Query 007807
Match_columns 589
No_of_seqs 480 out of 2310
Neff 6.8
Searched_HMMs 46136
Date Thu Mar 28 15:36:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007807.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/007807hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG5243 HRD1 HRD ubiquitin lig 100.0 1.7E-40 3.7E-45 335.4 29.8 325 12-385 6-346 (491)
2 KOG0802 E3 ubiquitin ligase [P 100.0 3.1E-38 6.7E-43 352.4 29.0 491 43-572 20-525 (543)
3 KOG0804 Cytoplasmic Zn-finger 99.7 4.8E-18 1E-22 177.4 -0.8 142 336-491 176-338 (493)
4 KOG4628 Predicted E3 ubiquitin 99.3 6.6E-12 1.4E-16 130.7 9.6 74 310-386 202-280 (348)
5 PF13639 zf-RING_2: Ring finge 99.1 1.5E-11 3.2E-16 91.4 1.9 41 336-380 1-44 (44)
6 PLN03208 E3 ubiquitin-protein 99.0 5.4E-10 1.2E-14 107.5 4.8 55 334-388 17-83 (193)
7 PHA02929 N1R/p28-like protein; 99.0 6.3E-10 1.4E-14 111.3 5.3 47 334-384 173-227 (238)
8 KOG0823 Predicted E3 ubiquitin 98.9 5.5E-10 1.2E-14 109.3 3.7 54 334-388 46-99 (230)
9 PF12678 zf-rbx1: RING-H2 zinc 98.9 5.6E-10 1.2E-14 92.1 2.7 43 334-380 18-73 (73)
10 KOG0317 Predicted E3 ubiquitin 98.9 6.5E-10 1.4E-14 111.7 2.8 50 333-386 237-286 (293)
11 PF15227 zf-C3HC4_4: zinc fing 98.9 1.1E-09 2.5E-14 80.4 2.8 42 338-379 1-42 (42)
12 COG5540 RING-finger-containing 98.7 4.7E-09 1E-13 105.6 3.0 48 335-385 323-373 (374)
13 PF13920 zf-C3HC4_3: Zinc fing 98.7 7.3E-09 1.6E-13 79.0 2.8 46 335-384 2-48 (50)
14 PF13923 zf-C3HC4_2: Zinc fing 98.7 1.1E-08 2.4E-13 73.9 2.3 38 338-379 1-39 (39)
15 cd00162 RING RING-finger (Real 98.7 2.2E-08 4.7E-13 73.2 3.7 44 337-383 1-45 (45)
16 PF12861 zf-Apc11: Anaphase-pr 98.6 1.7E-08 3.7E-13 84.5 3.0 51 334-385 20-83 (85)
17 smart00504 Ubox Modified RING 98.6 4.6E-08 1E-12 77.8 4.0 46 336-385 2-47 (63)
18 PF00097 zf-C3HC4: Zinc finger 98.5 6.6E-08 1.4E-12 70.4 2.4 40 338-379 1-41 (41)
19 KOG0320 Predicted E3 ubiquitin 98.5 5.3E-08 1.1E-12 91.7 2.2 47 336-386 132-180 (187)
20 KOG1734 Predicted RING-contain 98.5 7.4E-06 1.6E-10 81.7 16.9 51 334-386 223-283 (328)
21 PHA02926 zinc finger-like prot 98.5 1E-07 2.2E-12 92.9 3.4 52 334-385 169-231 (242)
22 smart00184 RING Ring finger. E 98.4 1.7E-07 3.7E-12 66.0 3.1 39 338-379 1-39 (39)
23 TIGR00599 rad18 DNA repair pro 98.3 2.4E-07 5.1E-12 99.3 3.4 48 334-385 25-72 (397)
24 PF13445 zf-RING_UBOX: RING-ty 98.3 2.8E-07 6E-12 68.0 2.0 39 338-377 1-43 (43)
25 COG5574 PEX10 RING-finger-cont 98.3 2.9E-07 6.3E-12 91.8 2.2 49 335-386 215-264 (271)
26 KOG2164 Predicted E3 ubiquitin 98.3 6.2E-07 1.4E-11 96.8 4.1 55 335-389 186-241 (513)
27 KOG0828 Predicted E3 ubiquitin 98.2 6.7E-06 1.5E-10 87.9 10.2 49 334-385 570-635 (636)
28 PF14634 zf-RING_5: zinc-RING 98.2 8.2E-07 1.8E-11 65.9 2.4 41 337-381 1-44 (44)
29 KOG1493 Anaphase-promoting com 98.1 7.3E-07 1.6E-11 72.3 0.4 50 334-384 19-81 (84)
30 PF04564 U-box: U-box domain; 98.0 2.3E-06 5E-11 70.6 2.5 48 336-386 5-52 (73)
31 KOG0287 Postreplication repair 98.0 1.2E-06 2.7E-11 89.6 1.0 48 336-387 24-71 (442)
32 COG5194 APC11 Component of SCF 98.0 4.6E-06 9.9E-11 68.3 2.9 31 352-386 53-83 (88)
33 COG5432 RAD18 RING-finger-cont 97.9 4.4E-06 9.6E-11 83.9 2.1 47 336-386 26-72 (391)
34 KOG2930 SCF ubiquitin ligase, 97.8 7.7E-06 1.7E-10 70.2 1.5 30 352-385 80-109 (114)
35 KOG2177 Predicted E3 ubiquitin 97.8 9.3E-06 2E-10 82.7 1.8 43 334-380 12-54 (386)
36 KOG1785 Tyrosine kinase negati 97.7 2.2E-05 4.9E-10 82.0 3.3 48 336-385 370-417 (563)
37 TIGR00570 cdk7 CDK-activating 97.6 3.8E-05 8.2E-10 79.5 3.8 49 335-386 3-56 (309)
38 KOG0824 Predicted E3 ubiquitin 97.6 2.2E-05 4.8E-10 79.8 2.0 50 334-386 6-55 (324)
39 COG5219 Uncharacterized conser 97.6 2E-05 4.3E-10 89.7 1.1 48 335-384 1469-1523(1525)
40 PF13705 TRC8_N: TRC8 N-termin 97.5 0.0076 1.6E-07 66.4 19.9 105 126-233 348-453 (508)
41 KOG0311 Predicted E3 ubiquitin 97.4 2.6E-05 5.7E-10 80.8 -0.5 50 334-386 42-92 (381)
42 PF11793 FANCL_C: FANCL C-term 97.4 2.7E-05 5.9E-10 63.7 -0.3 51 335-385 2-67 (70)
43 PF14835 zf-RING_6: zf-RING of 97.4 4.5E-05 9.7E-10 60.5 0.2 45 336-386 8-53 (65)
44 smart00744 RINGv The RING-vari 97.3 0.00015 3.3E-09 55.1 2.9 42 337-380 1-49 (49)
45 KOG4265 Predicted E3 ubiquitin 97.3 0.00011 2.4E-09 76.6 2.8 49 333-385 288-337 (349)
46 KOG0978 E3 ubiquitin ligase in 97.3 0.00014 2.9E-09 82.6 3.4 48 336-386 644-691 (698)
47 KOG0827 Predicted E3 ubiquitin 97.2 0.00018 3.8E-09 75.4 1.9 47 336-383 5-55 (465)
48 KOG4172 Predicted E3 ubiquitin 97.1 0.00012 2.5E-09 55.9 0.3 47 334-384 6-54 (62)
49 KOG2114 Vacuolar assembly/sort 97.1 0.00041 8.8E-09 79.1 4.4 70 307-383 812-882 (933)
50 KOG4159 Predicted E3 ubiquitin 97.0 0.00031 6.8E-09 75.7 2.6 49 333-385 82-130 (398)
51 KOG2879 Predicted E3 ubiquitin 97.0 0.002 4.3E-08 65.0 7.3 50 333-384 237-287 (298)
52 KOG3970 Predicted E3 ubiquitin 97.0 0.0032 6.9E-08 61.7 8.4 54 333-386 48-107 (299)
53 KOG1039 Predicted E3 ubiquitin 96.8 0.00058 1.3E-08 72.2 2.1 52 334-385 160-222 (344)
54 KOG1941 Acetylcholine receptor 96.7 0.00076 1.6E-08 70.7 1.9 45 335-381 365-413 (518)
55 KOG1645 RING-finger-containing 96.7 0.001 2.2E-08 70.4 2.6 48 334-383 3-55 (463)
56 KOG1571 Predicted E3 ubiquitin 96.5 0.003 6.4E-08 66.3 4.7 44 334-384 304-347 (355)
57 KOG1002 Nucleotide excision re 96.5 0.0012 2.5E-08 71.7 1.6 52 335-386 536-588 (791)
58 KOG0825 PHD Zn-finger protein 96.4 0.001 2.3E-08 74.9 1.0 33 350-386 141-173 (1134)
59 KOG4445 Uncharacterized conser 96.4 0.0015 3.3E-08 66.4 1.7 52 335-386 115-188 (368)
60 KOG0297 TNF receptor-associate 96.4 0.0015 3.3E-08 70.9 1.7 50 333-386 19-69 (391)
61 KOG4692 Predicted E3 ubiquitin 96.2 0.003 6.4E-08 65.6 3.0 48 334-385 421-468 (489)
62 COG5152 Uncharacterized conser 96.1 0.002 4.3E-08 61.9 0.8 44 336-383 197-240 (259)
63 COG5222 Uncharacterized conser 95.9 0.0059 1.3E-07 62.1 3.5 44 335-381 274-318 (427)
64 PF10367 Vps39_2: Vacuolar sor 95.9 0.013 2.9E-07 51.2 5.4 30 334-363 77-108 (109)
65 PF11789 zf-Nse: Zinc-finger o 95.9 0.0033 7.2E-08 49.3 1.1 43 334-378 10-53 (57)
66 KOG2660 Locus-specific chromos 95.9 0.0029 6.3E-08 65.6 0.9 47 336-386 16-63 (331)
67 KOG1813 Predicted E3 ubiquitin 95.5 0.0042 9E-08 63.4 0.5 46 335-384 241-286 (313)
68 KOG1428 Inhibitor of type V ad 94.9 0.011 2.4E-07 70.3 1.6 53 333-385 3484-3545(3738)
69 KOG4275 Predicted E3 ubiquitin 94.7 0.008 1.7E-07 61.2 -0.3 42 335-384 300-342 (350)
70 PHA02825 LAP/PHD finger-like p 94.3 0.034 7.4E-07 52.2 3.0 51 333-386 6-61 (162)
71 KOG2034 Vacuolar sorting prote 94.2 0.056 1.2E-06 62.7 5.0 35 333-367 815-851 (911)
72 KOG1814 Predicted E3 ubiquitin 94.1 0.083 1.8E-06 56.4 5.6 56 327-382 176-238 (445)
73 COG5236 Uncharacterized conser 93.8 0.042 9E-07 57.2 2.7 54 326-383 52-107 (493)
74 PHA02862 5L protein; Provision 93.7 0.043 9.3E-07 50.6 2.3 48 335-385 2-54 (156)
75 PF14570 zf-RING_4: RING/Ubox 93.6 0.038 8.3E-07 41.7 1.5 42 338-382 1-46 (48)
76 KOG3039 Uncharacterized conser 93.4 0.077 1.7E-06 53.0 3.7 50 335-388 221-274 (303)
77 PF14447 Prok-RING_4: Prokaryo 93.3 0.04 8.7E-07 42.6 1.2 45 336-386 8-52 (55)
78 KOG2932 E3 ubiquitin ligase in 93.2 0.082 1.8E-06 54.4 3.7 42 337-384 92-134 (389)
79 KOG0826 Predicted E3 ubiquitin 93.2 0.19 4.2E-06 52.2 6.4 48 333-384 298-346 (357)
80 KOG1952 Transcription factor N 93.2 0.048 1E-06 62.8 2.2 49 333-381 189-244 (950)
81 PF10272 Tmpp129: Putative tra 92.9 0.15 3.3E-06 54.4 5.3 34 353-386 311-353 (358)
82 PF12906 RINGv: RING-variant d 92.3 0.061 1.3E-06 40.5 1.0 40 338-379 1-47 (47)
83 KOG4185 Predicted E3 ubiquitin 92.3 0.079 1.7E-06 55.3 2.2 45 336-383 4-54 (296)
84 COG5175 MOT2 Transcriptional r 92.1 0.085 1.8E-06 54.8 2.0 50 334-386 13-66 (480)
85 PHA03096 p28-like protein; Pro 91.9 0.078 1.7E-06 55.1 1.6 46 336-382 179-232 (284)
86 KOG1001 Helicase-like transcri 91.9 0.061 1.3E-06 62.2 0.9 48 336-386 455-502 (674)
87 PF07800 DUF1644: Protein of u 90.5 0.28 6.1E-06 46.1 3.6 52 335-386 2-93 (162)
88 PF05883 Baculo_RING: Baculovi 90.5 0.098 2.1E-06 48.0 0.6 32 336-367 27-67 (134)
89 PF02845 CUE: CUE domain; Int 90.3 0.43 9.2E-06 34.8 3.8 26 549-574 2-27 (42)
90 smart00546 CUE Domain that may 89.5 0.45 9.7E-06 34.8 3.4 26 548-573 2-27 (43)
91 KOG0802 E3 ubiquitin ligase [P 88.9 0.25 5.5E-06 56.1 2.5 57 322-386 466-522 (543)
92 PF05290 Baculo_IE-1: Baculovi 88.7 1.4 2.9E-05 40.4 6.5 49 336-386 81-134 (140)
93 KOG3268 Predicted E3 ubiquitin 88.3 0.31 6.8E-06 46.4 2.3 51 336-386 166-230 (234)
94 KOG4739 Uncharacterized protei 87.8 0.14 3.1E-06 51.2 -0.3 43 337-385 5-49 (233)
95 KOG1940 Zn-finger protein [Gen 86.8 0.34 7.4E-06 49.9 1.7 43 335-381 158-204 (276)
96 KOG0827 Predicted E3 ubiquitin 86.4 0.092 2E-06 55.6 -2.7 47 336-386 197-247 (465)
97 PF04641 Rtf2: Rtf2 RING-finge 86.3 0.61 1.3E-05 47.9 3.3 48 334-386 112-163 (260)
98 KOG3053 Uncharacterized conser 84.8 0.35 7.6E-06 48.8 0.6 51 334-384 19-82 (293)
99 PF08746 zf-RING-like: RING-li 84.1 0.75 1.6E-05 33.9 2.0 40 338-379 1-43 (43)
100 KOG0298 DEAD box-containing he 83.9 0.37 7.9E-06 58.2 0.4 44 336-383 1154-1198(1394)
101 COG5183 SSM4 Protein involved 83.0 0.72 1.6E-05 53.2 2.2 52 334-387 11-69 (1175)
102 KOG4367 Predicted Zn-finger pr 82.9 0.58 1.2E-05 50.3 1.3 35 334-368 3-37 (699)
103 KOG0801 Predicted E3 ubiquitin 82.0 0.47 1E-05 44.6 0.2 30 330-359 172-204 (205)
104 KOG3161 Predicted E3 ubiquitin 81.8 0.6 1.3E-05 52.6 1.0 38 337-381 13-54 (861)
105 KOG3800 Predicted E3 ubiquitin 81.5 1 2.2E-05 46.4 2.4 45 337-384 2-51 (300)
106 KOG2817 Predicted E3 ubiquitin 81.1 3.9 8.5E-05 44.0 6.7 46 336-382 335-383 (394)
107 KOG3002 Zn finger protein [Gen 79.5 1.1 2.4E-05 47.0 2.0 42 336-385 49-92 (299)
108 KOG1100 Predicted E3 ubiquitin 79.0 0.87 1.9E-05 45.3 1.0 40 337-384 160-200 (207)
109 PF03854 zf-P11: P-11 zinc fin 78.2 0.88 1.9E-05 34.2 0.6 44 337-386 4-48 (50)
110 KOG3899 Uncharacterized conser 78.2 1.1 2.3E-05 46.1 1.3 35 352-386 324-367 (381)
111 KOG4362 Transcriptional regula 77.8 0.63 1.4E-05 53.4 -0.4 49 335-384 21-69 (684)
112 COG5220 TFB3 Cdk activating ki 76.2 1.4 3E-05 44.1 1.4 45 334-381 9-61 (314)
113 KOG0825 PHD Zn-finger protein 67.6 2.9 6.3E-05 48.3 1.7 52 334-385 95-155 (1134)
114 KOG0309 Conserved WD40 repeat- 65.8 3.6 7.9E-05 47.4 2.0 25 350-378 1045-1069(1081)
115 KOG1609 Protein involved in mR 63.5 3.3 7.2E-05 43.2 1.1 49 335-385 78-135 (323)
116 KOG2066 Vacuolar assembly/sort 62.0 5.1 0.00011 46.5 2.4 35 334-368 783-824 (846)
117 KOG4718 Non-SMC (structural ma 61.8 4.5 9.8E-05 39.9 1.6 44 336-383 182-226 (235)
118 PF02891 zf-MIZ: MIZ/SP-RING z 59.9 7.2 0.00016 29.7 2.1 46 336-382 3-50 (50)
119 KOG3579 Predicted E3 ubiquitin 58.5 6.4 0.00014 40.5 2.1 34 336-369 269-306 (352)
120 KOG1812 Predicted E3 ubiquitin 55.7 8.8 0.00019 41.8 2.7 34 335-368 146-183 (384)
121 KOG3039 Uncharacterized conser 54.2 7.6 0.00016 39.2 1.8 32 336-367 44-75 (303)
122 smart00249 PHD PHD zinc finger 54.0 5.1 0.00011 28.7 0.4 28 337-364 1-31 (47)
123 KOG0269 WD40 repeat-containing 53.7 9.9 0.00021 44.1 2.8 38 337-378 781-820 (839)
124 PRK12495 hypothetical protein; 52.7 2.6E+02 0.0056 28.2 13.2 13 373-385 58-70 (226)
125 PF07191 zinc-ribbons_6: zinc- 50.4 1.5 3.3E-05 35.8 -3.1 40 336-384 2-41 (70)
126 PF04216 FdhE: Protein involve 48.9 6.3 0.00014 41.1 0.3 45 334-382 171-220 (290)
127 KOG2068 MOT2 transcription fac 47.0 15 0.00032 38.8 2.7 45 336-384 250-298 (327)
128 smart00132 LIM Zinc-binding do 43.7 19 0.00042 24.5 2.1 35 337-383 1-37 (39)
129 PF04710 Pellino: Pellino; In 38.4 11 0.00023 40.8 0.1 31 350-383 306-338 (416)
130 KOG3113 Uncharacterized conser 37.7 33 0.00072 35.0 3.4 46 335-386 111-160 (293)
131 PF06844 DUF1244: Protein of u 36.8 20 0.00043 29.0 1.3 13 356-368 11-23 (68)
132 KOG3842 Adaptor protein Pellin 36.7 27 0.00059 36.6 2.7 51 334-384 340-414 (429)
133 PF13901 DUF4206: Domain of un 36.1 18 0.00039 35.7 1.3 39 334-381 151-197 (202)
134 PF00412 LIM: LIM domain; Int 35.9 23 0.0005 26.9 1.6 37 338-386 1-39 (58)
135 KOG1829 Uncharacterized conser 35.9 12 0.00026 42.7 -0.0 24 351-381 535-558 (580)
136 COG5109 Uncharacterized conser 35.3 23 0.00051 37.1 1.9 44 336-380 337-383 (396)
137 PF10571 UPF0547: Uncharacteri 33.3 22 0.00047 23.4 0.9 21 337-357 2-24 (26)
138 KOG3842 Adaptor protein Pellin 32.6 19 0.0004 37.7 0.7 47 333-382 288-350 (429)
139 KOG1815 Predicted E3 ubiquitin 31.9 25 0.00053 39.1 1.6 36 334-369 69-105 (444)
140 PF14446 Prok-RING_1: Prokaryo 31.4 43 0.00092 26.1 2.3 29 334-362 4-36 (54)
141 KOG0956 PHD finger protein AF1 30.9 1.3E+02 0.0029 35.0 7.0 51 334-384 116-182 (900)
142 PLN02189 cellulose synthase 29.3 52 0.0011 40.1 3.8 48 334-384 33-87 (1040)
143 PRK03564 formate dehydrogenase 28.4 36 0.00078 36.0 2.0 44 334-381 186-234 (309)
144 TIGR02921 PEP_integral PEP-CTE 28.4 2.2E+02 0.0049 32.8 8.1 30 82-112 169-198 (952)
145 PF10497 zf-4CXXC_R1: Zinc-fin 27.1 59 0.0013 28.7 2.9 48 335-382 7-70 (105)
146 KOG0824 Predicted E3 ubiquitin 26.9 23 0.00049 37.0 0.2 47 334-384 104-151 (324)
147 TIGR01562 FdhE formate dehydro 26.6 33 0.00072 36.2 1.4 43 335-381 184-232 (305)
148 KOG2807 RNA polymerase II tran 25.5 70 0.0015 33.9 3.4 54 323-380 314-374 (378)
149 PLN02436 cellulose synthase A 25.2 68 0.0015 39.3 3.7 47 335-384 36-89 (1094)
150 KOG4185 Predicted E3 ubiquitin 24.8 34 0.00073 35.5 1.1 45 335-382 207-265 (296)
151 KOG3005 GIY-YIG type nuclease 24.5 36 0.00079 35.0 1.2 48 336-383 183-242 (276)
152 PF02318 FYVE_2: FYVE-type zin 23.9 86 0.0019 28.1 3.4 45 334-381 53-102 (118)
153 KOG4218 Nuclear hormone recept 23.6 2.6E+02 0.0056 30.0 7.1 13 334-346 14-26 (475)
154 PF01363 FYVE: FYVE zinc finge 23.3 31 0.00068 27.5 0.4 30 335-364 9-42 (69)
155 KOG2071 mRNA cleavage and poly 23.1 37 0.0008 38.6 1.0 30 336-365 514-556 (579)
156 PF14569 zf-UDP: Zinc-binding 22.6 89 0.0019 26.2 2.8 48 334-384 8-62 (80)
157 KOG2041 WD40 repeat protein [G 22.1 44 0.00096 38.9 1.3 44 333-384 1129-1185(1189)
158 PF04710 Pellino: Pellino; In 21.8 30 0.00066 37.5 0.0 50 335-384 328-401 (416)
159 KOG1812 Predicted E3 ubiquitin 21.4 46 0.001 36.3 1.3 42 334-379 305-351 (384)
160 PF00628 PHD: PHD-finger; Int 21.4 40 0.00087 25.0 0.6 45 337-381 1-50 (51)
161 KOG1245 Chromatin remodeling c 21.3 94 0.002 39.6 4.0 50 334-383 1107-1159(1404)
162 PF09726 Macoilin: Transmembra 20.5 4.1E+02 0.009 31.4 8.9 105 84-216 7-114 (697)
No 1
>COG5243 HRD1 HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.7e-40 Score=335.44 Aligned_cols=325 Identities=24% Similarity=0.365 Sum_probs=235.9
Q ss_pred HHHHHHHhhHHHhhhhhhhhcccccccccccccchhHHHHHHHHh-chhHHHHHHHHHHHHHHHHHHHHHHHHcccCcHH
Q 007807 12 STILSFVGLQFWTEFSLDKLRTDGLVVENVIHLESANRVLELLLR-SYATVALLANFVLNVFVLINLCLKTIFFGELYPA 90 (589)
Q Consensus 12 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-s~~~v~vL~N~~~~~~~ll~~~lq~lfFG~LR~~ 90 (589)
|...+++++.-..+-++. .....|++++.-+| |.++++++.|++++++.++++++++++||+||..
T Consensus 6 y~l~~~Vl~~l~~~~~~~-------------~s~t~ys~l~~t~~ls~~hi~i~~~~ill~~~l~~~~l~~llFGsLr~~ 72 (491)
T COG5243 6 YVLASLVLFGLSVLLSLY-------------SSATVYSALVMTSQLSPVHITIGLNVILLLFFLIANALKTLLFGSLRTF 72 (491)
T ss_pred hhHHHHHHHHHHHHHHHh-------------ccceeeeeeeeeeccCcchhHHHHHHHHHHHHHHHHHHHHHhhhhhHHH
Confidence 445556655555554432 34456677777777 8999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhhccccccccchhhhHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCCCCcchh--HHHHHHHHH
Q 007807 91 ETRKFVERLINYVIYKGTFLPLVIPPTVFQAGLWSVWLTVLCSLKMFQALARDRLERLNASPSATPWTY--FRVFSALLF 168 (589)
Q Consensus 91 E~e~L~er~~~~~~~k~~fl~~vi~~~~~~~~~w~~wF~~L~fLK~fhwL~~dRve~L~~Sp~~~~~~h--~Rl~~lL~~ 168 (589)
|.|+++|++| |++. ++.+...++++.... .+..++..|+|+|+||||+++|+|.+. -.++..+.| -|+.+++++
T Consensus 73 E~e~~~E~l~-~tlt-~~ll~iS~F~e~i~f-s~~~l~~~Ll~~kvfhwil~~R~er~~-~~st~~~~~ifSrfS~~~~l 148 (491)
T COG5243 73 ELELLYEQLW-ITLT-EILLAISVFREAISF-SFFMLLSTLLFAKVFHWILSFRTERLQ-IQSTDQRFHIFSRFSCAYFL 148 (491)
T ss_pred HHHHHHHhhH-HHHH-HHHHHHHHHHhhHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH
Confidence 9999999999 4544 444444445543221 245678889999999999999999763 233444554 699999999
Q ss_pred HHHHHHHHHHHHHHHHhhCCCchhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcccccchhhhhhhcccchh
Q 007807 169 VLAVDIFWIRMCLLLFKTLDSSMFLLLFFEPLSVAFETMQAILVHGFQLLDIWLHHSAGNSTNCARSKFFDTLAAGSLLE 248 (589)
Q Consensus 169 ll~~D~~~i~~~~~~~~~~g~s~~ll~~fE~~~l~~~tl~~ll~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~g~~we 248 (589)
+.++|..+|..|+..-...+.++..++..|+-.+ ...++.. . +..+... ++.++ .-+
T Consensus 149 L~ild~~li~~CiSs~~liD~~~lfL~~c~F~~~-ll~l~s~----------------~-n~~cV~n--~~~~d---dDd 205 (491)
T COG5243 149 LSILDASLIYLCISSEHLIDKSTLFLFVCEFSVL-LLNLTSE----------------A-NKLCVYN--YEARD---DDD 205 (491)
T ss_pred HHHHhHHHHHHHhhhHhhhhhhHHHHHHHHHHHH-HHHHHHh----------------h-cccceee--ccccc---ccc
Confidence 9999999999998754444444333333343211 1111110 0 0001000 00000 013
Q ss_pred hhhhhHHhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCh
Q 007807 249 WKGILIRNFGFFLDMATLLMALGHYIHIWWLRGMAFHLVDAILFLNIRALLSAIIKRIKGFIKLRIALGHLHAALPDATS 328 (589)
Q Consensus 249 ~kg~~i~~~~f~~dl~~~~~~l~~~~~~~~~~g~~~~l~~~vl~l~ir~~~~~~~~ri~~~~~~r~~~~~l~~~~p~~~~ 328 (589)
.|..+.++.++..|=++++.+-..+...+..+.+|+.+++.++. . +..+.+|++.+.+++++.+++++.+|.++.
T Consensus 206 ~rs~~~f~~~v~y~g~tllays~l~~~~~~~~r~Pi~l~r~~~t-~----~~AL~~~i~~~~~~~r~~kdl~~~~~t~t~ 280 (491)
T COG5243 206 ERSTYLFRLEVCYDGLTLLAYSLLFMYQFPYVRVPIYLIRQMYT-C----FYALFRRIREHARFRRATKDLNAMYPTATE 280 (491)
T ss_pred cceeeeeeeehHHHHHHHHHHHHHHHhhccchhchHHHHHHHHH-H----HHHHHHHHHHHHHHHHHhhHHHhhcchhhh
Confidence 45566667788888888888777777777778899999887543 3 335678899999999999999999999999
Q ss_pred hhhhcCCCccccccccc-c------------cceeeccCCcccHhHHHHHHhcCCCCCCCCcccccCCcC
Q 007807 329 EELRAYDDECAICREPM-A------------KAKKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFV 385 (589)
Q Consensus 329 ~el~~~~~~C~IC~e~~-~------------~~~~lpC~H~Fh~~Cl~~Wl~~~~~~~~~CP~CR~~~~~ 385 (589)
|++.+.|..|.||+|++ . .||++||||++|.+|++.|+++ +++||+||.++.-
T Consensus 281 eql~n~D~~C~ICmde~~h~~~~~~~~~~~~~pKrLpCGHilHl~CLknW~ER----qQTCPICr~p~if 346 (491)
T COG5243 281 EQLTNSDRTCTICMDEMFHPDHEPLPRGLDMTPKRLPCGHILHLHCLKNWLER----QQTCPICRRPVIF 346 (491)
T ss_pred hhhcCCCCeEEEecccccCCCCccCcccccCCcccccccceeeHHHHHHHHHh----ccCCCcccCcccc
Confidence 99988999999999994 3 2589999999999999999999 6999999999543
No 2
>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.1e-38 Score=352.39 Aligned_cols=491 Identities=27% Similarity=0.249 Sum_probs=344.9
Q ss_pred ccchhHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHcccCcHHHHHHHHHHHHHHHHHHhhhcc-ccccccchhh
Q 007807 43 HLESANRVLELLLRSYATVALLANFVLNVFVLINLCLKTIFFGELYPAETRKFVERLINYVIYKGTFLP-LVIPPTVFQA 121 (589)
Q Consensus 43 ~~~~~~~~~~~l~~s~~~v~vL~N~~~~~~~ll~~~lq~lfFG~LR~~E~e~L~er~~~~~~~k~~fl~-~vi~~~~~~~ 121 (589)
...|++++.+|+++++.+++++.|+.++...++.+.+|.+|||.|+..|.||+.|++|+|.+++.+|.. .+.+++.+.
