 240 (380)
T ss_pred cCCccEEeccCCceEEEecccHHHHHHHHHHHHcCCCHHHHHHHHHhcCccccHHHHhhccCccHHHHHhhccchhccch
Confidence 999999999999999999999999999988888 9999999999999999999999999999999877776665555443
Q ss_pred CCchHHHHHHHHcCCCCc---ccceeeCCC
Q 007805 558 SFQSPLVDLLLKSGRNGN---KGFSFLFVF 584 (589)
Q Consensus 558 ~~~~~~l~~~v~~g~~G~---~Gfy~y~~~ 584 (589)
+.++|++.|+.|+ +|||.|+.+
T Consensus 241 -----~~eel~~~~~~g~kT~kg~y~y~~~ 265 (380)
T KOG1683|consen 241 -----IEEELLEKGRAGIKTGKGIYPYARG 265 (380)
T ss_pred -----hHHHHHHHHhhhhhccCcccccccc
Confidence 7889999999999 999999875
No 104
>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated
Probab=100.00 E-value=5.2e-37 Score=332.98 Aligned_cols=243 Identities=25% Similarity=0.330 Sum_probs=208.0
Q ss_pred cceEEEEcCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cCCC
Q 007805 308 VRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFK 386 (589)
Q Consensus 308 ~~kI~IIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~ 386 (589)
++||+|||+|+||++||..|+++|++|++||+++++++...+.+.......- .+... .....+++++++++ ++++
T Consensus 4 i~kIavIG~G~MG~~iA~~la~~G~~V~v~D~~~~~~~~~~~~~~~~~~~~~---~l~~~-~~~~~g~i~~~~~~~ea~~ 79 (495)
T PRK07531 4 IMKAACIGGGVIGGGWAARFLLAGIDVAVFDPHPEAERIIGEVLANAERAYA---MLTDA-PLPPEGRLTFCASLAEAVA 79 (495)
T ss_pred cCEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHh---hhccc-hhhhhhceEeeCCHHHHhc
Confidence 6789999999999999999999999999999999998765433322221111 11111 11123457778888 6789
Q ss_pred CCCEEEEeccCChHHHHHHHHHHHHhCCCCcEEEecCCCCCHHHHhcccCCCCcEEEecCCCCCCCCCeeeEecCCCCCH
Q 007805 387 DVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSA 466 (589)
Q Consensus 387 ~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~~~~~~~~~~~r~ig~h~~~p~~~~~lveiv~~~~t~~ 466 (589)
+||+||||+||+.++|+++|+++.+++++++||+|+||+++++.+++.+..+.++++.|||||++.++++|+++++.|++
T Consensus 80 ~aD~Vieavpe~~~vk~~l~~~l~~~~~~~~iI~SsTsgi~~s~l~~~~~~~~r~~~~hP~nP~~~~~Lvevv~g~~t~~ 159 (495)
T PRK07531 80 GADWIQESVPERLDLKRRVLAEIDAAARPDALIGSSTSGFLPSDLQEGMTHPERLFVAHPYNPVYLLPLVELVGGGKTSP 159 (495)
T ss_pred CCCEEEEcCcCCHHHHHHHHHHHHhhCCCCcEEEEcCCCCCHHHHHhhcCCcceEEEEecCCCcccCceEEEcCCCCCCH
Confidence 99999999999999999999999999999999999999999999999888899999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCCeeEEE-cCCCCcccccccHHHHHHHHHHHHcC-CCHHHHHHHH-HhcCCC---CcHHHHHHHhch
Q 007805 467 QVILDLMTVGKIIKKVPVVV-GNCTGFAVNRAFFPYSQSARLLVSLG-VDVFRIDSAI-RSFGLP---IGPFQLLDLAGY 540 (589)
Q Consensus 467 e~~~~~~~l~~~lG~~~v~v-~d~~Gfi~nRi~~~~~~Ea~~l~~~G-v~~~~iD~~~-~~~g~p---~Gpf~~~D~~Gl 540 (589)
++++.++++++.+|++++++ ++.+||++||++.++++||+.++++| +++++||+++ .++|++ +|||++.|+.|+
T Consensus 160 e~~~~~~~~~~~lG~~~v~~~k~~~gfi~nrl~~a~~~EA~~L~~~g~~s~~~id~~~~~g~g~~~~~~Gpf~~~dl~g~ 239 (495)
T PRK07531 160 ETIRRAKEILREIGMKPVHIAKEIDAFVGDRLLEALWREALWLVKDGIATTEEIDDVIRYSFGLRWAQMGLFETYRIAGG 239 (495)
T ss_pred HHHHHHHHHHHHcCCEEEeecCCCcchhHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhhccCCCccccchHHHHHhcCc
Confidence 99999999999999999999 69999999999999999999999997 5999999999 788875 899999999985
Q ss_pred H-HHHHHHHHHHHhC
Q 007805 541 G-VAAATSKEFDKAF 554 (589)
Q Consensus 541 d-~~~~~~~~l~~~~ 554 (589)
+ .+.+.++++.+.+
T Consensus 240 ~~g~~~~~~~~~~~~ 254 (495)
T PRK07531 240 EAGMRHFLAQFGPCL 254 (495)
T ss_pred HHHHHHHHHHhchhh
Confidence 4 4566666665554
No 105
>KOG2305 consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid transport and metabolism]
Probab=100.00 E-value=1.5e-37 Score=285.23 Aligned_cols=230 Identities=26% Similarity=0.411 Sum_probs=215.3
Q ss_pred ccceEEEEcCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhc----CCCCHHHHHHHhhcccccCCc
Q 007805 307 GVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTR----GKLTQDKANNALKMLKGVLDY 382 (589)
Q Consensus 307 ~~~kI~IIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~----g~~~~~~~~~~~~~i~~~~~~ 382 (589)
+..||+|+|.|.+|+++|..++..||+|.+||+.++++..+.+.+++.+.++-+. |.++ ++..+..|+.++++
T Consensus 2 s~~ki~ivgSgl~g~~WAmlFAs~GyqVqlYDI~e~Ql~~ALen~~Kel~~Lee~g~lrGnls---a~eqla~is~t~~l 78 (313)
T KOG2305|consen 2 SFGKIAIVGSGLVGSSWAMLFASSGYQVQLYDILEKQLQTALENVEKELRKLEEHGLLRGNLS---ADEQLALISGTTSL 78 (313)
T ss_pred CccceeEeecccccchHHHHHhccCceEEEeeccHHHHHHHHHHHHHHHHHHHHhhhhccCcc---HHHHHHHHhCCccH
Confidence 4689999999999999999999999999999999999999999999998887665 5555 45567889999999
Q ss_pred -cCCCCCCEEEEeccCChHHHHHHHHHHHHhCCCCcEEEecCCCCCHHHHhcccCCCCcEEEecCCCCCCCCCeeeEecC
Q 007805 383 -SEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRT 461 (589)
Q Consensus 383 -~~~~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~~~~~~~~~~~r~ig~h~~~p~~~~~lveiv~~ 461 (589)
|.+++|=.|-||+||++++|+++|++|+..+.+.+|++|+||++.++...+.+.+.++++..||.|||+.+|++|++|.
T Consensus 79 ~E~vk~Ai~iQEcvpE~L~lkk~ly~qlD~i~d~~tIlaSSTSt~mpS~~s~gL~~k~q~lvaHPvNPPyfiPLvElVPa 158 (313)
T KOG2305|consen 79 NELVKGAIHIQECVPEDLNLKKQLYKQLDEIADPTTILASSTSTFMPSKFSAGLINKEQCLVAHPVNPPYFIPLVELVPA 158 (313)
T ss_pred HHHHhhhhhHHhhchHhhHHHHHHHHHHHHhcCCceEEeccccccChHHHhhhhhhhhheeEecCCCCCcccchheeccC
Confidence 7899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHcCCeeEEE-cCCCCcccccccHHHHHHHHHHHHcCC-CHHHHHHHH-HhcCCCC---cHHHHH
Q 007805 462 ERTSAQVILDLMTVGKIIKKVPVVV-GNCTGFAVNRAFFPYSQSARLLVSLGV-DVFRIDSAI-RSFGLPI---GPFQLL 535 (589)
Q Consensus 462 ~~t~~e~~~~~~~l~~~lG~~~v~v-~d~~Gfi~nRi~~~~~~Ea~~l~~~Gv-~~~~iD~~~-~~~g~p~---Gpf~~~ 535 (589)
+.|+++++++.+++++.+|..||.. ++.-||..||++++++||..++++.|+ +..|+|.+| .|+|.+. ||+|++
T Consensus 159 PwTsp~tVdrt~~lM~sigq~pV~l~rei~Gf~lnriq~Ailne~wrLvasGil~v~dvD~VmS~GLG~RYAflG~lET~ 238 (313)
T KOG2305|consen 159 PWTSPDTVDRTRALMRSIGQEPVTLKREILGFALNRIQYAILNETWRLVASGILNVNDVDAVMSAGLGPRYAFLGPLETA 238 (313)
T ss_pred CCCChhHHHHHHHHHHHhCCCCcccccccccceeccccHHHHHHHHHHHHccCcchhhHHHHHhcCCCcchhcccchhhh
Confidence 9999999999999999999999988 789999999999999999999999997 999999999 9999763 999998
Q ss_pred HHhc
Q 007805 536 DLAG 539 (589)
Q Consensus 536 D~~G 539 (589)
++.-
T Consensus 239 HLNA 242 (313)
T KOG2305|consen 239 HLNA 242 (313)
T ss_pred hcCc
Confidence 8764
No 106
>PRK08184 benzoyl-CoA-dihydrodiol lyase; Provisional
Probab=100.00 E-value=8.8e-37 Score=329.81 Aligned_cols=204 Identities=22% Similarity=0.308 Sum_probs=176.9
Q ss_pred CCCCcEEEEEecCcEEEEEeCCC-----------CCCCCCHHHHHHHHHHHHHHh-cCCCceEEEEEcCC-CCCcCCCCc
Q 007805 1 MAAPRVTMEVGNDGVAIITLINP-----------PVNALAIPIVAGLKDKFEEAT-SRDDVKAIVLTGNG-GRFSGGFDI 67 (589)
Q Consensus 1 M~~~~~~~~~~~~~v~~i~l~~p-----------~~N~l~~~~~~~l~~~l~~~~-~~~~v~~vvl~g~g-~~F~aG~Dl 67 (589)
|+++++.+++ +++|++|+|||| +.|++|.+|+.+|.+++++++ +|+++|+|||||.+ ++||+|+|+
T Consensus 12 ~~~~~~~~e~-~~~Va~ItLnrpe~~~~rP~~~~~~Nal~~~m~~eL~~al~~~~~~d~~vrvVVLtg~ggk~FcaG~DL 90 (550)
T PRK08184 12 SQYRHWKLSF-DGPVATLTMDVDEDGGLRPGYKLKLNSYDLGVDIELHDALQRIRFEHPEVRTVVVTSAKDRVFCSGANI 90 (550)
T ss_pred CCCceEEEEe-eCCEEEEEEcCccccccCcccccCCCCCCHHHHHHHHHHHHHHHhcCCCeEEEEEecCCCCCCCCccCH
Confidence 6788999999 789999999954 469999999999999999999 78999999999974 899999999
Q ss_pred hhhhhccCCCcccccch---hHHHHHHHHHHhCCCcEEEEeCCcccchhhHHhhhcCEEEEeCC--ceEeccccc-cCCC
Q 007805 68 NVFQKVHGAGDVSLMPD---VSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPK--TQLGLPELT-LGVI 141 (589)
Q Consensus 68 ~~~~~~~~~~~~~~~~~---~~~~~~~~~l~~~~kp~iaav~G~a~GgG~~lala~D~~ia~~~--a~~~~pe~~-~Gl~ 141 (589)
+++....... ...... .....+.+.+.++||||||+|||+|+|||++|+++|||||++++ ++|++||++ +|++
T Consensus 91 ~~~~~~~~~~-~~~~~~~~~~~~~~l~~~l~~~pkPvIAAVnG~a~GGG~~LALacD~rIas~~~~a~fg~pEv~~~Gl~ 169 (550)
T PRK08184 91 FMLGGSSHAW-KVNFCKFTNETRNGIEDSSRHSGLKFIAAVNGTCAGGGYELALACDEIVLVDDRSSAVSLPEVPLLGVL 169 (550)
T ss_pred HhHhccccch-hhhHHHHHHHHHHHHHHHHHhCCCCEEEEECCEeehHHHHHHHhCCEEEEecCCCcEEEccchhccccC
Confidence 9875321111 001111 11122325677899999999999999999999999999999987 899999997 9999
Q ss_pred CChhhhhhHh--hhcCHHHHHHHHHcCCCCCHHHHHHcCCcceecCchHHHHHHHHHHHHHHhcChh
Q 007805 142 PGFGGTQRLP--RLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKP 206 (589)
Q Consensus 142 p~~g~~~~l~--~~~G~~~a~~l~ltg~~~~a~~A~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~ 206 (589)
|++|++++|+ +++|..+|++|++||++++|+||+++||||++||++++.+++.++|++|++.||.
T Consensus 170 P~~gg~~rl~~~~~vg~~~A~~llltG~~i~AeeA~~~GLVd~vv~~d~l~~~a~~~A~~ia~~~~~ 236 (550)
T PRK08184 170 PGTGGLTRVTDKRKVRRDLADIFCTIEEGVRGKRAVDWRLVDEVVKPSKFDAKVAERAAELAAASDR 236 (550)
T ss_pred CCcchHHHhhhhhhcCHHHHHHHHHhCCcccHHHHHHcCCccEeeCHHHHHHHHHHHHHHHHhCCCC
Confidence 9999999998 7899999999999999999999999999999999999999999999999999874
No 107
>TIGR03222 benzo_boxC benzoyl-CoA-dihydrodiol lyase. In the presence of O2, the benzoyl-CoA oxygenase/reductase BoxBA BoxAB converts benzoyl-CoA to 2,3-dihydro-2,3-dihydroxybenzoyl-CoA. Members of this family, BoxC, homologous to enoyl-CoA hydratases/isomerases, hydrolyze this compound to 3,4-dehydroadipyl-CoA semialdehyde + HCOOH.
Probab=100.00 E-value=8.6e-37 Score=328.56 Aligned_cols=202 Identities=22% Similarity=0.323 Sum_probs=174.5
Q ss_pred CCcEEEEEecCcEEEEEeCCC-----------CCCCCCHHHHHHHHHHHHHHh-cCCCceEEEEEcC-CCCCcCCCCchh
Q 007805 3 APRVTMEVGNDGVAIITLINP-----------PVNALAIPIVAGLKDKFEEAT-SRDDVKAIVLTGN-GGRFSGGFDINV 69 (589)
Q Consensus 3 ~~~~~~~~~~~~v~~i~l~~p-----------~~N~l~~~~~~~l~~~l~~~~-~~~~v~~vvl~g~-g~~F~aG~Dl~~ 69 (589)
++++.+++ +++|++|+|||| +.|++|.+|+.+|.+++++++ .|+++|+|||||. |++||+|+|+++
T Consensus 10 ~~~v~~~~-~g~Va~ItLnrpe~~~~~p~~~~k~Nal~~~~l~eL~~al~~~~~~d~~vRvVVLtg~~Gk~FcaG~DL~~ 88 (546)
T TIGR03222 10 YRHWKLTF-DGPVATLTMDVDEDGGLRPGYKLKLNSYDLGVDIELHDAVQRIRFEHPEVRTVVMTSGKDRVFCSGANIFM 88 (546)
T ss_pred CceEEEEe-eCCEEEEEEecccccccCccccccCCCCCHHHHHHHHHHHHHHHhcCCCeeEEEEecCCCCCCcCCcCHHH
Confidence 46788998 789999999996 469999999999999999999 7899999999987 589999999998
Q ss_pred hhhccCCCcccccchhHH---HHHHHHHHhCCCcEEEEeCCcccchhhHHhhhcCEEEEeCC--ceEeccccc-cCCCCC
Q 007805 70 FQKVHGAGDVSLMPDVSV---ELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPK--TQLGLPELT-LGVIPG 143 (589)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~---~~~~~~l~~~~kp~iaav~G~a~GgG~~lala~D~~ia~~~--a~~~~pe~~-~Gl~p~ 143 (589)
+....... ......... ..+.+.+.++|||+||+|||+|+|||++|+++||+||++++ ++|++||++ +|++|+
T Consensus 89 ~~~~~~~~-~~~~~~~~~~~~~~i~~~i~~~pkPvIAAVnG~a~GGG~~LALacD~rvAs~~a~a~f~~pEv~~lGl~P~ 167 (546)
T TIGR03222 89 LGLSTHAW-KVNFCKFTNETRNGIEDSSRHSGLKFLAAVNGTCAGGGYELALACDEIMLVDDRSSSVSLPEVPLLGVLPG 167 (546)
T ss_pred Hhccccch-hhhHHHHHHHHHHHHHHHHHhCCCCEEEEECCEeehHHHHHHHhCCEEEEecCCCcEEEccchhccCcCCc
Confidence 74321111 011111111 11224577899999999999999999999999999999986 799999997 999999
Q ss_pred hhhhhhHh--hhcCHHHHHHHHHcCCCCCHHHHHHcCCcceecCchHHHHHHHHHHHHHHhcChh
Q 007805 144 FGGTQRLP--RLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKP 206 (589)
Q Consensus 144 ~g~~~~l~--~~~G~~~a~~l~ltg~~~~a~~A~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~ 206 (589)
+|++++++ +++|..+|++|++||++++|+||++|||||+|||++++++++.++|++|++.||.
T Consensus 168 ~gg~~~l~~~~~vg~~~A~~llltG~~i~A~eA~~~GLV~~vv~~~~l~~~a~~lA~~la~~~p~ 232 (546)
T TIGR03222 168 TGGLTRVTDKRRVRRDHADIFCTIEEGVRGKRAKEWRLVDEVVKPSQFDAAIAERAAELAAQSDR 232 (546)
T ss_pred cchhhhccccchhCHHHHHHHHHcCCCccHHHHHHcCCceEEeChHHHHHHHHHHHHHHHhCCCC
Confidence 99999997 7999999999999999999999999999999999999999999999999998864
No 108
>cd06558 crotonase-like Crotonase/Enoyl-Coenzyme A (CoA) hydratase superfamily. This superfamily contains a diverse set of enzymes including enoyl-CoA hydratase, napthoate synthase, methylmalonyl-CoA decarboxylase, 3-hydoxybutyryl-CoA dehydratase, and dienoyl-CoA isomerase. Many of these play important roles in fatty acid metabolism. In addition to a conserved structural core and the formation of trimers (or dimers of trimers), a common feature in this superfamily is the stabilization of an enolate anion intermediate derived from an acyl-CoA substrate. This is accomplished by two conserved backbone NH groups in active sites that form an oxyanion hole.
Probab=100.00 E-value=1.8e-36 Score=290.82 Aligned_cols=192 Identities=44% Similarity=0.704 Sum_probs=173.5
Q ss_pred EEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCCcCCCCchhhhhccCCCc-ccccc
Q 007805 6 VTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGD-VSLMP 83 (589)
Q Consensus 6 ~~~~~~~~~v~~i~l~~p~-~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~-~~~~~ 83 (589)
+.+++ +++|++|+||+|+ .|++|.+|+++|.++++.++.|+++++|||||.|+.||+|.|++++........ ...+.
T Consensus 1 i~~~~-~~~i~~i~l~~~~~~N~~~~~~~~~l~~~l~~~~~d~~~~~vvl~~~~~~Fs~G~dl~~~~~~~~~~~~~~~~~ 79 (195)
T cd06558 1 VLVER-DGGVATITLNRPEKRNALSLEMLDELAAALDEAEADPDVRVVVLTGAGKAFCAGADLKELAALSDAGEEARAFI 79 (195)
T ss_pred CEEEE-ECCEEEEEECCccccCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCceEeCcCHHHHhcccccchhHHHHH
Confidence 35677 6799999999997 799999999999999999999999999999999999999999999876433221 12333
Q ss_pred hhHHHHHHHHHHhCCCcEEEEeCCcccchhhHHhhhcCEEEEeCCceEeccccccCCCCChhhhhhHhhhcCHHHHHHHH
Q 007805 84 DVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMM 163 (589)
Q Consensus 84 ~~~~~~~~~~l~~~~kp~iaav~G~a~GgG~~lala~D~~ia~~~a~~~~pe~~~Gl~p~~g~~~~l~~~~G~~~a~~l~ 163 (589)
....+++ +.+.++|||+||++||+|.|+|++++++||+||++++++|++||+++|++|++|++++|++++|...+++++
T Consensus 80 ~~~~~~~-~~i~~~~~p~Ia~v~G~a~g~G~~la~~~D~~i~~~~~~~~~pe~~~G~~p~~g~~~~l~~~~g~~~a~~~~ 158 (195)
T cd06558 80 RELQELL-RALLRLPKPVIAAVNGAALGGGLELALACDIRIAAEDAKFGLPEVKLGLVPGGGGTQRLPRLVGPARARELL 158 (195)
T ss_pred HHHHHHH-HHHHcCCCCEEEEECCeeecHHHHHHHhCCEEEecCCCEEechhhhcCCCCCCcHHHHHHHHhCHHHHHHHH
Confidence 4445666 678899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCCCCHHHHHHcCCcceecCchHHHHHHHHHHHH
Q 007805 164 LLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALD 199 (589)
Q Consensus 164 ltg~~~~a~~A~~~Glv~~vv~~~~l~~~a~~~a~~ 199 (589)
++|++++++||+++||||+++|.+++.+++.+++++
T Consensus 159 l~g~~~~a~ea~~~Glv~~~~~~~~l~~~a~~~a~~ 194 (195)
T cd06558 159 LTGRRISAEEALELGLVDEVVPDEELLAAALELARR 194 (195)
T ss_pred HcCCccCHHHHHHcCCCCeecChhHHHHHHHHHHhh
Confidence 999999999999999999999999999999988875
No 109
>KOG1682 consensus Enoyl-CoA isomerase [Lipid transport and metabolism]
Probab=100.00 E-value=4.1e-35 Score=263.58 Aligned_cols=245 Identities=23% Similarity=0.341 Sum_probs=206.5
Q ss_pred cCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCCcCCCCchhhhhccCCCcccccchhHHHHH
Q 007805 12 NDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELV 90 (589)
Q Consensus 12 ~~~v~~i~l~~p~-~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~ 90 (589)
+++|-.|+||+|+ +|+++.+|+.+|.+.+..-.++.++|+|||+..|+.||+|.||+++...+..+..........+.+
T Consensus 39 ~~gvR~i~l~npKk~NtLSLaM~~~Lq~~ll~d~d~~dlr~viita~GkifSaGH~LKELt~e~g~d~haevFqtc~dvm 118 (287)
T KOG1682|consen 39 HNGVREITLNNPKKLNTLSLAMMCALQDALLKDKDNLDLRCVIITAQGKIFSAGHNLKELTNEPGSDIHAEVFQTCTDVM 118 (287)
T ss_pred ccceeeeeecCccccchhhHHHHHHHHHHHhhcccccceeEEEEecCCccccccccHHHhhcCccchHHHHHHHHHHHHH
Confidence 6899999999996 799999999999999999888889999999999999999999999976443332223334444566
Q ss_pred HHHHHhCCCcEEEEeCCcccchhhHHhhhcCEEEEeCCceEeccccccCCCCChhhhhhHhhhcCHHHHHHHHHcCCCCC
Q 007805 91 VNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSIT 170 (589)
Q Consensus 91 ~~~l~~~~kp~iaav~G~a~GgG~~lala~D~~ia~~~a~~~~pe~~~Gl~p~~g~~~~l~~~~G~~~a~~l~ltg~~~~ 170 (589)
.-|+++|+|||+-|||.|..+||.|...||+++|+++++|..|-..+|++-..-| .-|.|.+++..+.+|++||++++
T Consensus 119 -n~Irn~pVPVia~VNG~AaAAGcQLVaSCD~vVa~k~SkF~tPG~~vGlFCSTPG-vAlaRavpRkva~~ML~Tg~Pi~ 196 (287)
T KOG1682|consen 119 -NDIRNLPVPVIAKVNGYAAAAGCQLVASCDMVVATKNSKFSTPGAGVGLFCSTPG-VALARAVPRKVAAYMLMTGLPIT 196 (287)
T ss_pred -HHHhcCCCceEEEecchhhhccceEEEeeeEEEEecCccccCCCCceeeEecCcc-hhHhhhcchhHHHHHHHhCCCCc
Confidence 5699999999999999999999999999999999999999999999999643333 34789999999999999999999
Q ss_pred HHHHHHcCCcceecCchHHHHHHHHHHHHHHhcChhhhhhhhccCCCCChHHHHHHHHHHHHHHHHhCCCChhHHHHHHH
Q 007805 171 SEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPNMPQHQACLDV 250 (589)
Q Consensus 171 a~~A~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 250 (589)
++||+..|||++|||++++..++.+++..|-..+...+. .- |+-
T Consensus 197 ~eeAl~sGlvskvVp~~el~~e~~~i~~~i~~~srav~s------------lg------------------------k~f 240 (287)
T KOG1682|consen 197 GEEALISGLVSKVVPAEELDKEIEEITNAIKAKSRAVIS------------LG------------------------KEF 240 (287)
T ss_pred hHHHHHhhhhhhcCCHHHHHHHHHHHHHHHhhhHHHHHH------------HH------------------------HHH
Confidence 999999999999999999999999999999887653321 00 122
Q ss_pred HHHhhcCCHHHHHHHHHHHHHHHhCCHHHHhHHHHHHHhhhccC
Q 007805 251 IEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSK 294 (589)
Q Consensus 251 ~~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~af~~~r~~~~ 294 (589)
......++..+++..-.+.+.+.++-.|.+|+|.+|++||.|.|
T Consensus 241 ~y~q~~ms~~ea~~~~~~~m~~n~ql~d~kegiasf~~krp~~~ 284 (287)
T KOG1682|consen 241 YYKQLAMSQAEAFSAAQEKMCENFQLGDTKEGIASFFEKRPPNW 284 (287)
T ss_pred HHHHHHHhHHHHHHHHHHHHhhcccccchHHHHHHHhccCCCCc
Confidence 23333445667777788888899999999999999999998775
No 110
>KOG1684 consensus Enoyl-CoA hydratase [Lipid transport and metabolism]
Probab=99.97 E-value=3.6e-31 Score=258.79 Aligned_cols=290 Identities=24% Similarity=0.313 Sum_probs=215.4
Q ss_pred CcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcC-CCCCcCCCCchhhhhccCCCcc--
Q 007805 4 PRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGN-GGRFSGGFDINVFQKVHGAGDV-- 79 (589)
Q Consensus 4 ~~~~~~~~~~~v~~i~l~~p~-~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~-g~~F~aG~Dl~~~~~~~~~~~~-- 79 (589)
..|.++. .+....||||||+ .|++|.+|...+.-.+..++.++.+++||+.|. |++||+|+|+........+...
T Consensus 38 ~~VL~e~-~~~~r~itLNRPKaLNAlnleMv~~~~~~L~~we~s~~~k~vIlkgs~~raFCAGgDI~~~ae~~~d~~~~~ 116 (401)
T KOG1684|consen 38 DQVLVEG-KGCARVITLNRPKALNALNLEMVLSIYPKLVEWEKSPLVKLVILKGSGGRAFCAGGDIKAVAESIKDKETPE 116 (401)
T ss_pred CceEEec-CCceeEEEecCchhhccccHHHHHHHHHHHHhhccCCCceEEEEecCCCceeecCccHHHHHHHhhcCCchH
Confidence 4677887 7889999999997 799999999999999999999999999999887 5899999999866543322221
Q ss_pred -cccchhHHHHHHHHHHhCCCcEEEEeCCcccchhhHHhhhcCEEEEeCCceEeccccccCCCCChhhhhhHhhhcCHHH
Q 007805 80 -SLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSK 158 (589)
Q Consensus 80 -~~~~~~~~~~~~~~l~~~~kp~iaav~G~a~GgG~~lala~D~~ia~~~a~~~~pe~~~Gl~p~~g~~~~l~~~~G~~~ 158 (589)
..+...-..+. ..+.++.||.||.++|..+|||++|+...-||||+|++.|++||+.+|++|+.|++++|+|+.| ..
T Consensus 117 ~~~fF~~eYsl~-~~igtY~KP~ValmdGITMGgG~GLS~hg~fRVATerT~~AmPEt~IGlfPDVG~Sy~lsrlpg-~l 194 (401)
T KOG1684|consen 117 VKKFFTEEYSLN-HLIGTYLKPYVALMDGITMGGGVGLSVHGRFRVATERTVFAMPETGIGLFPDVGASYFLSRLPG-YL 194 (401)
T ss_pred HHHHHHHHHHHH-HHHHHhcCceEEEeeceeecCCcceeecceeEEeeccceecccccccccccCccceeehhhCcc-HH
Confidence 11222112333 5688999999999999999999999999999999999999999999999999999999999999 88
Q ss_pred HHHHHHcCCCCCHHHHHHcCCcceecCchHHHHHHHHHHHHHHhcChhhhhhh----hcc---------------CC---
Q 007805 159 AIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSL----HRT---------------DK--- 216 (589)
Q Consensus 159 a~~l~ltg~~~~a~~A~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~----~~~---------------~~--- 216 (589)
..++.|||+++++.||+..||.++.||.+.+..-=.++...+...|...+... ... ++
T Consensus 195 g~YLgLTG~rl~GaD~~~~GlATHyv~S~~l~~Lee~L~~~l~~dp~~~I~~~l~~y~~~~~~~~~~~~~~~~~i~~~Fs 274 (401)
T KOG1684|consen 195 GLYLGLTGQRLSGADALRCGLATHYVPSEKLPSLEERLLKNLNDDPQSVINETLEKYASPAKDESFSLSLKLDVINKCFS 274 (401)
T ss_pred HHhhhhccceecchHHHHhcchhhccchhhhhHHHHHHhhhcCCCcHHHHHHHHHHhcccCCCccccchhhHHHHHHhhc
Confidence 99999999999999999999999999987764433344422222221111111 000 00
Q ss_pred CCChHHHHHHHHH----------HHHHHHHhCCCCh-hHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHhHHHH
Q 007805 217 LGSLSEAREVLKL----------ARLQAKKTAPNMP-QHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHV 285 (589)
Q Consensus 217 ~~~~~~~~~~~~~----------~~~~~~~~~~~~~-a~~~~~~~~~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~a 285 (589)
..+..+..+.++. +....|+...-.| ..+-+.+.+.++....+++.+..|-+.-.....+.|+.|+++|
T Consensus 275 ~~tVeeIie~lk~~q~~~~~~ewak~tlk~L~k~SPtSLkvT~r~i~egs~~tl~~~l~~Eyr~s~~~~~~~DF~EGvRA 354 (401)
T KOG1684|consen 275 ANTVEEIIEALKNYQQSADGSEWAKETLKTLKKMSPTSLKVTLRQIREGSKQTLDQCLTMEYRLSLRMLMRGDFCEGVRA 354 (401)
T ss_pred cccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhcCCchHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhccchhhhhhh
Confidence 0011222222211 1111222222223 4556678888998899999999999998889999999999999
Q ss_pred HHHh--hhccCCC
Q 007805 286 FFAQ--RATSKVP 296 (589)
Q Consensus 286 f~~~--r~~~~~~ 296 (589)
-+-. +.|||.|
T Consensus 355 ~LIDKd~~PKW~p 367 (401)
T KOG1684|consen 355 VLIDKDQNPKWDP 367 (401)
T ss_pred eeecCCcCCCCCC
Confidence 8632 4555543
No 111
>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated
Probab=99.95 E-value=9.6e-28 Score=260.01 Aligned_cols=164 Identities=15% Similarity=0.135 Sum_probs=151.7
Q ss_pred CCCCcEEEecCCCCCHHHHhcccCCCCcEEEecCCCCCCCCCeeeEecCCCCCHHHHHHHHHHHHHcCCeeEEEcCCCCc
Q 007805 413 CPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMTVGKIIKKVPVVVGNCTGF 492 (589)
Q Consensus 413 ~~~~~ii~s~ts~~~~~~~~~~~~~~~r~ig~h~~~p~~~~~lveiv~~~~t~~e~~~~~~~l~~~lG~~~v~v~d~~Gf 492 (589)
+.+++++++..++.+.+..+....+|+|++|+|||+|++.++++|+++++.|++++++.+.++++.+||.|++++|.|||
T Consensus 338 ~~~~~~~~~~~~~~~~~~~~~~~~~p~r~vg~Hf~~P~~~~~lvEvv~~~~Ts~e~~~~~~~~~~~~gk~pi~v~d~~Gf 417 (507)
T PRK08268 338 SADGLVLLAPTGGDTTTAAAREGLDAARVVLIDLLLDYAAAKRRTLMAAPATSPAARDAAHALFQQDGKAVSVIRDSPGF 417 (507)
T ss_pred ccccceEeeccCcchHHHHHHhcCCcccEEEEeccCCcccCceEEEeCCCCCCHHHHHHHHHHHHHcCCeeEEeCCCccH
Confidence 45777777777776666666666788999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccHHHHHHHHHHHHcCC-CHHHHHHHH-HhcCCCCcHHHHHHHhchHHHHHHHHHHHHhCCC-CCCchHHHHHHHH
Q 007805 493 AVNRAFFPYSQSARLLVSLGV-DVFRIDSAI-RSFGLPIGPFQLLDLAGYGVAAATSKEFDKAFPD-RSFQSPLVDLLLK 569 (589)
Q Consensus 493 i~nRi~~~~~~Ea~~l~~~Gv-~~~~iD~~~-~~~g~p~Gpf~~~D~~Gld~~~~~~~~l~~~~~~-~~~~~~~l~~~v~ 569 (589)
|+||++.+++|||++++++|+ +++|||.++ .++|||+|||+|+|.+|+|+++++++++++.+++ ++.|+++|++|++
T Consensus 418 i~nRll~~~~nEa~~ll~eGvas~~dID~a~~~g~G~p~GP~~~~D~~Gld~~~~~~~~l~~~~g~~~~~p~~ll~~~v~ 497 (507)
T PRK08268 418 VAQRTVAMIVNEAADIAQQGIASPADIDLAMRLGLNYPLGPLAWGDRLGAARILRVLENLQALYGDPRYRPSPWLRRRAA 497 (507)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHhcCCCCcCHHHHHHHhCHHHHHHHHHHHHHHhCCCcCCcCHHHHHHHH
Confidence 999999999999999999998 999999999 8999999999999999999999999999999996 5569999999999
Q ss_pred cCCCCccccee
Q 007805 570 SGRNGNKGFSF 580 (589)
Q Consensus 570 ~g~~G~~Gfy~ 580 (589)
+| +.||.
T Consensus 498 ~G----~~~~~ 504 (507)
T PRK08268 498 LG----LSLRS 504 (507)
T ss_pred cC----CCcCC
Confidence 99 77865
No 112
>PF00725 3HCDH: 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain; InterPro: IPR006108 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major region of similarities in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3MOG_A 2WTB_A 3ADP_A 3ADO_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B 3K6J_A 1ZCJ_A ....
Probab=99.89 E-value=1e-23 Score=178.36 Aligned_cols=91 Identities=40% Similarity=0.615 Sum_probs=84.7
Q ss_pred CcccccccHHHHHHHHHHHHcCC-CHHHHHHHH-HhcCCCCcHHHHHHHhchHHHHHHHHHHHHhCCCCCC-chHHHHHH
Q 007805 491 GFAVNRAFFPYSQSARLLVSLGV-DVFRIDSAI-RSFGLPIGPFQLLDLAGYGVAAATSKEFDKAFPDRSF-QSPLVDLL 567 (589)
Q Consensus 491 Gfi~nRi~~~~~~Ea~~l~~~Gv-~~~~iD~~~-~~~g~p~Gpf~~~D~~Gld~~~~~~~~l~~~~~~~~~-~~~~l~~~ 567 (589)
|||+||++.++++||++++++|+ +++|||+++ .++|+|+|||+++|.+|+|++.++++.+++.++++.+ |++++++|
T Consensus 1 GFi~nRl~~~~~~ea~~l~~egvas~~~ID~~~~~~~G~p~Gpf~l~D~~Gl~~~~~~~~~~~~~~~~~~~~~~~~l~~m 80 (97)
T PF00725_consen 1 GFIVNRLLAALLNEAARLVEEGVASPEDIDRAMRYGLGFPMGPFELADLVGLDVVYHILEYLAAALGDRAFRPSPLLKEM 80 (97)
T ss_dssp TTTHHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHTHSSTHHHHHHHHHHHHHHHHHHHHHHHHCCGGGSS-HHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHhCCCCCccchHHHHhCchHHHHHHHHHHHhcCCCcCCchHHHHHH
Confidence 89999999999999999999996 999999999 7899999999999999999999999999999998844 79999999
Q ss_pred HHcCCCCc---ccceee
Q 007805 568 LKSGRNGN---KGFSFL 581 (589)
Q Consensus 568 v~~g~~G~---~Gfy~y 581 (589)
+++|++|+ +|||+|
T Consensus 81 v~~g~~G~k~g~Gfy~Y 97 (97)
T PF00725_consen 81 VEEGRLGRKSGKGFYDY 97 (97)
T ss_dssp HHTT--BGGGTBSSSBE
T ss_pred HHCCCCcCcCCCcceeC
Confidence 99999999 999998
No 113
>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC. This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.
Probab=99.89 E-value=7.7e-23 Score=221.09 Aligned_cols=119 Identities=16% Similarity=0.175 Sum_probs=113.7
Q ss_pred CeeeEecCCCCCHHHHHHHHHHHHHcCCeeEEEcCCCCcccccccHHHHHHHHHHHHcCC-CHHHHHHHH-HhcCCCCcH
Q 007805 454 PLLEIVRTERTSAQVILDLMTVGKIIKKVPVVVGNCTGFAVNRAFFPYSQSARLLVSLGV-DVFRIDSAI-RSFGLPIGP 531 (589)
Q Consensus 454 ~lveiv~~~~t~~e~~~~~~~l~~~lG~~~v~v~d~~Gfi~nRi~~~~~~Ea~~l~~~Gv-~~~~iD~~~-~~~g~p~Gp 531 (589)
..+||++++.|++++++.+.++++.+||.|++++|.||||+||++.+++|||++++++|+ +++|||.++ .++|||+||
T Consensus 378 ~~vEv~~~~~Ts~e~~~~a~~~~~~~Gk~pi~v~D~pGfi~nRil~~~~nEA~~ll~eGvas~~dID~a~~~g~G~P~GP 457 (503)
T TIGR02279 378 KRIAIAAAAVNPDSATRKAIYYLQQAGKKVLQIADYPGLLILRTVAMLANEAADAVLQGVASAQDIDTAMRLGVNYPYGP 457 (503)
T ss_pred CeEEEeCCCCCCHHHHHHHHHHHHHcCCeEEEeCCcccHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHhCCCCCcCH
Confidence 468899999999999999999999999999999999999999999999999999999998 899999999 899999999
Q ss_pred HHHHHHhchHHHHHHHHHHHHhCCC-CCCchHHHHHHHHcCC
Q 007805 532 FQLLDLAGYGVAAATSKEFDKAFPD-RSFQSPLVDLLLKSGR 572 (589)
Q Consensus 532 f~~~D~~Gld~~~~~~~~l~~~~~~-~~~~~~~l~~~v~~g~ 572 (589)
|+|+|.+|||++++++++|++.+++ ++.|+++|++|+..|.
T Consensus 458 ~~~~D~~Gld~~~~~l~~l~~~~~~~~~~p~~~L~~~v~~g~ 499 (503)
T TIGR02279 458 LAWAAQLGWQRILRVLENLQHHYGEERYRPSSLLRRRALLGS 499 (503)
T ss_pred HHHHHHhCHHHHHHHHHHHHHHcCCCcCCcCHHHHHHHHcCC
Confidence 9999999999999999999999996 4558999999999983
No 114
>cd07014 S49_SppA Signal peptide peptidase A. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV): SppA is an intramembrane enzyme found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Unlike the eukaryotic functional homologs that are proposed to be aspartic proteases, site-directed mutagenesis and sequence analysis have shown these bacterial, archaeal and thylakoid SppAs to be ClpP-like serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain, cleaving peptide bonds in the plane of the lipid bilayer. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad (both residues absolutely conserved within bacteria, chloroplast and mitochondrial signal peptidase family members) and not the usual Ser-His-Asp catalytic triad found in the majority of serine proteases. In addition to the carboxyl-terminal p
Probab=99.79 E-value=7e-19 Score=165.68 Aligned_cols=145 Identities=19% Similarity=0.135 Sum_probs=119.0
Q ss_pred HHHHHHHHHHHHHHhcCCCceEEEEEcCCCCCcCCCCchhhhhccCCCcccccchhHHHHHHHHHHhCCCcEEEEeCCcc
Q 007805 30 IPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLA 109 (589)
Q Consensus 30 ~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kp~iaav~G~a 109 (589)
.-.+.+|.++++++++|+++|+|||++ ||.|.|+.... ...+.+ +.+.+++|||||++||.|
T Consensus 21 ~~~~~~l~~~l~~a~~d~~v~~vvl~~----~~~gg~~~~~~-------------~~~~~i-~~~~~~~kpVia~v~G~a 82 (177)
T cd07014 21 NVSGDTTAAQIRDARLDPKVKAIVLRV----NSPGGSVTASE-------------VIRAEL-AAARAAGKPVVASGGGNA 82 (177)
T ss_pred CcCHHHHHHHHHHHhcCCCceEEEEEe----eCCCcCHHHHH-------------HHHHHH-HHHHhCCCCEEEEECCch
Confidence 346789999999999999999999987 68898876531 122344 567789999999999999
Q ss_pred cchhhHHhhhcCEEEEeCCceEeccccccCCCCChhhhh--------hHhhhcC--HHHHHHHHHcCCCCCHHHHHHcCC
Q 007805 110 LGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQ--------RLPRLVG--LSKAIEMMLLSKSITSEEGWKLGL 179 (589)
Q Consensus 110 ~GgG~~lala~D~~ia~~~a~~~~pe~~~Gl~p~~g~~~--------~l~~~~G--~~~a~~l~ltg~~~~a~~A~~~Gl 179 (589)
.|+|+.|+++||+++++++++|+.+.+..+..+...... .+++..| ....++++..|.+++|++|++.||
T Consensus 83 ~g~g~~la~a~D~i~a~~~a~~~~~G~~~~~~~~~~~l~~~~~~~~~~v~~~rg~~~~~~~~~l~~g~~~~a~~A~~~GL 162 (177)
T cd07014 83 ASGGYWISTPANYIVANPSTLVGSIGIFGVQLADQLSIENGYKRFITLVADNRHSTPEQQIDKIAQGGVWTGQDAKANGL 162 (177)
T ss_pred hHHHHHHHHhCCEEEECCCCeEEEechHhhHHHHHHHHHHHHHHHHHHHHHhCCCCHHHhHHHhcCcCeEeHHHHHHcCC
Confidence 999999999999999999999999988776433222222 4455555 788899999999999999999999
Q ss_pred cceecCchHHHHH
Q 007805 180 IDAVVTSEELLKV 192 (589)
Q Consensus 180 v~~vv~~~~l~~~ 192 (589)
||++.+.+++.+.
T Consensus 163 VD~v~~~~e~~~~ 175 (177)
T cd07014 163 VDSLGSFDDAVAK 175 (177)
T ss_pred cccCCCHHHHHHH
Confidence 9999998887653
No 115
>COG2084 MmsB 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism]
Probab=99.78 E-value=2.1e-18 Score=170.80 Aligned_cols=188 Identities=19% Similarity=0.184 Sum_probs=140.0
Q ss_pred ceEEEEcCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cCCCC
Q 007805 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD 387 (589)
Q Consensus 309 ~kI~IIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~ 387 (589)
.||+|||+|.||.+||.+|.++||+|++||+++++..... .+.| .....+. +++++
T Consensus 1 ~kIafIGLG~MG~pmA~~L~~aG~~v~v~~r~~~ka~~~~----------~~~G-------------a~~a~s~~eaa~~ 57 (286)
T COG2084 1 MKIAFIGLGIMGSPMAANLLKAGHEVTVYNRTPEKAAELL----------AAAG-------------ATVAASPAEAAAE 57 (286)
T ss_pred CeEEEEcCchhhHHHHHHHHHCCCEEEEEeCChhhhhHHH----------HHcC-------------CcccCCHHHHHHh
Confidence 4799999999999999999999999999999999843321 1222 2333444 78899
Q ss_pred CCEEEEeccCChHHHHHHHH--HHHHhCCCCcEEEecCCCCCHH--HHhcccCCCCcEEEecCCCCCCC--------CCe
Q 007805 388 VDMVIEAVIESVPLKQKIFS--ELEKACPPHCILATNTSTIDLN--IVGEKTSSQDRIIGAHFFSPAHV--------MPL 455 (589)
Q Consensus 388 aDlVIeavpe~~~~k~~v~~--~l~~~~~~~~ii~s~ts~~~~~--~~~~~~~~~~r~ig~h~~~p~~~--------~~l 455 (589)
||+||.|||++.++...++. .+.+.++++++++++|+.-+.. ++++.+.. .|.+|.+.|.. +.+
T Consensus 58 aDvVitmv~~~~~V~~V~~g~~g~~~~~~~G~i~IDmSTisp~~a~~~a~~~~~----~G~~~lDAPVsGg~~~A~~GtL 133 (286)
T COG2084 58 ADVVITMLPDDAAVRAVLFGENGLLEGLKPGAIVIDMSTISPETARELAAALAA----KGLEFLDAPVSGGVPGAAAGTL 133 (286)
T ss_pred CCEEEEecCCHHHHHHHHhCccchhhcCCCCCEEEECCCCCHHHHHHHHHHHHh----cCCcEEecCccCCchhhhhCce
Confidence 99999999999888888874 5888899999998766543332 33333322 26677665533 344
Q ss_pred eeEecCCCCCHHHHHHHHHHHHHcCCeeEEEcCC-CCc---ccccccHHH----HHHHHHHHHc-CCCHHHHHHHH-Hhc
Q 007805 456 LEIVRTERTSAQVILDLMTVGKIIKKVPVVVGNC-TGF---AVNRAFFPY----SQSARLLVSL-GVDVFRIDSAI-RSF 525 (589)
Q Consensus 456 veiv~~~~t~~e~~~~~~~l~~~lG~~~v~v~d~-~Gf---i~nRi~~~~----~~Ea~~l~~~-Gv~~~~iD~~~-~~~ 525 (589)
..++.+ +++.+++++++++.+|++++++++. .|. ++|.++... +.||+.+.++ |++++.+..++ .+.
T Consensus 134 timvGG---~~~~f~r~~pvl~~~g~~i~~~G~~G~G~~~Kl~nn~l~~~~~~a~aEAl~la~k~Gld~~~~~~vi~~~~ 210 (286)
T COG2084 134 TIMVGG---DAEAFERAKPVLEAMGKNIVHVGPVGAGQAAKLANNILLAGNIAALAEALALAEKAGLDPDVVLEVISGGA 210 (286)
T ss_pred EEEeCC---CHHHHHHHHHHHHHhcCceEEECCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhccc
Confidence 445555 8999999999999999999999765 333 447765443 3499999987 99999999999 544
Q ss_pred C
Q 007805 526 G 526 (589)
Q Consensus 526 g 526 (589)
+
T Consensus 211 ~ 211 (286)
T COG2084 211 A 211 (286)
T ss_pred c
Confidence 3
No 116
>cd07020 Clp_protease_NfeD_1 Nodulation formation efficiency D (NfeD) is a membrane-bound ClpP-class protease. Nodulation formation efficiency D (NfeD; stomatin operon partner protein, STOPP; DUF107) is a member of membrane-anchored ClpP-class proteases. Currently, more than 300 NfeD homologs have been identified - all of which are bacterial or archaeal in origin. Majority of these genomes have been shown to possess operons containing a homologous NfeD/stomatin gene pair, causing NfeD to be previously named STOPP (stomatin operon partner protein). NfeD homologs can be divided into two groups: long and short forms. Long-form homologs have a putative ClpP-class serine protease domain while the short form homologs do not. Downstream from the ClpP-class domain is the so-called NfeD or DUF107 domain. N-terminal region of the NfeD homolog PH1510 (1510-N or PH1510-N) from Pyrococcus horikoshii has been shown to possess serine protease activity and has a Ser-Lys catalytic dyad, preferentially c
Probab=99.77 E-value=5.2e-18 Score=160.90 Aligned_cols=150 Identities=25% Similarity=0.265 Sum_probs=118.6
Q ss_pred EEEEeCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCCcCCCCchhhhhccCCCcccccchhHHHHHHHHHH
Q 007805 16 AIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIE 95 (589)
Q Consensus 16 ~~i~l~~p~~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 95 (589)
++|.++. .++..+...+.+.++.+++++ ++.|+|.=. |.|+++.. ...++ +.|.
T Consensus 2 ~vv~i~g----~I~~~~~~~l~~~l~~a~~~~-~~~vvl~In----SpGG~v~~----------------~~~i~-~~l~ 55 (187)
T cd07020 2 YVLEING----AITPATADYLERAIDQAEEGG-ADALIIELD----TPGGLLDS----------------TREIV-QAIL 55 (187)
T ss_pred EEEEEee----EEChHHHHHHHHHHHHHHhCC-CCEEEEEEE----CCCCCHHH----------------HHHHH-HHHH
Confidence 4566653 366778889999999998765 788888511 22333322 12445 5678
Q ss_pred hCCCcEEEEeC---CcccchhhHHhhhcCEEEEeCCceEeccccccCCCCCh--------------hhhhhHhhhcCH--
Q 007805 96 DCKKPIVAAVE---GLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGF--------------GGTQRLPRLVGL-- 156 (589)
Q Consensus 96 ~~~kp~iaav~---G~a~GgG~~lala~D~~ia~~~a~~~~pe~~~Gl~p~~--------------g~~~~l~~~~G~-- 156 (589)
.+|||||++|+ |.|.|||+.|+++||+++++++++|+.+++..+..+.. +....+++..|.
T Consensus 56 ~~~kPvia~v~~~~G~AasgG~~iala~D~iva~p~a~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~G~~~ 135 (187)
T cd07020 56 ASPVPVVVYVYPSGARAASAGTYILLAAHIAAMAPGTNIGAAHPVAIGGGGGSDPVMEKKILNDAVAYIRSLAELRGRNA 135 (187)
T ss_pred hCCCCEEEEEecCCCCchhHHHHHHHhCCceeECCCCcEEeccccccCCCCcchHHHHHHHHHHHHHHHHHHHHHcCCCH
Confidence 89999999999 99999999999999999999999999999985544432 245578899998
Q ss_pred HHHHHHHHcCCCCCHHHHHHcCCcceecCch-HHHH
Q 007805 157 SKAIEMMLLSKSITSEEGWKLGLIDAVVTSE-ELLK 191 (589)
Q Consensus 157 ~~a~~l~ltg~~~~a~~A~~~Glv~~vv~~~-~l~~ 191 (589)
.++.+++++|+.++++||+++||||++++++ ++..
T Consensus 136 ~~a~~~l~~g~~~~a~eA~~~Glvd~v~~~~~~~~~ 171 (187)
T cd07020 136 EWAEKAVRESLSLTAEEALKLGVIDLIAADLNELLK 171 (187)
T ss_pred HHHHHHHHcCCeecHHHHHHcCCcccccCCHHHHHH
Confidence 6899999999999999999999999999886 5654
No 117
>TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase. This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism.
Probab=99.73 E-value=2.2e-17 Score=168.44 Aligned_cols=187 Identities=18% Similarity=0.228 Sum_probs=134.6
Q ss_pred eEEEEcCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cCCCCC
Q 007805 310 KVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKDV 388 (589)
Q Consensus 310 kI~IIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~a 388 (589)
||+|||+|.||.+||..|+++|++|++||+++++.+.+. +.|. ...++. +.+++|
T Consensus 1 ~IgvIG~G~mG~~iA~~l~~~G~~V~~~dr~~~~~~~~~-----------~~g~-------------~~~~~~~~~~~~a 56 (291)
T TIGR01505 1 KVGFIGLGIMGSPMSINLAKAGYQLHVTTIGPEVADELL-----------AAGA-------------VTAETARQVTEQA 56 (291)
T ss_pred CEEEEEecHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHH-----------HCCC-------------cccCCHHHHHhcC
Confidence 599999999999999999999999999999998876642 2221 112333 668899
Q ss_pred CEEEEeccCChHHHHHHHH--HHHHhCCCCcEEEecCCCCCHH--HHhcccCCCCcEEEecCCCCCCC-------CCeee
Q 007805 389 DMVIEAVIESVPLKQKIFS--ELEKACPPHCILATNTSTIDLN--IVGEKTSSQDRIIGAHFFSPAHV-------MPLLE 457 (589)
Q Consensus 389 DlVIeavpe~~~~k~~v~~--~l~~~~~~~~ii~s~ts~~~~~--~~~~~~~~~~r~ig~h~~~p~~~-------~~lve 457 (589)
|+||+|+|++..++..++. .+.+.++++++|++.++..+.+ ++.+.+... +.||.++|.. ...+.
T Consensus 57 Divi~~vp~~~~~~~v~~~~~~~~~~~~~g~iivd~st~~~~~~~~l~~~l~~~----g~~~~~~pv~g~~~~a~~g~l~ 132 (291)
T TIGR01505 57 DVIFTMVPDSPQVEEVAFGENGIIEGAKPGKTLVDMSSISPIESKRFAKAVKEK----GIDYLDAPVSGGEIGAIEGTLS 132 (291)
T ss_pred CEEEEecCCHHHHHHHHcCcchHhhcCCCCCEEEECCCCCHHHHHHHHHHHHHc----CCCEEecCCCCCHHHHhcCCEE
Confidence 9999999988777766553 3667788888887544433322 344444322 3444333211 12234
Q ss_pred EecCCCCCHHHHHHHHHHHHHcCCeeEEEcC-CCC---cccccccHHH----HHHHHHHHHc-CCCHHHHHHHH-HhcC
Q 007805 458 IVRTERTSAQVILDLMTVGKIIKKVPVVVGN-CTG---FAVNRAFFPY----SQSARLLVSL-GVDVFRIDSAI-RSFG 526 (589)
Q Consensus 458 iv~~~~t~~e~~~~~~~l~~~lG~~~v~v~d-~~G---fi~nRi~~~~----~~Ea~~l~~~-Gv~~~~iD~~~-~~~g 526 (589)
++.+ .++++++.++++++.+|++++++++ .+| .++|+++.+. ++|++.+.++ |++++++..++ .+.+
T Consensus 133 i~~g--g~~~~~~~~~~ll~~lg~~~~~~g~~g~a~~~Kl~~n~~~~~~~~~~~Ea~~l~~~~Gid~~~~~~~l~~~~~ 209 (291)
T TIGR01505 133 IMVG--GDQAVFDRVKPLFEALGKNIVLVGGNGDGQTCKVANQIIVALNIEAVSEALVFASKAGVDPVRVRQALRGGLA 209 (291)
T ss_pred EEec--CCHHHHHHHHHHHHHhcCCeEEeCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhcCcc
Confidence 4444 2789999999999999999999965 556 4778887765 7899998877 89999999999 4544
No 118
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=99.72 E-value=3.1e-16 Score=158.70 Aligned_cols=153 Identities=20% Similarity=0.217 Sum_probs=119.1
Q ss_pred eEEEEcCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCccCCCCCC
Q 007805 310 KVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKDVD 389 (589)
Q Consensus 310 kI~IIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~aD 389 (589)
||+|||+|+||++||..|.++|++|++||++++.++.+. +.|.++ ...++.+.+++||
T Consensus 2 ~I~IIG~G~mG~sla~~L~~~g~~V~~~d~~~~~~~~a~-----------~~g~~~-----------~~~~~~~~~~~aD 59 (279)
T PRK07417 2 KIGIVGLGLIGGSLGLDLRSLGHTVYGVSRRESTCERAI-----------ERGLVD-----------EASTDLSLLKDCD 59 (279)
T ss_pred eEEEEeecHHHHHHHHHHHHCCCEEEEEECCHHHHHHHH-----------HCCCcc-----------cccCCHhHhcCCC
Confidence 799999999999999999999999999999998877752 223211 1233446678999
Q ss_pred EEEEeccCChHHHHHHHHHHHHhCCCCcEEEecCCCCCHHHHhcccCCCCcEEEecCCCCCC------------CCCeee
Q 007805 390 MVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAH------------VMPLLE 457 (589)
Q Consensus 390 lVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~~~~~~~~~~~r~ig~h~~~p~~------------~~~lve 457 (589)
+||+|+| .....++++++.++++++++|++ ++++....+........+|+++||+.++. ......
T Consensus 60 lVilavp--~~~~~~~~~~l~~~l~~~~ii~d-~~Svk~~~~~~~~~~~~~~v~~HPm~G~~~~g~~~a~~~lf~g~~~~ 136 (279)
T PRK07417 60 LVILALP--IGLLLPPSEQLIPALPPEAIVTD-VGSVKAPIVEAWEKLHPRFVGSHPMAGTAESGVEAGQRGLFKNRPWV 136 (279)
T ss_pred EEEEcCC--HHHHHHHHHHHHHhCCCCcEEEe-CcchHHHHHHHHHHhhCCceeeCCcCCCCcchHHHhhHHHhCCCcEE
Confidence 9999999 44456788999999999988754 44555555554444455799999965442 345566
Q ss_pred EecCCCCCHHHHHHHHHHHHHcCCeeEEEc
Q 007805 458 IVRTERTSAQVILDLMTVGKIIKKVPVVVG 487 (589)
Q Consensus 458 iv~~~~t~~e~~~~~~~l~~~lG~~~v~v~ 487 (589)
+++++.++++.++.+.++++.+|++++++.
T Consensus 137 l~p~~~~~~~~~~~v~~l~~~lG~~~v~~~ 166 (279)
T PRK07417 137 LTPTENTDLNALAIVEELAVSLGSKIYTAD 166 (279)
T ss_pred EccCCCCCHHHHHHHHHHHHHcCCEEEEcC
Confidence 889999999999999999999999999884
No 119
>PRK11559 garR tartronate semialdehyde reductase; Provisional
Probab=99.71 E-value=9.8e-17 Score=164.11 Aligned_cols=189 Identities=17% Similarity=0.211 Sum_probs=136.3
Q ss_pred cceEEEEcCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cCCC
Q 007805 308 VRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFK 386 (589)
Q Consensus 308 ~~kI~IIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~ 386 (589)
+++|+|||+|.||.++|..+++.|++|++||+++++.+... +.| +..++++ +.++
T Consensus 2 ~~~IgviG~G~mG~~~a~~l~~~g~~v~~~d~~~~~~~~~~-----------~~g-------------~~~~~~~~e~~~ 57 (296)
T PRK11559 2 TMKVGFIGLGIMGKPMSKNLLKAGYSLVVYDRNPEAVAEVI-----------AAG-------------AETASTAKAVAE 57 (296)
T ss_pred CceEEEEccCHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHH-----------HCC-------------CeecCCHHHHHh
Confidence 45899999999999999999999999999999998866532 112 2233444 5678
Q ss_pred CCCEEEEeccCChHHHHHHH--HHHHHhCCCCcEEEecCCCCCHH--HHhcccCCCCcEEEecCCCCCCCC-------Ce
Q 007805 387 DVDMVIEAVIESVPLKQKIF--SELEKACPPHCILATNTSTIDLN--IVGEKTSSQDRIIGAHFFSPAHVM-------PL 455 (589)
Q Consensus 387 ~aDlVIeavpe~~~~k~~v~--~~l~~~~~~~~ii~s~ts~~~~~--~~~~~~~~~~r~ig~h~~~p~~~~-------~l 455 (589)
+||+||+|+|++..++..++ ..+.+.++++++|++.++..+.. ++.+.+... +.||.++|..+ ..
T Consensus 58 ~~d~vi~~vp~~~~~~~v~~~~~~~~~~~~~g~iiid~st~~~~~~~~l~~~~~~~----g~~~~d~pv~g~~~~a~~g~ 133 (296)
T PRK11559 58 QCDVIITMLPNSPHVKEVALGENGIIEGAKPGTVVIDMSSIAPLASREIAAALKAK----GIEMLDAPVSGGEPKAIDGT 133 (296)
T ss_pred cCCEEEEeCCCHHHHHHHHcCcchHhhcCCCCcEEEECCCCCHHHHHHHHHHHHHc----CCcEEEcCCCCCHHHHhhCc
Confidence 99999999998887766654 34777888999887544443322 344443321 45665544322 22
Q ss_pred eeEecCCCCCHHHHHHHHHHHHHcCCeeEEEcC-CCCcc---cccccHH----HHHHHHHHHHc-CCCHHHHHHHH-Hhc
Q 007805 456 LEIVRTERTSAQVILDLMTVGKIIKKVPVVVGN-CTGFA---VNRAFFP----YSQSARLLVSL-GVDVFRIDSAI-RSF 525 (589)
Q Consensus 456 veiv~~~~t~~e~~~~~~~l~~~lG~~~v~v~d-~~Gfi---~nRi~~~----~~~Ea~~l~~~-Gv~~~~iD~~~-~~~ 525 (589)
+.++.+ .+++.++.+.++++.+|+.++++++ .+|++ +|+++.+ .++|++.++++ |+++++++.++ .++
T Consensus 134 l~i~~g--g~~~~~~~~~~~l~~~~~~~~~~g~~g~a~~~Kl~~n~~~~~~~~~~~Ea~~l~~~~Gi~~~~~~~~l~~~~ 211 (296)
T PRK11559 134 LSVMVG--GDKAIFDKYYDLMKAMAGSVVHTGDIGAGNVTKLANQVIVALNIAAMSEALVLATKAGVNPDLVYQAIRGGL 211 (296)
T ss_pred EEEEEC--CCHHHHHHHHHHHHHhcCCeEEeCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhcCc
Confidence 344444 2689999999999999999999964 56775 6776554 47899999876 89999999998 544
Q ss_pred C
Q 007805 526 G 526 (589)
Q Consensus 526 g 526 (589)
+
T Consensus 212 ~ 212 (296)
T PRK11559 212 A 212 (296)
T ss_pred c
Confidence 4
No 120
>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional
Probab=99.66 E-value=1.5e-15 Score=159.49 Aligned_cols=171 Identities=20% Similarity=0.190 Sum_probs=125.3
Q ss_pred ccceEEEEc-CCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCccCC
Q 007805 307 GVRKVAVIG-GGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEF 385 (589)
Q Consensus 307 ~~~kI~IIG-~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~ 385 (589)
.+++|+||| +|.||+++|..|..+|++|++||+++.. . . .+.+
T Consensus 97 ~~~~I~IiGG~GlmG~slA~~l~~~G~~V~~~d~~~~~--~----------------------~------------~~~~ 140 (374)
T PRK11199 97 DLRPVVIVGGKGQLGRLFAKMLTLSGYQVRILEQDDWD--R----------------------A------------EDIL 140 (374)
T ss_pred ccceEEEEcCCChhhHHHHHHHHHCCCeEEEeCCCcch--h----------------------H------------HHHH
Confidence 578999999 9999999999999999999999986320 0 0 0335
Q ss_pred CCCCEEEEeccCChHHHHHHHHHHHHhCCCCcEEEecCCC--CCHHHHhcccCCCCcEEEecCCCCCCCCCeee--EecC
Q 007805 386 KDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTST--IDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLE--IVRT 461 (589)
Q Consensus 386 ~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~--~~~~~~~~~~~~~~r~ig~h~~~p~~~~~lve--iv~~ 461 (589)
++||+||+|+|++ ...++++++.+ +++++||++++|. .++..+..... .+|+|.||+.++....+.. ++..
T Consensus 141 ~~aDlVilavP~~--~~~~~~~~l~~-l~~~~iv~Dv~SvK~~~~~~~~~~~~--~~fvg~HPm~G~~~~~~~~~~vv~~ 215 (374)
T PRK11199 141 ADAGMVIVSVPIH--LTEEVIARLPP-LPEDCILVDLTSVKNAPLQAMLAAHS--GPVLGLHPMFGPDVGSLAKQVVVVC 215 (374)
T ss_pred hcCCEEEEeCcHH--HHHHHHHHHhC-CCCCcEEEECCCccHHHHHHHHHhCC--CCEEeeCCCCCCCCcccCCCEEEEc
Confidence 7899999999955 46788899988 8999999998875 34556655443 3699999998886554433 5556
Q ss_pred CCCCHHHHHHHHHHHHHcCCeeEEEc-CCCCccccccc--HHH--HHHHHHHHHcCCCHHHH
Q 007805 462 ERTSAQVILDLMTVGKIIKKVPVVVG-NCTGFAVNRAF--FPY--SQSARLLVSLGVDVFRI 518 (589)
Q Consensus 462 ~~t~~e~~~~~~~l~~~lG~~~v~v~-d~~Gfi~nRi~--~~~--~~Ea~~l~~~Gv~~~~i 518 (589)
+.++++.++.+.++++.+|++++.+. +.+..++..+. -.+ +.++..+.+.+.+.+++
T Consensus 216 ~~~~~~~~~~~~~l~~~lG~~v~~~~~~~HD~~~a~vshLpH~~a~al~~~l~~~~~~~~~~ 277 (374)
T PRK11199 216 DGRQPEAYQWLLEQIQVWGARLHRISAVEHDQNMAFIQALRHFATFAYGLHLAKENVDLEQL 277 (374)
T ss_pred CCCCchHHHHHHHHHHHCCCEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHH
Confidence 67888999999999999999999983 34443333322 112 22455555666665554
No 121
>PLN02688 pyrroline-5-carboxylate reductase
Probab=99.64 E-value=6.5e-15 Score=148.29 Aligned_cols=186 Identities=19% Similarity=0.126 Sum_probs=137.8
Q ss_pred ceEEEEcCCCCcHHHHHHHHhCCC----eEEEE-eCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-
Q 007805 309 RKVAVIGGGLMGSGIATAHILNNI----YVVLK-EVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY- 382 (589)
Q Consensus 309 ~kI~IIG~G~mG~~iA~~l~~~G~----~V~~~-d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~- 382 (589)
+||+|||+|+||.+|+..|.++|+ +|++| |+++++.+.+. +.| +...++.
T Consensus 1 ~kI~~IG~G~mG~a~a~~L~~~g~~~~~~i~v~~~r~~~~~~~~~-----------~~g-------------~~~~~~~~ 56 (266)
T PLN02688 1 FRVGFIGAGKMAEAIARGLVASGVVPPSRISTADDSNPARRDVFQ-----------SLG-------------VKTAASNT 56 (266)
T ss_pred CeEEEECCcHHHHHHHHHHHHCCCCCcceEEEEeCCCHHHHHHHH-----------HcC-------------CEEeCChH
Confidence 469999999999999999999998 89999 99988765431 112 2333444
Q ss_pred cCCCCCCEEEEeccCChHHHHHHHHHHHHhCCCCcEEEecCCCCCHHHHhcccCCCCcEEEecCCCCCCCCCeee-EecC
Q 007805 383 SEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLE-IVRT 461 (589)
Q Consensus 383 ~~~~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~~~~~~~~~~~r~ig~h~~~p~~~~~lve-iv~~ 461 (589)
+.+++||+||+|++ ++...+++.++.+.++++++|+|.+++++.+.+....+.. ++++.+|..|......+. ++.+
T Consensus 57 e~~~~aDvVil~v~--~~~~~~vl~~l~~~~~~~~~iIs~~~g~~~~~l~~~~~~~-~vvr~mP~~~~~~~~~~~~l~~~ 133 (266)
T PLN02688 57 EVVKSSDVIILAVK--PQVVKDVLTELRPLLSKDKLLVSVAAGITLADLQEWAGGR-RVVRVMPNTPCLVGEAASVMSLG 133 (266)
T ss_pred HHHhcCCEEEEEEC--cHHHHHHHHHHHhhcCCCCEEEEecCCCcHHHHHHHcCCC-CEEEECCCcHHHHhCceEEEEeC
Confidence 56789999999996 5567888888988888889888998999999888766544 788889988877666555 4567
Q ss_pred CCCCHHHHHHHHHHHHHcCCeeEEEcCC--C---Ccccc-cccHHHHHHHH--HHHHcCCCHHHHHHHH
Q 007805 462 ERTSAQVILDLMTVGKIIKKVPVVVGNC--T---GFAVN-RAFFPYSQSAR--LLVSLGVDVFRIDSAI 522 (589)
Q Consensus 462 ~~t~~e~~~~~~~l~~~lG~~~v~v~d~--~---Gfi~n-Ri~~~~~~Ea~--~l~~~Gv~~~~iD~~~ 522 (589)
..++++..+.++++++.+|. ++++.+. . |.... ..+..++.|++ .....|+++++.-.++
T Consensus 134 ~~~~~~~~~~v~~l~~~~G~-~~~~~e~~~d~~~~~~g~g~a~~~~~~~a~~ea~~~~Gl~~~~a~~~~ 201 (266)
T PLN02688 134 PAATADDRDLVATLFGAVGK-IWVVDEKLLDAVTGLSGSGPAYIFLAIEALADGGVAAGLPRDVALSLA 201 (266)
T ss_pred CCCCHHHHHHHHHHHHhCCC-EEEeCHHHcchhHhhhcCHHHHHHHHHHHHHHHHHHcCCCHHHHHHHH
Confidence 78899999999999999999 7776431 0 10111 11233334443 2445699999887776
No 122
>PRK06545 prephenate dehydrogenase; Validated
Probab=99.64 E-value=8.1e-15 Score=153.52 Aligned_cols=207 Identities=16% Similarity=0.103 Sum_probs=140.3
Q ss_pred ceEEEEcCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cCCCC
Q 007805 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD 387 (589)
Q Consensus 309 ~kI~IIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~ 387 (589)
++|+|||+|+||++||..|.++|++|.+|+++++..+.... ...+..+ ..++++ +.+++
T Consensus 1 ~~I~iIG~GliG~siA~~L~~~G~~v~i~~~~~~~~~~~~a---------~~~~~~~-----------~~~~~~~~~~~~ 60 (359)
T PRK06545 1 RTVLIVGLGLIGGSLALAIKAAGPDVFIIGYDPSAAQLARA---------LGFGVID-----------ELAADLQRAAAE 60 (359)
T ss_pred CeEEEEEeCHHHHHHHHHHHhcCCCeEEEEeCCCHHHHHHH---------hcCCCCc-----------ccccCHHHHhcC
Confidence 47999999999999999999999999999998876443211 1112111 122344 56789
Q ss_pred CCEEEEeccCChHHHHHHHHHHHH-hCCCCcEEEecCCC--CCHHHHhcccCCCCcEEEecCCCCC------------CC
Q 007805 388 VDMVIEAVIESVPLKQKIFSELEK-ACPPHCILATNTST--IDLNIVGEKTSSQDRIIGAHFFSPA------------HV 452 (589)
Q Consensus 388 aDlVIeavpe~~~~k~~v~~~l~~-~~~~~~ii~s~ts~--~~~~~~~~~~~~~~r~ig~h~~~p~------------~~ 452 (589)
||+||+|+|. ....+++.++.+ .++++++|++.+|. ..++.+........+|++.||+... ..
T Consensus 61 aDlVilavP~--~~~~~vl~~l~~~~l~~~~ivtDv~SvK~~i~~~~~~~~~~~~~~ig~HPMaG~e~sG~~aa~~~lf~ 138 (359)
T PRK06545 61 ADLIVLAVPV--DATAALLAELADLELKPGVIVTDVGSVKGAILAEAEALLGDLIRFVGGHPMAGSHKSGVAAARADLFE 138 (359)
T ss_pred CCEEEEeCCH--HHHHHHHHHHhhcCCCCCcEEEeCccccHHHHHHHHHhcCCCCeEEeeCCcCcCchhhHHHhcHHHHC
Confidence 9999999994 567899999987 47888888765554 2334455544566789999986543 12
Q ss_pred CCeeeEecCCCCCHHHHHHHHHHHHHcCCeeEEE-cCCCCccccccc--HHHHHHHHHHHHcCCCHHHHHHHHHhcCCC-
Q 007805 453 MPLLEIVRTERTSAQVILDLMTVGKIIKKVPVVV-GNCTGFAVNRAF--FPYSQSARLLVSLGVDVFRIDSAIRSFGLP- 528 (589)
Q Consensus 453 ~~lveiv~~~~t~~e~~~~~~~l~~~lG~~~v~v-~d~~Gfi~nRi~--~~~~~Ea~~l~~~Gv~~~~iD~~~~~~g~p- 528 (589)
+....+++++.++++.++.+.++++.+|++++++ .+.+..++..+. -.++.+++ ....+.+.++.-. +.+-||.
T Consensus 139 g~~~il~~~~~~~~~~~~~v~~l~~~lGa~~v~~~~~~HD~~~A~vshlPh~ia~al-~~~~~~~~~~~~~-la~~gfrd 216 (359)
T PRK06545 139 NAPWVLTPDDHTDPDAVAELKDLLSGTGAKFVVLDAEEHDRAVALVSHLPHILASSL-AARLAGEHPLALR-LAAGGFRD 216 (359)
T ss_pred CCcEEEecCCCCCHHHHHHHHHHHHHcCCEEEECCHHHHhHHHhHhccHHHHHHHHH-HHhhccCchHHHh-hhcccccC
Confidence 3445588888999999999999999999999988 556666666653 23444544 1222332222211 2333442
Q ss_pred ------CcHHHHHHHhc
Q 007805 529 ------IGPFQLLDLAG 539 (589)
Q Consensus 529 ------~Gpf~~~D~~G 539 (589)
.-|-.|.|.+-
T Consensus 217 ~tRia~~~p~~w~di~~ 233 (359)
T PRK06545 217 ITRIASSDPGMWRDILE 233 (359)
T ss_pred CccccCCCHHHHHHHHH
Confidence 27777888765
No 123
>KOG0409 consensus Predicted dehydrogenase [General function prediction only]
Probab=99.64 E-value=1.7e-14 Score=140.12 Aligned_cols=194 Identities=19% Similarity=0.165 Sum_probs=134.0
Q ss_pred CccceEEEEcCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cC
Q 007805 306 RGVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SE 384 (589)
Q Consensus 306 ~~~~kI~IIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~ 384 (589)
++.++||+||+|+||.+|+.+|.++||.|++|||+.++.+.. .+.|. +...++ |.
T Consensus 33 ~s~~~iGFIGLG~MG~~M~~nLik~G~kVtV~dr~~~k~~~f-----------~~~Ga-------------~v~~sPaeV 88 (327)
T KOG0409|consen 33 PSKTRIGFIGLGNMGSAMVSNLIKAGYKVTVYDRTKDKCKEF-----------QEAGA-------------RVANSPAEV 88 (327)
T ss_pred cccceeeEEeeccchHHHHHHHHHcCCEEEEEeCcHHHHHHH-----------HHhch-------------hhhCCHHHH
Confidence 357899999999999999999999999999999999987764 33331 223344 77
Q ss_pred CCCCCEEEEeccCChHHHHHHHHH--HHHhCCCCcEEEecCCCCCH---HHHhcccC-CCCcEEEecC---CCCCCCCCe
Q 007805 385 FKDVDMVIEAVIESVPLKQKIFSE--LEKACPPHCILATNTSTIDL---NIVGEKTS-SQDRIIGAHF---FSPAHVMPL 455 (589)
Q Consensus 385 ~~~aDlVIeavpe~~~~k~~v~~~--l~~~~~~~~ii~s~ts~~~~---~~~~~~~~-~~~r~ig~h~---~~p~~~~~l 455 (589)
+++||+||.+||+..+++..++.. +...++++...+..+|++.+ .++++... +..+|+-..- ..++..+.|
T Consensus 89 ae~sDvvitmv~~~~~v~~v~~g~~Gvl~g~~~g~~~~vDmSTidp~~s~ei~~~i~~~~~~~vDAPVSGg~~~A~~G~L 168 (327)
T KOG0409|consen 89 AEDSDVVITMVPNPKDVKDVLLGKSGVLSGIRPGKKATVDMSTIDPDTSLEIAKAISNKGGRFVDAPVSGGVKGAEEGTL 168 (327)
T ss_pred HhhcCEEEEEcCChHhhHHHhcCCCcceeeccCCCceEEeccccCHHHHHHHHHHHHhCCCeEEeccccCCchhhhcCeE
Confidence 899999999999888888887765 33434454433222333333 35555443 3334443322 122234445
Q ss_pred eeEecCCCCCHHHHHHHHHHHHHcCCeeEEEcCC-CCc---ccccccHHH----HHHHHHHHHc-CCCHHHHHHHH-Hhc
Q 007805 456 LEIVRTERTSAQVILDLMTVGKIIKKVPVVVGNC-TGF---AVNRAFFPY----SQSARLLVSL-GVDVFRIDSAI-RSF 525 (589)
Q Consensus 456 veiv~~~~t~~e~~~~~~~l~~~lG~~~v~v~d~-~Gf---i~nRi~~~~----~~Ea~~l~~~-Gv~~~~iD~~~-~~~ 525 (589)
..++.| +++.++++.++++.+||++++++.. -|. +.|.++.+. +.|++.+.+. |+++..+-.++ .+-
T Consensus 169 timagG---de~~~~~~~~~~~~mGk~~~~~G~~GnG~~~Kl~nnm~~g~~M~g~aEal~la~r~GLd~~~l~eiln~G~ 245 (327)
T KOG0409|consen 169 TIMAGG---DEALFEAASPVFKLMGKNVVFLGGVGNGQAAKLCNNMLLGSSMVGLAEALALADRLGLDAKKLLEILNTGR 245 (327)
T ss_pred EEEecC---cHHHHHHHHHHHHHhcceEEEecccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhcCC
Confidence 555554 8999999999999999999999653 332 446665443 3499988876 99999888887 543
Q ss_pred C
Q 007805 526 G 526 (589)
Q Consensus 526 g 526 (589)
.
T Consensus 246 ~ 246 (327)
T KOG0409|consen 246 C 246 (327)
T ss_pred c
Confidence 3
No 124
>cd07019 S49_SppA_1 Signal peptide peptidase A (SppA), a serine protease, has catalytic Ser-Lys dyad. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV): SppAs in this subfamily are found in all three domains of life and are involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Site-directed mutagenesis and sequence analysis have shown these bacterial, archaeal and thylakoid SppAs to be serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad (both residues absolutely conserved within bacteria, chloroplast and mitochondrial signal peptidase family members) and not the usual Ser-His-Asp catalytic triad found in the majority of serine proteases. In addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members, the E. coli SppA contains an amino-te
Probab=99.63 E-value=1e-15 Score=148.02 Aligned_cols=159 Identities=18% Similarity=0.173 Sum_probs=114.5
Q ss_pred cEEEEEeCCC--C-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCCcCCCCchhhhhccCCCcccccchhHHHHH
Q 007805 14 GVAIITLINP--P-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELV 90 (589)
Q Consensus 14 ~v~~i~l~~p--~-~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~ 90 (589)
+|++|.++.| + .+..+...+.+|.++|+.+..||++|+|||+ .||+|+|+..+.. ....+
T Consensus 1 ~i~v~~~~g~i~~~~~~~~~~~~~~l~~~l~~a~~d~~v~~ivL~----~~s~Gg~~~~~~~-------------~~~~l 63 (211)
T cd07019 1 SIGVVFANGAIVDGEETQGNVGGDTTAAQIRDARLDPKVKAIVLR----VNSPGGSVTASEV-------------IRAEL 63 (211)
T ss_pred CEEEEEEEEEEeCCCCCCCccCHHHHHHHHHHHhhCCCceEEEEE----EcCCCcCHHHHHH-------------HHHHH
Confidence 4778888766 3 3444566789999999999999999999997 7999999977532 12334
Q ss_pred HHHHHhCCCcEEEEeCCcccchhhHHhhhcCEEEEeCCceEeccc------------cccCCCC---Chhhh--------
Q 007805 91 VNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPE------------LTLGVIP---GFGGT-------- 147 (589)
Q Consensus 91 ~~~l~~~~kp~iaav~G~a~GgG~~lala~D~~ia~~~a~~~~pe------------~~~Gl~p---~~g~~-------- 147 (589)
+.++.++||+||+++|.|.|+|+.|+++||++++++++.|+..- -++|+-+ -.++.
T Consensus 64 -~~~~~~~kpVia~v~g~a~s~gy~la~~aD~i~a~~~a~~gsiGv~~~~~~~~~~l~k~Gv~~~~~~~~g~~k~~~~~~ 142 (211)
T cd07019 64 -AAARAAGKPVVVSAGGAAASGGYWISTPANYIVANPSTLTGSIGIFGVITTVENSLDSIGVHTDGVSTSPLADVSITRA 142 (211)
T ss_pred -HHHHhCCCCEEEEECCeehhHHHHHHHhCCEEEEcCCCEEEEeEEEEEcCCHHHHHHhcCCceEEEEecCcccCCCCCC
Confidence 56788999999999999999999999999999999999886322 1122211 01000
Q ss_pred ------hhH-----------------hhhcCHHHHHHHHHcCCCCCHHHHHHcCCcceecCchHHHH
Q 007805 148 ------QRL-----------------PRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLK 191 (589)
Q Consensus 148 ------~~l-----------------~~~~G~~~a~~l~ltg~~~~a~~A~~~Glv~~vv~~~~l~~ 191 (589)
..+ .|.+. ....+-+..|..+++++|++.||||++-..++..+
T Consensus 143 ~s~e~r~~~~~~ld~~~~~f~~~Va~~R~~~-~~~l~~~~~~~~~~~~~A~~~GLvD~i~~~~~~~~ 208 (211)
T cd07019 143 LPPEAQLGLQLSIENGYKRFITLVADARHST-PEQIDKIAQGHVWTGQDAKANGLVDSLGDFDDAVA 208 (211)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHhhCCCC-HHHHHHhcCCcEEeHHHHHHcCCcccCCCHHHHHH
Confidence 000 01111 11233355788999999999999999987766544
No 125
>PRK12491 pyrroline-5-carboxylate reductase; Reviewed
Probab=99.61 E-value=2.7e-14 Score=143.39 Aligned_cols=188 Identities=15% Similarity=0.158 Sum_probs=143.5
Q ss_pred ceEEEEcCCCCcHHHHHHHHhCCC----eEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-c
Q 007805 309 RKVAVIGGGLMGSGIATAHILNNI----YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-S 383 (589)
Q Consensus 309 ~kI~IIG~G~mG~~iA~~l~~~G~----~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~ 383 (589)
+||+|||+|+||.+|+..|.++|+ +|+++|+++++++.+.++ .| +..+++. +
T Consensus 3 ~~IgfIG~G~MG~aia~~L~~~g~~~~~~I~v~~r~~~~~~~l~~~----------~g-------------~~~~~~~~e 59 (272)
T PRK12491 3 KQIGFIGCGNMGIAMIGGMINKNIVSPDQIICSDLNVSNLKNASDK----------YG-------------ITITTNNNE 59 (272)
T ss_pred CeEEEECccHHHHHHHHHHHHCCCCCCceEEEECCCHHHHHHHHHh----------cC-------------cEEeCCcHH
Confidence 379999999999999999999885 699999999887664221 11 2233344 5
Q ss_pred CCCCCCEEEEeccCChHHHHHHHHHHHHhCCCCcEEEecCCCCCHHHHhcccCCCCcEEEecCCCCCCCCCeeeEe-cCC
Q 007805 384 EFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIV-RTE 462 (589)
Q Consensus 384 ~~~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~~~~~~~~~~~r~ig~h~~~p~~~~~lveiv-~~~ 462 (589)
.+++||+||.|+| +....++++++.++++++++|+|...+++++.+...++...+++..+|+.|...+..+..+ +++
T Consensus 60 ~~~~aDiIiLavk--P~~~~~vl~~l~~~~~~~~lvISi~AGi~i~~l~~~l~~~~~vvR~MPN~~~~vg~g~t~~~~~~ 137 (272)
T PRK12491 60 VANSADILILSIK--PDLYSSVINQIKDQIKNDVIVVTIAAGKSIKSTENEFDRKLKVIRVMPNTPVLVGEGMSALCFNE 137 (272)
T ss_pred HHhhCCEEEEEeC--hHHHHHHHHHHHHhhcCCcEEEEeCCCCcHHHHHHhcCCCCcEEEECCChHHHHcCceEEEEeCC
Confidence 6789999999998 5778888999999898999999999999999999988766689999999999888777765 677
Q ss_pred CCCHHHHHHHHHHHHHcCCeeEEEcCC--CCccc-cc---ccHHHHHHHH--HHHHcCCCHHHHHHHH
Q 007805 463 RTSAQVILDLMTVGKIIKKVPVVVGNC--TGFAV-NR---AFFPYSQSAR--LLVSLGVDVFRIDSAI 522 (589)
Q Consensus 463 ~t~~e~~~~~~~l~~~lG~~~v~v~d~--~Gfi~-nR---i~~~~~~Ea~--~l~~~Gv~~~~iD~~~ 522 (589)
..+++..+.+..+++.+|...++ .|. ..+.+ .- -+..++.|++ ..++.|++.++.....
T Consensus 138 ~~~~~~~~~v~~lf~~~G~~~~~-~E~~~d~~talsgsgPAf~~~~~eal~~a~v~~Gl~~~~A~~l~ 204 (272)
T PRK12491 138 MVTEKDIKEVLNIFNIFGQTEVV-NEKLMDVVTSISGSSPAYVYMFIEAMADAAVLGGMPRKQAYKFA 204 (272)
T ss_pred CCCHHHHHHHHHHHHcCCCEEEE-cHHHhhhHHHhccCcHHHHHHHHHHHHHHHHHcCCCHHHHHHHH
Confidence 88999999999999999998544 321 11100 00 1233445655 4556688888777665
No 126
>PRK11880 pyrroline-5-carboxylate reductase; Reviewed
Probab=99.61 E-value=3.3e-14 Score=143.30 Aligned_cols=188 Identities=18% Similarity=0.164 Sum_probs=136.5
Q ss_pred cceEEEEcCCCCcHHHHHHHHhCC---CeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-c
Q 007805 308 VRKVAVIGGGLMGSGIATAHILNN---IYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-S 383 (589)
Q Consensus 308 ~~kI~IIG~G~mG~~iA~~l~~~G---~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~ 383 (589)
|++|+|||+|.||++++..+.++| ++|.+||+++++.+...+.+ | +..+.+. +
T Consensus 2 mm~I~iIG~G~mG~~la~~l~~~g~~~~~v~v~~r~~~~~~~~~~~~----------g-------------~~~~~~~~~ 58 (267)
T PRK11880 2 MKKIGFIGGGNMASAIIGGLLASGVPAKDIIVSDPSPEKRAALAEEY----------G-------------VRAATDNQE 58 (267)
T ss_pred CCEEEEEechHHHHHHHHHHHhCCCCcceEEEEcCCHHHHHHHHHhc----------C-------------CeecCChHH
Confidence 568999999999999999999999 78999999988766542210 1 1223344 4
Q ss_pred CCCCCCEEEEeccCChHHHHHHHHHHHHhCCCCcEEEecCCCCCHHHHhcccCCCCcEEEecCCCCCCCCCeee-EecCC
Q 007805 384 EFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLE-IVRTE 462 (589)
Q Consensus 384 ~~~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~~~~~~~~~~~r~ig~h~~~p~~~~~lve-iv~~~ 462 (589)
.+.++|+||+|+| +....++++++.+.+ +++|+|.+++++.+.+...++...+++..||..|......+. ++++.
T Consensus 59 ~~~~advVil~v~--~~~~~~v~~~l~~~~--~~~vvs~~~gi~~~~l~~~~~~~~~iv~~~P~~p~~~~~~~~~i~~~~ 134 (267)
T PRK11880 59 AAQEADVVVLAVK--PQVMEEVLSELKGQL--DKLVVSIAAGVTLARLERLLGADLPVVRAMPNTPALVGAGMTALTANA 134 (267)
T ss_pred HHhcCCEEEEEcC--HHHHHHHHHHHHhhc--CCEEEEecCCCCHHHHHHhcCCCCcEEEecCCchHHHcCceEEEecCC
Confidence 5789999999998 666778888888876 467788899999988888776667899999998877666555 55777
Q ss_pred CCCHHHHHHHHHHHHHcCCeeEEEcC--CCCcc-cccc---cHHHHHHHH-H-HHHcCCCHHHHHHHH
Q 007805 463 RTSAQVILDLMTVGKIIKKVPVVVGN--CTGFA-VNRA---FFPYSQSAR-L-LVSLGVDVFRIDSAI 522 (589)
Q Consensus 463 ~t~~e~~~~~~~l~~~lG~~~v~v~d--~~Gfi-~nRi---~~~~~~Ea~-~-l~~~Gv~~~~iD~~~ 522 (589)
.++++..+.++.+++.+|..+++..+ ..... ..-. +..++.|++ . ..+.|+++++..+++
T Consensus 135 ~~~~~~~~~v~~l~~~lG~~~~~~~e~~~d~~~a~~~~~pa~~~~~~~~~~~~~~~~Gl~~~~a~~~~ 202 (267)
T PRK11880 135 LVSAEDRELVENLLSAFGKVVWVDDEKQMDAVTAVSGSGPAYVFLFIEALADAGVKLGLPREQARKLA 202 (267)
T ss_pred CCCHHHHHHHHHHHHhCCeEEEECChHhcchHHHHhcChHHHHHHHHHHHHHHHHHcCCCHHHHHHHH
Confidence 88999999999999999975544322 11111 1111 112333544 3 345699998876665
No 127
>PRK07679 pyrroline-5-carboxylate reductase; Reviewed
Probab=99.60 E-value=2.1e-14 Score=145.50 Aligned_cols=190 Identities=15% Similarity=0.152 Sum_probs=136.6
Q ss_pred ccceEEEEcCCCCcHHHHHHHHhCC----CeEEEEeCChH-HHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCC
Q 007805 307 GVRKVAVIGGGLMGSGIATAHILNN----IYVVLKEVNSE-YLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLD 381 (589)
Q Consensus 307 ~~~kI~IIG~G~mG~~iA~~l~~~G----~~V~~~d~~~~-~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~ 381 (589)
+.+||+|||+|+||.+|+..|+++| ++|++||++++ +++.... +.| +..+.+
T Consensus 2 ~~mkI~~IG~G~mG~aia~~l~~~g~~~~~~v~v~~r~~~~~~~~l~~----------~~g-------------~~~~~~ 58 (279)
T PRK07679 2 SIQNISFLGAGSIAEAIIGGLLHANVVKGEQITVSNRSNETRLQELHQ----------KYG-------------VKGTHN 58 (279)
T ss_pred CCCEEEEECccHHHHHHHHHHHHCCCCCcceEEEECCCCHHHHHHHHH----------hcC-------------ceEeCC
Confidence 3468999999999999999999998 78999999764 4443211 001 223344
Q ss_pred c-cCCCCCCEEEEeccCChHHHHHHHHHHHHhCCCCcEEEecCCCCCHHHHhcccCCCCcEEEecCCCCCCCCC-eeeEe
Q 007805 382 Y-SEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMP-LLEIV 459 (589)
Q Consensus 382 ~-~~~~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~~~~~~~~~~~r~ig~h~~~p~~~~~-lveiv 459 (589)
. +.+++||+||.||| ++...+++.++.+.++++++|+|..++++++.+....+...++++.||+.|..... +.-++
T Consensus 59 ~~e~~~~aDvVilav~--p~~~~~vl~~l~~~~~~~~liIs~~aGi~~~~l~~~~~~~~~v~r~mPn~~~~~~~~~t~~~ 136 (279)
T PRK07679 59 KKELLTDANILFLAMK--PKDVAEALIPFKEYIHNNQLIISLLAGVSTHSIRNLLQKDVPIIRAMPNTSAAILKSATAIS 136 (279)
T ss_pred HHHHHhcCCEEEEEeC--HHHHHHHHHHHHhhcCCCCEEEEECCCCCHHHHHHHcCCCCeEEEECCCHHHHHhcccEEEe
Confidence 4 56789999999998 55566788889888888899999889999998888776556799999977765533 44455
Q ss_pred cCCCCCHHHHHHHHHHHHHcCCeeEEEcCCC--Ccccc----cccHHHHHHHHH--HHHcCCCHHHHHHHH
Q 007805 460 RTERTSAQVILDLMTVGKIIKKVPVVVGNCT--GFAVN----RAFFPYSQSARL--LVSLGVDVFRIDSAI 522 (589)
Q Consensus 460 ~~~~t~~e~~~~~~~l~~~lG~~~v~v~d~~--Gfi~n----Ri~~~~~~Ea~~--l~~~Gv~~~~iD~~~ 522 (589)
+++..+++..+.++++++.+|...+ +.+.- .+.+. .-+..++.|++. ....|++.++.-.++
T Consensus 137 ~~~~~~~~~~~~v~~l~~~~G~~~~-v~e~~~~~~~a~~Gsgpa~~~~~~eal~e~~~~~Gl~~~~a~~~~ 206 (279)
T PRK07679 137 PSKHATAEHIQTAKALFETIGLVSV-VEEEDMHAVTALSGSGPAYIYYVVEAMEKAAKKIGLKEDVAKSLI 206 (279)
T ss_pred eCCCCCHHHHHHHHHHHHhCCcEEE-eCHHHhhhHHHhhcCHHHHHHHHHHHHHHHHHHcCCCHHHHHHHH
Confidence 7878889999999999999998554 32211 00000 002344456553 446699998887776
No 128
>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]
Probab=99.59 E-value=2.5e-14 Score=142.91 Aligned_cols=166 Identities=16% Similarity=0.182 Sum_probs=124.4
Q ss_pred cceEEEEcCCCCcHHHHHHHHhCCCeEEEEeCChH--HHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCC--cc
Q 007805 308 VRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSE--YLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLD--YS 383 (589)
Q Consensus 308 ~~kI~IIG~G~mG~~iA~~l~~~G~~V~~~d~~~~--~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~--~~ 383 (589)
.++|+|+|+|.||+++|..+..+|+.|.+++++.+ +++.+ .+.|..+ ..+.+ .+
T Consensus 3 ~~~v~IvG~GliG~s~a~~l~~~g~~v~i~g~d~~~~~~~~a-----------~~lgv~d-----------~~~~~~~~~ 60 (279)
T COG0287 3 SMKVGIVGLGLMGGSLARALKEAGLVVRIIGRDRSAATLKAA-----------LELGVID-----------ELTVAGLAE 60 (279)
T ss_pred CcEEEEECCchHHHHHHHHHHHcCCeEEEEeecCcHHHHHHH-----------hhcCccc-----------ccccchhhh
Confidence 57899999999999999999999998866665544 44332 2233322 11122 26
Q ss_pred CCCCCCEEEEeccCChHHHHHHHHHHHHhCCCCcEEEecCCC--CCHHHHhcccCCCCcEEEecCCCCCC------CCCe
Q 007805 384 EFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTST--IDLNIVGEKTSSQDRIIGAHFFSPAH------VMPL 455 (589)
Q Consensus 384 ~~~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~--~~~~~~~~~~~~~~r~ig~h~~~p~~------~~~l 455 (589)
.+.++|+||.||| +....++++++.++++++++|++.+|+ -+++.+....+...+|++.||+..++ ....
T Consensus 61 ~~~~aD~VivavP--i~~~~~~l~~l~~~l~~g~iv~Dv~S~K~~v~~a~~~~~~~~~~~vg~HPM~G~~~~~~lf~~~~ 138 (279)
T COG0287 61 AAAEADLVIVAVP--IEATEEVLKELAPHLKKGAIVTDVGSVKSSVVEAMEKYLPGDVRFVGGHPMFGPEADAGLFENAV 138 (279)
T ss_pred hcccCCEEEEecc--HHHHHHHHHHhcccCCCCCEEEecccccHHHHHHHHHhccCCCeeEecCCCCCCcccccccCCCE
Confidence 6788999999999 888889999999999999999987775 34555555554323899999977762 3455
Q ss_pred eeEecCCCCCHHHHHHHHHHHHHcCCeeEEE-cCCCCcccccc
Q 007805 456 LEIVRTERTSAQVILDLMTVGKIIKKVPVVV-GNCTGFAVNRA 497 (589)
Q Consensus 456 veiv~~~~t~~e~~~~~~~l~~~lG~~~v~v-~d~~Gfi~nRi 497 (589)
+.+++++.++.+.++.++++++.+|.+++.+ .+.+-.+.-.+
T Consensus 139 ~vltp~~~~~~~~~~~~~~~~~~~ga~~v~~~~eeHD~~~a~v 181 (279)
T COG0287 139 VVLTPSEGTEKEWVEEVKRLWEALGARLVEMDAEEHDRVMAAV 181 (279)
T ss_pred EEEcCCCCCCHHHHHHHHHHHHHcCCEEEEcChHHHhHHHHHH
Confidence 6688898899999999999999999999998 34444444433
No 129
>PRK15461 NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional
Probab=99.59 E-value=3.1e-14 Score=145.23 Aligned_cols=187 Identities=13% Similarity=0.120 Sum_probs=127.1
Q ss_pred ceEEEEcCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cCCCC
Q 007805 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD 387 (589)
Q Consensus 309 ~kI~IIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~ 387 (589)
+||+|||+|.||.+||..|+++|++|++||+++++.+...+ .| +...++. +.+++
T Consensus 2 ~~Ig~IGlG~mG~~mA~~l~~~G~~V~v~d~~~~~~~~~~~-----------~g-------------~~~~~s~~~~~~~ 57 (296)
T PRK15461 2 AAIAFIGLGQMGSPMASNLLKQGHQLQVFDVNPQAVDALVD-----------KG-------------ATPAASPAQAAAG 57 (296)
T ss_pred CeEEEEeeCHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHH-----------cC-------------CcccCCHHHHHhc
Confidence 58999999999999999999999999999999998766421 12 1233344 66789
Q ss_pred CCEEEEeccCChHHHHHHHH--HHHHhCCCCcEEEecCCCCCH--HHHhcccC-CCCcEEEecCCCCC---CCCCeeeEe
Q 007805 388 VDMVIEAVIESVPLKQKIFS--ELEKACPPHCILATNTSTIDL--NIVGEKTS-SQDRIIGAHFFSPA---HVMPLLEIV 459 (589)
Q Consensus 388 aDlVIeavpe~~~~k~~v~~--~l~~~~~~~~ii~s~ts~~~~--~~~~~~~~-~~~r~ig~h~~~p~---~~~~lveiv 459 (589)
||+||+|+|++..++..+.. .+.+.+++++++++.++..+. .++...+. +..+|+...-...+ ..+.++.++
T Consensus 58 aDvVi~~vp~~~~~~~vl~~~~~i~~~l~~g~lvid~sT~~p~~~~~l~~~l~~~g~~~ldapV~g~~~~a~~g~l~~~~ 137 (296)
T PRK15461 58 AEFVITMLPNGDLVRSVLFGENGVCEGLSRDALVIDMSTIHPLQTDKLIADMQAKGFSMMDVPVGRTSDNAITGTLLLLA 137 (296)
T ss_pred CCEEEEecCCHHHHHHHHcCcccHhhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCcEEEccCCCCHHHHHhCcEEEEE
Confidence 99999999987666655442 466677888887655444333 23433332 22344433322221 233344454
Q ss_pred cCCCCCHHHHHHHHHHHHHcCCeeEEEcCCC-C---ccccccc----HHHHHHHHHHHHc-CCCHHHHHHHH
Q 007805 460 RTERTSAQVILDLMTVGKIIKKVPVVVGNCT-G---FAVNRAF----FPYSQSARLLVSL-GVDVFRIDSAI 522 (589)
Q Consensus 460 ~~~~t~~e~~~~~~~l~~~lG~~~v~v~d~~-G---fi~nRi~----~~~~~Ea~~l~~~-Gv~~~~iD~~~ 522 (589)
.+ +++++++++++++.+|++++++++.. | -++|.++ ...+.|++.+.+. |++++.+=.++
T Consensus 138 gg---~~~~~~~~~p~l~~~g~~~~~~g~~G~g~~~Kl~~N~~~~~~~~~~~Ea~~l~~~~Gld~~~~~~~l 206 (296)
T PRK15461 138 GG---TAEQVERATPILMAMGNELINAGGPGMGIRVKLINNYMSIALNALSAEAAVLCEALGLSFDVALKVM 206 (296)
T ss_pred CC---CHHHHHHHHHHHHHHcCCeEeeCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHH
Confidence 55 88999999999999999999987632 1 1234332 3445799988876 99998866666
No 130
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=99.56 E-value=2.5e-15 Score=139.57 Aligned_cols=152 Identities=15% Similarity=0.077 Sum_probs=102.7
Q ss_pred cceEEEEcCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cCCC
Q 007805 308 VRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFK 386 (589)
Q Consensus 308 ~~kI~IIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~ 386 (589)
|+||+|||+|.||.+||.+|+++||+|++||+++++.++..+ . .....+++ +.++
T Consensus 1 m~~Ig~IGlG~mG~~~a~~L~~~g~~v~~~d~~~~~~~~~~~-----------~-------------g~~~~~s~~e~~~ 56 (163)
T PF03446_consen 1 MMKIGFIGLGNMGSAMARNLAKAGYEVTVYDRSPEKAEALAE-----------A-------------GAEVADSPAEAAE 56 (163)
T ss_dssp -BEEEEE--SHHHHHHHHHHHHTTTEEEEEESSHHHHHHHHH-----------T-------------TEEEESSHHHHHH
T ss_pred CCEEEEEchHHHHHHHHHHHHhcCCeEEeeccchhhhhhhHH-----------h-------------hhhhhhhhhhHhh
Confidence 689999999999999999999999999999999998877522 1 24555666 6788
Q ss_pred CCCEEEEeccCChHHHHHHHHH--HHHhCCCCcEEEecCCCCCH--HHHhcccC-CCCcEEEecCCCCC---CCCCeeeE
Q 007805 387 DVDMVIEAVIESVPLKQKIFSE--LEKACPPHCILATNTSTIDL--NIVGEKTS-SQDRIIGAHFFSPA---HVMPLLEI 458 (589)
Q Consensus 387 ~aDlVIeavpe~~~~k~~v~~~--l~~~~~~~~ii~s~ts~~~~--~~~~~~~~-~~~r~ig~h~~~p~---~~~~lvei 458 (589)
+||+||.|+|++.+ .++++.+ +.+.++++.+|+..++..+- .++.+.+. +..+|+-......+ ..+.+.-+
T Consensus 57 ~~dvvi~~v~~~~~-v~~v~~~~~i~~~l~~g~iiid~sT~~p~~~~~~~~~~~~~g~~~vdapV~Gg~~~a~~g~l~~~ 135 (163)
T PF03446_consen 57 QADVVILCVPDDDA-VEAVLFGENILAGLRPGKIIIDMSTISPETSRELAERLAAKGVRYVDAPVSGGPPGAEEGTLTIM 135 (163)
T ss_dssp HBSEEEE-SSSHHH-HHHHHHCTTHGGGS-TTEEEEE-SS--HHHHHHHHHHHHHTTEEEEEEEEESHHHHHHHTTEEEE
T ss_pred cccceEeecccchh-hhhhhhhhHHhhccccceEEEecCCcchhhhhhhhhhhhhccceeeeeeeecccccccccceEEE
Confidence 99999999996555 4566666 88889999988754443332 23333332 22233333222111 23455667
Q ss_pred ecCCCCCHHHHHHHHHHHHHcCCeeEEE-c
Q 007805 459 VRTERTSAQVILDLMTVGKIIKKVPVVV-G 487 (589)
Q Consensus 459 v~~~~t~~e~~~~~~~l~~~lG~~~v~v-~ 487 (589)
+.| +++++++++++++.+|++++++ +
T Consensus 136 ~gG---~~~~~~~~~~~l~~~~~~v~~~~G 162 (163)
T PF03446_consen 136 VGG---DEEAFERVRPLLEAMGKNVYHYVG 162 (163)
T ss_dssp EES----HHHHHHHHHHHHHHEEEEEEE-E
T ss_pred ccC---CHHHHHHHHHHHHHHhCCceeeeC
Confidence 777 7899999999999999998854 5
No 131
>TIGR01692 HIBADH 3-hydroxyisobutyrate dehydrogenase. This enzyme belongs to the 3-hydroxyacid dehydrogenase family, sharing a common evolutionary origin and enzymatic mechanism with 6-phosphogluconate. HIBADH exhibits sequence similarity to the NAD binding domain of 6-phosphogluconate dehydrogenase above trusted (pfam03446).
Probab=99.55 E-value=2.9e-14 Score=145.13 Aligned_cols=185 Identities=17% Similarity=0.135 Sum_probs=127.4
Q ss_pred EEcCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cCCCCCCEE
Q 007805 313 VIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKDVDMV 391 (589)
Q Consensus 313 IIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~aDlV 391 (589)
|||+|.||.+||..|+++|++|++||+++++.+... +.| ...+++. +.+++||+|
T Consensus 1 ~IGlG~mG~~mA~~L~~~G~~V~v~dr~~~~~~~l~-----------~~g-------------~~~~~s~~~~~~~advV 56 (288)
T TIGR01692 1 FIGLGNMGGPMAANLLKAGHPVRVFDLFPDAVEEAV-----------AAG-------------AQAAASPAEAAEGADRV 56 (288)
T ss_pred CCcccHhHHHHHHHHHhCCCeEEEEeCCHHHHHHHH-----------HcC-------------CeecCCHHHHHhcCCEE
Confidence 689999999999999999999999999998876642 122 2233444 668899999
Q ss_pred EEeccCChHHHHHHH---HHHHHhCCCCcEEEecCCCCCHHH---HhcccC-CCCcEEEecCCC---CCCCCCeeeEecC
Q 007805 392 IEAVIESVPLKQKIF---SELEKACPPHCILATNTSTIDLNI---VGEKTS-SQDRIIGAHFFS---PAHVMPLLEIVRT 461 (589)
Q Consensus 392 Ieavpe~~~~k~~v~---~~l~~~~~~~~ii~s~ts~~~~~~---~~~~~~-~~~r~ig~h~~~---p~~~~~lveiv~~ 461 (589)
|.|||.+..+. .++ .++.+.+++++++++.+ ++.++. +.+.+. +..+|+...-.. +...+.+..++.|
T Consensus 57 il~vp~~~~~~-~v~~g~~~l~~~~~~g~~vid~s-t~~p~~~~~~~~~~~~~g~~~vdaPv~Gg~~~a~~g~l~~~~gg 134 (288)
T TIGR01692 57 ITMLPAGQHVI-SVYSGDEGILPKVAKGSLLIDCS-TIDPDSARKLAELAAAHGAVFMDAPVSGGVGGARAGTLTFMVGG 134 (288)
T ss_pred EEeCCChHHHH-HHHcCcchHhhcCCCCCEEEECC-CCCHHHHHHHHHHHHHcCCcEEECCCCCCHHHHhhCcEEEEECC
Confidence 99999655544 444 57777888888887555 555543 333332 222333321111 1122344445555
Q ss_pred CCCCHHHHHHHHHHHHHcCCeeEEEcC-CCCc---ccccccHH----HHHHHHHHHHc-CCCHHHHHHHH-HhcC
Q 007805 462 ERTSAQVILDLMTVGKIIKKVPVVVGN-CTGF---AVNRAFFP----YSQSARLLVSL-GVDVFRIDSAI-RSFG 526 (589)
Q Consensus 462 ~~t~~e~~~~~~~l~~~lG~~~v~v~d-~~Gf---i~nRi~~~----~~~Ea~~l~~~-Gv~~~~iD~~~-~~~g 526 (589)
+++.+++++++++.+|++++++++ ..|. ++|.++.. .+.|++.+.+. |++++++..++ .+.|
T Consensus 135 ---~~~~~~~~~~~l~~~g~~~~~~g~~g~g~~~Kl~~n~~~~~~~~~~~Ea~~la~~~Gld~~~~~~~~~~~~~ 206 (288)
T TIGR01692 135 ---VAEEFAAAEPVLGPMGRNIVHCGDHGAGQAAKICNNMLLGISMIGTAEAMALGEKLGLDPKVLFEIANTSSG 206 (288)
T ss_pred ---CHHHHHHHHHHHHHhcCCeEeeCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhcCCc
Confidence 678999999999999999999976 4444 33554432 35799988877 89999998888 5544
No 132
>PRK08507 prephenate dehydrogenase; Validated
Probab=99.54 E-value=2.9e-13 Score=136.85 Aligned_cols=150 Identities=19% Similarity=0.195 Sum_probs=110.3
Q ss_pred eEEEEcCCCCcHHHHHHHHhCCC--eEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCccCCCC
Q 007805 310 KVAVIGGGLMGSGIATAHILNNI--YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKD 387 (589)
Q Consensus 310 kI~IIG~G~mG~~iA~~l~~~G~--~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~ 387 (589)
||+|||+|.||+++|..|.++|+ +|++||++++.++.+. +.|.. ....+.+.+.+
T Consensus 2 ~I~iIG~G~mG~sla~~l~~~g~~~~v~~~d~~~~~~~~~~-----------~~g~~------------~~~~~~~~~~~ 58 (275)
T PRK08507 2 KIGIIGLGLMGGSLGLALKEKGLISKVYGYDHNELHLKKAL-----------ELGLV------------DEIVSFEELKK 58 (275)
T ss_pred EEEEEccCHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHH-----------HCCCC------------cccCCHHHHhc
Confidence 79999999999999999999996 7999999998876642 22211 11223333446
Q ss_pred CCEEEEeccCChHHHHHHHHHHHHhCCCCcEEEecCCCCCHHHHhcccC--CCCcEEEecCCCC-----C-C------CC
Q 007805 388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTS--SQDRIIGAHFFSP-----A-H------VM 453 (589)
Q Consensus 388 aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~~~~~~~~--~~~r~ig~h~~~p-----~-~------~~ 453 (589)
||+||+|+| +....+++.++.+ ++++++|++.+|+ .. .+...+. .+.+|++.||+.+ | . .+
T Consensus 59 aD~Vilavp--~~~~~~~~~~l~~-l~~~~iv~d~gs~-k~-~i~~~~~~~~~~~~v~~hPmaG~e~~Gp~~a~~~l~~g 133 (275)
T PRK08507 59 CDVIFLAIP--VDAIIEILPKLLD-IKENTTIIDLGST-KA-KIIESVPKHIRKNFIAAHPMAGTENSGPKAAIKGLYEG 133 (275)
T ss_pred CCEEEEeCc--HHHHHHHHHHHhc-cCCCCEEEECccc-hH-HHHHHHHHhcCCCEEecCCcCcCchhhHHhccHHHhCC
Confidence 999999999 5556678889988 8889988875553 22 1222111 2357999999742 1 1 34
Q ss_pred CeeeEecCCCCCHHHHHHHHHHHHHcCCeeEEEc
Q 007805 454 PLLEIVRTERTSAQVILDLMTVGKIIKKVPVVVG 487 (589)
Q Consensus 454 ~lveiv~~~~t~~e~~~~~~~l~~~lG~~~v~v~ 487 (589)
..+.+++++.++++.++.+.++++.+|.+++.+.
T Consensus 134 ~~~il~~~~~~~~~~~~~v~~l~~~~G~~~~~~~ 167 (275)
T PRK08507 134 KVVVLCDVEKSGEKHQERAKEIFSGLGMRIVYMD 167 (275)
T ss_pred CeEEEecCCCCCHHHHHHHHHHHHHhCCEEEEeC
Confidence 4667888888899999999999999999999984
No 133
>PRK08655 prephenate dehydrogenase; Provisional
Probab=99.53 E-value=1.9e-13 Score=146.23 Aligned_cols=153 Identities=18% Similarity=0.144 Sum_probs=120.2
Q ss_pred ceEEEEc-CCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cCCC
Q 007805 309 RKVAVIG-GGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFK 386 (589)
Q Consensus 309 ~kI~IIG-~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~ 386 (589)
++|+||| +|.||+++|..|.++|++|++||++++....... +.| +..+++. +.++
T Consensus 1 MkI~IIGG~G~mG~slA~~L~~~G~~V~v~~r~~~~~~~~a~----------~~g-------------v~~~~~~~e~~~ 57 (437)
T PRK08655 1 MKISIIGGTGGLGKWFARFLKEKGFEVIVTGRDPKKGKEVAK----------ELG-------------VEYANDNIDAAK 57 (437)
T ss_pred CEEEEEecCCHHHHHHHHHHHHCCCEEEEEECChHHHHHHHH----------HcC-------------CeeccCHHHHhc
Confidence 3799998 7999999999999999999999999876543211 111 2233444 5678
Q ss_pred CCCEEEEeccCChHHHHHHHHHHHHhCCCCcEEEecCCC--CCHHHHhcccCCCCcEEEecCCCC----CCCCCeeeEec
Q 007805 387 DVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTST--IDLNIVGEKTSSQDRIIGAHFFSP----AHVMPLLEIVR 460 (589)
Q Consensus 387 ~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~--~~~~~~~~~~~~~~r~ig~h~~~p----~~~~~lveiv~ 460 (589)
+||+||.|+| +....+++.++.+.++++++|++.+|. .+...+....+...+|++.||+.. ...+..+.+++
T Consensus 58 ~aDvVIlavp--~~~~~~vl~~l~~~l~~~~iViDvsSvK~~~~~~l~~~~~~~~~~V~~HPmaGp~~~~~~g~~~il~p 135 (437)
T PRK08655 58 DADIVIISVP--INVTEDVIKEVAPHVKEGSLLMDVTSVKERPVEAMEEYAPEGVEILPTHPMFGPRTPSLKGQVVILTP 135 (437)
T ss_pred cCCEEEEecC--HHHHHHHHHHHHhhCCCCCEEEEcccccHHHHHHHHHhcCCCCEEEEcCCCCCCCCcccCCCEEEEec
Confidence 9999999999 455678899999999999999887773 445566666555568999997643 34566777888
Q ss_pred CCCCCHHHHHHHHHHHHHcCCeeEEE
Q 007805 461 TERTSAQVILDLMTVGKIIKKVPVVV 486 (589)
Q Consensus 461 ~~~t~~e~~~~~~~l~~~lG~~~v~v 486 (589)
++.++++.++.+.++++.+|.+++++
T Consensus 136 ~~~~~~~~~~~v~~ll~~~G~~v~~~ 161 (437)
T PRK08655 136 TEKRSNPWFDKVKNFLEKEGARVIVT 161 (437)
T ss_pred CCCCCHHHHHHHHHHHHHcCCEEEEC
Confidence 88889999999999999999999987
No 134
>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial. Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).
Probab=99.53 E-value=1.8e-14 Score=163.10 Aligned_cols=105 Identities=22% Similarity=0.204 Sum_probs=96.3
Q ss_pred HHHHHHHHcCCeeEEEcCCCCcccccccHHHHHHHHHHHHcCC--CHHHHHHHH-HhcCCCC---cHHHHHHHhchHHHH
Q 007805 471 DLMTVGKIIKKVPVVVGNCTGFAVNRAFFPYSQSARLLVSLGV--DVFRIDSAI-RSFGLPI---GPFQLLDLAGYGVAA 544 (589)
Q Consensus 471 ~~~~l~~~lG~~~v~v~d~~Gfi~nRi~~~~~~Ea~~l~~~Gv--~~~~iD~~~-~~~g~p~---Gpf~~~D~~Gld~~~ 544 (589)
.+.+++..+++.++.+++.+|||+||++.+++|||.+|+++|| +++|||.++ .|+|||+ |||+++|.+|+|.++
T Consensus 626 ~v~~~~~~~~k~p~~~~~~~g~I~~Rll~~~~nEA~rlLeEGV~a~~~DID~a~~~G~GfP~~~gGP~~~aD~~Gld~v~ 705 (737)
T TIGR02441 626 DADEILAQYKLPPKAEVSSPEDIQIRLVSRFVNEAVLCLEEGILASPSEGDIGAVFGLGFPPFLGGPFRFVDLYGADKLV 705 (737)
T ss_pred HHHHHHHHhccCcccccCChHHHHHHHHHHHHHHHHHHhhcCccCCHHHHHHHHHhCCCCCCccCCHHHHHHHhCHHHHH
Confidence 3556667778888766789999999999999999999999997 999999999 8999996 999999999999999
Q ss_pred HHHHHHHHhCCCCCCchHHHHHHHHc-CCCCcccce
Q 007805 545 ATSKEFDKAFPDRSFQSPLVDLLLKS-GRNGNKGFS 579 (589)
Q Consensus 545 ~~~~~l~~~~~~~~~~~~~l~~~v~~-g~~G~~Gfy 579 (589)
++++.+++.+++++.|+++|++|+++ | +.||
T Consensus 706 ~~~~~l~~~~g~~~~p~~lL~~~~~~~g----~~f~ 737 (737)
T TIGR02441 706 DKMEKYAAAYGVQFTPCQLLLDHAKSPG----KKFY 737 (737)
T ss_pred HHHHHHHHHhCCCcCCCHHHHHHHHhcC----CCCC
Confidence 99999999999888899999999999 8 7786
No 135
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=99.51 E-value=3.1e-13 Score=138.89 Aligned_cols=161 Identities=17% Similarity=0.127 Sum_probs=117.4
Q ss_pred ccceEEEEcCCCCcHHHHHHHHhCCC--eEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-c
Q 007805 307 GVRKVAVIGGGLMGSGIATAHILNNI--YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-S 383 (589)
Q Consensus 307 ~~~kI~IIG~G~mG~~iA~~l~~~G~--~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~ 383 (589)
.+++|+|||+|.||.++|..|.+.|+ +|++||+++++++.+.+ .|.. .....+. +
T Consensus 5 ~~~~I~IIG~G~mG~sla~~l~~~g~~~~V~~~dr~~~~~~~a~~-----------~g~~-----------~~~~~~~~~ 62 (307)
T PRK07502 5 LFDRVALIGIGLIGSSLARAIRRLGLAGEIVGADRSAETRARARE-----------LGLG-----------DRVTTSAAE 62 (307)
T ss_pred CCcEEEEEeeCHHHHHHHHHHHhcCCCcEEEEEECCHHHHHHHHh-----------CCCC-----------ceecCCHHH
Confidence 46799999999999999999999985 89999999987766421 2211 0122333 5
Q ss_pred CCCCCCEEEEeccCChHHHHHHHHHHHHhCCCCcEEEecCCCC--CHHHHhcccCCCCcEEEecCCCCCCC---------
Q 007805 384 EFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTI--DLNIVGEKTSSQDRIIGAHFFSPAHV--------- 452 (589)
Q Consensus 384 ~~~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~--~~~~~~~~~~~~~r~ig~h~~~p~~~--------- 452 (589)
.+++||+||+|+| ......++.++.+.++++++|++.+|.- .+..+....+...+|++.||+.+...
T Consensus 63 ~~~~aDvViiavp--~~~~~~v~~~l~~~l~~~~iv~dvgs~k~~~~~~~~~~~~~~~~~v~~hPm~g~e~~G~~~a~~~ 140 (307)
T PRK07502 63 AVKGADLVILCVP--VGASGAVAAEIAPHLKPGAIVTDVGSVKASVIAAMAPHLPEGVHFIPGHPLAGTEHSGPDAGFAE 140 (307)
T ss_pred HhcCCCEEEECCC--HHHHHHHHHHHHhhCCCCCEEEeCccchHHHHHHHHHhCCCCCeEEeCCCCCCCcccchhhcCHH
Confidence 6789999999999 4456788888988899998886654421 12334444444458999999875432
Q ss_pred ---CCeeeEecCCCCCHHHHHHHHHHHHHcCCeeEEEc-CCCC
Q 007805 453 ---MPLLEIVRTERTSAQVILDLMTVGKIIKKVPVVVG-NCTG 491 (589)
Q Consensus 453 ---~~lveiv~~~~t~~e~~~~~~~l~~~lG~~~v~v~-d~~G 491 (589)
+..+.+++...++++.++.+.++++.+|.+++++. +.+.
T Consensus 141 l~~g~~~~l~~~~~~~~~~~~~~~~l~~~lG~~~~~~~~~~hD 183 (307)
T PRK07502 141 LFENRWCILTPPEGTDPAAVARLTAFWRALGARVEEMDPEHHD 183 (307)
T ss_pred HHCCCeEEEeCCCCCCHHHHHHHHHHHHHcCCEEEEcCHHHHh
Confidence 22345777778899999999999999999999873 3444
No 136
>PLN02350 phosphogluconate dehydrogenase (decarboxylating)
Probab=99.51 E-value=2.1e-13 Score=146.38 Aligned_cols=193 Identities=12% Similarity=0.089 Sum_probs=128.5
Q ss_pred ccceEEEEcCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cC-
Q 007805 307 GVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SE- 384 (589)
Q Consensus 307 ~~~kI~IIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~- 384 (589)
.+.+|||||+|.||.+||.+|+++|++|++|||++++.+...+.. ...|. ..+....++ +.
T Consensus 5 ~~~~IG~IGLG~MG~~mA~nL~~~G~~V~V~NRt~~k~~~l~~~~-------~~~Ga----------~~~~~a~s~~e~v 67 (493)
T PLN02350 5 ALSRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERA-------KKEGN----------LPLYGFKDPEDFV 67 (493)
T ss_pred CCCCEEEEeeHHHHHHHHHHHHhCCCeEEEECCCHHHHHHHHHhh-------hhcCC----------cccccCCCHHHHH
Confidence 356799999999999999999999999999999999887753310 00121 011233344 33
Q ss_pred --CCCCCEEEEeccCChHHHHHHHHHHHHhCCCCcEEEecCCCCCHH--HHhcccC-CCCcEEEecCCCCC---CCCCee
Q 007805 385 --FKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLN--IVGEKTS-SQDRIIGAHFFSPA---HVMPLL 456 (589)
Q Consensus 385 --~~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~--~~~~~~~-~~~r~ig~h~~~p~---~~~~lv 456 (589)
++.+|+||.|||.+..+.. ++..+.+.+.++.||++.++..+.+ .+.+.+. +..+|+++.-...+ ..++ .
