Query 007807
Match_columns 589
No_of_seqs 480 out of 2310
Neff 6.8
Searched_HMMs 29240
Date Mon Mar 25 10:59:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007807.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/007807hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1iym_A EL5; ring-H2 finger, ub 99.2 6.5E-12 2.2E-16 96.1 3.3 47 334-384 4-54 (55)
2 2ect_A Ring finger protein 126 99.2 1.2E-11 4.1E-16 101.6 4.9 50 333-386 13-65 (78)
3 1x4j_A Ring finger protein 38; 99.2 6.2E-12 2.1E-16 102.6 3.2 49 333-385 21-72 (75)
4 2kiz_A E3 ubiquitin-protein li 99.2 1.5E-11 5E-16 98.6 4.8 50 333-386 12-64 (69)
5 2ecm_A Ring finger and CHY zin 99.2 1.6E-11 5.3E-16 93.8 4.0 47 334-384 4-54 (55)
6 2ecl_A Ring-box protein 2; RNF 99.2 1.3E-11 4.6E-16 102.5 3.7 49 334-386 14-77 (81)
7 3ng2_A RNF4, snurf, ring finge 99.2 1.4E-11 4.7E-16 99.1 3.6 49 334-386 9-64 (71)
8 2ea6_A Ring finger protein 4; 99.2 1.4E-11 4.8E-16 98.3 3.6 49 333-385 13-68 (69)
9 2djb_A Polycomb group ring fin 99.1 2.5E-11 8.6E-16 98.3 5.1 50 334-387 14-64 (72)
10 2l0b_A E3 ubiquitin-protein li 99.1 1.3E-11 4.6E-16 104.7 3.3 48 334-385 39-89 (91)
11 2ep4_A Ring finger protein 24; 99.1 2.4E-11 8.4E-16 98.7 4.4 50 333-386 13-65 (74)
12 1chc_A Equine herpes virus-1 r 99.1 2.9E-11 1E-15 96.5 4.5 48 334-385 4-52 (68)
13 2d8t_A Dactylidin, ring finger 99.1 9.5E-12 3.3E-16 100.5 1.6 49 334-386 14-62 (71)
14 4ayc_A E3 ubiquitin-protein li 99.1 3.3E-11 1.1E-15 110.2 5.0 49 334-386 52-100 (138)
15 2xeu_A Ring finger protein 4; 99.1 2.6E-11 8.8E-16 95.3 3.5 48 335-386 3-57 (64)
16 1v87_A Deltex protein 2; ring- 99.1 3.3E-11 1.1E-15 106.2 4.3 53 334-386 24-95 (114)
17 2ecy_A TNF receptor-associated 99.1 4.5E-11 1.5E-15 95.0 3.9 50 334-386 14-63 (66)
18 2yur_A Retinoblastoma-binding 99.1 7.8E-11 2.7E-15 96.0 4.9 50 334-385 14-64 (74)
19 2csy_A Zinc finger protein 183 99.1 6.6E-11 2.2E-15 98.0 3.9 47 334-384 14-60 (81)
20 2ysl_A Tripartite motif-contai 99.1 6.8E-11 2.3E-15 95.6 3.8 53 333-386 18-70 (73)
21 3dpl_R Ring-box protein 1; ubi 99.1 7.8E-11 2.7E-15 103.0 4.1 47 334-384 36-100 (106)
22 1t1h_A Gspef-atpub14, armadill 99.0 9.9E-11 3.4E-15 96.1 4.4 50 334-386 7-56 (78)
23 2ct2_A Tripartite motif protei 99.0 1.2E-10 4.2E-15 97.4 4.5 53 333-386 13-69 (88)
24 2ecn_A Ring finger protein 141 99.0 5E-11 1.7E-15 95.8 1.7 48 334-386 14-61 (70)
25 3fl2_A E3 ubiquitin-protein li 99.0 2.4E-10 8.2E-15 102.4 5.3 49 334-385 51-99 (124)
26 3lrq_A E3 ubiquitin-protein li 99.0 1.2E-10 4.1E-15 100.6 2.5 49 334-385 21-70 (100)
27 2ysj_A Tripartite motif-contai 99.0 2.8E-10 9.7E-15 89.4 4.3 46 333-379 18-63 (63)
28 1g25_A CDK-activating kinase a 99.0 3.7E-10 1.3E-14 89.4 4.2 49 335-386 3-56 (65)
29 3ztg_A E3 ubiquitin-protein li 99.0 3.1E-10 1E-14 96.1 4.0 50 333-384 11-61 (92)
30 2ecw_A Tripartite motif-contai 99.0 5.3E-10 1.8E-14 92.6 5.2 53 334-386 18-72 (85)
31 2ecv_A Tripartite motif-contai 98.9 5.6E-10 1.9E-14 92.5 5.2 54 333-386 17-72 (85)
32 2ckl_A Polycomb group ring fin 98.9 4.4E-10 1.5E-14 98.2 4.3 50 333-386 13-63 (108)
33 2y43_A E3 ubiquitin-protein li 98.9 2.7E-10 9.1E-15 98.0 2.8 48 334-385 21-69 (99)
34 2egp_A Tripartite motif-contai 98.9 2E-10 6.9E-15 94.2 1.4 53 334-386 11-66 (79)
35 2ecj_A Tripartite motif-contai 98.9 4.8E-10 1.6E-14 86.3 3.1 45 334-379 14-58 (58)
36 4a0k_B E3 ubiquitin-protein li 98.9 2.2E-10 7.5E-15 101.8 0.2 48 334-385 47-112 (117)
37 1z6u_A NP95-like ring finger p 98.9 7E-10 2.4E-14 103.0 3.3 50 334-386 77-126 (150)
38 1jm7_A BRCA1, breast cancer ty 98.9 1.4E-09 4.8E-14 95.2 4.6 51 335-386 21-71 (112)
39 3l11_A E3 ubiquitin-protein li 98.9 2.4E-10 8.1E-15 101.0 -0.4 48 335-385 15-62 (115)
40 4ap4_A E3 ubiquitin ligase RNF 98.8 1.3E-09 4.3E-14 97.9 4.2 50 334-387 6-62 (133)
41 2d8s_A Cellular modulator of i 98.8 1.9E-09 6.5E-14 89.4 4.2 52 333-386 13-71 (80)
42 2ckl_B Ubiquitin ligase protei 98.8 1.4E-09 4.9E-14 102.2 3.9 48 335-385 54-102 (165)
43 1rmd_A RAG1; V(D)J recombinati 98.8 1E-09 3.4E-14 97.1 2.6 50 334-386 22-71 (116)
44 2kr4_A Ubiquitin conjugation f 98.8 2E-09 6.9E-14 90.2 3.8 48 334-385 13-60 (85)
45 2c2l_A CHIP, carboxy terminus 98.8 6.3E-09 2.2E-13 105.1 7.6 49 334-385 207-255 (281)
46 3hct_A TNF receptor-associated 98.8 1.8E-09 6E-14 96.0 2.9 49 334-385 17-65 (118)
47 2kre_A Ubiquitin conjugation f 98.8 2.3E-09 7.7E-14 92.7 3.4 48 334-385 28-75 (100)
48 1e4u_A Transcriptional repress 98.8 5.4E-09 1.8E-13 86.2 5.2 50 334-386 10-63 (78)
49 1wgm_A Ubiquitin conjugation f 98.8 3.5E-09 1.2E-13 91.2 3.6 48 334-385 21-69 (98)
50 4ap4_A E3 ubiquitin ligase RNF 98.7 2.9E-09 9.8E-14 95.5 3.0 50 333-386 70-126 (133)
51 2ct0_A Non-SMC element 1 homol 98.7 6.8E-09 2.3E-13 84.6 4.6 52 333-386 13-65 (74)
52 1bor_A Transcription factor PM 98.7 2.4E-09 8.1E-14 82.5 1.6 46 334-386 5-50 (56)
53 2vje_A E3 ubiquitin-protein li 98.7 5.9E-09 2E-13 82.6 3.6 47 334-384 7-56 (64)
54 2y1n_A E3 ubiquitin-protein li 98.7 6E-09 2.1E-13 110.1 4.7 49 335-386 332-380 (389)
55 2vje_B MDM4 protein; proto-onc 98.7 6.1E-09 2.1E-13 82.2 3.4 48 333-384 5-55 (63)
56 3knv_A TNF receptor-associated 98.7 2.6E-09 8.9E-14 98.1 1.0 50 333-385 29-78 (141)
57 1jm7_B BARD1, BRCA1-associated 98.6 8E-09 2.7E-13 91.6 1.4 46 334-385 21-67 (117)
58 2f42_A STIP1 homology and U-bo 98.6 2.2E-08 7.5E-13 95.3 3.8 48 335-385 106-153 (179)
59 4ic3_A E3 ubiquitin-protein li 98.5 1.3E-08 4.5E-13 82.9 1.1 44 334-385 23-67 (74)
60 2yu4_A E3 SUMO-protein ligase 98.5 2.7E-08 9.3E-13 84.8 2.9 50 335-384 7-62 (94)
61 3hcs_A TNF receptor-associated 98.5 4.2E-08 1.4E-12 92.5 2.8 50 334-386 17-66 (170)
62 2ea5_A Cell growth regulator w 98.4 1.3E-07 4.5E-12 75.7 3.9 45 333-385 13-58 (68)
63 2ecg_A Baculoviral IAP repeat- 98.4 1E-07 3.6E-12 77.6 3.4 43 335-385 25-68 (75)
64 2ekf_A Ancient ubiquitous prot 98.3 2.8E-07 9.4E-12 71.4 3.4 36 537-572 2-37 (61)
65 2ejs_A Autocrine motility fact 98.3 3.7E-07 1.3E-11 70.1 3.7 36 537-572 2-37 (58)
66 3k1l_B Fancl; UBC, ring, RWD, 98.2 3.2E-07 1.1E-11 94.4 2.9 52 334-385 307-373 (381)
67 2yho_A E3 ubiquitin-protein li 98.2 2.4E-07 8.2E-12 76.4 1.3 43 335-385 18-61 (79)
68 2bay_A PRE-mRNA splicing facto 98.2 4.7E-07 1.6E-11 71.0 2.8 47 336-386 4-51 (61)
69 3htk_C E3 SUMO-protein ligase 98.2 7.4E-07 2.5E-11 89.0 4.2 50 335-386 181-233 (267)
70 1vyx_A ORF K3, K3RING; zinc-bi 98.1 1E-06 3.5E-11 68.8 3.3 49 334-384 5-58 (60)
71 3t6p_A Baculoviral IAP repeat- 98.1 7.2E-07 2.5E-11 93.4 1.2 44 334-385 294-338 (345)
72 1wim_A KIAA0161 protein; ring 98.0 2.9E-06 1E-10 71.9 3.2 48 335-382 5-61 (94)
73 3vk6_A E3 ubiquitin-protein li 97.7 1.9E-05 6.4E-10 67.1 3.7 46 337-385 3-49 (101)
74 4g3o_A E3 ubiquitin-protein li 97.5 6.6E-05 2.3E-09 57.3 3.8 29 545-573 14-42 (58)
75 3nw0_A Non-structural maintena 97.2 0.00018 6.2E-09 71.4 4.5 51 335-387 180-231 (238)
76 2jun_A Midline-1; B-BOX, TRIM, 91.6 0.063 2.1E-06 45.3 1.7 31 335-365 3-36 (101)
77 1wil_A KIAA1045 protein; ring 91.0 0.12 4.1E-06 42.3 2.7 32 333-365 13-47 (89)
78 2lri_C Autoimmune regulator; Z 90.1 0.14 4.8E-06 40.3 2.4 51 333-383 10-60 (66)
79 2ko5_A Ring finger protein Z; 88.2 0.23 8E-06 41.5 2.4 45 336-386 29-74 (99)
80 3m62_A Ubiquitin conjugation f 86.0 1.4 4.7E-05 51.5 8.0 47 335-385 891-938 (968)
81 2cs3_A Protein C14ORF4, MY039 79.6 1.2 3.9E-05 36.1 2.8 45 335-379 15-64 (93)
82 1mm2_A MI2-beta; PHD, zinc fin 79.3 0.43 1.5E-05 36.7 0.3 51 333-383 7-57 (61)
83 2l5u_A Chromodomain-helicase-D 78.7 0.62 2.1E-05 35.8 1.0 47 333-382 9-58 (61)
84 3u5n_A E3 ubiquitin-protein li 78.2 0.4 1.4E-05 46.1 -0.3 51 333-383 5-55 (207)
85 2k16_A Transcription initiatio 77.6 0.31 1.1E-05 38.9 -1.0 51 334-384 17-70 (75)
86 1f62_A Transcription factor WS 77.4 0.84 2.9E-05 33.5 1.4 45 337-381 2-49 (51)
87 3o36_A Transcription intermedi 77.1 0.5 1.7E-05 44.5 0.1 50 334-383 3-52 (184)
88 2di0_A Activating signal coint 75.6 3.1 0.00011 33.0 4.3 33 542-574 7-39 (71)
89 1fp0_A KAP-1 corepressor; PHD 72.3 1.3 4.5E-05 36.7 1.4 50 333-382 23-72 (88)
90 2ro1_A Transcription intermedi 71.3 0.97 3.3E-05 42.8 0.5 48 335-382 2-49 (189)
91 2yql_A PHD finger protein 21A; 70.0 0.46 1.6E-05 35.8 -1.7 49 333-381 7-55 (56)
92 1xwh_A Autoimmune regulator; P 66.4 0.94 3.2E-05 35.3 -0.6 49 334-382 7-55 (66)
93 2puy_A PHD finger protein 21A; 64.8 0.81 2.8E-05 34.9 -1.3 50 334-383 4-53 (60)
94 2ysm_A Myeloid/lymphoid or mix 63.4 1.6 5.4E-05 37.5 0.1 47 334-380 6-55 (111)
95 2g45_A Ubiquitin carboxyl-term 59.8 0.53 1.8E-05 42.0 -3.6 84 360-451 2-105 (129)
96 1wev_A Riken cDNA 1110020M19; 59.3 1.3 4.3E-05 36.7 -1.2 52 334-385 15-75 (88)
97 2e6r_A Jumonji/ARID domain-con 59.0 1 3.5E-05 37.6 -1.8 49 334-382 15-66 (92)
98 2lbm_A Transcriptional regulat 59.0 5.9 0.0002 35.7 3.1 49 333-381 61-116 (142)
99 1wen_A Inhibitor of growth fam 58.5 5.7 0.0002 31.4 2.6 46 334-383 15-66 (71)
100 3ihp_A Ubiquitin carboxyl-term 57.1 0.57 2E-05 54.5 -5.0 93 351-451 174-286 (854)
101 2dhy_A CUE domain-containing p 56.2 13 0.00043 29.2 4.2 27 546-572 16-42 (67)
102 1we9_A PHD finger family prote 55.0 1.4 4.6E-05 34.0 -1.6 49 334-382 5-58 (64)
103 3v43_A Histone acetyltransfera 53.9 2.8 9.7E-05 36.0 0.1 45 337-381 63-111 (112)
104 1weu_A Inhibitor of growth fam 52.6 6.7 0.00023 32.6 2.2 44 336-383 37-86 (91)
105 3lqh_A Histone-lysine N-methyl 52.4 4.2 0.00014 38.3 1.0 50 335-384 2-65 (183)
106 2yt5_A Metal-response element- 52.1 1.5 5.2E-05 33.8 -1.7 52 333-384 4-63 (66)
107 3shb_A E3 ubiquitin-protein li 50.5 2.7 9.3E-05 33.9 -0.5 45 337-381 28-76 (77)
108 3ask_A E3 ubiquitin-protein li 50.3 3.6 0.00012 40.1 0.2 45 337-381 176-224 (226)
109 3asl_A E3 ubiquitin-protein li 50.0 3.8 0.00013 32.3 0.3 45 337-381 20-68 (70)
110 2e6s_A E3 ubiquitin-protein li 49.8 3.7 0.00013 33.0 0.2 46 336-381 27-76 (77)
111 1joc_A EEA1, early endosomal a 48.1 18 0.00063 31.6 4.5 27 336-362 70-100 (125)
112 1zbd_B Rabphilin-3A; G protein 47.5 9.9 0.00034 33.9 2.6 30 333-362 53-87 (134)
113 2i50_A Ubiquitin carboxyl-term 46.8 0.94 3.2E-05 40.2 -4.2 92 350-452 4-107 (126)
114 2vnf_A ING 4, P29ING4, inhibit 44.6 4.4 0.00015 30.9 -0.1 43 335-381 10-58 (60)
115 1weo_A Cellulose synthase, cat 44.5 25 0.00087 29.0 4.3 48 334-384 15-69 (93)
116 3ql9_A Transcriptional regulat 44.3 14 0.00048 32.7 3.1 50 333-382 55-111 (129)
117 3c6w_A P28ING5, inhibitor of g 42.1 5.1 0.00018 30.4 -0.1 43 335-381 9-57 (59)
118 3i2d_A E3 SUMO-protein ligase 40.1 23 0.00079 36.9 4.4 51 335-386 249-301 (371)
119 4gne_A Histone-lysine N-methyl 39.7 13 0.00044 31.8 2.0 49 333-386 13-66 (107)
120 2dar_A PDZ and LIM domain prot 39.0 17 0.00058 29.3 2.7 40 334-385 24-63 (90)
121 2jmi_A Protein YNG1, ING1 homo 38.4 7.5 0.00026 32.3 0.3 44 334-381 25-75 (90)
122 1x62_A C-terminal LIM domain p 38.2 16 0.00055 28.7 2.3 38 335-384 15-52 (79)
123 2d8z_A Four and A half LIM dom 37.3 21 0.00072 27.1 2.8 39 335-385 5-43 (70)
124 2d8x_A Protein pinch; LIM doma 36.8 21 0.00073 27.1 2.8 40 335-386 5-44 (70)
125 1x64_A Alpha-actinin-2 associa 36.1 27 0.00093 28.0 3.5 41 334-386 24-64 (89)
126 2g6q_A Inhibitor of growth pro 35.4 7.4 0.00025 29.9 -0.2 43 335-381 11-59 (62)
127 2cu8_A Cysteine-rich protein 2 34.3 21 0.00071 27.7 2.4 39 335-385 9-48 (76)
128 2ysm_A Myeloid/lymphoid or mix 34.3 5.3 0.00018 34.1 -1.3 46 337-382 56-104 (111)
129 1vfy_A Phosphatidylinositol-3- 34.2 18 0.00062 28.4 2.0 28 335-362 11-42 (73)
130 1wyh_A SLIM 2, skeletal muscle 34.0 26 0.00089 26.6 2.9 40 335-386 5-46 (72)
131 3v43_A Histone acetyltransfera 34.0 30 0.001 29.4 3.5 43 335-380 5-62 (112)
132 1wep_A PHF8; structural genomi 32.8 24 0.00082 28.1 2.5 48 336-384 13-65 (79)
133 1nyp_A Pinch protein; LIM doma 32.4 23 0.00078 26.5 2.2 39 335-385 5-43 (66)
134 2gmg_A Hypothetical protein PF 32.4 21 0.00071 30.4 2.1 29 348-385 68-96 (105)
135 1x4l_A Skeletal muscle LIM-pro 32.3 29 0.001 26.4 2.9 39 335-385 5-47 (72)
136 2lv9_A Histone-lysine N-methyl 32.2 10 0.00035 31.8 0.2 43 337-381 30-75 (98)
137 2cur_A Skeletal muscle LIM-pro 31.9 21 0.00073 27.0 2.0 38 335-384 5-42 (69)
138 1v6g_A Actin binding LIM prote 31.6 30 0.001 27.1 3.0 40 335-386 15-54 (81)
139 2ri7_A Nucleosome-remodeling f 31.5 9.2 0.00031 35.1 -0.2 48 334-382 7-59 (174)
140 1wig_A KIAA1808 protein; LIM d 31.3 29 0.00099 26.8 2.7 39 335-385 5-43 (73)
141 1x68_A FHL5 protein; four-and- 30.9 25 0.00087 27.2 2.3 38 335-384 5-46 (76)
142 2kwj_A Zinc finger protein DPF 30.7 13 0.00046 31.8 0.7 42 336-380 2-59 (114)
143 1x6a_A LIMK-2, LIM domain kina 30.2 32 0.0011 26.9 2.9 39 335-385 15-53 (81)
144 2cor_A Pinch protein; LIM doma 29.9 30 0.001 27.2 2.6 40 335-386 15-54 (79)
145 2o35_A Hypothetical protein DU 29.6 20 0.00068 30.1 1.5 12 357-368 43-54 (105)
146 4fo9_A E3 SUMO-protein ligase 29.6 38 0.0013 35.1 4.0 51 335-386 215-267 (360)
147 3fyb_A Protein of unknown func 29.6 20 0.00069 30.1 1.5 12 357-368 42-53 (104)
148 1y02_A CARP2, FYVE-ring finger 29.2 6.3 0.00021 34.5 -1.7 43 336-382 20-66 (120)
149 3o70_A PHD finger protein 13; 28.3 10 0.00034 29.6 -0.5 45 335-381 19-66 (68)
150 1dvp_A HRS, hepatocyte growth 28.2 19 0.00065 34.4 1.4 28 335-362 161-192 (220)
151 1z2q_A LM5-1; membrane protein 28.0 24 0.00082 28.5 1.7 29 335-363 21-53 (84)
152 1x4k_A Skeletal muscle LIM-pro 27.9 35 0.0012 25.9 2.7 40 335-386 5-46 (72)
153 2kgg_A Histone demethylase jar 27.9 7.1 0.00024 28.7 -1.4 41 337-380 4-52 (52)
154 3t7l_A Zinc finger FYVE domain 27.8 26 0.00088 28.8 1.9 30 335-364 20-53 (90)
155 1wfk_A Zinc finger, FYVE domai 27.5 22 0.00074 29.1 1.4 29 335-363 9-41 (88)
156 1iml_A CRIP, cysteine rich int 27.5 31 0.0011 26.6 2.3 38 337-386 2-40 (76)
157 1x63_A Skeletal muscle LIM-pro 27.4 42 0.0014 26.2 3.1 40 335-386 15-56 (82)
158 2dlo_A Thyroid receptor-intera 27.0 37 0.0013 26.5 2.7 40 334-385 14-53 (81)
159 3zyq_A Hepatocyte growth facto 26.9 22 0.00075 34.3 1.5 29 335-363 164-196 (226)
160 2vpb_A Hpygo1, pygopus homolog 26.7 28 0.00095 26.8 1.8 47 334-380 7-64 (65)
161 2yw8_A RUN and FYVE domain-con 26.5 27 0.00091 28.1 1.7 28 336-363 20-51 (82)
162 2lfh_A DNA-binding protein inh 26.4 44 0.0015 26.1 2.9 32 545-576 26-63 (68)
163 1x4u_A Zinc finger, FYVE domai 25.7 26 0.00088 28.3 1.5 27 336-362 15-45 (84)
164 1x3h_A Leupaxin; paxillin fami 25.6 38 0.0013 26.3 2.5 40 335-386 15-54 (80)
165 2l43_A N-teminal domain from h 25.6 42 0.0014 27.4 2.8 50 333-384 23-77 (88)
166 2cuq_A Four and A half LIM dom 25.3 39 0.0013 26.2 2.5 38 335-384 15-52 (80)
167 2fiy_A Protein FDHE homolog; F 24.9 14 0.00048 37.6 -0.3 45 334-382 181-231 (309)
168 1wem_A Death associated transc 24.6 18 0.00061 28.6 0.3 47 336-383 17-71 (76)
169 2kwj_A Zinc finger protein DPF 24.4 7.6 0.00026 33.4 -2.1 47 337-383 60-109 (114)
170 2d8v_A Zinc finger FYVE domain 24.2 32 0.0011 26.8 1.7 30 334-364 7-37 (67)
171 2co8_A NEDD9 interacting prote 24.1 49 0.0017 26.1 2.9 41 334-386 14-55 (82)
172 1x61_A Thyroid receptor intera 23.9 49 0.0017 25.1 2.8 38 335-384 5-44 (72)
173 2zet_C Melanophilin; complex, 23.4 71 0.0024 28.9 4.2 46 334-382 67-117 (153)
174 1g47_A Pinch protein; LIM doma 23.4 46 0.0016 25.6 2.6 41 334-386 10-52 (77)
175 1zfo_A LAsp-1; LIM domain, zin 23.2 43 0.0015 21.7 1.9 26 336-361 4-30 (31)
176 1wee_A PHD finger family prote 23.1 9.2 0.00032 30.0 -1.6 46 336-382 17-66 (72)
177 3mpx_A FYVE, rhogef and PH dom 23.0 18 0.0006 38.0 0.0 32 335-366 375-410 (434)
178 1wgl_A TOLL-interacting protei 22.3 73 0.0025 24.0 3.4 24 549-572 10-33 (59)
179 2l4z_A DNA endonuclease RBBP8, 22.1 36 0.0012 29.4 1.9 38 335-384 61-99 (123)
180 1z60_A TFIIH basal transcripti 21.7 44 0.0015 25.4 2.0 40 336-379 16-58 (59)
181 2egq_A FHL1 protein; LIM domai 21.2 49 0.0017 25.4 2.4 39 335-385 15-58 (77)
182 2dj7_A Actin-binding LIM prote 20.8 51 0.0017 25.9 2.4 39 334-384 14-53 (80)
183 2jne_A Hypothetical protein YF 20.6 5.4 0.00018 33.5 -3.6 42 335-385 32-73 (101)
184 2ku3_A Bromodomain-containing 20.4 55 0.0019 25.6 2.4 46 334-381 15-65 (71)
185 3f6q_B LIM and senescent cell 20.1 55 0.0019 24.5 2.4 40 335-386 11-52 (72)
No 1
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=99.19 E-value=6.5e-12 Score=96.05 Aligned_cols=47 Identities=36% Similarity=0.838 Sum_probs=41.2
Q ss_pred CCCccccccccccc---ceeec-cCCcccHhHHHHHHhcCCCCCCCCcccccCCc
Q 007807 334 YDDECAICREPMAK---AKKLL-CNHLFHLACLRSWLDQGLNEMYSCPTCRKPLF 384 (589)
Q Consensus 334 ~~~~C~IC~e~~~~---~~~lp-C~H~Fh~~Cl~~Wl~~~~~~~~~CP~CR~~~~ 384 (589)
.+.+|+||++.+.+ +..++ |||.||..|+.+|+++ +.+||+||+++.
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~----~~~CP~Cr~~~~ 54 (55)
T 1iym_A 4 DGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGS----HSTCPLCRLTVV 54 (55)
T ss_dssp CSCCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTTT----CCSCSSSCCCSC
T ss_pred CCCcCccCCccccCCCceEECCCCCCcccHHHHHHHHHc----CCcCcCCCCEeE
Confidence 45689999999987 56777 9999999999999987 589999998764
No 2
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.19 E-value=1.2e-11 Score=101.60 Aligned_cols=50 Identities=46% Similarity=0.953 Sum_probs=43.4
Q ss_pred cCCCcccccccccccc---eeeccCCcccHhHHHHHHhcCCCCCCCCcccccCCcCC
Q 007807 333 AYDDECAICREPMAKA---KKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFVG 386 (589)
Q Consensus 333 ~~~~~C~IC~e~~~~~---~~lpC~H~Fh~~Cl~~Wl~~~~~~~~~CP~CR~~~~~~ 386 (589)
..+..|+||++.+..+ +.++|+|.||..||.+|+++ +.+||+||+.+...
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~----~~~CP~Cr~~~~~~ 65 (78)
T 2ect_A 13 GSGLECPVCKEDYALGESVRQLPCNHLFHDSCIVPWLEQ----HDSCPVCRKSLTGQ 65 (78)
T ss_dssp SSSCCCTTTTSCCCTTSCEEECTTSCEEETTTTHHHHTT----TCSCTTTCCCCCCS
T ss_pred CCCCCCeeCCccccCCCCEEEeCCCCeecHHHHHHHHHc----CCcCcCcCCccCCc
Confidence 4567999999999765 45699999999999999987 58999999998765
No 3
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.19 E-value=6.2e-12 Score=102.65 Aligned_cols=49 Identities=31% Similarity=0.712 Sum_probs=43.2
Q ss_pred cCCCcccccccccccc---eeeccCCcccHhHHHHHHhcCCCCCCCCcccccCCcC
Q 007807 333 AYDDECAICREPMAKA---KKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFV 385 (589)
Q Consensus 333 ~~~~~C~IC~e~~~~~---~~lpC~H~Fh~~Cl~~Wl~~~~~~~~~CP~CR~~~~~ 385 (589)
..+..|+||++.+..+ +.++|+|.||..|+.+|+++ +.+||+||+++..
T Consensus 21 ~~~~~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~w~~~----~~~CP~Cr~~~~~ 72 (75)
T 1x4j_A 21 SEQTLCVVCMCDFESRQLLRVLPCNHEFHAKCVDKWLKA----NRTCPICRADSGP 72 (75)
T ss_dssp SSCCEETTTTEECCBTCEEEEETTTEEEETTHHHHHHHH----CSSCTTTCCCCCC
T ss_pred CCCCCCeECCcccCCCCeEEEECCCCHhHHHHHHHHHHc----CCcCcCcCCcCCC
Confidence 3567899999999876 67899999999999999998 5899999998865
No 4
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=99.18 E-value=1.5e-11 Score=98.63 Aligned_cols=50 Identities=32% Similarity=0.820 Sum_probs=42.8
Q ss_pred cCCCccccccccccc---ceeeccCCcccHhHHHHHHhcCCCCCCCCcccccCCcCC
Q 007807 333 AYDDECAICREPMAK---AKKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFVG 386 (589)
Q Consensus 333 ~~~~~C~IC~e~~~~---~~~lpC~H~Fh~~Cl~~Wl~~~~~~~~~CP~CR~~~~~~ 386 (589)
..+..|+||++.+.. ++.++|||.||..|+.+|+.+ +.+||+||..+...
T Consensus 12 ~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~----~~~CP~Cr~~~~~~ 64 (69)
T 2kiz_A 12 DTEEKCTICLSILEEGEDVRRLPCMHLFHQVCVDQWLIT----NKKCPICRVDIEAQ 64 (69)
T ss_dssp TCCCSBTTTTBCCCSSSCEEECTTSCEEEHHHHHHHHHH----CSBCTTTCSBSCSC
T ss_pred CCCCCCeeCCccccCCCcEEEeCCCCHHHHHHHHHHHHc----CCCCcCcCccccCc
Confidence 356789999999853 467899999999999999998 57899999998754
No 5
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=99.16 E-value=1.6e-11 Score=93.81 Aligned_cols=47 Identities=36% Similarity=0.776 Sum_probs=41.1
Q ss_pred CCCccccccccccc----ceeeccCCcccHhHHHHHHhcCCCCCCCCcccccCCc
Q 007807 334 YDDECAICREPMAK----AKKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLF 384 (589)
Q Consensus 334 ~~~~C~IC~e~~~~----~~~lpC~H~Fh~~Cl~~Wl~~~~~~~~~CP~CR~~~~ 384 (589)
.+..|+||++.+.+ ++.++|+|.||..|+.+|+++ ..+||+||+++.
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~----~~~CP~Cr~~~~ 54 (55)
T 2ecm_A 4 GSSGCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKE----GYRCPLCSGPSS 54 (55)
T ss_dssp CCCSCTTTCCCCCTTTSCEEECTTSCEEETTHHHHHHHH----TCCCTTSCCSSC
T ss_pred CCCcCcccChhhcCCCcCeEecCCCCcccHHHHHHHHHc----CCcCCCCCCcCC
Confidence 45689999999865 567899999999999999998 589999998764
No 6
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.15 E-value=1.3e-11 Score=102.54 Aligned_cols=49 Identities=37% Similarity=0.777 Sum_probs=40.7
Q ss_pred CCCccccccccccc--------------ceeec-cCCcccHhHHHHHHhcCCCCCCCCcccccCCcCC
Q 007807 334 YDDECAICREPMAK--------------AKKLL-CNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFVG 386 (589)
Q Consensus 334 ~~~~C~IC~e~~~~--------------~~~lp-C~H~Fh~~Cl~~Wl~~~~~~~~~CP~CR~~~~~~ 386 (589)
.++.|+||++++.+ .+.++ |+|.||..||.+|+.+ +.+||+||+++...
