Query 007808
Match_columns 589
No_of_seqs 624 out of 3777
Neff 11.3
Searched_HMMs 46136
Date Thu Mar 28 15:37:15 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007808.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/007808hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03077 Protein ECB2; Provisi 100.0 1.5E-81 3.3E-86 676.1 63.7 570 3-575 188-770 (857)
2 PLN03077 Protein ECB2; Provisi 100.0 3.9E-75 8.5E-80 626.4 54.2 572 4-582 88-717 (857)
3 PLN03081 pentatricopeptide (PP 100.0 4.3E-73 9.3E-78 596.3 59.0 511 63-574 85-606 (697)
4 PLN03218 maturation of RBCL 1; 100.0 1.5E-63 3.3E-68 525.5 55.2 500 27-534 363-916 (1060)
5 PLN03218 maturation of RBCL 1; 100.0 7.4E-59 1.6E-63 490.0 50.1 478 49-533 352-882 (1060)
6 PLN03081 pentatricopeptide (PP 100.0 8.1E-59 1.8E-63 488.2 45.2 423 4-430 125-561 (697)
7 TIGR02917 PEP_TPR_lipo putativ 100.0 6.1E-36 1.3E-40 330.5 54.5 536 12-582 308-897 (899)
8 TIGR02917 PEP_TPR_lipo putativ 100.0 9.7E-35 2.1E-39 320.9 54.3 563 12-584 274-865 (899)
9 PRK11447 cellulose synthase su 100.0 4.6E-27 9.9E-32 259.9 52.8 485 31-525 59-664 (1157)
10 PRK11447 cellulose synthase su 100.0 1.2E-25 2.6E-30 248.7 50.8 515 38-580 116-735 (1157)
11 PRK09782 bacteriophage N4 rece 100.0 9.8E-25 2.1E-29 230.3 48.7 528 19-583 64-704 (987)
12 PRK09782 bacteriophage N4 rece 99.9 1.6E-22 3.4E-27 213.7 52.7 526 7-574 86-729 (987)
13 KOG4626 O-linked N-acetylgluco 99.9 1.2E-24 2.6E-29 204.1 32.3 442 68-520 51-512 (966)
14 KOG4626 O-linked N-acetylgluco 99.9 2.8E-25 6E-30 208.3 27.5 432 103-568 51-502 (966)
15 TIGR00990 3a0801s09 mitochondr 99.9 1.2E-20 2.6E-25 196.4 41.2 414 103-525 130-569 (615)
16 TIGR00990 3a0801s09 mitochondr 99.9 2.5E-20 5.4E-25 194.0 36.8 384 168-582 129-568 (615)
17 KOG2002 TPR-containing nuclear 99.9 9E-20 1.9E-24 180.6 38.1 501 42-571 207-765 (1018)
18 PRK15174 Vi polysaccharide exp 99.9 3.6E-20 7.9E-25 191.9 34.3 379 175-579 14-414 (656)
19 PRK10049 pgaA outer membrane p 99.9 5.7E-19 1.2E-23 187.1 41.7 156 368-525 279-454 (765)
20 PRK11788 tetratricopeptide rep 99.9 2.6E-20 5.7E-25 184.3 29.7 291 237-534 44-354 (389)
21 PRK15174 Vi polysaccharide exp 99.9 7.6E-19 1.7E-23 182.1 38.8 363 145-526 15-402 (656)
22 KOG2002 TPR-containing nuclear 99.9 1.6E-18 3.5E-23 171.8 37.9 469 50-528 146-676 (1018)
23 PRK10049 pgaA outer membrane p 99.9 1.3E-19 2.9E-24 191.9 32.6 384 172-586 21-457 (765)
24 PRK11788 tetratricopeptide rep 99.9 6.9E-19 1.5E-23 174.2 31.1 283 205-492 43-346 (389)
25 PRK14574 hmsH outer membrane p 99.9 1.4E-17 3.1E-22 172.9 41.1 425 109-560 43-522 (822)
26 PRK14574 hmsH outer membrane p 99.9 7E-17 1.5E-21 167.8 45.1 423 72-499 41-519 (822)
27 KOG2003 TPR repeat-containing 99.8 3.4E-17 7.3E-22 149.0 28.1 272 236-513 427-709 (840)
28 KOG0495 HAT repeat protein [RN 99.8 1.5E-14 3.2E-19 137.9 42.1 523 2-544 335-895 (913)
29 KOG1126 DNA-binding cell divis 99.8 3E-17 6.4E-22 157.1 21.8 273 273-578 333-613 (638)
30 KOG2076 RNA polymerase III tra 99.8 1.7E-14 3.7E-19 142.8 41.2 524 40-567 145-785 (895)
31 PF13429 TPR_15: Tetratricopep 99.7 8.9E-18 1.9E-22 157.2 11.5 254 300-580 13-272 (280)
32 KOG0495 HAT repeat protein [RN 99.7 1.3E-12 2.8E-17 124.9 45.1 451 112-579 388-874 (913)
33 KOG2003 TPR repeat-containing 99.7 1.1E-14 2.4E-19 132.8 28.6 439 71-525 207-687 (840)
34 KOG0547 Translocase of outer m 99.7 2E-14 4.3E-19 132.6 30.3 215 305-525 336-564 (606)
35 KOG1155 Anaphase-promoting com 99.7 5.3E-14 1.1E-18 129.0 32.4 369 194-585 161-536 (559)
36 PRK10747 putative protoheme IX 99.7 2.3E-14 5E-19 140.3 28.0 242 306-578 129-383 (398)
37 TIGR00540 hemY_coli hemY prote 99.7 2.3E-14 5.1E-19 141.1 26.5 284 270-580 95-394 (409)
38 PF13429 TPR_15: Tetratricopep 99.7 1E-16 2.2E-21 150.1 9.3 256 264-525 13-275 (280)
39 KOG4422 Uncharacterized conser 99.7 1.8E-12 3.9E-17 117.8 35.1 408 12-458 128-587 (625)
40 KOG2076 RNA polymerase III tra 99.7 1.6E-13 3.5E-18 136.0 30.4 348 178-574 151-544 (895)
41 KOG1173 Anaphase-promoting com 99.7 1.5E-12 3.3E-17 122.7 35.1 280 258-568 243-535 (611)
42 KOG1155 Anaphase-promoting com 99.7 2.6E-13 5.7E-18 124.5 28.7 319 226-581 162-491 (559)
43 KOG1915 Cell cycle control pro 99.7 5.2E-12 1.1E-16 116.3 36.2 472 45-524 84-622 (677)
44 KOG1915 Cell cycle control pro 99.6 7.9E-12 1.7E-16 115.1 36.6 452 64-525 72-583 (677)
45 KOG0547 Translocase of outer m 99.6 1.2E-13 2.5E-18 127.6 23.3 213 339-580 335-561 (606)
46 KOG4422 Uncharacterized conser 99.6 1.4E-11 3E-16 112.2 34.7 409 102-528 118-591 (625)
47 PRK10747 putative protoheme IX 99.6 7.2E-13 1.6E-17 129.8 29.0 274 241-525 97-388 (398)
48 KOG1126 DNA-binding cell divis 99.6 1.2E-13 2.5E-18 132.8 21.3 275 241-525 332-618 (638)
49 TIGR00540 hemY_coli hemY prote 99.6 6.4E-12 1.4E-16 123.9 31.7 280 209-492 96-398 (409)
50 KOG1173 Anaphase-promoting com 99.6 8.7E-12 1.9E-16 117.7 30.4 259 293-580 242-513 (611)
51 COG3071 HemY Uncharacterized e 99.5 1.8E-11 3.9E-16 110.9 27.4 275 272-577 97-382 (400)
52 COG3071 HemY Uncharacterized e 99.5 1.1E-10 2.4E-15 105.9 30.5 275 210-492 97-389 (400)
53 KOG2047 mRNA splicing factor [ 99.5 4.7E-09 1E-13 100.9 41.1 280 229-513 388-709 (835)
54 TIGR02521 type_IV_pilW type IV 99.5 4.2E-12 9E-17 116.1 20.7 194 363-583 33-230 (234)
55 KOG2047 mRNA splicing factor [ 99.5 2E-09 4.4E-14 103.3 37.9 188 336-525 483-685 (835)
56 COG2956 Predicted N-acetylgluc 99.5 2.3E-10 4.9E-15 100.8 27.6 249 271-524 47-308 (389)
57 KOG4162 Predicted calmodulin-b 99.5 4.8E-10 1.1E-14 110.0 32.9 385 164-578 321-776 (799)
58 COG2956 Predicted N-acetylgluc 99.5 1.5E-10 3.3E-15 101.8 25.7 204 265-473 113-324 (389)
59 TIGR02521 type_IV_pilW type IV 99.4 2.6E-11 5.7E-16 110.8 22.1 195 330-525 31-230 (234)
60 KOG1174 Anaphase-promoting com 99.4 7.4E-09 1.6E-13 94.3 35.3 287 257-577 230-525 (564)
61 KOG3785 Uncharacterized conser 99.4 8E-10 1.7E-14 98.5 28.4 89 72-161 29-117 (557)
62 KOG4318 Bicoid mRNA stability 99.4 2.2E-10 4.7E-15 113.7 27.2 243 87-342 12-283 (1088)
63 COG3063 PilF Tfp pilus assembl 99.4 3.8E-11 8.2E-16 100.8 18.4 195 363-586 37-237 (250)
64 KOG2376 Signal recognition par 99.4 3.6E-09 7.7E-14 100.9 32.7 437 72-524 19-517 (652)
65 KOG1129 TPR repeat-containing 99.4 1.3E-11 2.9E-16 108.3 14.3 225 263-525 227-456 (478)
66 KOG4162 Predicted calmodulin-b 99.4 8.3E-10 1.8E-14 108.4 27.9 389 130-525 318-781 (799)
67 PRK12370 invasion protein regu 99.3 6.3E-10 1.4E-14 114.1 26.1 244 273-527 275-535 (553)
68 PRK12370 invasion protein regu 99.3 1.6E-10 3.5E-15 118.5 21.7 208 310-525 276-500 (553)
69 KOG1840 Kinesin light chain [C 99.3 1.9E-10 4.2E-15 112.1 21.0 201 366-583 246-477 (508)
70 KOG2376 Signal recognition par 99.3 8.3E-09 1.8E-13 98.4 31.0 430 107-569 19-505 (652)
71 KOG1840 Kinesin light chain [C 99.3 3.1E-10 6.8E-15 110.7 21.9 239 261-525 201-477 (508)
72 KOG1174 Anaphase-promoting com 99.3 1.5E-08 3.3E-13 92.4 30.7 266 226-498 230-505 (564)
73 PF12569 NARP1: NMDA receptor- 99.3 1.6E-08 3.4E-13 100.3 33.6 46 478-523 471-516 (517)
74 KOG1125 TPR repeat-containing 99.3 2.3E-10 5E-15 108.7 19.4 261 306-586 296-577 (579)
75 PRK11189 lipoprotein NlpI; Pro 99.3 2.6E-10 5.7E-15 106.9 19.9 185 332-525 66-263 (296)
76 KOG1129 TPR repeat-containing 99.3 7.3E-11 1.6E-15 103.8 14.2 219 335-582 228-455 (478)
77 KOG0624 dsRNA-activated protei 99.3 5.4E-09 1.2E-13 92.9 24.9 298 202-525 43-368 (504)
78 PRK11189 lipoprotein NlpI; Pro 99.3 3.1E-09 6.8E-14 99.7 25.1 234 272-513 39-286 (296)
79 KOG0548 Molecular co-chaperone 99.3 4.7E-09 1E-13 99.2 25.7 166 367-568 304-472 (539)
80 KOG1156 N-terminal acetyltrans 99.3 5.2E-08 1.1E-12 94.2 32.3 100 429-528 366-469 (700)
81 COG3063 PilF Tfp pilus assembl 99.3 3.3E-10 7.2E-15 95.2 15.4 162 398-585 37-202 (250)
82 KOG4318 Bicoid mRNA stability 99.2 6.6E-10 1.4E-14 110.4 19.6 272 280-587 11-283 (1088)
83 KOG1156 N-terminal acetyltrans 99.2 1.3E-07 2.9E-12 91.5 34.3 438 77-524 19-508 (700)
84 KOG3785 Uncharacterized conser 99.2 4.1E-08 8.9E-13 87.8 27.4 410 107-525 29-488 (557)
85 PF13041 PPR_2: PPR repeat fam 99.2 1.9E-11 4.2E-16 79.8 5.0 50 63-112 1-50 (50)
86 PF12569 NARP1: NMDA receptor- 99.2 7.7E-09 1.7E-13 102.4 25.1 295 269-586 14-335 (517)
87 KOG3616 Selective LIM binding 99.2 3.5E-07 7.6E-12 89.6 35.2 385 106-524 738-1181(1636)
88 PF13041 PPR_2: PPR repeat fam 99.2 5.2E-11 1.1E-15 77.8 6.5 50 359-408 1-50 (50)
89 PF04733 Coatomer_E: Coatomer 99.2 1.3E-09 2.8E-14 100.5 16.9 244 267-525 9-263 (290)
90 PRK15359 type III secretion sy 99.2 1.3E-09 2.9E-14 89.7 14.3 124 417-569 14-139 (144)
91 KOG3616 Selective LIM binding 99.1 4.1E-07 8.9E-12 89.1 32.4 258 235-525 739-1022(1636)
92 KOG1127 TPR repeat-containing 99.1 1.3E-07 2.7E-12 95.8 29.2 500 20-525 477-1102(1238)
93 KOG0548 Molecular co-chaperone 99.1 1.2E-07 2.6E-12 89.8 27.2 432 41-523 9-485 (539)
94 KOG0624 dsRNA-activated protei 99.1 8.5E-08 1.8E-12 85.5 22.9 207 266-500 162-377 (504)
95 KOG0985 Vesicle coat protein c 99.1 3E-06 6.5E-11 86.2 36.2 464 35-524 607-1246(1666)
96 PF04733 Coatomer_E: Coatomer 99.1 1.4E-09 3.1E-14 100.2 12.3 249 304-585 10-265 (290)
97 KOG3617 WD40 and TPR repeat-co 99.1 4E-06 8.7E-11 83.5 35.9 204 33-255 756-994 (1416)
98 KOG4340 Uncharacterized conser 99.1 2E-07 4.3E-12 81.6 23.7 406 68-525 13-441 (459)
99 KOG3617 WD40 and TPR repeat-co 99.1 1.2E-07 2.6E-12 93.9 25.0 223 44-285 738-993 (1416)
100 COG5010 TadD Flp pilus assembl 99.0 2.8E-08 6E-13 85.8 16.9 161 393-579 63-225 (257)
101 cd05804 StaR_like StaR_like; a 99.0 9E-07 1.9E-11 86.5 29.5 293 230-526 8-335 (355)
102 TIGR03302 OM_YfiO outer membra 99.0 1.1E-08 2.4E-13 93.3 14.9 181 360-587 32-234 (235)
103 cd05804 StaR_like StaR_like; a 99.0 1.3E-06 2.8E-11 85.3 29.5 305 259-580 6-331 (355)
104 PLN02789 farnesyltranstransfer 99.0 7.4E-08 1.6E-12 90.1 18.9 155 367-525 43-210 (320)
105 PRK10370 formate-dependent nit 99.0 6E-08 1.3E-12 84.5 17.2 144 368-525 23-171 (198)
106 PRK15179 Vi polysaccharide bio 98.9 3.4E-08 7.5E-13 101.7 17.4 93 432-524 86-180 (694)
107 PLN02789 farnesyltranstransfer 98.9 1.8E-07 4E-12 87.5 20.7 203 340-569 47-268 (320)
108 KOG1127 TPR repeat-containing 98.9 5.7E-07 1.2E-11 91.3 25.1 377 151-571 474-899 (1238)
109 PRK04841 transcriptional regul 98.9 4.8E-06 1E-10 92.3 33.1 353 173-526 348-759 (903)
110 KOG0985 Vesicle coat protein c 98.9 1.9E-05 4.2E-10 80.6 32.8 114 259-384 1104-1217(1666)
111 TIGR03302 OM_YfiO outer membra 98.9 1.6E-07 3.4E-12 85.6 17.3 180 327-526 30-231 (235)
112 KOG1125 TPR repeat-containing 98.8 2.3E-07 5E-12 88.8 17.9 249 266-520 292-564 (579)
113 PRK15359 type III secretion sy 98.8 1.1E-07 2.3E-12 78.4 13.0 124 381-510 13-138 (144)
114 KOG4340 Uncharacterized conser 98.8 1.7E-06 3.7E-11 75.9 20.6 177 343-523 125-335 (459)
115 PRK04841 transcriptional regul 98.8 1.1E-05 2.3E-10 89.5 32.1 362 203-582 347-757 (903)
116 KOG0553 TPR repeat-containing 98.8 4.3E-08 9.3E-13 86.4 9.7 111 439-573 88-200 (304)
117 PRK10370 formate-dependent nit 98.8 3.8E-08 8.2E-13 85.8 9.4 142 404-582 24-170 (198)
118 KOG1070 rRNA processing protei 98.8 9.3E-07 2E-11 92.8 20.1 201 327-531 1455-1667(1710)
119 KOG1128 Uncharacterized conser 98.7 2.4E-07 5.2E-12 91.0 13.9 188 326-528 394-583 (777)
120 PRK15179 Vi polysaccharide bio 98.7 9.2E-07 2E-11 91.4 18.8 132 360-495 85-219 (694)
121 TIGR02552 LcrH_SycD type III s 98.7 3.8E-07 8.2E-12 74.9 12.6 94 432-525 17-112 (135)
122 PRK15363 pathogenicity island 98.7 5E-07 1.1E-11 72.9 12.1 94 432-525 35-130 (157)
123 KOG3081 Vesicle coat complex C 98.6 9.6E-06 2.1E-10 70.4 19.6 243 266-525 15-269 (299)
124 PRK14720 transcript cleavage f 98.6 8.9E-06 1.9E-10 85.0 23.4 240 258-575 30-274 (906)
125 PRK15363 pathogenicity island 98.6 1.3E-07 2.9E-12 76.1 7.8 94 463-580 34-127 (157)
126 KOG1128 Uncharacterized conser 98.6 2.2E-06 4.8E-11 84.5 17.4 214 297-528 400-617 (777)
127 COG5010 TadD Flp pilus assembl 98.6 5.2E-06 1.1E-10 72.1 16.9 160 360-523 66-227 (257)
128 COG4783 Putative Zn-dependent 98.6 6.6E-05 1.4E-09 71.2 24.6 176 345-525 252-435 (484)
129 COG4783 Putative Zn-dependent 98.6 1.7E-06 3.6E-11 81.6 14.1 118 437-578 311-430 (484)
130 KOG3060 Uncharacterized conser 98.6 1E-05 2.2E-10 69.6 17.3 179 343-525 25-218 (289)
131 PF14559 TPR_19: Tetratricopep 98.5 1.4E-07 3E-12 66.6 5.2 67 475-565 2-68 (68)
132 KOG3081 Vesicle coat complex C 98.5 7.5E-05 1.6E-09 65.0 22.3 246 241-498 21-276 (299)
133 PF12854 PPR_1: PPR repeat 98.5 1.2E-07 2.6E-12 55.3 3.6 32 130-161 2-33 (34)
134 PF12854 PPR_1: PPR repeat 98.5 1E-07 2.2E-12 55.7 3.0 34 28-61 1-34 (34)
135 KOG1070 rRNA processing protei 98.5 2.2E-05 4.8E-10 83.0 21.8 220 196-417 1457-1692(1710)
136 KOG1914 mRNA cleavage and poly 98.5 0.0014 3.1E-08 63.1 30.9 79 30-111 16-97 (656)
137 PLN03088 SGT1, suppressor of 98.5 2.2E-06 4.7E-11 82.5 12.5 109 439-571 9-119 (356)
138 PF13432 TPR_16: Tetratricopep 98.4 3.7E-07 8E-12 63.7 5.0 56 470-525 3-58 (65)
139 TIGR02795 tol_pal_ybgF tol-pal 98.4 3.1E-06 6.7E-11 67.7 10.9 92 434-525 4-103 (119)
140 PRK14720 transcript cleavage f 98.4 2.8E-05 6E-10 81.4 20.3 235 226-510 29-269 (906)
141 KOG3060 Uncharacterized conser 98.4 3E-05 6.6E-10 66.8 16.8 174 331-507 53-234 (289)
142 PF09295 ChAPs: ChAPs (Chs5p-A 98.4 6.3E-06 1.4E-10 78.8 13.8 122 399-525 172-295 (395)
143 TIGR02552 LcrH_SycD type III s 98.4 1.3E-05 2.7E-10 65.8 13.2 113 383-499 5-120 (135)
144 PRK02603 photosystem I assembl 98.3 7.5E-06 1.6E-10 70.2 12.0 82 432-513 35-121 (172)
145 KOG2053 Mitochondrial inherita 98.3 0.0079 1.7E-07 61.7 34.8 98 46-146 55-155 (932)
146 TIGR02795 tol_pal_ybgF tol-pal 98.3 5.1E-06 1.1E-10 66.4 8.7 98 465-586 3-106 (119)
147 PF09295 ChAPs: ChAPs (Chs5p-A 98.3 4.2E-05 9E-10 73.3 15.9 128 331-462 170-298 (395)
148 PF13414 TPR_11: TPR repeat; P 98.3 1.5E-06 3.2E-11 61.5 4.8 63 463-525 2-65 (69)
149 KOG0550 Molecular chaperone (D 98.2 7.3E-05 1.6E-09 69.1 16.0 155 369-528 177-351 (486)
150 PF13371 TPR_9: Tetratricopept 98.2 5.4E-06 1.2E-10 59.4 7.2 69 472-564 3-71 (73)
151 PF09976 TPR_21: Tetratricopep 98.2 3.9E-05 8.4E-10 63.6 13.3 114 409-523 24-143 (145)
152 KOG1914 mRNA cleavage and poly 98.2 0.0068 1.5E-07 58.6 34.1 203 311-516 309-528 (656)
153 KOG2053 Mitochondrial inherita 98.2 0.011 2.4E-07 60.8 33.6 67 466-532 438-507 (932)
154 PF12895 Apc3: Anaphase-promot 98.2 1.7E-06 3.6E-11 64.0 3.3 78 445-523 2-83 (84)
155 PF09976 TPR_21: Tetratricopep 98.1 0.00019 4.2E-09 59.4 15.5 125 364-491 15-145 (145)
156 PLN03088 SGT1, suppressor of 98.1 7.3E-06 1.6E-10 78.9 7.8 89 471-583 9-97 (356)
157 PF12895 Apc3: Anaphase-promot 98.1 7.5E-07 1.6E-11 65.8 0.7 79 477-580 2-82 (84)
158 cd00189 TPR Tetratricopeptide 98.1 2.6E-05 5.6E-10 59.3 9.3 91 435-525 3-95 (100)
159 KOG0553 TPR repeat-containing 98.1 2.7E-05 5.8E-10 69.1 10.1 95 408-505 93-190 (304)
160 PF04840 Vps16_C: Vps16, C-ter 98.1 0.0063 1.4E-07 57.2 26.2 108 334-458 181-288 (319)
161 CHL00033 ycf3 photosystem I as 98.1 6.3E-05 1.4E-09 64.2 11.9 94 431-524 34-139 (168)
162 TIGR00756 PPR pentatricopeptid 98.1 8.2E-06 1.8E-10 48.5 4.3 34 67-100 2-35 (35)
163 cd00189 TPR Tetratricopeptide 98.0 1.2E-05 2.6E-10 61.1 6.4 93 467-583 3-95 (100)
164 TIGR00756 PPR pentatricopeptid 98.0 1E-05 2.2E-10 48.0 4.7 34 362-395 1-34 (35)
165 COG4700 Uncharacterized protei 98.0 0.00044 9.5E-09 56.8 14.4 149 371-525 66-220 (251)
166 PRK10153 DNA-binding transcrip 98.0 0.00023 5E-09 71.6 15.6 62 463-525 419-480 (517)
167 PF13812 PPR_3: Pentatricopept 98.0 1.1E-05 2.4E-10 47.5 3.9 33 66-98 2-34 (34)
168 PRK10153 DNA-binding transcrip 97.9 0.00043 9.3E-09 69.7 16.6 139 359-499 335-488 (517)
169 PF13812 PPR_3: Pentatricopept 97.9 2.1E-05 4.4E-10 46.3 4.5 33 362-394 2-34 (34)
170 KOG0550 Molecular chaperone (D 97.9 0.00058 1.2E-08 63.4 15.7 161 406-577 259-435 (486)
171 PRK02603 photosystem I assembl 97.9 0.00035 7.5E-09 59.9 13.9 129 362-513 36-166 (172)
172 PRK15331 chaperone protein Sic 97.9 0.00019 4.1E-09 58.5 11.2 88 438-525 43-132 (165)
173 COG4235 Cytochrome c biogenesi 97.9 0.00016 3.6E-09 64.7 11.6 105 429-533 153-262 (287)
174 PF13432 TPR_16: Tetratricopep 97.8 4.8E-05 1.1E-09 52.8 5.5 61 438-498 3-65 (65)
175 CHL00033 ycf3 photosystem I as 97.8 9.5E-05 2.1E-09 63.1 8.3 91 464-578 35-135 (168)
176 PRK10803 tol-pal system protei 97.8 9.6E-05 2.1E-09 67.2 8.3 93 433-525 144-244 (263)
177 KOG0543 FKBP-type peptidyl-pro 97.8 0.00013 2.8E-09 67.8 8.9 110 440-573 216-342 (397)
178 PF14938 SNAP: Soluble NSF att 97.8 0.015 3.3E-07 54.3 22.8 96 364-459 158-264 (282)
179 KOG1130 Predicted G-alpha GTPa 97.7 0.00027 5.8E-09 65.4 10.4 256 268-525 26-342 (639)
180 PRK10803 tol-pal system protei 97.7 0.00033 7.1E-09 63.8 10.8 103 397-499 144-252 (263)
181 PF14938 SNAP: Soluble NSF att 97.7 0.0046 1E-07 57.8 18.6 127 399-525 117-264 (282)
182 PF13431 TPR_17: Tetratricopep 97.7 1.7E-05 3.6E-10 46.2 1.4 34 486-519 1-34 (34)
183 COG3898 Uncharacterized membra 97.7 0.044 9.6E-07 51.0 28.5 277 241-532 97-397 (531)
184 PF04840 Vps16_C: Vps16, C-ter 97.7 0.048 1E-06 51.3 24.3 105 200-317 180-284 (319)
185 PRK10866 outer membrane biogen 97.6 0.0024 5.1E-08 57.8 15.1 195 360-584 31-240 (243)
186 COG4700 Uncharacterized protei 97.6 0.0032 7E-08 51.9 13.9 102 424-525 81-187 (251)
187 PF01535 PPR: PPR repeat; Int 97.6 7.9E-05 1.7E-09 42.6 3.7 31 362-392 1-31 (31)
188 COG4235 Cytochrome c biogenesi 97.6 0.00019 4.2E-09 64.3 7.5 98 461-582 152-253 (287)
189 PF08579 RPM2: Mitochondrial r 97.6 0.00042 9E-09 52.0 7.9 80 68-147 28-116 (120)
190 KOG2041 WD40 repeat protein [G 97.6 0.1 2.2E-06 52.4 27.4 199 97-318 689-901 (1189)
191 PF01535 PPR: PPR repeat; Int 97.6 9.4E-05 2E-09 42.3 3.5 29 67-95 2-30 (31)
192 KOG1130 Predicted G-alpha GTPa 97.6 9.1E-05 2E-09 68.4 4.8 260 303-580 25-339 (639)
193 KOG2280 Vacuolar assembly/sort 97.6 0.11 2.3E-06 52.8 25.9 105 334-454 688-792 (829)
194 PF07079 DUF1347: Protein of u 97.6 0.08 1.7E-06 50.4 33.3 189 331-524 299-521 (549)
195 PF13414 TPR_11: TPR repeat; P 97.6 0.00018 3.9E-09 50.7 5.4 65 431-495 2-69 (69)
196 PF13428 TPR_14: Tetratricopep 97.5 0.00015 3.2E-09 45.5 4.0 43 498-564 1-43 (44)
197 PF14559 TPR_19: Tetratricopep 97.5 0.00011 2.3E-09 51.7 3.6 60 408-469 3-63 (68)
198 PF12688 TPR_5: Tetratrico pep 97.5 0.00049 1.1E-08 53.9 7.1 86 438-523 7-100 (120)
199 KOG2041 WD40 repeat protein [G 97.5 0.16 3.4E-06 51.1 26.0 233 132-389 689-951 (1189)
200 PF12688 TPR_5: Tetratrico pep 97.4 0.0051 1.1E-07 48.2 12.3 93 366-458 6-101 (120)
201 PF10037 MRP-S27: Mitochondria 97.4 0.0015 3.2E-08 63.1 11.2 117 31-147 63-185 (429)
202 PF05843 Suf: Suppressor of fo 97.4 0.0033 7.1E-08 58.4 13.0 131 363-496 3-139 (280)
203 PF07079 DUF1347: Protein of u 97.4 0.14 3.1E-06 48.9 30.3 132 43-178 15-179 (549)
204 PLN03098 LPA1 LOW PSII ACCUMUL 97.4 0.00067 1.4E-08 64.8 8.0 96 431-529 74-176 (453)
205 PF08579 RPM2: Mitochondrial r 97.4 0.0035 7.7E-08 47.2 9.9 79 365-444 29-116 (120)
206 PF13281 DUF4071: Domain of un 97.4 0.023 5.1E-07 53.9 17.8 159 335-496 146-337 (374)
207 PF05843 Suf: Suppressor of fo 97.3 0.0024 5.2E-08 59.4 11.0 128 397-526 2-135 (280)
208 PF13428 TPR_14: Tetratricopep 97.3 0.0003 6.6E-09 44.0 3.2 42 465-506 2-43 (44)
209 PF10037 MRP-S27: Mitochondria 97.3 0.0044 9.4E-08 60.0 12.4 108 328-436 64-177 (429)
210 PF13371 TPR_9: Tetratricopept 97.3 0.00065 1.4E-08 48.4 5.4 64 439-502 2-67 (73)
211 COG3898 Uncharacterized membra 97.3 0.17 3.6E-06 47.3 26.1 243 209-458 132-389 (531)
212 PRK11906 transcriptional regul 97.2 0.0073 1.6E-07 58.1 13.4 65 432-496 338-404 (458)
213 PRK15331 chaperone protein Sic 97.2 0.00049 1.1E-08 56.1 4.9 84 470-577 43-126 (165)
214 KOG1258 mRNA processing protei 97.2 0.28 6.1E-06 48.8 28.3 181 329-512 296-489 (577)
215 PF13525 YfiO: Outer membrane 97.2 0.018 4E-07 50.7 14.8 166 364-573 8-195 (203)
216 PRK10866 outer membrane biogen 97.2 0.1 2.2E-06 47.2 19.7 55 402-456 181-236 (243)
217 KOG2280 Vacuolar assembly/sort 97.2 0.34 7.4E-06 49.3 27.4 115 393-523 681-795 (829)
218 COG4105 ComL DNA uptake lipopr 97.2 0.03 6.5E-07 49.5 15.4 174 368-586 41-234 (254)
219 KOG1538 Uncharacterized conser 97.1 0.099 2.1E-06 52.0 19.6 87 295-390 747-846 (1081)
220 KOG2796 Uncharacterized conser 97.1 0.048 1E-06 47.9 15.6 125 400-525 181-313 (366)
221 PF13431 TPR_17: Tetratricopep 97.1 0.00031 6.7E-09 40.9 1.6 30 548-577 5-34 (34)
222 PF06239 ECSIT: Evolutionarily 97.1 0.0027 5.9E-08 54.2 7.8 98 53-150 33-153 (228)
223 KOG2796 Uncharacterized conser 97.1 0.05 1.1E-06 47.8 15.4 138 261-401 179-324 (366)
224 PF13512 TPR_18: Tetratricopep 97.1 0.017 3.7E-07 46.2 11.8 75 439-513 17-99 (142)
225 PF13424 TPR_12: Tetratricopep 97.0 0.00076 1.7E-08 48.8 3.4 61 465-525 6-73 (78)
226 KOG0543 FKBP-type peptidyl-pro 96.9 0.012 2.6E-07 55.2 11.3 93 433-525 258-353 (397)
227 PLN03098 LPA1 LOW PSII ACCUMUL 96.9 0.00097 2.1E-08 63.8 4.0 59 464-524 75-138 (453)
228 KOG4234 TPR repeat-containing 96.9 0.0078 1.7E-07 50.3 8.6 87 439-525 102-195 (271)
229 PRK11906 transcriptional regul 96.9 0.0059 1.3E-07 58.7 9.0 144 411-579 273-430 (458)
230 COG1729 Uncharacterized protei 96.8 0.014 3.1E-07 51.9 10.5 89 434-525 144-242 (262)
231 PF06239 ECSIT: Evolutionarily 96.8 0.013 2.7E-07 50.3 9.7 96 351-447 35-153 (228)
232 COG1729 Uncharacterized protei 96.8 0.0098 2.1E-07 52.9 9.2 100 465-586 143-245 (262)
233 PF13424 TPR_12: Tetratricopep 96.7 0.0023 4.9E-08 46.3 4.2 60 434-493 7-75 (78)
234 PF09205 DUF1955: Domain of un 96.7 0.05 1.1E-06 42.3 11.1 141 371-530 12-152 (161)
235 COG3118 Thioredoxin domain-con 96.7 0.14 3E-06 46.3 15.5 118 405-525 143-263 (304)
236 KOG1538 Uncharacterized conser 96.7 0.15 3.1E-06 50.9 16.9 217 298-528 601-847 (1081)
237 PF13525 YfiO: Outer membrane 96.7 0.41 8.9E-06 42.1 19.4 178 265-451 11-197 (203)
238 PRK11619 lytic murein transgly 96.6 1.3 2.7E-05 46.6 32.4 114 375-491 255-373 (644)
239 COG5107 RNA14 Pre-mRNA 3'-end 96.5 0.82 1.8E-05 43.8 27.7 128 397-525 398-529 (660)
240 COG5107 RNA14 Pre-mRNA 3'-end 96.5 0.85 1.8E-05 43.7 31.2 93 17-113 27-122 (660)
241 COG0457 NrfG FOG: TPR repeat [ 96.5 0.63 1.4E-05 41.9 26.3 193 331-525 60-263 (291)
242 PF03704 BTAD: Bacterial trans 96.4 0.0095 2.1E-07 49.4 6.6 60 466-525 64-123 (146)
243 KOG1585 Protein required for f 96.4 0.61 1.3E-05 40.9 16.8 86 434-520 152-249 (308)
244 KOG1941 Acetylcholine receptor 96.3 0.06 1.3E-06 49.6 11.2 124 401-524 127-272 (518)
245 KOG2066 Vacuolar assembly/sort 96.3 1.6 3.5E-05 45.0 26.5 142 144-286 365-532 (846)
246 KOG2114 Vacuolar assembly/sort 96.3 1.8 3.9E-05 45.1 25.6 174 68-256 337-518 (933)
247 COG0457 NrfG FOG: TPR repeat [ 96.2 0.93 2E-05 40.7 26.1 219 273-496 37-268 (291)
248 PF10300 DUF3808: Protein of u 96.1 0.2 4.3E-06 50.4 15.2 114 409-525 246-374 (468)
249 PF09613 HrpB1_HrpK: Bacterial 96.1 0.1 2.2E-06 42.7 10.2 50 476-525 22-71 (160)
250 PF00515 TPR_1: Tetratricopept 96.0 0.011 2.3E-07 34.4 3.6 32 465-496 2-33 (34)
251 KOG4555 TPR repeat-containing 96.0 0.06 1.3E-06 41.8 8.1 89 440-528 51-145 (175)
252 PF03704 BTAD: Bacterial trans 96.0 0.072 1.6E-06 44.0 9.6 71 364-435 65-139 (146)
253 PF07719 TPR_2: Tetratricopept 96.0 0.018 3.8E-07 33.4 4.3 32 466-497 3-34 (34)
254 PF12921 ATP13: Mitochondrial 95.8 0.12 2.6E-06 41.1 9.5 50 391-440 47-96 (126)
255 KOG4648 Uncharacterized conser 95.8 0.021 4.6E-07 52.0 5.9 93 403-498 104-199 (536)
256 KOG2610 Uncharacterized conser 95.8 0.074 1.6E-06 48.5 9.1 157 373-532 115-281 (491)
257 COG3118 Thioredoxin domain-con 95.7 1.1 2.4E-05 40.7 15.8 148 369-518 142-292 (304)
258 PF13281 DUF4071: Domain of un 95.6 1 2.3E-05 43.0 16.6 72 233-305 146-227 (374)
259 COG4105 ComL DNA uptake lipopr 95.6 1.6 3.4E-05 39.0 17.6 167 339-524 43-230 (254)
260 PF12921 ATP13: Mitochondrial 95.5 0.25 5.5E-06 39.2 10.4 48 426-473 46-97 (126)
261 PF04184 ST7: ST7 protein; In 95.5 0.35 7.5E-06 47.1 12.9 142 373-526 180-323 (539)
262 KOG2610 Uncharacterized conser 95.5 0.35 7.7E-06 44.3 12.2 181 341-525 114-313 (491)
263 KOG2066 Vacuolar assembly/sort 95.4 4 8.7E-05 42.3 25.9 123 136-259 393-536 (846)
264 PF09205 DUF1955: Domain of un 95.4 1 2.2E-05 35.4 13.6 134 270-425 13-149 (161)
265 KOG1258 mRNA processing protei 95.4 3.5 7.5E-05 41.4 28.5 368 36-407 47-486 (577)
266 PF04053 Coatomer_WDAD: Coatom 95.4 0.93 2E-05 45.0 16.0 76 199-284 297-372 (443)
267 TIGR02561 HrpB1_HrpK type III 95.3 0.31 6.7E-06 39.2 10.1 103 475-586 21-123 (153)
268 PF14853 Fis1_TPR_C: Fis1 C-te 95.3 0.048 1E-06 35.3 4.7 50 500-573 3-52 (53)
269 PF07719 TPR_2: Tetratricopept 95.3 0.017 3.6E-07 33.5 2.5 27 499-525 2-28 (34)
270 KOG1941 Acetylcholine receptor 95.3 0.94 2E-05 42.2 14.2 123 336-458 128-272 (518)
271 PF04053 Coatomer_WDAD: Coatom 95.2 1.8 3.9E-05 43.1 17.4 129 169-319 298-426 (443)
272 smart00299 CLH Clathrin heavy 95.1 1.5 3.2E-05 35.8 15.5 41 301-342 13-53 (140)
273 PF02259 FAT: FAT domain; Int 95.1 2.2 4.8E-05 41.4 18.1 150 360-511 145-305 (352)
274 PF13512 TPR_18: Tetratricopep 95.1 0.62 1.4E-05 37.5 11.2 20 480-499 115-134 (142)
275 PF10300 DUF3808: Protein of u 95.1 1.7 3.6E-05 44.0 17.1 158 263-422 192-373 (468)
276 KOG1920 IkappaB kinase complex 95.0 6.7 0.00015 42.9 25.8 105 403-524 946-1052(1265)
277 KOG3941 Intermediate in Toll s 95.0 0.12 2.6E-06 46.0 7.7 112 51-162 51-186 (406)
278 PF02259 FAT: FAT domain; Int 95.0 3.8 8.2E-05 39.8 19.7 62 396-458 146-210 (352)
279 KOG3364 Membrane protein invol 94.9 0.27 5.9E-06 38.6 8.4 89 461-573 29-122 (149)
280 PF04184 ST7: ST7 protein; In 94.8 3.6 7.7E-05 40.5 17.4 17 481-497 363-379 (539)
281 KOG4555 TPR repeat-containing 94.8 0.072 1.6E-06 41.3 5.1 54 472-525 51-104 (175)
282 PF00515 TPR_1: Tetratricopept 94.8 0.026 5.7E-07 32.7 2.2 27 499-525 2-28 (34)
283 smart00299 CLH Clathrin heavy 94.7 1.9 4.2E-05 35.1 14.6 45 68-113 10-54 (140)
284 PRK09687 putative lyase; Provi 94.7 3.7 8E-05 38.2 26.6 72 430-506 204-275 (280)
285 PF13176 TPR_7: Tetratricopept 94.5 0.055 1.2E-06 31.9 3.2 26 500-525 1-26 (36)
286 PF13181 TPR_8: Tetratricopept 94.5 0.063 1.4E-06 31.0 3.4 31 466-496 3-33 (34)
287 PRK09687 putative lyase; Provi 94.4 4.2 9E-05 37.8 25.0 218 62-288 34-263 (280)
288 KOG1550 Extracellular protein 94.4 7.2 0.00016 40.5 20.5 112 307-424 261-392 (552)
289 KOG1585 Protein required for f 94.4 2.7 5.7E-05 37.1 14.0 92 471-586 157-254 (308)
290 PF06552 TOM20_plant: Plant sp 94.3 0.038 8.2E-07 45.9 2.9 75 480-571 7-84 (186)
291 PF06552 TOM20_plant: Plant sp 94.2 0.09 2E-06 43.7 4.9 70 479-565 50-123 (186)
292 KOG4234 TPR repeat-containing 94.1 0.64 1.4E-05 39.4 9.5 104 406-509 105-213 (271)
293 PF07035 Mic1: Colon cancer-as 94.0 1.4 2.9E-05 36.9 11.3 103 85-193 14-116 (167)
294 KOG3941 Intermediate in Toll s 93.8 0.56 1.2E-05 42.0 9.1 100 349-449 53-175 (406)
295 KOG0890 Protein kinase of the 93.7 20 0.00042 42.8 29.0 64 464-529 1670-1733(2382)
296 PRK10941 hypothetical protein; 93.7 0.53 1.1E-05 43.1 9.2 77 466-566 183-259 (269)
297 PF13176 TPR_7: Tetratricopept 93.7 0.1 2.2E-06 30.7 3.2 28 466-493 1-28 (36)
298 KOG4648 Uncharacterized conser 93.5 0.1 2.2E-06 47.7 4.2 104 439-566 104-209 (536)
299 PF14561 TPR_20: Tetratricopep 93.5 0.18 3.9E-06 37.2 4.9 79 484-584 8-87 (90)
300 KOG1586 Protein required for f 93.3 2.7 5.9E-05 36.8 12.2 62 437-498 118-188 (288)
301 KOG4507 Uncharacterized conser 93.3 0.53 1.2E-05 46.6 8.9 160 393-589 568-735 (886)
302 KOG4642 Chaperone-dependent E3 93.2 0.2 4.2E-06 43.6 5.3 86 440-525 18-105 (284)
303 KOG1464 COP9 signalosome, subu 93.2 6.1 0.00013 35.4 17.5 255 241-502 40-341 (440)
304 COG2976 Uncharacterized protei 93.2 4.9 0.00011 34.3 13.6 110 379-496 70-191 (207)
305 KOG1920 IkappaB kinase complex 93.1 16 0.00035 40.2 21.0 135 339-491 917-1053(1265)
306 COG1747 Uncharacterized N-term 92.9 11 0.00023 37.4 22.8 177 327-510 63-251 (711)
307 PF10602 RPN7: 26S proteasome 92.9 2.7 5.9E-05 35.9 11.9 96 363-458 38-139 (177)
308 COG2976 Uncharacterized protei 92.9 2.5 5.3E-05 36.0 11.0 90 438-528 95-189 (207)
309 PF13170 DUF4003: Protein of u 92.8 1.6 3.4E-05 40.8 11.1 140 4-145 62-227 (297)
310 COG3629 DnrI DNA-binding trans 92.6 0.51 1.1E-05 43.0 7.4 61 466-526 155-215 (280)
311 PF08631 SPO22: Meiosis protei 92.5 9 0.0002 35.7 23.1 22 368-389 128-149 (278)
312 COG4785 NlpI Lipoprotein NlpI, 92.4 4.8 0.0001 34.8 12.2 157 361-525 99-264 (297)
313 PF00637 Clathrin: Region in C 92.1 0.45 9.8E-06 39.1 6.2 129 105-243 12-140 (143)
314 PF09613 HrpB1_HrpK: Bacterial 92.1 3.6 7.8E-05 33.9 11.0 85 407-495 21-108 (160)
315 PF00637 Clathrin: Region in C 92.1 0.0069 1.5E-07 50.0 -4.8 83 301-386 13-95 (143)
316 COG3947 Response regulator con 92.0 6.8 0.00015 35.7 13.2 58 468-525 283-340 (361)
317 KOG0890 Protein kinase of the 92.0 33 0.00072 41.0 25.4 306 171-494 1388-1732(2382)
318 PF07035 Mic1: Colon cancer-as 92.0 6.6 0.00014 32.9 12.6 47 120-166 14-60 (167)
319 PF13174 TPR_6: Tetratricopept 91.9 0.14 3.1E-06 29.1 2.1 26 500-525 2-27 (33)
320 PF13181 TPR_8: Tetratricopept 91.8 0.19 4.1E-06 28.9 2.6 27 499-525 2-28 (34)
321 PF13374 TPR_10: Tetratricopep 91.7 0.36 7.9E-06 29.3 4.0 27 466-492 4-30 (42)
322 PRK15180 Vi polysaccharide bio 91.7 3.5 7.5E-05 40.1 11.8 83 443-525 334-418 (831)
323 KOG4642 Chaperone-dependent E3 91.7 0.42 9.2E-06 41.7 5.4 86 405-493 19-107 (284)
324 KOG1464 COP9 signalosome, subu 91.6 7 0.00015 35.0 12.8 181 344-524 41-257 (440)
325 PF08631 SPO22: Meiosis protei 91.3 12 0.00027 34.7 23.7 99 297-396 86-192 (278)
326 KOG0376 Serine-threonine phosp 90.9 0.37 8E-06 46.7 4.8 87 439-525 11-99 (476)
327 KOG0545 Aryl-hydrocarbon recep 90.7 1.3 2.9E-05 38.9 7.4 87 439-525 185-291 (329)
328 COG4455 ImpE Protein of avirul 90.5 2.2 4.8E-05 36.8 8.4 58 439-496 8-67 (273)
329 PF07721 TPR_4: Tetratricopept 90.1 0.35 7.5E-06 25.9 2.4 24 499-522 2-25 (26)
330 KOG3824 Huntingtin interacting 90.1 0.52 1.1E-05 42.7 4.7 50 475-524 127-176 (472)
331 PF04910 Tcf25: Transcriptiona 90.1 12 0.00026 36.3 14.3 63 463-525 99-166 (360)
332 KOG1586 Protein required for f 90.0 13 0.00028 32.8 15.4 57 443-499 165-230 (288)
333 COG3629 DnrI DNA-binding trans 89.9 3.4 7.4E-05 37.8 9.8 76 364-440 156-235 (280)
334 KOG0530 Protein farnesyltransf 89.8 15 0.00032 33.1 13.5 123 448-570 94-236 (318)
335 PF11207 DUF2989: Protein of u 89.5 4.8 0.0001 34.6 9.7 75 444-518 118-198 (203)
336 PF02284 COX5A: Cytochrome c o 89.4 2.8 6E-05 31.3 7.1 60 379-440 28-87 (108)
337 PF10602 RPN7: 26S proteasome 89.4 5.4 0.00012 34.1 10.3 62 261-323 38-101 (177)
338 PF13174 TPR_6: Tetratricopept 89.3 0.53 1.1E-05 26.7 2.9 29 469-497 5-33 (33)
339 COG1747 Uncharacterized N-term 89.2 25 0.00054 35.0 20.4 155 262-424 69-233 (711)
340 PRK13800 putative oxidoreducta 89.1 42 0.00091 37.5 26.6 259 187-466 625-886 (897)
341 KOG4570 Uncharacterized conser 89.1 2.4 5.1E-05 38.8 8.0 48 115-162 115-162 (418)
342 PF13170 DUF4003: Protein of u 88.7 19 0.00041 33.8 14.1 64 378-442 160-227 (297)
343 cd00923 Cyt_c_Oxidase_Va Cytoc 88.4 4.3 9.3E-05 30.0 7.4 63 376-440 22-84 (103)
344 COG4976 Predicted methyltransf 88.3 0.94 2E-05 39.3 4.8 53 473-525 4-56 (287)
345 KOG0276 Vesicle coat complex C 88.0 11 0.00023 38.1 12.2 149 343-524 599-747 (794)
346 PF14853 Fis1_TPR_C: Fis1 C-te 88.0 1.2 2.7E-05 28.9 4.1 32 469-500 6-37 (53)
347 KOG4507 Uncharacterized conser 87.9 1.4 3.1E-05 43.7 6.4 102 407-509 618-721 (886)
348 COG4785 NlpI Lipoprotein NlpI, 87.9 18 0.00038 31.6 18.3 178 308-495 78-268 (297)
349 PF13374 TPR_10: Tetratricopep 87.7 0.8 1.7E-05 27.7 3.2 27 499-525 3-29 (42)
350 smart00028 TPR Tetratricopepti 87.5 1.1 2.4E-05 24.6 3.6 30 467-496 4-33 (34)
351 KOG2396 HAT (Half-A-TPR) repea 87.2 34 0.00073 34.0 26.1 66 64-130 104-170 (568)
352 COG4649 Uncharacterized protei 86.8 17 0.00037 30.4 15.3 122 371-492 68-195 (221)
353 cd00923 Cyt_c_Oxidase_Va Cytoc 86.6 4 8.7E-05 30.1 6.4 63 80-143 22-84 (103)
354 KOG4570 Uncharacterized conser 85.9 6.4 0.00014 36.2 8.8 101 324-425 58-164 (418)
355 PF04097 Nic96: Nup93/Nic96; 85.3 54 0.0012 34.7 23.2 70 66-136 112-188 (613)
356 KOG1308 Hsp70-interacting prot 84.9 0.82 1.8E-05 42.3 2.9 85 444-528 126-212 (377)
357 PF02284 COX5A: Cytochrome c o 84.9 4.1 8.8E-05 30.4 5.9 61 82-143 27-87 (108)
358 KOG2114 Vacuolar assembly/sort 84.7 60 0.0013 34.6 27.8 180 34-225 334-518 (933)
359 PRK11619 lytic murein transgly 84.7 59 0.0013 34.5 35.7 435 75-533 43-511 (644)
360 KOG0551 Hsp90 co-chaperone CNS 84.5 9.1 0.0002 35.6 9.2 125 434-568 83-213 (390)
361 smart00028 TPR Tetratricopepti 83.7 1.8 3.9E-05 23.7 3.3 27 499-525 2-28 (34)
362 TIGR02561 HrpB1_HrpK type III 83.7 7.2 0.00016 31.7 7.3 58 397-459 8-71 (153)
363 KOG0276 Vesicle coat complex C 83.4 19 0.0004 36.6 11.4 44 240-285 649-692 (794)
364 KOG1550 Extracellular protein 82.1 69 0.0015 33.4 23.0 243 271-526 261-537 (552)
365 PRK15180 Vi polysaccharide bio 81.7 12 0.00026 36.6 9.2 89 406-496 333-423 (831)
366 PRK13800 putative oxidoreducta 81.1 1E+02 0.0022 34.6 28.4 254 155-424 624-880 (897)
367 PF09986 DUF2225: Uncharacteri 80.8 8.1 0.00018 34.2 7.5 63 466-528 120-195 (214)
368 PF07721 TPR_4: Tetratricopept 80.4 3.7 8.1E-05 21.8 3.3 20 437-456 6-25 (26)
369 PF10579 Rapsyn_N: Rapsyn N-te 80.2 3 6.6E-05 29.4 3.6 46 475-520 17-65 (80)
370 PF10345 Cohesin_load: Cohesin 80.2 85 0.0018 33.3 31.3 48 477-524 547-603 (608)
371 KOG2471 TPR repeat-containing 79.9 67 0.0015 31.9 14.2 102 339-443 249-380 (696)
372 COG4649 Uncharacterized protei 79.6 36 0.00078 28.6 15.6 53 372-424 143-195 (221)
373 TIGR03504 FimV_Cterm FimV C-te 79.3 3.7 8.1E-05 25.4 3.5 26 502-527 3-28 (44)
374 PF11207 DUF2989: Protein of u 78.9 21 0.00045 30.9 8.9 73 378-451 123-197 (203)
375 KOG2422 Uncharacterized conser 78.6 33 0.00071 34.7 11.2 53 472-524 350-404 (665)
376 TIGR02270 conserved hypothetic 78.2 75 0.0016 31.5 24.2 231 72-319 45-276 (410)
377 KOG1308 Hsp70-interacting prot 77.7 0.73 1.6E-05 42.6 0.0 52 474-525 124-175 (377)
378 TIGR02508 type_III_yscG type I 77.2 28 0.00061 26.1 9.0 60 338-400 47-106 (115)
379 smart00386 HAT HAT (Half-A-TPR 77.0 3.9 8.5E-05 22.7 3.1 30 478-507 1-30 (33)
380 TIGR02508 type_III_yscG type I 76.6 29 0.00064 26.0 9.4 59 236-298 47-105 (115)
381 KOG2063 Vacuolar assembly/sort 76.0 1.2E+02 0.0025 33.3 15.2 40 49-93 493-532 (877)
382 PF10579 Rapsyn_N: Rapsyn N-te 75.7 8.9 0.00019 27.2 4.9 46 408-453 18-64 (80)
383 PF09986 DUF2225: Uncharacteri 75.6 7.7 0.00017 34.3 5.8 94 474-585 87-194 (214)
384 KOG4279 Serine/threonine prote 75.6 33 0.00072 35.8 10.6 183 261-496 203-398 (1226)
385 TIGR03504 FimV_Cterm FimV C-te 74.3 8 0.00017 23.9 3.9 24 367-390 5-28 (44)
386 PRK10941 hypothetical protein; 73.7 19 0.00042 33.1 8.1 66 435-500 184-251 (269)
387 COG2912 Uncharacterized conser 73.5 13 0.00029 33.7 6.8 56 470-525 187-242 (269)
388 PRK12798 chemotaxis protein; R 73.1 97 0.0021 30.3 24.5 206 343-573 125-348 (421)
389 PF09670 Cas_Cas02710: CRISPR- 72.9 65 0.0014 31.6 12.0 53 371-424 141-197 (379)
390 KOG0403 Neoplastic transformat 72.2 1E+02 0.0023 30.3 18.5 70 334-407 513-585 (645)
391 PF13929 mRNA_stabil: mRNA sta 72.2 83 0.0018 29.1 13.2 136 275-410 144-292 (292)
392 KOG2063 Vacuolar assembly/sort 72.0 1.6E+02 0.0035 32.3 17.2 27 262-288 507-533 (877)
393 PF12968 DUF3856: Domain of Un 71.9 45 0.00098 26.0 8.1 60 433-492 56-128 (144)
394 PF12862 Apc5: Anaphase-promot 71.1 17 0.00037 27.1 6.0 51 475-525 9-68 (94)
395 KOG2581 26S proteasome regulat 70.9 1E+02 0.0023 29.9 12.0 93 404-496 177-279 (493)
396 PF13762 MNE1: Mitochondrial s 70.6 28 0.0006 28.4 7.3 79 69-147 43-127 (145)
397 COG0790 FOG: TPR repeat, SEL1 70.4 95 0.0021 29.0 18.9 146 376-528 92-267 (292)
398 KOG2396 HAT (Half-A-TPR) repea 70.1 1.3E+02 0.0027 30.3 34.2 242 276-525 299-557 (568)
399 PF07163 Pex26: Pex26 protein; 69.7 61 0.0013 29.7 9.8 85 368-455 90-181 (309)
400 PF08311 Mad3_BUB1_I: Mad3/BUB 69.1 29 0.00063 27.6 7.2 42 482-523 81-124 (126)
401 KOG3807 Predicted membrane pro 68.5 1.1E+02 0.0023 28.8 12.5 19 481-499 379-397 (556)
402 KOG4077 Cytochrome c oxidase, 68.2 24 0.00052 27.7 6.1 59 83-142 67-125 (149)
403 KOG3364 Membrane protein invol 68.0 22 0.00049 28.3 6.0 71 429-499 29-106 (149)
404 PF07163 Pex26: Pex26 protein; 67.8 75 0.0016 29.1 9.9 86 266-353 90-181 (309)
405 PF07720 TPR_3: Tetratricopept 66.8 18 0.0004 21.2 4.2 28 469-496 6-35 (36)
406 KOG4077 Cytochrome c oxidase, 66.1 40 0.00087 26.5 6.9 70 379-459 67-136 (149)
407 KOG0376 Serine-threonine phosp 65.7 4 8.7E-05 39.9 2.0 95 471-567 11-117 (476)
408 PF14863 Alkyl_sulf_dimr: Alky 65.6 19 0.00042 29.2 5.6 63 448-513 57-119 (141)
409 PF10345 Cohesin_load: Cohesin 65.1 1.9E+02 0.0042 30.7 31.2 156 35-191 60-250 (608)
410 PHA02875 ankyrin repeat protei 65.0 1.5E+02 0.0033 29.4 17.0 137 20-161 16-158 (413)
411 KOG4814 Uncharacterized conser 65.0 18 0.00039 36.9 6.2 84 442-525 364-455 (872)
412 COG4455 ImpE Protein of avirul 63.0 1.1E+02 0.0024 27.0 12.5 125 363-498 3-139 (273)
413 COG3947 Response regulator con 62.9 33 0.00071 31.5 6.8 52 73-125 287-338 (361)
414 cd08819 CARD_MDA5_2 Caspase ac 62.7 27 0.00057 25.4 5.1 63 119-183 21-83 (88)
415 COG5191 Uncharacterized conser 62.6 27 0.00059 32.3 6.3 81 427-507 102-185 (435)
416 PF12968 DUF3856: Domain of Un 62.5 59 0.0013 25.4 7.1 61 464-524 55-126 (144)
417 PF12862 Apc5: Anaphase-promot 62.4 62 0.0013 24.0 7.6 53 372-424 9-69 (94)
418 PF13762 MNE1: Mitochondrial s 61.3 87 0.0019 25.6 8.4 92 24-115 27-130 (145)
419 KOG4521 Nuclear pore complex, 60.9 2.9E+02 0.0062 31.2 14.8 59 399-457 986-1046(1480)
420 PF09477 Type_III_YscG: Bacter 60.8 73 0.0016 24.3 9.6 81 112-195 18-98 (116)
421 PF11846 DUF3366: Domain of un 60.6 34 0.00074 29.7 6.8 34 462-495 142-175 (193)
422 COG5159 RPN6 26S proteasome re 60.1 1.4E+02 0.0031 27.5 13.1 55 367-421 9-70 (421)
423 PF10366 Vps39_1: Vacuolar sor 59.9 77 0.0017 24.4 7.7 28 362-389 40-67 (108)
424 PF09477 Type_III_YscG: Bacter 59.5 77 0.0017 24.2 8.7 51 339-391 49-99 (116)
425 cd00280 TRFH Telomeric Repeat 57.2 60 0.0013 27.6 7.0 27 473-500 120-146 (200)
426 PF04097 Nic96: Nup93/Nic96; 56.7 2.7E+02 0.0059 29.6 22.9 87 438-525 420-532 (613)