T Consensus 68 ~~l~~~dvIi~~v~~~~aV~~-Vi~gl~~~l~~G~iiID~sT~~~~~t~~~~~~l~~~Gi~fldapVSGG~~gA~~G~-~ 145 (493)
T PLN02350 68 LSIQKPRSVIILVKAGAPVDQ-TIKALSEYMEPGDCIIDGGNEWYENTERRIKEAAEKGLLYLGMGVSGGEEGARNGP-S 145 (493)
T ss_pred hcCCCCCEEEEECCCcHHHHH-HHHHHHhhcCCCCEEEECCCCCHHHHHHHHHHHHHcCCeEEeCCCcCCHHHhcCCC-e
Confidence 3459999999997776544 4578888998898888665544332 2333332 23344444433221 3334 3
Q ss_pred eEecCCCCCHHHHHHHHHHHHHcCCe------eEEEcCCCC--c----ccccccHH---HHHHHHHHHHc--CCCHHHHH
Q 007805 457 EIVRTERTSAQVILDLMTVGKIIKKV------PVVVGNCTG--F----AVNRAFFP---YSQSARLLVSL--GVDVFRID 519 (589)
Q Consensus 457 eiv~~~~t~~e~~~~~~~l~~~lG~~------~v~v~d~~G--f----i~nRi~~~---~~~Ea~~l~~~--Gv~~~~iD 519 (589)
.++.| +++++++++++++.++.+ ++++++ +| . +.|-+.+. .+.||+.+++. |++++++-
T Consensus 146 im~GG---~~~a~~~v~pvL~~ia~k~~~~~~v~~vG~-~GaG~~vKlv~N~i~~~~m~~iaEA~~l~~~~~Gld~~~l~ 221 (493)
T PLN02350 146 LMPGG---SFEAYKNIEDILEKVAAQVDDGPCVTYIGP-GGAGNFVKMVHNGIEYGDMQLISEAYDVLKSVGGLSNEELA 221 (493)
T ss_pred EEecC---CHHHHHHHHHHHHHHhhhcCCCCcEEEeCC-cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCHHHHH
Confidence 34444 899999999999999964 778876 34 2 33555443 34599999875 89999988
Q ss_pred HHH
Q 007805 520 SAI 522 (589)
Q Consensus 520 ~~~ 522 (589)
.++
T Consensus 222 ~vf 224 (493)
T PLN02350 222 EVF 224 (493)
T ss_pred HHH
Confidence 874
No 137
>PLN02256 arogenate dehydrogenase
Probab=99.51 E-value=3.3e-13 Score=137.34 Aligned_cols=153 Identities=11% Similarity=0.019 Sum_probs=113.1
Q ss_pred ccceEEEEcCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cCC
Q 007805 307 GVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEF 385 (589)
Q Consensus 307 ~~~kI~IIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~ 385 (589)
..++|+|||+|.||+++|..+.+.|++|++||+++.. +.+. +.| +...++. +.+
T Consensus 35 ~~~kI~IIG~G~mG~slA~~L~~~G~~V~~~d~~~~~-~~a~-----------~~g-------------v~~~~~~~e~~ 89 (304)
T PLN02256 35 RKLKIGIVGFGNFGQFLAKTFVKQGHTVLATSRSDYS-DIAA-----------ELG-------------VSFFRDPDDFC 89 (304)
T ss_pred CCCEEEEEeeCHHHHHHHHHHHhCCCEEEEEECccHH-HHHH-----------HcC-------------CeeeCCHHHHh
Confidence 3468999999999999999999999999999998632 2210 111 1223343 333
Q ss_pred -CCCCEEEEeccCChHHHHHHHHHH-HHhCCCCcEEEecCC--CCCHHHHhcccCCCCcEEEecCCCCCCCC------Ce
Q 007805 386 -KDVDMVIEAVIESVPLKQKIFSEL-EKACPPHCILATNTS--TIDLNIVGEKTSSQDRIIGAHFFSPAHVM------PL 455 (589)
Q Consensus 386 -~~aDlVIeavpe~~~~k~~v~~~l-~~~~~~~~ii~s~ts--~~~~~~~~~~~~~~~r~ig~h~~~p~~~~------~l 455 (589)
.++|+||+|+| +....+++.++ .++++++++|++.+| +.+++.+...++...+|++.||+.++... ..
T Consensus 90 ~~~aDvVilavp--~~~~~~vl~~l~~~~l~~~~iviDv~SvK~~~~~~~~~~l~~~~~~V~~HPmaG~e~~~~~~~~~~ 167 (304)
T PLN02256 90 EEHPDVVLLCTS--ILSTEAVLRSLPLQRLKRSTLFVDVLSVKEFPKNLLLQVLPEEFDILCTHPMFGPESGKGGWAGLP 167 (304)
T ss_pred hCCCCEEEEecC--HHHHHHHHHhhhhhccCCCCEEEecCCchHHHHHHHHHhCCCCCeEEecCCCCCCCCCccccCCCe
Confidence 47999999999 55677888888 577889999988887 45566777666555579999998877543 11
Q ss_pred eeEecC----CCCCHHHHHHHHHHHHHcCCeeEEE
Q 007805 456 LEIVRT----ERTSAQVILDLMTVGKIIKKVPVVV 486 (589)
Q Consensus 456 veiv~~----~~t~~e~~~~~~~l~~~lG~~~v~v 486 (589)
+-+.+. +.++++.++.+.++++.+|.+++.+
T Consensus 168 ~~~~~~~i~~~~~~~~~~~~l~~l~~~lGa~v~~~ 202 (304)
T PLN02256 168 FVYDKVRIGDEGEREARCERFLDIFEEEGCRMVEM 202 (304)
T ss_pred EEEecceecCCCCCHHHHHHHHHHHHHCCCEEEEe
Confidence 112221 5678899999999999999999998
No 138
>PRK15059 tartronate semialdehyde reductase; Provisional
Probab=99.50 E-value=3.6e-13 Score=136.89 Aligned_cols=186 Identities=19% Similarity=0.183 Sum_probs=124.9
Q ss_pred eEEEEcCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cCCCCC
Q 007805 310 KVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKDV 388 (589)
Q Consensus 310 kI~IIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~a 388 (589)
||+|||+|.||.+||..|.++|++|++||+++. .+.. .+.| .....+. +.+++|
T Consensus 2 ~Ig~IGlG~MG~~ma~~L~~~G~~v~v~~~~~~-~~~~-----------~~~g-------------~~~~~s~~~~~~~a 56 (292)
T PRK15059 2 KLGFIGLGIMGTPMAINLARAGHQLHVTTIGPV-ADEL-----------LSLG-------------AVSVETARQVTEAS 56 (292)
T ss_pred eEEEEccCHHHHHHHHHHHHCCCeEEEEeCCHh-HHHH-----------HHcC-------------CeecCCHHHHHhcC
Confidence 699999999999999999999999999999874 2221 1222 1222333 567899
Q ss_pred CEEEEeccCChHHHHHHHHH--HHHhCCCCcEEEecCCCCCHH---HHhccc-CCCCcEEEecCCCCC----CCCCeeeE
Q 007805 389 DMVIEAVIESVPLKQKIFSE--LEKACPPHCILATNTSTIDLN---IVGEKT-SSQDRIIGAHFFSPA----HVMPLLEI 458 (589)
Q Consensus 389 DlVIeavpe~~~~k~~v~~~--l~~~~~~~~ii~s~ts~~~~~---~~~~~~-~~~~r~ig~h~~~p~----~~~~lvei 458 (589)
|+||.|||++..++..++.+ +.+.+.++.+|++.++ ..+. ++.+.+ .+..+|+.. |.... ..+.+.-+
T Consensus 57 dvVi~~v~~~~~v~~v~~~~~g~~~~~~~g~ivvd~sT-~~p~~~~~~~~~~~~~G~~~vda-PVsGg~~~a~~g~l~~~ 134 (292)
T PRK15059 57 DIIFIMVPDTPQVEEVLFGENGCTKASLKGKTIVDMSS-ISPIETKRFARQVNELGGDYLDA-PVSGGEIGAREGTLSIM 134 (292)
T ss_pred CEEEEeCCChHHHHHHHcCCcchhccCCCCCEEEECCC-CCHHHHHHHHHHHHHcCCCEEEe-cCCCCHHHHhcCcEEEE
Confidence 99999999887766655442 5566778888775544 3333 333333 233456553 43221 23344445
Q ss_pred ecCCCCCHHHHHHHHHHHHHcCCeeEEEcCCCCc-----ccccccH----HHHHHHHHHHHc-CCCHHHHHHHH-HhcC
Q 007805 459 VRTERTSAQVILDLMTVGKIIKKVPVVVGNCTGF-----AVNRAFF----PYSQSARLLVSL-GVDVFRIDSAI-RSFG 526 (589)
Q Consensus 459 v~~~~t~~e~~~~~~~l~~~lG~~~v~v~d~~Gf-----i~nRi~~----~~~~Ea~~l~~~-Gv~~~~iD~~~-~~~g 526 (589)
+.| +++++++++++++.+|++++++++. |- ++|.++. ..+.|++.+.+. |++++.+=.++ .+.+
T Consensus 135 ~gG---~~~~~~~~~p~l~~~g~~~~~~G~~-G~g~~~Kl~~N~l~~~~~~a~~Ea~~la~~~Gld~~~~~~~l~~~~~ 209 (292)
T PRK15059 135 VGG---DEAVFERVKPLFELLGKNITLVGGN-GDGQTCKVANQIIVALNIEAVSEALLFASKAGADPVRVRQALMGGFA 209 (292)
T ss_pred EcC---CHHHHHHHHHHHHHHcCCcEEeCCc-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHcCcc
Confidence 555 7999999999999999999999773 42 2344432 234699988866 99998876666 4443
No 139
>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating). This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.
Probab=99.49 E-value=5.5e-13 Score=136.25 Aligned_cols=183 Identities=10% Similarity=0.055 Sum_probs=125.9
Q ss_pred eEEEEcCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc----cCC
Q 007805 310 KVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY----SEF 385 (589)
Q Consensus 310 kI~IIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~----~~~ 385 (589)
+|+|||+|.||.+||..|+++|++|++||+++++.+...+ .|.. ...+. +.+
T Consensus 2 ~Ig~IGlG~mG~~la~~L~~~g~~V~~~dr~~~~~~~l~~-----------~g~~-------------~~~s~~~~~~~~ 57 (298)
T TIGR00872 2 QLGLIGLGRMGANIVRRLAKRGHDCVGYDHDQDAVKAMKE-----------DRTT-------------GVANLRELSQRL 57 (298)
T ss_pred EEEEEcchHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH-----------cCCc-------------ccCCHHHHHhhc
Confidence 7999999999999999999999999999999998776422 2211 11121 345
Q ss_pred CCCCEEEEeccCChHHHHHHHHHHHHhCCCCcEEEecCCCCCHHH--Hhccc-CCCCcEEEecCCCCC---CCCCeeeEe
Q 007805 386 KDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNI--VGEKT-SSQDRIIGAHFFSPA---HVMPLLEIV 459 (589)
Q Consensus 386 ~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~~--~~~~~-~~~~r~ig~h~~~p~---~~~~lveiv 459 (589)
.++|+||.|+|.+ ...+++.++.+.++++.+|++.+++.+.+. +...+ ....+|+..+....+ ..+ +.-++
T Consensus 58 ~~~dvIi~~vp~~--~~~~v~~~l~~~l~~g~ivid~st~~~~~t~~~~~~~~~~g~~~vda~vsGg~~~a~~G-~~~~~ 134 (298)
T TIGR00872 58 SAPRVVWVMVPHG--IVDAVLEELAPTLEKGDIVIDGGNSYYKDSLRRYKLLKEKGIHLLDCGTSGGVWGRERG-YCFMI 134 (298)
T ss_pred CCCCEEEEEcCch--HHHHHHHHHHhhCCCCCEEEECCCCCcccHHHHHHHHHhcCCeEEecCCCCCHHHHhcC-Ceeee
Confidence 6799999999966 567778899999999888887666544332 22222 233345555543222 112 33344
Q ss_pred cCCCCCHHHHHHHHHHHHHcCC---eeEEEcCC-CCc----ccccccHHH---HHHHHHHHHc-C--CCHHHHHHHH
Q 007805 460 RTERTSAQVILDLMTVGKIIKK---VPVVVGNC-TGF----AVNRAFFPY---SQSARLLVSL-G--VDVFRIDSAI 522 (589)
Q Consensus 460 ~~~~t~~e~~~~~~~l~~~lG~---~~v~v~d~-~Gf----i~nRi~~~~---~~Ea~~l~~~-G--v~~~~iD~~~ 522 (589)
.| ++++++.++++++.++. ..+++++. .|. +.|-+.... +.|++.+++. | ++++++-.+|
T Consensus 135 gG---~~~~~~~~~~~l~~~~~~~~~~~~~G~~G~~~~~K~~~n~l~~~~~~~~aE~~~l~~~~g~~ld~~~~~~i~ 208 (298)
T TIGR00872 135 GG---DGEAFARAEPLFADVAPEEQGYLYCGPCGSGHFVKMVHNGIEYGMMAAIAEGFEILRNSQFDFDIPEVARVW 208 (298)
T ss_pred CC---CHHHHHHHHHHHHHhcCcCCCEEEECCccHhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCHHHHHHHH
Confidence 44 79999999999999997 46777653 222 224444333 3499999987 4 5999999998
No 140
>COG0345 ProC Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism]
Probab=99.48 E-value=1.3e-12 Score=128.59 Aligned_cols=182 Identities=15% Similarity=0.134 Sum_probs=143.2
Q ss_pred cceEEEEcCCCCcHHHHHHHHhCC----CeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-
Q 007805 308 VRKVAVIGGGLMGSGIATAHILNN----IYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY- 382 (589)
Q Consensus 308 ~~kI~IIG~G~mG~~iA~~l~~~G----~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~- 382 (589)
++||+|||+|+||.+|+..|.++| .+|++.++++++.+...++ ++... +++.
T Consensus 1 ~~~IgfIG~G~Mg~Ai~~gl~~~g~~~~~~I~v~~~~~e~~~~l~~~----------------------~g~~~-~~~~~ 57 (266)
T COG0345 1 MMKIGFIGAGNMGEAILSGLLKSGALPPEEIIVTNRSEEKRAALAAE----------------------YGVVT-TTDNQ 57 (266)
T ss_pred CceEEEEccCHHHHHHHHHHHhcCCCCcceEEEeCCCHHHHHHHHHH----------------------cCCcc-cCcHH
Confidence 368999999999999999999999 5899999999987643221 11222 3444
Q ss_pred cCCCCCCEEEEeccCChHHHHHHHHHHHHhCCCCcEEEecCCCCCHHHHhcccCCCCcEEEecCCCCCCCCCeeeEe-cC
Q 007805 383 SEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIV-RT 461 (589)
Q Consensus 383 ~~~~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~~~~~~~~~~~r~ig~h~~~p~~~~~lveiv-~~ 461 (589)
+.+.++|+||+||. +....+++.++.+ ..++.+|+|...+++++.+...++ ..+++..+|+.|..++..+..+ .+
T Consensus 58 ~~~~~advv~LavK--Pq~~~~vl~~l~~-~~~~~lvISiaAGv~~~~l~~~l~-~~~vvR~MPNt~a~vg~g~t~i~~~ 133 (266)
T COG0345 58 EAVEEADVVFLAVK--PQDLEEVLSKLKP-LTKDKLVISIAAGVSIETLERLLG-GLRVVRVMPNTPALVGAGVTAISAN 133 (266)
T ss_pred HHHhhCCEEEEEeC--hHhHHHHHHHhhc-ccCCCEEEEEeCCCCHHHHHHHcC-CCceEEeCCChHHHHcCcceeeecC
Confidence 67889999999995 6778889999888 778899999999999999999988 7789999999999888777766 46
Q ss_pred CCCCHHHHHHHHHHHHHcCCeeEEE-----------cCCCCcccccccHHHHHHHH--HHHHcCCCHHHHHHHH
Q 007805 462 ERTSAQVILDLMTVGKIIKKVPVVV-----------GNCTGFAVNRAFFPYSQSAR--LLVSLGVDVFRIDSAI 522 (589)
Q Consensus 462 ~~t~~e~~~~~~~l~~~lG~~~v~v-----------~d~~Gfi~nRi~~~~~~Ea~--~l~~~Gv~~~~iD~~~ 522 (589)
...+++..+.+.++++.+|+...+- +..|.| ..++.|++ .-+..|++.++.-...
T Consensus 134 ~~~~~~~~~~v~~l~~~~G~v~~v~E~~~da~TaisGSgPAy------v~~~iEal~~agv~~Gl~~~~A~~l~ 201 (266)
T COG0345 134 ANVSEEDKAFVEALLSAVGKVVEVEESLMDAVTALSGSGPAY------VFLFIEALADAGVRLGLPREEARELA 201 (266)
T ss_pred ccCCHHHHHHHHHHHHhcCCeEEechHHhhHHHHHhcCCHHH------HHHHHHHHHHHHHHcCCCHHHHHHHH
Confidence 7889999999999999999988764 223332 34455666 4456677776655544
No 141
>PTZ00142 6-phosphogluconate dehydrogenase; Provisional
Probab=99.48 E-value=5.2e-13 Score=143.18 Aligned_cols=190 Identities=13% Similarity=0.100 Sum_probs=129.4
Q ss_pred cceEEEEcCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cCC-
Q 007805 308 VRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEF- 385 (589)
Q Consensus 308 ~~kI~IIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~- 385 (589)
|.+|+|||+|.||++||..|+++||+|++||+++++.+...+... ..|. .+..++++ +.+
T Consensus 1 ~~~IgvIGLG~MG~~lA~nL~~~G~~V~v~dr~~~~~~~l~~~~~-------~~g~-----------~i~~~~s~~e~v~ 62 (470)
T PTZ00142 1 MSDIGLIGLAVMGQNLALNIASRGFKISVYNRTYEKTEEFVKKAK-------EGNT-----------RVKGYHTLEELVN 62 (470)
T ss_pred CCEEEEEeEhHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHhhh-------hcCC-----------cceecCCHHHHHh
Confidence 357999999999999999999999999999999999877533110 0110 12334454 333
Q ss_pred --CCCCEEEEeccCChHHHHHHHHHHHHhCCCCcEEEecCCCCCHHHHhcccCCCCcEEEecCCCCCC--------CCCe
Q 007805 386 --KDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAH--------VMPL 455 (589)
Q Consensus 386 --~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~~~~~~~~~~~r~ig~h~~~p~~--------~~~l 455 (589)
+++|+||.+||... ...+++.++.++++++.||++.+++.+.+.........++ |.||...|. .++
T Consensus 63 ~l~~~d~Iil~v~~~~-~v~~vi~~l~~~L~~g~iIID~gn~~~~dt~~r~~~l~~~--Gi~fldapVSGG~~gA~~G~- 138 (470)
T PTZ00142 63 SLKKPRKVILLIKAGE-AVDETIDNLLPLLEKGDIIIDGGNEWYLNTERRIKRCEEK--GILYLGMGVSGGEEGARYGP- 138 (470)
T ss_pred cCCCCCEEEEEeCChH-HHHHHHHHHHhhCCCCCEEEECCCCCHHHHHHHHHHHHHc--CCeEEcCCCCCCHHHHhcCC-
Confidence 36899999988544 4556778999999999999887776655433222111111 455544332 233
Q ss_pred eeEecCCCCCHHHHHHHHHHHHHcCCe------eEEEcCC-CCc----ccccccHHH---HHHHHHHHH--cCCCHHHHH
Q 007805 456 LEIVRTERTSAQVILDLMTVGKIIKKV------PVVVGNC-TGF----AVNRAFFPY---SQSARLLVS--LGVDVFRID 519 (589)
Q Consensus 456 veiv~~~~t~~e~~~~~~~l~~~lG~~------~v~v~d~-~Gf----i~nRi~~~~---~~Ea~~l~~--~Gv~~~~iD 519 (589)
.-++.| ++++++.++++++.++.+ +.++++. .|. +-|-+.+.+ +.|++.+++ .|++++++-
T Consensus 139 ~lm~GG---~~~a~~~~~piL~~ia~~~~~~~~~~~~G~~GaGh~vKmvhN~ie~~~m~~iaEa~~l~~~~~gl~~~~l~ 215 (470)
T PTZ00142 139 SLMPGG---NKEAYDHVKDILEKCSAKVGDSPCVTYVGPGSSGHYVKMVHNGIEYGDMQLISESYKLMKHILGMSNEELS 215 (470)
T ss_pred EEEEeC---CHHHHHHHHHHHHHHhhhcCCCCeEEEECCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhcCCCHHHHH
Confidence 323444 799999999999999987 5677652 232 335555443 459999986 589999987
Q ss_pred HHH
Q 007805 520 SAI 522 (589)
Q Consensus 520 ~~~ 522 (589)
.++
T Consensus 216 ~v~ 218 (470)
T PTZ00142 216 EVF 218 (470)
T ss_pred HHH
Confidence 776
No 142
>cd07022 S49_Sppa_36K_type Signal peptide peptidase A (SppA) 36K type, a serine protease, has catalytic Ser-Lys dyad. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV) 36K type: SppA is found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Members in this subfamily are all bacterial and include sohB peptidase and protein C. These are sometimes referred to as 36K type since they contain only one domain, unlike E. coli SppA that also contains an amino-terminal domain. Site-directed mutagenesis and sequence analysis have shown these SppAs to be serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad and not the usual Ser-His-Asp catalytic triad found in the majority of serine proteases.
Probab=99.47 E-value=3.8e-13 Score=130.54 Aligned_cols=154 Identities=27% Similarity=0.313 Sum_probs=105.9
Q ss_pred EEEEEeC-----CCC-CCC-CCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCCcCCCCchhhhhccCCCcccccchhHH
Q 007805 15 VAIITLI-----NPP-VNA-LAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSV 87 (589)
Q Consensus 15 v~~i~l~-----~p~-~N~-l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~ 87 (589)
|++|.++ +|. .|+ ++..++.+|.++++.++.|+++++|||+. +|.|+++....
T Consensus 2 v~vi~~~g~i~~~~~~~~~~~~~~~~~~l~~~l~~a~~d~~i~~Vvl~~----~s~gg~~~~~~---------------- 61 (214)
T cd07022 2 VAVIPVHGVLVPRGSWLEASSGLTSYEGIAAAIRAALADPDVRAIVLDI----DSPGGEVAGVF---------------- 61 (214)
T ss_pred EEEEEEEEEEeCCCCcccCCCCcccHHHHHHHHHHHhhCCCCcEEEEEE----eCCCCcHHHHH----------------
Confidence 4555554 333 354 46789999999999999999999999975 56666654321
Q ss_pred HHHHHHHHhC--CCcEEEEeCCcccchhhHHhhhcCEEEEeCCceEeccccc------------cCCCCCh---------
Q 007805 88 ELVVNLIEDC--KKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELT------------LGVIPGF--------- 144 (589)
Q Consensus 88 ~~~~~~l~~~--~kp~iaav~G~a~GgG~~lala~D~~ia~~~a~~~~pe~~------------~Gl~p~~--------- 144 (589)
.+. +.+..+ +|||||+++|.|.|+|+.|+++||++++++++.|+..-+. +|+-+..
T Consensus 62 ~l~-~~l~~~~~~KpViA~v~g~a~s~gy~lA~~aD~i~a~~~a~~g~iG~~~~~~~~~~ll~k~Gi~~~~~~~g~~K~~ 140 (214)
T cd07022 62 ELA-DAIRAARAGKPIVAFVNGLAASAAYWIASAADRIVVTPTAGVGSIGVVASHVDQSKALEKAGLKVTLIFAGAHKVD 140 (214)
T ss_pred HHH-HHHHHHhcCCCEEEEECCchhhHHHHHHhcCCEEEEcCCCeEEeeeEEEecCCHHHHHHhCCCeEEEEEcCCCccC
Confidence 112 334444 5999999999999999999999999999999987654332 2221110
Q ss_pred h-----hh----hhH-----------------hhhcCHHHHHHHHHcCCCCCHHHHHHcCCcceecCchHHHH
Q 007805 145 G-----GT----QRL-----------------PRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLK 191 (589)
Q Consensus 145 g-----~~----~~l-----------------~~~~G~~~a~~l~ltg~~~~a~~A~~~Glv~~vv~~~~l~~ 191 (589)
+ .+ ..+ .|.+......+++ |+.+++++|++.||||++...+++..
T Consensus 141 ~~~~~~~s~~~re~~~~~l~~~~~~f~~~V~~~R~~~~~~~~~~~--~~~~~~~~Al~~gLvD~i~~~~~~~~ 211 (214)
T cd07022 141 GNPDEPLSDEARARLQAEVDALYAMFVAAVARNRGLSAAAVRATE--GGVFRGQEAVAAGLADAVGTLDDALA 211 (214)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHhh--cCeeeHHHHHHcCCCcccCCHHHHHH
Confidence 0 00 000 1222334444555 99999999999999999987776543
No 143
>PRK06928 pyrroline-5-carboxylate reductase; Reviewed
Probab=99.47 E-value=1.9e-12 Score=130.76 Aligned_cols=153 Identities=14% Similarity=0.051 Sum_probs=121.9
Q ss_pred cceEEEEcCCCCcHHHHHHHHhCC----CeEEEEeCChHH-HHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc
Q 007805 308 VRKVAVIGGGLMGSGIATAHILNN----IYVVLKEVNSEY-LLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY 382 (589)
Q Consensus 308 ~~kI~IIG~G~mG~~iA~~l~~~G----~~V~~~d~~~~~-~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~ 382 (589)
|++|+|||+|.||++|+..|.++| ++|++|+++++. .+.... . ......+.+.
T Consensus 1 m~~I~iIG~G~mG~ala~~L~~~g~~~~~~V~~~~r~~~~~~~~l~~-----------~-----------~~~~~~~~~~ 58 (277)
T PRK06928 1 MEKIGFIGYGSMADMIATKLLETEVATPEEIILYSSSKNEHFNQLYD-----------K-----------YPTVELADNE 58 (277)
T ss_pred CCEEEEECccHHHHHHHHHHHHCCCCCcccEEEEeCCcHHHHHHHHH-----------H-----------cCCeEEeCCH
Confidence 468999999999999999999998 789999987532 222110 0 0112233444
Q ss_pred -cCCCCCCEEEEeccCChHHHHHHHHHHHHhCCCCcEEEecCCCCCHHHHhcccCCCCcEEEecCCCCCCCCCeeeEe-c
Q 007805 383 -SEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIV-R 460 (589)
Q Consensus 383 -~~~~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~~~~~~~~~~~r~ig~h~~~p~~~~~lveiv-~ 460 (589)
+.++++|+||+|+| ++...+++.++.++++++++|+|...+++++++...++. .+++..+|+.|..++..+..+ .
T Consensus 59 ~e~~~~aDvVilavp--p~~~~~vl~~l~~~l~~~~~ivS~~aGi~~~~l~~~~~~-~~vvR~MPN~~~~~g~g~t~~~~ 135 (277)
T PRK06928 59 AEIFTKCDHSFICVP--PLAVLPLLKDCAPVLTPDRHVVSIAAGVSLDDLLEITPG-LQVSRLIPSLTSAVGVGTSLVAH 135 (277)
T ss_pred HHHHhhCCEEEEecC--HHHHHHHHHHHHhhcCCCCEEEEECCCCCHHHHHHHcCC-CCEEEEeCccHHHHhhhcEEEec
Confidence 56789999999998 666778999999888888889999999999999887753 489999999999888777666 5
Q ss_pred CCCCCHHHHHHHHHHHHHcCCeeEE
Q 007805 461 TERTSAQVILDLMTVGKIIKKVPVV 485 (589)
Q Consensus 461 ~~~t~~e~~~~~~~l~~~lG~~~v~ 485 (589)
++..+++..+.++.+++.+|+...+
T Consensus 136 ~~~~~~~~~~~v~~l~~~~G~~~~v 160 (277)
T PRK06928 136 AETVNEANKSRLEETLSHFSHVMTI 160 (277)
T ss_pred CCCCCHHHHHHHHHHHHhCCCEEEE
Confidence 6678999999999999999998865
No 144
>cd00394 Clp_protease_like Caseinolytic protease (ClpP) is an ATP-dependent protease. Clp protease (caseinolytic protease; ClpP; endopeptidase Clp; Peptidase S14; ATP-dependent protease, ClpAP)-like enzymes are highly conserved serine proteases and belong to the ClpP/Crotonase superfamily. Included in this family are Clp proteases that are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. They are also implicated in the control of cell growth, targeting DNA-binding protein from starved cells. The functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which are required for effective levels of protease activity in the presence of ATP. Active site consists of the triad Ser, His and Asp, preferring hydrophobic or non-polar residues at P1 or P1' positions. The protease exists as a tetradec
Probab=99.46 E-value=4.1e-13 Score=124.59 Aligned_cols=135 Identities=25% Similarity=0.268 Sum_probs=105.8
Q ss_pred CCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCCcCCCCchhhhhccCCCcccccchhHHHHHHHHHHhCCCcEEEEeCC
Q 007805 28 LAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEG 107 (589)
Q Consensus 28 l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kp~iaav~G 107 (589)
+++.++++|.+.++.++.|+++++|+|.. .|.|+|+... ..+. +.+..++||+|+.++|
T Consensus 8 I~~~~~~~l~~~l~~a~~d~~~~~ivl~~----~s~Gg~~~~~----------------~~i~-~~l~~~~kpvva~~~g 66 (161)
T cd00394 8 IEDVSADQLAAQIRFAEADNSVKAIVLEV----NTPGGRVDAG----------------MNIV-DALQASRKPVIAYVGG 66 (161)
T ss_pred EccchHHHHHHHHHHHHhCCCCceEEEEE----ECCCcCHHHH----------------HHHH-HHHHHhCCCEEEEECC
Confidence 56688999999999999999999999975 4667765432 2344 5677889999999999
Q ss_pred cccchhhHHhhhcCEEEEeCCceEeccccccCCCCChhhh-------------hhHh------hhcCHHHHHHHHHcCCC
Q 007805 108 LALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGT-------------QRLP------RLVGLSKAIEMMLLSKS 168 (589)
Q Consensus 108 ~a~GgG~~lala~D~~ia~~~a~~~~pe~~~Gl~p~~g~~-------------~~l~------~~~G~~~a~~l~ltg~~ 168 (589)
.|.++|+.|+++||.|++.+++.|++.....+.....+-. ..+. |.+......+++..|..
T Consensus 67 ~~~s~g~~la~~~d~~~~~~~a~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~~r~~~~~~~~~~~~~~~~ 146 (161)
T cd00394 67 QAASAGYYIATAANKIVMAPGTRVGSHGPIGGYGGNGNPTAQEADQRIILYFIARFISLVAENRGQTTEKLEEDIEKDLV 146 (161)
T ss_pred hhHHHHHHHHhCCCEEEECCCCEEEEeeeEEecCCCCChHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHhcCCcE
Confidence 9999999999999999999999999988876653321000 1111 22244456788889999
Q ss_pred CCHHHHHHcCCccee
Q 007805 169 ITSEEGWKLGLIDAV 183 (589)
Q Consensus 169 ~~a~~A~~~Glv~~v 183 (589)
++++||+++||||++
T Consensus 147 ~~a~eA~~~GLvD~i 161 (161)
T cd00394 147 LTAQEALEYGLVDAL 161 (161)
T ss_pred EcHHHHHHcCCcCcC
Confidence 999999999999975
No 145
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=99.45 E-value=2.3e-12 Score=137.29 Aligned_cols=197 Identities=14% Similarity=0.141 Sum_probs=126.2
Q ss_pred ccceEEEEcCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHH--------HHHHHHhhHhcCCCCHHHHHHHhhcccc
Q 007805 307 GVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKT--------IEANVRGLVTRGKLTQDKANNALKMLKG 378 (589)
Q Consensus 307 ~~~kI~IIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~--------~~~~~~~~~~~g~~~~~~~~~~~~~i~~ 378 (589)
.++||+|||+|.||.++|..|+++||+|++||+++++++..... +...+.+.++. +++.+
T Consensus 2 ~~~kI~VIGlG~~G~~~A~~La~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~l~~~~~~------------g~l~~ 69 (415)
T PRK11064 2 SFETISVIGLGYIGLPTAAAFASRQKQVIGVDINQHAVDTINRGEIHIVEPDLDMVVKTAVEG------------GYLRA 69 (415)
T ss_pred CccEEEEECcchhhHHHHHHHHhCCCEEEEEeCCHHHHHHHHCCCCCcCCCCHHHHHHHHhhc------------Cceee
Confidence 46899999999999999999999999999999999988763210 11111111111 33444
Q ss_pred cCCccCCCCCCEEEEeccCC--------hHHHHHHHHHHHHhCCCCcEEEecCCCCC--HHHHhcccCC-------C---
Q 007805 379 VLDYSEFKDVDMVIEAVIES--------VPLKQKIFSELEKACPPHCILATNTSTID--LNIVGEKTSS-------Q--- 438 (589)
Q Consensus 379 ~~~~~~~~~aDlVIeavpe~--------~~~k~~v~~~l~~~~~~~~ii~s~ts~~~--~~~~~~~~~~-------~--- 438 (589)
+++ +++||+||.|||.. ........+.+.++++++++|+..|+..+ ...+...+.. |
T Consensus 70 ~~~---~~~aDvvii~vptp~~~~~~~dl~~v~~~~~~i~~~l~~g~iVI~~STv~pgtt~~~~~~l~~~~~~~~~~~~~ 146 (415)
T PRK11064 70 TTT---PEPADAFLIAVPTPFKGDHEPDLTYVEAAAKSIAPVLKKGDLVILESTSPVGATEQMAEWLAEARPDLTFPQQA 146 (415)
T ss_pred ecc---cccCCEEEEEcCCCCCCCCCcChHHHHHHHHHHHHhCCCCCEEEEeCCCCCCHHHHHHHHHHHhccCCcccccc
Confidence 443 45899999999974 35566677889999999988764433222 2222221110 0
Q ss_pred ---CcEEEecCCCCC--CCCCee-------eEecCCCCCHHHHHHHHHHHHHcCCeeEEEcCCC-----Cccccccc---
Q 007805 439 ---DRIIGAHFFSPA--HVMPLL-------EIVRTERTSAQVILDLMTVGKIIKKVPVVVGNCT-----GFAVNRAF--- 498 (589)
Q Consensus 439 ---~r~ig~h~~~p~--~~~~lv-------eiv~~~~t~~e~~~~~~~l~~~lG~~~v~v~d~~-----Gfi~nRi~--- 498 (589)
..|--. ++|- .-+..+ -++.| .+++..+.++++++.++..++++.+.. .++.|-++
T Consensus 147 g~~~~f~v~--~~PE~~~~G~~~~~~~~~~~vvgG--~~~~~~~~~~~ly~~~~~~~~~~~~~~~Ae~~Kl~~N~~~a~~ 222 (415)
T PRK11064 147 GEQADINIA--YCPERVLPGQVMVELIKNDRVIGG--MTPVCSARASELYKIFLEGECVVTNSRTAEMCKLTENSFRDVN 222 (415)
T ss_pred cCCCCeEEE--ECCCccCCCChhhhhcCCCEEEEe--CCHHHHHHHHHHHHHhcCCCeeeCCHHHHHHHHHHHHHHHHHH
Confidence 011011 2231 111111 34544 478999999999999998877775411 23445543
Q ss_pred HHHHHHHHHHHHc-CCCHHHHHHHH
Q 007805 499 FPYSQSARLLVSL-GVDVFRIDSAI 522 (589)
Q Consensus 499 ~~~~~Ea~~l~~~-Gv~~~~iD~~~ 522 (589)
.+++||+..+.+. |+++.++=.++
T Consensus 223 ia~~nE~~~lae~~GiD~~~v~~~~ 247 (415)
T PRK11064 223 IAFANELSLICADQGINVWELIRLA 247 (415)
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHh
Confidence 5678999988877 99999886666
No 146
>TIGR00705 SppA_67K signal peptide peptidase SppA, 67K type. E. coli SohB, which is most closely homologous to the C-terminal duplication of SppA, is predicted to perform a similar function of small peptide degradation, but in the periplasm. Many prokaryotes have a single SppA/SohB homolog that may perform the function of either or both.
Probab=99.45 E-value=3.9e-13 Score=148.20 Aligned_cols=175 Identities=21% Similarity=0.218 Sum_probs=133.7
Q ss_pred cCcEEEEEeCCC--C-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCCcCCCCchhhhhccCCCcccccchhHHH
Q 007805 12 NDGVAIITLINP--P-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVE 88 (589)
Q Consensus 12 ~~~v~~i~l~~p--~-~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~ 88 (589)
++.|++|+++.+ + .|..+....+.+.+.++.+..|++||+|||+-..+ |++.... ....+
T Consensus 307 ~~~vavI~~~G~I~~~~~~~~~~~~~~~~~~l~~a~~D~~VkaIVLrinSp----GGs~~as-------------e~i~~ 369 (584)
T TIGR00705 307 QDKIGIVHLEGPIADGRDTEGNTGGDTVAALLRVARSDPDIKAVVLRINSP----GGSVFAS-------------EIIRR 369 (584)
T ss_pred CCeEEEEEEEEEEcCCCCcccccCHHHHHHHHHHHhhCCCceEEEEEecCC----CCCHHHH-------------HHHHH
Confidence 578999999987 2 35455555678889999999999999999985421 2221110 01112
Q ss_pred HHHHHHHhCCCcEEEEeCCcccchhhHHhhhcCEEEEeCCceE------eccc------cccCCCCChhhhhhHhh----
Q 007805 89 LVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQL------GLPE------LTLGVIPGFGGTQRLPR---- 152 (589)
Q Consensus 89 ~~~~~l~~~~kp~iaav~G~a~GgG~~lala~D~~ia~~~a~~------~~pe------~~~Gl~p~~g~~~~l~~---- 152 (589)
.+ ..++..+||||+.++|.|.+||+.++++||.++|++.+.+ +.+. .++|+.|+...+..+..
T Consensus 370 ~i-~~~~~~gKPVva~~~g~aaSggY~iA~aaD~I~a~p~t~~GSIGv~~~~~~~~~~l~klGi~~~~~~t~~~~~~s~~ 448 (584)
T TIGR00705 370 EL-ARAQARGKPVIVSMGAMAASGGYWIASAADYIVASPNTITGSIGVFSVLPTFENSLDRIGVHVDGVSTHELANVSLL 448 (584)
T ss_pred HH-HHHHhCCCcEEEEECCccccHHHHHHHhCCEEEECCCCeeecCEEEEEccCHHHHHHhcCCceEEEeccCcCCCCCC
Confidence 33 3466788999999999999999999999999999999876 5553 58999988777665554
Q ss_pred ------------------------hcCHHH-----HHHHHHcCCCCCHHHHHHcCCcceecCchHHHHHHHHHHHHHHhc
Q 007805 153 ------------------------LVGLSK-----AIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAAR 203 (589)
Q Consensus 153 ------------------------~~G~~~-----a~~l~ltg~~~~a~~A~~~Glv~~vv~~~~l~~~a~~~a~~la~~ 203 (589)
.++..+ +.+.+.+|+.+++++|+++||||++- .+ ++|.+.|.+++..
T Consensus 449 ~~~t~~~~~~~~~~l~~~y~~F~~~Va~~R~l~~e~v~~ia~Grv~tg~eA~~~GLVD~ig---~~-~~Ai~~a~~la~~ 524 (584)
T TIGR00705 449 RPLTAEDQAIMQLSVEAGYRRFLSVVSAGRNLTPTQVDKVAQGRVWTGEDAVSNGLVDALG---GL-DEAVAKAAKLAHC 524 (584)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHhCCCcCHHHHHHcCCcccCC---CH-HHHHHHHHHHcCC
Confidence 666666 78899999999999999999999994 33 7788888888887
Q ss_pred -Chhhh
Q 007805 204 -RKPWI 208 (589)
Q Consensus 204 -~~~~~ 208 (589)
++..+
T Consensus 525 ~~~~~v 530 (584)
T TIGR00705 525 REQWSV 530 (584)
T ss_pred CCCceE
Confidence 44433
No 147
>PRK12490 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=99.45 E-value=1e-12 Score=134.41 Aligned_cols=184 Identities=16% Similarity=0.065 Sum_probs=121.5
Q ss_pred eEEEEcCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cCCC--
Q 007805 310 KVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFK-- 386 (589)
Q Consensus 310 kI~IIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~-- 386 (589)
+|+|||+|.||.+||..|+++|++|++||+++++.+... +.| .....+. +.++
T Consensus 2 ~Ig~IGlG~mG~~mA~~L~~~g~~v~v~dr~~~~~~~~~-----------~~g-------------~~~~~s~~~~~~~~ 57 (299)
T PRK12490 2 KLGLIGLGKMGGNMAERLREDGHEVVGYDVNQEAVDVAG-----------KLG-------------ITARHSLEELVSKL 57 (299)
T ss_pred EEEEEcccHHHHHHHHHHHhCCCEEEEEECCHHHHHHHH-----------HCC-------------CeecCCHHHHHHhC
Confidence 799999999999999999999999999999998776531 112 1223333 3333
Q ss_pred -CCCEEEEeccCChHHHHHHHHHHHHhCCCCcEEEecCCCCCH--HHHhcccC-CCCcEEEecCCCCC---CCCCeeeEe
Q 007805 387 -DVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDL--NIVGEKTS-SQDRIIGAHFFSPA---HVMPLLEIV 459 (589)
Q Consensus 387 -~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~--~~~~~~~~-~~~r~ig~h~~~p~---~~~~lveiv 459 (589)
++|+||.|+|.+.. .++++.++.+.++++.+|++.+++.+. .++.+.+. +..+|+-..-...+ ..+ ..-++
T Consensus 58 ~~advVi~~vp~~~~-~~~v~~~i~~~l~~g~ivid~st~~~~~~~~~~~~~~~~g~~~vdapV~G~~~~a~~g-~~~~~ 135 (299)
T PRK12490 58 EAPRTIWVMVPAGEV-TESVIKDLYPLLSPGDIVVDGGNSRYKDDLRRAEELAERGIHYVDCGTSGGVWGLRNG-YCLMV 135 (299)
T ss_pred CCCCEEEEEecCchH-HHHHHHHHhccCCCCCEEEECCCCCchhHHHHHHHHHHcCCeEEeCCCCCCHHHHhcC-CeEEe
Confidence 37999999996644 455667888888888888765444332 23333332 22233332222111 111 12344
Q ss_pred cCCCCCHHHHHHHHHHHHHcCC---eeEEEcCCCC------cccccccHH---HHHHHHHHHHc-C--CCHHHHHHHHH
Q 007805 460 RTERTSAQVILDLMTVGKIIKK---VPVVVGNCTG------FAVNRAFFP---YSQSARLLVSL-G--VDVFRIDSAIR 523 (589)
Q Consensus 460 ~~~~t~~e~~~~~~~l~~~lG~---~~v~v~d~~G------fi~nRi~~~---~~~Ea~~l~~~-G--v~~~~iD~~~~ 523 (589)
.| +++++++++++++.+|. +++++++ +| .+.|-+... .+.||+.+.++ | ++++++=.+|.
T Consensus 136 gG---~~~~~~~~~~~l~~~~~~~~~~~~~G~-~g~a~~~Kl~~n~~~~~~~~~~aEa~~l~~~~g~~ld~~~~~~~~~ 210 (299)
T PRK12490 136 GG---DKEIYDRLEPVFKALAPEGPGYVHAGP-VGSGHFLKMVHNGIEYGMMQAYAEGLELLDKSDFDFDVEDVARLWR 210 (299)
T ss_pred cC---CHHHHHHHHHHHHHhcCcCCcEEEECC-cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCHHHHHHHHc
Confidence 45 78999999999999997 7888876 34 222333332 33599999986 7 89988888873
No 148
>PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=99.44 E-value=9.9e-13 Score=134.67 Aligned_cols=182 Identities=16% Similarity=0.133 Sum_probs=122.1
Q ss_pred eEEEEcCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cCCC--
Q 007805 310 KVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFK-- 386 (589)
Q Consensus 310 kI~IIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~-- 386 (589)
+|+|||+|.||.+||..|+++|++|++||+++++.+... +.| ....+++ +.++
T Consensus 2 ~Ig~IGlG~MG~~mA~~L~~~g~~v~v~dr~~~~~~~~~-----------~~g-------------~~~~~~~~e~~~~~ 57 (301)
T PRK09599 2 QLGMIGLGRMGGNMARRLLRGGHEVVGYDRNPEAVEALA-----------EEG-------------ATGADSLEELVAKL 57 (301)
T ss_pred EEEEEcccHHHHHHHHHHHHCCCeEEEEECCHHHHHHHH-----------HCC-------------CeecCCHHHHHhhc
Confidence 799999999999999999999999999999998876642 122 1223333 2233
Q ss_pred -CCCEEEEeccCChHHHHHHHHHHHHhCCCCcEEEecCCCCCHH--HHhcccCCCCcEEEecCCCCCCCC-------Cee
Q 007805 387 -DVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLN--IVGEKTSSQDRIIGAHFFSPAHVM-------PLL 456 (589)
Q Consensus 387 -~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~--~~~~~~~~~~r~ig~h~~~p~~~~-------~lv 456 (589)
++|+||.++|.+.. ..+++..+.+.++++.++++.+++.+.. .+...+... |.+|.+.|..+ .+.
T Consensus 58 ~~~dvvi~~v~~~~~-~~~v~~~l~~~l~~g~ivid~st~~~~~~~~~~~~~~~~----g~~~~dapvsG~~~~a~~g~~ 132 (301)
T PRK09599 58 PAPRVVWLMVPAGEI-TDATIDELAPLLSPGDIVIDGGNSYYKDDIRRAELLAEK----GIHFVDVGTSGGVWGLERGYC 132 (301)
T ss_pred CCCCEEEEEecCCcH-HHHHHHHHHhhCCCCCEEEeCCCCChhHHHHHHHHHHHc----CCEEEeCCCCcCHHHHhcCCe
Confidence 47999999996544 3456678888888888887665544432 233333211 33443322111 122
Q ss_pred eEecCCCCCHHHHHHHHHHHHHcCC----eeEEEcCCC-Cc----ccccccHHH---HHHHHHHHH---cCCCHHHHHHH
Q 007805 457 EIVRTERTSAQVILDLMTVGKIIKK----VPVVVGNCT-GF----AVNRAFFPY---SQSARLLVS---LGVDVFRIDSA 521 (589)
Q Consensus 457 eiv~~~~t~~e~~~~~~~l~~~lG~----~~v~v~d~~-Gf----i~nRi~~~~---~~Ea~~l~~---~Gv~~~~iD~~ 521 (589)
-++.| ++++++.++++++.+++ +++++++.. |. +.|-+.+.. +.|++.+.+ .|++++++-.+
T Consensus 133 ~~~gG---~~~~~~~~~~~l~~~~~~~~~~~~~~G~~G~g~~~Kl~~n~l~~~~~~~~aEa~~l~~~~~~gld~~~~~~~ 209 (301)
T PRK09599 133 LMIGG---DKEAVERLEPIFKALAPRAEDGYLHAGPVGAGHFVKMVHNGIEYGMMQAYAEGFELLEASRFDLDLAAVAEV 209 (301)
T ss_pred EEecC---CHHHHHHHHHHHHHHcccccCCeEeECCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 23344 89999999999999999 788887632 22 223343332 359999987 47899999988
Q ss_pred HH
Q 007805 522 IR 523 (589)
Q Consensus 522 ~~ 523 (589)
|.
T Consensus 210 ~~ 211 (301)
T PRK09599 210 WR 211 (301)
T ss_pred Hh
Confidence 84
No 149
>cd07023 S49_Sppa_N_C Signal peptide peptidase A (SppA), a serine protease, has catalytic Ser-Lys dyad. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV): SppA is found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. This subfamily contains members with either a single domain (sometimes referred to as 36K type), such as sohB peptidase, protein C and archaeal signal peptide peptidase, or an amino-terminal domain in addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members (sometimes referred to as 67K type), similar to E. coli and Arabidopsis thaliana SppA peptidases. Site-directed mutagenesis and sequence analysis have shown these SppAs to be serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad
Probab=99.42 E-value=1.3e-12 Score=126.42 Aligned_cols=155 Identities=22% Similarity=0.263 Sum_probs=109.3
Q ss_pred EEEEEeCCC-CCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCCcCCCCchhhhhccCCCcccccchhHHHHHHHH
Q 007805 15 VAIITLINP-PVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNL 93 (589)
Q Consensus 15 v~~i~l~~p-~~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (589)
|++|.++.+ ... .+.++.+|.++++.++.|+++++|+|++ +|.|+|+.... ...+.+ +.
T Consensus 2 v~vi~i~g~i~~~--~~~~~~~l~~~l~~a~~d~~i~~ivl~~----~s~Gg~~~~~~-------------~i~~~i-~~ 61 (208)
T cd07023 2 IAVIDIEGTISDG--GGIGADSLIEQLRKAREDDSVKAVVLRI----NSPGGSVVASE-------------EIYREI-RR 61 (208)
T ss_pred EEEEEEEEEEcCC--CCCCHHHHHHHHHHHHhCCCCcEEEEEE----ECCCCCHHHHH-------------HHHHHH-HH
Confidence 566666654 111 3789999999999999999999999988 47899886521 112344 56
Q ss_pred HHhCCCcEEEEeCCcccchhhHHhhhcCEEEEeCCceEeccccc------------cCCCCChhh---------------
Q 007805 94 IEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELT------------LGVIPGFGG--------------- 146 (589)
Q Consensus 94 l~~~~kp~iaav~G~a~GgG~~lala~D~~ia~~~a~~~~pe~~------------~Gl~p~~g~--------------- 146 (589)
+..++||+||+++|.|.|+|+.|+++||++++++++.|+..-+. +|+-+..-.
T Consensus 62 ~~~~~kpvia~v~g~~~s~g~~lA~aaD~i~a~~~s~~g~iG~~~~~~~~~~~l~k~Gi~~~~~~~g~~K~~~~~~~~~s 141 (208)
T cd07023 62 LRKAKKPVVASMGDVAASGGYYIAAAADKIVANPTTITGSIGVIGQGPNLEELLDKLGIERDTIKSGPGKDKGSPDRPLT 141 (208)
T ss_pred HHhcCCcEEEEECCcchhHHHHHHhhCCEEEECCCCeEEeCcEEEecCCHHHHHHhcCCceEEEecCCCccCCCCCCCCC
Confidence 78889999999999999999999999999999999988533221 333221110
Q ss_pred ---hhhH-----------------hhhcCHHHHHHHHHcCCCCCHHHHHHcCCcceecCchHHH
Q 007805 147 ---TQRL-----------------PRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELL 190 (589)
Q Consensus 147 ---~~~l-----------------~~~~G~~~a~~l~ltg~~~~a~~A~~~Glv~~vv~~~~l~ 190 (589)
...+ .|.+.... .+-++.|..+++++|++.||||++...++..
T Consensus 142 ~~~~e~~~~~l~~~~~~f~~~Va~~R~~~~~~-~~~~~~~~~~~a~~A~~~gLiD~i~~~~~~~ 204 (208)
T cd07023 142 EEERAILQALVDDIYDQFVDVVAEGRGMSGER-LDKLADGRVWTGRQALELGLVDELGGLDDAI 204 (208)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHH-HHHhcCCcEEEHHHHHHcCCCcccCCHHHHH
Confidence 0001 11111122 2335688999999999999999998666544
No 150
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=99.42 E-value=1.7e-12 Score=138.70 Aligned_cols=203 Identities=19% Similarity=0.142 Sum_probs=129.9
Q ss_pred eEEEEcCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHH--hhcccccCCc-cCCC
Q 007805 310 KVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNA--LKMLKGVLDY-SEFK 386 (589)
Q Consensus 310 kI~IIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~--~~~i~~~~~~-~~~~ 386 (589)
||+|||+|.||.++|..|+++||+|++||+++++++...+.... ..+. .+. +..... .++++.++++ ++++
T Consensus 2 kI~vIGlG~~G~~lA~~La~~G~~V~~~d~~~~~v~~l~~g~~~----~~e~-~l~-~~~~~~~~~g~l~~~~~~~~~~~ 75 (411)
T TIGR03026 2 KIAVIGLGYVGLPLAALLADLGHEVTGVDIDQEKVDKLNKGKSP----IYEP-GLD-ELLAKALAAGRLRATTDYEDAIR 75 (411)
T ss_pred EEEEECCCchhHHHHHHHHhcCCeEEEEECCHHHHHHhhcCCCC----CCCC-CHH-HHHHHhhhcCCeEEECCHHHHHh
Confidence 79999999999999999999999999999999988764321000 0000 000 000000 1346667777 5689
Q ss_pred CCCEEEEeccCCh--------HHHHHHHHHHHHhCCCCcEEEecCCCCCHH---HHh-cccCC-------CCcEEEecCC
Q 007805 387 DVDMVIEAVIESV--------PLKQKIFSELEKACPPHCILATNTSTIDLN---IVG-EKTSS-------QDRIIGAHFF 447 (589)
Q Consensus 387 ~aDlVIeavpe~~--------~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~---~~~-~~~~~-------~~r~ig~h~~ 447 (589)
+||+||+|||... .....+...+.++++++++|+.. |++++. ++. ..... ..-.+..+|-
T Consensus 76 ~advvii~vpt~~~~~~~~d~~~v~~~~~~i~~~l~~g~lvi~~-STv~pgt~~~l~~~~~~~~~g~~~~~d~~v~~~Pe 154 (411)
T TIGR03026 76 DADVIIICVPTPLKEDGSPDLSYVESAAETIAKHLRKGATVVLE-STVPPGTTEEVVKPILERASGLKLGEDFYLAYNPE 154 (411)
T ss_pred hCCEEEEEeCCCCCCCCCcChHHHHHHHHHHHHhcCCCCEEEEe-CcCCCCchHHHHHHHHHhhcCCCCCCCceEEECCC
Confidence 9999999999764 24566678888888999887643 344332 232 11111 1112444442
Q ss_pred CCCCCCCe-------eeEecCCCCCHHHHHHHHHHHHHcC-CeeEEEcCCC-----Cccccccc---HHHHHHHHHHHHc
Q 007805 448 SPAHVMPL-------LEIVRTERTSAQVILDLMTVGKIIK-KVPVVVGNCT-----GFAVNRAF---FPYSQSARLLVSL 511 (589)
Q Consensus 448 ~p~~~~~l-------veiv~~~~t~~e~~~~~~~l~~~lG-~~~v~v~d~~-----Gfi~nRi~---~~~~~Ea~~l~~~ 511 (589)
.. ..+.. ..++.| .+++..+.++++++.++ +.++++.+.. .++.|-+. .+++||+..+.+.
T Consensus 155 ~~-~~G~~~~~~~~~~~iv~G--~~~~~~~~~~~l~~~~~~~~~~~~~~~~~Ae~~Kl~~N~~~a~~ia~~nE~~~la~~ 231 (411)
T TIGR03026 155 FL-REGNAVHDLLNPDRIVGG--ETEEAGEAVAELYAPIIEDGPVLVTSIETAEMIKLAENTFRAVKIAFANELARICEA 231 (411)
T ss_pred cC-CCCChhhhhcCCCEEEEe--CCHHHHHHHHHHHHHhccCCCEEcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11 11111 024444 48999999999999998 5777775422 23334442 5678999999877
Q ss_pred -CCCHHHHHHHH
Q 007805 512 -GVDVFRIDSAI 522 (589)
Q Consensus 512 -Gv~~~~iD~~~ 522 (589)
|++++++-.++
T Consensus 232 ~GiD~~~v~~~~ 243 (411)
T TIGR03026 232 LGIDVYEVIEAA 243 (411)
T ss_pred hCCCHHHHHHHh
Confidence 99999988877
No 151
>cd07016 S14_ClpP_1 Caseinolytic protease (ClpP) is an ATP-dependent, highly conserved serine protease. Clp protease (caseinolytic protease; ClpP; Peptidase S14) is a highly conserved serine protease present throughout in bacteria and eukaryota, but seems to be absent in archaea, mollicutes and some fungi. This subfamily only contains bacterial sequences. Clp proteases are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. They are also implicated in the control of cell growth, targeting DNA-binding protein from starved cells. ClpP has also been linked to the tight regulation of virulence genes in the pathogens Listeria monocytogenes and Salmonella typhimurium. This enzyme belong to the family of ATP-dependent proteases; the functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which a
Probab=99.40 E-value=1.1e-12 Score=121.48 Aligned_cols=129 Identities=18% Similarity=0.284 Sum_probs=99.1
Q ss_pred HHHHHHHHHHHHHhcCCCceEEEEEcCCCCCcCCCCchhhhhccCCCcccccchhHHHHHHHHHHhCCCcEEEEeCCccc
Q 007805 31 PIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLAL 110 (589)
Q Consensus 31 ~~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kp~iaav~G~a~ 110 (589)
.+...+.+.|+.+..+..+ .+.|.+.|+ ++.. ...++ +.++.++||+|+.++|.|.
T Consensus 15 ~~~~~~~~~l~~~~~~~~i-~l~inspGG------~~~~----------------~~~i~-~~i~~~~~pvi~~v~g~a~ 70 (160)
T cd07016 15 VTAKEFKDALDALGDDSDI-TVRINSPGG------DVFA----------------GLAIY-NALKRHKGKVTVKIDGLAA 70 (160)
T ss_pred cCHHHHHHHHHhccCCCCE-EEEEECCCC------CHHH----------------HHHHH-HHHHhcCCCEEEEEcchHH
Confidence 5677888889988877443 344454443 2211 12445 6688899999999999999
Q ss_pred chhhHHhhhcCEEEEeCCceEeccccccCCCCChh---------------hhhhHhhhcC--HHHHHHHHHcCCCCCHHH
Q 007805 111 GGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFG---------------GTQRLPRLVG--LSKAIEMMLLSKSITSEE 173 (589)
Q Consensus 111 GgG~~lala~D~~ia~~~a~~~~pe~~~Gl~p~~g---------------~~~~l~~~~G--~~~a~~l~ltg~~~~a~~ 173 (589)
|+|+.++++||+|+++++++|+++....+..+... ....+.+..| .....+++.++..++++|
T Consensus 71 s~g~~ia~a~d~~~~~~~a~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~g~~~~~i~~~~~~~~~l~a~e 150 (160)
T cd07016 71 SAASVIAMAGDEVEMPPNAMLMIHNPSTGAAGNADDLRKAADLLDKIDESIANAYAEKTGLSEEEISALMDAETWLTAQE 150 (160)
T ss_pred hHHHHHHhcCCeEEECCCcEEEEECCccccCcCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHhCCeECcHHH
Confidence 99999999999999999999999877666544322 1233777888 677888888888999999
Q ss_pred HHHcCCccee
Q 007805 174 GWKLGLIDAV 183 (589)
Q Consensus 174 A~~~Glv~~v 183 (589)
|+++||||+|
T Consensus 151 A~~~GliD~v 160 (160)
T cd07016 151 AVELGFADEI 160 (160)
T ss_pred HHHcCCCCcC
Confidence 9999999985
No 152
>PRK08818 prephenate dehydrogenase; Provisional
Probab=99.40 E-value=3.2e-12 Score=132.60 Aligned_cols=136 Identities=13% Similarity=0.113 Sum_probs=104.2
Q ss_pred ceEEEEcC-CCCcHHHHHHHHhC-CCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cCC
Q 007805 309 RKVAVIGG-GLMGSGIATAHILN-NIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEF 385 (589)
Q Consensus 309 ~kI~IIG~-G~mG~~iA~~l~~~-G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~ 385 (589)
++|+|||+ |.||+++|..|.+. |++|+++|++.+. .++. +.+
T Consensus 5 ~~I~IIGl~GliGgslA~alk~~~~~~V~g~D~~d~~-----------------------------------~~~~~~~v 49 (370)
T PRK08818 5 PVVGIVGSAGAYGRWLARFLRTRMQLEVIGHDPADPG-----------------------------------SLDPATLL 49 (370)
T ss_pred CEEEEECCCCHHHHHHHHHHHhcCCCEEEEEcCCccc-----------------------------------cCCHHHHh
Confidence 58999999 99999999999964 8999999985210 1122 457
Q ss_pred CCCCEEEEeccCChHHHHHHHHHHHHh---CCCCcEEEecCCCC--CHHHHhcccCCCCcEEEecCCCCCCC-----CCe
Q 007805 386 KDVDMVIEAVIESVPLKQKIFSELEKA---CPPHCILATNTSTI--DLNIVGEKTSSQDRIIGAHFFSPAHV-----MPL 455 (589)
Q Consensus 386 ~~aDlVIeavpe~~~~k~~v~~~l~~~---~~~~~ii~s~ts~~--~~~~~~~~~~~~~r~ig~h~~~p~~~-----~~l 455 (589)
++||+||.|+| +....++++++.++ ++++++|++.+|+- +++.+ .....+|+|.||+..+.. ...
T Consensus 50 ~~aDlVilavP--v~~~~~~l~~l~~~~~~l~~~~iVtDVgSvK~~i~~~~---~~~~~~fVG~HPMaG~E~s~lf~g~~ 124 (370)
T PRK08818 50 QRADVLIFSAP--IRHTAALIEEYVALAGGRAAGQLWLDVTSIKQAPVAAM---LASQAEVVGLHPMTAPPKSPTLKGRV 124 (370)
T ss_pred cCCCEEEEeCC--HHHHHHHHHHHhhhhcCCCCCeEEEECCCCcHHHHHHH---HhcCCCEEeeCCCCCCCCCcccCCCe
Confidence 89999999999 77788999999886 79999998877754 23333 233347999999887753 333
Q ss_pred eeEecCCCCCHHHHHHHHHHHHHcCCeeEEE
Q 007805 456 LEIVRTERTSAQVILDLMTVGKIIKKVPVVV 486 (589)
Q Consensus 456 veiv~~~~t~~e~~~~~~~l~~~lG~~~v~v 486 (589)
+.+++. ..++.++.+.++++.+|.+++.+
T Consensus 125 ~iltp~--~~~~~~~~v~~l~~~~Ga~v~~~ 153 (370)
T PRK08818 125 MVVCEA--RLQHWSPWVQSLCSALQAECVYA 153 (370)
T ss_pred EEEeCC--CchhHHHHHHHHHHHcCCEEEEc
Confidence 445555 34556789999999999999988
No 153
>PRK12557 H(2)-dependent methylenetetrahydromethanopterin dehydrogenase-related protein; Provisional
Probab=99.39 E-value=1.3e-11 Score=127.44 Aligned_cols=178 Identities=16% Similarity=0.087 Sum_probs=117.9
Q ss_pred CcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cCCCCCCEEEEeccC
Q 007805 319 MGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKDVDMVIEAVIE 397 (589)
Q Consensus 319 mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~aDlVIeavpe 397 (589)
=|.+||..|+++||+|++||++++.++... .+...+.| ++.+++. +++++||+||+|+|.
T Consensus 31 gG~~MA~~La~aG~~V~v~Dr~~~~l~~~~------~~~l~~~G-------------i~~asd~~eaa~~ADvVIlaVP~ 91 (342)
T PRK12557 31 GGSRMAIEFAEAGHDVVLAEPNRSILSEEL------WKKVEDAG-------------VKVVSDDAEAAKHGEIHILFTPF 91 (342)
T ss_pred CHHHHHHHHHhCCCeEEEEECCHHHhhHHH------HHHHHHCC-------------CEEeCCHHHHHhCCCEEEEECCC
Confidence 388999999999999999999988654311 01111222 3444455 668999999999996
Q ss_pred ChHHHHHHHHHHHHhCCCCcEEEecCCCCCHHH----HhcccCCCCcEEEecCCCCCCC----CCeeeEecCC------C
Q 007805 398 SVPLKQKIFSELEKACPPHCILATNTSTIDLNI----VGEKTSSQDRIIGAHFFSPAHV----MPLLEIVRTE------R 463 (589)
Q Consensus 398 ~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~~----~~~~~~~~~r~ig~h~~~p~~~----~~lveiv~~~------~ 463 (589)
.. ..++++.++.+.++++++|++.+ +.+... +...+..+.+.+|.|+++|... ...++++.+. .
T Consensus 92 ~~-~v~~Vl~~L~~~L~~g~IVId~S-T~~~~~~s~~l~~~l~~~~~~~gi~~~~p~~v~Gae~g~l~Vm~gg~t~~~~~ 169 (342)
T PRK12557 92 GK-KTVEIAKNILPHLPENAVICNTC-TVSPVVLYYSLEGELRTKRKDVGISSMHPAAVPGTPQHGHYVIAGKTTNGTEL 169 (342)
T ss_pred cH-HHHHHHHHHHhhCCCCCEEEEec-CCCHHHHHHHHHHHhcccccccCeeecCCccccccccchheEEeCCCcccccC
Confidence 54 46677889999999999887544 444433 3344444445667777665532 1223455443 3
Q ss_pred CCHHHHHHHHHHHHHcCCeeEEEcCCCCcc---cccccHHH----HHHHHHHHHc-CCCHHH
Q 007805 464 TSAQVILDLMTVGKIIKKVPVVVGNCTGFA---VNRAFFPY----SQSARLLVSL-GVDVFR 517 (589)
Q Consensus 464 t~~e~~~~~~~l~~~lG~~~v~v~d~~Gfi---~nRi~~~~----~~Ea~~l~~~-Gv~~~~ 517 (589)
.+++.+++++++++.+|+++++++...|.. .|.++.+. ..|++.+.+. |.+|.+
T Consensus 170 ~~~e~~e~v~~LL~a~G~~v~~~~~g~~~~vk~~~n~l~av~~a~~aE~~~l~~~~~~~p~~ 231 (342)
T PRK12557 170 ATEEQIEKCVELAESIGKEPYVVPADVVSAVADMGSLVTAVALSGVLDYYSVGTKIIKAPKE 231 (342)
T ss_pred CCHHHHHHHHHHHHHcCCEEEEeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHH
Confidence 389999999999999999998887533333 24444333 3478877766 566654
No 154
>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=99.38 E-value=6.3e-13 Score=150.58 Aligned_cols=88 Identities=19% Similarity=0.252 Sum_probs=84.0
Q ss_pred CCCCcccccccHHHHHHHHHHHHcCC--CHHHHHHHH-HhcCCCC---cHHHHHHHhchHHHHHHHHHHHHhCCCCCCch
Q 007805 488 NCTGFAVNRAFFPYSQSARLLVSLGV--DVFRIDSAI-RSFGLPI---GPFQLLDLAGYGVAAATSKEFDKAFPDRSFQS 561 (589)
Q Consensus 488 d~~Gfi~nRi~~~~~~Ea~~l~~~Gv--~~~~iD~~~-~~~g~p~---Gpf~~~D~~Gld~~~~~~~~l~~~~~~~~~~~ 561 (589)
..||||+||++.+++|||++++++|+ +++|||.++ .++|||+ |||+++|.+|+|.++++++.+++.+++++.|+
T Consensus 613 ~~~g~i~~Rll~~~~nEa~~ll~eGvva~~~dID~~~~~G~G~p~~~gGp~~~~D~~Gld~~~~~~~~l~~~~~~~~~p~ 692 (708)
T PRK11154 613 LSANEIAERCVMLMLNEAVRCLDEGIIRSARDGDIGAVFGIGFPPFLGGPFRYMDSLGAGEVVAILERLAAQYGDRFTPC 692 (708)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHCCCcCCHHHHHHHHHhcCCCCCccCCHHHHHHHhCHHHHHHHHHHHHHhcCCccCCC
Confidence 57899999999999999999999997 999999999 9999997 99999999999999999999999999988899
Q ss_pred HHHHHHHHcCCCCcccce
Q 007805 562 PLVDLLLKSGRNGNKGFS 579 (589)
Q Consensus 562 ~~l~~~v~~g~~G~~Gfy 579 (589)
++|.+|+++| ++||
T Consensus 693 ~~l~~~~~~~----~~f~ 706 (708)
T PRK11154 693 ERLVEMAERG----ESFY 706 (708)
T ss_pred HHHHHHHHcC----CCCC
Confidence 9999999999 8886
No 155
>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated
Probab=99.38 E-value=1.2e-11 Score=128.40 Aligned_cols=199 Identities=16% Similarity=0.124 Sum_probs=125.9
Q ss_pred cceEEEEcCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cCCC
Q 007805 308 VRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFK 386 (589)
Q Consensus 308 ~~kI~IIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~ 386 (589)
|+||+|||+|.||+.+|..|+++|++|++||++++.++...+..... ... .+ . .....+..+++. +.++
T Consensus 1 mmkI~iiG~G~mG~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~--~~~-~~-~------~~~~~~~~~~~~~~~~~ 70 (325)
T PRK00094 1 MMKIAVLGAGSWGTALAIVLARNGHDVTLWARDPEQAAEINADRENP--RYL-PG-I------KLPDNLRATTDLAEALA 70 (325)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHcCccc--ccC-CC-C------cCCCCeEEeCCHHHHHh
Confidence 35899999999999999999999999999999998876643210000 000 00 0 000123445555 4678
Q ss_pred CCCEEEEeccCChHHHHHHHHHHHHhCCCCcEEEecCCCCCHH-------HHhcccCC--CCcEEEecCCCC----CCCC
Q 007805 387 DVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLN-------IVGEKTSS--QDRIIGAHFFSP----AHVM 453 (589)
Q Consensus 387 ~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~-------~~~~~~~~--~~r~ig~h~~~p----~~~~ 453 (589)
+||+||+|+|. .....++.++.+.+++++++++.++++... .+...... +..++. -|..+ ....
T Consensus 71 ~~D~vi~~v~~--~~~~~v~~~l~~~~~~~~~vi~~~ngv~~~~~~~~~~~l~~~~~~~~~~~~~~-~P~~~~~~~~g~~ 147 (325)
T PRK00094 71 DADLILVAVPS--QALREVLKQLKPLLPPDAPIVWATKGIEPGTGKLLSEVLEEELPDLAPIAVLS-GPSFAKEVARGLP 147 (325)
T ss_pred CCCEEEEeCCH--HHHHHHHHHHHhhcCCCCEEEEEeecccCCCCCcHHHHHHHHcCCCCceEEEE-CccHHHHHHcCCC
Confidence 99999999995 457788899999999999888776555542 22222221 111111 11111 0111
Q ss_pred CeeeEecCCCCCHHHHHHHHHHHHHcCCeeEEEcCCCC----------------------cccccc---cHHHHHHHHHH
Q 007805 454 PLLEIVRTERTSAQVILDLMTVGKIIKKVPVVVGNCTG----------------------FAVNRA---FFPYSQSARLL 508 (589)
Q Consensus 454 ~lveiv~~~~t~~e~~~~~~~l~~~lG~~~v~v~d~~G----------------------fi~nRi---~~~~~~Ea~~l 508 (589)
.++.+.. .+++.++.+.++++..|..+++..|..| +..|.+ ....++|++.+
T Consensus 148 ~~~~~~~---~~~~~~~~~~~~l~~~~~~~~~~~d~~g~~~~k~~~N~~~~~~g~~~~~k~~~n~~~~~~~~~~~E~~~l 224 (325)
T PRK00094 148 TAVVIAS---TDEELAERVQELFHSPYFRVYTNTDVIGVELGGALKNVIAIAAGIADGLGLGDNARAALITRGLAEITRL 224 (325)
T ss_pred cEEEEEe---CCHHHHHHHHHHhCCCCEEEEecCCcchhhHHHHHHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHHHHH
Confidence 2222222 3788999999999999988877666544 222333 23455699988
Q ss_pred HHc-CCCHHHHHHHH
Q 007805 509 VSL-GVDVFRIDSAI 522 (589)
Q Consensus 509 ~~~-Gv~~~~iD~~~ 522 (589)
.+. |++++.+..+.
T Consensus 225 a~~~G~d~~~~~~~~ 239 (325)
T PRK00094 225 GVALGANPETFLGLA 239 (325)
T ss_pred HHHhCCChhhhhccc
Confidence 866 99888776543
No 156
>PLN02858 fructose-bisphosphate aldolase
Probab=99.38 E-value=4.2e-12 Score=151.84 Aligned_cols=191 Identities=15% Similarity=0.081 Sum_probs=133.7
Q ss_pred cceEEEEcCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cCCC
Q 007805 308 VRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFK 386 (589)
Q Consensus 308 ~~kI~IIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~ 386 (589)
-++|||||+|.||.+||.+|+++||+|++||+++++.+... +.| ....+++ +.++
T Consensus 4 ~~~IGfIGLG~MG~~mA~~L~~~G~~v~v~dr~~~~~~~l~-----------~~G-------------a~~~~s~~e~a~ 59 (1378)
T PLN02858 4 AGVVGFVGLDSLSFELASSLLRSGFKVQAFEISTPLMEKFC-----------ELG-------------GHRCDSPAEAAK 59 (1378)
T ss_pred CCeEEEEchhHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHH-----------HcC-------------CeecCCHHHHHh
Confidence 36799999999999999999999999999999999877642 223 2233445 6778
Q ss_pred CCCEEEEeccCChHHHHHHH--HHHHHhCCCCcEEEecCCCCCHH---HHhcccC-CC--CcEEEecCCCCC---CCCCe
Q 007805 387 DVDMVIEAVIESVPLKQKIF--SELEKACPPHCILATNTSTIDLN---IVGEKTS-SQ--DRIIGAHFFSPA---HVMPL 455 (589)
Q Consensus 387 ~aDlVIeavpe~~~~k~~v~--~~l~~~~~~~~ii~s~ts~~~~~---~~~~~~~-~~--~r~ig~h~~~p~---~~~~l 455 (589)
+||+||.|+|++..++..++ ..+.+.++++.+++..| ++.++ ++++.+. +. .+|+-..-...+ ..+.+
T Consensus 60 ~advVi~~l~~~~~v~~V~~g~~g~~~~l~~g~iivd~S-Ti~p~~~~~la~~l~~~g~~~~~lDaPVsGg~~~A~~G~L 138 (1378)
T PLN02858 60 DAAALVVVLSHPDQVDDVFFGDEGAAKGLQKGAVILIRS-TILPLQLQKLEKKLTERKEQIFLVDAYVSKGMSDLLNGKL 138 (1378)
T ss_pred cCCEEEEEcCChHHHHHHHhchhhHHhcCCCcCEEEECC-CCCHHHHHHHHHHHHhcCCceEEEEccCcCCHHHHhcCCe
Confidence 99999999998877776665 35777788888877544 44433 3333332 22 223333332222 34566
Q ss_pred eeEecCCCCCHHHHHHHHHHHHHcCCeeEEE-cCC-CCc---ccccccH----HHHHHHHHHHHc-CCCHHHHHHHH-Hh
Q 007805 456 LEIVRTERTSAQVILDLMTVGKIIKKVPVVV-GNC-TGF---AVNRAFF----PYSQSARLLVSL-GVDVFRIDSAI-RS 524 (589)
Q Consensus 456 veiv~~~~t~~e~~~~~~~l~~~lG~~~v~v-~d~-~Gf---i~nRi~~----~~~~Ea~~l~~~-Gv~~~~iD~~~-~~ 524 (589)
+.++.| +++++++++++++.+|+.++++ ++. .|. ++|.++. ..+.||+.+.+. |++++.+-.++ .+
T Consensus 139 ~imvGG---~~~~~~~~~p~l~~~g~~i~~~~G~~G~g~~~KL~nN~l~~~~~~a~aEAl~la~~~Gld~~~l~~vl~~s 215 (1378)
T PLN02858 139 MIIASG---RSDAITRAQPFLSAMCQKLYTFEGEIGAGSKVKMVNELLEGIHLVASAEAMALGVRAGIHPWIIYDIISNA 215 (1378)
T ss_pred EEEEcC---CHHHHHHHHHHHHHhcCceEEecCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhcC
Confidence 667777 8899999999999999998875 542 232 2344433 234599988876 99999988888 55
Q ss_pred cC
Q 007805 525 FG 526 (589)
Q Consensus 525 ~g 526 (589)
.|
T Consensus 216 ~g 217 (1378)
T PLN02858 216 AG 217 (1378)
T ss_pred Cc
Confidence 55
No 157
>PRK07634 pyrroline-5-carboxylate reductase; Reviewed
Probab=99.38 E-value=1.4e-11 Score=122.52 Aligned_cols=188 Identities=15% Similarity=0.140 Sum_probs=131.8
Q ss_pred cceEEEEcCCCCcHHHHHHHHhCCC---e-EEEEeC-ChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc
Q 007805 308 VRKVAVIGGGLMGSGIATAHILNNI---Y-VVLKEV-NSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY 382 (589)
Q Consensus 308 ~~kI~IIG~G~mG~~iA~~l~~~G~---~-V~~~d~-~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~ 382 (589)
..||+|||+|.||.+++..++++|+ + |+++++ ++++++...+. . .+..+++.
T Consensus 4 ~~kI~iIG~G~mg~ala~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~----------------------~-~~~~~~~~ 60 (245)
T PRK07634 4 KHRILFIGAGRMAEAIFSGLLKTSKEYIEEIIVSNRSNVEKLDQLQAR----------------------Y-NVSTTTDW 60 (245)
T ss_pred CCeEEEECcCHHHHHHHHHHHhCCCCCcCeEEEECCCCHHHHHHHHHH----------------------c-CcEEeCCh
Confidence 4689999999999999999998873 3 777887 46665543211 0 12233444
Q ss_pred -cCCCCCCEEEEeccCChHHHHHHHHHHHHhCCCCcEEEecCCCCCHHHHhcccCCCCcEEEecCCCCCCCCCeeeEe-c
Q 007805 383 -SEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIV-R 460 (589)
Q Consensus 383 -~~~~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~~~~~~~~~~~r~ig~h~~~p~~~~~lveiv-~ 460 (589)
+.++++|+||.|+| ....+++++++.++++ +.+|+|.+.+++++.+...++...+++..||..+......+..+ .
T Consensus 61 ~~~~~~~DiViiavp--~~~~~~v~~~l~~~~~-~~~vis~~~gi~~~~l~~~~~~~~~v~r~~Pn~a~~v~~g~~~~~~ 137 (245)
T PRK07634 61 KQHVTSVDTIVLAMP--PSAHEELLAELSPLLS-NQLVVTVAAGIGPSYLEERLPKGTPVAWIMPNTAAEIGKSISLYTM 137 (245)
T ss_pred HHHHhcCCEEEEecC--HHHHHHHHHHHHhhcc-CCEEEEECCCCCHHHHHHHcCCCCeEEEECCcHHHHHhcCCeEEee
Confidence 55789999999999 5556888888888776 56888999999999998888765678889998776555444333 4
Q ss_pred CCCCCHHHHHHHHHHHHHcCCeeEEEcCCCCccc------ccccHHHHHHHH--HHHHcCCCHHHHHHHH
Q 007805 461 TERTSAQVILDLMTVGKIIKKVPVVVGNCTGFAV------NRAFFPYSQSAR--LLVSLGVDVFRIDSAI 522 (589)
Q Consensus 461 ~~~t~~e~~~~~~~l~~~lG~~~v~v~d~~Gfi~------nRi~~~~~~Ea~--~l~~~Gv~~~~iD~~~ 522 (589)
....+++..+.++.+++.+|..+.+- +..-... +--+...+.+++ ..++.|++.++..+++
T Consensus 138 ~~~~~~~~~~~v~~lf~~~G~~~~~~-e~~~~~~~a~~gs~pa~~~~~~~a~~~~~~~~Gl~~~~a~~~~ 206 (245)
T PRK07634 138 GQSVNETHKETLQLILKGIGTSQLCT-EEEVHQLTAVTGSAPAFLYYFAESLIEATKSYGVDEETAKHLV 206 (245)
T ss_pred CCCCCHHHHHHHHHHHHhCCCEEEEC-HHHcchHHhhhcchHHHHHHHHHHHHHHHHHcCCCHHHHHHHH
Confidence 56678999999999999999999753 2211111 111222333443 3445688888877665
No 158
>PRK07680 late competence protein ComER; Validated
Probab=99.37 E-value=1.3e-11 Score=124.58 Aligned_cols=151 Identities=13% Similarity=0.068 Sum_probs=111.9
Q ss_pred eEEEEcCCCCcHHHHHHHHhCCC----eEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cC
Q 007805 310 KVAVIGGGLMGSGIATAHILNNI----YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SE 384 (589)
Q Consensus 310 kI~IIG~G~mG~~iA~~l~~~G~----~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~ 384 (589)
+|+|||+|.||++|+..|.++|+ +|++||+++++.+...++ ...+..+.+. +.
T Consensus 2 ~I~iIG~G~mG~ala~~L~~~g~~~~~~v~v~~r~~~~~~~~~~~----------------------~~g~~~~~~~~~~ 59 (273)
T PRK07680 2 NIGFIGTGNMGTILIEAFLESGAVKPSQLTITNRTPAKAYHIKER----------------------YPGIHVAKTIEEV 59 (273)
T ss_pred EEEEECccHHHHHHHHHHHHCCCCCcceEEEECCCHHHHHHHHHH----------------------cCCeEEECCHHHH
Confidence 69999999999999999999984 799999998876553210 0012334444 55
Q ss_pred CCCCCEEEEeccCChHHHHHHHHHHHHhCCCCcEEEecCCCCCHHHHhcccCCCCcEEEecCCCCCCCCCee-eEecCCC
Q 007805 385 FKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLL-EIVRTER 463 (589)
Q Consensus 385 ~~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~~~~~~~~~~~r~ig~h~~~p~~~~~lv-eiv~~~~ 463 (589)
++++|+||+|+| +....++++++.++++++++|++.+++++++.+...++ .+.+..+|..|......+ -++.+..
T Consensus 60 ~~~aDiVilav~--p~~~~~vl~~l~~~l~~~~~iis~~ag~~~~~L~~~~~--~~~~r~~p~~~~~~~~G~t~~~~g~~ 135 (273)
T PRK07680 60 ISQSDLIFICVK--PLDIYPLLQKLAPHLTDEHCLVSITSPISVEQLETLVP--CQVARIIPSITNRALSGASLFTFGSR 135 (273)
T ss_pred HHhCCEEEEecC--HHHHHHHHHHHHhhcCCCCEEEEECCCCCHHHHHHHcC--CCEEEECCChHHHHhhccEEEeeCCC
Confidence 789999999997 55577888999988888889999999899888887665 356667775443221222 2345666
Q ss_pred CCHHHHHHHHHHHHHcCCeeEEEc
Q 007805 464 TSAQVILDLMTVGKIIKKVPVVVG 487 (589)
Q Consensus 464 t~~e~~~~~~~l~~~lG~~~v~v~ 487 (589)
.+++..+.+.+++..+|. ++.+.
T Consensus 136 ~~~~~~~~~~~ll~~~G~-~~~i~ 158 (273)
T PRK07680 136 CSEEDQQKLERLFSNIST-PLVIE 158 (273)
T ss_pred CCHHHHHHHHHHHHcCCC-EEEEC
Confidence 788889999999999995 44443
No 159
>TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog.
Probab=99.37 E-value=7.8e-13 Score=149.47 Aligned_cols=88 Identities=17% Similarity=0.206 Sum_probs=83.4
Q ss_pred CCCCcccccccHHHHHHHHHHHHcCC--CHHHHHHHH-HhcCCCC---cHHHHHHHhchHHHHHHHHHHHHhCCCCCCch
Q 007805 488 NCTGFAVNRAFFPYSQSARLLVSLGV--DVFRIDSAI-RSFGLPI---GPFQLLDLAGYGVAAATSKEFDKAFPDRSFQS 561 (589)
Q Consensus 488 d~~Gfi~nRi~~~~~~Ea~~l~~~Gv--~~~~iD~~~-~~~g~p~---Gpf~~~D~~Gld~~~~~~~~l~~~~~~~~~~~ 561 (589)
..+||++||++.+++|||++++++|+ +++|||.++ .++|||+ |||+++|.+|+|.++++++.+++.+++++.|+
T Consensus 606 ~~~g~v~~Rll~~~~~Ea~~ll~eGvva~~~dID~~~~~g~G~p~~~~Gpf~~~D~~Gld~~~~~~~~l~~~~g~~~~p~ 685 (699)
T TIGR02440 606 KEASAVAERCVMLMLNEAVRCLDEGVIRSPRDGDIGAIFGIGFPPFLGGPFRYIDTLGADNVVKILERLQTQYGDRFTPC 685 (699)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHCCCcCCHHHHHHHHHhcCCCCCCcCCHHHHHHHhCHHHHHHHHHHHHHHcCCCcCCC
Confidence 47899999999999999999999997 999999999 9999995 99999999999999999999999999887899
Q ss_pred HHHHHHHHcCCCCcccce
Q 007805 562 PLVDLLLKSGRNGNKGFS 579 (589)
Q Consensus 562 ~~l~~~v~~g~~G~~Gfy 579 (589)
++|.+|+++| +.||
T Consensus 686 ~~L~~~~~~~----~~f~ 699 (699)
T TIGR02440 686 QRLVAMAAEK----QSFY 699 (699)
T ss_pred HHHHHHHHcC----CCcC
Confidence 9999999999 7786
No 160
>PRK05479 ketol-acid reductoisomerase; Provisional
Probab=99.37 E-value=1.2e-11 Score=125.77 Aligned_cols=183 Identities=14% Similarity=0.083 Sum_probs=129.6
Q ss_pred ceEEEEcCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cCCCC
Q 007805 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD 387 (589)
Q Consensus 309 ~kI~IIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~ 387 (589)
++|+|||.|.||.++|..|...|++|++++++.++..... .+.| +... +. ++++.
T Consensus 18 ktIgIIG~GsmG~AlA~~L~~sG~~Vvv~~r~~~~s~~~A----------~~~G-------------~~~~-s~~eaa~~ 73 (330)
T PRK05479 18 KKVAIIGYGSQGHAHALNLRDSGVDVVVGLREGSKSWKKA----------EADG-------------FEVL-TVAEAAKW 73 (330)
T ss_pred CEEEEEeeHHHHHHHHHHHHHCCCEEEEEECCchhhHHHH----------HHCC-------------CeeC-CHHHHHhc
Confidence 6899999999999999999999999999988755432210 1111 1222 33 67899
Q ss_pred CCEEEEeccCChHHHHHHH-HHHHHhCCCCcEEEecCCCCCHHHHhcccCCCCcEEEecCCCCCC-------CCCeeeE-
Q 007805 388 VDMVIEAVIESVPLKQKIF-SELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAH-------VMPLLEI- 458 (589)
Q Consensus 388 aDlVIeavpe~~~~k~~v~-~~l~~~~~~~~ii~s~ts~~~~~~~~~~~~~~~r~ig~h~~~p~~-------~~~lvei- 458 (589)
||+|+.++|... ...++ +++.+.++++++| +.++++.+.......+...+++..+|..|.+ .+..+-.
T Consensus 74 ADVVvLaVPd~~--~~~V~~~~I~~~Lk~g~iL-~~a~G~~i~~~~~~p~~~~~Vi~vaPn~Pg~~vr~~~~~G~Gv~~l 150 (330)
T PRK05479 74 ADVIMILLPDEV--QAEVYEEEIEPNLKEGAAL-AFAHGFNIHFGQIVPPADVDVIMVAPKGPGHLVRREYEEGGGVPCL 150 (330)
T ss_pred CCEEEEcCCHHH--HHHHHHHHHHhcCCCCCEE-EECCCCChhhceeccCCCCcEEEeCCCCCchhhhhhhhcCCCceEE
Confidence 999999999444 36777 7799999999988 8888999888766655566789999999987 4444432
Q ss_pred e-cCCCCCHHHHHHHHHHHHHcCCeeE-----EEcC-C-CCccccc-c----cHHHHHHHHHHH-HcCCCHHHH
Q 007805 459 V-RTERTSAQVILDLMTVGKIIKKVPV-----VVGN-C-TGFAVNR-A----FFPYSQSARLLV-SLGVDVFRI 518 (589)
Q Consensus 459 v-~~~~t~~e~~~~~~~l~~~lG~~~v-----~v~d-~-~Gfi~nR-i----~~~~~~Ea~~l~-~~Gv~~~~i 518 (589)
+ .+...+.+..+.+..+++.+|..+. ..++ . .-...-+ + +..++..++..+ +.|++|+..
T Consensus 151 ~av~~d~t~~a~~~a~~l~~aiG~~~~g~~~ttf~~e~~~dl~geq~vl~gg~~~l~~~~~e~l~eaG~~pe~A 224 (330)
T PRK05479 151 IAVHQDASGNAKDLALAYAKGIGGTRAGVIETTFKEETETDLFGEQAVLCGGLTELIKAGFETLVEAGYQPEMA 224 (330)
T ss_pred EEecCCCCHHHHHHHHHHHHHcCCCccceeeeeecccccccchhhHHHHhhHHHHHHHHHHHHHHHcCCCHHHH
Confidence 2 3555678999999999999998875 3322 1 1112112 1 234555677555 559988764
No 161
>PRK15057 UDP-glucose 6-dehydrogenase; Provisional
Probab=99.37 E-value=1.7e-12 Score=136.56 Aligned_cols=197 Identities=16% Similarity=0.168 Sum_probs=117.1
Q ss_pred eEEEEcCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cCCCCC
Q 007805 310 KVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKDV 388 (589)
Q Consensus 310 kI~IIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~a 388 (589)
||+|||+|.||.++|..++. ||+|++||+++++++...+......+..+++ .......+++.+++. +++++|
T Consensus 2 kI~VIGlGyvGl~~A~~lA~-G~~VigvD~d~~kv~~l~~g~~~~~e~~l~~------~l~~~~~~l~~t~~~~~~~~~a 74 (388)
T PRK15057 2 KITISGTGYVGLSNGLLIAQ-NHEVVALDILPSRVAMLNDRISPIVDKEIQQ------FLQSDKIHFNATLDKNEAYRDA 74 (388)
T ss_pred EEEEECCCHHHHHHHHHHHh-CCcEEEEECCHHHHHHHHcCCCCCCCcCHHH------HHHhCCCcEEEecchhhhhcCC
Confidence 79999999999999988875 9999999999999888654221111100100 000011345555555 667999
Q ss_pred CEEEEeccCChH---------HHHHHHHHHHHhCCCCcEEEecCCCCCHH---HHhcccCCCCcEEEecCCCCCCCCCee
Q 007805 389 DMVIEAVIESVP---------LKQKIFSELEKACPPHCILATNTSTIDLN---IVGEKTSSQDRIIGAHFFSPAHVMPLL 456 (589)
Q Consensus 389 DlVIeavpe~~~---------~k~~v~~~l~~~~~~~~ii~s~ts~~~~~---~~~~~~~~~~r~ig~h~~~p~~~~~lv 456 (589)
|+||+|||++.+ ...+++++|.. ++++.+++. .|++++. ++...+. +. +..| +|....+.-
T Consensus 75 d~vii~Vpt~~~~k~~~~dl~~v~~v~~~i~~-~~~g~lVV~-~STv~pgtt~~l~~~~~--~~--~v~~-~PE~l~~G~ 147 (388)
T PRK15057 75 DYVIIATPTDYDPKTNYFNTSSVESVIKDVVE-INPYAVMVI-KSTVPVGFTAAMHKKYR--TE--NIIF-SPEFLREGK 147 (388)
T ss_pred CEEEEeCCCCCccCCCCcChHHHHHHHHHHHh-cCCCCEEEE-eeecCCchHHHHHHHhh--cC--cEEE-CcccccCCc
Confidence 999999998743 33456677776 577777653 3333332 3332221 11 1111 232211111
Q ss_pred ---------eEecCCCCCHHHHHHHHHHHHH--cCCeeE-EEcCC-----CCccccccc---HHHHHHHHHHHHc-CCCH
Q 007805 457 ---------EIVRTERTSAQVILDLMTVGKI--IKKVPV-VVGNC-----TGFAVNRAF---FPYSQSARLLVSL-GVDV 515 (589)
Q Consensus 457 ---------eiv~~~~t~~e~~~~~~~l~~~--lG~~~v-~v~d~-----~Gfi~nRi~---~~~~~Ea~~l~~~-Gv~~ 515 (589)
-++.|. +++..+.+.+++.. ++..+. ++.+. ..++.|-++ .+++||+..+.+. |+++
T Consensus 148 a~~d~~~p~rvv~G~--~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~AE~~Kl~~N~~~a~~Ia~~NE~a~lae~~GiD~ 225 (388)
T PRK15057 148 ALYDNLHPSRIVIGE--RSERAERFAALLQEGAIKQNIPTLFTDSTEAEAIKLFANTYLAMRVAYFNELDSYAESLGLNT 225 (388)
T ss_pred ccccccCCCEEEEEc--CcHHHHHHHHHHHhhhhcCCCceeeCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCH
Confidence 133332 34556777787754 554333 34332 234445553 5678999988877 9999
Q ss_pred HHHHHHH
Q 007805 516 FRIDSAI 522 (589)
Q Consensus 516 ~~iD~~~ 522 (589)
.++=.++
T Consensus 226 ~eV~~a~ 232 (388)
T PRK15057 226 RQIIEGV 232 (388)
T ss_pred HHHHHHh
Confidence 9887777
No 162
>PLN02712 arogenate dehydrogenase
Probab=99.37 E-value=1.6e-11 Score=137.34 Aligned_cols=153 Identities=11% Similarity=0.041 Sum_probs=110.7
Q ss_pred ccceEEEEcCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cCC
Q 007805 307 GVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEF 385 (589)
Q Consensus 307 ~~~kI~IIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~ 385 (589)
..++|+|||+|.||+++|..|.+.|++|++||++... +.+ .+.| +...++. +.+
T Consensus 368 ~~~kIgIIGlG~mG~slA~~L~~~G~~V~~~dr~~~~-~~a-----------~~~G-------------v~~~~~~~el~ 422 (667)
T PLN02712 368 SKLKIAIVGFGNFGQFLAKTMVKQGHTVLAYSRSDYS-DEA-----------QKLG-------------VSYFSDADDLC 422 (667)
T ss_pred CCCEEEEEecCHHHHHHHHHHHHCcCEEEEEECChHH-HHH-----------HHcC-------------CeEeCCHHHHH
Confidence 4578999999999999999999999999999998542 221 1112 1223444 334
Q ss_pred C-CCCEEEEeccCChHHHHHHHHHHHH-hCCCCcEEEecCCC--CCHHHHhcccCCCCcEEEecCCCCCCCCC-----ee
Q 007805 386 K-DVDMVIEAVIESVPLKQKIFSELEK-ACPPHCILATNTST--IDLNIVGEKTSSQDRIIGAHFFSPAHVMP-----LL 456 (589)
Q Consensus 386 ~-~aDlVIeavpe~~~~k~~v~~~l~~-~~~~~~ii~s~ts~--~~~~~~~~~~~~~~r~ig~h~~~p~~~~~-----lv 456 (589)
. ++|+||.|+| +.....++.++.. .++++++|++.+|+ .+...+....+...+|++.||+.++.... ..
T Consensus 423 ~~~aDvVILavP--~~~~~~vi~~l~~~~lk~g~ivvDv~SvK~~~~~~~~~~l~~~~~~v~~HPm~G~e~~~~G~~~~~ 500 (667)
T PLN02712 423 EEHPEVILLCTS--ILSTEKVLKSLPFQRLKRSTLFVDVLSVKEFPRNLFLQHLPQDFDILCTHPMFGPESGKNGWNNLA 500 (667)
T ss_pred hcCCCEEEECCC--hHHHHHHHHHHHHhcCCCCcEEEECCCccHHHHHHHHHhccCCCceEeeCCCCCccccccchhhhh
Confidence 3 5899999999 5567788888765 57889999988776 55566666665555799999988876531 11
Q ss_pred -----eEecCCCCCHHHHHHHHHHHHHcCCeeEEE
Q 007805 457 -----EIVRTERTSAQVILDLMTVGKIIKKVPVVV 486 (589)
Q Consensus 457 -----eiv~~~~t~~e~~~~~~~l~~~lG~~~v~v 486 (589)
-++.++....+.++.+.++++.+|.+++.+
T Consensus 501 ~lf~~~~v~~~~~~~~~~~~l~~l~~~lGa~vv~m 535 (667)
T PLN02712 501 FVFDKVRIGSDDRRVSRCDSFLDIFAREGCRMVEM 535 (667)
T ss_pred hhccCcEeCCCcchHHHHHHHHHHHHHcCCEEEEe
Confidence 122344445667778889999999999988
No 163
>TIGR00873 gnd 6-phosphogluconate dehydrogenase, decarboxylating. This model does not specify whether the cofactor is NADP only (EC 1.1.1.44), NAD only, or both. The model does not assign an EC number for that reason.
Probab=99.36 E-value=6.1e-12 Score=135.05 Aligned_cols=189 Identities=15% Similarity=0.116 Sum_probs=125.4
Q ss_pred eEEEEcCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc----cCC
Q 007805 310 KVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY----SEF 385 (589)
Q Consensus 310 kI~IIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~----~~~ 385 (589)
+|+|||+|.||.+||..|+++|++|++||+++++.+...+.. ..|. .+....++ +.+
T Consensus 1 ~IG~IGLG~MG~~mA~nL~~~G~~V~v~drt~~~~~~l~~~~--------~~g~-----------~~~~~~s~~e~v~~l 61 (467)
T TIGR00873 1 DIGVIGLAVMGSNLALNMADHGFTVSVYNRTPEKTDEFLAEH--------AKGK-----------KIVGAYSIEEFVQSL 61 (467)
T ss_pred CEEEEeeHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHhhc--------cCCC-----------CceecCCHHHHHhhc
Confidence 489999999999999999999999999999999887653210 0010 01122222 234
Q ss_pred CCCCEEEEeccCChHHHHHHHHHHHHhCCCCcEEEecCCCCCHHHH--hccc-CCCCcEEEecCCCCC---CCCCeeeEe
Q 007805 386 KDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIV--GEKT-SSQDRIIGAHFFSPA---HVMPLLEIV 459 (589)
Q Consensus 386 ~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~~~--~~~~-~~~~r~ig~h~~~p~---~~~~lveiv 459 (589)
+.+|+||.+||.... ..+++.++.++++++.||++.+++.+.+.. ...+ .+..+|++++....+ ..++ . ++
T Consensus 62 ~~~dvIil~v~~~~~-v~~Vi~~l~~~L~~g~iIID~gns~~~~t~~~~~~l~~~gi~fvdapVsGG~~gA~~G~-~-im 138 (467)
T TIGR00873 62 ERPRKIMLMVKAGAP-VDAVINQLLPLLEKGDIIIDGGNSHYPDTERRYKELKAKGILFVGSGVSGGEEGARKGP-S-IM 138 (467)
T ss_pred CCCCEEEEECCCcHH-HHHHHHHHHhhCCCCCEEEECCCcCHHHHHHHHHHHHhcCCEEEcCCCCCCHHHHhcCC-c-CC
Confidence 679999999996544 456778899999999999877765544422 2222 223345554443222 1222 1 22
Q ss_pred cCCCCCHHHHHHHHHHHHHcCCee------EEEcCC-CCc----ccccccHHH---HHHHHHHHH--cCCCHHHHHHHH
Q 007805 460 RTERTSAQVILDLMTVGKIIKKVP------VVVGNC-TGF----AVNRAFFPY---SQSARLLVS--LGVDVFRIDSAI 522 (589)
Q Consensus 460 ~~~~t~~e~~~~~~~l~~~lG~~~------v~v~d~-~Gf----i~nRi~~~~---~~Ea~~l~~--~Gv~~~~iD~~~ 522 (589)
.| .++++++.++++++.++.++ .++++. .|. +-|-+.+.+ +.|++.++. .|++++++-.++
T Consensus 139 ~G--G~~~a~~~~~p~L~~ia~~~~~~~~~~~~G~~GsG~~vKmvhN~i~~~~m~~~aEa~~ll~~~~g~~~~~l~~v~ 215 (467)
T TIGR00873 139 PG--GSAEAWPLVAPIFQKIAAKVDGEPCCTWIGPDGAGHYVKMVHNGIEYGDMQLICEAYDILKDGLGLSNEEIAEVF 215 (467)
T ss_pred CC--CCHHHHHHHHHHHHHHhhhcCCCCceEEECCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHH
Confidence 22 38999999999999999874 567652 232 335555444 359999874 589999887777
No 164
>TIGR00706 SppA_dom signal peptide peptidase SppA, 36K type. The member of this family from Bacillus subtilis was shown to have properties consistent with a role in degrading signal peptides after cleavage from precursor proteins, although it was not demonstrated conclusively.
Probab=99.36 E-value=1e-11 Score=119.83 Aligned_cols=154 Identities=25% Similarity=0.303 Sum_probs=107.4
Q ss_pred EEEEEeCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCCcCCCCchhhhhccCCCcccccchhHHHHHHHHH
Q 007805 15 VAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLI 94 (589)
Q Consensus 15 v~~i~l~~p~~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l 94 (589)
|++|+++.+ ++ ....+|.++|+.+.+|+++++|||+.. |.|+++... .++. +.|
T Consensus 2 v~vi~i~g~----i~-~s~~~l~~~l~~a~~d~~i~~vvl~~~----s~Gg~~~~~----------------~~l~-~~i 55 (207)
T TIGR00706 2 IAILPVSGA----IA-VSPEDFDKKIKRIKDDKSIKALLLRIN----SPGGTVVAS----------------EEIY-EKL 55 (207)
T ss_pred EEEEEEEEE----Ee-cCHHHHHHHHHHHhhCCCccEEEEEec----CCCCCHHHH----------------HHHH-HHH
Confidence 566666544 21 335789999999999999999999874 777776532 2333 556
Q ss_pred HhCC--CcEEEEeCCcccchhhHHhhhcCEEEEeCCceEeccccc------------cCCCCC------------h--hh
Q 007805 95 EDCK--KPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELT------------LGVIPG------------F--GG 146 (589)
Q Consensus 95 ~~~~--kp~iaav~G~a~GgG~~lala~D~~ia~~~a~~~~pe~~------------~Gl~p~------------~--g~ 146 (589)
..++ ||+||.++|.|.|+|+.|+++||.+++++++.++..-+. +|+-+. . ..
T Consensus 56 ~~~~~~kpvia~v~g~a~s~g~~la~aaD~i~a~p~a~vg~iGv~~~~~~~~~~l~k~Gv~~~~~~~g~~K~~~~~~~~~ 135 (207)
T TIGR00706 56 KKLKAKKPVVASMGGVAASGGYYIAMAADEIVANPGTITGSIGVILQGANVEKLYEKLGIEFEVIKSGEYKDIGSPTREL 135 (207)
T ss_pred HHhcCCCCEEEEECCccchHHHHHHhcCCEEEECCCCeEEeeeEEEecCCHHHHHHhCCceEEEEEcCCCcCCCCCCCCC
Confidence 6676 999999999999999999999999999999887653332 333210 0 00
Q ss_pred h----hhH-----------------hhhcCHHHHHHHHHcCCCCCHHHHHHcCCcceecCchHHHHHHHH
Q 007805 147 T----QRL-----------------PRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRL 195 (589)
Q Consensus 147 ~----~~l-----------------~~~~G~~~a~~l~ltg~~~~a~~A~~~Glv~~vv~~~~l~~~a~~ 195 (589)
+ ..+ .|.+...... -++.|+.+++++|++.||||++...+++.+...+
T Consensus 136 s~~~~e~~~~~l~~~~~~f~~~va~~R~~~~~~~~-~~~~~~~~~~~~A~~~gLvD~i~~~~~~~~~~~~ 204 (207)
T TIGR00706 136 TPEERDILQNLVNESYEQFVQVVAKGRNLPVEDVK-KFADGRVFTGRQALKLRLVDKLGTEDDALKWLAE 204 (207)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHH-HHhcCCcccHHHHHHcCCCcccCCHHHHHHHHHH
Confidence 0 011 1222323233 3468899999999999999999887776655443
No 165
>PRK06476 pyrroline-5-carboxylate reductase; Reviewed
Probab=99.36 E-value=1.9e-11 Score=122.51 Aligned_cols=179 Identities=11% Similarity=0.093 Sum_probs=124.2
Q ss_pred eEEEEcCCCCcHHHHHHHHhCCCe---EEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cCC
Q 007805 310 KVAVIGGGLMGSGIATAHILNNIY---VVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEF 385 (589)
Q Consensus 310 kI~IIG~G~mG~~iA~~l~~~G~~---V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~ 385 (589)
+|+|||+|+||.+|+..|.+.|++ |.+|++++++.+...+. .......++. +.+
T Consensus 2 ~IgiIG~G~mG~aia~~L~~~g~~~~~i~v~~r~~~~~~~l~~~----------------------~~~~~~~~~~~~~~ 59 (258)
T PRK06476 2 KIGFIGTGAITEAMVTGLLTSPADVSEIIVSPRNAQIAARLAER----------------------FPKVRIAKDNQAVV 59 (258)
T ss_pred eEEEECcCHHHHHHHHHHHhCCCChheEEEECCCHHHHHHHHHH----------------------cCCceEeCCHHHHH
Confidence 799999999999999999998864 57999998876653221 0112233444 557
Q ss_pred CCCCEEEEeccCChHHHHHHHHHHHHhCCCCcEEEecCCCCCHHHHhcccCCCCcEEEecCCCCCCCCCeeeEecCCCCC
Q 007805 386 KDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTS 465 (589)
Q Consensus 386 ~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~~~~~~~~~~~r~ig~h~~~p~~~~~lveiv~~~~t~ 465 (589)
+++|+||+|+| ++...+++.++. +.++.+++|...+++++.+........+.+..||..|......+..+.. +
T Consensus 60 ~~aDvVilav~--p~~~~~vl~~l~--~~~~~~vis~~ag~~~~~l~~~~~~~~~~~r~~P~~~~a~~~g~t~~~~---~ 132 (258)
T PRK06476 60 DRSDVVFLAVR--PQIAEEVLRALR--FRPGQTVISVIAATDRAALLEWIGHDVKLVRAIPLPFVAERKGVTAIYP---P 132 (258)
T ss_pred HhCCEEEEEeC--HHHHHHHHHHhc--cCCCCEEEEECCCCCHHHHHHHhCCCCCEEEECCCChhhhCCCCeEecC---C
Confidence 88999999998 555677777762 4677888888899999999888776667888999877765544444432 1
Q ss_pred HHHHHHHHHHHHHcCCeeEEEcC--CCCc------ccccccHHHHHHHHHHH-HcCCCHHHHHHHH
Q 007805 466 AQVILDLMTVGKIIKKVPVVVGN--CTGF------AVNRAFFPYSQSARLLV-SLGVDVFRIDSAI 522 (589)
Q Consensus 466 ~e~~~~~~~l~~~lG~~~v~v~d--~~Gf------i~nRi~~~~~~Ea~~l~-~~Gv~~~~iD~~~ 522 (589)
.+.++++++.+|..+++..+ ..-+ .+| ++.++.++.... +.|+++++.-+++
T Consensus 133 ---~~~~~~l~~~lG~~~~~~~e~~~d~~~a~~s~~a~--~~~~~~~~~~~~~~~Gl~~~~a~~~~ 193 (258)
T PRK06476 133 ---DPFVAALFDALGTAVECDSEEEYDLLAAASALMAT--YFGILETATGWLEEQGLKRQKARAYL 193 (258)
T ss_pred ---HHHHHHHHHhcCCcEEECChHhccceeehhccHHH--HHHHHHHHHHHHHHcCCCHHHHHHHH
Confidence 25789999999998875422 1111 112 122444555454 5599988877665
No 166
>TIGR00465 ilvC ketol-acid reductoisomerase. This is the second enzyme in the parallel isoleucine-valine biosynthetic pathway
Probab=99.35 E-value=1.1e-11 Score=126.53 Aligned_cols=202 Identities=11% Similarity=0.055 Sum_probs=138.1
Q ss_pred ceEEEEcCCCCcHHHHHHHHhCCCeEEEEeCC-hHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCccCCCC
Q 007805 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVN-SEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKD 387 (589)
Q Consensus 309 ~kI~IIG~G~mG~~iA~~l~~~G~~V~~~d~~-~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~ 387 (589)
++|+|||+|+||.++|..|..+|++|+++++. +++.+.+. +.| +...+..+++++
T Consensus 4 kkIgiIG~G~mG~AiA~~L~~sG~~Viv~~~~~~~~~~~a~-----------~~G-------------v~~~s~~ea~~~ 59 (314)
T TIGR00465 4 KTVAIIGYGSQGHAQALNLRDSGLNVIVGLRKGGASWKKAT-----------EDG-------------FKVGTVEEAIPQ 59 (314)
T ss_pred CEEEEEeEcHHHHHHHHHHHHCCCeEEEEECcChhhHHHHH-----------HCC-------------CEECCHHHHHhc
Confidence 67999999999999999999999998876554 33433321 112 222232366899
Q ss_pred CCEEEEeccCChHHHHHHHHHHHHhCCCCcEEEecCCCCCHHHHhcccCCCCcEEEecCCCCCCC-------CCee-eEe
Q 007805 388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHV-------MPLL-EIV 459 (589)
Q Consensus 388 aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~~~~~~~~~~~r~ig~h~~~p~~~-------~~lv-eiv 459 (589)
||+|+.++|++. ....+++++.+.++++. ++|...++++..+....+...+++...|..|.+. +..+ -++
T Consensus 60 ADiVvLaVpp~~-~~~~v~~ei~~~l~~g~-iVs~aaG~~i~~~~~~~~~~~~VvrvmPn~p~~~vr~~~~~G~G~~~l~ 137 (314)
T TIGR00465 60 ADLIMNLLPDEV-QHEVYEAEIQPLLKEGK-TLGFSHGFNIHFVQIVPPKDVDVVMVAPKGPGTLVREEYKEGFGVPTLI 137 (314)
T ss_pred CCEEEEeCCcHh-HHHHHHHHHHhhCCCCc-EEEEeCCccHhhccccCCCCCcEEEECCCCCcHHHHHHhhcCCCeeEEE
Confidence 999999999542 35566778988888886 5688899999988777766668999999999984 5555 343
Q ss_pred -cCCCCCHHHHHHHHHHHHHcCCe-------eE--EE-cCCCCcc--cccccHHHHH---HHHHHHHcCCCHHHHHHHH-
Q 007805 460 -RTERTSAQVILDLMTVGKIIKKV-------PV--VV-GNCTGFA--VNRAFFPYSQ---SARLLVSLGVDVFRIDSAI- 522 (589)
Q Consensus 460 -~~~~t~~e~~~~~~~l~~~lG~~-------~v--~v-~d~~Gfi--~nRi~~~~~~---Ea~~l~~~Gv~~~~iD~~~- 522 (589)
.+...+.+..+.+..+++.+|.. .. .+ .|.=+-+ +.=..-+++. |++ ++.|++++..-...
T Consensus 138 a~~~~~~~~~~~~~~~~~~~iG~~~~~~~~t~f~~e~~edl~~~~t~l~Gs~pa~v~~~~eal--v~~G~~~e~A~~~~~ 215 (314)
T TIGR00465 138 AVEQDPTGEAMAIALAYAKAIGGGRAGVLETTFKEETESDLFGEQAVLCGGLTALIKAGFDTL--VEAGYQPELAYFETV 215 (314)
T ss_pred EecCCCCHHHHHHHHHHHHHcCCCccceeechhHhhhhHHhcCcchhHHhHHHHHHHHHHHHH--HHcCCCHHHHHHHHH
Confidence 66677899999999999999988 31 11 1111111 1111222332 555 78899888766654
Q ss_pred HhcCCCCcHHHHHHHhchH
Q 007805 523 RSFGLPIGPFQLLDLAGYG 541 (589)
Q Consensus 523 ~~~g~p~Gpf~~~D~~Gld 541 (589)
..+ .|-..++-..|+.
T Consensus 216 ~~~---~g~~~l~~e~g~~ 231 (314)
T TIGR00465 216 HEL---KLIVDLIYEGGIT 231 (314)
T ss_pred HHH---HHHHHHHHHhcHH
Confidence 322 4666666666664
No 167
>PLN02858 fructose-bisphosphate aldolase
Probab=99.35 E-value=4.9e-11 Score=142.85 Aligned_cols=190 Identities=17% Similarity=0.183 Sum_probs=130.2
Q ss_pred ccceEEEEcCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cCC
Q 007805 307 GVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEF 385 (589)
Q Consensus 307 ~~~kI~IIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~ 385 (589)
.+++|+|||+|.||.+||..|+++|++|++||+++++.+... +.| ....++. +.+
T Consensus 323 ~~~~IGfIGlG~MG~~mA~~L~~~G~~V~v~dr~~~~~~~l~-----------~~G-------------a~~~~s~~e~~ 378 (1378)
T PLN02858 323 PVKRIGFIGLGAMGFGMASHLLKSNFSVCGYDVYKPTLVRFE-----------NAG-------------GLAGNSPAEVA 378 (1378)
T ss_pred CCCeEEEECchHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH-----------HcC-------------CeecCCHHHHH
Confidence 358899999999999999999999999999999998876642 222 1123344 668
Q ss_pred CCCCEEEEeccCChHHHHHHHH--HHHHhCCCCcEEEecCCCCCHH---HHhcccCCCCcEEEecCCCCC--------CC
Q 007805 386 KDVDMVIEAVIESVPLKQKIFS--ELEKACPPHCILATNTSTIDLN---IVGEKTSSQDRIIGAHFFSPA--------HV 452 (589)
Q Consensus 386 ~~aDlVIeavpe~~~~k~~v~~--~l~~~~~~~~ii~s~ts~~~~~---~~~~~~~~~~r~ig~h~~~p~--------~~ 452 (589)
++||+||.|||++.+++..++. .+.+.++++.+++..|+ +++. ++...+... -.|.+|.+.| ..
T Consensus 379 ~~aDvVi~~V~~~~~v~~Vl~g~~g~~~~l~~g~ivVd~ST-vsP~~~~~la~~l~~~--g~g~~~lDAPVsGg~~~A~~ 455 (1378)
T PLN02858 379 KDVDVLVIMVANEVQAENVLFGDLGAVSALPAGASIVLSST-VSPGFVIQLERRLENE--GRDIKLVDAPVSGGVKRAAM 455 (1378)
T ss_pred hcCCEEEEecCChHHHHHHHhchhhHHhcCCCCCEEEECCC-CCHHHHHHHHHHHHhh--CCCcEEEEccCCCChhhhhc
Confidence 8999999999977776655543 36667788888775443 3333 333333210 0144443332 33
Q ss_pred CCeeeEecCCCCCHHHHHHHHHHHHHcCCeeEEEcCCCCc-----cccccc----HHHHHHHHHHHHc-CCCHHHHHHHH
Q 007805 453 MPLLEIVRTERTSAQVILDLMTVGKIIKKVPVVVGNCTGF-----AVNRAF----FPYSQSARLLVSL-GVDVFRIDSAI 522 (589)
Q Consensus 453 ~~lveiv~~~~t~~e~~~~~~~l~~~lG~~~v~v~d~~Gf-----i~nRi~----~~~~~Ea~~l~~~-Gv~~~~iD~~~ 522 (589)
+.+..++.| +++.+++++++++.+|++++++...+|- ++|.++ ...+.|++.+.+. |++++.+-.++
T Consensus 456 G~L~imvgG---~~~~~~~~~plL~~lg~~i~~~~g~~G~a~~~KL~nN~l~~~~~aa~aEal~la~k~Gld~~~l~evl 532 (1378)
T PLN02858 456 GTLTIMASG---TDEALKSAGSVLSALSEKLYVIKGGCGAGSGVKMVNQLLAGVHIASAAEAMAFGARLGLNTRKLFDII 532 (1378)
T ss_pred CCceEEEEC---CHHHHHHHHHHHHHHhCcEEEeCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHH
Confidence 445556666 7889999999999999988876443442 334443 3345699988866 99999987777
Q ss_pred -HhcC
Q 007805 523 -RSFG 526 (589)
Q Consensus 523 -~~~g 526 (589)
.+.|
T Consensus 533 ~~s~g 537 (1378)
T PLN02858 533 SNAGG 537 (1378)
T ss_pred Hhhcc
Confidence 5544
No 168
>PRK14806 bifunctional cyclohexadienyl dehydrogenase/ 3-phosphoshikimate 1-carboxyvinyltransferase; Provisional
Probab=99.31 E-value=3.4e-11 Score=138.47 Aligned_cols=156 Identities=17% Similarity=0.177 Sum_probs=118.1
Q ss_pred ccceEEEEcCCCCcHHHHHHHHhCC--CeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-c
Q 007805 307 GVRKVAVIGGGLMGSGIATAHILNN--IYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-S 383 (589)
Q Consensus 307 ~~~kI~IIG~G~mG~~iA~~l~~~G--~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~ 383 (589)
.+++|+|||+|.||.++|..+.++| ++|++||+++++++.+. +.|... ...++. +
T Consensus 2 ~~~~I~IIG~G~mG~ala~~l~~~G~~~~V~~~d~~~~~~~~a~-----------~~g~~~-----------~~~~~~~~ 59 (735)
T PRK14806 2 LFGRVVVIGLGLIGGSFAKALRERGLAREVVAVDRRAKSLELAV-----------SLGVID-----------RGEEDLAE 59 (735)
T ss_pred CCcEEEEEeeCHHHHHHHHHHHhcCCCCEEEEEECChhHHHHHH-----------HCCCCC-----------cccCCHHH
Confidence 3588999999999999999999998 48999999998866642 122110 122333 5
Q ss_pred CCCCCCEEEEeccCChHHHHHHHHHHHHhCCCCcEEEecCCC--CCHHHHhcccC-CCCcEEEecCCCCCC---------
Q 007805 384 EFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTST--IDLNIVGEKTS-SQDRIIGAHFFSPAH--------- 451 (589)
Q Consensus 384 ~~~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~--~~~~~~~~~~~-~~~r~ig~h~~~p~~--------- 451 (589)
.++++|+||+|+| +....++++++.++++++++|++.+|. ...+.+...+. ...||++.||+..+.
T Consensus 60 ~~~~aDvVilavp--~~~~~~vl~~l~~~~~~~~ii~d~~svk~~~~~~l~~~~~~~~~r~~~~hPm~G~~~~g~~~a~~ 137 (735)
T PRK14806 60 AVSGADVIVLAVP--VLAMEKVLADLKPLLSEHAIVTDVGSTKGNVVDAARAVFGELPAGFVPGHPIAGSEKSGVHAANA 137 (735)
T ss_pred HhcCCCEEEECCC--HHHHHHHHHHHHHhcCCCcEEEEcCCCchHHHHHHHHhccccCCeEEecCCcCcCCcchhhhhhh
Confidence 5789999999999 556789999999999888887655443 22555655543 356899999975332
Q ss_pred ---CCCeeeEecCCCCCHHHHHHHHHHHHHcCCeeEEE
Q 007805 452 ---VMPLLEIVRTERTSAQVILDLMTVGKIIKKVPVVV 486 (589)
Q Consensus 452 ---~~~lveiv~~~~t~~e~~~~~~~l~~~lG~~~v~v 486 (589)
....+.+++...++++..+.+.++++.+|+.++++
T Consensus 138 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~G~~~~~~ 175 (735)
T PRK14806 138 DLFRNHKVILTPLAETDPAALARVDRLWRAVGADVLHM 175 (735)
T ss_pred HHhCCCeEEEECCCCCCHHHHHHHHHHHHHcCCEEEEc
Confidence 23455788888899999999999999999999888
No 169
>PRK15182 Vi polysaccharide biosynthesis protein TviB; Provisional
Probab=99.31 E-value=3.2e-11 Score=128.51 Aligned_cols=196 Identities=16% Similarity=0.094 Sum_probs=122.3
Q ss_pred ceEEEEcCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCC-----CHHHHHHHhhcccccCCcc
Q 007805 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKL-----TQDKANNALKMLKGVLDYS 383 (589)
Q Consensus 309 ~kI~IIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~-----~~~~~~~~~~~i~~~~~~~ 383 (589)
+||+|||+|.||.++|..|++ ||+|++||+++++++... .|.. ...+... .+++.++++.+
T Consensus 7 mkI~vIGlGyvGlpmA~~la~-~~~V~g~D~~~~~ve~l~------------~G~~~~~e~~~~~l~~-~g~l~~t~~~~ 72 (425)
T PRK15182 7 VKIAIIGLGYVGLPLAVEFGK-SRQVVGFDVNKKRILELK------------NGVDVNLETTEEELRE-ARYLKFTSEIE 72 (425)
T ss_pred CeEEEECcCcchHHHHHHHhc-CCEEEEEeCCHHHHHHHH------------CcCCCCCCCCHHHHHh-hCCeeEEeCHH
Confidence 579999999999999999887 699999999999988753 2221 0111111 24567777777
Q ss_pred CCCCCCEEEEeccCCh--------HHHHHHHHHHHHhCCCCcEEEecCCCCCH--HHH-hcccCC------CCcEEEecC
Q 007805 384 EFKDVDMVIEAVIESV--------PLKQKIFSELEKACPPHCILATNTSTIDL--NIV-GEKTSS------QDRIIGAHF 446 (589)
Q Consensus 384 ~~~~aDlVIeavpe~~--------~~k~~v~~~l~~~~~~~~ii~s~ts~~~~--~~~-~~~~~~------~~r~ig~h~ 446 (589)
.+++||+||.|||+.. .......+.|.++++++.+++..|+..+- .++ ...+.. ...|.-.|
T Consensus 73 ~~~~advvii~Vptp~~~~~~~dl~~v~~a~~~i~~~l~~g~lVI~~STv~pgtt~~~~~~~l~~~~g~~~~~~~~~~~- 151 (425)
T PRK15182 73 KIKECNFYIITVPTPINTYKQPDLTPLIKASETVGTVLNRGDIVVYESTVYPGCTEEECVPILARMSGMTFNQDFYVGY- 151 (425)
T ss_pred HHcCCCEEEEEcCCCCCCCCCcchHHHHHHHHHHHHhcCCCCEEEEecCCCCcchHHHHHHHHHhccCCCcCCCeeEee-
Confidence 7899999999999652 22233346788899988877643332221 111 111111 11122221
Q ss_pred CCCCCCC---------CeeeEecCCCCCHHHHHHHHHHHHHcC-CeeEEEcCC-C----Cccccccc---HHHHHHHHHH
Q 007805 447 FSPAHVM---------PLLEIVRTERTSAQVILDLMTVGKIIK-KVPVVVGNC-T----GFAVNRAF---FPYSQSARLL 508 (589)
Q Consensus 447 ~~p~~~~---------~lveiv~~~~t~~e~~~~~~~l~~~lG-~~~v~v~d~-~----Gfi~nRi~---~~~~~Ea~~l 508 (589)
+|.... .+-.++.| .+++..+.+.++++.+. ..++++.+. . .++.|-+. .+++||+..+
T Consensus 152 -~PE~v~~G~a~~~~~~~~riv~G--~~~~~~~~~~~ly~~~~~~~~~~~~~~~~AE~~Kl~~N~~~av~Ia~~NE~a~l 228 (425)
T PRK15182 152 -SPERINPGDKKHRLTNIKKITSG--STAQIAELIDEVYQQIISAGTYKAESIKVAEAAKVIENTQRDLNIALVNELAII 228 (425)
T ss_pred -CCCcCCCCcccccccCCCeEEEC--CCHHHHHHHHHHHHHHhhcCcEEecCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111111 11124555 35788899999999986 345555431 1 23334443 5678999988
Q ss_pred HHc-CCCHHHHHHHH
Q 007805 509 VSL-GVDVFRIDSAI 522 (589)
Q Consensus 509 ~~~-Gv~~~~iD~~~ 522 (589)
.++ |+++.++=.++
T Consensus 229 ae~~GiD~~~v~~a~ 243 (425)
T PRK15182 229 FNRLNIDTEAVLRAA 243 (425)
T ss_pred HHHhCcCHHHHHHHh
Confidence 877 99998887766
No 170
>PTZ00431 pyrroline carboxylate reductase; Provisional
Probab=99.30 E-value=5.3e-11 Score=119.22 Aligned_cols=181 Identities=14% Similarity=0.093 Sum_probs=129.9
Q ss_pred ceEEEEcCCCCcHHHHHHHHhCCC----eEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-c
Q 007805 309 RKVAVIGGGLMGSGIATAHILNNI----YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-S 383 (589)
Q Consensus 309 ~kI~IIG~G~mG~~iA~~l~~~G~----~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~ 383 (589)
+||+|||+|+||++|+..+.++|. +++++|+++++.. .....+. +
T Consensus 4 mkI~iIG~G~mG~ai~~~l~~~~~~~~~~i~~~~~~~~~~~------------------------------~~~~~~~~~ 53 (260)
T PTZ00431 4 IRVGFIGLGKMGSALAYGIENSNIIGKENIYYHTPSKKNTP------------------------------FVYLQSNEE 53 (260)
T ss_pred CEEEEECccHHHHHHHHHHHhCCCCCcceEEEECCChhcCC------------------------------eEEeCChHH
Confidence 479999999999999999999873 4999998865310 0112232 4
Q ss_pred CCCCCCEEEEeccCChHHHHHHHHHHHHhCCCCcEEEecCCCCCHHHHhcccCCCCcEEEecCCCCCCCCCeee-EecCC
Q 007805 384 EFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLE-IVRTE 462 (589)
Q Consensus 384 ~~~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~~~~~~~~~~~r~ig~h~~~p~~~~~lve-iv~~~ 462 (589)
.++++|+||+|+| +....+++.++.++++++ +|+|..+++..+.+...++...+++...|..|........ ++++.