T Consensus 14 ~~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~----~~~CP~CR~~~~~~ 77 (81)
T 2ecl_A 14 ECDTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQ----NNRCPLCQQDWVVQ 77 (81)
T ss_dssp CCSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCEEEHHHHHHHTTT----CCBCTTTCCBCCEE
T ss_pred CCCCCcccChhhhccCcccccccCCCceEEEeCCCCCccChHHHHHHHHh----CCCCCCcCCCcchh
Confidence 46689999998865 34555 9999999999999998 58999999987643
No 7
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=99.15 E-value=1.4e-11 Score=99.10 Aligned_cols=49 Identities=33% Similarity=0.665 Sum_probs=43.6
Q ss_pred CCCcccccccccccc-------eeeccCCcccHhHHHHHHhcCCCCCCCCcccccCCcCC
Q 007807 334 YDDECAICREPMAKA-------KKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFVG 386 (589)
Q Consensus 334 ~~~~C~IC~e~~~~~-------~~lpC~H~Fh~~Cl~~Wl~~~~~~~~~CP~CR~~~~~~ 386 (589)
.+..|+||++.+.++ +.++|||.||..|+.+|+++ +.+||+||.++...
T Consensus 9 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~----~~~CP~Cr~~~~~~ 64 (71)
T 3ng2_A 9 GTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN----ANTCPTCRKKINHK 64 (71)
T ss_dssp TCCBCTTTCCBHHHHHTTTCCEEECTTSCEEEHHHHHHHHHH----CSBCTTTCCBCCCC
T ss_pred CCCCCcccChhhhccccccCCeEeCCCCChHhHHHHHHHHHc----CCCCCCCCCccChh
Confidence 456899999999887 78899999999999999998 58999999988754
No 8
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.15 E-value=1.4e-11 Score=98.33 Aligned_cols=49 Identities=33% Similarity=0.680 Sum_probs=43.0
Q ss_pred cCCCcccccccccccc-------eeeccCCcccHhHHHHHHhcCCCCCCCCcccccCCcC
Q 007807 333 AYDDECAICREPMAKA-------KKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFV 385 (589)
Q Consensus 333 ~~~~~C~IC~e~~~~~-------~~lpC~H~Fh~~Cl~~Wl~~~~~~~~~CP~CR~~~~~ 385 (589)
..+..|+||++.+.++ +.++|||.||..|+.+|+.+ +..||+||.++..
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~----~~~CP~Cr~~~~~ 68 (69)
T 2ea6_A 13 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN----ANTCPTCRKKINH 68 (69)
T ss_dssp TCCCCCTTTCCCHHHHTTTTCCEEECSSSCEEEHHHHHHHHHH----CSSCTTTCCCCCC
T ss_pred CCCCCCcccCccccccccccCCeEeCCCCChhcHHHHHHHHHc----CCCCCCCCCccCc
Confidence 3567899999999876 77899999999999999998 5899999998753
No 9
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.15 E-value=2.5e-11 Score=98.28 Aligned_cols=50 Identities=22% Similarity=0.474 Sum_probs=44.7
Q ss_pred CCCcccccccccccceee-ccCCcccHhHHHHHHhcCCCCCCCCcccccCCcCCC
Q 007807 334 YDDECAICREPMAKAKKL-LCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFVGR 387 (589)
Q Consensus 334 ~~~~C~IC~e~~~~~~~l-pC~H~Fh~~Cl~~Wl~~~~~~~~~CP~CR~~~~~~~ 387 (589)
.+..|+||++.+.+++.+ +|||.||..||.+|++. +..||+||+.+...+
T Consensus 14 ~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~----~~~CP~Cr~~~~~~~ 64 (72)
T 2djb_A 14 PYILCSICKGYLIDATTITECLHTFCKSCIVRHFYY----SNRCPKCNIVVHQTQ 64 (72)
T ss_dssp GGGSCTTTSSCCSSCEECSSSCCEECHHHHHHHHHH----CSSCTTTCCCCCSSC
T ss_pred CCCCCCCCChHHHCcCEECCCCCHHHHHHHHHHHHc----CCcCCCcCcccCccc
Confidence 456899999999999887 99999999999999987 589999999987653
No 10
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=99.14 E-value=1.3e-11 Score=104.75 Aligned_cols=48 Identities=35% Similarity=0.782 Sum_probs=42.4
Q ss_pred CCCccccccccccc---ceeeccCCcccHhHHHHHHhcCCCCCCCCcccccCCcC
Q 007807 334 YDDECAICREPMAK---AKKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFV 385 (589)
Q Consensus 334 ~~~~C~IC~e~~~~---~~~lpC~H~Fh~~Cl~~Wl~~~~~~~~~CP~CR~~~~~ 385 (589)
.+..|+||++.+.. ++.++|+|.||..||.+|+.+ +.+||+||..+..
T Consensus 39 ~~~~C~IC~~~~~~~~~~~~l~C~H~Fh~~Ci~~wl~~----~~~CP~Cr~~~~~ 89 (91)
T 2l0b_A 39 QEMCCPICCSEYVKGDVATELPCHHYFHKPCVSIWLQK----SGTCPVCRCMFPP 89 (91)
T ss_dssp SCSEETTTTEECCTTCEEEEETTTEEEEHHHHHHHHTT----TCBCTTTCCBSSC
T ss_pred CCCCCcccChhhcCCCcEEecCCCChHHHHHHHHHHHc----CCcCcCcCccCCC
Confidence 45689999999977 677899999999999999987 5899999998764
No 11
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.14 E-value=2.4e-11 Score=98.69 Aligned_cols=50 Identities=32% Similarity=0.774 Sum_probs=42.7
Q ss_pred cCCCccccccccccccee---eccCCcccHhHHHHHHhcCCCCCCCCcccccCCcCC
Q 007807 333 AYDDECAICREPMAKAKK---LLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFVG 386 (589)
Q Consensus 333 ~~~~~C~IC~e~~~~~~~---lpC~H~Fh~~Cl~~Wl~~~~~~~~~CP~CR~~~~~~ 386 (589)
..+..|+||++.+..+.. ++|+|.||..|+.+|+++ +.+||+||+++...
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~~~~~----~~~CP~Cr~~~~~~ 65 (74)
T 2ep4_A 13 NLHELCAVCLEDFKPRDELGICPCKHAFHRKCLIKWLEV----RKVCPLCNMPVLQL 65 (74)
T ss_dssp CCSCBCSSSCCBCCSSSCEEEETTTEEEEHHHHHHHHHH----CSBCTTTCCBCSSC
T ss_pred CCCCCCcCCCcccCCCCcEEEcCCCCEecHHHHHHHHHc----CCcCCCcCcccccc
Confidence 346789999999987644 499999999999999998 57999999998653
No 12
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=99.13 E-value=2.9e-11 Score=96.48 Aligned_cols=48 Identities=31% Similarity=0.766 Sum_probs=42.9
Q ss_pred CCCcccccccccccc-eeeccCCcccHhHHHHHHhcCCCCCCCCcccccCCcC
Q 007807 334 YDDECAICREPMAKA-KKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFV 385 (589)
Q Consensus 334 ~~~~C~IC~e~~~~~-~~lpC~H~Fh~~Cl~~Wl~~~~~~~~~CP~CR~~~~~ 385 (589)
.+..|+||++.+.++ +.++|||.||..|+.+|+++ +.+||+||.++..
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~C~H~fc~~Ci~~~~~~----~~~CP~Cr~~~~~ 52 (68)
T 1chc_A 4 VAERCPICLEDPSNYSMALPCLHAFCYVCITRWIRQ----NPTCPLCKVPVES 52 (68)
T ss_dssp CCCCCSSCCSCCCSCEEETTTTEEESTTHHHHHHHH----SCSTTTTCCCCCC
T ss_pred CCCCCeeCCccccCCcEecCCCCeeHHHHHHHHHhC----cCcCcCCChhhHh
Confidence 456899999999886 77899999999999999988 5899999998864
No 13
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.13 E-value=9.5e-12 Score=100.51 Aligned_cols=49 Identities=27% Similarity=0.510 Sum_probs=44.4
Q ss_pred CCCcccccccccccceeeccCCcccHhHHHHHHhcCCCCCCCCcccccCCcCC
Q 007807 334 YDDECAICREPMAKAKKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFVG 386 (589)
Q Consensus 334 ~~~~C~IC~e~~~~~~~lpC~H~Fh~~Cl~~Wl~~~~~~~~~CP~CR~~~~~~ 386 (589)
.+..|+||++.+.+++.++|||.||..|+.+|+.+ ...||+||..+...
T Consensus 14 ~~~~C~IC~~~~~~~~~~~CgH~fC~~Ci~~~~~~----~~~CP~Cr~~~~~~ 62 (71)
T 2d8t_A 14 TVPECAICLQTCVHPVSLPCKHVFCYLCVKGASWL----GKRCALCRQEIPED 62 (71)
T ss_dssp SCCBCSSSSSBCSSEEEETTTEEEEHHHHHHCTTC----SSBCSSSCCBCCHH
T ss_pred CCCCCccCCcccCCCEEccCCCHHHHHHHHHHHHC----CCcCcCcCchhCHh
Confidence 45689999999999999999999999999999987 58999999988643
No 14
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=99.12 E-value=3.3e-11 Score=110.20 Aligned_cols=49 Identities=33% Similarity=0.764 Sum_probs=44.0
Q ss_pred CCCcccccccccccceeeccCCcccHhHHHHHHhcCCCCCCCCcccccCCcCC
Q 007807 334 YDDECAICREPMAKAKKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFVG 386 (589)
Q Consensus 334 ~~~~C~IC~e~~~~~~~lpC~H~Fh~~Cl~~Wl~~~~~~~~~CP~CR~~~~~~ 386 (589)
.+..|+||++.+.+|+.+||||.||..|+..|+.+ +.+||+||.++...
T Consensus 52 ~~~~C~iC~~~~~~~~~~~CgH~fc~~Ci~~~~~~----~~~CP~Cr~~~~~~ 100 (138)
T 4ayc_A 52 NELQCIICSEYFIEAVTLNCAHSFCSYCINEWMKR----KIECPICRKDIKSK 100 (138)
T ss_dssp HHSBCTTTCSBCSSEEEETTSCEEEHHHHHHHTTT----CSBCTTTCCBCCCE
T ss_pred ccCCCcccCcccCCceECCCCCCccHHHHHHHHHc----CCcCCCCCCcCCCC
Confidence 34579999999999999999999999999999987 58999999988643
No 15
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=99.11 E-value=2.6e-11 Score=95.30 Aligned_cols=48 Identities=33% Similarity=0.686 Sum_probs=42.8
Q ss_pred CCcccccccccccc-------eeeccCCcccHhHHHHHHhcCCCCCCCCcccccCCcCC
Q 007807 335 DDECAICREPMAKA-------KKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFVG 386 (589)
Q Consensus 335 ~~~C~IC~e~~~~~-------~~lpC~H~Fh~~Cl~~Wl~~~~~~~~~CP~CR~~~~~~ 386 (589)
+..|+||++.+.++ +.++|||.||..|+.+|+++ +.+||+||.++...
T Consensus 3 ~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~----~~~CP~Cr~~~~~~ 57 (64)
T 2xeu_A 3 MVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN----ANTCPTCRKKINHK 57 (64)
T ss_dssp CCBCTTTCCBHHHHHHTTCCEEEETTSCEEEHHHHHHHHHH----CSBCTTTCCBCTTT
T ss_pred CCCCCccChhhhCccccCCCEEeCCCCCchhHHHHHHHHHc----CCCCCCCCccCCcc
Confidence 46899999999876 67899999999999999998 58999999988754
No 16
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=99.11 E-value=3.3e-11 Score=106.22 Aligned_cols=53 Identities=32% Similarity=0.659 Sum_probs=41.7
Q ss_pred CCCcccccccccccce------------------eeccCCcccHhHHHHHHhcCC-CCCCCCcccccCCcCC
Q 007807 334 YDDECAICREPMAKAK------------------KLLCNHLFHLACLRSWLDQGL-NEMYSCPTCRKPLFVG 386 (589)
Q Consensus 334 ~~~~C~IC~e~~~~~~------------------~lpC~H~Fh~~Cl~~Wl~~~~-~~~~~CP~CR~~~~~~ 386 (589)
.++.|+||++.+..+. .++|+|.||..||.+|+.... ..+.+||+||..+...
T Consensus 24 ~~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~~~~ 95 (114)
T 1v87_A 24 PEEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYGEK 95 (114)
T ss_dssp CSCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTCCSSCCBCTTTCCBSSSC
T ss_pred CCCcCccCChhhcCcccccccccccccCcccceecCCCCCcccHHHHHHHHHcccCCCCCcCCCCCCccCCC
Confidence 3568999999996543 679999999999999995321 1257999999988654
No 17
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.09 E-value=4.5e-11 Score=95.03 Aligned_cols=50 Identities=20% Similarity=0.533 Sum_probs=43.8
Q ss_pred CCCcccccccccccceeeccCCcccHhHHHHHHhcCCCCCCCCcccccCCcCC
Q 007807 334 YDDECAICREPMAKAKKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFVG 386 (589)
Q Consensus 334 ~~~~C~IC~e~~~~~~~lpC~H~Fh~~Cl~~Wl~~~~~~~~~CP~CR~~~~~~ 386 (589)
.+..|+||++.+.+++.++|||.||..|+.+|+.+. ...||+||+++...
T Consensus 14 ~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~---~~~CP~Cr~~~~~~ 63 (66)
T 2ecy_A 14 DKYKCEKCHLVLCSPKQTECGHRFCESCMAALLSSS---SPKCTACQESIVKD 63 (66)
T ss_dssp CCEECTTTCCEESSCCCCSSSCCCCHHHHHHHHTTS---SCCCTTTCCCCCTT
T ss_pred cCCCCCCCChHhcCeeECCCCCHHHHHHHHHHHHhC---cCCCCCCCcCCChh
Confidence 456899999999999999999999999999999642 57999999988653
No 18
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=99.08 E-value=7.8e-11 Score=95.99 Aligned_cols=50 Identities=26% Similarity=0.528 Sum_probs=43.1
Q ss_pred CCCcccccccccccceeec-cCCcccHhHHHHHHhcCCCCCCCCcccccCCcC
Q 007807 334 YDDECAICREPMAKAKKLL-CNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFV 385 (589)
Q Consensus 334 ~~~~C~IC~e~~~~~~~lp-C~H~Fh~~Cl~~Wl~~~~~~~~~CP~CR~~~~~ 385 (589)
.+..|+||++.+.+++.++ |||.||..||..|+.+.. ...||+||+++..
T Consensus 14 ~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~--~~~CP~Cr~~~~~ 64 (74)
T 2yur_A 14 DELLCLICKDIMTDAVVIPCCGNSYCDECIRTALLESD--EHTCPTCHQNDVS 64 (74)
T ss_dssp GGGSCSSSCCCCTTCEECSSSCCEECTTHHHHHHHHSS--SSCCSSSCCSSCC
T ss_pred CCCCCcCCChHHhCCeEcCCCCCHHHHHHHHHHHHhcC--CCcCCCCCCcCCC
Confidence 4568999999999999999 999999999999998631 3699999997654
No 19
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.06 E-value=6.6e-11 Score=97.99 Aligned_cols=47 Identities=23% Similarity=0.498 Sum_probs=43.3
Q ss_pred CCCcccccccccccceeeccCCcccHhHHHHHHhcCCCCCCCCcccccCCc
Q 007807 334 YDDECAICREPMAKAKKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLF 384 (589)
Q Consensus 334 ~~~~C~IC~e~~~~~~~lpC~H~Fh~~Cl~~Wl~~~~~~~~~CP~CR~~~~ 384 (589)
.+..|+||++.+.+++.++|||.||..|+.+|++. ...||+||..+.
T Consensus 14 ~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~----~~~CP~Cr~~~~ 60 (81)
T 2csy_A 14 IPFRCFICRQAFQNPVVTKCRHYFCESCALEHFRA----TPRCYICDQPTG 60 (81)
T ss_dssp CCSBCSSSCSBCCSEEECTTSCEEEHHHHHHHHHH----CSBCSSSCCBCC
T ss_pred CCCCCcCCCchhcCeeEccCCCHhHHHHHHHHHHC----CCcCCCcCcccc
Confidence 45689999999999999999999999999999987 589999999885
No 20
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.06 E-value=6.8e-11 Score=95.63 Aligned_cols=53 Identities=23% Similarity=0.582 Sum_probs=44.7
Q ss_pred cCCCcccccccccccceeeccCCcccHhHHHHHHhcCCCCCCCCcccccCCcCC
Q 007807 333 AYDDECAICREPMAKAKKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFVG 386 (589)
Q Consensus 333 ~~~~~C~IC~e~~~~~~~lpC~H~Fh~~Cl~~Wl~~~~~~~~~CP~CR~~~~~~ 386 (589)
..+..|+||++.+.+++.++|||.||..|+..|++... ....||+||..+...
T Consensus 18 ~~~~~C~IC~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~-~~~~CP~Cr~~~~~~ 70 (73)
T 2ysl_A 18 QEEVICPICLDILQKPVTIDCGHNFCLKCITQIGETSC-GFFKCPLCKTSVRKN 70 (73)
T ss_dssp CCCCBCTTTCSBCSSEEECTTCCEEEHHHHHHHCSSSC-SCCCCSSSCCCCCCC
T ss_pred ccCCEeccCCcccCCeEEcCCCChhhHHHHHHHHHcCC-CCCCCCCCCCcCCcc
Confidence 34678999999999999999999999999999997311 157999999988654
No 21
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=99.05 E-value=7.8e-11 Score=103.05 Aligned_cols=47 Identities=34% Similarity=0.745 Sum_probs=40.7
Q ss_pred CCCcccccccccccc------------------eeeccCCcccHhHHHHHHhcCCCCCCCCcccccCCc
Q 007807 334 YDDECAICREPMAKA------------------KKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLF 384 (589)
Q Consensus 334 ~~~~C~IC~e~~~~~------------------~~lpC~H~Fh~~Cl~~Wl~~~~~~~~~CP~CR~~~~ 384 (589)
.++.|+||++.+.++ +.++|+|.||..||.+|+.+ +.+||+||+++.
T Consensus 36 ~~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~----~~~CP~Cr~~~~ 100 (106)
T 3dpl_R 36 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKT----RQVCPLDNREWE 100 (106)
T ss_dssp CSCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCEEEHHHHHHHHTT----CSBCSSSCSBCC
T ss_pred CCCCCccCChhHhCcCchhhccccccCCccceEeecccCcEECHHHHHHHHHc----CCcCcCCCCcce
Confidence 467899999998754 34699999999999999998 689999999864
No 22
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=99.05 E-value=9.9e-11 Score=96.06 Aligned_cols=50 Identities=22% Similarity=0.459 Sum_probs=44.5
Q ss_pred CCCcccccccccccceeeccCCcccHhHHHHHHhcCCCCCCCCcccccCCcCC
Q 007807 334 YDDECAICREPMAKAKKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFVG 386 (589)
Q Consensus 334 ~~~~C~IC~e~~~~~~~lpC~H~Fh~~Cl~~Wl~~~~~~~~~CP~CR~~~~~~ 386 (589)
.+..|+||++.+.+|+.++|||.||..||.+|++++ +.+||+||.++...
T Consensus 7 ~~~~C~IC~~~~~~Pv~~~CgH~fc~~Ci~~~~~~~---~~~CP~C~~~~~~~ 56 (78)
T 1t1h_A 7 EYFRCPISLELMKDPVIVSTGQTYERSSIQKWLDAG---HKTCPKSQETLLHA 56 (78)
T ss_dssp SSSSCTTTSCCCSSEEEETTTEEEEHHHHHHHHTTT---CCBCTTTCCBCSSC
T ss_pred ccCCCCCccccccCCEEcCCCCeecHHHHHHHHHHC---cCCCCCCcCCCChh
Confidence 456899999999999999999999999999999864 57999999988643
No 23
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.03 E-value=1.2e-10 Score=97.44 Aligned_cols=53 Identities=30% Similarity=0.558 Sum_probs=44.6
Q ss_pred cCCCccccccccccc----ceeeccCCcccHhHHHHHHhcCCCCCCCCcccccCCcCC
Q 007807 333 AYDDECAICREPMAK----AKKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFVG 386 (589)
Q Consensus 333 ~~~~~C~IC~e~~~~----~~~lpC~H~Fh~~Cl~~Wl~~~~~~~~~CP~CR~~~~~~ 386 (589)
..+..|+||++.+.+ ++.++|||.||..|+.+|++... ....||+||+.+...
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~-~~~~CP~Cr~~~~~~ 69 (88)
T 2ct2_A 13 REVLECPICMESFTEEQLRPKLLHCGHTICRQCLEKLLASSI-NGVRCPFCSKITRIT 69 (88)
T ss_dssp CSCCBCTTTCCBCCTTSSCEEECSSSCEEEHHHHHHHHHHCS-SCBCCTTTCCCBCCS
T ss_pred cCCCCCccCCccccccCCCeEECCCCChhhHHHHHHHHHcCC-CCcCCCCCCCcccch
Confidence 356789999999998 88999999999999999998731 137999999987654
No 24
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.03 E-value=5e-11 Score=95.78 Aligned_cols=48 Identities=33% Similarity=0.771 Sum_probs=43.3
Q ss_pred CCCcccccccccccceeeccCCcccHhHHHHHHhcCCCCCCCCcccccCCcCC
Q 007807 334 YDDECAICREPMAKAKKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFVG 386 (589)
Q Consensus 334 ~~~~C~IC~e~~~~~~~lpC~H~Fh~~Cl~~Wl~~~~~~~~~CP~CR~~~~~~ 386 (589)
.+..|+||++.+.+ +.++|||.||..|+.+|+.+ ...||+||.++...
T Consensus 14 ~~~~C~IC~~~~~~-~~~~CgH~fc~~Ci~~~~~~----~~~CP~Cr~~~~~~ 61 (70)
T 2ecn_A 14 DEEECCICMDGRAD-LILPCAHSFCQKCIDKWSDR----HRNCPICRLQMTGA 61 (70)
T ss_dssp CCCCCSSSCCSCCS-EEETTTEEECHHHHHHSSCC----CSSCHHHHHCTTCC
T ss_pred CCCCCeeCCcCccC-cccCCCCcccHHHHHHHHHC----cCcCCCcCCcccCC
Confidence 45689999999999 88999999999999999986 68999999988754
No 25
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=99.00 E-value=2.4e-10 Score=102.40 Aligned_cols=49 Identities=27% Similarity=0.557 Sum_probs=43.6
Q ss_pred CCCcccccccccccceeeccCCcccHhHHHHHHhcCCCCCCCCcccccCCcC
Q 007807 334 YDDECAICREPMAKAKKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFV 385 (589)
Q Consensus 334 ~~~~C~IC~e~~~~~~~lpC~H~Fh~~Cl~~Wl~~~~~~~~~CP~CR~~~~~ 385 (589)
.+..|+||++.+.+|+.++|||.||..||..|+..+ ...||+||.++..
T Consensus 51 ~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~---~~~CP~Cr~~~~~ 99 (124)
T 3fl2_A 51 ETFQCICCQELVFRPITTVCQHNVCKDCLDRSFRAQ---VFSCPACRYDLGR 99 (124)
T ss_dssp HHTBCTTTSSBCSSEEECTTSCEEEHHHHHHHHHTT---CCBCTTTCCBCCT
T ss_pred cCCCCCcCChHHcCcEEeeCCCcccHHHHHHHHhHC---cCCCCCCCccCCC
Confidence 456899999999999999999999999999999853 4699999998865
No 26
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=98.98 E-value=1.2e-10 Score=100.62 Aligned_cols=49 Identities=35% Similarity=0.783 Sum_probs=43.5
Q ss_pred CCCccccccccccccee-eccCCcccHhHHHHHHhcCCCCCCCCcccccCCcC
Q 007807 334 YDDECAICREPMAKAKK-LLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFV 385 (589)
Q Consensus 334 ~~~~C~IC~e~~~~~~~-lpC~H~Fh~~Cl~~Wl~~~~~~~~~CP~CR~~~~~ 385 (589)
.+..|+||++.+.+|+. ++|||.||..||.+|+... ...||+||.++..
T Consensus 21 ~~~~C~IC~~~~~~p~~~~~CgH~FC~~Ci~~~~~~~---~~~CP~Cr~~~~~ 70 (100)
T 3lrq_A 21 EVFRCFICMEKLRDARLCPHCSKLCCFSCIRRWLTEQ---RAQCPHCRAPLQL 70 (100)
T ss_dssp HHTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHHHT---CSBCTTTCCBCCG
T ss_pred CCCCCccCCccccCccccCCCCChhhHHHHHHHHHHC---cCCCCCCCCcCCH
Confidence 34589999999999999 9999999999999999983 2699999999864
No 27
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.98 E-value=2.8e-10 Score=89.44 Aligned_cols=46 Identities=26% Similarity=0.666 Sum_probs=39.6
Q ss_pred cCCCcccccccccccceeeccCCcccHhHHHHHHhcCCCCCCCCccc
Q 007807 333 AYDDECAICREPMAKAKKLLCNHLFHLACLRSWLDQGLNEMYSCPTC 379 (589)
Q Consensus 333 ~~~~~C~IC~e~~~~~~~lpC~H~Fh~~Cl~~Wl~~~~~~~~~CP~C 379 (589)
..+..|+||++.+.+++.++|||.||..||.+|+++.. ....||+|
T Consensus 18 ~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~-~~~~CP~C 63 (63)
T 2ysj_A 18 QEEVICPICLDILQKPVTIDCGHNFCLKCITQIGETSC-GFFKCPLC 63 (63)
T ss_dssp CCCCBCTTTCSBCSSCEECTTSSEECHHHHHHHHHHCS-SCCCCSCC
T ss_pred ccCCCCCcCCchhCCeEEeCCCCcchHHHHHHHHHcCC-CCCcCcCC
Confidence 35678999999999999999999999999999998521 15789998
No 28
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.96 E-value=3.7e-10 Score=89.43 Aligned_cols=49 Identities=24% Similarity=0.620 Sum_probs=41.3
Q ss_pred CCccccccc-ccccce----eeccCCcccHhHHHHHHhcCCCCCCCCcccccCCcCC
Q 007807 335 DDECAICRE-PMAKAK----KLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFVG 386 (589)
Q Consensus 335 ~~~C~IC~e-~~~~~~----~lpC~H~Fh~~Cl~~Wl~~~~~~~~~CP~CR~~~~~~ 386 (589)
+..|+||++ .+.++. .++|||.||..|+.+|+.++ ...||+||+++...
T Consensus 3 ~~~C~IC~~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~---~~~CP~Cr~~~~~~ 56 (65)
T 1g25_A 3 DQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRG---AGNCPECGTPLRKS 56 (65)
T ss_dssp TTCCSTTTTHHHHCSSCCEEECTTCCCEEHHHHHHHHHTT---SSSCTTTCCCCSSC
T ss_pred CCcCCcCCCCccCCCccCeecCCCCCHhHHHHHHHHHHcC---CCcCCCCCCccccc
Confidence 457999999 787773 57999999999999998764 57899999998654
No 29
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=98.96 E-value=3.1e-10 Score=96.11 Aligned_cols=50 Identities=26% Similarity=0.537 Sum_probs=43.2
Q ss_pred cCCCcccccccccccceeec-cCCcccHhHHHHHHhcCCCCCCCCcccccCCc
Q 007807 333 AYDDECAICREPMAKAKKLL-CNHLFHLACLRSWLDQGLNEMYSCPTCRKPLF 384 (589)
Q Consensus 333 ~~~~~C~IC~e~~~~~~~lp-C~H~Fh~~Cl~~Wl~~~~~~~~~CP~CR~~~~ 384 (589)
..+..|+||++.+.+|+.++ |||.||..||..|+.+.. ...||+||.++.
T Consensus 11 ~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~--~~~CP~Cr~~~~ 61 (92)
T 3ztg_A 11 PDELLCLICKDIMTDAVVIPCCGNSYCDECIRTALLESD--EHTCPTCHQNDV 61 (92)
T ss_dssp CTTTEETTTTEECSSCEECTTTCCEECHHHHHHHHHHCT--TCCCTTTCCSSC
T ss_pred CcCCCCCCCChhhcCceECCCCCCHHHHHHHHHHHHhcC--CCcCcCCCCcCC
Confidence 34568999999999999999 999999999999997531 369999999873
No 30
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=98.95 E-value=5.3e-10 Score=92.61 Aligned_cols=53 Identities=30% Similarity=0.605 Sum_probs=45.0
Q ss_pred CCCcccccccccccceeeccCCcccHhHHHHHHhcCC--CCCCCCcccccCCcCC
Q 007807 334 YDDECAICREPMAKAKKLLCNHLFHLACLRSWLDQGL--NEMYSCPTCRKPLFVG 386 (589)
Q Consensus 334 ~~~~C~IC~e~~~~~~~lpC~H~Fh~~Cl~~Wl~~~~--~~~~~CP~CR~~~~~~ 386 (589)
.+..|+||++.+.+++.++|||.||..|+..|+.+.. .....||+||..+...
T Consensus 18 ~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~ 72 (85)
T 2ecw_A 18 EEVTCPICLELLKEPVSADCNHSFCRACITLNYESNRNTDGKGNCPVCRVPYPFG 72 (85)
T ss_dssp TTTSCTTTCSCCSSCEECTTSCCBCHHHHHHHHHHSBCTTSCBCCTTTCCCCCTT
T ss_pred cCCCCcCCChhhCcceeCCCCCHHHHHHHHHHHHhccCCCCCCCCCCCCCcCCHH
Confidence 4568999999999999999999999999999998721 1147899999988754
No 31
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.95 E-value=5.6e-10 Score=92.45 Aligned_cols=54 Identities=30% Similarity=0.522 Sum_probs=45.1
Q ss_pred cCCCcccccccccccceeeccCCcccHhHHHHHHhcC--CCCCCCCcccccCCcCC
Q 007807 333 AYDDECAICREPMAKAKKLLCNHLFHLACLRSWLDQG--LNEMYSCPTCRKPLFVG 386 (589)
Q Consensus 333 ~~~~~C~IC~e~~~~~~~lpC~H~Fh~~Cl~~Wl~~~--~~~~~~CP~CR~~~~~~ 386 (589)
..+..|+||++.+.+++.++|||.||..|+..|+.+. ......||+||..+...
T Consensus 17 ~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~ 72 (85)
T 2ecv_A 17 KEEVTCPICLELLTQPLSLDCGHSFCQACLTANHKKSMLDKGESSCPVCRISYQPE 72 (85)
T ss_dssp CCCCCCTTTCSCCSSCBCCSSSCCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSCSS
T ss_pred cCCCCCCCCCcccCCceeCCCCCHHHHHHHHHHHHHhhcCCCCCcCCCCCCccCHH
Confidence 3467899999999999999999999999999999761 11147999999998753
No 32
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=98.93 E-value=4.4e-10 Score=98.20 Aligned_cols=50 Identities=22% Similarity=0.512 Sum_probs=44.9
Q ss_pred cCCCcccccccccccceee-ccCCcccHhHHHHHHhcCCCCCCCCcccccCCcCC
Q 007807 333 AYDDECAICREPMAKAKKL-LCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFVG 386 (589)
Q Consensus 333 ~~~~~C~IC~e~~~~~~~l-pC~H~Fh~~Cl~~Wl~~~~~~~~~CP~CR~~~~~~ 386 (589)
..+..|+||++.+.+++.+ +|||.||..|+..|+.. +..||+||..+...
T Consensus 13 ~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~----~~~CP~Cr~~~~~~ 63 (108)
T 2ckl_A 13 NPHLMCVLCGGYFIDATTIIECLHSFCKTCIVRYLET----SKYCPICDVQVHKT 63 (108)
T ss_dssp GGGTBCTTTSSBCSSEEEETTTCCEEEHHHHHHHHTS----CSBCTTTCCBSCSS
T ss_pred CCcCCCccCChHHhCcCEeCCCCChhhHHHHHHHHHh----CCcCcCCCcccccc
Confidence 3466899999999999998 99999999999999987 58999999998754
No 33
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=98.93 E-value=2.7e-10 Score=97.96 Aligned_cols=48 Identities=29% Similarity=0.549 Sum_probs=43.4
Q ss_pred CCCcccccccccccceee-ccCCcccHhHHHHHHhcCCCCCCCCcccccCCcC
Q 007807 334 YDDECAICREPMAKAKKL-LCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFV 385 (589)
Q Consensus 334 ~~~~C~IC~e~~~~~~~l-pC~H~Fh~~Cl~~Wl~~~~~~~~~CP~CR~~~~~ 385 (589)
.+..|+||++.+.+++.+ +|||.||..|+.+|+.. +..||+||..+..