427 TIGR02270 conserved hypothetic 55.4 2.2E+02 0.0049 28.3 23.8 172 107-284 45-216 (410)
428 KOG3824 Huntingtin interacting 55.1 17 0.00038 33.3 3.9 59 444-502 128-188 (472)
429 COG4976 Predicted methyltransf 54.9 27 0.00059 30.8 4.8 54 444-497 7-62 (287)
430 PF11846 DUF3366: Domain of un 54.5 50 0.0011 28.7 6.8 51 408-458 120-170 (193)
431 PF14863 Alkyl_sulf_dimr: Alky 53.9 34 0.00073 27.8 5.1 58 499-580 71-128 (141)
432 PF04190 DUF410: Protein of un 53.6 1.8E+02 0.004 26.7 17.2 29 328-356 88-116 (260)
433 KOG0686 COP9 signalosome, subu 52.9 2.3E+02 0.005 27.7 13.1 58 332-389 152-215 (466)
434 cd08819 CARD_MDA5_2 Caspase ac 51.8 93 0.002 22.8 7.2 39 342-381 48-86 (88)
435 COG4941 Predicted RNA polymera 51.5 1.4E+02 0.003 28.3 9.0 119 376-498 271-399 (415)
436 COG2909 MalT ATP-dependent tra 50.9 3.7E+02 0.008 29.4 24.8 218 239-457 426-684 (894)
437 KOG0545 Aryl-hydrocarbon recep 50.7 50 0.0011 29.5 5.8 60 466-525 180-257 (329)
438 PF14561 TPR_20: Tetratricopep 50.6 1E+02 0.0022 22.8 7.3 61 463-523 21-84 (90)
439 PF11768 DUF3312: Protein of u 50.3 2.5E+02 0.0054 28.8 11.2 24 334-357 412-435 (545)
440 PF14689 SPOB_a: Sensor_kinase 49.3 37 0.00081 22.9 4.0 25 399-423 26-50 (62)
441 PF00244 14-3-3: 14-3-3 protei 48.3 2.1E+02 0.0045 25.9 14.4 162 366-528 6-199 (236)
442 PF04781 DUF627: Protein of un 48.3 84 0.0018 24.2 6.1 100 404-523 4-103 (111)
443 KOG2659 LisH motif-containing 47.8 2E+02 0.0044 25.6 9.3 107 381-492 13-131 (228)
444 KOG4814 Uncharacterized conser 47.6 1.9E+02 0.0041 30.1 9.9 86 407-494 365-458 (872)
445 PF12796 Ank_2: Ankyrin repeat 47.2 89 0.0019 22.5 6.3 17 44-60 4-20 (89)
446 PF10366 Vps39_1: Vacuolar sor 46.9 1.3E+02 0.0029 23.1 7.3 27 67-93 41-67 (108)
447 cd00280 TRFH Telomeric Repeat 46.5 1.9E+02 0.0041 24.8 10.7 65 412-476 85-155 (200)
448 COG5159 RPN6 26S proteasome re 46.2 2.5E+02 0.0053 26.0 18.4 190 234-424 9-234 (421)
449 PF02184 HAT: HAT (Half-A-TPR) 45.8 43 0.00092 19.1 3.1 27 479-506 2-28 (32)
450 PF10516 SHNi-TPR: SHNi-TPR; 45.7 40 0.00087 20.1 3.2 27 499-525 2-28 (38)
451 KOG0686 COP9 signalosome, subu 45.3 3.1E+02 0.0067 26.9 13.2 58 230-287 152-215 (466)
452 COG0735 Fur Fe2+/Zn2+ uptake r 45.3 1E+02 0.0022 25.2 6.8 63 86-149 7-69 (145)
453 COG5191 Uncharacterized conser 45.2 45 0.00098 30.9 4.9 77 393-471 104-183 (435)
454 PF11848 DUF3368: Domain of un 45.1 66 0.0014 20.3 4.4 32 112-143 14-45 (48)
455 KOG2422 Uncharacterized conser 44.7 2.5E+02 0.0054 28.9 10.2 24 35-58 285-308 (665)
456 KOG0292 Vesicle coat complex C 44.5 31 0.00068 36.8 4.3 47 443-492 654-700 (1202)
457 KOG2659 LisH motif-containing 44.0 2.4E+02 0.0051 25.2 11.0 96 360-458 25-129 (228)
458 PF11663 Toxin_YhaV: Toxin wit 43.9 29 0.00062 27.7 3.1 32 373-406 107-138 (140)
459 KOG2300 Uncharacterized conser 43.5 3.6E+02 0.0078 27.2 32.2 422 106-573 13-542 (629)
460 PF04910 Tcf25: Transcriptiona 43.5 3.2E+02 0.007 26.6 14.1 86 439-524 110-219 (360)
461 cd08326 CARD_CASP9 Caspase act 43.4 60 0.0013 23.6 4.5 35 147-181 42-76 (84)
462 PF10255 Paf67: RNA polymerase 43.0 1.2E+02 0.0025 30.0 7.7 60 400-459 126-191 (404)
463 PF08424 NRDE-2: NRDE-2, neces 42.8 3.1E+02 0.0067 26.2 14.6 115 377-494 47-184 (321)
464 PF10255 Paf67: RNA polymerase 42.1 1.6E+02 0.0035 29.0 8.5 55 232-286 126-191 (404)
465 PF11838 ERAP1_C: ERAP1-like C 41.0 3.2E+02 0.007 25.9 19.5 82 412-493 146-230 (324)
466 PF11817 Foie-gras_1: Foie gra 41.0 91 0.002 28.4 6.5 21 438-458 184-204 (247)
467 KOG0991 Replication factor C, 40.9 2.7E+02 0.0059 25.0 11.1 55 350-406 228-282 (333)
468 PRK10564 maltose regulon perip 40.8 57 0.0012 30.3 5.0 39 363-401 259-297 (303)
469 PF11817 Foie-gras_1: Foie gra 40.4 95 0.002 28.3 6.5 55 470-524 184-244 (247)
470 PF10373 EST1_DNA_bind: Est1 D 40.3 94 0.002 28.7 6.8 62 483-568 1-62 (278)
471 KOG1310 WD40 repeat protein [G 40.3 51 0.0011 33.1 4.8 41 482-522 429-469 (758)
472 KOG2471 TPR repeat-containing 38.9 4.3E+02 0.0093 26.7 11.8 61 470-533 212-272 (696)
473 PF12926 MOZART2: Mitotic-spin 38.0 1.3E+02 0.0028 21.9 5.3 45 17-61 26-70 (88)
474 KOG2297 Predicted translation 38.0 3.5E+02 0.0075 25.4 10.0 17 434-450 323-339 (412)
475 PF04190 DUF410: Protein of un 37.7 3.3E+02 0.0071 25.1 18.6 82 196-288 89-170 (260)
476 PRK13342 recombination factor 37.0 4.4E+02 0.0095 26.3 17.6 44 363-406 229-275 (413)
477 smart00777 Mad3_BUB1_I Mad3/BU 36.9 1E+02 0.0022 24.5 5.3 40 483-522 82-123 (125)
478 COG3914 Spy Predicted O-linked 36.6 94 0.002 31.8 6.1 98 460-580 63-166 (620)
479 KOG4567 GTPase-activating prot 36.3 3.6E+02 0.0079 25.3 9.1 88 120-208 263-360 (370)
480 PF09670 Cas_Cas02710: CRISPR- 36.2 3E+02 0.0065 27.1 9.6 55 74-129 140-198 (379)
481 PF06957 COPI_C: Coatomer (COP 35.7 3.1E+02 0.0066 27.3 9.3 42 455-496 289-332 (422)
482 PF11848 DUF3368: Domain of un 35.7 1.2E+02 0.0025 19.2 5.2 33 372-404 13-45 (48)
483 PRK10564 maltose regulon perip 35.3 1E+02 0.0022 28.7 5.7 31 298-328 260-290 (303)
484 COG5108 RPO41 Mitochondrial DN 34.9 1.7E+02 0.0037 30.6 7.5 46 366-411 33-80 (1117)
485 PF14689 SPOB_a: Sensor_kinase 34.8 1.4E+02 0.003 20.1 5.0 24 298-321 26-49 (62)
486 KOG0530 Protein farnesyltransf 34.7 3.7E+02 0.0079 24.7 9.2 118 442-583 53-174 (318)
487 PF14669 Asp_Glu_race_2: Putat 34.4 3.1E+02 0.0067 23.8 9.2 40 94-133 2-45 (233)
488 COG2256 MGS1 ATPase related to 34.3 4.7E+02 0.01 25.8 12.7 52 257-309 244-298 (436)
489 PRK09462 fur ferric uptake reg 34.0 1.8E+02 0.0038 23.9 6.6 60 90-150 7-67 (148)
490 KOG0551 Hsp90 co-chaperone CNS 33.3 1.5E+02 0.0032 28.1 6.3 86 467-576 84-173 (390)
491 COG0735 Fur Fe2+/Zn2+ uptake r 33.3 2.4E+02 0.0052 23.1 7.2 32 367-398 26-57 (145)
492 PRK09857 putative transposase; 33.2 2.1E+02 0.0046 26.8 7.7 65 468-532 210-274 (292)
493 KOG0292 Vesicle coat complex C 33.2 2.5E+02 0.0054 30.6 8.5 132 144-289 652-783 (1202)
494 cd08323 CARD_APAF1 Caspase act 33.1 1.8E+02 0.004 21.2 5.7 34 147-180 40-73 (86)
495 cd08326 CARD_CASP9 Caspase act 32.4 96 0.0021 22.6 4.1 14 274-287 45-58 (84)
496 KOG2908 26S proteasome regulat 32.1 4.1E+02 0.0089 25.4 8.9 87 331-417 76-178 (380)
497 KOG4279 Serine/threonine prote 31.9 1E+02 0.0023 32.5 5.6 23 474-496 297-319 (1226)
498 smart00638 LPD_N Lipoprotein N 31.1 6.5E+02 0.014 26.5 18.6 252 18-271 294-574 (574)
499 PRK11639 zinc uptake transcrip 30.9 1.8E+02 0.004 24.6 6.3 37 114-150 39-75 (169)
500 PF10475 DUF2450: Protein of u 30.6 2E+02 0.0043 27.0 7.1 28 429-456 194-221 (291)
No 1
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=1.5e-81 Score=676.07 Aligned_cols=570 Identities=34% Similarity=0.599 Sum_probs=553.0
Q ss_pred ccHHHHHHhccCCchH---HHHHHHHHHhCCCCCccchHHHHHHHHccCChhHHHHHhhcCCCCCcccHHHHHHHHHcCC
Q 007808 3 DTTGAHSEQLETTKHL---HQIQTQVVTSGLEKSDYITPRIITACAQLKQMTYARKMFDKITDQNVVSWNAMFNGYAQNE 79 (589)
Q Consensus 3 ~~~~~~~~~~~~~~~~---~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~ 79 (589)
.++.+++++|+..+.+ .++|..+.+.|+.||..+++.++.+|++.|++++|.++|++|++||..+||++|.+|++.|
T Consensus 188 ~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~~d~~s~n~li~~~~~~g 267 (857)
T PLN03077 188 YTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENG 267 (857)
T ss_pred hHHHHHHHHhCCccchhhHHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCCCCCcchhHHHHHHHHhCC
Confidence 3577888999876654 7999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChhHHHHHHHHhhhCCCCCCcccHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchHHHhHHHHHHHcCCChHHHHHHHc
Q 007808 80 FHRTVVVLFTQMKKLDAMPNCFTFPIVLKSCVKINALREGEELHCLVLKNGFRANIFVGTALIELYSTGKAIEAAYKVFG 159 (589)
Q Consensus 80 ~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 159 (589)
++++|+++|++|.+.|+.||..||+.++.+|++.|+.+.+.+++..|.+.|+.||..+|+.|+.+|++.|++++|.++|+
T Consensus 268 ~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~ 347 (857)
T PLN03077 268 ECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFS 347 (857)
T ss_pred CHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCeehHHHHHHHHHhCCCHHHHHHHHHhCC----CCChhHHHHHHHHHhcCCChHHHHHHhcccCC----CChhhH
Q 007808 160 EMDERNVVVWTSMINGYISCGDIVSARCLFELAP----ERDVILWNTIVSGYIDVRNMIEARKLFDQMPK----KDVISW 231 (589)
Q Consensus 160 ~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~----~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~----~~~~~~ 231 (589)
+|.++|..+|+.++.+|++.|++++|.++|++|. .||..+|+.++.+|++.|++++|.++++.+.+ ++..+|
T Consensus 348 ~m~~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~ 427 (857)
T PLN03077 348 RMETKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVA 427 (857)
T ss_pred hCCCCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHH
Confidence 9999999999999999999999999999999884 57999999999999999999999999999875 789999
Q ss_pred HHHHHHHHhcCCHHHHHHHHhhCCCCCchhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHhcCCh
Q 007808 232 NTMLSGYANNGDVEECKRLFEEMPERNVFSWNGLIGGYANNGLFFEVLDAFKRMLTEGRVFPNDATIVTVLSACARLGAL 311 (589)
Q Consensus 232 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~ 311 (589)
+.|+++|++.|++++|.++|++|.++|..+|+.++.+|++.|+.++|+.+|++|.. + +.||..||+.++.+|++.|++
T Consensus 428 n~Li~~y~k~g~~~~A~~vf~~m~~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~-~~pd~~t~~~lL~a~~~~g~l 505 (857)
T PLN03077 428 NALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLL-T-LKPNSVTLIAALSACARIGAL 505 (857)
T ss_pred HHHHHHHHHcCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-C-CCCCHhHHHHHHHHHhhhchH
Confidence 99999999999999999999999999999999999999999999999999999986 5 899999999999999999999
Q ss_pred hHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHhhCCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHHCC
Q 007808 312 DFSKWVHVYAEYNGYQGNVCVGNALIDMYAKCGIIENAVDVFNSMDTKDLITWNTIISGLAMHGRGAGALSLFHEMKNAG 391 (589)
Q Consensus 312 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~ 391 (589)
+.+.+++..+.+.|+.++..++++|+++|++.|++++|.++|+.+ .+|..+|++||.+|++.|+.++|+++|++|.+.|
T Consensus 506 ~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~-~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g 584 (857)
T PLN03077 506 MCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH-EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESG 584 (857)
T ss_pred HHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc-CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 999999999999999999999999999999999999999999999 8999999999999999999999999999999999
Q ss_pred CCCCHhHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCCHHHHHHHH
Q 007808 392 EMPDGITFIGILCACTHMGLVEEGLSYFQSMAMDYSIVPQIEHYGCMVDLLARAGRLAEAVDFVKRMPIEADAVIWANLL 471 (589)
Q Consensus 392 ~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~ 471 (589)
+.||..||+.++.+|.+.|++++|.++|+.|.+++++.|+..+|+.++++|++.|++++|.+++++|+++||..+|++|+
T Consensus 585 ~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m~~~pd~~~~~aLl 664 (857)
T PLN03077 585 VNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMPITPDPAVWGALL 664 (857)
T ss_pred CCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHCCCCCCHHHHHHHH
Confidence 99999999999999999999999999999998788999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCCHHHHHHHHHHHHccCCCCCcchHHHHHHHhhcCChHHHHHHHHHhhhCCCccCCccceeeeCCeeeee--cc
Q 007808 472 GSCRVYKNVELAELALERLTELEPKNPANFVMLSNIYGDLGRWKDVARIKVAMRDTGFKKLPGCSSIEVNEVVMLG--CL 549 (589)
Q Consensus 472 ~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~ 549 (589)
.+|...|+.+.++...+++++++|+++..|..|+++|...|+|++|.++.+.|++.|++++||++|++++..++.+ .+
T Consensus 665 ~ac~~~~~~e~~e~~a~~l~~l~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~~g~~k~~g~s~ie~~~~~~~f~~~d 744 (857)
T PLN03077 665 NACRIHRHVELGELAAQHIFELDPNSVGYYILLCNLYADAGKWDEVARVRKTMRENGLTVDPGCSWVEVKGKVHAFLTDD 744 (857)
T ss_pred HHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCCCCccEEEECCEEEEEecCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999 77
Q ss_pred ccCCCchHHHHHHHHHHHHcccCCCC
Q 007808 550 SRELDRKSIVRAEANMIKLLPQNNHP 575 (589)
Q Consensus 550 ~~~p~~~~~~~~l~~~~~~~~~~~~~ 575 (589)
..||+...|+..|..+..++.+.+..
T Consensus 745 ~~h~~~~~i~~~l~~l~~~~~~~g~~ 770 (857)
T PLN03077 745 ESHPQIKEINTVLEGFYEKMKASGLA 770 (857)
T ss_pred CCCcchHHHHHHHHHHHHHHHhCCcC
Confidence 88999999999999999999887763
No 2
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=3.9e-75 Score=626.40 Aligned_cols=572 Identities=25% Similarity=0.431 Sum_probs=518.3
Q ss_pred cHHHHHHhccCCch---HHHHHHHHHHhCCCCCccchHHHHHHHHccCChhHHHHHhhcCCCCCcccHHHHHHHHHcCCC
Q 007808 4 TTGAHSEQLETTKH---LHQIQTQVVTSGLEKSDYITPRIITACAQLKQMTYARKMFDKITDQNVVSWNAMFNGYAQNEF 80 (589)
Q Consensus 4 ~~~~~~~~~~~~~~---~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~ 80 (589)
++.++++.|...+. ..++|..+.+.|..++..++|.++..|++.|+++.|.++|++|++||..+||.+|.+|++.|+
T Consensus 88 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~n~li~~~~~~g~~~~A~~~f~~m~~~d~~~~n~li~~~~~~g~ 167 (857)
T PLN03077 88 AYVALFRLCEWKRAVEEGSRVCSRALSSHPSLGVRLGNAMLSMFVRFGELVHAWYVFGKMPERDLFSWNVLVGGYAKAGY 167 (857)
T ss_pred HHHHHHHHHhhCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHhCCChHHHHHHHhcCCCCCeeEHHHHHHHHHhCCC
Confidence 45677777866554 478999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHhhhCCCCCCcccHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchHHHhHHHHHHHcCCChHHHHHHHcc
Q 007808 81 HRTVVVLFTQMKKLDAMPNCFTFPIVLKSCVKINALREGEELHCLVLKNGFRANIFVGTALIELYSTGKAIEAAYKVFGE 160 (589)
Q Consensus 81 ~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 160 (589)
+++|+++|++|...|+.||..||+.++++|+..+++..+.+++..+.+.|+.||..++++|+.+|++.|++++|.++|++
T Consensus 168 ~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~ 247 (857)
T PLN03077 168 FDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDR 247 (857)
T ss_pred HHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhhHHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCeehHHHHHHHHHhCCCHHHHHHHHHhCC----CCChhHHHHHHHHHhcCCChHHHHHHhcccCC----CChhhHH
Q 007808 161 MDERNVVVWTSMINGYISCGDIVSARCLFELAP----ERDVILWNTIVSGYIDVRNMIEARKLFDQMPK----KDVISWN 232 (589)
Q Consensus 161 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~----~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~----~~~~~~~ 232 (589)
|+++|.++|+++|.+|++.|++++|+++|++|. .||..||+.++.+|.+.|+.+.+.+++..+.+ ||..+|+
T Consensus 248 m~~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n 327 (857)
T PLN03077 248 MPRRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCN 327 (857)
T ss_pred CCCCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHH
Confidence 999999999999999999999999999999985 57999999999999999999999999999875 8999999
Q ss_pred HHHHHHHhcCCHHHHHHHHhhCCCCCchhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHhcCChh
Q 007808 233 TMLSGYANNGDVEECKRLFEEMPERNVFSWNGLIGGYANNGLFFEVLDAFKRMLTEGRVFPNDATIVTVLSACARLGALD 312 (589)
Q Consensus 233 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~ 312 (589)
.++.+|++.|++++|.++|++|.+||..+|+.++.+|++.|++++|+++|++|.+.| +.||..||+.++.+|++.|+++
T Consensus 328 ~Li~~y~k~g~~~~A~~vf~~m~~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g-~~Pd~~t~~~ll~a~~~~g~~~ 406 (857)
T PLN03077 328 SLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYALMEQDN-VSPDEITIASVLSACACLGDLD 406 (857)
T ss_pred HHHHHHHhcCCHHHHHHHHhhCCCCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CCCCceeHHHHHHHHhccchHH
Confidence 999999999999999999999999999999999999999999999999999999999 9999999999999999999999
Q ss_pred HHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHhhCCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHHCCC
Q 007808 313 FSKWVHVYAEYNGYQGNVCVGNALIDMYAKCGIIENAVDVFNSMDTKDLITWNTIISGLAMHGRGAGALSLFHEMKNAGE 392 (589)
Q Consensus 313 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~ 392 (589)
.+.+++..+.+.|+.++..+++.|+++|++.|++++|.++|++|.++|..+|++++.+|++.|+.++|+.+|++|.. ++
T Consensus 407 ~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~ 485 (857)
T PLN03077 407 VGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TL 485 (857)
T ss_pred HHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999986 58
Q ss_pred CCCHhHHHHHHHHHhccCcHHHHHHHHHHhHHhcCC------------------------------CCChHHHHHHHHHH
Q 007808 393 MPDGITFIGILCACTHMGLVEEGLSYFQSMAMDYSI------------------------------VPQIEHYGCMVDLL 442 (589)
Q Consensus 393 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~------------------------------~~~~~~~~~l~~~~ 442 (589)
.||..||+.++.+|++.|+++.+.+++..+.+. |+ .||..+|+.++.+|
T Consensus 486 ~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~-g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~~~d~~s~n~lI~~~ 564 (857)
T PLN03077 486 KPNSVTLIAALSACARIGALMCGKEIHAHVLRT-GIGFDGFLPNALLDLYVRCGRMNYAWNQFNSHEKDVVSWNILLTGY 564 (857)
T ss_pred CCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHh-CCCccceechHHHHHHHHcCCHHHHHHHHHhcCCChhhHHHHHHHH
Confidence 999999998888877777777776666665432 43 46777788888888
Q ss_pred HhcCCHHHHHHHHhhC---CCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHc---cCCCCCcchHHHHHHHhhcCChHH
Q 007808 443 ARAGRLAEAVDFVKRM---PIEADAVIWANLLGSCRVYKNVELAELALERLTE---LEPKNPANFVMLSNIYGDLGRWKD 516 (589)
Q Consensus 443 ~~~g~~~~A~~~~~~~---~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~p~~~~~~~~l~~~~~~~g~~~~ 516 (589)
++.|+.++|+++|++| ++.||..||+.++.+|.+.|++++|.++|+.|.+ +.|+ ..+|.+++++|.+.|++++
T Consensus 565 ~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~-~~~y~~lv~~l~r~G~~~e 643 (857)
T PLN03077 565 VAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPN-LKHYACVVDLLGRAGKLTE 643 (857)
T ss_pred HHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCc-hHHHHHHHHHHHhCCCHHH
Confidence 8888888888888887 4788888888888888888888888888888874 4565 6788888888888888888
Q ss_pred HHHHHHHhhhCCCccCCcc-----------ceeeeCCeeeeeccccCCCchHHHHHHHHHHHHcccCCCCcchHhhh
Q 007808 517 VARIKVAMRDTGFKKLPGC-----------SSIEVNEVVMLGCLSRELDRKSIVRAEANMIKLLPQNNHPLTFIVVI 582 (589)
Q Consensus 517 A~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 582 (589)
|.+++++|. ++|++.. .+++.++.+.+.+++++|++++.+..|+|+|...|+.+++.+.....
T Consensus 644 A~~~~~~m~---~~pd~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M 717 (857)
T PLN03077 644 AYNFINKMP---ITPDPAVWGALLNACRIHRHVELGELAAQHIFELDPNSVGYYILLCNLYADAGKWDEVARVRKTM 717 (857)
T ss_pred HHHHHHHCC---CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHCCChHHHHHHHHHH
Confidence 888888883 6676521 12333444444578999999999999999999999998887776554
No 3
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=4.3e-73 Score=596.29 Aligned_cols=511 Identities=28% Similarity=0.493 Sum_probs=496.0
Q ss_pred CCcccHHHHHHHHHcCCChhHHHHHHHHhhhCC-CCCCcccHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchHHHhHH
Q 007808 63 QNVVSWNAMFNGYAQNEFHRTVVVLFTQMKKLD-AMPNCFTFPIVLKSCVKINALREGEELHCLVLKNGFRANIFVGTAL 141 (589)
Q Consensus 63 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~-~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 141 (589)
++..+|+.+|.++.+.|++++|+++|+.|...+ ..||..+|+.++.+|.+.++++.+.+++..|.+.|+.||..+|+.|
T Consensus 85 ~~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~L 164 (697)
T PLN03081 85 KSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRV 164 (697)
T ss_pred CCceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHH
Confidence 466799999999999999999999999998764 7899999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCChHHHHHHHccCCCCCeehHHHHHHHHHhCCCHHHHHHHHHhCC----CCChhHHHHHHHHHhcCCChHHHH
Q 007808 142 IELYSTGKAIEAAYKVFGEMDERNVVVWTSMINGYISCGDIVSARCLFELAP----ERDVILWNTIVSGYIDVRNMIEAR 217 (589)
Q Consensus 142 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~----~~~~~~~~~l~~~~~~~g~~~~a~ 217 (589)
+.+|++.|++++|.++|++|.+||..+|+.++.+|++.|++++|.++|++|. .||..+|+.++.+|.+.|..+.+.
T Consensus 165 i~~y~k~g~~~~A~~lf~~m~~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~ 244 (697)
T PLN03081 165 LLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQ 244 (697)
T ss_pred HHHHhcCCCHHHHHHHHhcCCCCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHH
Confidence 9999999999999999999999999999999999999999999999999985 468899999999999999999999
Q ss_pred HHhcccCC----CChhhHHHHHHHHHhcCCHHHHHHHHhhCCCCCchhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCC
Q 007808 218 KLFDQMPK----KDVISWNTMLSGYANNGDVEECKRLFEEMPERNVFSWNGLIGGYANNGLFFEVLDAFKRMLTEGRVFP 293 (589)
Q Consensus 218 ~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p 293 (589)
+++..+.+ +|..+|+.++++|++.|++++|.++|+.|.++|+.+||.++.+|++.|++++|+++|++|.+.| +.|
T Consensus 245 ~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g-~~p 323 (697)
T PLN03081 245 QLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSG-VSI 323 (697)
T ss_pred HHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcC-CCC
Confidence 99887764 8999999999999999999999999999999999999999999999999999999999999999 999
Q ss_pred cHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHhhCCCCCcchHHHHHHHHHh
Q 007808 294 NDATIVTVLSACARLGALDFSKWVHVYAEYNGYQGNVCVGNALIDMYAKCGIIENAVDVFNSMDTKDLITWNTIISGLAM 373 (589)
Q Consensus 294 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~ 373 (589)
|..||+.++.+|++.|+++.|.+++..+.+.|++|+..++++|+++|++.|++++|.++|++|.++|..+||+||.+|++
T Consensus 324 d~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~d~~t~n~lI~~y~~ 403 (697)
T PLN03081 324 DQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYGN 403 (697)
T ss_pred CHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCCCCeeeHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHH
Q 007808 374 HGRGAGALSLFHEMKNAGEMPDGITFIGILCACTHMGLVEEGLSYFQSMAMDYSIVPQIEHYGCMVDLLARAGRLAEAVD 453 (589)
Q Consensus 374 ~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 453 (589)
.|+.++|+++|++|.+.|+.||..||+.++.+|.+.|.+++|.++|+.|.+++++.|+..+|+.++++|++.|++++|.+
T Consensus 404 ~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~ 483 (697)
T PLN03081 404 HGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYA 483 (697)
T ss_pred cCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHH
Confidence 99999999999999999999999999999999999999999999999998888999999999999999999999999999
Q ss_pred HHhhCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHccCCCCCcchHHHHHHHhhcCChHHHHHHHHHhhhCCCccCC
Q 007808 454 FVKRMPIEADAVIWANLLGSCRVYKNVELAELALERLTELEPKNPANFVMLSNIYGDLGRWKDVARIKVAMRDTGFKKLP 533 (589)
Q Consensus 454 ~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 533 (589)
++++|+..|+..+|++++.+|...|+++.|..++++++++.|++...|..|+++|.+.|+|++|.+++++|.+.|+++.|
T Consensus 484 ~~~~~~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g~~k~~ 563 (697)
T PLN03081 484 MIRRAPFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGLSMHP 563 (697)
T ss_pred HHHHCCCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHcCCccCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccceeeeCCeeeee--ccccCCCchHHHHHHHHHHHHcccCCC
Q 007808 534 GCSSIEVNEVVMLG--CLSRELDRKSIVRAEANMIKLLPQNNH 574 (589)
Q Consensus 534 ~~~~~~~~~~~~~~--~~~~~p~~~~~~~~l~~~~~~~~~~~~ 574 (589)
|++|++.+...+.+ ....||....++..|..+..++.+.+.
T Consensus 564 g~s~i~~~~~~~~f~~~d~~h~~~~~i~~~l~~l~~~~~~~gy 606 (697)
T PLN03081 564 ACTWIEVKKQDHSFFSGDRLHPQSREIYQKLDELMKEISEYGY 606 (697)
T ss_pred CeeEEEECCeEEEEccCCCCCccHHHHHHHHHHHHHHHHHcCC
Confidence 99999999999998 778899999999999999998887665
No 4
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=1.5e-63 Score=525.50 Aligned_cols=500 Identities=17% Similarity=0.251 Sum_probs=454.5
Q ss_pred HhCCCCCccchHHHHHHHHccCChhHHHHHhhcCCCCCcc-----cHHHHHHHHHcCCChhHHHHHHHHhhhCCCCCCcc
Q 007808 27 TSGLEKSDYITPRIITACAQLKQMTYARKMFDKITDQNVV-----SWNAMFNGYAQNEFHRTVVVLFTQMKKLDAMPNCF 101 (589)
Q Consensus 27 ~~g~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-----~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~ 101 (589)
.....++...|..++..+.+.|++++|+++|++|++++.. .++.++..|.+.|.+++|.++|+.|.. ||..
T Consensus 363 ~~~~~~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~----pd~~ 438 (1060)
T PLN03218 363 GVSGKRKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN----PTLS 438 (1060)
T ss_pred ccCCCCCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC----CCHH
Confidence 3445677888999999999999999999999999875544 556677789999999999999999974 8999
Q ss_pred cHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchHHHhHHHHHHHcCCChHHHHHHHccCC----CCCeehHHHHHHHHH
Q 007808 102 TFPIVLKSCVKINALREGEELHCLVLKNGFRANIFVGTALIELYSTGKAIEAAYKVFGEMD----ERNVVVWTSMINGYI 177 (589)
Q Consensus 102 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~l~~~~~ 177 (589)
+|+.++.+|++.|+++.|.++|++|.+.|+.||..+|+.||.+|++.|++++|.++|++|. .||..+|+.+|.+|+
T Consensus 439 Tyn~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~ 518 (1060)
T PLN03218 439 TFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCA 518 (1060)
T ss_pred HHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999998 479999999999999
Q ss_pred hCCCHHHHHHHHHhCC----CCChhHHHHHHHHHhcCCChHHHHHHhcccC------CCChhhHHHHHHHHHhcCCHHHH
Q 007808 178 SCGDIVSARCLFELAP----ERDVILWNTIVSGYIDVRNMIEARKLFDQMP------KKDVISWNTMLSGYANNGDVEEC 247 (589)
Q Consensus 178 ~~g~~~~a~~~~~~~~----~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~------~~~~~~~~~l~~~~~~~~~~~~A 247 (589)
+.|++++|.++|+.|. .||..+|+.++.+|++.|++++|.++|++|. .||..+|++++.+|++.|++++|
T Consensus 519 k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA 598 (1060)
T PLN03218 519 RAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRA 598 (1060)
T ss_pred HCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHH
Confidence 9999999999999885 4799999999999999999999999999994 38999999999999999999999
Q ss_pred HHHHhhCCC----CCchhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 007808 248 KRLFEEMPE----RNVFSWNGLIGGYANNGLFFEVLDAFKRMLTEGRVFPNDATIVTVLSACARLGALDFSKWVHVYAEY 323 (589)
Q Consensus 248 ~~~~~~~~~----~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 323 (589)
.++|+.|.+ |+..+|+.+|.+|++.|++++|.++|++|.+.| +.||..+|+.++.+|++.|++++|.+++..|.+
T Consensus 599 ~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~G-v~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k 677 (1060)
T PLN03218 599 KEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKG-VKPDEVFFSALVDVAGHAGDLDKAFEILQDARK 677 (1060)
T ss_pred HHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 999999986 677999999999999999999999999999999 999999999999999999999999999999999
Q ss_pred cCCCCChhHHHHHHHHHHhcCChHHHHHHHhhCC----CCCcchHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHhHH
Q 007808 324 NGYQGNVCVGNALIDMYAKCGIIENAVDVFNSMD----TKDLITWNTIISGLAMHGRGAGALSLFHEMKNAGEMPDGITF 399 (589)
Q Consensus 324 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~ 399 (589)
.|++|+..+|+.++.+|++.|++++|.++|++|. .||..+|+.||.+|++.|++++|+++|++|...|+.||..||
T Consensus 678 ~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty 757 (1060)
T PLN03218 678 QGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITY 757 (1060)
T ss_pred cCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHH
Confidence 9999999999999999999999999999999995 689999999999999999999999999999999999999999
Q ss_pred HHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHh----c-------------------CCHHHHHHHHh
Q 007808 400 IGILCACTHMGLVEEGLSYFQSMAMDYSIVPQIEHYGCMVDLLAR----A-------------------GRLAEAVDFVK 456 (589)
Q Consensus 400 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~-------------------g~~~~A~~~~~ 456 (589)
+.++.+|++.|++++|.+++++|.+ .|+.||..+|+.++..+.+ + +..++|..+|+
T Consensus 758 ~sLL~a~~k~G~le~A~~l~~~M~k-~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~ 836 (1060)
T PLN03218 758 SILLVASERKDDADVGLDLLSQAKE-DGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYR 836 (1060)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHH-cCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHHH
Confidence 9999999999999999999999965 4999999999999876432 2 22467999999
Q ss_pred hC---CCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHc-cCCCCCcchHHHHHHHhhcCChHHHHHHHHHhhhCCCccC
Q 007808 457 RM---PIEADAVIWANLLGSCRVYKNVELAELALERLTE-LEPKNPANFVMLSNIYGDLGRWKDVARIKVAMRDTGFKKL 532 (589)
Q Consensus 457 ~~---~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 532 (589)
+| ++.||..+|+.++.++...+....+..+++.+.. -.+.+..+|..|++.+.+. .++|..++++|.+.|+.|+
T Consensus 837 eM~~~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~~~~~~~~y~~Li~g~~~~--~~~A~~l~~em~~~Gi~p~ 914 (1060)
T PLN03218 837 ETISAGTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGISADSQKQSNLSTLVDGFGEY--DPRAFSLLEEAASLGVVPS 914 (1060)
T ss_pred HHHHCCCCCCHHHHHHHHHHhcccccHHHHHHHHHHhccCCCCcchhhhHHHHHhhccC--hHHHHHHHHHHHHcCCCCC
Confidence 99 6899999999999888889999999888887653 3344578999999987432 3689999999999999998
Q ss_pred Cc
Q 007808 533 PG 534 (589)
Q Consensus 533 ~~ 534 (589)
..
T Consensus 915 ~~ 916 (1060)
T PLN03218 915 VS 916 (1060)
T ss_pred cc
Confidence 75
No 5
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=7.4e-59 Score=490.03 Aligned_cols=478 Identities=14% Similarity=0.206 Sum_probs=436.5
Q ss_pred ChhHHHHHhhcCCC--CCcccHHHHHHHHHcCCChhHHHHHHHHhhhCCC-CCCcccHHHHHHHHhccCChHHHHHHHHH
Q 007808 49 QMTYARKMFDKITD--QNVVSWNAMFNGYAQNEFHRTVVVLFTQMKKLDA-MPNCFTFPIVLKSCVKINALREGEELHCL 125 (589)
Q Consensus 49 ~~~~A~~~~~~~~~--~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~-~p~~~~~~~ll~~~~~~~~~~~a~~~~~~ 125 (589)
+...+....+.... ++...|..++..+++.|++++|+++|++|.+.|+ .|+..+++.++..|.+.|..++|..+++.
T Consensus 352 ~~~~~~~~~~~~~~~~~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~ 431 (1060)
T PLN03218 352 EEENSLAAYNGGVSGKRKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKL 431 (1060)
T ss_pred hhhhhHHHhccccCCCCCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 34444445555443 6788899999999999999999999999999985 56777888999999999999999999998
Q ss_pred HHHhCCCCchHHHhHHHHHHHcCCChHHHHHHHccCCC----CCeehHHHHHHHHHhCCCHHHHHHHHHhCC----CCCh
Q 007808 126 VLKNGFRANIFVGTALIELYSTGKAIEAAYKVFGEMDE----RNVVVWTSMINGYISCGDIVSARCLFELAP----ERDV 197 (589)
Q Consensus 126 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~----~~~~ 197 (589)
|. .||..+|+.++.+|++.|+++.|.++|++|.+ ||..+|+.+|.+|++.|++++|.++|++|. .||.
T Consensus 432 M~----~pd~~Tyn~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~Pdv 507 (1060)
T PLN03218 432 IR----NPTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANV 507 (1060)
T ss_pred cC----CCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCH
Confidence 85 39999999999999999999999999999975 789999999999999999999999999997 5799
Q ss_pred hHHHHHHHHHhcCCChHHHHHHhcccCC----CChhhHHHHHHHHHhcCCHHHHHHHHhhCC------CCCchhHHHHHH
Q 007808 198 ILWNTIVSGYIDVRNMIEARKLFDQMPK----KDVISWNTMLSGYANNGDVEECKRLFEEMP------ERNVFSWNGLIG 267 (589)
Q Consensus 198 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~------~~~~~~~~~l~~ 267 (589)
.+|+.++.+|++.|++++|.++|++|.+ ||..+|+.++.+|++.|++++|.++|++|. .||..+|+.++.
T Consensus 508 vTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ 587 (1060)
T PLN03218 508 HTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMK 587 (1060)
T ss_pred HHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHH
Confidence 9999999999999999999999999964 999999999999999999999999999995 389999999999
Q ss_pred HHHhCCChHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChH
Q 007808 268 GYANNGLFFEVLDAFKRMLTEGRVFPNDATIVTVLSACARLGALDFSKWVHVYAEYNGYQGNVCVGNALIDMYAKCGIIE 347 (589)
Q Consensus 268 ~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 347 (589)
+|++.|++++|.++|++|.+.| +.|+..+|+.++.+|++.|++++|..+|++|.+.|+.|+..+|+.++.+|++.|+++
T Consensus 588 ay~k~G~ldeA~elf~~M~e~g-i~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~e 666 (1060)
T PLN03218 588 ACANAGQVDRAKEVYQMIHEYN-IKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLD 666 (1060)
T ss_pred HHHHCCCHHHHHHHHHHHHHcC-CCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHH
Confidence 9999999999999999999999 999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhCC----CCCcchHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCcHHHHHHHHHHhH
Q 007808 348 NAVDVFNSMD----TKDLITWNTIISGLAMHGRGAGALSLFHEMKNAGEMPDGITFIGILCACTHMGLVEEGLSYFQSMA 423 (589)
Q Consensus 348 ~A~~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 423 (589)
+|.++|+.|. .||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.++|++|.
T Consensus 667 eA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~ 746 (1060)
T PLN03218 667 KAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMK 746 (1060)
T ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 9999999997 478899999999999999999999999999999999999999999999999999999999999995
Q ss_pred HhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHhhC---CCCCCHHHHHHHHHHHhc-----------------------C
Q 007808 424 MDYSIVPQIEHYGCMVDLLARAGRLAEAVDFVKRM---PIEADAVIWANLLGSCRV-----------------------Y 477 (589)
Q Consensus 424 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~---~~~p~~~~~~~l~~~~~~-----------------------~ 477 (589)
. .|+.||..+|+.++.+|++.|++++|.+++++| ++.||..+|++++..|.+ .
T Consensus 747 ~-~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n 825 (1060)
T PLN03218 747 R-LGLCPNTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIEN 825 (1060)
T ss_pred H-cCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhcccccccc
Confidence 4 499999999999999999999999999999998 589999999999866432 1
Q ss_pred CCHHHHHHHHHHHHc--cCCCCCcchHHHHHHHhhcCChHHHHHHHHHhhhCCCccCC
Q 007808 478 KNVELAELALERLTE--LEPKNPANFVMLSNIYGDLGRWKDVARIKVAMRDTGFKKLP 533 (589)
Q Consensus 478 g~~~~A~~~~~~~~~--~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 533 (589)
+..+.|..+|++|++ +.|+ ..+|..++.++++.+..+.+..+++.|...+..++.
T Consensus 826 ~w~~~Al~lf~eM~~~Gi~Pd-~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~~~~~~ 882 (1060)
T PLN03218 826 KWTSWALMVYRETISAGTLPT-MEVLSQVLGCLQLPHDATLRNRLIENLGISADSQKQ 882 (1060)
T ss_pred chHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHhcccccHHHHHHHHHHhccCCCCcch
Confidence 234678889999988 4465 778888888888889999999998888766655543
No 6
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=8.1e-59 Score=488.24 Aligned_cols=423 Identities=24% Similarity=0.418 Sum_probs=404.1
Q ss_pred cHHHHHHhccCCchH---HHHHHHHHHhCCCCCccchHHHHHHHHccCChhHHHHHhhcCCCCCcccHHHHHHHHHcCCC
Q 007808 4 TTGAHSEQLETTKHL---HQIQTQVVTSGLEKSDYITPRIITACAQLKQMTYARKMFDKITDQNVVSWNAMFNGYAQNEF 80 (589)
Q Consensus 4 ~~~~~~~~~~~~~~~---~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~ 80 (589)
++.+++.+|+..+.+ .++|..|.+.|+.||..+|+.++.+|++.|+++.|.++|++|++||..+||.++.+|++.|+
T Consensus 125 t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~~~~~t~n~li~~~~~~g~ 204 (697)
T PLN03081 125 TYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGN 204 (697)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHhcCCCHHHHHHHHhcCCCCCeeeHHHHHHHHHHCcC
Confidence 577888888776654 89999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHhhhCCCCCCcccHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchHHHhHHHHHHHcCCChHHHHHHHcc
Q 007808 81 HRTVVVLFTQMKKLDAMPNCFTFPIVLKSCVKINALREGEELHCLVLKNGFRANIFVGTALIELYSTGKAIEAAYKVFGE 160 (589)
Q Consensus 81 ~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 160 (589)
+++|+++|++|.+.|+.|+..||+.++.+|+..|..+.+.+++..+.+.|+.||..+|++|+++|++.|++++|.++|++
T Consensus 205 ~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~ 284 (697)
T PLN03081 205 YREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDG 284 (697)
T ss_pred HHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCeehHHHHHHHHHhCCCHHHHHHHHHhCC----CCChhHHHHHHHHHhcCCChHHHHHHhcccCC----CChhhHH
Q 007808 161 MDERNVVVWTSMINGYISCGDIVSARCLFELAP----ERDVILWNTIVSGYIDVRNMIEARKLFDQMPK----KDVISWN 232 (589)
Q Consensus 161 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~----~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~----~~~~~~~ 232 (589)
|.++|.++|+.++.+|++.|++++|.++|++|. .||..||+.++.+|++.|++++|.+++..|.+ +|..+|+
T Consensus 285 m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~ 364 (697)
T PLN03081 285 MPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANT 364 (697)
T ss_pred CCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehH
Confidence 999999999999999999999999999999984 67999999999999999999999999999874 8999999
Q ss_pred HHHHHHHhcCCHHHHHHHHhhCCCCCchhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHhcCChh
Q 007808 233 TMLSGYANNGDVEECKRLFEEMPERNVFSWNGLIGGYANNGLFFEVLDAFKRMLTEGRVFPNDATIVTVLSACARLGALD 312 (589)
Q Consensus 233 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~ 312 (589)
+++++|++.|++++|.++|++|.++|+.+||.||.+|++.|+.++|+++|++|.+.| +.||..||+.++.+|++.|+.+
T Consensus 365 ~Li~~y~k~G~~~~A~~vf~~m~~~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g-~~Pd~~T~~~ll~a~~~~g~~~ 443 (697)
T PLN03081 365 ALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYGNHGRGTKAVEMFERMIAEG-VAPNHVTFLAVLSACRYSGLSE 443 (697)
T ss_pred HHHHHHHHCCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCCHHHHHHHHHHHhcCCcHH
Confidence 999999999999999999999999999999999999999999999999999999999 9999999999999999999999
Q ss_pred HHHHHHHHHHH-cCCCCChhHHHHHHHHHHhcCChHHHHHHHhhCC-CCCcchHHHHHHHHHhCCChHHHHHHHHHHHHC
Q 007808 313 FSKWVHVYAEY-NGYQGNVCVGNALIDMYAKCGIIENAVDVFNSMD-TKDLITWNTIISGLAMHGRGAGALSLFHEMKNA 390 (589)
Q Consensus 313 ~a~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~ 390 (589)
+|.++|+.|.+ .|+.|+..+|+.++++|++.|++++|.++++++. .|+..+|++|+.+|...|+.+.|..+++++.+
T Consensus 444 ~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~- 522 (697)
T PLN03081 444 QGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRAPFKPTVNMWAALLTACRIHKNLELGRLAAEKLYG- 522 (697)
T ss_pred HHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhC-
Confidence 99999999986 6999999999999999999999999999999997 68999999999999999999999999999975
Q ss_pred CCCC-CHhHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCC
Q 007808 391 GEMP-DGITFIGILCACTHMGLVEEGLSYFQSMAMDYSIVP 430 (589)
Q Consensus 391 ~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 430 (589)
+.| +..+|..++..|++.|++++|.++++.|.+. |+..