T Consensus 20 ~~~q~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~sl~~~~~g~l~~~~~e~~~~~l~~~~~~~~~~~~~~~~~~~~~~- 98 (543)
T KOG0802|consen 20 GSAQSISTTVLLLSSPTSLAVLLNRALVVLALILLSLQLIFFGALLLSEAEHLSHSLWNLIGLKYTFLLGYVTFRTVLS- 98 (543)
T ss_pred hhhcccccceeeecccHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccchhh-
Confidence 344589999999999999999999999999999999999999999999999999999999999999987 444567777
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHh-hCCCchhHHHHHHhH
Q 007807 122 GLWSVWLTVLCSLKMFQALARDRLERLNASPSATPWTYFRVFSALLFVLAVDIFWIRMCLLLFK-TLDSSMFLLLFFEPL 200 (589)
Q Consensus 122 ~~w~~wF~~L~fLK~fhwL~~dRve~L~~Sp~~~~~~h~Rl~~lL~~ll~~D~~~i~~~~~~~~-~~g~s~~ll~~fE~~ 200 (589)
..|..|+.+++++|+||||++||+++|+++|..+.+.|+|+...+..+...|...+..++.... +.|.++.+.+.++.+
T Consensus 99 ~~~~~~~~~l~~l~~~~~l~~~~~~~l~~~~~~~~~~~~~v~~~~~~l~~~~~~~~~~s~~~~~~t~~~~~l~~~~~~~~ 178 (543)
T KOG0802|consen 99 ELFSLWLLLLLFLHVFHLLASDRLPRLFFSPLITTLNHFRVVSVLFALLIVDGHLVYNSLKTAYRTYGLSMLIELTFPSL 178 (543)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHhCcchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhheeccchHHH
Confidence 7799999999999999999999999999999999999999999999999999988877776544 778888888899998
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccCCcccccchhhhhhhcccchhhhhhhHHhHHHHHHHHHHHHHHHHHHHHHHHh
Q 007807 201 SVAFETMQAILVHGFQLLDIWLHHSAGNSTNCARSKFFDTLAAGSLLEWKGILIRNFGFFLDMATLLMALGHYIHIWWLR 280 (589)
Q Consensus 201 ~l~~~tl~~ll~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~g~~we~kg~~i~~~~f~~dl~~~~~~l~~~~~~~~~~ 280 (589)
++.+.+....+.|.++..+ +. . -..|+++..+..+.+...+...+...+.++.+.+..+
T Consensus 179 ~~~~~~~~~~~~y~l~~~~-----------~~--------~--~~~~~~~~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~ 237 (543)
T KOG0802|consen 179 LVVFWTALVILQYVLHSTA-----------DH--------I--HIRSEDLSLLTFTLIIFGCMTLLVLLIMSAVISLVVH 237 (543)
T ss_pred HHHHHHHHHHHHHHHhcch-----------hh--------c--CcccCccceeechhHHHhhhhHHHHHhhhHHHHHHHh
Confidence 8887777766665443221 00 0 1235778888888888888888888889999999889
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhhhCCCCChhh--hhcCCCccccccccccc-----ceeec
Q 007807 281 GMAFHLVDAILFLNIRALLSAIIKRIKGFIKLRIALGH-LHAALPDATSEE--LRAYDDECAICREPMAK-----AKKLL 352 (589)
Q Consensus 281 g~~~~l~~~vl~l~ir~~~~~~~~ri~~~~~~r~~~~~-l~~~~p~~~~~e--l~~~~~~C~IC~e~~~~-----~~~lp 352 (589)
++++++.+.+.... +....++.+...+.++.... +...++.++.++ ....++.|+||+|.+.. ++++|
T Consensus 238 ~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~IC~e~l~~~~~~~~~rL~ 313 (543)
T KOG0802|consen 238 GILLGLVADLYNTP----FLEVERRLRELAPLRRVILATLQTGLPGATLEERGLALSDELCIICLEELHSGHNITPKRLP 313 (543)
T ss_pred HhhhhhhHHHhhhh----hhhHHHHccchHHHHHHhhccccccccccChHHhhhhhcCCeeeeechhhccccccccceee
Confidence 89998887754322 34556677777778877777 788888888887 66788999999999988 79999
Q ss_pred cCCcccHhHHHHHHhcCCCCCCCCcccccCCcCCCcccccCCCCCCCCchHHHHhhhhcCCCCCCCCC--CCCCCCCCCC
Q 007807 353 CNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFVGRREIEANSRPGEVSSDEQLARQLSMGLDRQNNTG--QTLPTGVFPN 430 (589)
Q Consensus 353 C~H~Fh~~Cl~~Wl~~~~~~~~~CP~CR~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~g~~~~~~~~--~~~~~~~~p~ 430 (589)
|+|+||..|+++|+++ .++||+||..+....................+...+ .+..+. +..+....+.
T Consensus 314 C~Hifh~~CL~~W~er----~qtCP~CR~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~ 383 (543)
T KOG0802|consen 314 CGHIFHDSCLRSWFER----QQTCPTCRTVLYDYVLWQIAALQTWLLVVTTKSALE------VLKVPVSLATYTLFMVET 383 (543)
T ss_pred cccchHHHHHHHHHHH----hCcCCcchhhhhccccccccCCccccccccceeccc------ccccccccccCccccccc
Confidence 9999999999999999 699999999655442211111111111111111111 111111 1111111222
Q ss_pred CCCCCCCCCCCCCCCCCCCccccccCCCCCCCCCCccccc-cCcchhhhhhhhhccCCcccccccccccccc-cCCCCCC
Q 007807 431 QTQPPVEGSPWRNAGLDSSWLHAWPSQGVDGAGPSTAMRS-VGLSRVQMMMRHLASVGETYAQTAIEDTSWS-LWPMNPS 508 (589)
Q Consensus 431 ~~~~~~~~~~wr~~G~~~sw~~~l~~~~~~~~~~s~a~r~-~~~~~vq~~~~~l~s~~~~~~~~~~~~~~~~-~~~~~~s 508 (589)
......++..++-...++.+.......+..-.+.+...+. +....++..+....+.++-+-+ .+...++ .++..++
T Consensus 384 ~~~~~~e~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~ 461 (543)
T KOG0802|consen 384 RREEPWENLDDLIYYVRSTGNSIEFLFGKVVFGNGASPVIFESGSQIRAAMMCIHSYFNIYLR--AEPGWSSFLNRRSAV 461 (543)
T ss_pred ccccccCCCcchhhhcCccchhhHhhhhhhcccccchhheecCCccccccceeeeeecccccc--cccccCcccCccccc
Confidence 2222222222222222233333333333222222222222 3334556666777677666666 2333333 4566666
Q ss_pred CCCCCCCCCCCCCC-CCCCCCCCcccccccccccchhhHhHHHHHHHHHHhcCCCchHHHHHHHh
Q 007807 509 QASASGSPVPPAVP-GRHPGNTGGAHARSTSRSANENIANILAMAETVREVLPHMPEDLIFQVCL 572 (589)
Q Consensus 509 ~~s~~~s~~~~~~~-~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 572 (589)
++..+.|-..|..- ..++....+++-+ .+++++...+..+.+...|+||-|+.|+++..+|-.
T Consensus 462 ~~~~~~s~~~~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~pl~~~~~~~~~~~ 525 (543)
T KOG0802|consen 462 KKINSLSEATPSQLREPNDVCAICYQEM-SARITPCSHALCLRKWLYVQEVCPLCHTYMKEDDFL 525 (543)
T ss_pred cccCCCCCCChhhhhcccCcchHHHHHH-HhccccccchhHHHhhhhhccccCCCchhhhccccc
Confidence 55555554444333 3334455556655 555555557889999999999999999999988743
No 3
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=99.67 E-value=4.8e-18 Score=177.39 Aligned_cols=142 Identities=24% Similarity=0.463 Sum_probs=110.8
Q ss_pred Ccccccccccccc----eeeccCCcccHhHHHHHHhcCCCCCCCCcccccCCcCCCcccccCCCCCCCCchHHH-----H
Q 007807 336 DECAICREPMAKA----KKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFVGRREIEANSRPGEVSSDEQL-----A 406 (589)
Q Consensus 336 ~~C~IC~e~~~~~----~~lpC~H~Fh~~Cl~~Wl~~~~~~~~~CP~CR~~~~~~~~~~~~~~~~~~~~~~e~~-----~ 406 (589)
++|+||+|.|++. +.+.|.|.||..|+..|.. .+||+||.... +.......|..|+..+++ |
T Consensus 176 PTCpVCLERMD~s~~gi~t~~c~Hsfh~~cl~~w~~------~scpvcR~~q~---p~~ve~~~c~~c~~~~~LwicliC 246 (493)
T KOG0804|consen 176 PTCPVCLERMDSSTTGILTILCNHSFHCSCLMKWWD------SSCPVCRYCQS---PSVVESSLCLACGCTEDLWICLIC 246 (493)
T ss_pred CCcchhHhhcCccccceeeeecccccchHHHhhccc------CcChhhhhhcC---cchhhhhhhhhhcccccEEEEEEc
Confidence 5999999999875 3568999999999999986 59999998765 334456778888888875 9
Q ss_pred hhhhcCCCCCCCCC-CCC-CCCCCCCCCCCCCCCCCCCCCCCCCCccccccCCCCCCCC-----CCccccccCcchh---
Q 007807 407 RQLSMGLDRQNNTG-QTL-PTGVFPNQTQPPVEGSPWRNAGLDSSWLHAWPSQGVDGAG-----PSTAMRSVGLSRV--- 476 (589)
Q Consensus 407 ~~~~~g~~~~~~~~-~~~-~~~~~p~~~~~~~~~~~wr~~G~~~sw~~~l~~~~~~~~~-----~s~a~r~~~~~~v--- 476 (589)
+..++|++..+|+. |+. +.|+|.++..++ ++|||+| |+|+||+.+...||+- .....+..+.+..
T Consensus 247 g~vgcgrY~eghA~rHweet~H~yalel~tq---rVWDYAG--DnYVhRl~~~~~dGklve~~~~~~~~~~~~~~~~~~~ 321 (493)
T KOG0804|consen 247 GNVGCGRYKEGHARRHWEETGHCYALELETQ---RVWDYAG--DNYVHRLPQSKTDGKLVESSTEGDDSRKDDCDSLELE 321 (493)
T ss_pred cceecccccchhHHHHHHhhcceEEEeecce---eeeeccc--chhhhhccccCCCCceEEeccccccccccCcceEEee
Confidence 99999999999998 888 999999999776 9999999 9999999999988872 2222243444433
Q ss_pred --hhhhhhhccCCcccc
Q 007807 477 --QMMMRHLASVGETYA 491 (589)
Q Consensus 477 --q~~~~~l~s~~~~~~ 491 (589)
++.-++|.|+..+|.
T Consensus 322 ~s~ll~sqleSqr~y~e 338 (493)
T KOG0804|consen 322 YSPLLTSQLESQRKYYE 338 (493)
T ss_pred cchhhhhhhhHHHHHHH
Confidence 444455555544444
No 4
>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.30 E-value=6.6e-12 Score=130.68 Aligned_cols=74 Identities=31% Similarity=0.626 Sum_probs=56.4
Q ss_pred HHHHHHHHHHhhhCCCCChhhhhcC--CCcccccccccccc---eeeccCCcccHhHHHHHHhcCCCCCCCCcccccCCc
Q 007807 310 IKLRIALGHLHAALPDATSEELRAY--DDECAICREPMAKA---KKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLF 384 (589)
Q Consensus 310 ~~~r~~~~~l~~~~p~~~~~el~~~--~~~C~IC~e~~~~~---~~lpC~H~Fh~~Cl~~Wl~~~~~~~~~CP~CR~~~~ 384 (589)
.+.++..+++.+++|..+..+..++ .+.|+||+|+|.+. +.|||+|.||..||++||.+. ...||+||+.+.
T Consensus 202 ~~~~r~~k~~l~~~p~~~f~~~~~~~~~~~CaIClEdY~~GdklRiLPC~H~FH~~CIDpWL~~~---r~~CPvCK~di~ 278 (348)
T KOG4628|consen 202 LRRNRLIKRLLKKLPVRTFTKGDDEDATDTCAICLEDYEKGDKLRILPCSHKFHVNCIDPWLTQT---RTFCPVCKRDIR 278 (348)
T ss_pred hhhhhhHHHHHhhCCcEEeccccccCCCceEEEeecccccCCeeeEecCCCchhhccchhhHhhc---CccCCCCCCcCC
Confidence 3455666777777777665543221 14899999999876 457999999999999999884 467999999876
Q ss_pred CC
Q 007807 385 VG 386 (589)
Q Consensus 385 ~~ 386 (589)
..
T Consensus 279 ~~ 280 (348)
T KOG4628|consen 279 TD 280 (348)
T ss_pred CC
Confidence 54
No 5
>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A ....
Probab=99.14 E-value=1.5e-11 Score=91.36 Aligned_cols=41 Identities=49% Similarity=1.176 Sum_probs=35.1
Q ss_pred Cccccccccccc---ceeeccCCcccHhHHHHHHhcCCCCCCCCcccc
Q 007807 336 DECAICREPMAK---AKKLLCNHLFHLACLRSWLDQGLNEMYSCPTCR 380 (589)
Q Consensus 336 ~~C~IC~e~~~~---~~~lpC~H~Fh~~Cl~~Wl~~~~~~~~~CP~CR 380 (589)
++|+||++++.. .+.++|||.||.+|+.+|+++ +.+||+||
T Consensus 1 d~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~~~~~----~~~CP~CR 44 (44)
T PF13639_consen 1 DECPICLEEFEDGEKVVKLPCGHVFHRSCIKEWLKR----NNSCPVCR 44 (44)
T ss_dssp -CETTTTCBHHTTSCEEEETTSEEEEHHHHHHHHHH----SSB-TTTH
T ss_pred CCCcCCChhhcCCCeEEEccCCCeeCHHHHHHHHHh----CCcCCccC
Confidence 479999999953 467899999999999999998 58999997
No 6
>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional
Probab=98.96 E-value=5.4e-10 Score=107.49 Aligned_cols=55 Identities=27% Similarity=0.629 Sum_probs=45.3
Q ss_pred CCCcccccccccccceeeccCCcccHhHHHHHHhcC------------CCCCCCCcccccCCcCCCc
Q 007807 334 YDDECAICREPMAKAKKLLCNHLFHLACLRSWLDQG------------LNEMYSCPTCRKPLFVGRR 388 (589)
Q Consensus 334 ~~~~C~IC~e~~~~~~~lpC~H~Fh~~Cl~~Wl~~~------------~~~~~~CP~CR~~~~~~~~ 388 (589)
.+.+|+||++.+++++.++|||.||+.||.+|+... ......||+||..+...+.
T Consensus 17 ~~~~CpICld~~~dPVvT~CGH~FC~~CI~~wl~~s~~s~~~~~~~~~~k~~~~CPvCR~~Is~~~L 83 (193)
T PLN03208 17 GDFDCNICLDQVRDPVVTLCGHLFCWPCIHKWTYASNNSRQRVDQYDHKREPPKCPVCKSDVSEATL 83 (193)
T ss_pred CccCCccCCCcCCCcEEcCCCchhHHHHHHHHHHhccccccccccccccCCCCcCCCCCCcCChhcE
Confidence 456899999999999999999999999999998642 1124689999999976543
No 7
>PHA02929 N1R/p28-like protein; Provisional
Probab=98.95 E-value=6.3e-10 Score=111.31 Aligned_cols=47 Identities=38% Similarity=0.924 Sum_probs=39.9
Q ss_pred CCCcccccccccccc--------eeeccCCcccHhHHHHHHhcCCCCCCCCcccccCCc
Q 007807 334 YDDECAICREPMAKA--------KKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLF 384 (589)
Q Consensus 334 ~~~~C~IC~e~~~~~--------~~lpC~H~Fh~~Cl~~Wl~~~~~~~~~CP~CR~~~~ 384 (589)
.+.+|+||+|.+.++ +..+|+|.||..||.+|+++ +.+||+||.++.
T Consensus 173 ~~~eC~ICle~~~~~~~~~~~~~vl~~C~H~FC~~CI~~Wl~~----~~tCPlCR~~~~ 227 (238)
T PHA02929 173 KDKECAICMEKVYDKEIKNMYFGILSNCNHVFCIECIDIWKKE----KNTCPVCRTPFI 227 (238)
T ss_pred CCCCCccCCcccccCccccccceecCCCCCcccHHHHHHHHhc----CCCCCCCCCEee
Confidence 467899999997653 34589999999999999987 689999999875
No 8
>KOG0823 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.93 E-value=5.5e-10 Score=109.26 Aligned_cols=54 Identities=30% Similarity=0.639 Sum_probs=46.9
Q ss_pred CCCcccccccccccceeeccCCcccHhHHHHHHhcCCCCCCCCcccccCCcCCCc
Q 007807 334 YDDECAICREPMAKAKKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFVGRR 388 (589)
Q Consensus 334 ~~~~C~IC~e~~~~~~~lpC~H~Fh~~Cl~~Wl~~~~~~~~~CP~CR~~~~~~~~ 388 (589)
..-+|.||+|.-++|+.+.|||.||+.||.+|++.... .+.||+||..+..++.
T Consensus 46 ~~FdCNICLd~akdPVvTlCGHLFCWpClyqWl~~~~~-~~~cPVCK~~Vs~~~v 99 (230)
T KOG0823|consen 46 GFFDCNICLDLAKDPVVTLCGHLFCWPCLYQWLQTRPN-SKECPVCKAEVSIDTV 99 (230)
T ss_pred CceeeeeeccccCCCEEeecccceehHHHHHHHhhcCC-CeeCCccccccccceE
Confidence 34589999999999999999999999999999987543 6889999999876543
No 9
>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This domain constitutes a conserved region found in proteins that participate in diverse functions relevant to chromosome metabolism and cell cycle control [].The domain contains 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding.; PDB: 4A0C_D 4A0L_I 4A0K_B 2ECL_A 1LDK_C 3RTR_F 3DQV_Y 1U6G_B 1LDJ_B 2HYE_D ....
Probab=98.91 E-value=5.6e-10 Score=92.14 Aligned_cols=43 Identities=49% Similarity=1.143 Sum_probs=34.9
Q ss_pred CCCcccccccccccc-------------eeeccCCcccHhHHHHHHhcCCCCCCCCcccc
Q 007807 334 YDDECAICREPMAKA-------------KKLLCNHLFHLACLRSWLDQGLNEMYSCPTCR 380 (589)
Q Consensus 334 ~~~~C~IC~e~~~~~-------------~~lpC~H~Fh~~Cl~~Wl~~~~~~~~~CP~CR 380 (589)
.++.|+||++++.++ ...+|||.||..||.+|+++ +.+||+||
T Consensus 18 ~~d~C~IC~~~l~~~~~~~~~~~~~~~i~~~~C~H~FH~~Ci~~Wl~~----~~~CP~CR 73 (73)
T PF12678_consen 18 ADDNCAICREPLEDPCPECQAPQDECPIVWGPCGHIFHFHCISQWLKQ----NNTCPLCR 73 (73)
T ss_dssp CCSBETTTTSBTTSTTCCHHHCTTTS-EEEETTSEEEEHHHHHHHHTT----SSB-TTSS
T ss_pred cCCcccccChhhhChhhhhcCCccccceEecccCCCEEHHHHHHHHhc----CCcCCCCC
Confidence 355799999999431 23489999999999999998 58999998
No 10
>KOG0317 consensus Predicted E3 ubiquitin ligase, integral peroxisomal membrane protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.89 E-value=6.5e-10 Score=111.70 Aligned_cols=50 Identities=24% Similarity=0.706 Sum_probs=45.2
Q ss_pred cCCCcccccccccccceeeccCCcccHhHHHHHHhcCCCCCCCCcccccCCcCC
Q 007807 333 AYDDECAICREPMAKAKKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFVG 386 (589)
Q Consensus 333 ~~~~~C~IC~e~~~~~~~lpC~H~Fh~~Cl~~Wl~~~~~~~~~CP~CR~~~~~~ 386 (589)
+.+..|.+|+|...+|..+||||+||+.||.+|... ...||.||....+.
T Consensus 237 ~a~~kC~LCLe~~~~pSaTpCGHiFCWsCI~~w~~e----k~eCPlCR~~~~ps 286 (293)
T KOG0317|consen 237 EATRKCSLCLENRSNPSATPCGHIFCWSCILEWCSE----KAECPLCREKFQPS 286 (293)
T ss_pred CCCCceEEEecCCCCCCcCcCcchHHHHHHHHHHcc----ccCCCcccccCCCc
Confidence 345789999999999999999999999999999988 57899999988765
No 11
>PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A.
Probab=98.87 E-value=1.1e-09 Score=80.39 Aligned_cols=42 Identities=31% Similarity=0.759 Sum_probs=32.8
Q ss_pred ccccccccccceeeccCCcccHhHHHHHHhcCCCCCCCCccc
Q 007807 338 CAICREPMAKAKKLLCNHLFHLACLRSWLDQGLNEMYSCPTC 379 (589)
Q Consensus 338 C~IC~e~~~~~~~lpC~H~Fh~~Cl~~Wl~~~~~~~~~CP~C 379 (589)
|+||++.+.+|+.++|||+||..||.+|.++.......||.|
T Consensus 1 CpiC~~~~~~Pv~l~CGH~FC~~Cl~~~~~~~~~~~~~CP~C 42 (42)
T PF15227_consen 1 CPICLDLFKDPVSLPCGHSFCRSCLERLWKEPSGSGFSCPEC 42 (42)
T ss_dssp ETTTTSB-SSEEE-SSSSEEEHHHHHHHHCCSSSST---SSS
T ss_pred CCccchhhCCccccCCcCHHHHHHHHHHHHccCCcCCCCcCC
Confidence 899999999999999999999999999987754333689988
No 12
>COG5540 RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.74 E-value=4.7e-09 Score=105.61 Aligned_cols=48 Identities=38% Similarity=0.830 Sum_probs=40.7
Q ss_pred CCcccccccccccc---eeeccCCcccHhHHHHHHhcCCCCCCCCcccccCCcC
Q 007807 335 DDECAICREPMAKA---KKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFV 385 (589)
Q Consensus 335 ~~~C~IC~e~~~~~---~~lpC~H~Fh~~Cl~~Wl~~~~~~~~~CP~CR~~~~~ 385 (589)
+-+|+||++.+... +.+||+|.||..|+++|+..- +..||+||.++++
T Consensus 323 GveCaICms~fiK~d~~~vlPC~H~FH~~Cv~kW~~~y---~~~CPvCrt~iPP 373 (374)
T COG5540 323 GVECAICMSNFIKNDRLRVLPCDHRFHVGCVDKWLLGY---SNKCPVCRTAIPP 373 (374)
T ss_pred CceEEEEhhhhcccceEEEeccCceechhHHHHHHhhh---cccCCccCCCCCC
Confidence 45899999999654 467999999999999999743 5799999998875
No 13
>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A ....
Probab=98.71 E-value=7.3e-09 Score=79.02 Aligned_cols=46 Identities=39% Similarity=0.820 Sum_probs=40.3
Q ss_pred CCcccccccccccceeeccCCc-ccHhHHHHHHhcCCCCCCCCcccccCCc
Q 007807 335 DDECAICREPMAKAKKLLCNHL-FHLACLRSWLDQGLNEMYSCPTCRKPLF 384 (589)
Q Consensus 335 ~~~C~IC~e~~~~~~~lpC~H~-Fh~~Cl~~Wl~~~~~~~~~CP~CR~~~~ 384 (589)
+..|.||++...+...+||||. ||..|..+|+++ ...||+||+++.
T Consensus 2 ~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~~----~~~CP~Cr~~i~ 48 (50)
T PF13920_consen 2 DEECPICFENPRDVVLLPCGHLCFCEECAERLLKR----KKKCPICRQPIE 48 (50)
T ss_dssp HSB-TTTSSSBSSEEEETTCEEEEEHHHHHHHHHT----TSBBTTTTBB-S
T ss_pred cCCCccCCccCCceEEeCCCChHHHHHHhHHhccc----CCCCCcCChhhc
Confidence 4589999999999899999999 999999999986 699999999874
No 14
>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A.
Probab=98.66 E-value=1.1e-08 Score=73.93 Aligned_cols=38 Identities=29% Similarity=0.835 Sum_probs=33.3
Q ss_pred ccccccccccc-eeeccCCcccHhHHHHHHhcCCCCCCCCccc
Q 007807 338 CAICREPMAKA-KKLLCNHLFHLACLRSWLDQGLNEMYSCPTC 379 (589)
Q Consensus 338 C~IC~e~~~~~-~~lpC~H~Fh~~Cl~~Wl~~~~~~~~~CP~C 379 (589)
|+||++.+.++ +.++|||.||.+|+.+|+++ +..||+|
T Consensus 1 C~iC~~~~~~~~~~~~CGH~fC~~C~~~~~~~----~~~CP~C 39 (39)
T PF13923_consen 1 CPICLDELRDPVVVTPCGHSFCKECIEKYLEK----NPKCPVC 39 (39)
T ss_dssp ETTTTSB-SSEEEECTTSEEEEHHHHHHHHHC----TSB-TTT
T ss_pred CCCCCCcccCcCEECCCCCchhHHHHHHHHHC----cCCCcCC
Confidence 89999999999 57899999999999999998 5899998
No 15
>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)
Probab=98.65 E-value=2.2e-08 Score=73.22 Aligned_cols=44 Identities=43% Similarity=1.105 Sum_probs=37.2
Q ss_pred cccccccccccceeec-cCCcccHhHHHHHHhcCCCCCCCCcccccCC
Q 007807 337 ECAICREPMAKAKKLL-CNHLFHLACLRSWLDQGLNEMYSCPTCRKPL 383 (589)
Q Consensus 337 ~C~IC~e~~~~~~~lp-C~H~Fh~~Cl~~Wl~~~~~~~~~CP~CR~~~ 383 (589)
+|+||++.+.++..++ |+|.||..|++.|++++ ...||.||..+
T Consensus 1 ~C~iC~~~~~~~~~~~~C~H~~c~~C~~~~~~~~---~~~Cp~C~~~~ 45 (45)
T cd00162 1 ECPICLEEFREPVVLLPCGHVFCRSCIDKWLKSG---KNTCPLCRTPI 45 (45)
T ss_pred CCCcCchhhhCceEecCCCChhcHHHHHHHHHhC---cCCCCCCCCcC
Confidence 4999999997766665 99999999999999873 57899999753
No 16
>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger
Probab=98.64 E-value=1.7e-08 Score=84.52 Aligned_cols=51 Identities=37% Similarity=0.836 Sum_probs=39.6
Q ss_pred CCCccccccccccc------------cee-eccCCcccHhHHHHHHhcCCCCCCCCcccccCCcC
Q 007807 334 YDDECAICREPMAK------------AKK-LLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFV 385 (589)
Q Consensus 334 ~~~~C~IC~e~~~~------------~~~-lpC~H~Fh~~Cl~~Wl~~~~~~~~~CP~CR~~~~~ 385 (589)
.|+.|.||+..|+. |.. -.|+|.||..||.+|++++.. +..||+||++...
T Consensus 20 ~dd~CgICr~~fdg~Cp~Ck~Pgd~Cplv~g~C~H~FH~hCI~kWl~~~~~-~~~CPmCR~~w~~ 83 (85)
T PF12861_consen 20 NDDVCGICRMPFDGCCPDCKFPGDDCPLVWGKCSHNFHMHCILKWLSTQSS-KGQCPMCRQPWKF 83 (85)
T ss_pred CCCceeeEecccccCCCCccCCCCCCceeeccCccHHHHHHHHHHHccccC-CCCCCCcCCeeee
Confidence 46789999888862 222 279999999999999987533 5799999997643
No 17
>smart00504 Ubox Modified RING finger domain. Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination.
Probab=98.58 E-value=4.6e-08 Score=77.82 Aligned_cols=46 Identities=22% Similarity=0.292 Sum_probs=41.9
Q ss_pred CcccccccccccceeeccCCcccHhHHHHHHhcCCCCCCCCcccccCCcC
Q 007807 336 DECAICREPMAKAKKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFV 385 (589)
Q Consensus 336 ~~C~IC~e~~~~~~~lpC~H~Fh~~Cl~~Wl~~~~~~~~~CP~CR~~~~~ 385 (589)
..|+||.+.+++|+.++|||+|++.|+.+|+++ +..||.|+.++..
T Consensus 2 ~~Cpi~~~~~~~Pv~~~~G~v~~~~~i~~~~~~----~~~cP~~~~~~~~ 47 (63)
T smart00504 2 FLCPISLEVMKDPVILPSGQTYERRAIEKWLLS----HGTDPVTGQPLTH 47 (63)
T ss_pred cCCcCCCCcCCCCEECCCCCEEeHHHHHHHHHH----CCCCCCCcCCCCh
Confidence 369999999999999999999999999999987 5799999988743
No 18
>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid []. Many proteins containing a RING finger play a key role in the ubiquitination pathway []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1CHC_A 2ECW_A 2Y43_B 1V87_A 2DJB_A 2H0D_B 3RPG_C 3KNV_A 2CKL_B 1JM7_A ....
Probab=98.49 E-value=6.6e-08 Score=70.38 Aligned_cols=40 Identities=43% Similarity=1.032 Sum_probs=35.5
Q ss_pred ccccccccccce-eeccCCcccHhHHHHHHhcCCCCCCCCccc
Q 007807 338 CAICREPMAKAK-KLLCNHLFHLACLRSWLDQGLNEMYSCPTC 379 (589)
Q Consensus 338 C~IC~e~~~~~~-~lpC~H~Fh~~Cl~~Wl~~~~~~~~~CP~C 379 (589)
|+||++.+.++. .++|||.||..|+.+|++++ ....||.|
T Consensus 1 C~iC~~~~~~~~~~~~C~H~fC~~C~~~~~~~~--~~~~CP~C 41 (41)
T PF00097_consen 1 CPICLEPFEDPVILLPCGHSFCRDCLRKWLENS--GSVKCPLC 41 (41)
T ss_dssp ETTTSSBCSSEEEETTTSEEEEHHHHHHHHHHT--SSSBTTTT
T ss_pred CCcCCccccCCCEEecCCCcchHHHHHHHHHhc--CCccCCcC
Confidence 899999999998 78999999999999999842 26789998
No 19
>KOG0320 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.49 E-value=5.3e-08 Score=91.66 Aligned_cols=47 Identities=30% Similarity=0.733 Sum_probs=40.4
Q ss_pred Ccccccccccccc--eeeccCCcccHhHHHHHHhcCCCCCCCCcccccCCcCC
Q 007807 336 DECAICREPMAKA--KKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFVG 386 (589)
Q Consensus 336 ~~C~IC~e~~~~~--~~lpC~H~Fh~~Cl~~Wl~~~~~~~~~CP~CR~~~~~~ 386 (589)
..|+||++.+.+. +.+.|||+||..||+.-+.. ...||+||+.+..+
T Consensus 132 ~~CPiCl~~~sek~~vsTkCGHvFC~~Cik~alk~----~~~CP~C~kkIt~k 180 (187)
T KOG0320|consen 132 YKCPICLDSVSEKVPVSTKCGHVFCSQCIKDALKN----TNKCPTCRKKITHK 180 (187)
T ss_pred cCCCceecchhhccccccccchhHHHHHHHHHHHh----CCCCCCcccccchh
Confidence 4799999999764 45799999999999999988 58999999977543
No 20
>KOG1734 consensus Predicted RING-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.47 E-value=7.4e-06 Score=81.69 Aligned_cols=51 Identities=35% Similarity=0.821 Sum_probs=41.1
Q ss_pred CCCcccccccccccc----------eeeccCCcccHhHHHHHHhcCCCCCCCCcccccCCcCC
Q 007807 334 YDDECAICREPMAKA----------KKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFVG 386 (589)
Q Consensus 334 ~~~~C~IC~e~~~~~----------~~lpC~H~Fh~~Cl~~Wl~~~~~~~~~CP~CR~~~~~~ 386 (589)
+|..|+||-..++.. -+|.|+|+||..||+.|..-+. .++||.|++.+..+
T Consensus 223 ~d~vCaVCg~~~~~s~~eegvienty~LsCnHvFHEfCIrGWcivGK--kqtCPYCKekVdl~ 283 (328)
T KOG1734|consen 223 SDSVCAVCGQQIDVSVDEEGVIENTYKLSCNHVFHEFCIRGWCIVGK--KQTCPYCKEKVDLK 283 (328)
T ss_pred CcchhHhhcchheeecchhhhhhhheeeecccchHHHhhhhheeecC--CCCCchHHHHhhHh
Confidence 567899998887543 4789999999999999976542 58999999887643
No 21
>PHA02926 zinc finger-like protein; Provisional
Probab=98.46 E-value=1e-07 Score=92.93 Aligned_cols=52 Identities=29% Similarity=0.675 Sum_probs=39.1
Q ss_pred CCCccccccccccc---------ceeeccCCcccHhHHHHHHhcC--CCCCCCCcccccCCcC
Q 007807 334 YDDECAICREPMAK---------AKKLLCNHLFHLACLRSWLDQG--LNEMYSCPTCRKPLFV 385 (589)
Q Consensus 334 ~~~~C~IC~e~~~~---------~~~lpC~H~Fh~~Cl~~Wl~~~--~~~~~~CP~CR~~~~~ 385 (589)
.+.+|+||+|...+ +...+|+|.||..||+.|.+.. .....+||+||.....