T Consensus 21 ~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~----~~~CP~Cr~~~~~ 69 (99)
T 2y43_A 21 DLLRCGICFEYFNIAMIIPQCSHNYCSLCIRKFLSY----KTQCPTCCVTVTE 69 (99)
T ss_dssp HHTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHTT----CCBCTTTCCBCCG
T ss_pred CCCCcccCChhhCCcCEECCCCCHhhHHHHHHHHHC----CCCCCCCCCcCCh
Confidence 456899999999999888 89999999999999987 5899999998864
No 34
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=98.92 E-value=2e-10 Score=94.20 Aligned_cols=53 Identities=25% Similarity=0.486 Sum_probs=44.7
Q ss_pred CCCcccccccccccceeeccCCcccHhHHHHHHhcCC---CCCCCCcccccCCcCC
Q 007807 334 YDDECAICREPMAKAKKLLCNHLFHLACLRSWLDQGL---NEMYSCPTCRKPLFVG 386 (589)
Q Consensus 334 ~~~~C~IC~e~~~~~~~lpC~H~Fh~~Cl~~Wl~~~~---~~~~~CP~CR~~~~~~ 386 (589)
.+..|+||++.+.+++.++|||.||..|+.+|+.... .....||+||..+...
T Consensus 11 ~~~~C~IC~~~~~~p~~l~CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~~~ 66 (79)
T 2egp_A 11 EEVTCPICLELLTEPLSLDCGHSLCRACITVSNKEAVTSMGGKSSCPVCGISYSFE 66 (79)
T ss_dssp CCCEETTTTEECSSCCCCSSSCCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCCCSS
T ss_pred cCCCCcCCCcccCCeeECCCCCHHHHHHHHHHHHhcccCCCCCCcCCCCCCcCCHh
Confidence 4568999999999999999999999999999997621 1247899999998753
No 35
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.91 E-value=4.8e-10 Score=86.31 Aligned_cols=45 Identities=27% Similarity=0.807 Sum_probs=38.5
Q ss_pred CCCcccccccccccceeeccCCcccHhHHHHHHhcCCCCCCCCccc
Q 007807 334 YDDECAICREPMAKAKKLLCNHLFHLACLRSWLDQGLNEMYSCPTC 379 (589)
Q Consensus 334 ~~~~C~IC~e~~~~~~~lpC~H~Fh~~Cl~~Wl~~~~~~~~~CP~C 379 (589)
.+..|+||++.+.+++.++|||.||..|+.+|+.+. .....||+|
T Consensus 14 ~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~-~~~~~CP~C 58 (58)
T 2ecj_A 14 VEASCSVCLEYLKEPVIIECGHNFCKACITRWWEDL-ERDFPCPVC 58 (58)
T ss_dssp CCCBCSSSCCBCSSCCCCSSCCCCCHHHHHHHTTSS-CCSCCCSCC
T ss_pred cCCCCccCCcccCccEeCCCCCccCHHHHHHHHHhc-CCCCCCCCC
Confidence 456899999999999999999999999999996541 115899998
No 36
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=98.88 E-value=2.2e-10 Score=101.77 Aligned_cols=48 Identities=33% Similarity=0.731 Sum_probs=1.0
Q ss_pred CCCcccccccccccc------------------eeeccCCcccHhHHHHHHhcCCCCCCCCcccccCCcC
Q 007807 334 YDDECAICREPMAKA------------------KKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFV 385 (589)
Q Consensus 334 ~~~~C~IC~e~~~~~------------------~~lpC~H~Fh~~Cl~~Wl~~~~~~~~~CP~CR~~~~~ 385 (589)
.++.|+||++.+.++ ..++|+|.||..||.+|+.+ +.+||+||+++..
T Consensus 47 ~~d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H~FH~~CI~~Wl~~----~~~CP~Cr~~~~~ 112 (117)
T 4a0k_B 47 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKT----RQVCPLDNREWEF 112 (117)
T ss_dssp CC--------------------------------------------------------------------
T ss_pred CCCcCeECChhhcCcChhhhcccccccccccccccCCcCceEcHHHHHHHHHc----CCcCCCCCCeeee
Confidence 457899999999753 12489999999999999998 6899999998643
No 37
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=98.87 E-value=7e-10 Score=102.97 Aligned_cols=50 Identities=26% Similarity=0.518 Sum_probs=44.1
Q ss_pred CCCcccccccccccceeeccCCcccHhHHHHHHhcCCCCCCCCcccccCCcCC
Q 007807 334 YDDECAICREPMAKAKKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFVG 386 (589)
Q Consensus 334 ~~~~C~IC~e~~~~~~~lpC~H~Fh~~Cl~~Wl~~~~~~~~~CP~CR~~~~~~ 386 (589)
.+..|+||++.+.+|+.++|||.||..||..|+..+ ...||+||..+...
T Consensus 77 ~~~~C~IC~~~~~~pv~~~CgH~fC~~Ci~~~~~~~---~~~CP~Cr~~~~~~ 126 (150)
T 1z6u_A 77 QSFMCVCCQELVYQPVTTECFHNVCKDCLQRSFKAQ---VFSCPACRHDLGQN 126 (150)
T ss_dssp HHTBCTTTSSBCSSEEECTTSCEEEHHHHHHHHHTT---CCBCTTTCCBCCTT
T ss_pred cCCEeecCChhhcCCEEcCCCCchhHHHHHHHHHhC---CCcCCCCCccCCCC
Confidence 346899999999999999999999999999999873 35899999988753
No 38
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.85 E-value=1.4e-09 Score=95.19 Aligned_cols=51 Identities=27% Similarity=0.576 Sum_probs=43.4
Q ss_pred CCcccccccccccceeeccCCcccHhHHHHHHhcCCCCCCCCcccccCCcCC
Q 007807 335 DDECAICREPMAKAKKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFVG 386 (589)
Q Consensus 335 ~~~C~IC~e~~~~~~~lpC~H~Fh~~Cl~~Wl~~~~~~~~~CP~CR~~~~~~ 386 (589)
+..|+||++.+.+++.++|||.||..|+..|+..... ...||+||..+...
T Consensus 21 ~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~-~~~CP~Cr~~~~~~ 71 (112)
T 1jm7_A 21 ILECPICLELIKEPVSTKCDHIFCKFCMLKLLNQKKG-PSQCPLCKNDITKR 71 (112)
T ss_dssp HTSCSSSCCCCSSCCBCTTSCCCCSHHHHHHHHSSSS-SCCCTTTSCCCCTT
T ss_pred CCCCcccChhhcCeEECCCCCHHHHHHHHHHHHhCCC-CCCCcCCCCcCCHh
Confidence 3479999999999999999999999999999986311 25899999988754
No 39
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=98.85 E-value=2.4e-10 Score=101.01 Aligned_cols=48 Identities=29% Similarity=0.717 Sum_probs=43.0
Q ss_pred CCcccccccccccceeeccCCcccHhHHHHHHhcCCCCCCCCcccccCCcC
Q 007807 335 DDECAICREPMAKAKKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFV 385 (589)
Q Consensus 335 ~~~C~IC~e~~~~~~~lpC~H~Fh~~Cl~~Wl~~~~~~~~~CP~CR~~~~~ 385 (589)
+..|+||++.+.+|+.++|||.||..|+..|+.++ ...||+||..+..
T Consensus 15 ~~~C~iC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~---~~~CP~Cr~~~~~ 62 (115)
T 3l11_A 15 ECQCGICMEILVEPVTLPCNHTLCKPCFQSTVEKA---SLCCPFCRRRVSS 62 (115)
T ss_dssp HHBCTTTCSBCSSCEECTTSCEECHHHHCCCCCTT---TSBCTTTCCBCHH
T ss_pred CCCCccCCcccCceeEcCCCCHHhHHHHHHHHhHC---cCCCCCCCcccCc
Confidence 45799999999999999999999999999999764 5789999998864
No 40
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=98.85 E-value=1.3e-09 Score=97.92 Aligned_cols=50 Identities=34% Similarity=0.683 Sum_probs=44.4
Q ss_pred CCCcccccccccccc-------eeeccCCcccHhHHHHHHhcCCCCCCCCcccccCCcCCC
Q 007807 334 YDDECAICREPMAKA-------KKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFVGR 387 (589)
Q Consensus 334 ~~~~C~IC~e~~~~~-------~~lpC~H~Fh~~Cl~~Wl~~~~~~~~~CP~CR~~~~~~~ 387 (589)
++..|+||++.+.++ +.++|||.||..||.+|+++ +.+||+||+.+....
T Consensus 6 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~----~~~CP~Cr~~~~~~~ 62 (133)
T 4ap4_A 6 GTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN----ANTCPTCRKKINHKR 62 (133)
T ss_dssp CSCBCTTTCCBHHHHHHTTCCEEEETTCCEEEHHHHHHHHTT----CSBCTTTCCBCTTTC
T ss_pred CCCCCcccChhhhCccccccCeEecCCCChhhHHHHHHHHHh----CCCCCCCCCcCcccc
Confidence 456899999999888 88999999999999999987 579999999987653
No 41
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.83 E-value=1.9e-09 Score=89.40 Aligned_cols=52 Identities=25% Similarity=0.616 Sum_probs=42.0
Q ss_pred cCCCcccccccccc--cceeeccC-----CcccHhHHHHHHhcCCCCCCCCcccccCCcCC
Q 007807 333 AYDDECAICREPMA--KAKKLLCN-----HLFHLACLRSWLDQGLNEMYSCPTCRKPLFVG 386 (589)
Q Consensus 333 ~~~~~C~IC~e~~~--~~~~lpC~-----H~Fh~~Cl~~Wl~~~~~~~~~CP~CR~~~~~~ 386 (589)
..++.|.||+++++ ++..+||+ |.||..||++|+.... ..+||+||..+...
T Consensus 13 ~~~~~C~IC~~~~~~~~~l~~pC~C~Gs~h~fH~~Cl~~Wl~~~~--~~~CplCr~~~~~~ 71 (80)
T 2d8s_A 13 SSQDICRICHCEGDDESPLITPCHCTGSLHFVHQACLQQWIKSSD--TRCCELCKYEFIME 71 (80)
T ss_dssp TTSCCCSSSCCCCCSSSCEECSSSCCSSSCCEETTHHHHHHHHHC--CSBCSSSCCBCCCC
T ss_pred CCCCCCeEcCccccCCCeeEeccccCCcCCeeCHHHHHHHHhhCC--CCCCCCCCCeeecC
Confidence 34678999999885 35667997 9999999999998731 25999999998754
No 42
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=98.82 E-value=1.4e-09 Score=102.20 Aligned_cols=48 Identities=33% Similarity=0.672 Sum_probs=42.8
Q ss_pred CCcccccccccccceee-ccCCcccHhHHHHHHhcCCCCCCCCcccccCCcC
Q 007807 335 DDECAICREPMAKAKKL-LCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFV 385 (589)
Q Consensus 335 ~~~C~IC~e~~~~~~~l-pC~H~Fh~~Cl~~Wl~~~~~~~~~CP~CR~~~~~ 385 (589)
+..|+||++.+.+++.+ +|||.||..|+..|+..+ ...||+||..+..
T Consensus 54 ~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~---~~~CP~Cr~~~~~ 102 (165)
T 2ckl_B 54 ELMCPICLDMLKNTMTTKECLHRFCADCIITALRSG---NKECPTCRKKLVS 102 (165)
T ss_dssp HHBCTTTSSBCSSEEEETTTCCEEEHHHHHHHHHTT---CCBCTTTCCBCCS
T ss_pred CCCCcccChHhhCcCEeCCCCChhHHHHHHHHHHhC---cCCCCCCCCcCCC
Confidence 34899999999999888 999999999999999864 5789999998854
No 43
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=98.82 E-value=1e-09 Score=97.10 Aligned_cols=50 Identities=32% Similarity=0.633 Sum_probs=44.5
Q ss_pred CCCcccccccccccceeeccCCcccHhHHHHHHhcCCCCCCCCcccccCCcCC
Q 007807 334 YDDECAICREPMAKAKKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFVG 386 (589)
Q Consensus 334 ~~~~C~IC~e~~~~~~~lpC~H~Fh~~Cl~~Wl~~~~~~~~~CP~CR~~~~~~ 386 (589)
.+..|+||++.+.+|+.++|||.||..|+.+|+... ...||+||.++...
T Consensus 22 ~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~---~~~CP~Cr~~~~~~ 71 (116)
T 1rmd_A 22 KSISCQICEHILADPVETSCKHLFCRICILRCLKVM---GSYCPSCRYPCFPT 71 (116)
T ss_dssp HHTBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHT---CSBCTTTCCBCCGG
T ss_pred CCCCCCCCCcHhcCcEEcCCCCcccHHHHHHHHhHC---cCcCCCCCCCCCHh
Confidence 456899999999999999999999999999999873 47899999998653
No 44
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=98.81 E-value=2e-09 Score=90.21 Aligned_cols=48 Identities=13% Similarity=0.028 Sum_probs=43.7
Q ss_pred CCCcccccccccccceeeccCCcccHhHHHHHHhcCCCCCCCCcccccCCcC
Q 007807 334 YDDECAICREPMAKAKKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFV 385 (589)
Q Consensus 334 ~~~~C~IC~e~~~~~~~lpC~H~Fh~~Cl~~Wl~~~~~~~~~CP~CR~~~~~ 385 (589)
.+..|+||++.|.+|+.++|||+|++.||..|+.. +.+||.||.++..
T Consensus 13 ~~~~CpI~~~~m~dPV~~~cGhtf~r~~I~~~l~~----~~~cP~~~~~l~~ 60 (85)
T 2kr4_A 13 DEFRDPLMDTLMTDPVRLPSGTVMDRSIILRHLLN----SPTDPFNRQMLTE 60 (85)
T ss_dssp TTTBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHH----CSBCTTTCCBCCG
T ss_pred hheECcccCchhcCCeECCCCCEECHHHHHHHHhc----CCCCCCCcCCCCh
Confidence 45689999999999999999999999999999987 5899999998764
No 45
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.79 E-value=6.3e-09 Score=105.05 Aligned_cols=49 Identities=16% Similarity=-0.026 Sum_probs=43.4
Q ss_pred CCCcccccccccccceeeccCCcccHhHHHHHHhcCCCCCCCCcccccCCcC
Q 007807 334 YDDECAICREPMAKAKKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFV 385 (589)
Q Consensus 334 ~~~~C~IC~e~~~~~~~lpC~H~Fh~~Cl~~Wl~~~~~~~~~CP~CR~~~~~ 385 (589)
.+..|+||++.|.+|+.+||||+||+.||..|+..+ +.+||+||.++..
T Consensus 207 ~~~~c~i~~~~~~dPv~~~~gh~f~~~~i~~~~~~~---~~~cP~~~~~~~~ 255 (281)
T 2c2l_A 207 DYLCGKISFELMREPCITPSGITYDRKDIEEHLQRV---GHFNPVTRSPLTQ 255 (281)
T ss_dssp STTBCTTTCSBCSSEEECSSCCEEETTHHHHHHHHT---CSSCTTTCCCCCG
T ss_pred cccCCcCcCCHhcCCeECCCCCEECHHHHHHHHHHC---CCCCcCCCCCCch
Confidence 456899999999999999999999999999999874 3559999998864
No 46
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=98.78 E-value=1.8e-09 Score=95.98 Aligned_cols=49 Identities=27% Similarity=0.493 Sum_probs=43.5
Q ss_pred CCCcccccccccccceeeccCCcccHhHHHHHHhcCCCCCCCCcccccCCcC
Q 007807 334 YDDECAICREPMAKAKKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFV 385 (589)
Q Consensus 334 ~~~~C~IC~e~~~~~~~lpC~H~Fh~~Cl~~Wl~~~~~~~~~CP~CR~~~~~ 385 (589)
.+..|+||++.+.+++.++|||.||..|+.+|+.++ ...||+||.++..
T Consensus 17 ~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~---~~~CP~Cr~~~~~ 65 (118)
T 3hct_A 17 SKYECPICLMALREAVQTPCGHRFCKACIIKSIRDA---GHKCPVDNEILLE 65 (118)
T ss_dssp GGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHH---CSBCTTTCCBCCG
T ss_pred CCCCCCcCChhhcCeEECCcCChhhHHHHHHHHhhC---CCCCCCCCCCcCH
Confidence 445899999999999999999999999999999873 3499999998865
No 47
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=98.78 E-value=2.3e-09 Score=92.74 Aligned_cols=48 Identities=13% Similarity=0.052 Sum_probs=43.7
Q ss_pred CCCcccccccccccceeeccCCcccHhHHHHHHhcCCCCCCCCcccccCCcC
Q 007807 334 YDDECAICREPMAKAKKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFV 385 (589)
Q Consensus 334 ~~~~C~IC~e~~~~~~~lpC~H~Fh~~Cl~~Wl~~~~~~~~~CP~CR~~~~~ 385 (589)
.+..|+||++.|.+|+.++|||+||+.||..|+.. +.+||.||.++..
T Consensus 28 ~~~~CpI~~~~m~dPV~~~cGhtf~r~~I~~~l~~----~~~cP~~~~~l~~ 75 (100)
T 2kre_A 28 DEFRDPLMDTLMTDPVRLPSGTIMDRSIILRHLLN----SPTDPFNRQTLTE 75 (100)
T ss_dssp TTTBCTTTCSBCSSEEEETTTEEEEHHHHHHHTTS----CSBCSSSCCBCCT
T ss_pred HhhCCcCccCcccCCeECCCCCEEchHHHHHHHHc----CCCCCCCCCCCCh
Confidence 35689999999999999999999999999999986 5899999998764
No 48
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=98.77 E-value=5.4e-09 Score=86.24 Aligned_cols=50 Identities=26% Similarity=0.507 Sum_probs=40.3
Q ss_pred CCCcccccccccc--cceeec--cCCcccHhHHHHHHhcCCCCCCCCcccccCCcCC
Q 007807 334 YDDECAICREPMA--KAKKLL--CNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFVG 386 (589)
Q Consensus 334 ~~~~C~IC~e~~~--~~~~lp--C~H~Fh~~Cl~~Wl~~~~~~~~~CP~CR~~~~~~ 386 (589)
.+.+|+||+|++. +++.+| |||.||..|+..+++.. ...||.||+++...
T Consensus 10 ~~~~CpICle~~~~~d~~~~p~~CGH~fC~~Cl~~~~~~~---~~~CP~CR~~~~~~ 63 (78)
T 1e4u_A 10 DPVECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTDE---NGLCPACRKPYPED 63 (78)
T ss_dssp CCCBCTTTCCBCCTTTTTCCSSTTSCCCCHHHHHHHTTSS---CSBCTTTCCBCSSC
T ss_pred cCCcCCccCccCccccccccccCCCCCcCHHHHHHHHhcC---CCCCCCCCCccCCC
Confidence 4568999999985 344555 99999999999987553 57999999998764
No 49
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=98.75 E-value=3.5e-09 Score=91.19 Aligned_cols=48 Identities=17% Similarity=0.038 Sum_probs=43.7
Q ss_pred CCCcccccccccccceeeccC-CcccHhHHHHHHhcCCCCCCCCcccccCCcC
Q 007807 334 YDDECAICREPMAKAKKLLCN-HLFHLACLRSWLDQGLNEMYSCPTCRKPLFV 385 (589)
Q Consensus 334 ~~~~C~IC~e~~~~~~~lpC~-H~Fh~~Cl~~Wl~~~~~~~~~CP~CR~~~~~ 385 (589)
.+..|+||++.|.+|+.++|| |+||+.||..|+.. +.+||+||.++..
T Consensus 21 ~~~~CpI~~~~m~dPV~~~cG~htf~r~cI~~~l~~----~~~cP~~~~~l~~ 69 (98)
T 1wgm_A 21 DEFLDPIMSTLMCDPVVLPSSRVTVDRSTIARHLLS----DQTDPFNRSPLTM 69 (98)
T ss_dssp TTTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHTTT----SCBCTTTCSBCCT
T ss_pred HhcCCcCccccccCCeECCCCCeEECHHHHHHHHHh----CCCCCCCCCCCCh
Confidence 456899999999999999999 99999999999987 5799999998764
No 50
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=98.75 E-value=2.9e-09 Score=95.54 Aligned_cols=50 Identities=32% Similarity=0.659 Sum_probs=44.1
Q ss_pred cCCCcccccccccccc-------eeeccCCcccHhHHHHHHhcCCCCCCCCcccccCCcCC
Q 007807 333 AYDDECAICREPMAKA-------KKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFVG 386 (589)
Q Consensus 333 ~~~~~C~IC~e~~~~~-------~~lpC~H~Fh~~Cl~~Wl~~~~~~~~~CP~CR~~~~~~ 386 (589)
+.+..|+||++.+.++ +.++|||.||..|+.+|+++ ..+||+||.++..+
T Consensus 70 ~~~~~C~iC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~----~~~CP~Cr~~~~~~ 126 (133)
T 4ap4_A 70 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN----ANTCPTCRKKINHK 126 (133)
T ss_dssp SSSCBCTTTCCBHHHHHHTTCCEEEETTSBEEEHHHHHHHHHH----CSBCTTTCCBCCGG
T ss_pred CCCCCCCCCCCccccccccCcceEeCCCCChhhHHHHHHHHHc----CCCCCCCCCcCChh
Confidence 3467899999999876 77899999999999999998 68999999998754
No 51
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.73 E-value=6.8e-09 Score=84.60 Aligned_cols=52 Identities=19% Similarity=0.478 Sum_probs=42.3
Q ss_pred cCCCcccccccccccceee-ccCCcccHhHHHHHHhcCCCCCCCCcccccCCcCC
Q 007807 333 AYDDECAICREPMAKAKKL-LCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFVG 386 (589)
Q Consensus 333 ~~~~~C~IC~e~~~~~~~l-pC~H~Fh~~Cl~~Wl~~~~~~~~~CP~CR~~~~~~ 386 (589)
+..+.|+||++.+...++- .|+|.||..||.+|++... ..+||.||.++...
T Consensus 13 ~~i~~C~IC~~~i~~g~~C~~C~h~fH~~Ci~kWl~~~~--~~~CP~Cr~~w~~~ 65 (74)
T 2ct0_A 13 DAVKICNICHSLLIQGQSCETCGIRMHLPCVAKYFQSNA--EPRCPHCNDYWPHE 65 (74)
T ss_dssp SSSCBCSSSCCBCSSSEECSSSCCEECHHHHHHHSTTCS--SCCCTTTCSCCCSC
T ss_pred CCCCcCcchhhHcccCCccCCCCchhhHHHHHHHHHhcC--CCCCCCCcCcCCCC
Confidence 3456899999999866544 7999999999999997621 27999999988754
No 52
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.73 E-value=2.4e-09 Score=82.45 Aligned_cols=46 Identities=28% Similarity=0.554 Sum_probs=40.1
Q ss_pred CCCcccccccccccceeeccCCcccHhHHHHHHhcCCCCCCCCcccccCCcCC
Q 007807 334 YDDECAICREPMAKAKKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFVG 386 (589)
Q Consensus 334 ~~~~C~IC~e~~~~~~~lpC~H~Fh~~Cl~~Wl~~~~~~~~~CP~CR~~~~~~ 386 (589)
.+..|+||++.+.+++.++|||.||..|+.+| ...||+||+.+...
T Consensus 5 ~~~~C~IC~~~~~~p~~l~CgH~fC~~Ci~~~-------~~~CP~Cr~~~~~~ 50 (56)
T 1bor_A 5 QFLRCQQCQAEAKCPKLLPCLHTLCSGCLEAS-------GMQCPICQAPWPLG 50 (56)
T ss_dssp CCSSCSSSCSSCBCCSCSTTSCCSBTTTCSSS-------SSSCSSCCSSSSCC
T ss_pred cCCCceEeCCccCCeEEcCCCCcccHHHHccC-------CCCCCcCCcEeecC
Confidence 45689999999999999999999999999772 47899999988653
No 53
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=98.72 E-value=5.9e-09 Score=82.58 Aligned_cols=47 Identities=23% Similarity=0.556 Sum_probs=41.7
Q ss_pred CCCcccccccccccceee--ccCCc-ccHhHHHHHHhcCCCCCCCCcccccCCc
Q 007807 334 YDDECAICREPMAKAKKL--LCNHL-FHLACLRSWLDQGLNEMYSCPTCRKPLF 384 (589)
Q Consensus 334 ~~~~C~IC~e~~~~~~~l--pC~H~-Fh~~Cl~~Wl~~~~~~~~~CP~CR~~~~ 384 (589)
.+..|+||++...+++.+ ||||. ||..|+..|.++ +..||+||+++.
T Consensus 7 ~~~~C~IC~~~~~~~~~~~~pCgH~~~C~~C~~~~~~~----~~~CPiCR~~i~ 56 (64)
T 2vje_A 7 AIEPCVICQGRPKNGCIVHGKTGHLMACFTCAKKLKKR----NKPCPVCRQPIQ 56 (64)
T ss_dssp GGSCCTTTSSSCSCEEEEETTEEEEEECHHHHHHHHHT----TCCCTTTCCCCC
T ss_pred CcCCCCcCCCCCCCEEEECCCCCChhhHHHHHHHHHHc----CCcCCCcCcchh
Confidence 456899999999998877 99999 899999999987 589999999875
No 54
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=98.71 E-value=6e-09 Score=110.06 Aligned_cols=49 Identities=33% Similarity=0.611 Sum_probs=43.6
Q ss_pred CCcccccccccccceeeccCCcccHhHHHHHHhcCCCCCCCCcccccCCcCC
Q 007807 335 DDECAICREPMAKAKKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFVG 386 (589)
Q Consensus 335 ~~~C~IC~e~~~~~~~lpC~H~Fh~~Cl~~Wl~~~~~~~~~CP~CR~~~~~~ 386 (589)
+..|+||++.+.+++.+||||.||..|+..|+.+. ...||+||.++...
T Consensus 332 ~~~C~ICle~~~~pv~lpCGH~FC~~Ci~~wl~~~---~~~CP~CR~~i~~~ 380 (389)
T 2y1n_A 332 FQLCKICAENDKDVKIEPCGHLMCTSCLTSWQESE---GQGCPFCRCEIKGT 380 (389)
T ss_dssp SSBCTTTSSSBCCEEEETTCCEECHHHHHHHHHHT---CSBCTTTCCBCCEE
T ss_pred CCCCCccCcCCCCeEEeCCCChhhHHHHHHHHhcC---CCCCCCCCCccCCc
Confidence 36899999999999999999999999999999842 58999999988653
No 55
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=98.70 E-value=6.1e-09 Score=82.23 Aligned_cols=48 Identities=23% Similarity=0.505 Sum_probs=42.0
Q ss_pred cCCCcccccccccccceee--ccCCc-ccHhHHHHHHhcCCCCCCCCcccccCCc
Q 007807 333 AYDDECAICREPMAKAKKL--LCNHL-FHLACLRSWLDQGLNEMYSCPTCRKPLF 384 (589)
Q Consensus 333 ~~~~~C~IC~e~~~~~~~l--pC~H~-Fh~~Cl~~Wl~~~~~~~~~CP~CR~~~~ 384 (589)
+.+..|.||++...++..+ ||||. ||..|...|.++ +..||+||+++.
T Consensus 5 ~~~~~C~IC~~~~~~~~~~~~pCgH~~~C~~C~~~~~~~----~~~CPiCR~~i~ 55 (63)
T 2vje_B 5 NLLKPCSLCEKRPRDGNIIHGRTGHLVTCFHCARRLKKA----GASCPICKKEIQ 55 (63)
T ss_dssp GGGSBCTTTSSSBSCEEEEETTEEEEEECHHHHHHHHHT----TCBCTTTCCBCC
T ss_pred CcCCCCcccCCcCCCeEEEecCCCCHhHHHHHHHHHHHh----CCcCCCcCchhh
Confidence 3456899999999888777 99998 999999999877 579999999875
No 56
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=98.69 E-value=2.6e-09 Score=98.12 Aligned_cols=50 Identities=24% Similarity=0.510 Sum_probs=43.7
Q ss_pred cCCCcccccccccccceeeccCCcccHhHHHHHHhcCCCCCCCCcccccCCcC
Q 007807 333 AYDDECAICREPMAKAKKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFV 385 (589)
Q Consensus 333 ~~~~~C~IC~e~~~~~~~lpC~H~Fh~~Cl~~Wl~~~~~~~~~CP~CR~~~~~ 385 (589)
+.+..|+||++.+.+|+.++|||.||..||.+|+.++ ...||+||.++..
T Consensus 29 ~~~~~C~IC~~~~~~pv~~~CgH~FC~~Ci~~~~~~~---~~~CP~Cr~~~~~ 78 (141)
T 3knv_A 29 EAKYLCSACRNVLRRPFQAQCGHRYCSFCLASILSSG---PQNCAACVHEGIY 78 (141)
T ss_dssp CGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHGGGS---CEECHHHHHTTCC
T ss_pred CcCcCCCCCChhhcCcEECCCCCccCHHHHHHHHhcC---CCCCCCCCCcccc
Confidence 3456899999999999999999999999999999863 4589999998643
No 57
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.60 E-value=8e-09 Score=91.56 Aligned_cols=46 Identities=24% Similarity=0.648 Sum_probs=41.1
Q ss_pred CCCcccccccccccceee-ccCCcccHhHHHHHHhcCCCCCCCCcccccCCcC
Q 007807 334 YDDECAICREPMAKAKKL-LCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFV 385 (589)
Q Consensus 334 ~~~~C~IC~e~~~~~~~l-pC~H~Fh~~Cl~~Wl~~~~~~~~~CP~CR~~~~~ 385 (589)
.+..|+||++.+.+|+.+ +|||.||..||..|+. ..||+||..+..
T Consensus 21 ~~~~C~IC~~~~~~pv~~~~CgH~fC~~Ci~~~~~------~~CP~Cr~~~~~ 67 (117)
T 1jm7_B 21 KLLRCSRCTNILREPVCLGGCEHIFCSNCVSDCIG------TGCPVCYTPAWI 67 (117)
T ss_dssp HTTSCSSSCSCCSSCBCCCSSSCCBCTTTGGGGTT------TBCSSSCCBCSC
T ss_pred hCCCCCCCChHhhCccEeCCCCCHHHHHHHHHHhc------CCCcCCCCcCcc
Confidence 356899999999999999 9999999999999986 489999998753
No 58
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=98.58 E-value=2.2e-08 Score=95.27 Aligned_cols=48 Identities=17% Similarity=-0.017 Sum_probs=42.6
Q ss_pred CCcccccccccccceeeccCCcccHhHHHHHHhcCCCCCCCCcccccCCcC
Q 007807 335 DDECAICREPMAKAKKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFV 385 (589)
Q Consensus 335 ~~~C~IC~e~~~~~~~lpC~H~Fh~~Cl~~Wl~~~~~~~~~CP~CR~~~~~ 385 (589)
+..|+||++.|.+|+.+||||+||+.||..|+..+ +.+||+||.++..
T Consensus 106 ~f~CPI~~elm~DPV~~~~Ghtfer~~I~~~l~~~---~~tcP~t~~~l~~ 153 (179)
T 2f42_A 106 YLCGKISFELMREPCITPSGITYDRKDIEEHLQRV---GHFDPVTRSPLTQ 153 (179)
T ss_dssp GGBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHT---CSBCTTTCCBCCG
T ss_pred hhcccCccccCCCCeECCCCCEECHHHHHHHHHhC---CCCCCCCcCCCCh
Confidence 45799999999999999999999999999999873 2479999998764
No 59
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=98.55 E-value=1.3e-08 Score=82.86 Aligned_cols=44 Identities=23% Similarity=0.489 Sum_probs=39.0
Q ss_pred CCCcccccccccccceeeccCCc-ccHhHHHHHHhcCCCCCCCCcccccCCcC
Q 007807 334 YDDECAICREPMAKAKKLLCNHL-FHLACLRSWLDQGLNEMYSCPTCRKPLFV 385 (589)
Q Consensus 334 ~~~~C~IC~e~~~~~~~lpC~H~-Fh~~Cl~~Wl~~~~~~~~~CP~CR~~~~~ 385 (589)
.+..|+||++.+.+++.+||||. ||..|+..| ..||+||.++..
T Consensus 23 ~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~--------~~CP~Cr~~i~~ 67 (74)
T 4ic3_A 23 EEKLCKICMDRNIAIVFVPCGHLVTCKQCAEAV--------DKCPMCYTVITF 67 (74)
T ss_dssp HHTBCTTTSSSBCCEEEETTCCBCCCHHHHTTC--------SBCTTTCCBCSE
T ss_pred cCCCCCCCCCCCCCEEEcCCCChhHHHHhhhcC--------ccCCCcCcCccC
Confidence 34689999999999999999999 999999877 489999998764
No 60
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.54 E-value=2.7e-08 Score=84.82 Aligned_cols=50 Identities=22% Similarity=0.462 Sum_probs=41.2
Q ss_pred CCcccccccccccceeec-cCCcccHhHHHHHHhcC--CCCCCCCcc--cccC-Cc
Q 007807 335 DDECAICREPMAKAKKLL-CNHLFHLACLRSWLDQG--LNEMYSCPT--CRKP-LF 384 (589)
Q Consensus 335 ~~~C~IC~e~~~~~~~lp-C~H~Fh~~Cl~~Wl~~~--~~~~~~CP~--CR~~-~~ 384 (589)
+..|+||++.|.+|+.++ |||+|++.||..|+.++ .....+||+ |+.. +.