T Consensus 523 -~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~-g~~k 561 (697)
T PLN03081 523 -MGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRK-GLSM 561 (697)
T ss_pred -CCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHc-CCcc
Confidence 556 4679999999999999999999999999654 6643
No 7
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=6.1e-36 Score=330.52 Aligned_cols=536 Identities=13% Similarity=0.060 Sum_probs=272.4
Q ss_pred ccCCchHHHHHHHHHHhCCCCCccchHHHHHHHHccCChhHHHHHhhcCCC---CCcccHHHHHHHHHcCCChhHHHHHH
Q 007808 12 LETTKHLHQIQTQVVTSGLEKSDYITPRIITACAQLKQMTYARKMFDKITD---QNVVSWNAMFNGYAQNEFHRTVVVLF 88 (589)
Q Consensus 12 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~ll~~~~~~~~~~~a~~~~ 88 (589)
.+........+..+.+.. +.+...+..+...+.+.|++++|...++.+.. .+...+..+...+.+.|++++|.+.|
T Consensus 308 ~g~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 386 (899)
T TIGR02917 308 LGNLEQAYQYLNQILKYA-PNSHQARRLLASIQLRLGRVDEAIATLSPALGLDPDDPAALSLLGEAYLALGDFEKAAEYL 386 (899)
T ss_pred cCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 344444445555544432 23334445555555556666666665555443 23334555555555556666666666
Q ss_pred HHhhhCCCCCCcccHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchHHHhHHHHHHHcCCChHHHHHHHccCCC---CC
Q 007808 89 TQMKKLDAMPNCFTFPIVLKSCVKINALREGEELHCLVLKNGFRANIFVGTALIELYSTGKAIEAAYKVFGEMDE---RN 165 (589)
Q Consensus 89 ~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~ 165 (589)
+++.+.. +.+...+..+...+...|++++|.+.++.+.+.+.. .......++..+.+.|++++|..+++.+.. .+
T Consensus 387 ~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~ 464 (899)
T TIGR02917 387 AKATELD-PENAAARTQLGISKLSQGDPSEAIADLETAAQLDPE-LGRADLLLILSYLRSGQFDKALAAAKKLEKKQPDN 464 (899)
T ss_pred HHHHhcC-CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCCc-chhhHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC
Confidence 5555432 223334444444555555555555555555544321 122333344444455555555555544432 23
Q ss_pred eehHHHHHHHHHhCCCHHHHHHHHHhCCC---CChhHHHHHHHHHhcCCChHHHHHHhcccCC---CChhhHHH------
Q 007808 166 VVVWTSMINGYISCGDIVSARCLFELAPE---RDVILWNTIVSGYIDVRNMIEARKLFDQMPK---KDVISWNT------ 233 (589)
Q Consensus 166 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~------ 233 (589)
..+|..+...+...|++++|...|+++.+ .+...+..++..+...|++++|.+.++++.+ .+..++..
T Consensus 465 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 544 (899)
T TIGR02917 465 ASLHNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDPKNLRAILALAGLYL 544 (899)
T ss_pred cHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHH
Confidence 33444445555555555555555544322 1233344444444444444444444444432 22334444
Q ss_pred ----------------------------HHHHHHhcCCHHHHHHHHhhCCC---CCchhHHHHHHHHHhCCChHHHHHHH
Q 007808 234 ----------------------------MLSGYANNGDVEECKRLFEEMPE---RNVFSWNGLIGGYANNGLFFEVLDAF 282 (589)
Q Consensus 234 ----------------------------l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~ 282 (589)
++..+.+.|++++|..+++.+.+ .+...|..+..++...|++++|+..|
T Consensus 545 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 624 (899)
T TIGR02917 545 RTGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSF 624 (899)
T ss_pred HcCCHHHHHHHHHHHHHhCccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 44444455555555555544432 23344444555555555555555555
Q ss_pred HHHHHcCCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHhhCCC---C
Q 007808 283 KRMLTEGRVFPNDATIVTVLSACARLGALDFSKWVHVYAEYNGYQGNVCVGNALIDMYAKCGIIENAVDVFNSMDT---K 359 (589)
Q Consensus 283 ~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~ 359 (589)
+++.+.. +.+...+..+..++.+.|++++|..++..+.+.. +.+...+..++..+...|++++|.++++.+.+ .
T Consensus 625 ~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~ 701 (899)
T TIGR02917 625 KKLLALQ--PDSALALLLLADAYAVMKNYAKAITSLKRALELK-PDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHPK 701 (899)
T ss_pred HHHHHhC--CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcC
Confidence 5554432 2233344444444555555555555555544432 33344444555555555555555555554432 1
Q ss_pred CcchHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHH
Q 007808 360 DLITWNTIISGLAMHGRGAGALSLFHEMKNAGEMPDGITFIGILCACTHMGLVEEGLSYFQSMAMDYSIVPQIEHYGCMV 439 (589)
Q Consensus 360 ~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~ 439 (589)
+...+..+...+...|++++|+..|+++... .|+..++..++.++.+.|++++|.+.++++.. ..+.+...+..++
T Consensus 702 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~--~~~~~~~~~~~la 777 (899)
T TIGR02917 702 AALGFELEGDLYLRQKDYPAAIQAYRKALKR--APSSQNAIKLHRALLASGNTAEAVKTLEAWLK--THPNDAVLRTALA 777 (899)
T ss_pred ChHHHHHHHHHHHHCCCHHHHHHHHHHHHhh--CCCchHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHH
Confidence 3334444555555555555555555555543 23334444455555555555555555555543 2223344555555
Q ss_pred HHHHhcCCHHHHHHHHhhC-C-CCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHccCCCCCcchHHHHHHHhhcCChHHH
Q 007808 440 DLLARAGRLAEAVDFVKRM-P-IEADAVIWANLLGSCRVYKNVELAELALERLTELEPKNPANFVMLSNIYGDLGRWKDV 517 (589)
Q Consensus 440 ~~~~~~g~~~~A~~~~~~~-~-~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A 517 (589)
..|...|++++|.+.|+++ . .+++...++.+...+...|+ .+|+..+++++++.|+++..+..++.++...|++++|
T Consensus 778 ~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A 856 (899)
T TIGR02917 778 ELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLELKD-PRALEYAEKALKLAPNIPAILDTLGWLLVEKGEADRA 856 (899)
T ss_pred HHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHH
Confidence 5555555555555555554 1 22234445555555555555 4455555555555555555555555555555555555
Q ss_pred HHHHHHhhhCCCccCCccceeeeCCeeeeeccccCCCchHHHHHHHHHHHHcccCCCCcchHhhh
Q 007808 518 ARIKVAMRDTGFKKLPGCSSIEVNEVVMLGCLSRELDRKSIVRAEANMIKLLPQNNHPLTFIVVI 582 (589)
Q Consensus 518 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 582 (589)
.++++++ ++.+|+++.++..+++++.+.|+..+|+..+..+
T Consensus 857 ~~~~~~a------------------------~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 897 (899)
T TIGR02917 857 LPLLRKA------------------------VNIAPEAAAIRYHLALALLATGRKAEARKELDKL 897 (899)
T ss_pred HHHHHHH------------------------HhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 5555555 4888999999999999999999999998877644
No 8
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=9.7e-35 Score=320.94 Aligned_cols=563 Identities=11% Similarity=0.028 Sum_probs=471.4
Q ss_pred ccCCchHHHHHHHHHHhCCCCCccchHHHHHHHHccCChhHHHHHhhcCCC---CCcccHHHHHHHHHcCCChhHHHHHH
Q 007808 12 LETTKHLHQIQTQVVTSGLEKSDYITPRIITACAQLKQMTYARKMFDKITD---QNVVSWNAMFNGYAQNEFHRTVVVLF 88 (589)
Q Consensus 12 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~ll~~~~~~~~~~~a~~~~ 88 (589)
.+........+....+.+ +.+...+..+...+.+.|++++|...|+...+ .+...+..+...+.+.|++++|...+
T Consensus 274 ~~~~~~A~~~~~~~l~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~ 352 (899)
T TIGR02917 274 KKNYEDARETLQDALKSA-PEYLPALLLAGASEYQLGNLEQAYQYLNQILKYAPNSHQARRLLASIQLRLGRVDEAIATL 352 (899)
T ss_pred hcCHHHHHHHHHHHHHhC-CCchhHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHCCCHHHHHHHH
Confidence 455566677777777655 22234455667788899999999999998764 34456778888999999999999999
Q ss_pred HHhhhCCCCCCcccHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchHHHhHHHHHHHcCCChHHHHHHHccCCCC---C
Q 007808 89 TQMKKLDAMPNCFTFPIVLKSCVKINALREGEELHCLVLKNGFRANIFVGTALIELYSTGKAIEAAYKVFGEMDER---N 165 (589)
Q Consensus 89 ~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~ 165 (589)
+.+.+.. +.+...+..+...+...|++++|.+.|+++.+.. +.+...+..+...+...|++++|.+.++.+.+. .
T Consensus 353 ~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~ 430 (899)
T TIGR02917 353 SPALGLD-PDDPAALSLLGEAYLALGDFEKAAEYLAKATELD-PENAAARTQLGISKLSQGDPSEAIADLETAAQLDPEL 430 (899)
T ss_pred HHHHhcC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCCcc
Confidence 9998764 4567788889999999999999999999998865 346677888899999999999999999988652 3
Q ss_pred eehHHHHHHHHHhCCCHHHHHHHHHhCCC---CChhHHHHHHHHHhcCCChHHHHHHhcccCC---CChhhHHHHHHHHH
Q 007808 166 VVVWTSMINGYISCGDIVSARCLFELAPE---RDVILWNTIVSGYIDVRNMIEARKLFDQMPK---KDVISWNTMLSGYA 239 (589)
Q Consensus 166 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~ 239 (589)
...+..++..+.+.|++++|..+++.+.. .+..++..+...+...|++++|.+.|+++.+ .+...+..+...+.
T Consensus 431 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~ 510 (899)
T TIGR02917 431 GRADLLLILSYLRSGQFDKALAAAKKLEKKQPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPAAANLARIDI 510 (899)
T ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHH
Confidence 45677788999999999999999988764 3677899999999999999999999998865 45567788889999
Q ss_pred hcCCHHHHHHHHhhCCC---CCchhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHhcCChhHHHH
Q 007808 240 NNGDVEECKRLFEEMPE---RNVFSWNGLIGGYANNGLFFEVLDAFKRMLTEGRVFPNDATIVTVLSACARLGALDFSKW 316 (589)
Q Consensus 240 ~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~ 316 (589)
..|++++|.+.|+.+.+ .+..++..+...+...|+.++|...++++...+ +.+...+..+...+...|++++|..
T Consensus 511 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~ 588 (899)
T TIGR02917 511 QEGNPDDAIQRFEKVLTIDPKNLRAILALAGLYLRTGNEEEAVAWLEKAAELN--PQEIEPALALAQYYLGKGQLKKALA 588 (899)
T ss_pred HCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--ccchhHHHHHHHHHHHCCCHHHHHH
Confidence 99999999999999875 356788889999999999999999999998875 4566778889999999999999999
Q ss_pred HHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHhhCCC---CCcchHHHHHHHHHhCCChHHHHHHHHHHHHCCCC
Q 007808 317 VHVYAEYNGYQGNVCVGNALIDMYAKCGIIENAVDVFNSMDT---KDLITWNTIISGLAMHGRGAGALSLFHEMKNAGEM 393 (589)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~ 393 (589)
+++.+.+.. +.+...+..++.++...|++++|...|+.+.+ .++..+..+..++...|++++|..+++++.+.. +
T Consensus 589 ~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~ 666 (899)
T TIGR02917 589 ILNEAADAA-PDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRALELK-P 666 (899)
T ss_pred HHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-C
Confidence 999998764 66788999999999999999999999998763 366788899999999999999999999999852 3
Q ss_pred CCHhHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHhhC-CCCCCHHHHHHHHH
Q 007808 394 PDGITFIGILCACTHMGLVEEGLSYFQSMAMDYSIVPQIEHYGCMVDLLARAGRLAEAVDFVKRM-PIEADAVIWANLLG 472 (589)
Q Consensus 394 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~ 472 (589)
.+..++..++..+...|++++|.++++.+... .+++...+..++..+.+.|++++|++.++++ ...|+..++..+..
T Consensus 667 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~ 744 (899)
T TIGR02917 667 DNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQ--HPKAALGFELEGDLYLRQKDYPAAIQAYRKALKRAPSSQNAIKLHR 744 (899)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CcCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCchHHHHHHH
Confidence 45778899999999999999999999999753 3456778888999999999999999999988 45677778888889
Q ss_pred HHhcCCCHHHHHHHHHHHHccCCCCCcchHHHHHHHhhcCChHHHHHHHHHhhhCCCccCC------ccceeeeCCe---
Q 007808 473 SCRVYKNVELAELALERLTELEPKNPANFVMLSNIYGDLGRWKDVARIKVAMRDTGFKKLP------GCSSIEVNEV--- 543 (589)
Q Consensus 473 ~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~------~~~~~~~~~~--- 543 (589)
++.+.|++++|.+.++++++..|+++..+..++.+|...|++++|++.++++.+.... ++ +......+..
T Consensus 745 ~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~~~~~A~ 823 (899)
T TIGR02917 745 ALLASGNTAEAVKTLEAWLKTHPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPD-NAVVLNNLAWLYLELKDPRAL 823 (899)
T ss_pred HHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhcCcHHHH
Confidence 9999999999999999999999999999999999999999999999999999755422 21 1111222221
Q ss_pred -eeeeccccCCCchHHHHHHHHHHHHcccCCCCcchHhhhhh
Q 007808 544 -VMLGCLSRELDRKSIVRAEANMIKLLPQNNHPLTFIVVIFS 584 (589)
Q Consensus 544 -~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 584 (589)
....++++.|+++.++..++.+|...|+.++|+.++.....
T Consensus 824 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~ 865 (899)
T TIGR02917 824 EYAEKALKLAPNIPAILDTLGWLLVEKGEADRALPLLRKAVN 865 (899)
T ss_pred HHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 11117788999999999999999999999999888765543
No 9
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.97 E-value=4.6e-27 Score=259.85 Aligned_cols=485 Identities=11% Similarity=0.042 Sum_probs=272.8
Q ss_pred CCCccchHHHHHHHHccCChhHHHHHhhcCCC--CCcccH-----------------HHHHHHHHcCCChhHHHHHHHHh
Q 007808 31 EKSDYITPRIITACAQLKQMTYARKMFDKITD--QNVVSW-----------------NAMFNGYAQNEFHRTVVVLFTQM 91 (589)
Q Consensus 31 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~-----------------~~ll~~~~~~~~~~~a~~~~~~m 91 (589)
+.++.++..++..+.+.|+.++|.+.+++..+ |+...+ ......+...|++++|++.|+.+
T Consensus 59 p~~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~P~~~~~~~~~~~~~~~~~~~~~~l~~A~ll~~~g~~~eA~~~~~~~ 138 (1157)
T PRK11447 59 PNNPDVIAARFRLLLRQGDSDGAQKLLDRLSQLAPDSNAYRSSRTTMLLSTPEGRQALQQARLLATTGRTEEALASYDKL 138 (1157)
T ss_pred CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHhcCCchhhHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 44667778888888899999999999988865 433222 22334677889999999999998
Q ss_pred hhCCCCCCccc-HHHHHHHHhccCChHHHHHHHHHHHHhCCCCchHHHhHHHHHHHcCCChHHHHHHHccCCCCCee---
Q 007808 92 KKLDAMPNCFT-FPIVLKSCVKINALREGEELHCLVLKNGFRANIFVGTALIELYSTGKAIEAAYKVFGEMDERNVV--- 167 (589)
Q Consensus 92 ~~~~~~p~~~~-~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~--- 167 (589)
.+.+ +|+... ...........|+.++|.+.++++.+.. +.+...+..+...+...|+.++|++.++++.+....
T Consensus 139 l~~~-p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~-P~~~~~~~~LA~ll~~~g~~~eAl~~l~~~~~~~~~~~~ 216 (1157)
T PRK11447 139 FNGA-PPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADY-PGNTGLRNTLALLLFSSGRRDEGFAVLEQMAKSPAGRDA 216 (1157)
T ss_pred ccCC-CCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCchHH
Confidence 7653 333221 1111122234588899999999998875 446677788888888899999999988876431100
Q ss_pred ---hH-----------------H----------------------------------HHHHHHHhCCCHHHHHHHHHhCC
Q 007808 168 ---VW-----------------T----------------------------------SMINGYISCGDIVSARCLFELAP 193 (589)
Q Consensus 168 ---~~-----------------~----------------------------------~l~~~~~~~g~~~~a~~~~~~~~ 193 (589)
.| . .....+...|++++|...|++..
T Consensus 217 aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~~~~~G~~~~~~g~~~~A~~~l~~aL 296 (1157)
T PRK11447 217 AAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAFRARAQGLAAVDSGQGGKAIPELQQAV 296 (1157)
T ss_pred HHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 00 0 01122333444444444444433
Q ss_pred C--C-ChhHHHHHHHHHhcCCChHHHHHHhcccCC--CChh---hH------------HHHHHHHHhcCCHHHHHHHHhh
Q 007808 194 E--R-DVILWNTIVSGYIDVRNMIEARKLFDQMPK--KDVI---SW------------NTMLSGYANNGDVEECKRLFEE 253 (589)
Q Consensus 194 ~--~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~~---~~------------~~l~~~~~~~~~~~~A~~~~~~ 253 (589)
+ | +...+..+..++.+.|++++|+..|++..+ |+.. .+ ......+.+.|++++|...|++
T Consensus 297 ~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~ 376 (1157)
T PRK11447 297 RANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQ 376 (1157)
T ss_pred HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 2 1 334444444444444444444444444432 1110 01 0112233344444444444444
Q ss_pred CCC---CCchhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCC---
Q 007808 254 MPE---RNVFSWNGLIGGYANNGLFFEVLDAFKRMLTEGRVFPNDATIVTVLSACARLGALDFSKWVHVYAEYNGYQ--- 327 (589)
Q Consensus 254 ~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--- 327 (589)
+.+ .+...+..+...+...|++++|++.|+++++.. +.+...+..+...+. .++.++|..+++.+......
T Consensus 377 Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~--p~~~~a~~~L~~l~~-~~~~~~A~~~l~~l~~~~~~~~~ 453 (1157)
T PRK11447 377 ARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMD--PGNTNAVRGLANLYR-QQSPEKALAFIASLSASQRRSID 453 (1157)
T ss_pred HHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHH-hcCHHHHHHHHHhCCHHHHHHHH
Confidence 443 122333344444444444444444444444432 112222333333332 23344444444332111000
Q ss_pred -----CChhHHHHHHHHHHhcCChHHHHHHHhhCCC--C-CcchHHHHHHHHHhCCChHHHHHHHHHHHHCCCCC-CHhH
Q 007808 328 -----GNVCVGNALIDMYAKCGIIENAVDVFNSMDT--K-DLITWNTIISGLAMHGRGAGALSLFHEMKNAGEMP-DGIT 398 (589)
Q Consensus 328 -----~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p-~~~~ 398 (589)
.....+..+...+...|++++|++.|++..+ | ++..+..+...|.+.|++++|...++++.+. .| +...
T Consensus 454 ~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~--~P~~~~~ 531 (1157)
T PRK11447 454 DIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQ--KPNDPEQ 531 (1157)
T ss_pred HHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCHHH
Confidence 0011222334445555666666666665542 2 3344555556666666666666666665552 23 2333
Q ss_pred HHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCCh---------HHHHHHHHHHHhcCCHHHHHHHHhhCCCCCCHHHHHH
Q 007808 399 FIGILCACTHMGLVEEGLSYFQSMAMDYSIVPQI---------EHYGCMVDLLARAGRLAEAVDFVKRMPIEADAVIWAN 469 (589)
Q Consensus 399 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~---------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ 469 (589)
+..+...+...+++++|...++.+... ...++. ..+..+...+...|+.++|+++++.-+ ++...+..
T Consensus 532 ~~a~al~l~~~~~~~~Al~~l~~l~~~-~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~~p--~~~~~~~~ 608 (1157)
T PRK11447 532 VYAYGLYLSGSDRDRAALAHLNTLPRA-QWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQQP--PSTRIDLT 608 (1157)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHhCCch-hcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHhCC--CCchHHHH
Confidence 333333445556666666666554321 111111 112234556777888888888877433 34455666
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHccCCCCCcchHHHHHHHhhcCChHHHHHHHHHhh
Q 007808 470 LLGSCRVYKNVELAELALERLTELEPKNPANFVMLSNIYGDLGRWKDVARIKVAMR 525 (589)
Q Consensus 470 l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 525 (589)
+...+.+.|++++|+..|+++++.+|+++.++..++.+|...|++++|++.++++.
T Consensus 609 La~~~~~~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll 664 (1157)
T PRK11447 609 LADWAQQRGDYAAARAAYQRVLTREPGNADARLGLIEVDIAQGDLAAARAQLAKLP 664 (1157)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHh
Confidence 77888999999999999999999999999999999999999999999999999875
No 10
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.97 E-value=1.2e-25 Score=248.69 Aligned_cols=515 Identities=13% Similarity=0.036 Sum_probs=383.7
Q ss_pred HHHHHHHHccCChhHHHHHhhcCCCCCcccHH---HHHH-HHHcCCChhHHHHHHHHhhhCCCCCCcccHHHHHHHHhcc
Q 007808 38 PRIITACAQLKQMTYARKMFDKITDQNVVSWN---AMFN-GYAQNEFHRTVVVLFTQMKKLDAMPNCFTFPIVLKSCVKI 113 (589)
Q Consensus 38 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~---~ll~-~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~ 113 (589)
..+...+.+.|++++|...|+...+.+..... .... .....|++++|++.|+++.+.. +.+...+..+...+...
T Consensus 116 l~~A~ll~~~g~~~eA~~~~~~~l~~~p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~-P~~~~~~~~LA~ll~~~ 194 (1157)
T PRK11447 116 LQQARLLATTGRTEEALASYDKLFNGAPPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADY-PGNTGLRNTLALLLFSS 194 (1157)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHccCCCCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHcc
Confidence 34455678889999999999887652221111 1111 1224588899999999988764 33555677777888888
Q ss_pred CChHHHHHHHHHHHHhCC------------------C--------------CchH---------------------HHhH
Q 007808 114 NALREGEELHCLVLKNGF------------------R--------------ANIF---------------------VGTA 140 (589)
Q Consensus 114 ~~~~~a~~~~~~~~~~~~------------------~--------------~~~~---------------------~~~~ 140 (589)
|+.++|.+.++++.+... . |+.. ....
T Consensus 195 g~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~~~~ 274 (1157)
T PRK11447 195 GRRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAFRARA 274 (1157)
T ss_pred CCHHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcchHHHH
Confidence 898888888888754321 0 0000 0011
Q ss_pred HHHHHHcCCChHHHHHHHccCCC---CCeehHHHHHHHHHhCCCHHHHHHHHHhCCCCCh-----hHH------------
Q 007808 141 LIELYSTGKAIEAAYKVFGEMDE---RNVVVWTSMINGYISCGDIVSARCLFELAPERDV-----ILW------------ 200 (589)
Q Consensus 141 li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-----~~~------------ 200 (589)
....+...|++++|+..|++..+ .+..++..+...+.+.|++++|...|++..+.++ ..|
T Consensus 275 ~G~~~~~~g~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~ 354 (1157)
T PRK11447 275 QGLAAVDSGQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLL 354 (1157)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHH
Confidence 23456678999999999998865 3667899999999999999999999988764321 112
Q ss_pred HHHHHHHhcCCChHHHHHHhcccCC---CChhhHHHHHHHHHhcCCHHHHHHHHhhCCC--C-CchhHHHHHHHHHhCCC
Q 007808 201 NTIVSGYIDVRNMIEARKLFDQMPK---KDVISWNTMLSGYANNGDVEECKRLFEEMPE--R-NVFSWNGLIGGYANNGL 274 (589)
Q Consensus 201 ~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~g~ 274 (589)
......+.+.|++++|+..|+++.+ .+...+..+...+...|++++|++.|+++.+ | +...+..+...|. .++
T Consensus 355 ~~~g~~~~~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~-~~~ 433 (1157)
T PRK11447 355 IQQGDAALKANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYR-QQS 433 (1157)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-hcC
Confidence 1234567789999999999999876 3556777889999999999999999999886 3 4456666777764 467
Q ss_pred hHHHHHHHHHHHHcCCCC--------CcHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCh
Q 007808 275 FFEVLDAFKRMLTEGRVF--------PNDATIVTVLSACARLGALDFSKWVHVYAEYNGYQGNVCVGNALIDMYAKCGII 346 (589)
Q Consensus 275 ~~~A~~~~~~~~~~~~~~--------p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 346 (589)
.++|+.+++.+.... .. .....+......+...|++++|...++++.+.. |.+...+..+...|.+.|++
T Consensus 434 ~~~A~~~l~~l~~~~-~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~-P~~~~~~~~LA~~~~~~G~~ 511 (1157)
T PRK11447 434 PEKALAFIASLSASQ-RRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALD-PGSVWLTYRLAQDLRQAGQR 511 (1157)
T ss_pred HHHHHHHHHhCCHHH-HHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCH
Confidence 899999887654322 00 011234556677888999999999999999875 45677888899999999999
Q ss_pred HHHHHHHhhCCC--C-CcchHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHh---------HHHHHHHHHhccCcHHH
Q 007808 347 ENAVDVFNSMDT--K-DLITWNTIISGLAMHGRGAGALSLFHEMKNAGEMPDGI---------TFIGILCACTHMGLVEE 414 (589)
Q Consensus 347 ~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~---------~~~~l~~~~~~~g~~~~ 414 (589)
++|...++++.+ | +...+..+...+...+++++|+..++.+......++.. .+..+...+...|+.++
T Consensus 512 ~~A~~~l~~al~~~P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~e 591 (1157)
T PRK11447 512 SQADALMRRLAQQKPNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAE 591 (1157)
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHH
Confidence 999999998753 3 45556666666778999999999998865432222221 23345677889999999
Q ss_pred HHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHhhC-CCCC-CHHHHHHHHHHHhcCCCHHHHHHHHHHHHc
Q 007808 415 GLSYFQSMAMDYSIVPQIEHYGCMVDLLARAGRLAEAVDFVKRM-PIEA-DAVIWANLLGSCRVYKNVELAELALERLTE 492 (589)
Q Consensus 415 A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 492 (589)
|.++++. .+++...+..+...|.+.|++++|++.|+++ ...| +...+..+...+...|++++|++.++++.+
T Consensus 592 A~~~l~~------~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~ 665 (1157)
T PRK11447 592 AEALLRQ------QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPGNADARLGLIEVDIAQGDLAAARAQLAKLPA 665 (1157)
T ss_pred HHHHHHh------CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhc
Confidence 9999872 2355667788999999999999999999998 4455 577888889999999999999999999999
Q ss_pred cCCCCCcchHHHHHHHhhcCChHHHHHHHHHhhhCCCccCCccceeeeCCeeeeeccccCCCchHHHHHHHHHHHHcccC
Q 007808 493 LEPKNPANFVMLSNIYGDLGRWKDVARIKVAMRDTGFKKLPGCSSIEVNEVVMLGCLSRELDRKSIVRAEANMIKLLPQN 572 (589)
Q Consensus 493 ~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~ 572 (589)
..|+++..+..++.++...|++++|.++++++....-+. + -.++++.++..++.++...|+.
T Consensus 666 ~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~-~-----------------~~~~~a~~~~~~a~~~~~~G~~ 727 (1157)
T PRK11447 666 TANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQ-P-----------------PSMESALVLRDAARFEAQTGQP 727 (1157)
T ss_pred cCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccC-C-----------------cchhhHHHHHHHHHHHHHcCCH
Confidence 999999999999999999999999999999986222100 0 0012445777789999999999
Q ss_pred CCCcchHh
Q 007808 573 NHPLTFIV 580 (589)
Q Consensus 573 ~~~~~~~~ 580 (589)
++|++...
T Consensus 728 ~~A~~~y~ 735 (1157)
T PRK11447 728 QQALETYK 735 (1157)
T ss_pred HHHHHHHH
Confidence 88887744
No 11
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.96 E-value=9.8e-25 Score=230.34 Aligned_cols=528 Identities=12% Similarity=0.019 Sum_probs=352.1
Q ss_pred HHHHHHHHHhCCCCCccchHHHHHHHHccCChhHHHHHhhcCCC--CCcccHHHHHHHHHcCCChhHHHHHHHHhhhCCC
Q 007808 19 HQIQTQVVTSGLEKSDYITPRIITACAQLKQMTYARKMFDKITD--QNVVSWNAMFNGYAQNEFHRTVVVLFTQMKKLDA 96 (589)
Q Consensus 19 ~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~ 96 (589)
...+....+.. |-+..++..+...|.+.|++++|+..+++..+ |+-..|..++..+ +++++|..+++++.+..
T Consensus 64 ~~~l~~Al~~d-P~n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ldP~n~~~~~~La~i---~~~~kA~~~ye~l~~~~- 138 (987)
T PRK09782 64 IREFEYIHQQV-PDNIPLTLYLAEAYRHFGHDDRARLLLEDQLKRHPGDARLERSLAAI---PVEVKSVTTVEELLAQQ- 138 (987)
T ss_pred HHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHHHHHh---ccChhHHHHHHHHHHhC-
Confidence 44444444433 33457777888888888888888888888765 3323333333333 77788888888887764
Q ss_pred CCCcccHHHHHHHH-----hccCChHHHHHHHHHHHHhCCCCchHHHhHH-HHHHHcCCChHHHHHHHccCCCC---Cee
Q 007808 97 MPNCFTFPIVLKSC-----VKINALREGEELHCLVLKNGFRANIFVGTAL-IELYSTGKAIEAAYKVFGEMDER---NVV 167 (589)
Q Consensus 97 ~p~~~~~~~ll~~~-----~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l-i~~~~~~g~~~~A~~~~~~~~~~---~~~ 167 (589)
+-+...+..+.... .+..+.++|.+.++ .....+.|+..+.... .+.|.+.|++++|++.+.++.+. +..
T Consensus 139 P~n~~~~~~la~~~~~~~~l~y~q~eqAl~AL~-lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~lL~~L~k~~pl~~~ 217 (987)
T PRK09782 139 KACDAVPTLRCRSEVGQNALRLAQLPVARAQLN-DATFAASPEGKTLRTDLLQRAIYLKQWSQADTLYNEARQQNTLSAA 217 (987)
T ss_pred CCChhHHHHHHHHhhccchhhhhhHHHHHHHHH-HhhhCCCCCcHHHHHHHHHHHHHHhCHHHHHHHHHHHHhcCCCCHH
Confidence 22344444444440 11233455555555 3333334445544444 78888888888888888888763 233
Q ss_pred hHHHHHHHHHh-CCCHHHHHHHHHhCCCCChhHHHHHHHHHhcCCChHHHHHHhcccCC-----CChhh-----------
Q 007808 168 VWTSMINGYIS-CGDIVSARCLFELAPERDVILWNTIVSGYIDVRNMIEARKLFDQMPK-----KDVIS----------- 230 (589)
Q Consensus 168 ~~~~l~~~~~~-~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-----~~~~~----------- 230 (589)
....+...|.. .++ +++..+++...+.|+..+..++..+.+.|+.++|.++++++.. |+..+
T Consensus 218 ~~~~L~~ay~q~l~~-~~a~al~~~~lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~~~~~~~~~~~~~l~r~~~~ 296 (987)
T PRK09782 218 ERRQWFDVLLAGQLD-DRLLALQSQGIFTDPQSRITYATALAYRGEKARLQHYLIENKPLFTTDAQEKSWLYLLSKYSAN 296 (987)
T ss_pred HHHHHHHHHHHhhCH-HHHHHHhchhcccCHHHHHHHHHHHHHCCCHHHHHHHHHhCcccccCCCccHHHHHHHHhccCc
Confidence 35566667777 366 7777777655556788888888888999999999888887753 11111
Q ss_pred -------------------HHHHHHHHHhcCCHHHHHHHHhhCCCC--------------------------------Cc
Q 007808 231 -------------------WNTMLSGYANNGDVEECKRLFEEMPER--------------------------------NV 259 (589)
Q Consensus 231 -------------------~~~l~~~~~~~~~~~~A~~~~~~~~~~--------------------------------~~ 259 (589)
...++..+.+.++++.++++...-... +.
T Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~y~~~~~~~ 376 (987)
T PRK09782 297 PVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLLATLPANEMLEERYAVSVATRNKAEALRLARLLYQQEPANL 376 (987)
T ss_pred hhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCCcchHHHHHHhhccccCchhHHHHHHHHHHhcCCCCH
Confidence 122356667777777777664322110 11
Q ss_pred hhHHHHHHHHHhCCChHHHHHHHHHHHH-cCCCCCcHHHHHHHHHHHHhcCChh---HHHHH------------------
Q 007808 260 FSWNGLIGGYANNGLFFEVLDAFKRMLT-EGRVFPNDATIVTVLSACARLGALD---FSKWV------------------ 317 (589)
Q Consensus 260 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~p~~~~~~~l~~~~~~~~~~~---~a~~~------------------ 317 (589)
.....+.....+.|+.++|.++|+.... .+...++......++..+.+.+... .+..+
T Consensus 377 ~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 456 (987)
T PRK09782 377 TRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSKPLPLAEQRQWQSQLPG 456 (987)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhccccccchhHHHHhhhhh
Confidence 1111222334567888888888888766 2212333444446666666665422 22111
Q ss_pred ----HHHHHHc-C-CCC--ChhHHHHHHHHHHhcCChHHHHHHHhhCCCCCcchHHHH--HHHHHhCCChHHHHHHHHHH
Q 007808 318 ----HVYAEYN-G-YQG--NVCVGNALIDMYAKCGIIENAVDVFNSMDTKDLITWNTI--ISGLAMHGRGAGALSLFHEM 387 (589)
Q Consensus 318 ----~~~~~~~-~-~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l--~~~~~~~~~~~~A~~~~~~m 387 (589)
....... + .++ +...+..+..++.. ++.++|...+.+.....+..+..+ ...+...|++++|...|+++
T Consensus 457 ~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~Pd~~~~L~lA~al~~~Gr~eeAi~~~rka 535 (987)
T PRK09782 457 IADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQPDAWQHRAVAYQAYQVEDYATALAAWQKI 535 (987)
T ss_pred hhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhCCchHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 1111111 1 133 56677777777776 788888887776653222233343 44456889999999999987
Q ss_pred HHCCCCCCHhHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHHhcCCHHHHHHHHhhC-CCCCCHH
Q 007808 388 KNAGEMPDGITFIGILCACTHMGLVEEGLSYFQSMAMDYSIVPQ-IEHYGCMVDLLARAGRLAEAVDFVKRM-PIEADAV 465 (589)
Q Consensus 388 ~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~ 465 (589)
... +|+...+..+..++.+.|++++|..++++.... .|+ ...+..+...+.+.|++++|+..+++. ...|+..
T Consensus 536 ~~~--~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l---~P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l~P~~~ 610 (987)
T PRK09782 536 SLH--DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQR---GLGDNALYWWLHAQRYIPGQPELALNDLTRSLNIAPSAN 610 (987)
T ss_pred hcc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhc---CCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCHH
Confidence 653 455555667777888899999999999888653 243 333334444455669999999999887 5678888
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHccCCCCCcchHHHHHHHhhcCChHHHHHHHHHhhhCCCccCCccceeeeCCeee
Q 007808 466 IWANLLGSCRVYKNVELAELALERLTELEPKNPANFVMLSNIYGDLGRWKDVARIKVAMRDTGFKKLPGCSSIEVNEVVM 545 (589)
Q Consensus 466 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 545 (589)
.+..+..++.+.|++++|+..++++++++|+++..+..++.++...|++++|++.+++..
T Consensus 611 a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL-------------------- 670 (987)
T PRK09782 611 AYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLERAH-------------------- 670 (987)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH--------------------
Confidence 888888889999999999999999999999999999999999999999999999998885
Q ss_pred eeccccCCCchHHHHHHHHHHHHcccCCCCcchHhhhh
Q 007808 546 LGCLSRELDRKSIVRAEANMIKLLPQNNHPLTFIVVIF 583 (589)
Q Consensus 546 ~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 583 (589)
+++|+++.++.++|+++..+|+.++|++.+....
T Consensus 671 ----~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al 704 (987)
T PRK09782 671 ----KGLPDDPALIRQLAYVNQRLDDMAATQHYARLVI 704 (987)
T ss_pred ----HhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 7899999999999999999999998888766543
No 12
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.95 E-value=1.6e-22 Score=213.72 Aligned_cols=526 Identities=10% Similarity=0.024 Sum_probs=366.9
Q ss_pred HHHHhccCCchHHHHHHHHHHhCCCCCccchHHHHHHHHccCChhHHHHHhhcCCC--C-CcccHHHHHHH--------H
Q 007808 7 AHSEQLETTKHLHQIQTQVVTSGLEKSDYITPRIITACAQLKQMTYARKMFDKITD--Q-NVVSWNAMFNG--------Y 75 (589)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~-~~~~~~~ll~~--------~ 75 (589)
..+...+..+......+...+. .|+...|..++..+ ++.++|..+++++.. | +..++..+... |
T Consensus 86 ~~yl~~g~~~~A~~~~~kAv~l--dP~n~~~~~~La~i---~~~~kA~~~ye~l~~~~P~n~~~~~~la~~~~~~~~l~y 160 (987)
T PRK09782 86 EAYRHFGHDDRARLLLEDQLKR--HPGDARLERSLAAI---PVEVKSVTTVEELLAQQKACDAVPTLRCRSEVGQNALRL 160 (987)
T ss_pred HHHHHCCCHHHHHHHHHHHHhc--CcccHHHHHHHHHh---ccChhHHHHHHHHHHhCCCChhHHHHHHHHhhccchhhh
Confidence 3344444455555555555543 35545555444333 889999999999875 3 34445444444 5
Q ss_pred HcCCChhHHHHHHHHhhhCCCCCCcccHHHH-HHHHhccCChHHHHHHHHHHHHhCCCCchHHHhHHHHHHHc-CCChHH
Q 007808 76 AQNEFHRTVVVLFTQMKKLDAMPNCFTFPIV-LKSCVKINALREGEELHCLVLKNGFRANIFVGTALIELYST-GKAIEA 153 (589)
Q Consensus 76 ~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l-l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~-~g~~~~ 153 (589)
.+. ++|.+.++ .......|+..+.... .+.+...+++++|.+++.++.+.++ .+......|..+|.. .++ ++
T Consensus 161 ~q~---eqAl~AL~-lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~lL~~L~k~~p-l~~~~~~~L~~ay~q~l~~-~~ 234 (987)
T PRK09782 161 AQL---PVARAQLN-DATFAASPEGKTLRTDLLQRAIYLKQWSQADTLYNEARQQNT-LSAAERRQWFDVLLAGQLD-DR 234 (987)
T ss_pred hhH---HHHHHHHH-HhhhCCCCCcHHHHHHHHHHHHHHhCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHhhCH-HH
Confidence 555 55555555 3333334445545555 8888899999999999999999873 345556677778887 466 88
Q ss_pred HHHHHccCCCCCeehHHHHHHHHHhCCCHHHHHHHHHhCCC-----CChh------------------------------
Q 007808 154 AYKVFGEMDERNVVVWTSMINGYISCGDIVSARCLFELAPE-----RDVI------------------------------ 198 (589)
Q Consensus 154 A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-----~~~~------------------------------ 198 (589)
+..+++...+.+...+..++..|.+.|+.++|.+.++++.. ++..
T Consensus 235 a~al~~~~lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~~~~~~~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~ 314 (987)
T PRK09782 235 LLALQSQGIFTDPQSRITYATALAYRGEKARLQHYLIENKPLFTTDAQEKSWLYLLSKYSANPVQALANYTVQFADNRQY 314 (987)
T ss_pred HHHHhchhcccCHHHHHHHHHHHHHCCCHHHHHHHHHhCcccccCCCccHHHHHHHHhccCchhhhccchhhhhHHHHHH
Confidence 88887765556788899999999999999999999988752 1111
Q ss_pred HHHHHHHHHhcCCChHHHHHHhcccCC-------------------------------C-ChhhHHHHHHHHHhcCCHHH
Q 007808 199 LWNTIVSGYIDVRNMIEARKLFDQMPK-------------------------------K-DVISWNTMLSGYANNGDVEE 246 (589)
Q Consensus 199 ~~~~l~~~~~~~g~~~~a~~~~~~~~~-------------------------------~-~~~~~~~l~~~~~~~~~~~~ 246 (589)
..-.++..+.+.++++-++++...-.. | +......+.-...+.|+.++
T Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~l~q~~~~~~~~~~~~~ 394 (987)
T PRK09782 315 VVGATLPVLLKEGQYDAAQKLLATLPANEMLEERYAVSVATRNKAEALRLARLLYQQEPANLTRLDQLTWQLMQNGQSRE 394 (987)
T ss_pred HHHHHHHHHHhccHHHHHHHHhcCCCcchHHHHHHhhccccCchhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcccHHH
Confidence 111235666777777776666432211 0 11122222234456899999
Q ss_pred HHHHHhhCCC-C-Cc----hhHHHHHHHHHhCCC---hHHHHHH----------------------HHHHHHcCCC-CC-
Q 007808 247 CKRLFEEMPE-R-NV----FSWNGLIGGYANNGL---FFEVLDA----------------------FKRMLTEGRV-FP- 293 (589)
Q Consensus 247 A~~~~~~~~~-~-~~----~~~~~l~~~~~~~g~---~~~A~~~----------------------~~~~~~~~~~-~p- 293 (589)
|.++|+.... + +. ....-++..|.+.+. ..++..+ +......-+. ++
T Consensus 395 a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~ 474 (987)
T PRK09782 395 AADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPS 474 (987)
T ss_pred HHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCC
Confidence 9999998876 2 22 233456667766655 3333222 2222221111 33
Q ss_pred -cHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHhhCCC--CCcchHHHHHHH
Q 007808 294 -NDATIVTVLSACARLGALDFSKWVHVYAEYNGYQGNVCVGNALIDMYAKCGIIENAVDVFNSMDT--KDLITWNTIISG 370 (589)
Q Consensus 294 -~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~l~~~ 370 (589)
+...+..+..++.. ++.++|...+....... |+......+...+...|++++|...|+++.. ++...+..+..+
T Consensus 475 ~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~--Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~~p~~~a~~~la~a 551 (987)
T PRK09782 475 YDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQ--PDAWQHRAVAYQAYQVEDYATALAAWQKISLHDMSNEDLLAAANT 551 (987)
T ss_pred CCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhC--CchHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCcHHHHHHHHH
Confidence 56667777766665 88889999888877664 4444444455566789999999999997763 444567777888
Q ss_pred HHhCCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHH
Q 007808 371 LAMHGRGAGALSLFHEMKNAGEMPDGITFIGILCACTHMGLVEEGLSYFQSMAMDYSIVPQIEHYGCMVDLLARAGRLAE 450 (589)
Q Consensus 371 ~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 450 (589)
+.+.|++++|...+++..+.+ +++...+..+.......|++++|...+++.++ ..|+...+..+..++.+.|++++
T Consensus 552 ll~~Gd~~eA~~~l~qAL~l~-P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~---l~P~~~a~~~LA~~l~~lG~~de 627 (987)
T PRK09782 552 AQAAGNGAARDRWLQQAEQRG-LGDNALYWWLHAQRYIPGQPELALNDLTRSLN---IAPSANAYVARATIYRQRHNVPA 627 (987)
T ss_pred HHHCCCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHhCCCHHHHHHHHHHHHH---hCCCHHHHHHHHHHHHHCCCHHH
Confidence 999999999999999999853 22333343444455567999999999999974 45788899999999999999999
Q ss_pred HHHHHhhC-CCCC-CHHHHHHHHHHHhcCCCHHHHHHHHHHHHccCCCCCcchHHHHHHHhhcCChHHHHHHHHHhhhCC
Q 007808 451 AVDFVKRM-PIEA-DAVIWANLLGSCRVYKNVELAELALERLTELEPKNPANFVMLSNIYGDLGRWKDVARIKVAMRDTG 528 (589)
Q Consensus 451 A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 528 (589)
|+..+++. ...| +...+..+..++...|++++|+..++++++++|+++.++..++.++...|++++|+..+++..
T Consensus 628 A~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al--- 704 (987)
T PRK09782 628 AVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLVI--- 704 (987)
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH---
Confidence 99999998 4566 456677777899999999999999999999999999999999999999999999999999986
Q ss_pred CccCCccceeeeCCeeeeeccccCCCchHHHHHHHHHHHHcccCCC
Q 007808 529 FKKLPGCSSIEVNEVVMLGCLSRELDRKSIVRAEANMIKLLPQNNH 574 (589)
Q Consensus 529 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~ 574 (589)
+++|+++.+.+..+++...-....+
T Consensus 705 ---------------------~l~P~~a~i~~~~g~~~~~~~~~~~ 729 (987)
T PRK09782 705 ---------------------DDIDNQALITPLTPEQNQQRFNFRR 729 (987)
T ss_pred ---------------------hcCCCCchhhhhhhHHHHHHHHHHH
Confidence 6677777777777777665554433
No 13
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.95 E-value=1.2e-24 Score=204.10 Aligned_cols=442 Identities=14% Similarity=0.143 Sum_probs=362.0
Q ss_pred HHHHHHHHHcCCChhHHHHHHHHhhhCCCCCCcccHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchHHHhHHHHHHHc
Q 007808 68 WNAMFNGYAQNEFHRTVVVLFTQMKKLDAMPNCFTFPIVLKSCVKINALREGEELHCLVLKNGFRANIFVGTALIELYST 147 (589)
Q Consensus 68 ~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 147 (589)
-..+..-..+.|++.+|.+.-...-+.+ +.+......+-..+....+.+....--...++.. +.-..+|..+.+.+-.
T Consensus 51 ~l~lah~~yq~gd~~~a~~h~nmv~~~d-~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~-~q~ae~ysn~aN~~ke 128 (966)
T KOG4626|consen 51 RLELAHRLYQGGDYKQAEKHCNMVGQED-PTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRKN-PQGAEAYSNLANILKE 128 (966)
T ss_pred HHHHHHHHHhccCHHHHHHHHhHhhccC-CCcccceeeehhhhhcccchhhhhhhhhhhhhcc-chHHHHHHHHHHHHHH
Confidence 3455666778999999998876665443 2333344444455556666666555544444443 4456789999999999
Q ss_pred CCChHHHHHHHccCCC---CCeehHHHHHHHHHhCCCHHHHHHHHHhCCCCChhH---HHHHHHHHhcCCChHHHHHHhc
Q 007808 148 GKAIEAAYKVFGEMDE---RNVVVWTSMINGYISCGDIVSARCLFELAPERDVIL---WNTIVSGYIDVRNMIEARKLFD 221 (589)
Q Consensus 148 ~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~---~~~l~~~~~~~g~~~~a~~~~~ 221 (589)
.|++++|+..++.+.+ ..+..|..+..++...|+.+.|.+.|....+-++.. .+.+.......|+..+|...+.
T Consensus 129 rg~~~~al~~y~~aiel~p~fida~inla~al~~~~~~~~a~~~~~~alqlnP~l~ca~s~lgnLlka~Grl~ea~~cYl 208 (966)
T KOG4626|consen 129 RGQLQDALALYRAAIELKPKFIDAYINLAAALVTQGDLELAVQCFFEALQLNPDLYCARSDLGNLLKAEGRLEEAKACYL 208 (966)
T ss_pred hchHHHHHHHHHHHHhcCchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcCcchhhhhcchhHHHHhhcccchhHHHHH
Confidence 9999999999998876 356789999999999999999999998887665533 3345555667899999999998
Q ss_pred ccCC--CC-hhhHHHHHHHHHhcCCHHHHHHHHhhCCC--CC-chhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCc-
Q 007808 222 QMPK--KD-VISWNTMLSGYANNGDVEECKRLFEEMPE--RN-VFSWNGLIGGYANNGLFFEVLDAFKRMLTEGRVFPN- 294 (589)
Q Consensus 222 ~~~~--~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~- 294 (589)
+..+ |. ...|..|...+-..|+...|+..|++..+ |+ ...|-.|...|...+.+++|+..|.+..... |+
T Consensus 209 kAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lr---pn~ 285 (966)
T KOG4626|consen 209 KAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIFDRAVSCYLRALNLR---PNH 285 (966)
T ss_pred HHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcC---Ccc
Confidence 8775 33 46789999999999999999999999886 43 4678889999999999999999999998854 55
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHhhCCC---CCcchHHHHHHHH
Q 007808 295 DATIVTVLSACARLGALDFSKWVHVYAEYNGYQGNVCVGNALIDMYAKCGIIENAVDVFNSMDT---KDLITWNTIISGL 371 (589)
Q Consensus 295 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~ 371 (589)
...+..+...|...|.++.|...|++.++.. |.-...|+.|..++-..|++.+|.+.|++... ....+.+.|...|
T Consensus 286 A~a~gNla~iYyeqG~ldlAI~~Ykral~~~-P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~hadam~NLgni~ 364 (966)
T KOG4626|consen 286 AVAHGNLACIYYEQGLLDLAIDTYKRALELQ-PNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPNHADAMNNLGNIY 364 (966)
T ss_pred hhhccceEEEEeccccHHHHHHHHHHHHhcC-CCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCCccHHHHHHHHHHH
Confidence 5577788888999999999999999999875 44577899999999999999999999998773 2456788899999
Q ss_pred HhCCChHHHHHHHHHHHHCCCCCC-HhHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHHhcCCHH
Q 007808 372 AMHGRGAGALSLFHEMKNAGEMPD-GITFIGILCACTHMGLVEEGLSYFQSMAMDYSIVPQ-IEHYGCMVDLLARAGRLA 449 (589)
Q Consensus 372 ~~~~~~~~A~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~ 449 (589)
...|.+++|..+|....+ +.|. ...++.|...|-+.|++++|+..|++.+ .+.|+ ...|+.+...|-..|+.+
T Consensus 365 ~E~~~~e~A~~ly~~al~--v~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykeal---rI~P~fAda~~NmGnt~ke~g~v~ 439 (966)
T KOG4626|consen 365 REQGKIEEATRLYLKALE--VFPEFAAAHNNLASIYKQQGNLDDAIMCYKEAL---RIKPTFADALSNMGNTYKEMGDVS 439 (966)
T ss_pred HHhccchHHHHHHHHHHh--hChhhhhhhhhHHHHHHhcccHHHHHHHHHHHH---hcCchHHHHHHhcchHHHHhhhHH
Confidence 999999999999999988 5665 4578899999999999999999999987 67787 678999999999999999
Q ss_pred HHHHHHhhC-CCCCC-HHHHHHHHHHHhcCCCHHHHHHHHHHHHccCCCCCcchHHHHHHHhhcCChHHHHHH
Q 007808 450 EAVDFVKRM-PIEAD-AVIWANLLGSCRVYKNVELAELALERLTELEPKNPANFVMLSNIYGDLGRWKDVARI 520 (589)
Q Consensus 450 ~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~ 520 (589)
.|++.+.++ .+.|. ...++.|...|...|+..+|++.|+.+++++|+.|.+|.+++.++.--.+|.+--+-
T Consensus 440 ~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPDfpdA~cNllh~lq~vcdw~D~d~~ 512 (966)
T KOG4626|consen 440 AAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPDFPDAYCNLLHCLQIVCDWTDYDKR 512 (966)
T ss_pred HHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCCCchhhhHHHHHHHHHhcccchHHH
Confidence 999999988 57775 467888999999999999999999999999999999999999998777777664333
No 14
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.95 E-value=2.8e-25 Score=208.31 Aligned_cols=432 Identities=13% Similarity=0.145 Sum_probs=354.3
Q ss_pred HHHHHHHHhccCChHHHHHHHHHHHHhCCCCchHHHhHHHHHHHcCCChHHHHHHHccCCC---CCeehHHHHHHHHHhC
Q 007808 103 FPIVLKSCVKINALREGEELHCLVLKNGFRANIFVGTALIELYSTGKAIEAAYKVFGEMDE---RNVVVWTSMINGYISC 179 (589)
Q Consensus 103 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~ 179 (589)
...|..-..+.|++.+|++.-...-..+ +.+....-.+-..+....+.++....-....+ ....+|+.+.+.+-..
T Consensus 51 ~l~lah~~yq~gd~~~a~~h~nmv~~~d-~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~~q~ae~ysn~aN~~ker 129 (966)
T KOG4626|consen 51 RLELAHRLYQGGDYKQAEKHCNMVGQED-PTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRKNPQGAEAYSNLANILKER 129 (966)
T ss_pred HHHHHHHHHhccCHHHHHHHHhHhhccC-CCcccceeeehhhhhcccchhhhhhhhhhhhhccchHHHHHHHHHHHHHHh
Confidence 4445556668899999988766554433 22333333344556666666665544333333 3456899999999999
Q ss_pred CCHHHHHHHHHhCCCC---ChhHHHHHHHHHhcCCChHHHHHHhcccCC--CChhh-HHHHHHHHHhcCCHHHHHHHHhh
Q 007808 180 GDIVSARCLFELAPER---DVILWNTIVSGYIDVRNMIEARKLFDQMPK--KDVIS-WNTMLSGYANNGDVEECKRLFEE 253 (589)
Q Consensus 180 g~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~~~-~~~l~~~~~~~~~~~~A~~~~~~ 253 (589)
|++++|+.+++.+.+. ....|..+..++...|+.+.|.+.|.+..+ |+... ...+...+...|++++|...|.+
T Consensus 130 g~~~~al~~y~~aiel~p~fida~inla~al~~~~~~~~a~~~~~~alqlnP~l~ca~s~lgnLlka~Grl~ea~~cYlk 209 (966)
T KOG4626|consen 130 GQLQDALALYRAAIELKPKFIDAYINLAAALVTQGDLELAVQCFFEALQLNPDLYCARSDLGNLLKAEGRLEEAKACYLK 209 (966)
T ss_pred chHHHHHHHHHHHHhcCchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcCcchhhhhcchhHHHHhhcccchhHHHHHH
Confidence 9999999999988754 557899999999999999999999999887 43332 23455666678999999999988
Q ss_pred CCC--CC-chhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCc-HHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC
Q 007808 254 MPE--RN-VFSWNGLIGGYANNGLFFEVLDAFKRMLTEGRVFPN-DATIVTVLSACARLGALDFSKWVHVYAEYNGYQGN 329 (589)
Q Consensus 254 ~~~--~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 329 (589)
..+ |. ...|+.|...+..+|+...|+..|++.++.+ |+ ...|..+...|...+.++.|...|.++.... +..