T Consensus 169 kE~eCgICmE~I~eK~~~~eRrFGIL~~CnHsFCl~CIr~Wr~~r~~~~~~rsCPiCR~~f~~ 231 (242)
T PHA02926 169 KEKECGICYEVVYSKRLENDRYFGLLDSCNHIFCITCINIWHRTRRETGASDNCPICRTRFRN 231 (242)
T ss_pred CCCCCccCccccccccccccccccccCCCCchHHHHHHHHHHHhccccCcCCcCCCCcceeee
Confidence 46789999998633 2334899999999999999752 1123579999998653
No 22
>smart00184 RING Ring finger. E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s)
Probab=98.42 E-value=1.7e-07 Score=66.02 Aligned_cols=39 Identities=41% Similarity=1.054 Sum_probs=34.8
Q ss_pred ccccccccccceeeccCCcccHhHHHHHHhcCCCCCCCCccc
Q 007807 338 CAICREPMAKAKKLLCNHLFHLACLRSWLDQGLNEMYSCPTC 379 (589)
Q Consensus 338 C~IC~e~~~~~~~lpC~H~Fh~~Cl~~Wl~~~~~~~~~CP~C 379 (589)
|+||++....+..++|+|.||..|++.|+++. ...||+|
T Consensus 1 C~iC~~~~~~~~~~~C~H~~c~~C~~~~~~~~---~~~CP~C 39 (39)
T smart00184 1 CPICLEELKDPVVLPCGHTFCRSCIRKWLKSG---NNTCPIC 39 (39)
T ss_pred CCcCccCCCCcEEecCCChHHHHHHHHHHHhC---cCCCCCC
Confidence 89999998888899999999999999999842 5789988
No 23
>TIGR00599 rad18 DNA repair protein rad18. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.35 E-value=2.4e-07 Score=99.29 Aligned_cols=48 Identities=27% Similarity=0.546 Sum_probs=43.3
Q ss_pred CCCcccccccccccceeeccCCcccHhHHHHHHhcCCCCCCCCcccccCCcC
Q 007807 334 YDDECAICREPMAKAKKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFV 385 (589)
Q Consensus 334 ~~~~C~IC~e~~~~~~~lpC~H~Fh~~Cl~~Wl~~~~~~~~~CP~CR~~~~~ 385 (589)
....|+||.+.+..|+.++|||.||..|+..|+.. ...||+||..+..
T Consensus 25 ~~l~C~IC~d~~~~PvitpCgH~FCs~CI~~~l~~----~~~CP~Cr~~~~~ 72 (397)
T TIGR00599 25 TSLRCHICKDFFDVPVLTSCSHTFCSLCIRRCLSN----QPKCPLCRAEDQE 72 (397)
T ss_pred cccCCCcCchhhhCccCCCCCCchhHHHHHHHHhC----CCCCCCCCCcccc
Confidence 45689999999999999999999999999999987 4689999998764
No 24
>PF13445 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A.
Probab=98.31 E-value=2.8e-07 Score=68.01 Aligned_cols=39 Identities=31% Similarity=0.810 Sum_probs=23.4
Q ss_pred cccccccccc----ceeeccCCcccHhHHHHHHhcCCCCCCCCc
Q 007807 338 CAICREPMAK----AKKLLCNHLFHLACLRSWLDQGLNEMYSCP 377 (589)
Q Consensus 338 C~IC~e~~~~----~~~lpC~H~Fh~~Cl~~Wl~~~~~~~~~CP 377 (589)
|+||.| +.+ |+.|+|||+|+.+|+.++..++......||
T Consensus 1 CpIc~e-~~~~~n~P~~L~CGH~~c~~cl~~l~~~~~~~~~kCP 43 (43)
T PF13445_consen 1 CPICKE-FSTEENPPMVLPCGHVFCKDCLQKLSKKSDRNRFKCP 43 (43)
T ss_dssp -TTT-----TTSS-EEE-SSS-EEEHHHHHHHHHH-S-S-B--T
T ss_pred CCcccc-ccCCCCCCEEEeCccHHHHHHHHHHHhcCCCCeeeCc
Confidence 899999 877 899999999999999999986422245676
No 25
>COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.29 E-value=2.9e-07 Score=91.77 Aligned_cols=49 Identities=33% Similarity=0.726 Sum_probs=43.1
Q ss_pred CCcccccccccccceeeccCCcccHhHHHH-HHhcCCCCCCCCcccccCCcCC
Q 007807 335 DDECAICREPMAKAKKLLCNHLFHLACLRS-WLDQGLNEMYSCPTCRKPLFVG 386 (589)
Q Consensus 335 ~~~C~IC~e~~~~~~~lpC~H~Fh~~Cl~~-Wl~~~~~~~~~CP~CR~~~~~~ 386 (589)
|..|+||+|....+..++|||+||..||-. |-.+. ...||.||+.+.++
T Consensus 215 d~kC~lC~e~~~~ps~t~CgHlFC~~Cl~~~~t~~k---~~~CplCRak~~pk 264 (271)
T COG5574 215 DYKCFLCLEEPEVPSCTPCGHLFCLSCLLISWTKKK---YEFCPLCRAKVYPK 264 (271)
T ss_pred ccceeeeecccCCcccccccchhhHHHHHHHHHhhc---cccCchhhhhccch
Confidence 568999999999999999999999999988 87763 35599999988765
No 26
>KOG2164 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.26 E-value=6.2e-07 Score=96.76 Aligned_cols=55 Identities=27% Similarity=0.640 Sum_probs=45.5
Q ss_pred CCcccccccccccceeeccCCcccHhHHHHHHhcC-CCCCCCCcccccCCcCCCcc
Q 007807 335 DDECAICREPMAKAKKLLCNHLFHLACLRSWLDQG-LNEMYSCPTCRKPLFVGRRE 389 (589)
Q Consensus 335 ~~~C~IC~e~~~~~~~lpC~H~Fh~~Cl~~Wl~~~-~~~~~~CP~CR~~~~~~~~~ 389 (589)
+..||||+++...|+.+.|||+||..||-+.+... ......||+||..+..++..
T Consensus 186 ~~~CPICL~~~~~p~~t~CGHiFC~~CiLqy~~~s~~~~~~~CPiC~s~I~~kdl~ 241 (513)
T KOG2164|consen 186 DMQCPICLEPPSVPVRTNCGHIFCGPCILQYWNYSAIKGPCSCPICRSTITLKDLL 241 (513)
T ss_pred CCcCCcccCCCCcccccccCceeeHHHHHHHHhhhcccCCccCCchhhhcccccee
Confidence 67899999999999999999999999998876553 22357899999999876543
No 27
>KOG0828 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.20 E-value=6.7e-06 Score=87.89 Aligned_cols=49 Identities=37% Similarity=0.863 Sum_probs=38.9
Q ss_pred CCCcccccccccccc-----------------eeeccCCcccHhHHHHHHhcCCCCCCCCcccccCCcC
Q 007807 334 YDDECAICREPMAKA-----------------KKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFV 385 (589)
Q Consensus 334 ~~~~C~IC~e~~~~~-----------------~~lpC~H~Fh~~Cl~~Wl~~~~~~~~~CP~CR~~~~~ 385 (589)
...+|+||+.+.+-- ..+||.|+||..|+.+|.+.- ...||+||.++++
T Consensus 570 ~t~dC~ICMt~I~l~~~~s~~~~~~~~~~~nYm~tPC~HifH~~CL~~WMd~y---kl~CPvCR~pLPp 635 (636)
T KOG0828|consen 570 RTNDCVICMTPIDLRSTGSDCMVASMMVRRNYMLTPCHHIFHRQCLLQWMDTY---KLICPVCRCPLPP 635 (636)
T ss_pred ccccceEeccccceeeccCcchhhhhhhhccccccchHHHHHHHHHHHHHhhh---cccCCccCCCCCC
Confidence 456899999987520 135999999999999999842 4589999998864
No 28
>PF14634 zf-RING_5: zinc-RING finger domain
Probab=98.19 E-value=8.2e-07 Score=65.88 Aligned_cols=41 Identities=34% Similarity=0.844 Sum_probs=34.3
Q ss_pred cccccccccc---cceeeccCCcccHhHHHHHHhcCCCCCCCCccccc
Q 007807 337 ECAICREPMA---KAKKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRK 381 (589)
Q Consensus 337 ~C~IC~e~~~---~~~~lpC~H~Fh~~Cl~~Wl~~~~~~~~~CP~CR~ 381 (589)
.|+||++.+. .+..++|||+||..|+...... ...||+||+
T Consensus 1 ~C~~C~~~~~~~~~~~l~~CgH~~C~~C~~~~~~~----~~~CP~C~k 44 (44)
T PF14634_consen 1 HCNICFEKYSEERRPRLTSCGHIFCEKCLKKLKGK----SVKCPICRK 44 (44)
T ss_pred CCcCcCccccCCCCeEEcccCCHHHHHHHHhhcCC----CCCCcCCCC
Confidence 4999999992 3567899999999999998833 589999985
No 29
>KOG1493 consensus Anaphase-promoting complex (APC), subunit 11 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.10 E-value=7.3e-07 Score=72.31 Aligned_cols=50 Identities=34% Similarity=0.807 Sum_probs=38.5
Q ss_pred CCCccccccccccc------------ceee-ccCCcccHhHHHHHHhcCCCCCCCCcccccCCc
Q 007807 334 YDDECAICREPMAK------------AKKL-LCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLF 384 (589)
Q Consensus 334 ~~~~C~IC~e~~~~------------~~~l-pC~H~Fh~~Cl~~Wl~~~~~~~~~CP~CR~~~~ 384 (589)
.+++|-||+-+|+. |..+ .|.|.||..||.+|+..... +..||+||+...
T Consensus 19 ~~e~CGiCRm~Fdg~Cp~Ck~PgDdCPLv~G~C~h~fh~hCI~~wl~~~ts-q~~CPmcRq~~~ 81 (84)
T KOG1493|consen 19 PDETCGICRMPFDGCCPDCKLPGDDCPLVWGYCLHAFHAHCILKWLNTPTS-QGQCPMCRQTWQ 81 (84)
T ss_pred CCCccceEecccCCcCCCCcCCCCCCccHHHHHHHHHHHHHHHHHhcCccc-cccCCcchheeE
Confidence 34578888888863 1222 69999999999999987544 488999998764
No 30
>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis. Molecular chaperones recognise and contribute to the refolding of misfolded or unfolded proteins, whereas the ubiquitin-proteasome system mediates the degradation of such abnormal proteins. Ubiquitin-protein ligases (E3s) determine the substrate specificity for ubiquitylation and have been classified into HECT and RING-finger families. More recently, however, U-box proteins, which contain a domain (the U box) of about 70 amino acids that is conserved from yeast to humans, have been identified as a new type of E3 []. Members of the U-box family of proteins constitute a class of ubiquitin-protein ligases (E3s) distinct from the HECT-type and RING finger-containing E3 families []. Using yeast two-hybrid technology, all mammalian U-box proteins have been reported to interact with molecular chaperones or co-chaperones, including Hsp90, Hsp70, DnaJc7, EKN1, CRN, and VCP. This suggests that the function of U box-type E3s is to mediate the degradation of unfolded or misfolded proteins in conjunction with molecular chaperones as receptors that recognise such abnormal proteins [, ]. Unlike the RING finger domain, IPR001841 from INTERPRO, that is stabilised by Zn2+ ions coordinated by the cysteines and a histidine, the U-box scaffold is probably stabilised by a system of salt-bridges and hydrogen bonds. The charged and polar residues that participate in this network of bonds are more strongly conserved in the U-box proteins than in classic RING fingers, which supports their role in maintaining the stability of the U box. Thus, the U box appears to have evolved from a RING finger domain by appropriation of a new set of residues required to stabilise its structure, concomitant with the loss of the original, metal-chelating residues [].; GO: 0004842 ubiquitin-protein ligase activity, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 1T1H_A 2C2L_D 2C2V_V 1WGM_A 2KR4_A 3L1Z_B 3L1X_A 2KRE_A 3M63_A 2QIZ_A ....
Probab=98.05 E-value=2.3e-06 Score=70.59 Aligned_cols=48 Identities=27% Similarity=0.397 Sum_probs=38.8
Q ss_pred CcccccccccccceeeccCCcccHhHHHHHHhcCCCCCCCCcccccCCcCC
Q 007807 336 DECAICREPMAKAKKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFVG 386 (589)
Q Consensus 336 ~~C~IC~e~~~~~~~lpC~H~Fh~~Cl~~Wl~~~~~~~~~CP~CR~~~~~~ 386 (589)
..|+||.+.|.+|+.++|||+|.+.||..|+.++ +.+||.|+.++...
T Consensus 5 f~CpIt~~lM~dPVi~~~G~tyer~~I~~~l~~~---~~~~P~t~~~l~~~ 52 (73)
T PF04564_consen 5 FLCPITGELMRDPVILPSGHTYERSAIERWLEQN---GGTDPFTRQPLSES 52 (73)
T ss_dssp GB-TTTSSB-SSEEEETTSEEEEHHHHHHHHCTT---SSB-TTT-SB-SGG
T ss_pred cCCcCcCcHhhCceeCCcCCEEcHHHHHHHHHcC---CCCCCCCCCcCCcc
Confidence 3799999999999999999999999999999984 58999999887653
No 31
>KOG0287 consensus Postreplication repair protein RAD18 [Replication, recombination and repair]
Probab=98.05 E-value=1.2e-06 Score=89.56 Aligned_cols=48 Identities=29% Similarity=0.566 Sum_probs=44.0
Q ss_pred CcccccccccccceeeccCCcccHhHHHHHHhcCCCCCCCCcccccCCcCCC
Q 007807 336 DECAICREPMAKAKKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFVGR 387 (589)
Q Consensus 336 ~~C~IC~e~~~~~~~lpC~H~Fh~~Cl~~Wl~~~~~~~~~CP~CR~~~~~~~ 387 (589)
..|-||.|.|..|..+||+|.||.-||+..|.. +..||.|+.++.+.+
T Consensus 24 LRC~IC~eyf~ip~itpCsHtfCSlCIR~~L~~----~p~CP~C~~~~~Es~ 71 (442)
T KOG0287|consen 24 LRCGICFEYFNIPMITPCSHTFCSLCIRKFLSY----KPQCPTCCVTVTESD 71 (442)
T ss_pred HHHhHHHHHhcCceeccccchHHHHHHHHHhcc----CCCCCceecccchhh
Confidence 479999999999999999999999999999988 699999999887653
No 32
>COG5194 APC11 Component of SCF ubiquitin ligase and anaphase-promoting complex [Posttranslational modification, protein turnover, chaperones / Cell division and chromosome partitioning]
Probab=97.98 E-value=4.6e-06 Score=68.31 Aligned_cols=31 Identities=39% Similarity=0.876 Sum_probs=28.0
Q ss_pred ccCCcccHhHHHHHHhcCCCCCCCCcccccCCcCC
Q 007807 352 LCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFVG 386 (589)
Q Consensus 352 pC~H~Fh~~Cl~~Wl~~~~~~~~~CP~CR~~~~~~ 386 (589)
.|+|.||..||.+||.. ...||+||++....
T Consensus 53 ~CnHaFH~HCI~rWL~T----k~~CPld~q~w~~~ 83 (88)
T COG5194 53 VCNHAFHDHCIYRWLDT----KGVCPLDRQTWVLA 83 (88)
T ss_pred ecchHHHHHHHHHHHhh----CCCCCCCCceeEEe
Confidence 79999999999999998 58999999987654
No 33
>COG5432 RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms]
Probab=97.91 E-value=4.4e-06 Score=83.94 Aligned_cols=47 Identities=28% Similarity=0.579 Sum_probs=42.9
Q ss_pred CcccccccccccceeeccCCcccHhHHHHHHhcCCCCCCCCcccccCCcCC
Q 007807 336 DECAICREPMAKAKKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFVG 386 (589)
Q Consensus 336 ~~C~IC~e~~~~~~~lpC~H~Fh~~Cl~~Wl~~~~~~~~~CP~CR~~~~~~ 386 (589)
..|-||-+.+..|..++|||.||.-||+..|.. +..||+||.+....
T Consensus 26 lrC~IC~~~i~ip~~TtCgHtFCslCIR~hL~~----qp~CP~Cr~~~~es 72 (391)
T COG5432 26 LRCRICDCRISIPCETTCGHTFCSLCIRRHLGT----QPFCPVCREDPCES 72 (391)
T ss_pred HHhhhhhheeecceecccccchhHHHHHHHhcC----CCCCccccccHHhh
Confidence 579999999999999999999999999999988 69999999876543
No 34
>KOG2930 consensus SCF ubiquitin ligase, Rbx1 component [Posttranslational modification, protein turnover, chaperones]
Probab=97.81 E-value=7.7e-06 Score=70.22 Aligned_cols=30 Identities=37% Similarity=0.907 Sum_probs=26.9
Q ss_pred ccCCcccHhHHHHHHhcCCCCCCCCcccccCCcC
Q 007807 352 LCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFV 385 (589)
Q Consensus 352 pC~H~Fh~~Cl~~Wl~~~~~~~~~CP~CR~~~~~ 385 (589)
.|+|.||..||.+|+.+ ++.||+|.++...
T Consensus 80 ~CNHaFH~hCisrWlkt----r~vCPLdn~eW~~ 109 (114)
T KOG2930|consen 80 VCNHAFHFHCISRWLKT----RNVCPLDNKEWVF 109 (114)
T ss_pred ecchHHHHHHHHHHHhh----cCcCCCcCcceeE
Confidence 79999999999999998 6999999887543
No 35
>KOG2177 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.77 E-value=9.3e-06 Score=82.74 Aligned_cols=43 Identities=37% Similarity=0.702 Sum_probs=38.7
Q ss_pred CCCcccccccccccceeeccCCcccHhHHHHHHhcCCCCCCCCcccc
Q 007807 334 YDDECAICREPMAKAKKLLCNHLFHLACLRSWLDQGLNEMYSCPTCR 380 (589)
Q Consensus 334 ~~~~C~IC~e~~~~~~~lpC~H~Fh~~Cl~~Wl~~~~~~~~~CP~CR 380 (589)
....|+||++.+.+++.+||+|.||..|+..+... ...||.||
T Consensus 12 ~~~~C~iC~~~~~~p~~l~C~H~~c~~C~~~~~~~----~~~Cp~cr 54 (386)
T KOG2177|consen 12 EELTCPICLEYFREPVLLPCGHNFCRACLTRSWEG----PLSCPVCR 54 (386)
T ss_pred ccccChhhHHHhhcCccccccchHhHHHHHHhcCC----CcCCcccC
Confidence 45689999999999988899999999999998872 58999999
No 36
>KOG1785 consensus Tyrosine kinase negative regulator CBL [Defense mechanisms]
Probab=97.70 E-value=2.2e-05 Score=81.99 Aligned_cols=48 Identities=35% Similarity=0.720 Sum_probs=41.1
Q ss_pred CcccccccccccceeeccCCcccHhHHHHHHhcCCCCCCCCcccccCCcC
Q 007807 336 DECAICREPMAKAKKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFV 385 (589)
Q Consensus 336 ~~C~IC~e~~~~~~~lpC~H~Fh~~Cl~~Wl~~~~~~~~~CP~CR~~~~~ 385 (589)
..|-||-|.=++.+.-||||..|..|+..|-..+ +.++||.||.++.-
T Consensus 370 eLCKICaendKdvkIEPCGHLlCt~CLa~WQ~sd--~gq~CPFCRcEIKG 417 (563)
T KOG1785|consen 370 ELCKICAENDKDVKIEPCGHLLCTSCLAAWQDSD--EGQTCPFCRCEIKG 417 (563)
T ss_pred HHHHHhhccCCCcccccccchHHHHHHHhhcccC--CCCCCCceeeEecc
Confidence 3599999998888888999999999999997553 36899999998864
No 37
>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1. All proteins in this family for which functions are known are cyclin dependent protein kinases that are components of TFIIH, a complex that is involved in nucleotide excision repair and transcription initiation. Also known as MAT1 (menage a trois 1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.64 E-value=3.8e-05 Score=79.48 Aligned_cols=49 Identities=29% Similarity=0.706 Sum_probs=36.8
Q ss_pred CCcccccccc-cccce-e-e--ccCCcccHhHHHHHHhcCCCCCCCCcccccCCcCC
Q 007807 335 DDECAICREP-MAKAK-K-L--LCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFVG 386 (589)
Q Consensus 335 ~~~C~IC~e~-~~~~~-~-l--pC~H~Fh~~Cl~~Wl~~~~~~~~~CP~CR~~~~~~ 386 (589)
+..||+|... +..+. + + +|||.||..|+...+..+ ...||.|+.++...
T Consensus 3 ~~~CP~Ck~~~y~np~~kl~i~~CGH~~C~sCv~~l~~~~---~~~CP~C~~~lrk~ 56 (309)
T TIGR00570 3 DQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRG---SGSCPECDTPLRKN 56 (309)
T ss_pred CCCCCcCCCCCccCcccccccCCCCCcccHHHHHHHhcCC---CCCCCCCCCccchh
Confidence 4579999985 33332 1 2 799999999999966554 56899999887654
No 38
>KOG0824 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.63 E-value=2.2e-05 Score=79.77 Aligned_cols=50 Identities=26% Similarity=0.557 Sum_probs=42.2
Q ss_pred CCCcccccccccccceeeccCCcccHhHHHHHHhcCCCCCCCCcccccCCcCC
Q 007807 334 YDDECAICREPMAKAKKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFVG 386 (589)
Q Consensus 334 ~~~~C~IC~e~~~~~~~lpC~H~Fh~~Cl~~Wl~~~~~~~~~CP~CR~~~~~~ 386 (589)
.+.+|+||+.....|+.++|+|.||..||+.-..++ ..+|++||.++...
T Consensus 6 ~~~eC~IC~nt~n~Pv~l~C~HkFCyiCiKGsy~nd---k~~CavCR~pids~ 55 (324)
T KOG0824|consen 6 KKKECLICYNTGNCPVNLYCFHKFCYICIKGSYKND---KKTCAVCRFPIDST 55 (324)
T ss_pred cCCcceeeeccCCcCccccccchhhhhhhcchhhcC---CCCCceecCCCCcc
Confidence 356899999999999999999999999998655543 47899999998653
No 39
>COG5219 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=97.59 E-value=2e-05 Score=89.67 Aligned_cols=48 Identities=31% Similarity=0.796 Sum_probs=38.0
Q ss_pred CCccccccccccc-----c--eeeccCCcccHhHHHHHHhcCCCCCCCCcccccCCc
Q 007807 335 DDECAICREPMAK-----A--KKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLF 384 (589)
Q Consensus 335 ~~~C~IC~e~~~~-----~--~~lpC~H~Fh~~Cl~~Wl~~~~~~~~~CP~CR~~~~ 384 (589)
-++|+||...+.. | +.-.|.|.||..|+.+|..... +.+||.||.++.
T Consensus 1469 ~eECaICYsvL~~vdr~lPskrC~TCknKFH~~CLyKWf~Ss~--~s~CPlCRseit 1523 (1525)
T COG5219 1469 HEECAICYSVLDMVDRSLPSKRCATCKNKFHTRCLYKWFASSA--RSNCPLCRSEIT 1523 (1525)
T ss_pred cchhhHHHHHHHHHhccCCccccchhhhhhhHHHHHHHHHhcC--CCCCCccccccc
Confidence 4689999987652 2 2236999999999999998753 689999997764
No 40
>PF13705 TRC8_N: TRC8 N-terminal domain
Probab=97.53 E-value=0.0076 Score=66.39 Aligned_cols=105 Identities=16% Similarity=0.275 Sum_probs=83.9
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhhcCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCchhHHHHHHhH-HHHH
Q 007807 126 VWLTVLCSLKMFQALARDRLERLNASPSATPWTYFRVFSALLFVLAVDIFWIRMCLLLFKTLDSSMFLLLFFEPL-SVAF 204 (589)
Q Consensus 126 ~wF~~L~fLK~fhwL~~dRve~L~~Sp~~~~~~h~Rl~~lL~~ll~~D~~~i~~~~~~~~~~g~s~~ll~~fE~~-~l~~ 204 (589)
.+..+-.+++..|-+.+..+-.|.+|.+.+.++|+|.+++.++++++.+++. +..+++...+++++...-+. ...+
T Consensus 348 l~lv~ta~Lh~~~ei~~pvLmsL~As~~~s~~rH~R~L~v~~~Ll~~P~~~~---y~l~~~~~i~tWll~v~s~~~~t~v 424 (508)
T PF13705_consen 348 LFLVLTALLHSLHEIVDPVLMSLSASHNRSFWRHFRALSVCLFLLVFPLYLS---YYLWSFFPIDTWLLIVTSFCVETIV 424 (508)
T ss_pred HHHHHHHHHHHHHHHhHHHHHhccCCCCchHHHHHHHHHHHHHHHHHHHHHH---HHHHHhCChHHHHHHHHHHHHHHHH
Confidence 3444555899999999999999999999999999999999999999988754 45556677788776655543 3457
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccCCcccc
Q 007807 205 ETMQAILVHGFQLLDIWLHHSAGNSTNCA 233 (589)
Q Consensus 205 ~tl~~ll~~~~~l~d~~~~~~~~~~~~~~ 233 (589)
+++.++.+|++.++|.+++..|++-+|+.
T Consensus 425 kv~~sl~iY~Lf~vd~~~~~~WE~LDD~V 453 (508)
T PF13705_consen 425 KVLGSLAIYILFMVDARREEPWEKLDDYV 453 (508)
T ss_pred HHHHHHHHHHHHHHHhhcccchhhcccEE
Confidence 78888999999999998877777655543
No 41
>KOG0311 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.44 E-value=2.6e-05 Score=80.78 Aligned_cols=50 Identities=34% Similarity=0.646 Sum_probs=42.9
Q ss_pred CCCcccccccccccceee-ccCCcccHhHHHHHHhcCCCCCCCCcccccCCcCC
Q 007807 334 YDDECAICREPMAKAKKL-LCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFVG 386 (589)
Q Consensus 334 ~~~~C~IC~e~~~~~~~l-pC~H~Fh~~Cl~~Wl~~~~~~~~~CP~CR~~~~~~ 386 (589)
.+-.|+||++-++....+ .|.|.||.+||..-+..+ +..||+||+.+..+
T Consensus 42 ~~v~c~icl~llk~tmttkeClhrfc~~ci~~a~r~g---n~ecptcRk~l~Sk 92 (381)
T KOG0311|consen 42 IQVICPICLSLLKKTMTTKECLHRFCFDCIWKALRSG---NNECPTCRKKLVSK 92 (381)
T ss_pred hhhccHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhc---CCCCchHHhhcccc
Confidence 355899999999888776 499999999998888876 78999999988654
No 42
>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A.
Probab=97.43 E-value=2.7e-05 Score=63.71 Aligned_cols=51 Identities=29% Similarity=0.640 Sum_probs=24.5
Q ss_pred CCcccccccccc-c---ceee----ccCCcccHhHHHHHHhcCCC-------CCCCCcccccCCcC
Q 007807 335 DDECAICREPMA-K---AKKL----LCNHLFHLACLRSWLDQGLN-------EMYSCPTCRKPLFV 385 (589)
Q Consensus 335 ~~~C~IC~e~~~-~---~~~l----pC~H~Fh~~Cl~~Wl~~~~~-------~~~~CP~CR~~~~~ 385 (589)
+.+|.||.+... . +... .|++.||..||.+|+....+ -...||.|+.++.-
T Consensus 2 ~~~C~IC~~~~~~~~~~p~~~C~n~~C~~~fH~~CL~~wf~~~~~~~~~~~~~~G~CP~C~~~i~~ 67 (70)
T PF11793_consen 2 ELECGICYSYRLDDGEIPDVVCPNPSCGKKFHLLCLSEWFLSLEKSRQSFIPIFGECPYCSSPISW 67 (70)
T ss_dssp --S-SSS--SS-TT-----B--S-TT----B-SGGGHHHHHHHHSSS-TTT--EEE-TTT-SEEEG
T ss_pred CCCCCcCCcEecCCCCcCceEcCCcccCCHHHHHHHHHHHHHcccCCeeecccccCCcCCCCeeeE
Confidence 347999998764 2 2222 79999999999999875211 12359999988753
No 43
>PF14835 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM7_B.