T Consensus 54 ~~~~~D~Vilavk--p~~~~~vl~~i~~~l~~~-~iIS~~aGi~~~~l~~~~~~~~~vvr~mPn~p~~~g~g~t~i~~~~ 130 (260)
T PTZ00431 54 LAKTCDIIVLAVK--PDLAGKVLLEIKPYLGSK-LLISICGGLNLKTLEEMVGVEAKIVRVMPNTPSLVGQGSLVFCANN 130 (260)
T ss_pred HHHhCCEEEEEeC--HHHHHHHHHHHHhhccCC-EEEEEeCCccHHHHHHHcCCCCeEEEECCCchhHhcceeEEEEeCC
Confidence 5678999999998 777889999999888764 5678899999998888776555677888888876665554 45677
Q ss_pred CCCHHHHHHHHHHHHHcCCeeEEEcC-CCCccc-c---cccHHHHHHHH--HHHHcCCCHHHHHHHH
Q 007805 463 RTSAQVILDLMTVGKIIKKVPVVVGN-CTGFAV-N---RAFFPYSQSAR--LLVSLGVDVFRIDSAI 522 (589)
Q Consensus 463 ~t~~e~~~~~~~l~~~lG~~~v~v~d-~~Gfi~-n---Ri~~~~~~Ea~--~l~~~Gv~~~~iD~~~ 522 (589)
.++++..+.+..+++.+|....+-.+ ...+.+ . --+..++.|++ ..+..|++.++.-++.
T Consensus 131 ~~~~~~~~~v~~l~~~~G~~~~v~E~~~d~~ta~~gsgPA~~~~~~~al~~~~v~~Gl~~~~a~~l~ 197 (260)
T PTZ00431 131 NVDSTDKKKVIDIFSACGIIQEIKEKDMDIATAISGCGPAYVFLFIESLIDAGVKNGLNRDVSKNLV 197 (260)
T ss_pred CCCHHHHHHHHHHHHhCCcEEEEChHHcchhhhhcCCHHHHHHHHHHHHHHHHHHcCCCHHHHHHHH
Confidence 78899999999999999998876321 111111 0 11233444554 4556688777766655
No 171
>KOG1683 consensus Hydroxyacyl-CoA dehydrogenase/enoyl-CoA hydratase [Lipid transport and metabolism]
Probab=99.30 E-value=1.2e-12 Score=130.66 Aligned_cols=171 Identities=16% Similarity=0.112 Sum_probs=131.6
Q ss_pred CcEEEEEeCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCC-CCCcCCCCchhhhhccCCCcccccchhHHHHHH
Q 007805 13 DGVAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNG-GRFSGGFDINVFQKVHGAGDVSLMPDVSVELVV 91 (589)
Q Consensus 13 ~~v~~i~l~~p~~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g-~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 91 (589)
.+++.+.++ |+.|..|.++..+|..-++.+..+..+++..+|+.. +.|++|.|..++.-..... .......+++++
T Consensus 65 ~~~~~~dmv-ieav~edl~Lk~~l~~~le~v~~~~~i~gsntSs~~~~~isa~ld~~e~vvg~h~f-spa~~m~LlEii- 141 (380)
T KOG1683|consen 65 TGFANADMV-IEAVFEDLELKHELFKSLEKVEPPKCIRGSNTSSLDINVISAGLDRPEMVVGMHFF-SPAHWMQLLEII- 141 (380)
T ss_pred cccccccee-ccchhhhHHHHHHHHHHHHhhcCCcceeeeccccCChHHHhhccCchhhhcccccc-CHHHHHHHHHHH-
Confidence 368888887 889999999999999999999999999999999876 6799999998876532211 111122345666
Q ss_pred HHHHhCCCcEEEEeCCcccchh--hHHhhhcCEEEEe--CCceEeccccccCCCCChhhhhhHhhhcCHHHHHHHHHcCC
Q 007805 92 NLIEDCKKPIVAAVEGLALGGG--LELAMGCHARIAA--PKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSK 167 (589)
Q Consensus 92 ~~l~~~~kp~iaav~G~a~GgG--~~lala~D~~ia~--~~a~~~~pe~~~Gl~p~~g~~~~l~~~~G~~~a~~l~ltg~ 167 (589)
....+++.|+.+|+||.+--|+ +-++.+|+|++.. ..-..+..+..+++.-+..-.-.+...+|...+-.-+-.+.
T Consensus 142 ~~~~tS~~~iA~Ain~~~~~gk~~vvVg~c~gf~v~r~l~~y~~~~~~~l~e~g~~p~~iD~~~t~fGf~~g~~~L~d~~ 221 (380)
T KOG1683|consen 142 LALYTSKLTIATAINGGSPAGKLPVVVGNCCGFRVNRLLPPYTIGLNELLLEIGADPWLIDSLITKFGFRVGERALADGV 221 (380)
T ss_pred HhcCCCchHHHHHHhcccccCCccEEeccCCceEEEecccHHHHHHHHHHHHcCCCHHHHHHHHHhcCccccHHHHhhcc
Confidence 5688999999999999999998 8899999999988 44444677888774333333344555567666667777888
Q ss_pred CCCHHHHHHcCCcceecCc
Q 007805 168 SITSEEGWKLGLIDAVVTS 186 (589)
Q Consensus 168 ~~~a~~A~~~Glv~~vv~~ 186 (589)
-++..||++-|+++++.|.
T Consensus 222 gfdv~eal~~gl~~~~~~r 240 (380)
T KOG1683|consen 222 GFDVAEALAVGLGDEIGPR 240 (380)
T ss_pred CccHHHHHhhccchhccch
Confidence 8899999999988887654
No 172
>COG0677 WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=99.29 E-value=1.8e-10 Score=116.42 Aligned_cols=198 Identities=20% Similarity=0.218 Sum_probs=131.8
Q ss_pred ceEEEEcCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCC-----CHHH---HHHHhhcccccC
Q 007805 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKL-----TQDK---ANNALKMLKGVL 380 (589)
Q Consensus 309 ~kI~IIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~-----~~~~---~~~~~~~i~~~~ 380 (589)
.+|+|||+|.+|.++|..++++|++|+++|+|+.+.+... .|.. +.++ .....+++++++
T Consensus 10 ~~I~ViGLGYVGLPlA~~fA~~G~~ViG~DIn~~~Vd~ln------------~G~~~i~e~~~~~~v~~~v~~g~lraTt 77 (436)
T COG0677 10 ATIGVIGLGYVGLPLAAAFASAGFKVIGVDINQKKVDKLN------------RGESYIEEPDLDEVVKEAVESGKLRATT 77 (436)
T ss_pred eEEEEEccccccHHHHHHHHHcCCceEeEeCCHHHHHHHh------------CCcceeecCcHHHHHHHHHhcCCceEec
Confidence 7899999999999999999999999999999999988743 2221 1111 111225788999
Q ss_pred CccCCCCCCEEEEeccC--------ChHHHHHHHHHHHHhCCCCcEEEecCCCCCH--HHHh----cc---cCCCCcEEE
Q 007805 381 DYSEFKDVDMVIEAVIE--------SVPLKQKIFSELEKACPPHCILATNTSTIDL--NIVG----EK---TSSQDRIIG 443 (589)
Q Consensus 381 ~~~~~~~aDlVIeavpe--------~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~--~~~~----~~---~~~~~r~ig 443 (589)
|.+.++.||++|+|||. |+.......+.|.++++++.+++--|++.|- +++. +. +..+..|.-
T Consensus 78 d~~~l~~~dv~iI~VPTPl~~~~~pDls~v~~aa~sIa~~L~kG~LVIlEST~~PGTTe~v~~plle~~sgL~~~~Df~l 157 (436)
T COG0677 78 DPEELKECDVFIICVPTPLKKYREPDLSYVESAARSIAPVLKKGDLVILESTTPPGTTEEVVKPLLEERSGLKFGEDFYL 157 (436)
T ss_pred ChhhcccCCEEEEEecCCcCCCCCCChHHHHHHHHHHHHhcCCCCEEEEecCCCCCcHHHHHHHHHhhcCCCcccceeeE
Confidence 99999999999999997 5566677778899999999988744433332 2222 21 222223322
Q ss_pred ecCCCCCCCCC---eee------EecCCCCCHHHHHHHHHHHHHcCCeeEEEcCCC-----Cccccc---ccHHHHHHHH
Q 007805 444 AHFFSPAHVMP---LLE------IVRTERTSAQVILDLMTVGKIIKKVPVVVGNCT-----GFAVNR---AFFPYSQSAR 506 (589)
Q Consensus 444 ~h~~~p~~~~~---lve------iv~~~~t~~e~~~~~~~l~~~lG~~~v~v~d~~-----Gfi~nR---i~~~~~~Ea~ 506 (589)
.| .|-+..| +.| ++.| .+++..+.+..|++.+-+..+.+.+.. ...-|- +-.+++||-.
T Consensus 158 ay--sPERv~PG~~~~el~~~~kVIgG--~tp~~~e~a~~lY~~iv~~~~~vts~~tAEm~Kl~EN~fRdVNIALaNEla 233 (436)
T COG0677 158 AY--SPERVLPGNVLKELVNNPKVIGG--VTPKCAELAAALYKTIVEGVIPVTSARTAEMVKLTENTFRDVNIALANELA 233 (436)
T ss_pred ee--CccccCCCchhhhhhcCCceeec--CCHHHHHHHHHHHHHheEEEEEcCChHHHHHHHHHhhhhhHHHHHHHHHHH
Confidence 22 2221111 122 3333 589999999999999877766654422 111122 2367889977
Q ss_pred HHHHc-CCCHHH-HHHHH
Q 007805 507 LLVSL-GVDVFR-IDSAI 522 (589)
Q Consensus 507 ~l~~~-Gv~~~~-iD~~~ 522 (589)
.++++ |++..+ |+.+-
T Consensus 234 li~~~~GIdvwevIeaAn 251 (436)
T COG0677 234 LICNAMGIDVWEVIEAAN 251 (436)
T ss_pred HHHHHhCCcHHHHHHHhc
Confidence 66655 997755 55554
No 173
>COG0240 GpsA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=99.28 E-value=1e-11 Score=124.36 Aligned_cols=170 Identities=18% Similarity=0.158 Sum_probs=115.3
Q ss_pred cceEEEEcCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cCCC
Q 007805 308 VRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFK 386 (589)
Q Consensus 308 ~~kI~IIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~ 386 (589)
++||+|||+|.||+++|..|+++||+|++|.++++..++.....++ .+++. |.. ....+.+++|+ ++++
T Consensus 1 ~~kI~ViGaGswGTALA~~la~ng~~V~lw~r~~~~~~~i~~~~~N--~~yLp-~i~-------lp~~l~at~Dl~~a~~ 70 (329)
T COG0240 1 MMKIAVIGAGSWGTALAKVLARNGHEVRLWGRDEEIVAEINETREN--PKYLP-GIL-------LPPNLKATTDLAEALD 70 (329)
T ss_pred CceEEEEcCChHHHHHHHHHHhcCCeeEEEecCHHHHHHHHhcCcC--ccccC-Ccc-------CCcccccccCHHHHHh
Confidence 3689999999999999999999999999999999998885443111 11222 111 12467888898 7788
Q ss_pred CCCEEEEeccCChHHHHHHHHHHHHhCCCCcEEEecCCCCCHH------HH-hcccCCCCcEEE-ecCCCCC---CCCCe
Q 007805 387 DVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLN------IV-GEKTSSQDRIIG-AHFFSPA---HVMPL 455 (589)
Q Consensus 387 ~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~------~~-~~~~~~~~r~ig-~h~~~p~---~~~~l 455 (589)
+||+|+.+|| ....+++++++.+++++++++++.++++... ++ .+.++.. ++.. .-|.... .-.|.
T Consensus 71 ~ad~iv~avP--s~~~r~v~~~l~~~l~~~~~iv~~sKGie~~t~~l~seii~e~l~~~-~~~vLSGPs~A~EVa~g~pt 147 (329)
T COG0240 71 GADIIVIAVP--SQALREVLRQLKPLLLKDAIIVSATKGLEPETGRLLSEIIEEELPDN-PIAVLSGPSFAKEVAQGLPT 147 (329)
T ss_pred cCCEEEEECC--hHHHHHHHHHHhhhccCCCeEEEEeccccCCCcchHHHHHHHHcCCC-eEEEEECccHHHHHhcCCCc
Confidence 8999999999 6678899999998999999999988876643 32 2223321 1111 1111100 11111
Q ss_pred eeEecCCCCCHHHHHHHHHHHHHcCCeeEEEcCCCCc
Q 007805 456 LEIVRTERTSAQVILDLMTVGKIIKKVPVVVGNCTGF 492 (589)
Q Consensus 456 veiv~~~~t~~e~~~~~~~l~~~lG~~~v~v~d~~Gf 492 (589)
..++. ..+++..+.++.++..=-.+++...|..|-
T Consensus 148 a~~va--s~d~~~a~~v~~~f~~~~Frvy~~~Dv~Gv 182 (329)
T COG0240 148 AVVVA--SNDQEAAEKVQALFSSPYFRVYTSTDVIGV 182 (329)
T ss_pred EEEEe--cCCHHHHHHHHHHhCCCcEEEEecCchhhh
Confidence 11222 247888888888888766677777777664
No 174
>cd05297 GH4_alpha_glucosidase_galactosidase Glycoside Hydrolases Family 4; Alpha-glucosidases and alpha-galactosidases. linked to 3D####ucture
Probab=99.28 E-value=5.4e-13 Score=142.37 Aligned_cols=160 Identities=15% Similarity=0.130 Sum_probs=120.3
Q ss_pred eEEEEcCCCCcHHHHH--HH----HhCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-
Q 007805 310 KVAVIGGGLMGSGIAT--AH----ILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY- 382 (589)
Q Consensus 310 kI~IIG~G~mG~~iA~--~l----~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~- 382 (589)
||+|||+|.||.+++. .+ +.+|++|++||++++.++.....++..+. .... ..++..++|+
T Consensus 2 KIaIIGaGs~G~a~a~~~~i~~~~~~~g~eV~L~Did~e~l~~~~~~~~~~~~----~~~~--------~~~I~~ttD~~ 69 (423)
T cd05297 2 KIAFIGAGSVVFTKNLVGDLLKTPELSGSTIALMDIDEERLETVEILAKKIVE----ELGA--------PLKIEATTDRR 69 (423)
T ss_pred eEEEECCChHHhHHHHHHHHhcCCCCCCCEEEEECCCHHHHHHHHHHHHHHHH----hcCC--------CeEEEEeCCHH
Confidence 7999999999998666 33 45588999999999998886655543332 1111 1467778887
Q ss_pred cCCCCCCEEEEecc----------CChHHHHHHHHHHHHhCCCCcEEEecCCCCCHHHHhcccCC--CCcEEEecCCCCC
Q 007805 383 SEFKDVDMVIEAVI----------ESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSS--QDRIIGAHFFSPA 450 (589)
Q Consensus 383 ~~~~~aDlVIeavp----------e~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~~~~~~~~~--~~r~ig~h~~~p~ 450 (589)
+++++||+||++++ |++.+|..+++++.+.+++++++.+++|...+.+++..+.. | +.+.+||.||+
T Consensus 70 eal~~AD~Vi~ai~~~~~~~~~~de~i~~K~g~~~~~~~t~g~ggi~~~~~s~~~i~~ia~~i~~~~p-~a~~i~~tNPv 148 (423)
T cd05297 70 EALDGADFVINTIQVGGHEYTETDFEIPEKYGYYQTVGDTSGPGGIFRALRTIPVLLDIARDIEELCP-DAWLLNYANPM 148 (423)
T ss_pred HHhcCCCEEEEeeEecCccchhhhhhhHHHcCeeeeccCCCcHHHHHHHHhhHHHHHHHHHHHHHHCC-CCEEEEcCChH
Confidence 78999999999998 45889999999999999999999999999899888877753 6 89999999999
Q ss_pred CCC-----CeeeEecCCCCCHHHHHHHHHHHHHcCCee
Q 007805 451 HVM-----PLLEIVRTERTSAQVILDLMTVGKIIKKVP 483 (589)
Q Consensus 451 ~~~-----~lveiv~~~~t~~e~~~~~~~l~~~lG~~~ 483 (589)
..+ +..+ ++.-++..........+.+.+|..+
T Consensus 149 ~i~t~~~~k~~~-~rviG~c~~~~~~~~~~a~~l~~~~ 185 (423)
T cd05297 149 AELTWALNRYTP-IKTVGLCHGVQGTAEQLAKLLGEPP 185 (423)
T ss_pred HHHHHHHHHhCC-CCEEEECCcHHHHHHHHHHHhCCCH
Confidence 665 3332 2222223335566667777788643
No 175
>PF02153 PDH: Prephenate dehydrogenase; InterPro: IPR003099 Members of this family are prephenate dehydrogenases 1.3.1.12 from EC involved in tyrosine biosynthesis. ; GO: 0004665 prephenate dehydrogenase (NADP+) activity, 0008977 prephenate dehydrogenase activity, 0006571 tyrosine biosynthetic process, 0055114 oxidation-reduction process; PDB: 2F1K_B 2PV7_A 3DZB_B 3KTD_B 3B1F_A 2G5C_D 3GGP_C 3GGG_C 3GGO_D.
Probab=99.27 E-value=4.3e-11 Score=119.63 Aligned_cols=140 Identities=17% Similarity=0.137 Sum_probs=104.2
Q ss_pred HHHHHHhCC--CeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCccCCCCCCEEEEeccCChH
Q 007805 323 IATAHILNN--IYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKDVDMVIEAVIESVP 400 (589)
Q Consensus 323 iA~~l~~~G--~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~aDlVIeavpe~~~ 400 (589)
||..|.++| ++|++||++++.++.+ .+.|.++ ...++.+.++++|+||+|+| +.
T Consensus 1 ~A~aL~~~g~~~~v~g~d~~~~~~~~a-----------~~~g~~~-----------~~~~~~~~~~~~DlvvlavP--~~ 56 (258)
T PF02153_consen 1 IALALRKAGPDVEVYGYDRDPETLEAA-----------LELGIID-----------EASTDIEAVEDADLVVLAVP--VS 56 (258)
T ss_dssp HHHHHHHTTTTSEEEEE-SSHHHHHHH-----------HHTTSSS-----------EEESHHHHGGCCSEEEE-S---HH
T ss_pred ChHHHHhCCCCeEEEEEeCCHHHHHHH-----------HHCCCee-----------eccCCHhHhcCCCEEEEcCC--HH
Confidence 688899998 7999999999988776 3344332 11222467899999999999 88
Q ss_pred HHHHHHHHHHHhCCCCcEEEecCCC--CCHHHHhcccCCCCcEEEecCCCCC------------CCCCeeeEecCCCCCH
Q 007805 401 LKQKIFSELEKACPPHCILATNTST--IDLNIVGEKTSSQDRIIGAHFFSPA------------HVMPLLEIVRTERTSA 466 (589)
Q Consensus 401 ~k~~v~~~l~~~~~~~~ii~s~ts~--~~~~~~~~~~~~~~r~ig~h~~~p~------------~~~~lveiv~~~~t~~ 466 (589)
...++++++.++++++++|++.+|. .++..+....+...+|++.||+..+ ..+..+.++|++.+++
T Consensus 57 ~~~~~l~~~~~~~~~~~iv~Dv~SvK~~~~~~~~~~~~~~~~~v~~HPM~G~e~~G~~~a~~~lf~g~~~il~p~~~~~~ 136 (258)
T PF02153_consen 57 AIEDVLEEIAPYLKPGAIVTDVGSVKAPIVEAMERLLPEGVRFVGGHPMAGPEKSGPEAADADLFEGRNWILCPGEDTDP 136 (258)
T ss_dssp HHHHHHHHHHCGS-TTSEEEE--S-CHHHHHHHHHHHTSSGEEEEEEESCSTSSSSGGG-TTTTTTTSEEEEEECTTS-H
T ss_pred HHHHHHHHhhhhcCCCcEEEEeCCCCHHHHHHHHHhcCcccceeecCCCCCCccccchhhcccccCCCeEEEeCCCCChH
Confidence 8999999999999999999877764 3445566666656799999997666 2456778899999999
Q ss_pred HHHHHHHHHHHHcCCeeEEE
Q 007805 467 QVILDLMTVGKIIKKVPVVV 486 (589)
Q Consensus 467 e~~~~~~~l~~~lG~~~v~v 486 (589)
+.++.+.++++.+|.+++.+
T Consensus 137 ~~~~~~~~l~~~~Ga~~~~~ 156 (258)
T PF02153_consen 137 EALELVEELWEALGARVVEM 156 (258)
T ss_dssp HHHHHHHHHHHHCT-EEEE-
T ss_pred HHHHHHHHHHHHCCCEEEEc
Confidence 99999999999999999987
No 176
>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=99.26 E-value=7.1e-11 Score=119.93 Aligned_cols=198 Identities=19% Similarity=0.276 Sum_probs=135.4
Q ss_pred ceEEEEcCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHH----HHHHHhhHhcCCCCHHHHHHHhhcccccCCc-c
Q 007805 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTI----EANVRGLVTRGKLTQDKANNALKMLKGVLDY-S 383 (589)
Q Consensus 309 ~kI~IIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~----~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~ 383 (589)
+||+|||.|..|...+.+|+..||+|+.+|+++++++...+.. +..++++++++..+ +|+++|+|+ +
T Consensus 1 MkI~viGtGYVGLv~g~~lA~~GHeVv~vDid~~KV~~ln~g~~PI~EpgLe~ll~~~~~~--------gRl~fTtd~~~ 72 (414)
T COG1004 1 MKITVIGTGYVGLVTGACLAELGHEVVCVDIDESKVELLNKGISPIYEPGLEELLKENLAS--------GRLRFTTDYEE 72 (414)
T ss_pred CceEEECCchHHHHHHHHHHHcCCeEEEEeCCHHHHHHHhCCCCCCcCccHHHHHHhcccc--------CcEEEEcCHHH
Confidence 5799999999999999999999999999999999998865432 33344444444322 579999999 6
Q ss_pred CCCCCCEEEEeccC--------ChHHHHHHHHHHHHhCCCCcEEEecCCCCCHH---HHhcccC--CCCc-E-EEec---
Q 007805 384 EFKDVDMVIEAVIE--------SVPLKQKIFSELEKACPPHCILATNTSTIDLN---IVGEKTS--SQDR-I-IGAH--- 445 (589)
Q Consensus 384 ~~~~aDlVIeavpe--------~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~---~~~~~~~--~~~r-~-ig~h--- 445 (589)
+++++|++|+|||+ |......+.++|.++++..++|+ +-|++|+. .+..... .+.+ | +.+.
T Consensus 73 a~~~adv~fIavgTP~~~dg~aDl~~V~ava~~i~~~~~~~~vvV-~KSTVPvGt~~~v~~~i~~~~~~~~f~v~~NPEF 151 (414)
T COG1004 73 AVKDADVVFIAVGTPPDEDGSADLSYVEAVAKDIGEILDGKAVVV-IKSTVPVGTTEEVRAKIREENSGKDFEVASNPEF 151 (414)
T ss_pred HHhcCCEEEEEcCCCCCCCCCccHHHHHHHHHHHHhhcCCCeEEE-EcCCCCCCchHHHHHHHHhhcccCCceEecChHH
Confidence 79999999999987 55567788889999998876654 45666653 2222111 1111 0 1222
Q ss_pred ---------CCCCCCCCCeeeEecCCCCCHHHHHHHHHHHHHc--CCeeEEEcCC-----CCccccccc---HHHHHHHH
Q 007805 446 ---------FFSPAHVMPLLEIVRTERTSAQVILDLMTVGKII--KKVPVVVGNC-----TGFAVNRAF---FPYSQSAR 506 (589)
Q Consensus 446 ---------~~~p~~~~~lveiv~~~~t~~e~~~~~~~l~~~l--G~~~v~v~d~-----~Gfi~nRi~---~~~~~Ea~ 506 (589)
|++|..+ |+.. . ++++.+.+.++++.+ ...|++..+. -.+..|-++ .+++||-.
T Consensus 152 LREG~Av~D~~~PdRI-----ViG~-~-~~~a~~~~~ely~~~~~~~~p~l~t~~~~AE~IKyaaNafLAtKIsFiNEia 224 (414)
T COG1004 152 LREGSAVYDFLYPDRI-----VIGV-R-SERAAAVLRELYAPFLRQDVPILFTDLREAELIKYAANAFLATKISFINEIA 224 (414)
T ss_pred hcCcchhhhccCCCeE-----EEcc-C-ChhHHHHHHHHHhhhhhcCCCEEEecchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2455442 3433 2 334667777777665 4555555332 246677776 36889999
Q ss_pred HHHHc-CCCHHHHHHHH
Q 007805 507 LLVSL-GVDVFRIDSAI 522 (589)
Q Consensus 507 ~l~~~-Gv~~~~iD~~~ 522 (589)
.+++. |++.++|=..+
T Consensus 225 ~ice~~g~D~~~V~~gI 241 (414)
T COG1004 225 NICEKVGADVKQVAEGI 241 (414)
T ss_pred HHHHHhCCCHHHHHHHc
Confidence 88877 99999887766
No 177
>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=99.25 E-value=3.6e-11 Score=124.84 Aligned_cols=196 Identities=13% Similarity=0.065 Sum_probs=118.3
Q ss_pred ceEEEEcCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cCCCC
Q 007805 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD 387 (589)
Q Consensus 309 ~kI~IIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~ 387 (589)
+||+|||+|.||++||..|+++|++|++|+++++..+.......+. .... |. ....++..++++ +.+++
T Consensus 5 m~I~iIG~G~mG~~ia~~L~~~G~~V~~~~r~~~~~~~i~~~~~~~--~~~~-g~-------~~~~~~~~~~~~~e~~~~ 74 (328)
T PRK14618 5 MRVAVLGAGAWGTALAVLAASKGVPVRLWARRPEFAAALAAERENR--EYLP-GV-------ALPAELYPTADPEEALAG 74 (328)
T ss_pred CeEEEECcCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHhCccc--ccCC-CC-------cCCCCeEEeCCHHHHHcC
Confidence 4899999999999999999999999999999988776643211000 0000 10 001124455566 56789
Q ss_pred CCEEEEeccCChHHHHHHHHHHHHhCCCCcEEEecCCCCC-----HHHHhcccCC--CCcE-EEecCCCCCCC---CCee
Q 007805 388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTID-----LNIVGEKTSS--QDRI-IGAHFFSPAHV---MPLL 456 (589)
Q Consensus 388 aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~-----~~~~~~~~~~--~~r~-ig~h~~~p~~~---~~lv 456 (589)
+|+||+|+|++. .+++ .+.+++++++++.++++. ...+++.+.. ..++ +..-|..+... .+..
T Consensus 75 aD~Vi~~v~~~~--~~~v----~~~l~~~~~vi~~~~Gi~~~~~~~~~l~~~l~~~~~~~~~~~~gP~~a~~~~~~~~~~ 148 (328)
T PRK14618 75 ADFAVVAVPSKA--LRET----LAGLPRALGYVSCAKGLAPDGGRLSELARVLEFLTQARVAVLSGPNHAEEIARFLPAA 148 (328)
T ss_pred CCEEEEECchHH--HHHH----HHhcCcCCEEEEEeeccccCCCccchHHHHHHHhcCCCeEEEECccHHHHHHcCCCeE
Confidence 999999999653 2333 355667777777766654 2333333321 0111 11122111111 0112
Q ss_pred eEecCCCCCHHHHHHHHHHHHHcCCeeEEEcCCCCc----------------------cccc---ccHHHHHHHHHHHHc
Q 007805 457 EIVRTERTSAQVILDLMTVGKIIKKVPVVVGNCTGF----------------------AVNR---AFFPYSQSARLLVSL 511 (589)
Q Consensus 457 eiv~~~~t~~e~~~~~~~l~~~lG~~~v~v~d~~Gf----------------------i~nR---i~~~~~~Ea~~l~~~ 511 (589)
.++.+ .+++.++.++++++..|.++.+..|.-|. ..|- ++...++|++.+.+.
T Consensus 149 ~~~~~--~~~~~~~~v~~ll~~~~~~v~~~~di~g~~~~~~lkN~~ai~~G~~~~~k~~~n~~~~~~~~~~~E~~~la~~ 226 (328)
T PRK14618 149 TVVAS--PEPGLARRVQAAFSGPSFRVYTSRDRVGVELGGALKNVIALAAGMVDGLKLGDNAKAALITRGLREMVRFGVA 226 (328)
T ss_pred EEEEe--CCHHHHHHHHHHhCCCcEEEEecCCccchhhhHHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHH
Confidence 22322 37888999999999999888765554441 1122 234445699988866
Q ss_pred -CCCHHHHHHHH
Q 007805 512 -GVDVFRIDSAI 522 (589)
Q Consensus 512 -Gv~~~~iD~~~ 522 (589)
|++++.+-.+.
T Consensus 227 ~G~~~~~~~~~~ 238 (328)
T PRK14618 227 LGAEEATFYGLS 238 (328)
T ss_pred hCCCccchhcCc
Confidence 99888776654
No 178
>cd07018 S49_SppA_67K_type Signal peptide peptidase A (SppA) 67K type, a serine protease, has catalytic Ser-Lys dyad. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV) 67K type: SppA is found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Members in this subfamily contain an amino-terminal domain in addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members (sometimes referred to as 67K type), similar to E. coli and Arabidopsis thaliana SppA peptidases. Unlike the eukaryotic functional homologs that are proposed to be aspartic proteases, site-directed mutagenesis and sequence analysis have shown that members in this subfamily, mostly bacterial, are serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys
Probab=99.24 E-value=5.4e-11 Score=116.10 Aligned_cols=146 Identities=22% Similarity=0.241 Sum_probs=107.6
Q ss_pred CCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCCcCCCCchhhhhccCCCcccccchhHHHHHHHHHHhCCCcEEEEeC
Q 007805 27 ALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVE 106 (589)
Q Consensus 27 ~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kp~iaav~ 106 (589)
.-+..++.+|.+.|+++..|++|++|||+..++.| ++.+++++. +.+ +.++..+|||||.++
T Consensus 25 ~~~~~~~~~l~~~l~~a~~d~~ik~vvL~~~s~gg-~~~~~~el~----------------~~i-~~~~~~~kpVia~~~ 86 (222)
T cd07018 25 ESSELSLRDLLEALEKAAEDDRIKGIVLDLDGLSG-GLAKLEELR----------------QAL-ERFRASGKPVIAYAD 86 (222)
T ss_pred CcCCccHHHHHHHHHHHhcCCCeEEEEEECCCCCC-CHHHHHHHH----------------HHH-HHHHHhCCeEEEEeC
Confidence 34567899999999999999999999999988877 777766652 333 446678999999999
Q ss_pred CcccchhhHHhhhcCEEEEeCCceEeccccc------------cCCCCC---------hhhhh-----------hH----
Q 007805 107 GLALGGGLELAMGCHARIAAPKTQLGLPELT------------LGVIPG---------FGGTQ-----------RL---- 150 (589)
Q Consensus 107 G~a~GgG~~lala~D~~ia~~~a~~~~pe~~------------~Gl~p~---------~g~~~-----------~l---- 150 (589)
| |.+||+.|+++||.+++.+.+.|+..-+. +|+-+. .+..+ .+
T Consensus 87 ~-~~sggy~lasaad~I~a~p~~~vg~iGv~~~~~~~~~ll~klGv~~~~~~~G~~K~~~~~~~~~~~s~~~r~~~~~~l 165 (222)
T cd07018 87 G-YSQGQYYLASAADEIYLNPSGSVELTGLSAETLFFKGLLDKLGVEVQVFRVGEYKSAVEPFTRDDMSPEAREQTQALL 165 (222)
T ss_pred C-CCchhhhhhhhCCEEEECCCceEEeeccchhhhhHHHHHHHcCCcEEEEEEeccccccchhhcccCCHHHHHHHHHHH
Confidence 8 88999999999999999999998875332 222111 01111 00
Q ss_pred -------------hhhcCHHHHHHHHHcCCCCCHHHHHHcCCcceecCchHHHHH
Q 007805 151 -------------PRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKV 192 (589)
Q Consensus 151 -------------~~~~G~~~a~~l~ltg~~~~a~~A~~~Glv~~vv~~~~l~~~ 192 (589)
.|.+..... +-+..|+.+++++|++.||||++...+++.+.
T Consensus 166 ~~~~~~f~~~Va~~R~~~~~~~-~~~~~~~~~~~~~A~~~GLvD~i~~~~e~~~~ 219 (222)
T cd07018 166 DSLWDQYLADVAASRGLSPDAL-EALIDLGGDSAEEALEAGLVDGLAYRDELEAR 219 (222)
T ss_pred HHHHHHHHHHHHHHcCCCHHHH-HHHHHcCCcHHHHHHHCCCCCcCCcHHHHHHH
Confidence 111222222 33445999999999999999999988777654
No 179
>TIGR01915 npdG NADPH-dependent F420 reductase. This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.
Probab=99.24 E-value=1.6e-10 Score=112.82 Aligned_cols=163 Identities=16% Similarity=0.110 Sum_probs=109.1
Q ss_pred ceEEEEc-CCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCccCCCC
Q 007805 309 RKVAVIG-GGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKD 387 (589)
Q Consensus 309 ~kI~IIG-~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~ 387 (589)
+||+||| +|.||+++|..|+++|++|++|++++++.+...+..... ....| +. ..+..+++.+.+++
T Consensus 1 MkI~IIGG~G~mG~ala~~L~~~G~~V~v~~r~~~~~~~l~~~~~~~---~~~~g-~~--------~~~~~~~~~ea~~~ 68 (219)
T TIGR01915 1 MKIAVLGGTGDQGKGLALRLAKAGNKIIIGSRDLEKAEEAAAKALEE---LGHGG-SD--------IKVTGADNAEAAKR 68 (219)
T ss_pred CEEEEEcCCCHHHHHHHHHHHhCCCEEEEEEcCHHHHHHHHHHHHhh---ccccC-CC--------ceEEEeChHHHHhc
Confidence 3799997 899999999999999999999999998876643321110 00011 00 01122333467889
Q ss_pred CCEEEEeccCChHHHHHHHHHHHHhCCCCcEEEecCCCCCH-----------------HHHhcccCCCCcEEEecCCCCC
Q 007805 388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDL-----------------NIVGEKTSSQDRIIGAHFFSPA 450 (589)
Q Consensus 388 aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~-----------------~~~~~~~~~~~r~ig~h~~~p~ 450 (589)
+|+||.|+| .....++++++.+.++. ++|+|.+.++.. +.++..++...+++...++.+.
T Consensus 69 aDvVilavp--~~~~~~~l~~l~~~l~~-~vvI~~~ngi~~~~~~~~~~~~~~~~s~~e~l~~~~p~~~~VVka~~~~~a 145 (219)
T TIGR01915 69 ADVVILAVP--WDHVLKTLESLRDELSG-KLVISPVVPLASDGGKGARYLPPEEGSAAEQAAALLPETSRVVAAFHNLSA 145 (219)
T ss_pred CCEEEEECC--HHHHHHHHHHHHHhccC-CEEEEeccCceecCCCCceecCCCCCcHHHHHHHhCCCCCeEeeccccCCH
Confidence 999999998 66567888888777654 778887777665 3344555433677777654333
Q ss_pred CCC-------CeeeEecCCCCCHHHHHHHHHHHHHc-CCeeEEEcC
Q 007805 451 HVM-------PLLEIVRTERTSAQVILDLMTVGKII-KKVPVVVGN 488 (589)
Q Consensus 451 ~~~-------~lveiv~~~~t~~e~~~~~~~l~~~l-G~~~v~v~d 488 (589)
... +....+.| .++++.+.+.+|.+.+ |..|+.++.
T Consensus 146 ~~~~~~~~~~~~~~~v~G--dd~~ak~~v~~L~~~~~G~~~vd~G~ 189 (219)
T TIGR01915 146 VLLQDVDDEVDCDVLVCG--DDEEAKEVVAELAGRIDGLRALDAGP 189 (219)
T ss_pred HHhcCCCCCCCCCEEEEC--CCHHHHHHHHHHHHhcCCCCcccCCc
Confidence 211 11123333 2677899999999999 999988764
No 180
>PLN02353 probable UDP-glucose 6-dehydrogenase
Probab=99.24 E-value=3.5e-10 Score=121.62 Aligned_cols=200 Identities=17% Similarity=0.194 Sum_probs=128.3
Q ss_pred cceEEEEcCCCCcHHHHHHHHhCC--CeEEEEeCChHHHHHHHHHH----HHHHHhhHhcCCCCHHHHHHHhhcccccCC
Q 007805 308 VRKVAVIGGGLMGSGIATAHILNN--IYVVLKEVNSEYLLKGIKTI----EANVRGLVTRGKLTQDKANNALKMLKGVLD 381 (589)
Q Consensus 308 ~~kI~IIG~G~mG~~iA~~l~~~G--~~V~~~d~~~~~~~~~~~~~----~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~ 381 (589)
++||+|||+|.+|..+|..|+++| ++|+++|+++++++...+.. +..+.+++.+ ..-.+++++++
T Consensus 1 ~m~I~ViG~GyvGl~~A~~lA~~g~g~~V~gvD~~~~~v~~l~~g~~~~~e~gl~ell~~---------~~~~~l~~t~~ 71 (473)
T PLN02353 1 MVKICCIGAGYVGGPTMAVIALKCPDIEVVVVDISVPRIDAWNSDQLPIYEPGLDEVVKQ---------CRGKNLFFSTD 71 (473)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCCCeEEEEECCHHHHHHHHcCCCccCCCCHHHHHHH---------hhcCCEEEEcC
Confidence 468999999999999999999984 78999999999988753321 0011111111 01124788888
Q ss_pred c-cCCCCCCEEEEeccCC-------------hHHHHHHHHHHHHhCCCCcEEEecCCCCCHH---HHhccc---------
Q 007805 382 Y-SEFKDVDMVIEAVIES-------------VPLKQKIFSELEKACPPHCILATNTSTIDLN---IVGEKT--------- 435 (589)
Q Consensus 382 ~-~~~~~aDlVIeavpe~-------------~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~---~~~~~~--------- 435 (589)
+ +++++||++|+|||.. +.......++|.++++++++|+. .|++++. .+...+
T Consensus 72 ~~~~i~~advi~I~V~TP~~~~g~~~~~~~Dls~v~~a~~~i~~~l~~~~lVv~-~STvp~Gtt~~~~~~l~~~~~g~~f 150 (473)
T PLN02353 72 VEKHVAEADIVFVSVNTPTKTRGLGAGKAADLTYWESAARMIADVSKSDKIVVE-KSTVPVKTAEAIEKILTHNSKGINF 150 (473)
T ss_pred HHHHHhcCCEEEEEeCCCCCCCCCcCCCCCcHHHHHHHHHHHHhhCCCCcEEEE-eCCCCCChHHHHHHHHHhhCCCCCe
Confidence 7 5799999999999633 33667888889999999887653 2333322 222111
Q ss_pred ---CCCCcEEEec----CCCCCCCCCeeeEecCCC--CCHHHHHHHHHHHHHcCC-eeEEEc-----CCCCcccccc---
Q 007805 436 ---SSQDRIIGAH----FFSPAHVMPLLEIVRTER--TSAQVILDLMTVGKIIKK-VPVVVG-----NCTGFAVNRA--- 497 (589)
Q Consensus 436 ---~~~~r~ig~h----~~~p~~~~~lveiv~~~~--t~~e~~~~~~~l~~~lG~-~~v~v~-----d~~Gfi~nRi--- 497 (589)
..|+++.-.. +.+|+.+ |+.+.. +.+++.+.+.++++.+-+ .++.+. |-..++.|-.
T Consensus 151 ~v~~~PErl~~G~a~~d~~~p~ri-----ViG~~~~~~~~~a~~~~~~lY~~~~~~~~i~~~s~~~AE~~K~~eN~~ra~ 225 (473)
T PLN02353 151 QILSNPEFLAEGTAIEDLFKPDRV-----LIGGRETPEGQKAVQALKDVYAHWVPEERIITTNLWSAELSKLAANAFLAQ 225 (473)
T ss_pred EEEECCCccCCCCcccccCCCCEE-----EEccCCchhhHHHHHHHHHHHHHhhcCCCEEecCHHHHHHHHHHHHHHHHH
Confidence 1222221111 1333322 334432 236678999999998753 444442 3334555655
Q ss_pred cHHHHHHHHHHHHc-CCCHHHHHHHH
Q 007805 498 FFPYSQSARLLVSL-GVDVFRIDSAI 522 (589)
Q Consensus 498 ~~~~~~Ea~~l~~~-Gv~~~~iD~~~ 522 (589)
-.+++||-..+.+. |+++.++-.++
T Consensus 226 ~Iaf~NEla~lce~~giD~~eV~~~~ 251 (473)
T PLN02353 226 RISSVNAMSALCEATGADVSQVSHAV 251 (473)
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHh
Confidence 36789998888877 99999988887
No 181
>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=99.23 E-value=1.1e-10 Score=119.95 Aligned_cols=167 Identities=14% Similarity=0.112 Sum_probs=109.8
Q ss_pred ceEEEEcCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cCCCC
Q 007805 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD 387 (589)
Q Consensus 309 ~kI~IIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~ 387 (589)
+||+|||+|.||++||..|+.+||+|++|++++. +++ +.+++
T Consensus 5 m~I~iiG~G~~G~~lA~~l~~~G~~V~~~~r~~~-------------------------------------~~~~~~~~~ 47 (308)
T PRK14619 5 KTIAILGAGAWGSTLAGLASANGHRVRVWSRRSG-------------------------------------LSLAAVLAD 47 (308)
T ss_pred CEEEEECccHHHHHHHHHHHHCCCEEEEEeCCCC-------------------------------------CCHHHHHhc
Confidence 5799999999999999999999999999999853 111 44678
Q ss_pred CCEEEEeccCChHHHHHHHHHHHHh-CCCCcEEEecCCCCCHHHHh-------cccCCCCcEEE-ecCCCCC----CCCC
Q 007805 388 VDMVIEAVIESVPLKQKIFSELEKA-CPPHCILATNTSTIDLNIVG-------EKTSSQDRIIG-AHFFSPA----HVMP 454 (589)
Q Consensus 388 aDlVIeavpe~~~~k~~v~~~l~~~-~~~~~ii~s~ts~~~~~~~~-------~~~~~~~r~ig-~h~~~p~----~~~~ 454 (589)
+|+||.|+|. ...+.++.++.++ +++++++++.++++.+.... .... ..+++. ..+..+. ....
T Consensus 48 advvi~~vp~--~~~~~v~~~l~~~~~~~~~ivi~~s~gi~~~~~~~~s~~~~~~~~-~~~v~~i~gp~~a~ei~~~~~~ 124 (308)
T PRK14619 48 ADVIVSAVSM--KGVRPVAEQVQALNLPPETIIVTATKGLDPETTRTPSQIWQAAFP-NHPVVVLSGPNLSKEIQQGLPA 124 (308)
T ss_pred CCEEEEECCh--HHHHHHHHHHHHhcCCCCcEEEEeCCcccCCCCcCHHHHHHHHcC-CCceEEEECCCcHHHHhcCCCe
Confidence 9999999995 4577888888774 67888888877655543211 1111 112211 1111000 0001
Q ss_pred eeeEecCCCCCHHHHHHHHHHHHHcCCeeEEEcCCCC----------------------cccccc---cHHHHHHHHHHH
Q 007805 455 LLEIVRTERTSAQVILDLMTVGKIIKKVPVVVGNCTG----------------------FAVNRA---FFPYSQSARLLV 509 (589)
Q Consensus 455 lveiv~~~~t~~e~~~~~~~l~~~lG~~~v~v~d~~G----------------------fi~nRi---~~~~~~Ea~~l~ 509 (589)
.+-+.. .+++..+.++++++..|.++++..|..| +..|-. +...+.|++.+.
T Consensus 125 ~~~~ag---~~~~~~~~v~~ll~~~~~~~~~~~d~~G~~~~~alkNv~ai~~G~~~~~~l~~N~~~a~~~~~~~E~~~l~ 201 (308)
T PRK14619 125 ATVVAS---RDLAAAETVQQIFSSERFRVYTNSDPLGTELGGTLKNVIAIAAGVCDGLQLGTNAKAALVTRALPEMIRVG 201 (308)
T ss_pred EEEEEe---CCHHHHHHHHHHhCCCcEEEEecCCchhhhhHHHHHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHHHHHH
Confidence 111222 3788999999999999999987777555 222333 233446999888
Q ss_pred Hc-CCCHHHH
Q 007805 510 SL-GVDVFRI 518 (589)
Q Consensus 510 ~~-Gv~~~~i 518 (589)
+. |++++.+
T Consensus 202 ~~~G~~~~t~ 211 (308)
T PRK14619 202 THLGAQTETF 211 (308)
T ss_pred HHhCCCcccc
Confidence 76 8866554
No 182
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=99.22 E-value=4.2e-10 Score=117.57 Aligned_cols=168 Identities=11% Similarity=0.074 Sum_probs=106.9
Q ss_pred cceEEEEcCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCC-CC---HHHHHHHhhcccccCCcc
Q 007805 308 VRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGK-LT---QDKANNALKMLKGVLDYS 383 (589)
Q Consensus 308 ~~kI~IIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~-~~---~~~~~~~~~~i~~~~~~~ 383 (589)
++||+|||+|.||+.+|..|+++|++|++||+++. .+... +.|. +. ..+......++..+++.+
T Consensus 2 ~mkI~IiG~G~mG~~~A~~L~~~G~~V~~~~r~~~-~~~~~-----------~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 69 (341)
T PRK08229 2 MARICVLGAGSIGCYLGGRLAAAGADVTLIGRARI-GDELR-----------AHGLTLTDYRGRDVRVPPSAIAFSTDPA 69 (341)
T ss_pred CceEEEECCCHHHHHHHHHHHhcCCcEEEEecHHH-HHHHH-----------hcCceeecCCCcceecccceeEeccChh
Confidence 46899999999999999999999999999998653 22211 1111 00 000000012344555667
Q ss_pred CCCCCCEEEEeccCChHHHHHHHHHHHHhCCCCcEEEecCCCCCH-HHHhcccCCCCcEEEecCCCCCCCCC-------e
Q 007805 384 EFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDL-NIVGEKTSSQDRIIGAHFFSPAHVMP-------L 455 (589)
Q Consensus 384 ~~~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~-~~~~~~~~~~~r~ig~h~~~p~~~~~-------l 455 (589)
.++++|+||+|++.. ...++++++.++++++++|++.++++.. +.+...++....+.+.+++......+ .
T Consensus 70 ~~~~~D~vil~vk~~--~~~~~~~~l~~~~~~~~iii~~~nG~~~~~~l~~~~~~~~~~~g~~~~~~~~~~pg~~~~~~~ 147 (341)
T PRK08229 70 ALATADLVLVTVKSA--ATADAAAALAGHARPGAVVVSFQNGVRNADVLRAALPGATVLAGMVPFNVISRGPGAFHQGTS 147 (341)
T ss_pred hccCCCEEEEEecCc--chHHHHHHHHhhCCCCCEEEEeCCCCCcHHHHHHhCCCCcEEEEEEEEEEEecCCceEEecCC
Confidence 788999999999844 3568889999999999988888777764 44555554332333434421111010 0
Q ss_pred eeEecCCCCCHHHHHHHHHHHHHcCCeeEEEcCCCCc
Q 007805 456 LEIVRTERTSAQVILDLMTVGKIIKKVPVVVGNCTGF 492 (589)
Q Consensus 456 veiv~~~~t~~e~~~~~~~l~~~lG~~~v~v~d~~Gf 492 (589)
-.+.-+ +.+.++.+.++++..|..+.+.+|..+.
T Consensus 148 g~l~~~---~~~~~~~~~~~l~~~g~~~~~~~di~~~ 181 (341)
T PRK08229 148 GALAIE---ASPALRPFAAAFARAGLPLVTHEDMRAV 181 (341)
T ss_pred CceEec---CCchHHHHHHHHHhcCCCceecchhHHH
Confidence 111212 1245688999999999999988886653
No 183
>PLN02712 arogenate dehydrogenase
Probab=99.21 E-value=2.9e-10 Score=127.42 Aligned_cols=153 Identities=16% Similarity=0.100 Sum_probs=106.9
Q ss_pred ccceEEEEcCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cCC
Q 007805 307 GVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEF 385 (589)
Q Consensus 307 ~~~kI~IIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~ 385 (589)
..++|+|||+|.||+++|..|.+.|++|++||++... +.+ .+.| +...++. +.+
T Consensus 51 ~~~kIgIIG~G~mG~slA~~L~~~G~~V~~~dr~~~~-~~A-----------~~~G-------------v~~~~d~~e~~ 105 (667)
T PLN02712 51 TQLKIAIIGFGNYGQFLAKTLISQGHTVLAHSRSDHS-LAA-----------RSLG-------------VSFFLDPHDLC 105 (667)
T ss_pred CCCEEEEEccCHHHHHHHHHHHHCCCEEEEEeCCHHH-HHH-----------HHcC-------------CEEeCCHHHHh
Confidence 3468999999999999999999999999999998543 221 1111 2223444 323
Q ss_pred -CCCCEEEEeccCChHHHHHHHHHHH-HhCCCCcEEEecCCCC--CHHHHhcccCCCCcEEEecCCCCCCCC-----Cee
Q 007805 386 -KDVDMVIEAVIESVPLKQKIFSELE-KACPPHCILATNTSTI--DLNIVGEKTSSQDRIIGAHFFSPAHVM-----PLL 456 (589)
Q Consensus 386 -~~aDlVIeavpe~~~~k~~v~~~l~-~~~~~~~ii~s~ts~~--~~~~~~~~~~~~~r~ig~h~~~p~~~~-----~lv 456 (589)
.+||+||+|+| +....+++.++. ++++++++|++.+|.- +...+...++....|++.||+..+... ...
T Consensus 106 ~~~aDvViLavP--~~~~~~vl~~l~~~~l~~g~iVvDv~SvK~~~~~~l~~~l~~~~~~v~~HPMaG~e~~~~g~~~~~ 183 (667)
T PLN02712 106 ERHPDVILLCTS--IISTENVLKSLPLQRLKRNTLFVDVLSVKEFAKNLLLDYLPEDFDIICSHPMFGPQSAKHGWDGLR 183 (667)
T ss_pred hcCCCEEEEcCC--HHHHHHHHHhhhhhcCCCCeEEEECCCCcHHHHHHHHHhcCCCCeEEeeCCcCCCccccchhccCc
Confidence 57999999999 566778888886 6788899988776543 234455555444579999997766521 111
Q ss_pred eEec-----CCCCCHHHHHHHHHHHHHcCCeeEEE
Q 007805 457 EIVR-----TERTSAQVILDLMTVGKIIKKVPVVV 486 (589)
Q Consensus 457 eiv~-----~~~t~~e~~~~~~~l~~~lG~~~v~v 486 (589)
.+.. .+....+.++.+.++++.+|.+++.+
T Consensus 184 ~~~~~~~~~~~~~~~~~~~~l~~l~~~lGa~v~~m 218 (667)
T PLN02712 184 FVYEKVRIGNEELRVSRCKSFLEVFEREGCKMVEM 218 (667)
T ss_pred EEEeeccCCCccccHHHHHHHHHHHHHcCCEEEEe
Confidence 2222 22334566788889999999999988
No 184
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=99.18 E-value=4.5e-11 Score=135.57 Aligned_cols=84 Identities=17% Similarity=0.251 Sum_probs=76.9
Q ss_pred CcccccccHHHHHHHHHHHHcCC--CHHHHHHHH-HhcCCCC---cHHHHHHHhchHHHHHHHHHHHHhCCCCCCchHHH
Q 007805 491 GFAVNRAFFPYSQSARLLVSLGV--DVFRIDSAI-RSFGLPI---GPFQLLDLAGYGVAAATSKEFDKAFPDRSFQSPLV 564 (589)
Q Consensus 491 Gfi~nRi~~~~~~Ea~~l~~~Gv--~~~~iD~~~-~~~g~p~---Gpf~~~D~~Gld~~~~~~~~l~~~~~~~~~~~~~l 564 (589)
..|+||++.+++|||++++++|+ +|+|||.++ .++|||+ |||+++|.+|+|+++++++.+. .+++++.|+++|
T Consensus 625 ~~i~nRll~~~~~Ea~~ll~eGvva~~~dID~a~~~g~G~p~~~gGPf~~~D~~Gld~~~~~~~~~~-~~~~~~~p~~~L 703 (715)
T PRK11730 625 EEIIARMMIPMINEVVRCLEEGIVASPAEADMALVYGLGFPPFRGGAFRYLDTLGVANYVALADKYA-HLGPLYQVPEGL 703 (715)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCcCCHHHHHHHHHhCCCCCCCcCCHHHHHHHhCHHHHHHHHHHHH-HcCCCCCCCHHH
Confidence 35899999999999999999994 999999999 8999986 9999999999999999999865 578777799999
Q ss_pred HHHHHcCCCCcccce
Q 007805 565 DLLLKSGRNGNKGFS 579 (589)
Q Consensus 565 ~~~v~~g~~G~~Gfy 579 (589)
++|+++| ++||
T Consensus 704 ~~~v~~~----~~f~ 714 (715)
T PRK11730 704 REMAANG----ESYY 714 (715)
T ss_pred HHHHHcC----CCCC
Confidence 9999998 7786
No 185
>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.
Probab=99.17 E-value=5.4e-11 Score=134.67 Aligned_cols=84 Identities=19% Similarity=0.296 Sum_probs=77.1
Q ss_pred CcccccccHHHHHHHHHHHHcC-C-CHHHHHHHH-HhcCCCC---cHHHHHHHhchHHHHHHHHHHHHhCCCCCCchHHH
Q 007805 491 GFAVNRAFFPYSQSARLLVSLG-V-DVFRIDSAI-RSFGLPI---GPFQLLDLAGYGVAAATSKEFDKAFPDRSFQSPLV 564 (589)
Q Consensus 491 Gfi~nRi~~~~~~Ea~~l~~~G-v-~~~~iD~~~-~~~g~p~---Gpf~~~D~~Gld~~~~~~~~l~~~~~~~~~~~~~l 564 (589)
.-|+||++.+++||+++|+++| + +++|||.++ .|+|||+ |||+++|.+|+|.+.++++.+. .+++++.|+++|
T Consensus 625 ~~i~~Rll~~~~nEa~~ll~eGiva~~~dID~~~~~G~Gfp~~~gGP~~~~D~~Gl~~~~~~~~~~~-~~g~~~~p~~~l 703 (714)
T TIGR02437 625 EEIIARMMIPMINETVRCLEEGIVATAAEADMGLVYGLGFPPFRGGAFRYLDSIGVANFVALADQYA-ELGALYQVTAKL 703 (714)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCcCCHHHHHHHHHhCCCCCCccCCHHHHHHHhCHHHHHHHHHHHH-HhCCCCCCCHHH
Confidence 3489999999999999999999 4 999999999 9999997 9999999999999999999655 788878899999
Q ss_pred HHHHHcCCCCcccce
Q 007805 565 DLLLKSGRNGNKGFS 579 (589)
Q Consensus 565 ~~~v~~g~~G~~Gfy 579 (589)
++|+++| +.||
T Consensus 704 ~~~~~~g----~~f~ 714 (714)
T TIGR02437 704 REMAKNG----QSFY 714 (714)
T ss_pred HHHHHcC----CCCC
Confidence 9999998 6776
No 186
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=99.16 E-value=2.2e-11 Score=112.36 Aligned_cols=105 Identities=23% Similarity=0.234 Sum_probs=77.7
Q ss_pred eEEEEcCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cCCCCC
Q 007805 310 KVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKDV 388 (589)
Q Consensus 310 kI~IIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~a 388 (589)
||+|||+|.||.++|..++++|++|++|+++++.++...+.-. .....+. ......+.+++|+ +++++|
T Consensus 1 KI~ViGaG~~G~AlA~~la~~g~~V~l~~~~~~~~~~i~~~~~--------n~~~~~~--~~l~~~i~~t~dl~~a~~~a 70 (157)
T PF01210_consen 1 KIAVIGAGNWGTALAALLADNGHEVTLWGRDEEQIEEINETRQ--------NPKYLPG--IKLPENIKATTDLEEALEDA 70 (157)
T ss_dssp EEEEESSSHHHHHHHHHHHHCTEEEEEETSCHHHHHHHHHHTS--------ETTTSTT--SBEETTEEEESSHHHHHTT-
T ss_pred CEEEECcCHHHHHHHHHHHHcCCEEEEEeccHHHHHHHHHhCC--------CCCCCCC--cccCcccccccCHHHHhCcc
Confidence 7999999999999999999999999999999987776543211 0000000 0111356778888 678999
Q ss_pred CEEEEeccCChHHHHHHHHHHHHhCCCCcEEEecCCCC
Q 007805 389 DMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTI 426 (589)
Q Consensus 389 DlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~ 426 (589)
|+||.+|| ....+++++++.+++++++++++.+.++
T Consensus 71 d~IiiavP--s~~~~~~~~~l~~~l~~~~~ii~~~KG~ 106 (157)
T PF01210_consen 71 DIIIIAVP--SQAHREVLEQLAPYLKKGQIIISATKGF 106 (157)
T ss_dssp SEEEE-S---GGGHHHHHHHHTTTSHTT-EEEETS-SE
T ss_pred cEEEeccc--HHHHHHHHHHHhhccCCCCEEEEecCCc
Confidence 99999999 5557899999999999999999988887
No 187
>COG2085 Predicted dinucleotide-binding enzymes [General function prediction only]
Probab=99.13 E-value=5.5e-10 Score=104.81 Aligned_cols=154 Identities=18% Similarity=0.163 Sum_probs=105.5
Q ss_pred cceEEEEcCCCCcHHHHHHHHhCCCeEEEEeCC-hHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCccCCC
Q 007805 308 VRKVAVIGGGLMGSGIATAHILNNIYVVLKEVN-SEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFK 386 (589)
Q Consensus 308 ~~kI~IIG~G~mG~~iA~~l~~~G~~V~~~d~~-~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~ 386 (589)
|++++|+|.|+||+++|.+|++.||+|++-.++ +++++.+.+.+ ...++..++.++++
T Consensus 1 m~~~~i~GtGniG~alA~~~a~ag~eV~igs~r~~~~~~a~a~~l---------------------~~~i~~~~~~dA~~ 59 (211)
T COG2085 1 MMIIAIIGTGNIGSALALRLAKAGHEVIIGSSRGPKALAAAAAAL---------------------GPLITGGSNEDAAA 59 (211)
T ss_pred CcEEEEeccChHHHHHHHHHHhCCCeEEEecCCChhHHHHHHHhh---------------------ccccccCChHHHHh
Confidence 578999999999999999999999999999655 44444432211 12355666668899
Q ss_pred CCCEEEEeccCChHHHHHHHHHHHHhCCCCcEEEecCCCCC----------------HH-HHhcccCCCCcEEE-ecC--
Q 007805 387 DVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTID----------------LN-IVGEKTSSQDRIIG-AHF-- 446 (589)
Q Consensus 387 ~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~----------------~~-~~~~~~~~~~r~ig-~h~-- 446 (589)
.||+||.+|| ......+++++.+.+. +.|+++.|-.+. .+ .++..++.. +++. .|-
T Consensus 60 ~aDVVvLAVP--~~a~~~v~~~l~~~~~-~KIvID~tnp~~~~~~~~~~~~~~~~~saae~va~~lp~a-kVVkAFn~i~ 135 (211)
T COG2085 60 LADVVVLAVP--FEAIPDVLAELRDALG-GKIVIDATNPIEVNGEPGDLYLVPSEGSAAEIVAKLLPGA-KVVKAFNTIP 135 (211)
T ss_pred cCCEEEEecc--HHHHHhHHHHHHHHhC-CeEEEecCCCccccCCccccccCCCCCcHHHHHHHHCCCc-chhhhhcccC
Confidence 9999999999 7778899999998876 677776554321 11 223333333 3322 121
Q ss_pred ----CCCCCC-CCeeeEecCCCCCHHHHHHHHHHHHHcCCeeEEEcC
Q 007805 447 ----FSPAHV-MPLLEIVRTERTSAQVILDLMTVGKIIKKVPVVVGN 488 (589)
Q Consensus 447 ----~~p~~~-~~lveiv~~~~t~~e~~~~~~~l~~~lG~~~v~v~d 488 (589)
-+-++. .+..-.+.+ .|.++.+.+.++.+.+|..++-++.
T Consensus 136 a~~l~~~~~~~~~~~v~vag--DD~~Ak~~v~~L~~~iG~~~ld~G~ 180 (211)
T COG2085 136 AAVLADLAKPGGRRDVLVAG--DDAEAKAVVAELAEDIGFRPLDAGP 180 (211)
T ss_pred HHHhccCCCcCCceeEEEec--CcHHHHHHHHHHHHhcCcceeeccc
Confidence 111111 233334444 4788999999999999999998764
No 188
>cd07021 Clp_protease_NfeD_like Nodulation formation efficiency D (NfeD) is a membrane-bound ClpP-class protease. Nodulation formation efficiency D (NfeD; stomatin operon partner protein, STOPP; DUF107) is a member of membrane-anchored ClpP-class proteases. Currently, more than 300 NfeD homologs have been identified - all of which are bacterial or archaeal in origin. Majority of these genomes have been shown to possess operons containing a homologous NfeD/stomatin gene pair, causing NfeD to be previously named STOPP (stomatin operon partner protein). NfeD homologs can be divided into two groups: long and short forms. Long-form homologs have a putative ClpP-class serine protease domain while the short form homologs do not. Downstream from the ClpP-class domain is the so-called NfeD or DUF107 domain. N-terminal region of the NfeD homolog PH1510 (1510-N or PH1510-N) from Pyrococcus horikoshii has been shown to possess serine protease activity and has a Ser-Lys catalytic dyad, preferentiall
Probab=99.10 E-value=9.9e-10 Score=102.75 Aligned_cols=145 Identities=25% Similarity=0.350 Sum_probs=101.2
Q ss_pred EEEEeCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCCcCCCCchhhhhccCCCcccccchhHHHHHHHHHH
Q 007805 16 AIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIE 95 (589)
Q Consensus 16 ~~i~l~~p~~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 95 (589)
.+|.++. .+++...+.+.++|+++.+++ ++.|++.=. |.|+++.. ...++ +.|.
T Consensus 2 ~vi~i~g----~I~~~~~~~l~~~l~~a~~~~-~~~ivl~in----spGG~v~~----------------~~~I~-~~l~ 55 (178)
T cd07021 2 YVIPIEG----EIDPGLAAFVERALKEAKEEG-ADAVVLDID----TPGGRVDS----------------ALEIV-DLIL 55 (178)
T ss_pred EEEEEee----EECHHHHHHHHHHHHHHHhCC-CCeEEEEEE----CcCCCHHH----------------HHHHH-HHHH
Confidence 3455543 367788889999999999876 677777422 12333221 22445 6788
Q ss_pred hCCCcEEEEeCCcccchhhHHhhhcCEEEEeCCceEeccccccCCCCChhh--------hhh------HhhhcC--HHHH
Q 007805 96 DCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGG--------TQR------LPRLVG--LSKA 159 (589)
Q Consensus 96 ~~~kp~iaav~G~a~GgG~~lala~D~~ia~~~a~~~~pe~~~Gl~p~~g~--------~~~------l~~~~G--~~~a 159 (589)
.+++|+|+.|+|.|.++|+.++++||++++++++.|+.+..- +..|+ +.. +.+.-| ...+
T Consensus 56 ~~~~pvva~V~g~AaSaG~~ia~a~d~i~m~p~a~iG~~~~v----~~~~~~~~~~K~~~~~~~~~~~~A~~~gr~~~~a 131 (178)
T cd07021 56 NSPIPTIAYVNDRAASAGALIALAADEIYMAPGATIGAAEPI----PGDGNGAADEKVQSYWRAKMRAAAEKKGRDPDIA 131 (178)
T ss_pred hCCCCEEEEECCchHHHHHHHHHhCCeEEECCCCeEecCeeE----cCCCccchhHHHHHHHHHHHHHHHHHhCCCHHHH
Confidence 999999999999999999999999999999999999988554 32222 011 222223 3444
Q ss_pred HHHHHcC-------------CCCCHHHHHHcCCcceecCc-hHHH
Q 007805 160 IEMMLLS-------------KSITSEEGWKLGLIDAVVTS-EELL 190 (589)
Q Consensus 160 ~~l~ltg-------------~~~~a~~A~~~Glv~~vv~~-~~l~ 190 (589)
..|+-.. -.++++||++.|++|.+.+. ++|+
T Consensus 132 ~~mv~~~~~v~~~~~~~~~~l~lta~eA~~~g~~d~ia~~~~~ll 176 (178)
T cd07021 132 EAMVDKDIEVPGVGIKGGELLTLTADEALKVGYAEGIAGSLDELL 176 (178)
T ss_pred HHHhhhhcccccccccccceeeeCHHHHHHhCCeEEEECCHHHHh
Confidence 4555544 27999999999999999853 4443
No 189
>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins. This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.
Probab=99.08 E-value=4.6e-10 Score=98.54 Aligned_cols=115 Identities=17% Similarity=0.154 Sum_probs=74.3
Q ss_pred cceEEEEcCCCCcHHHHHHHHhCCCeEEEE-eCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCccCCC
Q 007805 308 VRKVAVIGGGLMGSGIATAHILNNIYVVLK-EVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFK 386 (589)
Q Consensus 308 ~~kI~IIG~G~mG~~iA~~l~~~G~~V~~~-d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~ 386 (589)
-.||+|||+|.+|..++..|.++||+|..+ .++++..+++...+ ......+..+.++
T Consensus 10 ~l~I~iIGaGrVG~~La~aL~~ag~~v~~v~srs~~sa~~a~~~~----------------------~~~~~~~~~~~~~ 67 (127)
T PF10727_consen 10 RLKIGIIGAGRVGTALARALARAGHEVVGVYSRSPASAERAAAFI----------------------GAGAILDLEEILR 67 (127)
T ss_dssp --EEEEECTSCCCCHHHHHHHHTTSEEEEESSCHH-HHHHHHC------------------------TT-----TTGGGC
T ss_pred ccEEEEECCCHHHHHHHHHHHHCCCeEEEEEeCCccccccccccc----------------------ccccccccccccc
Confidence 468999999999999999999999998754 78877766653211 1122222226689
Q ss_pred CCCEEEEeccCChHHHHHHHHHHHHh--CCCCcEEEecCCCCCHHHHhcccCCCCcEEEecC
Q 007805 387 DVDMVIEAVIESVPLKQKIFSELEKA--CPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHF 446 (589)
Q Consensus 387 ~aDlVIeavpe~~~~k~~v~~~l~~~--~~~~~ii~s~ts~~~~~~~~~~~~~~~r~ig~h~ 446 (589)
++|+||++||++. ..++.++|... ..++++++-.+...+.+-+............+||
T Consensus 68 ~aDlv~iavpDda--I~~va~~La~~~~~~~g~iVvHtSGa~~~~vL~p~~~~Ga~~~s~HP 127 (127)
T PF10727_consen 68 DADLVFIAVPDDA--IAEVAEQLAQYGAWRPGQIVVHTSGALGSDVLAPARERGAIVASLHP 127 (127)
T ss_dssp C-SEEEE-S-CCH--HHHHHHHHHCC--S-TT-EEEES-SS--GGGGHHHHHTT-EEEEEEE
T ss_pred cCCEEEEEechHH--HHHHHHHHHHhccCCCCcEEEECCCCChHHhhhhHHHCCCeEEEeCc
Confidence 9999999999875 77888999887 7889988766666666666555445556667775
No 190
>PRK12439 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=99.07 E-value=9.5e-10 Score=114.51 Aligned_cols=179 Identities=15% Similarity=0.081 Sum_probs=115.8
Q ss_pred ccceEEEEcCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cCC
Q 007805 307 GVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEF 385 (589)
Q Consensus 307 ~~~kI~IIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~ 385 (589)
.++||+|||+|.||+++|..|+++| +|++|.++++..+...+.-.+ ......+. .....+..++|+ +++
T Consensus 6 ~~mkI~IiGaGa~G~alA~~La~~g-~v~l~~~~~~~~~~i~~~~~~--~~~l~~~~-------~l~~~i~~t~d~~~a~ 75 (341)
T PRK12439 6 REPKVVVLGGGSWGTTVASICARRG-PTLQWVRSAETADDINDNHRN--SRYLGNDV-------VLSDTLRATTDFAEAA 75 (341)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHCC-CEEEEeCCHHHHHHHHhcCCC--cccCCCCc-------ccCCCeEEECCHHHHH
Confidence 4578999999999999999999999 799999999887665331100 00000010 011235567777 568
Q ss_pred CCCCEEEEeccCChHHHHHHHHHHHHhCCCCcEEEecCCCCCH-------HHHhcccCCCCcEEEecCCCCCCC--CCee
Q 007805 386 KDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDL-------NIVGEKTSSQDRIIGAHFFSPAHV--MPLL 456 (589)
Q Consensus 386 ~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~-------~~~~~~~~~~~r~ig~h~~~p~~~--~~lv 456 (589)
+++|+||.||| .....++++++.++++++++++|.+.++.. +.+.+.++.....+-..|..+... ....
T Consensus 76 ~~aDlVilavp--s~~~~~vl~~i~~~l~~~~~vIsl~kGi~~~t~~~~se~i~~~l~~~~~~~l~GP~~a~ev~~g~~t 153 (341)
T PRK12439 76 NCADVVVMGVP--SHGFRGVLTELAKELRPWVPVVSLVKGLEQGTNMRMSQIIEEVLPGHPAGILAGPNIAREVAEGYAA 153 (341)
T ss_pred hcCCEEEEEeC--HHHHHHHHHHHHhhcCCCCEEEEEEeCCcCCCCCcHHHHHHHHcCCCCeEEEECCCHHHHHHcCCCe
Confidence 99999999999 666889999999999999888887777764 234444432111222223211110 1111
Q ss_pred eEecCCCCCHHHHHHHHHHHHHcCCeeEEEcCCCCccccccc
Q 007805 457 EIVRTERTSAQVILDLMTVGKIIKKVPVVVGNCTGFAVNRAF 498 (589)
Q Consensus 457 eiv~~~~t~~e~~~~~~~l~~~lG~~~v~v~d~~Gfi~nRi~ 498 (589)
.++-+. .+++..+.+.+++..-+.++....|..|...--.+
T Consensus 154 ~~via~-~~~~~~~~v~~lf~~~~~~v~~s~Di~gve~~~al 194 (341)
T PRK12439 154 AAVLAM-PDQHLATRLSPLFRTRRFRVYTTDDVVGVEMAGAL 194 (341)
T ss_pred EEEEEe-CCHHHHHHHHHHhCCCCEEEEEcCchHHHHHHHHH
Confidence 122221 26778899999999988888888888875443333
No 191
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=99.05 E-value=5.2e-10 Score=105.68 Aligned_cols=107 Identities=21% Similarity=0.261 Sum_probs=72.6
Q ss_pred ceEEEEcCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCC--H----HHHHHH--hhcccccC
Q 007805 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLT--Q----DKANNA--LKMLKGVL 380 (589)
Q Consensus 309 ~kI~IIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~--~----~~~~~~--~~~i~~~~ 380 (589)
+||+|||+|.+|..+|..|+++||+|+++|+|+++++... .|... + +-.... .+++.+++
T Consensus 1 M~I~ViGlGyvGl~~A~~lA~~G~~V~g~D~~~~~v~~l~------------~g~~p~~E~~l~~ll~~~~~~~~l~~t~ 68 (185)
T PF03721_consen 1 MKIAVIGLGYVGLPLAAALAEKGHQVIGVDIDEEKVEALN------------NGELPIYEPGLDELLKENVSAGRLRATT 68 (185)
T ss_dssp -EEEEE--STTHHHHHHHHHHTTSEEEEE-S-HHHHHHHH------------TTSSSS-CTTHHHHHHHHHHTTSEEEES
T ss_pred CEEEEECCCcchHHHHHHHHhCCCEEEEEeCChHHHHHHh------------hccccccccchhhhhccccccccchhhh
Confidence 5899999999999999999999999999999999888743 22211 1 111111 25778888
Q ss_pred Cc-cCCCCCCEEEEeccC--------ChHHHHHHHHHHHHhCCCCcEEEecCCCCCH
Q 007805 381 DY-SEFKDVDMVIEAVIE--------SVPLKQKIFSELEKACPPHCILATNTSTIDL 428 (589)
Q Consensus 381 ~~-~~~~~aDlVIeavpe--------~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~ 428 (589)
+. +++++||++|+|||. |.....+..++|.++++++.+|+- -|++++
T Consensus 69 ~~~~ai~~adv~~I~VpTP~~~~~~~Dls~v~~a~~~i~~~l~~~~lvV~-~STvpp 124 (185)
T PF03721_consen 69 DIEEAIKDADVVFICVPTPSDEDGSPDLSYVESAIESIAPVLRPGDLVVI-ESTVPP 124 (185)
T ss_dssp EHHHHHHH-SEEEE----EBETTTSBETHHHHHHHHHHHHHHCSCEEEEE-SSSSST
T ss_pred hhhhhhhccceEEEecCCCccccCCccHHHHHHHHHHHHHHHhhcceEEE-ccEEEE
Confidence 88 558999999999986 455677888999999999887753 444443
No 192
>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain. It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....
Probab=99.05 E-value=2.2e-10 Score=96.38 Aligned_cols=89 Identities=20% Similarity=0.236 Sum_probs=69.3
Q ss_pred eEEEEcCCCCcHHHHHHHHhCC---CeEEEE-eCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhccccc--CCcc
Q 007805 310 KVAVIGGGLMGSGIATAHILNN---IYVVLK-EVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGV--LDYS 383 (589)
Q Consensus 310 kI~IIG~G~mG~~iA~~l~~~G---~~V~~~-d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~--~~~~ 383 (589)
||+|||+|.||.+|+..|.++| ++|.++ +++++++++..++. . .... +..+
T Consensus 1 kI~iIG~G~mg~al~~~l~~~g~~~~~v~~~~~r~~~~~~~~~~~~----------------------~-~~~~~~~~~~ 57 (96)
T PF03807_consen 1 KIGIIGAGNMGSALARGLLASGIKPHEVIIVSSRSPEKAAELAKEY----------------------G-VQATADDNEE 57 (96)
T ss_dssp EEEEESTSHHHHHHHHHHHHTTS-GGEEEEEEESSHHHHHHHHHHC----------------------T-TEEESEEHHH
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCceeEEeeccCcHHHHHHHHHhh----------------------c-cccccCChHH
Confidence 7999999999999999999999 899955 99999988753311 1 2222 2337
Q ss_pred CCCCCCEEEEeccCChHHHHHHHHHHHHhCCCCcEEEecCC
Q 007805 384 EFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTS 424 (589)
Q Consensus 384 ~~~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts 424 (589)
.++++|+||.||| +....+++.++ +...++.+++|.+.
T Consensus 58 ~~~~advvilav~--p~~~~~v~~~i-~~~~~~~~vis~~a 95 (96)
T PF03807_consen 58 AAQEADVVILAVK--PQQLPEVLSEI-PHLLKGKLVISIAA 95 (96)
T ss_dssp HHHHTSEEEE-S---GGGHHHHHHHH-HHHHTTSEEEEEST
T ss_pred hhccCCEEEEEEC--HHHHHHHHHHH-hhccCCCEEEEeCC
Confidence 7889999999998 66788999999 77778888888764
No 193
>PRK09287 6-phosphogluconate dehydrogenase; Validated
Probab=99.04 E-value=2.3e-09 Score=114.83 Aligned_cols=180 Identities=13% Similarity=0.066 Sum_probs=119.0
Q ss_pred CcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cCC---CCCCEEEEe
Q 007805 319 MGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEF---KDVDMVIEA 394 (589)
Q Consensus 319 mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~---~~aDlVIea 394 (589)
||.+||.+|+++||+|++|||++++.+...+. .|. . ..+....++ +.+ +.+|+||.+
T Consensus 1 MG~~mA~nL~~~G~~V~v~nrt~~~~~~l~~~----------~g~-~--------~g~~~~~s~~e~v~~l~~~~~Ii~m 61 (459)
T PRK09287 1 MGKNLALNIASHGYTVAVYNRTPEKTDEFLAE----------EGK-G--------KKIVPAYTLEEFVASLEKPRKILLM 61 (459)
T ss_pred CcHHHHHHHHhCCCeEEEECCCHHHHHHHHHh----------hCC-C--------CCeEeeCCHHHHHhhCCCCCEEEEE
Confidence 99999999999999999999999988775321 010 0 113344455 333 358999999
Q ss_pred ccCChHHHHHHHHHHHHhCCCCcEEEecCCCCCHHHH--hcccC-CCCcEEEecCCCCC---CCCCeeeEecCCCCCHHH
Q 007805 395 VIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIV--GEKTS-SQDRIIGAHFFSPA---HVMPLLEIVRTERTSAQV 468 (589)
Q Consensus 395 vpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~~~--~~~~~-~~~r~ig~h~~~p~---~~~~lveiv~~~~t~~e~ 468 (589)
||....+ .+++.++.+.+.++.||++.+++.+.+.. ...+. ...+|+++.-...+ ..++ .-++.| ++++
T Consensus 62 v~~g~~v-~~Vi~~l~~~l~~GdiiID~gn~~~~~t~~~~~~l~~~Gi~fvdapVSGG~~gA~~G~-siM~GG---~~~a 136 (459)
T PRK09287 62 VKAGAPV-DAVIEQLLPLLEKGDIIIDGGNSNYKDTIRREKELAEKGIHFIGMGVSGGEEGALHGP-SIMPGG---QKEA 136 (459)
T ss_pred CCCchHH-HHHHHHHHhcCCCCCEEEECCCCCHHHHHHHHHHHHhcCCeEEecCCCCCHHHHhcCC-EEEEeC---CHHH
Confidence 9977655 45568899999999988876655444322 22222 22234443322211 2233 223444 7999
Q ss_pred HHHHHHHHHHcCCee-------EEEcCC-CCc----ccccccHHH---HHHHHHHHHc--CCCHHHHHHHH
Q 007805 469 ILDLMTVGKIIKKVP-------VVVGNC-TGF----AVNRAFFPY---SQSARLLVSL--GVDVFRIDSAI 522 (589)
Q Consensus 469 ~~~~~~l~~~lG~~~-------v~v~d~-~Gf----i~nRi~~~~---~~Ea~~l~~~--Gv~~~~iD~~~ 522 (589)
++.++++++.++.++ .++++. .|. +-|-|.+.+ +.|++.++++ |++++++-.++
T Consensus 137 ~~~~~piL~~ia~~~~~g~~c~~~vG~~GaGh~vKmvhN~ie~~~mq~iaEa~~l~~~~~Gl~~~~l~~v~ 207 (459)
T PRK09287 137 YELVAPILEKIAAKVEDGEPCVTYIGPDGAGHYVKMVHNGIEYGDMQLIAEAYDLLKDGLGLSAEEIADVF 207 (459)
T ss_pred HHHHHHHHHHHhhhhcCCCCceeeeCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHH
Confidence 999999999999886 778753 232 335565443 4599999983 89999887776
No 194
>PTZ00082 L-lactate dehydrogenase; Provisional
Probab=99.04 E-value=4.6e-10 Score=115.33 Aligned_cols=125 Identities=20% Similarity=0.324 Sum_probs=92.1
Q ss_pred ceEEEEcCCCCcHHHHHHHHhCCC-eEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCccCCCC
Q 007805 309 RKVAVIGGGLMGSGIATAHILNNI-YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKD 387 (589)
Q Consensus 309 ~kI~IIG~G~mG~~iA~~l~~~G~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~ 387 (589)
+||+|||+|.||.++|..++..|+ +|+++|++++.++. . . ++..... .......++..++|++++++
T Consensus 7 ~KI~IIGaG~vG~~ia~~la~~gl~~i~LvDi~~~~~~~-~-~----ld~~~~~------~~~~~~~~I~~~~d~~~l~~ 74 (321)
T PTZ00082 7 RKISLIGSGNIGGVMAYLIVLKNLGDVVLFDIVKNIPQG-K-A----LDISHSN------VIAGSNSKVIGTNNYEDIAG 74 (321)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCCCchhhH-H-H----HHHHhhh------hccCCCeEEEECCCHHHhCC
Confidence 689999999999999999999996 99999999987532 1 0 1100100 00111135666788889999
Q ss_pred CCEEEEec-------------------cCChHHHHHHHHHHHHhCCCC-cEEEecCCCCCHHHHhcccCCC-CcEEEec
Q 007805 388 VDMVIEAV-------------------IESVPLKQKIFSELEKACPPH-CILATNTSTIDLNIVGEKTSSQ-DRIIGAH 445 (589)
Q Consensus 388 aDlVIeav-------------------pe~~~~k~~v~~~l~~~~~~~-~ii~s~ts~~~~~~~~~~~~~~-~r~ig~h 445 (589)
||+||++. +++..+++++.+++.+++++. .|++||.+.+....+....+.| .|++|++
T Consensus 75 aDiVI~tag~~~~~~~~~~~~~r~~~l~~n~~i~~~i~~~i~~~~p~a~~iv~sNP~di~t~~~~~~sg~p~~rviGlg 153 (321)
T PTZ00082 75 SDVVIVTAGLTKRPGKSDKEWNRDDLLPLNAKIMDEVAEGIKKYCPNAFVIVITNPLDVMVKLLQEHSGLPKNKVCGMA 153 (321)
T ss_pred CCEEEECCCCCCCCCCCcCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcHHHHHHHHHHhcCCChhhEEEec
Confidence 99999955 667888999999999999764 4556888877777776666654 7888876
No 195
>cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins. Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas
Probab=99.03 E-value=4.5e-10 Score=114.94 Aligned_cols=121 Identities=19% Similarity=0.323 Sum_probs=86.8
Q ss_pred EEEEcCCCCcHHHHHHHHhCCC-eEEEEeCChHHHHHHHHH-HHHHHHhhHhcCCCCHHHHHHHhhcccccCCccCCCCC
Q 007805 311 VAVIGGGLMGSGIATAHILNNI-YVVLKEVNSEYLLKGIKT-IEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKDV 388 (589)
Q Consensus 311 I~IIG~G~mG~~iA~~l~~~G~-~V~~~d~~~~~~~~~~~~-~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~a 388 (589)
|+|||+|.||.++|..++..|+ +|+++|++++.+ ++... +.. ... ......+++.++|++++++|
T Consensus 1 I~IIGaG~vG~~ia~~la~~~l~eV~L~Di~e~~~-~g~~~dl~~----~~~--------~~~~~~~I~~t~d~~~l~dA 67 (300)
T cd01339 1 ISIIGAGNVGATLAQLLALKELGDVVLLDIVEGLP-QGKALDISQ----AAP--------ILGSDTKVTGTNDYEDIAGS 67 (300)
T ss_pred CEEECCCHHHHHHHHHHHhCCCcEEEEEeCCCcHH-HHHHHHHHH----hhh--------hcCCCeEEEEcCCHHHhCCC
Confidence 6899999999999999998887 999999998754 32221 111 000 11111356666778889999
Q ss_pred CEEEEec--------------cCChHHHHHHHHHHHHhCCCCcE-EEecCCCCCHHHHhcccCC-CCcEEEe
Q 007805 389 DMVIEAV--------------IESVPLKQKIFSELEKACPPHCI-LATNTSTIDLNIVGEKTSS-QDRIIGA 444 (589)
Q Consensus 389 DlVIeav--------------pe~~~~k~~v~~~l~~~~~~~~i-i~s~ts~~~~~~~~~~~~~-~~r~ig~ 444 (589)
|+||+++ +++..+++++++++.+++++..+ ++||.+.+....+...... +.|++|+
T Consensus 68 DiVIit~g~p~~~~~~r~e~~~~n~~i~~~i~~~i~~~~p~~~iIv~sNP~di~t~~~~~~s~~~~~rviGl 139 (300)
T cd01339 68 DVVVITAGIPRKPGMSRDDLLGTNAKIVKEVAENIKKYAPNAIVIVVTNPLDVMTYVAYKASGFPRNRVIGM 139 (300)
T ss_pred CEEEEecCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcHHHHHHHHHHHhCCCHHHEEEe
Confidence 9999966 67889999999999999977764 4577776666555555443 4567663
No 196
>TIGR01724 hmd_rel H2-forming N(5),N(10)-methenyltetrahydromethanopterin dehydrogenase-related protein. This model represents a sister clade to the authenticated coenzyme F420-dependent N(5),N(10)-methenyltetrahydromethanopterin reductase (HMD) of TIGR01723. Two members, designated HmdII and HmdIII, are found. Members are restricted to methanogens, but the function is unknown.
Probab=99.01 E-value=1.9e-08 Score=100.20 Aligned_cols=152 Identities=18% Similarity=0.131 Sum_probs=97.2
Q ss_pred CcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cCCCCCCEEEEeccC
Q 007805 319 MGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKDVDMVIEAVIE 397 (589)
Q Consensus 319 mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~aDlVIeavpe 397 (589)
=|.+||.+|+++||+|++||+++++.+.... ..+.+.| ...+++. +++++||+||.|+|+
T Consensus 31 gGspMArnLlkAGheV~V~Drnrsa~e~e~~------e~LaeaG-------------A~~AaS~aEAAa~ADVVIL~LPd 91 (341)
T TIGR01724 31 GGSRMAIEFAMAGHDVVLAEPNREFMSDDLW------KKVEDAG-------------VKVVSDDKEAAKHGEIHVLFTPF 91 (341)
T ss_pred CHHHHHHHHHHCCCEEEEEeCChhhhhhhhh------HHHHHCC-------------CeecCCHHHHHhCCCEEEEecCC
Confidence 3889999999999999999999876543100 1112223 2334444 778999999999995
Q ss_pred ChHHHHHHHHHHHHhCCCCcEEEecCCCCCHHHHhcc----cCCCC---cEEEecCCCCCC-CCCeeeEecC------CC
Q 007805 398 SVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEK----TSSQD---RIIGAHFFSPAH-VMPLLEIVRT------ER 463 (589)
Q Consensus 398 ~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~~~~~~----~~~~~---r~ig~h~~~p~~-~~~lveiv~~------~~ 463 (589)
...+ .+++..+.+.++++++|++ +||+++..+... +.... .+..+||-.-|- -..-.-++.+ .-
T Consensus 92 ~aaV-~eVl~GLaa~L~~GaIVID-~STIsP~t~~~~~e~~l~~~r~d~~v~s~HP~~vP~~~~~~~~~~~~~~~~~~~~ 169 (341)
T TIGR01724 92 GKGT-FSIARTIIEHVPENAVICN-TCTVSPVVLYYSLEKILRLKRTDVGISSMHPAAVPGTPQHGHYVIGGKPTAGKEM 169 (341)
T ss_pred HHHH-HHHHHHHHhcCCCCCEEEE-CCCCCHHHHHHHHHHHhhcCccccCeeccCCCCCCCCCCCceeeecccccccccc
Confidence 5544 4556778899999998865 455555543332 22222 344455532221 1111113322 23
Q ss_pred CCHHHHHHHHHHHHHcCCeeEEE-cCCCC
Q 007805 464 TSAQVILDLMTVGKIIKKVPVVV-GNCTG 491 (589)
Q Consensus 464 t~~e~~~~~~~l~~~lG~~~v~v-~d~~G 491 (589)
.++|.++++.++.+..|+.++++ .+..+
T Consensus 170 A~ee~i~~~~el~~~~~~~~~~~pa~l~~ 198 (341)
T TIGR01724 170 ATEEQISKCVELAKSTGKKAYVVPADVTS 198 (341)
T ss_pred CCHHHHHHHHHHHHHhCCCeeecchhhcc
Confidence 48999999999999999999998 34333
No 197
>TIGR03376 glycerol3P_DH glycerol-3-phosphate dehydrogenase (NAD(+)). Members of this protein family are the eukaryotic enzyme, glycerol-3-phosphate dehydrogenase (NAD(+)) (EC 1.1.1.8). Enzymatic activity for 1.1.1.8 is defined as sn-glycerol 3-phosphate + NAD(+) = glycerone phosphate + NADH. Note the very similar reactions of enzymes defined as EC 1.1.1.94 and 1.1.99.5, assigned to families of proteins in the bacteria.
Probab=99.00 E-value=1e-09 Score=113.30 Aligned_cols=170 Identities=15% Similarity=0.035 Sum_probs=104.7
Q ss_pred eEEEEcCCCCcHHHHHHHHhCC--------CeEEEEeC-----ChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcc
Q 007805 310 KVAVIGGGLMGSGIATAHILNN--------IYVVLKEV-----NSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKML 376 (589)
Q Consensus 310 kI~IIG~G~mG~~iA~~l~~~G--------~~V~~~d~-----~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i 376 (589)
||+|||+|.||+++|..++.+| ++|++|.+ +++..+...+. .+..+..+. -.....+
T Consensus 1 kI~VIGaG~wGtALA~~la~ng~~~~~~~~~~V~lw~~~~~~~~~~~~~~in~~--------~~n~~ylpg--i~Lp~~i 70 (342)
T TIGR03376 1 RVAVVGSGNWGTAIAKIVAENARALPELFEESVRMWVFEEEIEGRNLTEIINTT--------HENVKYLPG--IKLPANL 70 (342)
T ss_pred CEEEECcCHHHHHHHHHHHHcCCcccccCCceEEEEEeccccCCHHHHHHHHhc--------CCCccccCC--CcCCCCe
Confidence 6999999999999999999999 99999998 43333322111 110000000 0012456
Q ss_pred cccCCc-cCCCCCCEEEEeccCChHHHHHHHHHHHHhCCCCcEEEecCCCCCHH--H-------HhcccCCCCcEEEecC
Q 007805 377 KGVLDY-SEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLN--I-------VGEKTSSQDRIIGAHF 446 (589)
Q Consensus 377 ~~~~~~-~~~~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~--~-------~~~~~~~~~r~ig~h~ 446 (589)
++++|+ +++++||+||.||| ....+.+++++.++++++.+++|.++++..+ . +.+.+..+--++. -|
T Consensus 71 ~at~dl~eal~~ADiIIlAVP--s~~i~~vl~~l~~~l~~~~~iVs~tKGie~~~~~~~~~se~i~e~l~~~~~~ls-GP 147 (342)
T TIGR03376 71 VAVPDLVEAAKGADILVFVIP--HQFLEGICKQLKGHVKPNARAISCIKGLEVSKDGVKLLSDIIEEELGIPCGVLS-GA 147 (342)
T ss_pred EEECCHHHHHhcCCEEEEECC--hHHHHHHHHHHHhhcCCCCEEEEEeCCcccCCCcCccHHHHHHHHhCCCeEEee-Cc
Confidence 778888 67899999999999 6668899999999999999899988887654 1 1122211110011 11
Q ss_pred CCCC--CCC-CeeeEecCCCCC--HHHHHHHHHHHHHcCCeeEEEcCCCCc
Q 007805 447 FSPA--HVM-PLLEIVRTERTS--AQVILDLMTVGKIIKKVPVVVGNCTGF 492 (589)
Q Consensus 447 ~~p~--~~~-~lveiv~~~~t~--~e~~~~~~~l~~~lG~~~v~v~d~~Gf 492 (589)
..+. ... +...++.+...+ .+..+.+++++..=-.+++...|..|-
T Consensus 148 ~~A~Eva~~~pt~~~ia~~~~~~~~~~a~~~~~lf~~~~frv~~s~Dv~Gv 198 (342)
T TIGR03376 148 NLANEVAKEKFSETTVGYRDPADFDVDARVLKALFHRPYFRVNVVDDVAGV 198 (342)
T ss_pred chHHHHHcCCCceEEEEeCCCcchHHHHHHHHHHhCCCCEEEEEcCCcccc
Confidence 1000 011 111122222111 788888888888666666666777653
No 198
>PRK06223 malate dehydrogenase; Reviewed
Probab=98.98 E-value=1.3e-09 Score=112.14 Aligned_cols=125 Identities=18% Similarity=0.274 Sum_probs=82.4
Q ss_pred cceEEEEcCCCCcHHHHHHHHhCCC-eEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCccCCC
Q 007805 308 VRKVAVIGGGLMGSGIATAHILNNI-YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFK 386 (589)
Q Consensus 308 ~~kI~IIG~G~mG~~iA~~l~~~G~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~ 386 (589)
|+||+|||+|.||.++|..++..|+ +|+++|++++.++.....+.... .. .....+++.++++++++
T Consensus 2 ~~KI~VIGaG~vG~~ia~~la~~~~~ev~L~D~~~~~~~~~~~dl~~~~---~~---------~~~~~~i~~~~d~~~~~ 69 (307)
T PRK06223 2 RKKISIIGAGNVGATLAHLLALKELGDVVLFDIVEGVPQGKALDIAEAA---PV---------EGFDTKITGTNDYEDIA 69 (307)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCeEEEEEECCCchhHHHHHHHHhhh---hh---------cCCCcEEEeCCCHHHHC
Confidence 5799999999999999999999876 99999999887543211111110 00 00113566667788899
Q ss_pred CCCEEEEec--------------cCChHHHHHHHHHHHHhCCCCcE-EEecCCCCCHHHHhcccCC-CCcEEEe
Q 007805 387 DVDMVIEAV--------------IESVPLKQKIFSELEKACPPHCI-LATNTSTIDLNIVGEKTSS-QDRIIGA 444 (589)
Q Consensus 387 ~aDlVIeav--------------pe~~~~k~~v~~~l~~~~~~~~i-i~s~ts~~~~~~~~~~~~~-~~r~ig~ 444 (589)
+||+||+++ .++..+++++++++.+++++..+ ++||.+.+....+...... +.|++|+
T Consensus 70 ~aDiVii~~~~p~~~~~~r~~~~~~n~~i~~~i~~~i~~~~~~~~viv~tNP~d~~~~~~~~~s~~~~~~viG~ 143 (307)
T PRK06223 70 GSDVVVITAGVPRKPGMSRDDLLGINAKIMKDVAEGIKKYAPDAIVIVVTNPVDAMTYVALKESGFPKNRVIGM 143 (307)
T ss_pred CCCEEEECCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcHHHHHHHHHHHhCCCcccEEEe
Confidence 999999986 35668899999999999866533 3455544333333222222 2455553
No 199
>PTZ00117 malate dehydrogenase; Provisional
Probab=98.98 E-value=1.3e-09 Score=112.20 Aligned_cols=124 Identities=24% Similarity=0.337 Sum_probs=90.4
Q ss_pred ceEEEEcCCCCcHHHHHHHHhCC-CeEEEEeCChHHHHHHHH-HHHHHHHhhHhcCCCCHHHHHHHhhcccccCCccCCC
Q 007805 309 RKVAVIGGGLMGSGIATAHILNN-IYVVLKEVNSEYLLKGIK-TIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFK 386 (589)
Q Consensus 309 ~kI~IIG~G~mG~~iA~~l~~~G-~~V~~~d~~~~~~~~~~~-~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~ 386 (589)
+||+|||+|.||.++|..++..| .+|+++|++++.++ +.. .+... .. ......+++.++++++++
T Consensus 6 ~KI~IIGaG~vG~~ia~~l~~~~~~~l~L~Di~~~~~~-g~~lDl~~~----~~--------~~~~~~~i~~~~d~~~l~ 72 (319)
T PTZ00117 6 KKISMIGAGQIGSTVALLILQKNLGDVVLYDVIKGVPQ-GKALDLKHF----ST--------LVGSNINILGTNNYEDIK 72 (319)
T ss_pred cEEEEECCCHHHHHHHHHHHHCCCCeEEEEECCCccch-hHHHHHhhh----cc--------ccCCCeEEEeCCCHHHhC
Confidence 48999999999999999999988 69999999987754 221 01100 00 000112455567888999
Q ss_pred CCCEEEEec--cCCh------------HHHHHHHHHHHHhCCCC-cEEEecCCCCCHHHHhcccCCC-CcEEEec
Q 007805 387 DVDMVIEAV--IESV------------PLKQKIFSELEKACPPH-CILATNTSTIDLNIVGEKTSSQ-DRIIGAH 445 (589)
Q Consensus 387 ~aDlVIeav--pe~~------------~~k~~v~~~l~~~~~~~-~ii~s~ts~~~~~~~~~~~~~~-~r~ig~h 445 (589)
+||+||+++ |+++ .+++++.+++.+++++. .|++||.+.+....+......| .|++|++
T Consensus 73 ~ADiVVitag~~~~~g~~r~dll~~n~~i~~~i~~~i~~~~p~a~vivvsNP~di~t~~~~~~s~~p~~rviG~g 147 (319)
T PTZ00117 73 DSDVVVITAGVQRKEEMTREDLLTINGKIMKSVAESVKKYCPNAFVICVTNPLDCMVKVFQEKSGIPSNKICGMA 147 (319)
T ss_pred CCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecChHHHHHHHHHHhhCCCcccEEEec
Confidence 999999999 7777 88999999999998776 4556887766666665555554 6888866
No 200
>PTZ00345 glycerol-3-phosphate dehydrogenase; Provisional
Probab=98.96 E-value=2.8e-09 Score=110.83 Aligned_cols=169 Identities=16% Similarity=0.016 Sum_probs=106.2
Q ss_pred ceEEEEcCCCCcHHHHHHHHhCC-------CeEEEEeCChHH-----HHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcc
Q 007805 309 RKVAVIGGGLMGSGIATAHILNN-------IYVVLKEVNSEY-----LLKGIKTIEANVRGLVTRGKLTQDKANNALKML 376 (589)
Q Consensus 309 ~kI~IIG~G~mG~~iA~~l~~~G-------~~V~~~d~~~~~-----~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i 376 (589)
+||+|||+|.||+++|..++++| ++|.+|.++++. .+...+..++. +++..-. ....+
T Consensus 12 ~ki~ViGaG~wGtAlA~~l~~n~~~~~~~~~~V~lw~~~~~~~~~~~~~~in~~~~N~--~ylp~~~--------Lp~ni 81 (365)
T PTZ00345 12 LKVSVIGSGNWGSAISKVVGENTQRNYIFHNEVRMWVLEEIVEGEKLSDIINTKHENV--KYLPGIK--------LPDNI 81 (365)
T ss_pred CeEEEECCCHHHHHHHHHHHhcCCcccCCCCeEEEEEecccccchHHHHHHHhcCCCc--ccCCCCc--------CCCce
Confidence 67999999999999999999997 899999999862 22221110000 0111001 12567
Q ss_pred cccCCc-cCCCCCCEEEEeccCChHHHHHHHHHHHH--hCCCCcEEEecCCCCCHHH--------H-hcccCCCCcEEEe
Q 007805 377 KGVLDY-SEFKDVDMVIEAVIESVPLKQKIFSELEK--ACPPHCILATNTSTIDLNI--------V-GEKTSSQDRIIGA 444 (589)
Q Consensus 377 ~~~~~~-~~~~~aDlVIeavpe~~~~k~~v~~~l~~--~~~~~~ii~s~ts~~~~~~--------~-~~~~~~~~r~ig~ 444 (589)
.+++|+ +++++||+||.||| +...+++++++.+ +++++++++|.++++..+. + .+.++.+--++.
T Consensus 82 ~~tsdl~eav~~aDiIvlAVP--sq~l~~vl~~l~~~~~l~~~~~iIS~aKGIe~~t~~~~~~sevi~e~l~~~~~~Ls- 158 (365)
T PTZ00345 82 VAVSDLKEAVEDADLLIFVIP--HQFLESVLSQIKENNNLKKHARAISLTKGIIVENGKPVLCSDVIEEELGIPCCALS- 158 (365)
T ss_pred EEecCHHHHHhcCCEEEEEcC--hHHHHHHHHHhccccccCCCCEEEEEeCCcccCCCCcccHHHHHHHHhCCCeEEEE-
Confidence 778887 67899999999999 7778999999998 7888888888877765432 1 122221111111
Q ss_pred cCCCCC---CCCCeeeEecCCCCCHHHHHHHHHHHHHcCCeeEEEcCCCCc
Q 007805 445 HFFSPA---HVMPLLEIVRTERTSAQVILDLMTVGKIIKKVPVVVGNCTGF 492 (589)
Q Consensus 445 h~~~p~---~~~~lveiv~~~~t~~e~~~~~~~l~~~lG~~~v~v~d~~Gf 492 (589)
-|..+. .-.+...++.+ .+++....+++++..=-.+++...|..|.
T Consensus 159 GPs~A~Eva~~~pt~~vias--~~~~~a~~~~~lf~~~~frvy~s~Dv~Gv 207 (365)
T PTZ00345 159 GANVANDVAREEFSEATIGC--EDKDDALIWQRLFDRPYFKINCVPDVIGV 207 (365)
T ss_pred CCCHHHHHHcCCCcEEEEEe--CCHHHHHHHHHHhCCCcEEEEEcCCcccc
Confidence 111100 00111112222 37788888888888766777777777663
No 201
>COG1023 Gnd Predicted 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]
Probab=98.91 E-value=3.9e-08 Score=92.79 Aligned_cols=184 Identities=14% Similarity=0.129 Sum_probs=125.4
Q ss_pred ceEEEEcCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc----cC
Q 007805 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY----SE 384 (589)
Q Consensus 309 ~kI~IIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~----~~ 384 (589)
++|+.||+|.||..|+.+|.+.||+|++||+|++..+.+.. .| ++..+++ +.
T Consensus 1 M~iGmiGLGrMG~n~v~rl~~~ghdvV~yD~n~~av~~~~~-----------~g-------------a~~a~sl~el~~~ 56 (300)
T COG1023 1 MQIGMIGLGRMGANLVRRLLDGGHDVVGYDVNQTAVEELKD-----------EG-------------ATGAASLDELVAK 56 (300)
T ss_pred CcceeeccchhhHHHHHHHHhCCCeEEEEcCCHHHHHHHHh-----------cC-------------CccccCHHHHHHh
Confidence 46999999999999999999999999999999999887532 22 1222222 34
Q ss_pred CCCCCEEEEeccCChHHHHHHHHHHHHhCCCCcEEEecCCCCCHHHHhcccCCCCcEEEecCCCCCCCC-------Ceee
Q 007805 385 FKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVM-------PLLE 457 (589)
Q Consensus 385 ~~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~~~~~~~~~~~r~ig~h~~~p~~~~-------~lve 457 (589)
+...-.|-..||-- ++..+++.++.+.+.++-+|++...+.--+.+...-...+ .|+||++--..+ ...-
T Consensus 57 L~~pr~vWlMvPag-~it~~vi~~la~~L~~GDivIDGGNS~y~Ds~rr~~~l~~--kgi~flD~GTSGG~~G~~~G~~l 133 (300)
T COG1023 57 LSAPRIVWLMVPAG-DITDAVIDDLAPLLSAGDIVIDGGNSNYKDSLRRAKLLAE--KGIHFLDVGTSGGVWGAERGYCL 133 (300)
T ss_pred cCCCcEEEEEccCC-CchHHHHHHHHhhcCCCCEEEECCccchHHHHHHHHHHHh--cCCeEEeccCCCCchhhhcCceE
Confidence 55667888999832 2577899999999999999887655433333322111112 267775432211 1112
Q ss_pred EecCCCCCHHHHHHHHHHHHHcCC---eeEEEcC-CCCccc----ccccHHH---HHHHHHHHHcC---CCHHHHHHHH
Q 007805 458 IVRTERTSAQVILDLMTVGKIIKK---VPVVVGN-CTGFAV----NRAFFPY---SQSARLLVSLG---VDVFRIDSAI 522 (589)
Q Consensus 458 iv~~~~t~~e~~~~~~~l~~~lG~---~~v~v~d-~~Gfi~----nRi~~~~---~~Ea~~l~~~G---v~~~~iD~~~ 522 (589)
++.| ++++++.+.++++.+.- -..+++. ..|-.+ |-|=+.+ +.|.+.++++. ++.+++-++|
T Consensus 134 MiGG---~~~a~~~~~pif~~lA~ge~Gyl~~Gp~GsGHfvKMVHNGIEYGmM~a~aEGfelL~~s~fD~D~~~VA~vW 209 (300)
T COG1023 134 MIGG---DEEAVERLEPIFKALAPGEDGYLYCGPSGSGHFVKMVHNGIEYGMMQAIAEGFELLKNSPFDYDLEAVAEVW 209 (300)
T ss_pred EecC---cHHHHHHHHHHHHhhCcCcCccccccCCCcchhHHHHhccHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHH
Confidence 4445 89999999999999765 3355643 445443 7775544 45899999885 3888888888
No 202
>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=98.88 E-value=1e-08 Score=106.42 Aligned_cols=174 Identities=16% Similarity=0.103 Sum_probs=104.0
Q ss_pred eEEEEcCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cCC-CC
Q 007805 310 KVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEF-KD 387 (589)
Q Consensus 310 kI~IIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~-~~ 387 (589)
||+|||+|.||+.+|..|+++|++|++|+++++.++...+...+ .. .+.. ......+..+++. +.+ .+
T Consensus 2 kI~IiGaGa~G~ala~~L~~~g~~V~l~~r~~~~~~~i~~~~~~-----~~--~~~~---~~~~~~i~~~~~~~~~~~~~ 71 (326)
T PRK14620 2 KISILGAGSFGTAIAIALSSKKISVNLWGRNHTTFESINTKRKN-----LK--YLPT---CHLPDNISVKSAIDEVLSDN 71 (326)
T ss_pred EEEEECcCHHHHHHHHHHHHCCCeEEEEecCHHHHHHHHHcCCC-----cc--cCCC---CcCCCCeEEeCCHHHHHhCC
Confidence 69999999999999999999999999999998876654321000 00 0000 0001234455565 444 58
Q ss_pred CCEEEEeccCChHHHHHHHHHHHH-hCCCCcEEEecCCCCCH-------HHHhcccCCCCcEEE-ecCCCC---CCCCCe
Q 007805 388 VDMVIEAVIESVPLKQKIFSELEK-ACPPHCILATNTSTIDL-------NIVGEKTSSQDRIIG-AHFFSP---AHVMPL 455 (589)
Q Consensus 388 aDlVIeavpe~~~~k~~v~~~l~~-~~~~~~ii~s~ts~~~~-------~~~~~~~~~~~r~ig-~h~~~p---~~~~~l 455 (589)
+|+||.||| .....++++++.+ ++++++++++.++++.. +.+...++.. ++.. .-|... ....+.
T Consensus 72 ~Dliiiavk--s~~~~~~l~~l~~~~l~~~~~vv~~~nGi~~~~~~~~~~~l~~~~~~~-~~~~~~Gp~~a~~~~~~~~~ 148 (326)
T PRK14620 72 ATCIILAVP--TQQLRTICQQLQDCHLKKNTPILICSKGIEKSSLKFPSEIVNEILPNN-PIAILSGPSFAKEIAEKLPC 148 (326)
T ss_pred CCEEEEEeC--HHHHHHHHHHHHHhcCCCCCEEEEEEcCeeCCCCccHHHHHHHHcCCC-ceEeecCCcHHHHHHcCCCc
Confidence 999999998 5567788999998 88888777766766633 2233333321 2111 111100 000110
Q ss_pred eeEecCCCCCHHHHHHHHHHHHHcCCeeEEEcCCCCccccccc
Q 007805 456 LEIVRTERTSAQVILDLMTVGKIIKKVPVVVGNCTGFAVNRAF 498 (589)
Q Consensus 456 veiv~~~~t~~e~~~~~~~l~~~lG~~~v~v~d~~Gfi~nRi~ 498 (589)
.-.+. ..+.+..+.+.+++..-+..+....|..|...-..+
T Consensus 149 ~~~~~--~~~~~~~~~l~~~l~~~~~~~~~~~Di~g~~~~k~~ 189 (326)
T PRK14620 149 SIVLA--GQNETLGSSLISKLSNENLKIIYSQDIIGVQIGAAL 189 (326)
T ss_pred EEEEe--cCCHHHHHHHHHHHCCCCeEEEecCcchhhhhHHHH
Confidence 01112 235556667777777767777777888776544443
No 203
>PRK06444 prephenate dehydrogenase; Provisional
Probab=98.79 E-value=1e-07 Score=90.59 Aligned_cols=112 Identities=12% Similarity=0.053 Sum_probs=82.7
Q ss_pred eEEEEcC-CCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCccCCCCC
Q 007805 310 KVAVIGG-GLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKDV 388 (589)
Q Consensus 310 kI~IIG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~a 388 (589)
||+|||. |.||.-++..|.++|+.|+ +++|
T Consensus 2 ~~~iiG~~G~mG~~~~~~~~~~g~~v~-------------------------------------------------~~~~ 32 (197)
T PRK06444 2 MEIIIGKNGRLGRVLCSILDDNGLGVY-------------------------------------------------IKKA 32 (197)
T ss_pred EEEEEecCCcHHHHHHHHHHhCCCEEE-------------------------------------------------ECCC
Confidence 7999998 9999999999999999986 1478
Q ss_pred CEEEEeccCChHHHHHHHHHHHHhCCCCcEEEecCCCCCHHHHhcccCCCCcEEEecCCCCCCCC-----CeeeEecCCC
Q 007805 389 DMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVM-----PLLEIVRTER 463 (589)
Q Consensus 389 DlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~~~~~~~~~~~r~ig~h~~~p~~~~-----~lveiv~~~~ 463 (589)
|+||+|+| +....++++++. .+|++.+|.-. .+.+. ..+|+|.||...|... ..+.+ ..+.
T Consensus 33 DlVilavP--v~~~~~~i~~~~------~~v~Dv~SvK~--~i~~~---~~~~vg~HPMfGp~~a~~~lf~~~iv-~~~~ 98 (197)
T PRK06444 33 DHAFLSVP--IDAALNYIESYD------NNFVEISSVKW--PFKKY---SGKIVSIHPLFGPMSYNDGVHRTVIF-INDI 98 (197)
T ss_pred CEEEEeCC--HHHHHHHHHHhC------CeEEeccccCH--HHHHh---cCCEEecCCCCCCCcCcccccceEEE-ECCC
Confidence 99999999 655667776654 25666666433 12221 3479999997665332 22333 4667
Q ss_pred CCHHHHHHHHHHHHHcCCeeEEE
Q 007805 464 TSAQVILDLMTVGKIIKKVPVVV 486 (589)
Q Consensus 464 t~~e~~~~~~~l~~~lG~~~v~v 486 (589)
++++.++.+.++++ |.+++.+
T Consensus 99 ~~~~~~~~~~~l~~--G~~~~~~ 119 (197)
T PRK06444 99 SRDNYLNEINEMFR--GYHFVEM 119 (197)
T ss_pred CCHHHHHHHHHHHc--CCEEEEe
Confidence 88999999999998 8888876
No 204
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=98.78 E-value=2e-07 Score=95.84 Aligned_cols=166 Identities=14% Similarity=0.085 Sum_probs=97.6
Q ss_pred ceEEEEcCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCC-CCHHHHHHHhhcccccCCc-cCCC
Q 007805 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGK-LTQDKANNALKMLKGVLDY-SEFK 386 (589)
Q Consensus 309 ~kI~IIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~-~~~~~~~~~~~~i~~~~~~-~~~~ 386 (589)
+||+|||+|.||+.+|..|+++|++|++|++ ++..+...+ .|. +.....+. .-.....++. +..+
T Consensus 1 mkI~IiG~G~iG~~~a~~L~~~g~~V~~~~r-~~~~~~~~~-----------~g~~~~~~~~~~-~~~~~~~~~~~~~~~ 67 (305)
T PRK12921 1 MRIAVVGAGAVGGTFGGRLLEAGRDVTFLVR-PKRAKALRE-----------RGLVIRSDHGDA-VVPGPVITDPEELTG 67 (305)
T ss_pred CeEEEECCCHHHHHHHHHHHHCCCceEEEec-HHHHHHHHh-----------CCeEEEeCCCeE-EecceeecCHHHccC
Confidence 3799999999999999999999999999999 666655321 110 00000000 0011123444 3458
Q ss_pred CCCEEEEeccCChHHHHHHHHHHHHhCCCCcEEEecCCCCCH-HHHhcccCCCCcEE-EecC-----CCCCCCC---Cee
Q 007805 387 DVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDL-NIVGEKTSSQDRII-GAHF-----FSPAHVM---PLL 456 (589)
Q Consensus 387 ~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~-~~~~~~~~~~~r~i-g~h~-----~~p~~~~---~lv 456 (589)
++|+||.|++.. ...++++++.+.++++++|++...++.. +.+...++. .+++ +..+ ..|-.+. ..-
T Consensus 68 ~~d~vilavk~~--~~~~~~~~l~~~~~~~~~ii~~~nG~~~~~~l~~~~~~-~~v~~g~~~~~~~~~~~g~v~~~~~~~ 144 (305)
T PRK12921 68 PFDLVILAVKAY--QLDAAIPDLKPLVGEDTVIIPLQNGIGQLEQLEPYFGR-ERVLGGVVFISAQLNGDGVVVQRADHR 144 (305)
T ss_pred CCCEEEEEeccc--CHHHHHHHHHhhcCCCCEEEEeeCCCChHHHHHHhCCc-ccEEEEEEEEEEEECCCeEEEEcCCCc
Confidence 999999999843 3567788899888888888776667653 345444432 2333 2222 2221100 000
Q ss_pred eEec-CCCCCHHHHHHHHHHHHHcCCeeEEEcCCC
Q 007805 457 EIVR-TERTSAQVILDLMTVGKIIKKVPVVVGNCT 490 (589)
Q Consensus 457 eiv~-~~~t~~e~~~~~~~l~~~lG~~~v~v~d~~ 490 (589)
..+. .+....+..+.+.+++...|..+....|..
T Consensus 145 ~~iG~~~~~~~~~~~~l~~~l~~~g~~~~~~~di~ 179 (305)
T PRK12921 145 LTFGEIPGQRSERTRAVRDALAGARLEVVLSENIR 179 (305)
T ss_pred EEEcCCCCCcCHHHHHHHHHHHhCCCCceecHHHH
Confidence 0111 122334566677788888887666656643
No 205
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=98.76 E-value=5.9e-08 Score=99.63 Aligned_cols=113 Identities=18% Similarity=0.137 Sum_probs=77.4
Q ss_pred ceEEEEcCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCccCCCCC
Q 007805 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKDV 388 (589)
Q Consensus 309 ~kI~IIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~a 388 (589)
+||+|||+|.||+.+|..|+++|++|++++++++..+...+. . +. +..|.. ...+..+++.+.++++
T Consensus 1 m~I~IiG~G~~G~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~-g--~~--~~~~~~--------~~~~~~~~~~~~~~~~ 67 (304)
T PRK06522 1 MKIAILGAGAIGGLFGAALAQAGHDVTLVARRGAHLDALNEN-G--LR--LEDGEI--------TVPVLAADDPAELGPQ 67 (304)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCeEEEEECChHHHHHHHHc-C--Cc--ccCCce--------eecccCCCChhHcCCC
Confidence 379999999999999999999999999999988776654221 0 00 001110 0112234444445899
Q ss_pred CEEEEeccCChHHHHHHHHHHHHhCCCCcEEEecCCCCCH-HHHhcccC
Q 007805 389 DMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDL-NIVGEKTS 436 (589)
Q Consensus 389 DlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~-~~~~~~~~ 436 (589)
|+||.|++.. ....+++++.+.+.++++|++...++.. +.+...++
T Consensus 68 d~vila~k~~--~~~~~~~~l~~~l~~~~~iv~~~nG~~~~~~l~~~~~ 114 (304)
T PRK06522 68 DLVILAVKAY--QLPAALPSLAPLLGPDTPVLFLQNGVGHLEELAAYIG 114 (304)
T ss_pred CEEEEecccc--cHHHHHHHHhhhcCCCCEEEEecCCCCcHHHHHHhcC
Confidence 9999999843 3578889999999888877777667653 44444443
No 206
>COG0362 Gnd 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]
Probab=98.75 E-value=2.3e-07 Score=93.79 Aligned_cols=190 Identities=13% Similarity=0.098 Sum_probs=129.6
Q ss_pred cceEEEEcCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc----c
Q 007805 308 VRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY----S 383 (589)
Q Consensus 308 ~~kI~IIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~----~ 383 (589)
...||+||+|.||..+|..++++||.|.+|+|++++.+...+.. ..+ ..+..+.++ +
T Consensus 3 ~~~iGviGLaVMG~NLaLNi~~~G~~VavyNRt~~ktd~f~~~~--------~~~-----------k~i~~~~sieefV~ 63 (473)
T COG0362 3 KADIGVIGLAVMGSNLALNIADHGYTVAVYNRTTEKTDEFLAER--------AKG-----------KNIVPAYSIEEFVA 63 (473)
T ss_pred ccceeeEehhhhhHHHHHHHHhcCceEEEEeCCHHHHHHHHHhC--------ccC-----------CCccccCcHHHHHH
Confidence 45799999999999999999999999999999999988754321 111 133444444 3
Q ss_pred CCCCCCEEEEeccCChHHHHHHHHHHHHhCCCCcEEEecCCCCCHHHHh---cccCCCCcEEEecC-------CCCCCCC
Q 007805 384 EFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVG---EKTSSQDRIIGAHF-------FSPAHVM 453 (589)
Q Consensus 384 ~~~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~~~~---~~~~~~~r~ig~h~-------~~p~~~~ 453 (589)
.++.---|++.|--- ....+++++|.+++.++-||++...+.-.+++. +.....-.|+|+-- .+.|.
