BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 007808
(589 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2FO7|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix
(Trigonal Crystal Form)
pdb|2HYZ|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix
(Orthorombic Crystal Form)
Length = 136
Score = 31.6 bits (70), Expect = 1.1, Method: Composition-based stats.
Identities = 31/153 (20%), Positives = 56/153 (36%), Gaps = 32/153 (20%)
Query: 137 VGTALIELYSTGKAIEAAYKVFGEMDERNVVVWTSMINGYISCGDIVSARCLFELAPERD 196
+G A + +AIE K E+D R+ W ++ N Y GD A ++ A E D
Sbjct: 7 LGNAYYKQGDYDEAIEYYQKAL-ELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD 65
Query: 197 VILWNTIVSGYIDVRNMIEARKLFDQMPKKDVISWNTMLSGYANNGDVEECKRLFE---E 253
+ +W + + Y GD +E ++ E
Sbjct: 66 ----------------------------PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALE 97
Query: 254 MPERNVFSWNGLIGGYANNGLFFEVLDAFKRML 286
+ R+ +W L Y G + E ++ +++ L
Sbjct: 98 LDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKAL 130
>pdb|1YR6|A Chain A, Pab0955 Crystal Structure : A Gtpase In Apo Form From
Pyrococcus Abyssi
pdb|1YR7|A Chain A, Pab0955 Crystal Structure : A Gtpase In Gtp-Gamma-S Bound
Form From Pyrococcus Abyssi
pdb|1YR8|A Chain A, Pab0955 Crystal Structure : A Gtpase In Gtp Bound Form
From Pyrococcus Abyssi
pdb|1YR9|A Chain A, Pab0955 Crystal Structure : A Gtpase In Gdp And Po4 Bound
Form From Pyrococcus Abyssi
pdb|1YRA|A Chain A, Pab0955 Crystal Structure : A Gtpase In Gdp Bound Form
From Pyrococcus Abyssi
pdb|1YRA|B Chain B, Pab0955 Crystal Structure : A Gtpase In Gdp Bound Form
From Pyrococcus Abyssi
pdb|1YRB|A Chain A, Pab0955 Crystal Structure : A Gtpase In Gdp And Mg Bound
Form From Pyrococcus Abyssi
pdb|1YRB|B Chain B, Pab0955 Crystal Structure : A Gtpase In Gdp And Mg Bound
Form From Pyrococcus Abyssi
pdb|2OXR|A Chain A, Pab0955 Crystal Structure : A Gtpase In Gdp And Mg Bound
Form From Pyrococcus Abyssi (After Gtp Hydrolysis)
Length = 262
Score = 31.2 bits (69), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
Query: 505 SNIYGDLGRW-KDVARIKVAMRDTGFKKLPGCSSIEVNEVVMLGCLSRE 552
+ + G+ GR+ +D ++ DTG K+LP SI+V E V + + RE
Sbjct: 28 TTLTGEFGRYLEDNYKVAYVNLDTGVKELPYEPSIDVREFVTVEEIMRE 76
>pdb|1S1M|A Chain A, Crystal Structure Of E. Coli Ctp Synthetase
pdb|1S1M|B Chain B, Crystal Structure Of E. Coli Ctp Synthetase
pdb|2AD5|A Chain A, Mechanisms Of Feedback Regulation And Drug Resistance Of
Ctp Synthetases: Structure Of The E. Coli Ctps/ctp
Complex At 2.8- Angstrom Resolution.