Probab=97.37 E-value=4.5e-05 Score=60.53 Aligned_cols=45 Identities=29% Similarity=0.810 Sum_probs=24.3
Q ss_pred Ccccccccccccceee-ccCCcccHhHHHHHHhcCCCCCCCCcccccCCcCC
Q 007807 336 DECAICREPMAKAKKL-LCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFVG 386 (589)
Q Consensus 336 ~~C~IC~e~~~~~~~l-pC~H~Fh~~Cl~~Wl~~~~~~~~~CP~CR~~~~~~ 386 (589)
..|++|.+-+++|+.+ .|.|+||..|+..-+. ..||+|+.+...+
T Consensus 8 LrCs~C~~~l~~pv~l~~CeH~fCs~Ci~~~~~------~~CPvC~~Paw~q 53 (65)
T PF14835_consen 8 LRCSICFDILKEPVCLGGCEHIFCSSCIRDCIG------SECPVCHTPAWIQ 53 (65)
T ss_dssp TS-SSS-S--SS-B---SSS--B-TTTGGGGTT------TB-SSS--B-S-S
T ss_pred cCCcHHHHHhcCCceeccCccHHHHHHhHHhcC------CCCCCcCChHHHH
Confidence 4799999999999865 8999999999977443 4699999876554
No 44
>smart00744 RINGv The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity. The RING-variant domain is reminiscent of both the RING and the PHD domains and may represent an evolutionary intermediate. To describe this domain the term PHD/LAP domain has been used in the past. Extended description: The RING-variant (RINGv) domain contains a C4HC3 zinc-finger-like motif similar to the PHD domain, while some of the spacing between the Cys/His residues follow a pattern somewhat closer to that found in the RING domain. The RINGv domain, similar to the RING, PHD and LIM domains, is thought to bind two zinc ions co-ordinated by the highly conserved Cys and His residues. RING variant domain: C-x (2) -C-x(10-45)-C-x (1) -C-x (7) -H-x(2)-C-x(11-25)-C-x(2)-C As opposed to a PHD: C-x(1-2) -C-x (7-13)-C-x(2-4)-C-x(4-5)-H-x(2)-C-x(10-21)-C-x(2)-C Class
Probab=97.35 E-value=0.00015 Score=55.11 Aligned_cols=42 Identities=24% Similarity=0.694 Sum_probs=32.0
Q ss_pred ccccccccc--ccceeeccC-----CcccHhHHHHHHhcCCCCCCCCcccc
Q 007807 337 ECAICREPM--AKAKKLLCN-----HLFHLACLRSWLDQGLNEMYSCPTCR 380 (589)
Q Consensus 337 ~C~IC~e~~--~~~~~lpC~-----H~Fh~~Cl~~Wl~~~~~~~~~CP~CR 380 (589)
.|-||++.. +++...||. |.+|..|+.+|+.... ..+||+|+
T Consensus 1 ~CrIC~~~~~~~~~l~~PC~C~G~~~~vH~~Cl~~W~~~~~--~~~C~iC~ 49 (49)
T smart00744 1 ICRICHDEGDEGDPLVSPCRCKGSLKYVHQECLERWINESG--NKTCEICK 49 (49)
T ss_pred CccCCCCCCCCCCeeEeccccCCchhHHHHHHHHHHHHHcC--CCcCCCCC
Confidence 489999832 344567886 8999999999997642 35899995
No 45
>KOG4265 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.34 E-value=0.00011 Score=76.63 Aligned_cols=49 Identities=33% Similarity=0.661 Sum_probs=41.1
Q ss_pred cCCCcccccccccccceeeccCCc-ccHhHHHHHHhcCCCCCCCCcccccCCcC
Q 007807 333 AYDDECAICREPMAKAKKLLCNHL-FHLACLRSWLDQGLNEMYSCPTCRKPLFV 385 (589)
Q Consensus 333 ~~~~~C~IC~e~~~~~~~lpC~H~-Fh~~Cl~~Wl~~~~~~~~~CP~CR~~~~~ 385 (589)
+...+|.||+.+-.+...|||.|. -|..|-+.---+ ++.||+||+++..
T Consensus 288 ~~gkeCVIClse~rdt~vLPCRHLCLCs~Ca~~Lr~q----~n~CPICRqpi~~ 337 (349)
T KOG4265|consen 288 ESGKECVICLSESRDTVVLPCRHLCLCSGCAKSLRYQ----TNNCPICRQPIEE 337 (349)
T ss_pred cCCCeeEEEecCCcceEEecchhhehhHhHHHHHHHh----hcCCCccccchHh
Confidence 346789999999999999999998 788898776544 5799999998854
No 46
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=97.32 E-value=0.00014 Score=82.57 Aligned_cols=48 Identities=21% Similarity=0.573 Sum_probs=42.7
Q ss_pred CcccccccccccceeeccCCcccHhHHHHHHhcCCCCCCCCcccccCCcCC
Q 007807 336 DECAICREPMAKAKKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFVG 386 (589)
Q Consensus 336 ~~C~IC~e~~~~~~~lpC~H~Fh~~Cl~~Wl~~~~~~~~~CP~CR~~~~~~ 386 (589)
..|++|-+...+.+...|+|.||..|+..-+... +..||.|-..+...
T Consensus 644 LkCs~Cn~R~Kd~vI~kC~H~FC~~Cvq~r~etR---qRKCP~Cn~aFgan 691 (698)
T KOG0978|consen 644 LKCSVCNTRWKDAVITKCGHVFCEECVQTRYETR---QRKCPKCNAAFGAN 691 (698)
T ss_pred eeCCCccCchhhHHHHhcchHHHHHHHHHHHHHh---cCCCCCCCCCCCcc
Confidence 5799999999999999999999999999988764 68999999888754
No 47
>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.16 E-value=0.00018 Score=75.38 Aligned_cols=47 Identities=34% Similarity=0.899 Sum_probs=34.2
Q ss_pred Ccccccccccccceee----ccCCcccHhHHHHHHhcCCCCCCCCcccccCC
Q 007807 336 DECAICREPMAKAKKL----LCNHLFHLACLRSWLDQGLNEMYSCPTCRKPL 383 (589)
Q Consensus 336 ~~C~IC~e~~~~~~~l----pC~H~Fh~~Cl~~Wl~~~~~~~~~CP~CR~~~ 383 (589)
..|.||-+-+.....+ .|||+||..|+.+|.+-. +....||.||-.+
T Consensus 5 A~C~Ic~d~~p~~~~l~~i~~cGhifh~~cl~qwfe~~-Ps~R~cpic~ik~ 55 (465)
T KOG0827|consen 5 AECHICIDGRPNDHELGPIGTCGHIFHTTCLTQWFEGD-PSNRGCPICQIKL 55 (465)
T ss_pred ceeeEeccCCccccccccccchhhHHHHHHHHHHHccC-CccCCCCceeecc
Confidence 4799995444433333 599999999999999864 3236899999433
No 48
>KOG4172 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.14 E-value=0.00012 Score=55.89 Aligned_cols=47 Identities=32% Similarity=0.641 Sum_probs=37.0
Q ss_pred CCCcccccccccccceeeccCCc-ccHhHHH-HHHhcCCCCCCCCcccccCCc
Q 007807 334 YDDECAICREPMAKAKKLLCNHL-FHLACLR-SWLDQGLNEMYSCPTCRKPLF 384 (589)
Q Consensus 334 ~~~~C~IC~e~~~~~~~lpC~H~-Fh~~Cl~-~Wl~~~~~~~~~CP~CR~~~~ 384 (589)
-+++|.||+|.-.+.+.-.|||. .|..|-. .|..- +..||+||+++.
T Consensus 6 ~~dECTICye~pvdsVlYtCGHMCmCy~Cg~rl~~~~----~g~CPiCRapi~ 54 (62)
T KOG4172|consen 6 WSDECTICYEHPVDSVLYTCGHMCMCYACGLRLKKAL----HGCCPICRAPIK 54 (62)
T ss_pred cccceeeeccCcchHHHHHcchHHhHHHHHHHHHHcc----CCcCcchhhHHH
Confidence 34789999999888888899997 6778854 45433 689999999875
No 49
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.12 E-value=0.00041 Score=79.10 Aligned_cols=70 Identities=20% Similarity=0.454 Sum_probs=49.0
Q ss_pred HHHHHHHHHHHHHhhhCCCCChhhhhcCCCcccccccccccc-eeeccCCcccHhHHHHHHhcCCCCCCCCcccccCC
Q 007807 307 KGFIKLRIALGHLHAALPDATSEELRAYDDECAICREPMAKA-KKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPL 383 (589)
Q Consensus 307 ~~~~~~r~~~~~l~~~~p~~~~~el~~~~~~C~IC~e~~~~~-~~lpC~H~Fh~~Cl~~Wl~~~~~~~~~CP~CR~~~ 383 (589)
+...++++.++++++.+.+....+.......|..|...++-| +...|||.||.+|+. +. ...||.|+...
T Consensus 812 ~~Ie~yk~~i~e~r~~l~~lr~sa~i~q~skCs~C~~~LdlP~VhF~CgHsyHqhC~e---~~----~~~CP~C~~e~ 882 (933)
T KOG2114|consen 812 DAIEVYKKDIEEKRQELETLRTSAQIFQVSKCSACEGTLDLPFVHFLCGHSYHQHCLE---DK----EDKCPKCLPEL 882 (933)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcccceeeeeeecccCCccccceeeeecccHHHHHhhc---cC----cccCCccchhh
Confidence 334456667777766554443332223345899999999988 557999999999997 33 58999998743
No 50
>KOG4159 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.05 E-value=0.00031 Score=75.65 Aligned_cols=49 Identities=35% Similarity=0.686 Sum_probs=43.5
Q ss_pred cCCCcccccccccccceeeccCCcccHhHHHHHHhcCCCCCCCCcccccCCcC
Q 007807 333 AYDDECAICREPMAKAKKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFV 385 (589)
Q Consensus 333 ~~~~~C~IC~e~~~~~~~lpC~H~Fh~~Cl~~Wl~~~~~~~~~CP~CR~~~~~ 385 (589)
..+-.|.||...+..|+.+||||.||..||.+-+.+ ...||.||..+..
T Consensus 82 ~sef~c~vc~~~l~~pv~tpcghs~c~~Cl~r~ld~----~~~cp~Cr~~l~e 130 (398)
T KOG4159|consen 82 RSEFECCVCSRALYPPVVTPCGHSFCLECLDRSLDQ----ETECPLCRDELVE 130 (398)
T ss_pred cchhhhhhhHhhcCCCccccccccccHHHHHHHhcc----CCCCccccccccc
Confidence 355689999999999999999999999999887776 6899999998875
No 51
>KOG2879 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.97 E-value=0.002 Score=65.03 Aligned_cols=50 Identities=24% Similarity=0.645 Sum_probs=39.8
Q ss_pred cCCCcccccccccccceee-ccCCcccHhHHHHHHhcCCCCCCCCcccccCCc
Q 007807 333 AYDDECAICREPMAKAKKL-LCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLF 384 (589)
Q Consensus 333 ~~~~~C~IC~e~~~~~~~l-pC~H~Fh~~Cl~~Wl~~~~~~~~~CP~CR~~~~ 384 (589)
..+.+|++|-+.-..|... +|+|+||.-|+..-..-+ .+.+||.|-.+..
T Consensus 237 t~~~~C~~Cg~~PtiP~~~~~C~HiyCY~Ci~ts~~~~--asf~Cp~Cg~~~~ 287 (298)
T KOG2879|consen 237 TSDTECPVCGEPPTIPHVIGKCGHIYCYYCIATSRLWD--ASFTCPLCGENVE 287 (298)
T ss_pred cCCceeeccCCCCCCCeeeccccceeehhhhhhhhcch--hhcccCccCCCCc
Confidence 4677999999999888665 699999999998754431 1479999987765
No 52
>KOG3970 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.97 E-value=0.0032 Score=61.67 Aligned_cols=54 Identities=33% Similarity=0.853 Sum_probs=43.9
Q ss_pred cCCCcccccccccccc--eeeccCCcccHhHHHHHHhcC----CCCCCCCcccccCCcCC
Q 007807 333 AYDDECAICREPMAKA--KKLLCNHLFHLACLRSWLDQG----LNEMYSCPTCRKPLFVG 386 (589)
Q Consensus 333 ~~~~~C~IC~e~~~~~--~~lpC~H~Fh~~Cl~~Wl~~~----~~~~~~CP~CR~~~~~~ 386 (589)
+++..|..|-..+... ++|.|-|.||+.|+.+|-.+= .+....||.|..++++.
T Consensus 48 DY~pNC~LC~t~La~gdt~RLvCyhlfHW~ClneraA~lPanTAPaGyqCP~Cs~eiFPp 107 (299)
T KOG3970|consen 48 DYNPNCRLCNTPLASGDTTRLVCYHLFHWKCLNERAANLPANTAPAGYQCPCCSQEIFPP 107 (299)
T ss_pred CCCCCCceeCCccccCcceeehhhhhHHHHHhhHHHhhCCCcCCCCcccCCCCCCccCCC
Confidence 4567899999988754 678999999999999997541 34568999999998864
No 53
>KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.80 E-value=0.00058 Score=72.22 Aligned_cols=52 Identities=37% Similarity=0.764 Sum_probs=39.1
Q ss_pred CCCcccccccccccce-----e---eccCCcccHhHHHHHHhcC---CCCCCCCcccccCCcC
Q 007807 334 YDDECAICREPMAKAK-----K---LLCNHLFHLACLRSWLDQG---LNEMYSCPTCRKPLFV 385 (589)
Q Consensus 334 ~~~~C~IC~e~~~~~~-----~---lpC~H~Fh~~Cl~~Wl~~~---~~~~~~CP~CR~~~~~ 385 (589)
.+..|.||+|...+.. . .+|.|.||..|++.|-+.. ..-...||.||.....
T Consensus 160 ~~k~CGICme~i~ek~~~~~rfgilpnC~H~~Cl~Cir~wr~~~q~~~~~sksCP~CRv~s~~ 222 (344)
T KOG1039|consen 160 SEKECGICMETINEKAASERRFGILPNCNHSFCLNCIRKWRQATQFESKTSKSCPFCRVPSSF 222 (344)
T ss_pred ccccceehhhhccccchhhhhcccCCCcchhhhhcHhHhhhhhhccccccccCCCcccCcccc
Confidence 4568999999876543 1 3699999999999998443 1124799999987654
No 54
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=96.69 E-value=0.00076 Score=70.73 Aligned_cols=45 Identities=40% Similarity=0.916 Sum_probs=36.7
Q ss_pred CCcccccccccccc----eeeccCCcccHhHHHHHHhcCCCCCCCCccccc
Q 007807 335 DDECAICREPMAKA----KKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRK 381 (589)
Q Consensus 335 ~~~C~IC~e~~~~~----~~lpC~H~Fh~~Cl~~Wl~~~~~~~~~CP~CR~ 381 (589)
+..|..|-|.+... .-+||.|+||..|+.+.+.++. ..+||.||+
T Consensus 365 ~L~Cg~CGe~~Glk~e~LqALpCsHIfH~rCl~e~L~~n~--~rsCP~Crk 413 (518)
T KOG1941|consen 365 ELYCGLCGESIGLKNERLQALPCSHIFHLRCLQEILENNG--TRSCPNCRK 413 (518)
T ss_pred hhhhhhhhhhhcCCcccccccchhHHHHHHHHHHHHHhCC--CCCCccHHH
Confidence 45799999887432 3579999999999999998764 479999994
No 55
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.67 E-value=0.001 Score=70.39 Aligned_cols=48 Identities=31% Similarity=0.789 Sum_probs=38.8
Q ss_pred CCCcccccccccccc-----eeeccCCcccHhHHHHHHhcCCCCCCCCcccccCC
Q 007807 334 YDDECAICREPMAKA-----KKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPL 383 (589)
Q Consensus 334 ~~~~C~IC~e~~~~~-----~~lpC~H~Fh~~Cl~~Wl~~~~~~~~~CP~CR~~~ 383 (589)
...+|+||++.+..+ +.+.|||.|-.+||++|+.+.. ...||.|..+-
T Consensus 3 ~g~tcpiclds~~~~g~hr~vsl~cghlFgs~cie~wl~k~~--~~~cp~c~~ka 55 (463)
T KOG1645|consen 3 CGTTCPICLDSYTTAGNHRIVSLQCGHLFGSQCIEKWLGKKT--KMQCPLCSGKA 55 (463)
T ss_pred ccccCceeeeeeeecCceEEeeecccccccHHHHHHHHhhhh--hhhCcccCChh
Confidence 356899999998765 4568999999999999996432 47899997653
No 56
>KOG1571 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.49 E-value=0.003 Score=66.27 Aligned_cols=44 Identities=25% Similarity=0.576 Sum_probs=35.1
Q ss_pred CCCcccccccccccceeeccCCcccHhHHHHHHhcCCCCCCCCcccccCCc
Q 007807 334 YDDECAICREPMAKAKKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLF 384 (589)
Q Consensus 334 ~~~~C~IC~e~~~~~~~lpC~H~Fh~~Cl~~Wl~~~~~~~~~CP~CR~~~~ 384 (589)
..+.|.||.++..+.+-+||||.-| |..--.. ...||+||+.+.
T Consensus 304 ~p~lcVVcl~e~~~~~fvpcGh~cc--ct~cs~~-----l~~CPvCR~rI~ 347 (355)
T KOG1571|consen 304 QPDLCVVCLDEPKSAVFVPCGHVCC--CTLCSKH-----LPQCPVCRQRIR 347 (355)
T ss_pred CCCceEEecCCccceeeecCCcEEE--chHHHhh-----CCCCchhHHHHH
Confidence 5678999999999999999999955 6644333 367999998764
No 57
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=96.47 E-value=0.0012 Score=71.66 Aligned_cols=52 Identities=25% Similarity=0.672 Sum_probs=43.0
Q ss_pred CCcccccccccccceeeccCCcccHhHHHHHHhcC-CCCCCCCcccccCCcCC
Q 007807 335 DDECAICREPMAKAKKLLCNHLFHLACLRSWLDQG-LNEMYSCPTCRKPLFVG 386 (589)
Q Consensus 335 ~~~C~IC~e~~~~~~~lpC~H~Fh~~Cl~~Wl~~~-~~~~~~CP~CR~~~~~~ 386 (589)
+-.|.+|-++-+++....|.|.||+.|+.+....- ...+.+||+|...+..+
T Consensus 536 ~~~C~lc~d~aed~i~s~ChH~FCrlCi~eyv~~f~~~~nvtCP~C~i~LsiD 588 (791)
T KOG1002|consen 536 EVECGLCHDPAEDYIESSCHHKFCRLCIKEYVESFMENNNVTCPVCHIGLSID 588 (791)
T ss_pred ceeecccCChhhhhHhhhhhHHHHHHHHHHHHHhhhcccCCCCcccccccccc
Confidence 34799999999999999999999999998887542 12358999999887655
No 58
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=96.43 E-value=0.001 Score=74.91 Aligned_cols=33 Identities=24% Similarity=0.394 Sum_probs=28.6
Q ss_pred eeccCCcccHhHHHHHHhcCCCCCCCCcccccCCcCC
Q 007807 350 KLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFVG 386 (589)
Q Consensus 350 ~lpC~H~Fh~~Cl~~Wl~~~~~~~~~CP~CR~~~~~~ 386 (589)
..+|+|.||..|+..|-.. .++||+||..+..-
T Consensus 141 ~k~c~H~FC~~Ci~sWsR~----aqTCPiDR~EF~~v 173 (1134)
T KOG0825|consen 141 EKHTAHYFCEECVGSWSRC----AQTCPVDRGEFGEV 173 (1134)
T ss_pred ccccccccHHHHhhhhhhh----cccCchhhhhhhee
Confidence 4589999999999999988 58999999987543
No 59
>KOG4445 consensus Uncharacterized conserved protein, contains RWD domain [Function unknown]
Probab=96.37 E-value=0.0015 Score=66.41 Aligned_cols=52 Identities=29% Similarity=0.693 Sum_probs=39.9
Q ss_pred CCcccccccccccc---eeeccCCcccHhHHHHHHhcC-------------------CCCCCCCcccccCCcCC
Q 007807 335 DDECAICREPMAKA---KKLLCNHLFHLACLRSWLDQG-------------------LNEMYSCPTCRKPLFVG 386 (589)
Q Consensus 335 ~~~C~IC~e~~~~~---~~lpC~H~Fh~~Cl~~Wl~~~-------------------~~~~~~CP~CR~~~~~~ 386 (589)
...|.||+-.|.+. .+++|.|.||..|+.+.|..- .+....||+||..+...
T Consensus 115 ~gqCvICLygfa~~~~ft~T~C~Hy~H~~ClaRyl~~~~~~lrqe~q~~~~~~qh~~~~~eavcpVcre~i~~e 188 (368)
T KOG4445|consen 115 NGQCVICLYGFASSPAFTVTACDHYMHFACLARYLTECLTGLRQEIQDAQKERQHMKEQVEAVCPVCRERIKIE 188 (368)
T ss_pred CCceEEEEEeecCCCceeeehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhhhhHhhhhcccc
Confidence 45899999999764 577999999999998776430 12246799999998654
No 60
>KOG0297 consensus TNF receptor-associated factor [Signal transduction mechanisms]
Probab=96.36 E-value=0.0015 Score=70.89 Aligned_cols=50 Identities=28% Similarity=0.580 Sum_probs=44.0
Q ss_pred cCCCccccccccccccee-eccCCcccHhHHHHHHhcCCCCCCCCcccccCCcCC
Q 007807 333 AYDDECAICREPMAKAKK-LLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFVG 386 (589)
Q Consensus 333 ~~~~~C~IC~e~~~~~~~-lpC~H~Fh~~Cl~~Wl~~~~~~~~~CP~CR~~~~~~ 386 (589)
+.+..|++|...+.+|.. +.|||.||..|+.+|+.+ +..||.|+..+...
T Consensus 19 ~~~l~C~~C~~vl~~p~~~~~cgh~fC~~C~~~~~~~----~~~cp~~~~~~~~~ 69 (391)
T KOG0297|consen 19 DENLLCPICMSVLRDPVQTTTCGHRFCAGCLLESLSN----HQKCPVCRQELTQA 69 (391)
T ss_pred cccccCccccccccCCCCCCCCCCcccccccchhhcc----CcCCcccccccchh
Confidence 456789999999999988 599999999999999998 68999998876543
No 61
>KOG4692 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.24 E-value=0.003 Score=65.62 Aligned_cols=48 Identities=23% Similarity=0.426 Sum_probs=42.8
Q ss_pred CCCcccccccccccceeeccCCcccHhHHHHHHhcCCCCCCCCcccccCCcC
Q 007807 334 YDDECAICREPMAKAKKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFV 385 (589)
Q Consensus 334 ~~~~C~IC~e~~~~~~~lpC~H~Fh~~Cl~~Wl~~~~~~~~~CP~CR~~~~~ 385 (589)
+|+.|+||...--.++..||+|.-|..||.+.+-+ .+.|=.|+..+..
T Consensus 421 Ed~lCpICyA~pi~Avf~PC~H~SC~~CI~qHlmN----~k~CFfCktTv~~ 468 (489)
T KOG4692|consen 421 EDNLCPICYAGPINAVFAPCSHRSCYGCITQHLMN----CKRCFFCKTTVID 468 (489)
T ss_pred ccccCcceecccchhhccCCCCchHHHHHHHHHhc----CCeeeEecceeee
Confidence 56789999998778888999999999999999988 6999999988764
No 62
>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]
Probab=96.08 E-value=0.002 Score=61.92 Aligned_cols=44 Identities=23% Similarity=0.436 Sum_probs=38.4
Q ss_pred CcccccccccccceeeccCCcccHhHHHHHHhcCCCCCCCCcccccCC
Q 007807 336 DECAICREPMAKAKKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPL 383 (589)
Q Consensus 336 ~~C~IC~e~~~~~~~lpC~H~Fh~~Cl~~Wl~~~~~~~~~CP~CR~~~ 383 (589)
-.|.||.+++..|+.+.|||.||..|--.-.+. ...|-+|-+..
T Consensus 197 F~C~iCKkdy~spvvt~CGH~FC~~Cai~~y~k----g~~C~~Cgk~t 240 (259)
T COG5152 197 FLCGICKKDYESPVVTECGHSFCSLCAIRKYQK----GDECGVCGKAT 240 (259)
T ss_pred eeehhchhhccchhhhhcchhHHHHHHHHHhcc----CCcceecchhh
Confidence 379999999999999999999999998776666 58999997654
No 63
>COG5222 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=95.95 E-value=0.0059 Score=62.11 Aligned_cols=44 Identities=25% Similarity=0.661 Sum_probs=36.8
Q ss_pred CCcccccccccccceeec-cCCcccHhHHHHHHhcCCCCCCCCccccc
Q 007807 335 DDECAICREPMAKAKKLL-CNHLFHLACLRSWLDQGLNEMYSCPTCRK 381 (589)
Q Consensus 335 ~~~C~IC~e~~~~~~~lp-C~H~Fh~~Cl~~Wl~~~~~~~~~CP~CR~ 381 (589)
...|+.|..-+..+.++| |+|.||.+||..-|... ...||.|.+
T Consensus 274 ~LkCplc~~Llrnp~kT~cC~~~fc~eci~~al~ds---Df~CpnC~r 318 (427)
T COG5222 274 SLKCPLCHCLLRNPMKTPCCGHTFCDECIGTALLDS---DFKCPNCSR 318 (427)
T ss_pred cccCcchhhhhhCcccCccccchHHHHHHhhhhhhc---cccCCCccc
Confidence 367999999999998885 88999999998766442 589999965
No 64
>PF10367 Vps39_2: Vacuolar sorting protein 39 domain 2; InterPro: IPR019453 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised In Vps39 this domain is involved in localisation and in mediating the interactions with Vps11 [].
Probab=95.93 E-value=0.013 Score=51.19 Aligned_cols=30 Identities=23% Similarity=0.882 Sum_probs=24.9
Q ss_pred CCCcccccccccccc--eeeccCCcccHhHHH
Q 007807 334 YDDECAICREPMAKA--KKLLCNHLFHLACLR 363 (589)
Q Consensus 334 ~~~~C~IC~e~~~~~--~~lpC~H~Fh~~Cl~ 363 (589)
.+..|++|...+... ...||||+||..|++
T Consensus 77 ~~~~C~vC~k~l~~~~f~~~p~~~v~H~~C~~ 108 (109)
T PF10367_consen 77 ESTKCSVCGKPLGNSVFVVFPCGHVVHYSCIK 108 (109)
T ss_pred CCCCccCcCCcCCCceEEEeCCCeEEeccccc
Confidence 456899999998765 345999999999974
No 65
>PF11789 zf-Nse: Zinc-finger of the MIZ type in Nse subunit; PDB: 2YU4_A 3HTK_C.
Probab=95.88 E-value=0.0033 Score=49.34 Aligned_cols=43 Identities=21% Similarity=0.517 Sum_probs=29.9
Q ss_pred CCCcccccccccccceee-ccCCcccHhHHHHHHhcCCCCCCCCcc
Q 007807 334 YDDECAICREPMAKAKKL-LCNHLFHLACLRSWLDQGLNEMYSCPT 378 (589)
Q Consensus 334 ~~~~C~IC~e~~~~~~~l-pC~H~Fh~~Cl~~Wl~~~~~~~~~CP~ 378 (589)
.+..|+|.+..+++|++- .|+|+|-+..|.++++++ ....||+
T Consensus 10 ~~~~CPiT~~~~~~PV~s~~C~H~fek~aI~~~i~~~--~~~~CPv 53 (57)
T PF11789_consen 10 ISLKCPITLQPFEDPVKSKKCGHTFEKEAILQYIQRN--GSKRCPV 53 (57)
T ss_dssp --SB-TTTSSB-SSEEEESSS--EEEHHHHHHHCTTT--S-EE-SC
T ss_pred eccCCCCcCChhhCCcCcCCCCCeecHHHHHHHHHhc--CCCCCCC
Confidence 356899999999999775 899999999999999432 2578998
No 66
>KOG2660 consensus Locus-specific chromosome binding proteins [Function unknown]
Probab=95.87 E-value=0.0029 Score=65.57 Aligned_cols=47 Identities=26% Similarity=0.622 Sum_probs=40.9
Q ss_pred Ccccccccccccceee-ccCCcccHhHHHHHHhcCCCCCCCCcccccCCcCC
Q 007807 336 DECAICREPMAKAKKL-LCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFVG 386 (589)
Q Consensus 336 ~~C~IC~e~~~~~~~l-pC~H~Fh~~Cl~~Wl~~~~~~~~~CP~CR~~~~~~ 386 (589)
.+|.+|...+-++..+ -|-|.||+.||...+.. ...||+|...+...
T Consensus 16 itC~LC~GYliDATTI~eCLHTFCkSCivk~l~~----~~~CP~C~i~ih~t 63 (331)
T KOG2660|consen 16 ITCRLCGGYLIDATTITECLHTFCKSCIVKYLEE----SKYCPTCDIVIHKT 63 (331)
T ss_pred eehhhccceeecchhHHHHHHHHHHHHHHHHHHH----hccCCccceeccCc
Confidence 4799999999888665 69999999999999988 69999998877654
No 67
>KOG1813 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.53 E-value=0.0042 Score=63.44 Aligned_cols=46 Identities=22% Similarity=0.429 Sum_probs=40.0
Q ss_pred CCcccccccccccceeeccCCcccHhHHHHHHhcCCCCCCCCcccccCCc
Q 007807 335 DDECAICREPMAKAKKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLF 384 (589)
Q Consensus 335 ~~~C~IC~e~~~~~~~lpC~H~Fh~~Cl~~Wl~~~~~~~~~CP~CR~~~~ 384 (589)
...|-||...|..|+++.|+|.||..|-.+-+++ ...|++|-+...
T Consensus 241 Pf~c~icr~~f~~pVvt~c~h~fc~~ca~~~~qk----~~~c~vC~~~t~ 286 (313)
T KOG1813|consen 241 PFKCFICRKYFYRPVVTKCGHYFCEVCALKPYQK----GEKCYVCSQQTH 286 (313)
T ss_pred CccccccccccccchhhcCCceeehhhhcccccc----CCcceecccccc
Confidence 3469999999999999999999999998777776 589999977653
No 68
>KOG1428 consensus Inhibitor of type V adenylyl cyclases/Neuronal presynaptic protein Highwire/PAM/RPM-1 [Signal transduction mechanisms]
Probab=94.91 E-value=0.011 Score=70.32 Aligned_cols=53 Identities=38% Similarity=0.741 Sum_probs=40.5
Q ss_pred cCCCccccccccc---ccceeeccCCcccHhHHHHHHhcCC--C----CCCCCcccccCCcC
Q 007807 333 AYDDECAICREPM---AKAKKLLCNHLFHLACLRSWLDQGL--N----EMYSCPTCRKPLFV 385 (589)
Q Consensus 333 ~~~~~C~IC~e~~---~~~~~lpC~H~Fh~~Cl~~Wl~~~~--~----~~~~CP~CR~~~~~ 385 (589)
+.|+.|.||..+- ..+.+|.|+|+||.+|.+.-|++.- + .-.+||+|+.++..