T Consensus 64 ~Le~PRkI~lMVkAG-~~VD~~I~~L~p~Le~gDIiIDGGNs~y~DT~RR~~eL~~~Gi~FvG~GVSGGEeGA~~GPS-- 140 (473)
T COG0362 64 SLEKPRKILLMVKAG-TPVDAVIEQLLPLLEKGDIIIDGGNSHYKDTIRRNKELSEKGILFVGMGVSGGEEGARHGPS-- 140 (473)
T ss_pred HhcCCceEEEEEecC-CcHHHHHHHHHhhcCCCCEEEeCCCcCCchHHHHHHHHHhcCCeEEeccccccccccccCCC--
Confidence 456667777777432 223578899999999999999765443333322 22234456777664 22333
Q ss_pred CeeeEecCCCCCHHHHHHHHHHHHHcCCe----e--EEE-cCCCCccc----cccc---HHHHHHHHHHHHcC--CCHHH
Q 007805 454 PLLEIVRTERTSAQVILDLMTVGKIIKKV----P--VVV-GNCTGFAV----NRAF---FPYSQSARLLVSLG--VDVFR 517 (589)
Q Consensus 454 ~lveiv~~~~t~~e~~~~~~~l~~~lG~~----~--v~v-~d~~Gfi~----nRi~---~~~~~Ea~~l~~~G--v~~~~ 517 (589)
++|| .++++.+.+.+++..+..+ | .++ .+..|-.+ |-|= +.++.|++.++.+| ++.++
T Consensus 141 ----iMpG--G~~eay~~v~pil~~IaAk~~g~pCc~~iG~~GAGHfVKmVHNGIEYgDMQlIaE~Y~ilk~~lgls~~e 214 (473)
T COG0362 141 ----IMPG--GQKEAYELVAPILTKIAAKVDGEPCCTWIGPDGAGHFVKMVHNGIEYGDMQLIAEAYDILKDGLGLSAEE 214 (473)
T ss_pred ----cCCC--CCHHHHHHHHHHHHHHHhhcCCCCceeeECCCCCCceeeeeecCchHHHHHHHHHHHHHHHHhcCCCHHH
Confidence 4454 4899999999999887542 2 233 56677655 6664 34678999999885 59999
Q ss_pred HHHHHHhc
Q 007805 518 IDSAIRSF 525 (589)
Q Consensus 518 iD~~~~~~ 525 (589)
|-.++..+
T Consensus 215 i~~vF~~W 222 (473)
T COG0362 215 IAEVFEEW 222 (473)
T ss_pred HHHHHHHh
Confidence 98887444
No 207
>TIGR00112 proC pyrroline-5-carboxylate reductase. This enzyme catalyzes the final step in proline biosynthesis. Among the four paralogs in Bacillus subtilis (proG, proH, proI, and comER), ComER is the most divergent and does not prevent proline auxotrophy from mutation of the other three. It is excluded from the seed and scores between the trusted and noise cutoffs.
Probab=98.75 E-value=2.2e-07 Score=92.16 Aligned_cols=166 Identities=15% Similarity=0.089 Sum_probs=120.7
Q ss_pred CeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cCCCCCCEEEEeccCChHHHHHHHHHHH
Q 007805 332 IYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKDVDMVIEAVIESVPLKQKIFSELE 410 (589)
Q Consensus 332 ~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~aDlVIeavpe~~~~k~~v~~~l~ 410 (589)
++|++++|++++++...++ ++ +..+.+. +.+++||+||+||+ +....+++.++.
T Consensus 10 ~~I~v~~R~~e~~~~l~~~----------------------~g-~~~~~~~~e~~~~aDiIiLaVk--P~~i~~vl~~l~ 64 (245)
T TIGR00112 10 YDIIVINRSPEKLAALAKE----------------------LG-IVASSDAQEAVKEADVVFLAVK--PQDLEEVLSELK 64 (245)
T ss_pred CeEEEEcCCHHHHHHHHHH----------------------cC-cEEeCChHHHHhhCCEEEEEeC--HHHHHHHHHHHh
Confidence 6899999998887653221 11 2233444 55789999999998 667788899998
Q ss_pred HhCCCCcEEEecCCCCCHHHHhcccCCCCcEEEecCCCCCCCCCeeeEe-cCCCCCHHHHHHHHHHHHHcCCeeEEEcC-
Q 007805 411 KACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIV-RTERTSAQVILDLMTVGKIIKKVPVVVGN- 488 (589)
Q Consensus 411 ~~~~~~~ii~s~ts~~~~~~~~~~~~~~~r~ig~h~~~p~~~~~lveiv-~~~~t~~e~~~~~~~l~~~lG~~~v~v~d- 488 (589)
+.+.++.+|+|.+.+++++.+...++...+++..+|+.|......+..+ .++..+++..+.+..++..+|....+-.+
T Consensus 65 ~~~~~~~~ivS~~agi~~~~l~~~~~~~~~ivR~mPn~~~~~~~g~t~~~~~~~~~~~~~~~v~~lf~~~G~~~~v~E~~ 144 (245)
T TIGR00112 65 SEKGKDKLLISIAAGVTLEKLSQLLGGTRRVVRVMPNTPAKVGAGVTAIAANANVSEEDRALVLALFKAVGEVVELPEAL 144 (245)
T ss_pred hhccCCCEEEEecCCCCHHHHHHHcCCCCeEEEECCChHHHHhCCeEEEecCCCCCHHHHHHHHHHHHhCCCEEEECHHH
Confidence 8777788999999999999998888755679999999888776665544 67788899999999999999977755311
Q ss_pred CCCccc-ccc---cHHHHHHHH--HHHHcCCCHHHHHHHH
Q 007805 489 CTGFAV-NRA---FFPYSQSAR--LLVSLGVDVFRIDSAI 522 (589)
Q Consensus 489 ~~Gfi~-nRi---~~~~~~Ea~--~l~~~Gv~~~~iD~~~ 522 (589)
...+.+ .-. ++.++.|++ ..+..|+++++..+++
T Consensus 145 ~~~~talsgsgPA~~~~~~~al~~~~v~~Gl~~~~A~~lv 184 (245)
T TIGR00112 145 MDAVTALSGSGPAYVFLFIEALADAGVKQGLPRELALELA 184 (245)
T ss_pred cchHHhhccCcHHHHHHHHHHHHHHHHHcCCCHHHHHHHH
Confidence 111111 111 233444554 5567799999888876
No 208
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=98.75 E-value=7.2e-07 Score=92.01 Aligned_cols=175 Identities=8% Similarity=0.085 Sum_probs=103.9
Q ss_pred ccceEEEEcCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCC-CCHHHHHHHhhcccccCCccCC
Q 007805 307 GVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGK-LTQDKANNALKMLKGVLDYSEF 385 (589)
Q Consensus 307 ~~~kI~IIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~-~~~~~~~~~~~~i~~~~~~~~~ 385 (589)
..+||+|||+|.||+.+|..|+++|++|+++.+++. +.. .+.|. +....-+.........++.+..
T Consensus 4 ~~m~I~IiG~GaiG~~lA~~L~~~g~~V~~~~r~~~--~~~-----------~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 70 (313)
T PRK06249 4 ETPRIGIIGTGAIGGFYGAMLARAGFDVHFLLRSDY--EAV-----------RENGLQVDSVHGDFHLPPVQAYRSAEDM 70 (313)
T ss_pred cCcEEEEECCCHHHHHHHHHHHHCCCeEEEEEeCCH--HHH-----------HhCCeEEEeCCCCeeecCceEEcchhhc
Confidence 446899999999999999999999999999999863 211 11110 0000000000112233444556
Q ss_pred CCCCEEEEeccCChHHHHHHHHHHHHhCCCCcEEEecCCCCCHH-HHhcccCCCCcEEEe-cC-----CCCCC---CC-C
Q 007805 386 KDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLN-IVGEKTSSQDRIIGA-HF-----FSPAH---VM-P 454 (589)
Q Consensus 386 ~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~-~~~~~~~~~~r~ig~-h~-----~~p~~---~~-~ 454 (589)
..+|+||.||+... ..+++..+.+.+.++++|++...++... .+...++. ++++.. .+ ..|.. .. .
T Consensus 71 ~~~D~vilavK~~~--~~~~~~~l~~~~~~~~~iv~lqNG~~~~e~l~~~~~~-~~v~~g~~~~~a~~~~pg~v~~~~~g 147 (313)
T PRK06249 71 PPCDWVLVGLKTTA--NALLAPLIPQVAAPDAKVLLLQNGLGVEEQLREILPA-EHLLGGLCFICSNRVGPGVIHHLAYG 147 (313)
T ss_pred CCCCEEEEEecCCC--hHhHHHHHhhhcCCCCEEEEecCCCCcHHHHHHHCCC-CcEEEEeeeEeEecCCCeEEEECCCC
Confidence 78999999997432 3578888999998888888777777654 34444443 344332 22 22210 00 0
Q ss_pred eeeEecCCCCC-----HHHHHHHHHHHHHcCCeeEEEcCCCCcccccc
Q 007805 455 LLEIVRTERTS-----AQVILDLMTVGKIIKKVPVVVGNCTGFAVNRA 497 (589)
Q Consensus 455 lveiv~~~~t~-----~e~~~~~~~l~~~lG~~~v~v~d~~Gfi~nRi 497 (589)
-+.+-.....+ .+.++.+.++++..|..+.+..|....+..++
T Consensus 148 ~~~iG~~~~~~~~~~~~~~~~~l~~~l~~ag~~~~~~~di~~~~W~Kl 195 (313)
T PRK06249 148 RVNLGYHSGPAADDGITARVEEGAALFRAAGIDSQAMPDLAQARWQKL 195 (313)
T ss_pred cEEEecCCCCcccchHHHHHHHHHHHHHhCCCCceeCchHHHHHHhHh
Confidence 11111111112 46677788889998988777777665444443
No 209
>PRK12480 D-lactate dehydrogenase; Provisional
Probab=98.67 E-value=6.2e-08 Score=100.07 Aligned_cols=100 Identities=15% Similarity=0.039 Sum_probs=78.1
Q ss_pred ceEEEEcCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cCCCC
Q 007805 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD 387 (589)
Q Consensus 309 ~kI~IIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~ 387 (589)
++|+|||+|.||.++|..+...|++|++||++++..... +....++ +.+++
T Consensus 147 ~~VgIIG~G~IG~~vA~~L~~~G~~V~~~d~~~~~~~~~----------------------------~~~~~~l~ell~~ 198 (330)
T PRK12480 147 MTVAIIGTGRIGAATAKIYAGFGATITAYDAYPNKDLDF----------------------------LTYKDSVKEAIKD 198 (330)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCEEEEEeCChhHhhhh----------------------------hhccCCHHHHHhc
Confidence 479999999999999999999999999999987542110 1123344 66899
Q ss_pred CCEEEEeccCChHHHHHHHHHHHHhCCCCcEEEecCCCCCH--HHHhcccC
Q 007805 388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDL--NIVGEKTS 436 (589)
Q Consensus 388 aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~--~~~~~~~~ 436 (589)
||+|++++|...+.+..+.+++.+.++++++++..+.+..+ ..+.+.+.
T Consensus 199 aDiVil~lP~t~~t~~li~~~~l~~mk~gavlIN~aRG~~vd~~aL~~aL~ 249 (330)
T PRK12480 199 ADIISLHVPANKESYHLFDKAMFDHVKKGAILVNAARGAVINTPDLIAAVN 249 (330)
T ss_pred CCEEEEeCCCcHHHHHHHhHHHHhcCCCCcEEEEcCCccccCHHHHHHHHH
Confidence 99999999999888888888888999999999877766444 34545543
No 210
>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent. The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.
Probab=98.67 E-value=5.7e-08 Score=99.37 Aligned_cols=100 Identities=17% Similarity=0.262 Sum_probs=68.9
Q ss_pred ceEEEEcCCCCcHHHHHHHHhCCC-eEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCccCCCC
Q 007805 309 RKVAVIGGGLMGSGIATAHILNNI-YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKD 387 (589)
Q Consensus 309 ~kI~IIG~G~mG~~iA~~l~~~G~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~ 387 (589)
+||+|||+|.||.++|..++..|+ +|+++|++++. .++... ... +.+. ......+++.+++++.+++
T Consensus 2 ~KV~VIGaG~vG~~iA~~la~~g~~~VvlvDi~~~l-~~g~a~--d~~----~~~~-----~~~~~~~i~~t~d~~~~~~ 69 (305)
T TIGR01763 2 KKISVIGAGFVGATTAFRLAEKELADLVLLDVVEGI-PQGKAL--DMY----EASP-----VGGFDTKVTGTNNYADTAN 69 (305)
T ss_pred CEEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCCCh-hHHHHH--hhh----hhhh-----ccCCCcEEEecCCHHHhCC
Confidence 489999999999999999999887 89999998664 332210 000 1110 0111246777888877999
Q ss_pred CCEEEEeccC--------------ChHHHHHHHHHHHHhCCCCcEEEe
Q 007805 388 VDMVIEAVIE--------------SVPLKQKIFSELEKACPPHCILAT 421 (589)
Q Consensus 388 aDlVIeavpe--------------~~~~k~~v~~~l~~~~~~~~ii~s 421 (589)
||+||.+++. +..+.+++.+++.++. ++++|+.
T Consensus 70 aDiVIitag~p~~~~~sR~~l~~~N~~iv~~i~~~I~~~~-p~~~iIv 116 (305)
T TIGR01763 70 SDIVVITAGLPRKPGMSREDLLSMNAGIVREVTGRIMEHS-PNPIIVV 116 (305)
T ss_pred CCEEEEcCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHC-CCeEEEE
Confidence 9999999972 4456667777788886 4555443
No 211
>cd07015 Clp_protease_NfeD Nodulation formation efficiency D (NfeD) is a membrane-bound ClpP-class protease. Nodulation formation efficiency D (NfeD; stomatin operon partner protein, STOPP; DUF107) is a member of membrane-anchored ClpP-class proteases. Currently, more than 300 NfeD homologs have been identified - all of which are bacterial or archaeal in origin. Majority of these genomes have been shown to possess operons containing a homologous NfeD/stomatin gene pair, causing NfeD to be previously named STOPP (stomatin operon partner protein). NfeD homologs can be divided into two groups: long and short forms. Long-form homologs have a putative ClpP-class serine protease domain while the short form homologs do not. Downstream from the ClpP-class domain is the so-called NfeD or DUF107 domain. N-terminal region of the NfeD homolog PH1510 (1510-N or PH1510-N) from Pyrococcus horikoshii has been shown to possess serine protease activity and has a Ser-Lys catalytic dyad, preferentially cle
Probab=98.66 E-value=6.9e-07 Score=82.79 Aligned_cols=142 Identities=25% Similarity=0.291 Sum_probs=101.9
Q ss_pred CCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCCcCCCCchhhhhccCCCcccccchhHHHHHHHHHHhCCCcEEEEeC
Q 007805 27 ALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVE 106 (589)
Q Consensus 27 ~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kp~iaav~ 106 (589)
.+++.+..-|.+.++.++++ .++.|+|.=. |.|+++.. ...++ +.+...++||++.|+
T Consensus 9 ~I~~~~~~~l~~~l~~A~~~-~~~~i~l~in----SPGG~v~~----------------~~~I~-~~i~~~~~pvv~~v~ 66 (172)
T cd07015 9 QITSYTYDQFDRYITIAEQD-NAEAIIIELD----TPGGRADA----------------AGNIV-QRIQQSKIPVIIYVY 66 (172)
T ss_pred EECHhHHHHHHHHHHHHhcC-CCCeEEEEEE----CCCCCHHH----------------HHHHH-HHHHhcCcCEEEEEe
Confidence 36778888899999998865 5788887522 22333322 12444 667789999999999
Q ss_pred ---CcccchhhHHhhhcCEEEEeCCceEeccccccCCCCC----h-h---hhhh------HhhhcC--HHHHHHHHHcCC
Q 007805 107 ---GLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPG----F-G---GTQR------LPRLVG--LSKAIEMMLLSK 167 (589)
Q Consensus 107 ---G~a~GgG~~lala~D~~ia~~~a~~~~pe~~~Gl~p~----~-g---~~~~------l~~~~G--~~~a~~l~ltg~ 167 (589)
|.|.++|.-++++||.+++.++++++....-.|.-+. . . -+.. +.+.-| ...+..++....
T Consensus 67 p~g~~AaSag~~I~~a~~~i~m~p~s~iG~~~pi~~~g~~~~~~~~~~ki~~~~~~~~r~~A~~~Gr~~~~a~~~v~~~~ 146 (172)
T cd07015 67 PPGASAASAGTYIALGSHLIAMAPGTSIGACRPILGYSQNGSIIEAPPKITNYFIAYIKSLAQESGRNATIAEEFITKDL 146 (172)
T ss_pred cCCCeehhHHHHHHHhcCceEECCCCEEEEccccccCCCCCccccchHHHHHHHHHHHHHHHHHHCcCHHHHHHHHHhhc
Confidence 9999999999999999999999999988775332110 0 0 0111 122233 466778888889
Q ss_pred CCCHHHHHHcCCcceecCc-hHHH
Q 007805 168 SITSEEGWKLGLIDAVVTS-EELL 190 (589)
Q Consensus 168 ~~~a~~A~~~Glv~~vv~~-~~l~ 190 (589)
.++++||+++|++|.+++. ++|+
T Consensus 147 ~lta~EA~~~G~iD~ia~~~~~ll 170 (172)
T cd07015 147 SLTPEEALKYGVIEVVARDINELL 170 (172)
T ss_pred CcCHHHHHHcCCceeeeCCHHHHh
Confidence 9999999999999999854 4443
No 212
>cd00650 LDH_MDH_like NAD-dependent, lactate dehydrogenase-like, 2-hydroxycarboxylate dehydrogenase family. Members of this family include ubiquitous enzymes like L-lactate dehydrogenases (LDH), L-2-hydroxyisocaproate dehydrogenases, and some malate dehydrogenases (MDH). LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH/MDH-like proteins are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains
Probab=98.57 E-value=1.5e-07 Score=94.58 Aligned_cols=97 Identities=29% Similarity=0.350 Sum_probs=75.7
Q ss_pred EEEEcC-CCCcHHHHHHHHhCC----CeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cC
Q 007805 311 VAVIGG-GLMGSGIATAHILNN----IYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SE 384 (589)
Q Consensus 311 I~IIG~-G~mG~~iA~~l~~~G----~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~ 384 (589)
|+|||+ |.||.++|..++..| .+|+++|+++++++.....++...... ...+++.++|+ ++
T Consensus 1 I~IIGagG~vG~~ia~~l~~~~~~~~~el~L~D~~~~~l~~~~~dl~~~~~~~-------------~~~~i~~~~d~~~~ 67 (263)
T cd00650 1 IAVIGAGGNVGPALAFGLADGSVLLAIELVLYDIDEEKLKGVAMDLQDAVEPL-------------ADIKVSITDDPYEA 67 (263)
T ss_pred CEEECCCChHHHHHHHHHHhCCCCcceEEEEEeCCcccchHHHHHHHHhhhhc-------------cCcEEEECCchHHH
Confidence 689999 999999999999999 799999999988777555544332211 11356677774 88
Q ss_pred CCCCCEEEE--------------eccCChHHHHHHHHHHHHhCCCCcEEEe
Q 007805 385 FKDVDMVIE--------------AVIESVPLKQKIFSELEKACPPHCILAT 421 (589)
Q Consensus 385 ~~~aDlVIe--------------avpe~~~~k~~v~~~l~~~~~~~~ii~s 421 (589)
+++||+||+ .+.++..+++++.+++.+++ |+++++.
T Consensus 68 ~~~aDiVv~t~~~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~-p~a~~i~ 117 (263)
T cd00650 68 FKDADVVIITAGVGRKPGMGRLDLLKRNVPIVKEIGDNIEKYS-PDAWIIV 117 (263)
T ss_pred hCCCCEEEECCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHC-CCeEEEE
Confidence 999999999 66677889999999999998 5555543
No 213
>PRK10949 protease 4; Provisional
Probab=98.56 E-value=8.4e-07 Score=98.35 Aligned_cols=162 Identities=20% Similarity=0.231 Sum_probs=105.2
Q ss_pred cCcEEEEEeCCC----C--CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCCcCCCCchhhhhccCCCcccccchh
Q 007805 12 NDGVAIITLINP----P--VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDV 85 (589)
Q Consensus 12 ~~~v~~i~l~~p----~--~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~ 85 (589)
.+.|++|.++.. + .+.++. +.+.+.|+++..|++||+|||.-..+ |+.... .+.
T Consensus 325 ~~~Iavi~~~G~I~~g~~~~g~~~~---~~~~~~l~~a~~D~~vkaVvLrInSp----GGs~~a-------------se~ 384 (618)
T PRK10949 325 GGSIAVIFANGAIMDGEETPGNVGG---DTTAAQIRDARLDPKVKAIVLRVNSP----GGSVTA-------------SEV 384 (618)
T ss_pred CCeEEEEEEEEEEcCCCCcCCCcCH---HHHHHHHHHHHhCCCCcEEEEEecCC----CCcHHH-------------HHH
Confidence 467999998753 1 234444 56788899999999999999975432 221111 011
Q ss_pred HHHHHHHHHHhCCCcEEEEeCCcccchhhHHhhhcCEEEEeCCceEecccc------------ccCCCCChhhh------
Q 007805 86 SVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPEL------------TLGVIPGFGGT------ 147 (589)
Q Consensus 86 ~~~~~~~~l~~~~kp~iaav~G~a~GgG~~lala~D~~ia~~~a~~~~pe~------------~~Gl~p~~g~~------ 147 (589)
..+.+ ..++...||||+.+.|.|..||+-++.+||.++|.+.+..+..-+ ++|+-++.-.+
T Consensus 385 i~~~i-~~~r~~gKPVvas~~~~aASggY~iA~aad~I~a~p~t~tGSIGV~~~~~~~~~ll~klGV~~~~~~~~~~~~~ 463 (618)
T PRK10949 385 IRAEL-AAARAAGKPVVVSMGGMAASGGYWISTPANYIVASPSTLTGSIGIFGVINTVENSLDSIGVHTDGVSTSPLADV 463 (618)
T ss_pred HHHHH-HHHHhcCCcEEEEECCCCccHHHHHHHhcCEEEECCCCceeeCcEEEEccCHHHHHHhcCCceeEEeccccCCc
Confidence 22333 345677899999999999999999999999999999775443222 23432211100
Q ss_pred -----------hhH-----------------hhhcCHHHHHHHHHcCCCCCHHHHHHcCCcceecCchHHHHHHHH
Q 007805 148 -----------QRL-----------------PRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRL 195 (589)
Q Consensus 148 -----------~~l-----------------~~~~G~~~a~~l~ltg~~~~a~~A~~~Glv~~vv~~~~l~~~a~~ 195 (589)
..+ .|.+..... +-+..|+.+++++|++.||||++-..++..+.+.+
T Consensus 464 ~~~~~~s~e~~~~~q~~ld~~y~~F~~~Va~~R~~~~~~v-~~ia~Grv~tg~~A~~~GLVD~lG~~~~ai~~a~~ 538 (618)
T PRK10949 464 SITKALPPEFQQMMQLSIENGYKRFITLVADSRHKTPEQI-DKIAQGHVWTGQDAKANGLVDSLGDFDDAVAKAAE 538 (618)
T ss_pred cccCCCCHHHHHHHHHHHHHHHHHHHHHHHhhCCCCHHHH-HHHhcCCcccHHHHHHcCCCccCCCHHHHHHHHHH
Confidence 000 122222322 33568999999999999999999765554444333
No 214
>COG4007 Predicted dehydrogenase related to H2-forming N5,N10-methylenetetrahydromethanopterin dehydrogenase [General function prediction only]
Probab=98.56 E-value=1.3e-06 Score=83.30 Aligned_cols=144 Identities=17% Similarity=0.139 Sum_probs=97.5
Q ss_pred cHHHHHHHHhCCCeEEEEeCChHHHHHH-HHHHHHHHHhhHhcCCCCHHHHHHHhhcccccC-CccCCCCCCEEEEeccC
Q 007805 320 GSGIATAHILNNIYVVLKEVNSEYLLKG-IKTIEANVRGLVTRGKLTQDKANNALKMLKGVL-DYSEFKDVDMVIEAVIE 397 (589)
Q Consensus 320 G~~iA~~l~~~G~~V~~~d~~~~~~~~~-~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~-~~~~~~~aDlVIeavpe 397 (589)
|+.||..++.+||+|++.|.|.+-.+.. .+++ -. ..+..++ |.++++.+++.|+-.|=
T Consensus 33 Ga~mAiefAeAGHDVVLaePn~d~~dd~~w~~v-------ed-------------AGV~vv~dD~eaa~~~Ei~VLFTPF 92 (340)
T COG4007 33 GARMAIEFAEAGHDVVLAEPNRDIMDDEHWKRV-------ED-------------AGVEVVSDDAEAAEHGEIHVLFTPF 92 (340)
T ss_pred chHHHHHHHHcCCcEEeecCCccccCHHHHHHH-------Hh-------------cCcEEecCchhhhhcceEEEEeccc
Confidence 7889999999999999999998766553 1211 11 2244444 44889999999999983
Q ss_pred ChHHHHHHHHHHHHhCCCCcEEEecCCCCCHH----HHhcccCCCCcEEEecCCCCCCCCCe-----eeEecCCC-----
Q 007805 398 SVPLKQKIFSELEKACPPHCILATNTSTIDLN----IVGEKTSSQDRIIGAHFFSPAHVMPL-----LEIVRTER----- 463 (589)
Q Consensus 398 ~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~----~~~~~~~~~~r~ig~h~~~p~~~~~l-----veiv~~~~----- 463 (589)
-. ..-.+.++|.++++.+++|+ ||-+.++- .+...+..+.+-+|...+.|.-+ |. .-++.+..
T Consensus 93 Gk-~T~~Iarei~~hvpEgAVic-nTCT~sp~vLy~~LE~~Lr~kR~dVGvssmHPAgv-PGtp~h~~yviagr~t~g~e 169 (340)
T COG4007 93 GK-ATFGIAREILEHVPEGAVIC-NTCTVSPVVLYYSLEGELRTKREDVGVSSMHPAGV-PGTPQHGHYVIAGRSTEGKE 169 (340)
T ss_pred ch-hhHHHHHHHHhhCcCCcEec-ccccCchhHHHHHhhhhhcCchhhcCccccCCCCC-CCCCCCceEEEeccCCCcee
Confidence 21 34477789999999999885 33333322 34445555555566655555421 11 11333333
Q ss_pred -CCHHHHHHHHHHHHHcCCeeEEE
Q 007805 464 -TSAQVILDLMTVGKIIKKVPVVV 486 (589)
Q Consensus 464 -t~~e~~~~~~~l~~~lG~~~v~v 486 (589)
.++|.++++.++.++.||.++++
T Consensus 170 lATeEQi~r~velaes~Gk~~yv~ 193 (340)
T COG4007 170 LATEEQIERCVELAESTGKEVYVL 193 (340)
T ss_pred eccHHHHHHHHHHHHhcCCceEec
Confidence 37899999999999999999987
No 215
>cd07013 S14_ClpP Caseinolytic protease (ClpP) is an ATP-dependent, highly conserved serine protease. Clp protease (caseinolytic protease; ClpP; Peptidase S14) is a highly conserved serine protease present throughout in bacteria and eukaryota, but seems to be absent in archaea, mollicutes and some fungi. Clp proteases are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. Additionally, they are implicated in the control of cell growth, targeting DNA-binding protein from starved cells. ClpP has also been linked to the tight regulation of virulence genes in the pathogens Listeria monocytogenes and Salmonella typhimurium. This enzyme belong to the family of ATP-dependent proteases; the functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which are required for effective levels of proteas
Probab=98.55 E-value=5.8e-07 Score=83.14 Aligned_cols=132 Identities=18% Similarity=0.190 Sum_probs=92.7
Q ss_pred CCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCCcCCCCchhhhhccCCCcccccchhHHHHHHHHHHhCCCcEEEEeCC
Q 007805 28 LAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEG 107 (589)
Q Consensus 28 l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kp~iaav~G 107 (589)
++..+.+++.+.|..++.++..+.|+|.=. |.|+++. ....++ +.+...++|+++.+.|
T Consensus 9 I~~~~~~~~~~~L~~l~~~~~~~~i~l~In----SpGG~v~----------------~~~~i~-~~i~~~~~~v~~~~~g 67 (162)
T cd07013 9 VEDISANQFAAQLLFLGAVNPEKDIYLYIN----SPGGDVF----------------AGMAIY-DTIKFIKADVVTIIDG 67 (162)
T ss_pred ECcHHHHHHHHHHHHHhcCCCCCCEEEEEE----CCCCcHH----------------HHHHHH-HHHHhcCCCceEEEEe
Confidence 567889999999999998877777777422 2233321 122455 6788899999999999
Q ss_pred cccchhhHHhhhcC--EEEEeCCceEeccccccCCCCChhhhh------------------hHhhhcC--HHHHHHHHHc
Q 007805 108 LALGGGLELAMGCH--ARIAAPKTQLGLPELTLGVIPGFGGTQ------------------RLPRLVG--LSKAIEMMLL 165 (589)
Q Consensus 108 ~a~GgG~~lala~D--~~ia~~~a~~~~pe~~~Gl~p~~g~~~------------------~l~~~~G--~~~a~~l~lt 165 (589)
.|.++|.-++++|| .|++.++++|.+....-+. +|... .+.+.-| .....+++-.
T Consensus 68 ~aaS~~~~i~~a~~~g~r~~~p~a~~~ih~~~~~~---~g~~~d~~~~~~~l~~~~~~~~~~~a~~tg~~~~~i~~~~~~ 144 (162)
T cd07013 68 LAASMGSVIAMAGAKGKRFILPNAMMMIHQPWGGT---LGDATDMRIYADLLLKVEGNLVSAYAHKTGQSEEELHADLER 144 (162)
T ss_pred ehhhHHHHHHHcCCCCcEEEecCEEEEEccCcccc---cCCHHHHHHHHHHHHHHHHHHHHHHHHHhCcCHHHHHHHHcC
Confidence 99999999999999 6777777777654332121 11110 1122223 4555667778
Q ss_pred CCCCCHHHHHHcCCccee
Q 007805 166 SKSITSEEGWKLGLIDAV 183 (589)
Q Consensus 166 g~~~~a~~A~~~Glv~~v 183 (589)
+..++|+||+++||||++
T Consensus 145 ~~~~sa~eA~~~GliD~i 162 (162)
T cd07013 145 DTWLSAREAVEYGFADTI 162 (162)
T ss_pred CccccHHHHHHcCCCCcC
Confidence 888899999999999985
No 216
>PRK00277 clpP ATP-dependent Clp protease proteolytic subunit; Reviewed
Probab=98.46 E-value=1.2e-06 Score=83.86 Aligned_cols=135 Identities=20% Similarity=0.203 Sum_probs=89.5
Q ss_pred CCCCHHHHHHHHHHHHHHhcCCCceEEEE--EcCCCCCcCCCCchhhhhccCCCcccccchhHHHHHHHHHHhCCCcEEE
Q 007805 26 NALAIPIVAGLKDKFEEATSRDDVKAIVL--TGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVA 103 (589)
Q Consensus 26 N~l~~~~~~~l~~~l~~~~~~~~v~~vvl--~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kp~ia 103 (589)
..++..+.+.+...+..++.++..+-|.+ .+.| +|+. ....++ +.|...+.|+++
T Consensus 38 g~I~~~~~~~i~~~L~~l~~~~~~~~I~l~InSpG------G~v~----------------~g~~I~-d~i~~~~~~v~t 94 (200)
T PRK00277 38 GEVEDHMANLIVAQLLFLEAEDPDKDIYLYINSPG------GSVT----------------AGLAIY-DTMQFIKPDVST 94 (200)
T ss_pred CEECHHHHHHHHHHHHHhhccCCCCCEEEEEECCC------CcHH----------------HHHHHH-HHHHhcCCCEEE
Confidence 45788999999999998886654444444 3333 3322 123455 667788899999
Q ss_pred EeCCcccchhhHHhhhcC--EEEEeCCceEeccccccCCCCChhhh------------------hhHhhhcC--HHHHHH
Q 007805 104 AVEGLALGGGLELAMGCH--ARIAAPKTQLGLPELTLGVIPGFGGT------------------QRLPRLVG--LSKAIE 161 (589)
Q Consensus 104 av~G~a~GgG~~lala~D--~~ia~~~a~~~~pe~~~Gl~p~~g~~------------------~~l~~~~G--~~~a~~ 161 (589)
.+.|.|.+.|..++++++ .|++.+++++.+....-|. +|-+ ..+...-| .....+
T Consensus 95 ~~~G~aaS~a~~I~~ag~~~~r~~~p~s~imih~p~~~~---~G~a~di~~~a~~l~~~~~~~~~~~a~~tg~~~~~i~~ 171 (200)
T PRK00277 95 ICIGQAASMGAFLLAAGAKGKRFALPNSRIMIHQPLGGF---QGQATDIEIHAREILKLKKRLNEILAEHTGQPLEKIEK 171 (200)
T ss_pred EEEeEeccHHHHHHhcCCCCCEEEcCCceEEeccCcccc---cCChhHHHHHHHHHHHHHHHHHHHHHHHHCcCHHHHHH
Confidence 999999999999999743 4666555555544332111 1111 11233333 355567
Q ss_pred HHHcCCCCCHHHHHHcCCcceecCc
Q 007805 162 MMLLSKSITSEEGWKLGLIDAVVTS 186 (589)
Q Consensus 162 l~ltg~~~~a~~A~~~Glv~~vv~~ 186 (589)
++-.+..++|+||+++||||+|+..
T Consensus 172 ~~~~~~~lsa~EA~e~GliD~Ii~~ 196 (200)
T PRK00277 172 DTDRDNFMSAEEAKEYGLIDEVLTK 196 (200)
T ss_pred HhhCCccccHHHHHHcCCccEEeec
Confidence 7778889999999999999999854
No 217
>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.
Probab=98.44 E-value=4.9e-07 Score=86.57 Aligned_cols=105 Identities=19% Similarity=0.267 Sum_probs=72.7
Q ss_pred ceEEEEcCCCCcHHHHHHHHhCCC-eEEEEeCC---hHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc--
Q 007805 309 RKVAVIGGGLMGSGIATAHILNNI-YVVLKEVN---SEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-- 382 (589)
Q Consensus 309 ~kI~IIG~G~mG~~iA~~l~~~G~-~V~~~d~~---~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-- 382 (589)
.+|+|||+|.||+.+|..|++.|+ +++++|.+ ++.+.+-. + ..-..|+.........+.++....+.
T Consensus 22 ~~V~IvG~GglGs~ia~~La~~Gvg~i~lvD~D~ve~sNL~Rq~------~-~~~~iG~~Ka~~~~~~l~~inp~~~i~~ 94 (200)
T TIGR02354 22 ATVAICGLGGLGSNVAINLARAGIGKLILVDFDVVEPSNLNRQQ------Y-KASQVGEPKTEALKENISEINPYTEIEA 94 (200)
T ss_pred CcEEEECcCHHHHHHHHHHHHcCCCEEEEECCCEEccccccccc------C-ChhhCCCHHHHHHHHHHHHHCCCCEEEE
Confidence 679999999999999999999999 79999999 65554310 0 00112222222233333333322222
Q ss_pred -----------cCCCCCCEEEEeccCChHHHHHHHHHHHHhCCCCcEEEe
Q 007805 383 -----------SEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILAT 421 (589)
Q Consensus 383 -----------~~~~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s 421 (589)
+.++++|+||+| .++++.|..++.++....+...+++.
T Consensus 95 ~~~~i~~~~~~~~~~~~DlVi~a-~Dn~~~k~~l~~~~~~~~~~~~ii~~ 143 (200)
T TIGR02354 95 YDEKITEENIDKFFKDADIVCEA-FDNAEAKAMLVNAVLEKYKDKYLIAA 143 (200)
T ss_pred eeeeCCHhHHHHHhcCCCEEEEC-CCCHHHHHHHHHHHHHHcCCCcEEEE
Confidence 246789999999 68999999999999988877776653
No 218
>PRK13243 glyoxylate reductase; Reviewed
Probab=98.42 E-value=1.3e-06 Score=90.43 Aligned_cols=102 Identities=15% Similarity=0.100 Sum_probs=75.0
Q ss_pred ceEEEEcCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cCCCC
Q 007805 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD 387 (589)
Q Consensus 309 ~kI~IIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~ 387 (589)
++|+|||+|.||..+|..+...|++|++||+++..... ...+ ... .++ +.+++
T Consensus 151 ktvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~------------~~~~-------------~~~-~~l~ell~~ 204 (333)
T PRK13243 151 KTIGIIGFGRIGQAVARRAKGFGMRILYYSRTRKPEAE------------KELG-------------AEY-RPLEELLRE 204 (333)
T ss_pred CEEEEECcCHHHHHHHHHHHHCCCEEEEECCCCChhhH------------HHcC-------------CEe-cCHHHHHhh
Confidence 78999999999999999999999999999998653211 0001 111 234 56799
Q ss_pred CCEEEEeccCChHHHHHHHHHHHHhCCCCcEEEecCCCCCH--HHHhcccC
Q 007805 388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDL--NIVGEKTS 436 (589)
Q Consensus 388 aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~--~~~~~~~~ 436 (589)
||+|+.++|-..+.+.-+-++..+.++++++++..+.+-.+ ..+.+.+.
T Consensus 205 aDiV~l~lP~t~~T~~~i~~~~~~~mk~ga~lIN~aRg~~vd~~aL~~aL~ 255 (333)
T PRK13243 205 SDFVSLHVPLTKETYHMINEERLKLMKPTAILVNTARGKVVDTKALVKALK 255 (333)
T ss_pred CCEEEEeCCCChHHhhccCHHHHhcCCCCeEEEECcCchhcCHHHHHHHHH
Confidence 99999999988877776667788889999988765554333 34545443
No 219
>PF07991 IlvN: Acetohydroxy acid isomeroreductase, catalytic domain; InterPro: IPR013116 Acetohydroxy acid isomeroreductase catalyses the conversion of acetohydroxy acids into dihydroxy valerates. This reaction is the second in the synthetic pathway of the essential branched side chain amino acids valine and isoleucine.; GO: 0004455 ketol-acid reductoisomerase activity, 0008652 cellular amino acid biosynthetic process, 0055114 oxidation-reduction process; PDB: 1QMG_A 1YVE_J 3FR8_B 3FR7_A 1NP3_C 1YRL_C.
Probab=98.41 E-value=5.8e-07 Score=81.09 Aligned_cols=87 Identities=18% Similarity=0.214 Sum_probs=60.8
Q ss_pred ceEEEEcCCCCcHHHHHHHHhCCCeEEEEeCChH-HHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCccCCCC
Q 007805 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSE-YLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKD 387 (589)
Q Consensus 309 ~kI~IIG~G~mG~~iA~~l~~~G~~V~~~d~~~~-~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~ 387 (589)
++|+|||.|..|.+.|..|.++|++|++-.+..+ ..+++. +.| +...+-.|+++.
T Consensus 5 k~IAViGyGsQG~a~AlNLrDSG~~V~Vglr~~s~s~~~A~-----------~~G-------------f~v~~~~eAv~~ 60 (165)
T PF07991_consen 5 KTIAVIGYGSQGHAHALNLRDSGVNVIVGLREGSASWEKAK-----------ADG-------------FEVMSVAEAVKK 60 (165)
T ss_dssp SEEEEES-SHHHHHHHHHHHHCC-EEEEEE-TTCHHHHHHH-----------HTT--------------ECCEHHHHHHC
T ss_pred CEEEEECCChHHHHHHHHHHhCCCCEEEEecCCCcCHHHHH-----------HCC-------------CeeccHHHHHhh
Confidence 6899999999999999999999999999998876 444442 222 333333378999
Q ss_pred CCEEEEeccCChHHHHHHH-HHHHHhCCCCcEEEe
Q 007805 388 VDMVIEAVIESVPLKQKIF-SELEKACPPHCILAT 421 (589)
Q Consensus 388 aDlVIeavpe~~~~k~~v~-~~l~~~~~~~~ii~s 421 (589)
||+|+..+| -+.-.++| ++|.++++++.++.-
T Consensus 61 aDvV~~L~P--D~~q~~vy~~~I~p~l~~G~~L~f 93 (165)
T PF07991_consen 61 ADVVMLLLP--DEVQPEVYEEEIAPNLKPGATLVF 93 (165)
T ss_dssp -SEEEE-S---HHHHHHHHHHHHHHHS-TT-EEEE
T ss_pred CCEEEEeCC--hHHHHHHHHHHHHhhCCCCCEEEe
Confidence 999999999 44456777 789999999998753
No 220
>PRK13403 ketol-acid reductoisomerase; Provisional
Probab=98.40 E-value=7.1e-07 Score=89.88 Aligned_cols=179 Identities=15% Similarity=0.120 Sum_probs=102.4
Q ss_pred ceEEEEcCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cCCCC
Q 007805 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD 387 (589)
Q Consensus 309 ~kI~IIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~ 387 (589)
++|+|||.|.||.++|..|...|++|++|++.....+.+. ..| .... ++ ++++.
T Consensus 17 KtVGIIG~GsIG~amA~nL~d~G~~ViV~~r~~~s~~~A~-----------~~G-------------~~v~-sl~Eaak~ 71 (335)
T PRK13403 17 KTVAVIGYGSQGHAQAQNLRDSGVEVVVGVRPGKSFEVAK-----------ADG-------------FEVM-SVSEAVRT 71 (335)
T ss_pred CEEEEEeEcHHHHHHHHHHHHCcCEEEEEECcchhhHHHH-----------HcC-------------CEEC-CHHHHHhc
Confidence 6899999999999999999999999999987543322221 111 1222 34 67899
Q ss_pred CCEEEEeccCChHHHHHHH-HHHHHhCCCCcEEEecCCCCCHHHHhcccC-CCCcEEEecCCCCCC----------CCCe
Q 007805 388 VDMVIEAVIESVPLKQKIF-SELEKACPPHCILATNTSTIDLNIVGEKTS-SQDRIIGAHFFSPAH----------VMPL 455 (589)
Q Consensus 388 aDlVIeavpe~~~~k~~v~-~~l~~~~~~~~ii~s~ts~~~~~~~~~~~~-~~~r~ig~h~~~p~~----------~~~l 455 (589)
||+|+.++|. .+. +.++ .++.+.++++++++- +-+..+.-- ...+ ....++-.-|-.|-+ -.|.
T Consensus 72 ADVV~llLPd-~~t-~~V~~~eil~~MK~GaiL~f-~hgfni~~~-~i~pp~~vdv~mvaPKgpG~~vR~~y~~G~Gvp~ 147 (335)
T PRK13403 72 AQVVQMLLPD-EQQ-AHVYKAEVEENLREGQMLLF-SHGFNIHFG-QINPPSYVDVAMVAPKSPGHLVRRVFQEGNGVPA 147 (335)
T ss_pred CCEEEEeCCC-hHH-HHHHHHHHHhcCCCCCEEEE-CCCcceecC-ceeCCCCCeEEEECCCCCChHHHHHHHcCCCcee
Confidence 9999999996 444 4555 579999999997753 223322110 0011 111122222222211 1111
Q ss_pred eeEecCCCCCHHHHHHHHHHHHHcCCee---EEE--cC--CCCccccc-ccH----HHHHHHH-HHHHcCCCHHH
Q 007805 456 LEIVRTERTSAQVILDLMTVGKIIKKVP---VVV--GN--CTGFAVNR-AFF----PYSQSAR-LLVSLGVDVFR 517 (589)
Q Consensus 456 veiv~~~~t~~e~~~~~~~l~~~lG~~~---v~v--~d--~~Gfi~nR-i~~----~~~~Ea~-~l~~~Gv~~~~ 517 (589)
+.-+. ...+-.+.+.+..+.+.+|..- +-+ ++ ..-.+..+ +++ .++..++ -|++.|.+|+.
T Consensus 148 l~av~-qd~sg~a~~~ala~a~~iG~~ragv~~ttf~~EtetDlfgEq~vL~Gg~~~li~~gfe~lveaGy~pe~ 221 (335)
T PRK13403 148 LVAVH-QDATGTALHVALAYAKGVGCTRAGVIETTFQEETETDLFGEQAVLCGGVTALVKAGFETLTEGGYRPEI 221 (335)
T ss_pred EEEEE-ECCCCcHHHHHHHHHHHcCCCceeEEecchHHHHhhhhcccchhhHHHHHHHHHHHHHHHHHcCCCHHH
Confidence 11221 1234557788889999999763 222 22 11223333 233 3344455 56678998874
No 221
>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []. L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....
Probab=98.37 E-value=2e-06 Score=77.61 Aligned_cols=101 Identities=24% Similarity=0.312 Sum_probs=67.5
Q ss_pred ceEEEEcC-CCCcHHHHHHHHhCCC--eEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCccCC
Q 007805 309 RKVAVIGG-GLMGSGIATAHILNNI--YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEF 385 (589)
Q Consensus 309 ~kI~IIG~-G~mG~~iA~~l~~~G~--~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~ 385 (589)
+||+|||+ |..|.++|..+...+. ++.++|++++.++.-...+......... .......+++++
T Consensus 1 ~KV~IiGa~G~VG~~~a~~l~~~~l~~ei~L~D~~~~~~~g~a~Dl~~~~~~~~~-------------~~~i~~~~~~~~ 67 (141)
T PF00056_consen 1 MKVAIIGAAGNVGSTLALLLAQQGLADEIVLIDINEDKAEGEALDLSHASAPLPS-------------PVRITSGDYEAL 67 (141)
T ss_dssp SEEEEESTTSHHHHHHHHHHHHTTTSSEEEEEESSHHHHHHHHHHHHHHHHGSTE-------------EEEEEESSGGGG
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCCceEEeccCcccceeeehhhhhhhhhccc-------------cccccccccccc
Confidence 48999999 9999999999999875 8999999988665543333322211100 112223566899
Q ss_pred CCCCEEEEec--cC------------ChHHHHHHHHHHHHhCCCCcEEEecC
Q 007805 386 KDVDMVIEAV--IE------------SVPLKQKIFSELEKACPPHCILATNT 423 (589)
Q Consensus 386 ~~aDlVIeav--pe------------~~~~k~~v~~~l~~~~~~~~ii~s~t 423 (589)
++||+||.+. |. +..+.+++..++.++. ++++++..|
T Consensus 68 ~~aDivvitag~~~~~g~sR~~ll~~N~~i~~~~~~~i~~~~-p~~~vivvt 118 (141)
T PF00056_consen 68 KDADIVVITAGVPRKPGMSRLDLLEANAKIVKEIAKKIAKYA-PDAIVIVVT 118 (141)
T ss_dssp TTESEEEETTSTSSSTTSSHHHHHHHHHHHHHHHHHHHHHHS-TTSEEEE-S
T ss_pred ccccEEEEeccccccccccHHHHHHHhHhHHHHHHHHHHHhC-CccEEEEeC
Confidence 9999999887 32 2334556666778887 555555443
No 222
>PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional
Probab=98.33 E-value=4.3e-06 Score=85.73 Aligned_cols=102 Identities=11% Similarity=0.071 Sum_probs=74.9
Q ss_pred ceEEEEcCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cCCCC
Q 007805 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD 387 (589)
Q Consensus 309 ~kI~IIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~ 387 (589)
++|+|||.|.||..+|..+...|++|++||++++..... .......++ +.+++
T Consensus 137 ~tvgIvG~G~IG~~vA~~l~afG~~V~~~~~~~~~~~~~--------------------------~~~~~~~~l~e~l~~ 190 (312)
T PRK15469 137 FTIGILGAGVLGSKVAQSLQTWGFPLRCWSRSRKSWPGV--------------------------QSFAGREELSAFLSQ 190 (312)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCCCCCCCc--------------------------eeecccccHHHHHhc
Confidence 689999999999999999999999999999875431110 000111233 66899
Q ss_pred CCEEEEeccCChHHHHHHHHHHHHhCCCCcEEEecCCC--CCHHHHhcccC
Q 007805 388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTST--IDLNIVGEKTS 436 (589)
Q Consensus 388 aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~--~~~~~~~~~~~ 436 (589)
||+|+.++|...+.+.-+-++....++++++++..+-+ +.-+.+.+.+.
T Consensus 191 aDvvv~~lPlt~~T~~li~~~~l~~mk~ga~lIN~aRG~vVde~aL~~aL~ 241 (312)
T PRK15469 191 TRVLINLLPNTPETVGIINQQLLEQLPDGAYLLNLARGVHVVEDDLLAALD 241 (312)
T ss_pred CCEEEECCCCCHHHHHHhHHHHHhcCCCCcEEEECCCccccCHHHHHHHHh
Confidence 99999999998887777767788889999988755544 33345555554
No 223
>PRK07574 formate dehydrogenase; Provisional
Probab=98.31 E-value=1.1e-05 Score=84.64 Aligned_cols=138 Identities=11% Similarity=-0.004 Sum_probs=89.0
Q ss_pred ceEEEEcCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cCCCC
Q 007805 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD 387 (589)
Q Consensus 309 ~kI~IIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~ 387 (589)
++|+|||+|.||..+|..+...|++|+.||+++...+.. ... .+....++ +.+++
T Consensus 193 ktVGIvG~G~IG~~vA~~l~~fG~~V~~~dr~~~~~~~~-----------~~~-------------g~~~~~~l~ell~~ 248 (385)
T PRK07574 193 MTVGIVGAGRIGLAVLRRLKPFDVKLHYTDRHRLPEEVE-----------QEL-------------GLTYHVSFDSLVSV 248 (385)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCEEEEECCCCCchhhH-----------hhc-------------CceecCCHHHHhhc
Confidence 689999999999999999999999999999986321110 000 12222345 66899
Q ss_pred CCEEEEeccCChHHHHHHHHHHHHhCCCCcEEEecCCCCCH--HHHhcccCC-CCcEEEecC--CC------CCCCCCee
Q 007805 388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDL--NIVGEKTSS-QDRIIGAHF--FS------PAHVMPLL 456 (589)
Q Consensus 388 aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~--~~~~~~~~~-~~r~ig~h~--~~------p~~~~~lv 456 (589)
||+|+.++|...+.+.-+=++....++++++++..+.+-.+ ..+.+.+.. .-+-.++-- .. |.+..+.+
T Consensus 249 aDvV~l~lPlt~~T~~li~~~~l~~mk~ga~lIN~aRG~iVDe~AL~~AL~sG~i~GAaLDV~~~EPlp~d~pL~~~pNv 328 (385)
T PRK07574 249 CDVVTIHCPLHPETEHLFDADVLSRMKRGSYLVNTARGKIVDRDAVVRALESGHLAGYAGDVWFPQPAPADHPWRTMPRN 328 (385)
T ss_pred CCEEEEcCCCCHHHHHHhCHHHHhcCCCCcEEEECCCCchhhHHHHHHHHHhCCccEEEEecCCCCCCCCCChHHhCCCe
Confidence 99999999988887665556788889999988765555333 345444432 222233321 12 22445667
Q ss_pred eEecCCC-CCHHHHH
Q 007805 457 EIVRTER-TSAQVIL 470 (589)
Q Consensus 457 eiv~~~~-t~~e~~~ 470 (589)
.++|+-. .+.+..+
T Consensus 329 ilTPHiag~T~e~~~ 343 (385)
T PRK07574 329 GMTPHISGTTLSAQA 343 (385)
T ss_pred EECCccccCcHHHHH
Confidence 7777532 3444443
No 224
>PRK08605 D-lactate dehydrogenase; Validated
Probab=98.30 E-value=9.9e-07 Score=91.41 Aligned_cols=93 Identities=17% Similarity=0.104 Sum_probs=67.6
Q ss_pred ceEEEEcCCCCcHHHHHHHH-hCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cCCC
Q 007805 309 RKVAVIGGGLMGSGIATAHI-LNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFK 386 (589)
Q Consensus 309 ~kI~IIG~G~mG~~iA~~l~-~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~ 386 (589)
++|+|||+|.||.++|..++ ..|.+|+.||+++..... ..+...+++ +.++
T Consensus 147 ~~VgIIG~G~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~---------------------------~~~~~~~~l~ell~ 199 (332)
T PRK08605 147 LKVAVIGTGRIGLAVAKIFAKGYGSDVVAYDPFPNAKAA---------------------------TYVDYKDTIEEAVE 199 (332)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCEEEEECCCccHhHH---------------------------hhccccCCHHHHHH
Confidence 57999999999999999995 468899999988643211 001223345 5679
Q ss_pred CCCEEEEeccCChHHHHHHH-HHHHHhCCCCcEEEecCCCCCHH
Q 007805 387 DVDMVIEAVIESVPLKQKIF-SELEKACPPHCILATNTSTIDLN 429 (589)
Q Consensus 387 ~aDlVIeavpe~~~~k~~v~-~~l~~~~~~~~ii~s~ts~~~~~ 429 (589)
+||+|+.++|.....+. ++ .+..+.++++++++..+.+..++
T Consensus 200 ~aDvIvl~lP~t~~t~~-li~~~~l~~mk~gailIN~sRG~~vd 242 (332)
T PRK08605 200 GADIVTLHMPATKYNHY-LFNADLFKHFKKGAVFVNCARGSLVD 242 (332)
T ss_pred hCCEEEEeCCCCcchhh-hcCHHHHhcCCCCcEEEECCCCcccC
Confidence 99999999997776543 33 45677899999887766665543
No 225
>PRK06436 glycerate dehydrogenase; Provisional
Probab=98.30 E-value=7e-06 Score=83.65 Aligned_cols=135 Identities=10% Similarity=0.036 Sum_probs=88.6
Q ss_pred ceEEEEcCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cCCCC
Q 007805 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD 387 (589)
Q Consensus 309 ~kI~IIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~ 387 (589)
++|+|||+|.||..+|..+...|++|++||++... .+. .....++ +.+++
T Consensus 123 ktvgIiG~G~IG~~vA~~l~afG~~V~~~~r~~~~-----------------~~~------------~~~~~~l~ell~~ 173 (303)
T PRK06436 123 KSLGILGYGGIGRRVALLAKAFGMNIYAYTRSYVN-----------------DGI------------SSIYMEPEDIMKK 173 (303)
T ss_pred CEEEEECcCHHHHHHHHHHHHCCCEEEEECCCCcc-----------------cCc------------ccccCCHHHHHhh
Confidence 78999999999999999888789999999987321 000 0001234 56789
Q ss_pred CCEEEEeccCChHHHHHHHHHHHHhCCCCcEEEecCCCCC--HHHHhcccCCC-CcEEEecCC--CCC---CCCCeeeEe
Q 007805 388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTID--LNIVGEKTSSQ-DRIIGAHFF--SPA---HVMPLLEIV 459 (589)
Q Consensus 388 aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~--~~~~~~~~~~~-~r~ig~h~~--~p~---~~~~lveiv 459 (589)
||+|+.++|...+.+.-+-++....++++++++..+.+-. -..+.+.+... ....++--| .|. +..+.+.++
T Consensus 174 aDiv~~~lp~t~~T~~li~~~~l~~mk~ga~lIN~sRG~~vd~~aL~~aL~~g~i~~a~lDV~~~EP~~~~~~~~nviiT 253 (303)
T PRK06436 174 SDFVLISLPLTDETRGMINSKMLSLFRKGLAIINVARADVVDKNDMLNFLRNHNDKYYLSDVWWNEPIITETNPDNVILS 253 (303)
T ss_pred CCEEEECCCCCchhhcCcCHHHHhcCCCCeEEEECCCccccCHHHHHHHHHcCCceEEEEccCCCCCCCccCCCCCEEEC
Confidence 9999999998888766655667778999998875554433 34555555432 233333322 222 345677788
Q ss_pred cC-C-CCCHHHHHHH
Q 007805 460 RT-E-RTSAQVILDL 472 (589)
Q Consensus 460 ~~-~-~t~~e~~~~~ 472 (589)
|+ . .++++..+.+
T Consensus 254 PHi~g~~t~e~~~~~ 268 (303)
T PRK06436 254 PHVAGGMSGEIMQPA 268 (303)
T ss_pred CccccccCHHHHHHH
Confidence 87 3 3566554443
No 226
>KOG2711 consensus Glycerol-3-phosphate dehydrogenase/dihydroxyacetone 3-phosphate reductase [Energy production and conversion]
Probab=98.27 E-value=2e-06 Score=85.73 Aligned_cols=176 Identities=18% Similarity=0.139 Sum_probs=105.9
Q ss_pred CCccceEEEEcCCCCcHHHHHHHHhC--CC-----eEEEEeCChHHHHHHHHHHHHHHH------hhHhcCCCCHHHHHH
Q 007805 305 PRGVRKVAVIGGGLMGSGIATAHILN--NI-----YVVLKEVNSEYLLKGIKTIEANVR------GLVTRGKLTQDKANN 371 (589)
Q Consensus 305 ~~~~~kI~IIG~G~mG~~iA~~l~~~--G~-----~V~~~d~~~~~~~~~~~~~~~~~~------~~~~~g~~~~~~~~~ 371 (589)
.+...||+|||+|+||++||..+..+ ++ +|.+|-...+.-.+ .+.+...+. +++..-.+
T Consensus 18 ~~~~~kV~ivGsGnWGsaiaki~~~n~~~~~~f~~~Vrmwv~ee~i~~~-~~~L~eiIN~~heN~KYlpg~~l------- 89 (372)
T KOG2711|consen 18 ERDPLKVCIVGSGNWGSAIAKIVGENVKEFPIFDPQVRMWVFEEEINGE-AEKLTEIINSRHENVKYLPGIKL------- 89 (372)
T ss_pred hcCceEEEEEccChHHHHHHHHHhhhhhhccccCceeeEEEeccccCCh-hHHHHHHhccccccccccCCccC-------
Confidence 34457899999999999999988764 22 68888765544332 111111111 12222111
Q ss_pred HhhcccccCCc-cCCCCCCEEEEeccCChHHHHHHHHHHHHhCCCCcEEEecCCCCCHH-----------HHhcccCCCC
Q 007805 372 ALKMLKGVLDY-SEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLN-----------IVGEKTSSQD 439 (589)
Q Consensus 372 ~~~~i~~~~~~-~~~~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~-----------~~~~~~~~~~ 439 (589)
..++.+++|+ +++++||++|-++| .+....++++|..++++++..+|.++++... .|...++-|-
T Consensus 90 -P~NvvAv~dl~ea~~dADilvf~vP--hQf~~~ic~~l~g~vk~~~~aISL~KG~e~~~~g~~i~liS~iI~~~lgI~~ 166 (372)
T KOG2711|consen 90 -PENVVAVPDLVEAAKDADILVFVVP--HQFIPRICEQLKGYVKPGATAISLIKGVEVGEEGPGIRLISQIIHRALGIPC 166 (372)
T ss_pred -CCCeEecchHHHHhccCCEEEEeCC--hhhHHHHHHHHhcccCCCCeEEEeecceeccCCCCceeehHHHHHHHhCCCc
Confidence 2457788888 88999999999999 6778899999999999999999988876643 1222232222
Q ss_pred cEEEe-cCCCCCCCCCeeeEecCCCCCHHHHHHHHHHHHHcCCeeEEEcCCCC
Q 007805 440 RIIGA-HFFSPAHVMPLLEIVRTERTSAQVILDLMTVGKIIKKVPVVVGNCTG 491 (589)
Q Consensus 440 r~ig~-h~~~p~~~~~lveiv~~~~t~~e~~~~~~~l~~~lG~~~v~v~d~~G 491 (589)
.++.. ..-+-.......|-+-+...+.+.-..+..+++.-..+++++.|..|
T Consensus 167 ~vL~GaNiA~EVa~~~f~e~tIg~~~~~~~~~~l~~lf~~p~FrV~~~~D~~~ 219 (372)
T KOG2711|consen 167 SVLMGANIASEVANEKFCETTIGYKDKKEAGILLKKLFRTPYFRVVVVEDADG 219 (372)
T ss_pred eeecCCchHHHHHhccccceeEeccchhhcchHHHHHhCCCceEEEEeccchH
Confidence 21111 11111111122233322222333333577788877778888777665
No 227
>PLN03139 formate dehydrogenase; Provisional
Probab=98.26 E-value=1.7e-05 Score=83.24 Aligned_cols=138 Identities=14% Similarity=0.075 Sum_probs=90.2
Q ss_pred ceEEEEcCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cCCCC
Q 007805 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD 387 (589)
Q Consensus 309 ~kI~IIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~ 387 (589)
++|+|||.|.||..+|..+...|.+|..||+++...+.. .+. .+....++ +.+++
T Consensus 200 ktVGIVG~G~IG~~vA~~L~afG~~V~~~d~~~~~~~~~-----------~~~-------------g~~~~~~l~ell~~ 255 (386)
T PLN03139 200 KTVGTVGAGRIGRLLLQRLKPFNCNLLYHDRLKMDPELE-----------KET-------------GAKFEEDLDAMLPK 255 (386)
T ss_pred CEEEEEeecHHHHHHHHHHHHCCCEEEEECCCCcchhhH-----------hhc-------------CceecCCHHHHHhh
Confidence 689999999999999999999999999999875321111 000 12223355 66789
Q ss_pred CCEEEEeccCChHHHHHHHHHHHHhCCCCcEEEecCCCCCH--HHHhcccCC-CCcEEEecCC--C------CCCCCCee
Q 007805 388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDL--NIVGEKTSS-QDRIIGAHFF--S------PAHVMPLL 456 (589)
Q Consensus 388 aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~--~~~~~~~~~-~~r~ig~h~~--~------p~~~~~lv 456 (589)
||+|+.++|...+.+.-+-+++...++++++++..+-+-.+ +.+.+.+.. .-.-.++--| . |.+..+.+
T Consensus 256 sDvV~l~lPlt~~T~~li~~~~l~~mk~ga~lIN~aRG~iVDe~AL~~AL~sG~l~GAaLDV~~~EPlp~d~pL~~~pNv 335 (386)
T PLN03139 256 CDVVVINTPLTEKTRGMFNKERIAKMKKGVLIVNNARGAIMDTQAVADACSSGHIGGYGGDVWYPQPAPKDHPWRYMPNH 335 (386)
T ss_pred CCEEEEeCCCCHHHHHHhCHHHHhhCCCCeEEEECCCCchhhHHHHHHHHHcCCceEEEEcCCCCCCCCCCChhhcCCCe
Confidence 99999999988887776667788899999988765554333 345454432 2222333322 2 22455677
Q ss_pred eEecCCC-CCHHHHH
Q 007805 457 EIVRTER-TSAQVIL 470 (589)
Q Consensus 457 eiv~~~~-t~~e~~~ 470 (589)
.++|+-. ++.+..+
T Consensus 336 ilTPHiag~t~~~~~ 350 (386)
T PLN03139 336 AMTPHISGTTIDAQL 350 (386)
T ss_pred EEcccccccCHHHHH
Confidence 7777543 3444433
No 228
>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases. L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine
Probab=98.26 E-value=2.3e-06 Score=87.80 Aligned_cols=99 Identities=24% Similarity=0.287 Sum_probs=67.2
Q ss_pred ceEEEEcCCCCcHHHHHHHHhCC--CeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCccCCC
Q 007805 309 RKVAVIGGGLMGSGIATAHILNN--IYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFK 386 (589)
Q Consensus 309 ~kI~IIG~G~mG~~iA~~l~~~G--~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~ 386 (589)
+||+|||+|.+|+++|..++..| ++|+++|+++++++.....+....... +. .......+++.++
T Consensus 1 ~kI~IIGaG~vG~~~a~~l~~~g~~~ei~l~D~~~~~~~~~a~dL~~~~~~~---~~----------~~~i~~~~~~~l~ 67 (306)
T cd05291 1 RKVVIIGAGHVGSSFAYSLVNQGIADELVLIDINEEKAEGEALDLEDALAFL---PS----------PVKIKAGDYSDCK 67 (306)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCcchhhHhHhhHHHHhhcc---CC----------CeEEEcCCHHHhC
Confidence 48999999999999999999999 589999999988766544333221100 00 0011234557789
Q ss_pred CCCEEEEeccC--------------ChHHHHHHHHHHHHhCCCCcEEEe
Q 007805 387 DVDMVIEAVIE--------------SVPLKQKIFSELEKACPPHCILAT 421 (589)
Q Consensus 387 ~aDlVIeavpe--------------~~~~k~~v~~~l~~~~~~~~ii~s 421 (589)
+||+||.++.. +..+.+++..++.++.+ +++++.
T Consensus 68 ~aDIVIitag~~~~~g~~R~dll~~N~~i~~~~~~~i~~~~~-~~~viv 115 (306)
T cd05291 68 DADIVVITAGAPQKPGETRLDLLEKNAKIMKSIVPKIKASGF-DGIFLV 115 (306)
T ss_pred CCCEEEEccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCC-CeEEEE
Confidence 99999998854 33345666677888776 555543
No 229
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=98.25 E-value=4.1e-06 Score=85.97 Aligned_cols=115 Identities=14% Similarity=0.109 Sum_probs=75.0
Q ss_pred ceEEEEcCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCccCCCCC
Q 007805 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKDV 388 (589)
Q Consensus 309 ~kI~IIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~a 388 (589)
+||+|||+|.||+-+|..|+++|++|++++++++.++...++ +.+ .....|... .. ... ..+.+.....
T Consensus 3 m~I~IiGaGaiG~~~a~~L~~~G~~V~lv~r~~~~~~~i~~~--~Gl-~i~~~g~~~------~~-~~~-~~~~~~~~~~ 71 (305)
T PRK05708 3 MTWHILGAGSLGSLWACRLARAGLPVRLILRDRQRLAAYQQA--GGL-TLVEQGQAS------LY-AIP-AETADAAEPI 71 (305)
T ss_pred ceEEEECCCHHHHHHHHHHHhCCCCeEEEEechHHHHHHhhc--CCe-EEeeCCcce------ee-ccC-CCCccccccc
Confidence 479999999999999999999999999999987776654221 000 000011000 00 011 1111334678
Q ss_pred CEEEEeccCChHHHHHHHHHHHHhCCCCcEEEecCCCCCHH-HHhcccC
Q 007805 389 DMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLN-IVGEKTS 436 (589)
Q Consensus 389 DlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~-~~~~~~~ 436 (589)
|+||.|+- ..-..+.++.+.+++.++++|++.-.++... .+...++
T Consensus 72 D~viv~vK--~~~~~~al~~l~~~l~~~t~vv~lQNGv~~~e~l~~~~~ 118 (305)
T PRK05708 72 HRLLLACK--AYDAEPAVASLAHRLAPGAELLLLQNGLGSQDAVAARVP 118 (305)
T ss_pred CEEEEECC--HHhHHHHHHHHHhhCCCCCEEEEEeCCCCCHHHHHHhCC
Confidence 99999993 3334577888999999999888777776654 4555544
No 230
>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase. Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann
Probab=98.24 E-value=1.5e-06 Score=79.69 Aligned_cols=117 Identities=13% Similarity=0.085 Sum_probs=72.1
Q ss_pred ceEEEEcCCCCcHHHHHHHHhCC-CeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cCCC
Q 007805 309 RKVAVIGGGLMGSGIATAHILNN-IYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFK 386 (589)
Q Consensus 309 ~kI~IIG~G~mG~~iA~~l~~~G-~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~ 386 (589)
++|+|||+|.||.+++..+.+.| ++|+++|+++++.+...+.+... . + ... ..+. +.++
T Consensus 20 ~~i~iiG~G~~g~~~a~~l~~~g~~~v~v~~r~~~~~~~~~~~~~~~-------~-~----------~~~-~~~~~~~~~ 80 (155)
T cd01065 20 KKVLILGAGGAARAVAYALAELGAAKIVIVNRTLEKAKALAERFGEL-------G-I----------AIA-YLDLEELLA 80 (155)
T ss_pred CEEEEECCcHHHHHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHhhc-------c-c----------cee-ecchhhccc
Confidence 68999999999999999999986 79999999998876643322100 0 0 011 2233 4478
Q ss_pred CCCEEEEeccCChH-HHHHHHHHHHHhCCCCcEEEecCCCCCHHHHhcccC-CCCcEEEecC
Q 007805 387 DVDMVIEAVIESVP-LKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTS-SQDRIIGAHF 446 (589)
Q Consensus 387 ~aDlVIeavpe~~~-~k~~v~~~l~~~~~~~~ii~s~ts~~~~~~~~~~~~-~~~r~ig~h~ 446 (589)
++|+||.|+|.... .....+. ...+++++++++.++....+.+.+... ...+++..|+
T Consensus 81 ~~Dvvi~~~~~~~~~~~~~~~~--~~~~~~~~~v~D~~~~~~~~~l~~~~~~~g~~~v~g~~ 140 (155)
T cd01065 81 EADLIINTTPVGMKPGDELPLP--PSLLKPGGVVYDVVYNPLETPLLKEARALGAKTIDGLE 140 (155)
T ss_pred cCCEEEeCcCCCCCCCCCCCCC--HHHcCCCCEEEEcCcCCCCCHHHHHHHHCCCceeCCHH
Confidence 99999999987653 1111111 123578888876655433223333322 2334555554
No 231
>cd07017 S14_ClpP_2 Caseinolytic protease (ClpP) is an ATP-dependent, highly conserved serine protease. Clp protease (caseinolytic protease; ClpP; Peptidase S14) is a highly conserved serine protease present throughout in bacteria and eukaryota, but seems to be absent in archaea, mollicutes and some fungi. Clp proteases are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. They are also implicated in the control of cell growth, targeting DNA-binding protein from starved cells. ClpP has also been linked to the tight regulation of virulence genes in the pathogens Listeria monocytogenes and Salmonella typhimurium. This enzyme belong to the family of ATP-dependent proteases; the functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which are required for effective levels of protease activ
Probab=98.24 E-value=6.3e-06 Score=77.04 Aligned_cols=135 Identities=21% Similarity=0.199 Sum_probs=96.3
Q ss_pred CCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCCcCCCCchhhhhccCCCcccccchhHHHHHHHHHHhCCCcEEEEeCC
Q 007805 28 LAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEG 107 (589)
Q Consensus 28 l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kp~iaav~G 107 (589)
++.....++...+..++.++..+.|+|.=. |.|+|+.. ...++ +.|...+.|+++.+.|
T Consensus 18 I~~~~~~~i~~~l~~~~~~~~~~~i~l~in----SpGG~v~~----------------~~~i~-~~l~~~~~~v~t~~~g 76 (171)
T cd07017 18 IDDEVANLIIAQLLYLESEDPKKPIYLYIN----SPGGSVTA----------------GLAIY-DTMQYIKPPVSTICLG 76 (171)
T ss_pred EcHHHHHHHHHHHHHHHccCCCCceEEEEE----CCCCCHHH----------------HHHHH-HHHHhcCCCEEEEEEe
Confidence 678889999999999998766566655311 22333221 22444 6677889999999999
Q ss_pred cccchhhHHhhhcC--EEEEeCCceEeccccccCCCCChhh---------------hhhHhhhc--CHHHHHHHHHcCCC
Q 007805 108 LALGGGLELAMGCH--ARIAAPKTQLGLPELTLGVIPGFGG---------------TQRLPRLV--GLSKAIEMMLLSKS 168 (589)
Q Consensus 108 ~a~GgG~~lala~D--~~ia~~~a~~~~pe~~~Gl~p~~g~---------------~~~l~~~~--G~~~a~~l~ltg~~ 168 (589)
.|.++|.-+++++| .|++.++++|.+.+...+..-...- ...+...- ......+++..+..
T Consensus 77 ~aaS~~~~i~~~g~~~~r~~~~~a~~~~h~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~tg~~~~~i~~~~~~~~~ 156 (171)
T cd07017 77 LAASMGALLLAAGTKGKRYALPNSRIMIHQPLGGAGGQASDIEIQAKEILRLRRRLNEILAKHTGQPLEKIEKDTDRDRY 156 (171)
T ss_pred EehhHHHHHHHcCCCCCEEEccchHHHHcCCCccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhhCCcc
Confidence 99999999999999 7999999999888766544221000 00112222 33455677778999
Q ss_pred CCHHHHHHcCCccee
Q 007805 169 ITSEEGWKLGLIDAV 183 (589)
Q Consensus 169 ~~a~~A~~~Glv~~v 183 (589)
++++||+++||||+|
T Consensus 157 lta~EA~e~GiiD~V 171 (171)
T cd07017 157 MSAEEAKEYGLIDKI 171 (171)
T ss_pred ccHHHHHHcCCCccC
Confidence 999999999999986
No 232
>KOG3124 consensus Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism]
Probab=98.24 E-value=5.6e-06 Score=79.62 Aligned_cols=152 Identities=15% Similarity=0.121 Sum_probs=115.0
Q ss_pred ceEEEEcCCCCcHHHHHHHHhCCC----eEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCccC
Q 007805 309 RKVAVIGGGLMGSGIATAHILNNI----YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSE 384 (589)
Q Consensus 309 ~kI~IIG~G~mG~~iA~~l~~~G~----~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~ 384 (589)
++|++||+|.|-.+++..+...|. ++..+-.+......- +.. ++.-...++.+.
T Consensus 1 ~~~gfigag~ma~ala~g~~~~Gi~~~~~i~~s~~~~~~~~~~----------~~~------------~g~~~~~~n~~~ 58 (267)
T KOG3124|consen 1 MKVGFIGAGNMAQALASGFVASGIIEANRIWASVQTERSLGLM----------FEA------------LGVKTVFTNLEV 58 (267)
T ss_pred CceeEechhhhHHHHHhcccccCCCchhheeeecCchhhhhhh----------hhc------------CCceeeechHHH
Confidence 369999999999999999999885 444444422221110 011 122233444577
Q ss_pred CCCCCEEEEeccCChHHHHHHHHHHHHhCCCCcEEEecCCCCCHHHHhcccCCCCcEEEecCCCCCCCCCeeeE-ecCCC
Q 007805 385 FKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEI-VRTER 463 (589)
Q Consensus 385 ~~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~~~~~~~~~~~r~ig~h~~~p~~~~~lvei-v~~~~ 463 (589)
++.+|++++++- +.+...++.++......+.||+|...+..++.+...++.+.|++..+++.|..+.....+ ..+..
T Consensus 59 ~~~s~v~~~svK--p~~i~~vls~~~~~~~~~~iivS~aaG~tl~~l~~~l~~~~rviRvmpNtp~~v~eg~sv~~~g~~ 136 (267)
T KOG3124|consen 59 LQASDVVFLSVK--PQVIESVLSEIKPKVSKGKIIVSVAAGKTLSSLESKLSPPTRVIRVMPNTPSVVGEGASVYAIGCH 136 (267)
T ss_pred HhhccceeEeec--chhHHHHhhcCccccccceEEEEEeecccHHHHHHhcCCCCceEEecCCChhhhhcCcEEEeeCCC
Confidence 889999999993 666777888877766777899999999999999998887889999999999988877774 46778
Q ss_pred CCHHHHHHHHHHHHHcCCeeE
Q 007805 464 TSAQVILDLMTVGKIIKKVPV 484 (589)
Q Consensus 464 t~~e~~~~~~~l~~~lG~~~v 484 (589)
...+..+.+.+++...|+..-
T Consensus 137 ~~~~D~~l~~~ll~~vG~~~e 157 (267)
T KOG3124|consen 137 ATNEDLELVEELLSAVGLCEE 157 (267)
T ss_pred cchhhHHHHHHHHHhcCccee
Confidence 888888999999999996543
No 233
>KOG2380 consensus Prephenate dehydrogenase (NADP+) [Amino acid transport and metabolism]
Probab=98.23 E-value=1.9e-05 Score=78.35 Aligned_cols=152 Identities=11% Similarity=0.013 Sum_probs=105.9
Q ss_pred cceEEEEcCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-c-CC
Q 007805 308 VRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-S-EF 385 (589)
Q Consensus 308 ~~kI~IIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~-~~ 385 (589)
-.+|||||.|.||.=+|..+.++|+.|+..||+. -+.+.+++. ....+++ + +-
T Consensus 52 tl~IaIIGfGnmGqflAetli~aGh~li~hsRsd--yssaa~~yg-----------------------~~~ft~lhdlce 106 (480)
T KOG2380|consen 52 TLVIAIIGFGNMGQFLAETLIDAGHGLICHSRSD--YSSAAEKYG-----------------------SAKFTLLHDLCE 106 (480)
T ss_pred ceEEEEEecCcHHHHHHHHHHhcCceeEecCcch--hHHHHHHhc-----------------------ccccccHHHHHh
Confidence 3689999999999999999999999999999986 222222111 1122233 2 23
Q ss_pred CCCCEEEEeccCChHHHHHHHHHHHHh-CCCCcEEEecCCCC--CHHHHhcccCCCCcEEEecCCCCCC------C-CCe
Q 007805 386 KDVDMVIEAVIESVPLKQKIFSELEKA-CPPHCILATNTSTI--DLNIVGEKTSSQDRIIGAHFFSPAH------V-MPL 455 (589)
Q Consensus 386 ~~aDlVIeavpe~~~~k~~v~~~l~~~-~~~~~ii~s~ts~~--~~~~~~~~~~~~~r~ig~h~~~p~~------~-~~l 455 (589)
+..|+|+.|+. ......+++..-.. ++.+++++..+|.- +.+.....++..-.++-.|++..|. . .|+
T Consensus 107 rhpDvvLlcts--ilsiekilatypfqrlrrgtlfvdvlSvKefek~lfekYLPkdfDIlctHpmfGPksvnh~wqglpf 184 (480)
T KOG2380|consen 107 RHPDVVLLCTS--ILSIEKILATYPFQRLRRGTLFVDVLSVKEFEKELFEKYLPKDFDILCTHPMFGPKSVNHEWQGLPF 184 (480)
T ss_pred cCCCEEEEEeh--hhhHHHHHHhcCchhhccceeEeeeeecchhHHHHHHHhCccccceEeecCCcCCCcCCCccccCce
Confidence 67899999995 55555666665554 77889998877753 3445556677667789999976664 1 133
Q ss_pred eeEe---cCCCCCHHHHHHHHHHHHHcCCeeEEE
Q 007805 456 LEIV---RTERTSAQVILDLMTVGKIIKKVPVVV 486 (589)
Q Consensus 456 veiv---~~~~t~~e~~~~~~~l~~~lG~~~v~v 486 (589)
|-+- ......+|.++.+.+++...|...|.+
T Consensus 185 VydkvRig~~~~r~ercE~fleIf~cegckmVem 218 (480)
T KOG2380|consen 185 VYDKVRIGYAASRPERCEFFLEIFACEGCKMVEM 218 (480)
T ss_pred EEEEeeccccccchHHHHHHHHHHHhcCCeEEEE
Confidence 3221 122345899999999999999988876
No 234
>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]
Probab=98.22 E-value=8.5e-05 Score=76.04 Aligned_cols=217 Identities=14% Similarity=0.067 Sum_probs=124.0
Q ss_pred ceEEEEcCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCccCCCCC
Q 007805 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKDV 388 (589)
Q Consensus 309 ~kI~IIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~a 388 (589)
+||+|+|+|.||+-++..|+++|++|+++-|++. +++..+ .|..-.............+.+.+....+
T Consensus 1 mkI~IlGaGAvG~l~g~~L~~~g~~V~~~~R~~~-~~~l~~-----------~GL~i~~~~~~~~~~~~~~~~~~~~~~~ 68 (307)
T COG1893 1 MKILILGAGAIGSLLGARLAKAGHDVTLLVRSRR-LEALKK-----------KGLRIEDEGGNFTTPVVAATDAEALGPA 68 (307)
T ss_pred CeEEEECCcHHHHHHHHHHHhCCCeEEEEecHHH-HHHHHh-----------CCeEEecCCCccccccccccChhhcCCC
Confidence 4899999999999999999999988999988875 444322 2211000000000112223333667799
Q ss_pred CEEEEeccCChHHHHHHHHHHHHhCCCCcEEEecCCCCCHHH-HhcccCCCCcEEEecCCCCCCCCCeeeEec-------
Q 007805 389 DMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNI-VGEKTSSQDRIIGAHFFSPAHVMPLLEIVR------- 460 (589)
Q Consensus 389 DlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~~-~~~~~~~~~r~ig~h~~~p~~~~~lveiv~------- 460 (589)
|+||.++- .-...+.++.+.++++++++|++.--++...+ +....+....+.|+-+.......+......
T Consensus 69 Dlviv~vK--a~q~~~al~~l~~~~~~~t~vl~lqNG~g~~e~l~~~~~~~~il~G~~~~~a~~~~~g~v~~~g~g~~~i 146 (307)
T COG1893 69 DLVIVTVK--AYQLEEALPSLAPLLGPNTVVLFLQNGLGHEEELRKILPKETVLGGVTTHGAVREGPGHVVHTGLGDTVI 146 (307)
T ss_pred CEEEEEec--cccHHHHHHHhhhcCCCCcEEEEEeCCCcHHHHHHHhCCcceEEEEEeeeeeEecCCceEEEecCCcEEE
Confidence 99999994 44456888999999999998887777766554 444444332344444332222222211111
Q ss_pred C--CCCCHHHHHHHHHHHHHcCCeeEEEcCCC------------------------Cccc-c----cccHHHHHHHHHHH
Q 007805 461 T--ERTSAQVILDLMTVGKIIKKVPVVVGNCT------------------------GFAV-N----RAFFPYSQSARLLV 509 (589)
Q Consensus 461 ~--~~t~~e~~~~~~~l~~~lG~~~v~v~d~~------------------------Gfi~-n----Ri~~~~~~Ea~~l~ 509 (589)
+ ..-.++..+.+.+.++..|....+..|.- |.+. | .++..++.|+....
T Consensus 147 g~~~~~~~~~~~~i~~~~~~a~~~~~~~~di~~~~w~Kl~~N~~inpltall~~~~g~l~~~~~~~~l~~~~~~E~~~v~ 226 (307)
T COG1893 147 GELRGGRDELVKALAELFKEAGLEVELHPDILAAIWRKLVVNAAINPLTALLDCNNGELLENPEARALIRALVAEVVAVA 226 (307)
T ss_pred ccCCCCchHHHHHHHHHHHhCCCCeEEcHHHHHHHHHHHHhhhccchhhhhhcCCchHHhcChhHHHHHHHHHHHHHHHH
Confidence 1 12233667777777777776665533321 1111 1 23445556777666
Q ss_pred Hc-CC--CHHHHHHHH-Hh--cCCCCcHHHHHHHhc
Q 007805 510 SL-GV--DVFRIDSAI-RS--FGLPIGPFQLLDLAG 539 (589)
Q Consensus 510 ~~-Gv--~~~~iD~~~-~~--~g~p~Gpf~~~D~~G 539 (589)
.. |+ +.+.+|.++ .. ...++.|-=+.|...
T Consensus 227 ~~~g~~~~~~~~~~v~~~~~~~~~~~~sSM~qDl~~ 262 (307)
T COG1893 227 RAEGVELPEEVVERVLAVIRATDAENYSSMLQDLEK 262 (307)
T ss_pred HhccCCCCHHHHHHHHHHHHhcccccCchHHHHHHc
Confidence 44 75 666677766 22 222445555555544
No 235
>COG0616 SppA Periplasmic serine proteases (ClpP class) [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=98.20 E-value=1.6e-05 Score=81.70 Aligned_cols=160 Identities=23% Similarity=0.324 Sum_probs=104.7
Q ss_pred cEEEEEeCCC-C--CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCCcCCCCchhhhhccCCCcccccchhHHHHH
Q 007805 14 GVAIITLINP-P--VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELV 90 (589)
Q Consensus 14 ~v~~i~l~~p-~--~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~ 90 (589)
.|++|.++.+ . .+.+..-..+.+.+.++.+..|+++++|+|.=. |.|+.... .....+.+
T Consensus 60 ~Iavi~~~G~I~~~~~~~~~~~~~~~~~~l~~~~~~~~vk~vvL~in----SPGG~v~a-------------s~~i~~~l 122 (317)
T COG0616 60 VIAVIHVEGAIVAGGGPLRFIGGDDIEEILRAARADPSVKAVVLRIN----SPGGSVVA-------------SELIARAL 122 (317)
T ss_pred EEEEEEeeeeeecCCCccccccHHHHHHHHHHHhcCCCCceEEEEEE----CcCCchhH-------------HHHHHHHH
Confidence 5888888655 1 122223346677788889999999999999633 12222111 11122333
Q ss_pred HHHHHhCCCcEEEEeCCcccchhhHHhhhcCEEEEeCCceEeccccccCCCCChhhhhhHhhhcC---------------
Q 007805 91 VNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVG--------------- 155 (589)
Q Consensus 91 ~~~l~~~~kp~iaav~G~a~GgG~~lala~D~~ia~~~a~~~~pe~~~Gl~p~~g~~~~l~~~~G--------------- 155 (589)
+++..-. ||++.|++.|..||..++++||.++|++.+..|---+..+. |.... +-...|
T Consensus 123 -~~l~~~~-PV~v~v~~~AASGGY~IA~aAd~I~a~p~si~GSIGVi~~~-~~~~~---l~~k~Gv~~~~~~ag~~k~~~ 196 (317)
T COG0616 123 -KRLRAKK-PVVVSVGGYAASGGYYIALAADKIVADPSSITGSIGVISGA-PNFEE---LLEKLGVEKEVITAGEYKDIL 196 (317)
T ss_pred -HHHhhcC-CEEEEECCeecchhhhhhccCCEEEecCCceeeeceeEEec-CCHHH---HHHhcCCceeeeecccccccc
Confidence 3344444 99999999999999999999999999999988765555442 32221 111111
Q ss_pred -----------------------------------HHHHHHHHHcCCCCCHHHHHHcCCcceecCchHHHHHHHHH
Q 007805 156 -----------------------------------LSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLW 196 (589)
Q Consensus 156 -----------------------------------~~~a~~l~ltg~~~~a~~A~~~Glv~~vv~~~~l~~~a~~~ 196 (589)
......-+.+|+.+++++|++.||||++-..++....+...
T Consensus 197 ~~~~~~t~e~~~~~q~~~~e~y~~F~~~V~~~R~~~~~~~~~~a~g~v~~g~~A~~~gLVDelg~~~~av~~~~~~ 272 (317)
T COG0616 197 SPFRPLTEEEREILQKEIDETYDEFVDKVAEGRGLSDEAVDKLATGRVWTGQQALELGLVDELGGLDDAVKDAAEL 272 (317)
T ss_pred CcccCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCChhHHHHHhccceecHHHhhhcCCchhcCCHHHHHHHHHHh
Confidence 12224567799999999999999999998766554444443
No 236
>PRK15076 alpha-galactosidase; Provisional
Probab=98.19 E-value=6.5e-06 Score=88.10 Aligned_cols=77 Identities=21% Similarity=0.264 Sum_probs=55.6
Q ss_pred cceEEEEcCCCCcHHHHH--HHH----hCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCC
Q 007805 308 VRKVAVIGGGLMGSGIAT--AHI----LNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLD 381 (589)
Q Consensus 308 ~~kI~IIG~G~mG~~iA~--~l~----~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~ 381 (589)
|.||+|||+|.||.+.+. .++ ..|.+|+++|+++++++.+...++..+... + ...+++.++|
T Consensus 1 ~~KIaIIGaGsvg~~~~~~~~i~~~~~l~~~evvLvDid~er~~~~~~l~~~~~~~~---~---------~~~~i~~ttD 68 (431)
T PRK15076 1 MPKITFIGAGSTVFTKNLLGDILSVPALRDAEIALMDIDPERLEESEIVARKLAESL---G---------ASAKITATTD 68 (431)
T ss_pred CcEEEEECCCHHHhHHHHHHHHhhCccCCCCEEEEECCCHHHHHHHHHHHHHHHHhc---C---------CCeEEEEECC
Confidence 368999999999966655 443 246799999999999887655544443322 1 0135777888
Q ss_pred c-cCCCCCCEEEEecc
Q 007805 382 Y-SEFKDVDMVIEAVI 396 (589)
Q Consensus 382 ~-~~~~~aDlVIeavp 396 (589)
+ +++++||+||+++-
T Consensus 69 ~~eal~dADfVv~ti~ 84 (431)
T PRK15076 69 RREALQGADYVINAIQ 84 (431)
T ss_pred HHHHhCCCCEEeEeee
Confidence 5 88999999999883
No 237
>PRK12553 ATP-dependent Clp protease proteolytic subunit; Reviewed
Probab=98.19 E-value=1.3e-05 Score=77.11 Aligned_cols=138 Identities=22% Similarity=0.219 Sum_probs=98.3
Q ss_pred CCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCCcCCCCchhhhhccCCCcccccchhHHHHHHHHHHhCCCcEEEEe
Q 007805 26 NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAV 105 (589)
Q Consensus 26 N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kp~iaav 105 (589)
..++..+..++...|..++..+..+.|.|.=. |.|+++.. ...++ +.|..++.|+++.+
T Consensus 42 g~I~~~~~~~i~~~L~~l~~~~~~~~I~l~IN----SpGG~v~~----------------g~~I~-d~i~~~~~~v~t~~ 100 (207)
T PRK12553 42 GQVDDASANDVMAQLLVLESIDPDRDITLYIN----SPGGSVTA----------------GDAIY-DTIQFIRPDVQTVC 100 (207)
T ss_pred ceECHHHHHHHHHHHHHHHhCCCCCCEEEEEe----CCCCcHHH----------------HHHHH-HHHHhcCCCcEEEE
Confidence 45889999999999999987654444444211 22333221 22455 67888899999999
Q ss_pred CCcccchhhHHhhhcC--EEEEeCCceEecccccc-CCCCChhhh------------------hhHhhhcC--HHHHHHH
Q 007805 106 EGLALGGGLELAMGCH--ARIAAPKTQLGLPELTL-GVIPGFGGT------------------QRLPRLVG--LSKAIEM 162 (589)
Q Consensus 106 ~G~a~GgG~~lala~D--~~ia~~~a~~~~pe~~~-Gl~p~~g~~------------------~~l~~~~G--~~~a~~l 162 (589)
.|.|.+.|.-++++|| .|++.++++|.+..... |- ..|-. ..+.+.-| .....++
T Consensus 101 ~G~aaSaa~lI~~ag~~~~R~~~p~s~imiH~p~~~~~--~~G~a~d~~~~~~~l~~~~~~~~~~ya~~tg~~~e~i~~~ 178 (207)
T PRK12553 101 TGQAASAGAVLLAAGTPGKRFALPNARILIHQPSLGGG--IRGQASDLEIQAREILRMRERLERILAEHTGQSVEKIRKD 178 (207)
T ss_pred EeehhhHHHHHHHcCCcCcEEECCCchhhhcCccccCC--CccCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHH
Confidence 9999999999999999 59999999988876543 21 11211 11223333 3556677
Q ss_pred HHcCCCCCHHHHHHcCCcceecCc
Q 007805 163 MLLSKSITSEEGWKLGLIDAVVTS 186 (589)
Q Consensus 163 ~ltg~~~~a~~A~~~Glv~~vv~~ 186 (589)
+-.+..++|+||+++||||+|++.
T Consensus 179 ~~~~~~lta~EA~e~GliD~I~~~ 202 (207)
T PRK12553 179 TDRDKWLTAEEAKDYGLVDQIITS 202 (207)
T ss_pred HhcCccccHHHHHHcCCccEEcCc
Confidence 778999999999999999999854
No 238
>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=98.18 E-value=5.8e-06 Score=84.76 Aligned_cols=98 Identities=23% Similarity=0.296 Sum_probs=65.4
Q ss_pred ceEEEEcCCCCcHHHHHHHHhCCC--eEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCccCCC
Q 007805 309 RKVAVIGGGLMGSGIATAHILNNI--YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFK 386 (589)
Q Consensus 309 ~kI~IIG~G~mG~~iA~~l~~~G~--~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~ 386 (589)
.||+|||+|.+|+++|..++..|. ++.++|++++.++.....+..... +. ....+..+.+++.++
T Consensus 4 ~Ki~IiGaG~VG~~~a~~l~~~~~~~el~LiD~~~~~~~g~a~Dl~~~~~-~~------------~~~~v~~~~dy~~~~ 70 (312)
T cd05293 4 NKVTVVGVGQVGMACAISILAKGLADELVLVDVVEDKLKGEAMDLQHGSA-FL------------KNPKIEADKDYSVTA 70 (312)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCccHHHHHHHHHHHhhc-cC------------CCCEEEECCCHHHhC
Confidence 489999999999999999998876 799999998765543333322110 00 012455567888899
Q ss_pred CCCEEEEecc--C------------ChHHHHHHHHHHHHhCCCCcEEE
Q 007805 387 DVDMVIEAVI--E------------SVPLKQKIFSELEKACPPHCILA 420 (589)
Q Consensus 387 ~aDlVIeavp--e------------~~~~k~~v~~~l~~~~~~~~ii~ 420 (589)
+||+||.+.- . +..+.+++.+++.++.+. .+++
T Consensus 71 ~adivvitaG~~~k~g~~R~dll~~N~~i~~~~~~~i~~~~p~-~~vi 117 (312)
T cd05293 71 NSKVVIVTAGARQNEGESRLDLVQRNVDIFKGIIPKLVKYSPN-AILL 117 (312)
T ss_pred CCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCC-cEEE
Confidence 9999998652 2 222344555667777644 4444
No 239
>PRK11778 putative inner membrane peptidase; Provisional
Probab=98.17 E-value=2.7e-05 Score=79.36 Aligned_cols=160 Identities=18% Similarity=0.250 Sum_probs=99.3
Q ss_pred cCcEEEEEeCCC-CCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCCcCCCCchhhhhccCCCcccccchhHHHHH
Q 007805 12 NDGVAIITLINP-PVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELV 90 (589)
Q Consensus 12 ~~~v~~i~l~~p-~~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~ 90 (589)
.+.|++|.++.+ ..+. ...+.+++...++.+..+ .+|||.-.. .|+..... ......+
T Consensus 89 ~~~v~VI~~~G~I~~~~-~~~l~e~i~a~l~~A~~~---~aVvLridS----pGG~v~~s-------------~~a~~~l 147 (330)
T PRK11778 89 KPRLFVLDFKGDIDASE-VESLREEITAILAVAKPG---DEVLLRLES----PGGVVHGY-------------GLAASQL 147 (330)
T ss_pred CCeEEEEEEEEEECCCc-chhhHHHHHHHHHhccCC---CeEEEEEeC----CCCchhHH-------------HHHHHHH
Confidence 357999999876 2211 123456666666555533 467776432 12222110 0011223
Q ss_pred HHHHHhCCCcEEEEeCCcccchhhHHhhhcCEEEEeCCceEeccccccCCCCChhhhh----------------------
Q 007805 91 VNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQ---------------------- 148 (589)
Q Consensus 91 ~~~l~~~~kp~iaav~G~a~GgG~~lala~D~~ia~~~a~~~~pe~~~Gl~p~~g~~~---------------------- 148 (589)
.+++...||+++.+++.|..||+.++++||.++|.+.+.++..-+... .|......
T Consensus 148 -~~lr~~~kpVva~v~~~AASggY~iAsaAD~I~A~P~a~vGSIGVi~~-~~~~~~lLeKlGI~~evi~aG~yK~a~~pf 225 (330)
T PRK11778 148 -QRLRDAGIPLTVAVDKVAASGGYMMACVADKIIAAPFAIVGSIGVVAQ-IPNFHRLLKKHDIDVELHTAGEYKRTLTLF 225 (330)
T ss_pred -HHHHhcCCCEEEEECCchhhHHHHHHHhCCEEEECCCCeEEeeeeeee-ccCHHHHHHHCCCceEEEEecCccCCCCCC
Confidence 457788999999999999999999999999999999987765444322 12221110
Q ss_pred ---------hHhh-----------hc--CH-HHHHHHHHcCCCCCHHHHHHcCCcceecCchHHHHHHH
Q 007805 149 ---------RLPR-----------LV--GL-SKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSR 194 (589)
Q Consensus 149 ---------~l~~-----------~~--G~-~~a~~l~ltg~~~~a~~A~~~Glv~~vv~~~~l~~~a~ 194 (589)
.+.. .+ ++ ....+-+.+|+.+++++|++.||||++...+++...+.
T Consensus 226 ~~~see~Re~~q~~Ld~~y~~F~~~Va~~R~~l~~~~va~G~v~~g~~Al~~GLVD~Ig~~dd~i~~~~ 294 (330)
T PRK11778 226 GENTEEGREKFREELEETHQLFKDFVQRYRPQLDIDKVATGEHWYGQQALELGLVDEIQTSDDYLLELM 294 (330)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCcCCHHHHHhCCCcCHHHHHHCCCCCcCCCHHHHHHHHH
Confidence 0000 11 11 11234567899999999999999999998777754433
No 240
>TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase. This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli.
Probab=98.13 E-value=1.3e-05 Score=88.20 Aligned_cols=130 Identities=14% Similarity=0.013 Sum_probs=84.2
Q ss_pred ceEEEEcCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cCCCC
Q 007805 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD 387 (589)
Q Consensus 309 ~kI~IIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~ 387 (589)
++|+|||+|.||..+|..+...|++|+.||+.... +.+ .+.| +...+++ +.+++
T Consensus 139 ktvgIiG~G~IG~~vA~~l~~fG~~V~~~d~~~~~-~~~-----------~~~g-------------~~~~~~l~ell~~ 193 (525)
T TIGR01327 139 KTLGVIGLGRIGSIVAKRAKAFGMKVLAYDPYISP-ERA-----------EQLG-------------VELVDDLDELLAR 193 (525)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCEEEEECCCCCh-hHH-----------HhcC-------------CEEcCCHHHHHhh
Confidence 68999999999999999999999999999985321 111 0011 2223345 66789
Q ss_pred CCEEEEeccCChHHHHHHHHHHHHhCCCCcEEEecCCCCC--HHHHhcccCC-CCcEEEecC--CC-----CCCCCCeee
Q 007805 388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTID--LNIVGEKTSS-QDRIIGAHF--FS-----PAHVMPLLE 457 (589)
Q Consensus 388 aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~--~~~~~~~~~~-~~r~ig~h~--~~-----p~~~~~lve 457 (589)
||+|+.++|...+.+.-+=++..+.++++++++..+-+-. -..+.+.+.. .-...++-- .. |.+..+.+.
T Consensus 194 aDvV~l~lPlt~~T~~li~~~~l~~mk~ga~lIN~aRG~~vde~aL~~aL~~g~i~gAaLDVf~~EP~~~~pL~~~~nvi 273 (525)
T TIGR01327 194 ADFITVHTPLTPETRGLIGAEELAKMKKGVIIVNCARGGIIDEAALYEALEEGHVRAAALDVFEKEPPTDNPLFDLDNVI 273 (525)
T ss_pred CCEEEEccCCChhhccCcCHHHHhcCCCCeEEEEcCCCceeCHHHHHHHHHcCCeeEEEEecCCCCCCCCChhhcCCCeE
Confidence 9999999998777655444566778999998876555433 3455555442 222233332 22 234445666
Q ss_pred EecCCC
Q 007805 458 IVRTER 463 (589)
Q Consensus 458 iv~~~~ 463 (589)
++|+-.
T Consensus 274 ~TPHia 279 (525)
T TIGR01327 274 ATPHLG 279 (525)
T ss_pred ECCCcc
Confidence 777643
No 241
>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=98.10 E-value=5.6e-06 Score=85.01 Aligned_cols=96 Identities=24% Similarity=0.338 Sum_probs=65.2
Q ss_pred eEEEEcCCCCcHHHHHHHHhCC--CeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCccCCCC
Q 007805 310 KVAVIGGGLMGSGIATAHILNN--IYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKD 387 (589)
Q Consensus 310 kI~IIG~G~mG~~iA~~l~~~G--~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~ 387 (589)
||+|||+|.+|.++|..++..| .+|.++|+++++.+.....+... ..... .....+++++++++
T Consensus 2 kI~IIGaG~VG~~~a~~l~~~g~~~ev~l~D~~~~~~~g~a~dl~~~-------~~~~~-------~~~i~~~d~~~l~~ 67 (308)
T cd05292 2 KVAIVGAGFVGSTTAYALLLRGLASEIVLVDINKAKAEGEAMDLAHG-------TPFVK-------PVRIYAGDYADCKG 67 (308)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCCCEEEEEECCchhhhhHHHHHHcc-------ccccC-------CeEEeeCCHHHhCC
Confidence 7999999999999999999999 58999999988765321111110 00000 01122456788999
Q ss_pred CCEEEEeccC--------------ChHHHHHHHHHHHHhCCCCcEE
Q 007805 388 VDMVIEAVIE--------------SVPLKQKIFSELEKACPPHCIL 419 (589)
Q Consensus 388 aDlVIeavpe--------------~~~~k~~v~~~l~~~~~~~~ii 419 (589)
||+||.+++. +..+.+++.++|.++.+.+.++
T Consensus 68 aDiViita~~~~~~~~~r~dl~~~n~~i~~~~~~~l~~~~~~giii 113 (308)
T cd05292 68 ADVVVITAGANQKPGETRLDLLKRNVAIFKEIIPQILKYAPDAILL 113 (308)
T ss_pred CCEEEEccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEE
Confidence 9999999975 3334556667788877554444
No 242
>PRK14512 ATP-dependent Clp protease proteolytic subunit; Provisional
Probab=98.08 E-value=3.7e-05 Score=73.22 Aligned_cols=143 Identities=20% Similarity=0.174 Sum_probs=95.1
Q ss_pred CCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCCcCCCCchhhhhccCCCcccccchhHHHHHHHHHHhCCCcEEEEeC
Q 007805 27 ALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVE 106 (589)
Q Consensus 27 ~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kp~iaav~ 106 (589)
.++..+...+.+.|..++..+..+.|.|.=. |.|+++.. ...++ +.|...+.||++.+.
T Consensus 31 ~I~~~~~~~i~~~L~~l~~~~~~~~I~l~IN----SpGG~v~a----------------g~aI~-d~i~~~~~~V~t~v~ 89 (197)
T PRK14512 31 EINKDLSELFQEKILLLEALDSKKPIFVYID----SEGGDIDA----------------GFAIF-NMIRFVKPKVFTIGV 89 (197)
T ss_pred EEcHHHHHHHHHHHHHHHhcCCCCCEEEEEE----CCCCCHHH----------------HHHHH-HHHHhCCCCEEEEEE
Confidence 4778899999999988876333344444211 22333321 22455 668889999999999
Q ss_pred CcccchhhHHhhhcCE--EEEeCCceEeccccccCCCCChhhh---------------hhHhhhcC--HHHHHHHHHcCC
Q 007805 107 GLALGGGLELAMGCHA--RIAAPKTQLGLPELTLGVIPGFGGT---------------QRLPRLVG--LSKAIEMMLLSK 167 (589)
Q Consensus 107 G~a~GgG~~lala~D~--~ia~~~a~~~~pe~~~Gl~p~~g~~---------------~~l~~~~G--~~~a~~l~ltg~ 167 (589)
|.|.+.|.-++++||- |++.++++|.+-...-++.....-. ..+...-| .....+++-...
T Consensus 90 G~AaSaaslIl~ag~~~~R~~~p~s~imiHqP~~~~~G~a~di~~~a~~l~~~~~~i~~~~a~~tg~~~~~i~~~~~~d~ 169 (197)
T PRK14512 90 GLVASAAALIFLAAKKESRFSLPNARYLLHQPLSGFKGVATDIEIYANELNKVKSELNDIIAKETGQELDKVEKDTDRDF 169 (197)
T ss_pred eeeHhHHHHHHhcCCcCceeECCCCcEEEEcCccccccCHHHHHHHHHHHHHHHHHHHHHHHHHhCcCHHHHHHhhhcCc
Confidence 9999999999999985 8999998886654432221111100 01122223 344556666778
Q ss_pred CCCHHHHHHcCCcceecCc-hHHH
Q 007805 168 SITSEEGWKLGLIDAVVTS-EELL 190 (589)
Q Consensus 168 ~~~a~~A~~~Glv~~vv~~-~~l~ 190 (589)
.++|+||+++||||+|++. +++.
T Consensus 170 ~lta~EA~~yGliD~I~~~~~~l~ 193 (197)
T PRK14512 170 WLDSSSAVKYGLVFEVVETRLELE 193 (197)
T ss_pred ccCHHHHHHcCCccEeecCcHHhH
Confidence 8999999999999999964 4443
No 243
>PLN02602 lactate dehydrogenase
Probab=98.07 E-value=1e-05 Score=84.03 Aligned_cols=96 Identities=25% Similarity=0.338 Sum_probs=64.2
Q ss_pred ceEEEEcCCCCcHHHHHHHHhCCC--eEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCccCCC
Q 007805 309 RKVAVIGGGLMGSGIATAHILNNI--YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFK 386 (589)
Q Consensus 309 ~kI~IIG~G~mG~~iA~~l~~~G~--~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~ 386 (589)
+||+|||+|.+|+++|..++..|. ++.++|++++.++...-.+..... +. + ...+....+++.++
T Consensus 38 ~KI~IIGaG~VG~~~a~~l~~~~l~~el~LiDi~~~~~~g~a~DL~~~~~-~~--~----------~~~i~~~~dy~~~~ 104 (350)
T PLN02602 38 TKVSVVGVGNVGMAIAQTILTQDLADELALVDVNPDKLRGEMLDLQHAAA-FL--P----------RTKILASTDYAVTA 104 (350)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCCchhhHHHHHHHhhhh-cC--C----------CCEEEeCCCHHHhC
Confidence 599999999999999999998876 799999998776543333332110 00 0 01334445778899
Q ss_pred CCCEEEEeccC--------------ChHHHHHHHHHHHHhCCCCc
Q 007805 387 DVDMVIEAVIE--------------SVPLKQKIFSELEKACPPHC 417 (589)
Q Consensus 387 ~aDlVIeavpe--------------~~~~k~~v~~~l~~~~~~~~ 417 (589)
+||+||.+.-. +..+.+++..++.+++++..
T Consensus 105 daDiVVitAG~~~k~g~tR~dll~~N~~I~~~i~~~I~~~~p~~i 149 (350)
T PLN02602 105 GSDLCIVTAGARQIPGESRLNLLQRNVALFRKIIPELAKYSPDTI 149 (350)
T ss_pred CCCEEEECCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeE
Confidence 99999998521 22344455666777765543
No 244
>COG0111 SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism]
Probab=98.07 E-value=3.4e-05 Score=79.25 Aligned_cols=128 Identities=16% Similarity=0.121 Sum_probs=84.0
Q ss_pred ceEEEEcCCCCcHHHHHHHHhCCCeEEEEeC-ChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cCCC
Q 007805 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEV-NSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFK 386 (589)
Q Consensus 309 ~kI~IIG~G~mG~~iA~~l~~~G~~V~~~d~-~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~ 386 (589)
++|||||+|.+|+.+|..+...|++|++||+ .+...+.. .......++ +.++
T Consensus 143 kTvGIiG~G~IG~~va~~l~afgm~v~~~d~~~~~~~~~~--------------------------~~~~~~~~Ld~lL~ 196 (324)
T COG0111 143 KTVGIIGLGRIGRAVAKRLKAFGMKVIGYDPYSPRERAGV--------------------------DGVVGVDSLDELLA 196 (324)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCeEEEECCCCchhhhcc--------------------------ccceecccHHHHHh
Confidence 6899999999999999999999999999999 43322210 112223445 5689
Q ss_pred CCCEEEEeccCChHHHHHHHHHHHHhCCCCcEEEecCCC--CCHHHHhcccCCC-CcEEEecCC--------CCCCCCCe
Q 007805 387 DVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTST--IDLNIVGEKTSSQ-DRIIGAHFF--------SPAHVMPL 455 (589)
Q Consensus 387 ~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~--~~~~~~~~~~~~~-~r~ig~h~~--------~p~~~~~l 455 (589)
.||+|+..+|...+.+.=+=++....++++++++..+-+ +.-..+.+.+... -+-.++--| .|.+..+.
T Consensus 197 ~sDiv~lh~PlT~eT~g~i~~~~~a~MK~gailIN~aRG~vVde~aL~~AL~~G~i~gA~lDVf~~EPl~~~~pL~~~pn 276 (324)
T COG0111 197 EADILTLHLPLTPETRGLINAEELAKMKPGAILINAARGGVVDEDALLAALDSGKIAGAALDVFEEEPLPADSPLWDLPN 276 (324)
T ss_pred hCCEEEEcCCCCcchhcccCHHHHhhCCCCeEEEECCCcceecHHHHHHHHHcCCcceEEecCCCCCCCCCCChhhcCCC
Confidence 999999999988886555556677789999977543333 3334455554432 122233222 23345566
Q ss_pred eeEecCC
Q 007805 456 LEIVRTE 462 (589)
Q Consensus 456 veiv~~~ 462 (589)
|.++|+-
T Consensus 277 V~~TPHi 283 (324)
T COG0111 277 VILTPHI 283 (324)
T ss_pred eEECCcc
Confidence 6777753
No 245
>cd00300 LDH_like L-lactate dehydrogenase-like enzymes. Members of this subfamily are tetrameric NAD-dependent 2-hydroxycarboxylate dehydrogenases including LDHs, L-2-hydroxyisocaproate dehydrogenases (L-HicDH), and LDH-like malate dehydrogenases (MDH). Dehydrogenases catalyze the conversion of carbonyl compounds to alcohols or amino acids. LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. L-HicDH catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of prot
Probab=98.05 E-value=8.6e-06 Score=83.31 Aligned_cols=98 Identities=23% Similarity=0.323 Sum_probs=68.0
Q ss_pred EEEEcCCCCcHHHHHHHHhCC--CeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCccCCCCC
Q 007805 311 VAVIGGGLMGSGIATAHILNN--IYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKDV 388 (589)
Q Consensus 311 I~IIG~G~mG~~iA~~l~~~G--~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~a 388 (589)
|+|||+|.+|+++|..++..| .+++++|+++++++.....+....... . ...+..+++++++++|
T Consensus 1 i~iiGaG~VG~~~a~~l~~~~~~~el~l~D~~~~~~~g~~~DL~~~~~~~---~----------~~~i~~~~~~~~l~~a 67 (300)
T cd00300 1 ITIIGAGNVGAAVAFALIAKGLASELVLVDVNEEKAKGDALDLSHASAFL---A----------TGTIVRGGDYADAADA 67 (300)
T ss_pred CEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCccHHHHHHHhHHHhcccc---C----------CCeEEECCCHHHhCCC
Confidence 689999999999999999988 589999999988765444433322110 0 0133444567899999
Q ss_pred CEEEEeccC--------------ChHHHHHHHHHHHHhCCCCcEEEec
Q 007805 389 DMVIEAVIE--------------SVPLKQKIFSELEKACPPHCILATN 422 (589)
Q Consensus 389 DlVIeavpe--------------~~~~k~~v~~~l~~~~~~~~ii~s~ 422 (589)
|+||.++.. +..+.+++..++.+++ |+++++..
T Consensus 68 DiVIitag~p~~~~~~R~~l~~~n~~i~~~~~~~i~~~~-p~~~viv~ 114 (300)
T cd00300 68 DIVVITAGAPRKPGETRLDLINRNAPILRSVITNLKKYG-PDAIILVV 114 (300)
T ss_pred CEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCeEEEEc
Confidence 999998852 3334556667788888 55555433
No 246
>CHL00028 clpP ATP-dependent Clp protease proteolytic subunit
Probab=98.04 E-value=7.8e-05 Score=71.07 Aligned_cols=136 Identities=18% Similarity=0.177 Sum_probs=97.5
Q ss_pred CCCCHHHHHHHHHHHHHHhcCCCceEEEE--EcCCCCCcCCCCchhhhhccCCCcccccchhHHHHHHHHHHhCCCcEEE
Q 007805 26 NALAIPIVAGLKDKFEEATSRDDVKAIVL--TGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVA 103 (589)
Q Consensus 26 N~l~~~~~~~l~~~l~~~~~~~~v~~vvl--~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kp~ia 103 (589)
..++.++..++...+-.++.++..+-|.+ .+.| +|+.. ...++ +.+...+.||..
T Consensus 37 ~~i~~~~a~~ii~~ll~L~~~~~~~~I~l~INSpG------G~v~~----------------g~aIy-d~m~~~~~~V~T 93 (200)
T CHL00028 37 QEVDDEIANQLIGLMVYLSIEDDTKDLYLFINSPG------GSVIS----------------GLAIY-DTMQFVKPDVHT 93 (200)
T ss_pred CeecHHHHHHHHHHHHHHhccCCCCCEEEEEeCCC------cchhh----------------HHHHH-HHHHhcCCCEEE
Confidence 34899999999999999986544444443 3433 33211 23555 678899999999
Q ss_pred EeCCcccchhhHHhhhcC--EEEEeCCceEeccccccCCCCChhh-h-----------------hhHhhhcC--HHHHHH
Q 007805 104 AVEGLALGGGLELAMGCH--ARIAAPKTQLGLPELTLGVIPGFGG-T-----------------QRLPRLVG--LSKAIE 161 (589)
Q Consensus 104 av~G~a~GgG~~lala~D--~~ia~~~a~~~~pe~~~Gl~p~~g~-~-----------------~~l~~~~G--~~~a~~ 161 (589)
.+-|.|.+.|.-|++++| -|++.++++|.+-...-|.. .|- + ..+...-| .....+
T Consensus 94 v~~G~AaS~aslIl~aG~kg~R~~~p~s~imiHqp~~~~~--~G~a~di~~~a~~l~~~~~~~~~~ya~~Tg~~~e~i~~ 171 (200)
T CHL00028 94 ICLGLAASMASFILAGGEITKRLAFPHARVMIHQPASSFY--EGQASEFVLEAEELLKLRETITRVYAQRTGKPLWVISE 171 (200)
T ss_pred EEEEehHHHHHHHHhCCCCCCEEecCCCeEEEecCccCcC--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHCcCHHHHHH
Confidence 999999999999999999 69999999998877654421 121 1 11222223 344566
Q ss_pred HHHcCCCCCHHHHHHcCCcceecCc
Q 007805 162 MMLLSKSITSEEGWKLGLIDAVVTS 186 (589)
Q Consensus 162 l~ltg~~~~a~~A~~~Glv~~vv~~ 186 (589)
++-....++|+||+++||||+|+.+
T Consensus 172 ~~~r~~~lta~EA~eyGliD~I~~~ 196 (200)
T CHL00028 172 DMERDVFMSATEAKAYGIVDLVAVN 196 (200)
T ss_pred HhhcCccCCHHHHHHcCCCcEEeec
Confidence 7777888999999999999999854
No 247
>PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=98.03 E-value=2.6e-05 Score=85.92 Aligned_cols=129 Identities=14% Similarity=0.086 Sum_probs=84.5
Q ss_pred ceEEEEcCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cCCCC
Q 007805 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD 387 (589)
Q Consensus 309 ~kI~IIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~ 387 (589)
++|+|||+|.||..+|..+...|++|++||++... +.. ...| +... ++ +.+++
T Consensus 141 ktvgIiG~G~IG~~vA~~l~~fG~~V~~~d~~~~~-~~~-----------~~~g-------------~~~~-~l~ell~~ 194 (526)
T PRK13581 141 KTLGIIGLGRIGSEVAKRAKAFGMKVIAYDPYISP-ERA-----------AQLG-------------VELV-SLDELLAR 194 (526)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCEEEEECCCCCh-hHH-----------HhcC-------------CEEE-cHHHHHhh
Confidence 68999999999999999999999999999986431 111 0111 1222 34 66799
Q ss_pred CCEEEEeccCChHHHHHHHHHHHHhCCCCcEEEecCCCCC--HHHHhcccCC-CCcEEEecCC--C-----CCCCCCeee
Q 007805 388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTID--LNIVGEKTSS-QDRIIGAHFF--S-----PAHVMPLLE 457 (589)
Q Consensus 388 aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~--~~~~~~~~~~-~~r~ig~h~~--~-----p~~~~~lve 457 (589)
||+|+.++|-..+.+.-+-++..+.++++++++..+-+-. -..+.+.+.. .-.-.++.-| . |.+..+.+.
T Consensus 195 aDiV~l~lP~t~~t~~li~~~~l~~mk~ga~lIN~aRG~~vde~aL~~aL~~g~i~gAaLDVf~~EP~~~~pL~~~~nvi 274 (526)
T PRK13581 195 ADFITLHTPLTPETRGLIGAEELAKMKPGVRIINCARGGIIDEAALAEALKSGKVAGAALDVFEKEPPTDSPLFELPNVV 274 (526)
T ss_pred CCEEEEccCCChHhhcCcCHHHHhcCCCCeEEEECCCCceeCHHHHHHHHhcCCeeEEEEecCCCCCCCCchhhcCCCee
Confidence 9999999998777655554677888999998876555433 3345555432 2222333322 2 334446666
Q ss_pred EecCCC
Q 007805 458 IVRTER 463 (589)
Q Consensus 458 iv~~~~ 463 (589)
++|+-.
T Consensus 275 lTPHia 280 (526)
T PRK13581 275 VTPHLG 280 (526)
T ss_pred EcCccc
Confidence 777643
No 248
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=98.03 E-value=2e-05 Score=71.91 Aligned_cols=113 Identities=17% Similarity=0.157 Sum_probs=71.9
Q ss_pred EEEEcCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCC-CCHHHHHHHhhcccccCCc-cCCCCC
Q 007805 311 VAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGK-LTQDKANNALKMLKGVLDY-SEFKDV 388 (589)
Q Consensus 311 I~IIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~-~~~~~~~~~~~~i~~~~~~-~~~~~a 388 (589)
|+|+|+|.||.-+|..|.+.|++|+++++++ .++...+ .|. +.....+..........+. +..+.+
T Consensus 1 I~I~G~GaiG~~~a~~L~~~g~~V~l~~r~~-~~~~~~~-----------~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 68 (151)
T PF02558_consen 1 ILIIGAGAIGSLYAARLAQAGHDVTLVSRSP-RLEAIKE-----------QGLTITGPDGDETVQPPIVISAPSADAGPY 68 (151)
T ss_dssp EEEESTSHHHHHHHHHHHHTTCEEEEEESHH-HHHHHHH-----------HCEEEEETTEEEEEEEEEEESSHGHHHSTE
T ss_pred CEEECcCHHHHHHHHHHHHCCCceEEEEccc-cHHhhhh-----------eeEEEEecccceecccccccCcchhccCCC
Confidence 7899999999999999999999999999998 6555211 110 0000000000000011111 245789
Q ss_pred CEEEEeccCChHHHHHHHHHHHHhCCCCcEEEecCCCCCHH-HHhcccCC
Q 007805 389 DMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLN-IVGEKTSS 437 (589)
Q Consensus 389 DlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~-~~~~~~~~ 437 (589)
|+||.|+. ..-..+++..+.+++.+++.|++.-.++... .+.+..+.
T Consensus 69 D~viv~vK--a~~~~~~l~~l~~~~~~~t~iv~~qNG~g~~~~l~~~~~~ 116 (151)
T PF02558_consen 69 DLVIVAVK--AYQLEQALQSLKPYLDPNTTIVSLQNGMGNEEVLAEYFPR 116 (151)
T ss_dssp SEEEE-SS--GGGHHHHHHHHCTGEETTEEEEEESSSSSHHHHHHCHSTG
T ss_pred cEEEEEec--ccchHHHHHHHhhccCCCcEEEEEeCCCCcHHHHHHHcCC
Confidence 99999995 3334578888999999998887777777754 44444433
No 249
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=98.03 E-value=3.1e-06 Score=79.70 Aligned_cols=103 Identities=14% Similarity=0.084 Sum_probs=71.2
Q ss_pred ceEEEEcCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cCCCC
Q 007805 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD 387 (589)
Q Consensus 309 ~kI~IIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~ 387 (589)
++|+|||.|.+|..+|..+...|.+|+.||++........ . ... ...++ +.++.
T Consensus 37 ~tvgIiG~G~IG~~vA~~l~~fG~~V~~~d~~~~~~~~~~-----------~-------------~~~-~~~~l~ell~~ 91 (178)
T PF02826_consen 37 KTVGIIGYGRIGRAVARRLKAFGMRVIGYDRSPKPEEGAD-----------E-------------FGV-EYVSLDELLAQ 91 (178)
T ss_dssp SEEEEESTSHHHHHHHHHHHHTT-EEEEEESSCHHHHHHH-----------H-------------TTE-EESSHHHHHHH
T ss_pred CEEEEEEEcCCcCeEeeeeecCCceeEEecccCChhhhcc-----------c-------------ccc-eeeehhhhcch
Confidence 7899999999999999999999999999999987644210 0 011 22344 56789
Q ss_pred CCEEEEeccCChHHHHHHHHHHHHhCCCCcEEEecCCCC--CHHHHhcccC
Q 007805 388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTI--DLNIVGEKTS 436 (589)
Q Consensus 388 aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~--~~~~~~~~~~ 436 (589)
||+|+.++|-..+.+.-+=++....++++++++..+-+- .-+.+.+.+.