T Consensus 7 ~~~CPI~~~~~~dPV~~~~cGh~f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~~l~ 62 (94)
T 2yu4_A 7 GFTCPITKEEMKKPVKNKVCGHTYEEDAIVRMIESRQKRKKKAYCPQIGCSHTDIR 62 (94)
T ss_dssp CCBCTTTCSBCSSEEEESSSCCEEEHHHHHHHHHHHHTTTCCBCCCSTTCCCCCBC
T ss_pred EeECcCcCchhcCCEEcCCCCCeecHHHHHHHHHHccCcCCCCCCCcCcCcccccC
Confidence 457999999999999996 99999999999999762 011359999 9866 44
No 61
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=98.48 E-value=4.2e-08 Score=92.50 Aligned_cols=50 Identities=26% Similarity=0.486 Sum_probs=43.8
Q ss_pred CCCcccccccccccceeeccCCcccHhHHHHHHhcCCCCCCCCcccccCCcCC
Q 007807 334 YDDECAICREPMAKAKKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFVG 386 (589)
Q Consensus 334 ~~~~C~IC~e~~~~~~~lpC~H~Fh~~Cl~~Wl~~~~~~~~~CP~CR~~~~~~ 386 (589)
.+..|+||++.+.+|+.++|||.||..|+.+|+..+ ...||+||..+...
T Consensus 17 ~~~~C~IC~~~~~~pv~~~CgH~fC~~Ci~~~~~~~---~~~CP~Cr~~~~~~ 66 (170)
T 3hcs_A 17 SKYECPICLMALREAVQTPCGHRFCKACIIKSIRDA---GHKCPVDNEILLEN 66 (170)
T ss_dssp GGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHH---CSBCTTTCCBCCGG
T ss_pred CCCCCCCCChhhcCcEECCCCCHHHHHHHHHHHHhC---CCCCCCCccCcchh
Confidence 345899999999999999999999999999999863 35999999988653
No 62
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.42 E-value=1.3e-07 Score=75.75 Aligned_cols=45 Identities=22% Similarity=0.604 Sum_probs=39.4
Q ss_pred cCCCcccccccccccceeeccCCc-ccHhHHHHHHhcCCCCCCCCcccccCCcC
Q 007807 333 AYDDECAICREPMAKAKKLLCNHL-FHLACLRSWLDQGLNEMYSCPTCRKPLFV 385 (589)
Q Consensus 333 ~~~~~C~IC~e~~~~~~~lpC~H~-Fh~~Cl~~Wl~~~~~~~~~CP~CR~~~~~ 385 (589)
+.+..|.||++...+++.+||||. ||..|+.. ...||+||..+..
T Consensus 13 ~~~~~C~IC~~~~~~~v~~pCgH~~~C~~C~~~--------~~~CP~CR~~i~~ 58 (68)
T 2ea5_A 13 ENSKDCVVCQNGTVNWVLLPCRHTCLCDGCVKY--------FQQCPMCRQFVQE 58 (68)
T ss_dssp CCSSCCSSSSSSCCCCEETTTTBCCSCTTHHHH--------CSSCTTTCCCCCC
T ss_pred CCCCCCCCcCcCCCCEEEECCCChhhhHHHHhc--------CCCCCCCCcchhc
Confidence 456789999999999999999999 99999973 3799999998865
No 63
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.42 E-value=1e-07 Score=77.58 Aligned_cols=43 Identities=23% Similarity=0.554 Sum_probs=37.8
Q ss_pred CCcccccccccccceeeccCCc-ccHhHHHHHHhcCCCCCCCCcccccCCcC
Q 007807 335 DDECAICREPMAKAKKLLCNHL-FHLACLRSWLDQGLNEMYSCPTCRKPLFV 385 (589)
Q Consensus 335 ~~~C~IC~e~~~~~~~lpC~H~-Fh~~Cl~~Wl~~~~~~~~~CP~CR~~~~~ 385 (589)
+..|+||++.+.+++.+||||. ||..|+.. ...||+||.++..
T Consensus 25 ~~~C~IC~~~~~~~~~~pCgH~~~C~~C~~~--------~~~CP~Cr~~i~~ 68 (75)
T 2ecg_A 25 EKLCKICMDRNIAIVFVPCGHLVTCKQCAEA--------VDKCPMCYTVITF 68 (75)
T ss_dssp HHSCSSSCSSCCCBCCSSSCCCCBCHHHHHH--------CSBCTTTCCBCCC
T ss_pred CCCCCcCCCCCCCEEEecCCCHHHHHHHhhC--------CCCCccCCceecC
Confidence 4579999999999999999999 99999953 3789999998864
No 64
>2ekf_A Ancient ubiquitous protein 1; CUE, ubiquitin ligase complex, ubiquitin-conjugating enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.32 E-value=2.8e-07 Score=71.39 Aligned_cols=36 Identities=31% Similarity=0.445 Sum_probs=32.7
Q ss_pred cccccchhhHhHHHHHHHHHHhcCCCchHHHHHHHh
Q 007807 537 TSRSANENIANILAMAETVREVLPHMPEDLIFQVCL 572 (589)
Q Consensus 537 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 572 (589)
++|+++.+.+|+.+|||+|+||+||||.+.|.+||.
T Consensus 2 ~~~~~~~~~~ql~~mv~~V~~mfP~vp~~~I~~DL~ 37 (61)
T 2ekf_A 2 SSGSSGSPDVQLATLAQRVKEVLPHVPLGVIQRDLA 37 (61)
T ss_dssp CCSSSCCCCCCHHHHHHHHHHHCSSSCHHHHHHHHH
T ss_pred CCCCCCCccHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 456777788999999999999999999999999995
No 65
>2ejs_A Autocrine motility factor receptor, isoform 2; CUE, ubiquitin ligase complex, ubiquitin-conjugating enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.30 E-value=3.7e-07 Score=70.09 Aligned_cols=36 Identities=28% Similarity=0.454 Sum_probs=32.6
Q ss_pred cccccchhhHhHHHHHHHHHHhcCCCchHHHHHHHh
Q 007807 537 TSRSANENIANILAMAETVREVLPHMPEDLIFQVCL 572 (589)
Q Consensus 537 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 572 (589)
.+|.++.+.+|+.+|||+|+||+||+|.+.|.+||.
T Consensus 2 ~~~~~~~~~~q~~~mv~~V~~mfP~vp~~~I~~DL~ 37 (58)
T 2ejs_A 2 SSGSSGASNSQLNAMAHQIQEMFPQVPYHLVLQDLQ 37 (58)
T ss_dssp CCCCSSCCCCHHHHHHHHHHHHCCSSCHHHHHHHHH
T ss_pred CCCcCCcchHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 455677789999999999999999999999999995
No 66
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=98.24 E-value=3.2e-07 Score=94.42 Aligned_cols=52 Identities=23% Similarity=0.528 Sum_probs=39.0
Q ss_pred CCCccccccccccc----ce----eeccCCcccHhHHHHHHhcCCC-------CCCCCcccccCCcC
Q 007807 334 YDDECAICREPMAK----AK----KLLCNHLFHLACLRSWLDQGLN-------EMYSCPTCRKPLFV 385 (589)
Q Consensus 334 ~~~~C~IC~e~~~~----~~----~lpC~H~Fh~~Cl~~Wl~~~~~-------~~~~CP~CR~~~~~ 385 (589)
...+|+||++.+.+ |. ..+|+|.||..||.+|++.... -..+||.||+++..
T Consensus 307 ~~~ECaICys~~l~~g~lPdk~C~n~~C~h~FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pIs~ 373 (381)
T 3k1l_B 307 EELRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKLST 373 (381)
T ss_dssp SCCSCSSSCCSSCTTCCCCCBCCSCTTCCCCBCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEEEG
T ss_pred CCccCcccceeecCCCCCccccccCCccCCccchHHHHHHHHhCCCccccccccCCCCCCCCCcCCc
Confidence 45689999998876 21 2379999999999999976210 01479999998764
No 67
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=98.23 E-value=2.4e-07 Score=76.43 Aligned_cols=43 Identities=26% Similarity=0.506 Sum_probs=37.9
Q ss_pred CCcccccccccccceeeccCCc-ccHhHHHHHHhcCCCCCCCCcccccCCcC
Q 007807 335 DDECAICREPMAKAKKLLCNHL-FHLACLRSWLDQGLNEMYSCPTCRKPLFV 385 (589)
Q Consensus 335 ~~~C~IC~e~~~~~~~lpC~H~-Fh~~Cl~~Wl~~~~~~~~~CP~CR~~~~~ 385 (589)
+..|+||++...+++.+||||. ||..|+..| ..||+||.++..
T Consensus 18 ~~~C~IC~~~~~~~v~~pCgH~~~C~~C~~~~--------~~CP~Cr~~i~~ 61 (79)
T 2yho_A 18 AMLCMVCCEEEINSTFCPCGHTVCCESCAAQL--------QSCPVCRSRVEH 61 (79)
T ss_dssp HTBCTTTSSSBCCEEEETTCBCCBCHHHHTTC--------SBCTTTCCBCCE
T ss_pred CCEeEEeCcccCcEEEECCCCHHHHHHHHHhc--------CcCCCCCchhhC
Confidence 4589999999999999999999 999998654 489999998864
No 68
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=98.22 E-value=4.7e-07 Score=70.96 Aligned_cols=47 Identities=17% Similarity=0.246 Sum_probs=42.6
Q ss_pred Ccccccccccccceee-ccCCcccHhHHHHHHhcCCCCCCCCcccccCCcCC
Q 007807 336 DECAICREPMAKAKKL-LCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFVG 386 (589)
Q Consensus 336 ~~C~IC~e~~~~~~~l-pC~H~Fh~~Cl~~Wl~~~~~~~~~CP~CR~~~~~~ 386 (589)
..|+||++.|.+|+.+ +|||+|.+.||.+|+++ +.+||+++.++...
T Consensus 4 ~~CpIs~~~m~dPV~~~~sG~~yer~~I~~~l~~----~~~cP~t~~~L~~~ 51 (61)
T 2bay_A 4 MLCAISGKVPRRPVLSPKSRTIFEKSLLEQYVKD----TGNDPITNEPLSIE 51 (61)
T ss_dssp CCCTTTCSCCSSEEEETTTTEEEEHHHHHHHHHH----HSBCTTTCCBCCGG
T ss_pred EEecCCCCCCCCCEEeCCCCcEEcHHHHHHHHHh----CCCCcCCcCCCChh
Confidence 4799999999999999 89999999999999987 46799999988654
No 69
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=98.19 E-value=7.4e-07 Score=88.99 Aligned_cols=50 Identities=22% Similarity=0.499 Sum_probs=42.4
Q ss_pred CCcccccccccccceee-ccCCcccHhHHHHHHhcCCCCCCCCcc--cccCCcCC
Q 007807 335 DDECAICREPMAKAKKL-LCNHLFHLACLRSWLDQGLNEMYSCPT--CRKPLFVG 386 (589)
Q Consensus 335 ~~~C~IC~e~~~~~~~l-pC~H~Fh~~Cl~~Wl~~~~~~~~~CP~--CR~~~~~~ 386 (589)
+..|+||++.|.+|++. .|||+||+.||.+|++.+ ....||+ ||+.+...
T Consensus 181 el~CPIcl~~f~DPVts~~CGHsFcR~cI~~~~~~~--~~~~CPvtGCr~~l~~~ 233 (267)
T 3htk_C 181 ELTCPITCKPYEAPLISRKCNHVFDRDGIQNYLQGY--TTRDCPQAACSQVVSMR 233 (267)
T ss_dssp CSBCTTTSSBCSSEEEESSSCCEEEHHHHHHHSTTC--SCEECSGGGCSCEECGG
T ss_pred eeECcCccCcccCCeeeCCCCCcccHHHHHHHHHhC--CCCCCCcccccCcCchh
Confidence 45899999999999985 999999999999999763 1368999 99977543
No 70
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=98.15 E-value=1e-06 Score=68.79 Aligned_cols=49 Identities=24% Similarity=0.504 Sum_probs=39.3
Q ss_pred CCCcccccccccccceeeccC--C---cccHhHHHHHHhcCCCCCCCCcccccCCc
Q 007807 334 YDDECAICREPMAKAKKLLCN--H---LFHLACLRSWLDQGLNEMYSCPTCRKPLF 384 (589)
Q Consensus 334 ~~~~C~IC~e~~~~~~~lpC~--H---~Fh~~Cl~~Wl~~~~~~~~~CP~CR~~~~ 384 (589)
.+..|.||+++..++...||. | .||..||.+|+.... +.+||+||..+.
T Consensus 5 ~~~~CrIC~~~~~~~l~~PC~C~gs~~~~H~~Cl~~W~~~~~--~~~C~~C~~~~~ 58 (60)
T 1vyx_A 5 DVPVCWICNEELGNERFRACGCTGELENVHRSCLSTWLTISR--NTACQICGVVYN 58 (60)
T ss_dssp SCCEETTTTEECSCCCCCSCCCSSGGGSCCHHHHHHHHHHHT--CSBCTTTCCBCC
T ss_pred CCCEeEEeecCCCCceecCcCCCCchhhhHHHHHHHHHHhCC--CCccCCCCCeee
Confidence 456899999987766677865 4 899999999997521 479999998765
No 71
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=98.06 E-value=7.2e-07 Score=93.44 Aligned_cols=44 Identities=25% Similarity=0.569 Sum_probs=39.4
Q ss_pred CCCcccccccccccceeeccCCc-ccHhHHHHHHhcCCCCCCCCcccccCCcC
Q 007807 334 YDDECAICREPMAKAKKLLCNHL-FHLACLRSWLDQGLNEMYSCPTCRKPLFV 385 (589)
Q Consensus 334 ~~~~C~IC~e~~~~~~~lpC~H~-Fh~~Cl~~Wl~~~~~~~~~CP~CR~~~~~ 385 (589)
.+..|+||++.+.+++.+||||. ||..|+..| ..||+||.++..
T Consensus 294 ~~~~C~IC~~~~~~~v~lpCgH~~fC~~C~~~~--------~~CP~CR~~i~~ 338 (345)
T 3t6p_A 294 EERTCKVCMDKEVSVVFIPCGHLVVCQECAPSL--------RKCPICRGIIKG 338 (345)
T ss_dssp TTCBCTTTSSSBCCEEEETTCCEEECTTTGGGC--------SBCTTTCCBCCE
T ss_pred CCCCCCccCCcCCceEEcCCCChhHhHHHHhcC--------CcCCCCCCCccC
Confidence 46789999999999999999999 999999876 479999998754
No 72
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=97.98 E-value=2.9e-06 Score=71.92 Aligned_cols=48 Identities=25% Similarity=0.652 Sum_probs=37.6
Q ss_pred CCcccccccccccceee---ccCCcccHhHHHHHHhcC----CCCCCCCcc--cccC
Q 007807 335 DDECAICREPMAKAKKL---LCNHLFHLACLRSWLDQG----LNEMYSCPT--CRKP 382 (589)
Q Consensus 335 ~~~C~IC~e~~~~~~~l---pC~H~Fh~~Cl~~Wl~~~----~~~~~~CP~--CR~~ 382 (589)
..+|+||++.+..+..+ +|||.||..|+.++++.. ......||. |+..
T Consensus 5 ~~~C~IC~~~~~~~~~~~l~~CgH~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~ 61 (94)
T 1wim_A 5 SSGCKLCLGEYPVEQMTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQ 61 (94)
T ss_dssp BCCCSSSCCCCBGGGEEEETTTTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSC
T ss_pred CcCCcccCcccccccceEcCCCCCcccHHHHHHHHHHHhhcCCcccccCccccCCCC
Confidence 45799999999877543 799999999999988642 111358999 9987
No 73
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=97.72 E-value=1.9e-05 Score=67.13 Aligned_cols=46 Identities=26% Similarity=0.635 Sum_probs=38.7
Q ss_pred ccccccccccc-ceeeccCCcccHhHHHHHHhcCCCCCCCCcccccCCcC
Q 007807 337 ECAICREPMAK-AKKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFV 385 (589)
Q Consensus 337 ~C~IC~e~~~~-~~~lpC~H~Fh~~Cl~~Wl~~~~~~~~~CP~CR~~~~~ 385 (589)
.|.+|--++.. ++.+||+|+||.+|...|.+++ .+.||.|+.++..
T Consensus 3 fC~~C~~Pi~iygRmIPCkHvFCydCa~~~~~~~---~k~Cp~C~~~V~r 49 (101)
T 3vk6_A 3 FCDKCGLPIKVYGRMIPCKHVFCYDCAILHEKKG---DKMCPGCSDPVQR 49 (101)
T ss_dssp BCTTTCSBCSEEEEEETTCCEEEHHHHHHHHHTT---CCBCTTTCCBCSE
T ss_pred ecCccCCCeEEEeeeccccccHHHHHHHHHHhcc---CCCCcCcCCeeee
Confidence 58888887765 4677999999999999998764 5899999999864
No 74
>4g3o_A E3 ubiquitin-protein ligase AMFR; all-helical structure, BAG6; 1.60A {Homo sapiens}
Probab=97.52 E-value=6.6e-05 Score=57.34 Aligned_cols=29 Identities=28% Similarity=0.437 Sum_probs=27.0
Q ss_pred hHhHHHHHHHHHHhcCCCchHHHHHHHhh
Q 007807 545 IANILAMAETVREVLPHMPEDLIFQVCLD 573 (589)
Q Consensus 545 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 573 (589)
-+|+.+|||+|++|+||+|.+.|..||..
T Consensus 14 ~sql~~Mve~V~~mFPqv~~~~I~~DL~r 42 (58)
T 4g3o_A 14 QGQLNAMAHQIQEMFPQVPYHLVLQDLQL 42 (58)
T ss_dssp HHHHHHHHHHHHHHCTTSCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 57999999999999999999999999863
No 75
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=97.25 E-value=0.00018 Score=71.42 Aligned_cols=51 Identities=20% Similarity=0.478 Sum_probs=40.8
Q ss_pred CCcccccccccccceeec-cCCcccHhHHHHHHhcCCCCCCCCcccccCCcCCC
Q 007807 335 DDECAICREPMAKAKKLL-CNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFVGR 387 (589)
Q Consensus 335 ~~~C~IC~e~~~~~~~lp-C~H~Fh~~Cl~~Wl~~~~~~~~~CP~CR~~~~~~~ 387 (589)
-..|.||.+-...+++-+ |+|.||..|+..|++... +..||.|+.......
T Consensus 180 i~~C~iC~~iv~~g~~C~~C~~~~H~~C~~~~~~~~~--~~~CP~C~~~W~~~~ 231 (238)
T 3nw0_A 180 VKICNICHSLLIQGQSCETCGIRMHLPCVAKYFQSNA--EPRCPHCNDYWPHEI 231 (238)
T ss_dssp CCBCTTTCSBCSSCEECSSSCCEECHHHHHHHTTTCS--SCBCTTTCCBCCSCC
T ss_pred CCcCcchhhHHhCCcccCccChHHHHHHHHHHHHhCC--CCCCCCCCCCCCCCC
Confidence 347999999988776554 999999999999997631 369999999876553
No 76
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=91.56 E-value=0.063 Score=45.34 Aligned_cols=31 Identities=23% Similarity=0.508 Sum_probs=26.1
Q ss_pred CCcccccccc-ccccee--eccCCcccHhHHHHH
Q 007807 335 DDECAICREP-MAKAKK--LLCNHLFHLACLRSW 365 (589)
Q Consensus 335 ~~~C~IC~e~-~~~~~~--lpC~H~Fh~~Cl~~W 365 (589)
+..|.||.+. +.++++ ++|+|.||..|+..+
T Consensus 3 e~~C~~C~~~~~~~av~~C~~C~~~~C~~Cl~~~ 36 (101)
T 2jun_A 3 KVLCQFCDQDPAQDAVKTCVTCEVSYCDECLKAT 36 (101)
T ss_dssp CCBCTTCCSSSCCBCCEEETTTTEEECHHHHHHH
T ss_pred CCCCcCCCCCCCCCceEECCcCChHHhHHHCHHH
Confidence 4579999976 567776 899999999999873
No 77
>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3
Probab=90.96 E-value=0.12 Score=42.30 Aligned_cols=32 Identities=28% Similarity=0.712 Sum_probs=23.7
Q ss_pred cCCCcccccccccccceeec---cCCcccHhHHHHH
Q 007807 333 AYDDECAICREPMAKAKKLL---CNHLFHLACLRSW 365 (589)
Q Consensus 333 ~~~~~C~IC~e~~~~~~~lp---C~H~Fh~~Cl~~W 365 (589)
..|+.|.||- .+.....+| |+-+||..|+++-
T Consensus 13 ~~D~~C~VC~-~~t~~~l~pCRvC~RvfH~~CL~r~ 47 (89)
T 1wil_A 13 VNDEMCDVCE-VWTAESLFPCRVCTRVFHDGCLRRM 47 (89)
T ss_dssp CCSCCCTTTC-CCCSSCCSSCSSSSSCCCHHHHHHH
T ss_pred CCCcccCccc-cccccceeccccccccccHhhcccc
Confidence 4788999995 233444444 7899999999885
No 78
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=90.14 E-value=0.14 Score=40.25 Aligned_cols=51 Identities=18% Similarity=0.365 Sum_probs=34.5
Q ss_pred cCCCcccccccccccceeeccCCcccHhHHHHHHhcCCCCCCCCcccccCC
Q 007807 333 AYDDECAICREPMAKAKKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPL 383 (589)
Q Consensus 333 ~~~~~C~IC~e~~~~~~~lpC~H~Fh~~Cl~~Wl~~~~~~~~~CP~CR~~~ 383 (589)
..+..|.||.+.-+.-.--.|...||..|+...+.......-.||.|+...
T Consensus 10 ~~~~~C~vC~~~~~ll~Cd~C~~~~H~~Cl~P~l~~~P~g~W~C~~C~~~~ 60 (66)
T 2lri_C 10 APGARCGVCGDGTDVLRCTHCAAAFHWRCHFPAGTSRPGTGLRCRSCSGDV 60 (66)
T ss_dssp CTTCCCTTTSCCTTCEECSSSCCEECHHHHCTTTCCCCSSSCCCTTTTTCC
T ss_pred CCCCCcCCCCCCCeEEECCCCCCceecccCCCccCcCCCCCEECccccCCC
Confidence 345689999864221111168899999999887765433356899997643
No 79
>2ko5_A Ring finger protein Z; lassa fever virus-Z, negative regulator of EIF4E, cytoplasm, HOST-virus interaction, lipoprotein, membrane; NMR {Lassa virus josiah}
Probab=88.23 E-value=0.23 Score=41.46 Aligned_cols=45 Identities=31% Similarity=0.602 Sum_probs=36.9
Q ss_pred CcccccccccccceeeccC-CcccHhHHHHHHhcCCCCCCCCcccccCCcCC
Q 007807 336 DECAICREPMAKAKKLLCN-HLFHLACLRSWLDQGLNEMYSCPTCRKPLFVG 386 (589)
Q Consensus 336 ~~C~IC~e~~~~~~~lpC~-H~Fh~~Cl~~Wl~~~~~~~~~CP~CR~~~~~~ 386 (589)
..|-.||-..+ -.+.|. |-.|..|+...+.. +..||+|+.+++.+
T Consensus 29 ~nCKsCWf~~k--~LV~C~dHYLCl~CLtlmL~~----SdrCpIC~~pLPtk 74 (99)
T 2ko5_A 29 QFCKSCWFENK--GLVECNNHYLCLNCLTLLLSV----SNRCPICKMPLPTK 74 (99)
T ss_dssp CCCCSSCSCCS--SEEECSSCEEEHHHHHHTCSS----SSEETTTTEECCCC
T ss_pred ccChhhccccC--CeeeecchhhHHHHHHHHHhh----ccCCcccCCcCCcc
Confidence 47999997654 244565 99999999998887 69999999999865
No 80
>3m62_A Ubiquitin conjugation factor E4; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} PDB: 3m63_A* 2qiz_A 2qj0_A
Probab=85.99 E-value=1.4 Score=51.46 Aligned_cols=47 Identities=15% Similarity=0.043 Sum_probs=42.1
Q ss_pred CCcccccccccccceeeccC-CcccHhHHHHHHhcCCCCCCCCcccccCCcC
Q 007807 335 DDECAICREPMAKAKKLLCN-HLFHLACLRSWLDQGLNEMYSCPTCRKPLFV 385 (589)
Q Consensus 335 ~~~C~IC~e~~~~~~~lpC~-H~Fh~~Cl~~Wl~~~~~~~~~CP~CR~~~~~ 385 (589)
+-.|||-.+-|.+|+.+|.| +.|-+.+|.+|+.+ +.+||.=|.++..
T Consensus 891 ~F~cPIs~~lM~DPVilpsG~~TydR~~I~~wl~~----~~tdP~Tr~~L~~ 938 (968)
T 3m62_A 891 EFLDPLMYTIMKDPVILPASKMNIDRSTIKAHLLS----DSTDPFNRMPLKL 938 (968)
T ss_dssp GGBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHTT----CCBCTTTCCBCCG
T ss_pred HhCCcchhhHHhCCeEcCCCCEEECHHHHHHHHhc----CCCCCCCCCCCCc
Confidence 34699999999999999998 68999999999987 5899999998864
No 81
>2cs3_A Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.3
Probab=79.55 E-value=1.2 Score=36.15 Aligned_cols=45 Identities=24% Similarity=0.549 Sum_probs=33.3
Q ss_pred CCcccccccccccceeecc----CCcccHhHHHHHHhcC-CCCCCCCccc
Q 007807 335 DDECAICREPMAKAKKLLC----NHLFHLACLRSWLDQG-LNEMYSCPTC 379 (589)
Q Consensus 335 ~~~C~IC~e~~~~~~~lpC----~H~Fh~~Cl~~Wl~~~-~~~~~~CP~C 379 (589)
...|.+|.|.+++..-..| .|.||..|-+.-++++ ......||.=
T Consensus 15 ~l~CtlC~erLEdtHFVQCPsv~~HkFCFpCsr~sIk~q~~~~EvyCPSG 64 (93)
T 2cs3_A 15 PLCCTICHERLEDTHFVQCPSVPSHKFCFPCSRESIKAQGATGEVYCPSG 64 (93)
T ss_dssp SCCCSSSCSCCSSTTSEECSSCSSCEECHHHHHHHHHHHHSSSCCCCTTS
T ss_pred eeEeecchhhhccCceeeCCCccCCeeeccccHHHHHhcCCCCcEECCCC
Confidence 4579999999999876666 5999999999888653 1223456554
No 82
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A
Probab=79.27 E-value=0.43 Score=36.70 Aligned_cols=51 Identities=24% Similarity=0.471 Sum_probs=32.5
Q ss_pred cCCCcccccccccccceeeccCCcccHhHHHHHHhcCCCCCCCCcccccCC
Q 007807 333 AYDDECAICREPMAKAKKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPL 383 (589)
Q Consensus 333 ~~~~~C~IC~e~~~~~~~lpC~H~Fh~~Cl~~Wl~~~~~~~~~CP~CR~~~ 383 (589)
..+..|.+|.+.-+--.--.|...||..|+..-+.+.....-.||.|+...
T Consensus 7 ~~~~~C~vC~~~g~ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~~ 57 (61)
T 1mm2_A 7 HHMEFCRVCKDGGELLCCDTCPSSYHIHCLNPPLPEIPNGEWLCPRCTCPA 57 (61)
T ss_dssp SSCSSCTTTCCCSSCBCCSSSCCCBCSSSSSSCCSSCCSSCCCCTTTTTTC
T ss_pred CCCCcCCCCCCCCCEEEcCCCCHHHcccccCCCcCcCCCCccCChhhcCch
Confidence 356789999864211111268899999999754433222246799997654
No 83
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens}
Probab=78.74 E-value=0.62 Score=35.80 Aligned_cols=47 Identities=26% Similarity=0.760 Sum_probs=32.5
Q ss_pred cCCCcccccccccccceee---ccCCcccHhHHHHHHhcCCCCCCCCcccccC
Q 007807 333 AYDDECAICREPMAKAKKL---LCNHLFHLACLRSWLDQGLNEMYSCPTCRKP 382 (589)
Q Consensus 333 ~~~~~C~IC~e~~~~~~~l---pC~H~Fh~~Cl~~Wl~~~~~~~~~CP~CR~~ 382 (589)
..+..|.+|.+. ...+ .|...||..|+..-+.+.....-.||.|++.
T Consensus 9 ~~~~~C~vC~~~---g~ll~CD~C~~~fH~~Cl~p~l~~~p~g~W~C~~C~~~ 58 (61)
T 2l5u_A 9 DHQDYCEVCQQG---GEIILCDTCPRAYHMVCLDPDMEKAPEGKWSCPHCEKE 58 (61)
T ss_dssp CCCSSCTTTSCC---SSEEECSSSSCEEEHHHHCTTCCSCCCSSCCCTTGGGG
T ss_pred CCCCCCccCCCC---CcEEECCCCChhhhhhccCCCCCCCCCCceECcccccc
Confidence 356789999874 2233 6889999999986544322235789999753
No 84
>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A*
Probab=78.17 E-value=0.4 Score=46.08 Aligned_cols=51 Identities=25% Similarity=0.393 Sum_probs=34.1
Q ss_pred cCCCcccccccccccceeeccCCcccHhHHHHHHhcCCCCCCCCcccccCC
Q 007807 333 AYDDECAICREPMAKAKKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPL 383 (589)
Q Consensus 333 ~~~~~C~IC~e~~~~~~~lpC~H~Fh~~Cl~~Wl~~~~~~~~~CP~CR~~~ 383 (589)
..++.|.+|.+.-+-...-.|...||..|+..-+.......-.||.|+..-
T Consensus 5 ~~~~~C~~C~~~g~ll~Cd~C~~~~H~~Cl~p~l~~~p~~~W~C~~C~~~~ 55 (207)
T 3u5n_A 5 PNEDWCAVCQNGGDLLCCEKCPKVFHLTCHVPTLLSFPSGDWICTFCRDIG 55 (207)
T ss_dssp SSCSSBTTTCCCEEEEECSSSSCEECTTTSSSCCSSCCSSCCCCTTTSCSS
T ss_pred CCCCCCCCCCCCCceEEcCCCCCccCCccCCCCCCCCCCCCEEeCceeCcc
Confidence 356789999865321111158899999999776554322357899998754
No 85
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*
Probab=77.55 E-value=0.31 Score=38.95 Aligned_cols=51 Identities=18% Similarity=0.423 Sum_probs=33.3
Q ss_pred CCCcccccccccccceee---ccCCcccHhHHHHHHhcCCCCCCCCcccccCCc
Q 007807 334 YDDECAICREPMAKAKKL---LCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLF 384 (589)
Q Consensus 334 ~~~~C~IC~e~~~~~~~l---pC~H~Fh~~Cl~~Wl~~~~~~~~~CP~CR~~~~ 384 (589)
.+..|.+|.........+ .|.-.||..|+..-........-.||.|+..+.
T Consensus 17 ~~~~C~~C~~~~~~~~mi~CD~C~~wfH~~Cv~~~~~~~~~~~w~C~~C~~~~~ 70 (75)
T 2k16_A 17 QIWICPGCNKPDDGSPMIGCDDCDDWYHWPCVGIMAAPPEEMQWFCPKCANKIK 70 (75)
T ss_dssp EEECBTTTTBCCSSCCEEECSSSSSEEEHHHHTCSSCCCSSSCCCCTTTHHHHC
T ss_pred CCcCCCCCCCCCCCCCEEEcCCCCcccccccCCCCccCCCCCCEEChhccCchh
Confidence 345699998775433333 588899999986433221112578999987654
No 86
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=77.44 E-value=0.84 Score=33.49 Aligned_cols=45 Identities=36% Similarity=0.805 Sum_probs=29.9
Q ss_pred cccccccccccceee---ccCCcccHhHHHHHHhcCCCCCCCCccccc
Q 007807 337 ECAICREPMAKAKKL---LCNHLFHLACLRSWLDQGLNEMYSCPTCRK 381 (589)
Q Consensus 337 ~C~IC~e~~~~~~~l---pC~H~Fh~~Cl~~Wl~~~~~~~~~CP~CR~ 381 (589)
.|.||...-+....+ .|...||..|+..=+.+.....-.||.|+.