T Consensus 3484 D~DDmCmICFTE~L~AAP~IqL~C~HiFHlqC~R~vLE~RW~GPRItF~FisCPiC~n~InH 3545 (3738)
T KOG1428|consen 3484 DADDMCMICFTEALSAAPAIQLDCSHIFHLQCCRRVLENRWLGPRITFGFISCPICKNKINH 3545 (3738)
T ss_pred ccCceEEEEehhhhCCCcceecCCccchhHHHHHHHHHhcccCCeeEEeeeecccccchhhh
Confidence 4578899998764 2357899999999999998887641 1 12479999998865
No 69
>KOG4275 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=94.66 E-value=0.008 Score=61.16 Aligned_cols=42 Identities=31% Similarity=0.680 Sum_probs=33.7
Q ss_pred CCcccccccccccceeeccCCc-ccHhHHHHHHhcCCCCCCCCcccccCCc
Q 007807 335 DDECAICREPMAKAKKLLCNHL-FHLACLRSWLDQGLNEMYSCPTCRKPLF 384 (589)
Q Consensus 335 ~~~C~IC~e~~~~~~~lpC~H~-Fh~~Cl~~Wl~~~~~~~~~CP~CR~~~~ 384 (589)
+..|.||++...+.+.|+|||. -|..|-.. -+.||+||+.+.
T Consensus 300 ~~LC~ICmDaP~DCvfLeCGHmVtCt~CGkr--------m~eCPICRqyi~ 342 (350)
T KOG4275|consen 300 RRLCAICMDAPRDCVFLECGHMVTCTKCGKR--------MNECPICRQYIV 342 (350)
T ss_pred HHHHHHHhcCCcceEEeecCcEEeehhhccc--------cccCchHHHHHH
Confidence 5679999999999999999995 46666432 368999998764
No 70
>PHA02825 LAP/PHD finger-like protein; Provisional
Probab=94.30 E-value=0.034 Score=52.20 Aligned_cols=51 Identities=27% Similarity=0.689 Sum_probs=38.3
Q ss_pred cCCCcccccccccccceeeccCC-----cccHhHHHHHHhcCCCCCCCCcccccCCcCC
Q 007807 333 AYDDECAICREPMAKAKKLLCNH-----LFHLACLRSWLDQGLNEMYSCPTCRKPLFVG 386 (589)
Q Consensus 333 ~~~~~C~IC~e~~~~~~~lpC~H-----~Fh~~Cl~~Wl~~~~~~~~~CP~CR~~~~~~ 386 (589)
..+..|=||.++-++ ..-||.. .-|.+|++.|+..+ +...|+.|+.+....
T Consensus 6 ~~~~~CRIC~~~~~~-~~~PC~CkGs~k~VH~sCL~rWi~~s--~~~~CeiC~~~Y~i~ 61 (162)
T PHA02825 6 LMDKCCWICKDEYDV-VTNYCNCKNENKIVHKECLEEWINTS--KNKSCKICNGPYNIK 61 (162)
T ss_pred CCCCeeEecCCCCCC-ccCCcccCCCchHHHHHHHHHHHhcC--CCCcccccCCeEEEE
Confidence 456789999998653 3457664 45999999999875 258999999887543
No 71
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.19 E-value=0.056 Score=62.68 Aligned_cols=35 Identities=29% Similarity=0.598 Sum_probs=27.4
Q ss_pred cCCCccccccccccc-c-eeeccCCcccHhHHHHHHh
Q 007807 333 AYDDECAICREPMAK-A-KKLLCNHLFHLACLRSWLD 367 (589)
Q Consensus 333 ~~~~~C~IC~e~~~~-~-~~lpC~H~Fh~~Cl~~Wl~ 367 (589)
+.++.|.+|.-++.. | .+.||||.||+.|+.+-..
T Consensus 815 ep~d~C~~C~~~ll~~pF~vf~CgH~FH~~Cl~~~v~ 851 (911)
T KOG2034|consen 815 EPQDSCDHCGRPLLIKPFYVFPCGHCFHRDCLIRHVL 851 (911)
T ss_pred cCccchHHhcchhhcCcceeeeccchHHHHHHHHHHH
Confidence 346789999988754 3 5669999999999987643
No 72
>KOG1814 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=94.08 E-value=0.083 Score=56.44 Aligned_cols=56 Identities=27% Similarity=0.464 Sum_probs=38.2
Q ss_pred ChhhhhcCCCccccccccccc---ceeeccCCcccHhHHHHHHhcC----CCCCCCCcccccC
Q 007807 327 TSEELRAYDDECAICREPMAK---AKKLLCNHLFHLACLRSWLDQG----LNEMYSCPTCRKP 382 (589)
Q Consensus 327 ~~~el~~~~~~C~IC~e~~~~---~~~lpC~H~Fh~~Cl~~Wl~~~----~~~~~~CP~CR~~ 382 (589)
+.+......-.|.||.++..- -+.+||+|+||+.|++...... .-+...||-|...
T Consensus 176 ~~~~F~~slf~C~ICf~e~~G~~c~~~lpC~Hv~Ck~C~kdY~~~~i~eg~v~~l~Cp~~~C~ 238 (445)
T KOG1814|consen 176 TLEKFVNSLFDCCICFEEQMGQHCFKFLPCSHVFCKSCLKDYFTIQIQEGQVSCLKCPDPKCG 238 (445)
T ss_pred HHHHHHhhcccceeeehhhcCcceeeecccchHHHHHHHHHHHHHhhhcceeeeecCCCCCCc
Confidence 344444455689999998643 3678999999999999886432 1123567766543
No 73
>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=93.80 E-value=0.042 Score=57.20 Aligned_cols=54 Identities=22% Similarity=0.498 Sum_probs=41.0
Q ss_pred CChhhhhcCCCcccccccccccceeeccCCcccHhHHHH--HHhcCCCCCCCCcccccCC
Q 007807 326 ATSEELRAYDDECAICREPMAKAKKLLCNHLFHLACLRS--WLDQGLNEMYSCPTCRKPL 383 (589)
Q Consensus 326 ~~~~el~~~~~~C~IC~e~~~~~~~lpC~H~Fh~~Cl~~--Wl~~~~~~~~~CP~CR~~~ 383 (589)
.+.++..+++..|.||-+...-.-.+||+|.-|-.|--. -|-. .+.||.||...
T Consensus 52 sSaddtDEen~~C~ICA~~~TYs~~~PC~H~~CH~Ca~RlRALY~----~K~C~~CrTE~ 107 (493)
T COG5236 52 SSADDTDEENMNCQICAGSTTYSARYPCGHQICHACAVRLRALYM----QKGCPLCRTET 107 (493)
T ss_pred ccccccccccceeEEecCCceEEEeccCCchHHHHHHHHHHHHHh----ccCCCcccccc
Confidence 334554456678999999988888999999999999532 2333 48999999874
No 74
>PHA02862 5L protein; Provisional
Probab=93.70 E-value=0.043 Score=50.60 Aligned_cols=48 Identities=21% Similarity=0.706 Sum_probs=37.1
Q ss_pred CCcccccccccccceeeccC-----CcccHhHHHHHHhcCCCCCCCCcccccCCcC
Q 007807 335 DDECAICREPMAKAKKLLCN-----HLFHLACLRSWLDQGLNEMYSCPTCRKPLFV 385 (589)
Q Consensus 335 ~~~C~IC~e~~~~~~~lpC~-----H~Fh~~Cl~~Wl~~~~~~~~~CP~CR~~~~~ 385 (589)
++.|=||.++-++. .-||. ..-|.+|+.+|+... +...||.|+.+...
T Consensus 2 ~diCWIC~~~~~e~-~~PC~C~GS~K~VHq~CL~~WIn~S--~k~~CeLCkteY~I 54 (156)
T PHA02862 2 SDICWICNDVCDER-NNFCGCNEEYKVVHIKCMQLWINYS--KKKECNLCKTKYNI 54 (156)
T ss_pred CCEEEEecCcCCCC-cccccccCcchhHHHHHHHHHHhcC--CCcCccCCCCeEEE
Confidence 46899999986544 45765 467999999999653 36899999998754
No 75
>PF14570 zf-RING_4: RING/Ubox like zinc-binding domain; PDB: 1E4U_A 1UR6_B.
Probab=93.55 E-value=0.038 Score=41.70 Aligned_cols=42 Identities=26% Similarity=0.680 Sum_probs=20.7
Q ss_pred ccccccccccc--eee--ccCCcccHhHHHHHHhcCCCCCCCCcccccC
Q 007807 338 CAICREPMAKA--KKL--LCNHLFHLACLRSWLDQGLNEMYSCPTCRKP 382 (589)
Q Consensus 338 C~IC~e~~~~~--~~l--pC~H~Fh~~Cl~~Wl~~~~~~~~~CP~CR~~ 382 (589)
|++|.++++.. ... +|++..|..|...-++.. ...||-||++
T Consensus 1 cp~C~e~~d~~d~~~~PC~Cgf~IC~~C~~~i~~~~---~g~CPgCr~~ 46 (48)
T PF14570_consen 1 CPLCDEELDETDKDFYPCECGFQICRFCYHDILENE---GGRCPGCREP 46 (48)
T ss_dssp -TTTS-B--CCCTT--SSTTS----HHHHHHHTTSS----SB-TTT--B
T ss_pred CCCcccccccCCCccccCcCCCcHHHHHHHHHHhcc---CCCCCCCCCC
Confidence 78999998543 223 688988999977766532 6899999985
No 76
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.38 E-value=0.077 Score=52.98 Aligned_cols=50 Identities=18% Similarity=0.324 Sum_probs=41.1
Q ss_pred CCcccccccccccce---ee-ccCCcccHhHHHHHHhcCCCCCCCCcccccCCcCCCc
Q 007807 335 DDECAICREPMAKAK---KL-LCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFVGRR 388 (589)
Q Consensus 335 ~~~C~IC~e~~~~~~---~l-pC~H~Fh~~Cl~~Wl~~~~~~~~~CP~CR~~~~~~~~ 388 (589)
...|++|.+.+.+.. .| ||||+|+.+|.+..+.. ...||+|-.++.+.+.
T Consensus 221 ryiCpvtrd~LtNt~~ca~Lr~sg~Vv~~ecvEklir~----D~v~pv~d~plkdrdi 274 (303)
T KOG3039|consen 221 RYICPVTRDTLTNTTPCAVLRPSGHVVTKECVEKLIRK----DMVDPVTDKPLKDRDI 274 (303)
T ss_pred ceecccchhhhcCccceEEeccCCcEeeHHHHHHhccc----cccccCCCCcCcccce
Confidence 347999999997642 33 99999999999998887 5899999988876543
No 77
>PF14447 Prok-RING_4: Prokaryotic RING finger family 4
Probab=93.29 E-value=0.04 Score=42.60 Aligned_cols=45 Identities=27% Similarity=0.554 Sum_probs=35.9
Q ss_pred CcccccccccccceeeccCCcccHhHHHHHHhcCCCCCCCCcccccCCcCC
Q 007807 336 DECAICREPMAKAKKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFVG 386 (589)
Q Consensus 336 ~~C~IC~e~~~~~~~lpC~H~Fh~~Cl~~Wl~~~~~~~~~CP~CR~~~~~~ 386 (589)
..|..|...-.....+||+|.-+..|-..+- -+.||.|-+++...
T Consensus 8 ~~~~~~~~~~~~~~~~pCgH~I~~~~f~~~r------YngCPfC~~~~~~~ 52 (55)
T PF14447_consen 8 QPCVFCGFVGTKGTVLPCGHLICDNCFPGER------YNGCPFCGTPFEFD 52 (55)
T ss_pred eeEEEccccccccccccccceeeccccChhh------ccCCCCCCCcccCC
Confidence 3688888777778889999999999976543 36899999988654
No 78
>KOG2932 consensus E3 ubiquitin ligase involved in ubiquitination of E-cadherin complex [Posttranslational modification, protein turnover, chaperones]
Probab=93.24 E-value=0.082 Score=54.39 Aligned_cols=42 Identities=36% Similarity=0.775 Sum_probs=30.0
Q ss_pred ccccccccccc-ceeeccCCcccHhHHHHHHhcCCCCCCCCcccccCCc
Q 007807 337 ECAICREPMAK-AKKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLF 384 (589)
Q Consensus 337 ~C~IC~e~~~~-~~~lpC~H~Fh~~Cl~~Wl~~~~~~~~~CP~CR~~~~ 384 (589)
.|--|--.... .+.+||+|+||.+|-+. +. .+.||.|-..+.
T Consensus 92 fCd~Cd~PI~IYGRmIPCkHvFCl~CAr~--~~----dK~Cp~C~d~Vq 134 (389)
T KOG2932|consen 92 FCDRCDFPIAIYGRMIPCKHVFCLECARS--DS----DKICPLCDDRVQ 134 (389)
T ss_pred eecccCCcceeeecccccchhhhhhhhhc--Cc----cccCcCcccHHH
Confidence 57777555443 45679999999999654 22 479999977664
No 79
>KOG0826 consensus Predicted E3 ubiquitin ligase involved in peroxisome organization [Posttranslational modification, protein turnover, chaperones]
Probab=93.21 E-value=0.19 Score=52.24 Aligned_cols=48 Identities=19% Similarity=0.414 Sum_probs=39.3
Q ss_pred cCCCcccccccccccceeec-cCCcccHhHHHHHHhcCCCCCCCCcccccCCc
Q 007807 333 AYDDECAICREPMAKAKKLL-CNHLFHLACLRSWLDQGLNEMYSCPTCRKPLF 384 (589)
Q Consensus 333 ~~~~~C~IC~e~~~~~~~lp-C~H~Fh~~Cl~~Wl~~~~~~~~~CP~CR~~~~ 384 (589)
.....|++|+..-.+|..+. -|-+||..|+-+.+.+ ...||+--.+..
T Consensus 298 ~~~~~CpvClk~r~Nptvl~vSGyVfCY~Ci~~Yv~~----~~~CPVT~~p~~ 346 (357)
T KOG0826|consen 298 PDREVCPVCLKKRQNPTVLEVSGYVFCYPCIFSYVVN----YGHCPVTGYPAS 346 (357)
T ss_pred CccccChhHHhccCCCceEEecceEEeHHHHHHHHHh----cCCCCccCCcch
Confidence 34568999999988886664 6999999999999987 799998765543
No 80
>KOG1952 consensus Transcription factor NF-X1, contains NFX-type Zn2+-binding and R3H domains [Transcription]
Probab=93.20 E-value=0.048 Score=62.79 Aligned_cols=49 Identities=31% Similarity=0.855 Sum_probs=36.3
Q ss_pred cCCCcccccccccccce-ee---ccCCcccHhHHHHHHhcC---CCCCCCCccccc
Q 007807 333 AYDDECAICREPMAKAK-KL---LCNHLFHLACLRSWLDQG---LNEMYSCPTCRK 381 (589)
Q Consensus 333 ~~~~~C~IC~e~~~~~~-~l---pC~H~Fh~~Cl~~Wl~~~---~~~~~~CP~CR~ 381 (589)
....+|.||.|.+.... .+ .|-|+||..||++|..+. ....-.||.|+.
T Consensus 189 ~~~yeCmIC~e~I~~t~~~WSC~sCYhVFHl~CI~~WArs~ek~~~~~WrCP~Cqs 244 (950)
T KOG1952|consen 189 NRKYECMICTERIKRTAPVWSCKSCYHVFHLNCIKKWARSSEKTGQDGWRCPACQS 244 (950)
T ss_pred cCceEEEEeeeeccccCCceecchhhhhhhHHHHHHHHHHhhhccCccccCCcccc
Confidence 34568999999987532 22 577999999999998653 122468999984
No 81
>PF10272 Tmpp129: Putative transmembrane protein precursor; InterPro: IPR018801 This entry consists of proteins conserved from worms to humans. They are purported to be transmembrane protein-precursors but their function is unknown.
Probab=92.86 E-value=0.15 Score=54.44 Aligned_cols=34 Identities=26% Similarity=0.804 Sum_probs=24.9
Q ss_pred cCCcccHhHHHHHHhcCC---------CCCCCCcccccCCcCC
Q 007807 353 CNHLFHLACLRSWLDQGL---------NEMYSCPTCRKPLFVG 386 (589)
Q Consensus 353 C~H~Fh~~Cl~~Wl~~~~---------~~~~~CP~CR~~~~~~ 386 (589)
|....|.+|+-+|+..+. ....+||+||+.+...
T Consensus 311 CRPmWC~~Cm~kwFasrQd~~~~~~Wl~~~~~CPtCRa~FCil 353 (358)
T PF10272_consen 311 CRPMWCLECMGKWFASRQDQQHPETWLSGKCPCPTCRAKFCIL 353 (358)
T ss_pred ccchHHHHHHHHHhhhcCCCCChhhhhcCCCCCCCCcccceee
Confidence 446678899999985542 2257899999987643
No 82
>PF12906 RINGv: RING-variant domain; PDB: 2D8S_A 1VYX_A.
Probab=92.30 E-value=0.061 Score=40.48 Aligned_cols=40 Identities=28% Similarity=0.684 Sum_probs=26.3
Q ss_pred ccccccccccc--eeeccC-----CcccHhHHHHHHhcCCCCCCCCccc
Q 007807 338 CAICREPMAKA--KKLLCN-----HLFHLACLRSWLDQGLNEMYSCPTC 379 (589)
Q Consensus 338 C~IC~e~~~~~--~~lpC~-----H~Fh~~Cl~~Wl~~~~~~~~~CP~C 379 (589)
|-||++.-++. ...||+ ..-|..|+.+|+.... ...|++|
T Consensus 1 CrIC~~~~~~~~~li~pC~C~Gs~~~vH~~CL~~W~~~~~--~~~C~~C 47 (47)
T PF12906_consen 1 CRICLEGEEEDEPLISPCRCKGSMKYVHRSCLERWIRESG--NRKCEIC 47 (47)
T ss_dssp ETTTTEE-SSSS-EE-SSS-SSCCGSEECCHHHHHHHHHT---SB-TTT
T ss_pred CeEeCCcCCCCCceecccccCCCcchhHHHHHHHHHHhcC--CCcCCCC
Confidence 67888876543 355776 3679999999997531 4679887
No 83
>KOG4185 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=92.26 E-value=0.079 Score=55.26 Aligned_cols=45 Identities=31% Similarity=0.704 Sum_probs=38.5
Q ss_pred Cccccccccccc------ceeeccCCcccHhHHHHHHhcCCCCCCCCcccccCC
Q 007807 336 DECAICREPMAK------AKKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPL 383 (589)
Q Consensus 336 ~~C~IC~e~~~~------~~~lpC~H~Fh~~Cl~~Wl~~~~~~~~~CP~CR~~~ 383 (589)
..|-||-+++.. |+.+.|||.+|..|+..-+... ...||.||.+.
T Consensus 4 ~~c~~c~~~~s~~~~~~~p~~l~c~h~~c~~c~~~l~~~~---~i~cpfcR~~~ 54 (296)
T KOG4185|consen 4 PECEICNEDYSSEDGDHIPRVLKCGHTICQNCASKLLGNS---RILCPFCRETT 54 (296)
T ss_pred CceeecCccccccCcccCCcccccCceehHhHHHHHhcCc---eeeccCCCCcc
Confidence 479999999864 6778999999999998877765 67899999986
No 84
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=92.05 E-value=0.085 Score=54.83 Aligned_cols=50 Identities=26% Similarity=0.495 Sum_probs=34.8
Q ss_pred CCCccccccccccccee----eccCCcccHhHHHHHHhcCCCCCCCCcccccCCcCC
Q 007807 334 YDDECAICREPMAKAKK----LLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFVG 386 (589)
Q Consensus 334 ~~~~C~IC~e~~~~~~~----lpC~H~Fh~~Cl~~Wl~~~~~~~~~CP~CR~~~~~~ 386 (589)
+++.|+.|+|+++...+ -|||-..|.-|...--+. -+..||-||+...+.
T Consensus 13 eed~cplcie~mditdknf~pc~cgy~ic~fc~~~irq~---lngrcpacrr~y~de 66 (480)
T COG5175 13 EEDYCPLCIEPMDITDKNFFPCPCGYQICQFCYNNIRQN---LNGRCPACRRKYDDE 66 (480)
T ss_pred ccccCcccccccccccCCcccCCcccHHHHHHHHHHHhh---ccCCChHhhhhcccc
Confidence 45679999999987543 378877777775433222 257999999976543
No 85
>PHA03096 p28-like protein; Provisional
Probab=91.89 E-value=0.078 Score=55.06 Aligned_cols=46 Identities=26% Similarity=0.562 Sum_probs=32.2
Q ss_pred Ccccccccccccc-------eee-ccCCcccHhHHHHHHhcCCCCCCCCcccccC
Q 007807 336 DECAICREPMAKA-------KKL-LCNHLFHLACLRSWLDQGLNEMYSCPTCRKP 382 (589)
Q Consensus 336 ~~C~IC~e~~~~~-------~~l-pC~H~Fh~~Cl~~Wl~~~~~~~~~CP~CR~~ 382 (589)
..|.||+|..... -.+ .|.|.||..|++.|..... ....||.||..
T Consensus 179 k~c~ic~e~~~~k~~~~~~fgil~~c~h~fc~~ci~~wr~~~~-~~e~~~~c~~~ 232 (284)
T PHA03096 179 KICGICLENIKAKYIIKKYYGILSEIKHEFNIFCIKIWMTESL-YKETEPENRRL 232 (284)
T ss_pred hhcccchhhhhhhccccccccccccCCcHHHHHHHHHHHHhhh-hcccCccccch
Confidence 4799999986432 123 6999999999999986542 23556666543
No 86
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=91.88 E-value=0.061 Score=62.24 Aligned_cols=48 Identities=29% Similarity=0.565 Sum_probs=40.1
Q ss_pred CcccccccccccceeeccCCcccHhHHHHHHhcCCCCCCCCcccccCCcCC
Q 007807 336 DECAICREPMAKAKKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFVG 386 (589)
Q Consensus 336 ~~C~IC~e~~~~~~~lpC~H~Fh~~Cl~~Wl~~~~~~~~~CP~CR~~~~~~ 386 (589)
..|.+|.+ .+.+..++|+|.||.+|+..-++... ...||.||..+...
T Consensus 455 ~~c~ic~~-~~~~~it~c~h~~c~~c~~~~i~~~~--~~~~~~cr~~l~~~ 502 (674)
T KOG1001|consen 455 HWCHICCD-LDSFFITRCGHDFCVECLKKSIQQSE--NAPCPLCRNVLKEK 502 (674)
T ss_pred cccccccc-cccceeecccchHHHHHHHhcccccc--CCCCcHHHHHHHHH
Confidence 68999999 77788899999999999988776643 34799999887654
No 87
>PF07800 DUF1644: Protein of unknown function (DUF1644); InterPro: IPR012866 This family consists of sequences found in a number of hypothetical plant proteins of unknown function. The region of interest contains nine highly conserved cysteine residues and is approximately 160 amino acids in length, which probably represent a zinc-binding domain.
Probab=90.49 E-value=0.28 Score=46.15 Aligned_cols=52 Identities=31% Similarity=0.510 Sum_probs=36.7
Q ss_pred CCcccccccccccceeecc------------CC-cccHhHHHHHHhcCC---------------------------CCCC
Q 007807 335 DDECAICREPMAKAKKLLC------------NH-LFHLACLRSWLDQGL---------------------------NEMY 374 (589)
Q Consensus 335 ~~~C~IC~e~~~~~~~lpC------------~H-~Fh~~Cl~~Wl~~~~---------------------------~~~~ 374 (589)
+..|+||+|.-.+++.|-| +- .-|..||++..+... ....
T Consensus 2 d~~CpICme~PHNAVLLlCSS~~kgcRpymc~Ts~rhSNCLdqfkka~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L 81 (162)
T PF07800_consen 2 DVTCPICMEHPHNAVLLLCSSHEKGCRPYMCDTSYRHSNCLDQFKKAYGKSSSSSSQSSSSAPSDSSSSESSESQEQPEL 81 (162)
T ss_pred CccCceeccCCCceEEEEeccccCCccccccCCccchhHHHHHHHHHhcCCCCccccccccCcCCCcccccccccccccc
Confidence 4589999999988877744 32 247789998865420 0145
Q ss_pred CCcccccCCcCC
Q 007807 375 SCPTCRKPLFVG 386 (589)
Q Consensus 375 ~CP~CR~~~~~~ 386 (589)
.||+||..+...
T Consensus 82 ~CPLCRG~V~GW 93 (162)
T PF07800_consen 82 ACPLCRGEVKGW 93 (162)
T ss_pred cCccccCceece
Confidence 799999998654
No 88
>PF05883 Baculo_RING: Baculovirus U-box/Ring-like domain; InterPro: IPR008573 This family consists of several Baculovirus proteins of around 130 residues in length. The function of this family is unknown, but it appears to be related to the U-box and ring finger domain by profile-profile comparison.
Probab=90.46 E-value=0.098 Score=47.97 Aligned_cols=32 Identities=22% Similarity=0.551 Sum_probs=26.2
Q ss_pred Cccccccccccc--ce-eeccC------CcccHhHHHHHHh
Q 007807 336 DECAICREPMAK--AK-KLLCN------HLFHLACLRSWLD 367 (589)
Q Consensus 336 ~~C~IC~e~~~~--~~-~lpC~------H~Fh~~Cl~~Wl~ 367 (589)
-+|.||++...+ ++ -++|| |.||.+|+.+|-+
T Consensus 27 ~EC~IC~~~I~~~~GvV~vt~~g~lnLEkmfc~~C~~rw~~ 67 (134)
T PF05883_consen 27 VECQICFDRIDNNDGVVYVTDGGTLNLEKMFCADCDKRWRR 67 (134)
T ss_pred eeehhhhhhhhcCCCEEEEecCCeehHHHHHHHHHHHHHHh
Confidence 479999999987 43 45777 9999999999943
No 89
>PF02845 CUE: CUE domain; InterPro: IPR003892 This domain may be involved in binding ubiquitin-conjugating enzymes (UBCs). CUE domains also occur in two proteins of the IL-1 signal transduction pathway, tollip and TAB2.; GO: 0005515 protein binding; PDB: 2EKF_A 1OTR_A 1P3Q_Q 1MN3_A 1WGL_A 2EJS_A 2DAE_A 2DHY_A 2DI0_A.
Probab=90.27 E-value=0.43 Score=34.83 Aligned_cols=26 Identities=19% Similarity=0.330 Sum_probs=21.6
Q ss_pred HHHHHHHHHhcCCCchHHHHHHHhhh
Q 007807 549 LAMAETVREVLPHMPEDLIFQVCLDF 574 (589)
Q Consensus 549 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 574 (589)
.+++++++|++|+++++.|-++|...
T Consensus 2 ~~~v~~L~~mFP~~~~~~I~~~L~~~ 27 (42)
T PF02845_consen 2 EEMVQQLQEMFPDLDREVIEAVLQAN 27 (42)
T ss_dssp HHHHHHHHHHSSSS-HHHHHHHHHHT
T ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHc
Confidence 36899999999999999999888654
No 90
>smart00546 CUE Domain that may be involved in binding ubiquitin-conjugating enzymes (UBCs). CUE domains also occur in two protein of the IL-1 signal transduction pathway, tollip and TAB2. Ponting (Biochem. J.) "Proteins of the Endoplasmic reticulum" (in press)
Probab=89.55 E-value=0.45 Score=34.84 Aligned_cols=26 Identities=15% Similarity=0.268 Sum_probs=22.8
Q ss_pred HHHHHHHHHHhcCCCchHHHHHHHhh
Q 007807 548 ILAMAETVREVLPHMPEDLIFQVCLD 573 (589)
Q Consensus 548 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 573 (589)
...++++++|++|+++++.|-++|..
T Consensus 2 ~~~~v~~L~~mFP~l~~~~I~~~L~~ 27 (43)
T smart00546 2 NDEALHDLKDMFPNLDEEVIKAVLEA 27 (43)
T ss_pred hHHHHHHHHHHCCCCCHHHHHHHHHH
Confidence 45789999999999999999888764
No 91
>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=88.89 E-value=0.25 Score=56.10 Aligned_cols=57 Identities=39% Similarity=0.753 Sum_probs=47.6
Q ss_pred hCCCCChhhhhcCCCcccccccccccceeeccCCcccHhHHHHHHhcCCCCCCCCcccccCCcCC
Q 007807 322 ALPDATSEELRAYDDECAICREPMAKAKKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFVG 386 (589)
Q Consensus 322 ~~p~~~~~el~~~~~~C~IC~e~~~~~~~lpC~H~Fh~~Cl~~Wl~~~~~~~~~CP~CR~~~~~~ 386 (589)
..+.++.+++.+.++.|.+|++.+ ..+..+|. |..|+++|+.. +..||.|+.....+
T Consensus 466 ~~s~~~~~~l~~~~~~~~~~~~~~-~~~~~~~~---~~~~l~~~~~~----~~~~pl~~~~~~~~ 522 (543)
T KOG0802|consen 466 SLSEATPSQLREPNDVCAICYQEM-SARITPCS---HALCLRKWLYV----QEVCPLCHTYMKED 522 (543)
T ss_pred CCCCCChhhhhcccCcchHHHHHH-Hhcccccc---chhHHHhhhhh----ccccCCCchhhhcc
Confidence 455566777777889999999999 77778898 89999999987 58999999887654
No 92
>PF05290 Baculo_IE-1: Baculovirus immediate-early protein (IE-0); InterPro: IPR007954 This entry contains the Baculovirus immediate-early protein IE-0.
Probab=88.70 E-value=1.4 Score=40.42 Aligned_cols=49 Identities=29% Similarity=0.592 Sum_probs=37.5
Q ss_pred Ccccccccccccceee----ccCCcccHhHHHH-HHhcCCCCCCCCcccccCCcCC
Q 007807 336 DECAICREPMAKAKKL----LCNHLFHLACLRS-WLDQGLNEMYSCPTCRKPLFVG 386 (589)
Q Consensus 336 ~~C~IC~e~~~~~~~l----pC~H~Fh~~Cl~~-Wl~~~~~~~~~CP~CR~~~~~~ 386 (589)
-+|.||.|.-.+.+-| =||-..|..|-.. |.... ....||+|+.+....