T Consensus 210 Ai~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkld---P~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lr-pn~ 285 (966)
T KOG4626|consen 210 AIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLD---PNFLDAYINLGNVYKEARIFDRAVSCYLRALNLR-PNH 285 (966)
T ss_pred HHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhcCC---CcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcC-Ccc
Confidence 775 43 4679999999999999999999999999854 55 4578889999999999999999999888764 446
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHhhCCCCC---cchHHHHHHHHHhCCChHHHHHHHHHHHHCCCCC-CHhHHHHHHHH
Q 007808 330 VCVGNALIDMYAKCGIIENAVDVFNSMDTKD---LITWNTIISGLAMHGRGAGALSLFHEMKNAGEMP-DGITFIGILCA 405 (589)
Q Consensus 330 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p-~~~~~~~l~~~ 405 (589)
..++..+...|..+|.++.|++.|++..+.+ +..|+.|..++-..|+..+|...+.+.... .| ...+.+.|...
T Consensus 286 A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l--~p~hadam~NLgni 363 (966)
T KOG4626|consen 286 AVAHGNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALRL--CPNHADAMNNLGNI 363 (966)
T ss_pred hhhccceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHHh--CCccHHHHHHHHHH
Confidence 7778888889999999999999999987433 468999999999999999999999999984 55 45678899999
Q ss_pred HhccCcHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHHhcCCHHHHHHHHhhC-CCCCC-HHHHHHHHHHHhcCCCHHH
Q 007808 406 CTHMGLVEEGLSYFQSMAMDYSIVPQ-IEHYGCMVDLLARAGRLAEAVDFVKRM-PIEAD-AVIWANLLGSCRVYKNVEL 482 (589)
Q Consensus 406 ~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~ 482 (589)
+...|.+++|..+|.... .+.|. ....+.|...|.++|++++|+..++++ .++|+ ...++.+...|...|+...
T Consensus 364 ~~E~~~~e~A~~ly~~al---~v~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAda~~NmGnt~ke~g~v~~ 440 (966)
T KOG4626|consen 364 YREQGKIEEATRLYLKAL---EVFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFADALSNMGNTYKEMGDVSA 440 (966)
T ss_pred HHHhccchHHHHHHHHHH---hhChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHHHHHhcchHHHHhhhHHH
Confidence 999999999999999887 44566 567889999999999999999999998 68886 4678999999999999999
Q ss_pred HHHHHHHHHccCCCCCcchHHHHHHHhhcCChHHHHHHHHHhhhCCCccCCccceeeeCCeeeeeccccCCCchHHHHHH
Q 007808 483 AELALERLTELEPKNPANFVMLSNIYGDLGRWKDVARIKVAMRDTGFKKLPGCSSIEVNEVVMLGCLSRELDRKSIVRAE 562 (589)
Q Consensus 483 A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l 562 (589)
|.+.|.+++.++|.-.+++.+|+.+|..+|+..+|+.-|+... +++||.|+++-+|
T Consensus 441 A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aL------------------------klkPDfpdA~cNl 496 (966)
T KOG4626|consen 441 AIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTAL------------------------KLKPDFPDAYCNL 496 (966)
T ss_pred HHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHH------------------------ccCCCCchhhhHH
Confidence 9999999999999999999999999999999999999999885 7888888888777
Q ss_pred HHHHHH
Q 007808 563 ANMIKL 568 (589)
Q Consensus 563 ~~~~~~ 568 (589)
.....-
T Consensus 497 lh~lq~ 502 (966)
T KOG4626|consen 497 LHCLQI 502 (966)
T ss_pred HHHHHH
Confidence 665443
No 15
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.91 E-value=1.2e-20 Score=196.42 Aligned_cols=414 Identities=11% Similarity=-0.004 Sum_probs=282.1
Q ss_pred HHHHHHHHhccCChHHHHHHHHHHHHhCCCCchHHHhHHHHHHHcCCChHHHHHHHccCCCC---CeehHHHHHHHHHhC
Q 007808 103 FPIVLKSCVKINALREGEELHCLVLKNGFRANIFVGTALIELYSTGKAIEAAYKVFGEMDER---NVVVWTSMINGYISC 179 (589)
Q Consensus 103 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~ 179 (589)
+......+...|++++|...|++.++. .|+...|..+..+|.+.|++++|++.++...+. +..+|..+..+|...
T Consensus 130 ~k~~G~~~~~~~~~~~Ai~~y~~al~~--~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~a~a~~~l 207 (615)
T TIGR00990 130 LKEKGNKAYRNKDFNKAIKLYSKAIEC--KPDPVYYSNRAACHNALGDWEKVVEDTTAALELDPDYSKALNRRANAYDGL 207 (615)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHc
Confidence 334455666777777787777777664 355666777777777777777777777776642 334677777777777
Q ss_pred CCHHHHHHHHHhCCCC---ChhHHHHHHHHHhcCCChHHHHHHhcccCCCChhhHHHHHHHHHhcCCHHHHHHHHhhCCC
Q 007808 180 GDIVSARCLFELAPER---DVILWNTIVSGYIDVRNMIEARKLFDQMPKKDVISWNTMLSGYANNGDVEECKRLFEEMPE 256 (589)
Q Consensus 180 g~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 256 (589)
|++++|+..|...... +......++..+........+...++.-. ++...+..+.. |......+....-+....+
T Consensus 208 g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~-~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 285 (615)
T TIGR00990 208 GKYADALLDLTASCIIDGFRNEQSAQAVERLLKKFAESKAKEILETKP-ENLPSVTFVGN-YLQSFRPKPRPAGLEDSNE 285 (615)
T ss_pred CCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCC-CCCCCHHHHHH-HHHHccCCcchhhhhcccc
Confidence 7777777666543221 11111111111111111223333333211 22222222222 2221122222222222111
Q ss_pred CC---chhHHHHHHH---HHhCCChHHHHHHHHHHHHcCCCCCc-HHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC
Q 007808 257 RN---VFSWNGLIGG---YANNGLFFEVLDAFKRMLTEGRVFPN-DATIVTVLSACARLGALDFSKWVHVYAEYNGYQGN 329 (589)
Q Consensus 257 ~~---~~~~~~l~~~---~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 329 (589)
-+ ...+..+... ....+++++|++.|+..++.+...|+ ...+..+...+...|++++|...++...+.. +..
T Consensus 286 ~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~-P~~ 364 (615)
T TIGR00990 286 LDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELD-PRV 364 (615)
T ss_pred cccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCc
Confidence 11 1111111111 12347899999999999886523444 4467777778889999999999999998864 445
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHhhCCC---CCcchHHHHHHHHHhCCChHHHHHHHHHHHHCCCCC-CHhHHHHHHHH
Q 007808 330 VCVGNALIDMYAKCGIIENAVDVFNSMDT---KDLITWNTIISGLAMHGRGAGALSLFHEMKNAGEMP-DGITFIGILCA 405 (589)
Q Consensus 330 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p-~~~~~~~l~~~ 405 (589)
...+..+...+...|++++|...|+++.+ .+...|..+...+...|++++|+..|++..+. .| +...+..+...
T Consensus 365 ~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l--~P~~~~~~~~la~~ 442 (615)
T TIGR00990 365 TQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDL--DPDFIFSHIQLGVT 442 (615)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CccCHHHHHHHHHH
Confidence 66788889999999999999999997753 35678999999999999999999999999985 45 56677788889
Q ss_pred HhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHhhC-CCCCCH-H-------HHHHHHHHHhc
Q 007808 406 CTHMGLVEEGLSYFQSMAMDYSIVPQIEHYGCMVDLLARAGRLAEAVDFVKRM-PIEADA-V-------IWANLLGSCRV 476 (589)
Q Consensus 406 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~-~-------~~~~l~~~~~~ 476 (589)
+.+.|++++|+..+++..+. .+.+...++.+..++...|++++|++.|++. .+.|+. . .++.....+..
T Consensus 443 ~~~~g~~~eA~~~~~~al~~--~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~ 520 (615)
T TIGR00990 443 QYKEGSIASSMATFRRCKKN--FPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQW 520 (615)
T ss_pred HHHCCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHH
Confidence 99999999999999998753 3345778899999999999999999999986 444431 1 11222223445
Q ss_pred CCCHHHHHHHHHHHHccCCCCCcchHHHHHHHhhcCChHHHHHHHHHhh
Q 007808 477 YKNVELAELALERLTELEPKNPANFVMLSNIYGDLGRWKDVARIKVAMR 525 (589)
Q Consensus 477 ~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 525 (589)
.|++++|.+.++++++++|++..++..++.++.+.|++++|++.+++..
T Consensus 521 ~~~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~ 569 (615)
T TIGR00990 521 KQDFIEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDEALKLFERAA 569 (615)
T ss_pred hhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 7999999999999999999998899999999999999999999999985
No 16
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.90 E-value=2.5e-20 Score=194.00 Aligned_cols=384 Identities=10% Similarity=-0.072 Sum_probs=239.9
Q ss_pred hHHHHHHHHHhCCCHHHHHHHHHhCCC--CChhHHHHHHHHHhcCCChHHHHHHhcccCC--C-ChhhHHHHHHHHHhcC
Q 007808 168 VWTSMINGYISCGDIVSARCLFELAPE--RDVILWNTIVSGYIDVRNMIEARKLFDQMPK--K-DVISWNTMLSGYANNG 242 (589)
Q Consensus 168 ~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~-~~~~~~~l~~~~~~~~ 242 (589)
.+......+.+.|++++|+..|+.... |+...|..+..+|.+.|++++|+..++...+ | +...+..+..+|...|
T Consensus 129 ~~k~~G~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~a~a~~~lg 208 (615)
T TIGR00990 129 KLKEKGNKAYRNKDFNKAIKLYSKAIECKPDPVYYSNRAACHNALGDWEKVVEDTTAALELDPDYSKALNRRANAYDGLG 208 (615)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcC
Confidence 455677888888999999999887653 4667788888888888999999888888775 3 4567777888888889
Q ss_pred CHHHHHHHHhhCCCCC---chhHHHHHHHHHhCCChHHHHHHHHHHHHcCC-CCCcHHHHHHHHH---------------
Q 007808 243 DVEECKRLFEEMPERN---VFSWNGLIGGYANNGLFFEVLDAFKRMLTEGR-VFPNDATIVTVLS--------------- 303 (589)
Q Consensus 243 ~~~~A~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~p~~~~~~~l~~--------------- 303 (589)
++++|...|..+...+ ......++..+.. ..+........+..+ ..|..........
T Consensus 209 ~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~----~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 284 (615)
T TIGR00990 209 KYADALLDLTASCIIDGFRNEQSAQAVERLLK----KFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSN 284 (615)
T ss_pred CHHHHHHHHHHHHHhCCCccHHHHHHHHHHHH----HHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhccc
Confidence 9988888776554311 1111111111111 122222222222110 0011111100000
Q ss_pred ------------H------HHhcCChhHHHHHHHHHHHcC--CCCChhHHHHHHHHHHhcCChHHHHHHHhhCCC--C-C
Q 007808 304 ------------A------CARLGALDFSKWVHVYAEYNG--YQGNVCVGNALIDMYAKCGIIENAVDVFNSMDT--K-D 360 (589)
Q Consensus 304 ------------~------~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~ 360 (589)
. ....+++++|...++.+.+.+ .+.....+..+...+...|++++|+..|++..+ | +
T Consensus 285 ~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~~ 364 (615)
T TIGR00990 285 ELDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDPRV 364 (615)
T ss_pred ccccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCc
Confidence 0 011245666777777666654 123344566666667777777777777776653 2 2
Q ss_pred cchHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHH
Q 007808 361 LITWNTIISGLAMHGRGAGALSLFHEMKNAGEMPDGITFIGILCACTHMGLVEEGLSYFQSMAMDYSIVPQIEHYGCMVD 440 (589)
Q Consensus 361 ~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~ 440 (589)
...|..+...+...|++++|+..|+++.+.. +.+...+..+...+...|++++|...|++.+.. .+.+...+..+..
T Consensus 365 ~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l--~P~~~~~~~~la~ 441 (615)
T TIGR00990 365 TQSYIKRASMNLELGDPDKAEEDFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDL--DPDFIFSHIQLGV 441 (615)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CccCHHHHHHHHH
Confidence 3456666666777777777777777776642 224556666666777777777777777776531 2223555666667
Q ss_pred HHHhcCCHHHHHHHHhhC-CCCC-CHHHHHHHHHHHhcCCCHHHHHHHHHHHHccCCCCCcchHHH-------HHHHhhc
Q 007808 441 LLARAGRLAEAVDFVKRM-PIEA-DAVIWANLLGSCRVYKNVELAELALERLTELEPKNPANFVML-------SNIYGDL 511 (589)
Q Consensus 441 ~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l-------~~~~~~~ 511 (589)
++.+.|++++|+..+++. ...| +...++.+...+...|++++|++.|++++++.|.+...+..+ +..+...
T Consensus 442 ~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~ 521 (615)
T TIGR00990 442 TQYKEGSIASSMATFRRCKKNFPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWK 521 (615)
T ss_pred HHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHh
Confidence 777777777777777765 3334 355666666777777777777777777777776543332221 1122335
Q ss_pred CChHHHHHHHHHhhhCCCccCCccceeeeCCeeeeeccccCCCchHHHHHHHHHHHHcccCCCCcchHhhh
Q 007808 512 GRWKDVARIKVAMRDTGFKKLPGCSSIEVNEVVMLGCLSRELDRKSIVRAEANMIKLLPQNNHPLTFIVVI 582 (589)
Q Consensus 512 g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 582 (589)
|++++|++++++.. +++|++..++..+|+++...|+.++|+.+....
T Consensus 522 ~~~~eA~~~~~kAl------------------------~l~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A 568 (615)
T TIGR00990 522 QDFIEAENLCEKAL------------------------IIDPECDIAVATMAQLLLQQGDVDEALKLFERA 568 (615)
T ss_pred hhHHHHHHHHHHHH------------------------hcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 77777777777654 788999999999999999999999998876543
No 17
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.90 E-value=9e-20 Score=180.61 Aligned_cols=501 Identities=13% Similarity=0.052 Sum_probs=319.7
Q ss_pred HHHHccCChhHHHHHhhcCCCCCcccHHHHHHH---HHcC---CChhHHHHHHHHhhhCCCCCCcccHHHHHHHHhccCC
Q 007808 42 TACAQLKQMTYARKMFDKITDQNVVSWNAMFNG---YAQN---EFHRTVVVLFTQMKKLDAMPNCFTFPIVLKSCVKINA 115 (589)
Q Consensus 42 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ll~~---~~~~---~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~ 115 (589)
..+.+.|+.+.|+..|+...+.|+..-++++.. -... ..+..+..++...-... .-|++..+.|.+-+.-.|+
T Consensus 207 ~Cf~kl~~~~~a~~a~~ralqLdp~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n-~~nP~~l~~LAn~fyfK~d 285 (1018)
T KOG2002|consen 207 HCFWKLGMSEKALLAFERALQLDPTCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKEN-NENPVALNHLANHFYFKKD 285 (1018)
T ss_pred hHHHhccchhhHHHHHHHHHhcChhhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhc-CCCcHHHHHHHHHHhhccc
Confidence 445566666666666666555333222222211 1111 23344444444443332 3456667777777777777
Q ss_pred hHHHHHHHHHHHHhCCC--CchHHHhHHHHHHHcCCChHHHHHHHccCCC--CC--eehHHHHHHHHHhCCCHHHHHHHH
Q 007808 116 LREGEELHCLVLKNGFR--ANIFVGTALIELYSTGKAIEAAYKVFGEMDE--RN--VVVWTSMINGYISCGDIVSARCLF 189 (589)
Q Consensus 116 ~~~a~~~~~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~--~~~~~~l~~~~~~~g~~~~a~~~~ 189 (589)
++.+..+...++..... .-...|--+.++|-..|++++|...|.+... ++ +..+-.+...|.+.|+++.+...|
T Consensus 286 y~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~f 365 (1018)
T KOG2002|consen 286 YERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCF 365 (1018)
T ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHH
Confidence 77777777777664311 1123355567777777888888777766654 22 334556777777788887777777
Q ss_pred HhCCCC---ChhHHHHHHHHHhcCC----ChHHHHHHhcccCC---CChhhHHHHHHHHHhcCCHHHHHHHHhhCC----
Q 007808 190 ELAPER---DVILWNTIVSGYIDVR----NMIEARKLFDQMPK---KDVISWNTMLSGYANNGDVEECKRLFEEMP---- 255 (589)
Q Consensus 190 ~~~~~~---~~~~~~~l~~~~~~~g----~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---- 255 (589)
+...+. +..+...+...|+..+ ..+.|..++.+..+ .|...|-.+...+...+-+.. +..|..+.
T Consensus 366 Ekv~k~~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~~~d~~a~l~laql~e~~d~~~s-L~~~~~A~d~L~ 444 (1018)
T KOG2002|consen 366 EKVLKQLPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQTPVDSEAWLELAQLLEQTDPWAS-LDAYGNALDILE 444 (1018)
T ss_pred HHHHHhCcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHhcChHHH-HHHHHHHHHHHH
Confidence 766532 4456666666666554 45666666666655 345566666665554443332 44443332
Q ss_pred ----CCCchhHHHHHHHHHhCCChHHHHHHHHHHHHcCC--CCCcH------HHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 007808 256 ----ERNVFSWNGLIGGYANNGLFFEVLDAFKRMLTEGR--VFPND------ATIVTVLSACARLGALDFSKWVHVYAEY 323 (589)
Q Consensus 256 ----~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~~p~~------~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 323 (589)
+..+...|.+...+...|++.+|...|......-. ..+|. .+-..+....-..++++.|.+.|..+.+
T Consensus 445 ~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilk 524 (1018)
T KOG2002|consen 445 SKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILK 524 (1018)
T ss_pred HcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHH
Confidence 24556677777788888888888888877765410 12222 2333455566667788888888888877
Q ss_pred cCCCCChhHHHHHHHHHHhcCChHHHHHHHhhCC---CCCcchHHHHHHHHHhCCChHHHHHHHHHHHHC-CCCCCHhHH
Q 007808 324 NGYQGNVCVGNALIDMYAKCGIIENAVDVFNSMD---TKDLITWNTIISGLAMHGRGAGALSLFHEMKNA-GEMPDGITF 399 (589)
Q Consensus 324 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~-~~~p~~~~~ 399 (589)
.. |.-+..|-.++...-..+...+|...++... ..++..+..+...+....++..|.+-|....+. ...+|..+.
T Consensus 525 eh-p~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~Ysl 603 (1018)
T KOG2002|consen 525 EH-PGYIDAYLRLGCMARDKNNLYEASLLLKDALNIDSSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSL 603 (1018)
T ss_pred HC-chhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcccCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHH
Confidence 63 3334445555434444567778888887665 346777777777888888888887766665542 123566666
Q ss_pred HHHHHHHhcc------------CcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHhhCC--CCCCHH
Q 007808 400 IGILCACTHM------------GLVEEGLSYFQSMAMDYSIVPQIEHYGCMVDLLARAGRLAEAVDFVKRMP--IEADAV 465 (589)
Q Consensus 400 ~~l~~~~~~~------------g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~ 465 (589)
..|.+.|.+. +..++|+++|.++++ ..+.|...-|.+.-.++..|++.+|..+|.+.. ......
T Consensus 604 iaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~--~dpkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~~~~d 681 (1018)
T KOG2002|consen 604 IALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLR--NDPKNMYAANGIGIVLAEKGRFSEARDIFSQVREATSDFED 681 (1018)
T ss_pred HHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHh--cCcchhhhccchhhhhhhccCchHHHHHHHHHHHHHhhCCc
Confidence 6666654432 346778888887765 334566677778888888888888888888873 222445
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHcc--CCCCCcchHHHHHHHhhcCChHHHHHHHHHhhhCCCccCCccceeeeCCe
Q 007808 466 IWANLLGSCRVYKNVELAELALERLTEL--EPKNPANFVMLSNIYGDLGRWKDVARIKVAMRDTGFKKLPGCSSIEVNEV 543 (589)
Q Consensus 466 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 543 (589)
+|-.+.++|..+|++..|+++|+.+.+. ..+++.+...|++++.+.|++.+|.+.+....
T Consensus 682 v~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~------------------ 743 (1018)
T KOG2002|consen 682 VWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKAR------------------ 743 (1018)
T ss_pred eeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHH------------------
Confidence 6778888888888888898888888873 23567788888888888888888888877665
Q ss_pred eeeeccccCCCchHHHHHHHHHHHHccc
Q 007808 544 VMLGCLSRELDRKSIVRAEANMIKLLPQ 571 (589)
Q Consensus 544 ~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 571 (589)
.+.|.++....+++-+.++++.
T Consensus 744 ------~~~p~~~~v~FN~a~v~kkla~ 765 (1018)
T KOG2002|consen 744 ------HLAPSNTSVKFNLALVLKKLAE 765 (1018)
T ss_pred ------HhCCccchHHhHHHHHHHHHHH
Confidence 6778888888888887776653
No 18
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.89 E-value=3.6e-20 Score=191.91 Aligned_cols=379 Identities=8% Similarity=-0.053 Sum_probs=290.2
Q ss_pred HHHhCCCHHHHHHHHHhCCCC------ChhHHHHHHHHHhcCCChHHHHHHhcccCC---CChhhHHHHHHHHHhcCCHH
Q 007808 175 GYISCGDIVSARCLFELAPER------DVILWNTIVSGYIDVRNMIEARKLFDQMPK---KDVISWNTMLSGYANNGDVE 245 (589)
Q Consensus 175 ~~~~~g~~~~a~~~~~~~~~~------~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~ 245 (589)
.+.++.+|+.-.-+|....+. +......++..+.+.|+.++|..+++.... .+...+..++......|+++
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~~~~~l~~l~~~~l~~g~~~ 93 (656)
T PRK15174 14 TLLKQEDWEGLCLYFSQHPEKVRDSAGNEQNIILFAIACLRKDETDVGLTLLSDRVLTAKNGRDLLRRWVISPLASSQPD 93 (656)
T ss_pred hhhhhhchhhHhHHhhcccHhhhhhcccccCHHHHHHHHHhcCCcchhHHHhHHHHHhCCCchhHHHHHhhhHhhcCCHH
Confidence 345677777776666655432 233456677788899999999999988875 34455666677778899999
Q ss_pred HHHHHHhhCCC--C-CchhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 007808 246 ECKRLFEEMPE--R-NVFSWNGLIGGYANNGLFFEVLDAFKRMLTEGRVFPNDATIVTVLSACARLGALDFSKWVHVYAE 322 (589)
Q Consensus 246 ~A~~~~~~~~~--~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 322 (589)
+|...|+++.+ | +...+..+...+...|++++|+..++++.+.. +.+...+..+...+...|++++|...+..+.
T Consensus 94 ~A~~~l~~~l~~~P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~--P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~ 171 (656)
T PRK15174 94 AVLQVVNKLLAVNVCQPEDVLLVASVLLKSKQYATVADLAEQAWLAF--SGNSQIFALHLRTLVLMDKELQAISLARTQA 171 (656)
T ss_pred HHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHCCChHHHHHHHHHHH
Confidence 99999999876 3 45678888899999999999999999999854 3446677888889999999999999999887
Q ss_pred HcCCCCChhHHHHHHHHHHhcCChHHHHHHHhhCCCC----CcchHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHhH
Q 007808 323 YNGYQGNVCVGNALIDMYAKCGIIENAVDVFNSMDTK----DLITWNTIISGLAMHGRGAGALSLFHEMKNAGEMPDGIT 398 (589)
Q Consensus 323 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~ 398 (589)
.... .+...+..+ ..+...|++++|...++.+.+. +...+..+..++...|++++|+..++++.+.. +.+...
T Consensus 172 ~~~P-~~~~a~~~~-~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~-p~~~~~ 248 (656)
T PRK15174 172 QEVP-PRGDMIATC-LSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARG-LDGAAL 248 (656)
T ss_pred HhCC-CCHHHHHHH-HHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHH
Confidence 7653 333344333 3478899999999999987643 23344556778889999999999999999853 335667
Q ss_pred HHHHHHHHhccCcHHH----HHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHhhC-CCCCC-HHHHHHHHH
Q 007808 399 FIGILCACTHMGLVEE----GLSYFQSMAMDYSIVPQIEHYGCMVDLLARAGRLAEAVDFVKRM-PIEAD-AVIWANLLG 472 (589)
Q Consensus 399 ~~~l~~~~~~~g~~~~----A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~ 472 (589)
+..+...+...|++++ |...++++... .+.+...+..+...+.+.|++++|+..++++ ...|+ ...+..+..
T Consensus 249 ~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l--~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~ 326 (656)
T PRK15174 249 RRSLGLAYYQSGRSREAKLQAAEHWRHALQF--NSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYAR 326 (656)
T ss_pred HHHHHHHHHHcCCchhhHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 7788889999999986 79999988752 2334678889999999999999999999988 44564 556667778
Q ss_pred HHhcCCCHHHHHHHHHHHHccCCCCCcchHHHHHHHhhcCChHHHHHHHHHhhhCCCccCCccceeeeCCeeeeeccccC
Q 007808 473 SCRVYKNVELAELALERLTELEPKNPANFVMLSNIYGDLGRWKDVARIKVAMRDTGFKKLPGCSSIEVNEVVMLGCLSRE 552 (589)
Q Consensus 473 ~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 552 (589)
++.+.|++++|...|+++++.+|+++..+..++.++...|++++|++.++++.+.... ...
T Consensus 327 ~l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~P~-------------------~~~ 387 (656)
T PRK15174 327 ALRQVGQYTAASDEFVQLAREKGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQARAS-------------------HLP 387 (656)
T ss_pred HHHHCCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhChh-------------------hch
Confidence 8999999999999999999999997777777889999999999999999998522211 234
Q ss_pred CCchHHHHHHHHHHHHcccCCCCcchH
Q 007808 553 LDRKSIVRAEANMIKLLPQNNHPLTFI 579 (589)
Q Consensus 553 p~~~~~~~~l~~~~~~~~~~~~~~~~~ 579 (589)
++..++...+...+...+..++...+.
T Consensus 388 ~~~~ea~~~~~~~~~~~~~~~~~~~W~ 414 (656)
T PRK15174 388 QSFEEGLLALDGQISAVNLPPERLDWA 414 (656)
T ss_pred hhHHHHHHHHHHHHHhcCCccchhhHH
Confidence 444556666777776665554433443
No 19
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.88 E-value=5.7e-19 Score=187.13 Aligned_cols=156 Identities=12% Similarity=0.069 Sum_probs=111.3
Q ss_pred HHHHHhCCChHHHHHHHHHHHHCCCCCC-----HhHHHHHHHHHhccCcHHHHHHHHHHhHHhcC----------CCCC-
Q 007808 368 ISGLAMHGRGAGALSLFHEMKNAGEMPD-----GITFIGILCACTHMGLVEEGLSYFQSMAMDYS----------IVPQ- 431 (589)
Q Consensus 368 ~~~~~~~~~~~~A~~~~~~m~~~~~~p~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~----------~~~~- 431 (589)
..+|...|++++|+..|+++.+. .|. ......+..++...|++++|.++++.+..... -.|+
T Consensus 279 a~~yl~~g~~e~A~~~l~~~l~~--~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~ 356 (765)
T PRK10049 279 ASAYLKLHQPEKAQSILTELFYH--PETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPND 356 (765)
T ss_pred HHHHHhcCCcHHHHHHHHHHhhc--CCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCc
Confidence 44555666666666666665542 221 12334444455666666666666666543210 1233
Q ss_pred --hHHHHHHHHHHHhcCCHHHHHHHHhhC-CCCC-CHHHHHHHHHHHhcCCCHHHHHHHHHHHHccCCCCCcchHHHHHH
Q 007808 432 --IEHYGCMVDLLARAGRLAEAVDFVKRM-PIEA-DAVIWANLLGSCRVYKNVELAELALERLTELEPKNPANFVMLSNI 507 (589)
Q Consensus 432 --~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 507 (589)
...+..++..+...|++++|++.++++ ...| +...+..+...+...|++++|++.++++++++|+++..+..++..
T Consensus 357 ~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~ 436 (765)
T PRK10049 357 DWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPGNQGLRIDYASVLQARGWPRAAENELKKAEVLEPRNINLEVEQAWT 436 (765)
T ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHH
Confidence 234556778888999999999999987 3344 566777788888999999999999999999999999999999999
Q ss_pred HhhcCChHHHHHHHHHhh
Q 007808 508 YGDLGRWKDVARIKVAMR 525 (589)
Q Consensus 508 ~~~~g~~~~A~~~~~~~~ 525 (589)
+.+.|++++|+++++++.
T Consensus 437 al~~~~~~~A~~~~~~ll 454 (765)
T PRK10049 437 ALDLQEWRQMDVLTDDVV 454 (765)
T ss_pred HHHhCCHHHHHHHHHHHH
Confidence 999999999999999986
No 20
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.88 E-value=2.6e-20 Score=184.30 Aligned_cols=291 Identities=15% Similarity=0.100 Sum_probs=212.0
Q ss_pred HHHhcCCHHHHHHHHhhCCC--C-CchhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCc---HHHHHHHHHHHHhcCC
Q 007808 237 GYANNGDVEECKRLFEEMPE--R-NVFSWNGLIGGYANNGLFFEVLDAFKRMLTEGRVFPN---DATIVTVLSACARLGA 310 (589)
Q Consensus 237 ~~~~~~~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~---~~~~~~l~~~~~~~~~ 310 (589)
.+...|++++|...|+++.+ | +..++..+...+...|++++|+.+++.+...+ ..++ ...+..+...+.+.|+
T Consensus 44 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~~~~~La~~~~~~g~ 122 (389)
T PRK11788 44 NFLLNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRP-DLTREQRLLALQELGQDYLKAGL 122 (389)
T ss_pred HHHhcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCC-CCCHHHHHHHHHHHHHHHHHCCC
Confidence 34455666666666666654 2 33456666666677777777777777666543 1111 2345566666677777
Q ss_pred hhHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHhhCCCCCc--------chHHHHHHHHHhCCChHHHHH
Q 007808 311 LDFSKWVHVYAEYNGYQGNVCVGNALIDMYAKCGIIENAVDVFNSMDTKDL--------ITWNTIISGLAMHGRGAGALS 382 (589)
Q Consensus 311 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--------~~~~~l~~~~~~~~~~~~A~~ 382 (589)
++.|..++..+.+.. +.+..++..++..+.+.|++++|.+.++.+.+.++ ..+..++..+.+.|++++|..
T Consensus 123 ~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~ 201 (389)
T PRK11788 123 LDRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARA 201 (389)
T ss_pred HHHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHH
Confidence 777777777766542 34556666777777777777777777776653211 134567777888999999999
Q ss_pred HHHHHHHCCCCCCHhHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC--hHHHHHHHHHHHhcCCHHHHHHHHhhC-C
Q 007808 383 LFHEMKNAGEMPDGITFIGILCACTHMGLVEEGLSYFQSMAMDYSIVPQ--IEHYGCMVDLLARAGRLAEAVDFVKRM-P 459 (589)
Q Consensus 383 ~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~-~ 459 (589)
.|+++.+.. +.+...+..+...+.+.|++++|.++++++... .|+ ...++.++.+|.+.|++++|...++++ .
T Consensus 202 ~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~---~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~ 277 (389)
T PRK11788 202 LLKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQ---DPEYLSEVLPKLMECYQALGDEAEGLEFLRRALE 277 (389)
T ss_pred HHHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH---ChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 999998753 234567778888999999999999999998753 243 456788899999999999999999988 4
Q ss_pred CCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHccCCCCCcchHHHHHHHhh---cCChHHHHHHHHHhhhCCCccCCc
Q 007808 460 IEADAVIWANLLGSCRVYKNVELAELALERLTELEPKNPANFVMLSNIYGD---LGRWKDVARIKVAMRDTGFKKLPG 534 (589)
Q Consensus 460 ~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~---~g~~~~A~~~~~~~~~~~~~~~~~ 534 (589)
..|+...+..++..+.+.|++++|...++++++..|+++ .+..+...+.. .|+.++++.++++|.+++++++|.
T Consensus 278 ~~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~-~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~ 354 (389)
T PRK11788 278 EYPGADLLLALAQLLEEQEGPEAAQALLREQLRRHPSLR-GFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKPR 354 (389)
T ss_pred hCCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHH-HHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCCCC
Confidence 577777778888999999999999999999999999865 45555555543 569999999999999999999884
No 21
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.88 E-value=7.6e-19 Score=182.13 Aligned_cols=363 Identities=10% Similarity=-0.057 Sum_probs=288.8
Q ss_pred HHcCCChHHHHHHHccCCC------CCeehHHHHHHHHHhCCCHHHHHHHHHhCCC---CChhHHHHHHHHHhcCCChHH
Q 007808 145 YSTGKAIEAAYKVFGEMDE------RNVVVWTSMINGYISCGDIVSARCLFELAPE---RDVILWNTIVSGYIDVRNMIE 215 (589)
Q Consensus 145 ~~~~g~~~~A~~~~~~~~~------~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~ 215 (589)
+.+..+++.---.|..-.+ .+..-...++..+.+.|++++|..+++.... .+...+..++.+....|++++
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~~~~~l~~l~~~~l~~g~~~~ 94 (656)
T PRK15174 15 LLKQEDWEGLCLYFSQHPEKVRDSAGNEQNIILFAIACLRKDETDVGLTLLSDRVLTAKNGRDLLRRWVISPLASSQPDA 94 (656)
T ss_pred hhhhhchhhHhHHhhcccHhhhhhcccccCHHHHHHHHHhcCCcchhHHHhHHHHHhCCCchhHHHHHhhhHhhcCCHHH
Confidence 3456677766666666554 1333456678889999999999999988753 256677778888889999999
Q ss_pred HHHHhcccCC--C-ChhhHHHHHHHHHhcCCHHHHHHHHhhCCC--C-CchhHHHHHHHHHhCCChHHHHHHHHHHHHcC
Q 007808 216 ARKLFDQMPK--K-DVISWNTMLSGYANNGDVEECKRLFEEMPE--R-NVFSWNGLIGGYANNGLFFEVLDAFKRMLTEG 289 (589)
Q Consensus 216 a~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 289 (589)
|...++++.. | +...+..+...+...|++++|...|+++.+ | +...+..+...+...|++++|...++.+....
T Consensus 95 A~~~l~~~l~~~P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~ 174 (656)
T PRK15174 95 VLQVVNKLLAVNVCQPEDVLLVASVLLKSKQYATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISLARTQAQEV 174 (656)
T ss_pred HHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhC
Confidence 9999999975 3 556788888999999999999999999876 3 46678889999999999999999999988765
Q ss_pred CCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHhhCCC---CCcchHHH
Q 007808 290 RVFPNDATIVTVLSACARLGALDFSKWVHVYAEYNGYQGNVCVGNALIDMYAKCGIIENAVDVFNSMDT---KDLITWNT 366 (589)
Q Consensus 290 ~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~ 366 (589)
+.+...+..+ ..+...|++++|...++.+.+....++......+...+...|++++|...|++... .+...+..
T Consensus 175 --P~~~~a~~~~-~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~~~~~~~~ 251 (656)
T PRK15174 175 --PPRGDMIATC-LSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLDGAALRRS 251 (656)
T ss_pred --CCCHHHHHHH-HHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 2223333333 45788999999999999988765444455556667888999999999999998763 35667888
Q ss_pred HHHHHHhCCChHH----HHHHHHHHHHCCCCC-CHhHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHH
Q 007808 367 IISGLAMHGRGAG----ALSLFHEMKNAGEMP-DGITFIGILCACTHMGLVEEGLSYFQSMAMDYSIVPQIEHYGCMVDL 441 (589)
Q Consensus 367 l~~~~~~~~~~~~----A~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~ 441 (589)
+...+...|++++ |+..|++..+. .| +...+..+...+...|++++|...++++... .+.+...+..+..+
T Consensus 252 Lg~~l~~~G~~~eA~~~A~~~~~~Al~l--~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l--~P~~~~a~~~La~~ 327 (656)
T PRK15174 252 LGLAYYQSGRSREAKLQAAEHWRHALQF--NSDNVRIVTLYADALIRTGQNEKAIPLLQQSLAT--HPDLPYVRAMYARA 327 (656)
T ss_pred HHHHHHHcCCchhhHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHH
Confidence 9999999999986 89999999984 45 5668889999999999999999999999753 23345677788999
Q ss_pred HHhcCCHHHHHHHHhhC-CCCCCHHHH-HHHHHHHhcCCCHHHHHHHHHHHHccCCCCCcchHHHHHHHhhcCChHHHHH
Q 007808 442 LARAGRLAEAVDFVKRM-PIEADAVIW-ANLLGSCRVYKNVELAELALERLTELEPKNPANFVMLSNIYGDLGRWKDVAR 519 (589)
Q Consensus 442 ~~~~g~~~~A~~~~~~~-~~~p~~~~~-~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 519 (589)
|.+.|++++|++.++++ ...|+...+ ..+..++...|+.++|...|+++++.+|++. ...+++|..
T Consensus 328 l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~P~~~------------~~~~~ea~~ 395 (656)
T PRK15174 328 LRQVGQYTAASDEFVQLAREKGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQARASHL------------PQSFEEGLL 395 (656)
T ss_pred HHHCCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhChhhc------------hhhHHHHHH
Confidence 99999999999999988 456765443 3345778999999999999999999999864 345667777
Q ss_pred HHHHhhh
Q 007808 520 IKVAMRD 526 (589)
Q Consensus 520 ~~~~~~~ 526 (589)
.+.+..+
T Consensus 396 ~~~~~~~ 402 (656)
T PRK15174 396 ALDGQIS 402 (656)
T ss_pred HHHHHHH
Confidence 7776653
No 22
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.87 E-value=1.6e-18 Score=171.81 Aligned_cols=469 Identities=15% Similarity=0.066 Sum_probs=298.4
Q ss_pred hhHHHHHhhcCCCC---CcccHHHHHHHHHcCCChhHHHHHHHHhhhCC--CCCCcccHHHHHHHHhccCChHHHHHHHH
Q 007808 50 MTYARKMFDKITDQ---NVVSWNAMFNGYAQNEFHRTVVVLFTQMKKLD--AMPNCFTFPIVLKSCVKINALREGEELHC 124 (589)
Q Consensus 50 ~~~A~~~~~~~~~~---~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~--~~p~~~~~~~ll~~~~~~~~~~~a~~~~~ 124 (589)
.+.|...|....+. |+-..-.-.......|++..|+.+|....... .+||.. ..+..++.+.++.+.|...|+
T Consensus 146 ~~~A~a~F~~Vl~~sp~Nil~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD~r--Igig~Cf~kl~~~~~a~~a~~ 223 (1018)
T KOG2002|consen 146 MDDADAQFHFVLKQSPDNILALLGKARIAYNKKDYRGALKYYKKALRINPACKADVR--IGIGHCFWKLGMSEKALLAFE 223 (1018)
T ss_pred HHHHHHHHHHHHhhCCcchHHHHHHHHHHhccccHHHHHHHHHHHHhcCcccCCCcc--chhhhHHHhccchhhHHHHHH
Confidence 47777777766542 33222222233456688888888888865442 334433 233355567788888888888
Q ss_pred HHHHhCCCCchHHHhHHHHHHHcCC---ChHHHHHHHccCC---CCCeehHHHHHHHHHhCCCHHHHHHHHHhCCCCC--
Q 007808 125 LVLKNGFRANIFVGTALIELYSTGK---AIEAAYKVFGEMD---ERNVVVWTSMINGYISCGDIVSARCLFELAPERD-- 196 (589)
Q Consensus 125 ~~~~~~~~~~~~~~~~li~~~~~~g---~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-- 196 (589)
..++.++ .++.++-.|.-.-.... .+..+...+...- ..++++.+.|.+-|...|+++.+..+...+....
T Consensus 224 ralqLdp-~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~ 302 (1018)
T KOG2002|consen 224 RALQLDP-TCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKENNENPVALNHLANHFYFKKDYERVWHLAEHAIKNTEN 302 (1018)
T ss_pred HHHhcCh-hhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhh
Confidence 8888653 23334433333222222 3445555555443 2577888888888888888888888887765432
Q ss_pred ----hhHHHHHHHHHhcCCChHHHHHHhcccCC--CCh--hhHHHHHHHHHhcCCHHHHHHHHhhCCC--C-CchhHHHH
Q 007808 197 ----VILWNTIVSGYIDVRNMIEARKLFDQMPK--KDV--ISWNTMLSGYANNGDVEECKRLFEEMPE--R-NVFSWNGL 265 (589)
Q Consensus 197 ----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~--~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~-~~~~~~~l 265 (589)
...|..+.++|-..|++++|.+.|.+..+ ++. ..+..+...|.+.|+++.+...|+.+.+ | +..+...|
T Consensus 303 ~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iL 382 (1018)
T KOG2002|consen 303 KSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKIL 382 (1018)
T ss_pred hHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHH
Confidence 24577888888888888888888887775 333 3455677888888888888888888775 3 45566666
Q ss_pred HHHHHhCC----ChHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHH----HcCCCCChhHHHHHH
Q 007808 266 IGGYANNG----LFFEVLDAFKRMLTEGRVFPNDATIVTVLSACARLGALDFSKWVHVYAE----YNGYQGNVCVGNALI 337 (589)
Q Consensus 266 ~~~~~~~g----~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~----~~~~~~~~~~~~~l~ 337 (589)
...|...+ ..++|..++.+..+.- +.|...|..+...+.... +..+...|..+. ..+.++.+...|.+.
T Consensus 383 G~Lya~~~~~~~~~d~a~~~l~K~~~~~--~~d~~a~l~laql~e~~d-~~~sL~~~~~A~d~L~~~~~~ip~E~LNNva 459 (1018)
T KOG2002|consen 383 GCLYAHSAKKQEKRDKASNVLGKVLEQT--PVDSEAWLELAQLLEQTD-PWASLDAYGNALDILESKGKQIPPEVLNNVA 459 (1018)
T ss_pred HhHHHhhhhhhHHHHHHHHHHHHHHhcc--cccHHHHHHHHHHHHhcC-hHHHHHHHHHHHHHHHHcCCCCCHHHHHhHH
Confidence 66676664 4566777777776653 445566666665555443 333355554433 445557777888888
Q ss_pred HHHHhcCChHHHHHHHhhCCCC-------Cc------chHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHh-HHHHHH
Q 007808 338 DMYAKCGIIENAVDVFNSMDTK-------DL------ITWNTIISGLAMHGRGAGALSLFHEMKNAGEMPDGI-TFIGIL 403 (589)
Q Consensus 338 ~~~~~~g~~~~A~~~~~~~~~~-------~~------~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~-~~~~l~ 403 (589)
..+...|.+.+|...|+..... +. .+-..+...+-..++++.|.+.|....+. .|+-. .|.-++
T Consensus 460 slhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilke--hp~YId~ylRl~ 537 (1018)
T KOG2002|consen 460 SLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKE--HPGYIDAYLRLG 537 (1018)
T ss_pred HHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHH--CchhHHHHHHhh
Confidence 8888888888888888765421 22 12233445555667788888888887774 45432 343443
Q ss_pred HHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHhhC----CCCCCHHHHHHHHHHHh----
Q 007808 404 CACTHMGLVEEGLSYFQSMAMDYSIVPQIEHYGCMVDLLARAGRLAEAVDFVKRM----PIEADAVIWANLLGSCR---- 475 (589)
Q Consensus 404 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~p~~~~~~~l~~~~~---- 475 (589)
......+...+|...++.... ....++..+..+.+.+.+...+..|.+-|... ...+|..+.-+|.+.|.
T Consensus 538 ~ma~~k~~~~ea~~~lk~~l~--~d~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~ 615 (1018)
T KOG2002|consen 538 CMARDKNNLYEASLLLKDALN--IDSSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALH 615 (1018)
T ss_pred HHHHhccCcHHHHHHHHHHHh--cccCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhc
Confidence 233344667777777777765 33444555565667777777777776643333 23455555555554432
Q ss_pred --------cCCCHHHHHHHHHHHHccCCCCCcchHHHHHHHhhcCChHHHHHHHHHhhhCC
Q 007808 476 --------VYKNVELAELALERLTELEPKNPANFVMLSNIYGDLGRWKDVARIKVAMRDTG 528 (589)
Q Consensus 476 --------~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 528 (589)
..+..++|++.|.++++.+|.|..+-+.++-++...|++.+|..+|.++.+..
T Consensus 616 ~~~rn~ek~kk~~~KAlq~y~kvL~~dpkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~ 676 (1018)
T KOG2002|consen 616 NPSRNPEKEKKHQEKALQLYGKVLRNDPKNMYAANGIGIVLAEKGRFSEARDIFSQVREAT 676 (1018)
T ss_pred ccccChHHHHHHHHHHHHHHHHHHhcCcchhhhccchhhhhhhccCchHHHHHHHHHHHHH
Confidence 22346677777777777778777777777777777788888888777776544
No 23
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.87 E-value=1.3e-19 Score=191.87 Aligned_cols=384 Identities=10% Similarity=0.036 Sum_probs=246.4
Q ss_pred HHHHHHhCCCHHHHHHHHHhCCC---CChhHHHHHHHHHhcCCChHHHHHHhcccCC---CChhhHHHHHHHHHhcCCHH
Q 007808 172 MINGYISCGDIVSARCLFELAPE---RDVILWNTIVSGYIDVRNMIEARKLFDQMPK---KDVISWNTMLSGYANNGDVE 245 (589)
Q Consensus 172 l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~ 245 (589)
.+......|+.++|++++..... .+...+..+...+...|++++|..++++..+ .+...+..+...+...|+.+
T Consensus 21 ~~~ia~~~g~~~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~l~~~g~~~ 100 (765)
T PRK10049 21 WLQIALWAGQDAEVITVYNRYRVHMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLILTLADAGQYD 100 (765)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHH
Confidence 34444445555555554444332 1233455555555556666666666655432 23344455555566666666
Q ss_pred HHHHHHhhCCC--C-CchhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 007808 246 ECKRLFEEMPE--R-NVFSWNGLIGGYANNGLFFEVLDAFKRMLTEGRVFPNDATIVTVLSACARLGALDFSKWVHVYAE 322 (589)
Q Consensus 246 ~A~~~~~~~~~--~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 322 (589)
+|...++++.+ | +.. +..+..++...|+.++|+..++++.+.. +.+...+..+..++...+..+.|...++.+.
T Consensus 101 eA~~~l~~~l~~~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~--P~~~~~~~~la~~l~~~~~~e~Al~~l~~~~ 177 (765)
T PRK10049 101 EALVKAKQLVSGAPDKAN-LLALAYVYKRAGRHWDELRAMTQALPRA--PQTQQYPTEYVQALRNNRLSAPALGAIDDAN 177 (765)
T ss_pred HHHHHHHHHHHhCCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHCCChHHHHHHHHhCC
Confidence 66666666543 2 233 5555556666666666666666666643 2223333444555555566666665554433
Q ss_pred HcCCCCCh------hHHHHHHHHHH-----hcCCh---HHHHHHHhhCCC---CCcch---H----HHHHHHHHhCCChH
Q 007808 323 YNGYQGNV------CVGNALIDMYA-----KCGII---ENAVDVFNSMDT---KDLIT---W----NTIISGLAMHGRGA 378 (589)
Q Consensus 323 ~~~~~~~~------~~~~~l~~~~~-----~~g~~---~~A~~~~~~~~~---~~~~~---~----~~l~~~~~~~~~~~ 378 (589)
. .|+. .....++.... ..+++ ++|++.++.+.+ .++.. + ...+.++...|+++
T Consensus 178 ~---~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~ 254 (765)
T PRK10049 178 L---TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYK 254 (765)
T ss_pred C---CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHH
Confidence 2 1110 01111222221 12223 667777766652 22211 1 11133456779999
Q ss_pred HHHHHHHHHHHCCCC-CCHhHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCC--ChHHHHHHHHHHHhcCCHHHHHHHH
Q 007808 379 GALSLFHEMKNAGEM-PDGITFIGILCACTHMGLVEEGLSYFQSMAMDYSIVP--QIEHYGCMVDLLARAGRLAEAVDFV 455 (589)
Q Consensus 379 ~A~~~~~~m~~~~~~-p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~ 455 (589)
+|+..|+++.+.+.+ |+. ....+..+|...|++++|+..|+++.......+ .......+..++...|++++|.+.+
T Consensus 255 eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l 333 (765)
T PRK10049 255 DVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVT 333 (765)
T ss_pred HHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHH
Confidence 999999999986532 332 222357789999999999999999865322111 1345666777889999999999999
Q ss_pred hhCC-CCC-------------CH---HHHHHHHHHHhcCCCHHHHHHHHHHHHccCCCCCcchHHHHHHHhhcCChHHHH
Q 007808 456 KRMP-IEA-------------DA---VIWANLLGSCRVYKNVELAELALERLTELEPKNPANFVMLSNIYGDLGRWKDVA 518 (589)
Q Consensus 456 ~~~~-~~p-------------~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~ 518 (589)
+++. ..| +. ..+..+...+...|+.++|++.++++++..|+++..+..++.++...|++++|+
T Consensus 334 ~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~~l~~~lA~l~~~~g~~~~A~ 413 (765)
T PRK10049 334 AHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPGNQGLRIDYASVLQARGWPRAAE 413 (765)
T ss_pred HHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHH
Confidence 9873 223 21 234456678889999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhCCCccCCccceeeeCCeeeeeccccCCCchHHHHHHHHHHHHcccCCCCcchHhhhhhcc
Q 007808 519 RIKVAMRDTGFKKLPGCSSIEVNEVVMLGCLSRELDRKSIVRAEANMIKLLPQNNHPLTFIVVIFSTF 586 (589)
Q Consensus 519 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 586 (589)
+.++++. +++|+++..+..++.++...|+.++|++.+.-+.+.+
T Consensus 414 ~~l~~al------------------------~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~ 457 (765)
T PRK10049 414 NELKKAE------------------------VLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVARE 457 (765)
T ss_pred HHHHHHH------------------------hhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC
Confidence 9999986 7889999999999999999999999988887776543
No 24
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.86 E-value=6.9e-19 Score=174.16 Aligned_cols=283 Identities=14% Similarity=0.104 Sum_probs=213.4
Q ss_pred HHHhcCCChHHHHHHhcccCC--C-ChhhHHHHHHHHHhcCCHHHHHHHHhhCCCC-C------chhHHHHHHHHHhCCC
Q 007808 205 SGYIDVRNMIEARKLFDQMPK--K-DVISWNTMLSGYANNGDVEECKRLFEEMPER-N------VFSWNGLIGGYANNGL 274 (589)
Q Consensus 205 ~~~~~~g~~~~a~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~------~~~~~~l~~~~~~~g~ 274 (589)
..+...|++++|...|+++.+ | +..++..+...+...|++++|..+++.+... + ...+..++..|...|+
T Consensus 43 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~ 122 (389)
T PRK11788 43 LNFLLNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGL 122 (389)
T ss_pred HHHHhcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCC
Confidence 344556666677777766654 2 3345666777777777777777777766542 1 1346677778888888
Q ss_pred hHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC----hhHHHHHHHHHHhcCChHHHH
Q 007808 275 FFEVLDAFKRMLTEGRVFPNDATIVTVLSACARLGALDFSKWVHVYAEYNGYQGN----VCVGNALIDMYAKCGIIENAV 350 (589)
Q Consensus 275 ~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~ 350 (589)
+++|..+|+++.+.. +++..++..++..+.+.|++++|...+..+.+.+..+. ...+..++..+.+.|++++|.
T Consensus 123 ~~~A~~~~~~~l~~~--~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~ 200 (389)
T PRK11788 123 LDRAEELFLQLVDEG--DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAAR 200 (389)
T ss_pred HHHHHHHHHHHHcCC--cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHH
Confidence 888888888887653 34566777788888888888888888888777653322 124556777888899999999
Q ss_pred HHHhhCCC--C-CcchHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCcHHHHHHHHHHhHHhcC
Q 007808 351 DVFNSMDT--K-DLITWNTIISGLAMHGRGAGALSLFHEMKNAGEMPDGITFIGILCACTHMGLVEEGLSYFQSMAMDYS 427 (589)
Q Consensus 351 ~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 427 (589)
..|+++.+ | +...+..++..+.+.|++++|.++++++.+.+......++..++.+|...|++++|...++++...