T Consensus 92 aDiv~~~~plt~~T~~li~~~~l~~mk~ga~lvN~aRG~~vde~aL~~aL~ 142 (178)
T PF02826_consen 92 ADIVSLHLPLTPETRGLINAEFLAKMKPGAVLVNVARGELVDEDALLDALE 142 (178)
T ss_dssp -SEEEE-SSSSTTTTTSBSHHHHHTSTTTEEEEESSSGGGB-HHHHHHHHH
T ss_pred hhhhhhhhccccccceeeeeeeeeccccceEEEeccchhhhhhhHHHHHHh
Confidence 999999999766554444456677899999887665553 3345555554
No 250
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=98.02 E-value=2.9e-05 Score=78.67 Aligned_cols=89 Identities=20% Similarity=0.247 Sum_probs=61.8
Q ss_pred ceEEEEcCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cCCCC
Q 007805 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD 387 (589)
Q Consensus 309 ~kI~IIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~ 387 (589)
++|+|||+|.||.++|..|...|.+|+++++++++.+.+. +.|. . .+. ..++ +.+++
T Consensus 152 k~v~IiG~G~iG~avA~~L~~~G~~V~v~~R~~~~~~~~~-----------~~g~-~---------~~~-~~~l~~~l~~ 209 (287)
T TIGR02853 152 SNVMVLGFGRTGMTIARTFSALGARVFVGARSSADLARIT-----------EMGL-I---------PFP-LNKLEEKVAE 209 (287)
T ss_pred CEEEEEcChHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH-----------HCCC-e---------eec-HHHHHHHhcc
Confidence 6899999999999999999999999999999987654431 1111 0 000 1122 45789
Q ss_pred CCEEEEeccCChHHHHHHHHHHHHhCCCCcEEEecCC
Q 007805 388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTS 424 (589)
Q Consensus 388 aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts 424 (589)
+|+||.++|..+ +-++..+.+++++++++.+|
T Consensus 210 aDiVint~P~~i-----i~~~~l~~~k~~aliIDlas 241 (287)
T TIGR02853 210 IDIVINTIPALV-----LTADVLSKLPKHAVIIDLAS 241 (287)
T ss_pred CCEEEECCChHH-----hCHHHHhcCCCCeEEEEeCc
Confidence 999999998432 11334455677877776555
No 251
>PF00574 CLP_protease: Clp protease; InterPro: IPR001907 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to the MEROPS peptidase family S14 (ClpP endopeptidase family, clan SK). ClpP is an ATP-dependent protease that cleaves a number of proteins, such as casein and albumin []. It exists as a heterodimer of ATP-binding regulatory A and catalytic P subunits, both of which are required for effective levels of protease activity in the presence of ATP [], although the P subunit alone does possess some catalytic activity. This family of sequences represent the P subunit. Proteases highly similar to ClpP have been found to be encoded in the genome of bacteria, metazoa, some viruses and in the chloroplast of plants. A number of the proteins in this family are classified as non-peptidase homologues as they have been found experimentally to be without peptidase activity, or lack amino acid residues that are believed to be essential for catalytic activity. ; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2ZL3_L 2ZL0_F 2ZL2_M 2ZL4_C 1TG6_D 2F6I_D 3V5I_b 3V5E_M 3QWD_D 2DEO_A ....
Probab=98.01 E-value=9.3e-06 Score=76.79 Aligned_cols=136 Identities=18% Similarity=0.260 Sum_probs=92.4
Q ss_pred CCHHHHHHHHHHHHHHhcCCCceE--EEEEcCCCCCcCCCCchhhhhccCCCcccccchhHHHHHHHHHHhCCCcEEEEe
Q 007805 28 LAIPIVAGLKDKFEEATSRDDVKA--IVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAV 105 (589)
Q Consensus 28 l~~~~~~~l~~~l~~~~~~~~v~~--vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kp~iaav 105 (589)
++.++...+.+.|..++.++..+- |.|.+. |+|+.. ...++ +.|..++.|++..+
T Consensus 25 I~~~~~~~~~~~L~~l~~~~~~~~i~i~INSp------GG~v~~----------------g~~i~-~~i~~~~~~v~t~~ 81 (182)
T PF00574_consen 25 IDEESANRLISQLLYLENEDKNKPINIYINSP------GGDVDA----------------GLAIY-DAIRSSKAPVTTVV 81 (182)
T ss_dssp BSHHHHHHHHHHHHHHHHHTSSSEEEEEEEEC------EBCHHH----------------HHHHH-HHHHHSSSEEEEEE
T ss_pred cCHHHHHHHHHHHHHHhccCCCceEEEEEcCC------CCccHH----------------HHHHH-HHHHhcCCCeEEEE
Confidence 889999999999888853332222 223443 344322 23555 77889999999999
Q ss_pred CCcccchhhHHhhhcCE--EEEeCCceEeccccccCCCCChhhh---------------hhHhhhc--CHHHHHHHHHcC
Q 007805 106 EGLALGGGLELAMGCHA--RIAAPKTQLGLPELTLGVIPGFGGT---------------QRLPRLV--GLSKAIEMMLLS 166 (589)
Q Consensus 106 ~G~a~GgG~~lala~D~--~ia~~~a~~~~pe~~~Gl~p~~g~~---------------~~l~~~~--G~~~a~~l~ltg 166 (589)
.|.|.+.|.-++++||. |++.+++.|.+-+...+......-. ..+.... ......+++-..
T Consensus 82 ~G~aaSaa~~i~~ag~~~~R~~~~~s~~m~H~p~~~~~g~~~~l~~~~~~l~~~~~~~~~~~~~~tg~~~~~i~~~~~~~ 161 (182)
T PF00574_consen 82 LGLAASAATLIFLAGDKGKRYASPNSRFMIHQPSTGSGGNASELREQAKELEKLNERIANIYAERTGLSKEEIEELMDRD 161 (182)
T ss_dssp EEEEETHHHHHHHTSSTTTEEE-TT-EEEES-CEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHTS-HHHHHHHCSST
T ss_pred eCccccceehhhhcCCcCceeeeecCEEEeecceeecccccchhHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHhCC
Confidence 99999999999999999 8999999999988865543211110 0112222 334445666667
Q ss_pred CCCCHHHHHHcCCcceecCc
Q 007805 167 KSITSEEGWKLGLIDAVVTS 186 (589)
Q Consensus 167 ~~~~a~~A~~~Glv~~vv~~ 186 (589)
..++|+||+++||||+|+..
T Consensus 162 ~~l~a~EA~~~GiiD~I~~~ 181 (182)
T PF00574_consen 162 TWLSAEEALEYGIIDEIIES 181 (182)
T ss_dssp EEEEHHHHHHHTSSSEEESS
T ss_pred ccccHHHHHHcCCCCEeccC
Confidence 77899999999999999753
No 252
>PLN02928 oxidoreductase family protein
Probab=98.01 E-value=3.2e-05 Score=80.58 Aligned_cols=150 Identities=11% Similarity=0.035 Sum_probs=88.1
Q ss_pred ceEEEEcCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cCCCC
Q 007805 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD 387 (589)
Q Consensus 309 ~kI~IIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~ 387 (589)
++|+|||+|.||..+|..+...|.+|++||++........ .. ..... ............++ +.+++
T Consensus 160 ktvGIiG~G~IG~~vA~~l~afG~~V~~~dr~~~~~~~~~--~~------~~~~~-----~~~~~~~~~~~~~L~ell~~ 226 (347)
T PLN02928 160 KTVFILGYGAIGIELAKRLRPFGVKLLATRRSWTSEPEDG--LL------IPNGD-----VDDLVDEKGGHEDIYEFAGE 226 (347)
T ss_pred CEEEEECCCHHHHHHHHHHhhCCCEEEEECCCCChhhhhh--hc------ccccc-----ccccccccCcccCHHHHHhh
Confidence 6899999999999999999999999999999743211100 00 00000 00000000012244 66899
Q ss_pred CCEEEEeccCChHHHHHHHHHHHHhCCCCcEEEecCCCCC--HHHHhcccCCC-CcEEEecCC--------CCCCCCCee
Q 007805 388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTID--LNIVGEKTSSQ-DRIIGAHFF--------SPAHVMPLL 456 (589)
Q Consensus 388 aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~--~~~~~~~~~~~-~r~ig~h~~--------~p~~~~~lv 456 (589)
||+|+.++|-..+.+.-+-++....++++++|+..+-+-. -+.+.+.+... -...++--| +|.+..+.+
T Consensus 227 aDiVvl~lPlt~~T~~li~~~~l~~Mk~ga~lINvaRG~lVde~AL~~AL~~g~i~gAaLDV~~~EP~~~~~pL~~~~nv 306 (347)
T PLN02928 227 ADIVVLCCTLTKETAGIVNDEFLSSMKKGALLVNIARGGLLDYDAVLAALESGHLGGLAIDVAWSEPFDPDDPILKHPNV 306 (347)
T ss_pred CCEEEECCCCChHhhcccCHHHHhcCCCCeEEEECCCccccCHHHHHHHHHcCCeeEEEEccCCCCCCCCCChhhcCCCE
Confidence 9999999998877655555667788999998876655533 34455554422 222333332 222344666
Q ss_pred eEecCCC-CCHHHHHH
Q 007805 457 EIVRTER-TSAQVILD 471 (589)
Q Consensus 457 eiv~~~~-t~~e~~~~ 471 (589)
.++|+-. .+++..+.
T Consensus 307 iiTPHia~~t~~~~~~ 322 (347)
T PLN02928 307 IITPHVAGVTEYSYRS 322 (347)
T ss_pred EECCcCCCChHHHHHH
Confidence 6777543 24443333
No 253
>PRK12319 acetyl-CoA carboxylase subunit alpha; Provisional
Probab=98.00 E-value=0.00017 Score=71.26 Aligned_cols=138 Identities=16% Similarity=0.126 Sum_probs=90.8
Q ss_pred CCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCCcCCCCchhhhhccCCCcccccchhHHHHHHHHHHhCCCcEEEEe
Q 007805 26 NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAV 105 (589)
Q Consensus 26 N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kp~iaav 105 (589)
-.++++-.+...+.++.+++. .+-+|-|.=.++++. |.+-.+ .-..+...+.+ ..+...+.|+|++|
T Consensus 77 G~~~~~g~rKa~R~~~lA~~~-~lPvV~lvDtpGa~~-g~~aE~----------~G~~~~ia~~~-~~~s~~~VP~IsVI 143 (256)
T PRK12319 77 GQPHPEGYRKALRLMKQAEKF-GRPVVTFINTAGAYP-GVGAEE----------RGQGEAIARNL-MEMSDLKVPIIAII 143 (256)
T ss_pred CCCCHHHHHHHHHHHHHHHHc-CCCEEEEEECCCcCC-CHhHHh----------ccHHHHHHHHH-HHHhCCCCCEEEEE
Confidence 568899999999999888765 344555543333332 332110 01122233444 45678899999999
Q ss_pred CCcccchhhHHhhhcCEEEEeCCceEeccccccCCCCChhhhhhHhhhcCHHHHHHHHHcCCCCCHHHHHHcCCcceecC
Q 007805 106 EGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVT 185 (589)
Q Consensus 106 ~G~a~GgG~~lala~D~~ia~~~a~~~~pe~~~Gl~p~~g~~~~l~~~~G~~~a~~l~ltg~~~~a~~A~~~Glv~~vv~ 185 (589)
-|.|.|||......||++++.+++.|+. +.|.++.+..+...--...+.+.+ .+++.++.+.|+||+|+|
T Consensus 144 ~G~~~gGgA~a~~~~D~v~m~~~a~~~v------~~pe~~a~il~~~~~~a~~aa~~~----~~~a~~l~~~g~iD~ii~ 213 (256)
T PRK12319 144 IGEGGSGGALALAVADQVWMLENTMYAV------LSPEGFASILWKDGSRATEAAELM----KITAGELLEMGVVDKVIP 213 (256)
T ss_pred eCCcCcHHHHHhhcCCEEEEecCceEEE------cCHHHHHHHHhcCcccHHHHHHHc----CCCHHHHHHCCCCcEecC
Confidence 9999999888888999999999988763 224444333333221223333333 779999999999999996
Q ss_pred c
Q 007805 186 S 186 (589)
Q Consensus 186 ~ 186 (589)
+
T Consensus 214 e 214 (256)
T PRK12319 214 E 214 (256)
T ss_pred C
Confidence 4
No 254
>PRK00066 ldh L-lactate dehydrogenase; Reviewed
Probab=97.97 E-value=2.1e-05 Score=80.94 Aligned_cols=97 Identities=24% Similarity=0.288 Sum_probs=65.2
Q ss_pred ceEEEEcCCCCcHHHHHHHHhCCC--eEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCccCCC
Q 007805 309 RKVAVIGGGLMGSGIATAHILNNI--YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFK 386 (589)
Q Consensus 309 ~kI~IIG~G~mG~~iA~~l~~~G~--~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~ 386 (589)
+||+|||+|.+|.++|..++..|. ++.++|++++.++.....++...... . . -.+. ++++++++
T Consensus 7 ~ki~iiGaG~vG~~~a~~l~~~~~~~el~L~D~~~~~~~g~~~Dl~~~~~~~-~-~-----------~~i~-~~~~~~~~ 72 (315)
T PRK00066 7 NKVVLVGDGAVGSSYAYALVNQGIADELVIIDINKEKAEGDAMDLSHAVPFT-S-P-----------TKIY-AGDYSDCK 72 (315)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCCchhHHHHHHHHhhcccc-C-C-----------eEEE-eCCHHHhC
Confidence 589999999999999999999987 89999999887655433333221100 0 0 1222 45668899
Q ss_pred CCCEEEEecc--C------------ChHHHHHHHHHHHHhCCCCcEEE
Q 007805 387 DVDMVIEAVI--E------------SVPLKQKIFSELEKACPPHCILA 420 (589)
Q Consensus 387 ~aDlVIeavp--e------------~~~~k~~v~~~l~~~~~~~~ii~ 420 (589)
+||+||.+.- . +..+.+++..++.++.+ +++++
T Consensus 73 ~adivIitag~~~k~g~~R~dll~~N~~i~~~i~~~i~~~~~-~~~vi 119 (315)
T PRK00066 73 DADLVVITAGAPQKPGETRLDLVEKNLKIFKSIVGEVMASGF-DGIFL 119 (315)
T ss_pred CCCEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCC-CeEEE
Confidence 9999998763 2 23344555666666665 44444
No 255
>TIGR00493 clpP ATP-dependent Clp protease, proteolytic subunit ClpP. This model for the proteolytic subunit ClpP has been rebuilt to a higher stringency. In every bacterial genome with the ClpXP machine, a ClpP protein will be found that scores with this model. In general, this ClpP member will be encoded adjacent to the clpX gene, as were all examples used in the seed alignment. A large fraction of genomes have one or more additional ClpP paralogs, sometimes encoded nearby and sometimes elsewhere. The stringency of the trusted cutoff used here excludes the more divergent ClpP paralogs from being called authentic ClpP by this model.
Probab=97.94 E-value=0.00012 Score=69.52 Aligned_cols=138 Identities=20% Similarity=0.161 Sum_probs=93.3
Q ss_pred CCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCCcCCCCchhhhhccCCCcccccchhHHHHHHHHHHhCCCcEEEEeC
Q 007805 27 ALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVE 106 (589)
Q Consensus 27 ~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kp~iaav~ 106 (589)
.++..+...+...|..++.++..+-|.+.=. |.|+|+. ....++ +.|...+.|+...+-
T Consensus 34 ~I~~~~~~~ii~~L~~l~~~~~~~~i~l~In----SpGG~v~----------------~g~~I~-d~l~~~~~~v~t~~~ 92 (191)
T TIGR00493 34 EVNDSVANLIVAQLLFLEAEDPEKDIYLYIN----SPGGSIT----------------AGLAIY-DTMQFIKPDVSTICI 92 (191)
T ss_pred EEChHHHHHHHHHHHHhhccCCCCCEEEEEE----CCCCCHH----------------HHHHHH-HHHHhcCCCEEEEEE
Confidence 3677888889999988886654444444211 2233332 123455 667778888888889
Q ss_pred CcccchhhHHhhhcC--EEEEeCCceEeccccccCCCCChhhh---------------hhHhhhcC--HHHHHHHHHcCC
Q 007805 107 GLALGGGLELAMGCH--ARIAAPKTQLGLPELTLGVIPGFGGT---------------QRLPRLVG--LSKAIEMMLLSK 167 (589)
Q Consensus 107 G~a~GgG~~lala~D--~~ia~~~a~~~~pe~~~Gl~p~~g~~---------------~~l~~~~G--~~~a~~l~ltg~ 167 (589)
|.|.+.|.-+++++| .|++.++++|.+.+..-|......-. ..+.+.-| .....+++-.+.
T Consensus 93 G~AaSaaslI~~aG~~~~r~~~p~s~imiH~p~~~~~G~a~d~~~~a~~l~~~~~~~~~~ya~~tg~~~~~i~~~~~~~~ 172 (191)
T TIGR00493 93 GQAASMGAFLLSAGAKGKRFSLPNSRIMIHQPLGGAQGQASDIEIQANEILRLKGLLNDILANHTGQSLEQIEKDTERDF 172 (191)
T ss_pred EeeccHHHHHHhcCCCCcEEecCCceEEEecCcccccCCcchhHHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHHhhCCc
Confidence 999999999998766 69999999998866543321111100 11233333 355667778889
Q ss_pred CCCHHHHHHcCCcceecC
Q 007805 168 SITSEEGWKLGLIDAVVT 185 (589)
Q Consensus 168 ~~~a~~A~~~Glv~~vv~ 185 (589)
.++|+||+++||||+|+.
T Consensus 173 ~lta~EA~~~GliD~ii~ 190 (191)
T TIGR00493 173 FMSAEEAKEYGLIDSVLT 190 (191)
T ss_pred cCcHHHHHHcCCccEEec
Confidence 999999999999999974
No 256
>PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.91 E-value=2.1e-05 Score=79.15 Aligned_cols=71 Identities=17% Similarity=0.222 Sum_probs=55.7
Q ss_pred ceEEEEcCC-CCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCccCCCC
Q 007805 309 RKVAVIGGG-LMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKD 387 (589)
Q Consensus 309 ~kI~IIG~G-~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~ 387 (589)
++|+|||.| .||.+||..|.++|++|++|++....++ +.+++
T Consensus 160 k~V~vIG~s~ivG~PmA~~L~~~gatVtv~~~~t~~l~-------------------------------------e~~~~ 202 (301)
T PRK14194 160 KHAVVIGRSNIVGKPMAALLLQAHCSVTVVHSRSTDAK-------------------------------------ALCRQ 202 (301)
T ss_pred CEEEEECCCCccHHHHHHHHHHCCCEEEEECCCCCCHH-------------------------------------HHHhc
Confidence 689999996 9999999999999999999987643221 34678
Q ss_pred CCEEEEeccCChHHHHHHHHHHHHhCCCCcEEEecC
Q 007805 388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNT 423 (589)
Q Consensus 388 aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~t 423 (589)
||+||.|++....+...+ +++++++++.+
T Consensus 203 ADIVIsavg~~~~v~~~~-------ik~GaiVIDvg 231 (301)
T PRK14194 203 ADIVVAAVGRPRLIDADW-------LKPGAVVIDVG 231 (301)
T ss_pred CCEEEEecCChhcccHhh-------ccCCcEEEEec
Confidence 999999998554433332 78999988765
No 257
>cd05294 LDH-like_MDH_nadp A lactate dehydrogenases-like structure with malate dehydrogenase enzymatic activity. The LDH-like MDH proteins have a lactate dehyhydrogenase-like (LDH-like) structure and malate dehydrogenase (MDH) enzymatic activity. This subgroup is composed of some archaeal LDH-like MDHs that prefer NADP(H) rather than NAD(H) as a cofactor. One member, MJ0490 from Methanococcus jannaschii, has been observed to form dimers and tetramers during crystalization, although it is believed to exist primarilly as a tetramer in solution. In addition to its MDH activity, MJ0490 also possesses fructose-1,6-bisphosphate-activated LDH activity. Members of this subgroup have a higher sequence similarity to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carbox
Probab=97.90 E-value=3.1e-05 Score=79.53 Aligned_cols=107 Identities=22% Similarity=0.226 Sum_probs=68.8
Q ss_pred ceEEEEcC-CCCcHHHHHHHHhCCC--eEEEEeCCh--HHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCcc
Q 007805 309 RKVAVIGG-GLMGSGIATAHILNNI--YVVLKEVNS--EYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYS 383 (589)
Q Consensus 309 ~kI~IIG~-G~mG~~iA~~l~~~G~--~V~~~d~~~--~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~ 383 (589)
+||+|+|+ |..|..+|..++..|+ +|+++|+++ ++++.....+. +.+...+. ..++..+++++
T Consensus 1 ~kI~IiGatG~vG~~~a~~l~~~g~~~~v~lvd~~~~~~~l~~~~~dl~---d~~~~~~~---------~~~i~~~~d~~ 68 (309)
T cd05294 1 MKVSIIGASGRVGSATALLLAKEDVVKEINLISRPKSLEKLKGLRLDIY---DALAAAGI---------DAEIKISSDLS 68 (309)
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCCEEEEEECcccccccccccchhh---hchhccCC---------CcEEEECCCHH
Confidence 48999998 9999999999999987 599999964 33332211111 11111110 01355566777
Q ss_pred CCCCCCEEEEecc--CC-----h-------HHHHHHHHHHHHhCCCCcEEEecCCCCCH
Q 007805 384 EFKDVDMVIEAVI--ES-----V-------PLKQKIFSELEKACPPHCILATNTSTIDL 428 (589)
Q Consensus 384 ~~~~aDlVIeavp--e~-----~-------~~k~~v~~~l~~~~~~~~ii~s~ts~~~~ 428 (589)
++++||+||.|+. .+ . .+.+++...|.++++ +++++..++..++
T Consensus 69 ~l~~aDiViitag~p~~~~~~r~dl~~~n~~i~~~~~~~i~~~~~-~~~viv~~npvd~ 126 (309)
T cd05294 69 DVAGSDIVIITAGVPRKEGMSRLDLAKKNAKIVKKYAKQIAEFAP-DTKILVVTNPVDV 126 (309)
T ss_pred HhCCCCEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCC-CeEEEEeCCchHH
Confidence 8999999999984 11 1 345566666777764 5666666665554
No 258
>CHL00198 accA acetyl-CoA carboxylase carboxyltransferase alpha subunit; Provisional
Probab=97.90 E-value=0.00044 Score=69.94 Aligned_cols=137 Identities=13% Similarity=0.084 Sum_probs=90.4
Q ss_pred CCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCCcCCCCchhhhhccCCCcccccchhHHHHHHHHHHhCCCcEEEEe
Q 007805 26 NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAV 105 (589)
Q Consensus 26 N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kp~iaav 105 (589)
-.++++-.+...+.++.++.. .+-+|-|--++++++ |.+-.+. .......+.+ ..+.....|+|++|
T Consensus 133 G~~~p~g~rKa~Rlm~lA~~f-~lPIItlvDTpGA~~-G~~AE~~----------G~~~aiar~l-~~~a~~~VP~IsVV 199 (322)
T CHL00198 133 GMPSPGGYRKALRLMKHANKF-GLPILTFIDTPGAWA-GVKAEKL----------GQGEAIAVNL-REMFSFEVPIICTI 199 (322)
T ss_pred CCCCHHHHHHHHHHHHHHHHc-CCCEEEEEeCCCcCc-CHHHHHH----------hHHHHHHHHH-HHHHcCCCCEEEEE
Confidence 568899999999999988765 344555543334443 4322110 0112222333 44678999999999
Q ss_pred CCcccchhhHHhhhcCEEEEeCCceEeccccccCCCCChhhhhhHhhhcCHHHHHHHHHcCCCCCHHHHHHcCCcceecC
Q 007805 106 EGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVT 185 (589)
Q Consensus 106 ~G~a~GgG~~lala~D~~ia~~~a~~~~pe~~~Gl~p~~g~~~~l~~~~G~~~a~~l~ltg~~~~a~~A~~~Glv~~vv~ 185 (589)
-|.|.|||.-....||++++.+++.|+. +.|.++++..+... .+|.+ +...-.++|++.+++|+||+|+|
T Consensus 200 iGeggsGGAlal~~aD~V~m~e~a~~sV------isPEg~a~Il~~d~---~~a~~-aA~~~~ita~dL~~~giiD~ii~ 269 (322)
T CHL00198 200 IGEGGSGGALGIGIGDSIMMLEYAVYTV------ATPEACAAILWKDS---KKSLD-AAEALKITSEDLKVLGIIDEIIP 269 (322)
T ss_pred eCcccHHHHHhhhcCCeEEEeCCeEEEe------cCHHHHHHHHhcch---hhHHH-HHHHcCCCHHHHHhCCCCeEecc
Confidence 9999888865444699999999998873 33555555444332 23322 34456899999999999999996
No 259
>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3.3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....
Probab=97.84 E-value=4.6e-05 Score=69.37 Aligned_cols=98 Identities=21% Similarity=0.246 Sum_probs=62.0
Q ss_pred ceEEEEcCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCccCCCCC
Q 007805 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKDV 388 (589)
Q Consensus 309 ~kI~IIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~a 388 (589)
+++.|+|.|..|.++|..|...|.+|+++|++|-++-+|. ++.....+-.++++.+
T Consensus 24 k~vvV~GYG~vG~g~A~~lr~~Ga~V~V~e~DPi~alqA~------------------------~dGf~v~~~~~a~~~a 79 (162)
T PF00670_consen 24 KRVVVIGYGKVGKGIARALRGLGARVTVTEIDPIRALQAA------------------------MDGFEVMTLEEALRDA 79 (162)
T ss_dssp SEEEEE--SHHHHHHHHHHHHTT-EEEEE-SSHHHHHHHH------------------------HTT-EEE-HHHHTTT-
T ss_pred CEEEEeCCCcccHHHHHHHhhCCCEEEEEECChHHHHHhh------------------------hcCcEecCHHHHHhhC
Confidence 6799999999999999999999999999999997655431 1223333222778999
Q ss_pred CEEEEeccCChHHHHHHHHHHHHhCCCCcEEEecCCC---CCHHHHhcc
Q 007805 389 DMVIEAVIESVPLKQKIFSELEKACPPHCILATNTST---IDLNIVGEK 434 (589)
Q Consensus 389 DlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~---~~~~~~~~~ 434 (589)
|++|-++.....+..+- .+.+++++|+++.++. +.+..+...
T Consensus 80 di~vtaTG~~~vi~~e~----~~~mkdgail~n~Gh~d~Eid~~~L~~~ 124 (162)
T PF00670_consen 80 DIFVTATGNKDVITGEH----FRQMKDGAILANAGHFDVEIDVDALEAN 124 (162)
T ss_dssp SEEEE-SSSSSSB-HHH----HHHS-TTEEEEESSSSTTSBTHHHHHTC
T ss_pred CEEEECCCCccccCHHH----HHHhcCCeEEeccCcCceeEeecccccc
Confidence 99999886544333333 3458899999866653 444454443
No 260
>PRK08410 2-hydroxyacid dehydrogenase; Provisional
Probab=97.83 E-value=0.0001 Score=75.79 Aligned_cols=99 Identities=15% Similarity=0.079 Sum_probs=71.6
Q ss_pred ceEEEEcCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cCCCC
Q 007805 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD 387 (589)
Q Consensus 309 ~kI~IIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~ 387 (589)
++|||||.|.+|..+|..+...|.+|..||+.....+ .+ .. ..++ +.++.
T Consensus 146 ktvGIiG~G~IG~~vA~~~~~fgm~V~~~d~~~~~~~---------------~~-------------~~-~~~l~ell~~ 196 (311)
T PRK08410 146 KKWGIIGLGTIGKRVAKIAQAFGAKVVYYSTSGKNKN---------------EE-------------YE-RVSLEELLKT 196 (311)
T ss_pred CEEEEECCCHHHHHHHHHHhhcCCEEEEECCCccccc---------------cC-------------ce-eecHHHHhhc
Confidence 7899999999999999999888999999998632100 00 11 1234 66899
Q ss_pred CCEEEEeccCChHHHHHHHHHHHHhCCCCcEEEecCCC--CCHHHHhcccC
Q 007805 388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTST--IDLNIVGEKTS 436 (589)
Q Consensus 388 aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~--~~~~~~~~~~~ 436 (589)
||+|+.++|-..+.+.-+=++....++++++++..+-+ +.-+.+.+.+.
T Consensus 197 sDvv~lh~Plt~~T~~li~~~~~~~Mk~~a~lIN~aRG~vVDe~AL~~AL~ 247 (311)
T PRK08410 197 SDIISIHAPLNEKTKNLIAYKELKLLKDGAILINVGRGGIVNEKDLAKALD 247 (311)
T ss_pred CCEEEEeCCCCchhhcccCHHHHHhCCCCeEEEECCCccccCHHHHHHHHH
Confidence 99999999987776555556677789999988755544 33345555554
No 261
>TIGR00513 accA acetyl-CoA carboxylase, carboxyl transferase, alpha subunit. The enzyme acetyl-CoA carboxylase contains a biotin carboxyl carrier protein or domain, a biotin carboxylase, and a carboxyl transferase. This model represents the alpha chain of the carboxyl transferase for cases in which the architecture of the protein is as in E. coli, in which the carboxyltransferase portion consists of two non-identical subnits, alpha and beta.
Probab=97.82 E-value=0.00066 Score=68.69 Aligned_cols=137 Identities=15% Similarity=0.099 Sum_probs=88.0
Q ss_pred CCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCCcCCCCchhhhhccCCCcccccchhHHHHHHHHHHhCCCcEEEEe
Q 007805 26 NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAV 105 (589)
Q Consensus 26 N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kp~iaav 105 (589)
-+++++-.+...+.++.++.- .+-+|-|-=++++++ |.+..+.. ..+...+.+ ..+....+|+|++|
T Consensus 130 G~~~p~g~rKa~R~m~lA~~f-~iPvVtlvDTpGa~~-g~~aE~~G----------~~~aia~~l-~a~s~~~VP~IsVV 196 (316)
T TIGR00513 130 GMPAPEGYRKALRLMKMAERF-KMPIITFIDTPGAYP-GIGAEERG----------QSEAIARNL-REMARLGVPVICTV 196 (316)
T ss_pred CCCCHHHHHHHHHHHHHHHHc-CCCEEEEEECCCCCC-CHHHHHHH----------HHHHHHHHH-HHHHcCCCCEEEEE
Confidence 578899999999999988764 344555543333332 43322110 112222333 45778899999999
Q ss_pred CCcccchhhHHhhhcCEEEEeCCceEeccccccCCCCChhhhhhHhhhcCHHHHHHHHHcCCCCCHHHHHHcCCcceecC
Q 007805 106 EGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVT 185 (589)
Q Consensus 106 ~G~a~GgG~~lala~D~~ia~~~a~~~~pe~~~Gl~p~~g~~~~l~~~~G~~~a~~l~ltg~~~~a~~A~~~Glv~~vv~ 185 (589)
-|.|.|||......||++++.+++.|+. +.|.++.+..+...--...+.+ -..+++.++++.|+||+|+|
T Consensus 197 iGeggsGGAla~~~aD~v~m~~~a~~sV------isPEg~a~Il~kd~~~a~~aae----~~~~ta~~l~~~G~iD~II~ 266 (316)
T TIGR00513 197 IGEGGSGGALAIGVGDKVNMLEYSTYSV------ISPEGCAAILWKDASKAPKAAE----AMKITAPDLKELGLIDSIIP 266 (316)
T ss_pred ecccccHHHhhhccCCEEEEecCceEEe------cCHHHHHHHhccchhhHHHHHH----HccCCHHHHHHCCCCeEecc
Confidence 9999777775555699999999988763 2344444433332211222222 26778999999999999996
No 262
>PF01972 SDH_sah: Serine dehydrogenase proteinase; InterPro: IPR002825 This family of archaebacterial proteins, formerly known as DUF114, has been found to be a serine dehydrogenase proteinase distantly related to ClpP proteinases that belong to the serine proteinase superfamily. The family belong to MEROPS peptidase family S49; they are mostly unassigned peptidases but include the archaean signal peptide peptidase 1 []. The family has a catalytic triad of Ser, Asp, His residues, which shows an altered residue ordering compared with the ClpP proteinases but similar to that of the carboxypeptidase clan []. ; GO: 0016021 integral to membrane
Probab=97.81 E-value=0.00051 Score=67.12 Aligned_cols=99 Identities=14% Similarity=0.233 Sum_probs=77.5
Q ss_pred CCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCCcCCCCchhhhhccCCCcccccchhHHHHHHHHHHhCCCcEE
Q 007805 23 PPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIV 102 (589)
Q Consensus 23 p~~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kp~i 102 (589)
|-.+.++.+..+++.++++....+..+ .++|.. .|+++.. ..++. +.+..++.|++
T Consensus 67 Pi~~~I~i~dse~v~raI~~~~~~~~I-dLii~T------pGG~v~A----------------A~~I~-~~l~~~~~~v~ 122 (285)
T PF01972_consen 67 PIYRYIDIDDSEFVLRAIREAPKDKPI-DLIIHT------PGGLVDA----------------AEQIA-RALREHPAKVT 122 (285)
T ss_pred ccceeEcHhhHHHHHHHHHhcCCCCce-EEEEEC------CCCcHHH----------------HHHHH-HHHHhCCCCEE
Confidence 334678999999999999998776655 334432 2333321 11333 66788999999
Q ss_pred EEeCCcccchhhHHhhhcCEEEEeCCceEeccccccCCCCChh
Q 007805 103 AAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFG 145 (589)
Q Consensus 103 aav~G~a~GgG~~lala~D~~ia~~~a~~~~pe~~~Gl~p~~g 145 (589)
+.|+..|+.+|.-++|+||-+++++.+.+|.-+..+|-.|..+
T Consensus 123 v~VP~~A~SAGTlIALaADeIvM~p~a~LGpiDPqi~~~pA~s 165 (285)
T PF01972_consen 123 VIVPHYAMSAGTLIALAADEIVMGPGAVLGPIDPQIGQYPAAS 165 (285)
T ss_pred EEECcccccHHHHHHHhCCeEEECCCCccCCCCccccCCChHH
Confidence 9999999999999999999999999999999999999988644
No 263
>PRK15409 bifunctional glyoxylate/hydroxypyruvate reductase B; Provisional
Probab=97.80 E-value=0.00016 Score=74.64 Aligned_cols=102 Identities=12% Similarity=0.076 Sum_probs=71.4
Q ss_pred ceEEEEcCCCCcHHHHHHHH-hCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cCCC
Q 007805 309 RKVAVIGGGLMGSGIATAHI-LNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFK 386 (589)
Q Consensus 309 ~kI~IIG~G~mG~~iA~~l~-~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~ 386 (589)
++|||||.|.||..+|..+. ..|.+|..||+........ ..+ ... .++ +.++
T Consensus 146 ktvGIiG~G~IG~~va~~l~~~fgm~V~~~~~~~~~~~~~------------~~~-------------~~~-~~l~ell~ 199 (323)
T PRK15409 146 KTLGIVGMGRIGMALAQRAHFGFNMPILYNARRHHKEAEE------------RFN-------------ARY-CDLDTLLQ 199 (323)
T ss_pred CEEEEEcccHHHHHHHHHHHhcCCCEEEEECCCCchhhHH------------hcC-------------cEe-cCHHHHHH
Confidence 78999999999999999987 6788999999864221100 000 112 244 5679
Q ss_pred CCCEEEEeccCChHHHHHHHHHHHHhCCCCcEEEecCCC--CCHHHHhcccC
Q 007805 387 DVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTST--IDLNIVGEKTS 436 (589)
Q Consensus 387 ~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~--~~~~~~~~~~~ 436 (589)
.||+|+.++|-..+.+.-+=++....++++++++..+-+ +.-+.+.+.+.
T Consensus 200 ~sDvv~lh~plt~~T~~li~~~~l~~mk~ga~lIN~aRG~vVde~AL~~AL~ 251 (323)
T PRK15409 200 ESDFVCIILPLTDETHHLFGAEQFAKMKSSAIFINAGRGPVVDENALIAALQ 251 (323)
T ss_pred hCCEEEEeCCCChHHhhccCHHHHhcCCCCeEEEECCCccccCHHHHHHHHH
Confidence 999999999988876655556677889999988754434 33345555554
No 264
>PLN03230 acetyl-coenzyme A carboxylase carboxyl transferase; Provisional
Probab=97.80 E-value=0.00086 Score=69.55 Aligned_cols=138 Identities=16% Similarity=0.099 Sum_probs=89.9
Q ss_pred CCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCCcCCCCchhhhhccCCCcccccchhHHHHHHHHHHhCCCcEEEEe
Q 007805 26 NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAV 105 (589)
Q Consensus 26 N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kp~iaav 105 (589)
.+++++-.+...+.++.++.. .+=+|-|-=+++++ .|.+-.+. .......+.+ ..+....+|+|++|
T Consensus 200 G~~~peGyRKAlR~mklAekf-~lPIVtLVDTpGA~-pG~~AEe~----------Gqa~aIAr~l-~ams~l~VPiISVV 266 (431)
T PLN03230 200 AMPQPNGYRKALRFMRHAEKF-GFPILTFVDTPGAY-AGIKAEEL----------GQGEAIAFNL-REMFGLRVPIIATV 266 (431)
T ss_pred CCCCHHHHHHHHHHHHHHHHc-CCCEEEEEeCCCcC-CCHHHHHH----------hHHHHHHHHH-HHHhcCCCCEEEEE
Confidence 468899999999999988765 34445443333322 33332221 0112222334 45788999999999
Q ss_pred CCcccchhhHHhhhcCEEEEeCCceEeccccccCCCCChhhhhhHhhhcCHHHHHHHHHcCCCCCHHHHHHcCCcceecC
Q 007805 106 EGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVT 185 (589)
Q Consensus 106 ~G~a~GgG~~lala~D~~ia~~~a~~~~pe~~~Gl~p~~g~~~~l~~~~G~~~a~~l~ltg~~~~a~~A~~~Glv~~vv~ 185 (589)
-|.+.+||......||++++.+++.|+. +-|.++++..+...--...|.+ .-.++|.++++.|+||+|+|
T Consensus 267 iGeGgSGGAlalg~aD~VlMle~A~ysV------isPEgaAsILwkd~~~A~eAAe----alkitA~dL~~~GiID~II~ 336 (431)
T PLN03230 267 IGEGGSGGALAIGCGNRMLMMENAVYYV------ASPEACAAILWKSAAAAPKAAE----ALRITAAELVKLGVVDEIVP 336 (431)
T ss_pred eCCCCcHHHHHhhcCCEEEEecCCEEEe------cCHHHHHHHHhccccchHHHHH----HcCCCHHHHHhCCCCeEecc
Confidence 9999666654445789999999987663 2355555555544333333444 33899999999999999996
Q ss_pred c
Q 007805 186 S 186 (589)
Q Consensus 186 ~ 186 (589)
+
T Consensus 337 E 337 (431)
T PLN03230 337 E 337 (431)
T ss_pred C
Confidence 3
No 265
>COG0039 Mdh Malate/lactate dehydrogenases [Energy production and conversion]
Probab=97.79 E-value=6.9e-05 Score=75.75 Aligned_cols=102 Identities=25% Similarity=0.328 Sum_probs=64.2
Q ss_pred ceEEEEcCCCCcHHHHHHHHhCCC--eEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCccCCC
Q 007805 309 RKVAVIGGGLMGSGIATAHILNNI--YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFK 386 (589)
Q Consensus 309 ~kI~IIG~G~mG~~iA~~l~~~G~--~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~ 386 (589)
+||+|||+|.+|+++|..|...++ ++.++|++++..+--...+..... ....-..+....++++++
T Consensus 1 ~KVaviGaG~VG~s~a~~l~~~~~~~el~LiDi~~~~~~G~a~DL~~~~~------------~~~~~~~i~~~~~y~~~~ 68 (313)
T COG0039 1 MKVAVIGAGNVGSSLAFLLLLQGLGSELVLIDINEEKAEGVALDLSHAAA------------PLGSDVKITGDGDYEDLK 68 (313)
T ss_pred CeEEEECCChHHHHHHHHHhcccccceEEEEEcccccccchhcchhhcch------------hccCceEEecCCChhhhc
Confidence 489999999999999999987754 899999995543321111111100 000002233334478999
Q ss_pred CCCEEEEec--cC------------ChHHHHHHHHHHHHhCCCCcEEEecC
Q 007805 387 DVDMVIEAV--IE------------SVPLKQKIFSELEKACPPHCILATNT 423 (589)
Q Consensus 387 ~aDlVIeav--pe------------~~~~k~~v~~~l~~~~~~~~ii~s~t 423 (589)
+||+|+++. |. +..+.+++-+++.++++ +.++...|
T Consensus 69 ~aDiVvitAG~prKpGmtR~DLl~~Na~I~~~i~~~i~~~~~-d~ivlVvt 118 (313)
T COG0039 69 GADIVVITAGVPRKPGMTRLDLLEKNAKIVKDIAKAIAKYAP-DAIVLVVT 118 (313)
T ss_pred CCCEEEEeCCCCCCCCCCHHHHHHhhHHHHHHHHHHHHhhCC-CeEEEEec
Confidence 999999987 54 33455566667777776 45444333
No 266
>cd05290 LDH_3 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=97.78 E-value=5.9e-05 Score=77.12 Aligned_cols=74 Identities=20% Similarity=0.277 Sum_probs=50.8
Q ss_pred eEEEEcCCCCcHHHHHHHHhCCC--eEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCccCCCC
Q 007805 310 KVAVIGGGLMGSGIATAHILNNI--YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKD 387 (589)
Q Consensus 310 kI~IIG~G~mG~~iA~~l~~~G~--~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~ 387 (589)
||+|||+|.+|+++|..++..|. ++.++|++++.++.-...+...... .... --.+. +.+++++++
T Consensus 1 Ki~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~~~~a~g~a~DL~~~~~~-~~~~----------~~~i~-~~~y~~~~~ 68 (307)
T cd05290 1 KLVVIGAGHVGSAVLNYALALGLFSEIVLIDVNEGVAEGEALDFHHATAL-TYST----------NTKIR-AGDYDDCAD 68 (307)
T ss_pred CEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCcchhhHHHHHHHhhhcc-CCCC----------CEEEE-ECCHHHhCC
Confidence 69999999999999999998886 8999999987654432222211100 0000 00222 456799999
Q ss_pred CCEEEEec
Q 007805 388 VDMVIEAV 395 (589)
Q Consensus 388 aDlVIeav 395 (589)
||+||.+.
T Consensus 69 aDivvita 76 (307)
T cd05290 69 ADIIVITA 76 (307)
T ss_pred CCEEEECC
Confidence 99999876
No 267
>PRK14514 ATP-dependent Clp protease proteolytic subunit; Provisional
Probab=97.77 E-value=0.00034 Score=67.43 Aligned_cols=138 Identities=15% Similarity=0.150 Sum_probs=92.2
Q ss_pred CCCCHHHHHHHHHHHHHHhcCCCceEEE--EEcCCCCCcCCCCchhhhhccCCCcccccchhHHHHHHHHHHhCCCcEEE
Q 007805 26 NALAIPIVAGLKDKFEEATSRDDVKAIV--LTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVA 103 (589)
Q Consensus 26 N~l~~~~~~~l~~~l~~~~~~~~v~~vv--l~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kp~ia 103 (589)
..++..+...+...|..++..+.-+-|. |.+.|+...+ ...++ +.+...+.||..
T Consensus 61 ~~Idd~~a~~i~aqLl~L~~~~~~~~I~lyINSpGGsv~a----------------------GlaIy-d~m~~~~~~V~t 117 (221)
T PRK14514 61 TQIDDYTANTIQAQLLYLDSVDPGKDISIYINSPGGSVYA----------------------GLGIY-DTMQFISSDVAT 117 (221)
T ss_pred CEEcHHHHHHHHHHHHHHhccCCCCCEEEEEECCCcchhh----------------------HHHHH-HHHHhcCCCEEE
Confidence 3577888888888777776433222222 2343332111 22455 678889999999
Q ss_pred EeCCcccchhhHHhhhcCE--EEEeCCceEeccccccCCCCChhhh---------------hhHhhhcC--HHHHHHHHH
Q 007805 104 AVEGLALGGGLELAMGCHA--RIAAPKTQLGLPELTLGVIPGFGGT---------------QRLPRLVG--LSKAIEMML 164 (589)
Q Consensus 104 av~G~a~GgG~~lala~D~--~ia~~~a~~~~pe~~~Gl~p~~g~~---------------~~l~~~~G--~~~a~~l~l 164 (589)
.+-|.|.+.|.-|++++|. |++.+++++.+-...-|......-. ..+.+.-| .....+++-
T Consensus 118 v~~G~AAS~AslIl~aG~~gkR~~~pna~iMiHqP~~~~~G~a~di~i~a~el~~~~~~i~~iya~~TG~~~e~I~~~~~ 197 (221)
T PRK14514 118 ICTGMAASMASVLLVAGTKGKRSALPHSRVMIHQPLGGAQGQASDIEITAREIQKLKKELYTIIADHSGTPFDKVWADSD 197 (221)
T ss_pred EEEEEehhHHHHHHhcCCCCceeeCCCCEEEeccCCcccCCCcchHHHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHHhh
Confidence 9999999999999999996 8999999988766543321111100 01222334 345556777
Q ss_pred cCCCCCHHHHHHcCCcceecCc
Q 007805 165 LSKSITSEEGWKLGLIDAVVTS 186 (589)
Q Consensus 165 tg~~~~a~~A~~~Glv~~vv~~ 186 (589)
....++|+||+++||||+|+..
T Consensus 198 rd~wmtA~EA~eyGliD~Vi~~ 219 (221)
T PRK14514 198 RDYWMTAQEAKEYGMIDEVLIK 219 (221)
T ss_pred cCccCCHHHHHHcCCccEEeec
Confidence 7888999999999999999853
No 268
>PRK12551 ATP-dependent Clp protease proteolytic subunit; Reviewed
Probab=97.76 E-value=0.00036 Score=66.29 Aligned_cols=138 Identities=17% Similarity=0.155 Sum_probs=95.2
Q ss_pred CCCHHHHHHHHHHHHHHhcCCCceEEEE--EcCCCCCcCCCCchhhhhccCCCcccccchhHHHHHHHHHHhCCCcEEEE
Q 007805 27 ALAIPIVAGLKDKFEEATSRDDVKAIVL--TGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAA 104 (589)
Q Consensus 27 ~l~~~~~~~l~~~l~~~~~~~~v~~vvl--~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kp~iaa 104 (589)
.++.++..++...|..++.++..+-|.+ -+.| +|+.. ....+ +.+...+.||...
T Consensus 33 ~i~~~~a~~ii~~Ll~l~~~~~~~~I~l~INSpG------G~v~~----------------g~aIy-d~m~~~~~~V~t~ 89 (196)
T PRK12551 33 PVTSDSANRIVAQLLFLEAEDPEKDIYLYINSPG------GSVYD----------------GLGIF-DTMQHVKPDVHTV 89 (196)
T ss_pred eecHHHHHHHHHHHHHhhccCCCCCEEEEEeCCC------cchhh----------------HHHHH-HHHHhcCCCEEEE
Confidence 4899999999999999986543344443 3333 33221 22455 6788899999999
Q ss_pred eCCcccchhhHHhhhcCE--EEEeCCceEeccccccCCCCChhhh---------------hhHhhhcC--HHHHHHHHHc
Q 007805 105 VEGLALGGGLELAMGCHA--RIAAPKTQLGLPELTLGVIPGFGGT---------------QRLPRLVG--LSKAIEMMLL 165 (589)
Q Consensus 105 v~G~a~GgG~~lala~D~--~ia~~~a~~~~pe~~~Gl~p~~g~~---------------~~l~~~~G--~~~a~~l~lt 165 (589)
+-|.|.+.|.-|++++|- |++.+++++.+-...-|..-...-. ..+.+.-| .....+++-.
T Consensus 90 ~~G~AaS~AslIl~aG~~~~R~~~p~a~iMIHqP~~~~~G~a~di~~~a~~l~~~~~~~~~~ya~~tG~~~~~i~~~~~r 169 (196)
T PRK12551 90 CVGLAASMGAFLLCAGAKGKRSSLQHSRIMIHQPLGGARGQASDIRIQADEILFLKERLNTELSERTGQPLERIQEDTDR 169 (196)
T ss_pred EEEEehhHHHHHHhCCCCCceecCCCCEEEEecCCcccCCCcchHHHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHHhhc
Confidence 999999999999999985 8888999887766543321100000 01222333 2445567777
Q ss_pred CCCCCHHHHHHcCCcceecCch
Q 007805 166 SKSITSEEGWKLGLIDAVVTSE 187 (589)
Q Consensus 166 g~~~~a~~A~~~Glv~~vv~~~ 187 (589)
...++|+||+++||||+|++..
T Consensus 170 d~~msa~EA~eyGliD~I~~~~ 191 (196)
T PRK12551 170 DFFMSPSEAVEYGLIDLVIDKR 191 (196)
T ss_pred CcCCCHHHHHHcCCCcEEeccC
Confidence 7889999999999999998653
No 269
>PRK13302 putative L-aspartate dehydrogenase; Provisional
Probab=97.75 E-value=0.00014 Score=73.28 Aligned_cols=81 Identities=23% Similarity=0.197 Sum_probs=54.9
Q ss_pred CccceEEEEcCCCCcHHHHHHHHhC--CCeEE-EEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc
Q 007805 306 RGVRKVAVIGGGLMGSGIATAHILN--NIYVV-LKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY 382 (589)
Q Consensus 306 ~~~~kI~IIG~G~mG~~iA~~l~~~--G~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~ 382 (589)
|...||||||+|.||..++..+.+. +++|. +||+++++.+...+. ++.....+++
T Consensus 4 m~~irIGIIG~G~IG~~~a~~L~~~~~~~el~aV~dr~~~~a~~~a~~----------------------~g~~~~~~~~ 61 (271)
T PRK13302 4 RPELRVAIAGLGAIGKAIAQALDRGLPGLTLSAVAVRDPQRHADFIWG----------------------LRRPPPVVPL 61 (271)
T ss_pred CCeeEEEEECccHHHHHHHHHHHhcCCCeEEEEEECCCHHHHHHHHHh----------------------cCCCcccCCH
Confidence 3457899999999999999999863 78876 889998876543211 0111223444
Q ss_pred -cCCCCCCEEEEeccCChHHHHHHHHHHH
Q 007805 383 -SEFKDVDMVIEAVIESVPLKQKIFSELE 410 (589)
Q Consensus 383 -~~~~~aDlVIeavpe~~~~k~~v~~~l~ 410 (589)
+.+.++|+|++|+|.+. ..++..+..
T Consensus 62 eell~~~D~Vvi~tp~~~--h~e~~~~aL 88 (271)
T PRK13302 62 DQLATHADIVVEAAPASV--LRAIVEPVL 88 (271)
T ss_pred HHHhcCCCEEEECCCcHH--HHHHHHHHH
Confidence 44678999999999554 344444433
No 270
>PRK05724 acetyl-CoA carboxylase carboxyltransferase subunit alpha; Validated
Probab=97.73 E-value=0.0016 Score=66.03 Aligned_cols=138 Identities=18% Similarity=0.126 Sum_probs=90.8
Q ss_pred CCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCCcCCCCchhhhhccCCCcccccchhHHHHHHHHHHhCCCcEEEEe
Q 007805 26 NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAV 105 (589)
Q Consensus 26 N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kp~iaav 105 (589)
-+++++-.+...+.++.++.- .+-+|-|.=++++++ |.+-.+ .-..+.....+ ..+.....|+|++|
T Consensus 130 G~~~peg~rKa~R~m~lA~~f-~lPIVtlvDTpGa~~-G~~aE~----------~G~~~aia~~l-~~~a~~~VP~IsVI 196 (319)
T PRK05724 130 GMPRPEGYRKALRLMKMAEKF-GLPIITFIDTPGAYP-GIGAEE----------RGQSEAIARNL-REMARLKVPIICTV 196 (319)
T ss_pred CCCCHHHHHHHHHHHHHHHHc-CCCEEEEEeCCCCCC-CHHHHh----------ccHHHHHHHHH-HHHhCCCCCEEEEE
Confidence 478899999999999888764 455565544444433 433221 00112222444 55789999999999
Q ss_pred CCcccchhhHHhhhcCEEEEeCCceEeccccccCCCCChhhhhhHhhhcCHHHHHHHHHcCCCCCHHHHHHcCCcceecC
Q 007805 106 EGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVT 185 (589)
Q Consensus 106 ~G~a~GgG~~lala~D~~ia~~~a~~~~pe~~~Gl~p~~g~~~~l~~~~G~~~a~~l~ltg~~~~a~~A~~~Glv~~vv~ 185 (589)
-|.|.|||.-....||++++.+++.|+ .+++-|.+..|-+- ..++.+..- ...+++.++++.|+||+|+|
T Consensus 197 iGeg~sGGAla~~~aD~v~m~~~A~~s-------visPEg~a~Il~~~--~~~a~~aae-~~~ita~~l~~~g~iD~II~ 266 (319)
T PRK05724 197 IGEGGSGGALAIGVGDRVLMLEYSTYS-------VISPEGCASILWKD--ASKAPEAAE-AMKITAQDLKELGIIDEIIP 266 (319)
T ss_pred eCCccHHHHHHHhccCeeeeecCceEe-------ecCHHHHHHHHhcC--chhHHHHHH-HcCCCHHHHHHCCCceEecc
Confidence 999988777555569999999988776 34333444444332 123333333 56689999999999999996
Q ss_pred c
Q 007805 186 S 186 (589)
Q Consensus 186 ~ 186 (589)
.
T Consensus 267 E 267 (319)
T PRK05724 267 E 267 (319)
T ss_pred C
Confidence 3
No 271
>PRK13304 L-aspartate dehydrogenase; Reviewed
Probab=97.72 E-value=0.00014 Score=73.06 Aligned_cols=85 Identities=21% Similarity=0.224 Sum_probs=57.0
Q ss_pred ceEEEEcCCCCcHHHHHHHHhC--CCe-EEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cC
Q 007805 309 RKVAVIGGGLMGSGIATAHILN--NIY-VVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SE 384 (589)
Q Consensus 309 ~kI~IIG~G~mG~~iA~~l~~~--G~~-V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~ 384 (589)
.||+|||+|.||..++..+.+. +++ +.++|+++++.+...+. . .....+++ +.
T Consensus 2 mrIgIIG~G~iG~~ia~~l~~~~~~~elv~v~d~~~~~a~~~a~~----------~-------------~~~~~~~~~el 58 (265)
T PRK13304 2 LKIGIVGCGAIASLITKAILSGRINAELYAFYDRNLEKAENLASK----------T-------------GAKACLSIDEL 58 (265)
T ss_pred CEEEEECccHHHHHHHHHHHcCCCCeEEEEEECCCHHHHHHHHHh----------c-------------CCeeECCHHHH
Confidence 5899999999999999999876 455 55899998876653220 0 11233455 44
Q ss_pred CCCCCEEEEeccCChHHHHHHHHHHHHhCCCCcEE
Q 007805 385 FKDVDMVIEAVIESVPLKQKIFSELEKACPPHCIL 419 (589)
Q Consensus 385 ~~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii 419 (589)
+.++|+|++|+| .....++..++.+. ..+.++
T Consensus 59 l~~~DvVvi~a~--~~~~~~~~~~al~~-Gk~Vvv 90 (265)
T PRK13304 59 VEDVDLVVECAS--VNAVEEVVPKSLEN-GKDVII 90 (265)
T ss_pred hcCCCEEEEcCC--hHHHHHHHHHHHHc-CCCEEE
Confidence 588999999998 44445555555442 344444
No 272
>PRK00257 erythronate-4-phosphate dehydrogenase; Validated
Probab=97.72 E-value=2.8e-05 Score=81.58 Aligned_cols=98 Identities=11% Similarity=0.109 Sum_probs=67.0
Q ss_pred ceEEEEcCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cCCCC
Q 007805 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD 387 (589)
Q Consensus 309 ~kI~IIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~ 387 (589)
++|||||+|.||..+|..+...|++|.+||+.....+ + ... ..++ +.+++
T Consensus 117 ktvGIIG~G~IG~~va~~l~a~G~~V~~~Dp~~~~~~----------------~------------~~~-~~~l~ell~~ 167 (381)
T PRK00257 117 RTYGVVGAGHVGGRLVRVLRGLGWKVLVCDPPRQEAE----------------G------------DGD-FVSLERILEE 167 (381)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEECCcccccc----------------c------------Ccc-ccCHHHHHhh
Confidence 6899999999999999999999999999997533110 0 001 1234 55789
Q ss_pred CCEEEEeccCChH---HHHHHH-HHHHHhCCCCcEEEecCCCCCH--HHHhccc
Q 007805 388 VDMVIEAVIESVP---LKQKIF-SELEKACPPHCILATNTSTIDL--NIVGEKT 435 (589)
Q Consensus 388 aDlVIeavpe~~~---~k~~v~-~~l~~~~~~~~ii~s~ts~~~~--~~~~~~~ 435 (589)
||+|+.++|-..+ -...++ ++....++++++++..+-+-.+ ..+.+.+
T Consensus 168 aDiV~lh~Plt~~g~~~T~~li~~~~l~~mk~gailIN~aRG~vVde~AL~~aL 221 (381)
T PRK00257 168 CDVISLHTPLTKEGEHPTRHLLDEAFLASLRPGAWLINASRGAVVDNQALREAL 221 (381)
T ss_pred CCEEEEeCcCCCCccccccccCCHHHHhcCCCCeEEEECCCCcccCHHHHHHHH
Confidence 9999999996542 122333 4566778999988755544333 3454444
No 273
>PRK05442 malate dehydrogenase; Provisional
Probab=97.71 E-value=7.5e-05 Score=76.93 Aligned_cols=103 Identities=15% Similarity=0.081 Sum_probs=65.6
Q ss_pred cceEEEEcC-CCCcHHHHHHHHhCCC-------eEEEEeCChH--HHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhccc
Q 007805 308 VRKVAVIGG-GLMGSGIATAHILNNI-------YVVLKEVNSE--YLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLK 377 (589)
Q Consensus 308 ~~kI~IIG~-G~mG~~iA~~l~~~G~-------~V~~~d~~~~--~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~ 377 (589)
..||+|||+ |.+|+++|..++..|. ++.++|++++ +++.-.-.+..... .......
T Consensus 4 ~~KV~IiGaaG~VG~~~a~~l~~~~~~~~~~~~el~LiDi~~~~~~~~g~a~Dl~~~~~--------------~~~~~~~ 69 (326)
T PRK05442 4 PVRVAVTGAAGQIGYSLLFRIASGDMLGKDQPVILQLLEIPPALKALEGVVMELDDCAF--------------PLLAGVV 69 (326)
T ss_pred CcEEEEECCCcHHHHHHHHHHHhhhhcCCCCccEEEEEecCCcccccceeehhhhhhhh--------------hhcCCcE
Confidence 469999998 9999999999988764 7999999653 22221111111110 0001112
Q ss_pred c-cCCccCCCCCCEEEEecc--C------------ChHHHHHHHHHHHHhCCCCcEEEecCC
Q 007805 378 G-VLDYSEFKDVDMVIEAVI--E------------SVPLKQKIFSELEKACPPHCILATNTS 424 (589)
Q Consensus 378 ~-~~~~~~~~~aDlVIeavp--e------------~~~~k~~v~~~l~~~~~~~~ii~s~ts 424 (589)
. +.+++++++||+||.+.- . +..+.+++..+|.++.+++++++..|.
T Consensus 70 i~~~~y~~~~daDiVVitaG~~~k~g~tR~dll~~Na~i~~~i~~~i~~~~~~~~iiivvsN 131 (326)
T PRK05442 70 ITDDPNVAFKDADVALLVGARPRGPGMERKDLLEANGAIFTAQGKALNEVAARDVKVLVVGN 131 (326)
T ss_pred EecChHHHhCCCCEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEeCC
Confidence 2 355689999999998762 2 223455666778888877877765553
No 274
>PRK06932 glycerate dehydrogenase; Provisional
Probab=97.71 E-value=0.00022 Score=73.38 Aligned_cols=98 Identities=15% Similarity=0.181 Sum_probs=70.7
Q ss_pred ceEEEEcCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cCCCC
Q 007805 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD 387 (589)
Q Consensus 309 ~kI~IIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~ 387 (589)
++|||||.|.+|..+|..+...|.+|+.||+.... . ... ...++ +.++.
T Consensus 148 ktvgIiG~G~IG~~va~~l~~fg~~V~~~~~~~~~--~------------~~~----------------~~~~l~ell~~ 197 (314)
T PRK06932 148 STLGVFGKGCLGTEVGRLAQALGMKVLYAEHKGAS--V------------CRE----------------GYTPFEEVLKQ 197 (314)
T ss_pred CEEEEECCCHHHHHHHHHHhcCCCEEEEECCCccc--c------------ccc----------------ccCCHHHHHHh
Confidence 68999999999999999998889999999975321 0 000 01234 56799
Q ss_pred CCEEEEeccCChHHHHHHHHHHHHhCCCCcEEEecCCC--CCHHHHhcccC
Q 007805 388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTST--IDLNIVGEKTS 436 (589)
Q Consensus 388 aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~--~~~~~~~~~~~ 436 (589)
||+|+.++|-..+.+.-+=++....++++++++..+-+ +.-+.+.+.+.
T Consensus 198 sDiv~l~~Plt~~T~~li~~~~l~~mk~ga~lIN~aRG~~Vde~AL~~aL~ 248 (314)
T PRK06932 198 ADIVTLHCPLTETTQNLINAETLALMKPTAFLINTGRGPLVDEQALLDALE 248 (314)
T ss_pred CCEEEEcCCCChHHhcccCHHHHHhCCCCeEEEECCCccccCHHHHHHHHH
Confidence 99999999987776555556677789999988755544 33445555554
No 275
>PLN03229 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional
Probab=97.70 E-value=0.0019 Score=71.27 Aligned_cols=138 Identities=12% Similarity=0.055 Sum_probs=90.7
Q ss_pred CCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCCcCCCCchhhhhccCCCcccccchhHHHHHHHHHHhCCCcEEEEe
Q 007805 26 NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAV 105 (589)
Q Consensus 26 N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kp~iaav 105 (589)
-++++.-++...+.++.++.. .+-+|-|-=++++++ |.+..+. .......+.+ ..+....+|+|++|
T Consensus 221 G~~~peGyRKAlRlmkLAekf-gLPIVtLVDTpGA~p-G~~AEe~----------Gq~~aIArnl-~amasl~VP~ISVV 287 (762)
T PLN03229 221 GMPTPHGYRKALRMMYYADHH-GFPIVTFIDTPGAYA-DLKSEEL----------GQGEAIAHNL-RTMFGLKVPIVSIV 287 (762)
T ss_pred CCCCHHHHHHHHHHHHHHHHc-CCCEEEEEECCCcCC-CchhHHH----------hHHHHHHHHH-HHHhCCCCCEEEEE
Confidence 477888899999999888754 344455533333332 3322221 0112222334 45778999999999
Q ss_pred CCcccchhhHHhhhcCEEEEeCCceEeccccccCCCCChhhhhhHhhhcCHHHHHHHHHcCCCCCHHHHHHcCCcceecC
Q 007805 106 EGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVT 185 (589)
Q Consensus 106 ~G~a~GgG~~lala~D~~ia~~~a~~~~pe~~~Gl~p~~g~~~~l~~~~G~~~a~~l~ltg~~~~a~~A~~~Glv~~vv~ 185 (589)
-|.|.|||......||++++.+++.|+. +-|.++++..+...--... +...-.++|++.+++|+||+|+|
T Consensus 288 iGeggSGGAlA~g~aD~VlMle~A~~sV------isPEgaAsILwkd~~~A~e----AAe~lkiTa~dL~~lGiiD~IIp 357 (762)
T PLN03229 288 IGEGGSGGALAIGCANKLLMLENAVFYV------ASPEACAAILWKSAKAAPK----AAEKLRITAQELCRLQIADGIIP 357 (762)
T ss_pred eCCcchHHHHHhhcCCEEEEecCCeEEe------cCHHHHHHHHhcCcccHHH----HHHHcCCCHHHHHhCCCCeeecc
Confidence 9999888877777799999999987653 2355554444433222222 34456899999999999999997
Q ss_pred c
Q 007805 186 S 186 (589)
Q Consensus 186 ~ 186 (589)
.
T Consensus 358 E 358 (762)
T PLN03229 358 E 358 (762)
T ss_pred C
Confidence 3
No 276
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=97.69 E-value=0.00014 Score=74.27 Aligned_cols=90 Identities=19% Similarity=0.231 Sum_probs=63.3
Q ss_pred ceEEEEcCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cCCCC
Q 007805 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD 387 (589)
Q Consensus 309 ~kI~IIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~ 387 (589)
+||+|||+|.+|..++..+...|.+|+++|+++++.+.+.. .|. . .....++ +.+++
T Consensus 153 ~kvlViG~G~iG~~~a~~L~~~Ga~V~v~~r~~~~~~~~~~-----------~G~-~----------~~~~~~l~~~l~~ 210 (296)
T PRK08306 153 SNVLVLGFGRTGMTLARTLKALGANVTVGARKSAHLARITE-----------MGL-S----------PFHLSELAEEVGK 210 (296)
T ss_pred CEEEEECCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH-----------cCC-e----------eecHHHHHHHhCC
Confidence 68999999999999999999999999999999876554311 110 0 0001122 55789
Q ss_pred CCEEEEeccCChHHHHHHHHHHHHhCCCCcEEEecCCC
Q 007805 388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTST 425 (589)
Q Consensus 388 aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~ 425 (589)
+|+||.++|... +-++..+.++++.+|++.++.
T Consensus 211 aDiVI~t~p~~~-----i~~~~l~~~~~g~vIIDla~~ 243 (296)
T PRK08306 211 IDIIFNTIPALV-----LTKEVLSKMPPEALIIDLASK 243 (296)
T ss_pred CCEEEECCChhh-----hhHHHHHcCCCCcEEEEEccC
Confidence 999999998321 224445567788888766553
No 277
>PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=97.69 E-value=5.3e-05 Score=80.70 Aligned_cols=100 Identities=15% Similarity=0.163 Sum_probs=71.9
Q ss_pred ceEEEEcCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cCCCC
Q 007805 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD 387 (589)
Q Consensus 309 ~kI~IIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~ 387 (589)
++|||||+|.+|..+|..+...|.+|+.||+.+... . .......++ +.++.
T Consensus 152 ktvGIiG~G~IG~~vA~~~~~fGm~V~~~d~~~~~~----------------~------------~~~~~~~~l~ell~~ 203 (409)
T PRK11790 152 KTLGIVGYGHIGTQLSVLAESLGMRVYFYDIEDKLP----------------L------------GNARQVGSLEELLAQ 203 (409)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEECCCcccc----------------c------------CCceecCCHHHHHhh
Confidence 789999999999999999999999999999863210 0 011223345 66799
Q ss_pred CCEEEEeccCChHHHHHHHHHHHHhCCCCcEEEecCCCCC--HHHHhcccC
Q 007805 388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTID--LNIVGEKTS 436 (589)
Q Consensus 388 aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~--~~~~~~~~~ 436 (589)
||+|+.++|-..+.+.-+=++....++++++++..+-+-. -+.+.+.+.
T Consensus 204 sDiVslh~Plt~~T~~li~~~~l~~mk~ga~lIN~aRG~~vde~aL~~aL~ 254 (409)
T PRK11790 204 SDVVSLHVPETPSTKNMIGAEELALMKPGAILINASRGTVVDIDALADALK 254 (409)
T ss_pred CCEEEEcCCCChHHhhccCHHHHhcCCCCeEEEECCCCcccCHHHHHHHHH
Confidence 9999999998777655554667778999998875544433 344555543
No 278
>PF01343 Peptidase_S49: Peptidase family S49 peptidase classification.; InterPro: IPR002142 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to MEROPS peptidase family S49 (protease IV family, clan S-). The predicted active site serine for members of this family occurs in a transmembrane domain. The domain defines sequences in viruses, archaea, bacteria and plants. These sequences are variously annotated in the different taxonomic groups, examples are: Viruses: capsid protein Archaea: proteinase IV homolog Bacteria: proteinase IV, sohB, SppA, pfaP, putative protease Plants: SppA, protease IV This group also contains proteins classified as non-peptidase homologues that either have been found experimentally to be without peptidase activity, or lack amino acid residues that are believed to be essential for the catalytic activity of peptidases. Related proteins, non-peptidase homologs and unclassified S49 members are also to be found in IPR002810 from INTERPRO.; GO: 0008233 peptidase activity, 0006508 proteolysis; PDB: 3RST_B 3BEZ_D 3BF0_A.
Probab=97.67 E-value=6.4e-05 Score=68.97 Aligned_cols=102 Identities=27% Similarity=0.354 Sum_probs=65.3
Q ss_pred HHhCCCcEEEEeCCcccchhhHHhhhcCEEEEeCCceEeccccc------------cCC---------CCChh-----hh
Q 007805 94 IEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELT------------LGV---------IPGFG-----GT 147 (589)
Q Consensus 94 l~~~~kp~iaav~G~a~GgG~~lala~D~~ia~~~a~~~~pe~~------------~Gl---------~p~~g-----~~ 147 (589)
..+..|||+|.++|.|..+++-|+.+||-+++.+.+.++..-+. +|+ ....+ .+
T Consensus 2 ~~~~~KpV~a~~~~~~~S~~Y~lAs~ad~I~~~p~s~vgsiGv~~~~~~~~~~l~k~GV~~~~~~~g~~K~~~~~~~~~s 81 (154)
T PF01343_consen 2 FKASGKPVVAYAEGYAASGAYYLASAADEIYANPSSSVGSIGVSAERLFFKGLLEKLGVKVEVVRSGEYKSAGFPRDPMS 81 (154)
T ss_dssp HHHTT--EEEEEEEEEETHHHHHHTTSSEEEE-TT-EEE---EEEEEEE-HHHHHHTT-EEEEEESSTTCCCCCTTSS--
T ss_pred ccccCCeEEEEECCcchhHHHHHHHcCCEEEecCCCEEEEeChhhccccHHHHHHHCCCeEEEEecCccccccCcCCCCC
Confidence 35789999999999999999999999999999999877655443 232 11111 00
Q ss_pred ----hhH-----------------hhhcCHHHHHHHHHcCCCCCHHHHHHcCCcceecCchHHHHHHHHH
Q 007805 148 ----QRL-----------------PRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLW 196 (589)
Q Consensus 148 ----~~l-----------------~~~~G~~~a~~l~ltg~~~~a~~A~~~Glv~~vv~~~~l~~~a~~~ 196 (589)
..+ .|-+... ..+-+..|..+++++|++.||||++-..+++...+.+.
T Consensus 82 ~~~r~~~~~~l~~~~~~f~~~Va~~R~~~~~-~v~~~~~~~~~~~~~A~~~GLiD~i~~~~~~~~~l~~~ 150 (154)
T PF01343_consen 82 EEERENLQELLDELYDQFVNDVAEGRGLSPD-DVEEIADGGVFTAQQALELGLIDEIGTFDEAIARLAKL 150 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTS-HH-HHHCHHCCHEEEHHHHHHTTSSSEETSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHccCCCHH-HHHHHHhhccccHHHHHHcCchhhcCCHHHHHHHHHHH
Confidence 001 1111112 22336799999999999999999998887776655543
No 279
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=97.67 E-value=0.00044 Score=66.29 Aligned_cols=39 Identities=23% Similarity=0.378 Sum_probs=35.9
Q ss_pred ceEEEEcCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHH
Q 007805 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKG 347 (589)
Q Consensus 309 ~kI~IIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~ 347 (589)
++|+|+|+|.||..+|..|.+.|++|+++|+++++++..
T Consensus 29 k~v~I~G~G~vG~~~A~~L~~~G~~Vvv~D~~~~~~~~~ 67 (200)
T cd01075 29 KTVAVQGLGKVGYKLAEHLLEEGAKLIVADINEEAVARA 67 (200)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHH
Confidence 679999999999999999999999999999998876654
No 280
>TIGR01759 MalateDH-SF1 malate dehydrogenase. This model represents a family of malate dehydrogenases in bacteria and eukaryotes which utilize either NAD or NADP depending on the species and context. MDH interconverts malate and oxaloacetate and is a part of the citric acid cycle as well as the C4 cycle in certain photosynthetic organisms.
Probab=97.67 E-value=0.0001 Score=75.85 Aligned_cols=102 Identities=17% Similarity=0.101 Sum_probs=66.0
Q ss_pred ceEEEEcC-CCCcHHHHHHHHhCCC-------eEEEEeCChH--HHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccc
Q 007805 309 RKVAVIGG-GLMGSGIATAHILNNI-------YVVLKEVNSE--YLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKG 378 (589)
Q Consensus 309 ~kI~IIG~-G~mG~~iA~~l~~~G~-------~V~~~d~~~~--~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~ 378 (589)
-||+|||+ |.+|+++|..+...|. +++++|+++. .++.-...+.+.... .......
T Consensus 4 ~KV~IIGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~Di~~~~~~a~g~a~Dl~~~~~~--------------~~~~~~i 69 (323)
T TIGR01759 4 VRVAVTGAAGQIGYSLLFRIASGELFGKDQPVVLHLLDIPPAMKALEGVAMELEDCAFP--------------LLAGVVA 69 (323)
T ss_pred eEEEEECCCcHHHHHHHHHHHhCCcccCCCccEEEEEecCCcccccchHHHHHhhcccc--------------ccCCcEE
Confidence 57999998 9999999999998885 7999999752 232211111111000 0011112
Q ss_pred -cCCccCCCCCCEEEEec--cC------------ChHHHHHHHHHHHHhCCCCcEEEecCC
Q 007805 379 -VLDYSEFKDVDMVIEAV--IE------------SVPLKQKIFSELEKACPPHCILATNTS 424 (589)
Q Consensus 379 -~~~~~~~~~aDlVIeav--pe------------~~~~k~~v~~~l~~~~~~~~ii~s~ts 424 (589)
..+++++++||+||.+. |. +..+.+++..++.++.+++++++..|.
T Consensus 70 ~~~~~~~~~daDvVVitAG~~~k~g~tR~dll~~Na~i~~~i~~~i~~~~~~~~iiivvsN 130 (323)
T TIGR01759 70 TTDPEEAFKDVDAALLVGAFPRKPGMERADLLSKNGKIFKEQGKALNKVAKKDVKVLVVGN 130 (323)
T ss_pred ecChHHHhCCCCEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEeCC
Confidence 35568999999999876 21 234556677778888886777765553
No 281
>PRK14513 ATP-dependent Clp protease proteolytic subunit; Provisional
Probab=97.66 E-value=0.00064 Score=64.67 Aligned_cols=137 Identities=17% Similarity=0.232 Sum_probs=96.0
Q ss_pred CCCCHHHHHHHHHHHHHHhcCCCceE--EEEEcCCCCCcCCCCchhhhhccCCCcccccchhHHHHHHHHHHhCCCcEEE
Q 007805 26 NALAIPIVAGLKDKFEEATSRDDVKA--IVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVA 103 (589)
Q Consensus 26 N~l~~~~~~~l~~~l~~~~~~~~v~~--vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kp~ia 103 (589)
-.++.++-..+...|..++.++.-+- +-|.+.| +|+.. ...++ +.|...+-||..
T Consensus 34 ~~i~~~~a~~ii~~Ll~L~~~~~~~~I~l~INSpG------G~v~~----------------GlaIy-d~m~~~~~~V~T 90 (201)
T PRK14513 34 TPIESQMANTIVAQLLLLDSQNPEQEIQMYINCPG------GEVYA----------------GLAIY-DTMRYIKAPVST 90 (201)
T ss_pred CEEcHHHHHHHHHHHHHhhccCCCCCEEEEEECCC------Cchhh----------------HHHHH-HHHHhcCCCEEE
Confidence 45888899999888888876433222 2234433 33221 23556 678899999999
Q ss_pred EeCCcccchhhHHhhhcCE--EEEeCCceEeccccccCCCCChhhhh-----------------hHhhhcC--HHHHHHH
Q 007805 104 AVEGLALGGGLELAMGCHA--RIAAPKTQLGLPELTLGVIPGFGGTQ-----------------RLPRLVG--LSKAIEM 162 (589)
Q Consensus 104 av~G~a~GgG~~lala~D~--~ia~~~a~~~~pe~~~Gl~p~~g~~~-----------------~l~~~~G--~~~a~~l 162 (589)
.+.|.|.+.|.-|++++|- |++.++|++-+....-|.. +..+. .+.+.-| .....++
T Consensus 91 i~~G~AaS~As~il~aG~kgkR~~~pna~iMIHqp~~~~~--G~a~di~~~a~el~~~~~~l~~iya~~Tg~~~~~I~~~ 168 (201)
T PRK14513 91 ICVGIAMSMGSVLLMAGDKGKRMALPNSRIMIHQGSAGFR--GNTPDLEVQAKEVLFLRDTLVDIYHRHTDLPHEKLLRD 168 (201)
T ss_pred EEEeeehhhHHHHHhcCCCCcEEecCCeEEEEecCCCCCC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHH
Confidence 9999999999999999996 8999999988766654431 11111 1122233 3445566
Q ss_pred HHcCCCCCHHHHHHcCCcceecCch
Q 007805 163 MLLSKSITSEEGWKLGLIDAVVTSE 187 (589)
Q Consensus 163 ~ltg~~~~a~~A~~~Glv~~vv~~~ 187 (589)
+-....++|+||+++||||+|+++.
T Consensus 169 ~~rd~~msa~EA~eyGliD~I~~~~ 193 (201)
T PRK14513 169 MERDYFMSPEEAKAYGLIDSVIEPT 193 (201)
T ss_pred hccCcccCHHHHHHcCCCcEEeccC
Confidence 7777889999999999999998653
No 282
>PRK06487 glycerate dehydrogenase; Provisional
Probab=97.66 E-value=0.00017 Score=74.34 Aligned_cols=97 Identities=11% Similarity=0.103 Sum_probs=71.0
Q ss_pred ceEEEEcCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cCCCC
Q 007805 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD 387 (589)
Q Consensus 309 ~kI~IIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~ 387 (589)
++|||||.|.+|..+|..+...|.+|+.||+..... . .. ..++ +.++.
T Consensus 149 ktvgIiG~G~IG~~vA~~l~~fgm~V~~~~~~~~~~-~-----------------------------~~-~~~l~ell~~ 197 (317)
T PRK06487 149 KTLGLLGHGELGGAVARLAEAFGMRVLIGQLPGRPA-R-----------------------------PD-RLPLDELLPQ 197 (317)
T ss_pred CEEEEECCCHHHHHHHHHHhhCCCEEEEECCCCCcc-c-----------------------------cc-ccCHHHHHHh
Confidence 689999999999999999998899999999863210 0 00 1133 56799
Q ss_pred CCEEEEeccCChHHHHHHHHHHHHhCCCCcEEEecCCCCC--HHHHhcccC
Q 007805 388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTID--LNIVGEKTS 436 (589)
Q Consensus 388 aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~--~~~~~~~~~ 436 (589)
||+|+.++|-..+.+.-+=++..+.++++++++..+-+-. -+.+.+.+.
T Consensus 198 sDiv~l~lPlt~~T~~li~~~~~~~mk~ga~lIN~aRG~vVde~AL~~AL~ 248 (317)
T PRK06487 198 VDALTLHCPLTEHTRHLIGARELALMKPGALLINTARGGLVDEQALADALR 248 (317)
T ss_pred CCEEEECCCCChHHhcCcCHHHHhcCCCCeEEEECCCccccCHHHHHHHHH
Confidence 9999999998887665555667788999998875554433 345555554
No 283
>PLN00112 malate dehydrogenase (NADP); Provisional
Probab=97.66 E-value=0.00032 Score=74.72 Aligned_cols=102 Identities=16% Similarity=0.158 Sum_probs=69.6
Q ss_pred cceEEEEcC-CCCcHHHHHHHHhC-------CC--eEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhccc
Q 007805 308 VRKVAVIGG-GLMGSGIATAHILN-------NI--YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLK 377 (589)
Q Consensus 308 ~~kI~IIG~-G~mG~~iA~~l~~~-------G~--~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~ 377 (589)
.-||+|||+ |.+|.++|..++.. |+ +++++|++++.++.-.-.++.....+ +..+.
T Consensus 100 ~~KV~IIGAaG~VG~~~A~~L~~~~v~g~~~~i~~eLvliD~~~~~a~G~amDL~daa~~~--------------~~~v~ 165 (444)
T PLN00112 100 LINVAVSGAAGMISNHLLFKLASGEVFGPDQPIALKLLGSERSKQALEGVAMELEDSLYPL--------------LREVS 165 (444)
T ss_pred CeEEEEECCCcHHHHHHHHHHHhcccccCCCCcccEEEEEcCCcchhHHHHHHHHHhhhhh--------------cCceE
Confidence 368999999 99999999999988 65 89999999988765433333222111 11233
Q ss_pred -ccCCccCCCCCCEEEEec--cC------------ChHHHHHHHHHHHHhCCCCcEEEecC
Q 007805 378 -GVLDYSEFKDVDMVIEAV--IE------------SVPLKQKIFSELEKACPPHCILATNT 423 (589)
Q Consensus 378 -~~~~~~~~~~aDlVIeav--pe------------~~~~k~~v~~~l~~~~~~~~ii~s~t 423 (589)
.+.+++++++||+||.+. |. +..+.+++..+|.++..++++++..+
T Consensus 166 i~~~~ye~~kdaDiVVitAG~prkpG~tR~dLl~~N~~I~k~i~~~I~~~a~p~~ivIVVs 226 (444)
T PLN00112 166 IGIDPYEVFQDAEWALLIGAKPRGPGMERADLLDINGQIFAEQGKALNEVASRNVKVIVVG 226 (444)
T ss_pred EecCCHHHhCcCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEcC
Confidence 245669999999999876 22 23345555566777566777766554
No 284
>PRK05654 acetyl-CoA carboxylase subunit beta; Validated
Probab=97.60 E-value=0.0032 Score=63.52 Aligned_cols=162 Identities=15% Similarity=0.152 Sum_probs=103.3
Q ss_pred CcEEEEEeCCCC--CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCCcCCCCchhhhhccCCCcccccchhHHHHH
Q 007805 13 DGVAIITLINPP--VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELV 90 (589)
Q Consensus 13 ~~v~~i~l~~p~--~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~ 90 (589)
+.-..|.-|++. .-+++...-+.+.++++.+... .+-+|.|.-.|+ +-+++ .. .....+.+.. ..+
T Consensus 120 G~~V~v~a~D~~f~gGS~g~~~~eKi~r~~e~A~~~-~lPlV~l~dsgG-----armqE---gi--~sL~~~ak~~-~a~ 187 (292)
T PRK05654 120 GMPVVLAVMDFSFMGGSMGSVVGEKIVRAVERAIEE-KCPLVIFSASGG-----ARMQE---GL--LSLMQMAKTS-AAL 187 (292)
T ss_pred CEEEEEEEEecccccCCccHHHHHHHHHHHHHHHHc-CCCEEEEEcCCC-----cchhh---hh--hHHHhHHHHH-HHH
Confidence 333444555664 4899999999999999998765 466777765443 22221 00 0001111111 222
Q ss_pred HHHHHhCCCcEEEEeCCcccchhhH-HhhhcCEEEEeCCceEeccccccCCCCChhhhhhHhhhcCHHHHHHHHHcCCCC
Q 007805 91 VNLIEDCKKPIVAAVEGLALGGGLE-LAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSI 169 (589)
Q Consensus 91 ~~~l~~~~kp~iaav~G~a~GgG~~-lala~D~~ia~~~a~~~~pe~~~Gl~p~~g~~~~l~~~~G~~~a~~l~ltg~~~ 169 (589)
.++.....|.|+++-|.|+||+.. .++.+|+++|.++|.+++.-.+ .+...+|.. + .-+.-
T Consensus 188 -~~~~~a~vP~IsVv~gpt~GG~aas~a~~~D~iia~p~A~ig~aGpr-----------vie~~~~e~----l--pe~~~ 249 (292)
T PRK05654 188 -KRLSEAGLPYISVLTDPTTGGVSASFAMLGDIIIAEPKALIGFAGPR-----------VIEQTVREK----L--PEGFQ 249 (292)
T ss_pred -HHHHcCCCCEEEEEeCCCchHHHHHHHHcCCEEEEecCcEEEecCHH-----------HHHhhhhhh----h--hhhhc
Confidence 345667899999999999999764 5778999999999877763221 111111111 0 11123
Q ss_pred CHHHHHHcCCcceecCchHHHHHHHHHHHHHHhcC
Q 007805 170 TSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARR 204 (589)
Q Consensus 170 ~a~~A~~~Glv~~vv~~~~l~~~a~~~a~~la~~~ 204 (589)
+++-+.+.|+||.|+++.++.....++.+.+...+
T Consensus 250 ~ae~~~~~G~vD~Vv~~~e~r~~l~~~L~~~~~~~ 284 (292)
T PRK05654 250 RAEFLLEHGAIDMIVHRRELRDTLASLLALHTKQP 284 (292)
T ss_pred CHHHHHhCCCCcEEECHHHHHHHHHHHHHHHhcCC
Confidence 67777889999999999999988888877665443
No 285
>PRK05225 ketol-acid reductoisomerase; Validated
Probab=97.60 E-value=0.00025 Score=74.48 Aligned_cols=185 Identities=12% Similarity=0.074 Sum_probs=107.8
Q ss_pred ceEEEEcCCCCcHHHHHHHHhCCCeEE------EEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc
Q 007805 309 RKVAVIGGGLMGSGIATAHILNNIYVV------LKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY 382 (589)
Q Consensus 309 ~kI~IIG~G~mG~~iA~~l~~~G~~V~------~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~ 382 (589)
++|+|||.|.+|.+-|..+...|++|+ .+|.+.+.-+++. +.| +...+..
T Consensus 37 KtIaIIGyGSqG~AqAlNLrdSGvnVvvglr~~~id~~~~s~~kA~-----------~dG-------------F~v~~~~ 92 (487)
T PRK05225 37 KKIVIVGCGAQGLNQGLNMRDSGLDISYALRKEAIAEKRASWRKAT-----------ENG-------------FKVGTYE 92 (487)
T ss_pred CEEEEEccCHHHHHHhCCCccccceeEEeccccccccccchHHHHH-----------hcC-------------CccCCHH
Confidence 689999999999999999999999998 4444444433331 112 2222222
Q ss_pred cCCCCCCEEEEeccCChHHHHHHHHHHHHhCCCCcEEEecCCCCCHHHHhcccCCCCcEEEecCCCCC----------CC
Q 007805 383 SEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPA----------HV 452 (589)
Q Consensus 383 ~~~~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~~~~~~~~~~~r~ig~h~~~p~----------~~ 452 (589)
++++.||+|+..+|+. . ...++.++.+++++++++.-+. +..+....-..+....++-+-|-.|- .-
T Consensus 93 Ea~~~ADvVviLlPDt-~-q~~v~~~i~p~LK~Ga~L~fsH-GFni~~~~i~~~~dvdVimvAPKgpG~~vR~~y~~G~G 169 (487)
T PRK05225 93 ELIPQADLVINLTPDK-Q-HSDVVRAVQPLMKQGAALGYSH-GFNIVEVGEQIRKDITVVMVAPKCPGTEVREEYKRGFG 169 (487)
T ss_pred HHHHhCCEEEEcCChH-H-HHHHHHHHHhhCCCCCEEEecC-CceeeeCceeCCCCCcEEEECCCCCCchHHHHHhcCCC
Confidence 7789999999999966 3 7788899999999999885322 22222111111111223333332221 11
Q ss_pred CCeeeEec-CCCCCHHHHHHHHHHHHHcCCe---eEEE--c-C-CCCccccc-ccHHHH---HHHH--HHHHcCCCHHHH
Q 007805 453 MPLLEIVR-TERTSAQVILDLMTVGKIIKKV---PVVV--G-N-CTGFAVNR-AFFPYS---QSAR--LLVSLGVDVFRI 518 (589)
Q Consensus 453 ~~lveiv~-~~~t~~e~~~~~~~l~~~lG~~---~v~v--~-d-~~Gfi~nR-i~~~~~---~Ea~--~l~~~Gv~~~~i 518 (589)
.|...-|. -...+-.+.+.+..+...+|.. ++.. . + ..-....| +++..+ .++. .++++|++|++.
T Consensus 170 vp~l~AV~~~qD~~g~a~~~ala~a~~iG~~ragv~~ttf~~E~~sDL~GEq~vLcG~~~~~~~~~Fe~lve~G~~pe~A 249 (487)
T PRK05225 170 VPTLIAVHPENDPKGEGMAIAKAWAAATGGHRAGVLESSFVAEVKSDLMGEQTILCGMLQAGSLLCFDKLVAEGTDPAYA 249 (487)
T ss_pred ceEEEEEeecCCCCchHHHHHHHHHHHhCCCccceeecchHHHHhhcchhhHHHHHhHHHHHHHHHHHHHHHcCCCHHHH
Confidence 12222222 1344566788899999999976 3322 1 1 11222233 333333 2332 677889988876
Q ss_pred HH
Q 007805 519 DS 520 (589)
Q Consensus 519 D~ 520 (589)
-.
T Consensus 250 ~k 251 (487)
T PRK05225 250 EK 251 (487)
T ss_pred HH
Confidence 43
No 286
>PRK04148 hypothetical protein; Provisional
Probab=97.59 E-value=0.0013 Score=58.04 Aligned_cols=96 Identities=17% Similarity=0.131 Sum_probs=68.3
Q ss_pred ceEEEEcCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCccCCCCC
Q 007805 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKDV 388 (589)
Q Consensus 309 ~kI~IIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~a 388 (589)
++|.+||+| -|.++|..|++.|++|+.+|++++..+.+.+. + .+ ...+. -+..+.+.-++|
T Consensus 18 ~kileIG~G-fG~~vA~~L~~~G~~ViaIDi~~~aV~~a~~~-----------~-~~-----~v~dD-lf~p~~~~y~~a 78 (134)
T PRK04148 18 KKIVELGIG-FYFKVAKKLKESGFDVIVIDINEKAVEKAKKL-----------G-LN-----AFVDD-LFNPNLEIYKNA 78 (134)
T ss_pred CEEEEEEec-CCHHHHHHHHHCCCEEEEEECCHHHHHHHHHh-----------C-Ce-----EEECc-CCCCCHHHHhcC
Confidence 579999999 89999999999999999999999987776331 1 00 00000 012233556899
Q ss_pred CEEEEeccCChHHHHHHHHHHHHhCCCCcEEEecCCC
Q 007805 389 DMVIEAVIESVPLKQKIFSELEKACPPHCILATNTST 425 (589)
Q Consensus 389 DlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~ 425 (589)
|+|...-| +.-.+.-+.+|++.+.-+.+|..-+.-
T Consensus 79 ~liysirp--p~el~~~~~~la~~~~~~~~i~~l~~e 113 (134)
T PRK04148 79 KLIYSIRP--PRDLQPFILELAKKINVPLIIKPLSGE 113 (134)
T ss_pred CEEEEeCC--CHHHHHHHHHHHHHcCCCEEEEcCCCC
Confidence 99999887 444556667788888888887654443
No 287
>PRK15438 erythronate-4-phosphate dehydrogenase PdxB; Provisional
Probab=97.57 E-value=6e-05 Score=78.84 Aligned_cols=98 Identities=13% Similarity=0.053 Sum_probs=65.9
Q ss_pred ceEEEEcCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cCCCC
Q 007805 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD 387 (589)
Q Consensus 309 ~kI~IIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~ 387 (589)
++|||||.|.||+.+|..+...|.+|.+||+.... . + ... ...++ +.+++
T Consensus 117 ktvGIIG~G~IG~~vA~~l~a~G~~V~~~dp~~~~--~---------------~-----------~~~-~~~~L~ell~~ 167 (378)
T PRK15438 117 RTVGIVGVGNVGRRLQARLEALGIKTLLCDPPRAD--R---------------G-----------DEG-DFRSLDELVQE 167 (378)
T ss_pred CEEEEECcCHHHHHHHHHHHHCCCEEEEECCcccc--c---------------c-----------ccc-ccCCHHHHHhh
Confidence 68999999999999999999999999999964221 0 0 000 11244 55789
Q ss_pred CCEEEEeccCChH----HHHHHHHHHHHhCCCCcEEEecCCCCC--HHHHhccc
Q 007805 388 VDMVIEAVIESVP----LKQKIFSELEKACPPHCILATNTSTID--LNIVGEKT 435 (589)
Q Consensus 388 aDlVIeavpe~~~----~k~~v~~~l~~~~~~~~ii~s~ts~~~--~~~~~~~~ 435 (589)
||+|+..+|-..+ ...-+=++....++++++++..+-+-. -+.+.+.+
T Consensus 168 sDiI~lh~PLt~~g~~~T~~li~~~~l~~mk~gailIN~aRG~vVDe~AL~~aL 221 (378)
T PRK15438 168 ADILTFHTPLFKDGPYKTLHLADEKLIRSLKPGAILINACRGAVVDNTALLTCL 221 (378)
T ss_pred CCEEEEeCCCCCCcccccccccCHHHHhcCCCCcEEEECCCchhcCHHHHHHHH
Confidence 9999999985442 222222456677899998875554433 33454444
No 288
>TIGR01772 MDH_euk_gproteo malate dehydrogenase, NAD-dependent. Although malate dehydrogenases have in some cases been mistaken for lactate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of lactate dehydrogenases.
Probab=97.56 E-value=0.00021 Score=73.11 Aligned_cols=98 Identities=17% Similarity=0.283 Sum_probs=62.4
Q ss_pred eEEEEcC-CCCcHHHHHHHHhCCC--eEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccc-c-CC--c
Q 007805 310 KVAVIGG-GLMGSGIATAHILNNI--YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKG-V-LD--Y 382 (589)
Q Consensus 310 kI~IIG~-G~mG~~iA~~l~~~G~--~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~-~-~~--~ 382 (589)
||+|||+ |.+|+++|..++..++ ++.++|+++ ....+.. +.... ....+.. + ++ +
T Consensus 1 KV~IiGaaG~VG~~~a~~l~~~~~~~elvL~Di~~-a~g~a~D---------L~~~~--------~~~~i~~~~~~~~~~ 62 (312)
T TIGR01772 1 KVAVLGAAGGIGQPLSLLLKLQPYVSELSLYDIAG-AAGVAAD---------LSHIP--------TAASVKGFSGEEGLE 62 (312)
T ss_pred CEEEECCCCHHHHHHHHHHHhCCCCcEEEEecCCC-CcEEEch---------hhcCC--------cCceEEEecCCCchH
Confidence 6999999 9999999999998876 899999987 2111100 11110 0012333 2 22 5
Q ss_pred cCCCCCCEEEEeccC--------------ChHHHHHHHHHHHHhCCCCcEEEecCCCC
Q 007805 383 SEFKDVDMVIEAVIE--------------SVPLKQKIFSELEKACPPHCILATNTSTI 426 (589)
Q Consensus 383 ~~~~~aDlVIeavpe--------------~~~~k~~v~~~l~~~~~~~~ii~s~ts~~ 426 (589)
+++++||+||.+.-- +..+.+++..+|.++. |+++++..|...
T Consensus 63 ~~~~daDivvitaG~~~~~g~~R~dll~~N~~I~~~i~~~i~~~~-p~~iiivvsNPv 119 (312)
T TIGR01772 63 NALKGADVVVIPAGVPRKPGMTRDDLFNVNAGIVKDLVAAVAESC-PKAMILVITNPV 119 (312)
T ss_pred HHcCCCCEEEEeCCCCCCCCccHHHHHHHhHHHHHHHHHHHHHhC-CCeEEEEecCch
Confidence 899999999987632 3345556666677775 566665444333
No 289
>KOG2666 consensus UDP-glucose/GDP-mannose dehydrogenase [Carbohydrate transport and metabolism; Signal transduction mechanisms]
Probab=97.56 E-value=0.0005 Score=67.81 Aligned_cols=198 Identities=19% Similarity=0.242 Sum_probs=115.6
Q ss_pred cceEEEEcCCCCcHHHHHHHHhC--CCeEEEEeCChHHHHHHHHH----HHHHHHhhHhcCCCCHHHHHHHhhcccccCC
Q 007805 308 VRKVAVIGGGLMGSGIATAHILN--NIYVVLKEVNSEYLLKGIKT----IEANVRGLVTRGKLTQDKANNALKMLKGVLD 381 (589)
Q Consensus 308 ~~kI~IIG~G~mG~~iA~~l~~~--G~~V~~~d~~~~~~~~~~~~----~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~ 381 (589)
|.||+-||+|..|++-...++.. ..+|+++|.+..++...... ++..+++.++ ...-.++-+++|
T Consensus 1 ~~kiccigagyvggptcavia~kcp~i~vtvvd~s~~ri~~wnsd~lpiyepgldevv~---------~crgknlffstd 71 (481)
T KOG2666|consen 1 MVKICCIGAGYVGGPTCAVIALKCPDIEVTVVDISVPRINAWNSDKLPIYEPGLDEVVK---------QCRGKNLFFSTD 71 (481)
T ss_pred CceEEEecCcccCCcchheeeecCCceEEEEEecCchHhhcccCCCCcccCCCHHHHHH---------HhcCCceeeecc
Confidence 56899999999999877666543 46899999999887664321 1111111111 111134566778
Q ss_pred c-cCCCCCCEEEEeccC-------------ChHHHHHHHHHHHHhCCCCcEEEecCCCCCHH---HHhcccCCCCcEEEe
Q 007805 382 Y-SEFKDVDMVIEAVIE-------------SVPLKQKIFSELEKACPPHCILATNTSTIDLN---IVGEKTSSQDRIIGA 444 (589)
Q Consensus 382 ~-~~~~~aDlVIeavpe-------------~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~---~~~~~~~~~~r~ig~ 444 (589)
. .+++++|+|+.+|.. |+......-+.|.+....+.|++ -.|++|+. .+...+.+... |+
T Consensus 72 iekai~eadlvfisvntptkt~g~gkg~aadlky~es~ar~ia~~s~~~kivv-ekstvpv~aaesi~~il~~n~~--~i 148 (481)
T KOG2666|consen 72 IEKAIKEADLVFISVNTPTKTYGLGKGKAADLKYWESAARMIADVSVSDKIVV-EKSTVPVKAAESIEKILNHNSK--GI 148 (481)
T ss_pred hHHHhhhcceEEEEecCCcccccCCCCcccchhHHHHHHHHHHHhccCCeEEE-eeccccchHHHHHHHHHhcCCC--Cc
Confidence 7 679999999999843 44455566667888887887765 45666654 23333433322 33
Q ss_pred cC------------------CCCCCCCCeeeEecCCCCCH--HHHHHHHHHHHHcC-CeeEEE-----cCCCCccccccc
Q 007805 445 HF------------------FSPAHVMPLLEIVRTERTSA--QVILDLMTVGKIIK-KVPVVV-----GNCTGFAVNRAF 498 (589)
Q Consensus 445 h~------------------~~p~~~~~lveiv~~~~t~~--e~~~~~~~l~~~lG-~~~v~v-----~d~~Gfi~nRi~ 498 (589)
|| +||-.+ ++.|..|.+ .+++.+..+++.+- ..-+.+ .+.....+|-++
T Consensus 149 ~fqilsnpeflaegtaikdl~npdrv-----ligg~etpeg~~av~~l~~vyehwvp~~~iittntwsselsklaanafl 223 (481)
T KOG2666|consen 149 KFQILSNPEFLAEGTAIKDLFNPDRV-----LIGGRETPEGFQAVQALKDVYEHWVPREQIITTNTWSSELSKLAANAFL 223 (481)
T ss_pred eeEeccChHHhcccchhhhhcCCceE-----EECCCCChhHHHHHHHHHHHHHhhCcccceeeccccHHHHHHHHHHHHH
Confidence 33 455443 677776654 34555555555432 222222 233344455544
Q ss_pred HH---HHHHHHHHHHc-CCCHHHHHHHH
Q 007805 499 FP---YSQSARLLVSL-GVDVFRIDSAI 522 (589)
Q Consensus 499 ~~---~~~Ea~~l~~~-Gv~~~~iD~~~ 522 (589)
.- -+|..-.+.|. |.+.+++-.++
T Consensus 224 aqrissins~salceatgadv~eva~av 251 (481)
T KOG2666|consen 224 AQRISSINSMSALCEATGADVSEVAYAV 251 (481)
T ss_pred HHHHhhhHHHHHHHHhcCCCHHHHHHHh
Confidence 32 23333344444 88888887776
No 290
>PRK06141 ornithine cyclodeaminase; Validated
Probab=97.55 E-value=0.00019 Score=73.93 Aligned_cols=92 Identities=17% Similarity=0.138 Sum_probs=61.8
Q ss_pred ceEEEEcCCCCcHHHHHHHHh-C-CCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cCC
Q 007805 309 RKVAVIGGGLMGSGIATAHIL-N-NIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEF 385 (589)
Q Consensus 309 ~kI~IIG~G~mG~~iA~~l~~-~-G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~ 385 (589)
++|+|||+|.||..++..+.. . ..+|++|+|++++.+...++++. .|. .+....+. +++
T Consensus 126 ~~v~iiG~G~~a~~~~~al~~~~~~~~V~V~~Rs~~~a~~~a~~~~~-------~g~-----------~~~~~~~~~~av 187 (314)
T PRK06141 126 SRLLVVGTGRLASLLALAHASVRPIKQVRVWGRDPAKAEALAAELRA-------QGF-----------DAEVVTDLEAAV 187 (314)
T ss_pred ceEEEECCcHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHHh-------cCC-----------ceEEeCCHHHHH
Confidence 679999999999999986654 4 46899999999987775443221 110 12334455 578
Q ss_pred CCCCEEEEeccCChHHHHHHHHHHHHhCCCCcEEEecCC
Q 007805 386 KDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTS 424 (589)
Q Consensus 386 ~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts 424 (589)
++||+||.|.|... .++.. +.++++++|...++
T Consensus 188 ~~aDIVi~aT~s~~----pvl~~--~~l~~g~~i~~ig~ 220 (314)
T PRK06141 188 RQADIISCATLSTE----PLVRG--EWLKPGTHLDLVGN 220 (314)
T ss_pred hcCCEEEEeeCCCC----CEecH--HHcCCCCEEEeeCC
Confidence 89999998887542 22221 45678886655444
No 291
>TIGR01757 Malate-DH_plant malate dehydrogenase, NADP-dependent. This model represents the NADP-dependent malate dehydrogenase found in plants, mosses and green algae and localized to the chloroplast. Malate dehydrogenase converts oxaloacetate into malate, a critical step in the C4 cycle which allows circumvention of the effects of photorespiration. Malate is subsequenctly transported from the chloroplast to the cytoplasm (and then to the bundle sheath cells in C4 plants). The plant and moss enzymes are light regulated via cysteine disulfide bonds. The enzyme from Sorghum has been crystallized.
Probab=97.55 E-value=0.00057 Score=71.68 Aligned_cols=101 Identities=18% Similarity=0.190 Sum_probs=66.5
Q ss_pred ceEEEEcC-CCCcHHHHHHHHhCCC-------eEEEE--eCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhccc-
Q 007805 309 RKVAVIGG-GLMGSGIATAHILNNI-------YVVLK--EVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLK- 377 (589)
Q Consensus 309 ~kI~IIG~-G~mG~~iA~~l~~~G~-------~V~~~--d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~- 377 (589)
-||+|||+ |.+|.++|..++..|. .++++ |++++.++.-.-.+...... .+..+.
T Consensus 45 ~KV~IIGAaG~VG~~~A~~l~~~~l~~~~~ei~L~L~diD~~~~~a~g~a~DL~d~a~~--------------~~~~v~i 110 (387)
T TIGR01757 45 VNVAVSGAAGMISNHLLFMLASGEVFGQDQPIALKLLGSERSKEALEGVAMELEDSLYP--------------LLREVSI 110 (387)
T ss_pred eEEEEECCCcHHHHHHHHHHHhccccCCCCceEEEEeccCccchhhhHHHHHHHHhhhh--------------hcCceEE
Confidence 68999999 9999999999998875 24455 88887765533333322110 011233
Q ss_pred ccCCccCCCCCCEEEEec--cC------------ChHHHHHHHHHHHHhCCCCcEEEecC
Q 007805 378 GVLDYSEFKDVDMVIEAV--IE------------SVPLKQKIFSELEKACPPHCILATNT 423 (589)
Q Consensus 378 ~~~~~~~~~~aDlVIeav--pe------------~~~~k~~v~~~l~~~~~~~~ii~s~t 423 (589)
.+.+++++++||+||.+. |. +..+.+++...|.++.+++++++..|
T Consensus 111 ~~~~y~~~kdaDIVVitAG~prkpg~tR~dll~~N~~I~k~i~~~I~~~a~~~~iviVVs 170 (387)
T TIGR01757 111 GIDPYEVFEDADWALLIGAKPRGPGMERADLLDINGQIFADQGKALNAVASKNCKVLVVG 170 (387)
T ss_pred ecCCHHHhCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEcC
Confidence 235568999999999865 22 23345566667788787888776554
No 292
>PRK14188 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.52 E-value=0.00018 Score=72.63 Aligned_cols=72 Identities=19% Similarity=0.233 Sum_probs=55.3
Q ss_pred ceEEEEc-CCCCcHHHHHHHHhCCCeEEEEe-CChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCccCCC
Q 007805 309 RKVAVIG-GGLMGSGIATAHILNNIYVVLKE-VNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFK 386 (589)
Q Consensus 309 ~kI~IIG-~G~mG~~iA~~l~~~G~~V~~~d-~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~ 386 (589)
++|+||| .|.||.+||..|.++|++|++|+ ++++ ++ +.++
T Consensus 159 k~V~viGrs~~mG~PmA~~L~~~g~tVtv~~~rT~~-l~-------------------------------------e~~~ 200 (296)
T PRK14188 159 LNAVVIGRSNLVGKPMAQLLLAANATVTIAHSRTRD-LP-------------------------------------AVCR 200 (296)
T ss_pred CEEEEEcCCcchHHHHHHHHHhCCCEEEEECCCCCC-HH-------------------------------------HHHh
Confidence 6899999 99999999999999999999995 6542 11 3357
Q ss_pred CCCEEEEeccCChHHHHHHHHHHHHhCCCCcEEEecCCC
Q 007805 387 DVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTST 425 (589)
Q Consensus 387 ~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~ 425 (589)
.||+||.|++....+... .+++++++++.+..
T Consensus 201 ~ADIVIsavg~~~~v~~~-------~lk~GavVIDvGin 232 (296)
T PRK14188 201 RADILVAAVGRPEMVKGD-------WIKPGATVIDVGIN 232 (296)
T ss_pred cCCEEEEecCChhhcchh-------eecCCCEEEEcCCc
Confidence 899999999854433222 27899998876543
No 293
>KOG2653 consensus 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]
Probab=97.51 E-value=0.0034 Score=63.17 Aligned_cols=191 Identities=15% Similarity=0.112 Sum_probs=120.7
Q ss_pred cceEEEEcCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc----c
Q 007805 308 VRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY----S 383 (589)
Q Consensus 308 ~~kI~IIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~----~ 383 (589)
...|+.||++.||..++...+.+|+.|.+|+|+.++.+..+++-. +| ..+....++ .
T Consensus 6 ~~digLiGLaVMGqnLiLN~~d~Gf~v~~yNRT~skvD~flanea--------k~-----------~~i~ga~S~ed~v~ 66 (487)
T KOG2653|consen 6 KADIGLIGLAVMGQNLILNIADKGFTVCAYNRTTSKVDEFLANEA--------KG-----------TKIIGAYSLEDFVS 66 (487)
T ss_pred ccchhhhhHhhhhhhhhhcccccCceEEEeccchHhHHHHHHHhh--------cC-----------CcccCCCCHHHHHH
Confidence 467999999999999999999999999999999999887644311 11 012223333 2
Q ss_pred CCCCCCEEEEeccCChHHHHHHHHHHHHhCCCCcEEEecCC-CCCHH--HHhcccCCCCcEEEecCC---CCCCCCCeee
Q 007805 384 EFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTS-TIDLN--IVGEKTSSQDRIIGAHFF---SPAHVMPLLE 457 (589)
Q Consensus 384 ~~~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts-~~~~~--~~~~~~~~~~r~ig~h~~---~p~~~~~lve 457 (589)
.++.--.||.-|-.-. ....++++|.+++.++-||++... .++-+ ...+.....--|+|+--. ..+..+|.
T Consensus 67 klk~PR~iillvkAG~-pVD~~I~~L~p~LekgDiIIDGGNs~y~dT~RR~~el~k~GilfvG~GVSGGEEGAR~GPS-- 143 (487)
T KOG2653|consen 67 KLKKPRVIILLVKAGA-PVDQFIEELVPYLEKGDIIIDGGNSEYQDTERRCRELAKKGILFVGSGVSGGEEGARYGPS-- 143 (487)
T ss_pred hcCCCcEEEEEeeCCC-cHHHHHHHHHhhcCCCCEEEeCCcccCcchHHHHHHHHhcCcEEEecCccCcccccccCCc--
Confidence 3456667776663211 144678899999999888886432 23322 222222333346665541 11122211
Q ss_pred EecCCCCCHHHHHHHHHHHHHcCCe-----e--EEEcC-CCCccc----cccc---HHHHHHHHHHHHc--CCCHHHHHH
Q 007805 458 IVRTERTSAQVILDLMTVGKIIKKV-----P--VVVGN-CTGFAV----NRAF---FPYSQSARLLVSL--GVDVFRIDS 520 (589)
Q Consensus 458 iv~~~~t~~e~~~~~~~l~~~lG~~-----~--v~v~d-~~Gfi~----nRi~---~~~~~Ea~~l~~~--Gv~~~~iD~ 520 (589)
++|| .++++...++.+++.+..+ | ..+++ ..|-++ |-|= ..++.||+.++.. |++-.+|-.
T Consensus 144 lMpG--g~~~Awp~ik~ifq~iaakv~~~epCc~wvG~~GaGhfVKMVHNGIEYGDMqLI~EaY~vlk~~~gls~~eia~ 221 (487)
T KOG2653|consen 144 LMPG--GSKEAWPHIKDIFQKIAAKVSDGEPCCDWVGEGGAGHFVKMVHNGIEYGDMQLICEAYDVLKSVLGLSNDEIAE 221 (487)
T ss_pred cCCC--CChHHHHHHHHHHHHHHHHhcCCCCCeeeecCCCCccchhhhccCcccchHHHHHHHHHHHHHhcCCcHHHHHH
Confidence 4554 4788888888888776432 2 34544 445444 6663 4678899999977 568888777
Q ss_pred HH
Q 007805 521 AI 522 (589)
Q Consensus 521 ~~ 522 (589)
++
T Consensus 222 vF 223 (487)
T KOG2653|consen 222 VF 223 (487)
T ss_pred HH
Confidence 76
No 294
>TIGR00515 accD acetyl-CoA carboxylase, carboxyl transferase, beta subunit. The enzyme acetyl-CoA carboxylase contains a biotin carboxyl carrier protein or domain, a biotin carboxylase, and a carboxyl transferase. This model represents the beta chain of the carboxyl transferase for cases in which the architecture of the protein is as in E. coli, in which the carboxyltransferase portion consists of two non-identical subnits, alpha and beta.
Probab=97.51 E-value=0.0042 Score=62.37 Aligned_cols=156 Identities=18% Similarity=0.203 Sum_probs=99.9
Q ss_pred EEEeCCCC--CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCCcCCCCchhhhhccCCCcccccchhHHHHHHHHH
Q 007805 17 IITLINPP--VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLI 94 (589)
Q Consensus 17 ~i~l~~p~--~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l 94 (589)
.|.-+++. .-+++....+.+.++++.+... .+-+|.++..|++ -+++-. .....+.+.. ..+ .++
T Consensus 123 ~v~a~D~~f~gGSmg~~~geKi~r~~e~A~~~-~lPlV~l~dSgGa-----RmqEg~-----~sL~~~ak~~-~~~-~~~ 189 (285)
T TIGR00515 123 VVAVFDFAFMGGSMGSVVGEKFVRAIEKALED-NCPLIIFSASGGA-----RMQEAL-----LSLMQMAKTS-AAL-AKM 189 (285)
T ss_pred EEEEEeccccCCCccHHHHHHHHHHHHHHHHc-CCCEEEEEcCCCc-----ccccch-----hHHHhHHHHH-HHH-HHH
Confidence 34444553 4799999999999999998755 4667777655443 111100 0011111111 222 346
Q ss_pred HhCCCcEEEEeCCcccchhhH-HhhhcCEEEEeCCceEeccccccCCCCChhhhhhHhhhcCHHHHHHHHHcCCCCCHHH
Q 007805 95 EDCKKPIVAAVEGLALGGGLE-LAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEE 173 (589)
Q Consensus 95 ~~~~kp~iaav~G~a~GgG~~-lala~D~~ia~~~a~~~~pe~~~Gl~p~~g~~~~l~~~~G~~~a~~l~ltg~~~~a~~ 173 (589)
.....|.|+++-|+|.||+.. .++.+|+++|.++|.+++.-.+ .+...+|.. +.-+.-+|+-
T Consensus 190 ~~~~vP~IsVv~gpt~GG~aas~a~~~D~iia~p~A~ig~aGpr-----------Vie~ti~e~------lpe~~q~ae~ 252 (285)
T TIGR00515 190 SERGLPYISVLTDPTTGGVSASFAMLGDLNIAEPKALIGFAGPR-----------VIEQTVREK------LPEGFQTSEF 252 (285)
T ss_pred HcCCCCEEEEEeCCcchHHHHHHHhCCCEEEEECCeEEEcCCHH-----------HHHHHhcCc------cchhcCCHHH
Confidence 667899999999999999754 6679999999999888763322 111112210 1111235666
Q ss_pred HHHcCCcceecCchHHHHHHHHHHHHHHh
Q 007805 174 GWKLGLIDAVVTSEELLKVSRLWALDIAA 202 (589)
Q Consensus 174 A~~~Glv~~vv~~~~l~~~a~~~a~~la~ 202 (589)
+.+.|+||.||++.++.+...++...+..
T Consensus 253 ~~~~G~vD~iv~~~~~r~~l~~~L~~~~~ 281 (285)
T TIGR00515 253 LLEHGAIDMIVHRPEMKKTLASLLAKLQN 281 (285)
T ss_pred HHhCCCCcEEECcHHHHHHHHHHHHHHhh
Confidence 88899999999999998887777765543
No 295
>COG1052 LdhA Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only]
Probab=97.50 E-value=0.0002 Score=73.57 Aligned_cols=102 Identities=14% Similarity=0.058 Sum_probs=72.7
Q ss_pred ceEEEEcCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cCCCC
Q 007805 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD 387 (589)
Q Consensus 309 ~kI~IIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~ 387 (589)
+++||||.|.+|..+|+.+.-.|.+|..||+++. -+.. + . ....+.+ + +.++.
T Consensus 147 ktvGIiG~GrIG~avA~r~~~Fgm~v~y~~~~~~-~~~~-~-----------~------------~~~~y~~-l~ell~~ 200 (324)
T COG1052 147 KTLGIIGLGRIGQAVARRLKGFGMKVLYYDRSPN-PEAE-K-----------E------------LGARYVD-LDELLAE 200 (324)
T ss_pred CEEEEECCCHHHHHHHHHHhcCCCEEEEECCCCC-hHHH-h-----------h------------cCceecc-HHHHHHh
Confidence 7899999999999999999977889999999875 1110 0 0 1123333 4 67899
Q ss_pred CCEEEEeccCChHHHHHHHHHHHHhCCCCcEEEecCCCCC--HHHHhcccC
Q 007805 388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTID--LNIVGEKTS 436 (589)
Q Consensus 388 aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~--~~~~~~~~~ 436 (589)
||+|+..+|-..+...-+=++..+.++++++++..+-+-. -..+.+.+.
T Consensus 201 sDii~l~~Plt~~T~hLin~~~l~~mk~ga~lVNtaRG~~VDe~ALi~AL~ 251 (324)
T COG1052 201 SDIISLHCPLTPETRHLINAEELAKMKPGAILVNTARGGLVDEQALIDALK 251 (324)
T ss_pred CCEEEEeCCCChHHhhhcCHHHHHhCCCCeEEEECCCccccCHHHHHHHHH
Confidence 9999999998888666666778888999988754333333 334444443
No 296
>PF02056 Glyco_hydro_4: Family 4 glycosyl hydrolase; InterPro: IPR001088 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 4 GH4 from CAZY comprises enzymes with several known activities; 6-phospho-beta-glucosidase (3.2.1.86 from EC); 6-phospho-alpha-glucosidase (3.2.1.122 from EC); alpha-galactosidase (3.2.1.22 from EC). 6-phospho-alpha-glucosidase requires both NAD(H) and divalent metal (Mn2+, Fe2+, Co2+, or Ni2+) for activity [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1U8X_X 1S6Y_A 3FEF_B 1VJT_A 1UP4_A 1UP6_C 1UP7_E 1OBB_A.
Probab=97.48 E-value=0.00068 Score=63.41 Aligned_cols=74 Identities=18% Similarity=0.213 Sum_probs=48.1
Q ss_pred eEEEEcCCCCcHHHH--HHHHhC----CCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-
Q 007805 310 KVAVIGGGLMGSGIA--TAHILN----NIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY- 382 (589)
Q Consensus 310 kI~IIG~G~mG~~iA--~~l~~~----G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~- 382 (589)
||+|||+|..-.+.- ..+... +-+++++|+|+++++....-.+.. .+.-..+ -++..++|.
T Consensus 1 KI~iIGaGS~~~~~~l~~~l~~~~~l~~~ei~L~Did~~RL~~~~~~~~~~----~~~~~~~--------~~v~~ttd~~ 68 (183)
T PF02056_consen 1 KITIIGAGSTYFPLLLLGDLLRTEELSGSEIVLMDIDEERLEIVERLARRM----VEEAGAD--------LKVEATTDRR 68 (183)
T ss_dssp EEEEETTTSCCHHHHHHHHHHCTTTSTEEEEEEE-SCHHHHHHHHHHHHHH----HHHCTTS--------SEEEEESSHH
T ss_pred CEEEECCchHhhHHHHHHHHhcCccCCCcEEEEEcCCHHHHHHHHHHHHHH----HHhcCCC--------eEEEEeCCHH
Confidence 799999999876643 223322 338999999999988764433333 2221111 246778888
Q ss_pred cCCCCCCEEEEec
Q 007805 383 SEFKDVDMVIEAV 395 (589)
Q Consensus 383 ~~~~~aDlVIeav 395 (589)
+++++||+||.++
T Consensus 69 eAl~gADfVi~~i 81 (183)
T PF02056_consen 69 EALEGADFVINQI 81 (183)
T ss_dssp HHHTTESEEEE--
T ss_pred HHhCCCCEEEEEe
Confidence 8899999999766
No 297
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=97.48 E-value=0.00042 Score=73.37 Aligned_cols=86 Identities=19% Similarity=0.170 Sum_probs=62.0
Q ss_pred ceEEEEcCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCccCCCCC
Q 007805 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKDV 388 (589)
Q Consensus 309 ~kI~IIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~a 388 (589)
++|+|+|+|.+|..+|..+...|.+|+++|+++.+++.+.. .|. ......+.++++
T Consensus 203 ktVvViG~G~IG~~va~~ak~~Ga~ViV~d~d~~R~~~A~~-----------~G~-------------~~~~~~e~v~~a 258 (413)
T cd00401 203 KVAVVAGYGDVGKGCAQSLRGQGARVIVTEVDPICALQAAM-----------EGY-------------EVMTMEEAVKEG 258 (413)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEECChhhHHHHHh-----------cCC-------------EEccHHHHHcCC
Confidence 68999999999999999999999999999999988776522 221 001111456789
Q ss_pred CEEEEeccCChHHHHHHHH-HHHHhCCCCcEEEecC
Q 007805 389 DMVIEAVIESVPLKQKIFS-ELEKACPPHCILATNT 423 (589)
Q Consensus 389 DlVIeavpe~~~~k~~v~~-~l~~~~~~~~ii~s~t 423 (589)
|+||+|+.... ++. .....++++.+++..+
T Consensus 259 DVVI~atG~~~-----~i~~~~l~~mk~GgilvnvG 289 (413)
T cd00401 259 DIFVTTTGNKD-----IITGEHFEQMKDGAIVCNIG 289 (413)
T ss_pred CEEEECCCCHH-----HHHHHHHhcCCCCcEEEEeC
Confidence 99999986322 233 3456788888876444
No 298
>cd01337 MDH_glyoxysomal_mitochondrial Glyoxysomal and mitochondrial malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are localized to the glycosome and mitochondria. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=97.48 E-value=0.00053 Score=70.07 Aligned_cols=97 Identities=20% Similarity=0.336 Sum_probs=61.1
Q ss_pred ceEEEEcC-CCCcHHHHHHHHhCCC--eEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhccccc-C-C--
Q 007805 309 RKVAVIGG-GLMGSGIATAHILNNI--YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGV-L-D-- 381 (589)
Q Consensus 309 ~kI~IIG~-G~mG~~iA~~l~~~G~--~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~-~-~-- 381 (589)
.||+|||+ |.+|+++|..++..|. +++++|++ .+ .+.. ++ +..+. ..-.+... . +
T Consensus 1 ~KI~IIGaaG~VG~~~a~~l~~~~~~~elvLiDi~--~a-~g~a-----lD--L~~~~--------~~~~i~~~~~~~~~ 62 (310)
T cd01337 1 VKVAVLGAAGGIGQPLSLLLKLNPLVSELALYDIV--NT-PGVA-----AD--LSHIN--------TPAKVTGYLGPEEL 62 (310)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCCcEEEEEecC--cc-ceee-----hH--hHhCC--------CcceEEEecCCCch
Confidence 38999999 9999999999998885 89999998 21 1110 00 11110 00133432 2 2
Q ss_pred ccCCCCCCEEEEec--cC------------ChHHHHHHHHHHHHhCCCCcEEEecCC
Q 007805 382 YSEFKDVDMVIEAV--IE------------SVPLKQKIFSELEKACPPHCILATNTS 424 (589)
Q Consensus 382 ~~~~~~aDlVIeav--pe------------~~~~k~~v~~~l~~~~~~~~ii~s~ts 424 (589)
++++++||+||.+. |. +..+.+++...|.++. |+++++..|.
T Consensus 63 y~~~~daDivvitaG~~~k~g~tR~dll~~N~~i~~~i~~~i~~~~-p~a~vivvtN 118 (310)
T cd01337 63 KKALKGADVVVIPAGVPRKPGMTRDDLFNINAGIVRDLATAVAKAC-PKALILIISN 118 (310)
T ss_pred HHhcCCCCEEEEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCeEEEEccC
Confidence 58999999999876 32 3334555666677775 5666654443
No 299
>cd01338 MDH_choloroplast_like Chloroplast-like malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are bacterial MDHs, and plant MDHs localized to the choloroplasts. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=97.43 E-value=0.00017 Score=74.30 Aligned_cols=101 Identities=16% Similarity=0.068 Sum_probs=64.5
Q ss_pred ceEEEEcC-CCCcHHHHHHHHhCCC-------eEEEEeCChHH--HHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccc
Q 007805 309 RKVAVIGG-GLMGSGIATAHILNNI-------YVVLKEVNSEY--LLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKG 378 (589)
Q Consensus 309 ~kI~IIG~-G~mG~~iA~~l~~~G~-------~V~~~d~~~~~--~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~ 378 (589)
.||+|||+ |.+|.++|..++..|. +++++|++++. ++.-.-.+..... .....+..