T Consensus 81 YeCnIC~etS~ee~FLKPneCCgY~iCn~Cya~LWK~~~--~ypvCPvCkTSFKss 134 (140)
T PF05290_consen 81 YECNICKETSAEERFLKPNECCGYSICNACYANLWKFCN--LYPVCPVCKTSFKSS 134 (140)
T ss_pred eeccCcccccchhhcCCcccccchHHHHHHHHHHHHHcc--cCCCCCccccccccc
Confidence 3799999998887665 4999999998654 65433 268999999887643
No 93
>KOG3268 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=88.31 E-value=0.31 Score=46.43 Aligned_cols=51 Identities=29% Similarity=0.750 Sum_probs=35.3
Q ss_pred Cccccccccccc-------ceeeccCCcccHhHHHHHHhcCCC--C-----CCCCcccccCCcCC
Q 007807 336 DECAICREPMAK-------AKKLLCNHLFHLACLRSWLDQGLN--E-----MYSCPTCRKPLFVG 386 (589)
Q Consensus 336 ~~C~IC~e~~~~-------~~~lpC~H~Fh~~Cl~~Wl~~~~~--~-----~~~CP~CR~~~~~~ 386 (589)
..|.||...--+ +....||.-||.-|+..||+.-.. + -..||.|..++..+
T Consensus 166 ~~cgicyayqldGTipDqtCdN~qCgkpFHqiCL~dWLRgilTsRQSFdiiFGeCPYCS~PialK 230 (234)
T KOG3268|consen 166 GACGICYAYQLDGTIPDQTCDNIQCGKPFHQICLTDWLRGILTSRQSFDIIFGECPYCSDPIALK 230 (234)
T ss_pred hcccceeeeecCCccccccccccccCCcHHHHHHHHHHHHHhhccceeeeeeccCCCCCCcceee
Confidence 368888764322 234589999999999999965210 0 13699999887654
No 94
>KOG4739 consensus Uncharacterized protein involved in synaptonemal complex formation [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=87.78 E-value=0.14 Score=51.23 Aligned_cols=43 Identities=26% Similarity=0.598 Sum_probs=28.7
Q ss_pred cccccccccc-cc-eeeccCCcccHhHHHHHHhcCCCCCCCCcccccCCcC
Q 007807 337 ECAICREPMA-KA-KKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFV 385 (589)
Q Consensus 337 ~C~IC~e~~~-~~-~~lpC~H~Fh~~Cl~~Wl~~~~~~~~~CP~CR~~~~~ 385 (589)
.|..|...-. ++ ..+.|.|+||..|...- . ...||+||+++..
T Consensus 5 hCn~C~~~~~~~~f~LTaC~HvfC~~C~k~~--~----~~~C~lCkk~ir~ 49 (233)
T KOG4739|consen 5 HCNKCFRFPSQDPFFLTACRHVFCEPCLKAS--S----PDVCPLCKKSIRI 49 (233)
T ss_pred EeccccccCCCCceeeeechhhhhhhhcccC--C----ccccccccceeee
Confidence 3666655433 22 34589999999997431 1 2389999999654
No 95
>KOG1940 consensus Zn-finger protein [General function prediction only]
Probab=86.75 E-value=0.34 Score=49.90 Aligned_cols=43 Identities=35% Similarity=0.838 Sum_probs=36.0
Q ss_pred CCcccccccccc----cceeeccCCcccHhHHHHHHhcCCCCCCCCccccc
Q 007807 335 DDECAICREPMA----KAKKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRK 381 (589)
Q Consensus 335 ~~~C~IC~e~~~----~~~~lpC~H~Fh~~Cl~~Wl~~~~~~~~~CP~CR~ 381 (589)
+..|+||.|.+. .+..++|||.-|..|++..... +.+||+|.+
T Consensus 158 ~~ncPic~e~l~~s~~~~~~~~CgH~~h~~cf~e~~~~----~y~CP~C~~ 204 (276)
T KOG1940|consen 158 EFNCPICKEYLFLSFEDAGVLKCGHYMHSRCFEEMICE----GYTCPICSK 204 (276)
T ss_pred cCCCchhHHHhccccccCCccCcccchHHHHHHHHhcc----CCCCCcccc
Confidence 335999999864 4577899999999999988776 589999988
No 96
>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=86.43 E-value=0.092 Score=55.63 Aligned_cols=47 Identities=28% Similarity=0.673 Sum_probs=39.8
Q ss_pred Cccccccccccc----ceeeccCCcccHhHHHHHHhcCCCCCCCCcccccCCcCC
Q 007807 336 DECAICREPMAK----AKKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFVG 386 (589)
Q Consensus 336 ~~C~IC~e~~~~----~~~lpC~H~Fh~~Cl~~Wl~~~~~~~~~CP~CR~~~~~~ 386 (589)
..|+||.+.+.. ...+-|||.+|..||++|+.. ...||.||+.+...
T Consensus 197 ~sl~I~~~slK~~y~k~~~~~~g~~~~~~kL~k~L~~----~~kl~~~~rel~~~ 247 (465)
T KOG0827|consen 197 GSLSICFESLKQNYDKISAIVCGHIYHHGKLSKWLAT----KRKLPSCRRELPKN 247 (465)
T ss_pred hhhHhhHHHHHHHHHHHHHHhhcccchhhHHHHHHHH----HHHhHHHHhhhhhh
Confidence 479999988754 456789999999999999988 58899999998754
No 97
>PF04641 Rtf2: Rtf2 RING-finger
Probab=86.34 E-value=0.61 Score=47.95 Aligned_cols=48 Identities=19% Similarity=0.351 Sum_probs=37.1
Q ss_pred CCCcccccccccccc---e-eeccCCcccHhHHHHHHhcCCCCCCCCcccccCCcCC
Q 007807 334 YDDECAICREPMAKA---K-KLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFVG 386 (589)
Q Consensus 334 ~~~~C~IC~e~~~~~---~-~lpC~H~Fh~~Cl~~Wl~~~~~~~~~CP~CR~~~~~~ 386 (589)
..-.|||+..+|... + ..||||+|...|+.+-- . ...||+|-.++...
T Consensus 112 ~~~~CPvt~~~~~~~~~fv~l~~cG~V~s~~alke~k-~----~~~Cp~c~~~f~~~ 163 (260)
T PF04641_consen 112 GRFICPVTGKEFNGKHKFVYLRPCGCVFSEKALKELK-K----SKKCPVCGKPFTEE 163 (260)
T ss_pred ceeECCCCCcccCCceeEEEEcCCCCEeeHHHHHhhc-c----cccccccCCccccC
Confidence 345799999999543 2 23999999999998863 2 46899999988754
No 98
>KOG3053 consensus Uncharacterized conserved protein [Function unknown]
Probab=84.83 E-value=0.35 Score=48.75 Aligned_cols=51 Identities=25% Similarity=0.643 Sum_probs=37.1
Q ss_pred CCCccccccccccccee----eccC-----CcccHhHHHHHHhcCC----CCCCCCcccccCCc
Q 007807 334 YDDECAICREPMAKAKK----LLCN-----HLFHLACLRSWLDQGL----NEMYSCPTCRKPLF 384 (589)
Q Consensus 334 ~~~~C~IC~e~~~~~~~----lpC~-----H~Fh~~Cl~~Wl~~~~----~~~~~CP~CR~~~~ 384 (589)
.|..|=||++.=++... -||. |--|..|+..|++.+. .+.-.||.|+.+..
T Consensus 19 ~eR~CWiCF~TdeDn~~a~WV~PCrCRGt~KWVHqsCL~rWiDEK~~~n~~q~V~C~QCqTEYi 82 (293)
T KOG3053|consen 19 LERCCWICFATDEDNRLAAWVHPCRCRGTTKWVHQSCLSRWIDEKQRGNPLQTVSCPQCQTEYI 82 (293)
T ss_pred cceeEEEEeccCcccchhhhcccccccCccHHHHHHHHHHHHhHHhcCCCCceeechhhcchhe
Confidence 45679999987665432 2774 8889999999997642 23468999998753
No 99
>PF08746 zf-RING-like: RING-like domain; InterPro: IPR014857 This is a zinc finger domain that is related to the C3HC4 RING finger domain (IPR001841 from INTERPRO). ; PDB: 3NW0_A 2CT0_A.
Probab=84.14 E-value=0.75 Score=33.94 Aligned_cols=40 Identities=25% Similarity=0.747 Sum_probs=22.3
Q ss_pred ccccccccccceee---ccCCcccHhHHHHHHhcCCCCCCCCccc
Q 007807 338 CAICREPMAKAKKL---LCNHLFHLACLRSWLDQGLNEMYSCPTC 379 (589)
Q Consensus 338 C~IC~e~~~~~~~l---pC~H~Fh~~Cl~~Wl~~~~~~~~~CP~C 379 (589)
|.+|.+-...+.+= .|+=.+|..|+..++.... ...||.|
T Consensus 1 C~~C~~iv~~G~~C~~~~C~~r~H~~C~~~y~r~~~--~~~CP~C 43 (43)
T PF08746_consen 1 CEACKEIVTQGQRCSNRDCNVRLHDDCFKKYFRHRS--NPKCPNC 43 (43)
T ss_dssp -TTT-SB-SSSEE-SS--S--EE-HHHHHHHTTT-S--S-B-TTT
T ss_pred CcccchhHeeeccCCCCccCchHHHHHHHHHHhcCC--CCCCcCC
Confidence 66787776666544 4888999999999887642 2369988
No 100
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=83.93 E-value=0.37 Score=58.24 Aligned_cols=44 Identities=25% Similarity=0.511 Sum_probs=38.4
Q ss_pred Ccccccccccc-cceeeccCCcccHhHHHHHHhcCCCCCCCCcccccCC
Q 007807 336 DECAICREPMA-KAKKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPL 383 (589)
Q Consensus 336 ~~C~IC~e~~~-~~~~lpC~H~Fh~~Cl~~Wl~~~~~~~~~CP~CR~~~ 383 (589)
..|.||.+.+. ..-...|||.+|..|...|+.+ +..||+|+...
T Consensus 1154 ~~c~ic~dil~~~~~I~~cgh~~c~~c~~~~l~~----~s~~~~~ksi~ 1198 (1394)
T KOG0298|consen 1154 FVCEICLDILRNQGGIAGCGHEPCCRCDELWLYA----SSRCPICKSIK 1198 (1394)
T ss_pred cchHHHHHHHHhcCCeeeechhHhhhHHHHHHHH----hccCcchhhhh
Confidence 47999999998 5567799999999999999998 69999998543
No 101
>COG5183 SSM4 Protein involved in mRNA turnover and stability [RNA processing and modification]
Probab=83.03 E-value=0.72 Score=53.16 Aligned_cols=52 Identities=21% Similarity=0.471 Sum_probs=38.4
Q ss_pred CCCccccccccccc--ceeeccCC-----cccHhHHHHHHhcCCCCCCCCcccccCCcCCC
Q 007807 334 YDDECAICREPMAK--AKKLLCNH-----LFHLACLRSWLDQGLNEMYSCPTCRKPLFVGR 387 (589)
Q Consensus 334 ~~~~C~IC~e~~~~--~~~lpC~H-----~Fh~~Cl~~Wl~~~~~~~~~CP~CR~~~~~~~ 387 (589)
++..|-||+.+-.+ |.--||+. --|.+|+.+|+.-+. ...|-.|+.+..-++
T Consensus 11 d~~~CRICr~e~~~d~pLfhPCKC~GSIkYiH~eCL~eW~~~s~--~~kCdiChy~~~Fk~ 69 (1175)
T COG5183 11 DKRSCRICRTEDIRDDPLFHPCKCSGSIKYIHRECLMEWMECSG--TKKCDICHYEYKFKD 69 (1175)
T ss_pred cchhceeecCCCCCCCcCcccccccchhHHHHHHHHHHHHhcCC--Ccceeeecceeeeee
Confidence 44689999987543 33447773 479999999998642 578999999876543
No 102
>KOG4367 consensus Predicted Zn-finger protein [Function unknown]
Probab=82.86 E-value=0.58 Score=50.32 Aligned_cols=35 Identities=29% Similarity=0.496 Sum_probs=29.8
Q ss_pred CCCcccccccccccceeeccCCcccHhHHHHHHhc
Q 007807 334 YDDECAICREPMAKAKKLLCNHLFHLACLRSWLDQ 368 (589)
Q Consensus 334 ~~~~C~IC~e~~~~~~~lpC~H~Fh~~Cl~~Wl~~ 368 (589)
++..|+||-.-|++|+.+||+|..|..|-+.-+.+
T Consensus 3 eelkc~vc~~f~~epiil~c~h~lc~~ca~~~~~~ 37 (699)
T KOG4367|consen 3 EELKCPVCGSFYREPIILPCSHNLCQACARNILVQ 37 (699)
T ss_pred ccccCceehhhccCceEeecccHHHHHHHHhhccc
Confidence 34579999999999999999999999998765543
No 103
>KOG0801 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=81.98 E-value=0.47 Score=44.60 Aligned_cols=30 Identities=30% Similarity=0.662 Sum_probs=23.6
Q ss_pred hhhcCCCcccccccccccc---eeeccCCcccH
Q 007807 330 ELRAYDDECAICREPMAKA---KKLLCNHLFHL 359 (589)
Q Consensus 330 el~~~~~~C~IC~e~~~~~---~~lpC~H~Fh~ 359 (589)
.+.+...+|.||+|++... -+|||-.+||+
T Consensus 172 VL~ddkGECvICLEdL~~GdtIARLPCLCIYHK 204 (205)
T KOG0801|consen 172 VLKDDKGECVICLEDLEAGDTIARLPCLCIYHK 204 (205)
T ss_pred hhcccCCcEEEEhhhccCCCceeccceEEEeec
Confidence 3444567999999999865 46799999996
No 104
>KOG3161 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=81.77 E-value=0.6 Score=52.56 Aligned_cols=38 Identities=26% Similarity=0.646 Sum_probs=30.2
Q ss_pred cccccccccc----cceeeccCCcccHhHHHHHHhcCCCCCCCCccccc
Q 007807 337 ECAICREPMA----KAKKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRK 381 (589)
Q Consensus 337 ~C~IC~e~~~----~~~~lpC~H~Fh~~Cl~~Wl~~~~~~~~~CP~CR~ 381 (589)
.|.||+..|. .|+.+-|||..|..|+..-.. .+|| |+.
T Consensus 13 ~c~ic~n~f~~~~~~Pvsl~cghtic~~c~~~lyn------~scp-~~~ 54 (861)
T KOG3161|consen 13 LCDICLNLFVVQRLEPVSLQCGHTICGHCVQLLYN------ASCP-TKR 54 (861)
T ss_pred hchHHHHHHHHHhcCcccccccchHHHHHHHhHhh------ccCC-CCc
Confidence 6999988874 467889999999999976543 5899 544
No 105
>KOG3800 consensus Predicted E3 ubiquitin ligase containing RING finger, subunit of transcription/repair factor TFIIH and CDK-activating kinase assembly factor [Posttranslational modification, protein turnover, chaperones]
Probab=81.54 E-value=1 Score=46.41 Aligned_cols=45 Identities=27% Similarity=0.587 Sum_probs=34.0
Q ss_pred cccccccc-cccc-eee---ccCCcccHhHHHHHHhcCCCCCCCCcccccCCc
Q 007807 337 ECAICREP-MAKA-KKL---LCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLF 384 (589)
Q Consensus 337 ~C~IC~e~-~~~~-~~l---pC~H~Fh~~Cl~~Wl~~~~~~~~~CP~CR~~~~ 384 (589)
.|++|... +..| .++ +|+|.-|.+|.+.-+..+ ...||.|-..+.
T Consensus 2 ~Cp~CKt~~Y~np~lk~~in~C~H~lCEsCvd~iF~~g---~~~CpeC~~iLR 51 (300)
T KOG3800|consen 2 ACPKCKTDRYLNPDLKLMINECGHRLCESCVDRIFSLG---PAQCPECMVILR 51 (300)
T ss_pred CCcccccceecCccceeeeccccchHHHHHHHHHHhcC---CCCCCcccchhh
Confidence 59999765 3333 222 999999999999988876 689999966543
No 106
>KOG2817 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=81.13 E-value=3.9 Score=43.95 Aligned_cols=46 Identities=22% Similarity=0.531 Sum_probs=34.9
Q ss_pred Ccccccccccc---cceeeccCCcccHhHHHHHHhcCCCCCCCCcccccC
Q 007807 336 DECAICREPMA---KAKKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKP 382 (589)
Q Consensus 336 ~~C~IC~e~~~---~~~~lpC~H~Fh~~Cl~~Wl~~~~~~~~~CP~CR~~ 382 (589)
-.|||=.+.-. +|.++.|||+.+++-+.+--+.+. ....||.|=..
T Consensus 335 F~CPVlKeqtsdeNPPm~L~CGHVISkdAlnrLS~ng~-~sfKCPYCP~e 383 (394)
T KOG2817|consen 335 FICPVLKEQTSDENPPMMLICGHVISKDALNRLSKNGS-QSFKCPYCPVE 383 (394)
T ss_pred eecccchhhccCCCCCeeeeccceecHHHHHHHhhCCC-eeeeCCCCCcc
Confidence 46998777654 478999999999999988766642 13689999443
No 107
>KOG3002 consensus Zn finger protein [General function prediction only]
Probab=79.47 E-value=1.1 Score=47.00 Aligned_cols=42 Identities=31% Similarity=0.740 Sum_probs=32.9
Q ss_pred Ccccccccccccceeecc--CCcccHhHHHHHHhcCCCCCCCCcccccCCcC
Q 007807 336 DECAICREPMAKAKKLLC--NHLFHLACLRSWLDQGLNEMYSCPTCRKPLFV 385 (589)
Q Consensus 336 ~~C~IC~e~~~~~~~lpC--~H~Fh~~Cl~~Wl~~~~~~~~~CP~CR~~~~~ 385 (589)
.+||||.+.+..| ...| ||.-|..|=.+ . ...||.||.++..
T Consensus 49 leCPvC~~~l~~P-i~QC~nGHlaCssC~~~---~----~~~CP~Cr~~~g~ 92 (299)
T KOG3002|consen 49 LDCPVCFNPLSPP-IFQCDNGHLACSSCRTK---V----SNKCPTCRLPIGN 92 (299)
T ss_pred ccCchhhccCccc-ceecCCCcEehhhhhhh---h----cccCCcccccccc
Confidence 4799999999887 3455 58888888643 2 4789999999874
No 108
>KOG1100 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=79.02 E-value=0.87 Score=45.27 Aligned_cols=40 Identities=38% Similarity=0.708 Sum_probs=29.8
Q ss_pred cccccccccccceeeccCCc-ccHhHHHHHHhcCCCCCCCCcccccCCc
Q 007807 337 ECAICREPMAKAKKLLCNHL-FHLACLRSWLDQGLNEMYSCPTCRKPLF 384 (589)
Q Consensus 337 ~C~IC~e~~~~~~~lpC~H~-Fh~~Cl~~Wl~~~~~~~~~CP~CR~~~~ 384 (589)
.|-.|.+.-.....+||.|. +|..|-.. -..||+|+....
T Consensus 160 ~Cr~C~~~~~~VlllPCrHl~lC~~C~~~--------~~~CPiC~~~~~ 200 (207)
T KOG1100|consen 160 SCRKCGEREATVLLLPCRHLCLCGICDES--------LRICPICRSPKT 200 (207)
T ss_pred cceecCcCCceEEeecccceEeccccccc--------CccCCCCcChhh
Confidence 39999888777677899975 67778543 257999987654
No 109
>PF03854 zf-P11: P-11 zinc finger; InterPro: IPR003224 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The RING-finger is a specialised type of Zn-finger of 40 to 60 residues that binds two atoms of zinc, and is probably involved in mediating protein-protein interactions [, , ]. There are two different variants, the C3HC4-type and a C3H2C3-type, which is clearly related despite the different cysteine/histidine pattern. The latter type is sometimes referred to as 'RING-H2 finger'. The RING domain is a protein interaction domain which has been implicated in a range of diverse biological processes. Several 3D-structures for RING-fingers are known [, ]. The 3D structure of the zinc ligation system is unique to the RING domain and is referred to as the 'cross-brace' motif. The spacing of the cysteines in such a domain is: C-x(2)-C-x(9 to 39)-C-x(1 to 3)-H-x(2 to 3)-C-x(2)-C-x(4 to 48)-C-x(2)-C Metal ligand pairs one and three co-ordinate to bind one zinc ion, whilst pairs two and four bind the second. This entry represents RING finger protein Z, a small polypeptide found in some negative-strand RNA viruses including Lassa fever virus, which plays a crucial role in virion assembly and budding. RING finger Z has been shown to interact with several host proteins, including promyelocytic leukemia protein and the eukaryotic translation initiation factor 4E [, ]. It is sufficient in the absence of any other viral proteins to release virus-like particles from the infected cell []. This protein is also responsible for arenavirus superinfection exclusion; expression of this protein in a host cell strongly and specifically inhibits areanavirus transcription and replication []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003723 RNA binding, 0008270 zinc ion binding; PDB: 2KO5_A.
Probab=78.16 E-value=0.88 Score=34.16 Aligned_cols=44 Identities=32% Similarity=0.681 Sum_probs=25.3
Q ss_pred cccccccccccceeeccC-CcccHhHHHHHHhcCCCCCCCCcccccCCcCC
Q 007807 337 ECAICREPMAKAKKLLCN-HLFHLACLRSWLDQGLNEMYSCPTCRKPLFVG 386 (589)
Q Consensus 337 ~C~IC~e~~~~~~~lpC~-H~Fh~~Cl~~Wl~~~~~~~~~CP~CR~~~~~~ 386 (589)
.|--|+-. +.-.+.|. |-.|..|+...+.+ +..||+|..+++..
T Consensus 4 nCKsCWf~--~k~Li~C~dHYLCl~CLt~ml~~----s~~C~iC~~~LPtk 48 (50)
T PF03854_consen 4 NCKSCWFA--NKGLIKCSDHYLCLNCLTLMLSR----SDRCPICGKPLPTK 48 (50)
T ss_dssp ---SS-S----SSEEE-SS-EEEHHHHHHT-SS----SSEETTTTEE----
T ss_pred cChhhhhc--CCCeeeecchhHHHHHHHHHhcc----ccCCCcccCcCccc
Confidence 35566643 33345787 99999999999888 68999999988753
No 110
>KOG3899 consensus Uncharacterized conserved protein [Function unknown]
Probab=78.15 E-value=1.1 Score=46.14 Aligned_cols=35 Identities=29% Similarity=0.627 Sum_probs=26.0
Q ss_pred ccCCcccHhHHHHHHhcC---------CCCCCCCcccccCCcCC
Q 007807 352 LCNHLFHLACLRSWLDQG---------LNEMYSCPTCRKPLFVG 386 (589)
Q Consensus 352 pC~H~Fh~~Cl~~Wl~~~---------~~~~~~CP~CR~~~~~~ 386 (589)
-|....|.+|+.+|.... ..++.+||+||+.+...
T Consensus 324 ~crp~wc~~cla~~f~~rq~~v~r~~~~~~~~~cp~cr~~fci~ 367 (381)
T KOG3899|consen 324 ICRPLWCRSCLAQIFIGRQDNVYRYEYHRGSAQCPTCRKNFCIR 367 (381)
T ss_pred ccccHHHHHHHHHHHhhcccchhHHHHHhcCCCCcchhhceEEe
Confidence 366788899999997432 12367999999998754
No 111
>KOG4362 consensus Transcriptional regulator BRCA1 [Replication, recombination and repair; Transcription]
Probab=77.82 E-value=0.63 Score=53.35 Aligned_cols=49 Identities=27% Similarity=0.580 Sum_probs=38.8
Q ss_pred CCcccccccccccceeeccCCcccHhHHHHHHhcCCCCCCCCcccccCCc
Q 007807 335 DDECAICREPMAKAKKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLF 384 (589)
Q Consensus 335 ~~~C~IC~e~~~~~~~lpC~H~Fh~~Cl~~Wl~~~~~~~~~CP~CR~~~~ 384 (589)
..+|+||.+.+.++..+.|.|.|+..|+..-+..... ...||+|+..+.
T Consensus 21 ~lEc~ic~~~~~~p~~~kc~~~~l~~~~n~~f~~~~~-~~~~~lc~~~~e 69 (684)
T KOG4362|consen 21 ILECPICLEHVKEPSLLKCDHIFLKFCLNKLFESKKG-PKQCALCKSDIE 69 (684)
T ss_pred hccCCceeEEeeccchhhhhHHHHhhhhhceeeccCc-cccchhhhhhhh
Confidence 3479999999999999999999999998754443211 478999986654
No 112
>COG5220 TFB3 Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit TFB3 [Cell division and chromosome partitioning / Transcription / DNA replication, recombination, and repair]
Probab=76.15 E-value=1.4 Score=44.14 Aligned_cols=45 Identities=29% Similarity=0.690 Sum_probs=34.0
Q ss_pred CCCccccccccc-ccc-ee-e--c-cCCcccHhHHHHHHhcCCCCCCCCc--cccc
Q 007807 334 YDDECAICREPM-AKA-KK-L--L-CNHLFHLACLRSWLDQGLNEMYSCP--TCRK 381 (589)
Q Consensus 334 ~~~~C~IC~e~~-~~~-~~-l--p-C~H~Fh~~Cl~~Wl~~~~~~~~~CP--~CR~ 381 (589)
.|..||+|..+- -.| .+ + | |-|..|.+|+++-+..+ ...|| -|-+
T Consensus 9 ~d~~CPvCksDrYLnPdik~linPECyHrmCESCvdRIFs~G---pAqCP~~gC~k 61 (314)
T COG5220 9 EDRRCPVCKSDRYLNPDIKILINPECYHRMCESCVDRIFSRG---PAQCPYKGCGK 61 (314)
T ss_pred hcccCCccccccccCCCeEEEECHHHHHHHHHHHHHHHhcCC---CCCCCCccHHH
Confidence 456899998763 333 33 2 5 99999999999998886 67899 7744
No 113
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=67.56 E-value=2.9 Score=48.30 Aligned_cols=52 Identities=15% Similarity=0.089 Sum_probs=37.1
Q ss_pred CCCcccccccccccce----eec---cCCcccHhHHHHHHhcC--CCCCCCCcccccCCcC
Q 007807 334 YDDECAICREPMAKAK----KLL---CNHLFHLACLRSWLDQG--LNEMYSCPTCRKPLFV 385 (589)
Q Consensus 334 ~~~~C~IC~e~~~~~~----~lp---C~H~Fh~~Cl~~Wl~~~--~~~~~~CP~CR~~~~~ 385 (589)
..++|.+|.-++..++ ..| |+|.||..||..|.++- ......|+.|...+..
T Consensus 95 ~s~Ss~~C~~E~S~~~ds~~i~P~~~~~~~~CP~Ci~s~~DqL~~~~k~c~H~FC~~Ci~s 155 (1134)
T KOG0825|consen 95 ESDTSPVCEKEHSPDVDSSNICPVQTHVENQCPNCLKSCNDQLEESEKHTAHYFCEECVGS 155 (1134)
T ss_pred cccccchhheecCCcccccCcCchhhhhhhhhhHHHHHHHHHhhccccccccccHHHHhhh
Confidence 3467888888876632 334 99999999999998763 2234677888776643
No 114
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=65.83 E-value=3.6 Score=47.37 Aligned_cols=25 Identities=28% Similarity=0.717 Sum_probs=21.9
Q ss_pred eeccCCcccHhHHHHHHhcCCCCCCCCcc
Q 007807 350 KLLCNHLFHLACLRSWLDQGLNEMYSCPT 378 (589)
Q Consensus 350 ~lpC~H~Fh~~Cl~~Wl~~~~~~~~~CP~ 378 (589)
...|+|+-|..|.++|++. +..||.
T Consensus 1045 Cg~C~Hv~H~sc~~eWf~~----gd~Cps 1069 (1081)
T KOG0309|consen 1045 CGTCGHVGHTSCMMEWFRT----GDVCPS 1069 (1081)
T ss_pred hccccccccHHHHHHHHhc----CCcCCC
Confidence 3589999999999999998 478985
No 115
>KOG1609 consensus Protein involved in mRNA turnover and stability [RNA processing and modification]
Probab=63.49 E-value=3.3 Score=43.15 Aligned_cols=49 Identities=22% Similarity=0.552 Sum_probs=36.7
Q ss_pred CCccccccccccc----ceeeccC-----CcccHhHHHHHHhcCCCCCCCCcccccCCcC
Q 007807 335 DDECAICREPMAK----AKKLLCN-----HLFHLACLRSWLDQGLNEMYSCPTCRKPLFV 385 (589)
Q Consensus 335 ~~~C~IC~e~~~~----~~~lpC~-----H~Fh~~Cl~~Wl~~~~~~~~~CP~CR~~~~~ 385 (589)
+..|-||.++... +...||. +..|..|+..|.... ....|..|......
T Consensus 78 ~~~cRIc~~~~~~~~~~~l~~pC~C~g~l~~vH~~cl~~W~~~~--~~~~CeiC~~~~~~ 135 (323)
T KOG1609|consen 78 GPICRICHEEDEESNGLLLISPCSCKGSLAYVHRSCLEKWFSIK--GNITCEICKSFFIN 135 (323)
T ss_pred CCcEEEEecccccccccccccCccccCcHHHHHHHHHHhhhccc--cCeeeeccccccee
Confidence 4689999997754 3456776 667999999999732 15899999886554
No 116
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=62.05 E-value=5.1 Score=46.55 Aligned_cols=35 Identities=26% Similarity=0.588 Sum_probs=27.2
Q ss_pred CCCcccccccccc-------cceeeccCCcccHhHHHHHHhc
Q 007807 334 YDDECAICREPMA-------KAKKLLCNHLFHLACLRSWLDQ 368 (589)
Q Consensus 334 ~~~~C~IC~e~~~-------~~~~lpC~H~Fh~~Cl~~Wl~~ 368 (589)
.+..|.-|.+... ..+.+.|+|.||..|+..-..+
T Consensus 783 ~e~rc~~c~~~~l~~~~~~~~~~v~~c~h~yhk~c~~~~~~~ 824 (846)
T KOG2066|consen 783 VEERCSSCFEPNLPSGAAFDSVVVFHCGHMYHKECLMMESLR 824 (846)
T ss_pred ehhhhhhhcccccccCcccceeeEEEccchhhhcccccHHHh
Confidence 4558999998764 3367799999999999766555
No 117
>KOG4718 consensus Non-SMC (structural maintenance of chromosomes) element 1 protein (NSE1) [Chromatin structure and dynamics]
Probab=61.80 E-value=4.5 Score=39.92 Aligned_cols=44 Identities=23% Similarity=0.628 Sum_probs=34.9
Q ss_pred Ccccccccccccce-eeccCCcccHhHHHHHHhcCCCCCCCCcccccCC
Q 007807 336 DECAICREPMAKAK-KLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPL 383 (589)
Q Consensus 336 ~~C~IC~e~~~~~~-~lpC~H~Fh~~Cl~~Wl~~~~~~~~~CP~CR~~~ 383 (589)
..|.+|.+-.-..+ .-.|+-.+|..|+...+++ ...||.|-.-.