T Consensus 2 ~C~vC~~~~~~~~ll~Cd~C~~~~H~~Cl~p~l~~~P~g~W~C~~C~~ 49 (51)
T 1f62_A 2 RCKVCRKKGEDDKLILCDECNKAFHLFCLRPALYEVPDGEWQCPACQP 49 (51)
T ss_dssp CCTTTCCSSCCSCCEECTTTCCEECHHHHCTTCCSCCSSCCSCTTTSC
T ss_pred CCCCCCCCCCCCCEEECCCCChhhCcccCCCCcCCCCCCcEECcCccc
Confidence 588998764433333 688999999997544332222467999975
No 87
>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A
Probab=77.14 E-value=0.5 Score=44.46 Aligned_cols=50 Identities=26% Similarity=0.458 Sum_probs=33.4
Q ss_pred CCCcccccccccccceeeccCCcccHhHHHHHHhcCCCCCCCCcccccCC
Q 007807 334 YDDECAICREPMAKAKKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPL 383 (589)
Q Consensus 334 ~~~~C~IC~e~~~~~~~lpC~H~Fh~~Cl~~Wl~~~~~~~~~CP~CR~~~ 383 (589)
+++.|.+|.+.-+-...-.|...||..|+..-+.......-.||.|+..-
T Consensus 3 ~~~~C~~C~~~g~ll~Cd~C~~~~H~~C~~p~l~~~p~~~W~C~~C~~~~ 52 (184)
T 3o36_A 3 NEDWCAVCQNGGELLCCEKCPKVFHLSCHVPTLTNFPSGEWICTFCRDLS 52 (184)
T ss_dssp SCSSCTTTCCCSSCEECSSSSCEECTTTSSSCCSSCCSSCCCCTTTSCSS
T ss_pred CCCccccCCCCCeeeecCCCCcccCccccCCCCCCCCCCCEECccccCcc
Confidence 56789999865221111158899999998766554322357899998754
No 88
>2di0_A Activating signal cointegrator 1 complex subunit 2; ASCC2, CUE domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=75.64 E-value=3.1 Score=32.99 Aligned_cols=33 Identities=15% Similarity=0.289 Sum_probs=26.4
Q ss_pred chhhHhHHHHHHHHHHhcCCCchHHHHHHHhhh
Q 007807 542 NENIANILAMAETVREVLPHMPEDLIFQVCLDF 574 (589)
Q Consensus 542 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 574 (589)
.-.-+++..+..+|||++|+.-+..|.+-|-.|
T Consensus 7 ~~~~~~l~s~I~qV~DLfPdLG~gfi~~~L~~y 39 (71)
T 2di0_A 7 GMCGVELDSLISQVKDLLPDLGEGFILACLEYY 39 (71)
T ss_dssp CCSSHHHHHHHHHHHHHCCSSCHHHHHHHHHHT
T ss_pred CCcHHHHHHHHHHHHHHcccCCHHHHHHHHHHh
Confidence 334578889999999999999999987655443
No 89
>1fp0_A KAP-1 corepressor; PHD domain, C3HC4 type zinc binding domain, -structure, transcription; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=72.31 E-value=1.3 Score=36.72 Aligned_cols=50 Identities=26% Similarity=0.500 Sum_probs=33.2
Q ss_pred cCCCcccccccccccceeeccCCcccHhHHHHHHhcCCCCCCCCcccccC
Q 007807 333 AYDDECAICREPMAKAKKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKP 382 (589)
Q Consensus 333 ~~~~~C~IC~e~~~~~~~lpC~H~Fh~~Cl~~Wl~~~~~~~~~CP~CR~~ 382 (589)
..++.|.+|.+.-+--.--.|.-.||..|+.+=+.+-....-.||.|+..
T Consensus 23 ~n~~~C~vC~~~g~LL~CD~C~~~fH~~Cl~PpL~~~P~g~W~C~~C~~~ 72 (88)
T 1fp0_A 23 DSATICRVCQKPGDLVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHVL 72 (88)
T ss_dssp SSSSCCSSSCSSSCCEECTTSSCEECTTSSSTTCCCCCSSSCCCCSCCCC
T ss_pred CCCCcCcCcCCCCCEEECCCCCCceecccCCCCCCCCcCCCcCCccccCC
Confidence 45678999987532111116788999999977554432235689999864
No 90
>2ro1_A Transcription intermediary factor 1-beta; KAP, TIF, PHD finger, bromodomain, SUMO, acetylation, alternative splicing, metal-binding, nucleus; NMR {Homo sapiens}
Probab=71.31 E-value=0.97 Score=42.81 Aligned_cols=48 Identities=27% Similarity=0.536 Sum_probs=32.2
Q ss_pred CCcccccccccccceeeccCCcccHhHHHHHHhcCCCCCCCCcccccC
Q 007807 335 DDECAICREPMAKAKKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKP 382 (589)
Q Consensus 335 ~~~C~IC~e~~~~~~~lpC~H~Fh~~Cl~~Wl~~~~~~~~~CP~CR~~ 382 (589)
++.|.+|.+.-+--..-.|...||..|+..=+.+.....-.||.|+..
T Consensus 2 ~~~C~~C~~~g~ll~Cd~C~~~~H~~Cl~p~l~~~p~g~W~C~~C~~~ 49 (189)
T 2ro1_A 2 ATICRVCQKPGDLVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHVL 49 (189)
T ss_dssp CCCBTTTCCCSSCCCCTTTCCBCCSTTSTTCCSSCCCTTCCTTTTSCS
T ss_pred CCcCccCCCCCceeECCCCCchhccccCCCCcccCCCCCCCCcCccCC
Confidence 568999987633222236889999999976444322234689999864
No 91
>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=69.96 E-value=0.46 Score=35.81 Aligned_cols=49 Identities=29% Similarity=0.651 Sum_probs=30.8
Q ss_pred cCCCcccccccccccceeeccCCcccHhHHHHHHhcCCCCCCCCccccc
Q 007807 333 AYDDECAICREPMAKAKKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRK 381 (589)
Q Consensus 333 ~~~~~C~IC~e~~~~~~~lpC~H~Fh~~Cl~~Wl~~~~~~~~~CP~CR~ 381 (589)
..+..|.+|.+.-+-..--.|...||..|+..-+.......-.||.|+.
T Consensus 7 ~~~~~C~vC~~~g~ll~Cd~C~~~~H~~Cl~ppl~~~p~g~W~C~~C~~ 55 (56)
T 2yql_A 7 GHEDFCSVCRKSGQLLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQD 55 (56)
T ss_dssp SSCCSCSSSCCSSCCEECSSSSCEECSSSSSSCCCSCCCSSCCCHHHHC
T ss_pred CCCCCCccCCCCCeEEEcCCCCcceECccCCCCcCCCCCCceEChhhhC
Confidence 3567899998752111112688999999997544332222456888864
No 92
>1xwh_A Autoimmune regulator; PHD domain, Zn binding domain, apeced, nucleosome, E3 ligase, transcription; NMR {Homo sapiens} PDB: 2ke1_A 2kft_A
Probab=66.35 E-value=0.94 Score=35.30 Aligned_cols=49 Identities=33% Similarity=0.613 Sum_probs=31.5
Q ss_pred CCCcccccccccccceeeccCCcccHhHHHHHHhcCCCCCCCCcccccC
Q 007807 334 YDDECAICREPMAKAKKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKP 382 (589)
Q Consensus 334 ~~~~C~IC~e~~~~~~~lpC~H~Fh~~Cl~~Wl~~~~~~~~~CP~CR~~ 382 (589)
.++.|.||.+.-+-..--.|...||..|+..-+.......-.||.|+..
T Consensus 7 ~~~~C~vC~~~g~ll~CD~C~~~fH~~Cl~ppl~~~P~g~W~C~~C~~~ 55 (66)
T 1xwh_A 7 NEDECAVCRDGGELICCDGCPRAFHLACLSPPLREIPSGTWRCSSCLQA 55 (66)
T ss_dssp CCCSBSSSSCCSSCEECSSCCCEECTTTSSSCCSSCCSSCCCCHHHHHT
T ss_pred CCCCCccCCCCCCEEEcCCCChhhcccccCCCcCcCCCCCeECccccCc
Confidence 5678999987521111116889999999975443322224679999754
No 93
>2puy_A PHD finger protein 21A; PHD finger, histone CODE, BRAF-HDAC complex, transcription; 1.43A {Homo sapiens}
Probab=64.83 E-value=0.81 Score=34.90 Aligned_cols=50 Identities=28% Similarity=0.652 Sum_probs=31.9
Q ss_pred CCCcccccccccccceeeccCCcccHhHHHHHHhcCCCCCCCCcccccCC
Q 007807 334 YDDECAICREPMAKAKKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPL 383 (589)
Q Consensus 334 ~~~~C~IC~e~~~~~~~lpC~H~Fh~~Cl~~Wl~~~~~~~~~CP~CR~~~ 383 (589)
.+..|.+|.+.-+-..--.|...||..|+..-+.......-.||.|+...
T Consensus 4 ~~~~C~vC~~~g~ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~~ 53 (60)
T 2puy_A 4 HEDFCSVCRKSGQLLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQDQM 53 (60)
T ss_dssp CCSSCTTTCCCSSCEECSSSSCEECGGGSSSCCSSCCCSCCCCHHHHHHH
T ss_pred CCCCCcCCCCCCcEEEcCCCCcCEECCcCCCCcCCCCCCceEChhccChh
Confidence 46789999875211111168899999999754433222346799997644
No 94
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=63.35 E-value=1.6 Score=37.48 Aligned_cols=47 Identities=23% Similarity=0.616 Sum_probs=30.8
Q ss_pred CCCcccccccccccceee---ccCCcccHhHHHHHHhcCCCCCCCCcccc
Q 007807 334 YDDECAICREPMAKAKKL---LCNHLFHLACLRSWLDQGLNEMYSCPTCR 380 (589)
Q Consensus 334 ~~~~C~IC~e~~~~~~~l---pC~H~Fh~~Cl~~Wl~~~~~~~~~CP~CR 380 (589)
+++.|.+|.+.-+....+ .|+..||..|+...........-.||.|+
T Consensus 6 ~~~~C~~C~~~g~~~~ll~C~~C~~~~H~~Cl~~~~~~~~~~~W~C~~C~ 55 (111)
T 2ysm_A 6 SGANCAVCDSPGDLLDQFFCTTCGQHYHGMCLDIAVTPLKRAGWQCPECK 55 (111)
T ss_dssp CCSCBTTTCCCCCTTTSEECSSSCCEECTTTTTCCCCTTTSTTCCCTTTC
T ss_pred CCCCCcCCCCCCCCcCCeECCCCCCCcChHHhCCccccccccCccCCcCC
Confidence 567899998875432222 68899999999765432111245677775
No 95
>2g45_A Ubiquitin carboxyl-terminal hydrolase 5; zinc finger, hydrolase; 1.99A {Homo sapiens} SCOP: g.44.1.5 PDB: 2g43_A 2l80_A
Probab=59.85 E-value=0.53 Score=41.95 Aligned_cols=84 Identities=7% Similarity=0.053 Sum_probs=42.4
Q ss_pred hHHHHHHhcCCCCCCCCcccccCCcCCCc-----ccccCCCCCCCCchHHH-----HhhhhcCCCC------CCCCC-CC
Q 007807 360 ACLRSWLDQGLNEMYSCPTCRKPLFVGRR-----EIEANSRPGEVSSDEQL-----ARQLSMGLDR------QNNTG-QT 422 (589)
Q Consensus 360 ~Cl~~Wl~~~~~~~~~CP~CR~~~~~~~~-----~~~~~~~~~~~~~~e~~-----~~~~~~g~~~------~~~~~-~~ 422 (589)
.|+.+|-+. .||.|+........ .......+.++...+++ ++..+++++. .+|+. |+
T Consensus 2 ~~~~~W~~e------~~~~C~h~~~l~q~~~~~~~~~~~~~C~~C~~~~~LwlCL~CG~vgCgr~~~~g~g~~~HA~~H~ 75 (129)
T 2g45_A 2 QEVQAWDGE------VRQVSKHAFSLKQLDNPARIPPCGWKCSKCDMRENLWLNLTDGSILCGRRYFDGSGGNNHAVEHY 75 (129)
T ss_dssp ---------------CCEECTTTTTCCCCSSCCCCCCCBCCCSSSSCCSSEEEETTTCCEEECCBCTTSCBCCSHHHHHH
T ss_pred hHHHhhcCC------CCCCCCCcCcccccccccccCCCCCcCccccCcCceEEeccCCccccCccccCCCCcCcHHHHHh
Confidence 688889643 57777665322111 11223457777776654 6778888875 33333 44
Q ss_pred C-CCCCCCCCCCC--CCCCCCCCCCCCCCCcc
Q 007807 423 L-PTGVFPNQTQP--PVEGSPWRNAGLDSSWL 451 (589)
Q Consensus 423 ~-~~~~~p~~~~~--~~~~~~wr~~G~~~sw~ 451 (589)
. +.|+......+ +.+..+|.|+. +.++
T Consensus 76 ~~t~H~l~v~l~t~~~~~~~vwcY~c--d~~V 105 (129)
T 2g45_A 76 RETGYPLAVKLGTITPDGADVYSYDE--DDMV 105 (129)
T ss_dssp HHHCCCEEEETTCCBTTBCCEEETTT--TEEE
T ss_pred hhcCCCEEEECCCCCCCCCeEEECCC--CCEe
Confidence 4 55665554333 23468899987 6665
No 96
>1wev_A Riken cDNA 1110020M19; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2
Probab=59.32 E-value=1.3 Score=36.71 Aligned_cols=52 Identities=17% Similarity=0.546 Sum_probs=34.8
Q ss_pred CCCccccccccccc--ceee---ccCCcccHhHHHHHHhc----CCCCCCCCcccccCCcC
Q 007807 334 YDDECAICREPMAK--AKKL---LCNHLFHLACLRSWLDQ----GLNEMYSCPTCRKPLFV 385 (589)
Q Consensus 334 ~~~~C~IC~e~~~~--~~~l---pC~H~Fh~~Cl~~Wl~~----~~~~~~~CP~CR~~~~~ 385 (589)
.+..|.+|...-.. ...+ .|...||..|+..-+.. .....-.||.|+.....
T Consensus 15 ~~~~C~vC~~~~~~~~~~ll~CD~C~~~yH~~Cl~Ppl~~~~~~~p~g~W~C~~C~~~~~~ 75 (88)
T 1wev_A 15 MGLACVVCRQMTVASGNQLVECQECHNLYHQDCHKPQVTDKEVNDPRLVWYCARCTRQMKR 75 (88)
T ss_dssp HCCSCSSSCCCCCCTTCCEEECSSSCCEEETTTSSSCCCHHHHHCTTCCCCCHHHHHHHCC
T ss_pred CCCcCCCCCCCCCCCCCceEECCCCCCeEcCccCCCcccccccCCCCCCeeCccccchhhh
Confidence 46789999976432 2233 68899999999765431 11225689999876543
No 97
>2e6r_A Jumonji/ARID domain-containing protein 1D; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=59.04 E-value=1 Score=37.63 Aligned_cols=49 Identities=24% Similarity=0.522 Sum_probs=32.6
Q ss_pred CCCcccccccccccceee---ccCCcccHhHHHHHHhcCCCCCCCCcccccC
Q 007807 334 YDDECAICREPMAKAKKL---LCNHLFHLACLRSWLDQGLNEMYSCPTCRKP 382 (589)
Q Consensus 334 ~~~~C~IC~e~~~~~~~l---pC~H~Fh~~Cl~~Wl~~~~~~~~~CP~CR~~ 382 (589)
.+..|.||...-.....+ .|...||..|+..=+..-....-.||.|+..
T Consensus 15 ~~~~C~vC~~~~~~~~ll~CD~C~~~~H~~Cl~Ppl~~~P~g~W~C~~C~~~ 66 (92)
T 2e6r_A 15 DSYICQVCSRGDEDDKLLFCDGCDDNYHIFCLLPPLPEIPRGIWRCPKCILA 66 (92)
T ss_dssp CCCCCSSSCCSGGGGGCEECTTTCCEECSSSSSSCCSSCCSSCCCCHHHHHH
T ss_pred CCCCCccCCCcCCCCCEEEcCCCCchhccccCCCCcccCCCCCcCCccCcCc
Confidence 456899998875433333 6889999999974443322224579999753
No 98
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A
Probab=59.03 E-value=5.9 Score=35.71 Aligned_cols=49 Identities=22% Similarity=0.473 Sum_probs=33.5
Q ss_pred cCCCcccccccccccceeeccCCcccHhHHHHHHhc-------CCCCCCCCccccc
Q 007807 333 AYDDECAICREPMAKAKKLLCNHLFHLACLRSWLDQ-------GLNEMYSCPTCRK 381 (589)
Q Consensus 333 ~~~~~C~IC~e~~~~~~~lpC~H~Fh~~Cl~~Wl~~-------~~~~~~~CP~CR~ 381 (589)
.+++.|.+|.+.-+-----.|-..||..||..-+.. .....-.||.|+.
T Consensus 61 g~~d~C~vC~~GG~LlcCD~Cpr~Fh~~Cl~p~l~~~~l~~i~~p~~~W~C~~C~~ 116 (142)
T 2lbm_A 61 GMDEQCRWCAEGGNLICCDFCHNAFCKKCILRNLGRKELSTIMDENNQWYCYICHP 116 (142)
T ss_dssp SCBCSCSSSCCCSSEEECSSSCCEEEHHHHHHHTCHHHHHHHHTSTTCCCCTTTCC
T ss_pred CCCCeecccCCCCcEEeCCCCCCeeeHhhcCCCCChhhhhhcccCCCCCEeecccC
Confidence 467899999886432222278899999999965521 1122578999974
No 99
>1wen_A Inhibitor of growth family, member 4; ING1-like protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.50.1.2 PDB: 1wes_A
Probab=58.52 E-value=5.7 Score=31.36 Aligned_cols=46 Identities=24% Similarity=0.635 Sum_probs=29.4
Q ss_pred CCCcccccccccccceee---c--cC-CcccHhHHHHHHhcCCCCCCCCcccccCC
Q 007807 334 YDDECAICREPMAKAKKL---L--CN-HLFHLACLRSWLDQGLNEMYSCPTCRKPL 383 (589)
Q Consensus 334 ~~~~C~IC~e~~~~~~~l---p--C~-H~Fh~~Cl~~Wl~~~~~~~~~CP~CR~~~ 383 (589)
.+..| ||..... ...+ . |. ..||..|+. +.......-.||.|+..-
T Consensus 15 ~~~~C-~C~~~~~-g~MI~CD~~~C~~~wfH~~Cvg--l~~~p~g~w~Cp~C~~~~ 66 (71)
T 1wen_A 15 EPTYC-LCHQVSY-GEMIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQES 66 (71)
T ss_dssp SCCCS-TTCCCSC-SSEECCSCSSCSCCCEETTTTT--CSSCCSSCCCCTTTSSCS
T ss_pred CCCEE-ECCCCCC-CCEeEeeCCCCCCccEecccCC--cCcCCCCCEECCCCCccc
Confidence 34467 8988643 3344 3 55 589999996 433322357899997643
No 100
>3ihp_A Ubiquitin carboxyl-terminal hydrolase 5; hydrolase, protease, thiol protease, UBL conjugation pathway, metal-binding, zinc-finger,structural genomics; 2.80A {Homo sapiens}
Probab=57.14 E-value=0.57 Score=54.52 Aligned_cols=93 Identities=9% Similarity=0.069 Sum_probs=44.3
Q ss_pred eccCCcccHhHHHHHHhcCCCCCCCCcccccCCcCCC-----cccccCCCCCCCCchHHH-----HhhhhcCCCC-----
Q 007807 351 LLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFVGR-----REIEANSRPGEVSSDEQL-----ARQLSMGLDR----- 415 (589)
Q Consensus 351 lpC~H~Fh~~Cl~~Wl~~~~~~~~~CP~CR~~~~~~~-----~~~~~~~~~~~~~~~e~~-----~~~~~~g~~~----- 415 (589)
+.+.|.++..|+..|-.. .||.|+....... ........|.+|...+++ |+..+||+..
T Consensus 174 ~~~~~~~~~~~~~~w~~~------~~~~c~h~~~~~~~~~~~~~~~~~~~C~~c~~~~~lw~CL~Cg~vgC~r~~~~~~~ 247 (854)
T 3ihp_A 174 LSADSASRKQEVQAWDGE------VRQVSKHAFSLKQLDNPARIPPCGWKCSKCDMRENLWLNLTDGSILCGRRYFDGSG 247 (854)
T ss_dssp TC----------------------CCCBCTTTTTCCCCSSCCCCCSSCCCCSSSCCCSSEEEETTTCCEEECCBC-CCCB
T ss_pred HhcCCHHHHHHHHhhcCc------cCCCCcCccccccccccccCCCCCCcCcCcCCcCceEEEecCCCccccccccCCCC
Confidence 467899999999999754 5888877643211 111223568888877765 7788888765
Q ss_pred -CCCCC-CCC-CCCCCCCCCCC--CCCCCCCCCCCCCCCcc
Q 007807 416 -QNNTG-QTL-PTGVFPNQTQP--PVEGSPWRNAGLDSSWL 451 (589)
Q Consensus 416 -~~~~~-~~~-~~~~~p~~~~~--~~~~~~wr~~G~~~sw~ 451 (589)
..|+. |.. +.|.......+ +.+..+|.|.. +.++
T Consensus 248 ~~~ha~~H~~~~~H~~~~~l~t~~~~~~~~~cy~~--~~~v 286 (854)
T 3ihp_A 248 GNNHAVEHYRETGYPLAVKLGTITPDGADVYSYDE--DDMV 286 (854)
T ss_dssp CCSHHHHHHHHHCCCEEEETTCCBTTBCCEEETTT--TEEC
T ss_pred CchHHHHHHhhcCCcEEEEcCCcCCCCCeEEEccC--CCee
Confidence 22333 444 56666554433 33468888886 5444
No 101
>2dhy_A CUE domain-containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=56.18 E-value=13 Score=29.16 Aligned_cols=27 Identities=19% Similarity=0.245 Sum_probs=22.3
Q ss_pred HhHHHHHHHHHHhcCCCchHHHHHHHh
Q 007807 546 ANILAMAETVREVLPHMPEDLIFQVCL 572 (589)
Q Consensus 546 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 572 (589)
.+..+.+++++|++|+|..++|--+|-
T Consensus 16 ~~~~~~v~~L~~MFP~lD~~vI~~vL~ 42 (67)
T 2dhy_A 16 LEFNQAMDDFKTMFPNMDYDIIECVLR 42 (67)
T ss_dssp CCSHHHHHHHHHHCSSSCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHCCCCCHHHHHHHHH
Confidence 455667889999999999999987763
No 102
>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=55.00 E-value=1.4 Score=33.96 Aligned_cols=49 Identities=27% Similarity=0.616 Sum_probs=31.6
Q ss_pred CCCcccccccccccc-eee---ccCCcccHhHHHHHHhc-CCCCCCCCcccccC
Q 007807 334 YDDECAICREPMAKA-KKL---LCNHLFHLACLRSWLDQ-GLNEMYSCPTCRKP 382 (589)
Q Consensus 334 ~~~~C~IC~e~~~~~-~~l---pC~H~Fh~~Cl~~Wl~~-~~~~~~~CP~CR~~ 382 (589)
++..|++|..+..+. ..+ .|..-||..|+.--... .......||.|+..
T Consensus 5 e~~~C~~C~~~~~~~~~mI~Cd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~k 58 (64)
T 1we9_A 5 SSGQCGACGESYAADEFWICCDLCEMWFHGKCVKITPARAEHIKQYKCPSCSNK 58 (64)
T ss_dssp SCCCCSSSCCCCCSSSCEEECSSSCCEEETTTTTCCTTGGGGCSSCCCHHHHTT
T ss_pred CCCCCCCCCCccCCCCCEEEccCCCCCCCccccCcChhHhcCCCcEECCCCcCc
Confidence 456799999887533 222 68889999998432111 01135789999763
No 103
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=53.91 E-value=2.8 Score=36.04 Aligned_cols=45 Identities=29% Similarity=0.672 Sum_probs=29.7
Q ss_pred ccccccccccc-ceee---ccCCcccHhHHHHHHhcCCCCCCCCccccc
Q 007807 337 ECAICREPMAK-AKKL---LCNHLFHLACLRSWLDQGLNEMYSCPTCRK 381 (589)
Q Consensus 337 ~C~IC~e~~~~-~~~l---pC~H~Fh~~Cl~~Wl~~~~~~~~~CP~CR~ 381 (589)
.|.+|.+.-.+ ...+ .|...||..|+..-+.......-.||.||.
T Consensus 63 ~C~vC~~~~~~~~~ll~Cd~C~~~yH~~Cl~p~l~~~P~~~W~C~~C~~ 111 (112)
T 3v43_A 63 TCSSCRDQGKNADNMLFCDSCDRGFHMECCDPPLTRMPKGMWICQICRP 111 (112)
T ss_dssp CBTTTCCCCCTTCCCEECTTTCCEECGGGCSSCCSSCCSSCCCCTTTSC
T ss_pred ccccccCcCCCccceEEcCCCCCeeecccCCCCCCCCCCCCeECCCCCC
Confidence 57888765322 2333 588999999997655443223468999975
No 104
>1weu_A Inhibitor of growth family, member 4; structural genomics, PHD domain, ING1-like protein, DNA binding protein, NPPSFA; NMR {Mus musculus} SCOP: g.50.1.2
Probab=52.64 E-value=6.7 Score=32.60 Aligned_cols=44 Identities=25% Similarity=0.689 Sum_probs=28.1
Q ss_pred Ccccccccccccceee---c--cC-CcccHhHHHHHHhcCCCCCCCCcccccCC
Q 007807 336 DECAICREPMAKAKKL---L--CN-HLFHLACLRSWLDQGLNEMYSCPTCRKPL 383 (589)
Q Consensus 336 ~~C~IC~e~~~~~~~l---p--C~-H~Fh~~Cl~~Wl~~~~~~~~~CP~CR~~~ 383 (589)
..| ||..... ...+ . |. ..||..|+. +.......-.||.|+..-
T Consensus 37 ~yC-iC~~~~~-g~MI~CD~~dC~~~WfH~~CVg--l~~~p~g~W~Cp~C~~~~ 86 (91)
T 1weu_A 37 TYC-LCHQVSY-GEMIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQES 86 (91)
T ss_dssp BCS-TTCCBCC-SCCCCCSCSSCSCCCCCSTTTT--CSSCCCSSCCCTTTCCCC
T ss_pred cEE-ECCCCCC-CCEeEecCCCCCCCCEecccCC--cCcCCCCCEECcCccCcC
Confidence 456 9988643 2333 3 55 579999996 333222357899997643
No 105
>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A
Probab=52.43 E-value=4.2 Score=38.29 Aligned_cols=50 Identities=18% Similarity=0.458 Sum_probs=32.2
Q ss_pred CCcccccccccccce----ee---ccCCcccHhHHHH------HHhc-CCCCCCCCcccccCCc
Q 007807 335 DDECAICREPMAKAK----KL---LCNHLFHLACLRS------WLDQ-GLNEMYSCPTCRKPLF 384 (589)
Q Consensus 335 ~~~C~IC~e~~~~~~----~l---pC~H~Fh~~Cl~~------Wl~~-~~~~~~~CP~CR~~~~ 384 (589)
+..|+||...+.+.. .+ .|..-||..|+.- -+.. .......||.|+..-.
T Consensus 2 G~~CpiC~k~Y~~~~~~~~MIqCd~C~~W~H~~Cvgi~~~~~e~~~~~pe~~~y~Cp~C~~~~~ 65 (183)
T 3lqh_A 2 GNFCPLCDKCYDDDDYESKMMQCGKCDRWVHSKCENLSDEMYEILSNLPESVAYTCVNCTERHP 65 (183)
T ss_dssp CCBCTTTCCBCTTCCTTCCEEECTTTCCEEEGGGSSCCHHHHHHHHHSHHHHCCCCTTTCCSSS
T ss_pred cCcCCCCcCccCCcccCCCeEECCCCCcccchhccccCHHHHHHhhcCCCCCeeECcCCCCCCC
Confidence 357999998887653 33 5889999999731 1110 0001479999987543
No 106
>2yt5_A Metal-response element-binding transcription factor 2; zinc-regulated factor 1, ZIRF1, metal-response element DNA-binding protein M96; NMR {Mus musculus}
Probab=52.10 E-value=1.5 Score=33.84 Aligned_cols=52 Identities=21% Similarity=0.530 Sum_probs=33.5
Q ss_pred cCCCccccccccccc--ceee---ccCCcccHhHHHHHHhc---CCCCCCCCcccccCCc
Q 007807 333 AYDDECAICREPMAK--AKKL---LCNHLFHLACLRSWLDQ---GLNEMYSCPTCRKPLF 384 (589)
Q Consensus 333 ~~~~~C~IC~e~~~~--~~~l---pC~H~Fh~~Cl~~Wl~~---~~~~~~~CP~CR~~~~ 384 (589)
..+..|.||...... ...+ .|.-.||..|+..-+.. .....-.||.|+....
T Consensus 4 ~~~~~C~vC~~~~~~~~~~ll~Cd~C~~~~H~~C~~p~l~~~~~~p~~~W~C~~C~~~~~ 63 (66)
T 2yt5_A 4 GSSGVCTICQEEYSEAPNEMVICDKCGQGYHQLCHTPHIDSSVIDSDEKWLCRQCVFATT 63 (66)
T ss_dssp CCCCCBSSSCCCCCBTTBCEEECSSSCCEEETTTSSSCCCHHHHHSSCCCCCHHHHHTTS
T ss_pred CCCCCCCCCCCCCCCCCCCEEECCCCChHHHhhhCCCcccccccCCCCCEECCCCcCccc
Confidence 356789999976432 3333 68899999998753321 0112578999976543
No 107
>3shb_A E3 ubiquitin-protein ligase UHRF1; unmodified histone, methylation, UHRF1, PHD, ligase-NUCL protein complex; 1.80A {Homo sapiens}
Probab=50.55 E-value=2.7 Score=33.87 Aligned_cols=45 Identities=33% Similarity=0.742 Sum_probs=28.1
Q ss_pred cccccccccccceee---ccCCcccHhHHHHHHhcCCCCC-CCCccccc
Q 007807 337 ECAICREPMAKAKKL---LCNHLFHLACLRSWLDQGLNEM-YSCPTCRK 381 (589)
Q Consensus 337 ~C~IC~e~~~~~~~l---pC~H~Fh~~Cl~~Wl~~~~~~~-~~CP~CR~ 381 (589)
.|.+|...-+....+ .|...||..|+..-+....... -.||.|+.
T Consensus 28 ~C~vC~~~~d~~~ll~CD~C~~~yH~~Cl~PpL~~~P~g~~W~C~~C~~ 76 (77)
T 3shb_A 28 ACHLCGGRQDPDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 76 (77)
T ss_dssp SBTTTCCCSCGGGEEECTTTCCEEETTTSSSCCSSCCSSSCCCCTTTC-
T ss_pred cCCccCCCCCCcceeEeCCCCCccCcccCCCcccCCCCCCceECcCccc
Confidence 455665544434444 5789999999986555432223 58999975
No 108
>3ask_A E3 ubiquitin-protein ligase UHRF1; histone reader modules, epigenetic regulation, trimethylaion of lysine residue, ligase-DNA binding protein; HET: M3L; 2.90A {Homo sapiens}
Probab=50.35 E-value=3.6 Score=40.05 Aligned_cols=45 Identities=33% Similarity=0.750 Sum_probs=26.0
Q ss_pred cccccccccccceee---ccCCcccHhHHHHHHhcCCCC-CCCCccccc
Q 007807 337 ECAICREPMAKAKKL---LCNHLFHLACLRSWLDQGLNE-MYSCPTCRK 381 (589)
Q Consensus 337 ~C~IC~e~~~~~~~l---pC~H~Fh~~Cl~~Wl~~~~~~-~~~CP~CR~ 381 (589)
.|.+|...-.....+ .|...||..|+..=+..-... .-.||.|+.
T Consensus 176 ~C~vC~~~~~~~~lL~CD~C~~~yH~~CL~PPL~~vP~G~~W~Cp~C~~ 224 (226)
T 3ask_A 176 ACHLCGGRQDPDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 224 (226)
T ss_dssp SCSSSCCCCC--CCEECSSSCCEECSCC--CCCCSCCSSSCCCCGGGC-
T ss_pred CCcCCCCCCCCCCeEEcCCCCcceeCccCCCCcccCCCCCCCCCcCCcC
Confidence 577787543333333 688999999998655432222 357999975
No 109
>3asl_A E3 ubiquitin-protein ligase UHRF1; histone reader module, epigenetic regulation, LI binding protein complex; 1.41A {Homo sapiens} PDB: 3sou_A 3sow_A* 3sox_A 3zvy_A 2lgg_A 2lgk_A* 2lgl_A 3t6r_A 3zvz_B
Probab=50.04 E-value=3.8 Score=32.29 Aligned_cols=45 Identities=33% Similarity=0.750 Sum_probs=28.4
Q ss_pred cccccccccccceee---ccCCcccHhHHHHHHhcCCCC-CCCCccccc
Q 007807 337 ECAICREPMAKAKKL---LCNHLFHLACLRSWLDQGLNE-MYSCPTCRK 381 (589)
Q Consensus 337 ~C~IC~e~~~~~~~l---pC~H~Fh~~Cl~~Wl~~~~~~-~~~CP~CR~ 381 (589)
.|.+|...-.....+ .|...||..|+..=+.+.... .-.||.|+.