T Consensus 3 ~KV~IiGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~Di~~~~~~a~g~a~Dl~~~~~--------------~~~~~~~i 68 (322)
T cd01338 3 VRVAVTGAAGQIGYSLLFRIASGEMFGPDQPVILQLLELPQALKALEGVAMELEDCAF--------------PLLAEIVI 68 (322)
T ss_pred eEEEEECCCcHHHHHHHHHHHhccccCCCCceEEEEEecCCcccccceeehhhhhccc--------------cccCceEE
Confidence 58999999 9999999999998886 79999996432 2211111110000 00011122
Q ss_pred -cCCccCCCCCCEEEEecc--C------------ChHHHHHHHHHHHHhCCCCcEEEecC
Q 007805 379 -VLDYSEFKDVDMVIEAVI--E------------SVPLKQKIFSELEKACPPHCILATNT 423 (589)
Q Consensus 379 -~~~~~~~~~aDlVIeavp--e------------~~~~k~~v~~~l~~~~~~~~ii~s~t 423 (589)
+.+++++++||+||.+.- . +..+.+++..+|.++.+++++++..|
T Consensus 69 ~~~~~~~~~daDivvitaG~~~k~g~tR~dll~~N~~i~~~i~~~i~~~~~~~~iiivvs 128 (322)
T cd01338 69 TDDPNVAFKDADWALLVGAKPRGPGMERADLLKANGKIFTAQGKALNDVASRDVKVLVVG 128 (322)
T ss_pred ecCcHHHhCCCCEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEec
Confidence 455689999999998762 2 23345666677888886677666554
No 300
>TIGR03133 malonate_beta malonate decarboxylase, beta subunit. Members of this protein family are the beta subunit of malonate decarboxylase. Malonate decarboxylase may be a soluble enzyme, or linked to membrane subunits and active as a sodium pump. In the malonate decarboxylase complex, the beta subunit appears to act as a malonyl-CoA decarboxylase.
Probab=97.43 E-value=0.013 Score=58.32 Aligned_cols=139 Identities=15% Similarity=0.218 Sum_probs=82.7
Q ss_pred CCCCCHHHHHHHHHHHHHHhcC----CCceEEEEEcCCCCCcCCCCchhhhhccCCCcccccchhHHHHHHHHHHhCCCc
Q 007805 25 VNALAIPIVAGLKDKFEEATSR----DDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKP 100 (589)
Q Consensus 25 ~N~l~~~~~~~l~~~l~~~~~~----~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kp 100 (589)
.-++....-+.+..+++.+.+| ..+-+|.|.-.|+ +-+++-.. . ...+.+.. ..+ ..+... .|
T Consensus 72 GGS~G~~~g~Ki~r~~e~A~~~~~~~~~~PvV~l~dSgG-----aRlqEg~~----~-L~~~a~i~-~~~-~~ls~~-vP 138 (274)
T TIGR03133 72 GGSVGEVHGAKIVGALRLAIEDNRKGQPTAVVLLLDTGG-----VRLQEANA----G-LIAIAEIM-RAI-LDARAA-VP 138 (274)
T ss_pred CcCCCHHHHHHHHHHHHHHHhhhhccCCCCEEEEEcCCC-----cChhhhHH----H-HHHHHHHH-HHH-HHHhCC-CC
Confidence 3688888889999999988752 1234666654333 33322100 0 00111111 122 224444 99
Q ss_pred EEEEeCCc--ccchhhHHhhhcCEEEEeCCceEeccccccCCCCChhhhhhHhhhcCH--HHHHHHHHcCCCCCHHHHHH
Q 007805 101 IVAAVEGL--ALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGL--SKAIEMMLLSKSITSEEGWK 176 (589)
Q Consensus 101 ~iaav~G~--a~GgG~~lala~D~~ia~~~a~~~~pe~~~Gl~p~~g~~~~l~~~~G~--~~a~~l~ltg~~~~a~~A~~ 176 (589)
+|+++-|. |+||+..++..||++|+++++++++.-. .......|. -...+--|.-+.+.++....
T Consensus 139 ~Isvv~Gp~gc~GG~a~~a~l~D~vim~~~a~i~~aGP-----------~VIe~~~G~e~~~~~d~~l~~~~lGG~~~~~ 207 (274)
T TIGR03133 139 VIGVIGGRVGCFGGMGIAAGLCSYLIMTEEGRLGLSGP-----------EVIEQEAGVEEFDSRDRALVWRTTGGKHRFL 207 (274)
T ss_pred EEEEEeCCCCcchHHHHHHhcCCEEEEeCCcEEeccCH-----------HHHHHhcCCCccCHHHhcccccccchHhHhh
Confidence 99999999 8999999999999999999887775211 111111221 11122223334455666778
Q ss_pred cCCcceecCch
Q 007805 177 LGLIDAVVTSE 187 (589)
Q Consensus 177 ~Glv~~vv~~~ 187 (589)
.|++|.+++++
T Consensus 208 sG~~D~~v~dd 218 (274)
T TIGR03133 208 SGDADVLVEDD 218 (274)
T ss_pred cccceEEeCCH
Confidence 99999999764
No 301
>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase. Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,
Probab=97.42 E-value=0.00036 Score=71.81 Aligned_cols=92 Identities=21% Similarity=0.157 Sum_probs=59.0
Q ss_pred ceEEEEcCCCCcHHHHHHHHhCC-CeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cCCC
Q 007805 309 RKVAVIGGGLMGSGIATAHILNN-IYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFK 386 (589)
Q Consensus 309 ~kI~IIG~G~mG~~iA~~l~~~G-~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~ 386 (589)
++|+|||+|.||..++..+...| .+|+++|+++++.+...+.+ |. .....++. +.+.
T Consensus 179 ~~V~ViGaG~iG~~~a~~L~~~g~~~V~v~~r~~~ra~~la~~~----------g~-----------~~~~~~~~~~~l~ 237 (311)
T cd05213 179 KKVLVIGAGEMGELAAKHLAAKGVAEITIANRTYERAEELAKEL----------GG-----------NAVPLDELLELLN 237 (311)
T ss_pred CEEEEECcHHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHc----------CC-----------eEEeHHHHHHHHh
Confidence 68999999999999999998865 68999999998765532211 10 00001122 4567
Q ss_pred CCCEEEEeccCChHHHHHHHHHHHHhC-CCCcEEEecC
Q 007805 387 DVDMVIEAVIESVPLKQKIFSELEKAC-PPHCILATNT 423 (589)
Q Consensus 387 ~aDlVIeavpe~~~~k~~v~~~l~~~~-~~~~ii~s~t 423 (589)
++|+||.|++.... ..++..+.... ..+.++++.+
T Consensus 238 ~aDvVi~at~~~~~--~~~~~~~~~~~~~~~~~viDla 273 (311)
T cd05213 238 EADVVISATGAPHY--AKIVERAMKKRSGKPRLIVDLA 273 (311)
T ss_pred cCCEEEECCCCCch--HHHHHHHHhhCCCCCeEEEEeC
Confidence 89999999985443 33344433222 2455666554
No 302
>PLN02306 hydroxypyruvate reductase
Probab=97.42 E-value=0.00032 Score=73.88 Aligned_cols=117 Identities=16% Similarity=0.139 Sum_probs=73.1
Q ss_pred ceEEEEcCCCCcHHHHHHHH-hCCCeEEEEeCChHH-HHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cCC
Q 007805 309 RKVAVIGGGLMGSGIATAHI-LNNIYVVLKEVNSEY-LLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEF 385 (589)
Q Consensus 309 ~kI~IIG~G~mG~~iA~~l~-~~G~~V~~~d~~~~~-~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~ 385 (589)
++|||||.|.+|..+|..+. ..|.+|+.||+.+.. .+......... ....+... .......++ +.+
T Consensus 166 ktvGIiG~G~IG~~vA~~l~~~fGm~V~~~d~~~~~~~~~~~~~~~~~---l~~~~~~~--------~~~~~~~~L~ell 234 (386)
T PLN02306 166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQSTRLEKFVTAYGQF---LKANGEQP--------VTWKRASSMEEVL 234 (386)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCEEEEECCCCchhhhhhhhhhccc---cccccccc--------ccccccCCHHHHH
Confidence 68999999999999999985 669999999987642 11100000000 00000000 011123455 667
Q ss_pred CCCCEEEEeccCChHHHHHHHHHHHHhCCCCcEEEecCCCC--CHHHHhcccC
Q 007805 386 KDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTI--DLNIVGEKTS 436 (589)
Q Consensus 386 ~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~--~~~~~~~~~~ 436 (589)
+.||+|+.++|-..+.+.-+=++..+.++++++++..+-+- .-..+.+.+.
T Consensus 235 ~~sDiV~lh~Plt~~T~~lin~~~l~~MK~ga~lIN~aRG~lVDe~AL~~AL~ 287 (386)
T PLN02306 235 READVISLHPVLDKTTYHLINKERLALMKKEAVLVNASRGPVIDEVALVEHLK 287 (386)
T ss_pred hhCCEEEEeCCCChhhhhhcCHHHHHhCCCCeEEEECCCccccCHHHHHHHHH
Confidence 99999999999777765555566778899999887555443 3344555543
No 303
>PLN00106 malate dehydrogenase
Probab=97.39 E-value=0.00019 Score=73.80 Aligned_cols=97 Identities=18% Similarity=0.260 Sum_probs=60.5
Q ss_pred ceEEEEcC-CCCcHHHHHHHHhCCC--eEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhccc---ccCC-
Q 007805 309 RKVAVIGG-GLMGSGIATAHILNNI--YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLK---GVLD- 381 (589)
Q Consensus 309 ~kI~IIG~-G~mG~~iA~~l~~~G~--~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~---~~~~- 381 (589)
.||+|||+ |.+|+.+|..++..+. ++.++|+++ ....+. .+. .. . . .-.+. ..++
T Consensus 19 ~KV~IiGaaG~VG~~~a~~l~~~~~~~el~L~Di~~-~~g~a~-Dl~--------~~--~-----~-~~~i~~~~~~~d~ 80 (323)
T PLN00106 19 FKVAVLGAAGGIGQPLSLLMKMNPLVSELHLYDIAN-TPGVAA-DVS--------HI--N-----T-PAQVRGFLGDDQL 80 (323)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCCCEEEEEecCC-CCeeEc-hhh--------hC--C-----c-CceEEEEeCCCCH
Confidence 59999999 9999999999997775 899999987 111010 000 00 0 0 00222 2223
Q ss_pred ccCCCCCCEEEEecc--C------------ChHHHHHHHHHHHHhCCCCcEEEecCC
Q 007805 382 YSEFKDVDMVIEAVI--E------------SVPLKQKIFSELEKACPPHCILATNTS 424 (589)
Q Consensus 382 ~~~~~~aDlVIeavp--e------------~~~~k~~v~~~l~~~~~~~~ii~s~ts 424 (589)
++++++||+||.+.- . +..+.+++.+.+.++. ++++++..|.
T Consensus 81 ~~~l~~aDiVVitAG~~~~~g~~R~dll~~N~~i~~~i~~~i~~~~-p~aivivvSN 136 (323)
T PLN00106 81 GDALKGADLVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEAVAKHC-PNALVNIISN 136 (323)
T ss_pred HHHcCCCCEEEEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHC-CCeEEEEeCC
Confidence 378999999997652 2 3345556666777777 5555543333
No 304
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=97.39 E-value=0.0002 Score=64.17 Aligned_cols=74 Identities=18% Similarity=0.171 Sum_probs=52.4
Q ss_pred cceEEEEcCCCCcHHHHHHHHhCCCe-EEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cCC
Q 007805 308 VRKVAVIGGGLMGSGIATAHILNNIY-VVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEF 385 (589)
Q Consensus 308 ~~kI~IIG~G~mG~~iA~~l~~~G~~-V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~ 385 (589)
-++|.|||+|-||++++..|+..|.+ |++++|+.++++...+.+ ....+ .....+++ +.+
T Consensus 12 ~~~vlviGaGg~ar~v~~~L~~~g~~~i~i~nRt~~ra~~l~~~~--------~~~~~----------~~~~~~~~~~~~ 73 (135)
T PF01488_consen 12 GKRVLVIGAGGAARAVAAALAALGAKEITIVNRTPERAEALAEEF--------GGVNI----------EAIPLEDLEEAL 73 (135)
T ss_dssp TSEEEEESSSHHHHHHHHHHHHTTSSEEEEEESSHHHHHHHHHHH--------TGCSE----------EEEEGGGHCHHH
T ss_pred CCEEEEECCHHHHHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHc--------Ccccc----------ceeeHHHHHHHH
Confidence 47899999999999999999999986 999999999877653322 00000 01122233 456
Q ss_pred CCCCEEEEeccCCh
Q 007805 386 KDVDMVIEAVIESV 399 (589)
Q Consensus 386 ~~aDlVIeavpe~~ 399 (589)
.++|+||.|+|-..
T Consensus 74 ~~~DivI~aT~~~~ 87 (135)
T PF01488_consen 74 QEADIVINATPSGM 87 (135)
T ss_dssp HTESEEEE-SSTTS
T ss_pred hhCCeEEEecCCCC
Confidence 78999999997543
No 305
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=97.39 E-value=0.00045 Score=72.85 Aligned_cols=96 Identities=24% Similarity=0.198 Sum_probs=65.5
Q ss_pred ceEEEEcCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCccCCCCC
Q 007805 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKDV 388 (589)
Q Consensus 309 ~kI~IIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~a 388 (589)
++|+|+|.|.+|..+|..+...|.+|+++|+++.+...+. ..|. ...+..++++++
T Consensus 196 k~VvViG~G~IG~~vA~~ak~~Ga~ViV~d~dp~r~~~A~-----------~~G~-------------~v~~leeal~~a 251 (406)
T TIGR00936 196 KTVVVAGYGWCGKGIAMRARGMGARVIVTEVDPIRALEAA-----------MDGF-------------RVMTMEEAAKIG 251 (406)
T ss_pred CEEEEECCCHHHHHHHHHHhhCcCEEEEEeCChhhHHHHH-----------hcCC-------------EeCCHHHHHhcC
Confidence 6899999999999999999999999999999997654431 1121 111111456789
Q ss_pred CEEEEeccCChHHHHHHHH-HHHHhCCCCcEEEecCCC---CCHHHHhc
Q 007805 389 DMVIEAVIESVPLKQKIFS-ELEKACPPHCILATNTST---IDLNIVGE 433 (589)
Q Consensus 389 DlVIeavpe~~~~k~~v~~-~l~~~~~~~~ii~s~ts~---~~~~~~~~ 433 (589)
|+||+++.. . .++. +....++++++++..+.. +....+.+
T Consensus 252 DVVItaTG~-~----~vI~~~~~~~mK~GailiN~G~~~~eId~~aL~~ 295 (406)
T TIGR00936 252 DIFITATGN-K----DVIRGEHFENMKDGAIVANIGHFDVEIDVKALEE 295 (406)
T ss_pred CEEEECCCC-H----HHHHHHHHhcCCCCcEEEEECCCCceeCHHHHHH
Confidence 999998863 2 3333 355678899888754442 34445544
No 306
>TIGR02371 ala_DH_arch alanine dehydrogenase, Archaeoglobus fulgidus type. This enzyme, a homolog of bacterial ornithine cyclodeaminases and marsupial mu-crystallins, is a homodimeric, NAD-dependent alanine dehydrogenase found in Archaeoglobus fulgidus and several other Archaea. For a number of close homologs, scoring between trusted and noise cutoffs, it is not clear at present what is the enzymatic activity.
Probab=97.38 E-value=0.00046 Score=71.42 Aligned_cols=94 Identities=10% Similarity=-0.009 Sum_probs=64.2
Q ss_pred cceEEEEcCCCCcHHHHHHHHh--CCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cC
Q 007805 308 VRKVAVIGGGLMGSGIATAHIL--NNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SE 384 (589)
Q Consensus 308 ~~kI~IIG~G~mG~~iA~~l~~--~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~ 384 (589)
.++|+|||+|.||...+..+.. ...+|.+||+++++.+...+++++ .| -.+...++. ++
T Consensus 128 ~~~lgiiG~G~qA~~~l~al~~~~~~~~v~V~~r~~~~~~~~~~~~~~-------~g-----------~~v~~~~~~~ea 189 (325)
T TIGR02371 128 SSVLGIIGAGRQAWTQLEALSRVFDLEEVSVYCRTPSTREKFALRASD-------YE-----------VPVRAATDPREA 189 (325)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHHHHHHh-------hC-----------CcEEEeCCHHHH
Confidence 3679999999999997766654 345899999999998775443321 11 012334555 77
Q ss_pred CCCCCEEEEeccCChHHHHHHHHHHHHhCCCCcEEEecCCC
Q 007805 385 FKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTST 425 (589)
Q Consensus 385 ~~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~ 425 (589)
+++||+||.|+|..-.+ +. .+.+++++.|.+..|.
T Consensus 190 v~~aDiVitaT~s~~P~----~~--~~~l~~g~~v~~vGs~ 224 (325)
T TIGR02371 190 VEGCDILVTTTPSRKPV----VK--ADWVSEGTHINAIGAD 224 (325)
T ss_pred hccCCEEEEecCCCCcE----ec--HHHcCCCCEEEecCCC
Confidence 89999999999864322 21 2346888887766554
No 307
>PRK11861 bifunctional prephenate dehydrogenase/3-phosphoshikimate 1-carboxyvinyltransferase; Provisional
Probab=97.38 E-value=0.00076 Score=76.83 Aligned_cols=94 Identities=9% Similarity=0.053 Sum_probs=76.4
Q ss_pred EEEeccCChHHHHHHHHHHHHhCCCCcEEEecCCCC--CHHHHhcccCC-CCcEEEecCCCCCC------------CCCe
Q 007805 391 VIEAVIESVPLKQKIFSELEKACPPHCILATNTSTI--DLNIVGEKTSS-QDRIIGAHFFSPAH------------VMPL 455 (589)
Q Consensus 391 VIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~--~~~~~~~~~~~-~~r~ig~h~~~p~~------------~~~l 455 (589)
||+|+| +....++++++.++++++++|++.+|+- .+..+...++. ..+|+|.||+.... .+..
T Consensus 1 vila~P--v~~~~~~~~~~~~~~~~~~~vtDv~SvK~~i~~~~~~~l~~~~~~fvg~HPMaG~e~~G~~~a~~~Lf~~~~ 78 (673)
T PRK11861 1 VLLAAP--VAQTGPLLARIAPFLDASTIVTDAGSTKSDVVAAARAALGARIGQFVPGHPIAGRESSGVDAALADLYVGRN 78 (673)
T ss_pred CEEEcC--HHHHHHHHHHHhhhCCCCcEEEecCcccHHHHHHHHHhccccCCeEEecCCcCcCcchhhhhhChhHhCCCe
Confidence 689999 8888999999999999999998877753 34555555443 35799999966552 4456
Q ss_pred eeEecCCCCCHHHHHHHHHHHHHcCCeeEEE
Q 007805 456 LEIVRTERTSAQVILDLMTVGKIIKKVPVVV 486 (589)
Q Consensus 456 veiv~~~~t~~e~~~~~~~l~~~lG~~~v~v 486 (589)
+.++|.+.++++.++.+.++++.+|.+++.+
T Consensus 79 ~il~p~~~~~~~~~~~~~~l~~~~Ga~~~~~ 109 (673)
T PRK11861 79 VVLCALPENAPDALARVEAMWRAARADVRAM 109 (673)
T ss_pred EEEecCCCCCHHHHHHHHHHHHHcCCEEEEC
Confidence 6788999999999999999999999999988
No 308
>PRK14179 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.36 E-value=0.0004 Score=69.46 Aligned_cols=71 Identities=14% Similarity=0.215 Sum_probs=54.3
Q ss_pred ceEEEEcC-CCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cCCC
Q 007805 309 RKVAVIGG-GLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFK 386 (589)
Q Consensus 309 ~kI~IIG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~ 386 (589)
++|+|||. |.||.+||..|.++|+.|++|..... ++ +.++
T Consensus 159 k~v~vIG~S~ivG~Pla~lL~~~gatVtv~~s~t~--------------------------------------~l~~~~~ 200 (284)
T PRK14179 159 KHAVVIGRSNIVGKPMAQLLLDKNATVTLTHSRTR--------------------------------------NLAEVAR 200 (284)
T ss_pred CEEEEECCCCcCcHHHHHHHHHCCCEEEEECCCCC--------------------------------------CHHHHHh
Confidence 68999998 99999999999999999999942211 22 3468
Q ss_pred CCCEEEEeccCChHHHHHHHHHHHHhCCCCcEEEecCC
Q 007805 387 DVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTS 424 (589)
Q Consensus 387 ~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts 424 (589)
+||+||.|++..-.+..+ .+++++++++.+.
T Consensus 201 ~ADIVI~avg~~~~v~~~-------~ik~GavVIDvgi 231 (284)
T PRK14179 201 KADILVVAIGRGHFVTKE-------FVKEGAVVIDVGM 231 (284)
T ss_pred hCCEEEEecCccccCCHH-------HccCCcEEEEecc
Confidence 899999999844433332 3789999887653
No 309
>cd01487 E1_ThiF_like E1_ThiF_like. Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=97.36 E-value=0.00057 Score=63.99 Aligned_cols=95 Identities=21% Similarity=0.295 Sum_probs=59.4
Q ss_pred eEEEEcCCCCcHHHHHHHHhCCC-eEEEEeCCh---HHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccC-----
Q 007805 310 KVAVIGGGLMGSGIATAHILNNI-YVVLKEVNS---EYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVL----- 380 (589)
Q Consensus 310 kI~IIG~G~mG~~iA~~l~~~G~-~V~~~d~~~---~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~----- 380 (589)
||.|||+|-||+.++..|+..|+ +++++|.+. +.+.+-. ... -.-|+-..+.....+.++....
T Consensus 1 ~VlViG~GglGs~ia~~La~~Gvg~i~lvD~D~v~~sNl~Rq~-----~~~--~~vg~~Ka~~~~~~l~~lnp~v~i~~~ 73 (174)
T cd01487 1 KVGIAGAGGLGSNIAVLLARSGVGNLKLVDFDVVEPSNLNRQQ-----YFL--SQIGEPKVEALKENLREINPFVKIEAI 73 (174)
T ss_pred CEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCEEcCcchhccc-----ccH--hhCCChHHHHHHHHHHHHCCCCEEEEE
Confidence 58999999999999999999998 599999886 3332210 000 0112212222222222221111
Q ss_pred -------Cc-cCCCCCCEEEEeccCChHHHHHHHHHHHHh
Q 007805 381 -------DY-SEFKDVDMVIEAVIESVPLKQKIFSELEKA 412 (589)
Q Consensus 381 -------~~-~~~~~aDlVIeavpe~~~~k~~v~~~l~~~ 412 (589)
+. +.++++|+||+| .++++.+..+.......
T Consensus 74 ~~~~~~~~~~~~l~~~DlVi~~-~d~~~~r~~i~~~~~~~ 112 (174)
T cd01487 74 NIKIDENNLEGLFGDCDIVVEA-FDNAETKAMLAESLLGN 112 (174)
T ss_pred EeecChhhHHHHhcCCCEEEEC-CCCHHHHHHHHHHHHHH
Confidence 11 347899999999 56888887777776665
No 310
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=97.34 E-value=0.0012 Score=64.55 Aligned_cols=95 Identities=20% Similarity=0.229 Sum_probs=63.5
Q ss_pred ceEEEEcCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc----cC
Q 007805 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY----SE 384 (589)
Q Consensus 309 ~kI~IIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~----~~ 384 (589)
++|.|||+|.+|.++|..|.+.|++|+++|.+++..++.... .+...+-.| -.++. ++
T Consensus 1 m~iiIiG~G~vG~~va~~L~~~g~~Vv~Id~d~~~~~~~~~~---~~~~~~v~g---------------d~t~~~~L~~a 62 (225)
T COG0569 1 MKIIIIGAGRVGRSVARELSEEGHNVVLIDRDEERVEEFLAD---ELDTHVVIG---------------DATDEDVLEEA 62 (225)
T ss_pred CEEEEECCcHHHHHHHHHHHhCCCceEEEEcCHHHHHHHhhh---hcceEEEEe---------------cCCCHHHHHhc
Confidence 479999999999999999999999999999999988773220 000000001 11121 22
Q ss_pred -CCCCCEEEEeccCChHHHHHHHHHHHHh-CCCCcEEEecC
Q 007805 385 -FKDVDMVIEAVIESVPLKQKIFSELEKA-CPPHCILATNT 423 (589)
Q Consensus 385 -~~~aDlVIeavpe~~~~k~~v~~~l~~~-~~~~~ii~s~t 423 (589)
+.++|.+|-++.+|. ...++..+... +....+|+-..
T Consensus 63 gi~~aD~vva~t~~d~--~N~i~~~la~~~~gv~~viar~~ 101 (225)
T COG0569 63 GIDDADAVVAATGNDE--VNSVLALLALKEFGVPRVIARAR 101 (225)
T ss_pred CCCcCCEEEEeeCCCH--HHHHHHHHHHHhcCCCcEEEEec
Confidence 789999999998655 34555555533 55556666433
No 311
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=97.34 E-value=0.00052 Score=72.87 Aligned_cols=86 Identities=22% Similarity=0.211 Sum_probs=61.9
Q ss_pred ceEEEEcCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cCCCC
Q 007805 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD 387 (589)
Q Consensus 309 ~kI~IIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~ 387 (589)
++|+|+|.|.+|..+|..+...|.+|+++|+++.+...+.. .| ... .++ +.+++
T Consensus 213 k~VlViG~G~IG~~vA~~lr~~Ga~ViV~d~dp~ra~~A~~-----------~G-------------~~v-~~l~eal~~ 267 (425)
T PRK05476 213 KVVVVAGYGDVGKGCAQRLRGLGARVIVTEVDPICALQAAM-----------DG-------------FRV-MTMEEAAEL 267 (425)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCchhhHHHHh-----------cC-------------CEe-cCHHHHHhC
Confidence 68999999999999999999999999999999887544311 12 111 112 45678
Q ss_pred CCEEEEeccCChHHHHHHHH-HHHHhCCCCcEEEecCC
Q 007805 388 VDMVIEAVIESVPLKQKIFS-ELEKACPPHCILATNTS 424 (589)
Q Consensus 388 aDlVIeavpe~~~~k~~v~~-~l~~~~~~~~ii~s~ts 424 (589)
+|+||.|+.. . .++. +....++++++++....
T Consensus 268 aDVVI~aTG~-~----~vI~~~~~~~mK~GailiNvG~ 300 (425)
T PRK05476 268 GDIFVTATGN-K----DVITAEHMEAMKDGAILANIGH 300 (425)
T ss_pred CCEEEECCCC-H----HHHHHHHHhcCCCCCEEEEcCC
Confidence 9999999842 2 2343 45667889988865544
No 312
>TIGR01771 L-LDH-NAD L-lactate dehydrogenase. This model represents the NAD-dependent L-lactate dehydrogenases from bacteria and eukaryotes. This enzyme function as as the final step in anaerobic glycolysis. Although lactate dehydrogenases have in some cases been mistaken for malate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of malate dehydrogenases.
Probab=97.34 E-value=0.00022 Score=72.72 Aligned_cols=97 Identities=28% Similarity=0.325 Sum_probs=62.1
Q ss_pred EEcCCCCcHHHHHHHHhCCC--eEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCccCCCCCCE
Q 007805 313 VIGGGLMGSGIATAHILNNI--YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKDVDM 390 (589)
Q Consensus 313 IIG~G~mG~~iA~~l~~~G~--~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~aDl 390 (589)
|||+|.+|+++|..++..+. ++.++|++++.++.-...+......... -..++ ..+++++++||+
T Consensus 1 iIGaG~VG~~~a~~l~~~~l~~el~L~Di~~~~~~g~a~Dl~~~~~~~~~------------~~~i~-~~~~~~~~daDi 67 (299)
T TIGR01771 1 IIGAGNVGSSTAFALLNQGIADEIVLIDINKDKAEGEAMDLQHAASFLPT------------PKKIR-SGDYSDCKDADL 67 (299)
T ss_pred CCCcCHHHHHHHHHHHhcCCCCEEEEEeCCCChhhHHHHHHHHhhcccCC------------CeEEe-cCCHHHHCCCCE
Confidence 79999999999999998876 7999999887655433333222100000 01222 355689999999
Q ss_pred EEEeccC--------------ChHHHHHHHHHHHHhCCCCcEEEecC
Q 007805 391 VIEAVIE--------------SVPLKQKIFSELEKACPPHCILATNT 423 (589)
Q Consensus 391 VIeavpe--------------~~~~k~~v~~~l~~~~~~~~ii~s~t 423 (589)
||.+.-. +..+.+++..++.++. ++++++..|
T Consensus 68 vVitag~~rk~g~~R~dll~~N~~i~~~~~~~i~~~~-p~~~vivvs 113 (299)
T TIGR01771 68 VVITAGAPQKPGETRLELVGRNVRIMKSIVPEVVKSG-FDGIFLVAT 113 (299)
T ss_pred EEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCeEEEEeC
Confidence 9987632 2334555666677765 555554333
No 313
>PLN02494 adenosylhomocysteinase
Probab=97.33 E-value=0.0021 Score=68.50 Aligned_cols=87 Identities=15% Similarity=0.226 Sum_probs=62.1
Q ss_pred ceEEEEcCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cCCCC
Q 007805 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD 387 (589)
Q Consensus 309 ~kI~IIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~ 387 (589)
++|+|+|.|.+|..+|..+...|.+|+++|+++.+...+. ..|. ... ++ +.++.
T Consensus 255 KtVvViGyG~IGr~vA~~aka~Ga~VIV~e~dp~r~~eA~-----------~~G~-------------~vv-~leEal~~ 309 (477)
T PLN02494 255 KVAVICGYGDVGKGCAAAMKAAGARVIVTEIDPICALQAL-----------MEGY-------------QVL-TLEDVVSE 309 (477)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchhhHHHH-----------hcCC-------------eec-cHHHHHhh
Confidence 6899999999999999999999999999999987654431 1111 111 12 45678
Q ss_pred CCEEEEeccCChHHHHHHHHHHHHhCCCCcEEEecCC
Q 007805 388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTS 424 (589)
Q Consensus 388 aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts 424 (589)
+|+||++....- .+..+..+.++++++++..+.
T Consensus 310 ADVVI~tTGt~~----vI~~e~L~~MK~GAiLiNvGr 342 (477)
T PLN02494 310 ADIFVTTTGNKD----IIMVDHMRKMKNNAIVCNIGH 342 (477)
T ss_pred CCEEEECCCCcc----chHHHHHhcCCCCCEEEEcCC
Confidence 999999765322 233555667899998875554
No 314
>COG0740 ClpP Protease subunit of ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=97.32 E-value=0.0031 Score=59.33 Aligned_cols=136 Identities=21% Similarity=0.260 Sum_probs=85.0
Q ss_pred CCHHHHHHHHHHHHHHhcCCCceEEEE--EcCCCCCcCCCCchhhhhccCCCcccccchhHHHHHHHHHHhCCCcEEEEe
Q 007805 28 LAIPIVAGLKDKFEEATSRDDVKAIVL--TGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAV 105 (589)
Q Consensus 28 l~~~~~~~l~~~l~~~~~~~~v~~vvl--~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kp~iaav 105 (589)
++..+...+...+-.++.++..+-|.| -+.|+...+| ...+ +.+...+.||...+
T Consensus 36 I~~~~a~~i~aqll~Lea~~~~k~I~lyINSpGG~V~aG----------------------~AIy-dtm~~ik~~V~ti~ 92 (200)
T COG0740 36 IEDHMANLIVAQLLFLEAEDPDKDIYLYINSPGGSVTAG----------------------LAIY-DTMQFIKPPVSTIC 92 (200)
T ss_pred echHHHHHHHHHHHHHHhcCCCCCeEEEEeCCCcccchh----------------------HHHH-HHHHhcCCCeEEEE
Confidence 444455666666666665544444444 3444333333 2556 67889999999999
Q ss_pred CCcccchhhHHhhhcCEE--EEeCCceEeccccccCCCCChhhhh-----------------hHhhhcCH--HHHHHHHH
Q 007805 106 EGLALGGGLELAMGCHAR--IAAPKTQLGLPELTLGVIPGFGGTQ-----------------RLPRLVGL--SKAIEMML 164 (589)
Q Consensus 106 ~G~a~GgG~~lala~D~~--ia~~~a~~~~pe~~~Gl~p~~g~~~-----------------~l~~~~G~--~~a~~l~l 164 (589)
-|.|...|.-|++++|.. ++.++|++-+-... |.+-|.. +- .+...-|. ..-...+-
T Consensus 93 ~G~AaSmgs~l~~aG~~g~r~~lPnsrimIHqP~-gg~~G~a-~Di~i~A~ei~~~~~~l~~i~a~~TGq~~e~i~~d~d 170 (200)
T COG0740 93 MGQAASMGSVLLMAGDKGKRFALPNARIMIHQPS-GGAQGQA-SDIEIHAREILKIKERLNRIYAEHTGQTLEKIEKDTD 170 (200)
T ss_pred ecHHHhHHHHHHhcCCCCCceeCCCceEEEecCC-ccCccCH-HHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHhhc
Confidence 999999999999999885 77777776654443 2221111 10 11111122 22234444
Q ss_pred cCCCCCHHHHHHcCCcceecCchH
Q 007805 165 LSKSITSEEGWKLGLIDAVVTSEE 188 (589)
Q Consensus 165 tg~~~~a~~A~~~Glv~~vv~~~~ 188 (589)
....++|+||+++||||+|....+
T Consensus 171 rd~~msa~eA~~yGLiD~V~~~~~ 194 (200)
T COG0740 171 RDTWMSAEEAKEYGLIDKVIESRE 194 (200)
T ss_pred ccccCCHHHHHHcCCcceeccccc
Confidence 667799999999999999986543
No 315
>PTZ00325 malate dehydrogenase; Provisional
Probab=97.32 E-value=0.00075 Score=69.31 Aligned_cols=35 Identities=26% Similarity=0.266 Sum_probs=30.7
Q ss_pred CccceEEEEcC-CCCcHHHHHHHHhCC--CeEEEEeCC
Q 007805 306 RGVRKVAVIGG-GLMGSGIATAHILNN--IYVVLKEVN 340 (589)
Q Consensus 306 ~~~~kI~IIG~-G~mG~~iA~~l~~~G--~~V~~~d~~ 340 (589)
..|+||+|||+ |.+|+.+|..++..+ .+++++|++
T Consensus 6 ~~~~KI~IiGaaG~VGs~~a~~l~~~~~~~elvL~Di~ 43 (321)
T PTZ00325 6 LKMFKVAVLGAAGGIGQPLSLLLKQNPHVSELSLYDIV 43 (321)
T ss_pred CCCCEEEEECCCCHHHHHHHHHHhcCCCCCEEEEEecC
Confidence 46789999999 999999999999665 589999993
No 316
>TIGR00705 SppA_67K signal peptide peptidase SppA, 67K type. E. coli SohB, which is most closely homologous to the C-terminal duplication of SppA, is predicted to perform a similar function of small peptide degradation, but in the periplasm. Many prokaryotes have a single SppA/SohB homolog that may perform the function of either or both.
Probab=97.31 E-value=0.0044 Score=69.13 Aligned_cols=104 Identities=16% Similarity=0.178 Sum_probs=72.5
Q ss_pred cCcEEEEEeCC-C--C---CCCCC----------HHHHHHHHHHHHHHhcCCCceEEEEEcCCCCCcCCCCchhhhhccC
Q 007805 12 NDGVAIITLIN-P--P---VNALA----------IPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHG 75 (589)
Q Consensus 12 ~~~v~~i~l~~-p--~---~N~l~----------~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~ 75 (589)
++.+.+|-++. + + .+.+. .-.+.++.++++.+..|+.|++|||.-.+ +.|.++..+.
T Consensus 41 ~~~~L~l~~~gg~i~e~~~~~~~~~~~~~~~~~~~~~l~~i~~~i~~A~~D~~IkgIvL~i~~---~~g~~~~~~~---- 113 (584)
T TIGR00705 41 SSGALLLDLPVGDVTDQSPRVSLQGTLLGNPKGRAISLFDIVNAIRQAADDRRIEGLVFDLSN---FSGWDSPHLV---- 113 (584)
T ss_pred CCeEEEEECCCCcccCcCCCCchhhhhccCCCcCCcCHHHHHHHHHHHhcCCCceEEEEEccC---CCCCCHHHHH----
Confidence 56788888873 3 1 23221 23578999999999999999999997542 1233322211
Q ss_pred CCcccccchhHHHHHHHHHHhCCCcEEEEeCCcccchhhHHhhhcCEEEEeCCceEec
Q 007805 76 AGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGL 133 (589)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~l~~~~kp~iaav~G~a~GgG~~lala~D~~ia~~~a~~~~ 133 (589)
...+.+ ..+....|||||..++.+ -+|+-|+.+||-+++.+.+.+++
T Consensus 114 ---------ei~~ai-~~fk~sgKpVvA~~~~~~-s~~YylAs~AD~I~~~p~G~v~~ 160 (584)
T TIGR00705 114 ---------EIGSAL-SEFKDSGKPVYAYGTNYS-QGQYYLASFADEIILNPMGSVDL 160 (584)
T ss_pred ---------HHHHHH-HHHHhcCCeEEEEEcccc-chhhhhhhhCCEEEECCCceEEe
Confidence 112333 346678899999888765 78999999999999999887754
No 317
>cd05298 GH4_GlvA_pagL_like Glycoside Hydrolases Family 4; GlvA- and pagL-like glycosidases. Bacillus subtilis GlvA and Clostridium acetobutylicum pagL are 6-phospho-alpha-glucosidase, catalyzing the hydrolysis of alpha-glucopyranoside bonds to release glucose from oligosaccharides. The substrate specificities of other members of this subgroup are unknown. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP_PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases, which include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. Members of this subfamily are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductas
Probab=97.30 E-value=0.0017 Score=69.66 Aligned_cols=75 Identities=23% Similarity=0.257 Sum_probs=51.0
Q ss_pred ceEEEEcCCCC-cHHHHHHHHhC-----CCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc
Q 007805 309 RKVAVIGGGLM-GSGIATAHILN-----NIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY 382 (589)
Q Consensus 309 ~kI~IIG~G~m-G~~iA~~l~~~-----G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~ 382 (589)
+||+|||+|.. +..+...+++. +-+|+++|+++++++.... ...+..++...+ -++..++|.
T Consensus 1 ~KI~iIGaGS~~tp~li~~l~~~~~~l~~~ei~L~DId~~rl~~v~~----l~~~~~~~~g~~--------~~v~~Ttdr 68 (437)
T cd05298 1 FKIVIAGGGSTYTPGIVKSLLDRKEDFPLRELVLYDIDAERQEKVAE----AVKILFKENYPE--------IKFVYTTDP 68 (437)
T ss_pred CeEEEECCcHHHHHHHHHHHHhCcccCCCCEEEEECCCHHHHHHHHH----HHHHHHHhhCCC--------eEEEEECCH
Confidence 48999999875 33455555543 3589999999999877332 222233322111 257788888
Q ss_pred -cCCCCCCEEEEec
Q 007805 383 -SEFKDVDMVIEAV 395 (589)
Q Consensus 383 -~~~~~aDlVIeav 395 (589)
+++++||+||.++
T Consensus 69 ~eAl~gADfVi~~i 82 (437)
T cd05298 69 EEAFTDADFVFAQI 82 (437)
T ss_pred HHHhCCCCEEEEEe
Confidence 8999999999766
No 318
>KOG0069 consensus Glyoxylate/hydroxypyruvate reductase (D-isomer-specific 2-hydroxy acid dehydrogenase superfamily) [Energy production and conversion]
Probab=97.27 E-value=0.0014 Score=66.89 Aligned_cols=105 Identities=12% Similarity=0.040 Sum_probs=73.1
Q ss_pred CccceEEEEcCCCCcHHHHHHHHhCCCeEEEE-eCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCccC
Q 007805 306 RGVRKVAVIGGGLMGSGIATAHILNNIYVVLK-EVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSE 384 (589)
Q Consensus 306 ~~~~kI~IIG~G~mG~~iA~~l~~~G~~V~~~-d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~ 384 (589)
..=++|+|+|+|.+|..+|+.|...| .++.| .|++...+...+. + . ...+..+.
T Consensus 160 ~~gK~vgilG~G~IG~~ia~rL~~Fg-~~i~y~~r~~~~~~~~~~~-----------~-----------~--~~~d~~~~ 214 (336)
T KOG0069|consen 160 LEGKTVGILGLGRIGKAIAKRLKPFG-CVILYHSRTQLPPEEAYEY-----------Y-----------A--EFVDIEEL 214 (336)
T ss_pred ccCCEEEEecCcHHHHHHHHhhhhcc-ceeeeecccCCchhhHHHh-----------c-----------c--cccCHHHH
Confidence 34579999999999999999999999 55555 5554443332110 0 0 01122266
Q ss_pred CCCCCEEEEeccCChHHHHHHHHHHHHhCCCCcEEEecCCCCCHH--HHhccc
Q 007805 385 FKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLN--IVGEKT 435 (589)
Q Consensus 385 ~~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~--~~~~~~ 435 (589)
+.++|+|+.|.|-..+...-+=+++...++++++|+...-+-.+. ++.+.+
T Consensus 215 ~~~sD~ivv~~pLt~~T~~liNk~~~~~mk~g~vlVN~aRG~iide~~l~eaL 267 (336)
T KOG0069|consen 215 LANSDVIVVNCPLTKETRHLINKKFIEKMKDGAVLVNTARGAIIDEEALVEAL 267 (336)
T ss_pred HhhCCEEEEecCCCHHHHHHhhHHHHHhcCCCeEEEeccccccccHHHHHHHH
Confidence 899999999999888877777788999999999887666554433 344443
No 319
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=97.26 E-value=0.00047 Score=71.92 Aligned_cols=77 Identities=27% Similarity=0.252 Sum_probs=55.2
Q ss_pred cceEEEEcCCCCcHHHHHHHHhCC-CeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCC--c-c
Q 007805 308 VRKVAVIGGGLMGSGIATAHILNN-IYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLD--Y-S 383 (589)
Q Consensus 308 ~~kI~IIG~G~mG~~iA~~l~~~G-~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~--~-~ 383 (589)
|++|.|||+|.+|+.+|..|+++| .+|++-||++++++++..... +++... .+.+.+. + +
T Consensus 1 m~~ilviGaG~Vg~~va~~la~~~d~~V~iAdRs~~~~~~i~~~~~---------~~v~~~-------~vD~~d~~al~~ 64 (389)
T COG1748 1 MMKILVIGAGGVGSVVAHKLAQNGDGEVTIADRSKEKCARIAELIG---------GKVEAL-------QVDAADVDALVA 64 (389)
T ss_pred CCcEEEECCchhHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhhcc---------ccceeE-------EecccChHHHHH
Confidence 578999999999999999999999 899999999999888644221 111100 0111111 1 5
Q ss_pred CCCCCCEEEEeccCChH
Q 007805 384 EFKDVDMVIEAVIESVP 400 (589)
Q Consensus 384 ~~~~aDlVIeavpe~~~ 400 (589)
.+++.|+||.|+|....
T Consensus 65 li~~~d~VIn~~p~~~~ 81 (389)
T COG1748 65 LIKDFDLVINAAPPFVD 81 (389)
T ss_pred HHhcCCEEEEeCCchhh
Confidence 57888999999995443
No 320
>cd05197 GH4_glycoside_hydrolases Glycoside Hydrases Family 4. Glycoside hydrolases cleave glycosidic bonds to release smaller sugars from oligo- or polysaccharides. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by GH4 glycoside hydrolases. Other organisms (such as archaea and Thermotoga maritima) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. GH4 family members include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. They require two cofactors, NAD+ and a divalent metal (Mn2+, Ni2+, Mg2+), for activity. Some also require reducing conditions. GH4 glycoside hydrolases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families in
Probab=97.25 E-value=0.0019 Score=69.07 Aligned_cols=75 Identities=21% Similarity=0.263 Sum_probs=50.9
Q ss_pred ceEEEEcCCCC-cHHHHHHHHhC-----CCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc
Q 007805 309 RKVAVIGGGLM-GSGIATAHILN-----NIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY 382 (589)
Q Consensus 309 ~kI~IIG~G~m-G~~iA~~l~~~-----G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~ 382 (589)
.||+|||+|.- ...+...+++. +-+|+++|+++++++....-.+ +..+....+ -++..++|.
T Consensus 1 ~KI~iIGgGS~~tp~li~~l~~~~~~l~~~ei~L~Did~~Rl~~v~~l~~----~~~~~~g~~--------~~v~~ttD~ 68 (425)
T cd05197 1 VKIAIIGGGSSFTPELVSGLLKTPEELPISEVTLYDIDEERLDIILTIAK----RYVEEVGAD--------IKFEKTMDL 68 (425)
T ss_pred CEEEEECCchHhHHHHHHHHHcChhhCCCCEEEEEcCCHHHHHHHHHHHH----HHHHhhCCC--------eEEEEeCCH
Confidence 48999999874 44555555543 3589999999999887433222 222322111 247788888
Q ss_pred -cCCCCCCEEEEec
Q 007805 383 -SEFKDVDMVIEAV 395 (589)
Q Consensus 383 -~~~~~aDlVIeav 395 (589)
+++++||+||.++
T Consensus 69 ~~Al~gADfVi~~i 82 (425)
T cd05197 69 EDAIIDADFVINQF 82 (425)
T ss_pred HHHhCCCCEEEEee
Confidence 8899999999766
No 321
>KOG1495 consensus Lactate dehydrogenase [Energy production and conversion]
Probab=97.23 E-value=0.0014 Score=63.56 Aligned_cols=104 Identities=25% Similarity=0.338 Sum_probs=69.1
Q ss_pred ccceEEEEcCCCCcHHHHHHHHhCCC--eEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCccC
Q 007805 307 GVRKVAVIGGGLMGSGIATAHILNNI--YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSE 384 (589)
Q Consensus 307 ~~~kI~IIG~G~mG~~iA~~l~~~G~--~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~ 384 (589)
...||.|||.|..|.+.|..++.+|. ++.++|.++++++-..=.+ +.|.. --...++....|+..
T Consensus 19 ~~~KItVVG~G~VGmAca~siL~k~Ladel~lvDv~~dklkGE~MDL--------qH~s~-----f~~~~~V~~~~Dy~~ 85 (332)
T KOG1495|consen 19 KHNKITVVGVGQVGMACAISILLKGLADELVLVDVNEDKLKGEMMDL--------QHGSA-----FLSTPNVVASKDYSV 85 (332)
T ss_pred cCceEEEEccchHHHHHHHHHHHhhhhhceEEEecCcchhhhhhhhh--------ccccc-----cccCCceEecCcccc
Confidence 36799999999999999999998886 8999999998766532111 11110 011245667778888
Q ss_pred CCCCCEEEEeccC--------------ChHHHHHHHHHHHHhCCCCcEEEecCC
Q 007805 385 FKDVDMVIEAVIE--------------SVPLKQKIFSELEKACPPHCILATNTS 424 (589)
Q Consensus 385 ~~~aDlVIeavpe--------------~~~~k~~v~~~l~~~~~~~~ii~s~ts 424 (589)
-+++++||...-- +.++.+.++.++.++ +|++++...+.
T Consensus 86 sa~S~lvIiTAGarq~~gesRL~lvQrNV~ifK~iip~lv~y-Spd~~llvvSN 138 (332)
T KOG1495|consen 86 SANSKLVIITAGARQSEGESRLDLVQRNVDIFKAIIPALVKY-SPDCILLVVSN 138 (332)
T ss_pred cCCCcEEEEecCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhc-CCCeEEEEecC
Confidence 8999999987633 233333444444444 56776654443
No 322
>PRK12552 ATP-dependent Clp protease-like protein; Reviewed
Probab=97.23 E-value=0.0071 Score=58.28 Aligned_cols=143 Identities=19% Similarity=0.216 Sum_probs=95.4
Q ss_pred CCCHHHHHHHHHHHHHHhcCCCce--EEEEEcCCCCCcCCCCchhhhhccCCCcccccchhHHHHHHHHHHhCCCcEEEE
Q 007805 27 ALAIPIVAGLKDKFEEATSRDDVK--AIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAA 104 (589)
Q Consensus 27 ~l~~~~~~~l~~~l~~~~~~~~v~--~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kp~iaa 104 (589)
.++.++-+.+...+-.++.++..+ -+-|-+.|+...+|-=+.. .......+ +.+...+-||...
T Consensus 48 ~~~~~~a~~iiaqLl~L~~~~~~k~I~lyINSpGGsv~~G~~iG~-------------v~~glaIy-D~m~~ik~~V~Tv 113 (222)
T PRK12552 48 QVGMDVTELIIAQLLYLEFDDPEKPIYFYINSTGTSWYTGDAIGF-------------ETEAFAIC-DTMRYIKPPVHTI 113 (222)
T ss_pred chhHhHHHHHHHHHHHHhccCCCCCEEEEEeCCCCCccccccccc-------------cccHHHHH-HHHHhcCCCeEEE
Confidence 455568999988888887554323 2333555655555511100 01123556 6788888999999
Q ss_pred eCCcccchhhHHhhhcCE--EEEeCCceEeccccccCCCCChhhhh------------------hHhhhcC--HHHHHHH
Q 007805 105 VEGLALGGGLELAMGCHA--RIAAPKTQLGLPELTLGVIPGFGGTQ------------------RLPRLVG--LSKAIEM 162 (589)
Q Consensus 105 v~G~a~GgG~~lala~D~--~ia~~~a~~~~pe~~~Gl~p~~g~~~------------------~l~~~~G--~~~a~~l 162 (589)
+-|.|.+.+.-|++++|- |++.+++++-+....-|.. |.+. .+...-| ...-.++
T Consensus 114 ~~G~AaS~AslIl~aG~kg~R~alpns~iMIHqP~~~~~---G~A~di~~~a~el~~~r~~l~~iya~~TG~~~e~I~~d 190 (222)
T PRK12552 114 CIGQAMGTAAMILSAGTKGQRASLPHATIVLHQPRSGAR---GQATDIQIRAKEVLHNKRTMLEILSRNTGQTVEKLSKD 190 (222)
T ss_pred EEeehhhHHHHHHhCCCCCceecCCCcEEEeccCCcccc---cCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHH
Confidence 999999999999999995 8999999988766654431 2111 1122222 2334455
Q ss_pred HHcCCCCCHHHHHHcCCcceecCc
Q 007805 163 MLLSKSITSEEGWKLGLIDAVVTS 186 (589)
Q Consensus 163 ~ltg~~~~a~~A~~~Glv~~vv~~ 186 (589)
+-....++|+||+++||||+|+.+
T Consensus 191 ~~rd~wmsA~EA~eyGliD~Ii~~ 214 (222)
T PRK12552 191 TDRMFYLTPQEAKEYGLIDRVLES 214 (222)
T ss_pred hcCCCcCCHHHHHHcCCCcEEecc
Confidence 556677999999999999999854
No 323
>PTZ00075 Adenosylhomocysteinase; Provisional
Probab=97.21 E-value=0.00069 Score=72.37 Aligned_cols=87 Identities=21% Similarity=0.226 Sum_probs=62.0
Q ss_pred ceEEEEcCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cCCCC
Q 007805 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD 387 (589)
Q Consensus 309 ~kI~IIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~ 387 (589)
++|+|||.|.+|..+|..+...|.+|+++|+++.+...+.. .| ... .++ +.++.
T Consensus 255 KtVgVIG~G~IGr~vA~rL~a~Ga~ViV~e~dp~~a~~A~~-----------~G-------------~~~-~~leell~~ 309 (476)
T PTZ00075 255 KTVVVCGYGDVGKGCAQALRGFGARVVVTEIDPICALQAAM-----------EG-------------YQV-VTLEDVVET 309 (476)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchhHHHHHh-----------cC-------------cee-ccHHHHHhc
Confidence 68999999999999999999999999999999876543211 11 111 122 55789
Q ss_pred CCEEEEeccCChHHHHHHH-HHHHHhCCCCcEEEecCCC
Q 007805 388 VDMVIEAVIESVPLKQKIF-SELEKACPPHCILATNTST 425 (589)
Q Consensus 388 aDlVIeavpe~~~~k~~v~-~~l~~~~~~~~ii~s~ts~ 425 (589)
+|+||.++. . +.++ .+..+.++++++++..+..
T Consensus 310 ADIVI~atG-t----~~iI~~e~~~~MKpGAiLINvGr~ 343 (476)
T PTZ00075 310 ADIFVTATG-N----KDIITLEHMRRMKNNAIVGNIGHF 343 (476)
T ss_pred CCEEEECCC-c----ccccCHHHHhccCCCcEEEEcCCC
Confidence 999999974 2 2334 3555668899988654443
No 324
>TIGR03134 malonate_gamma malonate decarboxylase, gamma subunit. Members of this protein family are the gamma subunit of malonate decarboxylase. Malonate decarboxylase may be a soluble enzyme, or linked to membrane subunits and active as a sodium pump. In the malonate decarboxylase complex, the beta subunit appears to act as a malonyl-CoA decarboxylase, while the gamma subunit appears either to mediate subunit interaction or to act as a co-decarboxylase with the beta subunit. The beta and gamma subunits exhibit some local sequence similarity.
Probab=97.21 E-value=0.027 Score=55.12 Aligned_cols=157 Identities=15% Similarity=0.130 Sum_probs=90.9
Q ss_pred CCCHHHHHHHHHHHHHH-hcCCCceEEEEEcCCCCCcCCCCchhhhhccCCCcccccchhHHHHHHHHHHhCCCcEEEEe
Q 007805 27 ALAIPIVAGLKDKFEEA-TSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAV 105 (589)
Q Consensus 27 ~l~~~~~~~l~~~l~~~-~~~~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kp~iaav 105 (589)
.++.+--..+...+... +++..+-+|.|-=. +.|-.|..-++..- .....+.. ..+ ....+.+.|+|+.|
T Consensus 44 ~~g~~~~~k~A~~v~~~~d~~f~~PIv~lvDt-pG~~~g~~aE~~G~------~~a~A~l~-~a~-a~a~~~~vP~IsvI 114 (238)
T TIGR03134 44 EVGLDEALALAQAVLDVIEADDKRPIVVLVDT-PSQAYGRREELLGI------NQALAHLA-KAL-ALARLAGHPVIGLI 114 (238)
T ss_pred cCChHHHHHHHHHHHHHHHhcCCCCEEEEEeC-CCCCCCHHHHHHHH------HHHHHHHH-HHH-HHhhcCCCCEEEEE
Confidence 68877888888888875 55566656666433 22433433222110 11111111 222 22445669999999
Q ss_pred CCcccchhh-HHhhhcCEEEEeCCceEeccccccCCCCChhhhhhHhhhcCHHHHHHHHHcC--CCCCHHHHHHcCCcce
Q 007805 106 EGLALGGGL-ELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLS--KSITSEEGWKLGLIDA 182 (589)
Q Consensus 106 ~G~a~GgG~-~lala~D~~ia~~~a~~~~pe~~~Gl~p~~g~~~~l~~~~G~~~a~~l~ltg--~~~~a~~A~~~Glv~~ 182 (589)
-|.++|||+ .+.+.+|.++|.+++.+ +.++.-+++..+-+-. ..+.++.-+= ...+.+.+.++|+||+
T Consensus 115 ~g~a~ggg~lamg~~ad~v~Alp~A~i-------~vm~~e~aa~I~~~~~--~~~~e~a~~~~~~a~~~~~~~~~G~vd~ 185 (238)
T TIGR03134 115 YGKAISGAFLAHGLQADRIIALPGAMV-------HVMDLESMARVTKRSV--EELEALAKSSPVFAPGIENFVKLGGVHA 185 (238)
T ss_pred eCCccHHHHHHHccCcCeEEEcCCcEE-------EecCHHHHHHHHccCH--hHHHHHHHhhhhhccCHHHHHhCCCccE
Confidence 999998886 45556888877766655 4555555555454433 3344443332 2457778999999999
Q ss_pred ecCchHHHHHHHHHHHHHH
Q 007805 183 VVTSEELLKVSRLWALDIA 201 (589)
Q Consensus 183 vv~~~~l~~~a~~~a~~la 201 (589)
|+++.+-..-+.+++.-++
T Consensus 186 vi~~~~~~~~~~~~~~~~~ 204 (238)
T TIGR03134 186 LLDVADADAPAAQLAAVLA 204 (238)
T ss_pred EeCCCCcccHHHHHHHHHH
Confidence 9976553222244444433
No 325
>COG0059 IlvC Ketol-acid reductoisomerase [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=97.20 E-value=0.0054 Score=60.82 Aligned_cols=182 Identities=16% Similarity=0.111 Sum_probs=104.3
Q ss_pred cceEEEEcCCCCcHHHHHHHHhCCCeEEEEeCChHH-HHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCccCCC
Q 007805 308 VRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEY-LLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFK 386 (589)
Q Consensus 308 ~~kI~IIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~-~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~ 386 (589)
-++|+|||.|.-|.+=|..|..+|.+|++--+.... -++| .+.| +...+-.++++
T Consensus 18 gK~iaIIGYGsQG~ahalNLRDSGlnViiGlr~g~~s~~kA-----------~~dG-------------f~V~~v~ea~k 73 (338)
T COG0059 18 GKKVAIIGYGSQGHAQALNLRDSGLNVIIGLRKGSSSWKKA-----------KEDG-------------FKVYTVEEAAK 73 (338)
T ss_pred CCeEEEEecChHHHHHHhhhhhcCCcEEEEecCCchhHHHH-----------HhcC-------------CEeecHHHHhh
Confidence 369999999999999999999999998866554333 3332 2222 33333338899
Q ss_pred CCCEEEEeccCChHHHHHHHH-HHHHhCCCCcEEEecCCCCCHHHHhcccCCCCcEEEecCCCCC----------CCCCe
Q 007805 387 DVDMVIEAVIESVPLKQKIFS-ELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPA----------HVMPL 455 (589)
Q Consensus 387 ~aDlVIeavpe~~~~k~~v~~-~l~~~~~~~~ii~s~ts~~~~~~~~~~~~~~~r~ig~h~~~p~----------~~~~l 455 (589)
.||+|+.-+|+.. -.++++ +|.+.++.+..+.- +.++.+..-.-..+....++-.-|-.|- .-.|.
T Consensus 74 ~ADvim~L~PDe~--q~~vy~~~I~p~Lk~G~aL~F-aHGfNihf~~i~ppkdvdV~MVAPKgPG~~VR~~y~~G~GvP~ 150 (338)
T COG0059 74 RADVVMILLPDEQ--QKEVYEKEIAPNLKEGAALGF-AHGFNIHFGLIVPPKDVDVIMVAPKGPGHLVRREYKEGFGVPA 150 (338)
T ss_pred cCCEEEEeCchhh--HHHHHHHHhhhhhcCCceEEe-ccccceecceecCCccCcEEEEcCCCCcHHHHHHHHccCCcee
Confidence 9999999999554 457777 89999999987642 2233322110000111112222222221 11122
Q ss_pred eeEecCCCCCHHHHHHHHHHHHHcCCe---eEEE--cC--CCCccccc-c----cHHHHHHHH-HHHHcCCCHHH
Q 007805 456 LEIVRTERTSAQVILDLMTVGKIIKKV---PVVV--GN--CTGFAVNR-A----FFPYSQSAR-LLVSLGVDVFR 517 (589)
Q Consensus 456 veiv~~~~t~~e~~~~~~~l~~~lG~~---~v~v--~d--~~Gfi~nR-i----~~~~~~Ea~-~l~~~Gv~~~~ 517 (589)
+.-+. ...+-.+.+.+..+.+.+|.. ++-. ++ ..-.+..+ + +..++.-++ -|+|.|.+|+-
T Consensus 151 LiAV~-qD~sG~a~~~Ala~AkgiGg~RaGvieTTFkeEtetDLfGEQ~vLcGgl~~li~agfetLvEaGy~PE~ 224 (338)
T COG0059 151 LIAVH-QDASGKALDIALAYAKGIGGTRAGVIETTFKEETETDLFGEQAVLCGGLQALIKAGFETLVEAGYQPEL 224 (338)
T ss_pred EEEEE-eCCCchHHHHHHHHHHhcCCCccceEeeeeHHhhhcccccchhhhhhHHHHHHHHHHHHHHHcCCCHHH
Confidence 22222 223556788889999999843 2222 11 12223333 2 334455555 55688998874
No 326
>TIGR01758 MDH_euk_cyt malate dehydrogenase, NAD-dependent. This model represents the NAD-dependent cytosolic malate dehydrogenase from eukaryotes. The enzyme from pig has been studied by X-ray crystallography
Probab=97.19 E-value=0.0011 Score=68.35 Aligned_cols=100 Identities=18% Similarity=0.229 Sum_probs=61.7
Q ss_pred eEEEEcC-CCCcHHHHHHHHhCCC-------eEEEEeCChHH-HHHHHHHHHHHHHhhHhcCCCCHHHHH-HHhhccccc
Q 007805 310 KVAVIGG-GLMGSGIATAHILNNI-------YVVLKEVNSEY-LLKGIKTIEANVRGLVTRGKLTQDKAN-NALKMLKGV 379 (589)
Q Consensus 310 kI~IIG~-G~mG~~iA~~l~~~G~-------~V~~~d~~~~~-~~~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~i~~~ 379 (589)
||+|||+ |.+|+++|..++..|. +++++|++++. ...+.. ++-.+.. .....+..+
T Consensus 1 ~V~IiGaaG~VG~~~a~~l~~~~~~~~~~e~el~LiD~~~~~~~a~g~~--------------~Dl~d~~~~~~~~~~~~ 66 (324)
T TIGR01758 1 RVVVTGAAGQIGYALLPMIARGRMLGKDQPIILHLLDIPPAMKVLEGVV--------------MELMDCAFPLLDGVVPT 66 (324)
T ss_pred CEEEECCCcHHHHHHHHHHHhccccCCCCccEEEEEecCCcccccceeE--------------eehhcccchhcCceecc
Confidence 6999999 9999999999998654 59999996543 111100 0000010 011223333
Q ss_pred -CCccCCCCCCEEEEec--cC------------ChHHHHHHHHHHHHhCCCCcEEEecC
Q 007805 380 -LDYSEFKDVDMVIEAV--IE------------SVPLKQKIFSELEKACPPHCILATNT 423 (589)
Q Consensus 380 -~~~~~~~~aDlVIeav--pe------------~~~~k~~v~~~l~~~~~~~~ii~s~t 423 (589)
.+++++++||+||.+. |. +..+.+++..+|.++.+++++++..|
T Consensus 67 ~~~~~~~~~aDiVVitAG~~~~~~~tr~~ll~~N~~i~k~i~~~i~~~~~~~~iiivvs 125 (324)
T TIGR01758 67 HDPAVAFTDVDVAILVGAFPRKEGMERRDLLSKNVKIFKEQGRALDKLAKKDCKVLVVG 125 (324)
T ss_pred CChHHHhCCCCEEEEcCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEeC
Confidence 3368899999999866 22 22234556666777776777776555
No 327
>TIGR00745 apbA_panE 2-dehydropantoate 2-reductase. This model describes enzymes that perform as 2-dehydropantoate 2-reductase, one of four enzymes required for the de novo biosynthesis of pantothenate (vitamin B5) from Asp and 2-oxoisovalerate. Although few members of the seed alignment are characterized experimentally, nearly all from complete genomes are found in a genome-wide (but not local) context of all three other pantothenate-biosynthetic enzymes (TIGR00222, TIGR00018, TIGR00223). The gene encoding this enzyme is designated apbA in Salmonella typhimurium and panE in Escherichia coli; this protein functions as a monomer and functions in the alternative pyrimidine biosynthetic, or APB, pathway, used to synthesize the pyrimidine moiety of thiamine. Note, synthesis of the pyrimidine moiety of thiamine occurs either via the first five steps in de novo purine biosynthesis, which uses the pur gene products, or through the APB pathway. Note that this family includes both NADH and NADPH
Probab=97.18 E-value=0.0019 Score=65.83 Aligned_cols=155 Identities=14% Similarity=0.032 Sum_probs=86.5
Q ss_pred CcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCC-CCHHHHHHHhhcccccCCccCCCCCCEEEEeccC
Q 007805 319 MGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGK-LTQDKANNALKMLKGVLDYSEFKDVDMVIEAVIE 397 (589)
Q Consensus 319 mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~-~~~~~~~~~~~~i~~~~~~~~~~~aDlVIeavpe 397 (589)
||+.+|..|+++|++|++++++ +..+... +.|. +...........+..+++++.+..+|+||.|++.
T Consensus 2 iG~~~a~~L~~~G~~V~l~~r~-~~~~~i~-----------~~Gl~i~~~~~~~~~~~~~~~~~~~~~~~~D~iiv~vKs 69 (293)
T TIGR00745 2 VGSLYGAYLARAGHDVTLLARG-EQLEALN-----------QEGLRIVSLGGEFQFRPVSAATSPEELPPADLVIITVKA 69 (293)
T ss_pred chHHHHHHHHhCCCcEEEEecH-HHHHHHH-----------HCCcEEEecCCcEEEcccccccChhhcCCCCEEEEeccc
Confidence 7999999999999999999997 4444321 1121 0000000000022344555557789999999974
Q ss_pred ChHHHHHHHHHHHHhCCCCcEEEecCCCCCHH-HHhcccCCCCcEEEecCCCCC-CCCCe-ee--------EecCCCCCH
Q 007805 398 SVPLKQKIFSELEKACPPHCILATNTSTIDLN-IVGEKTSSQDRIIGAHFFSPA-HVMPL-LE--------IVRTERTSA 466 (589)
Q Consensus 398 ~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~-~~~~~~~~~~r~ig~h~~~p~-~~~~l-ve--------iv~~~~t~~ 466 (589)
. -..++++.+.+++.++++|++...++... .+...++. .+++......+. ...+. ++ +-..+. +.
T Consensus 70 ~--~~~~~l~~l~~~l~~~~~iv~~qNG~g~~~~l~~~~~~-~~v~~g~~~~~~~~~~pg~v~~~~~~~~~iG~~~~-~~ 145 (293)
T TIGR00745 70 Y--QTEEAAALLLPLIGKNTKVLFLQNGLGHEERLRELLPA-RRILGGVVTHGAVREEPGVVHHAGLGATKIGDYVG-EN 145 (293)
T ss_pred h--hHHHHHHHhHhhcCCCCEEEEccCCCCCHHHHHHHhCc-cCEEEEEEEEeeEEcCCcEEEEeccccEEEecCCC-ch
Confidence 3 35677889999999999888777776543 34444432 233332211111 11111 11 111111 22
Q ss_pred HHHHHHHHHHHHcCCeeEEEcCC
Q 007805 467 QVILDLMTVGKIIKKVPVVVGNC 489 (589)
Q Consensus 467 e~~~~~~~l~~~lG~~~v~v~d~ 489 (589)
+..+.+.+++...|..+....|.
T Consensus 146 ~~~~~l~~~l~~~~~~~~~~~di 168 (293)
T TIGR00745 146 EAVEALAELLNEAGIPAELHGDI 168 (293)
T ss_pred HHHHHHHHHHHhCCCCCEecchH
Confidence 55667777777777665554443
No 328
>CHL00174 accD acetyl-CoA carboxylase beta subunit; Reviewed
Probab=97.18 E-value=0.024 Score=56.82 Aligned_cols=145 Identities=16% Similarity=0.140 Sum_probs=89.8
Q ss_pred CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCCcCCCCchhhhhccCCCcccccchhHHHHHHHHHHhCCCcEEEE
Q 007805 25 VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAA 104 (589)
Q Consensus 25 ~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kp~iaa 104 (589)
.-++....-+.+.++++.+... .+-+|+++..|+ +-+++-. .....+.+.. ..+.+....-..|.|++
T Consensus 146 gGSmG~v~geKi~ra~e~A~~~-rlPlV~l~~SGG-----ARmQEg~-----~sL~qmak~s-aa~~~~~~~~~vP~Isv 213 (296)
T CHL00174 146 GGSMGSVVGEKITRLIEYATNE-SLPLIIVCASGG-----ARMQEGS-----LSLMQMAKIS-SALYDYQSNKKLFYISI 213 (296)
T ss_pred ccCcCHHHHHHHHHHHHHHHHc-CCCEEEEECCCC-----ccccccc-----hhhhhhHHHH-HHHHHHHHcCCCCEEEE
Confidence 4889999999999999998765 355777765443 3322200 0011111111 11212122567999999
Q ss_pred eCCcccchhhHH-hhhcCEEEEeCCceEeccccccCCCCChhhhhhHhhhcCHHHHHHHHHcCCCCCHHHHHHcCCccee
Q 007805 105 VEGLALGGGLEL-AMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAV 183 (589)
Q Consensus 105 v~G~a~GgG~~l-ala~D~~ia~~~a~~~~pe~~~Gl~p~~g~~~~l~~~~G~~~a~~l~ltg~~~~a~~A~~~Glv~~v 183 (589)
+.|+|.||+... ++.||++|+.+++.+++.-.+ .....+|.. +.-..=+|+-.++.|+||.+
T Consensus 214 l~gPt~GG~aas~a~l~Diiiae~~A~IgfAGPr-----------VIe~t~ge~------lpe~fq~ae~l~~~G~vD~i 276 (296)
T CHL00174 214 LTSPTTGGVTASFGMLGDIIIAEPNAYIAFAGKR-----------VIEQTLNKT------VPEGSQAAEYLFDKGLFDLI 276 (296)
T ss_pred EcCCCchHHHHHHHHcccEEEEeCCeEEEeeCHH-----------HHHHhcCCc------CCcccccHHHHHhCcCceEE
Confidence 999999999865 777999999888876653221 000111100 01111257778899999999
Q ss_pred cCchHHHHHHHHHHH
Q 007805 184 VTSEELLKVSRLWAL 198 (589)
Q Consensus 184 v~~~~l~~~a~~~a~ 198 (589)
|+..++.+...++..
T Consensus 277 V~r~~lr~~l~~ll~ 291 (296)
T CHL00174 277 VPRNLLKGVLSELFQ 291 (296)
T ss_pred EcHHHHHHHHHHHHH
Confidence 999998877666554
No 329
>PRK08618 ornithine cyclodeaminase; Validated
Probab=97.17 E-value=0.0012 Score=68.51 Aligned_cols=93 Identities=15% Similarity=0.163 Sum_probs=64.2
Q ss_pred ceEEEEcCCCCcHHHHHHHHh-CCC-eEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cCC
Q 007805 309 RKVAVIGGGLMGSGIATAHIL-NNI-YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEF 385 (589)
Q Consensus 309 ~kI~IIG~G~mG~~iA~~l~~-~G~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~ 385 (589)
++|+|||+|.+|...+..++. .+. +|.+||+++++.++..+++...+ + -.+...++. +++
T Consensus 128 ~~v~iiGaG~~a~~~~~al~~~~~~~~v~v~~r~~~~a~~~~~~~~~~~------~-----------~~~~~~~~~~~~~ 190 (325)
T PRK08618 128 KTLCLIGTGGQAKGQLEAVLAVRDIERVRVYSRTFEKAYAFAQEIQSKF------N-----------TEIYVVNSADEAI 190 (325)
T ss_pred cEEEEECCcHHHHHHHHHHHhcCCccEEEEECCCHHHHHHHHHHHHHhc------C-----------CcEEEeCCHHHHH
Confidence 679999999999998877753 454 89999999998877654433111 1 012334554 568
Q ss_pred CCCCEEEEeccCChHHHHHHHHHHHHhCCCCcEEEecCCC
Q 007805 386 KDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTST 425 (589)
Q Consensus 386 ~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~ 425 (589)
+++|+||.|+|..- .++. ..+++++.|.+..|.
T Consensus 191 ~~aDiVi~aT~s~~----p~i~---~~l~~G~hV~~iGs~ 223 (325)
T PRK08618 191 EEADIIVTVTNAKT----PVFS---EKLKKGVHINAVGSF 223 (325)
T ss_pred hcCCEEEEccCCCC----cchH---HhcCCCcEEEecCCC
Confidence 99999999998553 3333 456888888766553
No 330
>PRK10949 protease 4; Provisional
Probab=97.16 E-value=0.0045 Score=69.10 Aligned_cols=84 Identities=18% Similarity=0.166 Sum_probs=59.2
Q ss_pred HHHHHHHHHHHHhcCCCceEEEEEcCCCCCcCCCCchhhhhccCCCcccccchhHHHHHHHHHHhCCCcEEEEeCCcccc
Q 007805 32 IVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALG 111 (589)
Q Consensus 32 ~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kp~iaav~G~a~G 111 (589)
.+.++.++++.+..|+.|++|||.-.+.. |.....+ +...+.+ ..++...||+||. ...+.-
T Consensus 96 ~l~div~~i~~Aa~D~rIkgivL~i~s~g---G~~~a~~-------------~eI~~ai-~~fk~sGKpVvA~-~~~~~s 157 (618)
T PRK10949 96 SLFDIVNTIRQAKDDRNITGIVLDLKNFA---GADQPSM-------------QYIGKAL-REFRDSGKPVYAV-GDSYSQ 157 (618)
T ss_pred cHHHHHHHHHHHhcCCCceEEEEEeCCCC---CccHHHH-------------HHHHHHH-HHHHHhCCeEEEE-ecCccc
Confidence 45689999999999999999999764321 2211111 1112333 4467788999985 555557
Q ss_pred hhhHHhhhcCEEEEeCCceEec
Q 007805 112 GGLELAMGCHARIAAPKTQLGL 133 (589)
Q Consensus 112 gG~~lala~D~~ia~~~a~~~~ 133 (589)
+++-||.+||-+++.+.+.+++
T Consensus 158 ~~YyLASaAD~I~l~P~G~v~~ 179 (618)
T PRK10949 158 GQYYLASFANKIYLSPQGVVDL 179 (618)
T ss_pred hhhhhhhhCCEEEECCCceEEE
Confidence 8999999999999998876654
No 331
>PRK08644 thiamine biosynthesis protein ThiF; Provisional
Probab=97.15 E-value=0.001 Score=64.33 Aligned_cols=104 Identities=21% Similarity=0.239 Sum_probs=59.6
Q ss_pred ceEEEEcCCCCcHHHHHHHHhCCC-eEEEEeCCh---HHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccc------
Q 007805 309 RKVAVIGGGLMGSGIATAHILNNI-YVVLKEVNS---EYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKG------ 378 (589)
Q Consensus 309 ~kI~IIG~G~mG~~iA~~l~~~G~-~V~~~d~~~---~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~------ 378 (589)
.+|+|||+|-+|+.+|..|+..|. +++++|.+. +.+.+- . .... .-|.-..+.....+..+..
T Consensus 29 ~~V~ViG~GglGs~ia~~La~~Gvg~i~lvD~D~ve~sNL~Rq---~--~~~~--dvG~~Ka~~a~~~l~~lnp~v~v~~ 101 (212)
T PRK08644 29 AKVGIAGAGGLGSNIAVALARSGVGNLKLVDFDVVEPSNLNRQ---Q--YFIS--QIGMPKVEALKENLLEINPFVEIEA 101 (212)
T ss_pred CCEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCEecccccccc---E--eehh--hCCChHHHHHHHHHHHHCCCCEEEE
Confidence 579999999999999999999998 599999882 222210 0 0000 0111111111111111111
Q ss_pred -----c-CCc-cCCCCCCEEEEeccCChHHHHHHHHHHHHhCCCCcEEE
Q 007805 379 -----V-LDY-SEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILA 420 (589)
Q Consensus 379 -----~-~~~-~~~~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~ 420 (589)
+ .+. +.++++|+||+|+ ++...+..+............|..
T Consensus 102 ~~~~i~~~~~~~~~~~~DvVI~a~-D~~~~r~~l~~~~~~~~~~p~I~~ 149 (212)
T PRK08644 102 HNEKIDEDNIEELFKDCDIVVEAF-DNAETKAMLVETVLEHPGKKLVAA 149 (212)
T ss_pred EeeecCHHHHHHHHcCCCEEEECC-CCHHHHHHHHHHHHHhCCCCEEEe
Confidence 0 011 3467899999995 577777777766665533333433
No 332
>cd00704 MDH Malate dehydrogenase. Malate dehydrogenase (MDH) is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. MDHs belong to the NAD-dependent, lactate dehydrogenase (LDH)-like, 2-hydroxycarboxylate dehydrogenase family, which also includes the GH4 family of glycoside hydrolases. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=97.14 E-value=0.00047 Score=71.05 Aligned_cols=100 Identities=17% Similarity=0.142 Sum_probs=62.5
Q ss_pred eEEEEcC-CCCcHHHHHHHHhCCC-------eEEEEeCCh--HHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccc-
Q 007805 310 KVAVIGG-GLMGSGIATAHILNNI-------YVVLKEVNS--EYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKG- 378 (589)
Q Consensus 310 kI~IIG~-G~mG~~iA~~l~~~G~-------~V~~~d~~~--~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~- 378 (589)
||+|||+ |.+|+.+|..++..|. +++++|+++ +.++.-...+..... ........
T Consensus 2 KV~IiGAaG~VG~~~a~~L~~~~~~~~~~~~~l~L~Di~~~~~~~~g~~~Dl~d~~~--------------~~~~~~~i~ 67 (323)
T cd00704 2 HVLITGAAGQIGYNLLFLIASGELFGDDQPVILHLLDIPPAMKALEGVVMELQDCAF--------------PLLKGVVIT 67 (323)
T ss_pred EEEEECCCcHHHHHHHHHHHhCCccCCCCceEEEEEecCCccCccceeeeehhhhcc--------------cccCCcEEe
Confidence 7999999 9999999999998664 599999987 432211111110000 00011122
Q ss_pred cCCccCCCCCCEEEEec--cC------------ChHHHHHHHHHHHHhCCCCcEEEecC
Q 007805 379 VLDYSEFKDVDMVIEAV--IE------------SVPLKQKIFSELEKACPPHCILATNT 423 (589)
Q Consensus 379 ~~~~~~~~~aDlVIeav--pe------------~~~~k~~v~~~l~~~~~~~~ii~s~t 423 (589)
..+++++++||+||.+. |. +..+.+++..+|.++++++++++..|
T Consensus 68 ~~~~~~~~~aDiVVitAG~~~~~g~tR~dll~~N~~i~~~i~~~i~~~~~~~~iiivvs 126 (323)
T cd00704 68 TDPEEAFKDVDVAILVGAFPRKPGMERADLLRKNAKIFKEQGEALNKVAKPTVKVLVVG 126 (323)
T ss_pred cChHHHhCCCCEEEEeCCCCCCcCCcHHHHHHHhHHHHHHHHHHHHHhCCCCeEEEEeC
Confidence 34458899999999765 22 33445666677888876666665544
No 333
>smart00859 Semialdhyde_dh Semialdehyde dehydrogenase, NAD binding domain. The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase, an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.
Probab=97.10 E-value=0.0027 Score=55.62 Aligned_cols=100 Identities=21% Similarity=0.207 Sum_probs=59.7
Q ss_pred eEEEEcC-CCCcHHHHHHHHhC-CCeEEEE-eCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhccccc-CCccCC
Q 007805 310 KVAVIGG-GLMGSGIATAHILN-NIYVVLK-EVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGV-LDYSEF 385 (589)
Q Consensus 310 kI~IIG~-G~mG~~iA~~l~~~-G~~V~~~-d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~-~~~~~~ 385 (589)
||+|||+ |.+|..++..+... +++++.+ +++.+..+.+.. ..+.+... ...... .+++ .
T Consensus 1 ki~iiG~~g~~g~~~~~~l~~~~~~~l~av~~~~~~~~~~~~~----------~~~~~~~~------~~~~~~~~~~~-~ 63 (122)
T smart00859 1 KVAIVGATGYVGQELLRLLAEHPDFEVVALAASARSAGKRVSE----------AGPHLKGE------VVLELEPEDFE-E 63 (122)
T ss_pred CEEEECCCChHHHHHHHHHhcCCCceEEEEEechhhcCcCHHH----------HCcccccc------cccccccCChh-h
Confidence 5899995 89999999999885 7887766 654322222110 00101000 000011 1112 2
Q ss_pred CCCCEEEEeccCChHHHHHHHHHHHHhCCCCcEEEecCCCCCH
Q 007805 386 KDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDL 428 (589)
Q Consensus 386 ~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~ 428 (589)
.++|+||.|+|.+.. .++...+...+.+++++++.++.+..
T Consensus 64 ~~~DvV~~~~~~~~~--~~~~~~~~~~~~~g~~viD~s~~~~~ 104 (122)
T smart00859 64 LAVDIVFLALPHGVS--KEIAPLLPKAAEAGVKVIDLSSAFRM 104 (122)
T ss_pred cCCCEEEEcCCcHHH--HHHHHHHHhhhcCCCEEEECCccccC
Confidence 589999999996653 34444455567889999998887664
No 334
>cd05296 GH4_P_beta_glucosidase Glycoside Hydrolases Family 4; Phospho-beta-glucosidase. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases such as the phospho-beta-glucosidases. Other organisms (such as archaea and Thermotoga maritima ) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. The 6-phospho-beta-glucosidase from Thermotoga maritima hydrolylzes cellobiose 6-phosphate (6P) into glucose-6P and glucose, in an NAD+ and Mn2+ dependent fashion. The Escherichia coli 6-phospho-beta-glucosidase (also called celF) hydrolyzes a variety of phospho-beta-glucosides including cellobiose-6P, salicin-6P, arbutin-6P, and gentobiose-6P. Phospho-beta-glucosidases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein
Probab=97.09 E-value=0.0029 Score=67.56 Aligned_cols=75 Identities=20% Similarity=0.239 Sum_probs=49.6
Q ss_pred ceEEEEcCCCCcH-HHHHHHHhC-----CCeEEEEeCC-hHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCC
Q 007805 309 RKVAVIGGGLMGS-GIATAHILN-----NIYVVLKEVN-SEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLD 381 (589)
Q Consensus 309 ~kI~IIG~G~mG~-~iA~~l~~~-----G~~V~~~d~~-~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~ 381 (589)
.||+|||+|..-+ .+...+++. +-+|+++|++ +++++....-.+. ..+....+ -.+..++|
T Consensus 1 ~KI~iIGaGS~~tp~li~~l~~~~~~l~~~ei~L~Did~~~rl~~v~~~~~~----~~~~~~~~--------~~v~~t~d 68 (419)
T cd05296 1 MKLTIIGGGSSYTPELIEGLIRRYEELPVTELVLVDIDEEEKLEIVGALAKR----MVKKAGLP--------IKVHLTTD 68 (419)
T ss_pred CEEEEECCchHhHHHHHHHHHhccccCCCCEEEEecCChHHHHHHHHHHHHH----HHHhhCCC--------eEEEEeCC
Confidence 4899999998633 445555542 3589999999 7887664332222 22221111 24677888
Q ss_pred c-cCCCCCCEEEEec
Q 007805 382 Y-SEFKDVDMVIEAV 395 (589)
Q Consensus 382 ~-~~~~~aDlVIeav 395 (589)
. +++++||+||.++
T Consensus 69 ~~~al~gadfVi~~~ 83 (419)
T cd05296 69 RREALEGADFVFTQI 83 (419)
T ss_pred HHHHhCCCCEEEEEE
Confidence 8 8899999999776
No 335
>COG1712 Predicted dinucleotide-utilizing enzyme [General function prediction only]
Probab=97.08 E-value=0.0022 Score=60.79 Aligned_cols=88 Identities=19% Similarity=0.208 Sum_probs=59.2
Q ss_pred eEEEEcCCCCcHHHHHHHHhC--CC-eEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cCC
Q 007805 310 KVAVIGGGLMGSGIATAHILN--NI-YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEF 385 (589)
Q Consensus 310 kI~IIG~G~mG~~iA~~l~~~--G~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~ 385 (589)
+|++||+|.+|..+...+... .+ -|.+||++.+++..+.+.. . ....+++ +.+
T Consensus 2 ~vgiVGcGaIG~~l~e~v~~~~~~~e~v~v~D~~~ek~~~~~~~~----------------------~-~~~~s~ide~~ 58 (255)
T COG1712 2 KVGIVGCGAIGKFLLELVRDGRVDFELVAVYDRDEEKAKELEASV----------------------G-RRCVSDIDELI 58 (255)
T ss_pred eEEEEeccHHHHHHHHHHhcCCcceeEEEEecCCHHHHHHHHhhc----------------------C-CCccccHHHHh
Confidence 799999999999999876643 24 4789999999877653311 1 1122555 456
Q ss_pred CCCCEEEEeccCChHHHHHHHHHHHHhCCCCcEEEecC
Q 007805 386 KDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNT 423 (589)
Q Consensus 386 ~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~t 423 (589)
++.|+|+||.. .+..+++..++.+. .-++||.|..
T Consensus 59 ~~~DlvVEaAS--~~Av~e~~~~~L~~-g~d~iV~SVG 93 (255)
T COG1712 59 AEVDLVVEAAS--PEAVREYVPKILKA-GIDVIVMSVG 93 (255)
T ss_pred hccceeeeeCC--HHHHHHHhHHHHhc-CCCEEEEech
Confidence 99999999996 55455555554432 3466666543
No 336
>PRK07340 ornithine cyclodeaminase; Validated
Probab=97.04 E-value=0.0017 Score=66.54 Aligned_cols=91 Identities=18% Similarity=0.168 Sum_probs=63.4
Q ss_pred ceEEEEcCCCCcHHHHHHHHh-CCC-eEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cCC
Q 007805 309 RKVAVIGGGLMGSGIATAHIL-NNI-YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEF 385 (589)
Q Consensus 309 ~kI~IIG~G~mG~~iA~~l~~-~G~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~ 385 (589)
++|+|||+|.+|...+..+.. .+. +|.+|++++++.+...++++. .+ + .+. .++. +++
T Consensus 126 ~~v~IiGaG~qa~~~~~al~~~~~~~~v~v~~r~~~~a~~~a~~~~~-------~~-~----------~~~-~~~~~~av 186 (304)
T PRK07340 126 GDLLLIGTGVQARAHLEAFAAGLPVRRVWVRGRTAASAAAFCAHARA-------LG-P----------TAE-PLDGEAIP 186 (304)
T ss_pred CEEEEECCcHHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHh-------cC-C----------eeE-ECCHHHHh
Confidence 679999999999999999875 564 799999999987775443321 01 0 111 2344 578
Q ss_pred CCCCEEEEeccCChHHHHHHHHHHHHhCCCCcEEEecCCC
Q 007805 386 KDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTST 425 (589)
Q Consensus 386 ~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~ 425 (589)
+++|+||.|+|..-.+ +.. .++|++.|....+.
T Consensus 187 ~~aDiVitaT~s~~Pl----~~~---~~~~g~hi~~iGs~ 219 (304)
T PRK07340 187 EAVDLVVTATTSRTPV----YPE---AARAGRLVVAVGAF 219 (304)
T ss_pred hcCCEEEEccCCCCce----eCc---cCCCCCEEEecCCC
Confidence 9999999999855433 322 35788877665554
No 337
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=97.04 E-value=0.0023 Score=59.36 Aligned_cols=76 Identities=22% Similarity=0.224 Sum_probs=55.7
Q ss_pred ceEEEEcCCCC-cHHHHHHHHhCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCccCCCC
Q 007805 309 RKVAVIGGGLM-GSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKD 387 (589)
Q Consensus 309 ~kI~IIG~G~m-G~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~ 387 (589)
++|.|||+|.| |..+|..|.+.|.+|++.+++.+.+. +.+++
T Consensus 45 k~vlViG~G~~~G~~~a~~L~~~g~~V~v~~r~~~~l~-------------------------------------~~l~~ 87 (168)
T cd01080 45 KKVVVVGRSNIVGKPLAALLLNRNATVTVCHSKTKNLK-------------------------------------EHTKQ 87 (168)
T ss_pred CEEEEECCcHHHHHHHHHHHhhCCCEEEEEECCchhHH-------------------------------------HHHhh
Confidence 78999999998 88899999999999999998853322 33678
Q ss_pred CCEEEEeccCChHHHHHHHHHHHHhCCCCcEEEecCCCCCH
Q 007805 388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDL 428 (589)
Q Consensus 388 aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~ 428 (589)
||+||.|++..--+..+ .++++.++++.+..-.+
T Consensus 88 aDiVIsat~~~~ii~~~-------~~~~~~viIDla~prdv 121 (168)
T cd01080 88 ADIVIVAVGKPGLVKGD-------MVKPGAVVIDVGINRVP 121 (168)
T ss_pred CCEEEEcCCCCceecHH-------HccCCeEEEEccCCCcc
Confidence 99999999743222222 34567777776655443
No 338
>TIGR02992 ectoine_eutC ectoine utilization protein EutC. Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. This family belongs to the ornithine cyclodeaminase/mu-crystallin family (pfam02423).
Probab=97.02 E-value=0.0017 Score=67.31 Aligned_cols=92 Identities=13% Similarity=0.163 Sum_probs=61.5
Q ss_pred ceEEEEcCCCCcHHHHHHHH-hCCC-eEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cCC
Q 007805 309 RKVAVIGGGLMGSGIATAHI-LNNI-YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEF 385 (589)
Q Consensus 309 ~kI~IIG~G~mG~~iA~~l~-~~G~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~ 385 (589)
++++|||+|.+|...+..++ ..+. +|++|+|++++.+...+++...+ | + .+...++. +++
T Consensus 130 ~~v~iiGaG~qA~~~~~al~~~~~i~~v~V~~R~~~~a~~~a~~~~~~~------g-~----------~v~~~~~~~~av 192 (326)
T TIGR02992 130 SVVAIFGAGMQARLQLEALTLVRDIRSARIWARDSAKAEALALQLSSLL------G-I----------DVTAATDPRAAM 192 (326)
T ss_pred cEEEEECCCHHHHHHHHHHHHhCCccEEEEECCCHHHHHHHHHHHHhhc------C-c----------eEEEeCCHHHHh
Confidence 67999999999999999987 4664 79999999998877654432111 1 0 12234455 568
Q ss_pred CCCCEEEEeccCChHHHHHHHHHHHHhCCCCcEEEecC
Q 007805 386 KDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNT 423 (589)
Q Consensus 386 ~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~t 423 (589)
++||+||.|+|....+ +. .+.+++++.+....
T Consensus 193 ~~aDiVvtaT~s~~p~----i~--~~~l~~g~~i~~vg 224 (326)
T TIGR02992 193 SGADIIVTTTPSETPI----LH--AEWLEPGQHVTAMG 224 (326)
T ss_pred ccCCEEEEecCCCCcE----ec--HHHcCCCcEEEeeC
Confidence 8999999999754322 21 12356777665433
No 339
>cd01336 MDH_cytoplasmic_cytosolic Cytoplasmic and cytosolic Malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are eukaryotic MDHs localized to the cytoplasm and cytosol. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=96.99 E-value=0.0015 Score=67.43 Aligned_cols=103 Identities=17% Similarity=0.139 Sum_probs=62.8
Q ss_pred ceEEEEcC-CCCcHHHHHHHHhCC-------CeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHH-HHhhccccc
Q 007805 309 RKVAVIGG-GLMGSGIATAHILNN-------IYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKAN-NALKMLKGV 379 (589)
Q Consensus 309 ~kI~IIG~-G~mG~~iA~~l~~~G-------~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~i~~~ 379 (589)
-||+|+|+ |.+|+.++..|+..+ .+|+++|+++.. +.+.. -.++-.+.. .....+...
T Consensus 3 ~kV~I~GAaG~VG~~la~~L~~~~~~~~~~~~el~L~D~~~~~-~~~~g------------~~~Dl~d~~~~~~~~~~~~ 69 (325)
T cd01336 3 IRVLVTGAAGQIAYSLLPMIAKGDVFGPDQPVILHLLDIPPAL-KALEG------------VVMELQDCAFPLLKSVVAT 69 (325)
T ss_pred eEEEEECCCCHHHHHHHHHHHhCcccCCCCCcEEEEEEcCCcc-ccccc------------eeeehhhccccccCCceec
Confidence 47999999 999999999998854 489999997531 11100 000100000 001233334
Q ss_pred CCc-cCCCCCCEEEEec--cC------------ChHHHHHHHHHHHHhCCCCcEEEecCC
Q 007805 380 LDY-SEFKDVDMVIEAV--IE------------SVPLKQKIFSELEKACPPHCILATNTS 424 (589)
Q Consensus 380 ~~~-~~~~~aDlVIeav--pe------------~~~~k~~v~~~l~~~~~~~~ii~s~ts 424 (589)
.++ +++++||+||.+. |. +..+.+++..++.++++++++++..|.
T Consensus 70 ~~~~~~l~~aDiVI~tAG~~~~~~~~R~~l~~~N~~i~~~i~~~i~~~~~~~~iiivvsN 129 (325)
T cd01336 70 TDPEEAFKDVDVAILVGAMPRKEGMERKDLLKANVKIFKEQGEALDKYAKKNVKVLVVGN 129 (325)
T ss_pred CCHHHHhCCCCEEEEeCCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEecC
Confidence 554 8899999999765 21 122335666678888777777665443
No 340
>TIGR01035 hemA glutamyl-tRNA reductase. This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA.
Probab=96.97 E-value=0.0012 Score=70.78 Aligned_cols=94 Identities=15% Similarity=0.144 Sum_probs=58.5
Q ss_pred ceEEEEcCCCCcHHHHHHHHhCC-CeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cCCC
Q 007805 309 RKVAVIGGGLMGSGIATAHILNN-IYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFK 386 (589)
Q Consensus 309 ~kI~IIG~G~mG~~iA~~l~~~G-~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~ 386 (589)
++|+|||+|.||..++..|...| .+|+++++++++.+...+.+ ....++ . .+. +.+.
T Consensus 181 ~~VlViGaG~iG~~~a~~L~~~G~~~V~v~~rs~~ra~~la~~~--------g~~~i~------------~-~~l~~~l~ 239 (417)
T TIGR01035 181 KKALLIGAGEMGELVAKHLLRKGVGKILIANRTYERAEDLAKEL--------GGEAVK------------F-EDLEEYLA 239 (417)
T ss_pred CEEEEECChHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHc--------CCeEee------------H-HHHHHHHh
Confidence 68999999999999999999999 68999999988765432211 000011 1 122 5567
Q ss_pred CCCEEEEeccCChH-HHHHHHHHHHHhCCCCcEEEecC
Q 007805 387 DVDMVIEAVIESVP-LKQKIFSELEKACPPHCILATNT 423 (589)
Q Consensus 387 ~aDlVIeavpe~~~-~k~~v~~~l~~~~~~~~ii~s~t 423 (589)
++|+||.|++.... +..+.++.....-+...++++.+
T Consensus 240 ~aDvVi~aT~s~~~ii~~e~l~~~~~~~~~~~~viDla 277 (417)
T TIGR01035 240 EADIVISSTGAPHPIVSKEDVERALRERTRPLFIIDIA 277 (417)
T ss_pred hCCEEEECCCCCCceEcHHHHHHHHhcCCCCeEEEEeC
Confidence 89999999864332 33344444322111234555554
No 341
>PRK00045 hemA glutamyl-tRNA reductase; Reviewed
Probab=96.95 E-value=0.0016 Score=69.98 Aligned_cols=94 Identities=18% Similarity=0.179 Sum_probs=60.1
Q ss_pred ceEEEEcCCCCcHHHHHHHHhCCC-eEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cCCC
Q 007805 309 RKVAVIGGGLMGSGIATAHILNNI-YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFK 386 (589)
Q Consensus 309 ~kI~IIG~G~mG~~iA~~l~~~G~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~ 386 (589)
++|+|||+|.||..++..+...|. +|+++++++++.+...+.+ |. + .+.. .+. +.+.
T Consensus 183 ~~vlViGaG~iG~~~a~~L~~~G~~~V~v~~r~~~ra~~la~~~----------g~-~---------~~~~-~~~~~~l~ 241 (423)
T PRK00045 183 KKVLVIGAGEMGELVAKHLAEKGVRKITVANRTLERAEELAEEF----------GG-E---------AIPL-DELPEALA 241 (423)
T ss_pred CEEEEECchHHHHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHHc----------CC-c---------EeeH-HHHHHHhc
Confidence 689999999999999999999997 8999999998765532211 10 0 0001 122 4567
Q ss_pred CCCEEEEeccCCh-HHHHHHHHHHHHhC-CCCcEEEecC
Q 007805 387 DVDMVIEAVIESV-PLKQKIFSELEKAC-PPHCILATNT 423 (589)
Q Consensus 387 ~aDlVIeavpe~~-~~k~~v~~~l~~~~-~~~~ii~s~t 423 (589)
++|+||.|++... -+..+.++.....- ..+.++++.+
T Consensus 242 ~aDvVI~aT~s~~~~i~~~~l~~~~~~~~~~~~vviDla 280 (423)
T PRK00045 242 EADIVISSTGAPHPIIGKGMVERALKARRHRPLLLVDLA 280 (423)
T ss_pred cCCEEEECCCCCCcEEcHHHHHHHHhhccCCCeEEEEeC
Confidence 8999999997533 23344444432211 2345666554
No 342
>TIGR01921 DAP-DH diaminopimelate dehydrogenase. This model represents the diaminopimelate dehydrogenase enzyme which provides an alternate (shortcut) route of lysine buiosynthesis in Corynebacterium, Bacterioides, Porphyromonas and scattered other species. The enzyme from Corynebacterium glutamicum has been crystallized and characterized.
Probab=96.93 E-value=0.0064 Score=62.15 Aligned_cols=66 Identities=21% Similarity=0.268 Sum_probs=45.4
Q ss_pred ceEEEEcCCCCcHHHHHHHHhC-CCeEE-EEeCCh-HHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cC
Q 007805 309 RKVAVIGGGLMGSGIATAHILN-NIYVV-LKEVNS-EYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SE 384 (589)
Q Consensus 309 ~kI~IIG~G~mG~~iA~~l~~~-G~~V~-~~d~~~-~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~ 384 (589)
-||+|||+|.||..++..+.++ +++++ ++|+++ +.+.. ..+ ...+.+. +.
T Consensus 4 IRVgIVG~GnIGr~~a~al~~~pd~ELVgV~dr~~~~~~~~-------------~~~-------------v~~~~d~~e~ 57 (324)
T TIGR01921 4 IRAAIVGYGNLGRSVEKAIQQQPDMELVGVFSRRGAETLDT-------------ETP-------------VYAVADDEKH 57 (324)
T ss_pred cEEEEEeecHHHHHHHHHHHhCCCcEEEEEEcCCcHHHHhh-------------cCC-------------ccccCCHHHh
Confidence 5899999999999999988776 78877 579985 32211 001 1112233 44
Q ss_pred CCCCCEEEEeccCChH
Q 007805 385 FKDVDMVIEAVIESVP 400 (589)
Q Consensus 385 ~~~aDlVIeavpe~~~ 400 (589)
+.++|+|++|.|....
T Consensus 58 l~~iDVViIctPs~th 73 (324)
T TIGR01921 58 LDDVDVLILCMGSATD 73 (324)
T ss_pred ccCCCEEEEcCCCccC
Confidence 5789999999986554
No 343
>PRK12549 shikimate 5-dehydrogenase; Reviewed
Probab=96.92 E-value=0.0015 Score=66.13 Aligned_cols=72 Identities=15% Similarity=0.192 Sum_probs=50.8
Q ss_pred ceEEEEcCCCCcHHHHHHHHhCCC-eEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cCCC
Q 007805 309 RKVAVIGGGLMGSGIATAHILNNI-YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFK 386 (589)
Q Consensus 309 ~kI~IIG~G~mG~~iA~~l~~~G~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~ 386 (589)
++|.|||+|-+|++++..|+..|. +|+++||++++.+...+.+.... .. ..+....+. +.++
T Consensus 128 k~vlIlGaGGaaraia~aL~~~G~~~I~I~nR~~~ka~~la~~l~~~~------~~----------~~~~~~~~~~~~~~ 191 (284)
T PRK12549 128 ERVVQLGAGGAGAAVAHALLTLGVERLTIFDVDPARAAALADELNARF------PA----------ARATAGSDLAAALA 191 (284)
T ss_pred CEEEEECCcHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHhhC------CC----------eEEEeccchHhhhC
Confidence 689999999999999999999998 79999999988776544332110 00 001111222 3567
Q ss_pred CCCEEEEecc
Q 007805 387 DVDMVIEAVI 396 (589)
Q Consensus 387 ~aDlVIeavp 396 (589)
++|+||.|+|
T Consensus 192 ~aDiVInaTp 201 (284)
T PRK12549 192 AADGLVHATP 201 (284)
T ss_pred CCCEEEECCc
Confidence 8899998887
No 344
>PRK07189 malonate decarboxylase subunit beta; Reviewed
Probab=96.92 E-value=0.082 Score=53.40 Aligned_cols=96 Identities=19% Similarity=0.299 Sum_probs=64.1
Q ss_pred CCCCCHHHHHHHHHHHHHHhcCC----CceEEEEEcCCCCCcCCCCchhhhhccCCCcccccchhHHHHHHHHHHhCCCc
Q 007805 25 VNALAIPIVAGLKDKFEEATSRD----DVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKP 100 (589)
Q Consensus 25 ~N~l~~~~~~~l~~~l~~~~~~~----~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kp 100 (589)
.-++.......+..+++.+.++. .+-+|.|.-.|+ +-+++-.. . ...+.+. +..+ ..+... .|
T Consensus 81 GGS~G~~~g~Ki~r~~e~A~~~~~~~~~~PvV~l~dSGG-----aRlqEg~~----~-L~~~a~i-~~~~-~~ls~~-VP 147 (301)
T PRK07189 81 GGSVGEVHGAKLAGALELAAEDNRNGIPTAVLLLFETGG-----VRLQEANA----G-LAAIAEI-MRAI-VDLRAA-VP 147 (301)
T ss_pred CcCcCHHHHHHHHHHHHHHHHhCCCCCCCCEEEEecCCC-----cCccchHH----H-HHHHHHH-HHHH-HHHhCC-CC
Confidence 47899999999999999887664 255666654333 23322100 0 0001111 1222 224444 99
Q ss_pred EEEEeCCc--ccchhhHHhhhcCEEEEeCCceEec
Q 007805 101 IVAAVEGL--ALGGGLELAMGCHARIAAPKTQLGL 133 (589)
Q Consensus 101 ~iaav~G~--a~GgG~~lala~D~~ia~~~a~~~~ 133 (589)
+|+++.|. |+||+...+.+||++|+++++++++
T Consensus 148 ~I~vv~G~~gc~GG~a~~a~l~D~iIm~~~a~igl 182 (301)
T PRK07189 148 VIGLIGGRVGCFGGMGIAAALCSYLIVSEEGRLGL 182 (301)
T ss_pred EEEEEcCCCCCcHHHHHHHhcCCEEEEECCcEEec
Confidence 99999999 9999999999999999999887775
No 345
>COG1030 NfeD Membrane-bound serine protease (ClpP class) [Posttranslational modification, protein turnover, chaperones]
Probab=96.91 E-value=0.017 Score=60.50 Aligned_cols=147 Identities=22% Similarity=0.275 Sum_probs=102.0
Q ss_pred cCcEEEEEeCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEE-cCCCCCcCCCCchhhhhccCCCcccccchhHHHHH
Q 007805 12 NDGVAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLT-GNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELV 90 (589)
Q Consensus 12 ~~~v~~i~l~~p~~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~-g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~ 90 (589)
+..|..+.++. .+++...+.+.+.++.++++.. -++||. -+++. +.+...+..
T Consensus 25 ~~~v~vi~i~g----~I~~~s~~~l~r~l~~A~~~~a-~~vvl~ldTPGG---------------------l~~sm~~iv 78 (436)
T COG1030 25 EKKVYVIEIDG----AIDPASADYLQRALQSAEEENA-AAVVLELDTPGG---------------------LLDSMRQIV 78 (436)
T ss_pred CCeEEEEEecC----ccCHHHHHHHHHHHHHHHhCCC-cEEEEEecCCCc---------------------hHHHHHHHH
Confidence 34577777754 5999999999999999997753 344442 22110 111223455
Q ss_pred HHHHHhCCCcEEEEe---CCcccchhhHHhhhcCEEEEeCCceEeccccccCC---CCChh-hhhh------HhhhcC--
Q 007805 91 VNLIEDCKKPIVAAV---EGLALGGGLELAMGCHARIAAPKTQLGLPELTLGV---IPGFG-GTQR------LPRLVG-- 155 (589)
Q Consensus 91 ~~~l~~~~kp~iaav---~G~a~GgG~~lala~D~~ia~~~a~~~~pe~~~Gl---~p~~g-~~~~------l~~~~G-- 155 (589)
+.+.+.+.|++..| .+.|..+|.-++++||+..+++.+.++-...-.+- .+... .... +.+.-|
T Consensus 79 -~~i~~s~vPV~~yv~p~ga~AaSAGtyI~m~~hiaaMAPgT~iGaa~Pi~~~g~~~~~~~~~n~~~ay~~~~A~~~gRN 157 (436)
T COG1030 79 -RAILNSPVPVIGYVVPDGARAASAGTYILMATHIAAMAPGTNIGAATPIAGGGTSAKEANTTNAAVAYIRSLAEERGRN 157 (436)
T ss_pred -HHHHcCCCCEEEEEcCCCcchhchhhHHHHhcChhhhCCCCcccccceecCCCCCccchhhHHHHHHHHHHHHHHcCCC
Confidence 77999999988888 34699999999999999999999998875553332 11111 1111 122222
Q ss_pred HHHHHHHHHcCCCCCHHHHHHcCCcceecC
Q 007805 156 LSKAIEMMLLSKSITSEEGWKLGLIDAVVT 185 (589)
Q Consensus 156 ~~~a~~l~ltg~~~~a~~A~~~Glv~~vv~ 185 (589)
...|.+++.....++++||++.|++|-+..
T Consensus 158 ~~~ae~~v~~~~~l~a~eA~~~~vid~iA~ 187 (436)
T COG1030 158 PTWAERFVTENLSLTAEEALRQGVIDLIAR 187 (436)
T ss_pred hHHHHHHhhhccCCChhHHHhcCccccccC
Confidence 356788999999999999999999998753
No 346
>PRK08291 ectoine utilization protein EutC; Validated
Probab=96.88 E-value=0.0027 Score=65.91 Aligned_cols=74 Identities=16% Similarity=0.127 Sum_probs=53.3
Q ss_pred ceEEEEcCCCCcHHHHHHHHh-CC-CeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cCC
Q 007805 309 RKVAVIGGGLMGSGIATAHIL-NN-IYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEF 385 (589)
Q Consensus 309 ~kI~IIG~G~mG~~iA~~l~~-~G-~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~ 385 (589)
++|+|||+|.+|...+..+.. .+ .+|.+|+|++++.+...+++++.+ | + .+...+++ +++
T Consensus 133 ~~v~IiGaG~~a~~~~~al~~~~~~~~V~v~~R~~~~a~~l~~~~~~~~------g-~----------~v~~~~d~~~al 195 (330)
T PRK08291 133 SRAAVIGAGEQARLQLEALTLVRPIREVRVWARDAAKAEAYAADLRAEL------G-I----------PVTVARDVHEAV 195 (330)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHhhcc------C-c----------eEEEeCCHHHHH
Confidence 679999999999999888875 45 489999999998887654433211 1 0 12334555 667
Q ss_pred CCCCEEEEeccCCh
Q 007805 386 KDVDMVIEAVIESV 399 (589)
Q Consensus 386 ~~aDlVIeavpe~~ 399 (589)
+++|+||.|+|...
T Consensus 196 ~~aDiVi~aT~s~~ 209 (330)
T PRK08291 196 AGADIIVTTTPSEE 209 (330)
T ss_pred ccCCEEEEeeCCCC
Confidence 88999999987543
No 347
>PRK13301 putative L-aspartate dehydrogenase; Provisional
Probab=96.86 E-value=0.004 Score=61.42 Aligned_cols=86 Identities=15% Similarity=0.078 Sum_probs=54.8
Q ss_pred ceEEEEcCCCCcHHHHHHHHhCC---Ce-EEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCccC
Q 007805 309 RKVAVIGGGLMGSGIATAHILNN---IY-VVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSE 384 (589)
Q Consensus 309 ~kI~IIG~G~mG~~iA~~l~~~G---~~-V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~ 384 (589)
+||+|||+|.||..++..+.+.+ ++ +.++++++++.+... +.....++++.
T Consensus 3 ~rvgiIG~GaIG~~va~~l~~~~~~~~~l~~V~~~~~~~~~~~~-------------------------~~~~~~~~l~~ 57 (267)
T PRK13301 3 HRIAFIGLGAIASDVAAGLLADAAQPCQLAALTRNAADLPPALA-------------------------GRVALLDGLPG 57 (267)
T ss_pred eEEEEECccHHHHHHHHHHhcCCCCceEEEEEecCCHHHHHHhh-------------------------ccCcccCCHHH
Confidence 68999999999999999987642 44 446788876544421 11234455643
Q ss_pred --CCCCCEEEEeccCChHHHHHHHHHHHHhCCCCcEEEec
Q 007805 385 --FKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATN 422 (589)
Q Consensus 385 --~~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ 422 (589)
....|+|+||.. .+..++.-..+... ..+.++.|.
T Consensus 58 ll~~~~DlVVE~A~--~~av~e~~~~iL~~-g~dlvv~Sv 94 (267)
T PRK13301 58 LLAWRPDLVVEAAG--QQAIAEHAEGCLTA-GLDMIICSA 94 (267)
T ss_pred HhhcCCCEEEECCC--HHHHHHHHHHHHhc-CCCEEEECh
Confidence 478999999997 55555555544432 234444443
No 348
>TIGR00507 aroE shikimate 5-dehydrogenase. This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain.
Probab=96.85 E-value=0.0025 Score=64.28 Aligned_cols=41 Identities=15% Similarity=0.199 Sum_probs=36.5
Q ss_pred ceEEEEcCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHH
Q 007805 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIK 349 (589)
Q Consensus 309 ~kI~IIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~ 349 (589)
++|.|+|+|.+|.+++..++..|++|+++++++++.+...+
T Consensus 118 k~vliiGaGg~g~aia~~L~~~g~~v~v~~R~~~~~~~la~ 158 (270)
T TIGR00507 118 QRVLIIGAGGAARAVALPLLKADCNVIIANRTVSKAEELAE 158 (270)
T ss_pred CEEEEEcCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence 67999999999999999999999999999999887766433
No 349
>PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C ....
Probab=96.83 E-value=0.0015 Score=57.23 Aligned_cols=99 Identities=18% Similarity=0.164 Sum_probs=59.9
Q ss_pred eEEEEc-CCCCcHHHHHHHHhCC-Ce-EEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccC-CccCC
Q 007805 310 KVAVIG-GGLMGSGIATAHILNN-IY-VVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVL-DYSEF 385 (589)
Q Consensus 310 kI~IIG-~G~mG~~iA~~l~~~G-~~-V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~-~~~~~ 385 (589)
||+||| .|.+|..+...|.++- ++ +.++.++.+.-..... ... ...+ ...+...+ +.+.+
T Consensus 1 rV~IvGAtG~vG~~l~~lL~~hp~~e~~~~~~~~~~~g~~~~~----~~~--~~~~----------~~~~~~~~~~~~~~ 64 (121)
T PF01118_consen 1 RVAIVGATGYVGRELLRLLAEHPDFELVALVSSSRSAGKPLSE----VFP--HPKG----------FEDLSVEDADPEEL 64 (121)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTSTEEEEEEEESTTTTTSBHHH----TTG--GGTT----------TEEEBEEETSGHHH
T ss_pred CEEEECCCCHHHHHHHHHHhcCCCccEEEeeeeccccCCeeeh----hcc--cccc----------ccceeEeecchhHh
Confidence 799999 8999999999999863 35 4456666522111100 000 0000 01222222 34667
Q ss_pred CCCCEEEEeccCChHHHHHHHHHHHHhCCCCcEEEecCCCCCHH
Q 007805 386 KDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLN 429 (589)
Q Consensus 386 ~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~ 429 (589)
+++|+||.|+| .....++..++ ++.++.|+++++.+...
T Consensus 65 ~~~Dvvf~a~~--~~~~~~~~~~~---~~~g~~ViD~s~~~R~~ 103 (121)
T PF01118_consen 65 SDVDVVFLALP--HGASKELAPKL---LKAGIKVIDLSGDFRLD 103 (121)
T ss_dssp TTESEEEE-SC--HHHHHHHHHHH---HHTTSEEEESSSTTTTS
T ss_pred hcCCEEEecCc--hhHHHHHHHHH---hhCCcEEEeCCHHHhCC
Confidence 99999999998 44455655554 45778888998876554
No 350
>COG2423 Predicted ornithine cyclodeaminase, mu-crystallin homolog [Amino acid transport and metabolism]
Probab=96.77 E-value=0.004 Score=63.87 Aligned_cols=94 Identities=12% Similarity=0.076 Sum_probs=66.0
Q ss_pred cceEEEEcCCCCcHHHHHHHHhC-C-CeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cC
Q 007805 308 VRKVAVIGGGLMGSGIATAHILN-N-IYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SE 384 (589)
Q Consensus 308 ~~kI~IIG~G~mG~~iA~~l~~~-G-~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~ 384 (589)
.+.++|||+|.++......+..- + -+|.+|+++++..++...++++.+ . ..+...++. ++
T Consensus 130 a~~laiIGaG~qA~~ql~a~~~v~~~~~I~i~~r~~~~~e~~a~~l~~~~-------~----------~~v~a~~s~~~a 192 (330)
T COG2423 130 ASTLAIIGAGAQARTQLEALKAVRDIREIRVYSRDPEAAEAFAARLRKRG-------G----------EAVGAADSAEEA 192 (330)
T ss_pred CcEEEEECCcHHHHHHHHHHHhhCCccEEEEEcCCHHHHHHHHHHHHhhc-------C----------ccceeccCHHHH
Confidence 46799999999999999888753 3 389999999999888655443221 1 124455665 78
Q ss_pred CCCCCEEEEeccCChHHHHHHHHHHHHhCCCCcEEEecCC
Q 007805 385 FKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTS 424 (589)
Q Consensus 385 ~~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts 424 (589)
+++||+|+.|+|.+..+.. .+.+++++.|....+
T Consensus 193 v~~aDiIvt~T~s~~Pil~------~~~l~~G~hI~aiGa 226 (330)
T COG2423 193 VEGADIVVTATPSTEPVLK------AEWLKPGTHINAIGA 226 (330)
T ss_pred hhcCCEEEEecCCCCCeec------HhhcCCCcEEEecCC
Confidence 9999999999986553211 134667877765444
No 351
>PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=96.76 E-value=0.0033 Score=63.16 Aligned_cols=73 Identities=19% Similarity=0.302 Sum_probs=55.2
Q ss_pred ceEEEEcCCC-CcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCccCCCC
Q 007805 309 RKVAVIGGGL-MGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKD 387 (589)
Q Consensus 309 ~kI~IIG~G~-mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~ 387 (589)
++|.|||.|. +|.++|..|...|..|++++.....+. +.+++
T Consensus 159 k~vvVIGrs~~VG~pla~lL~~~gatVtv~~s~t~~l~-------------------------------------~~~~~ 201 (286)
T PRK14175 159 KNAVVIGRSHIVGQPVSKLLLQKNASVTILHSRSKDMA-------------------------------------SYLKD 201 (286)
T ss_pred CEEEEECCCchhHHHHHHHHHHCCCeEEEEeCCchhHH-------------------------------------HHHhh
Confidence 6899999987 999999999999999999987543221 33678
Q ss_pred CCEEEEeccCChHHHHHHHHHHHHhCCCCcEEEecCCC
Q 007805 388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTST 425 (589)
Q Consensus 388 aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~ 425 (589)
||+||.|++-. .++.. +.+++++++++..+.
T Consensus 202 ADIVIsAvg~p-----~~i~~--~~vk~gavVIDvGi~ 232 (286)
T PRK14175 202 ADVIVSAVGKP-----GLVTK--DVVKEGAVIIDVGNT 232 (286)
T ss_pred CCEEEECCCCC-----cccCH--HHcCCCcEEEEcCCC
Confidence 99999999732 22222 357888988876653
No 352
>PRK06046 alanine dehydrogenase; Validated
Probab=96.76 E-value=0.0038 Score=64.72 Aligned_cols=93 Identities=13% Similarity=0.097 Sum_probs=61.9
Q ss_pred ceEEEEcCCCCcHHHHHHHHhC-CC-eEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cCC
Q 007805 309 RKVAVIGGGLMGSGIATAHILN-NI-YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEF 385 (589)
Q Consensus 309 ~kI~IIG~G~mG~~iA~~l~~~-G~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~ 385 (589)
++|+|||+|.+|...+..+... +. .|.+||+++++.+...+++.+.+ + -.+...++. +.+
T Consensus 130 ~~vgiiG~G~qa~~h~~al~~~~~i~~v~v~~r~~~~~~~~~~~~~~~~------~-----------~~v~~~~~~~~~l 192 (326)
T PRK06046 130 KVVGIIGAGNQARTQLLALSEVFDLEEVRVYDRTKSSAEKFVERMSSVV------G-----------CDVTVAEDIEEAC 192 (326)
T ss_pred CEEEEECCcHHHHHHHHHHHhhCCceEEEEECCCHHHHHHHHHHHHhhc------C-----------ceEEEeCCHHHHh
Confidence 6899999999999999888743 44 78899999998887655432110 1 012334455 445
Q ss_pred CCCCEEEEeccCChHHHHHHHHHHHHhCCCCcEEEecCCC
Q 007805 386 KDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTST 425 (589)
Q Consensus 386 ~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~ 425 (589)
+ +|+|+.|+|..-.+ +. .+.+++++.|.+..|.
T Consensus 193 ~-aDiVv~aTps~~P~----~~--~~~l~~g~hV~~iGs~ 225 (326)
T PRK06046 193 D-CDILVTTTPSRKPV----VK--AEWIKEGTHINAIGAD 225 (326)
T ss_pred h-CCEEEEecCCCCcE----ec--HHHcCCCCEEEecCCC
Confidence 5 99999999854322 21 1246788877665553
No 353
>COG2910 Putative NADH-flavin reductase [General function prediction only]
Probab=96.76 E-value=0.0035 Score=57.71 Aligned_cols=38 Identities=29% Similarity=0.291 Sum_probs=35.1
Q ss_pred ceEEEEcC-CCCcHHHHHHHHhCCCeEEEEeCChHHHHH
Q 007805 309 RKVAVIGG-GLMGSGIATAHILNNIYVVLKEVNSEYLLK 346 (589)
Q Consensus 309 ~kI~IIG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~ 346 (589)
+||+|||+ |..|+.|+.-..++||+|+.+-||++++..
T Consensus 1 mKIaiIgAsG~~Gs~i~~EA~~RGHeVTAivRn~~K~~~ 39 (211)
T COG2910 1 MKIAIIGASGKAGSRILKEALKRGHEVTAIVRNASKLAA 39 (211)
T ss_pred CeEEEEecCchhHHHHHHHHHhCCCeeEEEEeChHhccc
Confidence 58999997 999999999999999999999999998754
No 354
>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]. In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....
Probab=96.75 E-value=0.0067 Score=53.36 Aligned_cols=102 Identities=19% Similarity=0.155 Sum_probs=59.4
Q ss_pred ceEEEEcC-CCCcHHHHHHHHh-CCCeEE-EEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cC
Q 007805 309 RKVAVIGG-GLMGSGIATAHIL-NNIYVV-LKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SE 384 (589)
Q Consensus 309 ~kI~IIG~-G~mG~~iA~~l~~-~G~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~ 384 (589)
.||+|+|+ |.||+.|+..+.+ .++++. .+|++++.... +.+. .....+ ...+..++++ +.