T Consensus 182 k~Cn~Ch~LvIqg~rCg~c~i~~h~~c~qty~q~----~~~cphc~d~w 226 (235)
T KOG4718|consen 182 KNCNLCHCLVIQGIRCGSCNIQYHRGCIQTYLQR----RDICPHCGDLW 226 (235)
T ss_pred HHHhHhHHHhheeeccCcccchhhhHHHHHHhcc----cCcCCchhccc
Confidence 47999988765444 3479999999999999998 68999995443
No 118
>PF02891 zf-MIZ: MIZ/SP-RING zinc finger; InterPro: IPR004181 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents MIZ-type zinc finger domains. Miz1 (Msx-interacting-zinc finger) is a zinc finger-containing protein with homology to the yeast protein, Nfi-1. Miz1 is a sequence specific DNA binding protein that can function as a positive-acting transcription factor. Miz1 binds to the homeobox protein Msx2, enhancing the specific DNA-binding ability of Msx2 []. Other proteins containing this domain include the human pias family (protein inhibitor of activated STAT protein). More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 3I2D_A.
Probab=59.93 E-value=7.2 Score=29.69 Aligned_cols=46 Identities=26% Similarity=0.597 Sum_probs=22.4
Q ss_pred Ccccccccccccceee-ccCCcccHhHHHHHHhcCC-CCCCCCcccccC
Q 007807 336 DECAICREPMAKAKKL-LCNHLFHLACLRSWLDQGL-NEMYSCPTCRKP 382 (589)
Q Consensus 336 ~~C~IC~e~~~~~~~l-pC~H~Fh~~Cl~~Wl~~~~-~~~~~CP~CR~~ 382 (589)
..|++....+..|.+- .|.|.-|.+ ++.|++... ...-.||+|.++
T Consensus 3 L~CPls~~~i~~P~Rg~~C~H~~CFD-l~~fl~~~~~~~~W~CPiC~~~ 50 (50)
T PF02891_consen 3 LRCPLSFQRIRIPVRGKNCKHLQCFD-LESFLESNQRTPKWKCPICNKP 50 (50)
T ss_dssp SB-TTTSSB-SSEEEETT--SS--EE-HHHHHHHHHHS---B-TTT---
T ss_pred eeCCCCCCEEEeCccCCcCcccceEC-HHHHHHHhhccCCeECcCCcCc
Confidence 3699999999988765 799974422 456665420 113579999763
No 119
>KOG3579 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=58.46 E-value=6.4 Score=40.48 Aligned_cols=34 Identities=26% Similarity=0.632 Sum_probs=29.2
Q ss_pred Ccccccccccccceeecc----CCcccHhHHHHHHhcC
Q 007807 336 DECAICREPMAKAKKLLC----NHLFHLACLRSWLDQG 369 (589)
Q Consensus 336 ~~C~IC~e~~~~~~~lpC----~H~Fh~~Cl~~Wl~~~ 369 (589)
..|.+|.|.+++...+.| .|.||..|-++-++++
T Consensus 269 LcCTLC~ERLEDTHFVQCPSVp~HKFCFPCSResIK~Q 306 (352)
T KOG3579|consen 269 LCCTLCHERLEDTHFVQCPSVPSHKFCFPCSRESIKQQ 306 (352)
T ss_pred eeehhhhhhhccCceeecCCCcccceecccCHHHHHhh
Confidence 479999999999887877 4999999999887664
No 120
>KOG1812 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=55.66 E-value=8.8 Score=41.81 Aligned_cols=34 Identities=29% Similarity=0.670 Sum_probs=25.3
Q ss_pred CCcccccccccccc----eeeccCCcccHhHHHHHHhc
Q 007807 335 DDECAICREPMAKA----KKLLCNHLFHLACLRSWLDQ 368 (589)
Q Consensus 335 ~~~C~IC~e~~~~~----~~lpC~H~Fh~~Cl~~Wl~~ 368 (589)
..+|.||..+.... ....|+|.||.+|..+.++.
T Consensus 146 ~~~C~iC~~e~~~~~~~f~~~~C~H~fC~~C~k~~iev 183 (384)
T KOG1812|consen 146 KEECGICFVEDPEAEDMFSVLKCGHRFCKDCVKQHIEV 183 (384)
T ss_pred cccCccCccccccHhhhHHHhcccchhhhHHhHHHhhh
Confidence 45899999443332 24579999999999988764
No 121
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=54.15 E-value=7.6 Score=39.24 Aligned_cols=32 Identities=16% Similarity=0.252 Sum_probs=29.3
Q ss_pred CcccccccccccceeeccCCcccHhHHHHHHh
Q 007807 336 DECAICREPMAKAKKLLCNHLFHLACLRSWLD 367 (589)
Q Consensus 336 ~~C~IC~e~~~~~~~lpC~H~Fh~~Cl~~Wl~ 367 (589)
+.|+.|+.+..+|+..|=||+|+++||-+.+-
T Consensus 44 dcCsLtLqPc~dPvit~~GylfdrEaILe~il 75 (303)
T KOG3039|consen 44 DCCSLTLQPCRDPVITPDGYLFDREAILEYIL 75 (303)
T ss_pred ceeeeecccccCCccCCCCeeeeHHHHHHHHH
Confidence 57999999999999999999999999988754
No 122
>smart00249 PHD PHD zinc finger. The plant homeodomain (PHD) finger is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in epigenetics and chromatin-mediated transcriptional regulation. The PHD finger binds two zinc ions using the so-called 'cross-brace' motif and is thus structurally related to the KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=53.66 E-value=9.9 Score=44.11 Aligned_cols=38 Identities=24% Similarity=0.577 Sum_probs=27.6
Q ss_pred cccccccccccceee--ccCCcccHhHHHHHHhcCCCCCCCCcc
Q 007807 337 ECAICREPMAKAKKL--LCNHLFHLACLRSWLDQGLNEMYSCPT 378 (589)
Q Consensus 337 ~C~IC~e~~~~~~~l--pC~H~Fh~~Cl~~Wl~~~~~~~~~CP~ 378 (589)
.|.+|.......... -|+|.=|.+|+++|+.. ...||.
T Consensus 781 ~CtVC~~vi~G~~~~c~~C~H~gH~sh~~sw~~~----~s~ca~ 820 (839)
T KOG0269|consen 781 KCTVCDLVIRGVDVWCQVCGHGGHDSHLKSWFFK----ASPCAK 820 (839)
T ss_pred CceeecceeeeeEeecccccccccHHHHHHHHhc----CCCCcc
Confidence 577776554433222 59999999999999988 466765
No 124
>PRK12495 hypothetical protein; Provisional
Probab=52.72 E-value=2.6e+02 Score=28.16 Aligned_cols=13 Identities=38% Similarity=0.894 Sum_probs=9.4
Q ss_pred CCCCcccccCCcC
Q 007807 373 MYSCPTCRKPLFV 385 (589)
Q Consensus 373 ~~~CP~CR~~~~~ 385 (589)
...||.|...+..
T Consensus 58 ~~~Cp~CQ~~~~~ 70 (226)
T PRK12495 58 QEFCPTCQQPVTE 70 (226)
T ss_pred eeECCCCCCcccc
Confidence 4679999876653
No 125
>PF07191 zinc-ribbons_6: zinc-ribbons; InterPro: IPR010807 This family consists of several short, hypothetical bacterial proteins of around 70 residues in length. Members of this family 8 highly conserved cysteine residues. The function of the family is unknown.; PDB: 2JRP_A 2JNE_A.
Probab=50.40 E-value=1.5 Score=35.81 Aligned_cols=40 Identities=25% Similarity=0.634 Sum_probs=22.3
Q ss_pred CcccccccccccceeeccCCcccHhHHHHHHhcCCCCCCCCcccccCCc
Q 007807 336 DECAICREPMAKAKKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLF 384 (589)
Q Consensus 336 ~~C~IC~e~~~~~~~lpC~H~Fh~~Cl~~Wl~~~~~~~~~CP~CR~~~~ 384 (589)
..||.|..+++..- +|..|..|-..... ...||.|..++.
T Consensus 2 ~~CP~C~~~L~~~~----~~~~C~~C~~~~~~-----~a~CPdC~~~Le 41 (70)
T PF07191_consen 2 NTCPKCQQELEWQG----GHYHCEACQKDYKK-----EAFCPDCGQPLE 41 (70)
T ss_dssp -B-SSS-SBEEEET----TEEEETTT--EEEE-----EEE-TTT-SB-E
T ss_pred CcCCCCCCccEEeC----CEEECcccccccee-----cccCCCcccHHH
Confidence 47999999876533 56666677655433 378999988875
No 126
>PF04216 FdhE: Protein involved in formate dehydrogenase formation; InterPro: IPR006452 This family of sequences describe an accessory protein required for the assembly of formate dehydrogenase of certain proteobacteria although not present in the final complex []. The exact nature of the function of FdhE in the assembly of the complex is unknown, but considering the presence of selenocysteine, molybdopterin, iron-sulphur clusters and cytochrome b556, it is likely to be involved in the insertion of cofactors. ; GO: 0005737 cytoplasm; PDB: 2FIY_B.
Probab=48.86 E-value=6.3 Score=41.11 Aligned_cols=45 Identities=20% Similarity=0.363 Sum_probs=20.9
Q ss_pred CCCcccccccccccceeec-----cCCcccHhHHHHHHhcCCCCCCCCcccccC
Q 007807 334 YDDECAICREPMAKAKKLL-----CNHLFHLACLRSWLDQGLNEMYSCPTCRKP 382 (589)
Q Consensus 334 ~~~~C~IC~e~~~~~~~lp-----C~H~Fh~~Cl~~Wl~~~~~~~~~CP~CR~~ 382 (589)
....||||-..-.-.+... -.|.+|.-|-.+|-.. ...||.|-..
T Consensus 171 ~~g~CPvCGs~P~~s~l~~~~~~G~R~L~Cs~C~t~W~~~----R~~Cp~Cg~~ 220 (290)
T PF04216_consen 171 QRGYCPVCGSPPVLSVLRGGEREGKRYLHCSLCGTEWRFV----RIKCPYCGNT 220 (290)
T ss_dssp T-SS-TTT---EEEEEEE------EEEEEETTT--EEE------TTS-TTT---
T ss_pred cCCcCCCCCCcCceEEEecCCCCccEEEEcCCCCCeeeec----CCCCcCCCCC
Confidence 3468999988754332221 2466777888889666 5899999543
No 127
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=47.02 E-value=15 Score=38.82 Aligned_cols=45 Identities=31% Similarity=0.606 Sum_probs=32.9
Q ss_pred Ccccccccccccce--e--eccCCcccHhHHHHHHhcCCCCCCCCcccccCCc
Q 007807 336 DECAICREPMAKAK--K--LLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLF 384 (589)
Q Consensus 336 ~~C~IC~e~~~~~~--~--lpC~H~Fh~~Cl~~Wl~~~~~~~~~CP~CR~~~~ 384 (589)
..|+||-++.+... . .||+|.-|..|+..-... +.+||.||++..
T Consensus 250 ~s~p~~~~~~~~~d~~~lP~~~~~~~~l~~~~t~~~~----~~~~~~~rk~~~ 298 (327)
T KOG2068|consen 250 PSCPICYEDLDLTDSNFLPCPCGFRLCLFCHKTISDG----DGRCPGCRKPYE 298 (327)
T ss_pred CCCCCCCCcccccccccccccccccchhhhhhccccc----CCCCCccCCccc
Confidence 68999999885432 2 368888778887665555 689999996554
No 128
>smart00132 LIM Zinc-binding domain present in Lin-11, Isl-1, Mec-3. Zinc-binding domain family. Some LIM domains bind protein partners via tyrosine-containing motifs. LIM domains are found in many key regulators of developmental pathways.
Probab=43.71 E-value=19 Score=24.54 Aligned_cols=35 Identities=34% Similarity=0.883 Sum_probs=24.9
Q ss_pred cccccccccccc-eee-ccCCcccHhHHHHHHhcCCCCCCCCcccccCC
Q 007807 337 ECAICREPMAKA-KKL-LCNHLFHLACLRSWLDQGLNEMYSCPTCRKPL 383 (589)
Q Consensus 337 ~C~IC~e~~~~~-~~l-pC~H~Fh~~Cl~~Wl~~~~~~~~~CP~CR~~~ 383 (589)
.|..|.+.+... ..+ .=+..||..| ..|..|+.++
T Consensus 1 ~C~~C~~~i~~~~~~~~~~~~~~H~~C------------f~C~~C~~~L 37 (39)
T smart00132 1 KCAGCGKPIRGGELVLRALGKVWHPEC------------FKCSKCGKPL 37 (39)
T ss_pred CccccCCcccCCcEEEEeCCccccccC------------CCCcccCCcC
Confidence 378888887664 333 3468899888 4788887765
No 129
>PF04710 Pellino: Pellino; InterPro: IPR006800 Pellino is involved in Toll-like signalling pathways, and associates with the kinase domain of the Pelle Ser/Thr kinase [, , ].; PDB: 3EGB_B 3EGA_A.
Probab=38.43 E-value=11 Score=40.78 Aligned_cols=31 Identities=26% Similarity=0.578 Sum_probs=0.0
Q ss_pred eeccCCcccHhHHHHHHhcCC--CCCCCCcccccCC
Q 007807 350 KLLCNHLFHLACLRSWLDQGL--NEMYSCPTCRKPL 383 (589)
Q Consensus 350 ~lpC~H~Fh~~Cl~~Wl~~~~--~~~~~CP~CR~~~ 383 (589)
-+.|||++-. ..|-.+.. ....+||+||..-
T Consensus 306 Yl~CGHVhG~---h~Wg~~~~~~~~~r~CPlCr~~g 338 (416)
T PF04710_consen 306 YLNCGHVHGY---HNWGQDSDRDPRSRTCPLCRQVG 338 (416)
T ss_dssp ------------------------------------
T ss_pred eccccceeee---cccccccccccccccCCCccccC
Confidence 4689998654 35754321 1257999999753
No 130
>KOG3113 consensus Uncharacterized conserved protein [Function unknown]
Probab=37.74 E-value=33 Score=34.95 Aligned_cols=46 Identities=15% Similarity=0.226 Sum_probs=34.9
Q ss_pred CCcccccccccccc----eeeccCCcccHhHHHHHHhcCCCCCCCCcccccCCcCC
Q 007807 335 DDECAICREPMAKA----KKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFVG 386 (589)
Q Consensus 335 ~~~C~IC~e~~~~~----~~lpC~H~Fh~~Cl~~Wl~~~~~~~~~CP~CR~~~~~~ 386 (589)
.-.|+|-.-+|... ...+|||+|-..-+.+-- ...|++|.+.....
T Consensus 111 ~fiCPvtgleMng~~~F~~l~~CGcV~SerAlKeik------as~C~~C~a~y~~~ 160 (293)
T KOG3113|consen 111 RFICPVTGLEMNGKYRFCALRCCGCVFSERALKEIK------ASVCHVCGAAYQED 160 (293)
T ss_pred eeecccccceecceEEEEEEeccceeccHHHHHHhh------hccccccCCccccc
Confidence 34699988777654 345999999988887744 36999999887654
No 131
>PF06844 DUF1244: Protein of unknown function (DUF1244); InterPro: IPR009654 This family consists of several short bacterial proteins of around 100 residues in length. The function of this family is unknown.; PDB: 2O35_A 3FYB_B.
Probab=36.79 E-value=20 Score=28.96 Aligned_cols=13 Identities=31% Similarity=0.764 Sum_probs=9.4
Q ss_pred cccHhHHHHHHhc
Q 007807 356 LFHLACLRSWLDQ 368 (589)
Q Consensus 356 ~Fh~~Cl~~Wl~~ 368 (589)
-||+.||..|...
T Consensus 11 gFCRNCLskWy~~ 23 (68)
T PF06844_consen 11 GFCRNCLSKWYRE 23 (68)
T ss_dssp S--HHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3999999999865
No 132
>KOG3842 consensus Adaptor protein Pellino [Signal transduction mechanisms]
Probab=36.74 E-value=27 Score=36.57 Aligned_cols=51 Identities=24% Similarity=0.464 Sum_probs=34.2
Q ss_pred CCCccccccccccc-----------------ce--eeccCCcccHhHHHHHHhcCCC-----CCCCCcccccCCc
Q 007807 334 YDDECAICREPMAK-----------------AK--KLLCNHLFHLACLRSWLDQGLN-----EMYSCPTCRKPLF 384 (589)
Q Consensus 334 ~~~~C~IC~e~~~~-----------------~~--~lpC~H~Fh~~Cl~~Wl~~~~~-----~~~~CP~CR~~~~ 384 (589)
.+.+|++|+..-.- +. .-||||+--..-..-|-+-..+ -+..||.|-..+.
T Consensus 340 ~~r~CPmC~~~gp~V~L~lG~E~~f~vD~G~pthaF~PCGHv~sekt~~YWs~iplPhGT~~f~a~CPFC~~~L~ 414 (429)
T KOG3842|consen 340 RERECPMCRVVGPYVPLWLGCEAGFYVDAGPPTHAFNPCGHVCSEKTVKYWSQIPLPHGTHAFHAACPFCATQLA 414 (429)
T ss_pred ccCcCCeeeeecceeeeeccccceeEecCCCcccccCCcccccchhhhhHhhcCcCCCccccccccCcchhhhhc
Confidence 35689999976320 11 2399998777777788765432 2468999977664
No 133
>PF13901 DUF4206: Domain of unknown function (DUF4206)
Probab=36.15 E-value=18 Score=35.74 Aligned_cols=39 Identities=31% Similarity=0.765 Sum_probs=26.5
Q ss_pred CCCcccccccc-----ccccee---eccCCcccHhHHHHHHhcCCCCCCCCccccc
Q 007807 334 YDDECAICREP-----MAKAKK---LLCNHLFHLACLRSWLDQGLNEMYSCPTCRK 381 (589)
Q Consensus 334 ~~~~C~IC~e~-----~~~~~~---lpC~H~Fh~~Cl~~Wl~~~~~~~~~CP~CR~ 381 (589)
.+..|-+|.++ |+.... -.|+-+||..|..+ ..||.|.+
T Consensus 151 kGfiCe~C~~~~~IfPF~~~~~~~C~~C~~v~H~~C~~~---------~~CpkC~R 197 (202)
T PF13901_consen 151 KGFICEICNSDDIIFPFQIDTTVRCPKCKSVFHKSCFRK---------KSCPKCAR 197 (202)
T ss_pred CCCCCccCCCCCCCCCCCCCCeeeCCcCccccchhhcCC---------CCCCCcHh
Confidence 34579999864 222112 27999999999742 47999954
No 134
>PF00412 LIM: LIM domain; InterPro: IPR001781 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents LIM-type zinc finger (Znf) domains. LIM domains coordinate one or more zinc atoms, and are named after the three proteins (LIN-11, Isl1 and MEC-3) in which they were first found. They consist of two zinc-binding motifs that resemble GATA-like Znf's, however the residues holding the zinc atom(s) are variable, involving Cys, His, Asp or Glu residues. LIM domains are involved in proteins with differing functions, including gene expression, and cytoskeleton organisation and development [, ]. Protein containing LIM Znf domains include: Caenorhabditis elegans mec-3; a protein required for the differentiation of the set of six touch receptor neurons in this nematode. C. elegans. lin-11; a protein required for the asymmetric division of vulval blast cells. Vertebrate insulin gene enhancer binding protein isl-1. Isl-1 binds to one of the two cis-acting protein-binding domains of the insulin gene. Vertebrate homeobox proteins lim-1, lim-2 (lim-5) and lim3. Vertebrate lmx-1, which acts as a transcriptional activator by binding to the FLAT element; a beta-cell-specific transcriptional enhancer found in the insulin gene. Mammalian LH-2, a transcriptional regulatory protein involved in the control of cell differentiation in developing lymphoid and neural cell types. Drosophila melanogaster (Fruit fly) protein apterous, required for the normal development of the wing and halter imaginal discs. Vertebrate protein kinases LIMK-1 and LIMK-2. Mammalian rhombotins. Rhombotin 1 (RBTN1 or TTG-1) and rhombotin-2 (RBTN2 or TTG-2) are proteins of about 160 amino acids whose genes are disrupted by chromosomal translocations in T-cell leukemia. Mammalian and avian cysteine-rich protein (CRP), a 192 amino-acid protein of unknown function. Seems to interact with zyxin. Mammalian cysteine-rich intestinal protein (CRIP), a small protein which seems to have a role in zinc absorption and may function as an intracellular zinc transport protein. Vertebrate paxillin, a cytoskeletal focal adhesion protein. Mus musculus (Mouse) testin which should not be confused with rat testin which is a thiol protease homologue (see IPR000169 from INTERPRO). Helianthus annuus (Common sunflower) pollen specific protein SF3. Chicken zyxin. Zyxin is a low-abundance adhesion plaque protein which has been shown to interact with CRP. Yeast protein LRG1 which is involved in sporulation []. Saccharomyces cerevisiae (Baker's yeast) rho-type GTPase activating protein RGA1/DBM1. C. elegans homeobox protein ceh-14. C. elegans homeobox protein unc-97. S. cerevisiae hypothetical protein YKR090w. C. elegans hypothetical proteins C28H8.6. These proteins generally contain two tandem copies of the LIM domain in their N-terminal section. Zyxin and paxillin are exceptions in that they contain respectively three and four LIM domains at their C-terminal extremity. In apterous, isl-1, LH-2, lin-11, lim-1 to lim-3, lmx-1 and ceh-14 and mec-3 there is a homeobox domain some 50 to 95 amino acids after the LIM domains. LIM domains contain seven conserved cysteine residues and a histidine. The arrangement followed by these conserved residues is: C-x(2)-C-x(16,23)-H-x(2)-[CH]-x(2)-C-x(2)-C-x(16,21)-C-x(2,3)-[CHD] LIM domains bind two zinc ions []. LIM does not bind DNA, rather it seems to act as an interface for protein-protein interaction. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 2CO8_A 2EGQ_A 2CUR_A 3IXE_B 1CTL_A 1B8T_A 1X62_A 2DFY_C 1IML_A 2CUQ_A ....
Probab=35.94 E-value=23 Score=26.88 Aligned_cols=37 Identities=32% Similarity=0.849 Sum_probs=28.5
Q ss_pred ccccccccccceee--ccCCcccHhHHHHHHhcCCCCCCCCcccccCCcCC
Q 007807 338 CAICREPMAKAKKL--LCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFVG 386 (589)
Q Consensus 338 C~IC~e~~~~~~~l--pC~H~Fh~~Cl~~Wl~~~~~~~~~CP~CR~~~~~~ 386 (589)
|..|.+.+...... .-+..||..| -.|-.|++++...
T Consensus 1 C~~C~~~I~~~~~~~~~~~~~~H~~C------------f~C~~C~~~l~~~ 39 (58)
T PF00412_consen 1 CARCGKPIYGTEIVIKAMGKFWHPEC------------FKCSKCGKPLNDG 39 (58)
T ss_dssp BTTTSSBESSSSEEEEETTEEEETTT------------SBETTTTCBTTTS
T ss_pred CCCCCCCccCcEEEEEeCCcEEEccc------------cccCCCCCccCCC
Confidence 77788887755433 6789999988 4899999888754
No 135
>KOG1829 consensus Uncharacterized conserved protein, contains C1, PH and RUN domains [Signal transduction mechanisms]
Probab=35.94 E-value=12 Score=42.65 Aligned_cols=24 Identities=38% Similarity=0.933 Sum_probs=18.4
Q ss_pred eccCCcccHhHHHHHHhcCCCCCCCCccccc
Q 007807 351 LLCNHLFHLACLRSWLDQGLNEMYSCPTCRK 381 (589)
Q Consensus 351 lpC~H~Fh~~Cl~~Wl~~~~~~~~~CP~CR~ 381 (589)
..|+++||..|++. . +..||.|-+
T Consensus 535 ~~C~avfH~~C~~r---~----s~~CPrC~R 558 (580)
T KOG1829|consen 535 STCLAVFHKKCLRR---K----SPCCPRCER 558 (580)
T ss_pred HHHHHHHHHHHHhc---c----CCCCCchHH
Confidence 48999999999754 2 355999944
No 136
>COG5109 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=35.33 E-value=23 Score=37.06 Aligned_cols=44 Identities=23% Similarity=0.495 Sum_probs=33.1
Q ss_pred Ccccccccccc---cceeeccCCcccHhHHHHHHhcCCCCCCCCcccc
Q 007807 336 DECAICREPMA---KAKKLLCNHLFHLACLRSWLDQGLNEMYSCPTCR 380 (589)
Q Consensus 336 ~~C~IC~e~~~---~~~~lpC~H~Fh~~Cl~~Wl~~~~~~~~~CP~CR 380 (589)
-.||+-.|.-. .|..+.|||+.-..-++.--+++.. ...||.|-
T Consensus 337 FiCPVlKe~~t~ENpP~ml~CgHVIskeal~~LS~nG~~-~FKCPYCP 383 (396)
T COG5109 337 FICPVLKELCTDENPPVMLECGHVISKEALSVLSQNGVL-SFKCPYCP 383 (396)
T ss_pred eeccccHhhhcccCCCeeeeccceeeHHHHHHHhhcCcE-EeeCCCCC
Confidence 36888666543 4688999999999999886665433 57899993
No 137
>PF10571 UPF0547: Uncharacterised protein family UPF0547; InterPro: IPR018886 This domain may well be a type of zinc-finger as it carries two pairs of highly conserved cysteine residues though with no accompanying histidines. Several members are annotated as putative helicases.
Probab=33.32 E-value=22 Score=23.41 Aligned_cols=21 Identities=24% Similarity=0.610 Sum_probs=11.5
Q ss_pred cccccccccccceee-c-cCCcc
Q 007807 337 ECAICREPMAKAKKL-L-CNHLF 357 (589)
Q Consensus 337 ~C~IC~e~~~~~~~l-p-C~H~F 357 (589)
.|+-|........+. | |||.|
T Consensus 2 ~CP~C~~~V~~~~~~Cp~CG~~F 24 (26)
T PF10571_consen 2 TCPECGAEVPESAKFCPHCGYDF 24 (26)
T ss_pred cCCCCcCCchhhcCcCCCCCCCC
Confidence 467776665443222 3 66666
No 138
>KOG3842 consensus Adaptor protein Pellino [Signal transduction mechanisms]
Probab=32.59 E-value=19 Score=37.74 Aligned_cols=47 Identities=23% Similarity=0.452 Sum_probs=28.9
Q ss_pred cCCCcccccccccccc--------------eeeccCCcccHhHHHHHHhcC--CCCCCCCcccccC
Q 007807 333 AYDDECAICREPMAKA--------------KKLLCNHLFHLACLRSWLDQG--LNEMYSCPTCRKP 382 (589)
Q Consensus 333 ~~~~~C~IC~e~~~~~--------------~~lpC~H~Fh~~Cl~~Wl~~~--~~~~~~CP~CR~~ 382 (589)
...+.|++=+..+.-| +-+.|||+--. ..|=.+. ..+...||+||..
T Consensus 288 A~RPQCPVglnTL~~P~~~~~~~~~~~QP~vYl~CGHV~G~---H~WG~~e~~g~~~r~CPmC~~~ 350 (429)
T KOG3842|consen 288 AARPQCPVGLNTLAFPSKRRKRVVDEKQPWVYLNCGHVHGY---HNWGVRENTGQRERECPMCRVV 350 (429)
T ss_pred ccCCCCCcccceeecccccccccccccCCeEEEeccccccc---cccccccccCcccCcCCeeeee
Confidence 3456788888776432 34699986322 2464332 2235789999875
No 139
>KOG1815 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=31.90 E-value=25 Score=39.08 Aligned_cols=36 Identities=31% Similarity=0.560 Sum_probs=30.5
Q ss_pred CCCccccccccccc-ceeeccCCcccHhHHHHHHhcC
Q 007807 334 YDDECAICREPMAK-AKKLLCNHLFHLACLRSWLDQG 369 (589)
Q Consensus 334 ~~~~C~IC~e~~~~-~~~lpC~H~Fh~~Cl~~Wl~~~ 369 (589)
.+.+|-||.+.... ...+.|+|.||..|....+.+.
T Consensus 69 ~~~~c~ic~~~~~~~~~~~~c~H~~c~~cw~~yl~~k 105 (444)
T KOG1815|consen 69 GDVQCGICVESYDGEIIGLGCGHPFCPPCWTGYLGTK 105 (444)
T ss_pred ccccCCcccCCCcchhhhcCCCcHHHHHHHHHHhhhe
Confidence 45689999999885 6677999999999999888764
No 140
>PF14446 Prok-RING_1: Prokaryotic RING finger family 1
Probab=31.44 E-value=43 Score=26.11 Aligned_cols=29 Identities=17% Similarity=0.532 Sum_probs=22.1
Q ss_pred CCCcccccccccc--cceee--ccCCcccHhHH
Q 007807 334 YDDECAICREPMA--KAKKL--LCNHLFHLACL 362 (589)
Q Consensus 334 ~~~~C~IC~e~~~--~~~~l--pC~H~Fh~~Cl 362 (589)
....|++|-+++. +.++. .||-.+|+.|-
T Consensus 4 ~~~~C~~Cg~~~~~~dDiVvCp~CgapyHR~C~ 36 (54)
T PF14446_consen 4 EGCKCPVCGKKFKDGDDIVVCPECGAPYHRDCW 36 (54)
T ss_pred cCccChhhCCcccCCCCEEECCCCCCcccHHHH
Confidence 3457999999994 33333 59999999994
No 141
>KOG0956 consensus PHD finger protein AF10 [General function prediction only]
Probab=30.90 E-value=1.3e+02 Score=34.96 Aligned_cols=51 Identities=24% Similarity=0.579 Sum_probs=33.7
Q ss_pred CCCcccccccccccc----------eeeccCCcccHhHHHHH--H-hcC---CCCCCCCcccccCCc
Q 007807 334 YDDECAICREPMAKA----------KKLLCNHLFHLACLRSW--L-DQG---LNEMYSCPTCRKPLF 384 (589)
Q Consensus 334 ~~~~C~IC~e~~~~~----------~~lpC~H~Fh~~Cl~~W--l-~~~---~~~~~~CP~CR~~~~ 384 (589)
.+.+|-||.|.-++- -+-.|...||-.|-..- | +.. .+..+.|-.|+..+.
T Consensus 116 fnKtCYIC~E~GrpnkA~~GACMtCNKs~CkqaFHVTCAQ~~GLLCEE~gn~~dNVKYCGYCk~Hfs 182 (900)
T KOG0956|consen 116 FNKTCYICNEEGRPNKAAKGACMTCNKSGCKQAFHVTCAQRAGLLCEEEGNISDNVKYCGYCKYHFS 182 (900)
T ss_pred hcceeeeecccCCccccccccceecccccchhhhhhhHhhhhccceeccccccccceechhHHHHHH
Confidence 456899999985432 23468889999997542 1 111 223689999987653
No 142
>PLN02189 cellulose synthase
Probab=29.30 E-value=52 Score=40.08 Aligned_cols=48 Identities=19% Similarity=0.454 Sum_probs=32.6
Q ss_pred CCCcccccccccccc----eee---ccCCcccHhHHHHHHhcCCCCCCCCcccccCCc
Q 007807 334 YDDECAICREPMAKA----KKL---LCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLF 384 (589)
Q Consensus 334 ~~~~C~IC~e~~~~~----~~l---pC~H~Fh~~Cl~~Wl~~~~~~~~~CP~CR~~~~ 384 (589)
....|.||-|+.... .-. .|+---|+.|.+-=-+.+ ++.||.|+....