T Consensus 20 ~C~~C~~~~~~~~ll~CD~C~~~yH~~Cl~Ppl~~~P~g~~W~C~~C~~ 68 (70)
T 3asl_A 20 ACHLCGGRQDPDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 68 (70)
T ss_dssp SBTTTCCCSCGGGEEECTTTCCEEEGGGSSSCCSSCCSSSCCCCTTTSC
T ss_pred CCcCCCCcCCCCCEEEcCCCCCceecccCCCCcCCCCCCCCcCCcCccC
Confidence 456776543334444 588999999997544432222 458999975
No 110
>2e6s_A E3 ubiquitin-protein ligase UHRF2; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=49.77 E-value=3.7 Score=33.05 Aligned_cols=46 Identities=30% Similarity=0.726 Sum_probs=29.6
Q ss_pred Ccccccccccccceee---ccCCcccHhHHHHHHhcCCCC-CCCCccccc
Q 007807 336 DECAICREPMAKAKKL---LCNHLFHLACLRSWLDQGLNE-MYSCPTCRK 381 (589)
Q Consensus 336 ~~C~IC~e~~~~~~~l---pC~H~Fh~~Cl~~Wl~~~~~~-~~~CP~CR~ 381 (589)
..|.||...-.....+ .|...||..|+..=+.+.... .-.||.|+.
T Consensus 27 c~C~vC~~~~~~~~ll~CD~C~~~yH~~Cl~Ppl~~~P~g~~W~C~~C~~ 76 (77)
T 2e6s_A 27 CSCRVCGGKHEPNMQLLCDECNVAYHIYCLNPPLDKVPEEEYWYCPSCKT 76 (77)
T ss_dssp SSCSSSCCCCCSTTEEECSSSCCEEETTSSSSCCSSCCCSSCCCCTTTCC
T ss_pred CCCcCcCCcCCCCCEEEcCCCCccccccccCCCccCCCCCCCcCCcCccC
Confidence 3678888643333344 688999999997544432222 357999864
No 111
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=48.06 E-value=18 Score=31.61 Aligned_cols=27 Identities=19% Similarity=0.624 Sum_probs=21.5
Q ss_pred Cccccccccccccee----eccCCcccHhHH
Q 007807 336 DECAICREPMAKAKK----LLCNHLFHLACL 362 (589)
Q Consensus 336 ~~C~IC~e~~~~~~~----lpC~H~Fh~~Cl 362 (589)
..|.+|...|....+ -.||++||..|.
T Consensus 70 ~~C~~C~~~Fs~~~RrHHCR~CG~vfC~~Cs 100 (125)
T 1joc_A 70 QNCMACGKGFSVTVRRHHCRQCGNIFCAECS 100 (125)
T ss_dssp CBCTTTCCBCCSSSCCEECTTTCCEECGGGS
T ss_pred CCCcCcCCccccccccccCCCCCeEEChHHh
Confidence 479999999875422 279999999995
No 112
>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: g.50.1.1
Probab=47.54 E-value=9.9 Score=33.87 Aligned_cols=30 Identities=17% Similarity=0.319 Sum_probs=19.9
Q ss_pred cCCCccccccccccc--c---eeeccCCcccHhHH
Q 007807 333 AYDDECAICREPMAK--A---KKLLCNHLFHLACL 362 (589)
Q Consensus 333 ~~~~~C~IC~e~~~~--~---~~lpC~H~Fh~~Cl 362 (589)
..+..|.+|..++.- . .-..|+|.+|..|-
T Consensus 53 ~~~~~C~~C~~~~g~l~~~g~~C~~C~~~VC~~C~ 87 (134)
T 1zbd_B 53 DGVNRCILCGEQLGMLGSASVVCEDCKKNVCTKCG 87 (134)
T ss_dssp CSSSBCSSSCCBCSTTSCCEEECTTTCCEEETTSE
T ss_pred CCCccccccCCCcccccCCCCCCCCCCcccccccC
Confidence 356789999999842 1 22367777777663
No 113
>2i50_A Ubiquitin carboxyl-terminal hydrolase 16; alpha/beta zinc-finger, ring-finger, ZNF-UBP, metalloprotein, ubiquitin-binding protein, USP; NMR {Homo sapiens}
Probab=46.80 E-value=0.94 Score=40.16 Aligned_cols=92 Identities=12% Similarity=0.104 Sum_probs=54.8
Q ss_pred eeccCCcccHhHHHHHHhcC-CCCCCCCcccccCCcCCCcccccCCCCCCCCchHHH-----HhhhhcCCCC-CCCCC-C
Q 007807 350 KLLCNHLFHLACLRSWLDQG-LNEMYSCPTCRKPLFVGRREIEANSRPGEVSSDEQL-----ARQLSMGLDR-QNNTG-Q 421 (589)
Q Consensus 350 ~lpC~H~Fh~~Cl~~Wl~~~-~~~~~~CP~CR~~~~~~~~~~~~~~~~~~~~~~e~~-----~~~~~~g~~~-~~~~~-~ 421 (589)
..+|.|+++..++..|-..- ......|+.|+..-... .....++...+++ ++..+++++. .+|+. |
T Consensus 4 ~~~C~H~~~~~~l~~~~~~~~~~~~~~C~~C~~~~~~~------~~~~~~~~~~~~Lw~CL~CG~vgCgr~~~~~Ha~~H 77 (126)
T 2i50_A 4 MPVCRHIRKGLEQGNLKKALVNVEWNICQDCKTDNKVK------DKAEEETEEKPSVWLCLKCGHQGCGRNSQEQHALKH 77 (126)
T ss_dssp -CCCSCHHHHCCHHHHHHHHSSCCSSSCHHHHTCTTSS------CSSCTTTCCCCCEEEETTTCCEEECTTSSSCHHHHH
T ss_pred CCCCcChhhccccccccccccCCCCCcCcccccccccc------ccccccccccccceeeeeCCccccCCCCcchHHHHH
Confidence 45799999999998876431 11125799998752211 0111122222322 7778888874 35554 5
Q ss_pred CC----CCCCCCCCCCCCCCCCCCCCCCCCCCccc
Q 007807 422 TL----PTGVFPNQTQPPVEGSPWRNAGLDSSWLH 452 (589)
Q Consensus 422 ~~----~~~~~p~~~~~~~~~~~wr~~G~~~sw~~ 452 (589)
+. +.|+......+ .++|.|+. +.+++
T Consensus 78 ~~~~~~t~H~l~~~l~t---~~vwCY~c--d~~V~ 107 (126)
T 2i50_A 78 YLTPRSEPHCLVLSLDN---WSVWCYVC--DNEVQ 107 (126)
T ss_dssp HHSCCSSCCCEEEETTT---CCEEETTT--TEEEC
T ss_pred HhCcCCCCCcEEEECCC---CeEEeCCC--CcEEE
Confidence 44 35666666653 46999998 77775
No 114
>2vnf_A ING 4, P29ING4, inhibitor of growth protein 4; acetylation, alternative splicing, anti-oncogene, cell cycle, coiled C nucleus, zinc, zinc-finger, ING4; HET: M3L; 1.76A {Homo sapiens} SCOP: g.50.1.2 PDB: 2k1j_A 2jmq_A 2qic_A*
Probab=44.58 E-value=4.4 Score=30.86 Aligned_cols=43 Identities=26% Similarity=0.709 Sum_probs=27.4
Q ss_pred CCcccccccccccceeec-----cC-CcccHhHHHHHHhcCCCCCCCCccccc
Q 007807 335 DDECAICREPMAKAKKLL-----CN-HLFHLACLRSWLDQGLNEMYSCPTCRK 381 (589)
Q Consensus 335 ~~~C~IC~e~~~~~~~lp-----C~-H~Fh~~Cl~~Wl~~~~~~~~~CP~CR~ 381 (589)
...| ||...-. ...+- |. ..||..|+. +.......-.||.|+.
T Consensus 10 ~~~C-~C~~~~~-g~mi~CD~cdC~~~wfH~~Cvg--l~~~p~g~w~C~~C~~ 58 (60)
T 2vnf_A 10 PTYC-LCHQVSY-GEMIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQ 58 (60)
T ss_dssp CEET-TTTEECC-SEEEECSCTTCSSCEEETGGGT--CSSCCSSCCCCHHHHC
T ss_pred CCEE-ECCCcCC-CCEEEeCCCCCCCceEehhcCC--CCcCCCCCEECcCccC
Confidence 3456 8988643 34443 54 579999996 4433223578999964
No 115
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=44.46 E-value=25 Score=28.98 Aligned_cols=48 Identities=19% Similarity=0.393 Sum_probs=34.2
Q ss_pred CCCcccccccccccc----ee---eccCCcccHhHHHHHHhcCCCCCCCCcccccCCc
Q 007807 334 YDDECAICREPMAKA----KK---LLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLF 384 (589)
Q Consensus 334 ~~~~C~IC~e~~~~~----~~---lpC~H~Fh~~Cl~~Wl~~~~~~~~~CP~CR~~~~ 384 (589)
....|.||-++.... .. -.|+---|+.|.+-=...+ ++.||.|+....
T Consensus 15 ~~qiCqiCGD~VG~~~~Ge~FVAC~eC~FPvCrpCyEYErkeG---~q~CpqCktrYk 69 (93)
T 1weo_A 15 DGQFCEICGDQIGLTVEGDLFVACNECGFPACRPCYEYERREG---TQNCPQCKTRYK 69 (93)
T ss_dssp SSCBCSSSCCBCCBCSSSSBCCSCSSSCCCCCHHHHHHHHHTS---CSSCTTTCCCCC
T ss_pred CCCccccccCccccCCCCCEEEeeeccCChhhHHHHHHHHhcc---CccccccCCccc
Confidence 346899999986422 11 2577778999997555444 789999988764
No 116
>3ql9_A Transcriptional regulator ATRX; zinc finger, transcription, lysine trimethylation, protein, histone-binding protein, transcription-structural complex; HET: M3L; 0.93A {Homo sapiens} PDB: 3qla_A* 3qlc_A 3qln_A 2jm1_A
Probab=44.26 E-value=14 Score=32.70 Aligned_cols=50 Identities=22% Similarity=0.453 Sum_probs=32.3
Q ss_pred cCCCcccccccccccceeeccCCcccHhHHHHH-----Hhc--CCCCCCCCcccccC
Q 007807 333 AYDDECAICREPMAKAKKLLCNHLFHLACLRSW-----LDQ--GLNEMYSCPTCRKP 382 (589)
Q Consensus 333 ~~~~~C~IC~e~~~~~~~lpC~H~Fh~~Cl~~W-----l~~--~~~~~~~CP~CR~~ 382 (589)
.+++.|.+|.+.-+-.---.|-..||..||..- +.+ .....-.|+.|+.+
T Consensus 55 g~~~~C~vC~dGG~LlcCd~Cpr~Fc~~Cl~~~lg~~~l~~i~~~~~~W~C~~C~~~ 111 (129)
T 3ql9_A 55 GMDEQCRWCAEGGNLICCDFCHNAFCKKCILRNLGRRELSTIMDENNQWYCYICHPE 111 (129)
T ss_dssp SCBSSCTTTCCCSEEEECSSSSCEEEHHHHHHHTCHHHHHHHTCTTSCCCCTTTCCG
T ss_pred CCCCcCeecCCCCeeEecCCCchhhhHHHhCCCcchhHHHHhccCCCCeEcCCcCCH
Confidence 456789999876332111268899999999864 211 11225789999653
No 117
>3c6w_A P28ING5, inhibitor of growth protein 5; chromatin, PHD, ING, epigenetics, alternative splicing, metal-binding, phosphoprotein, zinc; HET: M3L; 1.75A {Homo sapiens} PDB: 2pnx_A*
Probab=42.05 E-value=5.1 Score=30.41 Aligned_cols=43 Identities=26% Similarity=0.702 Sum_probs=27.5
Q ss_pred CCcccccccccccceee---c--cC-CcccHhHHHHHHhcCCCCCCCCccccc
Q 007807 335 DDECAICREPMAKAKKL---L--CN-HLFHLACLRSWLDQGLNEMYSCPTCRK 381 (589)
Q Consensus 335 ~~~C~IC~e~~~~~~~l---p--C~-H~Fh~~Cl~~Wl~~~~~~~~~CP~CR~ 381 (589)
+..| +|.+... ...+ . |. .-||..|+. +.......-.||.|+.
T Consensus 9 ~~yC-~C~~~~~-g~mi~CD~~~C~~~wfH~~Cvg--l~~~p~~~w~Cp~C~~ 57 (59)
T 3c6w_A 9 PTYC-LCHQVSY-GEMIGCDNPDCPIEWFHFACVD--LTTKPKGKWFCPRCVQ 57 (59)
T ss_dssp CEET-TTTEECC-SEEEECSCTTCSSCEEETGGGT--CSSCCSSCCCCHHHHC
T ss_pred CcEE-ECCCCCC-CCeeEeeCCCCCCCCEecccCC--cccCCCCCEECcCccC
Confidence 3456 9988643 3344 3 65 589999996 3332223578999965
No 118
>3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=40.11 E-value=23 Score=36.86 Aligned_cols=51 Identities=22% Similarity=0.416 Sum_probs=33.9
Q ss_pred CCcccccccccccceee-ccCCcccHhHHHHHHhcC-CCCCCCCcccccCCcCC
Q 007807 335 DDECAICREPMAKAKKL-LCNHLFHLACLRSWLDQG-LNEMYSCPTCRKPLFVG 386 (589)
Q Consensus 335 ~~~C~IC~e~~~~~~~l-pC~H~Fh~~Cl~~Wl~~~-~~~~~~CP~CR~~~~~~ 386 (589)
...|++-...+..|.+- .|.|.-|.+- ..|++.. ....-.||+|.+.+...
T Consensus 249 SL~CPlS~~ri~~PvRg~~C~HlQCFDl-~sfL~~~~~~~~W~CPIC~k~~~~~ 301 (371)
T 3i2d_A 249 SLQCPISYTRMKYPSKSINCKHLQCFDA-LWFLHSQLQIPTWQCPVCQIDIALE 301 (371)
T ss_dssp ESBCTTTSSBCSSEEEETTCCSSCCEEH-HHHHHHHHHSCCCBCTTTCCBCCGG
T ss_pred eecCCCccccccccCcCCcCCCcceECH-HHHHHHhhcCCceeCCCCCcccCHH
Confidence 46899999999988664 7999854432 3344221 01257899998877543
No 119
>4gne_A Histone-lysine N-methyltransferase NSD3; zinc finger, transcription, nuclear protein, transf nuclear protein complex; 1.47A {Homo sapiens} PDB: 4gnd_A 4gnf_A 4gng_A*
Probab=39.66 E-value=13 Score=31.83 Aligned_cols=49 Identities=24% Similarity=0.473 Sum_probs=32.1
Q ss_pred cCCCcccccccccccceee-----ccCCcccHhHHHHHHhcCCCCCCCCcccccCCcCC
Q 007807 333 AYDDECAICREPMAKAKKL-----LCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFVG 386 (589)
Q Consensus 333 ~~~~~C~IC~e~~~~~~~l-----pC~H~Fh~~Cl~~Wl~~~~~~~~~CP~CR~~~~~~ 386 (589)
..++.|.+|.+. ...+ .|...||..|+. +.+.....-.||.|+-.+..+
T Consensus 13 ~~~~~C~~C~~~---G~ll~CD~~~Cp~~fH~~Cl~--L~~~P~g~W~Cp~c~C~~C~k 66 (107)
T 4gne_A 13 MHEDYCFQCGDG---GELVMCDKKDCPKAYHLLCLN--LTQPPYGKWECPWHQCDECSS 66 (107)
T ss_dssp SSCSSCTTTCCC---SEEEECCSTTCCCEECTGGGT--CSSCCSSCCCCGGGBCTTTCS
T ss_pred CCCCCCCcCCCC---CcEeEECCCCCCcccccccCc--CCcCCCCCEECCCCCCCcCCC
Confidence 456789999853 2333 377899999997 443222245799887665543
No 120
>2dar_A PDZ and LIM domain protein 5; enigma homolog protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=39.04 E-value=17 Score=29.30 Aligned_cols=40 Identities=15% Similarity=0.409 Sum_probs=32.1
Q ss_pred CCCcccccccccccceeeccCCcccHhHHHHHHhcCCCCCCCCcccccCCcC
Q 007807 334 YDDECAICREPMAKAKKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFV 385 (589)
Q Consensus 334 ~~~~C~IC~e~~~~~~~lpC~H~Fh~~Cl~~Wl~~~~~~~~~CP~CR~~~~~ 385 (589)
....|..|.+.+.......-+..||..| ..|-.|+.++..
T Consensus 24 ~~~~C~~C~~~I~~~~v~a~~~~~H~~C------------F~C~~C~~~L~~ 63 (90)
T 2dar_A 24 RTPMCAHCNQVIRGPFLVALGKSWHPEE------------FNCAHCKNTMAY 63 (90)
T ss_dssp CCCBBSSSCCBCCSCEEEETTEEECTTT------------CBCSSSCCBCSS
T ss_pred CCCCCccCCCEecceEEEECCccccccC------------CccCCCCCCCCC
Confidence 3467999999987655567889999988 489999988864
No 121
>2jmi_A Protein YNG1, ING1 homolog 1; PHD, histone, recognition, yeast, protein binding; NMR {Saccharomyces cerevisiae} PDB: 2jmj_A*
Probab=38.36 E-value=7.5 Score=32.27 Aligned_cols=44 Identities=25% Similarity=0.637 Sum_probs=26.6
Q ss_pred CCCcccccccccccceee---c--cC-CcccHhHHHHHHhcCCCCCCCCcc-ccc
Q 007807 334 YDDECAICREPMAKAKKL---L--CN-HLFHLACLRSWLDQGLNEMYSCPT-CRK 381 (589)
Q Consensus 334 ~~~~C~IC~e~~~~~~~l---p--C~-H~Fh~~Cl~~Wl~~~~~~~~~CP~-CR~ 381 (589)
....| ||...... ..+ . |. .-||..|+. +.......-.||. |+.
T Consensus 25 ~~~yC-iC~~~~~g-~MI~CD~c~C~~eWfH~~CVg--l~~~p~~~W~Cp~cC~~ 75 (90)
T 2jmi_A 25 EEVYC-FCRNVSYG-PMVACDNPACPFEWFHYGCVG--LKQAPKGKWYCSKDCKE 75 (90)
T ss_dssp CSCCS-TTTCCCSS-SEECCCSSSCSCSCEETTTSS--CSSCTTSCCCSSHHHHH
T ss_pred CCcEE-EeCCCCCC-CEEEecCCCCccccCcCccCC--CCcCCCCCccCChhhcc
Confidence 34467 99875332 233 3 33 579999985 3322223578999 974
No 122
>1x62_A C-terminal LIM domain protein 1; PDZ and LIM domain protein 1, LIM domain protein CLP-36, contractIle protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=38.17 E-value=16 Score=28.66 Aligned_cols=38 Identities=21% Similarity=0.364 Sum_probs=30.6
Q ss_pred CCcccccccccccceeeccCCcccHhHHHHHHhcCCCCCCCCcccccCCc
Q 007807 335 DDECAICREPMAKAKKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLF 384 (589)
Q Consensus 335 ~~~C~IC~e~~~~~~~lpC~H~Fh~~Cl~~Wl~~~~~~~~~CP~CR~~~~ 384 (589)
...|..|.+.+.......-+..||..|. .|-.|+..+.
T Consensus 15 ~~~C~~C~~~I~~~~~~a~~~~~H~~CF------------~C~~C~~~L~ 52 (79)
T 1x62_A 15 LPMCDKCGTGIVGVFVKLRDRHRHPECY------------VCTDCGTNLK 52 (79)
T ss_dssp CCCCSSSCCCCCSSCEECSSCEECTTTT------------SCSSSCCCHH
T ss_pred CCccccCCCCccCcEEEECcceeCcCcC------------eeCCCCCCCC
Confidence 4689999998876555567899999984 7999988875
No 123
>2d8z_A Four and A half LIM domains 2; skeletal muscle LIM-protein 3, LIM-domain protein DRAL, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=37.32 E-value=21 Score=27.06 Aligned_cols=39 Identities=26% Similarity=0.705 Sum_probs=30.7
Q ss_pred CCcccccccccccceeeccCCcccHhHHHHHHhcCCCCCCCCcccccCCcC
Q 007807 335 DDECAICREPMAKAKKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFV 385 (589)
Q Consensus 335 ~~~C~IC~e~~~~~~~lpC~H~Fh~~Cl~~Wl~~~~~~~~~CP~CR~~~~~ 385 (589)
...|..|.+.+.......-+..||..| ..|-.|+.++..
T Consensus 5 ~~~C~~C~~~I~~~~~~a~~~~~H~~C------------F~C~~C~~~L~~ 43 (70)
T 2d8z_A 5 SSGCVQCKKPITTGGVTYREQPWHKEC------------FVCTACRKQLSG 43 (70)
T ss_dssp CCBCSSSCCBCCSSEEESSSSEEETTT------------SBCSSSCCBCTT
T ss_pred CCCCcccCCeeccceEEECccccCCCC------------CccCCCCCcCCc
Confidence 457999999887655556788999988 479999988753
No 124
>2d8x_A Protein pinch; LIM domain, pinch protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=36.76 E-value=21 Score=27.07 Aligned_cols=40 Identities=23% Similarity=0.452 Sum_probs=30.9
Q ss_pred CCcccccccccccceeeccCCcccHhHHHHHHhcCCCCCCCCcccccCCcCC
Q 007807 335 DDECAICREPMAKAKKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFVG 386 (589)
Q Consensus 335 ~~~C~IC~e~~~~~~~lpC~H~Fh~~Cl~~Wl~~~~~~~~~CP~CR~~~~~~ 386 (589)
...|..|.+.+.......-+..||.+| ..|-.|+.++...
T Consensus 5 ~~~C~~C~~~I~~~~~~a~~~~~H~~C------------F~C~~C~~~L~~~ 44 (70)
T 2d8x_A 5 SSGCHQCGEFIIGRVIKAMNNSWHPEC------------FRCDLCQEVLADI 44 (70)
T ss_dssp SSBCSSSCCBCCSCCEEETTEEECTTT------------SBCSSSCCBCSSS
T ss_pred CCcCccCCCEecceEEEECcccccccC------------CEeCCCCCcCCCC
Confidence 457999999887655556788999988 4799999887653
No 125
>1x64_A Alpha-actinin-2 associated LIM protein; LIM domain, PDZ and LIM domain 3, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=36.12 E-value=27 Score=27.98 Aligned_cols=41 Identities=20% Similarity=0.347 Sum_probs=32.0
Q ss_pred CCCcccccccccccceeeccCCcccHhHHHHHHhcCCCCCCCCcccccCCcCC
Q 007807 334 YDDECAICREPMAKAKKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFVG 386 (589)
Q Consensus 334 ~~~~C~IC~e~~~~~~~lpC~H~Fh~~Cl~~Wl~~~~~~~~~CP~CR~~~~~~ 386 (589)
....|..|.+.+.......-+..||..| ..|-.|+..+...
T Consensus 24 ~~~~C~~C~~~I~~~~~~a~~~~~H~~C------------F~C~~C~~~L~~~ 64 (89)
T 1x64_A 24 RMPLCDKCGSGIVGAVVKARDKYRHPEC------------FVCADCNLNLKQK 64 (89)
T ss_dssp SCCBCTTTCCBCCSCCEESSSCEECTTT------------CCCSSSCCCTTTS
T ss_pred cCCCcccCCCEecccEEEECCceECccC------------CEecCCCCCCCCC
Confidence 3457999999887655556789999998 4799999888643
No 126
>2g6q_A Inhibitor of growth protein 2; protein-peptide complex, gene regulation, apoptosis; HET: M3L; 2.00A {Mus musculus}
Probab=35.45 E-value=7.4 Score=29.85 Aligned_cols=43 Identities=26% Similarity=0.718 Sum_probs=27.2
Q ss_pred CCcccccccccccceee---c--cC-CcccHhHHHHHHhcCCCCCCCCccccc
Q 007807 335 DDECAICREPMAKAKKL---L--CN-HLFHLACLRSWLDQGLNEMYSCPTCRK 381 (589)
Q Consensus 335 ~~~C~IC~e~~~~~~~l---p--C~-H~Fh~~Cl~~Wl~~~~~~~~~CP~CR~ 381 (589)
...| +|..... ...+ . |. .-||..|+. +.......-.||.|+.
T Consensus 11 ~~yC-~C~~~~~-g~MI~CD~c~C~~~WfH~~Cvg--l~~~p~~~w~Cp~C~~ 59 (62)
T 2g6q_A 11 PTYC-LCNQVSY-GEMIGCDNEQCPIEWFHFSCVS--LTYKPKGKWYCPKCRG 59 (62)
T ss_dssp CEET-TTTEECC-SEEEECSCTTCSSCEEETGGGT--CSSCCSSCCCCHHHHT
T ss_pred CcEE-ECCCCCC-CCeeeeeCCCCCcccEecccCC--cCcCCCCCEECcCccc
Confidence 3456 9988633 3344 3 55 789999986 3332223578999975
No 127
>2cu8_A Cysteine-rich protein 2; CRP2, CRIP2, ESP1 protein, zinc-binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=34.31 E-value=21 Score=27.69 Aligned_cols=39 Identities=26% Similarity=0.489 Sum_probs=30.4
Q ss_pred CCcccccccccccc-eeeccCCcccHhHHHHHHhcCCCCCCCCcccccCCcC
Q 007807 335 DDECAICREPMAKA-KKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFV 385 (589)
Q Consensus 335 ~~~C~IC~e~~~~~-~~lpC~H~Fh~~Cl~~Wl~~~~~~~~~CP~CR~~~~~ 385 (589)
...|+.|.+.+... ....-+..||..| ..|..|+.++..
T Consensus 9 ~~~C~~C~~~I~~~~~v~a~~~~~H~~C------------F~C~~C~~~L~~ 48 (76)
T 2cu8_A 9 ASKCPKCDKTVYFAEKVSSLGKDWHKFC------------LKCERCSKTLTP 48 (76)
T ss_dssp CCBCTTTCCBCCTTTEEEETTEEEETTT------------CBCSSSCCBCCT
T ss_pred CCCCcCCCCEeECCeEEEECCeEeeCCC------------CCCCCCCCccCC
Confidence 45799999988743 4446788999988 479999988864
No 128
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=34.28 E-value=5.3 Score=34.07 Aligned_cols=46 Identities=24% Similarity=0.581 Sum_probs=29.7
Q ss_pred cccccccccccceee---ccCCcccHhHHHHHHhcCCCCCCCCcccccC
Q 007807 337 ECAICREPMAKAKKL---LCNHLFHLACLRSWLDQGLNEMYSCPTCRKP 382 (589)
Q Consensus 337 ~C~IC~e~~~~~~~l---pC~H~Fh~~Cl~~Wl~~~~~~~~~CP~CR~~ 382 (589)
.|.+|.+.-++...+ .|...||..|+..-+.......-.||.|+..
T Consensus 56 ~C~~C~~~~~~~~ll~Cd~C~~~yH~~Cl~ppl~~~P~g~W~C~~C~~c 104 (111)
T 2ysm_A 56 VCQNCKQSGEDSKMLVCDTCDKGYHTFCLQPVMKSVPTNGWKCKNCRIC 104 (111)
T ss_dssp CCTTTCCCSCCTTEEECSSSCCEEEGGGSSSCCSSCCSSCCCCHHHHCC
T ss_pred cccccCccCCCCCeeECCCCCcHHhHHhcCCccccCCCCCcCCcCCcCc
Confidence 466777665444444 6889999999975443322224679988654
No 129
>1vfy_A Phosphatidylinositol-3-phosphate binding FYVE domain of protein VPS27; endosome maturation, intracellular trafficking; 1.15A {Saccharomyces cerevisiae} SCOP: g.50.1.1
Probab=34.23 E-value=18 Score=28.41 Aligned_cols=28 Identities=21% Similarity=0.519 Sum_probs=21.9
Q ss_pred CCccccccccccccee----eccCCcccHhHH
Q 007807 335 DDECAICREPMAKAKK----LLCNHLFHLACL 362 (589)
Q Consensus 335 ~~~C~IC~e~~~~~~~----lpC~H~Fh~~Cl 362 (589)
+..|.+|...|..-.+ -.||++||..|.
T Consensus 11 ~~~C~~C~~~F~~~~RrHHCR~CG~v~C~~Cs 42 (73)
T 1vfy_A 11 SDACMICSKKFSLLNRKHHCRSCGGVFCQEHS 42 (73)
T ss_dssp CSBCTTTCCBCBTTBCCEECTTTCCEECGGGS
T ss_pred CCcccCCCCccCCccccccCCCCCEEEccccc
Confidence 3589999999875432 279999999995
No 130
>1wyh_A SLIM 2, skeletal muscle LIM-protein 2; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=33.98 E-value=26 Score=26.63 Aligned_cols=40 Identities=25% Similarity=0.606 Sum_probs=30.5
Q ss_pred CCcccccccccccc--eeeccCCcccHhHHHHHHhcCCCCCCCCcccccCCcCC
Q 007807 335 DDECAICREPMAKA--KKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFVG 386 (589)
Q Consensus 335 ~~~C~IC~e~~~~~--~~lpC~H~Fh~~Cl~~Wl~~~~~~~~~CP~CR~~~~~~ 386 (589)
...|..|.+.+... +...-+..||..| ..|-.|+.++...
T Consensus 5 ~~~C~~C~~~I~~~~~~~~a~~~~~H~~C------------F~C~~C~~~L~~~ 46 (72)
T 1wyh_A 5 SSGCSACGETVMPGSRKLEYGGQTWHEHC------------FLCSGCEQPLGSR 46 (72)
T ss_dssp CCBCSSSCCBCCSSSCEECSTTCCEETTT------------CBCTTTCCBTTTS
T ss_pred CCCCccCCCccccCccEEEECccccCccc------------CeECCCCCcCCCC
Confidence 45899999998843 3445788999988 4799998887643
No 131
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=33.96 E-value=30 Score=29.41 Aligned_cols=43 Identities=21% Similarity=0.487 Sum_probs=27.6
Q ss_pred CCcccccccccc-----cc-eee---ccCCcccHhHHHH------HHhcCCCCCCCCcccc
Q 007807 335 DDECAICREPMA-----KA-KKL---LCNHLFHLACLRS------WLDQGLNEMYSCPTCR 380 (589)
Q Consensus 335 ~~~C~IC~e~~~-----~~-~~l---pC~H~Fh~~Cl~~------Wl~~~~~~~~~CP~CR 380 (589)
...|.+|...-. .+ ..+ .|+..||..|+.. -+.+. .-.||.|+
T Consensus 5 ~~~C~~C~~~~~~~~~g~~~~Ll~C~~C~~~~H~~Cl~~~~~~~~~~~~~---~W~C~~C~ 62 (112)
T 3v43_A 5 IPICSFCLGTKEQNREKKPEELISCADCGNSGHPSCLKFSPELTVRVKAL---RWQCIECK 62 (112)
T ss_dssp CSSBTTTCCCTTCCTTSCCCCCEECTTTCCEECHHHHTCCHHHHHHHHTS---CCCCTTTC
T ss_pred CccccccCCchhhCcCCCchhceEhhhcCCCCCCchhcCCHHHHHHhhcc---ccccccCC
Confidence 467999987531 12 222 6999999999952 22232 46788885
No 132
>1wep_A PHF8; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: g.50.1.2
Probab=32.80 E-value=24 Score=28.06 Aligned_cols=48 Identities=27% Similarity=0.619 Sum_probs=29.7
Q ss_pred Cccccccccccc-ceee---ccCCcccHhHHHHHHh-cCCCCCCCCcccccCCc
Q 007807 336 DECAICREPMAK-AKKL---LCNHLFHLACLRSWLD-QGLNEMYSCPTCRKPLF 384 (589)
Q Consensus 336 ~~C~IC~e~~~~-~~~l---pC~H~Fh~~Cl~~Wl~-~~~~~~~~CP~CR~~~~ 384 (589)
..| ||..+.++ ...+ .|..-||..|+.--.. ........||.|+..-.