T Consensus 201 ~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~-- 278 (389)
T PRK11788 201 ALLKKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEE-- 278 (389)
T ss_pred HHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--
Confidence 99988763 2 455777888999999999999999999987532222456788899999999999999999998643
Q ss_pred CCCChHHHHHHHHHHHhcCCHHHHHHHHhhC-CCCCCHHHHHHHHHHHhc---CCCHHHHHHHHHHHHc
Q 007808 428 IVPQIEHYGCMVDLLARAGRLAEAVDFVKRM-PIEADAVIWANLLGSCRV---YKNVELAELALERLTE 492 (589)
Q Consensus 428 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~---~g~~~~A~~~~~~~~~ 492 (589)
.|+...+..++..+.+.|++++|..+++++ ...|+...++.++..+.. .|+.+++...++++++
T Consensus 279 -~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~ 346 (389)
T PRK11788 279 -YPGADLLLALAQLLEEQEGPEAAQALLREQLRRHPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVG 346 (389)
T ss_pred -CCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHH
Confidence 577777788999999999999999999887 567999888888876553 5588889888888876
No 25
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.86 E-value=1.4e-17 Score=172.89 Aligned_cols=425 Identities=10% Similarity=-0.006 Sum_probs=300.6
Q ss_pred HHhccCChHHHHHHHHHHHHhCCCCchHHHhHHHHHHHcCCChHHHHHHHccCCCCCee-hHHHH--HHHHHhCCCHHHH
Q 007808 109 SCVKINALREGEELHCLVLKNGFRANIFVGTALIELYSTGKAIEAAYKVFGEMDERNVV-VWTSM--INGYISCGDIVSA 185 (589)
Q Consensus 109 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~l--~~~~~~~g~~~~a 185 (589)
...+.|+++.|.+.|++.++..+.-...++ .++..+...|+.++|+..+++...|+.. .+..+ ...+...|++++|
T Consensus 43 i~~r~Gd~~~Al~~L~qaL~~~P~~~~av~-dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llalA~ly~~~gdyd~A 121 (822)
T PRK14574 43 IRARAGDTAPVLDYLQEESKAGPLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASAARAYRNEKRWDQA 121 (822)
T ss_pred HHHhCCCHHHHHHHHHHHHhhCccchhhHH-HHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHH
Confidence 345889999999999999886533222344 7888888899999999999999876433 34444 5578888999999
Q ss_pred HHHHHhCCCC---ChhHHHHHHHHHhcCCChHHHHHHhcccCC--CChhhHHHHHHHHHhcCCHHHHHHHHhhCCC--C-
Q 007808 186 RCLFELAPER---DVILWNTIVSGYIDVRNMIEARKLFDQMPK--KDVISWNTMLSGYANNGDVEECKRLFEEMPE--R- 257 (589)
Q Consensus 186 ~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~- 257 (589)
+++|+.+.+. ++..+..++..+...++.++|++.++++.+ |+...+..++..+...++..+|++.++++.+ |
T Consensus 122 iely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~l~layL~~~~~~~~~AL~~~ekll~~~P~ 201 (822)
T PRK14574 122 LALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQNYMTLSYLNRATDRNYDALQASSEAVRLAPT 201 (822)
T ss_pred HHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHHHHHHHHHHhcchHHHHHHHHHHHHHhCCC
Confidence 9999988753 566777888888999999999999999886 5544554444444445666669999998876 4
Q ss_pred CchhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCcHHHHHH--HHHHHHhc---------CCh---hHHHHHHHHHHH
Q 007808 258 NVFSWNGLIGGYANNGLFFEVLDAFKRMLTEGRVFPNDATIVT--VLSACARL---------GAL---DFSKWVHVYAEY 323 (589)
Q Consensus 258 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~--l~~~~~~~---------~~~---~~a~~~~~~~~~ 323 (589)
+...+..+..++.+.|-...|+++..+-..- +.+...-... .+.-..+. .++ +.|..-++.+..
T Consensus 202 n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~--f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~l~~ 279 (822)
T PRK14574 202 SEEVLKNHLEILQRNRIVEPALRLAKENPNL--VSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADYQNLLT 279 (822)
T ss_pred CHHHHHHHHHHHHHcCCcHHHHHHHHhCccc--cCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHh
Confidence 4566777888888999988888776653221 1222211100 01111111 122 233344444443
Q ss_pred c-C-CCCChhH----HHHHHHHHHhcCChHHHHHHHhhCCCC----CcchHHHHHHHHHhCCChHHHHHHHHHHHHCCC-
Q 007808 324 N-G-YQGNVCV----GNALIDMYAKCGIIENAVDVFNSMDTK----DLITWNTIISGLAMHGRGAGALSLFHEMKNAGE- 392 (589)
Q Consensus 324 ~-~-~~~~~~~----~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~- 392 (589)
. + .|+.... ..-.+-++...|++.++++.|+.+..+ ...+-..+.++|...+++++|+.+|+.+.....
T Consensus 280 ~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~ 359 (822)
T PRK14574 280 RWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGK 359 (822)
T ss_pred hccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcccc
Confidence 1 1 1222122 223345677888999999999988843 234566788889999999999999999876431
Q ss_pred ----CCCHhHHHHHHHHHhccCcHHHHHHHHHHhHHhcC----------CCCC---hHHHHHHHHHHHhcCCHHHHHHHH
Q 007808 393 ----MPDGITFIGILCACTHMGLVEEGLSYFQSMAMDYS----------IVPQ---IEHYGCMVDLLARAGRLAEAVDFV 455 (589)
Q Consensus 393 ----~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~----------~~~~---~~~~~~l~~~~~~~g~~~~A~~~~ 455 (589)
.++......|.-++...+++++|..+++.+..... -.|+ ...+..++..+...|++.+|++.+
T Consensus 360 ~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~l 439 (822)
T PRK14574 360 TFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKL 439 (822)
T ss_pred ccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 22333356788888999999999999998865211 0122 233445677788899999999999
Q ss_pred hhC-CCCC-CHHHHHHHHHHHhcCCCHHHHHHHHHHHHccCCCCCcchHHHHHHHhhcCChHHHHHHHHHhhhCCCccCC
Q 007808 456 KRM-PIEA-DAVIWANLLGSCRVYKNVELAELALERLTELEPKNPANFVMLSNIYGDLGRWKDVARIKVAMRDTGFKKLP 533 (589)
Q Consensus 456 ~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 533 (589)
+++ ...| |......+...+...|.+.+|++.++.+..++|++..+....+.++...|+|++|.++.+.+.
T Consensus 440 e~l~~~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~-------- 511 (822)
T PRK14574 440 EDLSSTAPANQNLRIALASIYLARDLPRKAEQELKAVESLAPRSLILERAQAETAMALQEWHQMELLTDDVI-------- 511 (822)
T ss_pred HHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCccHHHHHHHHHHHHhhhhHHHHHHHHHHHH--------
Confidence 888 3344 677777788888999999999999988888999999999999999999999999999988885
Q ss_pred ccceeeeCCeeeeeccccCCCchHHHH
Q 007808 534 GCSSIEVNEVVMLGCLSRELDRKSIVR 560 (589)
Q Consensus 534 ~~~~~~~~~~~~~~~~~~~p~~~~~~~ 560 (589)
+..|+++....
T Consensus 512 ----------------~~~Pe~~~~~~ 522 (822)
T PRK14574 512 ----------------SRSPEDIPSQE 522 (822)
T ss_pred ----------------hhCCCchhHHH
Confidence 78889987664
No 26
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.85 E-value=7e-17 Score=167.78 Aligned_cols=423 Identities=12% Similarity=0.011 Sum_probs=316.5
Q ss_pred HHHHHcCCChhHHHHHHHHhhhCCCCCCcc-cHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchHHHhHHHHHHHcCCC
Q 007808 72 FNGYAQNEFHRTVVVLFTQMKKLDAMPNCF-TFPIVLKSCVKINALREGEELHCLVLKNGFRANIFVGTALIELYSTGKA 150 (589)
Q Consensus 72 l~~~~~~~~~~~a~~~~~~m~~~~~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 150 (589)
+-...+.|++..|++.|++..+.. |+.. ....++..+...|+.++|...+++.... .+........+...|...|+
T Consensus 41 aii~~r~Gd~~~Al~~L~qaL~~~--P~~~~av~dll~l~~~~G~~~~A~~~~eka~~p-~n~~~~~llalA~ly~~~gd 117 (822)
T PRK14574 41 LIIRARAGDTAPVLDYLQEESKAG--PLQSGQVDDWLQIAGWAGRDQEVIDVYERYQSS-MNISSRGLASAARAYRNEKR 117 (822)
T ss_pred HHHHHhCCCHHHHHHHHHHHHhhC--ccchhhHHHHHHHHHHcCCcHHHHHHHHHhccC-CCCCHHHHHHHHHHHHHcCC
Confidence 334568999999999999998764 5542 2227888888889999999999999721 12223334444678889999
Q ss_pred hHHHHHHHccCCC---CCeehHHHHHHHHHhCCCHHHHHHHHHhCCCCChh--HHHHHHHHHhcCCChHHHHHHhcccCC
Q 007808 151 IEAAYKVFGEMDE---RNVVVWTSMINGYISCGDIVSARCLFELAPERDVI--LWNTIVSGYIDVRNMIEARKLFDQMPK 225 (589)
Q Consensus 151 ~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~--~~~~l~~~~~~~g~~~~a~~~~~~~~~ 225 (589)
+++|+++++++.+ .+...+..++..+...++.++|++.++.+.+.++. .+..++..+...++..+|++.++++.+
T Consensus 118 yd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~l~layL~~~~~~~~~AL~~~ekll~ 197 (822)
T PRK14574 118 WDQALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQNYMTLSYLNRATDRNYDALQASSEAVR 197 (822)
T ss_pred HHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHHHHHHHHHHhcchHHHHHHHHHHHHH
Confidence 9999999999986 24566778889999999999999999999876544 343333344446666669999999986
Q ss_pred --C-ChhhHHHHHHHHHhcCCHHHHHHHHhhCCC---CCchhH--HHHHHHHHhC---------CC---hHHHHHHHHHH
Q 007808 226 --K-DVISWNTMLSGYANNGDVEECKRLFEEMPE---RNVFSW--NGLIGGYANN---------GL---FFEVLDAFKRM 285 (589)
Q Consensus 226 --~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~--~~l~~~~~~~---------g~---~~~A~~~~~~~ 285 (589)
| +...+..+...+.+.|-...|.++..+-+. +....+ ...+.-.++. .+ .+.|+.-++.+
T Consensus 198 ~~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~l 277 (822)
T PRK14574 198 LAPTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADYQNL 277 (822)
T ss_pred hCCCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHH
Confidence 4 566778888999999999999999887664 111111 1111112211 12 34566666776
Q ss_pred HHcCCCCCc-HH----HHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHhhCCCC-
Q 007808 286 LTEGRVFPN-DA----TIVTVLSACARLGALDFSKWVHVYAEYNGYQGNVCVGNALIDMYAKCGIIENAVDVFNSMDTK- 359 (589)
Q Consensus 286 ~~~~~~~p~-~~----~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~- 359 (589)
...-+..|. .. ...-.+-++...++..++...++.+...+.+....+-.++.++|...+++++|..+|..+..+
T Consensus 278 ~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~ 357 (822)
T PRK14574 278 LTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSD 357 (822)
T ss_pred HhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcc
Confidence 653212232 22 223455678889999999999999999887766778889999999999999999999988532
Q ss_pred --------CcchHHHHHHHHHhCCChHHHHHHHHHHHHCCC-----------CCCH--h-HHHHHHHHHhccCcHHHHHH
Q 007808 360 --------DLITWNTIISGLAMHGRGAGALSLFHEMKNAGE-----------MPDG--I-TFIGILCACTHMGLVEEGLS 417 (589)
Q Consensus 360 --------~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~-----------~p~~--~-~~~~l~~~~~~~g~~~~A~~ 417 (589)
+......|..+|...+++++|..+++++.+... .||. . .+..++..+.-.|++.+|++
T Consensus 358 ~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~ 437 (822)
T PRK14574 358 GKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQK 437 (822)
T ss_pred ccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHH
Confidence 222357789999999999999999999998311 1221 1 24456677889999999999
Q ss_pred HHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHhhC-CCCCC-HHHHHHHHHHHhcCCCHHHHHHHHHHHHccCC
Q 007808 418 YFQSMAMDYSIVPQIEHYGCMVDLLARAGRLAEAVDFVKRM-PIEAD-AVIWANLLGSCRVYKNVELAELALERLTELEP 495 (589)
Q Consensus 418 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p 495 (589)
.++++.. .-+-|......+.+.+...|.+.+|++.++.+ ...|+ ..+....+.++...|++.+|....+.+.+..|
T Consensus 438 ~le~l~~--~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~~~P 515 (822)
T PRK14574 438 KLEDLSS--TAPANQNLRIALASIYLARDLPRKAEQELKAVESLAPRSLILERAQAETAMALQEWHQMELLTDDVISRSP 515 (822)
T ss_pred HHHHHHH--hCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhCC
Confidence 9999975 34557888899999999999999999999877 45664 45566677888899999999999999999999
Q ss_pred CCCc
Q 007808 496 KNPA 499 (589)
Q Consensus 496 ~~~~ 499 (589)
+++.
T Consensus 516 e~~~ 519 (822)
T PRK14574 516 EDIP 519 (822)
T ss_pred Cchh
Confidence 9874
No 27
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.82 E-value=3.4e-17 Score=148.96 Aligned_cols=272 Identities=15% Similarity=0.110 Sum_probs=212.9
Q ss_pred HHHHhcCCHHHHHHHHhhCCCCCchhHHH----HHH-HHHh-CCChHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHhcC
Q 007808 236 SGYANNGDVEECKRLFEEMPERNVFSWNG----LIG-GYAN-NGLFFEVLDAFKRMLTEGRVFPNDATIVTVLSACARLG 309 (589)
Q Consensus 236 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~----l~~-~~~~-~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~ 309 (589)
..|.+.|+++.|.++++-..+.|..+-.. |-. -|.+ -.++..|..+-+..+... .-+......-.+.....|
T Consensus 427 ~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~d--ryn~~a~~nkgn~~f~ng 504 (840)
T KOG2003|consen 427 GELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNID--RYNAAALTNKGNIAFANG 504 (840)
T ss_pred HHHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccc--ccCHHHhhcCCceeeecC
Confidence 45778999999999999888755433222 222 2222 346778888777776654 233444444444456679
Q ss_pred ChhHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHhhCC---CCCcchHHHHHHHHHhCCChHHHHHHHHH
Q 007808 310 ALDFSKWVHVYAEYNGYQGNVCVGNALIDMYAKCGIIENAVDVFNSMD---TKDLITWNTIISGLAMHGRGAGALSLFHE 386 (589)
Q Consensus 310 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 386 (589)
++++|.+.|+++...+-......|| +.-.+...|++++|++.|-++. ..+..+...+.+.|-...++..|++++-+
T Consensus 505 d~dka~~~ykeal~ndasc~ealfn-iglt~e~~~~ldeald~f~klh~il~nn~evl~qianiye~led~aqaie~~~q 583 (840)
T KOG2003|consen 505 DLDKAAEFYKEALNNDASCTEALFN-IGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQAIELLMQ 583 (840)
T ss_pred cHHHHHHHHHHHHcCchHHHHHHHH-hcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHHHHHH
Confidence 9999999999998765443344444 5556788999999999998776 45777888888999999999999999977
Q ss_pred HHHCCCCCCHhHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHhhC-CCCCCHH
Q 007808 387 MKNAGEMPDGITFIGILCACTHMGLVEEGLSYFQSMAMDYSIVPQIEHYGCMVDLLARAGRLAEAVDFVKRM-PIEADAV 465 (589)
Q Consensus 387 m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~ 465 (589)
.... ++.|+.....|...|-+.|+-.+|.+++-..-+ -++.+..+...|..-|....-+++|+.+|++. .+.|+..
T Consensus 584 ~~sl-ip~dp~ilskl~dlydqegdksqafq~~ydsyr--yfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~~ 660 (840)
T KOG2003|consen 584 ANSL-IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYR--YFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQS 660 (840)
T ss_pred hccc-CCCCHHHHHHHHHHhhcccchhhhhhhhhhccc--ccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHH
Confidence 7653 344677888899999999999999998755433 45667888888999999999999999999998 5799999
Q ss_pred HHHHHH-HHHhcCCCHHHHHHHHHHHHccCCCCCcchHHHHHHHhhcCC
Q 007808 466 IWANLL-GSCRVYKNVELAELALERLTELEPKNPANFVMLSNIYGDLGR 513 (589)
Q Consensus 466 ~~~~l~-~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 513 (589)
-|..++ +++.+.|++.+|.+.|+...+.-|.+..++..|++++...|.
T Consensus 661 kwqlmiasc~rrsgnyqka~d~yk~~hrkfpedldclkflvri~~dlgl 709 (840)
T KOG2003|consen 661 KWQLMIASCFRRSGNYQKAFDLYKDIHRKFPEDLDCLKFLVRIAGDLGL 709 (840)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHHhCccchHHHHHHHHHhccccc
Confidence 999888 556899999999999999999999999999999999988885
No 28
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.79 E-value=1.5e-14 Score=137.85 Aligned_cols=523 Identities=12% Similarity=0.064 Sum_probs=405.2
Q ss_pred cccHHHHHHhccCCchH--------------HHHHHHHHHhCCCCCccchHHHHHHHHccCChhHHHHHhhcCCC--CCc
Q 007808 2 KDTTGAHSEQLETTKHL--------------HQIQTQVVTSGLEKSDYITPRIITACAQLKQMTYARKMFDKITD--QNV 65 (589)
Q Consensus 2 ~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~ 65 (589)
|.+.....+.|++.-.+ .+++...+++ ++.++..|. +.....+.++|+-++++..+ |.
T Consensus 335 K~vvA~Avr~~P~Sv~lW~kA~dLE~~~~~K~RVlRKALe~-iP~sv~LWK----aAVelE~~~darilL~rAveccp~- 408 (913)
T KOG0495|consen 335 KTVVANAVRFLPTSVRLWLKAADLESDTKNKKRVLRKALEH-IPRSVRLWK----AAVELEEPEDARILLERAVECCPQ- 408 (913)
T ss_pred HHHHHHHHHhCCCChhhhhhHHhhhhHHHHHHHHHHHHHHh-CCchHHHHH----HHHhccChHHHHHHHHHHHHhccc-
Confidence 34455556666654332 3445444443 244444443 33344566778888877665 22
Q ss_pred ccHHHHHHHHHcCCChhHHHHHHHHhhhCCCCCCcccHHHHHHHHhccCChHHHHHHHHHH----HHhCCCCchHHHhHH
Q 007808 66 VSWNAMFNGYAQNEFHRTVVVLFTQMKKLDAMPNCFTFPIVLKSCVKINALREGEELHCLV----LKNGFRANIFVGTAL 141 (589)
Q Consensus 66 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~----~~~~~~~~~~~~~~l 141 (589)
-..|.-++++..-++.|..+++..++. ++-+...|.+....--..|+.+.+.++.++- ...|+..+..-|-.=
T Consensus 409 --s~dLwlAlarLetYenAkkvLNkaRe~-iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~e 485 (913)
T KOG0495|consen 409 --SMDLWLALARLETYENAKKVLNKAREI-IPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKE 485 (913)
T ss_pred --hHHHHHHHHHHHHHHHHHHHHHHHHhh-CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHH
Confidence 123445666777888999999998864 6777888888877777889998888887664 446777777777777
Q ss_pred HHHHHcCCChHHHHHHHccCCC------CCeehHHHHHHHHHhCCCHHHHHHHHHhCCCC---ChhHHHHHHHHHhcCCC
Q 007808 142 IELYSTGKAIEAAYKVFGEMDE------RNVVVWTSMINGYISCGDIVSARCLFELAPER---DVILWNTIVSGYIDVRN 212 (589)
Q Consensus 142 i~~~~~~g~~~~A~~~~~~~~~------~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~g~ 212 (589)
...+-..|..-.+..+...... .-..+|..-.+.|.+.+.++-|..+|....+. +...|......--..|.
T Consensus 486 Ae~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqvfp~k~slWlra~~~ek~hgt 565 (913)
T KOG0495|consen 486 AEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQVFPCKKSLWLRAAMFEKSHGT 565 (913)
T ss_pred HHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhhccchhHHHHHHHHHHHhcCc
Confidence 7777777877777777766653 23358888999999999999999999877654 55677777776777899
Q ss_pred hHHHHHHhcccCC---CChhhHHHHHHHHHhcCCHHHHHHHHhhCCC---CCchhHHHHHHHHHhCCChHHHHHHHHHHH
Q 007808 213 MIEARKLFDQMPK---KDVISWNTMLSGYANNGDVEECKRLFEEMPE---RNVFSWNGLIGGYANNGLFFEVLDAFKRML 286 (589)
Q Consensus 213 ~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 286 (589)
.++...++++... .....|-.....+...|++..|..++...-+ .+...|-.-+..-....+++.|..+|.+..
T Consensus 566 ~Esl~Allqkav~~~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pnseeiwlaavKle~en~e~eraR~llakar 645 (913)
T KOG0495|consen 566 RESLEALLQKAVEQCPKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPNSEEIWLAAVKLEFENDELERARDLLAKAR 645 (913)
T ss_pred HHHHHHHHHHHHHhCCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHHHh
Confidence 9999999988875 3456677777888889999999999998875 355778888888899999999999999998
Q ss_pred HcCCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHhhCCC---CCcch
Q 007808 287 TEGRVFPNDATIVTVLSACARLGALDFSKWVHVYAEYNGYQGNVCVGNALIDMYAKCGIIENAVDVFNSMDT---KDLIT 363 (589)
Q Consensus 287 ~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~ 363 (589)
..+ |+...|.--+..-.-.++.++|.+++++..+. ++.-...|-.+.+.+-+.++++.|.+.|..-.+ ..+..
T Consensus 646 ~~s---gTeRv~mKs~~~er~ld~~eeA~rllEe~lk~-fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipL 721 (913)
T KOG0495|consen 646 SIS---GTERVWMKSANLERYLDNVEEALRLLEEALKS-FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPL 721 (913)
T ss_pred ccC---CcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh-CCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchH
Confidence 855 78888877777777789999999999988876 466677889999999999999999999987664 25567
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHH
Q 007808 364 WNTIISGLAMHGRGAGALSLFHEMKNAGEMPDGITFIGILCACTHMGLVEEGLSYFQSMAMDYSIVPQIEHYGCMVDLLA 443 (589)
Q Consensus 364 ~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 443 (589)
|-.|...--+.|+.-+|..+|++..-.+ +-+...|...|+.-.+.|+.+.|..+..+++++ .+.+...|..-|...-
T Consensus 722 WllLakleEk~~~~~rAR~ildrarlkN-Pk~~~lwle~Ir~ElR~gn~~~a~~lmakALQe--cp~sg~LWaEaI~le~ 798 (913)
T KOG0495|consen 722 WLLLAKLEEKDGQLVRARSILDRARLKN-PKNALLWLESIRMELRAGNKEQAELLMAKALQE--CPSSGLLWAEAIWLEP 798 (913)
T ss_pred HHHHHHHHHHhcchhhHHHHHHHHHhcC-CCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCccchhHHHHHHhcc
Confidence 8888888888899999999999998764 447788999999999999999999999998874 4556678888888888
Q ss_pred hcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHccCCCCCcchHHHHHHHhhcCChHHHHHHHHH
Q 007808 444 RAGRLAEAVDFVKRMPIEADAVIWANLLGSCRVYKNVELAELALERLTELEPKNPANFVMLSNIYGDLGRWKDVARIKVA 523 (589)
Q Consensus 444 ~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 523 (589)
+.++-..+.+.+++... |+.....+...+....++++|.+-|.+++..+|++..+|..+-..+.+.|.-++-.+++++
T Consensus 799 ~~~rkTks~DALkkce~--dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~d~GD~wa~fykfel~hG~eed~kev~~~ 876 (913)
T KOG0495|consen 799 RPQRKTKSIDALKKCEH--DPHVLLAIAKLFWSEKKIEKAREWFERAVKKDPDNGDAWAWFYKFELRHGTEEDQKEVLKK 876 (913)
T ss_pred CcccchHHHHHHHhccC--CchhHHHHHHHHHHHHHHHHHHHHHHHHHccCCccchHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 88888888888888864 4455666777788889999999999999999999999999999999999999998898888
Q ss_pred hhhCCCccCCccceeeeCCee
Q 007808 524 MRDTGFKKLPGCSSIEVNEVV 544 (589)
Q Consensus 524 ~~~~~~~~~~~~~~~~~~~~~ 544 (589)
.. ..+|.-|..|....+.+
T Consensus 877 c~--~~EP~hG~~W~avSK~i 895 (913)
T KOG0495|consen 877 CE--TAEPTHGELWQAVSKDI 895 (913)
T ss_pred Hh--ccCCCCCcHHHHHhhhH
Confidence 74 23445565565554443
No 29
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.78 E-value=3e-17 Score=157.08 Aligned_cols=273 Identities=13% Similarity=0.104 Sum_probs=221.5
Q ss_pred CChHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCC--CCChhHHHHHHHHHHhcCChHHHH
Q 007808 273 GLFFEVLDAFKRMLTEGRVFPNDATIVTVLSACARLGALDFSKWVHVYAEYNGY--QGNVCVGNALIDMYAKCGIIENAV 350 (589)
Q Consensus 273 g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~ 350 (589)
-+..+|+..|...... +.-.......+..+|...+++++++.+|+.+.+... -.+..+|.+.+--+-+.-.+..--
T Consensus 333 y~~~~A~~~~~klp~h--~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~La 410 (638)
T KOG1126|consen 333 YNCREALNLFEKLPSH--HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALSYLA 410 (638)
T ss_pred HHHHHHHHHHHhhHHh--cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHHHHH
Confidence 4578899999985443 334456777788899999999999999999887641 235667776654333221221111
Q ss_pred HHHhhCCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHHCCCCC-CHhHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCC
Q 007808 351 DVFNSMDTKDLITWNTIISGLAMHGRGAGALSLFHEMKNAGEMP-DGITFIGILCACTHMGLVEEGLSYFQSMAMDYSIV 429 (589)
Q Consensus 351 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 429 (589)
+-+-.+.+..+.+|-++..+|.-+++.+.|++.|++..+ +.| ...+|+.+..-+.....+|.|...|+.++.
T Consensus 411 q~Li~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQ--ldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~----- 483 (638)
T KOG1126|consen 411 QDLIDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQ--LDPRFAYAYTLLGHESIATEEFDKAMKSFRKALG----- 483 (638)
T ss_pred HHHHhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhc--cCCccchhhhhcCChhhhhHHHHhHHHHHHhhhc-----
Confidence 222223345788999999999999999999999999998 577 677888888888889999999999998873
Q ss_pred CChHHHH---HHHHHHHhcCCHHHHHHHHhhC-CCCC-CHHHHHHHHHHHhcCCCHHHHHHHHHHHHccCCCCCcchHHH
Q 007808 430 PQIEHYG---CMVDLLARAGRLAEAVDFVKRM-PIEA-DAVIWANLLGSCRVYKNVELAELALERLTELEPKNPANFVML 504 (589)
Q Consensus 430 ~~~~~~~---~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l 504 (589)
.|+.+|+ .|+-.|.+.++++.|+-.|+++ .+.| +......++..+.+.|+.++|++++++++.++|.|+-..+..
T Consensus 484 ~~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~ 563 (638)
T KOG1126|consen 484 VDPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHR 563 (638)
T ss_pred CCchhhHHHHhhhhheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHH
Confidence 5555555 5677899999999999999998 6777 556667777889999999999999999999999999999999
Q ss_pred HHHHhhcCChHHHHHHHHHhhhCCCccCCccceeeeCCeeeeeccccCCCchHHHHHHHHHHHHcccCCCCcch
Q 007808 505 SNIYGDLGRWKDVARIKVAMRDTGFKKLPGCSSIEVNEVVMLGCLSRELDRKSIVRAEANMIKLLPQNNHPLTF 578 (589)
Q Consensus 505 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~ 578 (589)
+.++...+++++|+..+++++ ++-|+++.++.++|.+|.++|+...|+-.
T Consensus 564 ~~il~~~~~~~eal~~LEeLk------------------------~~vP~es~v~~llgki~k~~~~~~~Al~~ 613 (638)
T KOG1126|consen 564 ASILFSLGRYVEALQELEELK------------------------ELVPQESSVFALLGKIYKRLGNTDLALLH 613 (638)
T ss_pred HHHHHhhcchHHHHHHHHHHH------------------------HhCcchHHHHHHHHHHHHHHccchHHHHh
Confidence 999999999999999999997 78899999999999999999999877643
No 30
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.78 E-value=1.7e-14 Score=142.81 Aligned_cols=524 Identities=11% Similarity=0.023 Sum_probs=335.6
Q ss_pred HHHHHHccCChhHHHHHhhcCCC---CCcccHHHHHHHHHcCCChhHHHHHHHHhhhCCCCCCcccHHHHHHHHhccCCh
Q 007808 40 IITACAQLKQMTYARKMFDKITD---QNVVSWNAMFNGYAQNEFHRTVVVLFTQMKKLDAMPNCFTFPIVLKSCVKINAL 116 (589)
Q Consensus 40 l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~ 116 (589)
..+.+.-.|+.++|.+++.++.+ .+..+|..|...|-+.|+.+++...+-...... +-|...|..+.......|.+
T Consensus 145 eAN~lfarg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~-p~d~e~W~~ladls~~~~~i 223 (895)
T KOG2076|consen 145 EANNLFARGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLN-PKDYELWKRLADLSEQLGNI 223 (895)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHhcccH
Confidence 33444445999999999999876 466789999999999999999988775554443 44668899999999999999
Q ss_pred HHHHHHHHHHHHhCCCCchHHHhHHHHHHHcCCChHHHHHHHccCCCCCe-e-------hHHHHHHHHHhCCCHHHHHHH
Q 007808 117 REGEELHCLVLKNGFRANIFVGTALIELYSTGKAIEAAYKVFGEMDERNV-V-------VWTSMINGYISCGDIVSARCL 188 (589)
Q Consensus 117 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-~-------~~~~l~~~~~~~g~~~~a~~~ 188 (589)
.+|.-.|.+.++.. +++...+-.-+..|-+.|+...|.+-|.++.+.++ + .--..+..+...++-+.|.+.
T Consensus 224 ~qA~~cy~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~ 302 (895)
T KOG2076|consen 224 NQARYCYSRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKA 302 (895)
T ss_pred HHHHHHHHHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 99999999999986 44555555567889999999999999988876333 1 223345667778888999988
Q ss_pred HHhCCCC-----ChhHHHHHHHHHhcCCChHHHHHHhcccCC-------------------------------CChhh-H
Q 007808 189 FELAPER-----DVILWNTIVSGYIDVRNMIEARKLFDQMPK-------------------------------KDVIS-W 231 (589)
Q Consensus 189 ~~~~~~~-----~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-------------------------------~~~~~-~ 231 (589)
++..... +...++.++..+.+...++.+......... ++..+ +
T Consensus 303 le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~r 382 (895)
T KOG2076|consen 303 LEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIR 382 (895)
T ss_pred HHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhHh
Confidence 8876642 455778888888888888888776654431 12222 1
Q ss_pred HHHHHHHHhcCCHHHHHHHHhhCCC----CCchhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHh
Q 007808 232 NTMLSGYANNGDVEECKRLFEEMPE----RNVFSWNGLIGGYANNGLFFEVLDAFKRMLTEGRVFPNDATIVTVLSACAR 307 (589)
Q Consensus 232 ~~l~~~~~~~~~~~~A~~~~~~~~~----~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 307 (589)
..+--...+.+...+++.-+-.... .++..|..+..+|.+.|++.+|+.+|..+.... .--+...|..+..++..
T Consensus 383 l~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~-~~~~~~vw~~~a~c~~~ 461 (895)
T KOG2076|consen 383 LMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNRE-GYQNAFVWYKLARCYME 461 (895)
T ss_pred HhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCc-cccchhhhHHHHHHHHH
Confidence 1111222233344444333322222 345678889999999999999999999998876 44456688899999999
Q ss_pred cCChhHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHhhCCCCCcc------------hHHHHHHHHHhCC
Q 007808 308 LGALDFSKWVHVYAEYNGYQGNVCVGNALIDMYAKCGIIENAVDVFNSMDTKDLI------------TWNTIISGLAMHG 375 (589)
Q Consensus 308 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~------------~~~~l~~~~~~~~ 375 (589)
.|..++|.+.|+..+... |.+......|...+.+.|+.++|.+++..+..||.. ..-.....+.+.|
T Consensus 462 l~e~e~A~e~y~kvl~~~-p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~g 540 (895)
T KOG2076|consen 462 LGEYEEAIEFYEKVLILA-PDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVG 540 (895)
T ss_pred HhhHHHHHHHHHHHHhcC-CCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhh
Confidence 999999999999998875 567777888999999999999999999998766521 1222344566777
Q ss_pred ChHHHHHHHHHHHHCC-----CCC-----------------CHhHHHHHHHHHhccCcHHHHHHHHH-----HhHHhcCC
Q 007808 376 RGAGALSLFHEMKNAG-----EMP-----------------DGITFIGILCACTHMGLVEEGLSYFQ-----SMAMDYSI 428 (589)
Q Consensus 376 ~~~~A~~~~~~m~~~~-----~~p-----------------~~~~~~~l~~~~~~~g~~~~A~~~~~-----~~~~~~~~ 428 (589)
+.++=+.+...|.... +-| ...+...++.+-.+.++.....+-.. ......++
T Consensus 541 k~E~fi~t~~~Lv~~~~~~~~~f~~~~k~r~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~d~~~~~~~e~~~L 620 (895)
T KOG2076|consen 541 KREEFINTASTLVDDFLKKRYIFPRNKKKRRRAIAGTTSKRYSELLKQIIRAREKATDDNVMEKALSDGTEFRAVELRGL 620 (895)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHhhccccccccchhHHHHHHHHhccCchHHhhhcccchhhhhhhhhccC
Confidence 7776555444443211 111 11122233333333333222211111 01111132
Q ss_pred CCC--hHHHHHHHHHHHhcCCHHHHHHHHhhCC----CCCCHH---HHH-HHHHHHhcCCCHHHHHHHHHHHHcc-----
Q 007808 429 VPQ--IEHYGCMVDLLARAGRLAEAVDFVKRMP----IEADAV---IWA-NLLGSCRVYKNVELAELALERLTEL----- 493 (589)
Q Consensus 429 ~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~p~~~---~~~-~l~~~~~~~g~~~~A~~~~~~~~~~----- 493 (589)
.-+ -..+.-++..+.+.+++++|+.+...+. +.-+.. .+. ..+.+....+++..|...++.++..
T Consensus 621 siddwfel~~e~i~~L~k~~r~qeAl~vv~~a~~~~~f~~~~~~~k~l~~~~l~~s~~~~d~~~a~~~lR~~i~~~~~~~ 700 (895)
T KOG2076|consen 621 SIDDWFELFRELILSLAKLQRVQEALSVVFTALEAYIFFQDSEIRKELQFLGLKASLYARDPGDAFSYLRSVITQFQFYL 700 (895)
T ss_pred cHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhhh
Confidence 222 2344556777888888888888777662 111221 222 2335556778888888888888775
Q ss_pred CCCCCcchHHHHHHHhhcCChHHHHHHHHHhhhCCCccCCcccee------eeCC-----eeeeeccccCCCchHHHHHH
Q 007808 494 EPKNPANFVMLSNIYGDLGRWKDVARIKVAMRDTGFKKLPGCSSI------EVNE-----VVMLGCLSRELDRKSIVRAE 562 (589)
Q Consensus 494 ~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~------~~~~-----~~~~~~~~~~p~~~~~~~~l 562 (589)
+|.....|+...+...+.|+----.+++.++...+-+.+|....+ ..+. .....+...+|++|-+...+
T Consensus 701 ~~~q~~l~n~~~s~~~~~~q~v~~~R~~~~~~~~~~~~~~~l~~i~gh~~~~~~s~~~Al~~y~ra~~~~pd~Pl~nl~l 780 (895)
T KOG2076|consen 701 DVYQLNLWNLDFSYFSKYGQRVCYLRLIMRLLVKNKDDTPPLALIYGHNLFVNASFKHALQEYMRAFRQNPDSPLINLCL 780 (895)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccCCcceeeeechhHhhccchHHHHHHHHHHHHhCCCCcHHHHHH
Confidence 555455555455555555554444444444432221111211110 0000 01111668999999998887
Q ss_pred HHHHH
Q 007808 563 ANMIK 567 (589)
Q Consensus 563 ~~~~~ 567 (589)
|-++-
T Consensus 781 glafi 785 (895)
T KOG2076|consen 781 GLAFI 785 (895)
T ss_pred HHHHH
Confidence 76654
No 31
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.74 E-value=8.9e-18 Score=157.19 Aligned_cols=254 Identities=14% Similarity=0.114 Sum_probs=99.1
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHcC-CCCChhHHHHHHHHHHhcCChHHHHHHHhhCCCC---CcchHHHHHHHHHhCC
Q 007808 300 TVLSACARLGALDFSKWVHVYAEYNG-YQGNVCVGNALIDMYAKCGIIENAVDVFNSMDTK---DLITWNTIISGLAMHG 375 (589)
Q Consensus 300 ~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~ 375 (589)
.+...+.+.|++++|.+++....... .+.+...+..+.......++.+.|.+.++++... ++..+..++.. ...+
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~~~~~~~~l~~l-~~~~ 91 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKANPQDYERLIQL-LQDG 91 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-cccc
Confidence 33455556666666666664433332 2334444555555556666777777777766632 33455555555 5777
Q ss_pred ChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHH
Q 007808 376 RGAGALSLFHEMKNAGEMPDGITFIGILCACTHMGLVEEGLSYFQSMAMDYSIVPQIEHYGCMVDLLARAGRLAEAVDFV 455 (589)
Q Consensus 376 ~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 455 (589)
++++|.+++.+..+. .++...+..++..+...++++++..+++.+......+++...|..++..+.+.|+.++|++.+
T Consensus 92 ~~~~A~~~~~~~~~~--~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~ 169 (280)
T PF13429_consen 92 DPEEALKLAEKAYER--DGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDY 169 (280)
T ss_dssp ----------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHH
T ss_pred ccccccccccccccc--ccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 778887777766553 345555666777777778888888887776544344566777777778888888888888888
Q ss_pred hhC-CCCC-CHHHHHHHHHHHhcCCCHHHHHHHHHHHHccCCCCCcchHHHHHHHhhcCChHHHHHHHHHhhhCCCccCC
Q 007808 456 KRM-PIEA-DAVIWANLLGSCRVYKNVELAELALERLTELEPKNPANFVMLSNIYGDLGRWKDVARIKVAMRDTGFKKLP 533 (589)
Q Consensus 456 ~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 533 (589)
+++ ...| |......++..+...|+.+++.++++...+..|+++..+..++.+|...|+.++|+..+++..
T Consensus 170 ~~al~~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~-------- 241 (280)
T PF13429_consen 170 RKALELDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKAL-------- 241 (280)
T ss_dssp HHHHHH-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHH--------
T ss_pred HHHHHcCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhccccccccccccccccc--------
Confidence 777 3455 356667777778888888887788777777777777788888888888888888888888775
Q ss_pred ccceeeeCCeeeeeccccCCCchHHHHHHHHHHHHcccCCCCcchHh
Q 007808 534 GCSSIEVNEVVMLGCLSRELDRKSIVRAEANMIKLLPQNNHPLTFIV 580 (589)
Q Consensus 534 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~ 580 (589)
+.+|+|+.++..+|.++...|+.++|.++..
T Consensus 242 ----------------~~~p~d~~~~~~~a~~l~~~g~~~~A~~~~~ 272 (280)
T PF13429_consen 242 ----------------KLNPDDPLWLLAYADALEQAGRKDEALRLRR 272 (280)
T ss_dssp ----------------HHSTT-HHHHHHHHHHHT-------------
T ss_pred ----------------ccccccccccccccccccccccccccccccc
Confidence 6678888888888888888888887776654
No 32
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.74 E-value=1.3e-12 Score=124.88 Aligned_cols=451 Identities=11% Similarity=0.049 Sum_probs=296.0
Q ss_pred ccCChHHHHHHHHHHHHhCCCCchHHHhHHHHHHHcCCChHHHHHHHccCCC---CCeehHHHHHHHHHhCCCHHHHHHH
Q 007808 112 KINALREGEELHCLVLKNGFRANIFVGTALIELYSTGKAIEAAYKVFGEMDE---RNVVVWTSMINGYISCGDIVSARCL 188 (589)
Q Consensus 112 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~ 188 (589)
...+.+.|.-++....+. ++.+...+. +|++..-++.|..++++..+ .+...|.+-...--.+|+.+...++
T Consensus 388 elE~~~darilL~rAvec-cp~s~dLwl----AlarLetYenAkkvLNkaRe~iptd~~IWitaa~LEE~ngn~~mv~ki 462 (913)
T KOG0495|consen 388 ELEEPEDARILLERAVEC-CPQSMDLWL----ALARLETYENAKKVLNKAREIIPTDREIWITAAKLEEANGNVDMVEKI 462 (913)
T ss_pred hccChHHHHHHHHHHHHh-ccchHHHHH----HHHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHhcCCHHHHHHH
Confidence 345555677777777665 233333333 34455566777777766654 4666777777777777877777777
Q ss_pred HHhCC--------CCChhHHHHHHHHHhcCCChHHHHHHhcccCC------CChhhHHHHHHHHHhcCCHHHHHHHHhhC
Q 007808 189 FELAP--------ERDVILWNTIVSGYIDVRNMIEARKLFDQMPK------KDVISWNTMLSGYANNGDVEECKRLFEEM 254 (589)
Q Consensus 189 ~~~~~--------~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~------~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 254 (589)
+.+.. ..+...|-.=...|-..|..-.+..+...... .-..+|..-...|.+.+.++-|..+|...
T Consensus 463 i~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~a 542 (913)
T KOG0495|consen 463 IDRGLSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHA 542 (913)
T ss_pred HHHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHH
Confidence 76543 12445555556666666666666666555442 23456777778888888888888888877
Q ss_pred CC---CCchhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChh
Q 007808 255 PE---RNVFSWNGLIGGYANNGLFFEVLDAFKRMLTEGRVFPNDATIVTVLSACARLGALDFSKWVHVYAEYNGYQGNVC 331 (589)
Q Consensus 255 ~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 331 (589)
.+ .+...|...+..--..|..++-..+|.++...- +-....+.......-..|+...|..++..+.+.. +.+..
T Consensus 543 lqvfp~k~slWlra~~~ek~hgt~Esl~Allqkav~~~--pkae~lwlM~ake~w~agdv~~ar~il~~af~~~-pnsee 619 (913)
T KOG0495|consen 543 LQVFPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQC--PKAEILWLMYAKEKWKAGDVPAARVILDQAFEAN-PNSEE 619 (913)
T ss_pred HhhccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhC--CcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhC-CCcHH
Confidence 76 244566666655556677888888888888763 3333444445555667788888888888888775 44677
Q ss_pred HHHHHHHHHHhcCChHHHHHHHhhCC--CCCcchHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCC-HhHHHHHHHHHhc
Q 007808 332 VGNALIDMYAKCGIIENAVDVFNSMD--TKDLITWNTIISGLAMHGRGAGALSLFHEMKNAGEMPD-GITFIGILCACTH 408 (589)
Q Consensus 332 ~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~-~~~~~~l~~~~~~ 408 (589)
++-+-+.......+++.|..+|.+.. .+....|..-+...--.++.++|+.++++.++. -|+ ...|..+.+.+.+
T Consensus 620 iwlaavKle~en~e~eraR~llakar~~sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~--fp~f~Kl~lmlGQi~e~ 697 (913)
T KOG0495|consen 620 IWLAAVKLEFENDELERARDLLAKARSISGTERVWMKSANLERYLDNVEEALRLLEEALKS--FPDFHKLWLMLGQIEEQ 697 (913)
T ss_pred HHHHHHHHhhccccHHHHHHHHHHHhccCCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh--CCchHHHHHHHhHHHHH
Confidence 77777788888888888888888765 456666766666666678888888888887773 454 3466777777888
Q ss_pred cCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHhhCC--CCCCHHHHHHHHHHHhcCCCHHHHHHH
Q 007808 409 MGLVEEGLSYFQSMAMDYSIVPQIEHYGCMVDLLARAGRLAEAVDFVKRMP--IEADAVIWANLLGSCRVYKNVELAELA 486 (589)
Q Consensus 409 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~A~~~ 486 (589)
.++.+.|...|..-.+ ..+-.+..|..|.+.=.+.|..-+|..++++.. .+.+...|...+..-.+.|+.+.|..+
T Consensus 698 ~~~ie~aR~aY~~G~k--~cP~~ipLWllLakleEk~~~~~rAR~ildrarlkNPk~~~lwle~Ir~ElR~gn~~~a~~l 775 (913)
T KOG0495|consen 698 MENIEMAREAYLQGTK--KCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKNPKNALLWLESIRMELRAGNKEQAELL 775 (913)
T ss_pred HHHHHHHHHHHHhccc--cCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCCCcchhHHHHHHHHHHcCCHHHHHHH
Confidence 8888888887765543 233345677777777778888888888888773 333667777778887888888888888
Q ss_pred HHHHHccCCCCCcchHHHHHHHhhcCChHHHHHHHHHhhhCCCccCCcc-------ceeeeCCee----eeeccccCCCc
Q 007808 487 LERLTELEPKNPANFVMLSNIYGDLGRWKDVARIKVAMRDTGFKKLPGC-------SSIEVNEVV----MLGCLSRELDR 555 (589)
Q Consensus 487 ~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~-------~~~~~~~~~----~~~~~~~~p~~ 555 (589)
..++++--|.+...|..-+++.-+.++-......+++- ..+|+. .|.+..-.- -..+++.+|++
T Consensus 776 makALQecp~sg~LWaEaI~le~~~~rkTks~DALkkc-----e~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~d~ 850 (913)
T KOG0495|consen 776 MAKALQECPSSGLLWAEAIWLEPRPQRKTKSIDALKKC-----EHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKDPDN 850 (913)
T ss_pred HHHHHHhCCccchhHHHHHHhccCcccchHHHHHHHhc-----cCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccCCcc
Confidence 88887776665555555555555555544444444432 122211 011111100 11156889999
Q ss_pred hHHHHHHHHHHHHcccCCCCcchH
Q 007808 556 KSIVRAEANMIKLLPQNNHPLTFI 579 (589)
Q Consensus 556 ~~~~~~l~~~~~~~~~~~~~~~~~ 579 (589)
.+++..+=.-+...|..++....+
T Consensus 851 GD~wa~fykfel~hG~eed~kev~ 874 (913)
T KOG0495|consen 851 GDAWAWFYKFELRHGTEEDQKEVL 874 (913)
T ss_pred chHHHHHHHHHHHhCCHHHHHHHH
Confidence 999887777777777655544443
No 33
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.73 E-value=1.1e-14 Score=132.84 Aligned_cols=439 Identities=11% Similarity=0.055 Sum_probs=277.4
Q ss_pred HHHHHHcCCChhHHHHHHHHhhhCCCCCCcccHH-HHHHHHhccCChHHHHHHHHHHHHhCCCCch----HHHhHHHHHH
Q 007808 71 MFNGYAQNEFHRTVVVLFTQMKKLDAMPNCFTFP-IVLKSCVKINALREGEELHCLVLKNGFRANI----FVGTALIELY 145 (589)
Q Consensus 71 ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~-~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~li~~~ 145 (589)
|..-|..+....+|+..|+-+.+...-|+...+. .+...+.+.+.+.+|.+.|+..+..-+..+. ...+.+.-.+
T Consensus 207 laqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~nigvtf 286 (840)
T KOG2003|consen 207 LAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNIGVTF 286 (840)
T ss_pred HHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhcCeeE
Confidence 3445666677788888888888777777766543 3345667778888888888887776433332 2344444566
Q ss_pred HcCCChHHHHHHHccCCC--CCeehHHHHHHHHHhCCCHHHHHHHHHhCCC----------------CChhHHHH-----
Q 007808 146 STGKAIEAAYKVFGEMDE--RNVVVWTSMINGYISCGDIVSARCLFELAPE----------------RDVILWNT----- 202 (589)
Q Consensus 146 ~~~g~~~~A~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~----------------~~~~~~~~----- 202 (589)
.+.|.++.|+.-|+...+ |+..+-..|+-++...|+-++..+.|..+.. |+....+.
T Consensus 287 iq~gqy~dainsfdh~m~~~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~eai~nd 366 (840)
T KOG2003|consen 287 IQAGQYDDAINSFDHCMEEAPNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNEAIKND 366 (840)
T ss_pred EecccchhhHhhHHHHHHhCccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHHHHhhH
Confidence 778888888888877665 5555545555566667777777777766642 11111111
Q ss_pred HHHHHhcCCC--hHHHHHHhcccCC----CChh-hHHHHHHHHHhcCCHHHHHHHHhhCCCCCchhHHHHHHHHHhCCCh
Q 007808 203 IVSGYIDVRN--MIEARKLFDQMPK----KDVI-SWNTMLSGYANNGDVEECKRLFEEMPERNVFSWNGLIGGYANNGLF 275 (589)
Q Consensus 203 l~~~~~~~g~--~~~a~~~~~~~~~----~~~~-~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 275 (589)
.++-+-+.+. .++++-.-.++.. |+-. .+.-.+...-.....+-|.+ . --.-...|.+.|++
T Consensus 367 ~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~d---------l--ei~ka~~~lk~~d~ 435 (840)
T KOG2003|consen 367 HLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAID---------L--EINKAGELLKNGDI 435 (840)
T ss_pred HHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhh---------h--hhhHHHHHHhccCH
Confidence 1111111110 1111111111111 1100 00000000000000000000 0 00123457899999
Q ss_pred HHHHHHHHHHHHcCCCCCcHHHHHHHHHH-HHh-cCChhHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHH
Q 007808 276 FEVLDAFKRMLTEGRVFPNDATIVTVLSA-CAR-LGALDFSKWVHVYAEYNGYQGNVCVGNALIDMYAKCGIIENAVDVF 353 (589)
Q Consensus 276 ~~A~~~~~~~~~~~~~~p~~~~~~~l~~~-~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 353 (589)
+.|+++++-..+.. -+.-...-+.+... +.+ ..++..|.++-+.+...+ ..+......-...-...|++++|.+.|
T Consensus 436 ~~aieilkv~~~kd-nk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~d-ryn~~a~~nkgn~~f~ngd~dka~~~y 513 (840)
T KOG2003|consen 436 EGAIEILKVFEKKD-NKTASAAANNLCALRFLQGGKDFADAQQYADIALNID-RYNAAALTNKGNIAFANGDLDKAAEFY 513 (840)
T ss_pred HHHHHHHHHHHhcc-chhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccc-ccCHHHhhcCCceeeecCcHHHHHHHH
Confidence 99999999887765 22222222333222 222 346667777666655433 233333333333445678999999999
Q ss_pred hhCCCCCcchHHHHH---HHHHhCCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCC
Q 007808 354 NSMDTKDLITWNTII---SGLAMHGRGAGALSLFHEMKNAGEMPDGITFIGILCACTHMGLVEEGLSYFQSMAMDYSIVP 430 (589)
Q Consensus 354 ~~~~~~~~~~~~~l~---~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 430 (589)
++....|...-..|. -.+-..|+.++|++.|-++..- +..+......+...|....+..+|++++.+... -++.
T Consensus 514 keal~ndasc~ealfniglt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie~~~q~~s--lip~ 590 (840)
T KOG2003|consen 514 KEALNNDASCTEALFNIGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIELLMQANS--LIPN 590 (840)
T ss_pred HHHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhcc--cCCC
Confidence 999877665444443 3466789999999999887763 344667777888999999999999999987742 4556
Q ss_pred ChHHHHHHHHHHHhcCCHHHHHHHHhhC-C-CCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHccCCCCCcchHHHHHHH
Q 007808 431 QIEHYGCMVDLLARAGRLAEAVDFVKRM-P-IEADAVIWANLLGSCRVYKNVELAELALERLTELEPKNPANFVMLSNIY 508 (589)
Q Consensus 431 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~-~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 508 (589)
|+.+.+.|.+.|-+.|+-.+|.+..-+- . ++.+..+..-|..-|....-+++|+.+|+++--+.|+....-..++.++
T Consensus 591 dp~ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~~kwqlmiasc~ 670 (840)
T KOG2003|consen 591 DPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQSKWQLMIASCF 670 (840)
T ss_pred CHHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHH
Confidence 7889999999999999999999875544 4 4457777777777788888899999999999999998665666677888
Q ss_pred hhcCChHHHHHHHHHhh
Q 007808 509 GDLGRWKDVARIKVAMR 525 (589)
Q Consensus 509 ~~~g~~~~A~~~~~~~~ 525 (589)
.|.|++++|..+|+...