T Consensus 33 ~~~~C~iCgd~vg~~~~g~~fvaC~~C~fpvCr~Cyeyer~eg---~q~CpqCkt~Y~ 87 (1040)
T PLN02189 33 DGQVCEICGDEIGLTVDGDLFVACNECGFPVCRPCYEYERREG---TQNCPQCKTRYK 87 (1040)
T ss_pred cCccccccccccCcCCCCCEEEeeccCCCccccchhhhhhhcC---CccCcccCCchh
Confidence 345899999987532 122 476668999984322232 789999988765
No 143
>PRK03564 formate dehydrogenase accessory protein FdhE; Provisional
Probab=28.42 E-value=36 Score=35.99 Aligned_cols=44 Identities=16% Similarity=0.379 Sum_probs=28.4
Q ss_pred CCCccccccccccccee-e--c--cCCcccHhHHHHHHhcCCCCCCCCccccc
Q 007807 334 YDDECAICREPMAKAKK-L--L--CNHLFHLACLRSWLDQGLNEMYSCPTCRK 381 (589)
Q Consensus 334 ~~~~C~IC~e~~~~~~~-l--p--C~H~Fh~~Cl~~Wl~~~~~~~~~CP~CR~ 381 (589)
....||+|-..-...+. . . =.|..|.-|-.+|--. ...||.|-.
T Consensus 186 ~~~~CPvCGs~P~~s~v~~~~~~G~RyL~CslC~teW~~~----R~~C~~Cg~ 234 (309)
T PRK03564 186 QRQFCPVCGSMPVSSVVQIGTTQGLRYLHCNLCESEWHVV----RVKCSNCEQ 234 (309)
T ss_pred CCCCCCCCCCcchhheeeccCCCCceEEEcCCCCCccccc----CccCCCCCC
Confidence 45789999877432211 1 1 1255566688888766 589999964
No 144
>TIGR02921 PEP_integral PEP-CTERM family integral membrane protein. Members of this protein family, found in three different species so far, have a PEP-CTERM sequence at the carboxyl-terminus (see model TIGR02595), but are unusual among PEP-CTERM proteins in having multiple predicted transmembrane segments. The function is unknown. It is proposed that a member of the EpsH family, to be designated exosortase (see TIGR02602), recognizes and cleaves PEP-CTERM proteins in a manner analogous to the cleavage of LPXTG proteins by sortase (see Haft, et al., 2006).
Probab=28.41 E-value=2.2e+02 Score=32.76 Aligned_cols=30 Identities=23% Similarity=0.429 Sum_probs=23.9
Q ss_pred HHcccCcHHHHHHHHHHHHHHHHHHhhhccc
Q 007807 82 IFFGELYPAETRKFVERLINYVIYKGTFLPL 112 (589)
Q Consensus 82 lfFG~LR~~E~e~L~er~~~~~~~k~~fl~~ 112 (589)
=||--|-.+|.||+-+ +|||++|...|+.+
T Consensus 169 gff~l~~~i~~~~~~~-i~nyil~~~a~i~g 198 (952)
T TIGR02921 169 GFFELLEEIEFEHLGD-IFNYILFHTAFICG 198 (952)
T ss_pred HHHHHHHHHHHHhHHH-HHHHHHHHHHHHHH
Confidence 4577788899999955 57999998777665
No 145
>PF10497 zf-4CXXC_R1: Zinc-finger domain of monoamine-oxidase A repressor R1; InterPro: IPR018866 R1 is a transcription factor repressor that inhibits monoamine oxidase A gene expression. This domain is a four-CXXC zinc finger putative DNA-binding domain found at the C-terminal end of R1. The domain carries 12 cysteines of which four pairs are of the CXXC type [].
Probab=27.07 E-value=59 Score=28.74 Aligned_cols=48 Identities=27% Similarity=0.606 Sum_probs=30.2
Q ss_pred CCcccccccccccce--------eecc---CCcccHhHHHHHHhcC-----CCCCCCCcccccC
Q 007807 335 DDECAICREPMAKAK--------KLLC---NHLFHLACLRSWLDQG-----LNEMYSCPTCRKP 382 (589)
Q Consensus 335 ~~~C~IC~e~~~~~~--------~lpC---~H~Fh~~Cl~~Wl~~~-----~~~~~~CP~CR~~ 382 (589)
...|-.|+..-.+.+ .-.| .=.||..||..+.... ....-.||.||.-
T Consensus 7 g~~CHqCrqKt~~~~~~C~~~~~~~~C~~~~~~fC~~CL~~ryge~~~ev~~~~~W~CP~Crgi 70 (105)
T PF10497_consen 7 GKTCHQCRQKTLDFKTICTGHWKNSSCRGCRGKFCGGCLRNRYGENVEEVLEDPNWKCPKCRGI 70 (105)
T ss_pred CCCchhhcCCCCCCceEcCCCCCCCCCccCcceehHhHHHHHHhhhHHHHhcCCceECCCCCCe
Confidence 446777766433221 2345 6679999998876542 1225679999873
No 146
>KOG0824 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=26.92 E-value=23 Score=37.02 Aligned_cols=47 Identities=28% Similarity=0.588 Sum_probs=39.6
Q ss_pred CCCcccccccccccceee-ccCCcccHhHHHHHHhcCCCCCCCCcccccCCc
Q 007807 334 YDDECAICREPMAKAKKL-LCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLF 384 (589)
Q Consensus 334 ~~~~C~IC~e~~~~~~~l-pC~H~Fh~~Cl~~Wl~~~~~~~~~CP~CR~~~~ 384 (589)
..+.|-+|...+..+.+. -|.|.|+..|...|... ...||.||....
T Consensus 104 ~~~~~~~~~g~l~vpt~~qg~w~qf~~~~p~~~~~~----~~~~~d~~~~~~ 151 (324)
T KOG0824|consen 104 DHDICYICYGKLTVPTRIQGCWHQFCYVCPKSNFAM----GNDCPDCRGKIS 151 (324)
T ss_pred CccceeeeeeeEEecccccCceeeeeecCCchhhhh----hhccchhhcCcC
Confidence 456899999998887665 49999999999999988 589999987654
No 147
>TIGR01562 FdhE formate dehydrogenase accessory protein FdhE. The only sequence scoring between trusted and noise is that from Aquifex aeolicus, which shows certain structural differences from the proteobacterial forms in the alignment. However it is notable that A. aeolicus also has a sequence scoring above trusted to the alpha subunit of formate dehydrogenase (TIGR01553).
Probab=26.56 E-value=33 Score=36.20 Aligned_cols=43 Identities=19% Similarity=0.389 Sum_probs=27.4
Q ss_pred CCcccccccccccceee----c--cCCcccHhHHHHHHhcCCCCCCCCccccc
Q 007807 335 DDECAICREPMAKAKKL----L--CNHLFHLACLRSWLDQGLNEMYSCPTCRK 381 (589)
Q Consensus 335 ~~~C~IC~e~~~~~~~l----p--C~H~Fh~~Cl~~Wl~~~~~~~~~CP~CR~ 381 (589)
...||||-..-...... . =.|..|.-|-.+|-.. ...||.|-.
T Consensus 184 ~~~CPvCGs~P~~s~~~~~~~~~G~RyL~CslC~teW~~~----R~~C~~Cg~ 232 (305)
T TIGR01562 184 RTLCPACGSPPVASMVRQGGKETGLRYLSCSLCATEWHYV----RVKCSHCEE 232 (305)
T ss_pred CCcCCCCCChhhhhhhcccCCCCCceEEEcCCCCCccccc----CccCCCCCC
Confidence 45899998764322111 1 1245566688888766 589999965
No 148
>KOG2807 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit SSL1 [Transcription; Replication, recombination and repair]
Probab=25.51 E-value=70 Score=33.85 Aligned_cols=54 Identities=20% Similarity=0.547 Sum_probs=33.9
Q ss_pred CCCCChhhhhc----CCCccccccccccccee---eccCCcccHhHHHHHHhcCCCCCCCCcccc
Q 007807 323 LPDATSEELRA----YDDECAICREPMAKAKK---LLCNHLFHLACLRSWLDQGLNEMYSCPTCR 380 (589)
Q Consensus 323 ~p~~~~~el~~----~~~~C~IC~e~~~~~~~---lpC~H~Fh~~Cl~~Wl~~~~~~~~~CP~CR 380 (589)
+|-..-+|.+. .+..|-.|.++....-. -.|+|.||.+|=. .+... -..||-|.
T Consensus 314 ~PL~~F~Eip~~~~~~~~~Cf~C~~~~~~~~~y~C~~Ck~~FCldCDv-~iHes---Lh~CpgCe 374 (378)
T KOG2807|consen 314 FPLKPFVEIPETEYNGSRFCFACQGELLSSGRYRCESCKNVFCLDCDV-FIHES---LHNCPGCE 374 (378)
T ss_pred cCCcchhhccccccCCCcceeeeccccCCCCcEEchhccceeeccchH-HHHhh---hhcCCCcC
Confidence 45444444432 23459999777655422 3799999999943 23222 36899996
No 149
>PLN02436 cellulose synthase A
Probab=25.22 E-value=68 Score=39.27 Aligned_cols=47 Identities=19% Similarity=0.487 Sum_probs=32.1
Q ss_pred CCcccccccccccc----eee---ccCCcccHhHHHHHHhcCCCCCCCCcccccCCc
Q 007807 335 DDECAICREPMAKA----KKL---LCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLF 384 (589)
Q Consensus 335 ~~~C~IC~e~~~~~----~~l---pC~H~Fh~~Cl~~Wl~~~~~~~~~CP~CR~~~~ 384 (589)
...|.||-|+.... .-. .|+---|+.|.+-=.+.+ ++.||.|+....
T Consensus 36 ~~iCqICGD~Vg~t~dGe~FVACn~C~fpvCr~Cyeyer~eg---~~~Cpqckt~Y~ 89 (1094)
T PLN02436 36 GQTCQICGDEIELTVDGEPFVACNECAFPVCRPCYEYERREG---NQACPQCKTRYK 89 (1094)
T ss_pred CccccccccccCcCCCCCEEEeeccCCCccccchhhhhhhcC---CccCcccCCchh
Confidence 45899999987432 122 466668999984322332 789999988764
No 150
>KOG4185 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=24.84 E-value=34 Score=35.53 Aligned_cols=45 Identities=24% Similarity=0.480 Sum_probs=35.4
Q ss_pred CCccccccccccc------ceeec--------cCCcccHhHHHHHHhcCCCCCCCCcccccC
Q 007807 335 DDECAICREPMAK------AKKLL--------CNHLFHLACLRSWLDQGLNEMYSCPTCRKP 382 (589)
Q Consensus 335 ~~~C~IC~e~~~~------~~~lp--------C~H~Fh~~Cl~~Wl~~~~~~~~~CP~CR~~ 382 (589)
+..|.||...+.. |..+. |+|.-|..|+..-+.+. ...||.||..
T Consensus 207 ~~~c~ic~~~~~~n~~~~~p~vl~~~~~~~~~c~htlc~~c~~~~l~~~---~~~cp~~~~~ 265 (296)
T KOG4185|consen 207 EKLCEICERIYSENDEKLAPLVLSLSRLKEKIEGHTLCKECIDTILLQA---GIKCPFCTWS 265 (296)
T ss_pred HHHHHHHHHHhhccccccchhHHHHHHHHHHHHHHHHHhcchHHHHHHh---hhcCCcccce
Confidence 4579999988762 34455 99999999999887764 3689999875
No 151
>KOG3005 consensus GIY-YIG type nuclease [General function prediction only]
Probab=24.47 E-value=36 Score=34.98 Aligned_cols=48 Identities=31% Similarity=0.609 Sum_probs=33.3
Q ss_pred Ccccccccccccc--ee-----eccCCcccHhHHHHHHhcC-----CCCCCCCcccccCC
Q 007807 336 DECAICREPMAKA--KK-----LLCNHLFHLACLRSWLDQG-----LNEMYSCPTCRKPL 383 (589)
Q Consensus 336 ~~C~IC~e~~~~~--~~-----lpC~H~Fh~~Cl~~Wl~~~-----~~~~~~CP~CR~~~ 383 (589)
..|-+|.+++.+. .. -.|+-++|..|+..-+... .+....||.|++.+
T Consensus 183 ~~celc~~ei~e~~~~~a~c~~~~c~~~~h~~CLa~~~~~~e~g~~~p~eg~cp~C~~~~ 242 (276)
T KOG3005|consen 183 VECELCEKEILETDWSRATCPNPDCDSLNHLTCLAEELLEVEPGQLIPLEGMCPKCEKFL 242 (276)
T ss_pred hhhHHHHHHhccccceeccCCCCCCCchhhhhhhhHHHhccCCCceeccCCCCCchhcee
Confidence 4799999988432 22 2588899999998743322 23357899998854
No 152
>PF02318 FYVE_2: FYVE-type zinc finger; InterPro: IPR003315 This entry represents the zinc-binding domain found in rabphilin Rab3A. The small G protein Rab3A plays an important role in the regulation of neurotransmitter release. The crystal structure of the small G protein Rab3A complexed with the effector domain of rabphilin-3A shows that the effector domain of rabphilin-3A contacts Rab3A in two distinct areas. The first interface involves the Rab3A switch I and switch II regions, which are sensitive to the nucleotide-binding state of Rab3A. The second interface consists of a deep pocket in Rab3A that interacts with a SGAWFF structural element of rabphilin-3A. Sequence and structure analysis, and biochemical data suggest that this pocket, or Rab complementarity-determining region (RabCDR), establishes a specific interaction between each Rab protein and its effectors. It has been suggested that RabCDRs could be major determinants of effector specificity during vesicle trafficking and fusion [].; GO: 0008270 zinc ion binding, 0017137 Rab GTPase binding, 0006886 intracellular protein transport; PDB: 2CSZ_A 2ZET_C 1ZBD_B 3BC1_B 2CJS_C 2A20_A.
Probab=23.85 E-value=86 Score=28.09 Aligned_cols=45 Identities=22% Similarity=0.517 Sum_probs=26.1
Q ss_pred CCCccccccccccc----c-eeeccCCcccHhHHHHHHhcCCCCCCCCccccc
Q 007807 334 YDDECAICREPMAK----A-KKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRK 381 (589)
Q Consensus 334 ~~~~C~IC~e~~~~----~-~~lpC~H~Fh~~Cl~~Wl~~~~~~~~~CP~CR~ 381 (589)
.+..|++|..+|.- + .-..|+|.+|..|-.. .. ....-.|-+|.+
T Consensus 53 ~~~~C~~C~~~fg~l~~~~~~C~~C~~~VC~~C~~~--~~-~~~~WlC~vC~k 102 (118)
T PF02318_consen 53 GERHCARCGKPFGFLFNRGRVCVDCKHRVCKKCGVY--SK-KEPIWLCKVCQK 102 (118)
T ss_dssp CCSB-TTTS-BCSCTSTTCEEETTTTEEEETTSEEE--TS-SSCCEEEHHHHH
T ss_pred CCcchhhhCCcccccCCCCCcCCcCCccccCccCCc--CC-CCCCEEChhhHH
Confidence 46689999988642 1 2337899999888533 11 111235777754
No 153
>KOG4218 consensus Nuclear hormone receptor betaFTZ-F1 [Transcription]
Probab=23.65 E-value=2.6e+02 Score=29.96 Aligned_cols=13 Identities=15% Similarity=0.774 Sum_probs=9.8
Q ss_pred CCCcccccccccc
Q 007807 334 YDDECAICREPMA 346 (589)
Q Consensus 334 ~~~~C~IC~e~~~ 346 (589)
.++.|++|-+...
T Consensus 14 l~ElCPVCGDkVS 26 (475)
T KOG4218|consen 14 LGELCPVCGDKVS 26 (475)
T ss_pred cccccccccCccc
Confidence 4567999988754
No 154
>PF01363 FYVE: FYVE zinc finger; InterPro: IPR000306 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The FYVE zinc finger is named after four proteins that it has been found in: Fab1, YOTB/ZK632.12, Vac1, and EEA1. The FYVE finger has been shown to bind two zinc ions []. The FYVE finger has eight potential zinc coordinating cysteine positions. Many members of this family also include two histidines in a motif R+HHC+XCG, where + represents a charged residue and X any residue. FYVE-type domains are divided into two known classes: FYVE domains that specifically bind to phosphatidylinositol 3-phosphate in lipid bilayers and FYVE-related domains of undetermined function []. Those that bind to phosphatidylinositol 3-phosphate are often found in proteins targeted to lipid membranes that are involved in regulating membrane traffic [, , ]. Most FYVE domains target proteins to endosomes by binding specifically to phosphatidylinositol-3-phosphate at the membrane surface. By contrast, the CARP2 FYVE-like domain is not optimized to bind to phosphoinositides or insert into lipid bilayers. FYVE domains are distinguished from other zinc fingers by three signature sequences: an N-terminal WxxD motif, a basic R(R/K)HHCR patch, and a C-terminal RVC motif. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0046872 metal ion binding; PDB: 1HYI_A 1JOC_B 1HYJ_A 1DVP_A 3ZYQ_A 4AVX_A 1VFY_A 3T7L_A 1X4U_A 1WFK_A ....
Probab=23.29 E-value=31 Score=27.46 Aligned_cols=30 Identities=17% Similarity=0.523 Sum_probs=15.7
Q ss_pred CCccccccccccccee----eccCCcccHhHHHH
Q 007807 335 DDECAICREPMAKAKK----LLCNHLFHLACLRS 364 (589)
Q Consensus 335 ~~~C~IC~e~~~~~~~----lpC~H~Fh~~Cl~~ 364 (589)
...|.+|...|.--.+ -.||++||..|...
T Consensus 9 ~~~C~~C~~~F~~~~rrhhCr~CG~~vC~~Cs~~ 42 (69)
T PF01363_consen 9 ASNCMICGKKFSLFRRRHHCRNCGRVVCSSCSSQ 42 (69)
T ss_dssp -SB-TTT--B-BSSS-EEE-TTT--EEECCCS-E
T ss_pred CCcCcCcCCcCCCceeeEccCCCCCEECCchhCC
Confidence 4589999999965322 27999999988744
No 155
>KOG2071 consensus mRNA cleavage and polyadenylation factor I/II complex, subunit Pcf11 [RNA processing and modification]
Probab=23.13 E-value=37 Score=38.62 Aligned_cols=30 Identities=33% Similarity=0.633 Sum_probs=23.3
Q ss_pred Cccccccccccc-------------ceeeccCCcccHhHHHHH
Q 007807 336 DECAICREPMAK-------------AKKLLCNHLFHLACLRSW 365 (589)
Q Consensus 336 ~~C~IC~e~~~~-------------~~~lpC~H~Fh~~Cl~~W 365 (589)
..|+||.|.|+. ++.+.=|-+||..|+..-
T Consensus 514 ~~C~IC~EkFe~v~d~e~~~Wm~kdaV~le~G~ifH~~Cl~e~ 556 (579)
T KOG2071|consen 514 ASCPICQEKFEVVFDQEEDLWMYKDAVYLEFGRIFHSKCLSEK 556 (579)
T ss_pred cCCcccccccceeecchhhheeecceeeeccCceeeccccchH
Confidence 469999999863 455567899999998653
No 156
>PF14569 zf-UDP: Zinc-binding RING-finger; PDB: 1WEO_A.
Probab=22.57 E-value=89 Score=26.19 Aligned_cols=48 Identities=19% Similarity=0.423 Sum_probs=19.8
Q ss_pred CCCcccccccccccc---e-e---eccCCcccHhHHHHHHhcCCCCCCCCcccccCCc
Q 007807 334 YDDECAICREPMAKA---K-K---LLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLF 384 (589)
Q Consensus 334 ~~~~C~IC~e~~~~~---~-~---lpC~H~Fh~~Cl~~Wl~~~~~~~~~CP~CR~~~~ 384 (589)
....|.||-+..... . - -.|+---|+.|.+-=.+.+ ++.||.|+....
T Consensus 8 ~~qiCqiCGD~VGl~~~Ge~FVAC~eC~fPvCr~CyEYErkeg---~q~CpqCkt~yk 62 (80)
T PF14569_consen 8 NGQICQICGDDVGLTENGEVFVACHECAFPVCRPCYEYERKEG---NQVCPQCKTRYK 62 (80)
T ss_dssp SS-B-SSS--B--B-SSSSB--S-SSS-----HHHHHHHHHTS----SB-TTT--B--
T ss_pred CCcccccccCccccCCCCCEEEEEcccCCccchhHHHHHhhcC---cccccccCCCcc
Confidence 345899999986421 1 1 2577778899986444443 689999986553
No 157
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=22.10 E-value=44 Score=38.87 Aligned_cols=44 Identities=23% Similarity=0.464 Sum_probs=28.0
Q ss_pred cCCCcccccccccccce----------e---eccCCcccHhHHHHHHhcCCCCCCCCcccccCCc
Q 007807 333 AYDDECAICREPMAKAK----------K---LLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLF 384 (589)
Q Consensus 333 ~~~~~C~IC~e~~~~~~----------~---lpC~H~Fh~~Cl~~Wl~~~~~~~~~CP~CR~~~~ 384 (589)
.++..|+-|...|..++ . ..|+|.-|..=|.. ...||.|...+.
T Consensus 1129 ~~~~~c~ec~~kfP~CiasG~pIt~~~fWlC~~CkH~a~~~EIs~--------y~~CPLCHs~~~ 1185 (1189)
T KOG2041|consen 1129 PYDLQCSECQTKFPVCIASGRPITDNIFWLCPRCKHRAHQHEISK--------YNCCPLCHSMES 1185 (1189)
T ss_pred ccCCCChhhcCcCceeeccCCccccceEEEccccccccccccccc--------cccCccccChhh
Confidence 34567887877775321 1 25788777655432 579999987653
No 158
>PF04710 Pellino: Pellino; InterPro: IPR006800 Pellino is involved in Toll-like signalling pathways, and associates with the kinase domain of the Pelle Ser/Thr kinase [, , ].; PDB: 3EGB_B 3EGA_A.
Probab=21.76 E-value=30 Score=37.45 Aligned_cols=50 Identities=24% Similarity=0.524 Sum_probs=0.0
Q ss_pred CCcccccccccc-----------------cc--eeeccCCcccHhHHHHHHhcCCCC-----CCCCcccccCCc
Q 007807 335 DDECAICREPMA-----------------KA--KKLLCNHLFHLACLRSWLDQGLNE-----MYSCPTCRKPLF 384 (589)
Q Consensus 335 ~~~C~IC~e~~~-----------------~~--~~lpC~H~Fh~~Cl~~Wl~~~~~~-----~~~CP~CR~~~~ 384 (589)
+.+|++|+..-. .| .--||||+--....+-|-+-..+. +..||-|-.++.
T Consensus 328 ~r~CPlCr~~g~~V~L~mG~E~afyvD~~~pthaF~PCGHv~SekTa~yWs~i~lPhGt~~f~a~CPFCa~~L~ 401 (416)
T PF04710_consen 328 SRTCPLCRQVGPYVPLWMGCEPAFYVDSGPPTHAFNPCGHVCSEKTAKYWSQIPLPHGTHAFHAACPFCATPLD 401 (416)
T ss_dssp --------------------------------------------------------------------------
T ss_pred cccCCCccccCCceeEeeccccceeecCCCCceeecccccccchhhhhhhhcCCCCCCcccccccCCcccCccc
Confidence 568999997532 01 123999998888888897654321 358999988775
No 159
>KOG1812 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=21.44 E-value=46 Score=36.29 Aligned_cols=42 Identities=21% Similarity=0.505 Sum_probs=29.1
Q ss_pred CCCcccccccccccc-----eeeccCCcccHhHHHHHHhcCCCCCCCCccc
Q 007807 334 YDDECAICREPMAKA-----KKLLCNHLFHLACLRSWLDQGLNEMYSCPTC 379 (589)
Q Consensus 334 ~~~~C~IC~e~~~~~-----~~lpC~H~Fh~~Cl~~Wl~~~~~~~~~CP~C 379 (589)
.-..|+.|.-..+.. .+-.|||-||..|...|... +..|..|
T Consensus 305 ~wr~CpkC~~~ie~~~GCnhm~CrC~~~fcy~C~~~~~~~----~~~~~~~ 351 (384)
T KOG1812|consen 305 RWRQCPKCKFMIELSEGCNHMTCRCGHQFCYMCGGDWKTH----NGECYEC 351 (384)
T ss_pred hcCcCcccceeeeecCCcceEEeeccccchhhcCcchhhC----CccccCc
Confidence 345799998765432 12259999999999999876 3556444
No 160
>PF00628 PHD: PHD-finger; InterPro: IPR019787 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the PHD (homeodomain) zinc finger domain [,], which is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in chromatin-mediated transcriptional regulation. The PHD finger motif is reminiscent of, but distinct from the C3HC4 type RING finger. The function of this domain is not yet known but in analogy with the LIM domain it could be involved in protein-protein interaction and be important for the assembly or activity of multicomponent complexes involved in transcriptional activation or repression. Alternatively, the interactions could be intra-molecular and be important in maintaining the structural integrity of the protein. In similarity to the RING finger and the LIM domain, the PHD finger is thought to bind two zinc ions. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0005515 protein binding; PDB: 3ZVY_A 2LGG_A 3SOW_A 3SOU_B 3ASL_A 3ASK_A 3ZVZ_B 3T6R_A 2LGK_A 3SOX_B ....
Probab=21.42 E-value=40 Score=25.01 Aligned_cols=45 Identities=22% Similarity=0.620 Sum_probs=28.2
Q ss_pred cccccccccccceee---ccCCcccHhHHHHHHhcC--CCCCCCCccccc
Q 007807 337 ECAICREPMAKAKKL---LCNHLFHLACLRSWLDQG--LNEMYSCPTCRK 381 (589)
Q Consensus 337 ~C~IC~e~~~~~~~l---pC~H~Fh~~Cl~~Wl~~~--~~~~~~CP~CR~ 381 (589)
.|.||...-.....+ .|+..||..|+..-.... ....-.||.|+.
T Consensus 1 ~C~vC~~~~~~~~~i~C~~C~~~~H~~C~~~~~~~~~~~~~~w~C~~C~~ 50 (51)
T PF00628_consen 1 YCPVCGQSDDDGDMIQCDSCNRWYHQECVGPPEKAEEIPSGDWYCPNCRP 50 (51)
T ss_dssp EBTTTTSSCTTSSEEEBSTTSCEEETTTSTSSHSHHSHHSSSBSSHHHHH
T ss_pred eCcCCCCcCCCCCeEEcCCCChhhCcccCCCChhhccCCCCcEECcCCcC
Confidence 388898854444444 688999999986433210 011467888863
No 161
>KOG1245 consensus Chromatin remodeling complex WSTF-ISWI, large subunit (contains heterochromatin localization, PHD and BROMO domains) [Chromatin structure and dynamics]
Probab=21.32 E-value=94 Score=39.59 Aligned_cols=50 Identities=36% Similarity=0.669 Sum_probs=39.4
Q ss_pred CCCcccccccccccceee---ccCCcccHhHHHHHHhcCCCCCCCCcccccCC
Q 007807 334 YDDECAICREPMAKAKKL---LCNHLFHLACLRSWLDQGLNEMYSCPTCRKPL 383 (589)
Q Consensus 334 ~~~~C~IC~e~~~~~~~l---pC~H~Fh~~Cl~~Wl~~~~~~~~~CP~CR~~~ 383 (589)
....|.+|+...++-..+ -|.-.||.-|++.-+.......-.||-||..-
T Consensus 1107 ~~~~c~~cr~k~~~~~m~lc~~c~~~~h~~C~rp~~~~~~~~dW~C~~c~~e~ 1159 (1404)
T KOG1245|consen 1107 VNALCKVCRRKKQDEKMLLCDECLSGFHLFCLRPALSSVPPGDWMCPSCRKEH 1159 (1404)
T ss_pred chhhhhhhhhcccchhhhhhHhhhhhHHHHhhhhhhccCCcCCccCCccchhh
Confidence 345799999988775555 46688999999998877655678999999865
No 162
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=20.48 E-value=4.1e+02 Score=31.44 Aligned_cols=105 Identities=17% Similarity=0.220 Sum_probs=0.0
Q ss_pred cccCc-HHHHHHHHHHHH--HHHHHHhhhccccccccchhhhHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCCCCcchhH
Q 007807 84 FGELY-PAETRKFVERLI--NYVIYKGTFLPLVIPPTVFQAGLWSVWLTVLCSLKMFQALARDRLERLNASPSATPWTYF 160 (589)
Q Consensus 84 FG~LR-~~E~e~L~er~~--~~~~~k~~fl~~vi~~~~~~~~~w~~wF~~L~fLK~fhwL~~dRve~L~~Sp~~~~~~h~ 160 (589)
+|+|| +.-..++.|.+. .|+..|+++ +|+.+++ .-.+..-||||| -+.|..+
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------~w~~~~~----~d~~~~~r~e~~-----~p~wl~~ 61 (697)
T PF09726_consen 7 CGKLRRPMKRNKITEGIYGSTFLYVKFLL----------------VWALVLL----ADFMLEFRFEYL-----WPFWLLL 61 (697)
T ss_pred chhhccchhhccccccccchHHHHHHHHH----------------HHHHHHH----HHHHhhhHHHHH-----HHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhCCCchhHHHHHHhHHHHHHHHHHHHHHHHH
Q 007807 161 RVFSALLFVLAVDIFWIRMCLLLFKTLDSSMFLLLFFEPLSVAFETMQAILVHGFQ 216 (589)
Q Consensus 161 Rl~~lL~~ll~~D~~~i~~~~~~~~~~g~s~~ll~~fE~~~l~~~tl~~ll~~~~~ 216 (589)
|-+.=-+=.--+-+..+..|+.++... +.++|+---.++++.+..+-+.|..+
T Consensus 62 ~~~~~~~~~~~~~~~~~~~~~~~~~d~---~~~~~~p~~~~~~~~~~~v~~~~~~~ 114 (697)
T PF09726_consen 62 RSVYDSFKYQGLAFSVFFVCIAFTSDL---ICLFFIPVHWLFFAASTYVWVQYVWH 114 (697)
T ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHhHHHHHHHhhh
Done!