T Consensus 1 mrV~i~G~~GrMG~~i~~~i~~~~~~~lv~~v~~~~~~~~g--~d~g----~~~~~~----------~~~~~v~~~l~~~ 64 (124)
T PF01113_consen 1 MRVGIVGASGRMGRAIAEAILESPGFELVGAVDRKPSAKVG--KDVG----ELAGIG----------PLGVPVTDDLEEL 64 (124)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHSTTEEEEEEEETTTSTTTT--SBCH----HHCTSS----------T-SSBEBS-HHHH
T ss_pred CEEEEECCCCHHHHHHHHHHHhcCCcEEEEEEecCCccccc--chhh----hhhCcC----------CcccccchhHHHh
Confidence 37999999 9999999999998 688854 67887621110 0000 000000 0124445666 55
Q ss_pred CCCCCEEEEeccCChHHHHHHHHHHHHhCCCCcEEEecCCCCCHHHH
Q 007805 385 FKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIV 431 (589)
Q Consensus 385 ~~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~~~ 431 (589)
++.+|+||+... ++...+.++...+ .+..+++.|+++.-+++
T Consensus 65 ~~~~DVvIDfT~--p~~~~~~~~~~~~---~g~~~ViGTTG~~~~~~ 106 (124)
T PF01113_consen 65 LEEADVVIDFTN--PDAVYDNLEYALK---HGVPLVIGTTGFSDEQI 106 (124)
T ss_dssp TTH-SEEEEES---HHHHHHHHHHHHH---HT-EEEEE-SSSHHHHH
T ss_pred cccCCEEEEcCC--hHHhHHHHHHHHh---CCCCEEEECCCCCHHHH
Confidence 677999999883 5544455454444 36667788888875544
No 355
>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase. Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo
Probab=96.75 E-value=0.0034 Score=59.89 Aligned_cols=41 Identities=27% Similarity=0.303 Sum_probs=36.2
Q ss_pred ceEEEEcC-CCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHH
Q 007805 309 RKVAVIGG-GLMGSGIATAHILNNIYVVLKEVNSEYLLKGIK 349 (589)
Q Consensus 309 ~kI~IIG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~ 349 (589)
++|.|+|+ |.+|..++..|++.|++|++++|+.++++...+
T Consensus 29 ~~vlVlGgtG~iG~~~a~~l~~~g~~V~l~~R~~~~~~~l~~ 70 (194)
T cd01078 29 KTAVVLGGTGPVGQRAAVLLAREGARVVLVGRDLERAQKAAD 70 (194)
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHH
Confidence 67999996 999999999999999999999999887766543
No 356
>PRK06407 ornithine cyclodeaminase; Provisional
Probab=96.75 E-value=0.0039 Score=63.69 Aligned_cols=95 Identities=15% Similarity=0.161 Sum_probs=65.0
Q ss_pred cceEEEEcCCCCcHHHHHHHHhC-CC-eEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cC
Q 007805 308 VRKVAVIGGGLMGSGIATAHILN-NI-YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SE 384 (589)
Q Consensus 308 ~~kI~IIG~G~mG~~iA~~l~~~-G~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~ 384 (589)
.++++|||+|.+|...+..+..- .+ +|.+|++++++.+...++++..+ | -.+...++. ++
T Consensus 117 a~~l~iiGaG~QA~~~~~a~~~v~~i~~v~v~~r~~~~a~~f~~~~~~~~------~-----------~~v~~~~~~~ea 179 (301)
T PRK06407 117 VENFTIIGSGFQAETQLEGMASVYNPKRIRVYSRNFDHARAFAERFSKEF------G-----------VDIRPVDNAEAA 179 (301)
T ss_pred CcEEEEECCcHHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHHHHHHHhc------C-----------CcEEEeCCHHHH
Confidence 36799999999999988877753 33 89999999999887655443211 1 123445555 77
Q ss_pred CCCCCEEEEeccCChHHHHHHHHHHHHhCCCCcEEEecCCC
Q 007805 385 FKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTST 425 (589)
Q Consensus 385 ~~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~ 425 (589)
+++||+|+.|++..-.+ +. .+.++|++.|....|.
T Consensus 180 v~~aDIV~taT~s~~P~----~~--~~~l~pg~hV~aiGs~ 214 (301)
T PRK06407 180 LRDADTITSITNSDTPI----FN--RKYLGDEYHVNLAGSN 214 (301)
T ss_pred HhcCCEEEEecCCCCcE----ec--HHHcCCCceEEecCCC
Confidence 89999999999754432 21 1246678777655543
No 357
>TIGR01117 mmdA methylmalonyl-CoA decarboxylase alpha subunit. This model describes methymalonyl-CoA decarboxylase aplha subunit in archaea and bacteria. Metylmalonyl-CoA decarboxylase Na+ pump is a representative of a class of Na+ transport decarboxylases that couples the energy derived by decarboxylation of carboxylic acid substrates to drive the extrusion of Na+ ion across the membrane.
Probab=96.73 E-value=0.051 Score=59.58 Aligned_cols=165 Identities=12% Similarity=0.119 Sum_probs=103.4
Q ss_pred EEeCCCC--CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCCcCCCCchhhhhccCCCcccccchhHHHHHHHHHH
Q 007805 18 ITLINPP--VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIE 95 (589)
Q Consensus 18 i~l~~p~--~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 95 (589)
|.=|+|. .-++++...+...++++.+++. .+-+|.|.-.++ |..|.+-.. ....+...+++ .++.
T Consensus 319 vvAnd~~~~~G~~~~~~~~K~~r~i~~a~~~-~lPlV~lvDs~G-~~~g~~~E~----------~g~~~~~a~~~-~a~~ 385 (512)
T TIGR01117 319 IIANQPKVMAGCLDIDSSDKIARFIRFCDAF-NIPIVTFVDVPG-FLPGVNQEY----------GGIIRHGAKVL-YAYS 385 (512)
T ss_pred EEEeccccccCCCCHHHHHHHHHHHHHHHHc-CCCEEEEEeCcC-ccccHHHHH----------HHHHHHHHHHH-HHHH
Confidence 3445664 3679999999999999988764 456666654433 555544221 01112222444 5678
Q ss_pred hCCCcEEEEeCCcccchhhHHhh----hcCEEEEeCCceEeccccccCCCCChhhhhhHh-hhcC----HHHHHHHH---
Q 007805 96 DCKKPIVAAVEGLALGGGLELAM----GCHARIAAPKTQLGLPELTLGVIPGFGGTQRLP-RLVG----LSKAIEMM--- 163 (589)
Q Consensus 96 ~~~kp~iaav~G~a~GgG~~lal----a~D~~ia~~~a~~~~pe~~~Gl~p~~g~~~~l~-~~~G----~~~a~~l~--- 163 (589)
....|.|+.|-|.|+|||..-+. .+|+++|.++++++ ++++-++...+- +.+- ...+....
T Consensus 386 ~~~vP~isvi~g~~~Gga~~am~~~~~~~d~~~a~p~a~~~-------v~~pe~a~~i~~~~~l~~~~~~~~~~~~~~~~ 458 (512)
T TIGR01117 386 EATVPKVTIITRKAYGGAYLAMCSKHLGADQVYAWPTAEIA-------VMGPAGAANIIFRKDIKEAKDPAATRKQKIAE 458 (512)
T ss_pred hCCCCEEEEEcCCCchHHHHHhccccCCCCEEEEcCCCeEe-------ecCHHHHHHHHhhhhcccccCHHHHHHHHHHH
Confidence 89999999999999888654433 28999888887665 443333333222 2111 11111111
Q ss_pred HcCCCCCHHHHHHcCCcceecCchHHHHHHHHHHHHHHh
Q 007805 164 LLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAA 202 (589)
Q Consensus 164 ltg~~~~a~~A~~~Glv~~vv~~~~l~~~a~~~a~~la~ 202 (589)
..-+..++..+.+.|+||.|+++.+......++.+.+..
T Consensus 459 ~~~~~~~~~~~a~~g~vD~VI~P~~tR~~l~~~l~~~~~ 497 (512)
T TIGR01117 459 YREEFANPYKAAARGYVDDVIEPKQTRPKIVNALAMLES 497 (512)
T ss_pred HHHhhcCHHHHHhcCCCCeeEChHHHHHHHHHHHHHHhc
Confidence 122345888999999999999999988777776665443
No 358
>PLN00203 glutamyl-tRNA reductase
Probab=96.73 E-value=0.0032 Score=68.88 Aligned_cols=85 Identities=15% Similarity=0.175 Sum_probs=57.4
Q ss_pred cceEEEEcCCCCcHHHHHHHHhCCC-eEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cCC
Q 007805 308 VRKVAVIGGGLMGSGIATAHILNNI-YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEF 385 (589)
Q Consensus 308 ~~kI~IIG~G~mG~~iA~~l~~~G~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~ 385 (589)
-++|+|||+|.||..++..|...|. +|+++++++++.+...+.+. + .. -.....++. +.+
T Consensus 266 ~kkVlVIGAG~mG~~~a~~L~~~G~~~V~V~nRs~era~~La~~~~---------g-~~--------i~~~~~~dl~~al 327 (519)
T PLN00203 266 SARVLVIGAGKMGKLLVKHLVSKGCTKMVVVNRSEERVAALREEFP---------D-VE--------IIYKPLDEMLACA 327 (519)
T ss_pred CCEEEEEeCHHHHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhC---------C-Cc--------eEeecHhhHHHHH
Confidence 3689999999999999999999997 79999999988766432110 1 00 001111233 567
Q ss_pred CCCCEEEEeccC-ChHHHHHHHHHHH
Q 007805 386 KDVDMVIEAVIE-SVPLKQKIFSELE 410 (589)
Q Consensus 386 ~~aDlVIeavpe-~~~~k~~v~~~l~ 410 (589)
.++|+||.|++. .+-+..+.++++.
T Consensus 328 ~~aDVVIsAT~s~~pvI~~e~l~~~~ 353 (519)
T PLN00203 328 AEADVVFTSTSSETPLFLKEHVEALP 353 (519)
T ss_pred hcCCEEEEccCCCCCeeCHHHHHHhh
Confidence 899999999854 2334555655554
No 359
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=96.73 E-value=0.0099 Score=51.65 Aligned_cols=77 Identities=23% Similarity=0.209 Sum_probs=52.8
Q ss_pred eEEEEcCCCCcHHHHHHHHhC--CCeEE-EEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cCC
Q 007805 310 KVAVIGGGLMGSGIATAHILN--NIYVV-LKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEF 385 (589)
Q Consensus 310 kI~IIG~G~mG~~iA~~l~~~--G~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~ 385 (589)
||+|||+|.+|......+... +++|+ ++|+++++.+...+. -.+...+|+ +.+
T Consensus 2 ~v~iiG~G~~g~~~~~~~~~~~~~~~v~~v~d~~~~~~~~~~~~-----------------------~~~~~~~~~~~ll 58 (120)
T PF01408_consen 2 RVGIIGAGSIGRRHLRALLRSSPDFEVVAVCDPDPERAEAFAEK-----------------------YGIPVYTDLEELL 58 (120)
T ss_dssp EEEEESTSHHHHHHHHHHHHTTTTEEEEEEECSSHHHHHHHHHH-----------------------TTSEEESSHHHHH
T ss_pred EEEEECCcHHHHHHHHHHHhcCCCcEEEEEEeCCHHHHHHHHHH-----------------------hcccchhHHHHHH
Confidence 799999999999999888876 45654 889999887764221 123345555 344
Q ss_pred C--CCCEEEEeccCChHHHHHHHHHHHH
Q 007805 386 K--DVDMVIEAVIESVPLKQKIFSELEK 411 (589)
Q Consensus 386 ~--~aDlVIeavpe~~~~k~~v~~~l~~ 411 (589)
+ +.|+|++|+|... -.++..+..+
T Consensus 59 ~~~~~D~V~I~tp~~~--h~~~~~~~l~ 84 (120)
T PF01408_consen 59 ADEDVDAVIIATPPSS--HAEIAKKALE 84 (120)
T ss_dssp HHTTESEEEEESSGGG--HHHHHHHHHH
T ss_pred HhhcCCEEEEecCCcc--hHHHHHHHHH
Confidence 3 7899999998544 3355444433
No 360
>COG4091 Predicted homoserine dehydrogenase [Amino acid transport and metabolism]
Probab=96.72 E-value=0.039 Score=55.77 Aligned_cols=157 Identities=15% Similarity=0.116 Sum_probs=85.8
Q ss_pred ceEEEEcCCCCcHHHHHHHHh-CCCeEE-EEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCccCC-
Q 007805 309 RKVAVIGGGLMGSGIATAHIL-NNIYVV-LKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEF- 385 (589)
Q Consensus 309 ~kI~IIG~G~mG~~iA~~l~~-~G~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~- 385 (589)
-|||+||+|.||+.|+..... .|++|. +-|++.+...++..+....-...++....+.-..+-..+.+..++|.+.+
T Consensus 18 iRVGlIGAG~mG~~ivtQi~~m~Gm~vvaisd~~~~~ak~A~~~ag~~~~~~~e~~~~s~~a~Ai~aGKi~vT~D~~~i~ 97 (438)
T COG4091 18 IRVGLIGAGEMGTGIVTQIASMPGMEVVAISDRNLDAAKRAYDRAGGPKIEAVEADDASKMADAIEAGKIAVTDDAELII 97 (438)
T ss_pred eEEEEecccccchHHHHHHhhcCCceEEEEecccchHHHHHHHHhcCCcccccccchhhHHHHHHhcCcEEEecchhhhh
Confidence 579999999999999988775 599876 55888887777644321111011111111111111112455666666443
Q ss_pred --CCCCEEEEeccCChHHHHHHHHHHHHhCCCCcEEEecCC-----CCCHHHHhcccCCCCcEEEecCCCCCCCCCeeeE
Q 007805 386 --KDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTS-----TIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEI 458 (589)
Q Consensus 386 --~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts-----~~~~~~~~~~~~~~~r~ig~h~~~p~~~~~lvei 458 (589)
...|+||+++--...--+-.+ .......-++.-|.- +..+...+... | +..
T Consensus 98 ~~~~IdvIIdATG~p~vGA~~~l---~Ai~h~KHlVMmNVEaDvtIGp~Lk~~Ad~~-------G------------viy 155 (438)
T COG4091 98 ANDLIDVIIDATGVPEVGAKIAL---EAILHGKHLVMMNVEADVTIGPILKQQADAA-------G------------VIY 155 (438)
T ss_pred cCCcceEEEEcCCCcchhhHhHH---HHHhcCCeEEEEEeeeceeecHHHHHHHhhc-------C------------eEE
Confidence 456899998731111111222 223334445544432 22222222211 1 123
Q ss_pred ecCCCCCHHHHHHHHHHHHHcCCeeEEEc
Q 007805 459 VRTERTSAQVILDLMTVGKIIKKVPVVVG 487 (589)
Q Consensus 459 v~~~~t~~e~~~~~~~l~~~lG~~~v~v~ 487 (589)
..+....|..+-.+.+|.+++|..++.++
T Consensus 156 S~~~GDeP~~~mEL~efa~a~G~evv~aG 184 (438)
T COG4091 156 SGGAGDEPSSCMELYEFASALGFEVVSAG 184 (438)
T ss_pred eccCCCCcHHHHHHHHHHHhcCCeEEecc
Confidence 33445567778888899999999999985
No 361
>PRK05086 malate dehydrogenase; Provisional
Probab=96.69 E-value=0.0047 Score=63.49 Aligned_cols=95 Identities=18% Similarity=0.250 Sum_probs=57.3
Q ss_pred ceEEEEcC-CCCcHHHHHHHHh---CCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccc--cCC-
Q 007805 309 RKVAVIGG-GLMGSGIATAHIL---NNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKG--VLD- 381 (589)
Q Consensus 309 ~kI~IIG~-G~mG~~iA~~l~~---~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~--~~~- 381 (589)
+||+|||+ |.+|.++|..+.. .+++++++|+++.....+.. +.... ....+.. .++
T Consensus 1 ~KI~IIGAsG~VG~aia~~l~~~~~~~~el~L~d~~~~~~g~alD---------l~~~~--------~~~~i~~~~~~d~ 63 (312)
T PRK05086 1 MKVAVLGAAGGIGQALALLLKTQLPAGSELSLYDIAPVTPGVAVD---------LSHIP--------TAVKIKGFSGEDP 63 (312)
T ss_pred CEEEEECCCCHHHHHHHHHHHcCCCCccEEEEEecCCCCcceehh---------hhcCC--------CCceEEEeCCCCH
Confidence 58999999 9999999998855 24689999998542100000 00000 0011222 345
Q ss_pred ccCCCCCCEEEEeccC--Ch------------HHHHHHHHHHHHhCCCCcEEEe
Q 007805 382 YSEFKDVDMVIEAVIE--SV------------PLKQKIFSELEKACPPHCILAT 421 (589)
Q Consensus 382 ~~~~~~aDlVIeavpe--~~------------~~k~~v~~~l~~~~~~~~ii~s 421 (589)
.++++++|+||.|.-. ++ .+.+++.+.+.++. ++++++.
T Consensus 64 ~~~l~~~DiVIitaG~~~~~~~~R~dll~~N~~i~~~ii~~i~~~~-~~~iviv 116 (312)
T PRK05086 64 TPALEGADVVLISAGVARKPGMDRSDLFNVNAGIVKNLVEKVAKTC-PKACIGI 116 (312)
T ss_pred HHHcCCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCeEEEE
Confidence 3788999999998843 21 24445556667664 5555543
No 362
>PRK00048 dihydrodipicolinate reductase; Provisional
Probab=96.66 E-value=0.0039 Score=62.32 Aligned_cols=94 Identities=18% Similarity=0.103 Sum_probs=58.0
Q ss_pred ceEEEEcC-CCCcHHHHHHHHhC-CCeEE-EEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cC
Q 007805 309 RKVAVIGG-GLMGSGIATAHILN-NIYVV-LKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SE 384 (589)
Q Consensus 309 ~kI~IIG~-G~mG~~iA~~l~~~-G~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~ 384 (589)
.||+|+|+ |.||..++..+.+. +++++ ++|++++..... .. ..+...+++ +.
T Consensus 2 mkV~IiG~~G~mG~~i~~~l~~~~~~elvav~d~~~~~~~~~------------~~------------~~i~~~~dl~~l 57 (257)
T PRK00048 2 IKVAVAGASGRMGRELIEAVEAAEDLELVAAVDRPGSPLVGQ------------GA------------LGVAITDDLEAV 57 (257)
T ss_pred cEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCcccccc------------CC------------CCccccCCHHHh
Confidence 58999998 99999999888764 67765 588887653321 00 012234555 44
Q ss_pred CCCCCEEEEeccCChHHHHHHHHHHHHhCCCCcEEEecCCCCCHHHH
Q 007805 385 FKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIV 431 (589)
Q Consensus 385 ~~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~~~ 431 (589)
++++|+||++.| ++.-.++.... +..+.-++..|++.+.++.
T Consensus 58 l~~~DvVid~t~--p~~~~~~~~~a---l~~G~~vvigttG~s~~~~ 99 (257)
T PRK00048 58 LADADVLIDFTT--PEATLENLEFA---LEHGKPLVIGTTGFTEEQL 99 (257)
T ss_pred ccCCCEEEECCC--HHHHHHHHHHH---HHcCCCEEEECCCCCHHHH
Confidence 568999999987 33333443333 3334434444666665544
No 363
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=96.65 E-value=0.0042 Score=65.48 Aligned_cols=98 Identities=17% Similarity=0.235 Sum_probs=60.7
Q ss_pred cceEEEEcCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cCCC
Q 007805 308 VRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFK 386 (589)
Q Consensus 308 ~~kI~IIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~ 386 (589)
-.+|.|||+|.+|...+..+...|.+|+++|+++++++.+...... .+.....+. .++ +.++
T Consensus 167 ~~~VlViGaG~vG~~aa~~a~~lGa~V~v~d~~~~~~~~l~~~~g~----~v~~~~~~~-------------~~l~~~l~ 229 (370)
T TIGR00518 167 PGDVTIIGGGVVGTNAAKMANGLGATVTILDINIDRLRQLDAEFGG----RIHTRYSNA-------------YEIEDAVK 229 (370)
T ss_pred CceEEEEcCCHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHhcCc----eeEeccCCH-------------HHHHHHHc
Confidence 3679999999999999999999999999999999876654221100 000000000 112 4567
Q ss_pred CCCEEEEecc--CChHHHHHHHHHHHHhCCCCcEEEecC
Q 007805 387 DVDMVIEAVI--ESVPLKQKIFSELEKACPPHCILATNT 423 (589)
Q Consensus 387 ~aDlVIeavp--e~~~~k~~v~~~l~~~~~~~~ii~s~t 423 (589)
++|+||.|++ .... ..-+.++....++++.+|++.+
T Consensus 230 ~aDvVI~a~~~~g~~~-p~lit~~~l~~mk~g~vIvDva 267 (370)
T TIGR00518 230 RADLLIGAVLIPGAKA-PKLVSNSLVAQMKPGAVIVDVA 267 (370)
T ss_pred cCCEEEEccccCCCCC-CcCcCHHHHhcCCCCCEEEEEe
Confidence 8999999973 2110 0011233334567888776543
No 364
>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed
Probab=96.65 E-value=0.0044 Score=62.76 Aligned_cols=72 Identities=17% Similarity=0.216 Sum_probs=51.7
Q ss_pred ceEEEEcCCCCcHHHHHHHHhCC-CeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cCCC
Q 007805 309 RKVAVIGGGLMGSGIATAHILNN-IYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFK 386 (589)
Q Consensus 309 ~kI~IIG~G~mG~~iA~~l~~~G-~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~ 386 (589)
++|.|+|+|-+|.+++..|+..| .+|++++|+.++.+...+.+.. .+ .+....+. +.+.
T Consensus 124 k~vlVlGaGg~a~ai~~aL~~~g~~~V~v~~R~~~~a~~l~~~~~~-------~~------------~~~~~~~~~~~~~ 184 (278)
T PRK00258 124 KRILILGAGGAARAVILPLLDLGVAEITIVNRTVERAEELAKLFGA-------LG------------KAELDLELQEELA 184 (278)
T ss_pred CEEEEEcCcHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhhh-------cc------------ceeecccchhccc
Confidence 67999999999999999999999 6999999999887665433210 00 01111122 5567
Q ss_pred CCCEEEEeccCCh
Q 007805 387 DVDMVIEAVIESV 399 (589)
Q Consensus 387 ~aDlVIeavpe~~ 399 (589)
++|+||-|+|-..
T Consensus 185 ~~DivInaTp~g~ 197 (278)
T PRK00258 185 DFDLIINATSAGM 197 (278)
T ss_pred cCCEEEECCcCCC
Confidence 8999999998433
No 365
>PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase
Probab=96.62 E-value=0.014 Score=68.44 Aligned_cols=121 Identities=15% Similarity=0.135 Sum_probs=69.0
Q ss_pred HHHHHHHHHHHHHHhCCHH-----HHhHHHHHHHhhhccCCCCCCCCCCCCCccceEEEEcCCCCcHHHHHHHHhC-CCe
Q 007805 260 YSGVLKEAKVFKELVMLDT-----SRGLVHVFFAQRATSKVPNVTDIGLKPRGVRKVAVIGGGLMGSGIATAHILN-NIY 333 (589)
Q Consensus 260 ~~~l~~E~~~~~~~~~s~~-----~~~~i~af~~~r~~~~~~~~~~~~~~~~~~~kI~IIG~G~mG~~iA~~l~~~-G~~ 333 (589)
++.|......+..+....+ ..+..+.|..+.+-+..-...........+++|+|||+|.||...|..|++. +++
T Consensus 516 ~~~L~~i~~~l~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rIlVLGAG~VG~~~a~~La~~~~~~ 595 (1042)
T PLN02819 516 KEVLDQIIDSLTRLANPNEDYISPAREANKIFLKIGKVQQENECNEKAEVTKKSQNVLILGAGRVCRPAAEYLASVKTIS 595 (1042)
T ss_pred HHHHHHHHHHHHHhccccccccccchhhhhhhhhhhcccccccccccccccccCCcEEEECCCHHHHHHHHHHHhCcCcc
Confidence 4444444444444443221 2345555554444332111111122334578999999999999999999875 334
Q ss_pred -------------EEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccc-cCCc----cCCCCCCEEEEec
Q 007805 334 -------------VVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKG-VLDY----SEFKDVDMVIEAV 395 (589)
Q Consensus 334 -------------V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~-~~~~----~~~~~aDlVIeav 395 (589)
|++.|++++.++.+.+.+. + + ..+.. .+|. +.++++|+||.|+
T Consensus 596 ~~~~~~~~~~~~lV~VaD~~~~~a~~la~~~~---------~-~---------~~v~lDv~D~e~L~~~v~~~DaVIsal 656 (1042)
T PLN02819 596 YYGDDSEEPTDVHVIVASLYLKDAKETVEGIE---------N-A---------EAVQLDVSDSESLLKYVSQVDVVISLL 656 (1042)
T ss_pred ccccccccccccEEEEECCCHHHHHHHHHhcC---------C-C---------ceEEeecCCHHHHHHhhcCCCEEEECC
Confidence 9999999888766433110 0 0 00111 2232 3357899999999
Q ss_pred cCCh
Q 007805 396 IESV 399 (589)
Q Consensus 396 pe~~ 399 (589)
|...
T Consensus 657 P~~~ 660 (1042)
T PLN02819 657 PASC 660 (1042)
T ss_pred Cchh
Confidence 9654
No 366
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=96.62 E-value=0.025 Score=54.33 Aligned_cols=126 Identities=20% Similarity=0.257 Sum_probs=75.4
Q ss_pred ceEEEEcCCCCcHHHHHHHHhCCCeEEEEeCChH-HHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccC---CccC
Q 007805 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSE-YLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVL---DYSE 384 (589)
Q Consensus 309 ~kI~IIG~G~mG~~iA~~l~~~G~~V~~~d~~~~-~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~---~~~~ 384 (589)
++|.|||+|.+|...+..|.+.|.+|++++++.. .+.. +.+.+. +.+.. ..+.
T Consensus 11 k~vLVIGgG~va~~ka~~Ll~~ga~V~VIs~~~~~~l~~-----------l~~~~~------------i~~~~~~~~~~~ 67 (202)
T PRK06718 11 KRVVIVGGGKVAGRRAITLLKYGAHIVVISPELTENLVK-----------LVEEGK------------IRWKQKEFEPSD 67 (202)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCeEEEEcCCCCHHHHH-----------HHhCCC------------EEEEecCCChhh
Confidence 6899999999999999999999999999987532 1221 122222 11111 1245
Q ss_pred CCCCCEEEEeccCChHHHHHHHHHHHHhCCCCcEEEecCCCCCHHHHhcccCCCCcEEEecCCCCC--CCCCeeeEecCC
Q 007805 385 FKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPA--HVMPLLEIVRTE 462 (589)
Q Consensus 385 ~~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~~~~~~~~~~~r~ig~h~~~p~--~~~~lveiv~~~ 462 (589)
+.++|+||.|+. +.++...+... +..+. ++.+....+. ..|..|. ..+++..-+.+.
T Consensus 68 l~~adlViaaT~-d~elN~~i~~~----a~~~~-lvn~~d~~~~---------------~~f~~Pa~~~~g~l~iaIsT~ 126 (202)
T PRK06718 68 IVDAFLVIAATN-DPRVNEQVKED----LPENA-LFNVITDAES---------------GNVVFPSALHRGKLTISVSTD 126 (202)
T ss_pred cCCceEEEEcCC-CHHHHHHHHHH----HHhCC-cEEECCCCcc---------------CeEEEeeEEEcCCeEEEEECC
Confidence 789999998875 55555555433 33333 3333221111 1222332 344556666777
Q ss_pred CCCHHHHHHHHHHHHH
Q 007805 463 RTSAQVILDLMTVGKI 478 (589)
Q Consensus 463 ~t~~e~~~~~~~l~~~ 478 (589)
+.+|.....+++-++.
T Consensus 127 G~sP~la~~lr~~ie~ 142 (202)
T PRK06718 127 GASPKLAKKIRDELEA 142 (202)
T ss_pred CCChHHHHHHHHHHHH
Confidence 7788777777766654
No 367
>COG1486 CelF Alpha-galactosidases/6-phospho-beta-glucosidases, family 4 of glycosyl hydrolases [Carbohydrate transport and metabolism]
Probab=96.62 E-value=0.016 Score=61.09 Aligned_cols=76 Identities=20% Similarity=0.242 Sum_probs=51.8
Q ss_pred cceEEEEcCCCCcHHHH-HHHHh-----CCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCC
Q 007805 308 VRKVAVIGGGLMGSGIA-TAHIL-----NNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLD 381 (589)
Q Consensus 308 ~~kI~IIG~G~mG~~iA-~~l~~-----~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~ 381 (589)
..||+|||+|.-+.+-- ..+.. .+.++.++|+++++++. +.....++++.-..+ -++..++|
T Consensus 3 ~~KI~iIGgGSt~tp~~v~g~l~~~e~l~~~el~L~Did~~r~~~----i~~~~~~~v~~~g~~--------~kv~~ttd 70 (442)
T COG1486 3 KFKIVIIGGGSTYTPKLLLGDLARTEELPVRELALYDIDEERLKI----IAILAKKLVEEAGAP--------VKVEATTD 70 (442)
T ss_pred cceEEEECCCccccHHHHHHHHhcCccCCcceEEEEeCCHHHHHH----HHHHHHHHHHhhCCC--------eEEEEecC
Confidence 35899999999876643 22222 24589999999999873 233333444433222 34777888
Q ss_pred c-cCCCCCCEEEEec
Q 007805 382 Y-SEFKDVDMVIEAV 395 (589)
Q Consensus 382 ~-~~~~~aDlVIeav 395 (589)
. +++++||+||.++
T Consensus 71 ~~eAl~gAdfVi~~~ 85 (442)
T COG1486 71 RREALEGADFVITQI 85 (442)
T ss_pred HHHHhcCCCEEEEEE
Confidence 8 8899999999776
No 368
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=96.57 E-value=0.012 Score=56.64 Aligned_cols=131 Identities=18% Similarity=0.191 Sum_probs=77.3
Q ss_pred ceEEEEcCCCCcHHHHHHHHhCCCeEEEEeCChH-HHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCccCCCC
Q 007805 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSE-YLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKD 387 (589)
Q Consensus 309 ~kI~IIG~G~mG~~iA~~l~~~G~~V~~~d~~~~-~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~ 387 (589)
++|.|||.|.+|..-+..|++.|.+|++++.+.. .+.. +.+.|.+. .+.-.-..+.+.+
T Consensus 10 k~vlVvGgG~va~rk~~~Ll~~ga~VtVvsp~~~~~l~~-----------l~~~~~i~---------~~~~~~~~~dl~~ 69 (205)
T TIGR01470 10 RAVLVVGGGDVALRKARLLLKAGAQLRVIAEELESELTL-----------LAEQGGIT---------WLARCFDADILEG 69 (205)
T ss_pred CeEEEECcCHHHHHHHHHHHHCCCEEEEEcCCCCHHHHH-----------HHHcCCEE---------EEeCCCCHHHhCC
Confidence 5899999999999999999999999999987654 1111 12223221 0000111245789
Q ss_pred CCEEEEeccCChHHHHHHHHHHHHhCCCCcEEEecCCCCCHHHHhcccCCCCcEEEecCCCC--CCCCCeeeEecCCCCC
Q 007805 388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSP--AHVMPLLEIVRTERTS 465 (589)
Q Consensus 388 aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~~~~~~~~~~~r~ig~h~~~p--~~~~~lveiv~~~~t~ 465 (589)
+|+||.|.. +.++...++.... ...+++.+.+.... ..|..| ...++++.-+.+.+.+
T Consensus 70 ~~lVi~at~-d~~ln~~i~~~a~----~~~ilvn~~d~~e~---------------~~f~~pa~~~~g~l~iaisT~G~s 129 (205)
T TIGR01470 70 AFLVIAATD-DEELNRRVAHAAR----ARGVPVNVVDDPEL---------------CSFIFPSIVDRSPVVVAISSGGAA 129 (205)
T ss_pred cEEEEECCC-CHHHHHHHHHHHH----HcCCEEEECCCccc---------------CeEEEeeEEEcCCEEEEEECCCCC
Confidence 999998854 5555555554433 33344433322111 122233 2344555566777778
Q ss_pred HHHHHHHHHHHHHc
Q 007805 466 AQVILDLMTVGKII 479 (589)
Q Consensus 466 ~e~~~~~~~l~~~l 479 (589)
|.....+++-++.+
T Consensus 130 P~la~~lr~~ie~~ 143 (205)
T TIGR01470 130 PVLARLLRERIETL 143 (205)
T ss_pred cHHHHHHHHHHHHh
Confidence 87777776666543
No 369
>PRK09310 aroDE bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase protein; Reviewed
Probab=96.57 E-value=0.004 Score=67.88 Aligned_cols=70 Identities=17% Similarity=0.207 Sum_probs=50.9
Q ss_pred ceEEEEcCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCccCCCCC
Q 007805 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKDV 388 (589)
Q Consensus 309 ~kI~IIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~a 388 (589)
++++|+|+|.||.+++..|+..|++|+++++++++.+...+.+ .....+ ..+...+.++
T Consensus 333 k~vlIiGaGgiG~aia~~L~~~G~~V~i~~R~~~~~~~la~~~--------~~~~~~-------------~~~~~~l~~~ 391 (477)
T PRK09310 333 QHVAIVGAGGAAKAIATTLARAGAELLIFNRTKAHAEALASRC--------QGKAFP-------------LESLPELHRI 391 (477)
T ss_pred CEEEEEcCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHh--------ccceec-------------hhHhcccCCC
Confidence 5799999999999999999999999999999988766542211 000011 1122335789
Q ss_pred CEEEEeccCCh
Q 007805 389 DMVIEAVIESV 399 (589)
Q Consensus 389 DlVIeavpe~~ 399 (589)
|+||.|+|...
T Consensus 392 DiVInatP~g~ 402 (477)
T PRK09310 392 DIIINCLPPSV 402 (477)
T ss_pred CEEEEcCCCCC
Confidence 99999998654
No 370
>PRK06823 ornithine cyclodeaminase; Validated
Probab=96.53 E-value=0.0077 Score=61.92 Aligned_cols=94 Identities=12% Similarity=0.106 Sum_probs=64.5
Q ss_pred cceEEEEcCCCCcHHHHHHHHhC-C-CeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cC
Q 007805 308 VRKVAVIGGGLMGSGIATAHILN-N-IYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SE 384 (589)
Q Consensus 308 ~~kI~IIG~G~mG~~iA~~l~~~-G-~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~ 384 (589)
.++++|||+|.++...+..+... . -+|.+|++++++.++..+.++. .+ -.+...++. ++
T Consensus 128 ~~~l~iiG~G~qA~~~~~a~~~v~~i~~v~v~~r~~~~a~~~~~~~~~-------~~-----------~~v~~~~~~~~a 189 (315)
T PRK06823 128 VSAIGIVGTGIQARMQLMYLKNVTDCRQLWVWGRSETALEEYRQYAQA-------LG-----------FAVNTTLDAAEV 189 (315)
T ss_pred CCEEEEECCcHHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHHHHHHh-------cC-----------CcEEEECCHHHH
Confidence 36899999999999998887653 2 3899999999998875443221 11 123334555 77
Q ss_pred CCCCCEEEEeccCChHHHHHHHHHHHHhCCCCcEEEecCCC
Q 007805 385 FKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTST 425 (589)
Q Consensus 385 ~~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~ 425 (589)
+++||+|+.|++..-.+ +. .+.+++++.|....|.
T Consensus 190 v~~ADIV~taT~s~~P~----~~--~~~l~~G~hi~~iGs~ 224 (315)
T PRK06823 190 AHAANLIVTTTPSREPL----LQ--AEDIQPGTHITAVGAD 224 (315)
T ss_pred hcCCCEEEEecCCCCce----eC--HHHcCCCcEEEecCCC
Confidence 89999999998754432 21 1346788887665554
No 371
>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2.5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.
Probab=96.39 E-value=0.013 Score=58.43 Aligned_cols=99 Identities=19% Similarity=0.227 Sum_probs=53.0
Q ss_pred cceEEEEcCCCCcHHHHHHHHhC--CCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhccccc-CCc--
Q 007805 308 VRKVAVIGGGLMGSGIATAHILN--NIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGV-LDY-- 382 (589)
Q Consensus 308 ~~kI~IIG~G~mG~~iA~~l~~~--G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~-~~~-- 382 (589)
-+||++||+|.+-.+.-...... |..|..+|+++++.+.+.+-+...+. +. .++++. .|.
T Consensus 121 p~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~~~--L~-------------~~m~f~~~d~~~ 185 (276)
T PF03059_consen 121 PSRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASDLG--LS-------------KRMSFITADVLD 185 (276)
T ss_dssp --EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH---H--H--------------SSEEEEES-GGG
T ss_pred cceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhccc--cc-------------CCeEEEecchhc
Confidence 36999999999976654443333 45789999999998887543221110 11 222221 121
Q ss_pred --cCCCCCCEEEEecc--CChHHHHHHHHHHHHhCCCCcEEEe
Q 007805 383 --SEFKDVDMVIEAVI--ESVPLKQKIFSELEKACPPHCILAT 421 (589)
Q Consensus 383 --~~~~~aDlVIeavp--e~~~~k~~v~~~l~~~~~~~~ii~s 421 (589)
..+++.|+|+.|.- .+.+-|.+++..|.++++++++|+.
T Consensus 186 ~~~dl~~~DvV~lAalVg~~~e~K~~Il~~l~~~m~~ga~l~~ 228 (276)
T PF03059_consen 186 VTYDLKEYDVVFLAALVGMDAEPKEEILEHLAKHMAPGARLVV 228 (276)
T ss_dssp G-GG----SEEEE-TT-S----SHHHHHHHHHHHS-TTSEEEE
T ss_pred cccccccCCEEEEhhhcccccchHHHHHHHHHhhCCCCcEEEE
Confidence 34688999999873 2334799999999999999998863
No 372
>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B ....
Probab=96.38 E-value=0.0052 Score=57.70 Aligned_cols=36 Identities=17% Similarity=0.207 Sum_probs=33.1
Q ss_pred EEEEcC-CCCcHHHHHHHHhCCCeEEEEeCChHHHHH
Q 007805 311 VAVIGG-GLMGSGIATAHILNNIYVVLKEVNSEYLLK 346 (589)
Q Consensus 311 I~IIG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~ 346 (589)
|.|+|+ |.+|..++..|.+.|++|++..|++++.+.
T Consensus 1 I~V~GatG~vG~~l~~~L~~~~~~V~~~~R~~~~~~~ 37 (183)
T PF13460_consen 1 ILVFGATGFVGRALAKQLLRRGHEVTALVRSPSKAED 37 (183)
T ss_dssp EEEETTTSHHHHHHHHHHHHTTSEEEEEESSGGGHHH
T ss_pred eEEECCCChHHHHHHHHHHHCCCEEEEEecCchhccc
Confidence 789997 999999999999999999999999987654
No 373
>PRK07589 ornithine cyclodeaminase; Validated
Probab=96.37 E-value=0.014 Score=60.69 Aligned_cols=93 Identities=14% Similarity=0.149 Sum_probs=63.5
Q ss_pred cceEEEEcCCCCcHHHHHHHHh-CC-CeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cC
Q 007805 308 VRKVAVIGGGLMGSGIATAHIL-NN-IYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SE 384 (589)
Q Consensus 308 ~~kI~IIG~G~mG~~iA~~l~~-~G-~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~ 384 (589)
.++++|||+|..+...+..+.. .. -+|++|++++++.+...+++.. .+ -.+...++. ++
T Consensus 129 a~~l~iiGaG~QA~~~l~a~~~vr~i~~V~v~~r~~~~a~~~~~~~~~-------~~-----------~~v~~~~~~~~a 190 (346)
T PRK07589 129 SRTMALIGNGAQSEFQALAFKALLGIEEIRLYDIDPAATAKLARNLAG-------PG-----------LRIVACRSVAEA 190 (346)
T ss_pred CcEEEEECCcHHHHHHHHHHHHhCCceEEEEEeCCHHHHHHHHHHHHh-------cC-----------CcEEEeCCHHHH
Confidence 3679999999999888766654 23 3899999999998876554331 11 023345556 77
Q ss_pred CCCCCEEEEeccCC---hHHHHHHHHHHHHhCCCCcEEEecCCC
Q 007805 385 FKDVDMVIEAVIES---VPLKQKIFSELEKACPPHCILATNTST 425 (589)
Q Consensus 385 ~~~aDlVIeavpe~---~~~k~~v~~~l~~~~~~~~ii~s~ts~ 425 (589)
+++||+|+-|++.. +-++. +.+++++.|....|.
T Consensus 191 v~~ADIIvtaT~S~~~~Pvl~~-------~~lkpG~hV~aIGs~ 227 (346)
T PRK07589 191 VEGADIITTVTADKTNATILTD-------DMVEPGMHINAVGGD 227 (346)
T ss_pred HhcCCEEEEecCCCCCCceecH-------HHcCCCcEEEecCCC
Confidence 89999999999743 21222 346888887665553
No 374
>PF02423 OCD_Mu_crystall: Ornithine cyclodeaminase/mu-crystallin family; InterPro: IPR003462 This entry represents the bacterial ornithine cyclodeaminase enzyme family, which catalyse the deamination of ornithine to proline []. The family also includes mu-crystallin, a mammalian homologue of bacterial ornithine cyclodeaminase [], which is the major component of the eye lens in several Australian marsupials. mRNA for mu-crystallin has also been found in human retina [].; PDB: 1U7H_B 1X7D_B 2I99_B 3HDJ_A 1VLL_B 1OMO_A.
Probab=96.36 E-value=0.0035 Score=64.51 Aligned_cols=93 Identities=18% Similarity=0.171 Sum_probs=55.0
Q ss_pred ceEEEEcCCCCcHHHHHHHHh-CCC-eEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cCC
Q 007805 309 RKVAVIGGGLMGSGIATAHIL-NNI-YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEF 385 (589)
Q Consensus 309 ~kI~IIG~G~mG~~iA~~l~~-~G~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~ 385 (589)
++++|||+|..+..-+..++. .+. +|.+|++++++.++..++++. .+ -.+...++. +++
T Consensus 129 ~~l~viGaG~QA~~~~~a~~~~~~i~~v~v~~r~~~~~~~~~~~~~~-------~~-----------~~v~~~~~~~~av 190 (313)
T PF02423_consen 129 RTLGVIGAGVQARWHLRALAAVRPIKEVRVYSRSPERAEAFAARLRD-------LG-----------VPVVAVDSAEEAV 190 (313)
T ss_dssp -EEEEE--SHHHHHHHHHHHHHS--SEEEEE-SSHHHHHHHHHHHHC-------CC-----------TCEEEESSHHHHH
T ss_pred ceEEEECCCHHHHHHHHHHHHhCCceEEEEEccChhHHHHHHHhhcc-------cc-----------ccceeccchhhhc
Confidence 579999999999998887765 444 899999999988876554331 01 124455666 779
Q ss_pred CCCCEEEEeccCCh--HHHHHHHHHHHHhCCCCcEEEecCCC
Q 007805 386 KDVDMVIEAVIESV--PLKQKIFSELEKACPPHCILATNTST 425 (589)
Q Consensus 386 ~~aDlVIeavpe~~--~~k~~v~~~l~~~~~~~~ii~s~ts~ 425 (589)
++||+|+.|+|..- .+ +. .+.+++++.|.+..+.
T Consensus 191 ~~aDii~taT~s~~~~P~----~~--~~~l~~g~hi~~iGs~ 226 (313)
T PF02423_consen 191 RGADIIVTATPSTTPAPV----FD--AEWLKPGTHINAIGSY 226 (313)
T ss_dssp TTSSEEEE----SSEEES----B---GGGS-TT-EEEE-S-S
T ss_pred ccCCEEEEccCCCCCCcc----cc--HHHcCCCcEEEEecCC
Confidence 99999999997544 22 11 1357788887766554
No 375
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=96.36 E-value=0.11 Score=53.30 Aligned_cols=41 Identities=24% Similarity=0.153 Sum_probs=32.0
Q ss_pred ceEEEEcCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHH
Q 007805 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIK 349 (589)
Q Consensus 309 ~kI~IIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~ 349 (589)
++|+|+|+|-+|..-.+.....|.+|+.+|+++++++.+++
T Consensus 168 ~~V~I~G~GGlGh~avQ~Aka~ga~Via~~~~~~K~e~a~~ 208 (339)
T COG1064 168 KWVAVVGAGGLGHMAVQYAKAMGAEVIAITRSEEKLELAKK 208 (339)
T ss_pred CEEEEECCcHHHHHHHHHHHHcCCeEEEEeCChHHHHHHHH
Confidence 68999999966554444444479999999999999888643
No 376
>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]
Probab=96.34 E-value=0.0095 Score=62.69 Aligned_cols=41 Identities=27% Similarity=0.239 Sum_probs=36.6
Q ss_pred ceEEEEcCCCCcHHHHHHHHhCC-CeEEEEeCChHHHHHHHH
Q 007805 309 RKVAVIGGGLMGSGIATAHILNN-IYVVLKEVNSEYLLKGIK 349 (589)
Q Consensus 309 ~kI~IIG~G~mG~~iA~~l~~~G-~~V~~~d~~~~~~~~~~~ 349 (589)
++|.|||+|-||...|.+|+.+| ..|++.+|+.++.....+
T Consensus 179 ~~vlvIGAGem~~lva~~L~~~g~~~i~IaNRT~erA~~La~ 220 (414)
T COG0373 179 KKVLVIGAGEMGELVAKHLAEKGVKKITIANRTLERAEELAK 220 (414)
T ss_pred CeEEEEcccHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHH
Confidence 68999999999999999999999 489999999998876533
No 377
>TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type. This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway.
Probab=96.33 E-value=0.008 Score=60.91 Aligned_cols=41 Identities=17% Similarity=0.122 Sum_probs=36.2
Q ss_pred ceEEEEcCCCCcHHHHHHHHhCCC-eEEEEeCChHHHHHHHH
Q 007805 309 RKVAVIGGGLMGSGIATAHILNNI-YVVLKEVNSEYLLKGIK 349 (589)
Q Consensus 309 ~kI~IIG~G~mG~~iA~~l~~~G~-~V~~~d~~~~~~~~~~~ 349 (589)
++|.|||+|-+|++++..|+..|. +|++++|++++.+...+
T Consensus 126 k~vlvlGaGGaarai~~aL~~~G~~~i~I~nRt~~ka~~La~ 167 (282)
T TIGR01809 126 FRGLVIGAGGTSRAAVYALASLGVTDITVINRNPDKLSRLVD 167 (282)
T ss_pred ceEEEEcCcHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHH
Confidence 579999999999999999999997 79999999988766533
No 378
>PRK14189 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=96.26 E-value=0.0079 Score=60.33 Aligned_cols=71 Identities=17% Similarity=0.273 Sum_probs=54.5
Q ss_pred ceEEEEcCCCC-cHHHHHHHHhCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cCCC
Q 007805 309 RKVAVIGGGLM-GSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFK 386 (589)
Q Consensus 309 ~kI~IIG~G~m-G~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~ 386 (589)
++|.|||.|.. |.++|..|.+.|..|+++..... ++ +.++
T Consensus 159 k~vvViGrs~iVGkPla~lL~~~~atVt~~hs~t~--------------------------------------~l~~~~~ 200 (285)
T PRK14189 159 AHAVVIGRSNIVGKPMAMLLLQAGATVTICHSKTR--------------------------------------DLAAHTR 200 (285)
T ss_pred CEEEEECCCCccHHHHHHHHHHCCCEEEEecCCCC--------------------------------------CHHHHhh
Confidence 68999999877 99999999999999998764322 22 4478
Q ss_pred CCCEEEEeccCChHHHHHHHHHHHHhCCCCcEEEecCC
Q 007805 387 DVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTS 424 (589)
Q Consensus 387 ~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts 424 (589)
+||+||.|++. ..++.. +.+++++++++...
T Consensus 201 ~ADIVV~avG~-----~~~i~~--~~ik~gavVIDVGi 231 (285)
T PRK14189 201 QADIVVAAVGK-----RNVLTA--DMVKPGATVIDVGM 231 (285)
T ss_pred hCCEEEEcCCC-----cCccCH--HHcCCCCEEEEccc
Confidence 99999999982 233332 67899999887553
No 379
>PRK06199 ornithine cyclodeaminase; Validated
Probab=96.22 E-value=0.013 Score=61.80 Aligned_cols=97 Identities=16% Similarity=0.152 Sum_probs=62.4
Q ss_pred cceEEEEcCCCCcHHHHHHHHh-C-CC-eEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-c
Q 007805 308 VRKVAVIGGGLMGSGIATAHIL-N-NI-YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-S 383 (589)
Q Consensus 308 ~~kI~IIG~G~mG~~iA~~l~~-~-G~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~ 383 (589)
.++++|||+|.++......++. . .+ +|.+|++++++.+...+++...+. +. ..+...++. +
T Consensus 155 a~~l~iiG~G~QA~~~l~a~~~v~~~i~~V~v~~r~~~~a~~f~~~~~~~~~-----~~----------~~v~~~~s~~e 219 (379)
T PRK06199 155 SKVVGLLGPGVMGKTILAAFMAVCPGIDTIKIKGRGQKSLDSFATWVAETYP-----QI----------TNVEVVDSIEE 219 (379)
T ss_pred CCEEEEECCcHHHHHHHHHHHHhcCCccEEEEECCCHHHHHHHHHHHHHhcC-----CC----------ceEEEeCCHHH
Confidence 4789999999999999988876 3 23 899999999998876544332110 10 014445566 7
Q ss_pred CCCCCCEEEEeccCCh--HHHHHHHHHHHHhCCCCcEEEe
Q 007805 384 EFKDVDMVIEAVIESV--PLKQKIFSELEKACPPHCILAT 421 (589)
Q Consensus 384 ~~~~aDlVIeavpe~~--~~k~~v~~~l~~~~~~~~ii~s 421 (589)
++++||+|+-|++..- ..+..++. .+.+++++.|..
T Consensus 220 av~~ADIVvtaT~s~~~~~s~~Pv~~--~~~lkpG~hv~~ 257 (379)
T PRK06199 220 VVRGSDIVTYCNSGETGDPSTYPYVK--REWVKPGAFLLM 257 (379)
T ss_pred HHcCCCEEEEccCCCCCCCCcCcEec--HHHcCCCcEEec
Confidence 7899999999985321 00111221 134667776654
No 380
>PRK00961 H(2)-dependent methylenetetrahydromethanopterin dehydrogenase; Provisional
Probab=96.21 E-value=0.11 Score=51.01 Aligned_cols=116 Identities=16% Similarity=0.145 Sum_probs=74.9
Q ss_pred cccc-CCccCCCCCCEEEEeccCChHHHHHHHHHHHHhCCCCcEEEecCCCCCHHHHhc---ccCC-CCcEEEecCCCCC
Q 007805 376 LKGV-LDYSEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGE---KTSS-QDRIIGAHFFSPA 450 (589)
Q Consensus 376 i~~~-~~~~~~~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~~~~~---~~~~-~~r~ig~h~~~p~ 450 (589)
+..+ +|.++++++|++|.-+|.-- ....+.+++.+++++++|| +||-+++...+.. .+++ .-.+..+||-.-|
T Consensus 129 vkVtsDD~EAvk~aei~I~ftPfG~-~t~~Iikki~~~ipEgAII-~~tCTIpt~~ly~~le~l~R~DvgIsS~HPaaVP 206 (342)
T PRK00961 129 LKVTTDDREAVADADIVITWLPKGG-MQPDIIEKFADDIKEGAIV-THACTIPTTKFAKIFKDLGRDDLNVTSYHPGAVP 206 (342)
T ss_pred ceEecCcHHHhcCCCEEEEecCCCC-CchHHHHHHHhhCCCCCEE-eccccCCHHHHHHHHHHhCcccCCeeccCCCCCC
Confidence 4444 45599999999999998432 1247888999999999987 4555555544333 3332 2245556664322
Q ss_pred CCCCeeeEecCCCCCHHHHHHHHHHHHHcCCeeEEE-cCCCCccc
Q 007805 451 HVMPLLEIVRTERTSAQVILDLMTVGKIIKKVPVVV-GNCTGFAV 494 (589)
Q Consensus 451 ~~~~lveiv~~~~t~~e~~~~~~~l~~~lG~~~v~v-~d~~Gfi~ 494 (589)
.. +.=..+.-...++|.++++.++.+..|+.++++ .+..+-|.
T Consensus 207 gt-~Gq~~i~egyAtEEqI~klveL~~sa~k~ay~~PA~lvspV~ 250 (342)
T PRK00961 207 EM-KGQVYIAEGYADEEAVEKLYEIGKKARGNAFKMPANLIGPVC 250 (342)
T ss_pred CC-CCceecccccCCHHHHHHHHHHHHHhCCCeeecchhhcchhh
Confidence 21 111122334568999999999999999999998 44443333
No 381
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=96.20 E-value=0.032 Score=48.14 Aligned_cols=94 Identities=21% Similarity=0.141 Sum_probs=57.6
Q ss_pred EEEEcCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCC-HHHHHHHhhcccccCCccCCCCCC
Q 007805 311 VAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLT-QDKANNALKMLKGVLDYSEFKDVD 389 (589)
Q Consensus 311 I~IIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~i~~~~~~~~~~~aD 389 (589)
|.|+|.|.+|..++..|.+.+.+|+++|.+++..+.+.+... .+-.|..+ +.... ...+++|+
T Consensus 1 vvI~G~g~~~~~i~~~L~~~~~~vvvid~d~~~~~~~~~~~~-----~~i~gd~~~~~~l~-----------~a~i~~a~ 64 (116)
T PF02254_consen 1 VVIIGYGRIGREIAEQLKEGGIDVVVIDRDPERVEELREEGV-----EVIYGDATDPEVLE-----------RAGIEKAD 64 (116)
T ss_dssp EEEES-SHHHHHHHHHHHHTTSEEEEEESSHHHHHHHHHTTS-----EEEES-TTSHHHHH-----------HTTGGCES
T ss_pred eEEEcCCHHHHHHHHHHHhCCCEEEEEECCcHHHHHHHhccc-----ccccccchhhhHHh-----------hcCccccC
Confidence 579999999999999999977799999999999877533110 00011111 10000 02367899
Q ss_pred EEEEeccCChHHHHHHHHHHHHhCCCCcEEEe
Q 007805 390 MVIEAVIESVPLKQKIFSELEKACPPHCILAT 421 (589)
Q Consensus 390 lVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s 421 (589)
.||.+.+++. ....+...+.+..+.-.+++-
T Consensus 65 ~vv~~~~~d~-~n~~~~~~~r~~~~~~~ii~~ 95 (116)
T PF02254_consen 65 AVVILTDDDE-ENLLIALLARELNPDIRIIAR 95 (116)
T ss_dssp EEEEESSSHH-HHHHHHHHHHHHTTTSEEEEE
T ss_pred EEEEccCCHH-HHHHHHHHHHHHCCCCeEEEE
Confidence 9999987553 333443444444544455543
No 382
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=96.17 E-value=0.015 Score=55.95 Aligned_cols=32 Identities=25% Similarity=0.323 Sum_probs=30.2
Q ss_pred ceEEEEcCCCCcHHHHHHHHhCCC-eEEEEeCC
Q 007805 309 RKVAVIGGGLMGSGIATAHILNNI-YVVLKEVN 340 (589)
Q Consensus 309 ~kI~IIG~G~mG~~iA~~l~~~G~-~V~~~d~~ 340 (589)
.||.|||+|-+|+.+|..|+..|. +++++|.+
T Consensus 22 ~~VlviG~GglGs~ia~~La~~Gv~~i~lvD~d 54 (202)
T TIGR02356 22 SHVLIIGAGGLGSPAALYLAGAGVGTIVIVDDD 54 (202)
T ss_pred CCEEEECCCHHHHHHHHHHHHcCCCeEEEecCC
Confidence 579999999999999999999998 89999987
No 383
>PRK13303 L-aspartate dehydrogenase; Provisional
Probab=96.15 E-value=0.011 Score=59.40 Aligned_cols=68 Identities=18% Similarity=0.215 Sum_probs=41.9
Q ss_pred ceEEEEcCCCCcHHHHHHHHhC-CCeEE-EEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCccCC-
Q 007805 309 RKVAVIGGGLMGSGIATAHILN-NIYVV-LKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEF- 385 (589)
Q Consensus 309 ~kI~IIG~G~mG~~iA~~l~~~-G~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~- 385 (589)
.||+|||+|.||..++..+.+. +.++. +++++.. .+...+. .. ..+..+++++.+
T Consensus 2 ~rVgIiG~G~iG~~~~~~l~~~~~~~l~~v~~~~~~-~~~~~~~--------~~-------------~~~~~~~d~~~l~ 59 (265)
T PRK13303 2 MKVAMIGFGAIGAAVLELLEHDPDLRVDWVIVPEHS-IDAVRRA--------LG-------------EAVRVVSSVDALP 59 (265)
T ss_pred cEEEEECCCHHHHHHHHHHhhCCCceEEEEEEcCCC-HHHHhhh--------hc-------------cCCeeeCCHHHhc
Confidence 5899999999999999998876 56654 3343322 1111000 00 013345555443
Q ss_pred CCCCEEEEeccCC
Q 007805 386 KDVDMVIEAVIES 398 (589)
Q Consensus 386 ~~aDlVIeavpe~ 398 (589)
.+.|+|++|.|..
T Consensus 60 ~~~DvVve~t~~~ 72 (265)
T PRK13303 60 QRPDLVVECAGHA 72 (265)
T ss_pred cCCCEEEECCCHH
Confidence 5689999999843
No 384
>KOG0068 consensus D-3-phosphoglycerate dehydrogenase, D-isomer-specific 2-hydroxy acid dehydrogenase superfamily [Amino acid transport and metabolism]
Probab=96.12 E-value=0.055 Score=54.55 Aligned_cols=91 Identities=13% Similarity=0.040 Sum_probs=66.6
Q ss_pred ceEEEEcCCCCcHHHHHHHHhCCCeEEEEeC-ChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCccCCCC
Q 007805 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEV-NSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKD 387 (589)
Q Consensus 309 ~kI~IIG~G~mG~~iA~~l~~~G~~V~~~d~-~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~ 387 (589)
+++||||.|.+|+-+|.++..-|..|+.||. .+.....+ . .+...+-.|.+..
T Consensus 147 KTLgvlG~GrIGseVA~r~k~~gm~vI~~dpi~~~~~~~a-------------~-------------gvq~vsl~Eil~~ 200 (406)
T KOG0068|consen 147 KTLGVLGLGRIGSEVAVRAKAMGMHVIGYDPITPMALAEA-------------F-------------GVQLVSLEEILPK 200 (406)
T ss_pred cEEEEeecccchHHHHHHHHhcCceEEeecCCCchHHHHh-------------c-------------cceeeeHHHHHhh
Confidence 6899999999999999999999999999985 34332221 1 1222222367889
Q ss_pred CCEEEEeccCChHHHHHHHHHHHHhCCCCcEEEecCCC
Q 007805 388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTST 425 (589)
Q Consensus 388 aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~ 425 (589)
||+|-.=+|-.++.++-+-.+....++++.-|+..+-+
T Consensus 201 ADFitlH~PLtP~T~~lin~~tfA~mKkGVriIN~aRG 238 (406)
T KOG0068|consen 201 ADFITLHVPLTPSTEKLLNDETFAKMKKGVRIINVARG 238 (406)
T ss_pred cCEEEEccCCCcchhhccCHHHHHHhhCCcEEEEecCC
Confidence 99999999988887776666667778888776544434
No 385
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=96.11 E-value=0.012 Score=63.84 Aligned_cols=39 Identities=23% Similarity=0.285 Sum_probs=35.9
Q ss_pred ceEEEEcCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHH
Q 007805 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKG 347 (589)
Q Consensus 309 ~kI~IIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~ 347 (589)
++|.|+|+|.+|..+|..|.+.|++|+++|++++.++.+
T Consensus 1 m~viIiG~G~ig~~~a~~L~~~g~~v~vid~~~~~~~~~ 39 (453)
T PRK09496 1 MKIIIVGAGQVGYTLAENLSGENNDVTVIDTDEERLRRL 39 (453)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCcEEEEECCHHHHHHH
Confidence 379999999999999999999999999999999987764
No 386
>PRK00683 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=96.10 E-value=0.029 Score=60.39 Aligned_cols=37 Identities=30% Similarity=0.452 Sum_probs=33.6
Q ss_pred cceEEEEcCCCCcHHHHHHHHhCCCeEEEEeCChHHH
Q 007805 308 VRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYL 344 (589)
Q Consensus 308 ~~kI~IIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~ 344 (589)
.++|.|||.|.+|.++|..|.+.|++|+++|.+++.+
T Consensus 3 ~~~i~iiGlG~~G~slA~~l~~~G~~V~g~D~~~~~~ 39 (418)
T PRK00683 3 LQRVVVLGLGVTGKSIARFLAQKGVYVIGVDKSLEAL 39 (418)
T ss_pred CCeEEEEEECHHHHHHHHHHHHCCCEEEEEeCCcccc
Confidence 4689999999999999999999999999999887644
No 387
>TIGR01723 hmd_TIGR 5,10-methenyltetrahydromethanopterin hydrogenase. This model represents a clade of authenticated coenzyme N(5),N(10)-methenyltetrahydromethanopterin reductases. This enzyme does not use F420. This enzyme acts in methanogenesis and as such is restricted to methanogenic archaeal species. This clade is one of two clades in pfam model pfam03201.
Probab=96.05 E-value=0.22 Score=48.96 Aligned_cols=113 Identities=18% Similarity=0.174 Sum_probs=74.5
Q ss_pred cccc-CCccCCCCCCEEEEeccCChHHHHHHHHHHHHhCCCCcEEEecCCCCCHH---HHhcccCC-CCcEEEecCCCCC
Q 007805 376 LKGV-LDYSEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLN---IVGEKTSS-QDRIIGAHFFSPA 450 (589)
Q Consensus 376 i~~~-~~~~~~~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~---~~~~~~~~-~~r~ig~h~~~p~ 450 (589)
+..+ +|.++++++|++|.-+|.-- ....+.+++.+++++++||+ ||-+++.. .+.+.+++ .-.+..+||-.-|
T Consensus 127 vkVtsDD~EAv~~aei~I~ftPfG~-~q~~Iikkii~~lpEgAII~-~tCTIpt~~ly~ilE~l~R~DvgVsS~HPaaVP 204 (340)
T TIGR01723 127 LKVTTDDREAVEDADIIITWLPKGN-KQPDIIKKFIDDIPEGAIVT-HACTIPTTKFAKIFEDLGREDLNVTSYHPGCVP 204 (340)
T ss_pred ceEecCcHHHhcCCCEEEEEcCCCC-CchHHHHHHHhhCCCCCEEe-ccccCChHHHHHHHHhhCcccCCeeccCCCCCC
Confidence 4444 45599999999999998532 12478889999999999874 55555544 33333432 2345566764333
Q ss_pred CCCCeeeEecCCCCCHHHHHHHHHHHHHcCCeeEEE-cCCCC
Q 007805 451 HVMPLLEIVRTERTSAQVILDLMTVGKIIKKVPVVV-GNCTG 491 (589)
Q Consensus 451 ~~~~lveiv~~~~t~~e~~~~~~~l~~~lG~~~v~v-~d~~G 491 (589)
..-.-+-++ ....++|.++++.++.+..|+.++++ .+..+
T Consensus 205 gt~~q~Yi~-egyAtEEqI~klveL~~sa~k~ay~~PA~Lvs 245 (340)
T TIGR01723 205 EMKGQVYIA-EGYASEEAVNKLYELGKKARGKAFKMPANLLG 245 (340)
T ss_pred CCCCceEee-cccCCHHHHHHHHHHHHHhCCCeeecchhhcc
Confidence 221222233 34568999999999999999999998 34333
No 388
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=96.01 E-value=0.018 Score=59.81 Aligned_cols=33 Identities=21% Similarity=0.438 Sum_probs=30.9
Q ss_pred ceEEEEcCCCCcHHHHHHHHhCCC-eEEEEeCCh
Q 007805 309 RKVAVIGGGLMGSGIATAHILNNI-YVVLKEVNS 341 (589)
Q Consensus 309 ~kI~IIG~G~mG~~iA~~l~~~G~-~V~~~d~~~ 341 (589)
++|.|||+|-+|+.+|..|+..|+ +++++|.+.
T Consensus 25 ~~VlIiG~GglGs~va~~La~aGvg~i~lvD~D~ 58 (338)
T PRK12475 25 KHVLIVGAGALGAANAEALVRAGIGKLTIADRDY 58 (338)
T ss_pred CcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCc
Confidence 579999999999999999999998 899999975
No 389
>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins. Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al
Probab=95.96 E-value=0.027 Score=45.94 Aligned_cols=32 Identities=34% Similarity=0.412 Sum_probs=28.8
Q ss_pred cceEEEEcCCCCcHHHHHHHHhC-CCeEEEEeC
Q 007805 308 VRKVAVIGGGLMGSGIATAHILN-NIYVVLKEV 339 (589)
Q Consensus 308 ~~kI~IIG~G~mG~~iA~~l~~~-G~~V~~~d~ 339 (589)
-++++|+|.|.+|.+++..+... +.+|.+||+
T Consensus 23 ~~~v~i~G~G~~g~~~a~~l~~~~~~~v~v~~r 55 (86)
T cd05191 23 GKTVVVLGAGEVGKGIAKLLADEGGKKVVLCDR 55 (86)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcC
Confidence 36899999999999999999998 678999986
No 390
>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]
Probab=95.95 E-value=0.018 Score=57.41 Aligned_cols=98 Identities=22% Similarity=0.286 Sum_probs=66.1
Q ss_pred cceEEEEcCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cCCC
Q 007805 308 VRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFK 386 (589)
Q Consensus 308 ~~kI~IIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~ 386 (589)
-.||.|||.|..|.--|+...--|-+|++.|+|.+++.+.... -.+++. -+.+...++ +.+.
T Consensus 168 ~~kv~iiGGGvvgtnaAkiA~glgA~Vtild~n~~rl~~ldd~---------f~~rv~--------~~~st~~~iee~v~ 230 (371)
T COG0686 168 PAKVVVLGGGVVGTNAAKIAIGLGADVTILDLNIDRLRQLDDL---------FGGRVH--------TLYSTPSNIEEAVK 230 (371)
T ss_pred CccEEEECCccccchHHHHHhccCCeeEEEecCHHHHhhhhHh---------hCceeE--------EEEcCHHHHHHHhh
Confidence 3689999999999999998887889999999999988774221 111100 011111223 6789
Q ss_pred CCCEEEEec--cCChHHHHHHHHHHHHhCCCCcEEEecC
Q 007805 387 DVDMVIEAV--IESVPLKQKIFSELEKACPPHCILATNT 423 (589)
Q Consensus 387 ~aDlVIeav--pe~~~~k~~v~~~l~~~~~~~~ii~s~t 423 (589)
.+|+||-+| |-.. .-+-+.++..+.++|+.+|++..
T Consensus 231 ~aDlvIgaVLIpgak-aPkLvt~e~vk~MkpGsVivDVA 268 (371)
T COG0686 231 KADLVIGAVLIPGAK-APKLVTREMVKQMKPGSVIVDVA 268 (371)
T ss_pred hccEEEEEEEecCCC-CceehhHHHHHhcCCCcEEEEEE
Confidence 999999877 3211 11234567777889999887643
No 391
>PRK13940 glutamyl-tRNA reductase; Provisional
Probab=95.94 E-value=0.011 Score=63.16 Aligned_cols=69 Identities=19% Similarity=0.175 Sum_probs=49.7
Q ss_pred ceEEEEcCCCCcHHHHHHHHhCCC-eEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cCCC
Q 007805 309 RKVAVIGGGLMGSGIATAHILNNI-YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFK 386 (589)
Q Consensus 309 ~kI~IIG~G~mG~~iA~~l~~~G~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~ 386 (589)
++|.|||+|-||..++..|+..|. ++++++|+.++.+...+.+. .+. ....+++ +.+.
T Consensus 182 kkvlviGaG~~a~~va~~L~~~g~~~I~V~nRt~~ra~~La~~~~--------~~~------------~~~~~~l~~~l~ 241 (414)
T PRK13940 182 KNVLIIGAGQTGELLFRHVTALAPKQIMLANRTIEKAQKITSAFR--------NAS------------AHYLSELPQLIK 241 (414)
T ss_pred CEEEEEcCcHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHhc--------CCe------------EecHHHHHHHhc
Confidence 679999999999999999999996 79999999887655422111 010 1111222 5678
Q ss_pred CCCEEEEeccC
Q 007805 387 DVDMVIEAVIE 397 (589)
Q Consensus 387 ~aDlVIeavpe 397 (589)
++|+||-|++.
T Consensus 242 ~aDiVI~aT~a 252 (414)
T PRK13940 242 KADIIIAAVNV 252 (414)
T ss_pred cCCEEEECcCC
Confidence 89999999863
No 392
>PRK04207 glyceraldehyde-3-phosphate dehydrogenase; Provisional
Probab=95.93 E-value=0.026 Score=58.74 Aligned_cols=106 Identities=14% Similarity=0.042 Sum_probs=57.1
Q ss_pred ceEEEEcCCCCcHHHHHHHHhC-CCeEE-EEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHH-HHhhcccccCCc-cC
Q 007805 309 RKVAVIGGGLMGSGIATAHILN-NIYVV-LKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKAN-NALKMLKGVLDY-SE 384 (589)
Q Consensus 309 ~kI~IIG~G~mG~~iA~~l~~~-G~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~i~~~~~~-~~ 384 (589)
.||+|+|+|.||..++..+... +++|+ +.|.+++..+...++.. ++. .+... .... -.-..+....++ +.
T Consensus 2 ikVaI~G~GrIGr~va~al~~~~d~eLvav~d~~~~~~~~la~~~G--~~~---~~~~~-~~~~~~~~~~i~V~~~~~el 75 (341)
T PRK04207 2 IKVGVNGYGTIGKRVADAVAAQPDMELVGVAKTKPDYEARVAVEKG--YPL---YVADP-EREKAFEEAGIPVAGTIEDL 75 (341)
T ss_pred eEEEEECCCHHHHHHHHHHhcCCCcEEEEEECCChHHHHHHHHhcC--CCc---cccCc-cccccccCCceEEcCChhHh
Confidence 5899999999999999988764 56766 45666544443222100 000 00000 0000 000123334444 44
Q ss_pred CCCCCEEEEeccCChHHHHHHHHHHHHhCCCCcEEEecCCC
Q 007805 385 FKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTST 425 (589)
Q Consensus 385 ~~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~ 425 (589)
+.++|+||+|.|.... .+... .+++.++.++++++.
T Consensus 76 ~~~vDVVIdaT~~~~~--~e~a~---~~~~aGk~VI~~~~~ 111 (341)
T PRK04207 76 LEKADIVVDATPGGVG--AKNKE---LYEKAGVKAIFQGGE 111 (341)
T ss_pred hccCCEEEECCCchhh--HHHHH---HHHHCCCEEEEcCCC
Confidence 5789999999985443 33333 334445666666653
No 393
>PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=95.92 E-value=0.023 Score=57.42 Aligned_cols=71 Identities=15% Similarity=0.235 Sum_probs=52.0
Q ss_pred ceEEEEcCCC-CcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCccCCCC
Q 007805 309 RKVAVIGGGL-MGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKD 387 (589)
Q Consensus 309 ~kI~IIG~G~-mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~ 387 (589)
++|.|||.|. .|.++|..|.+.|..|+++++....+. +.+++
T Consensus 160 k~vvViG~gg~vGkpia~~L~~~gatVtv~~~~t~~L~-------------------------------------~~~~~ 202 (283)
T PRK14192 160 KHAVVVGRSAILGKPMAMMLLNANATVTICHSRTQNLP-------------------------------------ELVKQ 202 (283)
T ss_pred CEEEEECCcHHHHHHHHHHHHhCCCEEEEEeCCchhHH-------------------------------------HHhcc
Confidence 5899999997 999999999999999999997433221 22478
Q ss_pred CCEEEEeccCChHHHHHHHHHHHHhCCCCcEEEecC
Q 007805 388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNT 423 (589)
Q Consensus 388 aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~t 423 (589)
||+||-|++-.. .+. .+.+++++++++..
T Consensus 203 aDIvI~AtG~~~-----~v~--~~~lk~gavViDvg 231 (283)
T PRK14192 203 ADIIVGAVGKPE-----LIK--KDWIKQGAVVVDAG 231 (283)
T ss_pred CCEEEEccCCCC-----cCC--HHHcCCCCEEEEEE
Confidence 999999995222 111 13478888887543
No 394
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=95.87 E-value=0.055 Score=49.70 Aligned_cols=32 Identities=22% Similarity=0.332 Sum_probs=29.5
Q ss_pred ceEEEEcCCCCcHHHHHHHHhCCCeEEEEeCC
Q 007805 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVN 340 (589)
Q Consensus 309 ~kI~IIG~G~mG~~iA~~l~~~G~~V~~~d~~ 340 (589)
++|.|||.|.+|...+..|.+.|++|++++.+
T Consensus 14 ~~vlVvGGG~va~rka~~Ll~~ga~V~VIsp~ 45 (157)
T PRK06719 14 KVVVIIGGGKIAYRKASGLKDTGAFVTVVSPE 45 (157)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCEEEEEcCc
Confidence 68999999999999999999999999999643
No 395
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=95.87 E-value=0.036 Score=60.45 Aligned_cols=42 Identities=24% Similarity=0.104 Sum_probs=37.8
Q ss_pred cceEEEEcCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHH
Q 007805 308 VRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIK 349 (589)
Q Consensus 308 ~~kI~IIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~ 349 (589)
-.||.|+|+|.+|...+..+...|.+|+++|+++++++.+.+
T Consensus 165 g~kVlViGaG~iGL~Ai~~Ak~lGA~V~a~D~~~~rle~aes 206 (509)
T PRK09424 165 PAKVLVIGAGVAGLAAIGAAGSLGAIVRAFDTRPEVAEQVES 206 (509)
T ss_pred CCEEEEECCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence 378999999999999999988899999999999999888643
No 396
>PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase. Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A.
Probab=95.86 E-value=0.0088 Score=63.61 Aligned_cols=72 Identities=18% Similarity=0.197 Sum_probs=45.7
Q ss_pred EEEEcCCCCcHHHHHHHHhCC-C-eEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCC--c-cCC
Q 007805 311 VAVIGGGLMGSGIATAHILNN-I-YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLD--Y-SEF 385 (589)
Q Consensus 311 I~IIG~G~mG~~iA~~l~~~G-~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~--~-~~~ 385 (589)
|.|+|+|.+|+.++..|++.+ + +|++.|++.+++++..+.+ ....+.. ..+...+. + +.+
T Consensus 1 IlvlG~G~vG~~~~~~L~~~~~~~~v~va~r~~~~~~~~~~~~--------~~~~~~~-------~~~d~~~~~~l~~~~ 65 (386)
T PF03435_consen 1 ILVLGAGRVGSAIARLLARRGPFEEVTVADRNPEKAERLAEKL--------LGDRVEA-------VQVDVNDPESLAELL 65 (386)
T ss_dssp EEEE--SHHHHHHHHHHHCTTCE-EEEEEESSHHHHHHHHT----------TTTTEEE-------EE--TTTHHHHHHHH
T ss_pred CEEEcCcHHHHHHHHHHhcCCCCCcEEEEECCHHHHHHHHhhc--------cccceeE-------EEEecCCHHHHHHHH
Confidence 789999999999999999986 4 8999999999987753321 1111100 00111111 2 457
Q ss_pred CCCCEEEEeccC
Q 007805 386 KDVDMVIEAVIE 397 (589)
Q Consensus 386 ~~aDlVIeavpe 397 (589)
+++|+||.|+|.
T Consensus 66 ~~~dvVin~~gp 77 (386)
T PF03435_consen 66 RGCDVVINCAGP 77 (386)
T ss_dssp TTSSEEEE-SSG
T ss_pred hcCCEEEECCcc
Confidence 899999999974
No 397
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=95.84 E-value=0.054 Score=58.87 Aligned_cols=96 Identities=22% Similarity=0.205 Sum_probs=60.1
Q ss_pred cceEEEEcCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc--cCC
Q 007805 308 VRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY--SEF 385 (589)
Q Consensus 308 ~~kI~IIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~--~~~ 385 (589)
.++|.|+|+|.+|..++..|.+.|++|+++|.++++.+...+.... ..+-.|..+ -...+ ..+
T Consensus 231 ~~~iiIiG~G~~g~~l~~~L~~~~~~v~vid~~~~~~~~~~~~~~~---~~~i~gd~~------------~~~~L~~~~~ 295 (453)
T PRK09496 231 VKRVMIVGGGNIGYYLAKLLEKEGYSVKLIERDPERAEELAEELPN---TLVLHGDGT------------DQELLEEEGI 295 (453)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHCCC---CeEEECCCC------------CHHHHHhcCC
Confidence 5889999999999999999999999999999999987765331100 000011100 00011 346
Q ss_pred CCCCEEEEeccCChHHHHHHHHHHHHhCCCCcEEE
Q 007805 386 KDVDMVIEAVIESVPLKQKIFSELEKACPPHCILA 420 (589)
Q Consensus 386 ~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~ 420 (589)
+++|.||.+.+++.. .-+...+...+.+..+++
T Consensus 296 ~~a~~vi~~~~~~~~--n~~~~~~~~~~~~~~ii~ 328 (453)
T PRK09496 296 DEADAFIALTNDDEA--NILSSLLAKRLGAKKVIA 328 (453)
T ss_pred ccCCEEEECCCCcHH--HHHHHHHHHHhCCCeEEE
Confidence 899999988886532 122223334445555555
No 398
>PF01039 Carboxyl_trans: Carboxyl transferase domain; InterPro: IPR000022 Members in this domain include biotin dependent carboxylases [, ]. The carboxyl transferase domain carries out the following reaction; transcarboxylation from biotin to an acceptor molecule. There are two recognised types of carboxyl transferase. One of them uses acyl-CoA and the other uses 2-oxo acid as the acceptor molecule of carbon dioxide. All of the members in this family utilise acyl-CoA as the acceptor molecule.; GO: 0016874 ligase activity; PDB: 2F9Y_B 1XO6_B 1XNV_B 3MFM_C 3IBB_A 1XNW_F 3IAV_B 1XNY_A 3IB9_A 3U9S_F ....
Probab=95.83 E-value=0.12 Score=56.66 Aligned_cols=145 Identities=21% Similarity=0.192 Sum_probs=91.3
Q ss_pred EEeCCCC--CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCCcCCC--CchhhhhccCCCcccccchhHHHHHHHH
Q 007805 18 ITLINPP--VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGF--DINVFQKVHGAGDVSLMPDVSVELVVNL 93 (589)
Q Consensus 18 i~l~~p~--~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F~aG~--Dl~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (589)
+.-+.+. ..+++......+.++++.+..+ .+-.|.|.- |.|+ ++++-... ...+.... ..+ ..
T Consensus 61 v~a~D~t~~gGs~g~~~~~Ki~ra~~~A~~~-~~P~v~l~d-----sgGa~~r~~eg~~~-----l~~~g~i~-~~~-~~ 127 (493)
T PF01039_consen 61 VIAQDFTVLGGSVGEVHGEKIARAIELALEN-GLPLVYLVD-----SGGAFLRMQEGVES-----LMGMGRIF-RAI-AR 127 (493)
T ss_dssp EEEEETTSGGGTBSHHHHHHHHHHHHHHHHH-TEEEEEEEE-----ESSBCGGGGGHHHH-----HHHHHHHH-HHH-HH
T ss_pred EEEeccceecCCCCcccceeeehHHHHHHHc-CCCcEEecc-----ccccccccchhhhh-----hhhhHHHH-HHH-HH
Confidence 3334443 4789999999999999998866 345555543 3344 33332110 01111212 222 33
Q ss_pred HHhCCCcEEEEeCCcccchhhHHhhhcCEEEEeCC-ceEeccccccCCCCChhhhhhHhhhcCHHHHHHHHHcCCCCCHH
Q 007805 94 IEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPK-TQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSE 172 (589)
Q Consensus 94 l~~~~kp~iaav~G~a~GgG~~lala~D~~ia~~~-a~~~~pe~~~Gl~p~~g~~~~l~~~~G~~~a~~l~ltg~~~~a~ 172 (589)
+.. ..|+|+++.|.|.|||..++..||++|+.++ +.+++. |. . ..+ ..+|+.++.+
T Consensus 128 ~~~-~iP~I~vv~G~~~Gg~A~~~~~~d~~i~~~~~a~i~l~-----------GP---------~-vv~-~~~Ge~~~~~ 184 (493)
T PF01039_consen 128 LSG-GIPQISVVTGPCTGGGAYLAALSDFVIMVKGTARIFLA-----------GP---------R-VVE-SATGEEVDSE 184 (493)
T ss_dssp HHT-TS-EEEEEESEEEGGGGHHHHHSSEEEEETTTCEEESS-----------TH---------H-HHH-HHHSSCTSHH
T ss_pred Hhc-CCCeEEEEccccccchhhcccccCccccCccceEEEec-----------cc---------c-ccc-cccCccccch
Confidence 555 9999999999999999999999999999987 776532 11 1 111 3457888877
Q ss_pred HH-------HHcCCcceecCch-HHHHHHHHHHH
Q 007805 173 EG-------WKLGLIDAVVTSE-ELLKVSRLWAL 198 (589)
Q Consensus 173 ~A-------~~~Glv~~vv~~~-~l~~~a~~~a~ 198 (589)
+. ...|.+|.+++++ +..+.++++..
T Consensus 185 ~lgG~~~h~~~sG~~d~v~~de~~a~~~ir~~ls 218 (493)
T PF01039_consen 185 ELGGADVHAAKSGVVDYVVDDEEDALAQIRRLLS 218 (493)
T ss_dssp HHHBHHHHHHTSSSSSEEESSHHHHHHHHHHHHH
T ss_pred hhhhhhhhcccCCCceEEEechHHHHHHHHHhhc
Confidence 64 4679999999765 33344444443
No 399
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=95.79 E-value=0.047 Score=61.45 Aligned_cols=97 Identities=20% Similarity=0.130 Sum_probs=63.6
Q ss_pred ceEEEEcCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc--cCCC
Q 007805 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY--SEFK 386 (589)
Q Consensus 309 ~kI~IIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~--~~~~ 386 (589)
.+|.|+|.|.+|..++..|.++|++|+++|.|+++++.+.+. ...+-.|..+.. +.+ ..++
T Consensus 401 ~~vII~G~Gr~G~~va~~L~~~g~~vvvID~d~~~v~~~~~~-----g~~v~~GDat~~------------~~L~~agi~ 463 (601)
T PRK03659 401 PQVIIVGFGRFGQVIGRLLMANKMRITVLERDISAVNLMRKY-----GYKVYYGDATQL------------ELLRAAGAE 463 (601)
T ss_pred CCEEEecCchHHHHHHHHHHhCCCCEEEEECCHHHHHHHHhC-----CCeEEEeeCCCH------------HHHHhcCCc
Confidence 589999999999999999999999999999999998875321 000001111100 001 2368
Q ss_pred CCCEEEEeccCChHHHHHHHHHHHHhCCCCcEEEecC
Q 007805 387 DVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNT 423 (589)
Q Consensus 387 ~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~t 423 (589)
+||.||.+++++.. ...+...+.+..++-.|++-..
T Consensus 464 ~A~~vv~~~~d~~~-n~~i~~~~r~~~p~~~IiaRa~ 499 (601)
T PRK03659 464 KAEAIVITCNEPED-TMKIVELCQQHFPHLHILARAR 499 (601)
T ss_pred cCCEEEEEeCCHHH-HHHHHHHHHHHCCCCeEEEEeC
Confidence 99999999986543 3344444555555555665433
No 400
>COG0825 AccA Acetyl-CoA carboxylase alpha subunit [Lipid metabolism]
Probab=95.75 E-value=0.022 Score=56.06 Aligned_cols=84 Identities=21% Similarity=0.210 Sum_probs=65.3
Q ss_pred HHHhCCCcEEEEeCCcccchhhHHhhhcCEEEEeCCceEeccccccCCCCChhhhhhHhhhcCHHHHHHHHHcCCCCCHH
Q 007805 93 LIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSE 172 (589)
Q Consensus 93 ~l~~~~kp~iaav~G~a~GgG~~lala~D~~ia~~~a~~~~pe~~~Gl~p~~g~~~~l~~~~G~~~a~~l~ltg~~~~a~ 172 (589)
.+.+++.|+||.|=|---+||.--..-+|.+++.+.++|+. +.|.++++..|.-- .+|.+. -..-.++|+
T Consensus 183 em~~LkvPiI~iVIGEGgSGGALAi~vad~V~mle~s~ySV------isPEG~AsILWkD~---~ka~eA-Ae~mkita~ 252 (317)
T COG0825 183 EMARLKVPIISIVIGEGGSGGALAIGVADRVLMLENSTYSV------ISPEGCASILWKDA---SKAKEA-AEAMKITAH 252 (317)
T ss_pred HHhCCCCCEEEEEecCCCchhhHHhhHHHHHHHHHhceeee------cChhhhhhhhhcCh---hhhHHH-HHHcCCCHH
Confidence 48899999999999988777766666789999999999983 56777777665443 333332 334579999
Q ss_pred HHHHcCCcceecCc
Q 007805 173 EGWKLGLIDAVVTS 186 (589)
Q Consensus 173 ~A~~~Glv~~vv~~ 186 (589)
+.+++|+||.|+|.
T Consensus 253 dLk~lgiID~II~E 266 (317)
T COG0825 253 DLKELGIIDGIIPE 266 (317)
T ss_pred HHHhCCCcceeccC
Confidence 99999999999974
No 401
>TIGR00036 dapB dihydrodipicolinate reductase.
Probab=95.70 E-value=0.021 Score=57.29 Aligned_cols=101 Identities=21% Similarity=0.111 Sum_probs=55.8
Q ss_pred ceEEEEc-CCCCcHHHHHHHHh-CCCeEE-EEeCC-hHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCccC
Q 007805 309 RKVAVIG-GGLMGSGIATAHIL-NNIYVV-LKEVN-SEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSE 384 (589)
Q Consensus 309 ~kI~IIG-~G~mG~~iA~~l~~-~G~~V~-~~d~~-~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~ 384 (589)
.||+|+| +|.||..++..+.+ .+++++ ++|++ ++...+-.. ... +... ..+..+++++.
T Consensus 2 ikV~IiGa~G~MG~~i~~~i~~~~~~elvav~d~~~~~~~~~~~~-------~~~--~~~~--------~gv~~~~d~~~ 64 (266)
T TIGR00036 2 IKVAVAGAAGRMGRELIKAALAAEGLQLVAAFERHGSSLQGTDAG-------ELA--GIGK--------VGVPVTDDLEA 64 (266)
T ss_pred eEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCccccCCCHH-------Hhc--CcCc--------CCceeeCCHHH
Confidence 4899999 69999999999886 477765 57843 332111000 000 0000 01334556644
Q ss_pred C-CCCCEEEEeccCChHHHHHHHHHHHHhCCCCcEEEecCCCCCHHHH
Q 007805 385 F-KDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIV 431 (589)
Q Consensus 385 ~-~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~~~ 431 (589)
+ .++|+||++.| ++.-.+... ..+..+.-+++.|++...++.
T Consensus 65 l~~~~DvVIdfT~--p~~~~~~~~---~al~~g~~vVigttg~~~e~~ 107 (266)
T TIGR00036 65 VETDPDVLIDFTT--PEGVLNHLK---FALEHGVRLVVGTTGFSEEDK 107 (266)
T ss_pred hcCCCCEEEECCC--hHHHHHHHH---HHHHCCCCEEEECCCCCHHHH
Confidence 3 46899999997 433333333 334444444444446665543
No 402
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=95.67 E-value=0.035 Score=60.34 Aligned_cols=109 Identities=17% Similarity=0.173 Sum_probs=65.2
Q ss_pred ceEEEEcCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHHHHHH-Hh-hHhcC--------CCCHHHHHHHhhcccc
Q 007805 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANV-RG-LVTRG--------KLTQDKANNALKMLKG 378 (589)
Q Consensus 309 ~kI~IIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~-~~-~~~~g--------~~~~~~~~~~~~~i~~ 378 (589)
.||.|+|+|.+|...+..+...|..|+++|+++++++.+.. +.... .- ..+.| .++.+..+.....
T Consensus 165 akVlViGaG~iGl~Aa~~ak~lGA~V~v~d~~~~rle~a~~-lGa~~v~v~~~e~g~~~~gYa~~~s~~~~~~~~~~--- 240 (511)
T TIGR00561 165 AKVLVIGAGVAGLAAIGAANSLGAIVRAFDTRPEVKEQVQS-MGAEFLELDFKEEGGSGDGYAKVMSEEFIAAEMEL--- 240 (511)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH-cCCeEEeccccccccccccceeecCHHHHHHHHHH---
Confidence 78999999999999999999999999999999998777543 11000 00 00000 0111111111000
Q ss_pred cCCccCCCCCCEEEEec--cCChHHHHHHHHHHHHhCCCCcEEEecCC
Q 007805 379 VLDYSEFKDVDMVIEAV--IESVPLKQKIFSELEKACPPHCILATNTS 424 (589)
Q Consensus 379 ~~~~~~~~~aDlVIeav--pe~~~~k~~v~~~l~~~~~~~~ii~s~ts 424 (589)
..+.++++|+||.|+ |.... -+-+.++..+.++++.+|++.+.
T Consensus 241 --~~e~~~~~DIVI~TalipG~~a-P~Lit~emv~~MKpGsvIVDlA~ 285 (511)
T TIGR00561 241 --FAAQAKEVDIIITTALIPGKPA-PKLITEEMVDSMKAGSVIVDLAA 285 (511)
T ss_pred --HHHHhCCCCEEEECcccCCCCC-CeeehHHHHhhCCCCCEEEEeee
Confidence 014578899999998 22211 01134455667888888876543
No 403
>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph
Probab=95.66 E-value=0.064 Score=52.43 Aligned_cols=32 Identities=22% Similarity=0.343 Sum_probs=30.0
Q ss_pred ceEEEEcCCCCcHHHHHHHHhCCCe---EEEEeCC
Q 007805 309 RKVAVIGGGLMGSGIATAHILNNIY---VVLKEVN 340 (589)
Q Consensus 309 ~kI~IIG~G~mG~~iA~~l~~~G~~---V~~~d~~ 340 (589)
++|.|+|+|.+|.++|..|...|.. |+++|++
T Consensus 26 ~rvlvlGAGgAg~aiA~~L~~~G~~~~~i~ivdr~ 60 (226)
T cd05311 26 VKIVINGAGAAGIAIARLLLAAGAKPENIVVVDSK 60 (226)
T ss_pred CEEEEECchHHHHHHHHHHHHcCcCcceEEEEeCC
Confidence 5899999999999999999999974 9999999
No 404
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=95.66 E-value=0.03 Score=62.62 Aligned_cols=95 Identities=13% Similarity=0.108 Sum_probs=61.4
Q ss_pred ceEEEEcCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc--cCCC
Q 007805 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY--SEFK 386 (589)
Q Consensus 309 ~kI~IIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~--~~~~ 386 (589)
.+|-|+|+|.+|..+|..|.+.|++|+++|.|+++.+.+.+. ...+-.|..+.. +.+ ..++
T Consensus 418 ~hiiI~G~G~~G~~la~~L~~~g~~vvvId~d~~~~~~~~~~-----g~~~i~GD~~~~------------~~L~~a~i~ 480 (558)
T PRK10669 418 NHALLVGYGRVGSLLGEKLLAAGIPLVVIETSRTRVDELRER-----GIRAVLGNAANE------------EIMQLAHLD 480 (558)
T ss_pred CCEEEECCChHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHC-----CCeEEEcCCCCH------------HHHHhcCcc
Confidence 689999999999999999999999999999999988776321 000011111100 001 2367
Q ss_pred CCCEEEEeccCChHHHHHHHHHHHHhCCCCcEEEe
Q 007805 387 DVDMVIEAVIESVPLKQKIFSELEKACPPHCILAT 421 (589)
Q Consensus 387 ~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s 421 (589)
+||.|+.+++++.+.. .+...+....+.-.|++-
T Consensus 481 ~a~~viv~~~~~~~~~-~iv~~~~~~~~~~~iiar 514 (558)
T PRK10669 481 CARWLLLTIPNGYEAG-EIVASAREKRPDIEIIAR 514 (558)
T ss_pred ccCEEEEEcCChHHHH-HHHHHHHHHCCCCeEEEE
Confidence 9999999998766533 233334444443345543
No 405
>cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional
Probab=95.64 E-value=0.04 Score=49.42 Aligned_cols=73 Identities=19% Similarity=0.244 Sum_probs=54.6
Q ss_pred ceEEEEcC-CCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCccCCCC
Q 007805 309 RKVAVIGG-GLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKD 387 (589)
Q Consensus 309 ~kI~IIG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~ 387 (589)
++|.|+|- ...|..+|..|.+.|..|+..+.+...++ +.+++
T Consensus 29 k~v~VvGrs~~vG~pla~lL~~~gatV~~~~~~t~~l~-------------------------------------~~v~~ 71 (140)
T cd05212 29 KKVLVVGRSGIVGAPLQCLLQRDGATVYSCDWKTIQLQ-------------------------------------SKVHD 71 (140)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEeCCCCcCHH-------------------------------------HHHhh
Confidence 68999996 56699999999999999999986532222 34789
Q ss_pred CCEEEEeccCChHHHHHHHHHHHHhCCCCcEEEecCCC
Q 007805 388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTST 425 (589)
Q Consensus 388 aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~ 425 (589)
||+||.|+.-..-++. +.+++++++++....
T Consensus 72 ADIVvsAtg~~~~i~~-------~~ikpGa~Vidvg~~ 102 (140)
T cd05212 72 ADVVVVGSPKPEKVPT-------EWIKPGATVINCSPT 102 (140)
T ss_pred CCEEEEecCCCCccCH-------HHcCCCCEEEEcCCC
Confidence 9999999974433333 347899998865443
No 406
>TIGR01117 mmdA methylmalonyl-CoA decarboxylase alpha subunit. This model describes methymalonyl-CoA decarboxylase aplha subunit in archaea and bacteria. Metylmalonyl-CoA decarboxylase Na+ pump is a representative of a class of Na+ transport decarboxylases that couples the energy derived by decarboxylation of carboxylic acid substrates to drive the extrusion of Na+ ion across the membrane.
Probab=95.59 E-value=0.38 Score=52.83 Aligned_cols=141 Identities=16% Similarity=0.141 Sum_probs=84.6
Q ss_pred CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCCcCCCCchhhhhccCCCcccccchhHHHHHHHHHHhCCCcEEEE
Q 007805 25 VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAA 104 (589)
Q Consensus 25 ~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kp~iaa 104 (589)
.-+++....+.+.++++.+.++. +-+|.|.-.|+ +.+++-.. . ...+.+.+ .. .....-..|.|++
T Consensus 95 gGS~g~~~~~K~~r~~e~A~~~~-lPlV~l~dSgG-----arm~eg~~----~-l~~~~~~~-~~--~~~~s~~iP~Isv 160 (512)
T TIGR01117 95 GGSLGEMHAAKIVKIMDLAMKMG-APVVGLNDSGG-----ARIQEAVD----A-LKGYGDIF-YR--NTIASGVVPQISA 160 (512)
T ss_pred ccCCCHHHHHHHHHHHHHHHHcC-CCEEEEecCCC-----CCccccch----h-hhhHHHHH-HH--HHHHcCCCcEEEE
Confidence 47899999999999999987664 44566653332 22221000 0 00111111 11 1123345899999
Q ss_pred eCCcccchhhHHhhhcCEEEEeCCc-eEeccccccCCCCChhhhhhHhhhcCHHHHHHHHHcCCCCCHHHH-----H--H
Q 007805 105 VEGLALGGGLELAMGCHARIAAPKT-QLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEG-----W--K 176 (589)
Q Consensus 105 v~G~a~GgG~~lala~D~~ia~~~a-~~~~pe~~~Gl~p~~g~~~~l~~~~G~~~a~~l~ltg~~~~a~~A-----~--~ 176 (589)
+.|.|.||+......||++|+.+++ .+++ +|...+.. .+|+.+++++. + .
T Consensus 161 v~G~~~GG~a~~~al~D~vim~~~~a~i~~-----------aGP~vv~~-----------~~Ge~v~~e~lGGa~~h~~~ 218 (512)
T TIGR01117 161 IMGPCAGGAVYSPALTDFIYMVDNTSQMFI-----------TGPQVIKT-----------VTGEEVTAEQLGGAMAHNSV 218 (512)
T ss_pred EecCCCcHHHHHHHhcCceEEeccceEEEe-----------cChHHHHh-----------hcCcccchhhcchHHHhccc
Confidence 9999999998887899999999864 3443 11111111 34555555544 3 5
Q ss_pred cCCcceecCch-HHHHHHHHHHHHHH
Q 007805 177 LGLIDAVVTSE-ELLKVSRLWALDIA 201 (589)
Q Consensus 177 ~Glv~~vv~~~-~l~~~a~~~a~~la 201 (589)
-|.+|.+++++ +..+.++++..-+-
T Consensus 219 sGv~d~~~~de~ea~~~~r~~ls~lp 244 (512)
T TIGR01117 219 SGVAHFIAEDDDDCIMLIRRLLSFLP 244 (512)
T ss_pred cceeEEecCChHHHHHHHHHHHHhCC
Confidence 79999998554 55666666665553
No 407
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=95.56 E-value=0.025 Score=58.77 Aligned_cols=33 Identities=21% Similarity=0.414 Sum_probs=30.9
Q ss_pred ceEEEEcCCCCcHHHHHHHHhCCC-eEEEEeCCh
Q 007805 309 RKVAVIGGGLMGSGIATAHILNNI-YVVLKEVNS 341 (589)
Q Consensus 309 ~kI~IIG~G~mG~~iA~~l~~~G~-~V~~~d~~~ 341 (589)
.||.|||+|-+|+.+|..|+..|+ +++++|.+.
T Consensus 25 ~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~ 58 (339)
T PRK07688 25 KHVLIIGAGALGTANAEMLVRAGVGKVTIVDRDY 58 (339)
T ss_pred CcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCc
Confidence 579999999999999999999999 899999874
No 408
>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A.
Probab=95.52 E-value=0.038 Score=47.96 Aligned_cols=80 Identities=15% Similarity=0.145 Sum_probs=54.1
Q ss_pred ceEEEEc----CCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCccC
Q 007805 309 RKVAVIG----GGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSE 384 (589)
Q Consensus 309 ~kI~IIG----~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~ 384 (589)
++|+||| -+.+|.-+...|.++|++|+.++...+.+ ..+....++++
T Consensus 1 ksiAVvGaS~~~~~~g~~v~~~l~~~G~~v~~Vnp~~~~i-----------------------------~G~~~y~sl~e 51 (116)
T PF13380_consen 1 KSIAVVGASDNPGKFGYRVLRNLKAAGYEVYPVNPKGGEI-----------------------------LGIKCYPSLAE 51 (116)
T ss_dssp -EEEEET--SSTTSHHHHHHHHHHHTT-EEEEESTTCSEE-----------------------------TTEE-BSSGGG
T ss_pred CEEEEEcccCCCCChHHHHHHHHHhCCCEEEEECCCceEE-----------------------------CcEEeeccccC
Confidence 5799999 58889999999999999999998764321 12344555543
Q ss_pred C-CCCCEEEEeccCChHHHHHHHHHHHHhCCCCcEEE
Q 007805 385 F-KDVDMVIEAVIESVPLKQKIFSELEKACPPHCILA 420 (589)
Q Consensus 385 ~-~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~ 420 (589)
. ...|+++.++| .+...++++++... ..+.++.
T Consensus 52 ~p~~iDlavv~~~--~~~~~~~v~~~~~~-g~~~v~~ 85 (116)
T PF13380_consen 52 IPEPIDLAVVCVP--PDKVPEIVDEAAAL-GVKAVWL 85 (116)
T ss_dssp CSST-SEEEE-S---HHHHHHHHHHHHHH-T-SEEEE
T ss_pred CCCCCCEEEEEcC--HHHHHHHHHHHHHc-CCCEEEE
Confidence 4 78999999998 66677888887765 3444443
No 409
>PRK08300 acetaldehyde dehydrogenase; Validated
Probab=95.48 E-value=0.068 Score=54.16 Aligned_cols=149 Identities=15% Similarity=0.100 Sum_probs=82.2
Q ss_pred ceEEEEcCCCCcHHHHHHHHhC-CCeEE-EEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCcc---
Q 007805 309 RKVAVIGGGLMGSGIATAHILN-NIYVV-LKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYS--- 383 (589)
Q Consensus 309 ~kI~IIG~G~mG~~iA~~l~~~-G~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~--- 383 (589)
-||+|||+|.+|......+.+. +.++. ++|+++++...... .+.|. -...++++
T Consensus 5 lrVAIIGtG~IGt~hm~~l~~~~~velvAVvdid~es~gla~A---------~~~Gi------------~~~~~~ie~LL 63 (302)
T PRK08300 5 LKVAIIGSGNIGTDLMIKILRSEHLEPGAMVGIDPESDGLARA---------RRLGV------------ATSAEGIDGLL 63 (302)
T ss_pred CeEEEEcCcHHHHHHHHHHhcCCCcEEEEEEeCChhhHHHHHH---------HHcCC------------CcccCCHHHHH
Confidence 5799999999999977777754 56665 78998875322111 11121 01112221
Q ss_pred ---CCCCCCEEEEeccCChHHHHHHHHHHHHhCCCCcEEEecCCCC---------CHHHHhcccCCCCcEEEecC-----
Q 007805 384 ---EFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTI---------DLNIVGEKTSSQDRIIGAHF----- 446 (589)
Q Consensus 384 ---~~~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~---------~~~~~~~~~~~~~r~ig~h~----- 446 (589)
...+.|+|++|+|.... .+.... ..+.++.++++++.. ..+++. ..+..-+...|
T Consensus 64 ~~~~~~dIDiVf~AT~a~~H--~e~a~~---a~eaGk~VID~sPA~~~PlvVP~VN~~~~~---~~~~~~iia~p~~ati 135 (302)
T PRK08300 64 AMPEFDDIDIVFDATSAGAH--VRHAAK---LREAGIRAIDLTPAAIGPYCVPAVNLDEHL---DAPNVNMVTCGGQATI 135 (302)
T ss_pred hCcCCCCCCEEEECCCHHHH--HHHHHH---HHHcCCeEEECCccccCCcccCcCCHHHHh---cccCCCEEECccHHHH
Confidence 23678999999984432 233333 345677788877643 222332 11211233333
Q ss_pred -----CCCCCCCCeeeEec-------CCCC---CHHHHHHHHHHHHHcC-----CeeEEE
Q 007805 447 -----FSPAHVMPLLEIVR-------TERT---SAQVILDLMTVGKIIK-----KVPVVV 486 (589)
Q Consensus 447 -----~~p~~~~~lveiv~-------~~~t---~~e~~~~~~~l~~~lG-----~~~v~v 486 (589)
..|.....+.||+. ++.| =+|..+.....++.+| |.++++
T Consensus 136 ~~v~Al~~v~~~~~~eIvat~~s~s~g~gtr~nidE~~~~t~~~~~~~~g~~~~kai~~~ 195 (302)
T PRK08300 136 PIVAAVSRVAPVHYAEIVASIASKSAGPGTRANIDEFTETTSRAIEKVGGAARGKAIIIL 195 (302)
T ss_pred HHHHHhcccCcCceeeeeeeehhhccCCcccccHHHHHHHHHHHHHHhcCcccceEEEEe
Confidence 34444456777773 2332 2566666666676654 566666
No 410
>cd01079 NAD_bind_m-THF_DH NAD binding domain of methylene-tetrahydrofolate dehydrogenase. The NAD-binding domain of methylene-tetrahydrofolate dehydrogenase (m-THF DH). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. M-THF DH is a component of an unusual monofunctional enzyme; in eukaryotes, m-THF DH is typically found as part of a multifunctional protein. NADP-dependent m-THF DHs in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofunctional DH, as well as bifunctional DH/cyclodrolase are found. In addition, yeast (S. cerevisiae) also express an monofunctional DH. This family contains only the monofunctional
Probab=95.46 E-value=0.055 Score=50.92 Aligned_cols=88 Identities=14% Similarity=0.124 Sum_probs=57.5
Q ss_pred ceEEEEcC-CCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhccccc--CC----
Q 007805 309 RKVAVIGG-GLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGV--LD---- 381 (589)
Q Consensus 309 ~kI~IIG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~--~~---- 381 (589)
++|.|||- ...|.++|..|.+.|..|+++|.+.-..-. ..+.+. -+.+ .+
T Consensus 63 K~vvVIGrS~iVGkPla~lL~~~~AtVti~~~~~~~~~~-------------~~~~~~----------hs~t~~~~~~~~ 119 (197)
T cd01079 63 KTITIINRSEVVGRPLAALLANDGARVYSVDINGIQVFT-------------RGESIR----------HEKHHVTDEEAM 119 (197)
T ss_pred CEEEEECCCccchHHHHHHHHHCCCEEEEEecCcccccc-------------cccccc----------cccccccchhhH
Confidence 78999996 555999999999999999999876432211 000000 0001 12
Q ss_pred c-cCCCCCCEEEEeccCChH-HHHHHHHHHHHhCCCCcEEEecCCCC
Q 007805 382 Y-SEFKDVDMVIEAVIESVP-LKQKIFSELEKACPPHCILATNTSTI 426 (589)
Q Consensus 382 ~-~~~~~aDlVIeavpe~~~-~k~~v~~~l~~~~~~~~ii~s~ts~~ 426 (589)
+ +.++.||+||.|++-.-- ++. +.+++++++++.....
T Consensus 120 l~~~~~~ADIVIsAvG~~~~~i~~-------d~ik~GavVIDVGi~~ 159 (197)
T cd01079 120 TLDCLSQSDVVITGVPSPNYKVPT-------ELLKDGAICINFASIK 159 (197)
T ss_pred HHHHhhhCCEEEEccCCCCCccCH-------HHcCCCcEEEEcCCCc
Confidence 2 567999999999973221 233 3578999998766543
No 411
>PF02882 THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; InterPro: IPR020631 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF). Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the NAD(P)-binding domain found in these enzymes.; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 1B0A_A 2C2X_B 2C2Y_A 3NGL_C 3NGX_A 4A26_B 1EDZ_A 1EE9_A 3P2O_B 1DIA_A ....
Probab=95.44 E-value=0.033 Score=51.12 Aligned_cols=73 Identities=19% Similarity=0.257 Sum_probs=48.0
Q ss_pred ceEEEEcCC-CCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCccCCCC
Q 007805 309 RKVAVIGGG-LMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKD 387 (589)
Q Consensus 309 ~kI~IIG~G-~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~ 387 (589)
++|.|||-+ ..|.+++..|.++|..|++.+.....++ +.++.
T Consensus 37 k~v~VvGrs~~VG~Pla~lL~~~~atVt~~h~~T~~l~-------------------------------------~~~~~ 79 (160)
T PF02882_consen 37 KKVVVVGRSNIVGKPLAMLLLNKGATVTICHSKTKNLQ-------------------------------------EITRR 79 (160)
T ss_dssp -EEEEE-TTTTTHHHHHHHHHHTT-EEEEE-TTSSSHH-------------------------------------HHHTT
T ss_pred CEEEEECCcCCCChHHHHHHHhCCCeEEeccCCCCccc-------------------------------------ceeee
Confidence 789999976 6899999999999999999987643322 33678
Q ss_pred CCEEEEeccCChHHHHHHHHHHHHhCCCCcEEEecCCC
Q 007805 388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTST 425 (589)
Q Consensus 388 aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~ 425 (589)
||+||.|+.-.--++ .+.+++++++++....
T Consensus 80 ADIVVsa~G~~~~i~-------~~~ik~gavVIDvG~~ 110 (160)
T PF02882_consen 80 ADIVVSAVGKPNLIK-------ADWIKPGAVVIDVGIN 110 (160)
T ss_dssp SSEEEE-SSSTT-B--------GGGS-TTEEEEE--CE
T ss_pred ccEEeeeeccccccc-------cccccCCcEEEecCCc
Confidence 999999996322222 2357899998876554
No 412
>KOG0022 consensus Alcohol dehydrogenase, class III [Secondary metabolites biosynthesis, transport and catabolism]
Probab=95.43 E-value=0.24 Score=49.73 Aligned_cols=41 Identities=22% Similarity=0.267 Sum_probs=37.0
Q ss_pred ceEEEEcCCCCcHHHHHHHHhCCC-eEEEEeCChHHHHHHHH
Q 007805 309 RKVAVIGGGLMGSGIATAHILNNI-YVVLKEVNSEYLLKGIK 349 (589)
Q Consensus 309 ~kI~IIG~G~mG~~iA~~l~~~G~-~V~~~d~~~~~~~~~~~ 349 (589)
..|+|+|+|..|.+.++....+|. +++.+|+|+++.+++.+
T Consensus 194 stvAVfGLG~VGLav~~Gaka~GAsrIIgvDiN~~Kf~~ak~ 235 (375)
T KOG0022|consen 194 STVAVFGLGGVGLAVAMGAKAAGASRIIGVDINPDKFEKAKE 235 (375)
T ss_pred CEEEEEecchHHHHHHHhHHhcCcccEEEEecCHHHHHHHHh
Confidence 469999999999999999998886 89999999999988743
No 413
>PRK00436 argC N-acetyl-gamma-glutamyl-phosphate reductase; Validated
Probab=95.43 E-value=0.043 Score=57.28 Aligned_cols=100 Identities=16% Similarity=0.153 Sum_probs=57.6
Q ss_pred cceEEEEcC-CCCcHHHHHHHHhC-CCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc--c
Q 007805 308 VRKVAVIGG-GLMGSGIATAHILN-NIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY--S 383 (589)
Q Consensus 308 ~~kI~IIG~-G~mG~~iA~~l~~~-G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~--~ 383 (589)
|.||+|||+ |.+|..++..+.++ +++++.+-.+.+..+...+ .... + .+.. .. ..++. .
T Consensus 2 m~kVaIiGAtG~vG~~l~~~L~~~p~~elv~v~~~~~~g~~l~~----~~~~-~-~~~~----------~~-~~~~~~~~ 64 (343)
T PRK00436 2 MIKVGIVGASGYTGGELLRLLLNHPEVEIVAVTSRSSAGKPLSD----VHPH-L-RGLV----------DL-VLEPLDPE 64 (343)
T ss_pred CeEEEEECCCCHHHHHHHHHHHcCCCceEEEEECccccCcchHH----hCcc-c-cccc----------Cc-eeecCCHH
Confidence 468999997 99999999999886 6776554333222111111 0000 0 0000 00 11112 2
Q ss_pred CCCCCCEEEEeccCChHHHHHHHHHHHHhCCCCcEEEecCCCCCHH
Q 007805 384 EFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLN 429 (589)
Q Consensus 384 ~~~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~ 429 (589)
...++|+|+.|+|.... .++..++ ...++.|+++++....+
T Consensus 65 ~~~~vD~Vf~alP~~~~--~~~v~~a---~~aG~~VID~S~~fR~~ 105 (343)
T PRK00436 65 ILAGADVVFLALPHGVS--MDLAPQL---LEAGVKVIDLSADFRLK 105 (343)
T ss_pred HhcCCCEEEECCCcHHH--HHHHHHH---HhCCCEEEECCcccCCC
Confidence 35689999999996543 3443443 34678889999877663
No 414
>COG0169 AroE Shikimate 5-dehydrogenase [Amino acid transport and metabolism]
Probab=95.32 E-value=0.043 Score=55.26 Aligned_cols=42 Identities=14% Similarity=0.129 Sum_probs=37.7
Q ss_pred ceEEEEcCCCCcHHHHHHHHhCCC-eEEEEeCChHHHHHHHHH
Q 007805 309 RKVAVIGGGLMGSGIATAHILNNI-YVVLKEVNSEYLLKGIKT 350 (589)
Q Consensus 309 ~kI~IIG~G~mG~~iA~~l~~~G~-~V~~~d~~~~~~~~~~~~ 350 (589)
++|.|+|+|-++.+++..|++.|. +|++++|+.++.++..+.
T Consensus 127 ~~vlilGAGGAarAv~~aL~~~g~~~i~V~NRt~~ra~~La~~ 169 (283)
T COG0169 127 KRVLILGAGGAARAVAFALAEAGAKRITVVNRTRERAEELADL 169 (283)
T ss_pred CEEEEECCcHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHH
Confidence 789999999999999999999995 899999999998776443
No 415
>PLN02820 3-methylcrotonyl-CoA carboxylase, beta chain
Probab=95.32 E-value=0.54 Score=52.14 Aligned_cols=151 Identities=17% Similarity=0.144 Sum_probs=87.1
Q ss_pred EEeCCCC--CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCCcCCCCchhhhhccCCCcccccchhHHHHHHHHHH
Q 007805 18 ITLINPP--VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIE 95 (589)
Q Consensus 18 i~l~~p~--~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 95 (589)
+.-|.+. .-+++....+.+.++++.+.+. .+-+|.|.-.|+.+-.+ ....+. ....+.+.+ ... ..+.
T Consensus 133 v~a~D~tv~GGs~g~~~~~Ki~r~~elA~~~-~lPlV~l~DSgGarl~~-q~e~~~------~~~~~g~if-~~~-~~ls 202 (569)
T PLN02820 133 FVANDPTVKGGTYYPITVKKHLRAQEIAAQC-RLPCIYLVDSGGANLPR-QAEVFP------DRDHFGRIF-YNQ-ARMS 202 (569)
T ss_pred EEEECCCccCCCCCHHHHHHHHHHHHHHHHc-CCCEEEEEeCCCcCCcc-cccccc------hHhHHHHHH-HHH-HHHh
Confidence 3334453 4899999999999999998765 35566665443332111 000000 000111111 111 2244
Q ss_pred hCCCcEEEEeCCcccchhhHHhhhcCEEEEeCC-ceEeccccccCCCCChhhhhhHhhhcCHHHHHHHHHcCCCCCHHHH
Q 007805 96 DCKKPIVAAVEGLALGGGLELAMGCHARIAAPK-TQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEG 174 (589)
Q Consensus 96 ~~~kp~iaav~G~a~GgG~~lala~D~~ia~~~-a~~~~pe~~~Gl~p~~g~~~~l~~~~G~~~a~~l~ltg~~~~a~~A 174 (589)
....|.|++|-|.|.|||......||++|++++ +.+.+ + |+... + ..+|+.+++++.
T Consensus 203 ~~~VP~Isvv~G~~~gGgAy~~a~~D~vim~~~~a~i~~-----------a---------GP~vV-~-~~~Ge~v~~eeL 260 (569)
T PLN02820 203 SAGIPQIALVLGSCTAGGAYVPAMADESVIVKGNGTIFL-----------A---------GPPLV-K-AATGEEVSAEDL 260 (569)
T ss_pred CCCCCEEEEEeCCCChHHHHHHHhCCceEEecCCcEEEe-----------c---------CHHHH-H-hhcCcccCHHHh
Confidence 567999999999999999999999999999864 54443 1 11111 1 134555665554
Q ss_pred -----H--HcCCcceecCch-HHHHHHHHHHHHH
Q 007805 175 -----W--KLGLIDAVVTSE-ELLKVSRLWALDI 200 (589)
Q Consensus 175 -----~--~~Glv~~vv~~~-~l~~~a~~~a~~l 200 (589)
+ .-|.+|.+++++ +..+.++++..-+
T Consensus 261 GGa~~h~~~sGv~d~~~~de~~a~~~~R~lls~L 294 (569)
T PLN02820 261 GGADVHCKVSGVSDHFAQDELHALAIGRNIVKNL 294 (569)
T ss_pred CCHHHhcccccccccccCchHHHHHHHHHHHHhc
Confidence 2 368888888665 2333444444333
No 416
>PRK02318 mannitol-1-phosphate 5-dehydrogenase; Provisional
Probab=95.30 E-value=0.018 Score=61.12 Aligned_cols=39 Identities=26% Similarity=0.296 Sum_probs=33.4
Q ss_pred ceEEEEcCCCCcHHH-HHHHHhCCCeEEEEeCChHHHHHH
Q 007805 309 RKVAVIGGGLMGSGI-ATAHILNNIYVVLKEVNSEYLLKG 347 (589)
Q Consensus 309 ~kI~IIG~G~mG~~i-A~~l~~~G~~V~~~d~~~~~~~~~ 347 (589)
+||.++|+|.||++. ...|.+.|++|+++|++++.++..
T Consensus 1 mki~~~GaGa~gr~~~~~~l~~~g~~V~~vd~~~~~v~aL 40 (381)
T PRK02318 1 MKAVHFGAGNIGRGFIGKLLADNGFEVTFVDVNQELIDAL 40 (381)
T ss_pred CceEEECCchhhHHHHHHHHHhCCCeEEEEECCHHHHHHH
Confidence 479999999999855 778888999999999988866664
No 417
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=95.29 E-value=0.026 Score=45.27 Aligned_cols=35 Identities=37% Similarity=0.470 Sum_probs=32.6
Q ss_pred eEEEEcCCCCcHHHHHHHHhCCCeEEEEeCChHHH
Q 007805 310 KVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYL 344 (589)
Q Consensus 310 kI~IIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~ 344 (589)
||.|||+|..|.-+|..++..|.+|+++++++.-.
T Consensus 1 ~vvViGgG~ig~E~A~~l~~~g~~vtli~~~~~~~ 35 (80)
T PF00070_consen 1 RVVVIGGGFIGIELAEALAELGKEVTLIERSDRLL 35 (80)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSEEEEEESSSSSS
T ss_pred CEEEECcCHHHHHHHHHHHHhCcEEEEEeccchhh
Confidence 68999999999999999999999999999987755
No 418
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=95.28 E-value=0.039 Score=46.74 Aligned_cols=72 Identities=19% Similarity=0.383 Sum_probs=49.1
Q ss_pred ceEEEEcCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccC-Cc-cCCC
Q 007805 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVL-DY-SEFK 386 (589)
Q Consensus 309 ~kI~IIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~-~~-~~~~ 386 (589)
++|.|||.|.+|..=+..|++.|.+|+++..+.+..+ + .++... .+ +.+.
T Consensus 8 ~~vlVvGgG~va~~k~~~Ll~~gA~v~vis~~~~~~~----------------~------------~i~~~~~~~~~~l~ 59 (103)
T PF13241_consen 8 KRVLVVGGGPVAARKARLLLEAGAKVTVISPEIEFSE----------------G------------LIQLIRREFEEDLD 59 (103)
T ss_dssp -EEEEEEESHHHHHHHHHHCCCTBEEEEEESSEHHHH----------------T------------SCEEEESS-GGGCT
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCEEEEECCchhhhh----------------h------------HHHHHhhhHHHHHh
Confidence 6899999999999999999999999999998861111 1 111111 11 5588
Q ss_pred CCCEEEEeccCChHHHHHHHHHH
Q 007805 387 DVDMVIEAVIESVPLKQKIFSEL 409 (589)
Q Consensus 387 ~aDlVIeavpe~~~~k~~v~~~l 409 (589)
++|+||.|.. +..+.+.+....
T Consensus 60 ~~~lV~~at~-d~~~n~~i~~~a 81 (103)
T PF13241_consen 60 GADLVFAATD-DPELNEAIYADA 81 (103)
T ss_dssp TESEEEE-SS--HHHHHHHHHHH
T ss_pred hheEEEecCC-CHHHHHHHHHHH
Confidence 9999997764 566555555543
No 419
>PRK10792 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=95.25 E-value=0.04 Score=55.28 Aligned_cols=71 Identities=15% Similarity=0.202 Sum_probs=53.1
Q ss_pred ceEEEEcCCC-CcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCccCCCC
Q 007805 309 RKVAVIGGGL-MGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKD 387 (589)
Q Consensus 309 ~kI~IIG~G~-mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~ 387 (589)
++|.|||-|. .|.++|..|.+.|..|+++......++ +.++.
T Consensus 160 k~vvViGrs~iVG~Pla~lL~~~~atVtv~hs~T~~l~-------------------------------------~~~~~ 202 (285)
T PRK10792 160 LNAVVVGASNIVGRPMSLELLLAGCTVTVCHRFTKNLR-------------------------------------HHVRN 202 (285)
T ss_pred CEEEEECCCcccHHHHHHHHHHCCCeEEEEECCCCCHH-------------------------------------HHHhh
Confidence 6899999877 899999999999999999986432211 34688
Q ss_pred CCEEEEeccCChHHHHHHHHHHHHhCCCCcEEEecC
Q 007805 388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNT 423 (589)
Q Consensus 388 aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~t 423 (589)
||+||.|+.- + .++. .+.+++++++++..
T Consensus 203 ADIvi~avG~-p----~~v~--~~~vk~gavVIDvG 231 (285)
T PRK10792 203 ADLLVVAVGK-P----GFIP--GEWIKPGAIVIDVG 231 (285)
T ss_pred CCEEEEcCCC-c----cccc--HHHcCCCcEEEEcc
Confidence 9999999941 1 1222 15688999988754
No 420
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.22 E-value=0.061 Score=58.99 Aligned_cols=48 Identities=21% Similarity=0.189 Sum_probs=39.0
Q ss_pred CCCCCCCCCCCCCccceEEEEcCCCCcHHHHHHHHhCCCeEEEEeCChH
Q 007805 294 KVPNVTDIGLKPRGVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSE 342 (589)
Q Consensus 294 ~~~~~~~~~~~~~~~~kI~IIG~G~mG~~iA~~l~~~G~~V~~~d~~~~ 342 (589)
+.|+...++.. ..-++|.|||+|..|.++|..|++.|++|+++|.++.
T Consensus 3 ~~~~~~~~~~~-~~~~~v~viG~G~~G~~~A~~L~~~G~~V~~~d~~~~ 50 (480)
T PRK01438 3 RPPGLTSWHSD-WQGLRVVVAGLGVSGFAAADALLELGARVTVVDDGDD 50 (480)
T ss_pred cccchhhcccC-cCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCch
Confidence 45566566653 3457899999999999999999999999999997653
No 421
>PLN03075 nicotianamine synthase; Provisional
Probab=95.22 E-value=0.16 Score=51.31 Aligned_cols=128 Identities=15% Similarity=0.083 Sum_probs=77.2
Q ss_pred cceEEEEcCCCCcHHHHHHHHhC--CCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhccccc-CCc--
Q 007805 308 VRKVAVIGGGLMGSGIATAHILN--NIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGV-LDY-- 382 (589)
Q Consensus 308 ~~kI~IIG~G~mG~~iA~~l~~~--G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~-~~~-- 382 (589)
.++|+.||+|..|-+-...++.. +-.++.+|++++.++.+++.+... .| +. .++++. .|.