T Consensus 671 rrsgnyqka~d~yk~~h 687 (840)
T KOG2003|consen 671 RRSGNYQKAFDLYKDIH 687 (840)
T ss_pred HhcccHHHHHHHHHHHH
Confidence 89999999999999985
No 34
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.73 E-value=2e-14 Score=132.55 Aligned_cols=215 Identities=15% Similarity=0.104 Sum_probs=175.6
Q ss_pred HHhcCChhHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHhhCC---CCCcchHHHHHHHHHhCCChHHHH
Q 007808 305 CARLGALDFSKWVHVYAEYNGYQGNVCVGNALIDMYAKCGIIENAVDVFNSMD---TKDLITWNTIISGLAMHGRGAGAL 381 (589)
Q Consensus 305 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~ 381 (589)
+.-.|+.-.+.+-++..+..... +...|-.+..+|....+.++-...|+... +.|+.+|..-.+.+.-.+++++|.
T Consensus 336 ~fL~g~~~~a~~d~~~~I~l~~~-~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~ 414 (606)
T KOG0547|consen 336 HFLKGDSLGAQEDFDAAIKLDPA-FNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAI 414 (606)
T ss_pred hhhcCCchhhhhhHHHHHhcCcc-cchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHH
Confidence 34567888888888888887633 33447778888999999999999998776 347788988888888899999999
Q ss_pred HHHHHHHHCCCCC-CHhHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHhhC-C
Q 007808 382 SLFHEMKNAGEMP-DGITFIGILCACTHMGLVEEGLSYFQSMAMDYSIVPQIEHYGCMVDLLARAGRLAEAVDFVKRM-P 459 (589)
Q Consensus 382 ~~~~~m~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~ 459 (589)
.=|++.+. +.| +...|..+.-+..+.+.++++...|++..++ ++..+..|+....++...+++++|.+.|+.. .
T Consensus 415 aDF~Kai~--L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk--FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~ 490 (606)
T KOG0547|consen 415 ADFQKAIS--LDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKK--FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIE 490 (606)
T ss_pred HHHHHHhh--cChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHh
Confidence 99999998 566 5667777777778899999999999999874 4555778999999999999999999999987 3
Q ss_pred CCCC---------HHHHHHHHHHHhcCCCHHHHHHHHHHHHccCCCCCcchHHHHHHHhhcCChHHHHHHHHHhh
Q 007808 460 IEAD---------AVIWANLLGSCRVYKNVELAELALERLTELEPKNPANFVMLSNIYGDLGRWKDVARIKVAMR 525 (589)
Q Consensus 460 ~~p~---------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 525 (589)
+.|. +..-..++. +.-.+++..|+++++++++++|....+|..|+.+..+.|+.++|+++|++..
T Consensus 491 LE~~~~~~~v~~~plV~Ka~l~-~qwk~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa 564 (606)
T KOG0547|consen 491 LEPREHLIIVNAAPLVHKALLV-LQWKEDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSA 564 (606)
T ss_pred hccccccccccchhhhhhhHhh-hchhhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 4443 222222222 2234899999999999999999999999999999999999999999999874
No 35
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.72 E-value=5.3e-14 Score=128.96 Aligned_cols=369 Identities=13% Similarity=0.077 Sum_probs=277.7
Q ss_pred CCChhHHHHHHHHHhcCCChHHHHHHhcccCCCChhhHHHHHHHHHhcCCHHHHHHHHhhCCCCCch-hHHHHHHHHHhC
Q 007808 194 ERDVILWNTIVSGYIDVRNMIEARKLFDQMPKKDVISWNTMLSGYANNGDVEECKRLFEEMPERNVF-SWNGLIGGYANN 272 (589)
Q Consensus 194 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~l~~~~~~~ 272 (589)
+.|...+......+.+.|....|+..|......-+..|.+.+....-..+.+.+..+.......+.. .--.+..++...
T Consensus 161 ~~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~P~~W~AWleL~~lit~~e~~~~l~~~l~~~~h~M~~~F~~~a~~el 240 (559)
T KOG1155|consen 161 EKDEFLLYLYGVVLKELGLLSLAIDSFVEVVNRYPWFWSAWLELSELITDIEILSILVVGLPSDMHWMKKFFLKKAYQEL 240 (559)
T ss_pred cchhHHHHHHHHHHHhhchHHHHHHHHHHHHhcCCcchHHHHHHHHhhchHHHHHHHHhcCcccchHHHHHHHHHHHHHH
Confidence 3466666667777788899999999998877666667777666665566666666655555543222 222345567777
Q ss_pred CChHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCC--CChhHHHHHHHHHHhcCChHH-H
Q 007808 273 GLFFEVLDAFKRMLTEGRVFPNDATIVTVLSACARLGALDFSKWVHVYAEYNGYQ--GNVCVGNALIDMYAKCGIIEN-A 349 (589)
Q Consensus 273 g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~-A 349 (589)
.+.++++.-.......| .+-+...-+....+.....++++|+.+|+.+.+...- .+..+|+.++-.--.+.++.- |
T Consensus 241 ~q~~e~~~k~e~l~~~g-f~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~skLs~LA 319 (559)
T KOG1155|consen 241 HQHEEALQKKERLSSVG-FPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKLSYLA 319 (559)
T ss_pred HHHHHHHHHHHHHHhcc-CCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHHHHHHH
Confidence 78889998888888887 5555555555556677888999999999999987421 256677666533322222221 2
Q ss_pred HHHHhhCCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCC-HhHHHHHHHHHhccCcHHHHHHHHHHhHHhcCC
Q 007808 350 VDVFNSMDTKDLITWNTIISGLAMHGRGAGALSLFHEMKNAGEMPD-GITFIGILCACTHMGLVEEGLSYFQSMAMDYSI 428 (589)
Q Consensus 350 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 428 (589)
..+ -.+.+-.+.|..++.+-|.-.++.++|...|++..+. .|. ...|+.+..-|....+...|.+-++.+++ -.
T Consensus 320 ~~v-~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkL--Np~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvd--i~ 394 (559)
T KOG1155|consen 320 QNV-SNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKL--NPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVD--IN 394 (559)
T ss_pred HHH-HHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhc--CcchhHHHHHhhHHHHHhcccHHHHHHHHHHHh--cC
Confidence 222 2233446677788888899999999999999999984 554 45677788889999999999999999974 23
Q ss_pred CCChHHHHHHHHHHHhcCCHHHHHHHHhhC-CCCC-CHHHHHHHHHHHhcCCCHHHHHHHHHHHHccCCCCCcchHHHHH
Q 007808 429 VPQIEHYGCMVDLLARAGRLAEAVDFVKRM-PIEA-DAVIWANLLGSCRVYKNVELAELALERLTELEPKNPANFVMLSN 506 (589)
Q Consensus 429 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~ 506 (589)
+-|-..|-.|+.+|.-.+.+.=|+-+|+++ ..+| |...|.+|..+|.+.++.++|++.|++++..+..+..++..|++
T Consensus 395 p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~Lak 474 (559)
T KOG1155|consen 395 PRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALVRLAK 474 (559)
T ss_pred chhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHHHHHH
Confidence 446789999999999999999999999998 4556 78999999999999999999999999999988888899999999
Q ss_pred HHhhcCChHHHHHHHHHhhhCCCccCCccceeeeCCeeeeeccccCCCchHHHHHHHHHHHHcccCCCCcchHhhhhhc
Q 007808 507 IYGDLGRWKDVARIKVAMRDTGFKKLPGCSSIEVNEVVMLGCLSRELDRKSIVRAEANMIKLLPQNNHPLTFIVVIFST 585 (589)
Q Consensus 507 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 585 (589)
+|.+.++.++|...+++-.+.- ...| ...|+.-.+..-|++=+.++++.++|..+...+.++
T Consensus 475 Lye~l~d~~eAa~~yek~v~~~--~~eg---------------~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~~ 536 (559)
T KOG1155|consen 475 LYEELKDLNEAAQYYEKYVEVS--ELEG---------------EIDDETIKARLFLAEYFKKMKDFDEASYYATLVLKG 536 (559)
T ss_pred HHHHHHhHHHHHHHHHHHHHHH--Hhhc---------------ccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhcC
Confidence 9999999999999988774211 0000 356666777777999999999998888877766543
No 36
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.69 E-value=2.3e-14 Score=140.30 Aligned_cols=242 Identities=12% Similarity=0.038 Sum_probs=129.9
Q ss_pred HhcCChhHHHHHHHHHHHcCCCCChhHH--HHHHHHHHhcCChHHHHHHHhhCCC---CCcchHHHHHHHHHhCCChHHH
Q 007808 306 ARLGALDFSKWVHVYAEYNGYQGNVCVG--NALIDMYAKCGIIENAVDVFNSMDT---KDLITWNTIISGLAMHGRGAGA 380 (589)
Q Consensus 306 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~--~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A 380 (589)
.+.|+++.+...+.++.+.. |+.... ......+...|+++.|...++++.+ .++.....+...|.+.|++++|
T Consensus 129 ~~~g~~~~A~~~l~~A~~~~--~~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a 206 (398)
T PRK10747 129 QQRGDEARANQHLERAAELA--DNDQLPVEITRVRIQLARNENHAARHGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSL 206 (398)
T ss_pred HHCCCHHHHHHHHHHHHhcC--CcchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHH
Confidence 45555555555555554432 222111 1224455555555555555555442 2344555555666666666666
Q ss_pred HHHHHHHHHCCCCCCH-------hHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHH
Q 007808 381 LSLFHEMKNAGEMPDG-------ITFIGILCACTHMGLVEEGLSYFQSMAMDYSIVPQIEHYGCMVDLLARAGRLAEAVD 453 (589)
Q Consensus 381 ~~~~~~m~~~~~~p~~-------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 453 (589)
.+++..+.+.+..++. .+|..++.......+.+...++++.+.+. .+.++.....+...+...|+.++|.+
T Consensus 207 ~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~--~~~~~~~~~~~A~~l~~~g~~~~A~~ 284 (398)
T PRK10747 207 LDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQSRK--TRHQVALQVAMAEHLIECDDHDTAQQ 284 (398)
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCHH--HhCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 6666666654433221 12222233333334445555555555432 23455556666666666777777666
Q ss_pred HHhhC-CCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHccCCCCCcchHHHHHHHhhcCChHHHHHHHHHhhhCCCccC
Q 007808 454 FVKRM-PIEADAVIWANLLGSCRVYKNVELAELALERLTELEPKNPANFVMLSNIYGDLGRWKDVARIKVAMRDTGFKKL 532 (589)
Q Consensus 454 ~~~~~-~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 532 (589)
.+++. ..+|+.... ++.+....++.+++.+.+++..+..|+|+..+..++.++.+.|+|++|.+.++++.
T Consensus 285 ~L~~~l~~~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk~~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al------- 355 (398)
T PRK10747 285 IILDGLKRQYDERLV--LLIPRLKTNNPEQLEKVLRQQIKQHGDTPLLWSTLGQLLMKHGEWQEASLAFRAAL------- 355 (398)
T ss_pred HHHHHHhcCCCHHHH--HHHhhccCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH-------
Confidence 66655 333444222 22333344666666666666666667666666667777777777777777666664
Q ss_pred CccceeeeCCeeeeeccccCCCchHHHHHHHHHHHHcccCCCCcch
Q 007808 533 PGCSSIEVNEVVMLGCLSRELDRKSIVRAEANMIKLLPQNNHPLTF 578 (589)
Q Consensus 533 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~ 578 (589)
+.+|+++. +..|+.++.+.|+.++|.+.
T Consensus 356 -----------------~~~P~~~~-~~~La~~~~~~g~~~~A~~~ 383 (398)
T PRK10747 356 -----------------KQRPDAYD-YAWLADALDRLHKPEEAAAM 383 (398)
T ss_pred -----------------hcCCCHHH-HHHHHHHHHHcCCHHHHHHH
Confidence 45566544 33566666666666655443
No 37
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.68 E-value=2.3e-14 Score=141.08 Aligned_cols=284 Identities=11% Similarity=0.016 Sum_probs=200.2
Q ss_pred HhCCChHHHHHHHHHHHHcCCCCCcH-HHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHH
Q 007808 270 ANNGLFFEVLDAFKRMLTEGRVFPND-ATIVTVLSACARLGALDFSKWVHVYAEYNGYQGNVCVGNALIDMYAKCGIIEN 348 (589)
Q Consensus 270 ~~~g~~~~A~~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 348 (589)
...|+++.|.+.+.+..+.. |+. ..+.....+....|+.+.+..++..+.+....+...+.......+...|+++.
T Consensus 95 ~~~g~~~~A~~~l~~~~~~~---~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~ 171 (409)
T TIGR00540 95 LAEGDYAKAEKLIAKNADHA---AEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHA 171 (409)
T ss_pred HhCCCHHHHHHHHHHHhhcC---CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHH
Confidence 45688888888887776643 443 33344456677788888888888887765422222344445777888899999
Q ss_pred HHHHHhhCCC--C-CcchHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHhHHH-HHHHH---HhccCcHHHHHHHHHH
Q 007808 349 AVDVFNSMDT--K-DLITWNTIISGLAMHGRGAGALSLFHEMKNAGEMPDGITFI-GILCA---CTHMGLVEEGLSYFQS 421 (589)
Q Consensus 349 A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~-~l~~~---~~~~g~~~~A~~~~~~ 421 (589)
|...++.+.+ | ++..+..+...+.+.|++++|.+.+..+.+.++.+. ..+. .-..+ ....+..+++.+.+..
T Consensus 172 Al~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~-~~~~~l~~~a~~~~l~~~~~~~~~~~L~~ 250 (409)
T TIGR00540 172 ARHGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDD-EEFADLEQKAEIGLLDEAMADEGIDGLLN 250 (409)
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCH-HHHHHHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 9888888763 3 566788888999999999999999999998764432 2221 11111 1222333333334444
Q ss_pred hHHhc--CCCCChHHHHHHHHHHHhcCCHHHHHHHHhhC-CCCCCHHHH---HHHHHHHhcCCCHHHHHHHHHHHHccCC
Q 007808 422 MAMDY--SIVPQIEHYGCMVDLLARAGRLAEAVDFVKRM-PIEADAVIW---ANLLGSCRVYKNVELAELALERLTELEP 495 (589)
Q Consensus 422 ~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~---~~l~~~~~~~g~~~~A~~~~~~~~~~~p 495 (589)
+.... ..+.++..+..++..+...|+.++|.+.+++. ...||.... ..........++.+.+.+.+++.++..|
T Consensus 251 ~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p 330 (409)
T TIGR00540 251 WWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNVD 330 (409)
T ss_pred HHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhCC
Confidence 43321 11237788888999999999999999999988 445655421 2222333456888999999999999999
Q ss_pred CCC--cchHHHHHHHhhcCChHHHHHHHHHhhhCCCccCCccceeeeCCeeeeeccccCCCchHHHHHHHHHHHHcccCC
Q 007808 496 KNP--ANFVMLSNIYGDLGRWKDVARIKVAMRDTGFKKLPGCSSIEVNEVVMLGCLSRELDRKSIVRAEANMIKLLPQNN 573 (589)
Q Consensus 496 ~~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~ 573 (589)
+++ ....++++++.+.|+|++|.+.+++.. +++.+|++.. +.+|+.++.++|+.+
T Consensus 331 ~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~----------------------a~~~~p~~~~-~~~La~ll~~~g~~~ 387 (409)
T TIGR00540 331 DKPKCCINRALGQLLMKHGEFIEAADAFKNVA----------------------ACKEQLDAND-LAMAADAFDQAGDKA 387 (409)
T ss_pred CChhHHHHHHHHHHHHHcccHHHHHHHHHHhH----------------------HhhcCCCHHH-HHHHHHHHHHcCCHH
Confidence 999 889999999999999999999999532 1256787766 559999999999998
Q ss_pred CCcchHh
Q 007808 574 HPLTFIV 580 (589)
Q Consensus 574 ~~~~~~~ 580 (589)
+|.++..
T Consensus 388 ~A~~~~~ 394 (409)
T TIGR00540 388 EAAAMRQ 394 (409)
T ss_pred HHHHHHH
Confidence 8866554
No 38
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.68 E-value=1e-16 Score=150.09 Aligned_cols=256 Identities=16% Similarity=0.137 Sum_probs=112.3
Q ss_pred HHHHHHHhCCChHHHHHHHHHHHHcCCCCCcHHH-HHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhHHHHHHHHHHh
Q 007808 264 GLIGGYANNGLFFEVLDAFKRMLTEGRVFPNDAT-IVTVLSACARLGALDFSKWVHVYAEYNGYQGNVCVGNALIDMYAK 342 (589)
Q Consensus 264 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~-~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 342 (589)
.+...+.+.|++++|++++++..... .+|+... +..+...+...++.+.|...++.+...+. .+...+..++.. ..
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~-~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~-~~~~~~~~l~~l-~~ 89 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKI-APPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDK-ANPQDYERLIQL-LQ 89 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccc-ccccccccccccccccccccccccccccccccccccc-cccccccccccc-cc
Confidence 34666778888888888886554432 2344444 33444556677888888888888877653 356667777777 68
Q ss_pred cCChHHHHHHHhhCC--CCCcchHHHHHHHHHhCCChHHHHHHHHHHHHCC-CCCCHhHHHHHHHHHhccCcHHHHHHHH
Q 007808 343 CGIIENAVDVFNSMD--TKDLITWNTIISGLAMHGRGAGALSLFHEMKNAG-EMPDGITFIGILCACTHMGLVEEGLSYF 419 (589)
Q Consensus 343 ~g~~~~A~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~-~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 419 (589)
.+++++|.+++.... .+++..+..++..+...++++++..+++.+.... .+++...|..+...+.+.|+.++|++.+
T Consensus 90 ~~~~~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~ 169 (280)
T PF13429_consen 90 DGDPEEALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDY 169 (280)
T ss_dssp ----------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHH
T ss_pred cccccccccccccccccccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 889999998887764 3466778888889999999999999999987632 3456677888888999999999999999
Q ss_pred HHhHHhcCCCC-ChHHHHHHHHHHHhcCCHHHHHHHHhhCC--CCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHccCCC
Q 007808 420 QSMAMDYSIVP-QIEHYGCMVDLLARAGRLAEAVDFVKRMP--IEADAVIWANLLGSCRVYKNVELAELALERLTELEPK 496 (589)
Q Consensus 420 ~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 496 (589)
+++++. .| |......++..+...|+.+++.++++... .+.|+..+..+..++...|++++|...++++.+.+|+
T Consensus 170 ~~al~~---~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~ 246 (280)
T PF13429_consen 170 RKALEL---DPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPD 246 (280)
T ss_dssp HHHHHH----TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHc---CCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhcccccccccccccccccccccc
Confidence 999864 35 47788899999999999999888877662 2345566788899999999999999999999999999
Q ss_pred CCcchHHHHHHHhhcCChHHHHHHHHHhh
Q 007808 497 NPANFVMLSNIYGDLGRWKDVARIKVAMR 525 (589)
Q Consensus 497 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 525 (589)
|+.....+++++...|+.++|.++++++.
T Consensus 247 d~~~~~~~a~~l~~~g~~~~A~~~~~~~~ 275 (280)
T PF13429_consen 247 DPLWLLAYADALEQAGRKDEALRLRRQAL 275 (280)
T ss_dssp -HHHHHHHHHHHT----------------
T ss_pred ccccccccccccccccccccccccccccc
Confidence 99999999999999999999999988763
No 39
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.67 E-value=1.8e-12 Score=117.84 Aligned_cols=408 Identities=11% Similarity=0.107 Sum_probs=242.2
Q ss_pred ccCCchHHHHHHHHHHhCCCCCccchHHHHHHHH--ccCCh-------------------------hHHHHHhhcCCCCC
Q 007808 12 LETTKHLHQIQTQVVTSGLEKSDYITPRIITACA--QLKQM-------------------------TYARKMFDKITDQN 64 (589)
Q Consensus 12 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~--~~~~~-------------------------~~A~~~~~~~~~~~ 64 (589)
-+...+..-+++.|.+.|++.+..+-..|.+..+ ...++ +-|.-+|+..+ .+
T Consensus 128 ~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~S~~sWK~G~vAdL~~E~~P-KT 206 (625)
T KOG4422|consen 128 SREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGEDSTSSWKSGAVADLLFETLP-KT 206 (625)
T ss_pred hcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccccccccccccccHHHHHHhhcC-CC
Confidence 3445556789999999999998877766655432 11122 12222333222 46
Q ss_pred cccHHHHHHHHHcCCChhHHHHHHHHhhhCCCCCCcccHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchHHHhHHHHH
Q 007808 65 VVSWNAMFNGYAQNEFHRTVVVLFTQMKKLDAMPNCFTFPIVLKSCVKINALREGEELHCLVLKNGFRANIFVGTALIEL 144 (589)
Q Consensus 65 ~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 144 (589)
..+|..+|.++++-...+.|.+++++-.....+.+..+||.+|.+-.-.. ..+++.+|....+.||..|+|+++++
T Consensus 207 ~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~----~K~Lv~EMisqkm~Pnl~TfNalL~c 282 (625)
T KOG4422|consen 207 DETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSV----GKKLVAEMISQKMTPNLFTFNALLSC 282 (625)
T ss_pred chhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhc----cHHHHHHHHHhhcCCchHhHHHHHHH
Confidence 67899999999999999999999999988877899999999998764332 37889999999999999999999999
Q ss_pred HHcCCChHHHH----HHHccCC----CCCeehHHHHHHHHHhCCCHHHH-HHHHHhCCCCChhHHHHHHHHHhcCCChHH
Q 007808 145 YSTGKAIEAAY----KVFGEMD----ERNVVVWTSMINGYISCGDIVSA-RCLFELAPERDVILWNTIVSGYIDVRNMIE 215 (589)
Q Consensus 145 ~~~~g~~~~A~----~~~~~~~----~~~~~~~~~l~~~~~~~g~~~~a-~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 215 (589)
.++.|+++.|. +++.+|+ +|...+|..+|..+++.++..+. ..++..+. +.+ .|
T Consensus 283 ~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~-----------N~l--tG---- 345 (625)
T KOG4422|consen 283 AAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQ-----------NSL--TG---- 345 (625)
T ss_pred HHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHH-----------Hhh--cc----
Confidence 99999887654 4455554 37777888888888877776542 22222111 000 00
Q ss_pred HHHHhcccCCCChhhHHHHHHHHHhcCCHHHHHHHHhhCCC--------C---CchhHHHHHHHHHhCCChHHHHHHHHH
Q 007808 216 ARKLFDQMPKKDVISWNTMLSGYANNGDVEECKRLFEEMPE--------R---NVFSWNGLIGGYANNGLFFEVLDAFKR 284 (589)
Q Consensus 216 a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--------~---~~~~~~~l~~~~~~~g~~~~A~~~~~~ 284 (589)
+-|+-....|...|..-+..|.+..+.+-|.++-.-... + ...-|..+....|+....+.-+.+|+.
T Consensus 346 --K~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~ 423 (625)
T KOG4422|consen 346 --KTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYED 423 (625)
T ss_pred --CcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 000000001223333344444444444444443332221 1 112345566777788888888888888
Q ss_pred HHHcCCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHhhCCCCCcchH
Q 007808 285 MLTEGRVFPNDATIVTVLSACARLGALDFSKWVHVYAEYNGYQGNVCVGNALIDMYAKCGIIENAVDVFNSMDTKDLITW 364 (589)
Q Consensus 285 ~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 364 (589)
|+..- +.|+..+...++++....+.++-..+++..++..|...+.....-++..+++.. ..|+....
T Consensus 424 lVP~~-y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k------------~hp~tp~r 490 (625)
T KOG4422|consen 424 LVPSA-YFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDK------------LHPLTPER 490 (625)
T ss_pred hccce-ecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCC------------CCCCChHH
Confidence 88877 778888888888888888888888888888887764433332222222222211 01211111
Q ss_pred HHHHHHHHhC-CChHH-HHHHHHHHHHCCCCCCHhHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHH---HH
Q 007808 365 NTIISGLAMH-GRGAG-ALSLFHEMKNAGEMPDGITFIGILCACTHMGLVEEGLSYFQSMAMDYSIVPQIEHYGC---MV 439 (589)
Q Consensus 365 ~~l~~~~~~~-~~~~~-A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~---l~ 439 (589)
..+-....+. -++.+ ....-.+|.+..++ ....+.++..+.+.|+.++|.+++..+.++..-.|.....|+ ++
T Consensus 491 ~Ql~~~~ak~aad~~e~~e~~~~R~r~~~~~--~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~ 568 (625)
T KOG4422|consen 491 EQLQVAFAKCAADIKEAYESQPIRQRAQDWP--ATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELM 568 (625)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHhccCC--hhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHH
Confidence 1111111110 01111 12222344443333 334555555566777777777777776554343444444443 33
Q ss_pred HHHHhcCCHHHHHHHHhhC
Q 007808 440 DLLARAGRLAEAVDFVKRM 458 (589)
Q Consensus 440 ~~~~~~g~~~~A~~~~~~~ 458 (589)
+.-.+.+....|+.+++-|
T Consensus 569 d~a~~~~spsqA~~~lQ~a 587 (625)
T KOG4422|consen 569 DSAKVSNSPSQAIEVLQLA 587 (625)
T ss_pred HHHHhcCCHHHHHHHHHHH
Confidence 4445556666666666655
No 40
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.67 E-value=1.6e-13 Score=136.04 Aligned_cols=348 Identities=14% Similarity=0.149 Sum_probs=201.1
Q ss_pred hCCCHHHHHHHHHhCCCC---ChhHHHHHHHHHhcCCChHHHHHHhcccC---CCChhhHHHHHHHHHhcCCHHHHHHHH
Q 007808 178 SCGDIVSARCLFELAPER---DVILWNTIVSGYIDVRNMIEARKLFDQMP---KKDVISWNTMLSGYANNGDVEECKRLF 251 (589)
Q Consensus 178 ~~g~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~ 251 (589)
..|++++|.+++.++.+. ....|..|..+|-..|+.+++...+-.+. ..|...|..+.....+.|++++|.-.|
T Consensus 151 arg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~i~qA~~cy 230 (895)
T KOG2076|consen 151 ARGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGNINQARYCY 230 (895)
T ss_pred HhCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcccHHHHHHHH
Confidence 336666666665555433 33455555555555555555554443221 234455555555555555555555555
Q ss_pred hhCCCCCch---hHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCC
Q 007808 252 EEMPERNVF---SWNGLIGGYANNGLFFEVLDAFKRMLTEGRVFPNDATIVTVLSACARLGALDFSKWVHVYAEYNGYQG 328 (589)
Q Consensus 252 ~~~~~~~~~---~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 328 (589)
.+..+.++. ..---...|-+.|+...|.+.|.++.... .+.|..-+..
T Consensus 231 ~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~-p~~d~er~~d---------------------------- 281 (895)
T KOG2076|consen 231 SRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLD-PPVDIERIED---------------------------- 281 (895)
T ss_pred HHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhC-CchhHHHHHH----------------------------
Confidence 555542222 22222344555555555555555555543 1111111111
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHhhCCC-----CCcchHHHHHHHHHhCCChHHHHHHHHHHHHCC------------
Q 007808 329 NVCVGNALIDMYAKCGIIENAVDVFNSMDT-----KDLITWNTIISGLAMHGRGAGALSLFHEMKNAG------------ 391 (589)
Q Consensus 329 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~------------ 391 (589)
.....++.+...++.+.|.+.++.... -+...++.++..|.+...++.|......+....
T Consensus 282 ---~i~~~~~~~~~~~~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~ 358 (895)
T KOG2076|consen 282 ---LIRRVAHYFITHNERERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDE 358 (895)
T ss_pred ---HHHHHHHHHHHhhHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhh
Confidence 111123333444444455554444332 133345555555555555665555555554411
Q ss_pred ---------------CCCCHhHHHHHHHHHhccCcHHHHHHHHHHhHHhcCC--CCChHHHHHHHHHHHhcCCHHHHHHH
Q 007808 392 ---------------EMPDGITFIGILCACTHMGLVEEGLSYFQSMAMDYSI--VPQIEHYGCMVDLLARAGRLAEAVDF 454 (589)
Q Consensus 392 ---------------~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~ 454 (589)
+.++... .-+.-++.+....+....+......+ .+ .-+...|.-+.++|...|++.+|+.+
T Consensus 359 ~~~~~~~~~~~~~~~~s~~l~v-~rl~icL~~L~~~e~~e~ll~~l~~~-n~~~~d~~dL~~d~a~al~~~~~~~~Al~~ 436 (895)
T KOG2076|consen 359 RRREEPNALCEVGKELSYDLRV-IRLMICLVHLKERELLEALLHFLVED-NVWVSDDVDLYLDLADALTNIGKYKEALRL 436 (895)
T ss_pred hccccccccccCCCCCCccchh-HhHhhhhhcccccchHHHHHHHHHHh-cCChhhhHHHHHHHHHHHHhcccHHHHHHH
Confidence 2222222 11222333444444433333333332 42 33467888899999999999999999
Q ss_pred HhhCCCC-C--CHHHHHHHHHHHhcCCCHHHHHHHHHHHHccCCCCCcchHHHHHHHhhcCChHHHHHHHHHhhhCCCcc
Q 007808 455 VKRMPIE-A--DAVIWANLLGSCRVYKNVELAELALERLTELEPKNPANFVMLSNIYGDLGRWKDVARIKVAMRDTGFKK 531 (589)
Q Consensus 455 ~~~~~~~-p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 531 (589)
+..+... + +...|..+..+|...|.+++|.+.|++++...|++..+...|+.++.+.|+.++|.+.++.+. .|
T Consensus 437 l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~----~~ 512 (895)
T KOG2076|consen 437 LSPITNREGYQNAFVWYKLARCYMELGEYEEAIEFYEKVLILAPDNLDARITLASLYQQLGNHEKALETLEQII----NP 512 (895)
T ss_pred HHHHhcCccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHhccc----CC
Confidence 9998322 2 456888899999999999999999999999999999999999999999999999999999884 23
Q ss_pred CCccceeeeCCeeeeeccccCCCchHHHHHHHHHHHHcccCCC
Q 007808 532 LPGCSSIEVNEVVMLGCLSRELDRKSIVRAEANMIKLLPQNNH 574 (589)
Q Consensus 532 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~ 574 (589)
++- ... + ..-+.+.-+..+...+|...|+.++
T Consensus 513 D~~--------~~e--~-~a~~~e~ri~~~r~d~l~~~gk~E~ 544 (895)
T KOG2076|consen 513 DGR--------NAE--A-CAWEPERRILAHRCDILFQVGKREE 544 (895)
T ss_pred Ccc--------chh--h-ccccHHHHHHHHHHHHHHHhhhHHH
Confidence 311 000 0 1224455666788888888888866
No 41
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.67 E-value=1.5e-12 Score=122.67 Aligned_cols=280 Identities=14% Similarity=0.035 Sum_probs=229.1
Q ss_pred CchhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhHHHHHH
Q 007808 258 NVFSWNGLIGGYANNGLFFEVLDAFKRMLTEGRVFPNDATIVTVLSACARLGALDFSKWVHVYAEYNGYQGNVCVGNALI 337 (589)
Q Consensus 258 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 337 (589)
++........-+...+++.+..++++...+.. ++....+..-|.++...|+..+-..+-..+++. .|....+|-++.
T Consensus 243 ~~dll~~~ad~~y~~c~f~~c~kit~~lle~d--pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~-yP~~a~sW~aVg 319 (611)
T KOG1173|consen 243 NLDLLAEKADRLYYGCRFKECLKITEELLEKD--PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDL-YPSKALSWFAVG 319 (611)
T ss_pred cHHHHHHHHHHHHHcChHHHHHHHhHHHHhhC--CCCcchHHHHHHHHHHhcccchHHHHHHHHHHh-CCCCCcchhhHH
Confidence 44455556667888899999999999999875 455555666666888888888777777777765 467788999999
Q ss_pred HHHHhcCChHHHHHHHhhCCCCCc---chHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCcHHH
Q 007808 338 DMYAKCGIIENAVDVFNSMDTKDL---ITWNTIISGLAMHGRGAGALSLFHEMKNAGEMPDGITFIGILCACTHMGLVEE 414 (589)
Q Consensus 338 ~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~ 414 (589)
-.|...|+..+|++.|.+...-|. ..|-.+...|.-.|..++|+..+....+. ++-...-+..+..-|.+.++.+.
T Consensus 320 ~YYl~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl-~~G~hlP~LYlgmey~~t~n~kL 398 (611)
T KOG1173|consen 320 CYYLMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARL-MPGCHLPSLYLGMEYMRTNNLKL 398 (611)
T ss_pred HHHHHhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHh-ccCCcchHHHHHHHHHHhccHHH
Confidence 999999999999999998775433 58999999999999999999999888773 22223334456667888999999
Q ss_pred HHHHHHHhHHhcCCCC-ChHHHHHHHHHHHhcCCHHHHHHHHhhCC-----CCC----CHHHHHHHHHHHhcCCCHHHHH
Q 007808 415 GLSYFQSMAMDYSIVP-QIEHYGCMVDLLARAGRLAEAVDFVKRMP-----IEA----DAVIWANLLGSCRVYKNVELAE 484 (589)
Q Consensus 415 A~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-----~~p----~~~~~~~l~~~~~~~g~~~~A~ 484 (589)
|.++|.++. ++-| |+..++-+.-.....+.+.+|..+|+... +.+ -..+++.|..+|.+.+.+++|+
T Consensus 399 Ae~Ff~~A~---ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI 475 (611)
T KOG1173|consen 399 AEKFFKQAL---AIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAI 475 (611)
T ss_pred HHHHHHHHH---hcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHH
Confidence 999999886 5555 46677777777778899999999988762 111 3456888999999999999999
Q ss_pred HHHHHHHccCCCCCcchHHHHHHHhhcCChHHHHHHHHHhhhCCCccCCccceeeeCCeeeeeccccCCCchHHHHHHHH
Q 007808 485 LALERLTELEPKNPANFVMLSNIYGDLGRWKDVARIKVAMRDTGFKKLPGCSSIEVNEVVMLGCLSRELDRKSIVRAEAN 564 (589)
Q Consensus 485 ~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~ 564 (589)
..+++++.+.|.++.++..++-+|...|+++.|+..+.+.. -++|++..+-..|+.
T Consensus 476 ~~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL------------------------~l~p~n~~~~~lL~~ 531 (611)
T KOG1173|consen 476 DYYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKAL------------------------ALKPDNIFISELLKL 531 (611)
T ss_pred HHHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHH------------------------hcCCccHHHHHHHHH
Confidence 99999999999999999999999999999999999998885 688999999999998
Q ss_pred HHHH
Q 007808 565 MIKL 568 (589)
Q Consensus 565 ~~~~ 568 (589)
+...
T Consensus 532 aie~ 535 (611)
T KOG1173|consen 532 AIED 535 (611)
T ss_pred HHHh
Confidence 8765
No 42
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.66 E-value=2.6e-13 Score=124.49 Aligned_cols=319 Identities=13% Similarity=0.099 Sum_probs=231.2
Q ss_pred CChhhHHHHHHHHHhcCCHHHHHHHHhhCCCCCchhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCcHHHH--HHHHH
Q 007808 226 KDVISWNTMLSGYANNGDVEECKRLFEEMPERNVFSWNGLIGGYANNGLFFEVLDAFKRMLTEGRVFPNDATI--VTVLS 303 (589)
Q Consensus 226 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~--~~l~~ 303 (589)
.|...+-...-.+.+.|..+.|++.|......-+..|.+-+....-..+ ++........+ +.|...+ -.+..
T Consensus 162 ~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~P~~W~AWleL~~lit~----~e~~~~l~~~l--~~~~h~M~~~F~~~ 235 (559)
T KOG1155|consen 162 KDEFLLYLYGVVLKELGLLSLAIDSFVEVVNRYPWFWSAWLELSELITD----IEILSILVVGL--PSDMHWMKKFFLKK 235 (559)
T ss_pred chhHHHHHHHHHHHhhchHHHHHHHHHHHHhcCCcchHHHHHHHHhhch----HHHHHHHHhcC--cccchHHHHHHHHH
Confidence 4444444455566778888889888888776444444433322111112 22222222222 2221111 12334
Q ss_pred HHHhcCChhHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHhhCCCCCc------chHHHHHHHHHhCCCh
Q 007808 304 ACARLGALDFSKWVHVYAEYNGYQGNVCVGNALIDMYAKCGIIENAVDVFNSMDTKDL------ITWNTIISGLAMHGRG 377 (589)
Q Consensus 304 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~------~~~~~l~~~~~~~~~~ 377 (589)
++......+++.+-.......|++.+...-+....+.-...+++.|+.+|+++.+.|+ .+|...+- .++.+.
T Consensus 236 a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LY--v~~~~s 313 (559)
T KOG1155|consen 236 AYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLY--VKNDKS 313 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHH--HHhhhH
Confidence 5666667888888888899999988887777777778888999999999999986544 45555443 333222
Q ss_pred HHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHHhcCCHHHHHHHHh
Q 007808 378 AGALSLFHEMKNAGEMPDGITFIGILCACTHMGLVEEGLSYFQSMAMDYSIVPQ-IEHYGCMVDLLARAGRLAEAVDFVK 456 (589)
Q Consensus 378 ~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~ 456 (589)
.+..+.+-.-.=-+--+.|...+.+.|+-.++.++|..+|++.++ +.|. ...|..+++-|...++...|++-++
T Consensus 314 --kLs~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALk---LNp~~~~aWTLmGHEyvEmKNt~AAi~sYR 388 (559)
T KOG1155|consen 314 --KLSYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALK---LNPKYLSAWTLMGHEYVEMKNTHAAIESYR 388 (559)
T ss_pred --HHHHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHh---cCcchhHHHHHhhHHHHHhcccHHHHHHHH
Confidence 222222211110122345777888889999999999999999974 4455 5678889999999999999999999
Q ss_pred hC-CCCC-CHHHHHHHHHHHhcCCCHHHHHHHHHHHHccCCCCCcchHHHHHHHhhcCChHHHHHHHHHhhhCCCccCCc
Q 007808 457 RM-PIEA-DAVIWANLLGSCRVYKNVELAELALERLTELEPKNPANFVMLSNIYGDLGRWKDVARIKVAMRDTGFKKLPG 534 (589)
Q Consensus 457 ~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 534 (589)
++ .+.| |...|-.+.++|...+...-|+-+|+++.++.|+|+..|..||++|.+.++.++|++.|++..
T Consensus 389 rAvdi~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai--------- 459 (559)
T KOG1155|consen 389 RAVDINPRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAI--------- 459 (559)
T ss_pred HHHhcCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHH---------
Confidence 98 5555 889999999999999999999999999999999999999999999999999999999999986
Q ss_pred cceeeeCCeeeeeccccCCCchHHHHHHHHHHHHcccCCCCcchHhh
Q 007808 535 CSSIEVNEVVMLGCLSRELDRKSIVRAEANMIKLLPQNNHPLTFIVV 581 (589)
Q Consensus 535 ~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 581 (589)
....-+..++..||.+|.++++..+|..+..+
T Consensus 460 ---------------~~~dte~~~l~~LakLye~l~d~~eAa~~yek 491 (559)
T KOG1155|consen 460 ---------------LLGDTEGSALVRLAKLYEELKDLNEAAQYYEK 491 (559)
T ss_pred ---------------hccccchHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 23334679999999999999999888766543
No 43
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.65 E-value=5.2e-12 Score=116.32 Aligned_cols=472 Identities=13% Similarity=0.102 Sum_probs=334.1
Q ss_pred HccCChhHHHHHhhcCCC---CCcccHHHHHHHHHcCCChhHHHHHHHHhhhCCCCCCcc-cHHHHHHHHhccCChHHHH
Q 007808 45 AQLKQMTYARKMFDKITD---QNVVSWNAMFNGYAQNEFHRTVVVLFTQMKKLDAMPNCF-TFPIVLKSCVKINALREGE 120 (589)
Q Consensus 45 ~~~~~~~~A~~~~~~~~~---~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~-~~~~ll~~~~~~~~~~~a~ 120 (589)
...+++..|+.+|+.... .++..|-.-+..=.+++.+..|..++++.... -|-.. .|-..+..--..|+...|.
T Consensus 84 esq~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~--lPRVdqlWyKY~ymEE~LgNi~gaR 161 (677)
T KOG1915|consen 84 ESQKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTI--LPRVDQLWYKYIYMEEMLGNIAGAR 161 (677)
T ss_pred HhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHh--cchHHHHHHHHHHHHHHhcccHHHH
Confidence 345678888999988765 56677888888888999999999999988754 33332 3444444445678999999
Q ss_pred HHHHHHHHhCCCCchHHHhHHHHHHHcCCChHHHHHHHccCC--CCCeehHHHHHHHHHhCCCHHHHHHHHHhCCCC---
Q 007808 121 ELHCLVLKNGFRANIFVGTALIELYSTGKAIEAAYKVFGEMD--ERNVVVWTSMINGYISCGDIVSARCLFELAPER--- 195 (589)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--- 195 (589)
++|+...+ ..|+...|.+.|+.=.+...++.|..++++.. .|++.+|.-...---+.|....+..+|+...+.
T Consensus 162 qiferW~~--w~P~eqaW~sfI~fElRykeieraR~IYerfV~~HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~~~ 239 (677)
T KOG1915|consen 162 QIFERWME--WEPDEQAWLSFIKFELRYKEIERARSIYERFVLVHPKVSNWIKYARFEEKHGNVALARSVYERAIEFLGD 239 (677)
T ss_pred HHHHHHHc--CCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHheecccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhh
Confidence 99998877 57899999999999999999999999999875 588888988888888999999998888876643
Q ss_pred ---ChhHHHHHHHHHhcCCChHHHHHHhcccCC--CC---hhhHHHHHHHHHhcCCHHHHHHHH--------hhCCC---
Q 007808 196 ---DVILWNTIVSGYIDVRNMIEARKLFDQMPK--KD---VISWNTMLSGYANNGDVEECKRLF--------EEMPE--- 256 (589)
Q Consensus 196 ---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~---~~~~~~l~~~~~~~~~~~~A~~~~--------~~~~~--- 256 (589)
+...+.+....-.++..++.|.-+|+-..+ |. ...|..+...=-+-|+.....+.. +.+..
T Consensus 240 d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~np 319 (677)
T KOG1915|consen 240 DEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKNP 319 (677)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhCC
Confidence 223444555444566778888887776654 32 344555554444556654444332 22222
Q ss_pred CCchhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCcHH-------HHHHHHHHH---HhcCChhHHHHHHHHHHHcCC
Q 007808 257 RNVFSWNGLIGGYANNGLFFEVLDAFKRMLTEGRVFPNDA-------TIVTVLSAC---ARLGALDFSKWVHVYAEYNGY 326 (589)
Q Consensus 257 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~-------~~~~l~~~~---~~~~~~~~a~~~~~~~~~~~~ 326 (589)
-|..+|-..++.--..|+.+...++|+.++.. ++|-.. .|.-+=-++ ....+.+.+.++++..++. +
T Consensus 320 ~nYDsWfdylrL~e~~g~~~~Ire~yErAIan--vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~l-I 396 (677)
T KOG1915|consen 320 YNYDSWFDYLRLEESVGDKDRIRETYERAIAN--VPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDL-I 396 (677)
T ss_pred CCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc--CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh-c
Confidence 26678888888888889999999999999886 455321 122111111 3467888999999988883 4
Q ss_pred CCChhHHHHHHHH----HHhcCChHHHHHHHhhCCC--CCcchHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHhHHH
Q 007808 327 QGNVCVGNALIDM----YAKCGIIENAVDVFNSMDT--KDLITWNTIISGLAMHGRGAGALSLFHEMKNAGEMPDGITFI 400 (589)
Q Consensus 327 ~~~~~~~~~l~~~----~~~~g~~~~A~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~ 400 (589)
|....+|..+--. ..++.++..|.+++..... |...+|...|..-.+.++++.+..++++.++-+ +-|..+|.
T Consensus 397 PHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~-Pe~c~~W~ 475 (677)
T KOG1915|consen 397 PHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFS-PENCYAWS 475 (677)
T ss_pred CcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-hHhhHHHH
Confidence 5455555544333 3567899999999988773 566788888888889999999999999999853 33677888
Q ss_pred HHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHhhC-CCCCCHHHHHHHHHHHh----
Q 007808 401 GILCACTHMGLVEEGLSYFQSMAMDYSIVPQIEHYGCMVDLLARAGRLAEAVDFVKRM-PIEADAVIWANLLGSCR---- 475 (589)
Q Consensus 401 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~---- 475 (589)
.....-...|+.+.|..+|+-++....+......|.+.|+.=...|.+++|..+++++ ...+-...|-++..--.
T Consensus 476 kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt~h~kvWisFA~fe~s~~~ 555 (677)
T KOG1915|consen 476 KYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRTQHVKVWISFAKFEASASE 555 (677)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhcccchHHHhHHHHhccccc
Confidence 8888778889999999999988765333334567888888888999999999999988 33445556655553222
Q ss_pred -cCC-----------CHHHHHHHHHHHHc----cCCCCC--cchHHHHHHHhhcCChHHHHHHHHHh
Q 007808 476 -VYK-----------NVELAELALERLTE----LEPKNP--ANFVMLSNIYGDLGRWKDVARIKVAM 524 (589)
Q Consensus 476 -~~g-----------~~~~A~~~~~~~~~----~~p~~~--~~~~~l~~~~~~~g~~~~A~~~~~~~ 524 (589)
+.+ ....|..+|+++.. ..|... ..+..+-++-...|...+...+-++|
T Consensus 556 ~~~~~~~~~~e~~~~~~~~AR~iferAn~~~k~~~~KeeR~~LLEaw~~~E~~~G~~~d~~~V~s~m 622 (677)
T KOG1915|consen 556 GQEDEDLAELEITDENIKRARKIFERANTYLKESTPKEERLMLLEAWKNMEETFGTEGDVERVQSKM 622 (677)
T ss_pred cccccchhhhhcchhHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCchhhHHHHHHhc
Confidence 334 56788888988876 233211 12223333344566666666665555
No 44
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.65 E-value=7.9e-12 Score=115.15 Aligned_cols=452 Identities=12% Similarity=0.064 Sum_probs=336.9
Q ss_pred CcccHHHHHHHHHcCCChhHHHHHHHHhhhCCCCCCcccHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchHHHhHHHH
Q 007808 64 NVVSWNAMFNGYAQNEFHRTVVVLFTQMKKLDAMPNCFTFPIVLKSCVKINALREGEELHCLVLKNGFRANIFVGTALIE 143 (589)
Q Consensus 64 ~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 143 (589)
+...|-.-...=..++++..|..+|++....+ .-+...|..-+..-.+...+..|..+++..+..=+..|..-|. .+-
T Consensus 72 ~~~~WikYaqwEesq~e~~RARSv~ERALdvd-~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWyK-Y~y 149 (677)
T KOG1915|consen 72 NMQVWIKYAQWEESQKEIQRARSVFERALDVD-YRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWYK-YIY 149 (677)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcc-cccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHHH-HHH
Confidence 44556666666667889999999999998755 3456667777777788999999999999998865444444443 333
Q ss_pred HHHcCCChHHHHHHHccCCC--CCeehHHHHHHHHHhCCCHHHHHHHHHhCC--CCChhHHHHHHHHHhcCCChHHHHHH
Q 007808 144 LYSTGKAIEAAYKVFGEMDE--RNVVVWTSMINGYISCGDIVSARCLFELAP--ERDVILWNTIVSGYIDVRNMIEARKL 219 (589)
Q Consensus 144 ~~~~~g~~~~A~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~a~~~ 219 (589)
+=-..|++..|.++|++..+ |+..+|.+.|+.-.+...++.|..+|++.. .|++.+|.-....-.+.|....+..+
T Consensus 150 mEE~LgNi~gaRqiferW~~w~P~eqaW~sfI~fElRykeieraR~IYerfV~~HP~v~~wikyarFE~k~g~~~~aR~V 229 (677)
T KOG1915|consen 150 MEEMLGNIAGARQIFERWMEWEPDEQAWLSFIKFELRYKEIERARSIYERFVLVHPKVSNWIKYARFEEKHGNVALARSV 229 (677)
T ss_pred HHHHhcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHheecccHHHHHHHHHHHHhcCcHHHHHHH
Confidence 44567999999999999875 999999999999999999999999999864 68999999888888999999999999
Q ss_pred hcccCC------CChhhHHHHHHHHHhcCCHHHHHHHHhhCCC--CC---chhHHHHHHHHHhCCChHHHHH--------
Q 007808 220 FDQMPK------KDVISWNTMLSGYANNGDVEECKRLFEEMPE--RN---VFSWNGLIGGYANNGLFFEVLD-------- 280 (589)
Q Consensus 220 ~~~~~~------~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~---~~~~~~l~~~~~~~g~~~~A~~-------- 280 (589)
|+...+ .+...+.++...=.++..++.|.-+|+-..+ |. ...|..+...=-+-|+.....+
T Consensus 230 yerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~ 309 (677)
T KOG1915|consen 230 YERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKF 309 (677)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhh
Confidence 998875 2344566666666667888999988887665 22 3344444443344455443333
Q ss_pred HHHHHHHcCCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCh--hHHHHHHHH--------HHhcCChHHHH
Q 007808 281 AFKRMLTEGRVFPNDATIVTVLSACARLGALDFSKWVHVYAEYNGYQGNV--CVGNALIDM--------YAKCGIIENAV 350 (589)
Q Consensus 281 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~l~~~--------~~~~g~~~~A~ 350 (589)
-|+.++..+ +.|..++-..++.-...|+.+...++|++++.. +||-. ..+...|-. -....+++.+.
T Consensus 310 qYE~~v~~n--p~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr 386 (677)
T KOG1915|consen 310 QYEKEVSKN--PYNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVERTR 386 (677)
T ss_pred HHHHHHHhC--CCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence 256666665 567788888888888899999999999999875 34421 112222211 13467888999
Q ss_pred HHHhhCCC---CCcchHHH----HHHHHHhCCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCcHHHHHHHHHHhH
Q 007808 351 DVFNSMDT---KDLITWNT----IISGLAMHGRGAGALSLFHEMKNAGEMPDGITFIGILCACTHMGLVEEGLSYFQSMA 423 (589)
Q Consensus 351 ~~~~~~~~---~~~~~~~~----l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 423 (589)
++|+...+ ....||.. ...-..++.+...|.+++-..+ |..|-..+|...|..-.+.++++....++++.+
T Consensus 387 ~vyq~~l~lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AI--G~cPK~KlFk~YIelElqL~efDRcRkLYEkfl 464 (677)
T KOG1915|consen 387 QVYQACLDLIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAI--GKCPKDKLFKGYIELELQLREFDRCRKLYEKFL 464 (677)
T ss_pred HHHHHHHhhcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHh--ccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 99986653 34444444 3444557889999999998776 578999999999999999999999999999997
Q ss_pred HhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCC----HHHHHHHHHHHhcCCCHHHHHHHHHHHHccCCCCCc
Q 007808 424 MDYSIVPQIEHYGCMVDLLARAGRLAEAVDFVKRMPIEAD----AVIWANLLGSCRVYKNVELAELALERLTELEPKNPA 499 (589)
Q Consensus 424 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 499 (589)
. --+-+..+|......=...|+.+.|..+|+-+...|. ...|.+.+..-...|.+++|..+|++.++..+. ..
T Consensus 465 e--~~Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt~h-~k 541 (677)
T KOG1915|consen 465 E--FSPENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRTQH-VK 541 (677)
T ss_pred h--cChHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhccc-ch
Confidence 4 2233577888888888899999999999998854553 344556666667899999999999999998887 44
Q ss_pred chHHHHHHHh-----hcC-----------ChHHHHHHHHHhh
Q 007808 500 NFVMLSNIYG-----DLG-----------RWKDVARIKVAMR 525 (589)
Q Consensus 500 ~~~~l~~~~~-----~~g-----------~~~~A~~~~~~~~ 525 (589)
+|.+.+..-. +.| ....|..+|+++.