T Consensus 13 ~~C-~C~~~~d~~~~MIqCd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~~~~ 65 (79)
T 1wep_A 13 VYC-LCRQPYNVNHFMIECGLCQDWFHGSCVGIEEENAVDIDIYHCPDCEAVFG 65 (79)
T ss_dssp CCS-TTSCSCCSSSCEEEBTTTCCEEEHHHHTCCHHHHTTCSBBCCTTTTTTSC
T ss_pred cEE-EcCCccCCCCceEEcCCCCCcEEeeecCcccccccCCCeEECCCcccccC
Confidence 346 89887742 2223 5888999999842111 11112588999987643
No 133
>1nyp_A Pinch protein; LIM domain, protein recognition, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 PDB: 1u5s_B
Probab=32.38 E-value=23 Score=26.54 Aligned_cols=39 Identities=23% Similarity=0.601 Sum_probs=30.1
Q ss_pred CCcccccccccccceeeccCCcccHhHHHHHHhcCCCCCCCCcccccCCcC
Q 007807 335 DDECAICREPMAKAKKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFV 385 (589)
Q Consensus 335 ~~~C~IC~e~~~~~~~lpC~H~Fh~~Cl~~Wl~~~~~~~~~CP~CR~~~~~ 385 (589)
...|+.|.+.+.......-+..||..| ..|..|+.++..
T Consensus 5 ~~~C~~C~~~I~~~~~~a~~~~~H~~C------------F~C~~C~~~L~~ 43 (66)
T 1nyp_A 5 VPICGACRRPIEGRVVNAMGKQWHVEH------------FVCAKCEKPFLG 43 (66)
T ss_dssp CCEETTTTEECCSCEECCTTSBEETTT------------CBCTTTCCBCSS
T ss_pred CCCCcccCCEecceEEEECccccccCc------------CEECCCCCCCCC
Confidence 457999999887544446788999988 479999988754
No 134
>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82
Probab=32.37 E-value=21 Score=30.42 Aligned_cols=29 Identities=24% Similarity=0.550 Sum_probs=18.1
Q ss_pred ceeeccCCcccHhHHHHHHhcCCCCCCCCcccccCCcC
Q 007807 348 AKKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFV 385 (589)
Q Consensus 348 ~~~lpC~H~Fh~~Cl~~Wl~~~~~~~~~CP~CR~~~~~ 385 (589)
++...||+.|. ........||.|+..-..
T Consensus 68 ~~C~~CG~~F~---------~~~~kPsrCP~CkSe~Ie 96 (105)
T 2gmg_A 68 AQCRKCGFVFK---------AEINIPSRCPKCKSEWIE 96 (105)
T ss_dssp CBBTTTCCBCC---------CCSSCCSSCSSSCCCCBC
T ss_pred cChhhCcCeec---------ccCCCCCCCcCCCCCccC
Confidence 34457888881 111125799999886543
No 135
>1x4l_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=32.28 E-value=29 Score=26.43 Aligned_cols=39 Identities=23% Similarity=0.593 Sum_probs=29.8
Q ss_pred CCccccccccccc----ceeeccCCcccHhHHHHHHhcCCCCCCCCcccccCCcC
Q 007807 335 DDECAICREPMAK----AKKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFV 385 (589)
Q Consensus 335 ~~~C~IC~e~~~~----~~~lpC~H~Fh~~Cl~~Wl~~~~~~~~~CP~CR~~~~~ 385 (589)
...|..|-+.+.. .....-+..||..| ..|-.|+.++..
T Consensus 5 ~~~C~~C~~~I~~~~~~~~~~a~~~~wH~~C------------F~C~~C~~~L~~ 47 (72)
T 1x4l_A 5 SSGCAGCTNPISGLGGTKYISFEERQWHNDC------------FNCKKCSLSLVG 47 (72)
T ss_dssp SCSBTTTTBCCCCSSSCSCEECSSCEECTTT------------CBCSSSCCBCTT
T ss_pred CCCCcCCCccccCCCCcceEEECCcccCccc------------CEeccCCCcCCC
Confidence 4579999998874 33345789999988 479999988753
No 136
>2lv9_A Histone-lysine N-methyltransferase MLL5; zinc finger, transcription, protein binding, NESG, northeast structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=32.21 E-value=10 Score=31.78 Aligned_cols=43 Identities=21% Similarity=0.573 Sum_probs=28.9
Q ss_pred cccccccccccceee---ccCCcccHhHHHHHHhcCCCCCCCCccccc
Q 007807 337 ECAICREPMAKAKKL---LCNHLFHLACLRSWLDQGLNEMYSCPTCRK 381 (589)
Q Consensus 337 ~C~IC~e~~~~~~~l---pC~H~Fh~~Cl~~Wl~~~~~~~~~CP~CR~ 381 (589)
.| ||.........+ .|.-.||..|+..=... .+..-.||.|+.
T Consensus 30 rC-iC~~~~~~~~mi~Cd~C~~w~H~~C~~~~~~~-~p~~w~C~~C~~ 75 (98)
T 2lv9_A 30 RC-ICGFTHDDGYMICCDKCSVWQHIDCMGIDRQH-IPDTYLCERCQP 75 (98)
T ss_dssp CC-TTSCCSCSSCEEEBTTTCBEEETTTTTCCTTS-CCSSBCCTTTSS
T ss_pred Ee-ECCCccCCCcEEEcCCCCCcCcCcCCCCCccC-CCCCEECCCCcC
Confidence 57 787766555444 68899999998542221 223578999974
No 137
>2cur_A Skeletal muscle LIM-protein 1; four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=31.87 E-value=21 Score=26.97 Aligned_cols=38 Identities=24% Similarity=0.608 Sum_probs=29.7
Q ss_pred CCcccccccccccceeeccCCcccHhHHHHHHhcCCCCCCCCcccccCCc
Q 007807 335 DDECAICREPMAKAKKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLF 384 (589)
Q Consensus 335 ~~~C~IC~e~~~~~~~lpC~H~Fh~~Cl~~Wl~~~~~~~~~CP~CR~~~~ 384 (589)
.+.|+.|.+.........-+..||..|. .|..|+.++.
T Consensus 5 ~~~C~~C~~~I~~~~~~a~~~~~H~~CF------------~C~~C~~~L~ 42 (69)
T 2cur_A 5 SSGCVKCNKAITSGGITYQDQPWHADCF------------VCVTCSKKLA 42 (69)
T ss_dssp CCCCSSSCCCCCTTCEEETTEEECTTTT------------BCTTTCCBCT
T ss_pred cCCCcccCCEeCcceEEECccccccCcC------------EECCCCCCCC
Confidence 4579999998875545567888999884 7999998875
No 138
>1v6g_A Actin binding LIM protein 2; LIM domain, zinc binding domain, ablim2, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=31.65 E-value=30 Score=27.06 Aligned_cols=40 Identities=23% Similarity=0.588 Sum_probs=30.9
Q ss_pred CCcccccccccccceeeccCCcccHhHHHHHHhcCCCCCCCCcccccCCcCC
Q 007807 335 DDECAICREPMAKAKKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFVG 386 (589)
Q Consensus 335 ~~~C~IC~e~~~~~~~lpC~H~Fh~~Cl~~Wl~~~~~~~~~CP~CR~~~~~~ 386 (589)
...|+.|.+.........-+..||..| ..|-.|++++...
T Consensus 15 ~~~C~~C~~~I~~~~v~a~~~~wH~~C------------F~C~~C~~~L~~~ 54 (81)
T 1v6g_A 15 GTRCFSCDQFIEGEVVSALGKTYHPDC------------FVCAVCRLPFPPG 54 (81)
T ss_dssp CCBCTTTCCBCCSCCEEETTEEECTTT------------SSCSSSCCCCCSS
T ss_pred CCcCccccCEeccceEEECCceeCccC------------CccccCCCCCCCC
Confidence 458999999887544456788999988 4799999887643
No 139
>2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger, alpha-helical bundle, dimethyl-lysine, bromodom chromatin regulator, metal-binding, nucleus; HET: MLY; 1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A* 3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A*
Probab=31.54 E-value=9.2 Score=35.15 Aligned_cols=48 Identities=25% Similarity=0.653 Sum_probs=30.3
Q ss_pred CCCcccccccccccc-eee---ccCCcccHhHHHHHH-hcCCCCCCCCcccccC
Q 007807 334 YDDECAICREPMAKA-KKL---LCNHLFHLACLRSWL-DQGLNEMYSCPTCRKP 382 (589)
Q Consensus 334 ~~~~C~IC~e~~~~~-~~l---pC~H~Fh~~Cl~~Wl-~~~~~~~~~CP~CR~~ 382 (589)
.+..| +|....++. ..+ .|...||..|+.--. .......-.||.|+..
T Consensus 7 ~~~~C-~C~~~~~~~~~mi~Cd~C~~WfH~~Cv~~~~~~~~~~~~~~C~~C~~~ 59 (174)
T 2ri7_A 7 TKLYC-ICKTPEDESKFYIGCDRCQNWYHGRCVGILQSEAELIDEYVCPQCQST 59 (174)
T ss_dssp CCEET-TTTEECCTTSCEEECTTTCCEEEHHHHTCCHHHHTTCSSCCCHHHHHH
T ss_pred CCcEe-eCCCCCCCCCCEeECCCCCchhChhhcCCchhhccCccCeecCCCcch
Confidence 34568 999876533 223 688999999984211 1111225789999864
No 140
>1wig_A KIAA1808 protein; LIM domain, zinc finger, metal-binding protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=31.28 E-value=29 Score=26.81 Aligned_cols=39 Identities=15% Similarity=0.384 Sum_probs=30.7
Q ss_pred CCcccccccccccceeeccCCcccHhHHHHHHhcCCCCCCCCcccccCCcC
Q 007807 335 DDECAICREPMAKAKKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFV 385 (589)
Q Consensus 335 ~~~C~IC~e~~~~~~~lpC~H~Fh~~Cl~~Wl~~~~~~~~~CP~CR~~~~~ 385 (589)
...|+-|.+.+.......-+..||.+| ..|-.|+.++..
T Consensus 5 ~~~C~~C~~~I~~~~v~a~~~~wH~~C------------F~C~~C~~~L~~ 43 (73)
T 1wig_A 5 SSGCDSCEKYITGRVLEAGEKHYHPSC------------ALCVRCGQMFAE 43 (73)
T ss_dssp CCSCSSSCCCCSSCCBCCSSCCBCTTT------------SCCSSSCCCCCS
T ss_pred cCCcccCCCEecCeeEEeCCCCCCCCc------------CEeCCCCCCCCC
Confidence 457999999887655556788999988 479999988863
No 141
>1x68_A FHL5 protein; four-and-A-half LIM protein 5, zinc finger domain, AN actin- interacting protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=30.92 E-value=25 Score=27.19 Aligned_cols=38 Identities=21% Similarity=0.662 Sum_probs=29.8
Q ss_pred CCccccccccccc----ceeeccCCcccHhHHHHHHhcCCCCCCCCcccccCCc
Q 007807 335 DDECAICREPMAK----AKKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLF 384 (589)
Q Consensus 335 ~~~C~IC~e~~~~----~~~lpC~H~Fh~~Cl~~Wl~~~~~~~~~CP~CR~~~~ 384 (589)
.+.|+.|.+.+.. .....-+..||..| ..|-.|+.++.
T Consensus 5 ~~~C~~C~~~I~~~g~~~~~~a~~~~wH~~C------------F~C~~C~~~L~ 46 (76)
T 1x68_A 5 SSGCVACSKPISGLTGAKFICFQDSQWHSEC------------FNCGKCSVSLV 46 (76)
T ss_dssp CCCCTTTCCCCCTTTTCCEEEETTEEEEGGG------------CBCTTTCCBCS
T ss_pred CCCCccCCCcccCCCCceeEEECCcccCccc------------CChhhCCCcCC
Confidence 4579999998875 34446788999999 47999988875
No 142
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=30.72 E-value=13 Score=31.83 Aligned_cols=42 Identities=19% Similarity=0.441 Sum_probs=27.0
Q ss_pred Cccccccccccc------c-eee---ccCCcccHhHHHHH------HhcCCCCCCCCcccc
Q 007807 336 DECAICREPMAK------A-KKL---LCNHLFHLACLRSW------LDQGLNEMYSCPTCR 380 (589)
Q Consensus 336 ~~C~IC~e~~~~------~-~~l---pC~H~Fh~~Cl~~W------l~~~~~~~~~CP~CR 380 (589)
+.|.+|+..-.. + ..+ .|+..||..|+... .... .-.||.|+
T Consensus 2 ~~C~~C~~~~~~n~k~g~~~~Li~C~~C~~~~H~~Cl~~~~~~~~~~~~~---~W~C~~C~ 59 (114)
T 2kwj_A 2 SYCDFCLGGSNMNKKSGRPEELVSCADCGRSGHPTCLQFTLNMTEAVKTY---KWQCIECK 59 (114)
T ss_dssp CCCSSSCCBTTBCTTTCCCCCCEECSSSCCEECTTTTTCCHHHHHHHHHT---TCCCGGGC
T ss_pred CcCccCCCCccccccCCCCCCCeEeCCCCCccchhhCCChhhhhhccCCC---ccCccccC
Confidence 579999875411 1 122 68999999998643 2222 45788774
No 143
>1x6a_A LIMK-2, LIM domain kinase 2; LIM-kinase 2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=30.18 E-value=32 Score=26.85 Aligned_cols=39 Identities=18% Similarity=0.437 Sum_probs=30.6
Q ss_pred CCcccccccccccceeeccCCcccHhHHHHHHhcCCCCCCCCcccccCCcC
Q 007807 335 DDECAICREPMAKAKKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFV 385 (589)
Q Consensus 335 ~~~C~IC~e~~~~~~~lpC~H~Fh~~Cl~~Wl~~~~~~~~~CP~CR~~~~~ 385 (589)
...|+.|.+.+.......-+..||..| ..|-.|+.++..
T Consensus 15 ~~~C~~C~~~I~~~~~~a~~~~~H~~C------------F~C~~C~~~L~~ 53 (81)
T 1x6a_A 15 GEFCHGCSLLMTGPFMVAGEFKYHPEC------------FACMSCKVIIED 53 (81)
T ss_dssp SCBCTTTCCBCCSCCBCCTTCCBCTTS------------CBCTTTCCBCCT
T ss_pred CCcCccCCCCcCceEEEECCceecccc------------CCccCCCCccCC
Confidence 457999999888555456788999988 479999988864
No 144
>2cor_A Pinch protein; LIM domain, particularly interesting NEW Cys- His protein, LIM and senescent cell antigen-like domains 1, structural genomics; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=29.85 E-value=30 Score=27.17 Aligned_cols=40 Identities=20% Similarity=0.491 Sum_probs=31.3
Q ss_pred CCcccccccccccceeeccCCcccHhHHHHHHhcCCCCCCCCcccccCCcCC
Q 007807 335 DDECAICREPMAKAKKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFVG 386 (589)
Q Consensus 335 ~~~C~IC~e~~~~~~~lpC~H~Fh~~Cl~~Wl~~~~~~~~~CP~CR~~~~~~ 386 (589)
...|+-|.+.+.......-+..||..| ..|-.|+.++...
T Consensus 15 ~~~C~~C~~~I~~~~v~a~~~~~H~~C------------F~C~~C~~~L~~~ 54 (79)
T 2cor_A 15 KYICQKCHAIIDEQPLIFKNDPYHPDH------------FNCANCGKELTAD 54 (79)
T ss_dssp CCBCTTTCCBCCSCCCCCSSSCCCTTT------------SBCSSSCCBCCTT
T ss_pred CCCCccCCCEecceEEEECcceeCCCC------------CEeCCCCCccCCC
Confidence 468999999887554456788999988 4899999887643
No 145
>2o35_A Hypothetical protein DUF1244; helix bundle, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.12A {Sinorhizobium meliloti} SCOP: a.293.1.1
Probab=29.61 E-value=20 Score=30.14 Aligned_cols=12 Identities=33% Similarity=0.971 Sum_probs=10.9
Q ss_pred ccHhHHHHHHhc
Q 007807 357 FHLACLRSWLDQ 368 (589)
Q Consensus 357 Fh~~Cl~~Wl~~ 368 (589)
||+.||..|...
T Consensus 43 FCRNCLskWy~~ 54 (105)
T 2o35_A 43 FCRNCLSNWYRE 54 (105)
T ss_dssp CCHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 899999999875
No 146
>4fo9_A E3 SUMO-protein ligase PIAS2; E3 ligase, pinit domain, SP-ring domain, structural GE consortium, SGC; 2.39A {Homo sapiens} PDB: 2asq_B
Probab=29.57 E-value=38 Score=35.07 Aligned_cols=51 Identities=18% Similarity=0.378 Sum_probs=33.7
Q ss_pred CCcccccccccccceee-ccCCcccHhHHHHHHhcC-CCCCCCCcccccCCcCC
Q 007807 335 DDECAICREPMAKAKKL-LCNHLFHLACLRSWLDQG-LNEMYSCPTCRKPLFVG 386 (589)
Q Consensus 335 ~~~C~IC~e~~~~~~~l-pC~H~Fh~~Cl~~Wl~~~-~~~~~~CP~CR~~~~~~ 386 (589)
...|++-...+..|.+- .|.|.=|.+ +..|++.. ....-.||+|.+.+...
T Consensus 215 SL~CPlS~~ri~~P~Rg~~C~HlqCFD-l~sfL~~~~~~~~W~CPiC~k~~~~~ 267 (360)
T 4fo9_A 215 SLMCPLGKMRLTIPCRAVTCTHLQCFD-AALYLQMNEKKPTWICPVCDKKAAYE 267 (360)
T ss_dssp ESBCTTTCSBCSSEEEETTCCCCCCEE-HHHHHHHHHHSCCCBCTTTCSBCCGG
T ss_pred eeeCCCccceeccCCcCCCCCCCccCC-HHHHHHHHhhCCCeECCCCCcccCHH
Confidence 45799999999888664 799984433 23444321 01257999999887643
No 147
>3fyb_A Protein of unknown function (DUF1244); hydrocar degrading, structural genomics, PSI-2; HET: PEG; 1.80A {Alcanivorax borkumensis SK2}
Probab=29.56 E-value=20 Score=30.08 Aligned_cols=12 Identities=42% Similarity=0.974 Sum_probs=10.8
Q ss_pred ccHhHHHHHHhc
Q 007807 357 FHLACLRSWLDQ 368 (589)
Q Consensus 357 Fh~~Cl~~Wl~~ 368 (589)
||+.||..|...
T Consensus 42 FCRNCLskWy~~ 53 (104)
T 3fyb_A 42 FCRNCLAKWLME 53 (104)
T ss_dssp CCHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 899999999875
No 148
>1y02_A CARP2, FYVE-ring finger protein sakura; zinc-binding module, phosphoinositide binding, caspase regulation, metal binding protein; 1.80A {Homo sapiens} SCOP: a.140.2.1 g.50.1.1
Probab=29.17 E-value=6.3 Score=34.51 Aligned_cols=43 Identities=21% Similarity=0.481 Sum_probs=29.6
Q ss_pred Cccccccccccccee----eccCCcccHhHHHHHHhcCCCCCCCCcccccC
Q 007807 336 DECAICREPMAKAKK----LLCNHLFHLACLRSWLDQGLNEMYSCPTCRKP 382 (589)
Q Consensus 336 ~~C~IC~e~~~~~~~----lpC~H~Fh~~Cl~~Wl~~~~~~~~~CP~CR~~ 382 (589)
..|..|...|...++ -.||.+||..|....... ...|-.|-..
T Consensus 20 ~~C~~C~~~Fs~~~RkHHCR~CG~ifC~~Cs~~~~~~----vRVC~~C~~~ 66 (120)
T 1y02_A 20 PSCKSCGAHFANTARKQTCLDCKKNFCMTCSSQVGNG----PRLCLLCQRF 66 (120)
T ss_dssp CCCTTTCCCCSSGGGCEECTTTCCEECGGGEEC--------CCEEHHHHHH
T ss_pred CcccCcCCccccccccccCCCCCCeeCHHHhCCCCCC----ceECHHHHHH
Confidence 579999999875422 389999999997554332 4678888553
No 149
>3o70_A PHD finger protein 13; PHF13, structural genomics consortium, SGC, structural genom type zinc finger, protein binding, zinc ION binding; 1.85A {Homo sapiens}
Probab=28.33 E-value=10 Score=29.64 Aligned_cols=45 Identities=27% Similarity=0.703 Sum_probs=29.0
Q ss_pred CCcccccccccccceee---ccCCcccHhHHHHHHhcCCCCCCCCccccc
Q 007807 335 DDECAICREPMAKAKKL---LCNHLFHLACLRSWLDQGLNEMYSCPTCRK 381 (589)
Q Consensus 335 ~~~C~IC~e~~~~~~~l---pC~H~Fh~~Cl~~Wl~~~~~~~~~CP~CR~ 381 (589)
...| ||.........+ .|..-||..|+.--.. ..+..-.||.|+.
T Consensus 19 ~~~C-iC~~~~~~~~MIqCd~C~~WfH~~Cvgi~~~-~~~~~~~C~~C~~ 66 (68)
T 3o70_A 19 LVTC-FCMKPFAGRPMIECNECHTWIHLSCAKIRKS-NVPEVFVCQKCRD 66 (68)
T ss_dssp CCCS-TTCCCCTTCCEEECTTTCCEEETTTTTCCTT-SCCSSCCCHHHHT
T ss_pred ceEe-ECCCcCCCCCEEECCCCCccccccccCcCcc-cCCCcEECCCCCC
Confidence 3467 998876543333 5888999999853111 1223678999975
No 150
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=28.21 E-value=19 Score=34.44 Aligned_cols=28 Identities=21% Similarity=0.524 Sum_probs=21.8
Q ss_pred CCccccccccccccee----eccCCcccHhHH
Q 007807 335 DDECAICREPMAKAKK----LLCNHLFHLACL 362 (589)
Q Consensus 335 ~~~C~IC~e~~~~~~~----lpC~H~Fh~~Cl 362 (589)
+..|.+|...|.--.+ -.||++||..|.
T Consensus 161 ~~~C~~C~~~F~~~~rrhhCr~CG~v~C~~Cs 192 (220)
T 1dvp_A 161 GRVCHRCRVEFTFTNRKHHCRNCGQVFCGQCT 192 (220)
T ss_dssp CSBCTTTCCBCCSSSCCEECTTTCCEECSTTS
T ss_pred CCccCCCCCccCCcccccccCCcCCEEChHHh
Confidence 5689999999874422 279999999885
No 151
>1z2q_A LM5-1; membrane protein, FYVE domain, zinc-finger; NMR {Leishmania major}
Probab=28.01 E-value=24 Score=28.48 Aligned_cols=29 Identities=17% Similarity=0.366 Sum_probs=22.5
Q ss_pred CCccccccccccccee----eccCCcccHhHHH
Q 007807 335 DDECAICREPMAKAKK----LLCNHLFHLACLR 363 (589)
Q Consensus 335 ~~~C~IC~e~~~~~~~----lpC~H~Fh~~Cl~ 363 (589)
...|.+|...|..-.+ -.||++||..|..
T Consensus 21 ~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~ 53 (84)
T 1z2q_A 21 APACNGCGCVFTTTVRRHHCRNCGYVLCGDCSR 53 (84)
T ss_dssp CCBCTTTCCBCCTTSCCEECTTTCCEECTGGGC
T ss_pred CCCCcCcCCccccchhcccccCCCcEEChHHhC
Confidence 4579999999875432 2799999999964
No 152
>1x4k_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=27.92 E-value=35 Score=25.85 Aligned_cols=40 Identities=20% Similarity=0.595 Sum_probs=30.4
Q ss_pred CCcccccccccccc--eeeccCCcccHhHHHHHHhcCCCCCCCCcccccCCcCC
Q 007807 335 DDECAICREPMAKA--KKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFVG 386 (589)
Q Consensus 335 ~~~C~IC~e~~~~~--~~lpC~H~Fh~~Cl~~Wl~~~~~~~~~CP~CR~~~~~~ 386 (589)
...|+.|.+.+... ....-+..||..| ..|-.|+.++...
T Consensus 5 ~~~C~~C~~~I~~~~~~~~a~~~~~H~~C------------F~C~~C~~~L~~~ 46 (72)
T 1x4k_A 5 SSGCQECKKTIMPGTRKMEYKGSSWHETC------------FICHRCQQPIGTK 46 (72)
T ss_dssp CCCBSSSCCCCCSSSCEEEETTEEEETTT------------TCCSSSCCCCCSS
T ss_pred CCCCccCCCcccCCceEEEECcCeecccC------------CcccccCCccCCC
Confidence 45799999998753 3445788999988 4799999887643
No 153
>2kgg_A Histone demethylase jarid1A; PHD finger, histone modification, leukemia, alternative splicing, chromatin regulator, developmental protein; NMR {Homo sapiens} PDB: 2kgi_A* 3gl6_A*
Probab=27.90 E-value=7.1 Score=28.68 Aligned_cols=41 Identities=24% Similarity=0.582 Sum_probs=26.1
Q ss_pred cccccccccccce-ee----ccCCcccHhHHHHH---HhcCCCCCCCCcccc
Q 007807 337 ECAICREPMAKAK-KL----LCNHLFHLACLRSW---LDQGLNEMYSCPTCR 380 (589)
Q Consensus 337 ~C~IC~e~~~~~~-~l----pC~H~Fh~~Cl~~W---l~~~~~~~~~CP~CR 380 (589)
.|.+|..+..+.. .+ .|.--||..|+.-- ... ....||.|+
T Consensus 4 ~cc~C~~p~~~~~~mI~Cd~~C~~WfH~~Cvgl~~~~~~~---~~~~C~~C~ 52 (52)
T 2kgg_A 4 AAQNCQRPCKDKVDWVQCDGGCDEWFHQVCVGVSPEMAEN---EDYICINCA 52 (52)
T ss_dssp SCTTCCCCCCTTCCEEECTTTTCCEEETTTTTCCHHHHHH---SCCCCSCC-
T ss_pred cCCCCcCccCCCCcEEEeCCCCCccCcccccCCCccccCC---CCEECCCCC
Confidence 4778988875432 22 47778999997421 112 158899985
No 154
>3t7l_A Zinc finger FYVE domain-containing protein 16; structural genomics consortium, SGC, lipid BIND protein, transport protein; 1.09A {Homo sapiens}
Probab=27.78 E-value=26 Score=28.76 Aligned_cols=30 Identities=20% Similarity=0.514 Sum_probs=22.8
Q ss_pred CCccccccccccccee----eccCCcccHhHHHH
Q 007807 335 DDECAICREPMAKAKK----LLCNHLFHLACLRS 364 (589)
Q Consensus 335 ~~~C~IC~e~~~~~~~----lpC~H~Fh~~Cl~~ 364 (589)
...|.+|...|..-.+ -.||++||..|...
T Consensus 20 ~~~C~~C~~~F~~~~RrhhCr~CG~v~C~~Cs~~ 53 (90)
T 3t7l_A 20 APNCMNCQVKFTFTKRRHHCRACGKVFCGVCCNR 53 (90)
T ss_dssp CCBCTTTCCBCCSSSCCEECTTTCCEECGGGSCE
T ss_pred CCcCcCCCCcccchhhCccccCCCCEECCcccCC
Confidence 3579999999875422 37999999999643
No 155
>1wfk_A Zinc finger, FYVE domain containing 19; riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Mus musculus} SCOP: g.50.1.1
Probab=27.53 E-value=22 Score=29.14 Aligned_cols=29 Identities=28% Similarity=0.526 Sum_probs=22.4
Q ss_pred CCccccccccccccee----eccCCcccHhHHH
Q 007807 335 DDECAICREPMAKAKK----LLCNHLFHLACLR 363 (589)
Q Consensus 335 ~~~C~IC~e~~~~~~~----lpC~H~Fh~~Cl~ 363 (589)
...|.+|...|..-.+ -.||++||..|..
T Consensus 9 ~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~ 41 (88)
T 1wfk_A 9 ESRCYGCAVKFTLFKKEYGCKNCGRAFCNGCLS 41 (88)
T ss_dssp CSBCTTTCCBCCSSSCEEECSSSCCEEETTTSC
T ss_pred CCCCcCcCCcccCccccccCCCCCCEEChhHcC
Confidence 3479999999875432 2799999999963
No 156
>1iml_A CRIP, cysteine rich intestinal protein; metal-binding protein, LIM domain protein; NMR {Rattus rattus} SCOP: g.39.1.3 g.39.1.3
Probab=27.46 E-value=31 Score=26.64 Aligned_cols=38 Identities=26% Similarity=0.579 Sum_probs=26.1
Q ss_pred cccccccccccc-eeeccCCcccHhHHHHHHhcCCCCCCCCcccccCCcCC
Q 007807 337 ECAICREPMAKA-KKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFVG 386 (589)
Q Consensus 337 ~C~IC~e~~~~~-~~lpC~H~Fh~~Cl~~Wl~~~~~~~~~CP~CR~~~~~~ 386 (589)
.|+.|.+.+... ....-+..||..| ..|..|+.++...
T Consensus 2 ~C~~C~~~I~~~~~v~a~~~~~H~~C------------F~C~~C~~~L~~~ 40 (76)
T 1iml_A 2 KCPKCDKEVYFAERVTSLGKDWHRPC------------LKCEKCGKTLTSG 40 (76)
T ss_dssp BCTTTSSBCCGGGEEEETTEEEETTT------------CBCTTTCCBCCTT
T ss_pred cCCCCCCEEECceEEEECCccccCCC------------CCccccCccCCCC
Confidence 588888877633 3334578888887 4788888877643
No 157
>1x63_A Skeletal muscle LIM-protein 1; LIM domain, four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=27.42 E-value=42 Score=26.15 Aligned_cols=40 Identities=18% Similarity=0.595 Sum_probs=30.4
Q ss_pred CCcccccccccccc--eeeccCCcccHhHHHHHHhcCCCCCCCCcccccCCcCC
Q 007807 335 DDECAICREPMAKA--KKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFVG 386 (589)
Q Consensus 335 ~~~C~IC~e~~~~~--~~lpC~H~Fh~~Cl~~Wl~~~~~~~~~CP~CR~~~~~~ 386 (589)
...|..|.+.+... ....-+..||..| ..|-.|++++...
T Consensus 15 ~~~C~~C~~~I~~~~~~~~a~~~~~H~~C------------F~C~~C~~~L~~~ 56 (82)
T 1x63_A 15 SPKCKGCFKAIVAGDQNVEYKGTVWHKDC------------FTCSNCKQVIGTG 56 (82)
T ss_dssp SCBCSSSCCBCCSSSCEEECSSCEEETTT------------CCCSSSCCCCTTS
T ss_pred CCcCccCCcccccCceEEEECcccccccc------------CchhhCCCccCCC
Confidence 45899999988743 3445688999988 4799999887643
No 158
>2dlo_A Thyroid receptor-interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=27.03 E-value=37 Score=26.53 Aligned_cols=40 Identities=23% Similarity=0.591 Sum_probs=30.8
Q ss_pred CCCcccccccccccceeeccCCcccHhHHHHHHhcCCCCCCCCcccccCCcC
Q 007807 334 YDDECAICREPMAKAKKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFV 385 (589)
Q Consensus 334 ~~~~C~IC~e~~~~~~~lpC~H~Fh~~Cl~~Wl~~~~~~~~~CP~CR~~~~~ 385 (589)
....|+.|.+.+.+.....-+..||..| ..|..|+.++..
T Consensus 14 ~~~~C~~C~~~I~~~~~~a~~~~~H~~C------------F~C~~C~~~L~~ 53 (81)
T 2dlo_A 14 TLEKCATCSQPILDRILRAMGKAYHPGC------------FTCVVCHRGLDG 53 (81)
T ss_dssp SCCBCTTTCCBCCSCCEEETTEEECTTT------------CBCSSSCCBCTT
T ss_pred CCCccccCCCeecceeEEECCccccHHh------------cCcccCCCccCC
Confidence 3457999999887654456788999988 479999988753
No 159
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=26.86 E-value=22 Score=34.26 Aligned_cols=29 Identities=24% Similarity=0.615 Sum_probs=22.5
Q ss_pred CCccccccccccccee----eccCCcccHhHHH
Q 007807 335 DDECAICREPMAKAKK----LLCNHLFHLACLR 363 (589)
Q Consensus 335 ~~~C~IC~e~~~~~~~----lpC~H~Fh~~Cl~ 363 (589)
+..|.+|...|..-.+ -.||++||..|-.