pdb|2AD5|B Chain B, Mechanisms Of Feedback Regulation And Drug Resistance Of
Ctp Synthetases: Structure Of The E. Coli Ctps/ctp
Complex At 2.8- Angstrom Resolution
Length = 545
Score = 30.4 bits (67), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 37/84 (44%), Gaps = 16/84 (19%)
Query: 219 LFDQMPKKDVISWNTMLSGYANNGDVEE-------CKRLFEEMPERNVFSWNGLIGGYAN 271
LF +P+K VIS + S Y G ++ CKR PE N+ W +I AN
Sbjct: 226 LFCNVPEKAVISLKDVDSIYKIPGLLKSQGLDDYICKRFSLNCPEANLSEWEQVIFEEAN 285
Query: 272 N---------GLFFEVLDAFKRML 286
G + E+ DA+K ++
Sbjct: 286 PVSEVTIGMVGKYIELPDAYKSVI 309
>pdb|2UY1|A Chain A, Crystal Structure Of Cstf-77
Length = 493
Score = 29.6 bits (65), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 28/110 (25%), Positives = 49/110 (44%), Gaps = 7/110 (6%)
Query: 129 NGFRANIFVGTALIELYSTGKAIEAAYKVFGE---MDERNVVVWTSMINGYISCGDIVSA 185
G ++F+ A IE Y+TG Y +F + ++ + GD +A
Sbjct: 315 EGVGPHVFIYCAFIEYYATGSRA-TPYNIFSSGLLKHPDSTLLKEEFFLFLLRIGDEENA 373
Query: 186 RCLFELAPERDVILWNTIVSGYIDVRNMIEARKLFDQMPKKDVISWNTML 235
R LF+ E+ +W++++ V +M R+L DQ K D I + +L
Sbjct: 374 RALFKRL-EKTSRMWDSMIEYEFMVGSMELFRELVDQ--KMDAIKADAIL 420
>pdb|2UY1|B Chain B, Crystal Structure Of Cstf-77
Length = 493
Score = 29.3 bits (64), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 28/110 (25%), Positives = 49/110 (44%), Gaps = 7/110 (6%)
Query: 129 NGFRANIFVGTALIELYSTGKAIEAAYKVFGE---MDERNVVVWTSMINGYISCGDIVSA 185
G ++F+ A IE Y+TG Y +F + ++ + GD +A
Sbjct: 315 EGVGPHVFIYCAFIEYYATGSRA-TPYNIFSSGLLKHPDSTLLKEEFFLFLLRIGDEENA 373
Query: 186 RCLFELAPERDVILWNTIVSGYIDVRNMIEARKLFDQMPKKDVISWNTML 235
R LF+ E+ +W++++ V +M R+L DQ K D I + +L
Sbjct: 374 RALFKRL-EKTSRMWDSMIEYEFMVGSMELFRELVDQ--KMDAIKADAIL 420
>pdb|3IYK|A Chain A, Bluetongue Virus Structure Reveals A Sialic Acid Binding
Dom Amphipathic Helices And A Central Coiled Coil In The
Outer Proteins
pdb|3IYK|B Chain B, Bluetongue Virus Structure Reveals A Sialic Acid Binding
Dom Amphipathic Helices And A Central Coiled Coil In The
Outer Proteins
pdb|3IYK|C Chain C, Bluetongue Virus Structure Reveals A Sialic Acid Binding
Dom Amphipathic Helices And A Central Coiled Coil In The
Outer Proteins
pdb|3IYK|D Chain D, Bluetongue Virus Structure Reveals A Sialic Acid Binding
Dom Amphipathic Helices And A Central Coiled Coil In The
Outer Proteins
pdb|3IYK|E Chain E, Bluetongue Virus Structure Reveals A Sialic Acid Binding
Dom Amphipathic Helices And A Central Coiled Coil In The
Outer Proteins
pdb|3IYK|F Chain F, Bluetongue Virus Structure Reveals A Sialic Acid Binding
Dom Amphipathic Helices And A Central Coiled Coil In The
Outer Proteins
Length = 526
Score = 28.9 bits (63), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 36/77 (46%), Gaps = 3/77 (3%)
Query: 81 HRTVVVLFTQMKKLDAMPNCFTFPIVLKSCVKINALREGEELHCLVLKNGFRANIFVGTA 140
H V++ K+DA+ N V + ++ A++E + VL+ +G
Sbjct: 185 HAETVMVKEYRDKIDALKNAIE---VERDGMQEEAIQEIAGMTADVLEAASEEVPLIGAG 241
Query: 141 LIELYSTGKAIEAAYKV 157
+ +TG+AIE AYK+
Sbjct: 242 MATAVATGRAIEGAYKL 258
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.137 0.417
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,099,665
Number of Sequences: 62578
Number of extensions: 705229
Number of successful extensions: 1521
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 1518
Number of HSP's gapped (non-prelim): 10
length of query: 589
length of database: 14,973,337
effective HSP length: 104
effective length of query: 485
effective length of database: 8,465,225
effective search space: 4105634125
effective search space used: 4105634125
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 54 (25.4 bits)