T Consensus 542 vWisFA~fe~s~~~~~~~~~~~~~e~~~~~~~~AR~iferAn 583 (677)
T KOG1915|consen 542 VWISFAKFEASASEGQEDEDLAELEITDENIKRARKIFERAN 583 (677)
T ss_pred HHHhHHHHhccccccccccchhhhhcchhHHHHHHHHHHHHH
Confidence 7777766544 344 4556777777663
No 45
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.63 E-value=1.2e-13 Score=127.56 Aligned_cols=213 Identities=12% Similarity=0.048 Sum_probs=168.7
Q ss_pred HHHhcCChHHHHHHHhhCCC--C-CcchHHHHHHHHHhCCChHHHHHHHHHHHHCCCCC-CHhHHHHHHHHHhccCcHHH
Q 007808 339 MYAKCGIIENAVDVFNSMDT--K-DLITWNTIISGLAMHGRGAGALSLFHEMKNAGEMP-DGITFIGILCACTHMGLVEE 414 (589)
Q Consensus 339 ~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~g~~~~ 414 (589)
.+.-.|+.-.|..-|+...+ | ++..|--+...|....+.++-...|.+..+. .| |+.+|..-.+.+.-.+++++
T Consensus 335 F~fL~g~~~~a~~d~~~~I~l~~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~l--dp~n~dvYyHRgQm~flL~q~e~ 412 (606)
T KOG0547|consen 335 FHFLKGDSLGAQEDFDAAIKLDPAFNSLYIKRAAAYADENQSEKMWKDFNKAEDL--DPENPDVYYHRGQMRFLLQQYEE 412 (606)
T ss_pred hhhhcCCchhhhhhHHHHHhcCcccchHHHHHHHHHhhhhccHHHHHHHHHHHhc--CCCCCchhHhHHHHHHHHHHHHH
Confidence 34456777888888877663 2 3344777888899999999999999988874 44 66778888888888889999
Q ss_pred HHHHHHHhHHhcCCCCC-hHHHHHHHHHHHhcCCHHHHHHHHhhC--CCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Q 007808 415 GLSYFQSMAMDYSIVPQ-IEHYGCMVDLLARAGRLAEAVDFVKRM--PIEADAVIWANLLGSCRVYKNVELAELALERLT 491 (589)
Q Consensus 415 A~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 491 (589)
|..-|++.+ .+.|+ ...|-.+.-+..+.+++++++..|++. .++.-+..|+.....+..++++++|.+.|++++
T Consensus 413 A~aDF~Kai---~L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai 489 (606)
T KOG0547|consen 413 AIADFQKAI---SLDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKKFPNCPEVYNLFAEILTDQQQFDKAVKQYDKAI 489 (606)
T ss_pred HHHHHHHHh---hcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHhhHHhHHHHHHHHHHHH
Confidence 999999886 44554 556666777777888999999999988 355556778888888999999999999999999
Q ss_pred ccCCC------CCcchHHHHHHHhh-cCChHHHHHHHHHhhhCCCccCCccceeeeCCeeeeeccccCCCchHHHHHHHH
Q 007808 492 ELEPK------NPANFVMLSNIYGD-LGRWKDVARIKVAMRDTGFKKLPGCSSIEVNEVVMLGCLSRELDRKSIVRAEAN 564 (589)
Q Consensus 492 ~~~p~------~~~~~~~l~~~~~~-~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~ 564 (589)
++.|. ++..+..-+-+..+ .+++..|+.++.+.. +++|.-..++..||.
T Consensus 490 ~LE~~~~~~~v~~~plV~Ka~l~~qwk~d~~~a~~Ll~KA~------------------------e~Dpkce~A~~tlaq 545 (606)
T KOG0547|consen 490 ELEPREHLIIVNAAPLVHKALLVLQWKEDINQAENLLRKAI------------------------ELDPKCEQAYETLAQ 545 (606)
T ss_pred hhccccccccccchhhhhhhHhhhchhhhHHHHHHHHHHHH------------------------ccCchHHHHHHHHHH
Confidence 99998 66666655555443 578888999988875 899999999999999
Q ss_pred HHHHcccCCCCcchHh
Q 007808 565 MIKLLPQNNHPLTFIV 580 (589)
Q Consensus 565 ~~~~~~~~~~~~~~~~ 580 (589)
+....|+.++||++-.
T Consensus 546 ~~lQ~~~i~eAielFE 561 (606)
T KOG0547|consen 546 FELQRGKIDEAIELFE 561 (606)
T ss_pred HHHHHhhHHHHHHHHH
Confidence 9999999999988643
No 46
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.62 E-value=1.4e-11 Score=112.19 Aligned_cols=409 Identities=14% Similarity=0.116 Sum_probs=243.8
Q ss_pred cHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchHHHhHHHHHHH--cCCChHHH-HHHHccCCC---CCeehHHHHHHH
Q 007808 102 TFPIVLKSCVKINALREGEELHCLVLKNGFRANIFVGTALIELYS--TGKAIEAA-YKVFGEMDE---RNVVVWTSMING 175 (589)
Q Consensus 102 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~--~~g~~~~A-~~~~~~~~~---~~~~~~~~l~~~ 175 (589)
+=+.|++. ...|.+..+.-+|+.|...|.+.+..+-..|.+.-+ ...+..-| .+.|-.|.. ....+|
T Consensus 118 ~E~nL~km-IS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~S~~sW------ 190 (625)
T KOG4422|consen 118 TENNLLKM-ISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGEDSTSSW------ 190 (625)
T ss_pred chhHHHHH-HhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhcccccccccccc------
Confidence 44555553 355777778888888888887777776666654333 22222211 223333332 222233
Q ss_pred HHhCCCHHHHHHHHHhCCCCChhHHHHHHHHHhcCCChHHHHHHhcccCC----CChhhHHHHHHHHHhcCCHHHHHHHH
Q 007808 176 YISCGDIVSARCLFELAPERDVILWNTIVSGYIDVRNMIEARKLFDQMPK----KDVISWNTMLSGYANNGDVEECKRLF 251 (589)
Q Consensus 176 ~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~A~~~~ 251 (589)
+.|...+ ++-+.......++..+|.++++-...+.|.+++++... .+..+||.+|.+-.-... .+++
T Consensus 191 --K~G~vAd---L~~E~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~~----K~Lv 261 (625)
T KOG4422|consen 191 --KSGAVAD---LLFETLPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSVG----KKLV 261 (625)
T ss_pred --ccccHHH---HHHhhcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhcc----HHHH
Confidence 2333333 44444455666777777777777777777777776653 456667766654433322 3444
Q ss_pred hhCC----CCCchhHHHHHHHHHhCCChHH----HHHHHHHHHHcCCCCCcHHHHHHHHHHHHhcCChhHH-HHHHHHHH
Q 007808 252 EEMP----ERNVFSWNGLIGGYANNGLFFE----VLDAFKRMLTEGRVFPNDATIVTVLSACARLGALDFS-KWVHVYAE 322 (589)
Q Consensus 252 ~~~~----~~~~~~~~~l~~~~~~~g~~~~----A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a-~~~~~~~~ 322 (589)
.+|. .||..|+|+++.+..+.|+++. |++++.+|.+.| +.|...+|..++..+++.++..+. ..++..+.
T Consensus 262 ~EMisqkm~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiG-VePsLsSyh~iik~f~re~dp~k~as~~i~dI~ 340 (625)
T KOG4422|consen 262 AEMISQKMTPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIG-VEPSLSSYHLIIKNFKRESDPQKVASSWINDIQ 340 (625)
T ss_pred HHHHHhhcCCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhC-CCcchhhHHHHHHHhcccCCchhhhHHHHHHHH
Confidence 4443 4788888888888777776654 456677778888 888888888888887777776443 33333332
Q ss_pred H----cCC----CCChhHHHHHHHHHHhcCChHHHHHHHhhCCCC-----------CcchHHHHHHHHHhCCChHHHHHH
Q 007808 323 Y----NGY----QGNVCVGNALIDMYAKCGIIENAVDVFNSMDTK-----------DLITWNTIISGLAMHGRGAGALSL 383 (589)
Q Consensus 323 ~----~~~----~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----------~~~~~~~l~~~~~~~~~~~~A~~~ 383 (589)
. ..+ +.+...|..-+..|....+.+-|..+-.-+... ...-|..+....++....+.-+.+
T Consensus 341 N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~ 420 (625)
T KOG4422|consen 341 NSLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKW 420 (625)
T ss_pred HhhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2 112 223445556666666777777777665544321 112355566667777777888888
Q ss_pred HHHHHHCCCCCCHhHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcC-CH--------HH----
Q 007808 384 FHEMKNAGEMPDGITFIGILCACTHMGLVEEGLSYFQSMAMDYSIVPQIEHYGCMVDLLARAG-RL--------AE---- 450 (589)
Q Consensus 384 ~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~--------~~---- 450 (589)
|+.|.-+-+-|+..+...++++....|.++-.-++|..+. .+|..-+.....-+...+++.+ +. ..
T Consensus 421 Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~-~~ght~r~~l~eeil~~L~~~k~hp~tp~r~Ql~~~~ak 499 (625)
T KOG4422|consen 421 YEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSK-EYGHTFRSDLREEILMLLARDKLHPLTPEREQLQVAFAK 499 (625)
T ss_pred HHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHH-HhhhhhhHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHH
Confidence 8888877777888888888888877788777777777663 3343333333333333333333 11 00
Q ss_pred -HHHHHhh-------C-CCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHccC---CCCCc--chHHHHHHHhhcCChHH
Q 007808 451 -AVDFVKR-------M-PIEADAVIWANLLGSCRVYKNVELAELALERLTELE---PKNPA--NFVMLSNIYGDLGRWKD 516 (589)
Q Consensus 451 -A~~~~~~-------~-~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---p~~~~--~~~~l~~~~~~~g~~~~ 516 (589)
|..+++. + ..+-.....+.....+.+.|..++|.+++....+.. |..|. +...+.+.-.+.+..-.
T Consensus 500 ~aad~~e~~e~~~~R~r~~~~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~spsq 579 (625)
T KOG4422|consen 500 CAADIKEAYESQPIRQRAQDWPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVSNSPSQ 579 (625)
T ss_pred HHHHHHHHHHhhHHHHHhccCChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhcCCHHH
Confidence 1111111 1 123345556667777788899999998888886532 44222 23345555667778888
Q ss_pred HHHHHHHhhhCC
Q 007808 517 VARIKVAMRDTG 528 (589)
Q Consensus 517 A~~~~~~~~~~~ 528 (589)
|+.+++-|...+
T Consensus 580 A~~~lQ~a~~~n 591 (625)
T KOG4422|consen 580 AIEVLQLASAFN 591 (625)
T ss_pred HHHHHHHHHHcC
Confidence 888888875443
No 47
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.62 E-value=7.2e-13 Score=129.81 Aligned_cols=274 Identities=10% Similarity=0.051 Sum_probs=148.0
Q ss_pred cCCHHHHHHHHhhCCCC--CchhHHHH-HHHHHhCCChHHHHHHHHHHHHcCCCCCcHHHHH--HHHHHHHhcCChhHHH
Q 007808 241 NGDVEECKRLFEEMPER--NVFSWNGL-IGGYANNGLFFEVLDAFKRMLTEGRVFPNDATIV--TVLSACARLGALDFSK 315 (589)
Q Consensus 241 ~~~~~~A~~~~~~~~~~--~~~~~~~l-~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~--~l~~~~~~~~~~~~a~ 315 (589)
.|+++.|++.+....+. ++..+..+ .....+.|+++.|.+.+.++.+.. |+..... .....+...|+++.|.
T Consensus 97 eGd~~~A~k~l~~~~~~~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~---~~~~~~~~l~~a~l~l~~g~~~~Al 173 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHAEQPVVNYLLAAEAAQQRGDEARANQHLERAAELA---DNDQLPVEITRVRIQLARNENHAAR 173 (398)
T ss_pred CCCHHHHHHHHHHHHhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC---CcchHHHHHHHHHHHHHCCCHHHHH
Confidence 35555555555544331 11222112 222345555555555555555432 3332221 2234455555555555
Q ss_pred HHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHhhCCCCCc-----------chHHHHHHHHHhCCChHHHHHHH
Q 007808 316 WVHVYAEYNGYQGNVCVGNALIDMYAKCGIIENAVDVFNSMDTKDL-----------ITWNTIISGLAMHGRGAGALSLF 384 (589)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-----------~~~~~l~~~~~~~~~~~~A~~~~ 384 (589)
..++.+.+.. |.+......+...|.+.|++++|.+++..+.+... .+|..++.......+.+...+++
T Consensus 174 ~~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w 252 (398)
T PRK10747 174 HGVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWW 252 (398)
T ss_pred HHHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 5555555544 34455555555566666666666655555543211 12222233233333444555555
Q ss_pred HHHHHCCCCCCHhHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHhhC-CCCCC
Q 007808 385 HEMKNAGEMPDGITFIGILCACTHMGLVEEGLSYFQSMAMDYSIVPQIEHYGCMVDLLARAGRLAEAVDFVKRM-PIEAD 463 (589)
Q Consensus 385 ~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~ 463 (589)
+.+-+. .+.+......+...+...|+.++|.+++++..+ ..|+.... ++.+....++.+++++..++. ...|+
T Consensus 253 ~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~---~~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk~~P~ 326 (398)
T PRK10747 253 KNQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLK---RQYDERLV--LLIPRLKTNNPEQLEKVLRQQIKQHGD 326 (398)
T ss_pred HhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh---cCCCHHHH--HHHhhccCCChHHHHHHHHHHHhhCCC
Confidence 554332 233555666677777777777777777766653 23444322 223333457777777777665 33443
Q ss_pred -HHHHHHHHHHHhcCCCHHHHHHHHHHHHccCCCCCcchHHHHHHHhhcCChHHHHHHHHHhh
Q 007808 464 -AVIWANLLGSCRVYKNVELAELALERLTELEPKNPANFVMLSNIYGDLGRWKDVARIKVAMR 525 (589)
Q Consensus 464 -~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 525 (589)
......+...|.+.|++++|.+.|+++++..|+ ...+..++.++.+.|+.++|.+++++-.
T Consensus 327 ~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~-~~~~~~La~~~~~~g~~~~A~~~~~~~l 388 (398)
T PRK10747 327 TPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPD-AYDYAWLADALDRLHKPEEAAAMRRDGL 388 (398)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 344556667777777777777777777777776 4456677777777777777777777654
No 48
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.61 E-value=1.2e-13 Score=132.80 Aligned_cols=275 Identities=14% Similarity=0.037 Sum_probs=219.3
Q ss_pred cCCHHHHHHHHhhCCC--CCc-hhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCC-cHHHHHHHHHHHHhcCChhHHHH
Q 007808 241 NGDVEECKRLFEEMPE--RNV-FSWNGLIGGYANNGLFFEVLDAFKRMLTEGRVFP-NDATIVTVLSACARLGALDFSKW 316 (589)
Q Consensus 241 ~~~~~~A~~~~~~~~~--~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~ 316 (589)
.-+..+|...|....+ +|. .....+..+|...+++++|.++|+.+.+..+... +..+|.+.+-.+-+ +-+..
T Consensus 332 ~y~~~~A~~~~~klp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~----~v~Ls 407 (638)
T KOG1126|consen 332 QYNCREALNLFEKLPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQD----EVALS 407 (638)
T ss_pred HHHHHHHHHHHHhhHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHh----hHHHH
Confidence 3456889999988654 333 4455678899999999999999999988653222 45677777665432 22233
Q ss_pred HHHH-HHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHhhCCCC---CcchHHHHHHHHHhCCChHHHHHHHHHHHHCCC
Q 007808 317 VHVY-AEYNGYQGNVCVGNALIDMYAKCGIIENAVDVFNSMDTK---DLITWNTIISGLAMHGRGAGALSLFHEMKNAGE 392 (589)
Q Consensus 317 ~~~~-~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~ 392 (589)
.+.+ +.+. .+..+.+|.++..+|.-+++.+.|++.|++...- ...+|+.+..-+.....+|.|...|+..+. +
T Consensus 408 ~Laq~Li~~-~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~--~ 484 (638)
T KOG1126|consen 408 YLAQDLIDT-DPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALG--V 484 (638)
T ss_pred HHHHHHHhh-CCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhc--C
Confidence 3322 2332 3667899999999999999999999999998854 447888888889999999999999998876 4
Q ss_pred CCC-HhHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHHhcCCHHHHHHHHhhC-CCCC-CHHHHH
Q 007808 393 MPD-GITFIGILCACTHMGLVEEGLSYFQSMAMDYSIVPQ-IEHYGCMVDLLARAGRLAEAVDFVKRM-PIEA-DAVIWA 468 (589)
Q Consensus 393 ~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~ 468 (589)
.|. -..|..+...|.+.++++.|+-.|++++ .+.|. ......++..+.+.|+.++|+++++++ ..+| |+..--
T Consensus 485 ~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~---~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~ 561 (638)
T KOG1126|consen 485 DPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAV---EINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKY 561 (638)
T ss_pred CchhhHHHHhhhhheeccchhhHHHHHHHhhh---cCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHH
Confidence 553 3467778889999999999999999997 55564 667777889999999999999999998 3444 555544
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHccCCCCCcchHHHHHHHhhcCChHHHHHHHHHhh
Q 007808 469 NLLGSCRVYKNVELAELALERLTELEPKNPANFVMLSNIYGDLGRWKDVARIKVAMR 525 (589)
Q Consensus 469 ~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 525 (589)
.....+...+++++|.+.++++.++-|++...+..++.+|.+.|+.+.|+.-+.-+.
T Consensus 562 ~~~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~ 618 (638)
T KOG1126|consen 562 HRASILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALLHFSWAL 618 (638)
T ss_pred HHHHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHhhHHHh
Confidence 556777889999999999999999999999999999999999999999999887775
No 49
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.58 E-value=6.4e-12 Score=123.88 Aligned_cols=280 Identities=12% Similarity=0.020 Sum_probs=145.5
Q ss_pred cCCChHHHHHHhcccCC--CChh-hHHHHHHHHHhcCCHHHHHHHHhhCCC--CCc--hhHHHHHHHHHhCCChHHHHHH
Q 007808 209 DVRNMIEARKLFDQMPK--KDVI-SWNTMLSGYANNGDVEECKRLFEEMPE--RNV--FSWNGLIGGYANNGLFFEVLDA 281 (589)
Q Consensus 209 ~~g~~~~a~~~~~~~~~--~~~~-~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~--~~~~~l~~~~~~~g~~~~A~~~ 281 (589)
..|+++.|.+.+.+..+ |+.. .+-.....+.+.|+.+.|.+.+.+..+ |+. .........+...|++++|...
T Consensus 96 ~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al~~ 175 (409)
T TIGR00540 96 AEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAARHG 175 (409)
T ss_pred hCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHHHH
Confidence 45666666666655543 3322 223334556666777777777766543 332 2223345666667777777777
Q ss_pred HHHHHHcCCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhHHHHHHHHH---H----hcCChHHHHHHHh
Q 007808 282 FKRMLTEGRVFPNDATIVTVLSACARLGALDFSKWVHVYAEYNGYQGNVCVGNALIDMY---A----KCGIIENAVDVFN 354 (589)
Q Consensus 282 ~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~---~----~~g~~~~A~~~~~ 354 (589)
++.+.+.. +-+...+..+...+...|+++.+.+.+..+.+.+..+.......-..++ . .....+...+.++
T Consensus 176 l~~l~~~~--P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~ 253 (409)
T TIGR00540 176 VDKLLEMA--PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNWWK 253 (409)
T ss_pred HHHHHHhC--CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 77777754 2244556666667777777777777777777665432221111111111 1 1122233334444
Q ss_pred hCCC---CCcchHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHhH--H-HHHHHHHhccCcHHHHHHHHHHhHHhcCC
Q 007808 355 SMDT---KDLITWNTIISGLAMHGRGAGALSLFHEMKNAGEMPDGIT--F-IGILCACTHMGLVEEGLSYFQSMAMDYSI 428 (589)
Q Consensus 355 ~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~--~-~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 428 (589)
...+ .++..+..++..+...|++++|.+++++..+. .||... + ..........++.+.+.+.+++..+....
T Consensus 254 ~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~--~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p~ 331 (409)
T TIGR00540 254 NQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKK--LGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNVDD 331 (409)
T ss_pred HCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhh--CCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhCCC
Confidence 4432 25556666666666667777777776666663 333321 0 11111122335555555555555443222
Q ss_pred CCChHHHHHHHHHHHhcCCHHHHHHHHhh--C-CCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHc
Q 007808 429 VPQIEHYGCMVDLLARAGRLAEAVDFVKR--M-PIEADAVIWANLLGSCRVYKNVELAELALERLTE 492 (589)
Q Consensus 429 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~--~-~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 492 (589)
.|+.....++...+.+.|++++|.+.|++ . ...|+...+..+...+.+.|+.++|.++|++.+.
T Consensus 332 ~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l~ 398 (409)
T TIGR00540 332 KPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSLG 398 (409)
T ss_pred ChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 22113444555555566666666666652 2 3455555555555555566666666666655543
No 50
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.58 E-value=8.7e-12 Score=117.66 Aligned_cols=259 Identities=11% Similarity=0.026 Sum_probs=196.1
Q ss_pred CcHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHhhCCC---CCcchHHHHHH
Q 007808 293 PNDATIVTVLSACARLGALDFSKWVHVYAEYNGYQGNVCVGNALIDMYAKCGIIENAVDVFNSMDT---KDLITWNTIIS 369 (589)
Q Consensus 293 p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~ 369 (589)
-+.........-|...+++.+...+.+...+.. |++...+..-|.++...|+..+-..+=.++.+ ....+|-++..
T Consensus 242 ~~~dll~~~ad~~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~yP~~a~sW~aVg~ 320 (611)
T KOG1173|consen 242 ENLDLLAEKADRLYYGCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLYPSKALSWFAVGC 320 (611)
T ss_pred hcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHhCCCCCcchhhHHH
Confidence 344555556666778888999999988888775 56666666666688888887766666555553 36678999888
Q ss_pred HHHhCCChHHHHHHHHHHHHCCCCCC-HhHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCH
Q 007808 370 GLAMHGRGAGALSLFHEMKNAGEMPD-GITFIGILCACTHMGLVEEGLSYFQSMAMDYSIVPQIEHYGCMVDLLARAGRL 448 (589)
Q Consensus 370 ~~~~~~~~~~A~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 448 (589)
-|...|++.+|...|.+... +.|. ...|..+..+|.-.|..++|...+..+.+-. +-...-+-.+.--|.+.+++
T Consensus 321 YYl~i~k~seARry~SKat~--lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~--~G~hlP~LYlgmey~~t~n~ 396 (611)
T KOG1173|consen 321 YYLMIGKYSEARRYFSKATT--LDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLM--PGCHLPSLYLGMEYMRTNNL 396 (611)
T ss_pred HHHHhcCcHHHHHHHHHHhh--cCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhc--cCCcchHHHHHHHHHHhccH
Confidence 88888999999999988765 4443 3568888888888899999998887775421 11111223355568888999
Q ss_pred HHHHHHHhhC-CCCC-CHHHHHHHHHHHhcCCCHHHHHHHHHHHHc----cCCC---CCcchHHHHHHHhhcCChHHHHH
Q 007808 449 AEAVDFVKRM-PIEA-DAVIWANLLGSCRVYKNVELAELALERLTE----LEPK---NPANFVMLSNIYGDLGRWKDVAR 519 (589)
Q Consensus 449 ~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~p~---~~~~~~~l~~~~~~~g~~~~A~~ 519 (589)
+-|.++|.++ .+.| |+...+-+.-.....+.+.+|...|+.++. ..+. -..++.+||.+|.+.+++++|+.
T Consensus 397 kLAe~Ff~~A~ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~ 476 (611)
T KOG1173|consen 397 KLAEKFFKQALAIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAID 476 (611)
T ss_pred HHHHHHHHHHHhcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHH
Confidence 9999999887 4555 566677777666778889999999988884 2222 23458889999999999999999
Q ss_pred HHHHhhhCCCccCCccceeeeCCeeeeeccccCCCchHHHHHHHHHHHHcccCCCCcchHh
Q 007808 520 IKVAMRDTGFKKLPGCSSIEVNEVVMLGCLSRELDRKSIVRAEANMIKLLPQNNHPLTFIV 580 (589)
Q Consensus 520 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~ 580 (589)
.+++.. .+.|.+++++..+|.+|.-+|+.+.||++.-
T Consensus 477 ~~q~aL------------------------~l~~k~~~~~asig~iy~llgnld~Aid~fh 513 (611)
T KOG1173|consen 477 YYQKAL------------------------LLSPKDASTHASIGYIYHLLGNLDKAIDHFH 513 (611)
T ss_pred HHHHHH------------------------HcCCCchhHHHHHHHHHHHhcChHHHHHHHH
Confidence 998875 7999999999999999999999999988754
No 51
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.53 E-value=1.8e-11 Score=110.94 Aligned_cols=275 Identities=13% Similarity=0.071 Sum_probs=204.0
Q ss_pred CCChHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHH
Q 007808 272 NGLFFEVLDAFKRMLTEGRVFPNDATIVTVLSACARLGALDFSKWVHVYAEYNGYQGNVCVGNALIDMYAKCGIIENAVD 351 (589)
Q Consensus 272 ~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 351 (589)
.|+|.+|.++..+..+.+ - -....|..-..+.-+.|+.+.+-.++.++.+....++....-+........|+.+.|..
T Consensus 97 eG~~~qAEkl~~rnae~~-e-~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~ 174 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHG-E-QPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARE 174 (400)
T ss_pred cCcHHHHHHHHHHhhhcC-c-chHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHH
Confidence 588888888888877766 2 22334555566777788888888888888776545666677777778888888888887
Q ss_pred HHhhCC---CCCcchHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHh-------HHHHHHHHHhccCcHHHHHHHHHH
Q 007808 352 VFNSMD---TKDLITWNTIISGLAMHGRGAGALSLFHEMKNAGEMPDGI-------TFIGILCACTHMGLVEEGLSYFQS 421 (589)
Q Consensus 352 ~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~-------~~~~l~~~~~~~g~~~~A~~~~~~ 421 (589)
-..++. ..++........+|.+.|++.+...++..|.+.|+-.+.. +|..+++-+...+..+.-...|+.
T Consensus 175 ~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~ 254 (400)
T COG3071 175 NVDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKN 254 (400)
T ss_pred HHHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHh
Confidence 776554 4577788888888999999999999999988887655543 567777777776777776777777
Q ss_pred hHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHhhC-CCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHccCCCCCcc
Q 007808 422 MAMDYSIVPQIEHYGCMVDLLARAGRLAEAVDFVKRM-PIEADAVIWANLLGSCRVYKNVELAELALERLTELEPKNPAN 500 (589)
Q Consensus 422 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 500 (589)
..++ .+-++..-.+++.-+.++|+.++|.++.++. +..-|.. -.....+.+-++.+.=++..++.++..|++|..
T Consensus 255 ~pr~--lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~--L~~~~~~l~~~d~~~l~k~~e~~l~~h~~~p~L 330 (400)
T COG3071 255 QPRK--LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR--LCRLIPRLRPGDPEPLIKAAEKWLKQHPEDPLL 330 (400)
T ss_pred ccHH--hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh--HHHHHhhcCCCCchHHHHHHHHHHHhCCCChhH
Confidence 7653 3445555667788888999999998888776 3233333 223345667888888888888888888888889
Q ss_pred hHHHHHHHhhcCChHHHHHHHHHhhhCCCccCCccceeeeCCeeeeeccccCCCchHHHHHHHHHHHHcccCCCCcc
Q 007808 501 FVMLSNIYGDLGRWKDVARIKVAMRDTGFKKLPGCSSIEVNEVVMLGCLSRELDRKSIVRAEANMIKLLPQNNHPLT 577 (589)
Q Consensus 501 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~ 577 (589)
+..|+..|.+.+.|.+|.+.++... +.. ...+.+..+|.++.+.|+..+|.+
T Consensus 331 ~~tLG~L~~k~~~w~kA~~~leaAl------------------------~~~-~s~~~~~~la~~~~~~g~~~~A~~ 382 (400)
T COG3071 331 LSTLGRLALKNKLWGKASEALEAAL------------------------KLR-PSASDYAELADALDQLGEPEEAEQ 382 (400)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHH------------------------hcC-CChhhHHHHHHHHHHcCChHHHHH
Confidence 9999999999999999999888764 333 335667888888888888876544
No 52
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.51 E-value=1.1e-10 Score=105.94 Aligned_cols=275 Identities=13% Similarity=0.031 Sum_probs=179.9
Q ss_pred CCChHHHHHHhcccCC---CChhhHHHHHHHHHhcCCHHHHHHHHhhCCCC----CchhHHHHHHHHHhCCChHHHHHHH
Q 007808 210 VRNMIEARKLFDQMPK---KDVISWNTMLSGYANNGDVEECKRLFEEMPER----NVFSWNGLIGGYANNGLFFEVLDAF 282 (589)
Q Consensus 210 ~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----~~~~~~~l~~~~~~~g~~~~A~~~~ 282 (589)
.|++.+|+++..+-.+ .....|..-..+.-..|+.+.+-.++.+..++ +....-+........|+++.|..-+
T Consensus 97 eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~v 176 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARENV 176 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHHH
Confidence 4555555555554433 11222333334455566666666666555542 2233444455566666666666666
Q ss_pred HHHHHcCCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC-------hhHHHHHHHHHHhcCChHHHHHHHhh
Q 007808 283 KRMLTEGRVFPNDATIVTVLSACARLGALDFSKWVHVYAEYNGYQGN-------VCVGNALIDMYAKCGIIENAVDVFNS 355 (589)
Q Consensus 283 ~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-------~~~~~~l~~~~~~~g~~~~A~~~~~~ 355 (589)
.++.+.+ +-+.........+|.+.|++.....++..+.+.+.-.+ ..+++.+++-....+..+.-...++.
T Consensus 177 ~~ll~~~--pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~ 254 (400)
T COG3071 177 DQLLEMT--PRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKN 254 (400)
T ss_pred HHHHHhC--cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHh
Confidence 6666654 23344555556666666666666666666666654333 23455556555555556665667777
Q ss_pred CC---CCCcchHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCCh
Q 007808 356 MD---TKDLITWNTIISGLAMHGRGAGALSLFHEMKNAGEMPDGITFIGILCACTHMGLVEEGLSYFQSMAMDYSIVPQI 432 (589)
Q Consensus 356 ~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 432 (589)
.+ +.++..-.+++.-+.+.|+.++|.++..+..+.+..|.. ...-.+.+.++...-++..++..+..+..|
T Consensus 255 ~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L----~~~~~~l~~~d~~~l~k~~e~~l~~h~~~p-- 328 (400)
T COG3071 255 QPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRL----CRLIPRLRPGDPEPLIKAAEKWLKQHPEDP-- 328 (400)
T ss_pred ccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhH----HHHHhhcCCCCchHHHHHHHHHHHhCCCCh--
Confidence 66 346777777888888899999999998888887777762 222345667777777777777766544444
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHhhC-CCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHc
Q 007808 433 EHYGCMVDLLARAGRLAEAVDFVKRM-PIEADAVIWANLLGSCRVYKNVELAELALERLTE 492 (589)
Q Consensus 433 ~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 492 (589)
..+.+|...|.+.+.|.+|.+.|+.. ...|+..+|+.+..++.+.|+.++|.+..++++.
T Consensus 329 ~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~ 389 (400)
T COG3071 329 LLLSTLGRLALKNKLWGKASEALEAALKLRPSASDYAELADALDQLGEPEEAEQVRREALL 389 (400)
T ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 66778888888999999998888876 6788888888888888889999988888888875
No 53
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.49 E-value=4.7e-09 Score=100.89 Aligned_cols=280 Identities=13% Similarity=0.147 Sum_probs=179.3
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHhhCCCCCchh-------HHHHHHHHHhCCChHHHHHHHHHHHHcCCCCC--------
Q 007808 229 ISWNTMLSGYANNGDVEECKRLFEEMPERNVFS-------WNGLIGGYANNGLFFEVLDAFKRMLTEGRVFP-------- 293 (589)
Q Consensus 229 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-------~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p-------- 293 (589)
..|..+...|-..|+++.|..+|++..+-+..+ |..-...=.+..+++.|+++++....-. -.|
T Consensus 388 ~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP-~~~~~~~yd~~ 466 (835)
T KOG2047|consen 388 TLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVP-TNPELEYYDNS 466 (835)
T ss_pred hHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCC-CchhhhhhcCC
Confidence 467888888899999999999999988744333 3333344445677888888887765432 111
Q ss_pred ---------cHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHhhCCC----CC
Q 007808 294 ---------NDATIVTVLSACARLGALDFSKWVHVYAEYNGYQGNVCVGNALIDMYAKCGIIENAVDVFNSMDT----KD 360 (589)
Q Consensus 294 ---------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~ 360 (589)
+...|...+..-...|-++....+|+.+++..+... .+.....-.+-...-++++.++|++-.. |+
T Consensus 467 ~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLriaTP-qii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~ 545 (835)
T KOG2047|consen 467 EPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIATP-QIIINYAMFLEEHKYFEESFKAYERGISLFKWPN 545 (835)
T ss_pred CcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCH-HHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCcc
Confidence 112344444444556778888888888888775433 2322333344555668888888887653 34
Q ss_pred c-chHHHHHHHHHh---CCChHHHHHHHHHHHHCCCCCCHhHHHHH--HHHHhccCcHHHHHHHHHHhHHhcCCCCC--h
Q 007808 361 L-ITWNTIISGLAM---HGRGAGALSLFHEMKNAGEMPDGITFIGI--LCACTHMGLVEEGLSYFQSMAMDYSIVPQ--I 432 (589)
Q Consensus 361 ~-~~~~~l~~~~~~---~~~~~~A~~~~~~m~~~~~~p~~~~~~~l--~~~~~~~g~~~~A~~~~~~~~~~~~~~~~--~ 432 (589)
+ ..|+..+.-+.+ ....+.|..+|++..+ |++|...-+..| ...-.+.|-...|.++++++.. ++++. .
T Consensus 546 v~diW~tYLtkfi~rygg~klEraRdLFEqaL~-~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~--~v~~a~~l 622 (835)
T KOG2047|consen 546 VYDIWNTYLTKFIKRYGGTKLERARDLFEQALD-GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATS--AVKEAQRL 622 (835)
T ss_pred HHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh--cCCHHHHH
Confidence 3 367776665554 3468899999999998 677754433223 2333455888899999999865 45444 4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHhhC-CCCCCHHHHHHHH---HHHhcCCCHHHHHHHHHHHHcc-CCC-CCcchHHHHH
Q 007808 433 EHYGCMVDLLARAGRLAEAVDFVKRM-PIEADAVIWANLL---GSCRVYKNVELAELALERLTEL-EPK-NPANFVMLSN 506 (589)
Q Consensus 433 ~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~---~~~~~~g~~~~A~~~~~~~~~~-~p~-~~~~~~~l~~ 506 (589)
..||..|.--...=-......+|+++ ..-|+...-...+ ..-.+.|..+.|..+|...-++ +|. +...|...=.
T Consensus 623 ~myni~I~kaae~yGv~~TR~iYekaIe~Lp~~~~r~mclrFAdlEtklGEidRARaIya~~sq~~dPr~~~~fW~twk~ 702 (835)
T KOG2047|consen 623 DMYNIYIKKAAEIYGVPRTREIYEKAIESLPDSKAREMCLRFADLETKLGEIDRARAIYAHGSQICDPRVTTEFWDTWKE 702 (835)
T ss_pred HHHHHHHHHHHHHhCCcccHHHHHHHHHhCChHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhhcCCCcCChHHHHHHHH
Confidence 56776665333322233334555554 2345544332222 3446889999999999999884 453 5668888888
Q ss_pred HHhhcCC
Q 007808 507 IYGDLGR 513 (589)
Q Consensus 507 ~~~~~g~ 513 (589)
.-.+.|+
T Consensus 703 FEvrHGn 709 (835)
T KOG2047|consen 703 FEVRHGN 709 (835)
T ss_pred HHHhcCC
Confidence 8888998
No 54
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.49 E-value=4.2e-12 Score=116.09 Aligned_cols=194 Identities=12% Similarity=0.097 Sum_probs=112.6
Q ss_pred hHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHH
Q 007808 363 TWNTIISGLAMHGRGAGALSLFHEMKNAGEMPDGITFIGILCACTHMGLVEEGLSYFQSMAMDYSIVPQIEHYGCMVDLL 442 (589)
Q Consensus 363 ~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~ 442 (589)
.+..+...+...|++++|.+.+++..+.. +.+...+..+...+...|++++|.+.+++.... .+.+...+..+...+
T Consensus 33 ~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~~~~~~ 109 (234)
T TIGR02521 33 IRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTL--NPNNGDVLNNYGTFL 109 (234)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCCHHHHHHHHHHH
Confidence 34445555566666666666666655531 223445555555666666666666666665432 122344555556666
Q ss_pred HhcCCHHHHHHHHhhCCC----CCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHccCCCCCcchHHHHHHHhhcCChHHHH
Q 007808 443 ARAGRLAEAVDFVKRMPI----EADAVIWANLLGSCRVYKNVELAELALERLTELEPKNPANFVMLSNIYGDLGRWKDVA 518 (589)
Q Consensus 443 ~~~g~~~~A~~~~~~~~~----~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~ 518 (589)
...|++++|.+.++++.. ......+..+...+...|++++|...++++++..|+++..+..++.++...|++++|.
T Consensus 110 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~ 189 (234)
T TIGR02521 110 CQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKDAR 189 (234)
T ss_pred HHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHHHH
Confidence 666666666666665521 1123344445556666666666666666666666666666666666666666666666
Q ss_pred HHHHHhhhCCCccCCccceeeeCCeeeeeccccCCCchHHHHHHHHHHHHcccCCCCcchHhhhh
Q 007808 519 RIKVAMRDTGFKKLPGCSSIEVNEVVMLGCLSRELDRKSIVRAEANMIKLLPQNNHPLTFIVVIF 583 (589)
Q Consensus 519 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 583 (589)
..+++.. +..|+++..+..++.++...|+.+.+..+...+.
T Consensus 190 ~~~~~~~------------------------~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 230 (234)
T TIGR02521 190 AYLERYQ------------------------QTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQ 230 (234)
T ss_pred HHHHHHH------------------------HhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 6666654 3345566666666666666666666655554443
No 55
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.48 E-value=2e-09 Score=103.32 Aligned_cols=188 Identities=14% Similarity=0.116 Sum_probs=105.5
Q ss_pred HHHHHHhcCChHHHHHHHhhCCCCCcchHHHHHH---HHHhCCChHHHHHHHHHHHHCCCCCCHh-HHHHHHHHHh---c
Q 007808 336 LIDMYAKCGIIENAVDVFNSMDTKDLITWNTIIS---GLAMHGRGAGALSLFHEMKNAGEMPDGI-TFIGILCACT---H 408 (589)
Q Consensus 336 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~---~~~~~~~~~~A~~~~~~m~~~~~~p~~~-~~~~l~~~~~---~ 408 (589)
.++.....|-++....+|+++..-.+.|=..+++ .+-.+.-++++.+++++-+..=..|+.. .|+..+.-+. .
T Consensus 483 y~DleEs~gtfestk~vYdriidLriaTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~ryg 562 (835)
T KOG2047|consen 483 YADLEESLGTFESTKAVYDRIIDLRIATPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYG 562 (835)
T ss_pred HHHHHHHhccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhc
Confidence 3343444455555555555554322222111111 1223444566666665544432234332 3444443332 3
Q ss_pred cCcHHHHHHHHHHhHHhcCCCCChH--HHHHHHHHHHhcCCHHHHHHHHhhCC--CCCC--HHHHHHHHHHHhcCCCHHH
Q 007808 409 MGLVEEGLSYFQSMAMDYSIVPQIE--HYGCMVDLLARAGRLAEAVDFVKRMP--IEAD--AVIWANLLGSCRVYKNVEL 482 (589)
Q Consensus 409 ~g~~~~A~~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~--~~~~~~l~~~~~~~g~~~~ 482 (589)
...++.|..+|++++. +.+|... .|......=.+.|....|+.+++++. +++. ...|+..+.--...=-+..
T Consensus 563 g~klEraRdLFEqaL~--~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~~v~~a~~l~myni~I~kaae~yGv~~ 640 (835)
T KOG2047|consen 563 GTKLERARDLFEQALD--GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATSAVKEAQRLDMYNIYIKKAAEIYGVPR 640 (835)
T ss_pred CCCHHHHHHHHHHHHh--cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhCCcc
Confidence 3568899999999976 5566532 23333333446788888999999883 3442 3567776633222212334
Q ss_pred HHHHHHHHHccCCCCCc--chHHHHHHHhhcCChHHHHHHHHHhh
Q 007808 483 AELALERLTELEPKNPA--NFVMLSNIYGDLGRWKDVARIKVAMR 525 (589)
Q Consensus 483 A~~~~~~~~~~~p~~~~--~~~~l~~~~~~~g~~~~A~~~~~~~~ 525 (589)
-.++|+++++.-|++-. .....+++-.+.|..+.|..++..-.
T Consensus 641 TR~iYekaIe~Lp~~~~r~mclrFAdlEtklGEidRARaIya~~s 685 (835)
T KOG2047|consen 641 TREIYEKAIESLPDSKAREMCLRFADLETKLGEIDRARAIYAHGS 685 (835)
T ss_pred cHHHHHHHHHhCChHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhh
Confidence 56789999998887433 33345777888999999999887653
No 56
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.46 E-value=2.3e-10 Score=100.76 Aligned_cols=249 Identities=12% Similarity=0.042 Sum_probs=184.0
Q ss_pred hCCChHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCC-C--hhHHHHHHHHHHhcCChH
Q 007808 271 NNGLFFEVLDAFKRMLTEGRVFPNDATIVTVLSACARLGALDFSKWVHVYAEYNGYQG-N--VCVGNALIDMYAKCGIIE 347 (589)
Q Consensus 271 ~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~--~~~~~~l~~~~~~~g~~~ 347 (589)
-+++.++|+++|-+|.+.. +-+..+..++.+.|.+.|..+.|++++..+.+..--+ + ......|..-|...|-++
T Consensus 47 Ls~Q~dKAvdlF~e~l~~d--~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~D 124 (389)
T COG2956 47 LSNQPDKAVDLFLEMLQED--PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLD 124 (389)
T ss_pred hhcCcchHHHHHHHHHhcC--chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhh
Confidence 3567888888888888754 3344566677788888888888888888877643111 1 223445677788889999
Q ss_pred HHHHHHhhCCCC---CcchHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCH----hHHHHHHHHHhccCcHHHHHHHHH
Q 007808 348 NAVDVFNSMDTK---DLITWNTIISGLAMHGRGAGALSLFHEMKNAGEMPDG----ITFIGILCACTHMGLVEEGLSYFQ 420 (589)
Q Consensus 348 ~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~----~~~~~l~~~~~~~g~~~~A~~~~~ 420 (589)
.|+.+|..+.+. -......|+..|-...+|++|+++-+++.+.+-.+.. ..|.-|...+....+.+.|..+++
T Consensus 125 RAE~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~ 204 (389)
T COG2956 125 RAEDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLK 204 (389)
T ss_pred HHHHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHH
Confidence 999999988763 3356677888899999999999999988886655543 246667777777788999999998
Q ss_pred HhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHhhC-CCCCC--HHHHHHHHHHHhcCCCHHHHHHHHHHHHccCCCC
Q 007808 421 SMAMDYSIVPQIEHYGCMVDLLARAGRLAEAVDFVKRM-PIEAD--AVIWANLLGSCRVYKNVELAELALERLTELEPKN 497 (589)
Q Consensus 421 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~ 497 (589)
+..+. -+..+..--.+.+.+...|+++.|++.++.+ ..+|+ +.+...|..+|.+.|+.++....+.++.+..+.
T Consensus 205 kAlqa--~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g- 281 (389)
T COG2956 205 KALQA--DKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNTG- 281 (389)
T ss_pred HHHhh--CccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccCC-
Confidence 88753 1223444455778889999999999999888 44565 355677778999999999999999999998887
Q ss_pred CcchHHHHHHHhhcCChHHHHHHHHHh
Q 007808 498 PANFVMLSNIYGDLGRWKDVARIKVAM 524 (589)
Q Consensus 498 ~~~~~~l~~~~~~~g~~~~A~~~~~~~ 524 (589)
+..-..+.+.-....-.+.|..++.+-
T Consensus 282 ~~~~l~l~~lie~~~G~~~Aq~~l~~Q 308 (389)
T COG2956 282 ADAELMLADLIELQEGIDAAQAYLTRQ 308 (389)
T ss_pred ccHHHHHHHHHHHhhChHHHHHHHHHH
Confidence 667777777766666666666665544
No 57
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.46 E-value=4.8e-10 Score=109.95 Aligned_cols=385 Identities=14% Similarity=0.037 Sum_probs=241.2
Q ss_pred CCeehHHHHHHHHHhCCCHHHHHHHHHhCCCC---ChhHHHHHHHHHhcCCChHHHHHHhcccCC----CC-hhhHHHHH
Q 007808 164 RNVVVWTSMINGYISCGDIVSARCLFELAPER---DVILWNTIVSGYIDVRNMIEARKLFDQMPK----KD-VISWNTML 235 (589)
Q Consensus 164 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~----~~-~~~~~~l~ 235 (589)
.|...|..+.-++...|+++.+.+.|++...- ....|+.+...+...|.-..|..+++.... |+ ...+-...
T Consensus 321 nd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~Lmas 400 (799)
T KOG4162|consen 321 NDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLLMAS 400 (799)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHHHHH
Confidence 35556666777777788888888888776543 456677777778888888888888776654 22 22333333
Q ss_pred HHHH-hcCCHHHHHHHHhhCCC--------CCchhHHHHHHHHHhC-----------CChHHHHHHHHHHHHcCCCCCcH
Q 007808 236 SGYA-NNGDVEECKRLFEEMPE--------RNVFSWNGLIGGYANN-----------GLFFEVLDAFKRMLTEGRVFPND 295 (589)
Q Consensus 236 ~~~~-~~~~~~~A~~~~~~~~~--------~~~~~~~~l~~~~~~~-----------g~~~~A~~~~~~~~~~~~~~p~~ 295 (589)
..|. +.+.+++++.+-.++.. -....|..+.-+|... -...++++.+++..+.++-.|+.
T Consensus 401 klc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~dp~~ 480 (799)
T KOG4162|consen 401 KLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPTDPLV 480 (799)
T ss_pred HHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCCCchH
Confidence 3333 24455555544444332 1233444444444321 12456788888888776444544
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHhhCCCC---CcchHHHHHHHHH
Q 007808 296 ATIVTVLSACARLGALDFSKWVHVYAEYNGYQGNVCVGNALIDMYAKCGIIENAVDVFNSMDTK---DLITWNTIISGLA 372 (589)
Q Consensus 296 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~ 372 (589)
..|..+ -|+-.++++.|.....+..+.+-..+...+..|.-.+...+++.+|+.+.+..... |...-..-+..-.
T Consensus 481 if~lal--q~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~l~~~~~~i~~ 558 (799)
T KOG4162|consen 481 IFYLAL--QYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNHVLMDGKIHIEL 558 (799)
T ss_pred HHHHHH--HHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhhchhhhhhhh
Confidence 444333 45566788888888888888866777888888888888888999988888765421 1111111122222
Q ss_pred hCCChHHHHHHHHHHHHC---------------------C--C---CC--CHhHHHHHHHHHhccCcHHHHHHHHHHhHH
Q 007808 373 MHGRGAGALSLFHEMKNA---------------------G--E---MP--DGITFIGILCACTHMGLVEEGLSYFQSMAM 424 (589)
Q Consensus 373 ~~~~~~~A~~~~~~m~~~---------------------~--~---~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 424 (589)
.-++.++++.....+..- | . .| ...++..+..-.. .+.+.+..-.. + .
T Consensus 559 ~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a--~~~~~~~se~~-L-p 634 (799)
T KOG4162|consen 559 TFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVA--SQLKSAGSELK-L-P 634 (799)
T ss_pred hcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHH--hhhhhcccccc-c-C
Confidence 245555555544443321 0 0 01 0112221111111 00000000000 1 1
Q ss_pred hcCCCCC--------hHHHHHHHHHHHhcCCHHHHHHHHhhC-CCCC-CHHHHHHHHHHHhcCCCHHHHHHHHHHHHccC
Q 007808 425 DYSIVPQ--------IEHYGCMVDLLARAGRLAEAVDFVKRM-PIEA-DAVIWANLLGSCRVYKNVELAELALERLTELE 494 (589)
Q Consensus 425 ~~~~~~~--------~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 494 (589)
.....|+ ...|......+.+.+..++|.-.+.+. .+.| ....|......+...|+.++|.+.|..++.++
T Consensus 635 ~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ld 714 (799)
T KOG4162|consen 635 SSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKIDPLSASVYYLRGLLLEVKGQLEEAKEAFLVALALD 714 (799)
T ss_pred cccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcchhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcC
Confidence 1112222 234556677888999999998887777 4444 45566666677888999999999999999999
Q ss_pred CCCCcchHHHHHHHhhcCChHHHHH--HHHHhhhCCCccCCccceeeeCCeeeeeccccCCCchHHHHHHHHHHHHcccC
Q 007808 495 PKNPANFVMLSNIYGDLGRWKDVAR--IKVAMRDTGFKKLPGCSSIEVNEVVMLGCLSRELDRKSIVRAEANMIKLLPQN 572 (589)
Q Consensus 495 p~~~~~~~~l~~~~~~~g~~~~A~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~ 572 (589)
|+++.....++.++.+.|+-.-|.. ++..+. +++|.+++++..||.+..+.|+.
T Consensus 715 P~hv~s~~Ala~~lle~G~~~la~~~~~L~dal------------------------r~dp~n~eaW~~LG~v~k~~Gd~ 770 (799)
T KOG4162|consen 715 PDHVPSMTALAELLLELGSPRLAEKRSLLSDAL------------------------RLDPLNHEAWYYLGEVFKKLGDS 770 (799)
T ss_pred CCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHH------------------------hhCCCCHHHHHHHHHHHHHccch
Confidence 9999999999999999998777777 777775 89999999999999999999999
Q ss_pred CCCcch
Q 007808 573 NHPLTF 578 (589)
Q Consensus 573 ~~~~~~ 578 (589)
.+|...
T Consensus 771 ~~Aaec 776 (799)
T KOG4162|consen 771 KQAAEC 776 (799)
T ss_pred HHHHHH
Confidence 876543
No 58
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.45 E-value=1.5e-10 Score=101.82 Aligned_cols=204 Identities=12% Similarity=0.060 Sum_probs=94.1
Q ss_pred HHHHHHhCCChHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC----hhHHHHHHHHH
Q 007808 265 LIGGYANNGLFFEVLDAFKRMLTEGRVFPNDATIVTVLSACARLGALDFSKWVHVYAEYNGYQGN----VCVGNALIDMY 340 (589)
Q Consensus 265 l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~ 340 (589)
|..-|...|-++.|.++|..+.+.+ ..-......++..|-...+|++|..+-.++.+.+-.+. ...|.-|...+
T Consensus 113 L~~Dym~aGl~DRAE~~f~~L~de~--efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~ 190 (389)
T COG2956 113 LGRDYMAAGLLDRAEDIFNQLVDEG--EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQA 190 (389)
T ss_pred HHHHHHHhhhhhHHHHHHHHHhcch--hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHH
Confidence 3344445555555555555554433 11223344444444455555555554444444432221 12333444444
Q ss_pred HhcCChHHHHHHHhhCCCC---CcchHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCcHHHHHH
Q 007808 341 AKCGIIENAVDVFNSMDTK---DLITWNTIISGLAMHGRGAGALSLFHEMKNAGEMPDGITFIGILCACTHMGLVEEGLS 417 (589)
Q Consensus 341 ~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~ 417 (589)
....+++.|..++.+..+. .+..--.+...+...|+++.|++.|+...+.+..--..+...|..+|.+.|+.++...
T Consensus 191 ~~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~ 270 (389)
T COG2956 191 LASSDVDRARELLKKALQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLN 270 (389)
T ss_pred hhhhhHHHHHHHHHHHHhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHH
Confidence 4445555555555544421 2233333445555566666666666665554322223344555556666666666666
Q ss_pred HHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHH-HhhCCCCCCHHHHHHHHHH
Q 007808 418 YFQSMAMDYSIVPQIEHYGCMVDLLARAGRLAEAVDF-VKRMPIEADAVIWANLLGS 473 (589)
Q Consensus 418 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~-~~~~~~~p~~~~~~~l~~~ 473 (589)
.+..+.+. .++...-..+.+.-....-.+.|... .+.+..+|+...+..++..
T Consensus 271 fL~~~~~~---~~g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r~Pt~~gf~rl~~~ 324 (389)
T COG2956 271 FLRRAMET---NTGADAELMLADLIELQEGIDAAQAYLTRQLRRKPTMRGFHRLMDY 324 (389)
T ss_pred HHHHHHHc---cCCccHHHHHHHHHHHhhChHHHHHHHHHHHhhCCcHHHHHHHHHh
Confidence 55555432 23333333333333333333333332 3334445665555555543
No 59
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.44 E-value=2.6e-11 Score=110.76 Aligned_cols=195 Identities=14% Similarity=0.082 Sum_probs=157.1
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHhhCCC---CCcchHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHH
Q 007808 330 VCVGNALIDMYAKCGIIENAVDVFNSMDT---KDLITWNTIISGLAMHGRGAGALSLFHEMKNAGEMPDGITFIGILCAC 406 (589)
Q Consensus 330 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~ 406 (589)
...+..+...+...|++++|.+.+++..+ .+...+..+...+...|++++|.+.+++..+.. +.+...+..+...+
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~ 109 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGTFL 109 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHH
Confidence 45566677778888888888888876652 245677778888889999999999999988753 33556777788888
Q ss_pred hccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHhhC-CCCC-CHHHHHHHHHHHhcCCCHHHHH
Q 007808 407 THMGLVEEGLSYFQSMAMDYSIVPQIEHYGCMVDLLARAGRLAEAVDFVKRM-PIEA-DAVIWANLLGSCRVYKNVELAE 484 (589)
Q Consensus 407 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~ 484 (589)
...|++++|.+.++++............+..+...+...|++++|.+.+++. ...| +...+..+...+...|++++|.