T Consensus 164 ~~~C~~C~~~F~~~~RrhHCR~CG~v~C~~Cs~ 196 (226)
T 3zyq_A 164 AEECHRCRVQFGVMTRKHHCRACGQIFCGKCSS 196 (226)
T ss_dssp CSBCTTTCCBCBTTBCCEECTTTCCEECTTTCC
T ss_pred CCCCcCcCCCCCccccccccCCCcCEeChhhcC
Confidence 4689999999875422 3799999999964
No 160
>2vpb_A Hpygo1, pygopus homolog 1; gene regulation, WNT signaling pathway, WNT signaling complex, chromosomal rearrangement, signaling protein; 1.59A {Homo sapiens} PDB: 2vpd_A 2yyr_A* 2dx8_A* 2vp7_A 2vpg_A* 2vpe_A*
Probab=26.67 E-value=28 Score=26.85 Aligned_cols=47 Identities=23% Similarity=0.566 Sum_probs=28.6
Q ss_pred CCCcccccccccccceee-----ccCCcccHhHHHH------HHhcCCCCCCCCcccc
Q 007807 334 YDDECAICREPMAKAKKL-----LCNHLFHLACLRS------WLDQGLNEMYSCPTCR 380 (589)
Q Consensus 334 ~~~~C~IC~e~~~~~~~l-----pC~H~Fh~~Cl~~------Wl~~~~~~~~~CP~CR 380 (589)
....|.+|..++.+.... .|.--||..|+.- -+.+.....-.||.|+
T Consensus 7 ~~~~C~~C~~p~~~~~~mI~CD~~C~~WfH~~Cvglt~~~~~~l~~e~~~~w~C~~C~ 64 (65)
T 2vpb_A 7 PVYPCGICTNEVNDDQDAILCEASCQKWFHRICTGMTETAYGLLTAEASAVWGCDTCM 64 (65)
T ss_dssp --CBCTTTCSBCCTTSCEEEBTTTTCCEEEHHHHTCCHHHHHHHHHCTTEEECCHHHH
T ss_pred CcCcCccCCCccCCCCCeEecccCccccCchhccCCCHHHHHHhhccCCCcEECcCcc
Confidence 345799999987654322 6888999999741 1221111135788885
No 161
>2yw8_A RUN and FYVE domain-containing protein 1; structure genomics, structural genomics, NPPSFA; 3.00A {Homo sapiens} PDB: 2yqm_A
Probab=26.51 E-value=27 Score=28.07 Aligned_cols=28 Identities=21% Similarity=0.680 Sum_probs=22.1
Q ss_pred Cccccccccccccee----eccCCcccHhHHH
Q 007807 336 DECAICREPMAKAKK----LLCNHLFHLACLR 363 (589)
Q Consensus 336 ~~C~IC~e~~~~~~~----lpC~H~Fh~~Cl~ 363 (589)
..|.+|...|..-.+ -.||++||..|..
T Consensus 20 ~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~ 51 (82)
T 2yw8_A 20 THCRQCEKEFSISRRKHHCRNCGHIFCNTCSS 51 (82)
T ss_dssp CBCTTTCCBCBTTBCCEECTTTCCEECSGGGC
T ss_pred CcccCcCCcccCccccccCCCCCCEEChHHhC
Confidence 479999999875432 2799999999964
No 162
>2lfh_A DNA-binding protein inhibitor ID-3; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=26.38 E-value=44 Score=26.14 Aligned_cols=32 Identities=22% Similarity=0.531 Sum_probs=25.5
Q ss_pred hHhHHHHHHHHHHhcCCCchH------HHHHHHhhhhc
Q 007807 545 IANILAMAETVREVLPHMPED------LIFQVCLDFMF 576 (589)
Q Consensus 545 ~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~ 576 (589)
|.+++.-=+.+|+++|.+|.+ =|+|-..||+.
T Consensus 26 m~~lN~aF~~LR~~VP~~p~~kKLSKiEtLr~Ai~YI~ 63 (68)
T 2lfh_A 26 LDDMNHCYSRLRELVPGVPRGTQLSQVEILQRVIDYIL 63 (68)
T ss_dssp SSHHHHHHHHHHHHCCCCCTTCCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCCCCCCCccHHHHHHHHHHHHH
Confidence 788888889999999999875 36666666653
No 163
>1x4u_A Zinc finger, FYVE domain containing 27 isoform B; phosphoinositide binding, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=25.70 E-value=26 Score=28.26 Aligned_cols=27 Identities=26% Similarity=0.557 Sum_probs=21.3
Q ss_pred Cccccccccccccee----eccCCcccHhHH
Q 007807 336 DECAICREPMAKAKK----LLCNHLFHLACL 362 (589)
Q Consensus 336 ~~C~IC~e~~~~~~~----lpC~H~Fh~~Cl 362 (589)
..|.+|...|..-++ -.||.+||..|.
T Consensus 15 ~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs 45 (84)
T 1x4u_A 15 GNCTGCSATFSVLKKRRSCSNCGNSFCSRCC 45 (84)
T ss_dssp SSCSSSCCCCCSSSCCEECSSSCCEECTTTS
T ss_pred CcCcCcCCccccchhhhhhcCCCcEEChhhc
Confidence 479999999865432 279999999985
No 164
>1x3h_A Leupaxin; paxillin family, protein-protein interaction, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=25.62 E-value=38 Score=26.28 Aligned_cols=40 Identities=20% Similarity=0.603 Sum_probs=30.9
Q ss_pred CCcccccccccccceeeccCCcccHhHHHHHHhcCCCCCCCCcccccCCcCC
Q 007807 335 DDECAICREPMAKAKKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFVG 386 (589)
Q Consensus 335 ~~~C~IC~e~~~~~~~lpC~H~Fh~~Cl~~Wl~~~~~~~~~CP~CR~~~~~~ 386 (589)
...|+.|.+.+.......-+..||..| ..|-.|+.++...
T Consensus 15 ~~~C~~C~~~I~~~~v~a~~~~~H~~C------------F~C~~C~~~L~~~ 54 (80)
T 1x3h_A 15 SPKCGGCNRPVLENYLSAMDTVWHPEC------------FVCGDCFTSFSTG 54 (80)
T ss_dssp SCBCTTTCCBCCSSCEEETTEEECTTT------------CBCSSSCCBSCSS
T ss_pred CCccccCCCeecceeEEECCCeEecCc------------CChhhCCCCCCCC
Confidence 357999999887655556778899988 4799999888653
No 165
>2l43_A N-teminal domain from histone H3.3, linker, PHD1 from bromodomain-containing protein...; PHD finger, histone CODE, transcription; NMR {Homo sapiens}
Probab=25.62 E-value=42 Score=27.40 Aligned_cols=50 Identities=22% Similarity=0.406 Sum_probs=32.5
Q ss_pred cCCCccccccccc--ccceee---ccCCcccHhHHHHHHhcCCCCCCCCcccccCCc
Q 007807 333 AYDDECAICREPM--AKAKKL---LCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLF 384 (589)
Q Consensus 333 ~~~~~C~IC~e~~--~~~~~l---pC~H~Fh~~Cl~~Wl~~~~~~~~~CP~CR~~~~ 384 (589)
+.+..|.||.+.- .....+ .|.-.||..|+..-.. ....-.||.|+....
T Consensus 23 ~~~~~C~vC~~~~s~~~~~ll~CD~C~~~fH~~Cl~p~~v--P~g~W~C~~C~~~~~ 77 (88)
T 2l43_A 23 DEDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVPYI--PEGQWLCRHCLQSRA 77 (88)
T ss_dssp CCCCCCSSCCSSSSCSEEEEEECSSSCCCCCHHHHTCSSC--CSSCCCCHHHHHHTT
T ss_pred CCCCcCCcCCCCCCCCCCCEEECCCCCchhhcccCCCCcc--CCCceECccccCccc
Confidence 4567899999764 222333 6888999999964221 112568999976543
No 166
>2cuq_A Four and A half LIM domains 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=25.33 E-value=39 Score=26.23 Aligned_cols=38 Identities=24% Similarity=0.654 Sum_probs=30.0
Q ss_pred CCcccccccccccceeeccCCcccHhHHHHHHhcCCCCCCCCcccccCCc
Q 007807 335 DDECAICREPMAKAKKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLF 384 (589)
Q Consensus 335 ~~~C~IC~e~~~~~~~lpC~H~Fh~~Cl~~Wl~~~~~~~~~CP~CR~~~~ 384 (589)
...|+.|.+.+.......-+..||..| ..|-.|+.++.
T Consensus 15 ~~~C~~C~~~I~~~~v~a~~~~~H~~C------------F~C~~C~~~L~ 52 (80)
T 2cuq_A 15 APRCARCSKTLTQGGVTYRDQPWHREC------------LVCTGCQTPLA 52 (80)
T ss_dssp SCCCTTTCCCCCSCCEESSSSEECTTT------------CBCSSSCCBCT
T ss_pred CCcCCCCCCEecCcEEEECCchhhhhh------------CCcccCCCcCC
Confidence 357999999887655556788999988 47999998885
No 167
>2fiy_A Protein FDHE homolog; FDHE protein, structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: e.59.1.1
Probab=24.89 E-value=14 Score=37.56 Aligned_cols=45 Identities=18% Similarity=0.344 Sum_probs=28.2
Q ss_pred CCCcccccccccccceee----ccC--CcccHhHHHHHHhcCCCCCCCCcccccC
Q 007807 334 YDDECAICREPMAKAKKL----LCN--HLFHLACLRSWLDQGLNEMYSCPTCRKP 382 (589)
Q Consensus 334 ~~~~C~IC~e~~~~~~~l----pC~--H~Fh~~Cl~~Wl~~~~~~~~~CP~CR~~ 382 (589)
....|++|-..-...+.. .=| |..|.-|-.+|--. ...||.|-..
T Consensus 181 ~~~~CPvCGs~P~~s~l~~~g~~~G~R~l~Cs~C~t~W~~~----R~~C~~Cg~~ 231 (309)
T 2fiy_A 181 SRTLCPACGSPPMAGMIRQGGKETGLRYLSCSLCACEWHYV----RIKCSHCEES 231 (309)
T ss_dssp TCSSCTTTCCCEEEEEEEC----CCEEEEEETTTCCEEECC----TTSCSSSCCC
T ss_pred cCCCCCCCCCcCceeEEeecCCCCCcEEEEeCCCCCEEeec----CcCCcCCCCC
Confidence 456899998875433211 112 45555677777555 5899999664
No 168
>1wem_A Death associated transcription factor 1; structural genomics, PHD domain, death inducer- obliterator 1(DIO-1); NMR {Mus musculus} SCOP: g.50.1.2
Probab=24.56 E-value=18 Score=28.56 Aligned_cols=47 Identities=30% Similarity=0.583 Sum_probs=29.0
Q ss_pred Ccccccccccccceee---ccCCcccHhHHHHHHhc-----CCCCCCCCcccccCC
Q 007807 336 DECAICREPMAKAKKL---LCNHLFHLACLRSWLDQ-----GLNEMYSCPTCRKPL 383 (589)
Q Consensus 336 ~~C~IC~e~~~~~~~l---pC~H~Fh~~Cl~~Wl~~-----~~~~~~~CP~CR~~~ 383 (589)
..| ||.........+ .|..-||..|+.--... ..+....||.|+..-
T Consensus 17 ~~C-~C~~~~~~~~MI~Cd~C~~WfH~~Cvgl~~~~~~~l~~~~~~~~C~~C~~~~ 71 (76)
T 1wem_A 17 LYC-ICRQPHNNRFMICCDRCEEWFHGDCVGISEARGRLLERNGEDYICPNCTILS 71 (76)
T ss_dssp CCS-TTCCCCCSSCEEECSSSCCEEEHHHHSCCHHHHHHHHHHTCCCCCHHHHHHS
T ss_pred CEE-ECCCccCCCCEEEeCCCCCcEeCeEEccchhhhhhccCCCCeEECcCCcCcc
Confidence 456 898876543333 58899999998421100 001258999998643
No 169
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=24.42 E-value=7.6 Score=33.41 Aligned_cols=47 Identities=23% Similarity=0.574 Sum_probs=30.3
Q ss_pred cccccccccccceee---ccCCcccHhHHHHHHhcCCCCCCCCcccccCC
Q 007807 337 ECAICREPMAKAKKL---LCNHLFHLACLRSWLDQGLNEMYSCPTCRKPL 383 (589)
Q Consensus 337 ~C~IC~e~~~~~~~l---pC~H~Fh~~Cl~~Wl~~~~~~~~~CP~CR~~~ 383 (589)
.|.||...-.....+ .|...||..|+..=+.......-.||.|+...
T Consensus 60 ~C~~C~~~~~~~~ll~Cd~C~~~yH~~Cl~ppl~~~P~g~W~C~~C~~~~ 109 (114)
T 2kwj_A 60 SCILCGTSENDDQLLFCDDCDRGYHMYCLNPPVAEPPEGSWSCHLCWELL 109 (114)
T ss_dssp CCTTTTCCTTTTTEEECSSSCCEEETTTSSSCCSSCCSSCCCCHHHHHHH
T ss_pred ccCcccccCCCCceEEcCCCCccccccccCCCccCCCCCCeECccccchh
Confidence 578887754444444 68899999999754433222245699886543
No 170
>2d8v_A Zinc finger FYVE domain-containing protein 19; zfyve19, ZF- B_BOX, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.43.1.1
Probab=24.24 E-value=32 Score=26.75 Aligned_cols=30 Identities=30% Similarity=0.556 Sum_probs=22.3
Q ss_pred CCCcccccccccccceeecc-CCcccHhHHHH
Q 007807 334 YDDECAICREPMAKAKKLLC-NHLFHLACLRS 364 (589)
Q Consensus 334 ~~~~C~IC~e~~~~~~~lpC-~H~Fh~~Cl~~ 364 (589)
+..-|.||.++ ..-+-+.| +-.||..|.++
T Consensus 7 e~pWC~ICneD-AtlrC~gCdgDLYC~rC~rE 37 (67)
T 2d8v_A 7 GLPWCCICNED-ATLRCAGCDGDLYCARCFRE 37 (67)
T ss_dssp CCSSCTTTCSC-CCEEETTTTSEEECSSHHHH
T ss_pred CCCeeEEeCCC-CeEEecCCCCceehHHHHHH
Confidence 34689999998 33455678 78899999655
No 171
>2co8_A NEDD9 interacting protein with calponin homology and LIM domains; zinc finger protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=24.14 E-value=49 Score=26.07 Aligned_cols=41 Identities=34% Similarity=0.812 Sum_probs=30.4
Q ss_pred CCCcccccccccccc-eeeccCCcccHhHHHHHHhcCCCCCCCCcccccCCcCC
Q 007807 334 YDDECAICREPMAKA-KKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFVG 386 (589)
Q Consensus 334 ~~~~C~IC~e~~~~~-~~lpC~H~Fh~~Cl~~Wl~~~~~~~~~CP~CR~~~~~~ 386 (589)
....|..|.+.+... ....-+..||..| ..|-.|+..+...
T Consensus 14 ~~~~C~~C~~~I~~~e~v~a~~~~wH~~C------------F~C~~C~~~L~~~ 55 (82)
T 2co8_A 14 AGDLCALCGEHLYVLERLCVNGHFFHRSC------------FRCHTCEATLWPG 55 (82)
T ss_dssp SSCBCSSSCCBCCTTTBCCBTTBCCBTTT------------CBCSSSCCBCCTT
T ss_pred CCCCCcccCCCcccceEEEECCCeeCCCc------------CEEcCCCCCcCCC
Confidence 456899999988543 3335678999999 4799998887654
No 172
>1x61_A Thyroid receptor interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=23.90 E-value=49 Score=25.05 Aligned_cols=38 Identities=32% Similarity=0.760 Sum_probs=29.1
Q ss_pred CCccccccccccc--ceeeccCCcccHhHHHHHHhcCCCCCCCCcccccCCc
Q 007807 335 DDECAICREPMAK--AKKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLF 384 (589)
Q Consensus 335 ~~~C~IC~e~~~~--~~~lpC~H~Fh~~Cl~~Wl~~~~~~~~~CP~CR~~~~ 384 (589)
...|..|.+.+.. .....-+..||..| ..|-.|+.++.
T Consensus 5 ~~~C~~C~~~I~~~~~~~~a~~~~~H~~C------------F~C~~C~~~L~ 44 (72)
T 1x61_A 5 SSGCGGCGEDVVGDGAGVVALDRVFHVGC------------FVCSTCRAQLR 44 (72)
T ss_dssp CCCCSSSCSCCCSSSCCEECSSSEECTTT------------CBCSSSCCBCT
T ss_pred CCCCccCCCccCCCceEEEECCCeEcccC------------CcccccCCcCC
Confidence 4579999988764 23446688999988 47999998884
No 173
>2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB, RAB27B, effector, SLP homology domain, acetylation, lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus}
Probab=23.44 E-value=71 Score=28.90 Aligned_cols=46 Identities=20% Similarity=0.488 Sum_probs=29.1
Q ss_pred CCCccccccccccc---c--eeeccCCcccHhHHHHHHhcCCCCCCCCcccccC
Q 007807 334 YDDECAICREPMAK---A--KKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKP 382 (589)
Q Consensus 334 ~~~~C~IC~e~~~~---~--~~lpC~H~Fh~~Cl~~Wl~~~~~~~~~CP~CR~~ 382 (589)
.+..|++|..+|.- . .-..|+|.+|..|- .|... ...-.|-+|+..
T Consensus 67 ~~~~C~~C~~~fg~l~~~g~~C~~C~~~VC~~C~-~~~~~--~~~W~C~vC~k~ 117 (153)
T 2zet_C 67 NETHCARCLQPYRLLLNSRRQCLECSLFVCKSCS-HAHPE--EQGWLCDPCHLA 117 (153)
T ss_dssp GGTBCTTTCCBGGGCSSCCEECTTTCCEECGGGE-ECCSS--SSSCEEHHHHHH
T ss_pred CCccchhhcCccccccCCCCcCCCCCchhhcccc-cccCC--CCcEeeHHHHHH
Confidence 45689999998742 2 23379999999885 22221 123567777654
No 174
>1g47_A Pinch protein; LIM domain, Zn finger, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=23.44 E-value=46 Score=25.56 Aligned_cols=41 Identities=22% Similarity=0.520 Sum_probs=30.5
Q ss_pred CCCccccccccccc--ceeeccCCcccHhHHHHHHhcCCCCCCCCcccccCCcCC
Q 007807 334 YDDECAICREPMAK--AKKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFVG 386 (589)
Q Consensus 334 ~~~~C~IC~e~~~~--~~~lpC~H~Fh~~Cl~~Wl~~~~~~~~~CP~CR~~~~~~ 386 (589)
....|+.|.+.+.. .....-+..||..| ..|-.|+.++...
T Consensus 10 ~~~~C~~C~~~I~~~~~~~~a~~~~~H~~C------------F~C~~C~~~L~~~ 52 (77)
T 1g47_A 10 ASATCERCKGGFAPAEKIVNSNGELYHEQC------------FVCAQCFQQFPEG 52 (77)
T ss_dssp CCCBCSSSCCBCCSTTTCEEETTEEECTTT------------CCCTTTCCCCGGG
T ss_pred CCCCchhcCCccCCCceEEEeCccEecccc------------CeECCCCCCCCCC
Confidence 34689999998863 23336788999988 4799998887653
No 175
>1zfo_A LAsp-1; LIM domain, zinc-finger, metal-binding protein; NMR {Sus scrofa} SCOP: g.39.1.4
Probab=23.21 E-value=43 Score=21.67 Aligned_cols=26 Identities=27% Similarity=0.636 Sum_probs=18.2
Q ss_pred Ccccccccccccceee-ccCCcccHhH
Q 007807 336 DECAICREPMAKAKKL-LCNHLFHLAC 361 (589)
Q Consensus 336 ~~C~IC~e~~~~~~~l-pC~H~Fh~~C 361 (589)
+.|+.|....-...++ .-|..||..|
T Consensus 4 ~~C~~C~k~Vy~~Ek~~~~g~~~Hk~C 30 (31)
T 1zfo_A 4 PNCARCGKIVYPTEKVNCLDKFWHKAC 30 (31)
T ss_dssp CBCSSSCSBCCGGGCCCSSSSCCCGGG
T ss_pred CcCCccCCEEecceeEEECCeEecccC
Confidence 4688888876554444 4568888888
No 176
>1wee_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=23.08 E-value=9.2 Score=29.99 Aligned_cols=46 Identities=20% Similarity=0.416 Sum_probs=29.3
Q ss_pred Ccccccccccccc-eee---ccCCcccHhHHHHHHhcCCCCCCCCcccccC
Q 007807 336 DECAICREPMAKA-KKL---LCNHLFHLACLRSWLDQGLNEMYSCPTCRKP 382 (589)
Q Consensus 336 ~~C~IC~e~~~~~-~~l---pC~H~Fh~~Cl~~Wl~~~~~~~~~CP~CR~~ 382 (589)
..| ||.....+. ..+ .|..-||..|+.--.....+....||.|+..
T Consensus 17 ~~C-~C~~~~~~g~~mI~Cd~C~~W~H~~Cvg~~~~~~~~~~~~C~~C~~~ 66 (72)
T 1wee_A 17 VDC-KCGTKDDDGERMLACDGCGVWHHTRCIGINNADALPSKFLCFRCIEL 66 (72)
T ss_dssp ECC-TTCCCSCCSSCEEECSSSCEEEETTTTTCCTTSCCCSCCCCHHHHHH
T ss_pred eEe-eCCCccCCCCcEEECCCCCCccCCeeeccCccccCCCcEECCCccCC
Confidence 358 698876544 233 5888899999853211122346889999764
No 177
>3mpx_A FYVE, rhogef and PH domain-containing protein 5; structural genomics consortium, DH domain, SGC, L binding protein; 2.80A {Homo sapiens}
Probab=23.00 E-value=18 Score=37.99 Aligned_cols=32 Identities=16% Similarity=0.243 Sum_probs=0.0
Q ss_pred CCcccccccccccce----eeccCCcccHhHHHHHH
Q 007807 335 DDECAICREPMAKAK----KLLCNHLFHLACLRSWL 366 (589)
Q Consensus 335 ~~~C~IC~e~~~~~~----~lpC~H~Fh~~Cl~~Wl 366 (589)
...|.+|...|.... .-.||++||..|.....
T Consensus 375 ~~~c~~c~~~f~~~~r~h~Cr~Cg~~~C~~Cs~~~~ 410 (434)
T 3mpx_A 375 VMMCMNCGCDFSLTLRRHHCHACGKIVCRNCSRNKY 410 (434)
T ss_dssp ------------------------------------
T ss_pred CCcCCCcCCCCCCcchhhhcccCcCEeehhhCCCee
Confidence 357999999887442 23799999999986543
No 178
>1wgl_A TOLL-interacting protein; CUE domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, immune system; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=22.26 E-value=73 Score=24.05 Aligned_cols=24 Identities=17% Similarity=0.340 Sum_probs=20.1
Q ss_pred HHHHHHHHHhcCCCchHHHHHHHh
Q 007807 549 LAMAETVREVLPHMPEDLIFQVCL 572 (589)
Q Consensus 549 ~~~~~~~~~~~~~~~~~~~~~~~~ 572 (589)
..-.++++|++|++.++.|-..|.
T Consensus 10 ee~l~~L~emFP~ld~~~I~~vL~ 33 (59)
T 1wgl_A 10 EEDLKAIQDMFPNMDQEVIRSVLE 33 (59)
T ss_dssp HHHHHHHHHHCSSSCHHHHHHHHT
T ss_pred HHHHHHHHHHCCCCCHHHHHHHHH
Confidence 466788999999999999987764
No 179
>2l4z_A DNA endonuclease RBBP8, LIM domain transcription LMO4; protein-protein interaction, LIM-interaction DOM LMO4, RBBP8/CTIP, LIM-only protein; HET: DNA; NMR {Homo sapiens}
Probab=22.07 E-value=36 Score=29.37 Aligned_cols=38 Identities=24% Similarity=0.497 Sum_probs=30.3
Q ss_pred CCcccccccccccce-eeccCCcccHhHHHHHHhcCCCCCCCCcccccCCc
Q 007807 335 DDECAICREPMAKAK-KLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLF 384 (589)
Q Consensus 335 ~~~C~IC~e~~~~~~-~lpC~H~Fh~~Cl~~Wl~~~~~~~~~CP~CR~~~~ 384 (589)
...|.-|-+...... ...-+..||..| ..|-.|+.++.
T Consensus 61 ~~~C~~C~~~I~~~~~v~a~~~~wH~~C------------F~C~~C~~~L~ 99 (123)
T 2l4z_A 61 WKRCAGCGGKIADRFLLYAMDSYWHSRC------------LKCSSCQAQLG 99 (123)
T ss_dssp CSBBSSSSSBCCSSSEEEETTEEEETTT------------SBCTTTCCBGG
T ss_pred CCcCcCCCCCcCCcEEEEeCCcEEcccc------------cCcCcCCCccc
Confidence 357999999887663 446788999999 47999998885
No 180
>1z60_A TFIIH basal transcription factor complex P44 subunit; basic transcription factor, zinc binding protein, ring finger; NMR {Homo sapiens} SCOP: g.49.1.2
Probab=21.65 E-value=44 Score=25.37 Aligned_cols=40 Identities=23% Similarity=0.690 Sum_probs=28.0
Q ss_pred Cccccccccccccee---eccCCcccHhHHHHHHhcCCCCCCCCccc
Q 007807 336 DECAICREPMAKAKK---LLCNHLFHLACLRSWLDQGLNEMYSCPTC 379 (589)
Q Consensus 336 ~~C~IC~e~~~~~~~---lpC~H~Fh~~Cl~~Wl~~~~~~~~~CP~C 379 (589)
..|--|...+.+... -.|++.||.+|= ..+... -..||-|
T Consensus 16 ~~C~~C~~~~~~~~~y~C~~C~~~FC~dCD-~fiHe~---Lh~CPgC 58 (59)
T 1z60_A 16 RFCYGCQGELKDQHVYVCAVCQNVFCVDCD-VFVHDS---LHSCPGC 58 (59)
T ss_dssp CEETTTTEECTTSEEECCTTTTCCBCHHHH-HTTTTT---SCSSSTT
T ss_pred CcccccCcccCCCccEECCccCcCcccchh-HHHHhh---ccCCcCC
Confidence 469999999865432 369999999994 233322 4689988
No 181
>2egq_A FHL1 protein; LIM domain, four and A half LIM domains protein 1, skeletal muscle LIM- protein 1, SLIM 1, structural genomics NPPSFA; NMR {Homo sapiens}
Probab=21.23 E-value=49 Score=25.39 Aligned_cols=39 Identities=23% Similarity=0.577 Sum_probs=29.6
Q ss_pred CCccccccccccc-----ceeeccCCcccHhHHHHHHhcCCCCCCCCcccccCCcC
Q 007807 335 DDECAICREPMAK-----AKKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFV 385 (589)
Q Consensus 335 ~~~C~IC~e~~~~-----~~~lpC~H~Fh~~Cl~~Wl~~~~~~~~~CP~CR~~~~~ 385 (589)
...|+.|.+.+.. .....=+..||..| ..|-.|+.++..
T Consensus 15 ~~~C~~C~~~I~~~g~~~~~~~a~~~~~H~~C------------F~C~~C~~~L~~ 58 (77)
T 2egq_A 15 AKKCAGCKNPITGFGKGSSVVAYEGQSWHDYC------------FHCKKCSVNLAN 58 (77)
T ss_dssp CCCCSSSCCCCCCCSSCCCEEEETTEEEETTT------------CBCSSSCCBCTT
T ss_pred CccCcccCCcccCCCCCceeEEECcceeCccc------------CEehhcCCCCCC
Confidence 4579999998874 33445678899988 479999988753
No 182
>2dj7_A Actin-binding LIM protein 3; LIM domain, Zn binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=20.82 E-value=51 Score=25.92 Aligned_cols=39 Identities=28% Similarity=0.670 Sum_probs=29.5
Q ss_pred CCCcccccccccccc-eeeccCCcccHhHHHHHHhcCCCCCCCCcccccCCc
Q 007807 334 YDDECAICREPMAKA-KKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLF 384 (589)
Q Consensus 334 ~~~~C~IC~e~~~~~-~~lpC~H~Fh~~Cl~~Wl~~~~~~~~~CP~CR~~~~ 384 (589)
....|.-|-+.+... ....-+..||..| ..|-.|+.++.
T Consensus 14 ~~~~C~~C~~~I~~~~~v~a~~~~wH~~C------------F~C~~C~~~L~ 53 (80)
T 2dj7_A 14 GPSHCAGCKEEIKHGQSLLALDKQWHVSC------------FKCQTCSVILT 53 (80)
T ss_dssp SCSCCTTTCCCCSSSCCEEETTEEECTTT------------CBCSSSCCBCS
T ss_pred CCCCCcCcCCeeCCCeEEEECCccccccc------------CCcCcCCCCcC
Confidence 346899999988643 3335678899988 47999988775
No 183
>2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} SCOP: g.41.18.1
Probab=20.59 E-value=5.4 Score=33.48 Aligned_cols=42 Identities=24% Similarity=0.466 Sum_probs=26.2
Q ss_pred CCcccccccccccceeeccCCcccHhHHHHHHhcCCCCCCCCcccccCCcC
Q 007807 335 DDECAICREPMAKAKKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFV 385 (589)
Q Consensus 335 ~~~C~IC~e~~~~~~~lpC~H~Fh~~Cl~~Wl~~~~~~~~~CP~CR~~~~~ 385 (589)
+..||+|..+++.. =++.+|..|-..... ...||.|.+++..
T Consensus 32 ~~~CP~Cq~eL~~~----g~~~hC~~C~~~f~~-----~a~CPdC~q~Lev 73 (101)
T 2jne_A 32 ELHCPQCQHVLDQD----NGHARCRSCGEFIEM-----KALCPDCHQPLQV 73 (101)
T ss_dssp CCBCSSSCSBEEEE----TTEEEETTTCCEEEE-----EEECTTTCSBCEE
T ss_pred cccCccCCCcceec----CCEEECccccchhhc-----cccCcchhhHHHH
Confidence 35899999887642 123335556433222 4789999988753
No 184
>2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin regulator, metal-binding, finger, signaling protein; NMR {Homo sapiens}
Probab=20.38 E-value=55 Score=25.61 Aligned_cols=46 Identities=24% Similarity=0.473 Sum_probs=30.1
Q ss_pred CCCccccccccc--ccceee---ccCCcccHhHHHHHHhcCCCCCCCCccccc
Q 007807 334 YDDECAICREPM--AKAKKL---LCNHLFHLACLRSWLDQGLNEMYSCPTCRK 381 (589)
Q Consensus 334 ~~~~C~IC~e~~--~~~~~l---pC~H~Fh~~Cl~~Wl~~~~~~~~~CP~CR~ 381 (589)
.+..|.||.+.- .....+ .|.-.||..|+..-.. ....-.||.|+.
T Consensus 15 ~~~~C~vC~~~~s~~~~~ll~CD~C~~~~H~~Cl~~~~v--P~g~W~C~~C~~ 65 (71)
T 2ku3_A 15 EDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVPYI--PEGQWLCRHCLQ 65 (71)
T ss_dssp SSCSCSSSCCCCCCSSSCEEECSSSCCEEEHHHHTCSSC--CSSCCCCHHHHH
T ss_pred CCCCCCCCCCCCCCCCCCEEECCCCCCccccccCCCCcC--CCCCcCCccCcC
Confidence 467899998763 222333 6889999999864211 112467998865
No 185
>3f6q_B LIM and senescent cell antigen-like-containing domain protein 1; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 2kbx_B 3ixe_B
Probab=20.11 E-value=55 Score=24.51 Aligned_cols=40 Identities=25% Similarity=0.549 Sum_probs=29.9
Q ss_pred CCcccccccccccc--eeeccCCcccHhHHHHHHhcCCCCCCCCcccccCCcCC
Q 007807 335 DDECAICREPMAKA--KKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFVG 386 (589)
Q Consensus 335 ~~~C~IC~e~~~~~--~~lpC~H~Fh~~Cl~~Wl~~~~~~~~~CP~CR~~~~~~ 386 (589)
...|..|.+.+... ....=+..||..|. .|-.|.+++...
T Consensus 11 ~~~C~~C~~~i~~~e~~~~~~~~~~H~~CF------------~C~~C~~~L~~~ 52 (72)
T 3f6q_B 11 SATCERCKGGFAPAEKIVNSNGELYHEQCF------------VCAQCFQQFPEG 52 (72)
T ss_dssp TCBCTTTCCBCCTTCEEEEETTEEEETTTS------------SCTTTCCCCGGG
T ss_pred CccchhcCccccCCceEEEeCcCeeCcCCC------------cccCCCCCCCCC
Confidence 45899999988754 23356788999884 789998887643
Done!