T Consensus 124 p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~------~g-L~--------~rV~F~~~Da~~ 188 (296)
T PLN03075 124 PTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSD------PD-LS--------KRMFFHTADVMD 188 (296)
T ss_pred CCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhc------cC-cc--------CCcEEEECchhh
Confidence 47899999999776554444333 347999999999999886543210 11 00 223332 111
Q ss_pred --cCCCCCCEEEEeccC--ChHHHHHHHHHHHHhCCCCcEEEecCCCCCHHHHhcc-----cCCCCcEEEecCCCCC
Q 007805 383 --SEFKDVDMVIEAVIE--SVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEK-----TSSQDRIIGAHFFSPA 450 (589)
Q Consensus 383 --~~~~~aDlVIeavpe--~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~~~~~~-----~~~~~r~ig~h~~~p~ 450 (589)
....+.|+|+..+-= +..-|.++++.+.+.++|+.+++.-+..-.-.-+-.. ...-+.....||.+++
T Consensus 189 ~~~~l~~FDlVF~~ALi~~dk~~k~~vL~~l~~~LkPGG~Lvlr~~~G~r~~LYp~v~~~~~~gf~~~~~~~P~~~v 265 (296)
T PLN03075 189 VTESLKEYDVVFLAALVGMDKEEKVKVIEHLGKHMAPGALLMLRSAHGARAFLYPVVDPCDLRGFEVLSVFHPTDEV 265 (296)
T ss_pred cccccCCcCEEEEecccccccccHHHHHHHHHHhcCCCcEEEEecccchHhhcCCCCChhhCCCeEEEEEECCCCCc
Confidence 235688999988521 2256789999999999999988754432111111111 1122346667887764
No 422
>PRK14191 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=95.16 E-value=0.056 Score=54.26 Aligned_cols=72 Identities=14% Similarity=0.169 Sum_probs=53.2
Q ss_pred ceEEEEcCC-CCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCccCCCC
Q 007805 309 RKVAVIGGG-LMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKD 387 (589)
Q Consensus 309 ~kI~IIG~G-~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~ 387 (589)
++|.|||-| ..|.++|..|.+.|..|+++......+. +.++.
T Consensus 158 k~vvVvGrs~~VG~Pla~lL~~~gAtVtv~hs~t~~l~-------------------------------------~~~~~ 200 (285)
T PRK14191 158 KDVVIIGASNIVGKPLAMLMLNAGASVSVCHILTKDLS-------------------------------------FYTQN 200 (285)
T ss_pred CEEEEECCCchhHHHHHHHHHHCCCEEEEEeCCcHHHH-------------------------------------HHHHh
Confidence 689999998 8899999999999999999865432221 33678
Q ss_pred CCEEEEeccCChHHHHHHHHHHHHhCCCCcEEEecCC
Q 007805 388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTS 424 (589)
Q Consensus 388 aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts 424 (589)
||+||.|+.-.- ++. .+.+++++++++...
T Consensus 201 ADIvV~AvG~p~-----~i~--~~~vk~GavVIDvGi 230 (285)
T PRK14191 201 ADIVCVGVGKPD-----LIK--ASMVKKGAVVVDIGI 230 (285)
T ss_pred CCEEEEecCCCC-----cCC--HHHcCCCcEEEEeec
Confidence 999999996222 222 235689998876543
No 423
>COG1648 CysG Siroheme synthase (precorrin-2 oxidase/ferrochelatase domain) [Coenzyme metabolism]
Probab=95.15 E-value=0.44 Score=45.88 Aligned_cols=130 Identities=23% Similarity=0.240 Sum_probs=79.5
Q ss_pred ceEEEEcCCCCcHHHHHHHHhCCCeEEEEeCCh-HHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCccCCCC
Q 007805 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNS-EYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKD 387 (589)
Q Consensus 309 ~kI~IIG~G~mG~~iA~~l~~~G~~V~~~d~~~-~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~ 387 (589)
++|.|||.|..|..=+..|++.|-+|+++..+. +.+.. +.+.+.+.. +.-.-+.+.+.+
T Consensus 13 k~VlvvGgG~va~rKa~~ll~~ga~v~Vvs~~~~~el~~-----------~~~~~~i~~---------~~~~~~~~~~~~ 72 (210)
T COG1648 13 KKVLVVGGGSVALRKARLLLKAGADVTVVSPEFEPELKA-----------LIEEGKIKW---------IEREFDAEDLDD 72 (210)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCEEEEEcCCccHHHHH-----------HHHhcCcch---------hhcccChhhhcC
Confidence 689999999999999999999999999998775 22222 233333221 111122255667
Q ss_pred CCEEEEeccCChHHHHHHHHHHHHhCCCCcEEEecCCCCCHHHHhcccCCCCcEEEecCCCCC--CCCCeeeEecCCCCC
Q 007805 388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPA--HVMPLLEIVRTERTS 465 (589)
Q Consensus 388 aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~~~~~~~~~~~r~ig~h~~~p~--~~~~lveiv~~~~t~ 465 (589)
+++||.|++ |.++.+.++....++ .+++ |... .|.. ..|+.|. ...++..-+.+.+.+
T Consensus 73 ~~lviaAt~-d~~ln~~i~~~a~~~----~i~v-Nv~D-----------~p~~---~~f~~Pa~~~r~~l~iaIsT~G~s 132 (210)
T COG1648 73 AFLVIAATD-DEELNERIAKAARER----RILV-NVVD-----------DPEL---CDFIFPAIVDRGPLQIAISTGGKS 132 (210)
T ss_pred ceEEEEeCC-CHHHHHHHHHHHHHh----CCce-eccC-----------Cccc---CceecceeeccCCeEEEEECCCCC
Confidence 999999986 666666666654443 3332 2211 1111 2333333 344566667777777
Q ss_pred HHHHHHHHHHHHH
Q 007805 466 AQVILDLMTVGKI 478 (589)
Q Consensus 466 ~e~~~~~~~l~~~ 478 (589)
|-....+++-++.
T Consensus 133 P~la~~ir~~Ie~ 145 (210)
T COG1648 133 PVLARLLREKIEA 145 (210)
T ss_pred hHHHHHHHHHHHH
Confidence 7776666665554
No 424
>cd01484 E1-2_like Ubiquitin activating enzyme (E1), repeat 2-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homologou
Probab=95.10 E-value=0.086 Score=51.70 Aligned_cols=160 Identities=13% Similarity=0.137 Sum_probs=81.0
Q ss_pred eEEEEcCCCCcHHHHHHHHhCCC-eEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhh-------------c
Q 007805 310 KVAVIGGGLMGSGIATAHILNNI-YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALK-------------M 375 (589)
Q Consensus 310 kI~IIG~G~mG~~iA~~l~~~G~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-------------~ 375 (589)
||.|||+|-.|+.++..|+..|+ +++++|.+.=........ .+-..-.-|+-..+.+...+. +
T Consensus 1 kVlvvG~GGlG~eilk~La~~Gvg~i~ivD~D~Ve~sNLnRQ---flf~~~dvGk~Ka~va~~~l~~~np~v~i~~~~~~ 77 (234)
T cd01484 1 KVLLVGAGGIGCELLKNLALMGFGQIHVIDMDTIDVSNLNRQ---FLFRPKDIGRPKSEVAAEAVNDRNPNCKVVPYQNK 77 (234)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCEEcchhhccc---cCCChhhCChHHHHHHHHHHHHHCCCCEEEEEecc
Confidence 58999999999999999999998 788888764221111000 000000011111111111111 1
Q ss_pred ccccCCc--cCCCCCCEEEEeccCChHHHHHHHHHHHHhCCCCcEEE-ecCCCCCHHHHhcccCCCCcEEEecCCCCCCC
Q 007805 376 LKGVLDY--SEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILA-TNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHV 452 (589)
Q Consensus 376 i~~~~~~--~~~~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~-s~ts~~~~~~~~~~~~~~~r~ig~h~~~p~~~ 452 (589)
+....+. +-+++.|+||.|+- +.+. +..+.+..-.. +..++ +.+.+..- ...-..+........++..+...
T Consensus 78 i~~~~~~~~~f~~~~DvVi~a~D-n~~a-R~~ln~~c~~~--~iplI~~g~~G~~G-~v~vi~p~~t~c~~C~~~~~~~~ 152 (234)
T cd01484 78 VGPEQDFNDTFFEQFHIIVNALD-NIIA-RRYVNGMLIFL--IVPLIESGTEGFKG-NAQVILPGMTECIECTLYPPQKN 152 (234)
T ss_pred CChhhhchHHHHhCCCEEEECCC-CHHH-HHHHHHHHHHc--CCCEEEEcccCCce-EEEEEcCCCCCCcccCCCCCCCC
Confidence 1100111 34688999999984 4443 34444433222 23333 33333221 11111121112233344444445
Q ss_pred CCeeeEecCCCCCHHHHHHHHHHHH
Q 007805 453 MPLLEIVRTERTSAQVILDLMTVGK 477 (589)
Q Consensus 453 ~~lveiv~~~~t~~e~~~~~~~l~~ 477 (589)
.|...+-..|.+.+..+++++.++.
T Consensus 153 ~p~Cti~~~P~~~~hci~~a~~~~~ 177 (234)
T cd01484 153 FPMCTIASMPRLPEHCIEWARMLQW 177 (234)
T ss_pred CCccccCCCCCCchHHHHHHHHHHh
Confidence 5667777788888888999988875
No 425
>PRK12409 D-amino acid dehydrogenase small subunit; Provisional
Probab=95.08 E-value=0.018 Score=61.74 Aligned_cols=34 Identities=26% Similarity=0.346 Sum_probs=31.9
Q ss_pred cceEEEEcCCCCcHHHHHHHHhCCCeEEEEeCCh
Q 007805 308 VRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNS 341 (589)
Q Consensus 308 ~~kI~IIG~G~mG~~iA~~l~~~G~~V~~~d~~~ 341 (589)
|.+|.|||+|.+|.++|..|++.|++|+++|+++
T Consensus 1 ~~~vvIIGaG~~G~~~A~~La~~g~~V~vle~~~ 34 (410)
T PRK12409 1 MSHIAVIGAGITGVTTAYALAQRGYQVTVFDRHR 34 (410)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 4689999999999999999999999999999875
No 426
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=95.06 E-value=0.12 Score=58.55 Aligned_cols=95 Identities=14% Similarity=0.124 Sum_probs=61.3
Q ss_pred cceEEEEcCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc--cCC
Q 007805 308 VRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY--SEF 385 (589)
Q Consensus 308 ~~kI~IIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~--~~~ 385 (589)
-++|-|+|.|.+|..+|..|.+.|++++++|.|+++++.+.+. ...+-.|..+.. +-+ ..+
T Consensus 400 ~~~vII~G~Gr~G~~va~~L~~~g~~vvvID~d~~~v~~~~~~-----g~~v~~GDat~~------------~~L~~agi 462 (621)
T PRK03562 400 QPRVIIAGFGRFGQIVGRLLLSSGVKMTVLDHDPDHIETLRKF-----GMKVFYGDATRM------------DLLESAGA 462 (621)
T ss_pred cCcEEEEecChHHHHHHHHHHhCCCCEEEEECCHHHHHHHHhc-----CCeEEEEeCCCH------------HHHHhcCC
Confidence 3689999999999999999999999999999999998876321 000011111100 001 246
Q ss_pred CCCCEEEEeccCChHHHHHHHHHHHHhCCCCcEEE
Q 007805 386 KDVDMVIEAVIESVPLKQKIFSELEKACPPHCILA 420 (589)
Q Consensus 386 ~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~ 420 (589)
++||+||.++.++. ....+...+..+.++-.|++
T Consensus 463 ~~A~~vvv~~~d~~-~n~~i~~~ar~~~p~~~iia 496 (621)
T PRK03562 463 AKAEVLINAIDDPQ-TSLQLVELVKEHFPHLQIIA 496 (621)
T ss_pred CcCCEEEEEeCCHH-HHHHHHHHHHHhCCCCeEEE
Confidence 79999999996443 33344444444444444554
No 427
>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins. This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.
Probab=94.97 E-value=0.05 Score=49.02 Aligned_cols=32 Identities=25% Similarity=0.404 Sum_probs=29.4
Q ss_pred eEEEEcCCCCcHHHHHHHHhCCC-eEEEEeCCh
Q 007805 310 KVAVIGGGLMGSGIATAHILNNI-YVVLKEVNS 341 (589)
Q Consensus 310 kI~IIG~G~mG~~iA~~l~~~G~-~V~~~d~~~ 341 (589)
||.|||+|.+|+.++..|+..|+ +++++|.+.
T Consensus 1 ~VliiG~GglGs~ia~~L~~~Gv~~i~ivD~d~ 33 (143)
T cd01483 1 RVLLVGLGGLGSEIALNLARSGVGKITLIDFDT 33 (143)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEEcCCC
Confidence 58999999999999999999998 799999773
No 428
>PRK05562 precorrin-2 dehydrogenase; Provisional
Probab=94.91 E-value=0.18 Score=48.86 Aligned_cols=127 Identities=21% Similarity=0.176 Sum_probs=74.2
Q ss_pred ceEEEEcCCCCcHHHHHHHHhCCCeEEEEeCChH-HHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccC---CccC
Q 007805 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSE-YLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVL---DYSE 384 (589)
Q Consensus 309 ~kI~IIG~G~mG~~iA~~l~~~G~~V~~~d~~~~-~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~---~~~~ 384 (589)
++|.|||.|.++..=+..|++.|.+|+++..+-. .+.. +.+.|.+ ++.. +.+.
T Consensus 26 ~~VLVVGGG~VA~RK~~~Ll~~gA~VtVVap~i~~el~~-----------l~~~~~i------------~~~~r~~~~~d 82 (223)
T PRK05562 26 IKVLIIGGGKAAFIKGKTFLKKGCYVYILSKKFSKEFLD-----------LKKYGNL------------KLIKGNYDKEF 82 (223)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCCCHHHHH-----------HHhCCCE------------EEEeCCCChHH
Confidence 5899999999999989999999999999965532 1111 1223322 2211 1245
Q ss_pred CCCCCEEEEeccCChHHHHHHHHHHHHhCCCCcEEEecCCCCCHHHHhcccCCCCcEEEecCCCCC--CCCCeeeEecCC
Q 007805 385 FKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPA--HVMPLLEIVRTE 462 (589)
Q Consensus 385 ~~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~~~~~~~~~~~r~ig~h~~~p~--~~~~lveiv~~~ 462 (589)
+.++++||.|+. |.++-+.+.. .++...+++.+...... ..|+.|. ...+++.-+.+.
T Consensus 83 l~g~~LViaATd-D~~vN~~I~~----~a~~~~~lvn~vd~p~~---------------~dFi~PAiv~rg~l~IaIST~ 142 (223)
T PRK05562 83 IKDKHLIVIATD-DEKLNNKIRK----HCDRLYKLYIDCSDYKK---------------GLCIIPYQRSTKNFVFALNTK 142 (223)
T ss_pred hCCCcEEEECCC-CHHHHHHHHH----HHHHcCCeEEEcCCccc---------------CeEEeeeEEecCCEEEEEECC
Confidence 789999999974 6655555444 34443334333221111 1233332 334555566666
Q ss_pred CCCHHHHHHHHHHHHH
Q 007805 463 RTSAQVILDLMTVGKI 478 (589)
Q Consensus 463 ~t~~e~~~~~~~l~~~ 478 (589)
+.+|.....++.-++.
T Consensus 143 G~sP~lar~lR~~ie~ 158 (223)
T PRK05562 143 GGSPKTSVFIGEKVKN 158 (223)
T ss_pred CcCcHHHHHHHHHHHH
Confidence 7777766666655443
No 429
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=94.90 E-value=0.098 Score=54.80 Aligned_cols=40 Identities=23% Similarity=0.232 Sum_probs=34.9
Q ss_pred eEEEEcCCCCcHHHHHHHHhCCC-eEEEEeCChHHHHHHHH
Q 007805 310 KVAVIGGGLMGSGIATAHILNNI-YVVLKEVNSEYLLKGIK 349 (589)
Q Consensus 310 kI~IIG~G~mG~~iA~~l~~~G~-~V~~~d~~~~~~~~~~~ 349 (589)
+|.|+|+|.||.-.+..+...|. +|++.|+++++++.+.+
T Consensus 171 ~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~Rl~~A~~ 211 (350)
T COG1063 171 TVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPERLELAKE 211 (350)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHH
Confidence 79999999999998877777785 78888999999998744
No 430
>PRK06153 hypothetical protein; Provisional
Probab=94.81 E-value=0.052 Score=56.59 Aligned_cols=32 Identities=25% Similarity=0.267 Sum_probs=29.6
Q ss_pred ceEEEEcCCCCcHHHHHHHHhCCC-eEEEEeCC
Q 007805 309 RKVAVIGGGLMGSGIATAHILNNI-YVVLKEVN 340 (589)
Q Consensus 309 ~kI~IIG~G~mG~~iA~~l~~~G~-~V~~~d~~ 340 (589)
.+|+|||+|-.|+.++..|++.|. +++++|.+
T Consensus 177 ~~VaIVG~GG~GS~Va~~LAR~GVgeI~LVD~D 209 (393)
T PRK06153 177 QRIAIIGLGGTGSYILDLVAKTPVREIHLFDGD 209 (393)
T ss_pred CcEEEEcCCccHHHHHHHHHHcCCCEEEEECCC
Confidence 479999999999999999999998 89999876
No 431
>TIGR03215 ac_ald_DH_ac acetaldehyde dehydrogenase (acetylating). Members of this protein family are acetaldehyde dehydrogenase (acetylating), EC 1.2.1.10. This enzyme oxidizes acetaldehyde, using NAD(+), and attaches coenzyme A (CoA), yielding acetyl-CoA. It occurs as a late step in the meta-cleavage pathways of a variety of compounds, including catechol, biphenyl, toluene, salicylate, etc.
Probab=94.79 E-value=0.085 Score=53.22 Aligned_cols=89 Identities=18% Similarity=0.189 Sum_probs=53.1
Q ss_pred eEEEEcCCCCcHHHHHHHHh-CCCeEE-EEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCcc-CC-
Q 007805 310 KVAVIGGGLMGSGIATAHIL-NNIYVV-LKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYS-EF- 385 (589)
Q Consensus 310 kI~IIG~G~mG~~iA~~l~~-~G~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~-~~- 385 (589)
||+|||+|.||...+..+.+ .++++. ++|+++++...... .+.| .-...++++ .+
T Consensus 3 rVAIIG~G~IG~~h~~~ll~~~~~elvaV~d~d~es~~la~A---------~~~G------------i~~~~~~~e~ll~ 61 (285)
T TIGR03215 3 KVAIIGSGNIGTDLMYKLLRSEHLEMVAMVGIDPESDGLARA---------RELG------------VKTSAEGVDGLLA 61 (285)
T ss_pred EEEEEeCcHHHHHHHHHHHhCCCcEEEEEEeCCcccHHHHHH---------HHCC------------CCEEECCHHHHhc
Confidence 79999999999988777664 466765 67998876332111 1112 111223332 22
Q ss_pred -CCCCEEEEeccCChHHHHHHHHHHHHhCCCCcEEEecCC
Q 007805 386 -KDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTS 424 (589)
Q Consensus 386 -~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts 424 (589)
.+.|+|++|+|..... ++. ...+..++.+++.++
T Consensus 62 ~~dIDaV~iaTp~~~H~--e~a---~~al~aGk~VIdekP 96 (285)
T TIGR03215 62 NPDIDIVFDATSAKAHA--RHA---RLLAELGKIVIDLTP 96 (285)
T ss_pred CCCCCEEEECCCcHHHH--HHH---HHHHHcCCEEEECCc
Confidence 4689999999965542 222 223445666666654
No 432
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=94.78 E-value=0.1 Score=44.35 Aligned_cols=95 Identities=16% Similarity=0.154 Sum_probs=63.1
Q ss_pred ceEEEEcCCCCcHHHHHHHHh--CCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccc-cCCc---
Q 007805 309 RKVAVIGGGLMGSGIATAHIL--NNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKG-VLDY--- 382 (589)
Q Consensus 309 ~kI~IIG~G~mG~~iA~~l~~--~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~-~~~~--- 382 (589)
.+|.-||+|+ +.++..+++ .|.+|+.+|.+++.++.+.++... .+. ..++++ ..|.
T Consensus 3 ~~vLDlGcG~--G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~-------~~~---------~~~i~~~~~d~~~~ 64 (112)
T PF12847_consen 3 GRVLDLGCGT--GRLSIALARLFPGARVVGVDISPEMLEIARERAAE-------EGL---------SDRITFVQGDAEFD 64 (112)
T ss_dssp CEEEEETTTT--SHHHHHHHHHHTTSEEEEEESSHHHHHHHHHHHHH-------TTT---------TTTEEEEESCCHGG
T ss_pred CEEEEEcCcC--CHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHh-------cCC---------CCCeEEEECccccC
Confidence 5789999998 445555565 899999999999999998765411 110 022222 1122
Q ss_pred -cCCCCCCEEEEec-----cCChHHHHHHHHHHHHhCCCCcEEEe
Q 007805 383 -SEFKDVDMVIEAV-----IESVPLKQKIFSELEKACPPHCILAT 421 (589)
Q Consensus 383 -~~~~~aDlVIeav-----pe~~~~k~~v~~~l~~~~~~~~ii~s 421 (589)
+.....|+|+..- .-..+..+.+++++.+.++|+.+++-
T Consensus 65 ~~~~~~~D~v~~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~lvi 109 (112)
T PF12847_consen 65 PDFLEPFDLVICSGFTLHFLLPLDERRRVLERIRRLLKPGGRLVI 109 (112)
T ss_dssp TTTSSCEEEEEECSGSGGGCCHHHHHHHHHHHHHHHEEEEEEEEE
T ss_pred cccCCCCCEEEECCCccccccchhHHHHHHHHHHHhcCCCcEEEE
Confidence 3446789999866 11224567888999999999876653
No 433
>PRK12548 shikimate 5-dehydrogenase; Provisional
Probab=94.76 E-value=0.038 Score=56.23 Aligned_cols=34 Identities=21% Similarity=0.419 Sum_probs=31.1
Q ss_pred ceEEEEcCCCCcHHHHHHHHhCCCe-EEEEeCChH
Q 007805 309 RKVAVIGGGLMGSGIATAHILNNIY-VVLKEVNSE 342 (589)
Q Consensus 309 ~kI~IIG~G~mG~~iA~~l~~~G~~-V~~~d~~~~ 342 (589)
+++.|+|+|-+|.+++..|+..|.. |++++|+++
T Consensus 127 k~vlI~GAGGagrAia~~La~~G~~~V~I~~R~~~ 161 (289)
T PRK12548 127 KKLTVIGAGGAATAIQVQCALDGAKEITIFNIKDD 161 (289)
T ss_pred CEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCch
Confidence 5789999999999999999999986 999999973
No 434
>PRK14027 quinate/shikimate dehydrogenase; Provisional
Probab=94.75 E-value=0.056 Score=54.73 Aligned_cols=41 Identities=15% Similarity=0.268 Sum_probs=36.2
Q ss_pred ceEEEEcCCCCcHHHHHHHHhCCC-eEEEEeCChHHHHHHHH
Q 007805 309 RKVAVIGGGLMGSGIATAHILNNI-YVVLKEVNSEYLLKGIK 349 (589)
Q Consensus 309 ~kI~IIG~G~mG~~iA~~l~~~G~-~V~~~d~~~~~~~~~~~ 349 (589)
++|.|+|+|-.+++++..|++.|. +|+++||++++.+...+
T Consensus 128 k~vlilGaGGaarAi~~aL~~~g~~~i~i~nR~~~ka~~La~ 169 (283)
T PRK14027 128 DSVVQVGAGGVGNAVAYALVTHGVQKLQVADLDTSRAQALAD 169 (283)
T ss_pred CeEEEECCcHHHHHHHHHHHHCCCCEEEEEcCCHHHHHHHHH
Confidence 679999999999999999999997 79999999988776533
No 435
>PRK14177 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=94.74 E-value=0.056 Score=54.16 Aligned_cols=73 Identities=19% Similarity=0.236 Sum_probs=54.1
Q ss_pred ceEEEEcC-CCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCccCCCC
Q 007805 309 RKVAVIGG-GLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKD 387 (589)
Q Consensus 309 ~kI~IIG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~ 387 (589)
++|.|||- ...|.++|..|.+.|..|++++.....++ +.++.
T Consensus 160 k~vvViGrS~iVGkPla~lL~~~~atVt~chs~T~~l~-------------------------------------~~~~~ 202 (284)
T PRK14177 160 KNAVVVGRSPILGKPMAMLLTEMNATVTLCHSKTQNLP-------------------------------------SIVRQ 202 (284)
T ss_pred CEEEEECCCCcchHHHHHHHHHCCCEEEEeCCCCCCHH-------------------------------------HHHhh
Confidence 68999996 66699999999999999999884422221 33678
Q ss_pred CCEEEEeccCChHHHHHHHHHHHHhCCCCcEEEecCCC
Q 007805 388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTST 425 (589)
Q Consensus 388 aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~ 425 (589)
||+||.|+. +..++. .+.+++++++++....
T Consensus 203 ADIvIsAvG-----k~~~i~--~~~ik~gavVIDvGin 233 (284)
T PRK14177 203 ADIIVGAVG-----KPEFIK--ADWISEGAVLLDAGYN 233 (284)
T ss_pred CCEEEEeCC-----CcCccC--HHHcCCCCEEEEecCc
Confidence 999999996 223333 3568899999876543
No 436
>PRK14178 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=94.72 E-value=0.1 Score=52.29 Aligned_cols=73 Identities=15% Similarity=0.236 Sum_probs=54.9
Q ss_pred ceEEEEcCC-CCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCccCCCC
Q 007805 309 RKVAVIGGG-LMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKD 387 (589)
Q Consensus 309 ~kI~IIG~G-~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~ 387 (589)
++|.|||-+ ..|.++|..+...|..|+.+..+...+. +.+++
T Consensus 153 k~V~ViGrs~~vGrpla~lL~~~~atVtv~hs~t~~L~-------------------------------------~~~~~ 195 (279)
T PRK14178 153 KRAVVVGRSIDVGRPMAALLLNADATVTICHSKTENLK-------------------------------------AELRQ 195 (279)
T ss_pred CEEEEECCCccccHHHHHHHHhCCCeeEEEecChhHHH-------------------------------------HHHhh
Confidence 689999988 7899999999999999999987654332 33678
Q ss_pred CCEEEEeccCChHHHHHHHHHHHHhCCCCcEEEecCCC
Q 007805 388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTST 425 (589)
Q Consensus 388 aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~ 425 (589)
||+||-|++-.--++. +.+++++++++....
T Consensus 196 ADIvI~Avgk~~lv~~-------~~vk~GavVIDVgi~ 226 (279)
T PRK14178 196 ADILVSAAGKAGFITP-------DMVKPGATVIDVGIN 226 (279)
T ss_pred CCEEEECCCcccccCH-------HHcCCCcEEEEeecc
Confidence 9999999972211222 236899999876543
No 437
>PRK06349 homoserine dehydrogenase; Provisional
Probab=94.52 E-value=0.077 Score=57.10 Aligned_cols=35 Identities=29% Similarity=0.287 Sum_probs=26.6
Q ss_pred ceEEEEcCCCCcHHHHHHHHhC--------C--Ce-EEEEeCChHH
Q 007805 309 RKVAVIGGGLMGSGIATAHILN--------N--IY-VVLKEVNSEY 343 (589)
Q Consensus 309 ~kI~IIG~G~mG~~iA~~l~~~--------G--~~-V~~~d~~~~~ 343 (589)
-+|+|||+|.||..++..+.++ | ++ +.++|+++++
T Consensus 4 i~VgiiG~G~VG~~~~~~L~~~~~~l~~~~g~~i~l~~V~~~~~~~ 49 (426)
T PRK06349 4 LKVGLLGLGTVGSGVVRILEENAEEIAARAGRPIEIKKVAVRDLEK 49 (426)
T ss_pred EEEEEEeeCHHHHHHHHHHHHhHHHHHHhcCCCEEEEEEEeCChhh
Confidence 5799999999999999877553 3 34 3467888665
No 438
>PLN02968 Probable N-acetyl-gamma-glutamyl-phosphate reductase
Probab=94.44 E-value=0.077 Score=56.04 Aligned_cols=100 Identities=14% Similarity=0.219 Sum_probs=61.0
Q ss_pred ccceEEEEcC-CCCcHHHHHHHHhC-CCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc--
Q 007805 307 GVRKVAVIGG-GLMGSGIATAHILN-NIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-- 382 (589)
Q Consensus 307 ~~~kI~IIG~-G~mG~~iA~~l~~~-G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-- 382 (589)
.++||+|||+ |..|.-+...|..+ +++|+.+..+.+.-+.. ...... +..+. .....+.
T Consensus 37 ~~~kVaIvGATG~vG~eLlrlL~~hP~~el~~l~s~~saG~~i----~~~~~~-l~~~~------------~~~~~~~~~ 99 (381)
T PLN02968 37 EKKRIFVLGASGYTGAEVRRLLANHPDFEITVMTADRKAGQSF----GSVFPH-LITQD------------LPNLVAVKD 99 (381)
T ss_pred cccEEEEECCCChHHHHHHHHHHhCCCCeEEEEEChhhcCCCc----hhhCcc-ccCcc------------ccceecCCH
Confidence 4569999997 99999999999998 77999887754332111 000000 00010 0001111
Q ss_pred cCCCCCCEEEEeccCChHHHHHHHHHHHHhCCCCcEEEecCCCCCHH
Q 007805 383 SEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLN 429 (589)
Q Consensus 383 ~~~~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~ 429 (589)
+.++++|+||.|+|.. .-.++... +..++.|+++++....+
T Consensus 100 ~~~~~~DvVf~Alp~~--~s~~i~~~----~~~g~~VIDlSs~fRl~ 140 (381)
T PLN02968 100 ADFSDVDAVFCCLPHG--TTQEIIKA----LPKDLKIVDLSADFRLR 140 (381)
T ss_pred HHhcCCCEEEEcCCHH--HHHHHHHH----HhCCCEEEEcCchhccC
Confidence 3358899999999843 33344444 34568888998866544
No 439
>COG0499 SAM1 S-adenosylhomocysteine hydrolase [Coenzyme metabolism]
Probab=94.43 E-value=0.12 Score=52.71 Aligned_cols=87 Identities=22% Similarity=0.218 Sum_probs=62.8
Q ss_pred ceEEEEcCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCccCCCCC
Q 007805 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKDV 388 (589)
Q Consensus 309 ~kI~IIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~a 388 (589)
+++.|.|.|-.|.++|..+...|.+|++++++|-+.-+| .++......-.++++.+
T Consensus 210 K~vVV~GYG~vGrG~A~~~rg~GA~ViVtEvDPI~AleA------------------------~MdGf~V~~m~~Aa~~g 265 (420)
T COG0499 210 KNVVVAGYGWVGRGIAMRLRGMGARVIVTEVDPIRALEA------------------------AMDGFRVMTMEEAAKTG 265 (420)
T ss_pred ceEEEecccccchHHHHHhhcCCCeEEEEecCchHHHHH------------------------hhcCcEEEEhHHhhhcC
Confidence 568889999999999999999999999999998764332 23344444444778899
Q ss_pred CEEEEeccCChHHHHHHHHHHHHhCCCCcEEEecCC
Q 007805 389 DMVIEAVIESVPLKQKIFSELEKACPPHCILATNTS 424 (589)
Q Consensus 389 DlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts 424 (589)
|++|.|.-..-.+..+- ...+++++|+ .|..
T Consensus 266 DifiT~TGnkdVi~~eh----~~~MkDgaIl-~N~G 296 (420)
T COG0499 266 DIFVTATGNKDVIRKEH----FEKMKDGAIL-ANAG 296 (420)
T ss_pred CEEEEccCCcCccCHHH----HHhccCCeEE-eccc
Confidence 99999986544333333 3346777776 4554
No 440
>PRK14190 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=94.39 E-value=0.13 Score=51.66 Aligned_cols=72 Identities=17% Similarity=0.236 Sum_probs=52.7
Q ss_pred ceEEEEcC-CCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCccCCCC
Q 007805 309 RKVAVIGG-GLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKD 387 (589)
Q Consensus 309 ~kI~IIG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~ 387 (589)
++|.|||- ...|.++|..|.+.|..|++++.....++ +.++.
T Consensus 159 k~vvViGrS~iVG~Pla~lL~~~~atVt~chs~t~~l~-------------------------------------~~~~~ 201 (284)
T PRK14190 159 KHVVVVGRSNIVGKPVGQLLLNENATVTYCHSKTKNLA-------------------------------------ELTKQ 201 (284)
T ss_pred CEEEEECCCCccHHHHHHHHHHCCCEEEEEeCCchhHH-------------------------------------HHHHh
Confidence 68999995 67799999999999999999875432221 33678
Q ss_pred CCEEEEeccCChHHHHHHHHHHHHhCCCCcEEEecCC
Q 007805 388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTS 424 (589)
Q Consensus 388 aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts 424 (589)
||+||.|+.-.- ++. .+.+++++++++...
T Consensus 202 ADIvI~AvG~p~-----~i~--~~~ik~gavVIDvGi 231 (284)
T PRK14190 202 ADILIVAVGKPK-----LIT--ADMVKEGAVVIDVGV 231 (284)
T ss_pred CCEEEEecCCCC-----cCC--HHHcCCCCEEEEeec
Confidence 999999996222 222 235789999887553
No 441
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=94.38 E-value=0.34 Score=52.58 Aligned_cols=33 Identities=27% Similarity=0.380 Sum_probs=31.6
Q ss_pred ceEEEEcCCCCcHHHHHHHHhCCCeEEEEeCCh
Q 007805 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNS 341 (589)
Q Consensus 309 ~kI~IIG~G~mG~~iA~~l~~~G~~V~~~d~~~ 341 (589)
++|.|+|+|.+|.++|..|++.|++|+++|++.
T Consensus 6 k~v~iiG~g~~G~~~A~~l~~~G~~V~~~d~~~ 38 (450)
T PRK14106 6 KKVLVVGAGVSGLALAKFLKKLGAKVILTDEKE 38 (450)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence 689999999999999999999999999999985
No 442
>COG0190 FolD 5,10-methylene-tetrahydrofolate dehydrogenase/Methenyl tetrahydrofolate cyclohydrolase [Coenzyme metabolism]
Probab=94.38 E-value=0.077 Score=52.72 Aligned_cols=93 Identities=16% Similarity=0.183 Sum_probs=63.4
Q ss_pred HHHHhHHHHHHHhhhccCCCCCCCCCCCCCccceEEEEcCCCC-cHHHHHHHHhCCCeEEEEeCChHHHHHHHHHHHHHH
Q 007805 277 DTSRGLVHVFFAQRATSKVPNVTDIGLKPRGVRKVAVIGGGLM-GSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANV 355 (589)
Q Consensus 277 ~~~~~~i~af~~~r~~~~~~~~~~~~~~~~~~~kI~IIG~G~m-G~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~ 355 (589)
|-.-+++..+++.-...- .=+++.|||-+.+ |.+||..|.+.++.|+++......+.
T Consensus 137 PCTp~gi~~ll~~~~i~l------------~Gk~~vVVGrS~iVGkPla~lL~~~naTVtvcHs~T~~l~---------- 194 (283)
T COG0190 137 PCTPAGIMTLLEEYGIDL------------RGKNVVVVGRSNIVGKPLALLLLNANATVTVCHSRTKDLA---------- 194 (283)
T ss_pred CCCHHHHHHHHHHhCCCC------------CCCEEEEECCCCcCcHHHHHHHHhCCCEEEEEcCCCCCHH----------
Confidence 444556666665554321 1167999998665 99999999999999999985432211
Q ss_pred HhhHhcCCCCHHHHHHHhhcccccCCccCCCCCCEEEEeccCChHHHHHHHHHHHHhCCCCcEEEecCCC
Q 007805 356 RGLVTRGKLTQDKANNALKMLKGVLDYSEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTST 425 (589)
Q Consensus 356 ~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~ 425 (589)
+.++.||+||.|+-- ..++. .+.+++++++++....
T Consensus 195 ---------------------------~~~k~ADIvv~AvG~-----p~~i~--~d~vk~gavVIDVGin 230 (283)
T COG0190 195 ---------------------------SITKNADIVVVAVGK-----PHFIK--ADMVKPGAVVIDVGIN 230 (283)
T ss_pred ---------------------------HHhhhCCEEEEecCC-----ccccc--cccccCCCEEEecCCc
Confidence 336889999999951 12222 4567889988876543
No 443
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).
Probab=94.36 E-value=0.13 Score=50.30 Aligned_cols=33 Identities=24% Similarity=0.288 Sum_probs=29.7
Q ss_pred ceEEEEcCCCCcHHHHHHHHhCCC-eEEEEeCCh
Q 007805 309 RKVAVIGGGLMGSGIATAHILNNI-YVVLKEVNS 341 (589)
Q Consensus 309 ~kI~IIG~G~mG~~iA~~l~~~G~-~V~~~d~~~ 341 (589)
.+|.|||+|-+|+.+|..|+..|+ +++++|.+.
T Consensus 22 ~~VlivG~GglGs~va~~La~~Gvg~i~lvD~D~ 55 (228)
T cd00757 22 ARVLVVGAGGLGSPAAEYLAAAGVGKLGLVDDDV 55 (228)
T ss_pred CcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCE
Confidence 579999999999999999999998 788887653
No 444
>TIGR01850 argC N-acetyl-gamma-glutamyl-phosphate reductase, common form. This model represents the more common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and the gap architecture in a multiple sequence alignment. Bacterial members of this family tend to be found within Arg biosynthesis operons.
Probab=94.35 E-value=0.1 Score=54.55 Aligned_cols=100 Identities=18% Similarity=0.154 Sum_probs=58.3
Q ss_pred ceEEEEcC-CCCcHHHHHHHHhC-CCeEE-EEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhccccc-CCc-c
Q 007805 309 RKVAVIGG-GLMGSGIATAHILN-NIYVV-LKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGV-LDY-S 383 (589)
Q Consensus 309 ~kI~IIG~-G~mG~~iA~~l~~~-G~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~-~~~-~ 383 (589)
.||+|||+ |.+|..++..|.++ +++++ +++.+.+.-+.. ...+ +.+.. . ....+. .+. +
T Consensus 1 ~kVaIiGATG~vG~ellr~L~~hP~~el~~l~~s~~sagk~~----~~~~------~~l~~-----~-~~~~~~~~~~~~ 64 (346)
T TIGR01850 1 IKVAIVGASGYTGGELLRLLLNHPEVEITYLVSSRESAGKPV----SEVH------PHLRG-----L-VDLNLEPIDEEE 64 (346)
T ss_pred CEEEEECCCCHHHHHHHHHHHcCCCceEEEEeccchhcCCCh----HHhC------ccccc-----c-CCceeecCCHHH
Confidence 37999998 99999999999977 66877 556554321111 1000 00000 0 000111 122 2
Q ss_pred CCCCCCEEEEeccCChHHHHHHHHHHHHhCCCCcEEEecCCCCCHH
Q 007805 384 EFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLN 429 (589)
Q Consensus 384 ~~~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~ 429 (589)
.++++|+||.|+|... -.++..++. ..++.|+++++....+
T Consensus 65 ~~~~~DvVf~alP~~~--s~~~~~~~~---~~G~~VIDlS~~fR~~ 105 (346)
T TIGR01850 65 IAEDADVVFLALPHGV--SAELAPELL---AAGVKVIDLSADFRLK 105 (346)
T ss_pred hhcCCCEEEECCCchH--HHHHHHHHH---hCCCEEEeCChhhhcC
Confidence 3358999999999554 334444443 4578888998876554
No 445
>PRK14180 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=94.30 E-value=0.081 Score=53.03 Aligned_cols=72 Identities=15% Similarity=0.147 Sum_probs=53.3
Q ss_pred ceEEEEcC-CCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCccCCCC
Q 007805 309 RKVAVIGG-GLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKD 387 (589)
Q Consensus 309 ~kI~IIG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~ 387 (589)
++|.|||- ...|.++|..|.++|..|+++......+. +.++.
T Consensus 159 k~vvViGrS~~VGkPla~lL~~~~ATVt~chs~T~dl~-------------------------------------~~~k~ 201 (282)
T PRK14180 159 AYAVVVGASNVVGKPVSQLLLNAKATVTTCHRFTTDLK-------------------------------------SHTTK 201 (282)
T ss_pred CEEEEECCCCcchHHHHHHHHHCCCEEEEEcCCCCCHH-------------------------------------HHhhh
Confidence 68999996 66799999999999999999875322111 33688
Q ss_pred CCEEEEeccCChHHHHHHHHHHHHhCCCCcEEEecCC
Q 007805 388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTS 424 (589)
Q Consensus 388 aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts 424 (589)
||+||.|+. +..++. .+.+++++++++...
T Consensus 202 ADIvIsAvG-----kp~~i~--~~~vk~gavVIDvGi 231 (282)
T PRK14180 202 ADILIVAVG-----KPNFIT--ADMVKEGAVVIDVGI 231 (282)
T ss_pred cCEEEEccC-----CcCcCC--HHHcCCCcEEEEecc
Confidence 999999997 223333 246889999987653
No 446
>PRK14176 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=94.29 E-value=0.12 Score=51.88 Aligned_cols=73 Identities=15% Similarity=0.159 Sum_probs=53.3
Q ss_pred ceEEEEcCCC-CcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCccCCCC
Q 007805 309 RKVAVIGGGL-MGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKD 387 (589)
Q Consensus 309 ~kI~IIG~G~-mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~ 387 (589)
++|.|||-+. .|.++|..|.+.|..|++++.....+. +.+++
T Consensus 165 k~vvViGrs~iVGkPla~lL~~~~atVtv~hs~T~~l~-------------------------------------~~~~~ 207 (287)
T PRK14176 165 KNAVIVGHSNVVGKPMAAMLLNRNATVSVCHVFTDDLK-------------------------------------KYTLD 207 (287)
T ss_pred CEEEEECCCcccHHHHHHHHHHCCCEEEEEeccCCCHH-------------------------------------HHHhh
Confidence 6899999877 899999999999999999985422111 33688
Q ss_pred CCEEEEeccCChHHHHHHHHHHHHhCCCCcEEEecCCC
Q 007805 388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTST 425 (589)
Q Consensus 388 aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~ 425 (589)
||+||.|+.- + .++. .+.+++++++++..+.
T Consensus 208 ADIvv~AvG~-p----~~i~--~~~vk~gavVIDvGin 238 (287)
T PRK14176 208 ADILVVATGV-K----HLIK--ADMVKEGAVIFDVGIT 238 (287)
T ss_pred CCEEEEccCC-c----cccC--HHHcCCCcEEEEeccc
Confidence 9999998741 1 2221 2368899999876543
No 447
>cd05211 NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of glutamate dehydrogenase, leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NAD(P)+. This subfamily includes glutamate, leucine, phenylalanine, and valine DHs. Glutamate DH is a multi-domain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. As in other NAD+-dependent DHs, monomers in this family have 2 domains separated by a deep cleft. Here the c-terminal domain contains a modified NAD-binding Rossmann fold with 7 rather than the usual 6 beta strands and one strand anti-parral
Probab=94.22 E-value=0.11 Score=50.30 Aligned_cols=33 Identities=24% Similarity=0.253 Sum_probs=29.9
Q ss_pred ceEEEEcCCCCcHHHHHHHHhCCC-eEEEEeCCh
Q 007805 309 RKVAVIGGGLMGSGIATAHILNNI-YVVLKEVNS 341 (589)
Q Consensus 309 ~kI~IIG~G~mG~~iA~~l~~~G~-~V~~~d~~~ 341 (589)
++|+|.|+|++|..+|..|.+.|. .|.+.|.+.
T Consensus 24 ~~vaIqGfGnVG~~~a~~L~~~G~~vV~vsD~~g 57 (217)
T cd05211 24 LTVAVQGLGNVGWGLAKKLAEEGGKVLAVSDPDG 57 (217)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCEEEEEEcCCC
Confidence 689999999999999999999988 566789887
No 448
>COG0673 MviM Predicted dehydrogenases and related proteins [General function prediction only]
Probab=94.17 E-value=0.16 Score=52.74 Aligned_cols=73 Identities=18% Similarity=0.146 Sum_probs=48.8
Q ss_pred ccceEEEEcCCCCc-HHHHHHHHhCCC---eEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc
Q 007805 307 GVRKVAVIGGGLMG-SGIATAHILNNI---YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY 382 (589)
Q Consensus 307 ~~~kI~IIG~G~mG-~~iA~~l~~~G~---~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~ 382 (589)
.+.||||||+|.++ ...+..+.+.+. -|-++|+++++++...+.. +.-...+++
T Consensus 2 ~~irvgiiG~G~~~~~~~~~~~~~~~~~~~~vav~d~~~~~a~~~a~~~----------------------~~~~~~~~~ 59 (342)
T COG0673 2 KMIRVGIIGAGGIAGKAHLPALAALGGGLELVAVVDRDPERAEAFAEEF----------------------GIAKAYTDL 59 (342)
T ss_pred CeeEEEEEcccHHHHHHhHHHHHhCCCceEEEEEecCCHHHHHHHHHHc----------------------CCCcccCCH
Confidence 45789999999554 557777777652 4668899999877653321 111345555
Q ss_pred -cCCC--CCCEEEEeccCChHH
Q 007805 383 -SEFK--DVDMVIEAVIESVPL 401 (589)
Q Consensus 383 -~~~~--~aDlVIeavpe~~~~ 401 (589)
+.++ +.|+|++|+|.+...
T Consensus 60 ~~ll~~~~iD~V~Iatp~~~H~ 81 (342)
T COG0673 60 EELLADPDIDAVYIATPNALHA 81 (342)
T ss_pred HHHhcCCCCCEEEEcCCChhhH
Confidence 3343 379999999976654
No 449
>PRK14173 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=94.16 E-value=0.089 Score=52.88 Aligned_cols=73 Identities=16% Similarity=0.297 Sum_probs=53.4
Q ss_pred ceEEEEcC-CCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCccCCCC
Q 007805 309 RKVAVIGG-GLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKD 387 (589)
Q Consensus 309 ~kI~IIG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~ 387 (589)
++|.|||- ...|.++|..|.+.|..|+++......++ +.+++
T Consensus 156 k~vvViGrS~iVGkPla~lL~~~~aTVtichs~T~~l~-------------------------------------~~~~~ 198 (287)
T PRK14173 156 KEVVVVGRSNIVGKPLAALLLREDATVTLAHSKTQDLP-------------------------------------AVTRR 198 (287)
T ss_pred CEEEEECCCCccHHHHHHHHHHCCCEEEEeCCCCCCHH-------------------------------------HHHhh
Confidence 68999996 66799999999999999998874322111 34678
Q ss_pred CCEEEEeccCChHHHHHHHHHHHHhCCCCcEEEecCCC
Q 007805 388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTST 425 (589)
Q Consensus 388 aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~ 425 (589)
||+||.|+.- ..++. .+.+++++++++....
T Consensus 199 ADIvIsAvGk-----p~~i~--~~~vk~GavVIDVGin 229 (287)
T PRK14173 199 ADVLVVAVGR-----PHLIT--PEMVRPGAVVVDVGIN 229 (287)
T ss_pred CCEEEEecCC-----cCccC--HHHcCCCCEEEEccCc
Confidence 9999999962 22332 3468899999876543
No 450
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated
Probab=94.14 E-value=0.2 Score=53.00 Aligned_cols=32 Identities=22% Similarity=0.287 Sum_probs=30.0
Q ss_pred ceEEEEcCCCCcHHHHHHHHhCCC-eEEEEeCC
Q 007805 309 RKVAVIGGGLMGSGIATAHILNNI-YVVLKEVN 340 (589)
Q Consensus 309 ~kI~IIG~G~mG~~iA~~l~~~G~-~V~~~d~~ 340 (589)
.+|.|||+|-.|+.++..|+..|. +++++|.+
T Consensus 136 ~~VlvvG~GG~Gs~ia~~La~~Gvg~i~lvD~d 168 (376)
T PRK08762 136 ARVLLIGAGGLGSPAALYLAAAGVGTLGIVDHD 168 (376)
T ss_pred CcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 469999999999999999999998 79999987
No 451
>PRK05597 molybdopterin biosynthesis protein MoeB; Validated
Probab=94.08 E-value=0.11 Score=54.61 Aligned_cols=33 Identities=27% Similarity=0.313 Sum_probs=30.3
Q ss_pred ceEEEEcCCCCcHHHHHHHHhCCC-eEEEEeCCh
Q 007805 309 RKVAVIGGGLMGSGIATAHILNNI-YVVLKEVNS 341 (589)
Q Consensus 309 ~kI~IIG~G~mG~~iA~~l~~~G~-~V~~~d~~~ 341 (589)
.+|.|||+|-.|+.++..|+..|+ +++++|.+.
T Consensus 29 ~~VlivG~GGlGs~~a~~La~~Gvg~i~lvD~D~ 62 (355)
T PRK05597 29 AKVAVIGAGGLGSPALLYLAGAGVGHITIIDDDT 62 (355)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCE
Confidence 589999999999999999999998 788998874
No 452
>COG0777 AccD Acetyl-CoA carboxylase beta subunit [Lipid metabolism]
Probab=94.07 E-value=0.83 Score=44.88 Aligned_cols=160 Identities=16% Similarity=0.176 Sum_probs=103.4
Q ss_pred EEEEEeCCC-CCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCCcCCCCchhhhhccCCCcccccchhHHHHHHHH
Q 007805 15 VAIITLINP-PVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNL 93 (589)
Q Consensus 15 v~~i~l~~p-~~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (589)
++...++-. -.-++..-.=+.+.++++.+-.+ .+.+|+++.+|+ +-.+|-.- ...++.+.. ..+ .+
T Consensus 124 vv~av~df~FmgGSmGsVvGeki~ra~E~A~e~-k~P~v~f~aSGG-----ARMQEg~l-----SLMQMakts-aAl-~~ 190 (294)
T COG0777 124 VVLAVMDFAFMGGSMGSVVGEKITRAIERAIED-KLPLVLFSASGG-----ARMQEGIL-----SLMQMAKTS-AAL-KR 190 (294)
T ss_pred EEEEEEeccccccchhHHHHHHHHHHHHHHHHh-CCCEEEEecCcc-----hhHhHHHH-----HHHHHHHHH-HHH-HH
Confidence 455555444 24677888888899999888765 478888887653 22222000 001111111 333 55
Q ss_pred HHhCCCcEEEEeCCcccchhh-HHhhhcCEEEEeCCceEeccccccCCCCChhhhhhHhhhcCHHHHHHHHHcCCCCCHH
Q 007805 94 IEDCKKPIVAAVEGLALGGGL-ELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSE 172 (589)
Q Consensus 94 l~~~~kp~iaav~G~a~GgG~-~lala~D~~ia~~~a~~~~pe~~~Gl~p~~g~~~~l~~~~G~~~a~~l~ltg~~~~a~ 172 (589)
+.....|.|+.+..+..||=. .+++..|+.||-++|.+||.-.++= -|.....++.. .=+++
T Consensus 191 l~ea~lpyIsVLt~PTtGGVsASfA~lGDi~iAEP~AlIGFAGpRVI-------EQTire~LPeg----------fQ~aE 253 (294)
T COG0777 191 LSEAGLPYISVLTDPTTGGVSASFAMLGDIIIAEPGALIGFAGPRVI-------EQTIREKLPEG----------FQTAE 253 (294)
T ss_pred HHhcCCceEEEecCCCccchhHhHHhccCeeecCcccccccCcchhh-------hhhhcccCCcc----------hhhHH
Confidence 788899999999999998864 7999999999999988877543310 11111111111 22567
Q ss_pred HHHHcCCcceecCchHHHHHHHHHHHHHHhcC
Q 007805 173 EGWKLGLIDAVVTSEELLKVSRLWALDIAARR 204 (589)
Q Consensus 173 ~A~~~Glv~~vv~~~~l~~~a~~~a~~la~~~ 204 (589)
-.++.|+||.||+..++......+...+...+
T Consensus 254 fLlehG~iD~iv~R~elr~tla~ll~~~~~~~ 285 (294)
T COG0777 254 FLLEHGMIDMIVHRDELRTTLASLLAKLTPQP 285 (294)
T ss_pred HHHHcCCceeeecHHHHHHHHHHHHHHhCCCC
Confidence 78899999999999998877776666655444
No 453
>COG1062 AdhC Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion]
Probab=93.98 E-value=0.93 Score=46.28 Aligned_cols=41 Identities=24% Similarity=0.236 Sum_probs=36.2
Q ss_pred ceEEEEcCCCCcHHHHHHHHhCCC-eEEEEeCChHHHHHHHH
Q 007805 309 RKVAVIGGGLMGSGIATAHILNNI-YVVLKEVNSEYLLKGIK 349 (589)
Q Consensus 309 ~kI~IIG~G~mG~~iA~~l~~~G~-~V~~~d~~~~~~~~~~~ 349 (589)
.+|+|+|+|-+|.+-.+.....|- .++.+|+++++++.+++
T Consensus 187 ~tvaV~GlGgVGlaaI~gA~~agA~~IiAvD~~~~Kl~~A~~ 228 (366)
T COG1062 187 DTVAVFGLGGVGLAAIQGAKAAGAGRIIAVDINPEKLELAKK 228 (366)
T ss_pred CeEEEEeccHhHHHHHHHHHHcCCceEEEEeCCHHHHHHHHh
Confidence 469999999999999999888886 78999999999998743
No 454
>PRK06270 homoserine dehydrogenase; Provisional
Probab=93.97 E-value=0.14 Score=53.31 Aligned_cols=22 Identities=36% Similarity=0.469 Sum_probs=19.7
Q ss_pred ceEEEEcCCCCcHHHHHHHHhC
Q 007805 309 RKVAVIGGGLMGSGIATAHILN 330 (589)
Q Consensus 309 ~kI~IIG~G~mG~~iA~~l~~~ 330 (589)
-+|+|+|+|+||..++..+.+.
T Consensus 3 i~V~IiG~G~VG~~~~~~L~~~ 24 (341)
T PRK06270 3 MKIALIGFGGVGQGVAELLAEK 24 (341)
T ss_pred EEEEEECCCHHHHHHHHHHHHh
Confidence 4799999999999999998765
No 455
>PRK08374 homoserine dehydrogenase; Provisional
Probab=93.96 E-value=0.26 Score=51.23 Aligned_cols=21 Identities=29% Similarity=0.371 Sum_probs=19.0
Q ss_pred ceEEEEcCCCCcHHHHHHHHh
Q 007805 309 RKVAVIGGGLMGSGIATAHIL 329 (589)
Q Consensus 309 ~kI~IIG~G~mG~~iA~~l~~ 329 (589)
-+|+|+|+|++|++++..+.+
T Consensus 3 i~VaIiG~GnVG~~~~~~L~~ 23 (336)
T PRK08374 3 VKVSIFGFGNVGRAVAEVLAE 23 (336)
T ss_pred eEEEEECCCHHHHHHHHHHHH
Confidence 479999999999999998876
No 456
>PRK05600 thiamine biosynthesis protein ThiF; Validated
Probab=93.90 E-value=0.12 Score=54.52 Aligned_cols=32 Identities=22% Similarity=0.335 Sum_probs=29.8
Q ss_pred ceEEEEcCCCCcHHHHHHHHhCCC-eEEEEeCC
Q 007805 309 RKVAVIGGGLMGSGIATAHILNNI-YVVLKEVN 340 (589)
Q Consensus 309 ~kI~IIG~G~mG~~iA~~l~~~G~-~V~~~d~~ 340 (589)
.+|.|||+|-+|+.++..|+..|. +++++|.+
T Consensus 42 ~~VliiG~GglG~~v~~~La~~Gvg~i~ivD~D 74 (370)
T PRK05600 42 ARVLVIGAGGLGCPAMQSLASAGVGTITLIDDD 74 (370)
T ss_pred CcEEEECCCHHHHHHHHHHHHcCCCEEEEEeCC
Confidence 479999999999999999999997 89999987
No 457
>cd01076 NAD_bind_1_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 1. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids
Probab=93.87 E-value=0.17 Score=49.41 Aligned_cols=32 Identities=28% Similarity=0.206 Sum_probs=29.3
Q ss_pred cceEEEEcCCCCcHHHHHHHHhCCCeEE-EEeC
Q 007805 308 VRKVAVIGGGLMGSGIATAHILNNIYVV-LKEV 339 (589)
Q Consensus 308 ~~kI~IIG~G~mG~~iA~~l~~~G~~V~-~~d~ 339 (589)
-++|+|.|.|.+|..+|..|.+.|..|+ +.|.
T Consensus 31 ~~~v~I~G~G~VG~~~a~~L~~~g~~vv~v~D~ 63 (227)
T cd01076 31 GARVAIQGFGNVGSHAARFLHEAGAKVVAVSDS 63 (227)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEECC
Confidence 3789999999999999999999999988 7777
No 458
>COG0136 Asd Aspartate-semialdehyde dehydrogenase [Amino acid transport and metabolism]
Probab=93.85 E-value=0.31 Score=49.79 Aligned_cols=146 Identities=21% Similarity=0.225 Sum_probs=79.4
Q ss_pred ceEEEEcC-CCCcHHHHHHHHhCCCe---EEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCccC
Q 007805 309 RKVAVIGG-GLMGSGIATAHILNNIY---VVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSE 384 (589)
Q Consensus 309 ~kI~IIG~-G~mG~~iA~~l~~~G~~---V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~ 384 (589)
.+|||+|+ |..|.-+...|.+..+. +.++-...+.=++..+ +.... + .-.....+...
T Consensus 2 ~~VavvGATG~VG~~~~~~L~e~~f~~~~~~~~AS~rSaG~~~~~--------f~~~~-~---------~v~~~~~~~~~ 63 (334)
T COG0136 2 LNVAVLGATGAVGQVLLELLEERHFPFEELVLLASARSAGKKYIE--------FGGKS-I---------GVPEDAADEFV 63 (334)
T ss_pred cEEEEEeccchHHHHHHHHHHhcCCCcceEEEEecccccCCcccc--------ccCcc-c---------cCccccccccc
Confidence 58999997 99999999999997553 3444333222111000 00000 0 00111133355
Q ss_pred CCCCCEEEEeccCChHHHHHHHHHHHHhCCCCcEEEecCCCCCHHHHhcccCCCCcEEEecCCCCCCCCCee---eEecC
Q 007805 385 FKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLL---EIVRT 461 (589)
Q Consensus 385 ~~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~~~~~~~~~~~r~ig~h~~~p~~~~~lv---eiv~~ 461 (589)
.+++|+|+-|.+.+.. +++..++. +.+++++||+|....+.= --+-....||-+....- -|+.+
T Consensus 64 ~~~~Divf~~ag~~~s--~~~~p~~~---~~G~~VIdnsSa~Rm~~D--------VPLVVPeVN~~~l~~~~~rg~Iian 130 (334)
T COG0136 64 FSDVDIVFFAAGGSVS--KEVEPKAA---EAGCVVIDNSSAFRMDPD--------VPLVVPEVNPEHLIDYQKRGFIIAN 130 (334)
T ss_pred cccCCEEEEeCchHHH--HHHHHHHH---HcCCEEEeCCcccccCCC--------CCEecCCcCHHHHHhhhhCCCEEEC
Confidence 6799999999985543 45555543 467999999998665421 11122222222111111 24544
Q ss_pred CCC-CHHHHHHHHHHHHHcCCeeEE
Q 007805 462 ERT-SAQVILDLMTVGKIIKKVPVV 485 (589)
Q Consensus 462 ~~t-~~e~~~~~~~l~~~lG~~~v~ 485 (589)
+++ ....+-.+.+|.+..|-.-++
T Consensus 131 pNCst~~l~~aL~PL~~~~~i~~v~ 155 (334)
T COG0136 131 PNCSTIQLVLALKPLHDAFGIKRVV 155 (334)
T ss_pred CChHHHHHHHHHHHHHhhcCceEEE
Confidence 444 455566777888877744443
No 459
>PRK12828 short chain dehydrogenase; Provisional
Probab=93.85 E-value=0.14 Score=49.96 Aligned_cols=39 Identities=26% Similarity=0.264 Sum_probs=34.4
Q ss_pred ceEEEEcC-CCCcHHHHHHHHhCCCeEEEEeCChHHHHHH
Q 007805 309 RKVAVIGG-GLMGSGIATAHILNNIYVVLKEVNSEYLLKG 347 (589)
Q Consensus 309 ~kI~IIG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~ 347 (589)
++|.|+|+ |.+|..++..|++.|++|++.+++++.....
T Consensus 8 k~vlItGatg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~ 47 (239)
T PRK12828 8 KVVAITGGFGGLGRATAAWLAARGARVALIGRGAAPLSQT 47 (239)
T ss_pred CEEEEECCCCcHhHHHHHHHHHCCCeEEEEeCChHhHHHH
Confidence 57999996 9999999999999999999999998765543
No 460
>PRK12829 short chain dehydrogenase; Provisional
Probab=93.82 E-value=0.36 Score=47.90 Aligned_cols=39 Identities=28% Similarity=0.286 Sum_probs=34.8
Q ss_pred ceEEEEcC-CCCcHHHHHHHHhCCCeEEEEeCChHHHHHH
Q 007805 309 RKVAVIGG-GLMGSGIATAHILNNIYVVLKEVNSEYLLKG 347 (589)
Q Consensus 309 ~kI~IIG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~ 347 (589)
++|.|+|+ |.+|..++..|+++|++|++.+++++..+..
T Consensus 12 ~~vlItGa~g~iG~~~a~~L~~~g~~V~~~~r~~~~~~~~ 51 (264)
T PRK12829 12 LRVLVTGGASGIGRAIAEAFAEAGARVHVCDVSEAALAAT 51 (264)
T ss_pred CEEEEeCCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHH
Confidence 68999996 9999999999999999999999998766554
No 461
>PRK14186 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=93.81 E-value=0.16 Score=51.36 Aligned_cols=73 Identities=18% Similarity=0.273 Sum_probs=53.1
Q ss_pred ceEEEEcC-CCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCccCCCC
Q 007805 309 RKVAVIGG-GLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKD 387 (589)
Q Consensus 309 ~kI~IIG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~ 387 (589)
++|.|||- ...|.++|..|.++|..|+++......++ +.++.
T Consensus 159 k~vvVIGrS~iVGkPla~lL~~~~atVtv~hs~T~~l~-------------------------------------~~~~~ 201 (297)
T PRK14186 159 KKAVVVGRSILVGKPLALMLLAANATVTIAHSRTQDLA-------------------------------------SITRE 201 (297)
T ss_pred CEEEEECCCccchHHHHHHHHHCCCEEEEeCCCCCCHH-------------------------------------HHHhh
Confidence 68999996 66799999999999999998864322111 33678
Q ss_pred CCEEEEeccCChHHHHHHHHHHHHhCCCCcEEEecCCC
Q 007805 388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTST 425 (589)
Q Consensus 388 aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~ 425 (589)
||+||.|+.- + .++. .+.+++++++++....
T Consensus 202 ADIvIsAvGk-p----~~i~--~~~ik~gavVIDvGin 232 (297)
T PRK14186 202 ADILVAAAGR-P----NLIG--AEMVKPGAVVVDVGIH 232 (297)
T ss_pred CCEEEEccCC-c----CccC--HHHcCCCCEEEEeccc
Confidence 9999999972 2 2222 3468899999876543
No 462
>PRK15116 sulfur acceptor protein CsdL; Provisional
Probab=93.79 E-value=0.15 Score=50.93 Aligned_cols=33 Identities=27% Similarity=0.350 Sum_probs=30.0
Q ss_pred ceEEEEcCCCCcHHHHHHHHhCCC-eEEEEeCCh
Q 007805 309 RKVAVIGGGLMGSGIATAHILNNI-YVVLKEVNS 341 (589)
Q Consensus 309 ~kI~IIG~G~mG~~iA~~l~~~G~-~V~~~d~~~ 341 (589)
.+|.|||+|-+|+.+|..|+..|. +++++|.+.
T Consensus 31 s~VlVvG~GGVGs~vae~Lar~GVg~itLiD~D~ 64 (268)
T PRK15116 31 AHICVVGIGGVGSWAAEALARTGIGAITLIDMDD 64 (268)
T ss_pred CCEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCE
Confidence 579999999999999999999995 899999774
No 463
>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E.coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=93.73 E-value=0.25 Score=48.44 Aligned_cols=33 Identities=30% Similarity=0.326 Sum_probs=30.2
Q ss_pred ceEEEEcCCCCcHHHHHHHHhCCC-eEEEEeCCh
Q 007805 309 RKVAVIGGGLMGSGIATAHILNNI-YVVLKEVNS 341 (589)
Q Consensus 309 ~kI~IIG~G~mG~~iA~~l~~~G~-~V~~~d~~~ 341 (589)
.+|.|+|+|-+|+.++..|++.|. +++++|.+.
T Consensus 12 ~~VlVvG~GGvGs~va~~Lar~GVg~i~LvD~D~ 45 (231)
T cd00755 12 AHVAVVGLGGVGSWAAEALARSGVGKLTLIDFDV 45 (231)
T ss_pred CCEEEECCCHHHHHHHHHHHHcCCCEEEEECCCE
Confidence 579999999999999999999998 899999764
No 464
>PRK14172 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=93.73 E-value=0.16 Score=50.92 Aligned_cols=71 Identities=21% Similarity=0.295 Sum_probs=52.4
Q ss_pred ceEEEEcC-CCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCccCCCC
Q 007805 309 RKVAVIGG-GLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKD 387 (589)
Q Consensus 309 ~kI~IIG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~ 387 (589)
++|.|||- ...|.++|..|.++|..|+++......+. +.+++
T Consensus 159 k~vvViGrS~~VGkPla~lL~~~~AtVt~chs~T~~l~-------------------------------------~~~~~ 201 (278)
T PRK14172 159 KEVVVIGRSNIVGKPVAQLLLNENATVTICHSKTKNLK-------------------------------------EVCKK 201 (278)
T ss_pred CEEEEECCCccchHHHHHHHHHCCCEEEEeCCCCCCHH-------------------------------------HHHhh
Confidence 68999996 66799999999999999999974422111 33678
Q ss_pred CCEEEEeccCChHHHHHHHHHHHHhCCCCcEEEecC
Q 007805 388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNT 423 (589)
Q Consensus 388 aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~t 423 (589)
||+||.|+.-. .++. .+.+++++++++..
T Consensus 202 ADIvIsAvGkp-----~~i~--~~~ik~gavVIDvG 230 (278)
T PRK14172 202 ADILVVAIGRP-----KFID--EEYVKEGAIVIDVG 230 (278)
T ss_pred CCEEEEcCCCc-----CccC--HHHcCCCcEEEEee
Confidence 99999999622 2222 24588999988753
No 465
>PRK14183 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=93.73 E-value=0.17 Score=50.75 Aligned_cols=72 Identities=22% Similarity=0.285 Sum_probs=52.5
Q ss_pred ceEEEEcCC-CCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCccCCCC
Q 007805 309 RKVAVIGGG-LMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKD 387 (589)
Q Consensus 309 ~kI~IIG~G-~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~ 387 (589)
++|.|||-+ ..|.++|..|.++|..|+++......+. +.++.
T Consensus 158 k~vvViGrS~~VG~Pla~lL~~~~AtVti~hs~T~~l~-------------------------------------~~~~~ 200 (281)
T PRK14183 158 KDVCVVGASNIVGKPMAALLLNANATVDICHIFTKDLK-------------------------------------AHTKK 200 (281)
T ss_pred CEEEEECCCCcchHHHHHHHHHCCCEEEEeCCCCcCHH-------------------------------------HHHhh
Confidence 689999987 7799999999999999998763321111 34688
Q ss_pred CCEEEEeccCChHHHHHHHHHHHHhCCCCcEEEecCC
Q 007805 388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTS 424 (589)
Q Consensus 388 aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts 424 (589)
||+||.|+. +..++. .+.+++++++++...
T Consensus 201 ADIvV~AvG-----kp~~i~--~~~vk~gavvIDvGi 230 (281)
T PRK14183 201 ADIVIVGVG-----KPNLIT--EDMVKEGAIVIDIGI 230 (281)
T ss_pred CCEEEEecC-----cccccC--HHHcCCCcEEEEeec
Confidence 999999996 222322 246789999887543
No 466
>PLN02516 methylenetetrahydrofolate dehydrogenase (NADP+)
Probab=93.72 E-value=0.18 Score=50.98 Aligned_cols=72 Identities=15% Similarity=0.220 Sum_probs=52.7
Q ss_pred ceEEEEcC-CCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCccCCCC
Q 007805 309 RKVAVIGG-GLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKD 387 (589)
Q Consensus 309 ~kI~IIG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~ 387 (589)
++|.|||- ...|.++|..|.+.|..|+++......++ +.+++
T Consensus 168 k~vvVIGRS~iVGkPla~lL~~~~ATVtvchs~T~nl~-------------------------------------~~~~~ 210 (299)
T PLN02516 168 KKAVVVGRSNIVGLPVSLLLLKADATVTVVHSRTPDPE-------------------------------------SIVRE 210 (299)
T ss_pred CEEEEECCCccchHHHHHHHHHCCCEEEEeCCCCCCHH-------------------------------------HHHhh
Confidence 68999996 56699999999999999999974322111 34688
Q ss_pred CCEEEEeccCChHHHHHHHHHHHHhCCCCcEEEecCC
Q 007805 388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTS 424 (589)
Q Consensus 388 aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts 424 (589)
||+||.|+.-.. ++. .+.+++++++++...
T Consensus 211 ADIvv~AvGk~~-----~i~--~~~vk~gavVIDvGi 240 (299)
T PLN02516 211 ADIVIAAAGQAM-----MIK--GDWIKPGAAVIDVGT 240 (299)
T ss_pred CCEEEEcCCCcC-----ccC--HHHcCCCCEEEEeec
Confidence 999999996322 222 245789999886543
No 467
>PRK14874 aspartate-semialdehyde dehydrogenase; Provisional
Probab=93.69 E-value=0.12 Score=53.88 Aligned_cols=143 Identities=18% Similarity=0.158 Sum_probs=78.1
Q ss_pred ceEEEEcC-CCCcHHHHHHHHhCCCeE---EEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccC-Ccc
Q 007805 309 RKVAVIGG-GLMGSGIATAHILNNIYV---VLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVL-DYS 383 (589)
Q Consensus 309 ~kI~IIG~-G~mG~~iA~~l~~~G~~V---~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~-~~~ 383 (589)
.||+|||+ |..|.-+...|.++||++ ....++.+.-+.. . . .+ ..+...+ +..
T Consensus 2 ~~V~IvGAtG~vG~~l~~lL~~~~hp~~~l~~l~s~~~~g~~l----~------~-~g-----------~~i~v~d~~~~ 59 (334)
T PRK14874 2 YNVAVVGATGAVGREMLNILEERNFPVDKLRLLASARSAGKEL----S------F-KG-----------KELKVEDLTTF 59 (334)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCCcceEEEEEccccCCCee----e------e-CC-----------ceeEEeeCCHH
Confidence 58999997 999999999999988854 5554443221110 0 0 01 0111111 113
Q ss_pred CCCCCCEEEEeccCChHHHHHHHHHHHHhCCCCcEEEecCCCCCHHHHhcccCCCCcEEEecCCCCCCCCCe--eeEecC
Q 007805 384 EFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPL--LEIVRT 461 (589)
Q Consensus 384 ~~~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~~~~~~~~~~~r~ig~h~~~p~~~~~l--veiv~~ 461 (589)
.++++|+||+|+| ...-+++..++ +..+++|+++++....+. . .| .++.-.|+..+... -.++..
T Consensus 60 ~~~~vDvVf~A~g--~g~s~~~~~~~---~~~G~~VIDlS~~~R~~~-~----~p---~~lpevn~~~i~~~~~~~iVan 126 (334)
T PRK14874 60 DFSGVDIALFSAG--GSVSKKYAPKA---AAAGAVVIDNSSAFRMDP-D----VP---LVVPEVNPEALAEHRKKGIIAN 126 (334)
T ss_pred HHcCCCEEEECCC--hHHHHHHHHHH---HhCCCEEEECCchhhcCC-C----CC---eEcCCcCHHHHhhhhcCCeEEC
Confidence 3578999999998 43444555544 345778888887654432 0 11 23333332222110 026666
Q ss_pred CCCCHHHHH-HHHHHHHHcCCeeEEE
Q 007805 462 ERTSAQVIL-DLMTVGKIIKKVPVVV 486 (589)
Q Consensus 462 ~~t~~e~~~-~~~~l~~~lG~~~v~v 486 (589)
+.+....+. .+..|.+..+-..+++
T Consensus 127 p~C~~t~~~l~l~pL~~~~~i~~i~v 152 (334)
T PRK14874 127 PNCSTIQMVVALKPLHDAAGIKRVVV 152 (334)
T ss_pred ccHHHHHHHHHHHHHHHhcCceEEEE
Confidence 666555444 4555666666544444
No 468
>PRK12749 quinate/shikimate dehydrogenase; Reviewed
Probab=93.68 E-value=0.15 Score=51.73 Aligned_cols=34 Identities=15% Similarity=0.319 Sum_probs=31.1
Q ss_pred ceEEEEcCCCCcHHHHHHHHhCCC-eEEEEeCChH
Q 007805 309 RKVAVIGGGLMGSGIATAHILNNI-YVVLKEVNSE 342 (589)
Q Consensus 309 ~kI~IIG~G~mG~~iA~~l~~~G~-~V~~~d~~~~ 342 (589)
+++.|||+|-.+++++..++..|. +|++++|+++
T Consensus 125 k~vlvlGaGGaarAi~~~l~~~g~~~i~i~nRt~~ 159 (288)
T PRK12749 125 KTMVLLGAGGASTAIGAQGAIEGLKEIKLFNRRDE 159 (288)
T ss_pred CEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCcc
Confidence 579999999999999999999887 8999999965
No 469
>PRK14170 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=93.64 E-value=0.2 Score=50.32 Aligned_cols=73 Identities=19% Similarity=0.258 Sum_probs=53.1
Q ss_pred ceEEEEcC-CCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCccCCCC
Q 007805 309 RKVAVIGG-GLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKD 387 (589)
Q Consensus 309 ~kI~IIG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~ 387 (589)
++|.|||- ...|.++|..|.++|..|+++......++ +.+++
T Consensus 158 k~vvVvGrS~iVGkPla~lL~~~~atVtichs~T~~l~-------------------------------------~~~~~ 200 (284)
T PRK14170 158 KRAVVIGRSNIVGKPVAQLLLNENATVTIAHSRTKDLP-------------------------------------QVAKE 200 (284)
T ss_pred CEEEEECCCCcchHHHHHHHHHCCCEEEEeCCCCCCHH-------------------------------------HHHhh
Confidence 68999996 56699999999999999998864322111 34688
Q ss_pred CCEEEEeccCChHHHHHHHHHHHHhCCCCcEEEecCCC
Q 007805 388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTST 425 (589)
Q Consensus 388 aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~ 425 (589)
||+||.|+.- ..++. .+.+++++++++...+
T Consensus 201 ADIvI~AvG~-----~~~i~--~~~vk~GavVIDvGin 231 (284)
T PRK14170 201 ADILVVATGL-----AKFVK--KDYIKPGAIVIDVGMD 231 (284)
T ss_pred CCEEEEecCC-----cCccC--HHHcCCCCEEEEccCc
Confidence 9999999962 22222 2468899999876543
No 470
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=93.62 E-value=0.65 Score=45.10 Aligned_cols=100 Identities=16% Similarity=0.102 Sum_probs=60.3
Q ss_pred ceEEEEcCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHHHHHHHh-hHhcCCCCHHHHHHHhhcccc-cCCc----
Q 007805 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRG-LVTRGKLTQDKANNALKMLKG-VLDY---- 382 (589)
Q Consensus 309 ~kI~IIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~i~~-~~~~---- 382 (589)
.+|-++|+|. +.-|..|+..|++|+.+|.++..++.+..+. .+.. ....|... . ..-.+++. ..|.
T Consensus 39 ~rvL~~gCG~--G~da~~LA~~G~~V~avD~s~~Ai~~~~~~~--~l~~~~~~~~~~~---~-~~~~~v~~~~~D~~~l~ 110 (218)
T PRK13255 39 SRVLVPLCGK--SLDMLWLAEQGHEVLGVELSELAVEQFFAEN--GLTPQTRQSGEFE---H-YQAGEITIYCGDFFALT 110 (218)
T ss_pred CeEEEeCCCC--hHhHHHHHhCCCeEEEEccCHHHHHHHHHHc--CCCcccccccccc---c-cccCceEEEECcccCCC
Confidence 4899999998 5677788999999999999999998753210 0000 00000000 0 00012221 1222
Q ss_pred -cCCCCCCEEEE-----eccCChHHHHHHHHHHHHhCCCCcE
Q 007805 383 -SEFKDVDMVIE-----AVIESVPLKQKIFSELEKACPPHCI 418 (589)
Q Consensus 383 -~~~~~aDlVIe-----avpe~~~~k~~v~~~l~~~~~~~~i 418 (589)
+.....|+|++ ++| ++....+++.+...++|+..
T Consensus 111 ~~~~~~fd~v~D~~~~~~l~--~~~R~~~~~~l~~lL~pgG~ 150 (218)
T PRK13255 111 AADLADVDAVYDRAALIALP--EEMRERYVQQLAALLPAGCR 150 (218)
T ss_pred cccCCCeeEEEehHhHhhCC--HHHHHHHHHHHHHHcCCCCe
Confidence 11234578884 444 67788899999999999853
No 471
>COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only]
Probab=93.62 E-value=0.17 Score=50.30 Aligned_cols=48 Identities=15% Similarity=0.144 Sum_probs=42.3
Q ss_pred CccceEEEEcC-CCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHHHH
Q 007805 306 RGVRKVAVIGG-GLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEA 353 (589)
Q Consensus 306 ~~~~kI~IIG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~ 353 (589)
+..+++.|-|+ +-+|..+|..|+++|++|+++.|+.++++...+++++
T Consensus 4 ~~~~~~lITGASsGIG~~~A~~lA~~g~~liLvaR~~~kL~~la~~l~~ 52 (265)
T COG0300 4 MKGKTALITGASSGIGAELAKQLARRGYNLILVARREDKLEALAKELED 52 (265)
T ss_pred CCCcEEEEECCCchHHHHHHHHHHHCCCEEEEEeCcHHHHHHHHHHHHH
Confidence 45678999997 8899999999999999999999999999987766553
No 472
>PLN00016 RNA-binding protein; Provisional
Probab=93.59 E-value=0.15 Score=54.02 Aligned_cols=37 Identities=24% Similarity=0.293 Sum_probs=33.2
Q ss_pred ccceEEEE----cC-CCCcHHHHHHHHhCCCeEEEEeCChHH
Q 007805 307 GVRKVAVI----GG-GLMGSGIATAHILNNIYVVLKEVNSEY 343 (589)
Q Consensus 307 ~~~kI~II----G~-G~mG~~iA~~l~~~G~~V~~~d~~~~~ 343 (589)
.+++|.|+ |+ |.+|..++..|++.||+|++.+++++.
T Consensus 51 ~~~~VLVt~~~~GatG~iG~~lv~~L~~~G~~V~~l~R~~~~ 92 (378)
T PLN00016 51 EKKKVLIVNTNSGGHAFIGFYLAKELVKAGHEVTLFTRGKEP 92 (378)
T ss_pred ccceEEEEeccCCCceeEhHHHHHHHHHCCCEEEEEecCCcc
Confidence 45789999 75 999999999999999999999998765
No 473
>PRK12550 shikimate 5-dehydrogenase; Reviewed
Probab=93.58 E-value=0.13 Score=51.82 Aligned_cols=39 Identities=21% Similarity=0.021 Sum_probs=34.8
Q ss_pred ceEEEEcCCCCcHHHHHHHHhCCC-eEEEEeCChHHHHHH
Q 007805 309 RKVAVIGGGLMGSGIATAHILNNI-YVVLKEVNSEYLLKG 347 (589)
Q Consensus 309 ~kI~IIG~G~mG~~iA~~l~~~G~-~V~~~d~~~~~~~~~ 347 (589)
++|.|+|+|-.+.+++..|++.|. +|++++|++++.+..
T Consensus 123 ~~vlilGaGGaarAi~~aL~~~g~~~i~i~nR~~~~a~~l 162 (272)
T PRK12550 123 LVVALRGSGGMAKAVAAALRDAGFTDGTIVARNEKTGKAL 162 (272)
T ss_pred CeEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHH
Confidence 479999999999999999999997 699999999877654
No 474
>COG2344 AT-rich DNA-binding protein [General function prediction only]
Probab=93.55 E-value=0.18 Score=46.79 Aligned_cols=39 Identities=18% Similarity=0.293 Sum_probs=30.6
Q ss_pred ccceEEEEcCCCCcHHHHHH-HH-hCCCeEE-EEeCChHHHH
Q 007805 307 GVRKVAVIGGGLMGSGIATA-HI-LNNIYVV-LKEVNSEYLL 345 (589)
Q Consensus 307 ~~~kI~IIG~G~mG~~iA~~-l~-~~G~~V~-~~d~~~~~~~ 345 (589)
.+-+|.|||+|++|.+++.. +. +.|++++ ++|.+++.+-
T Consensus 83 ~~tnviiVG~GnlG~All~Y~f~~~~~~~iv~~FDv~~~~VG 124 (211)
T COG2344 83 KTTNVIIVGVGNLGRALLNYNFSKKNGMKIVAAFDVDPDKVG 124 (211)
T ss_pred cceeEEEEccChHHHHHhcCcchhhcCceEEEEecCCHHHhC
Confidence 46789999999999999964 33 5677654 8899998643
No 475
>PRK14169 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=93.52 E-value=0.18 Score=50.56 Aligned_cols=72 Identities=17% Similarity=0.292 Sum_probs=52.4
Q ss_pred ceEEEEcC-CCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCccCCCC
Q 007805 309 RKVAVIGG-GLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKD 387 (589)
Q Consensus 309 ~kI~IIG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~ 387 (589)
++|.|||- ...|.++|..|.+.|..|+++......++ +.+++
T Consensus 157 k~vvViGrS~iVGkPla~lL~~~~atVtichs~T~~l~-------------------------------------~~~~~ 199 (282)
T PRK14169 157 KRVVIVGRSNIVGRPLAGLMVNHDATVTIAHSKTRNLK-------------------------------------QLTKE 199 (282)
T ss_pred CEEEEECCCccchHHHHHHHHHCCCEEEEECCCCCCHH-------------------------------------HHHhh
Confidence 68999996 56699999999999999998864322111 33678
Q ss_pred CCEEEEeccCChHHHHHHHHHHHHhCCCCcEEEecCC
Q 007805 388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTS 424 (589)
Q Consensus 388 aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts 424 (589)
||+||.|+.- ..++. .+.+++++++++...
T Consensus 200 ADIvI~AvG~-----p~~i~--~~~vk~GavVIDvGi 229 (282)
T PRK14169 200 ADILVVAVGV-----PHFIG--ADAVKPGAVVIDVGI 229 (282)
T ss_pred CCEEEEccCC-----cCccC--HHHcCCCcEEEEeec
Confidence 9999999962 22322 246889999887553
No 476
>cd01486 Apg7 Apg7 is an E1-like protein, that activates two different ubiquitin-like proteins, Apg12 and Apg8, and assigns them to specific E2 enzymes, Apg10 and Apg3, respectively. This leads to the covalent conjugation of Apg8 with phosphatidylethanolamine, an important step in autophagy. Autophagy is a dynamic membrane phenomenon for bulk protein degradation in the lysosome/vacuole.
Probab=93.49 E-value=0.032 Score=56.25 Aligned_cols=31 Identities=16% Similarity=0.363 Sum_probs=28.0
Q ss_pred eEEEEcCCCCcHHHHHHHHhCCC-eEEEEeCC
Q 007805 310 KVAVIGGGLMGSGIATAHILNNI-YVVLKEVN 340 (589)
Q Consensus 310 kI~IIG~G~mG~~iA~~l~~~G~-~V~~~d~~ 340 (589)
||.|||+|..|+.+|..|+..|. +++++|.+
T Consensus 1 kVLIvGaGGLGs~vA~~La~aGVg~ItlvD~D 32 (307)
T cd01486 1 KCLLLGAGTLGCNVARNLLGWGVRHITFVDSG 32 (307)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCCeEEEECCC
Confidence 68999999999999999999998 78888854
No 477
>PRK05868 hypothetical protein; Validated
Probab=93.46 E-value=0.057 Score=57.10 Aligned_cols=36 Identities=19% Similarity=0.188 Sum_probs=33.1
Q ss_pred cceEEEEcCCCCcHHHHHHHHhCCCeEEEEeCChHH
Q 007805 308 VRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEY 343 (589)
Q Consensus 308 ~~kI~IIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~ 343 (589)
|++|.|||+|.-|.+.|..|+++|++|+++|+.++.
T Consensus 1 ~~~V~IvGgG~aGl~~A~~L~~~G~~v~viE~~~~~ 36 (372)
T PRK05868 1 MKTVVVSGASVAGTAAAYWLGRHGYSVTMVERHPGL 36 (372)
T ss_pred CCeEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Confidence 578999999999999999999999999999988653
No 478
>CHL00194 ycf39 Ycf39; Provisional
Probab=93.46 E-value=0.12 Score=53.35 Aligned_cols=35 Identities=23% Similarity=0.211 Sum_probs=31.9
Q ss_pred eEEEEcC-CCCcHHHHHHHHhCCCeEEEEeCChHHH
Q 007805 310 KVAVIGG-GLMGSGIATAHILNNIYVVLKEVNSEYL 344 (589)
Q Consensus 310 kI~IIG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~ 344 (589)
||.|+|+ |.+|+.++..|.++||+|++.+|+++..
T Consensus 2 kIlVtGatG~iG~~lv~~Ll~~g~~V~~l~R~~~~~ 37 (317)
T CHL00194 2 SLLVIGATGTLGRQIVRQALDEGYQVRCLVRNLRKA 37 (317)
T ss_pred EEEEECCCcHHHHHHHHHHHHCCCeEEEEEcChHHh
Confidence 7999996 9999999999999999999999997643
No 479
>PRK14166 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=93.45 E-value=0.19 Score=50.45 Aligned_cols=71 Identities=15% Similarity=0.214 Sum_probs=52.5
Q ss_pred ceEEEEcC-CCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCccCCCC
Q 007805 309 RKVAVIGG-GLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKD 387 (589)
Q Consensus 309 ~kI~IIG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~ 387 (589)
++|.|||- ...|.++|..|.+.|..|+++......++ +.++.
T Consensus 158 k~vvVvGrS~iVGkPla~lL~~~~atVt~chs~T~nl~-------------------------------------~~~~~ 200 (282)
T PRK14166 158 KDAVIIGASNIVGRPMATMLLNAGATVSVCHIKTKDLS-------------------------------------LYTRQ 200 (282)
T ss_pred CEEEEECCCCcchHHHHHHHHHCCCEEEEeCCCCCCHH-------------------------------------HHHhh
Confidence 68999996 56699999999999999998875432221 33678
Q ss_pred CCEEEEeccCChHHHHHHHHHHHHhCCCCcEEEecC
Q 007805 388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNT 423 (589)
Q Consensus 388 aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~t 423 (589)
||+||.|+.- ..++. .+.+++++++++..
T Consensus 201 ADIvIsAvGk-----p~~i~--~~~vk~GavVIDvG 229 (282)
T PRK14166 201 ADLIIVAAGC-----VNLLR--SDMVKEGVIVVDVG 229 (282)
T ss_pred CCEEEEcCCC-----cCccC--HHHcCCCCEEEEec
Confidence 9999999962 22322 24688999998754
No 480
>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family. Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.
Probab=93.43 E-value=0.82 Score=44.25 Aligned_cols=103 Identities=16% Similarity=0.037 Sum_probs=59.5
Q ss_pred ceEEEEcCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccc-cCCccC---
Q 007805 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKG-VLDYSE--- 384 (589)
Q Consensus 309 ~kI~IIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~-~~~~~~--- 384 (589)
.+|-++|+|. +.-|..|+++|++|+.+|.++..++.+.++...... ....+... .. .-.++++ ..|...
T Consensus 36 ~rvLd~GCG~--G~da~~LA~~G~~V~gvD~S~~Ai~~~~~~~~~~~~-~~~~~~~~---~~-~~~~v~~~~~D~~~~~~ 108 (213)
T TIGR03840 36 ARVFVPLCGK--SLDLAWLAEQGHRVLGVELSEIAVEQFFAENGLTPT-VTQQGEFT---RY-RAGNIEIFCGDFFALTA 108 (213)
T ss_pred CeEEEeCCCc--hhHHHHHHhCCCeEEEEeCCHHHHHHHHHHcCCCcc-eeccccce---ee-ecCceEEEEccCCCCCc
Confidence 4899999998 577788899999999999999998875221000000 00000000 00 0011221 222211
Q ss_pred --CCCCCEEEEec---cCChHHHHHHHHHHHHhCCCCcE
Q 007805 385 --FKDVDMVIEAV---IESVPLKQKIFSELEKACPPHCI 418 (589)
Q Consensus 385 --~~~aDlVIeav---pe~~~~k~~v~~~l~~~~~~~~i 418 (589)
...-|.|+++. .=.++....+++.+...++|+..
T Consensus 109 ~~~~~fD~i~D~~~~~~l~~~~R~~~~~~l~~lLkpgG~ 147 (213)
T TIGR03840 109 ADLGPVDAVYDRAALIALPEEMRQRYAAHLLALLPPGAR 147 (213)
T ss_pred ccCCCcCEEEechhhccCCHHHHHHHHHHHHHHcCCCCe
Confidence 12347777642 11256677889999999999864
No 481
>PRK00711 D-amino acid dehydrogenase small subunit; Validated
Probab=93.43 E-value=0.068 Score=57.28 Aligned_cols=33 Identities=21% Similarity=0.251 Sum_probs=31.1
Q ss_pred eEEEEcCCCCcHHHHHHHHhCCCeEEEEeCChH
Q 007805 310 KVAVIGGGLMGSGIATAHILNNIYVVLKEVNSE 342 (589)
Q Consensus 310 kI~IIG~G~mG~~iA~~l~~~G~~V~~~d~~~~ 342 (589)
+|.|||+|.+|.++|..|+++|++|+++|++..
T Consensus 2 ~v~IVG~Gi~Gls~A~~l~~~g~~V~vle~~~~ 34 (416)
T PRK00711 2 RVVVLGSGVIGVTSAWYLAQAGHEVTVIDRQPG 34 (416)
T ss_pred EEEEECCcHHHHHHHHHHHHCCCEEEEEeCCCc
Confidence 799999999999999999999999999999754
No 482
>PF01039 Carboxyl_trans: Carboxyl transferase domain; InterPro: IPR000022 Members in this domain include biotin dependent carboxylases [, ]. The carboxyl transferase domain carries out the following reaction; transcarboxylation from biotin to an acceptor molecule. There are two recognised types of carboxyl transferase. One of them uses acyl-CoA and the other uses 2-oxo acid as the acceptor molecule of carbon dioxide. All of the members in this family utilise acyl-CoA as the acceptor molecule.; GO: 0016874 ligase activity; PDB: 2F9Y_B 1XO6_B 1XNV_B 3MFM_C 3IBB_A 1XNW_F 3IAV_B 1XNY_A 3IB9_A 3U9S_F ....
Probab=93.42 E-value=0.48 Score=51.98 Aligned_cols=166 Identities=17% Similarity=0.136 Sum_probs=98.3
Q ss_pred EEeCCCCC--CCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCCcCCCCchhhhhccCCCcccccchhHHHHHHHHHH
Q 007805 18 ITLINPPV--NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIE 95 (589)
Q Consensus 18 i~l~~p~~--N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 95 (589)
|.=|+|.. -+++++-.+...+.++.++.. ++-.|.|.-. +.|..|-+-. .....+...+++ .++.
T Consensus 298 iian~~~~~~G~~~~~~a~K~arfi~lcd~~-~iPlv~l~dt-pGf~~g~~~E----------~~g~~~~ga~~~-~a~~ 364 (493)
T PF01039_consen 298 IIANNPRQRAGALDPDGARKAARFIRLCDAF-NIPLVTLVDT-PGFMPGPEAE----------RAGIIRAGARLL-YALA 364 (493)
T ss_dssp EEEE-TTCGGGEB-HHHHHHHHHHHHHHHHT-T--EEEEEEE-CEB--SHHHH----------HTTHHHHHHHHH-HHHH
T ss_pred EEEeccccccccCChHHHHHHHHHHHHHHhh-CCceEEEeec-ccccccchhh----------hcchHHHHHHHH-HHHH
Confidence 34456643 379999999999999999874 5666766533 3354444322 112234444666 7789
Q ss_pred hCCCcEEEEeCCcccchhhHHhhhc----CEEEEeCCceEeccccccCCCCChhhhhhHhhhc-------C--HHH-HHH
Q 007805 96 DCKKPIVAAVEGLALGGGLELAMGC----HARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLV-------G--LSK-AIE 161 (589)
Q Consensus 96 ~~~kp~iaav~G~a~GgG~~lala~----D~~ia~~~a~~~~pe~~~Gl~p~~g~~~~l~~~~-------G--~~~-a~~ 161 (589)
+++.|+|..|-|.++|||..-.... |+++|.++++++ .+++-++...+-+.- | ... ..+
T Consensus 365 ~~~vP~itvi~~~~~Gga~~am~~~~~~~~~~~Awp~a~~~-------vm~~e~a~~i~~~~~~~~~~~~~~~~~~~~~~ 437 (493)
T PF01039_consen 365 EATVPKITVIVRKAYGGAYYAMCGRGYGPDFVFAWPTAEIG-------VMGPEGAASILYRDELEAAEAEGADPEAQRAE 437 (493)
T ss_dssp HH-S-EEEEEEEEEEHHHHHHTTGGGGTTSEEEEETT-EEE-------SS-HHHHHHHHTHHHHHHSCHCCHSHHHHHHH
T ss_pred cCCCCEEEEEeCCccCcchhhhcccccchhhhhhhhcceee-------ecChhhhheeeehhhhhhhhcccchhHHHHHH
Confidence 9999999999999999887544444 788777776665 544444443332211 1 000 011
Q ss_pred HH-H-cCCCCCHHHHHHcCCcceecCchHHHHHHHHHHHHHHhc
Q 007805 162 MM-L-LSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAAR 203 (589)
Q Consensus 162 l~-l-tg~~~~a~~A~~~Glv~~vv~~~~l~~~a~~~a~~la~~ 203 (589)
.+ - .-+..++..+.+.|++|.|+++.+...........+.++
T Consensus 438 ~~~~~~~~~~~~~~~a~~~~~D~ii~p~~tR~~l~~~l~~~~~~ 481 (493)
T PF01039_consen 438 KIAEYEDELSSPYRAASRGYVDDIIDPAETRKVLIAALEMLWQK 481 (493)
T ss_dssp HHHHHHHHHSSHHHHHHTTSSSEESSGGGHHHHHHHHHHHHTTS
T ss_pred HHHHHHHhcCCHHHHHhcCCCCCccCHHHHHHHHHHHHHHHHhC
Confidence 11 1 112258899999999999999999877666666554444
No 483
>PRK07877 hypothetical protein; Provisional
Probab=93.36 E-value=0.15 Score=58.06 Aligned_cols=32 Identities=19% Similarity=0.374 Sum_probs=28.3
Q ss_pred ceEEEEcCCCCcHHHHHHHHhCCC--eEEEEeCCh
Q 007805 309 RKVAVIGGGLMGSGIATAHILNNI--YVVLKEVNS 341 (589)
Q Consensus 309 ~kI~IIG~G~mG~~iA~~l~~~G~--~V~~~d~~~ 341 (589)
.+|+|||+| .|+.+|..|+..|. +++++|.+.
T Consensus 108 ~~V~IvG~G-lGs~~a~~LaraGvvG~l~lvD~D~ 141 (722)
T PRK07877 108 LRIGVVGLS-VGHAIAHTLAAEGLCGELRLADFDT 141 (722)
T ss_pred CCEEEEEec-HHHHHHHHHHHccCCCeEEEEcCCE
Confidence 579999999 89999999999995 888988763
No 484
>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional
Probab=93.32 E-value=0.18 Score=49.97 Aligned_cols=33 Identities=18% Similarity=0.318 Sum_probs=29.8
Q ss_pred ceEEEEcCCCCcHHHHHHHHhCCC-eEEEEeCCh
Q 007805 309 RKVAVIGGGLMGSGIATAHILNNI-YVVLKEVNS 341 (589)
Q Consensus 309 ~kI~IIG~G~mG~~iA~~l~~~G~-~V~~~d~~~ 341 (589)
.||.|||+|-.|+.++..|+..|. +++++|.+.
T Consensus 33 ~~VliiG~GglGs~va~~La~~Gvg~i~lvD~D~ 66 (245)
T PRK05690 33 ARVLVVGLGGLGCAASQYLAAAGVGTLTLVDFDT 66 (245)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCE
Confidence 589999999999999999999997 788888763
No 485
>PRK14171 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=93.31 E-value=0.22 Score=50.15 Aligned_cols=71 Identities=18% Similarity=0.279 Sum_probs=51.6
Q ss_pred ceEEEEcC-CCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCccCCCC
Q 007805 309 RKVAVIGG-GLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKD 387 (589)
Q Consensus 309 ~kI~IIG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~ 387 (589)
++|.|||- ...|.++|..|.+.|..|+++......+. +.++.
T Consensus 160 K~vvViGrS~iVGkPla~lL~~~~ATVtichs~T~~L~-------------------------------------~~~~~ 202 (288)
T PRK14171 160 KNVVIIGRSNIVGKPLSALLLKENCSVTICHSKTHNLS-------------------------------------SITSK 202 (288)
T ss_pred CEEEEECCCCcchHHHHHHHHHCCCEEEEeCCCCCCHH-------------------------------------HHHhh
Confidence 68999996 56699999999999999998874321111 33678
Q ss_pred CCEEEEeccCChHHHHHHHHHHHHhCCCCcEEEecC
Q 007805 388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNT 423 (589)
Q Consensus 388 aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~t 423 (589)
||+||.|+.-. .++. .+.+++++++++..
T Consensus 203 ADIvV~AvGkp-----~~i~--~~~vk~GavVIDvG 231 (288)
T PRK14171 203 ADIVVAAIGSP-----LKLT--AEYFNPESIVIDVG 231 (288)
T ss_pred CCEEEEccCCC-----CccC--HHHcCCCCEEEEee
Confidence 99999999622 2222 24688999988654
No 486
>TIGR03736 PRTRC_ThiF PRTRC system ThiF family protein. A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. This family is the PRTRC system ThiF family protein.
Probab=93.27 E-value=0.22 Score=49.09 Aligned_cols=98 Identities=16% Similarity=0.115 Sum_probs=54.7
Q ss_pred ceEEEEcCCCCcHHHHHHHHhCC-----------CeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcc-
Q 007805 309 RKVAVIGGGLMGSGIATAHILNN-----------IYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKML- 376 (589)
Q Consensus 309 ~kI~IIG~G~mG~~iA~~l~~~G-----------~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i- 376 (589)
.||.|||+|-.|+.++..|++.| .+++++|.+.=........ .+. ...-|+-..+.....+..+
T Consensus 12 ~~V~vvG~GGlGs~v~~~Lar~G~a~~~~G~~~g~~i~lvD~D~Ve~sNLnRQ---lf~-~~dVG~~Ka~v~~~ri~~~~ 87 (244)
T TIGR03736 12 VSVVLVGAGGTGSQVIAGLARLHHALKALGHPGGLAVTVYDDDTVSEANVGRQ---AFY-PADVGQNKAIVLVNRLNQAM 87 (244)
T ss_pred CeEEEEcCChHHHHHHHHHHHccccccccCCCCCCEEEEECCCEEccchhhcc---cCC-hhHCCcHHHHHHHHHHHhcc
Confidence 57999999999999999999864 2889999764221111100 000 0112222222222222211
Q ss_pred ----cccCC----ccCCCCCCEEEEeccCChHHHHHHHHHHHH
Q 007805 377 ----KGVLD----YSEFKDVDMVIEAVIESVPLKQKIFSELEK 411 (589)
Q Consensus 377 ----~~~~~----~~~~~~aDlVIeavpe~~~~k~~v~~~l~~ 411 (589)
..... .+.+.++|+||.|+- +...+..+.+....
T Consensus 88 ~~~i~a~~~~~~~~~~~~~~DiVi~avD-n~~aR~~l~~~~~~ 129 (244)
T TIGR03736 88 GTDWTAHPERVERSSTLHRPDIVIGCVD-NRAARLAILRAFEG 129 (244)
T ss_pred CceEEEEEeeeCchhhhcCCCEEEECCC-CHHHHHHHHHHHHH
Confidence 11110 123567899999994 66666666666544
No 487
>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=93.26 E-value=0.13 Score=56.21 Aligned_cols=39 Identities=28% Similarity=0.270 Sum_probs=34.3
Q ss_pred CCccceEEEEcCCCCcHHHHHHHHhCCCeEEEEeCChHH
Q 007805 305 PRGVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEY 343 (589)
Q Consensus 305 ~~~~~kI~IIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~ 343 (589)
.-..++|.|+|+|..|.++|..|.+.|++|+++|+++..
T Consensus 12 ~~~~~~v~v~G~G~sG~a~a~~L~~~G~~V~~~D~~~~~ 50 (473)
T PRK00141 12 QELSGRVLVAGAGVSGRGIAAMLSELGCDVVVADDNETA 50 (473)
T ss_pred cccCCeEEEEccCHHHHHHHHHHHHCCCEEEEECCChHH
Confidence 345578999999999999999999999999999987543
No 488
>PRK07236 hypothetical protein; Provisional
Probab=93.18 E-value=0.087 Score=55.96 Aligned_cols=37 Identities=24% Similarity=0.075 Sum_probs=33.8
Q ss_pred CccceEEEEcCCCCcHHHHHHHHhCCCeEEEEeCChH
Q 007805 306 RGVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSE 342 (589)
Q Consensus 306 ~~~~kI~IIG~G~mG~~iA~~l~~~G~~V~~~d~~~~ 342 (589)
|+..+|.|||+|.-|.+.|..|++.|++|+++|+.+.
T Consensus 4 ~~~~~ViIVGaG~aGl~~A~~L~~~G~~v~v~E~~~~ 40 (386)
T PRK07236 4 MSGPRAVVIGGSLGGLFAALLLRRAGWDVDVFERSPT 40 (386)
T ss_pred CCCCeEEEECCCHHHHHHHHHHHhCCCCEEEEecCCC
Confidence 4557899999999999999999999999999998864
No 489
>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB. This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).
Probab=93.16 E-value=0.17 Score=50.04 Aligned_cols=34 Identities=15% Similarity=0.292 Sum_probs=30.4
Q ss_pred ceEEEEcCCCCcHHHHHHHHhCCC-eEEEEeCChH
Q 007805 309 RKVAVIGGGLMGSGIATAHILNNI-YVVLKEVNSE 342 (589)
Q Consensus 309 ~kI~IIG~G~mG~~iA~~l~~~G~-~V~~~d~~~~ 342 (589)
.||.|+|+|-+|+.+|..|+..|. +++++|.+.-
T Consensus 25 ~~VlvvG~GglGs~va~~La~~Gvg~i~lvD~D~v 59 (240)
T TIGR02355 25 SRVLIVGLGGLGCAASQYLAAAGVGNLTLLDFDTV 59 (240)
T ss_pred CcEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCcc
Confidence 579999999999999999999997 7888887643
No 490
>TIGR01381 E1_like_apg7 E1-like protein-activating enzyme Gsa7p/Apg7p. This model represents a family of eukaryotic proteins found in animals, plants, and yeasts, including Apg7p (YHR171W) from Saccharomyces cerevisiae and GSA7 from Pichia pastoris. Members are about 650 to 700 residues in length and include a central domain of about 150 residues shared with the ThiF/MoeB/HesA family of proteins. A low level of similarity to ubiquitin-activating enzyme E1 is described in a paper on peroxisome autophagy mediated by GSA7, and is the basis of the name ubiquitin activating enzyme E1-like protein. Members of the family appear to be involved in protein lipidation events analogous to ubiquitination and required for membrane fusion events during autophagy.
Probab=93.14 E-value=0.055 Score=59.87 Aligned_cols=32 Identities=22% Similarity=0.372 Sum_probs=29.1
Q ss_pred ceEEEEcCCCCcHHHHHHHHhCCC-eEEEEeCC
Q 007805 309 RKVAVIGGGLMGSGIATAHILNNI-YVVLKEVN 340 (589)
Q Consensus 309 ~kI~IIG~G~mG~~iA~~l~~~G~-~V~~~d~~ 340 (589)
.||.|||+|..|+.+|..|+..|+ +++++|.+
T Consensus 339 ~kVLIvGaGGLGs~VA~~La~~GVg~ItlVD~D 371 (664)
T TIGR01381 339 LKVLLLGAGTLGCNVARCLIGWGVRHITFVDNG 371 (664)
T ss_pred CeEEEECCcHHHHHHHHHHHHcCCCeEEEEcCC
Confidence 579999999999999999999998 78888864
No 491
>PRK14174 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=93.13 E-value=0.27 Score=49.79 Aligned_cols=72 Identities=15% Similarity=0.291 Sum_probs=52.3
Q ss_pred ceEEEEcC-CCCcHHHHHHHHh----CCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCcc
Q 007805 309 RKVAVIGG-GLMGSGIATAHIL----NNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYS 383 (589)
Q Consensus 309 ~kI~IIG~-G~mG~~iA~~l~~----~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~ 383 (589)
++|.|||- ...|.++|..|.+ .|..|+....+...++ +
T Consensus 160 k~vvViGrS~iVG~Pla~lL~~~~~~~~atVt~~hs~t~~l~-------------------------------------~ 202 (295)
T PRK14174 160 KHCVVVGRSNIVGKPMANLMLQKLKESNCTVTICHSATKDIP-------------------------------------S 202 (295)
T ss_pred CEEEEECCCCcchHHHHHHHHhccccCCCEEEEEeCCchhHH-------------------------------------H
Confidence 68999996 5669999999987 6889998886654332 3
Q ss_pred CCCCCCEEEEeccCChHHHHHHHHHHHHhCCCCcEEEecCC
Q 007805 384 EFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTS 424 (589)
Q Consensus 384 ~~~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts 424 (589)
.++.||+||-|++-. .++. .+.+++++++++...
T Consensus 203 ~~~~ADIvI~Avg~~-----~li~--~~~vk~GavVIDVgi 236 (295)
T PRK14174 203 YTRQADILIAAIGKA-----RFIT--ADMVKPGAVVIDVGI 236 (295)
T ss_pred HHHhCCEEEEecCcc-----CccC--HHHcCCCCEEEEeec
Confidence 367899999999632 2222 234689999887553
No 492
>KOG1502 consensus Flavonol reductase/cinnamoyl-CoA reductase [Defense mechanisms]
Probab=93.11 E-value=0.18 Score=51.36 Aligned_cols=40 Identities=28% Similarity=0.221 Sum_probs=35.5
Q ss_pred ccceEEEEcC-CCCcHHHHHHHHhCCCeEEEEeCChHHHHH
Q 007805 307 GVRKVAVIGG-GLMGSGIATAHILNNIYVVLKEVNSEYLLK 346 (589)
Q Consensus 307 ~~~kI~IIG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~ 346 (589)
..++|+|-|+ |.+|+.|...|+++||.|...-|+++..+.
T Consensus 5 ~~~~VcVTGAsGfIgswivk~LL~rGY~V~gtVR~~~~~k~ 45 (327)
T KOG1502|consen 5 EGKKVCVTGASGFIGSWIVKLLLSRGYTVRGTVRDPEDEKK 45 (327)
T ss_pred CCcEEEEeCCchHHHHHHHHHHHhCCCEEEEEEcCcchhhh
Confidence 4578999997 999999999999999999999999887433
No 493
>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G ....
Probab=93.10 E-value=0.081 Score=41.06 Aligned_cols=30 Identities=27% Similarity=0.290 Sum_probs=27.0
Q ss_pred EEcCCCCcHHHHHHHHhCCCeEEEEeCChH
Q 007805 313 VIGGGLMGSGIATAHILNNIYVVLKEVNSE 342 (589)
Q Consensus 313 IIG~G~mG~~iA~~l~~~G~~V~~~d~~~~ 342 (589)
|||+|.-|.+.|..|++.|++|+++|.++.
T Consensus 1 IiGaG~sGl~aA~~L~~~g~~v~v~E~~~~ 30 (68)
T PF13450_consen 1 IIGAGISGLAAAYYLAKAGYRVTVFEKNDR 30 (68)
T ss_dssp EES-SHHHHHHHHHHHHTTSEEEEEESSSS
T ss_pred CEeeCHHHHHHHHHHHHCCCcEEEEecCcc
Confidence 899999999999999999999999998743
No 494
>PLN02820 3-methylcrotonyl-CoA carboxylase, beta chain
Probab=93.09 E-value=1.6 Score=48.41 Aligned_cols=157 Identities=15% Similarity=0.091 Sum_probs=98.6
Q ss_pred CCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCCcCCCCchhhhhccCCCcccccchhHHHHHHHHHHhCCCcEEEEe
Q 007805 26 NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAV 105 (589)
Q Consensus 26 N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kp~iaav 105 (589)
-+++.+-.+...+.++.++.- ++-+|-|.-. +.|..|.+-+. .-..+...+++ .++.....|.|++|
T Consensus 380 g~l~~~~a~Kaarfi~lc~~~-~iPlv~l~D~-pGf~~G~~~E~----------~G~~~~~a~l~-~A~a~~~VP~isvi 446 (569)
T PLN02820 380 GILFTESALKGAHFIELCAQR-GIPLLFLQNI-TGFMVGSRSEA----------SGIAKAGAKMV-MAVACAKVPKITII 446 (569)
T ss_pred CccCHHHHHHHHHHHHHHHhc-CCCEEEEEEC-CCCCCCHHHHH----------hhHHHHHHHHH-HHHHhCCCCEEEEE
Confidence 468888888889988888753 5666666433 33666654332 11233344555 67889999999999
Q ss_pred CCcccchhhHHhh----hcCEEEEeCCceEeccccccCCCCChhhhhhHhhh-c------------CHHHHH-HH--HHc
Q 007805 106 EGLALGGGLELAM----GCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRL-V------------GLSKAI-EM--MLL 165 (589)
Q Consensus 106 ~G~a~GgG~~lal----a~D~~ia~~~a~~~~pe~~~Gl~p~~g~~~~l~~~-~------------G~~~a~-~l--~lt 165 (589)
=|.|+|+|..-+. ..|++++.+++ .+|.++.-++...+.+. + -...+. +. -..
T Consensus 447 ~g~a~G~g~~aM~g~~~~~d~~~awp~A-------~i~vmg~e~aa~il~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~ 519 (569)
T PLN02820 447 VGGSFGAGNYGMCGRAYSPNFLFMWPNA-------RIGVMGGAQAAGVLAQIERENKKRQGIQWSKEEEEAFKAKTVEAY 519 (569)
T ss_pred ECCcchHHHHHhcCcCCCCCEEEECCCC-------eEEecCHHHHHHHHHHHHhhhhhhccccCCccHHHHHHHHHHHHH
Confidence 9999998765443 55676666555 45566655555544331 1 111111 11 112
Q ss_pred CCCCCHHHHHHcCCcceecCchHHHHHHHHHHHHHHh
Q 007805 166 SKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAA 202 (589)
Q Consensus 166 g~~~~a~~A~~~Glv~~vv~~~~l~~~a~~~a~~la~ 202 (589)
-+..++-.|-+.|+||.|++|.+.........+....
T Consensus 520 ~~~~~p~~aa~~~~vD~VIdP~dTR~~l~~~l~~~~~ 556 (569)
T PLN02820 520 EREANPYYSTARLWDDGVIDPADTRRVLGLCLSAALN 556 (569)
T ss_pred HHhCCHHHHHHcCCcCcccCHHHHHHHHHHHHHHhhc
Confidence 2355778889999999999998877665555544433
No 495
>PRK14182 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=93.04 E-value=0.26 Score=49.43 Aligned_cols=72 Identities=13% Similarity=0.223 Sum_probs=52.5
Q ss_pred ceEEEEcC-CCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCccCCCC
Q 007805 309 RKVAVIGG-GLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKD 387 (589)
Q Consensus 309 ~kI~IIG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~ 387 (589)
++|.|||- ...|.++|..|.++|..|+++......++ +.++.
T Consensus 158 k~vvViGrS~iVGkPla~lL~~~~AtVtichs~T~nl~-------------------------------------~~~~~ 200 (282)
T PRK14182 158 KRALVVGRSNIVGKPMAMMLLERHATVTIAHSRTADLA-------------------------------------GEVGR 200 (282)
T ss_pred CEEEEECCCCcchHHHHHHHHHCCCEEEEeCCCCCCHH-------------------------------------HHHhh
Confidence 68999996 56699999999999999998864322111 34678
Q ss_pred CCEEEEeccCChHHHHHHHHHHHHhCCCCcEEEecCC
Q 007805 388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTS 424 (589)
Q Consensus 388 aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts 424 (589)
||+||.|+.- + .++. .+.+++++++++...
T Consensus 201 ADIvI~AvGk-~----~~i~--~~~ik~gaiVIDvGi 230 (282)
T PRK14182 201 ADILVAAIGK-A----ELVK--GAWVKEGAVVIDVGM 230 (282)
T ss_pred CCEEEEecCC-c----CccC--HHHcCCCCEEEEeec
Confidence 9999999962 2 2222 246889999887543
No 496
>PRK05854 short chain dehydrogenase; Provisional
Probab=93.03 E-value=1.3 Score=45.41 Aligned_cols=45 Identities=20% Similarity=0.202 Sum_probs=37.1
Q ss_pred ccceEEEEcC-CCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHH
Q 007805 307 GVRKVAVIGG-GLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTI 351 (589)
Q Consensus 307 ~~~kI~IIG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~ 351 (589)
.-+++.|.|+ +-+|..+|..|++.|++|++.++++++.+++.+.+
T Consensus 13 ~gk~~lITGas~GIG~~~a~~La~~G~~Vil~~R~~~~~~~~~~~l 58 (313)
T PRK05854 13 SGKRAVVTGASDGLGLGLARRLAAAGAEVILPVRNRAKGEAAVAAI 58 (313)
T ss_pred CCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHH
Confidence 3467778886 77899999999999999999999998877665443
No 497
>PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated
Probab=92.99 E-value=1.3 Score=43.07 Aligned_cols=40 Identities=23% Similarity=0.155 Sum_probs=35.1
Q ss_pred cceEEEEcC-CCCcHHHHHHHHhCCCeEEEEeCChHHHHHH
Q 007805 308 VRKVAVIGG-GLMGSGIATAHILNNIYVVLKEVNSEYLLKG 347 (589)
Q Consensus 308 ~~kI~IIG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~ 347 (589)
.++|.|.|+ |.+|..++..|+++|++|++++++++..+..
T Consensus 5 ~~~ilItGasg~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~ 45 (246)
T PRK05653 5 GKTALVTGASRGIGRAIALRLAADGAKVVIYDSNEEAAEAL 45 (246)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCChhHHHHH
Confidence 468999996 9999999999999999999999998766543
No 498
>cd01490 Ube1_repeat2 Ubiquitin activating enzyme (E1), repeat 2. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the second repeat of Ub-E1.
Probab=92.96 E-value=0.37 Score=51.53 Aligned_cols=163 Identities=13% Similarity=0.071 Sum_probs=79.5
Q ss_pred eEEEEcCCCCcHHHHHHHHhCCC------eEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhc------cc
Q 007805 310 KVAVIGGGLMGSGIATAHILNNI------YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKM------LK 377 (589)
Q Consensus 310 kI~IIG~G~mG~~iA~~l~~~G~------~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~------i~ 377 (589)
||.|||+|-+|+.++..|+..|+ +++++|.+.=....... +.+-..-.-|+-..+.+...+.. +.
T Consensus 1 kVlvVGaGGlGcE~lKnLal~Gv~~g~~G~I~IvD~D~Ie~SNLnR---QfLf~~~dIGk~Ka~vAa~~l~~lNp~v~I~ 77 (435)
T cd01490 1 KVFLVGAGAIGCELLKNFALMGVGTGESGEITVTDMDNIEKSNLNR---QFLFRPHDVGKPKSEVAAAAVKAMNPDLKIT 77 (435)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCCcCCCCeEEEECCCCccccccCc---CccCChhHcCcHHHHHHHHHHHHHCCCCEEE
Confidence 58999999999999999999998 89999976432111100 00000001111111111111111 11
Q ss_pred ccC--------C---ccCCCCCCEEEEeccCChHHHHHHHHHHHHhCCCCcEEEecCCCCCHHHHhcccCCCCcEEEecC
Q 007805 378 GVL--------D---YSEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHF 446 (589)
Q Consensus 378 ~~~--------~---~~~~~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~~~~~~~~~~~~~r~ig~h~ 446 (589)
... + .+-+++.|+||.|+- +++.+..+-+....+- -.+|-+.+.+..-. ..-..+.....-....
T Consensus 78 a~~~~v~~~~~~~~~~~f~~~~DvVi~alD-n~~aR~~vn~~C~~~~--iPli~~gt~G~~G~-v~v~iP~~te~y~~~~ 153 (435)
T cd01490 78 ALQNRVGPETEHIFNDEFWEKLDGVANALD-NVDARMYVDRRCVYYR--KPLLESGTLGTKGN-TQVVIPHLTESYSSSR 153 (435)
T ss_pred EEecccChhhhhhhhHHHhcCCCEEEECCC-CHHHHHHHHHHHHHhC--CCEEEEecccceeE-EEEEeCCCCCCccCCC
Confidence 100 0 122577899999984 4554443333322221 12333433332111 1111111001111122
Q ss_pred CCCCCCCCeeeEecCCCCCHHHHHHHHHHHHHc
Q 007805 447 FSPAHVMPLLEIVRTERTSAQVILDLMTVGKII 479 (589)
Q Consensus 447 ~~p~~~~~lveiv~~~~t~~e~~~~~~~l~~~l 479 (589)
..+....|...+-..|...+..+++++.+++.+
T Consensus 154 ~p~~~~~P~Ctl~~~P~~~eHcI~wA~~~F~~l 186 (435)
T cd01490 154 DPPEKSIPLCTLKNFPNAIEHTIQWARDEFEGL 186 (435)
T ss_pred CCCCCCCCCccccCCCCCchHHHHHHHHHHHHH
Confidence 223334566667777888888999999987764
No 499
>PF13766 ECH_C: 2-enoyl-CoA Hydratase C-terminal region; PDB: 3JU1_A 3BPT_A.
Probab=92.93 E-value=0.25 Score=42.96 Aligned_cols=52 Identities=8% Similarity=0.028 Sum_probs=40.0
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHhHHHHHHH-h-hhccCCC
Q 007805 245 QACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFA-Q-RATSKVP 296 (589)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~af~~-~-r~~~~~~ 296 (589)
..+.+.++++...++.+.++.|...-..++..+|+.|||++-+= | +.|+|.|
T Consensus 49 ~vt~~~l~~~~~~sl~e~l~~E~~~a~~~~~~~DF~EGVRA~LIDKd~~P~W~p 102 (118)
T PF13766_consen 49 KVTFEQLRRGRNLSLAECLRMEYRLASRCMRHPDFAEGVRALLIDKDKNPKWSP 102 (118)
T ss_dssp HHHHHHHHCCTTS-HHHHHHHHHHHHHHHHCCSCHHHHHHHHTTS-------SS
T ss_pred HHHHHHHHHhhhCCHHHHHHHHHHHHHHHhccchHHHHHHHHHhcCCCCCCCCC
Confidence 35567888999999999999999999999999999999999874 3 5566655
No 500
>PRK14193 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=92.90 E-value=0.27 Score=49.42 Aligned_cols=72 Identities=18% Similarity=0.204 Sum_probs=52.3
Q ss_pred ceEEEEcC-CCCcHHHHHHHHh--CCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCccCC
Q 007805 309 RKVAVIGG-GLMGSGIATAHIL--NNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEF 385 (589)
Q Consensus 309 ~kI~IIG~-G~mG~~iA~~l~~--~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~ 385 (589)
++|.|||- +..|.++|..|.+ ++..|+++......++ +.+
T Consensus 159 k~vvViGrS~~VGkPla~lL~~~~~~atVtvchs~T~~l~-------------------------------------~~~ 201 (284)
T PRK14193 159 AHVVVIGRGVTVGRPIGLLLTRRSENATVTLCHTGTRDLA-------------------------------------AHT 201 (284)
T ss_pred CEEEEECCCCcchHHHHHHHhhccCCCEEEEeCCCCCCHH-------------------------------------HHH
Confidence 68999996 6779999999998 6889998875422111 346
Q ss_pred CCCCEEEEeccCChHHHHHHHHHHHHhCCCCcEEEecCC
Q 007805 386 KDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTS 424 (589)
Q Consensus 386 ~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts 424 (589)
+.||+||.|+.-. .++. .+++++++++++...
T Consensus 202 k~ADIvV~AvGkp-----~~i~--~~~ik~GavVIDvGi 233 (284)
T PRK14193 202 RRADIIVAAAGVA-----HLVT--ADMVKPGAAVLDVGV 233 (284)
T ss_pred HhCCEEEEecCCc-----CccC--HHHcCCCCEEEEccc
Confidence 7899999999622 2222 246889999887553
Done!