T Consensus 110 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~ 189 (234)
T TIGR02521 110 CQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKDAR 189 (234)
T ss_pred HHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHHHH
Confidence 9999999999999998753222334556777888999999999999999887 3344 4567777888899999999999
Q ss_pred HHHHHHHccCCCCCcchHHHHHHHhhcCChHHHHHHHHHhh
Q 007808 485 LALERLTELEPKNPANFVMLSNIYGDLGRWKDVARIKVAMR 525 (589)
Q Consensus 485 ~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 525 (589)
..++++++..|.++..+..++.++...|+.++|..+.+.+.
T Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 230 (234)
T TIGR02521 190 AYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQ 230 (234)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 99999999988888888899999999999999999988775
No 60
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.42 E-value=7.4e-09 Score=94.34 Aligned_cols=287 Identities=12% Similarity=-0.001 Sum_probs=172.7
Q ss_pred CCchhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCcHHH-HHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhHHHH
Q 007808 257 RNVFSWNGLIGGYANNGLFFEVLDAFKRMLTEGRVFPNDAT-IVTVLSACARLGALDFSKWVHVYAEYNGYQGNVCVGNA 335 (589)
Q Consensus 257 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~-~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 335 (589)
.|+.....+..++...|+.++|+..|++..-.+ |+..+ .....-.+.+.|+.+....+...+.... ..+...|..
T Consensus 230 ~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~d---py~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV 305 (564)
T KOG1174|consen 230 CNEHLMMALGKCLYYNGDYFQAEDIFSSTLCAN---PDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWFV 305 (564)
T ss_pred ccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCC---hhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhhh
Confidence 356666677777777777777777777765532 44322 1111222345566666555555544332 112222333
Q ss_pred HHHHHHhcCChHHHHHHHhhCCCC---CcchHHHHHHHHHhCCChHHHHHHHHHHHHCCCCC-CHhHHHHHHHHHhccCc
Q 007808 336 LIDMYAKCGIIENAVDVFNSMDTK---DLITWNTIISGLAMHGRGAGALSLFHEMKNAGEMP-DGITFIGILCACTHMGL 411 (589)
Q Consensus 336 l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~g~ 411 (589)
-+.......+++.|+.+-++..+. ++..+-.-...+...|++++|.-.|+..+. +.| +...|..|+.+|...|+
T Consensus 306 ~~~~l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~--Lap~rL~~Y~GL~hsYLA~~~ 383 (564)
T KOG1174|consen 306 HAQLLYDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQM--LAPYRLEIYRGLFHSYLAQKR 383 (564)
T ss_pred hhhhhhhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHHh--cchhhHHHHHHHHHHHHhhch
Confidence 333344556677777766665533 333444444566677777777777777665 344 55677777777777777
Q ss_pred HHHHHHHHHHhHHhcCCCCChHHHHHHH-HHH-HhcCCHHHHHHHHhhC-CCCCCH-HHHHHHHHHHhcCCCHHHHHHHH
Q 007808 412 VEEGLSYFQSMAMDYSIVPQIEHYGCMV-DLL-ARAGRLAEAVDFVKRM-PIEADA-VIWANLLGSCRVYKNVELAELAL 487 (589)
Q Consensus 412 ~~~A~~~~~~~~~~~~~~~~~~~~~~l~-~~~-~~~g~~~~A~~~~~~~-~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~ 487 (589)
+.+|.-.-+...+ -+..+..+...+. ..+ ..-..-++|.+++++. .+.|+. ...+.+...|...|..+.++.++
T Consensus 384 ~kEA~~~An~~~~--~~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LL 461 (564)
T KOG1174|consen 384 FKEANALANWTIR--LFQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIYTPAVNLIAELCQVEGPTKDIIKLL 461 (564)
T ss_pred HHHHHHHHHHHHH--HhhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccCCccHHHHHHHHHHHHhhCccchHHHHH
Confidence 7777766555544 2233444444332 222 2223346777777766 556653 33444556667777777777777
Q ss_pred HHHHccCCCCCcchHHHHHHHhhcCChHHHHHHHHHhhhCCCccCCccceeeeCCeeeeeccccCCCchHHHHHHHHHHH
Q 007808 488 ERLTELEPKNPANFVMLSNIYGDLGRWKDVARIKVAMRDTGFKKLPGCSSIEVNEVVMLGCLSRELDRKSIVRAEANMIK 567 (589)
Q Consensus 488 ~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~~~ 567 (589)
++.+...|+ ...+..|++++...+.+++|...|.... +++|++..++.-|..+..
T Consensus 462 e~~L~~~~D-~~LH~~Lgd~~~A~Ne~Q~am~~y~~AL------------------------r~dP~~~~sl~Gl~~lEK 516 (564)
T KOG1174|consen 462 EKHLIIFPD-VNLHNHLGDIMRAQNEPQKAMEYYYKAL------------------------RQDPKSKRTLRGLRLLEK 516 (564)
T ss_pred HHHHhhccc-cHHHHHHHHHHHHhhhHHHHHHHHHHHH------------------------hcCccchHHHHHHHHHHh
Confidence 777777776 5577777777777777777777777664 778888888888888776
Q ss_pred HcccCCCCcc
Q 007808 568 LLPQNNHPLT 577 (589)
Q Consensus 568 ~~~~~~~~~~ 577 (589)
++. .++|.+
T Consensus 517 ~~~-~~DATd 525 (564)
T KOG1174|consen 517 SDD-ESDATD 525 (564)
T ss_pred ccC-CCCccc
Confidence 555 344443
No 61
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.42 E-value=8e-10 Score=98.46 Aligned_cols=89 Identities=10% Similarity=0.012 Sum_probs=37.6
Q ss_pred HHHHHcCCChhHHHHHHHHhhhCCCCCCcccHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchHHHhHHHHHHHcCCCh
Q 007808 72 FNGYAQNEFHRTVVVLFTQMKKLDAMPNCFTFPIVLKSCVKINALREGEELHCLVLKNGFRANIFVGTALIELYSTGKAI 151 (589)
Q Consensus 72 l~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 151 (589)
+.-+....++..|+.+++.-...+-.-...+-..+..++...|++++|...|..+.... .++...+-.|.-++.-.|.+
T Consensus 29 Ledfls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~-~~~~el~vnLAcc~FyLg~Y 107 (557)
T KOG3785|consen 29 LEDFLSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKD-DAPAELGVNLACCKFYLGQY 107 (557)
T ss_pred HHHHHhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccC-CCCcccchhHHHHHHHHHHH
Confidence 33444445555555555443322211111222223333345555555555555544432 33333333343333344555
Q ss_pred HHHHHHHccC
Q 007808 152 EAAYKVFGEM 161 (589)
Q Consensus 152 ~~A~~~~~~~ 161 (589)
.+|..+-.+.
T Consensus 108 ~eA~~~~~ka 117 (557)
T KOG3785|consen 108 IEAKSIAEKA 117 (557)
T ss_pred HHHHHHHhhC
Confidence 5555554443
No 62
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.42 E-value=2.2e-10 Score=113.73 Aligned_cols=243 Identities=12% Similarity=0.063 Sum_probs=122.6
Q ss_pred HHHHhhhCCCCCCcccHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchHHHhHHHHHHHcCCChHHHHHHHccCCCCCe
Q 007808 87 LFTQMKKLDAMPNCFTFPIVLKSCVKINALREGEELHCLVLKNGFRANIFVGTALIELYSTGKAIEAAYKVFGEMDERNV 166 (589)
Q Consensus 87 ~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~ 166 (589)
++..+...|+.|+.+||..++..||..|+.+.|- +|..|.-...+.+..+++.++......++.+.+. +|..
T Consensus 12 fla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-------ep~a 83 (1088)
T KOG4318|consen 12 FLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-------EPLA 83 (1088)
T ss_pred HHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-------CCch
Confidence 3444455555555555555555555555555555 5555555555555555555555555555554443 4455
Q ss_pred ehHHHHHHHHHhCCCHHH---HHHHHHhCC---------------------CC-ChhHHHHHHHHHhcCCChHHHHHHhc
Q 007808 167 VVWTSMINGYISCGDIVS---ARCLFELAP---------------------ER-DVILWNTIVSGYIDVRNMIEARKLFD 221 (589)
Q Consensus 167 ~~~~~l~~~~~~~g~~~~---a~~~~~~~~---------------------~~-~~~~~~~l~~~~~~~g~~~~a~~~~~ 221 (589)
.+|..|..+|...||+.. ..+.++.+. .| ....-..++....-.|-++.+++++.
T Consensus 84 Dtyt~Ll~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwaqllkll~ 163 (1088)
T KOG4318|consen 84 DTYTNLLKAYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQLLKLLA 163 (1088)
T ss_pred hHHHHHHHHHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHHHHHHHh
Confidence 555555555555555432 111111110 00 00011122233334455555555555
Q ss_pred ccCC--CChhhHHHHHHHHHh-cCCHHHHHHHHhhCCC-CCchhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCcHHH
Q 007808 222 QMPK--KDVISWNTMLSGYAN-NGDVEECKRLFEEMPE-RNVFSWNGLIGGYANNGLFFEVLDAFKRMLTEGRVFPNDAT 297 (589)
Q Consensus 222 ~~~~--~~~~~~~~l~~~~~~-~~~~~~A~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~ 297 (589)
.+.. .+.. ...+++-+.. ...+++-..+.+...+ +++.++..++.+-...|+.+.|..++.+|.+.| ++.+..-
T Consensus 164 ~~Pvsa~~~p-~~vfLrqnv~~ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~g-fpir~Hy 241 (1088)
T KOG4318|consen 164 KVPVSAWNAP-FQVFLRQNVVDNTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKEKG-FPIRAHY 241 (1088)
T ss_pred hCCcccccch-HHHHHHHhccCCchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcC-CCccccc
Confidence 4432 1110 0001222221 2223333333333333 666667777776667777777777777777777 6655555
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhHHHHHHHHHHh
Q 007808 298 IVTVLSACARLGALDFSKWVHVYAEYNGYQGNVCVGNALIDMYAK 342 (589)
Q Consensus 298 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 342 (589)
|..++-+ .++...++.++.-|...|+.|+..|+...+..+..
T Consensus 242 FwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~ 283 (1088)
T KOG4318|consen 242 FWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLS 283 (1088)
T ss_pred chhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhc
Confidence 5555443 56666666666667777777766666554444443
No 63
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.41 E-value=3.8e-11 Score=100.79 Aligned_cols=195 Identities=15% Similarity=0.117 Sum_probs=162.4
Q ss_pred hHHHHHHHHHhCCChHHHHHHHHHHHHCCCCC-CHhHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCC-ChHHHHHHHH
Q 007808 363 TWNTIISGLAMHGRGAGALSLFHEMKNAGEMP-DGITFIGILCACTHMGLVEEGLSYFQSMAMDYSIVP-QIEHYGCMVD 440 (589)
Q Consensus 363 ~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~~l~~ 440 (589)
+...|.-.|.+.|++..|..-+++.++. .| +..++..+...|.+.|+.+.|.+.|+++.. +.| +-.+.|....
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~~--DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAls---l~p~~GdVLNNYG~ 111 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALEH--DPSYYLAHLVRAHYYQKLGENDLADESYRKALS---LAPNNGDVLNNYGA 111 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHcCChhhHHHHHHHHHh---cCCCccchhhhhhH
Confidence 3455778899999999999999999995 56 456888899999999999999999999974 345 4678899999
Q ss_pred HHHhcCCHHHHHHHHhhCCCCCC----HHHHHHHHHHHhcCCCHHHHHHHHHHHHccCCCCCcchHHHHHHHhhcCChHH
Q 007808 441 LLARAGRLAEAVDFVKRMPIEAD----AVIWANLLGSCRVYKNVELAELALERLTELEPKNPANFVMLSNIYGDLGRWKD 516 (589)
Q Consensus 441 ~~~~~g~~~~A~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 516 (589)
.+|..|++++|...|+++...|. ..+|..+..+..+.|+.+.|.+.|++.++++|+.+.....++....+.|++-+
T Consensus 112 FLC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~ 191 (250)
T COG3063 112 FLCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAP 191 (250)
T ss_pred HHHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchH
Confidence 99999999999999999844443 57788888888999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhCCCccCCccceeeeCCeeeeeccccCCCchHHHHHHHHHHHHcccCCCCcchHhhhhhcc
Q 007808 517 VARIKVAMRDTGFKKLPGCSSIEVNEVVMLGCLSRELDRKSIVRAEANMIKLLPQNNHPLTFIVVIFSTF 586 (589)
Q Consensus 517 A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 586 (589)
|..++++....+ |-.++-+-+.-.+...+|+...+-.+-.-|..-|
T Consensus 192 Ar~~~~~~~~~~------------------------~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~f 237 (250)
T COG3063 192 ARLYLERYQQRG------------------------GAQAESLLLGIRIAKRLGDRAAAQRYQAQLQRLF 237 (250)
T ss_pred HHHHHHHHHhcc------------------------cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC
Confidence 999999986333 3445555566667777777766666666666555
No 64
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.39 E-value=3.6e-09 Score=100.87 Aligned_cols=437 Identities=11% Similarity=0.096 Sum_probs=247.8
Q ss_pred HHHHHcCCChhHHHHHHHHhhhCCCCCCcccHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchHHHhH--HHHHHH--c
Q 007808 72 FNGYAQNEFHRTVVVLFTQMKKLDAMPNCFTFPIVLKSCVKINALREGEELHCLVLKNGFRANIFVGTA--LIELYS--T 147 (589)
Q Consensus 72 l~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~--li~~~~--~ 147 (589)
+.-+...|++++|.....++...+ +.+...+..=+-++...+.+++|..+.+.- + -..+++. +=.+|| +
T Consensus 19 ln~~~~~~e~e~a~k~~~Kil~~~-pdd~~a~~cKvValIq~~ky~~ALk~ikk~---~---~~~~~~~~~fEKAYc~Yr 91 (652)
T KOG2376|consen 19 LNRHGKNGEYEEAVKTANKILSIV-PDDEDAIRCKVVALIQLDKYEDALKLIKKN---G---ALLVINSFFFEKAYCEYR 91 (652)
T ss_pred HHHhccchHHHHHHHHHHHHHhcC-CCcHhhHhhhHhhhhhhhHHHHHHHHHHhc---c---hhhhcchhhHHHHHHHHH
Confidence 344556677777777777777554 334445555566666777777776443321 1 0111111 234444 5
Q ss_pred CCChHHHHHHHccCCCCCeehHHHHHHHHHhCCCHHHHHHHHHhCCCCChhHHHHHHHHH-hcCCChHHHHHHhcccCCC
Q 007808 148 GKAIEAAYKVFGEMDERNVVVWTSMINGYISCGDIVSARCLFELAPERDVILWNTIVSGY-IDVRNMIEARKLFDQMPKK 226 (589)
Q Consensus 148 ~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~-~~~g~~~~a~~~~~~~~~~ 226 (589)
.+..++|+..++-....+..+...-...+.+.|++++|+.+|+.+.+.+...+...+.+- ...+-.-.+. +.+.....
T Consensus 92 lnk~Dealk~~~~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~~-~~q~v~~v 170 (652)
T KOG2376|consen 92 LNKLDEALKTLKGLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQVQ-LLQSVPEV 170 (652)
T ss_pred cccHHHHHHHHhcccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhHH-HHHhccCC
Confidence 677788887777544445446666677777888888888888877655433332222211 1111111111 22222221
Q ss_pred ChhhH---HHHHHHHHhcCCHHHHHHHHhhCC--------CCCc----------hhHHHHHHHHHhCCChHHHHHHHHHH
Q 007808 227 DVISW---NTMLSGYANNGDVEECKRLFEEMP--------ERNV----------FSWNGLIGGYANNGLFFEVLDAFKRM 285 (589)
Q Consensus 227 ~~~~~---~~l~~~~~~~~~~~~A~~~~~~~~--------~~~~----------~~~~~l~~~~~~~g~~~~A~~~~~~~ 285 (589)
...+| ......+...|++.+|+++++... +.|. ..--.|.-++...|+..+|..+|...
T Consensus 171 ~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~ 250 (652)
T KOG2376|consen 171 PEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDI 250 (652)
T ss_pred CcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHH
Confidence 12233 334456667888888888888772 1111 11223455677889999999999999
Q ss_pred HHcCCCCCcHHHHHHHHH---HHHhcCChhH--HHHHHHHHH-----------HcCCCCChhHHHHHHHHHHhcCChHHH
Q 007808 286 LTEGRVFPNDATIVTVLS---ACARLGALDF--SKWVHVYAE-----------YNGYQGNVCVGNALIDMYAKCGIIENA 349 (589)
Q Consensus 286 ~~~~~~~p~~~~~~~l~~---~~~~~~~~~~--a~~~~~~~~-----------~~~~~~~~~~~~~l~~~~~~~g~~~~A 349 (589)
++.. ++|........+ +.....++.. +...++... ...-......-+.++..| .+..+.+
T Consensus 251 i~~~--~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~--tnk~~q~ 326 (652)
T KOG2376|consen 251 IKRN--PADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALF--TNKMDQV 326 (652)
T ss_pred HHhc--CCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH--hhhHHHH
Confidence 8886 455533322222 2221111111 111111110 000000111112233333 3556677
Q ss_pred HHHHhhCCCCC-cchHHHHHHHHH--hCCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCcHHHHHHHHH------
Q 007808 350 VDVFNSMDTKD-LITWNTIISGLA--MHGRGAGALSLFHEMKNAGEMPDGITFIGILCACTHMGLVEEGLSYFQ------ 420 (589)
Q Consensus 350 ~~~~~~~~~~~-~~~~~~l~~~~~--~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~------ 420 (589)
.++........ ...+.+++.... +...+.++.+++....+....-+.......+......|+++.|.+++.
T Consensus 327 r~~~a~lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~ 406 (652)
T KOG2376|consen 327 RELSASLPGMSPESLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESW 406 (652)
T ss_pred HHHHHhCCccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhh
Confidence 77776666433 334444444332 223577888888887775222223455556667788999999999998
Q ss_pred --HhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHhhCC-----CCCCHHHHHHHH----HHHhcCCCHHHHHHHHHH
Q 007808 421 --SMAMDYSIVPQIEHYGCMVDLLARAGRLAEAVDFVKRMP-----IEADAVIWANLL----GSCRVYKNVELAELALER 489 (589)
Q Consensus 421 --~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-----~~p~~~~~~~l~----~~~~~~g~~~~A~~~~~~ 489 (589)
.+. +.+..|. +...+...|.+.++.+-|..++.+.. ..+.......++ ..-.+.|+.++|...+++
T Consensus 407 ~ss~~-~~~~~P~--~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~lee 483 (652)
T KOG2376|consen 407 KSSIL-EAKHLPG--TVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEE 483 (652)
T ss_pred hhhhh-hhccChh--HHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHH
Confidence 442 2244444 45557778888887766666666541 122333333333 333567999999999999
Q ss_pred HHccCCCCCcchHHHHHHHhhcCChHHHHHHHHHh
Q 007808 490 LTELEPKNPANFVMLSNIYGDLGRWKDVARIKVAM 524 (589)
Q Consensus 490 ~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 524 (589)
+++.+|++..+...++-+|++. +.+.|+.+-+.+
T Consensus 484 l~k~n~~d~~~l~~lV~a~~~~-d~eka~~l~k~L 517 (652)
T KOG2376|consen 484 LVKFNPNDTDLLVQLVTAYARL-DPEKAESLSKKL 517 (652)
T ss_pred HHHhCCchHHHHHHHHHHHHhc-CHHHHHHHhhcC
Confidence 9999999999999999999876 567777765544
No 65
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.38 E-value=1.3e-11 Score=108.33 Aligned_cols=225 Identities=14% Similarity=0.100 Sum_probs=153.8
Q ss_pred HHHHHHHHhCCChHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhHHHHHHHHHHh
Q 007808 263 NGLIGGYANNGLFFEVLDAFKRMLTEGRVFPNDATIVTVLSACARLGALDFSKWVHVYAEYNGYQGNVCVGNALIDMYAK 342 (589)
Q Consensus 263 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 342 (589)
+.+..+|.+.|-+.+|.+.|+..++.. |-+.||..+-++|.+..++..|..++.+-.+. +|.++.......+.+..
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q~---~~~dTfllLskvY~ridQP~~AL~~~~~gld~-fP~~VT~l~g~ARi~ea 302 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQF---PHPDTFLLLSKVYQRIDQPERALLVIGEGLDS-FPFDVTYLLGQARIHEA 302 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhcC---CchhHHHHHHHHHHHhccHHHHHHHHhhhhhc-CCchhhhhhhhHHHHHH
Confidence 557788888888888888888888754 67777888888888888888888887776664 34555555555566666
Q ss_pred cCChHHHHHHHhhCCCC---CcchHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCcHHHHHHHH
Q 007808 343 CGIIENAVDVFNSMDTK---DLITWNTIISGLAMHGRGAGALSLFHEMKNAGEMPDGITFIGILCACTHMGLVEEGLSYF 419 (589)
Q Consensus 343 ~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 419 (589)
.++.++|.++|+...+. ++...-++...|.-.++++-|+..++++.+.|+ -+...|+.+.-+|.-.+++|-++..|
T Consensus 303 m~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~-~speLf~NigLCC~yaqQ~D~~L~sf 381 (478)
T KOG1129|consen 303 MEQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGA-QSPELFCNIGLCCLYAQQIDLVLPSF 381 (478)
T ss_pred HHhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcC-CChHHHhhHHHHHHhhcchhhhHHHH
Confidence 66666666666655432 334444444555555666666666666666553 34455555555555555555555554
Q ss_pred HHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHhhCCCCC--CHHHHHHHHHHHhcCCCHHHHHHHHHHHHccCCCC
Q 007808 420 QSMAMDYSIVPQIEHYGCMVDLLARAGRLAEAVDFVKRMPIEA--DAVIWANLLGSCRVYKNVELAELALERLTELEPKN 497 (589)
Q Consensus 420 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~ 497 (589)
++.... - ..| ....|..+.......||+..|.+.|+-++..+|++
T Consensus 382 ~RAlst-a--------------------------------t~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h 428 (478)
T KOG1129|consen 382 QRALST-A--------------------------------TQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQH 428 (478)
T ss_pred HHHHhh-c--------------------------------cCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcch
Confidence 444221 0 112 23456666677778899999999999999999999
Q ss_pred CcchHHHHHHHhhcCChHHHHHHHHHhh
Q 007808 498 PANFVMLSNIYGDLGRWKDVARIKVAMR 525 (589)
Q Consensus 498 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 525 (589)
.+++++|+.+-.+.|+.++|..++....
T Consensus 429 ~ealnNLavL~~r~G~i~~Arsll~~A~ 456 (478)
T KOG1129|consen 429 GEALNNLAVLAARSGDILGARSLLNAAK 456 (478)
T ss_pred HHHHHhHHHHHhhcCchHHHHHHHHHhh
Confidence 9999999999999999999999988875
No 66
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.37 E-value=8.3e-10 Score=108.37 Aligned_cols=389 Identities=16% Similarity=0.039 Sum_probs=246.5
Q ss_pred CCCCchHHHhHHHHHHHcCCChHHHHHHHccCCC---CCeehHHHHHHHHHhCCCHHHHHHHHHhCCCC-----ChhHHH
Q 007808 130 GFRANIFVGTALIELYSTGKAIEAAYKVFGEMDE---RNVVVWTSMINGYISCGDIVSARCLFELAPER-----DVILWN 201 (589)
Q Consensus 130 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-----~~~~~~ 201 (589)
.+..|..+|..|.-+..+.|+++.+-+.|++... .....|..+...|...|.-..|..+++....+ |...+-
T Consensus 318 ~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~L 397 (799)
T KOG4162|consen 318 KFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLL 397 (799)
T ss_pred hhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHH
Confidence 3556777888888888888888888888887764 34457888888888888888888888776543 233344
Q ss_pred HHHHHHh-cCCChHHHHHHhcccCC--------CChhhHHHHHHHHHhc-----------CCHHHHHHHHhhCCC---CC
Q 007808 202 TIVSGYI-DVRNMIEARKLFDQMPK--------KDVISWNTMLSGYANN-----------GDVEECKRLFEEMPE---RN 258 (589)
Q Consensus 202 ~l~~~~~-~~g~~~~a~~~~~~~~~--------~~~~~~~~l~~~~~~~-----------~~~~~A~~~~~~~~~---~~ 258 (589)
.....|. +.+.+++++.+-.++.+ -....|..+.-+|... ....++.+.+++..+ .|
T Consensus 398 masklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~d 477 (799)
T KOG4162|consen 398 MASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPTD 477 (799)
T ss_pred HHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 4444444 34566666555544432 2334444444444331 113455666666654 23
Q ss_pred chhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhHHHHHHH
Q 007808 259 VFSWNGLIGGYANNGLFFEVLDAFKRMLTEGRVFPNDATIVTVLSACARLGALDFSKWVHVYAEYNGYQGNVCVGNALID 338 (589)
Q Consensus 259 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 338 (589)
+.....+.--|+..++.+.|++..++..+-+ -.-+...|..+.-.+...+++..|+.+.+.....- +.|-.....-+.
T Consensus 478 p~~if~lalq~A~~R~l~sAl~~~~eaL~l~-~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~-~~N~~l~~~~~~ 555 (799)
T KOG4162|consen 478 PLVIFYLALQYAEQRQLTSALDYAREALALN-RGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEF-GDNHVLMDGKIH 555 (799)
T ss_pred chHHHHHHHHHHHHHhHHHHHHHHHHHHHhc-CCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHh-hhhhhhchhhhh
Confidence 3333334445677788888888888888875 35567777777777888888888888877765431 111111111122
Q ss_pred HHHhcCChHHHHHHHhhCC------------------------------CC--CcchHHHHHHHHHhCCChHHHHHHHHH
Q 007808 339 MYAKCGIIENAVDVFNSMD------------------------------TK--DLITWNTIISGLAMHGRGAGALSLFHE 386 (589)
Q Consensus 339 ~~~~~g~~~~A~~~~~~~~------------------------------~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~ 386 (589)
.-...++.++|......+. ++ .+.++..+.......+ +.+..-..
T Consensus 556 i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~--~~~~se~~- 632 (799)
T KOG4162|consen 556 IELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQL--KSAGSELK- 632 (799)
T ss_pred hhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhh--hhcccccc-
Confidence 2222344444443322211 00 1122222222111111 00000000
Q ss_pred HHHCCCCCCH--------hHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHhhC
Q 007808 387 MKNAGEMPDG--------ITFIGILCACTHMGLVEEGLSYFQSMAMDYSIVPQIEHYGCMVDLLARAGRLAEAVDFVKRM 458 (589)
Q Consensus 387 m~~~~~~p~~--------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 458 (589)
|....+.|.. ..|......+.+.+..++|...+.++.. -.+-....|......+...|.+++|.+.|...
T Consensus 633 Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~--~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~A 710 (799)
T KOG4162|consen 633 LPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASK--IDPLSASVYYLRGLLLEVKGQLEEAKEAFLVA 710 (799)
T ss_pred cCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHh--cchhhHHHHHHhhHHHHHHHhhHHHHHHHHHH
Confidence 1221222322 2345566678888999999988888753 22334566777778899999999999998887
Q ss_pred -CCCCC-HHHHHHHHHHHhcCCCHHHHHH--HHHHHHccCCCCCcchHHHHHHHhhcCChHHHHHHHHHhh
Q 007808 459 -PIEAD-AVIWANLLGSCRVYKNVELAEL--ALERLTELEPKNPANFVMLSNIYGDLGRWKDVARIKVAMR 525 (589)
Q Consensus 459 -~~~p~-~~~~~~l~~~~~~~g~~~~A~~--~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 525 (589)
.++|+ +....++...+.+.|+..-|.. ++..+++++|.++++|+.++.++.+.|+.++|.+.|....
T Consensus 711 l~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~ 781 (799)
T KOG4162|consen 711 LALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAAL 781 (799)
T ss_pred HhcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHH
Confidence 56775 5778888899999999888888 9999999999999999999999999999999999998875
No 67
>PRK12370 invasion protein regulator; Provisional
Probab=99.33 E-value=6.3e-10 Score=114.12 Aligned_cols=244 Identities=14% Similarity=0.007 Sum_probs=176.9
Q ss_pred CChHHHHHHHHHHHHcCCCCCc-HHHHHHHHHHHH---------hcCChhHHHHHHHHHHHcCCCCChhHHHHHHHHHHh
Q 007808 273 GLFFEVLDAFKRMLTEGRVFPN-DATIVTVLSACA---------RLGALDFSKWVHVYAEYNGYQGNVCVGNALIDMYAK 342 (589)
Q Consensus 273 g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~---------~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 342 (589)
+++++|+..|++.++.. |+ ...+..+..++. ..+++++|...++++.+.+ |.+...+..+...+..
T Consensus 275 ~~~~~A~~~~~~Al~ld---P~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ld-P~~~~a~~~lg~~~~~ 350 (553)
T PRK12370 275 YSLQQALKLLTQCVNMS---PNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELD-HNNPQALGLLGLINTI 350 (553)
T ss_pred HHHHHHHHHHHHHHhcC---CccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHH
Confidence 34678999999998854 54 344554544433 2244789999999998876 5677888888889999
Q ss_pred cCChHHHHHHHhhCCC--C-CcchHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCH-hHHHHHHHHHhccCcHHHHHHH
Q 007808 343 CGIIENAVDVFNSMDT--K-DLITWNTIISGLAMHGRGAGALSLFHEMKNAGEMPDG-ITFIGILCACTHMGLVEEGLSY 418 (589)
Q Consensus 343 ~g~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~ 418 (589)
.|++++|...|++..+ | +...+..+..++...|++++|+..+++..+. .|+. ..+..++..+...|++++|...
T Consensus 351 ~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l--~P~~~~~~~~~~~~~~~~g~~eeA~~~ 428 (553)
T PRK12370 351 HSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKL--DPTRAAAGITKLWITYYHTGIDDAIRL 428 (553)
T ss_pred ccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCChhhHHHHHHHHHhccCHHHHHHH
Confidence 9999999999998763 3 4567888899999999999999999999984 5543 2333444456668999999999
Q ss_pred HHHhHHhcCCCC-ChHHHHHHHHHHHhcCCHHHHHHHHhhC-CCCCCHHH-HHHHHHHHhcCCCHHHHHHHHHHHHccCC
Q 007808 419 FQSMAMDYSIVP-QIEHYGCMVDLLARAGRLAEAVDFVKRM-PIEADAVI-WANLLGSCRVYKNVELAELALERLTELEP 495 (589)
Q Consensus 419 ~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~-~~~l~~~~~~~g~~~~A~~~~~~~~~~~p 495 (589)
++++... ..| ++..+..+..+|...|++++|...++++ +..|+... .+.+...|...| ++|...++++++..-
T Consensus 429 ~~~~l~~--~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~~~ 504 (553)
T PRK12370 429 GDELRSQ--HLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQNS--ERALPTIREFLESEQ 504 (553)
T ss_pred HHHHHHh--ccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhccH--HHHHHHHHHHHHHhh
Confidence 9988653 234 3555777888999999999999999987 44555444 444445666666 478888888776332
Q ss_pred CCCcchHHHHHHHhhcCChHHHHHHHHHhhhC
Q 007808 496 KNPANFVMLSNIYGDLGRWKDVARIKVAMRDT 527 (589)
Q Consensus 496 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 527 (589)
..+.....+..+|.-.|+-+.+..+ +++.+.
T Consensus 505 ~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~ 535 (553)
T PRK12370 505 RIDNNPGLLPLVLVAHGEAIAEKMW-NKFKNE 535 (553)
T ss_pred HhhcCchHHHHHHHHHhhhHHHHHH-HHhhcc
Confidence 2222223377778888888887776 777544
No 68
>PRK12370 invasion protein regulator; Provisional
Probab=99.33 E-value=1.6e-10 Score=118.46 Aligned_cols=208 Identities=11% Similarity=-0.022 Sum_probs=156.1
Q ss_pred ChhHHHHHHHHHHHcCCCCChhHHHHHHHHHHh---------cCChHHHHHHHhhCCC---CCcchHHHHHHHHHhCCCh
Q 007808 310 ALDFSKWVHVYAEYNGYQGNVCVGNALIDMYAK---------CGIIENAVDVFNSMDT---KDLITWNTIISGLAMHGRG 377 (589)
Q Consensus 310 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~---------~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~ 377 (589)
+.++|...++++.+.. |.+...+..+..+|.. .+++++|...+++..+ .+...+..+...+...|++
T Consensus 276 ~~~~A~~~~~~Al~ld-P~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~~ 354 (553)
T PRK12370 276 SLQQALKLLTQCVNMS-PNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNNPQALGLLGLINTIHSEY 354 (553)
T ss_pred HHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCH
Confidence 4578888999888765 4456666666665542 2447889998887764 2556788888888899999
Q ss_pred HHHHHHHHHHHHCCCCC-CHhHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCCh-HHHHHHHHHHHhcCCHHHHHHHH
Q 007808 378 AGALSLFHEMKNAGEMP-DGITFIGILCACTHMGLVEEGLSYFQSMAMDYSIVPQI-EHYGCMVDLLARAGRLAEAVDFV 455 (589)
Q Consensus 378 ~~A~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~ 455 (589)
++|+..|++..+. .| +...+..+...+...|++++|...++++.+ ..|+. ..+..++..+...|++++|+..+
T Consensus 355 ~~A~~~~~~Al~l--~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~---l~P~~~~~~~~~~~~~~~~g~~eeA~~~~ 429 (553)
T PRK12370 355 IVGSLLFKQANLL--SPISADIKYYYGWNLFMAGQLEEALQTINECLK---LDPTRAAAGITKLWITYYHTGIDDAIRLG 429 (553)
T ss_pred HHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh---cCCCChhhHHHHHHHHHhccCHHHHHHHH
Confidence 9999999999885 45 456777788888999999999999998874 34542 23333445566788999999998
Q ss_pred hhCC--CCCC-HHHHHHHHHHHhcCCCHHHHHHHHHHHHccCCCCCcchHHHHHHHhhcCChHHHHHHHHHhh
Q 007808 456 KRMP--IEAD-AVIWANLLGSCRVYKNVELAELALERLTELEPKNPANFVMLSNIYGDLGRWKDVARIKVAMR 525 (589)
Q Consensus 456 ~~~~--~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 525 (589)
+++. ..|+ ...+..+..++...|+.++|...++++....|.+......++..|...| ++|...++++.
T Consensus 430 ~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll 500 (553)
T PRK12370 430 DELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQNS--ERALPTIREFL 500 (553)
T ss_pred HHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhccH--HHHHHHHHHHH
Confidence 8872 2354 4445666677888999999999999988888887778888888888888 47888777765
No 69
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.33 E-value=1.9e-10 Score=112.14 Aligned_cols=201 Identities=16% Similarity=0.172 Sum_probs=144.0
Q ss_pred HHHHHHHhCCChHHHHHHHHHHHHC-----C-CCC-CHhHHHHHHHHHhccCcHHHHHHHHHHhHHhc----CC-CCCh-
Q 007808 366 TIISGLAMHGRGAGALSLFHEMKNA-----G-EMP-DGITFIGILCACTHMGLVEEGLSYFQSMAMDY----SI-VPQI- 432 (589)
Q Consensus 366 ~l~~~~~~~~~~~~A~~~~~~m~~~-----~-~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~----~~-~~~~- 432 (589)
.+...|...+++++|..+|+++..- | ..| -..+++.|..+|.+.|++++|..+++.+.+-. +. .|.+
T Consensus 246 ~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~ 325 (508)
T KOG1840|consen 246 ILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVA 325 (508)
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHH
Confidence 3555666667777777777766541 1 112 23456777777888888888877777654311 11 1222
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHhhCC------CCCC----HHHHHHHHHHHhcCCCHHHHHHHHHHHHccC--------
Q 007808 433 EHYGCMVDLLARAGRLAEAVDFVKRMP------IEAD----AVIWANLLGSCRVYKNVELAELALERLTELE-------- 494 (589)
Q Consensus 433 ~~~~~l~~~~~~~g~~~~A~~~~~~~~------~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-------- 494 (589)
..++.++..+...+++++|..++++.. ..++ ..+++.+...|...|++++|++++++++.+.
T Consensus 326 ~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~ 405 (508)
T KOG1840|consen 326 AQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKD 405 (508)
T ss_pred HHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcC
Confidence 345567778888999999888887651 1222 3678888999999999999999999998843
Q ss_pred CCCCcchHHHHHHHhhcCChHHHHHHHHHhhhCCCccCCccceeeeCCeeeeeccccCCCchHHHHHHHHHHHHcccCCC
Q 007808 495 PKNPANFVMLSNIYGDLGRWKDVARIKVAMRDTGFKKLPGCSSIEVNEVVMLGCLSRELDRKSIVRAEANMIKLLPQNNH 574 (589)
Q Consensus 495 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~ 574 (589)
+.....+..++..|.+.+++++|.++|.+...-. +..| .-+|+--.++-+|+-+|..+|+.++
T Consensus 406 ~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~--~~~g---------------~~~~~~~~~~~nL~~~Y~~~g~~e~ 468 (508)
T KOG1840|consen 406 YGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIM--KLCG---------------PDHPDVTYTYLNLAALYRAQGNYEA 468 (508)
T ss_pred hhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHH--HHhC---------------CCCCchHHHHHHHHHHHHHcccHHH
Confidence 2224467889999999999999999998885322 1111 4578888899999999999999999
Q ss_pred CcchHhhhh
Q 007808 575 PLTFIVVIF 583 (589)
Q Consensus 575 ~~~~~~~~~ 583 (589)
|+++...+.
T Consensus 469 a~~~~~~~~ 477 (508)
T KOG1840|consen 469 AEELEEKVL 477 (508)
T ss_pred HHHHHHHHH
Confidence 999988775
No 70
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.33 E-value=8.3e-09 Score=98.43 Aligned_cols=430 Identities=10% Similarity=0.009 Sum_probs=254.9
Q ss_pred HHHHhccCChHHHHHHHHHHHHhCCCCchHHHhHHHHHHHcCCChHHHHHHHccCCCCCeehHHHHHHHHH--hCCCHHH
Q 007808 107 LKSCVKINALREGEELHCLVLKNGFRANIFVGTALIELYSTGKAIEAAYKVFGEMDERNVVVWTSMINGYI--SCGDIVS 184 (589)
Q Consensus 107 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~--~~g~~~~ 184 (589)
++.+...+++++|.+...+++..+ +.+...+..=+-+..+.+.+++|+.+.+.-........-.+=.+|| +.+..++
T Consensus 19 ln~~~~~~e~e~a~k~~~Kil~~~-pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~~~~~~~fEKAYc~Yrlnk~De 97 (652)
T KOG2376|consen 19 LNRHGKNGEYEEAVKTANKILSIV-PDDEDAIRCKVVALIQLDKYEDALKLIKKNGALLVINSFFFEKAYCEYRLNKLDE 97 (652)
T ss_pred HHHhccchHHHHHHHHHHHHHhcC-CCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhhhcchhhHHHHHHHHHcccHHH
Confidence 455667889999999999999877 4455566666667888999999997766544211111111344444 7899999
Q ss_pred HHHHHHhCCCCChhHHHHHHHHHhcCCChHHHHHHhcccCCCChhhHHHHHHHH-HhcCCHHHHHHHHhhCCCCCchhHH
Q 007808 185 ARCLFELAPERDVILWNTIVSGYIDVRNMIEARKLFDQMPKKDVISWNTMLSGY-ANNGDVEECKRLFEEMPERNVFSWN 263 (589)
Q Consensus 185 a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~A~~~~~~~~~~~~~~~~ 263 (589)
|+..++...+.|..+...-...+.+.|++++|.++|+.+.+.+...+...+.+- ...+-...+. +.+........+|.
T Consensus 98 alk~~~~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~~-~~q~v~~v~e~sye 176 (652)
T KOG2376|consen 98 ALKTLKGLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQVQ-LLQSVPEVPEDSYE 176 (652)
T ss_pred HHHHHhcccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhHH-HHHhccCCCcchHH
Confidence 999999665556667777888899999999999999999775444443333221 1111122222 34444442233333
Q ss_pred ---HHHHHHHhCCChHHHHHHHHHHHHcC-------CCC-CcH-----HHHHHHHHHHHhcCChhHHHHHHHHHHHcCCC
Q 007808 264 ---GLIGGYANNGLFFEVLDAFKRMLTEG-------RVF-PND-----ATIVTVLSACARLGALDFSKWVHVYAEYNGYQ 327 (589)
Q Consensus 264 ---~l~~~~~~~g~~~~A~~~~~~~~~~~-------~~~-p~~-----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 327 (589)
.....+...|++.+|+++++...+.+ ... -+. ..-..+.-++-..|+..+|..++...++....
T Consensus 177 l~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~~~~~ 256 (652)
T KOG2376|consen 177 LLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDIIKRNPA 256 (652)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhcCC
Confidence 34556788999999999999883321 011 011 11223444567889999999999999988743
Q ss_pred CCh---hHHHHHHHHHHhcCChH-HHHHHHhhCCCCC--------------cchHH-HHHHHHHhCCChHHHHHHHHHHH
Q 007808 328 GNV---CVGNALIDMYAKCGIIE-NAVDVFNSMDTKD--------------LITWN-TIISGLAMHGRGAGALSLFHEMK 388 (589)
Q Consensus 328 ~~~---~~~~~l~~~~~~~g~~~-~A~~~~~~~~~~~--------------~~~~~-~l~~~~~~~~~~~~A~~~~~~m~ 388 (589)
..+ ...|.|+..-....-++ .++..++...... ....| .++..| .+..+.+.++.....
T Consensus 257 D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~--tnk~~q~r~~~a~lp 334 (652)
T KOG2376|consen 257 DEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALF--TNKMDQVRELSASLP 334 (652)
T ss_pred CchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH--hhhHHHHHHHHHhCC
Confidence 221 12222322211111111 2222332222111 11111 222222 223333333332221
Q ss_pred HCCCCCCHhHHHHHHHHH--hccCcHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHHhcCCHHHHHHHHh--------h
Q 007808 389 NAGEMPDGITFIGILCAC--THMGLVEEGLSYFQSMAMDYSIVPQ-IEHYGCMVDLLARAGRLAEAVDFVK--------R 457 (589)
Q Consensus 389 ~~~~~p~~~~~~~l~~~~--~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~--------~ 457 (589)
+..|.. .+..++..+ .+...+..+.+++..... +.+-+ ..+...++......|+++.|++++. .
T Consensus 335 --~~~p~~-~~~~ll~~~t~~~~~~~~ka~e~L~~~~~--~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss 409 (652)
T KOG2376|consen 335 --GMSPES-LFPILLQEATKVREKKHKKAIELLLQFAD--GHPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSS 409 (652)
T ss_pred --ccCchH-HHHHHHHHHHHHHHHHHhhhHHHHHHHhc--cCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhh
Confidence 123332 333444433 223357778888777754 22222 4455667788899999999999998 3
Q ss_pred CC-CCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHc----cCC---CCCcchHHHHHHHhhcCChHHHHHHHHHhhhCCC
Q 007808 458 MP-IEADAVIWANLLGSCRVYKNVELAELALERLTE----LEP---KNPANFVMLSNIYGDLGRWKDVARIKVAMRDTGF 529 (589)
Q Consensus 458 ~~-~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~p---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 529 (589)
.+ +.-.+.+...+...+.+.++.+.|..++.+++. ..+ .....+..++..-.+.|+-++|..+++++.
T Consensus 410 ~~~~~~~P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~---- 485 (652)
T KOG2376|consen 410 ILEAKHLPGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEELV---- 485 (652)
T ss_pred hhhhccChhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHH----
Confidence 32 233344555667777888887778888877765 122 223344555666778899999999999996
Q ss_pred ccCCccceeeeCCeeeeeccccCCCchHHHHHHHHHHHHc
Q 007808 530 KKLPGCSSIEVNEVVMLGCLSRELDRKSIVRAEANMIKLL 569 (589)
Q Consensus 530 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 569 (589)
+.+|++...+.-|=-.|..+
T Consensus 486 --------------------k~n~~d~~~l~~lV~a~~~~ 505 (652)
T KOG2376|consen 486 --------------------KFNPNDTDLLVQLVTAYARL 505 (652)
T ss_pred --------------------HhCCchHHHHHHHHHHHHhc
Confidence 45666666666666555444
No 71
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.32 E-value=3.1e-10 Score=110.67 Aligned_cols=239 Identities=18% Similarity=0.188 Sum_probs=155.7
Q ss_pred hHHHHHHHHHhCCChHHHHHHHHHHHHc-----CCCCCcHHHHH-HHHHHHHhcCChhHHHHHHHHHHHcCC-------C
Q 007808 261 SWNGLIGGYANNGLFFEVLDAFKRMLTE-----GRVFPNDATIV-TVLSACARLGALDFSKWVHVYAEYNGY-------Q 327 (589)
Q Consensus 261 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~~~p~~~~~~-~l~~~~~~~~~~~~a~~~~~~~~~~~~-------~ 327 (589)
+...+...|...|++++|..+++..++. |...|...+.. .+...|...+++++|..+|+.+...-. +
T Consensus 201 ~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~ 280 (508)
T KOG1840|consen 201 TLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHP 280 (508)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCH
Confidence 3444777788888888888888777664 11134433322 255556666666666666665543210 1
Q ss_pred CChhHHHHHHHHHHhcCChHHHHHHHhhCCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHHCCC-CCCHh-HHHHHHHH
Q 007808 328 GNVCVGNALIDMYAKCGIIENAVDVFNSMDTKDLITWNTIISGLAMHGRGAGALSLFHEMKNAGE-MPDGI-TFIGILCA 405 (589)
Q Consensus 328 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~-~p~~~-~~~~l~~~ 405 (589)
--..+++.|..+|.+.|++++|...++ .|++++++. .|. .|... .++.++..
T Consensus 281 ~va~~l~nLa~ly~~~GKf~EA~~~~e------------------------~Al~I~~~~--~~~~~~~v~~~l~~~~~~ 334 (508)
T KOG1840|consen 281 AVAATLNNLAVLYYKQGKFAEAEEYCE------------------------RALEIYEKL--LGASHPEVAAQLSELAAI 334 (508)
T ss_pred HHHHHHHHHHHHHhccCChHHHHHHHH------------------------HHHHHHHHh--hccChHHHHHHHHHHHHH
Confidence 112234444444555555555544432 244444441 122 22222 35667777
Q ss_pred HhccCcHHHHHHHHHHhHHhcC--CCCC----hHHHHHHHHHHHhcCCHHHHHHHHhhCC---------CCCC-HHHHHH
Q 007808 406 CTHMGLVEEGLSYFQSMAMDYS--IVPQ----IEHYGCMVDLLARAGRLAEAVDFVKRMP---------IEAD-AVIWAN 469 (589)
Q Consensus 406 ~~~~g~~~~A~~~~~~~~~~~~--~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~---------~~p~-~~~~~~ 469 (589)
|...+++++|..+++...+... ..++ ..+++.|...|...|++++|.++++++. ..+. ...++.
T Consensus 335 ~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~ 414 (508)
T KOG1840|consen 335 LQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQ 414 (508)
T ss_pred HHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHH
Confidence 8888999999988887755332 2222 4678899999999999999999998871 1222 455677
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHc----cCCCC---CcchHHHHHHHhhcCChHHHHHHHHHhh
Q 007808 470 LLGSCRVYKNVELAELALERLTE----LEPKN---PANFVMLSNIYGDLGRWKDVARIKVAMR 525 (589)
Q Consensus 470 l~~~~~~~g~~~~A~~~~~~~~~----~~p~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 525 (589)
+...|.+.+++++|.++|.+... ..|++ ..+|.+|+.+|.+.|++++|+++.+.+.
T Consensus 415 la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 415 LAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred HHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 88889999999999999988876 34544 4578899999999999999999988885
No 72
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.32 E-value=1.5e-08 Score=92.36 Aligned_cols=266 Identities=10% Similarity=-0.050 Sum_probs=189.5
Q ss_pred CChhhHHHHHHHHHhcCCHHHHHHHHhhCCCCCchh---HHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCcHHHHHHHH
Q 007808 226 KDVISWNTMLSGYANNGDVEECKRLFEEMPERNVFS---WNGLIGGYANNGLFFEVLDAFKRMLTEGRVFPNDATIVTVL 302 (589)
Q Consensus 226 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~ 302 (589)
.|+.....+...+...|+.++|+..|++...-|+.+ .....-.+.+.|++++...+...+.... .-....|..-+
T Consensus 230 ~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~--~~ta~~wfV~~ 307 (564)
T KOG1174|consen 230 CNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKV--KYTASHWFVHA 307 (564)
T ss_pred ccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhh--hcchhhhhhhh
Confidence 455566666677777777777777777665433322 2222334456777777777776665532 22333333334
Q ss_pred HHHHhcCChhHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHhhCC--C-CCcchHHHHHHHHHhCCChHH
Q 007808 303 SACARLGALDFSKWVHVYAEYNGYQGNVCVGNALIDMYAKCGIIENAVDVFNSMD--T-KDLITWNTIISGLAMHGRGAG 379 (589)
Q Consensus 303 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~-~~~~~~~~l~~~~~~~~~~~~ 379 (589)
.......+++.|..+-++.++.+ +.+...+-.-...+...|++++|.--|+... . -+...|..|+.+|...|++.+
T Consensus 308 ~~l~~~K~~~rAL~~~eK~I~~~-~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~kE 386 (564)
T KOG1174|consen 308 QLLYDEKKFERALNFVEKCIDSE-PRNHEALILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFKE 386 (564)
T ss_pred hhhhhhhhHHHHHHHHHHHhccC-cccchHHHhccHHHHhccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHHH
Confidence 44455667777777777777654 3455555555667778888999888888665 3 367889999999999999999
Q ss_pred HHHHHHHHHHCCCCCCHhHHHHHH-HHHh-ccCcHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHHhcCCHHHHHHHHh
Q 007808 380 ALSLFHEMKNAGEMPDGITFIGIL-CACT-HMGLVEEGLSYFQSMAMDYSIVPQ-IEHYGCMVDLLARAGRLAEAVDFVK 456 (589)
Q Consensus 380 A~~~~~~m~~~~~~p~~~~~~~l~-~~~~-~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~ 456 (589)
|...-+..... ++.+..+...+. ..|. ...--++|.+++++.+ .+.|+ ....+.+...+...|+.++++.+++
T Consensus 387 A~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L---~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe 462 (564)
T KOG1174|consen 387 ANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSL---KINPIYTPAVNLIAELCQVEGPTKDIIKLLE 462 (564)
T ss_pred HHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhhh---ccCCccHHHHHHHHHHHHhhCccchHHHHHH
Confidence 98887776653 344666665553 3333 3344678888888776 55677 4566778889999999999999999
Q ss_pred hC-CCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHccCCCCC
Q 007808 457 RM-PIEADAVIWANLLGSCRVYKNVELAELALERLTELEPKNP 498 (589)
Q Consensus 457 ~~-~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~ 498 (589)
+. ...||....+.|...+...+.+++|.+.|..+++++|++.
T Consensus 463 ~~L~~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~~ 505 (564)
T KOG1174|consen 463 KHLIIFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQDPKSK 505 (564)
T ss_pred HHHhhccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCccch
Confidence 87 5789999999999999999999999999999999999855
No 73
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.32 E-value=1.6e-08 Score=100.26 Aligned_cols=46 Identities=22% Similarity=0.225 Sum_probs=41.9
Q ss_pred CCHHHHHHHHHHHHccCCCCCcchHHHHHHHhhcCChHHHHHHHHH
Q 007808 478 KNVELAELALERLTELEPKNPANFVMLSNIYGDLGRWKDVARIKVA 523 (589)
Q Consensus 478 g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 523 (589)
.=.++|.++++.+.+..|++..+|..--++|.|.|++--|++.+++
T Consensus 471 dPLe~A~kfl~pL~~~a~~~~et~~laFeVy~Rk~K~LLaLqaL~k 516 (517)
T PF12569_consen 471 DPLEEAMKFLKPLLELAPDNIETHLLAFEVYLRKGKYLLALQALKK 516 (517)
T ss_pred cHHHHHHHHHHHHHHhCccchhhHHHHhHHHHhcCcHHHHHHHHHh
Confidence 3468899999999999999999999999999999999999988765
No 74
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.31 E-value=2.3e-10 Score=108.72 Aligned_cols=261 Identities=14% Similarity=0.094 Sum_probs=178.5
Q ss_pred HhcCChhHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHhhCCCC---CcchHHHHHHHHHhCCChHHHHH
Q 007808 306 ARLGALDFSKWVHVYAEYNGYQGNVCVGNALIDMYAKCGIIENAVDVFNSMDTK---DLITWNTIISGLAMHGRGAGALS 382 (589)
Q Consensus 306 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~ 382 (589)
.+.|++.+|.-.|+..++.+ |.+...|..|.......++-..|+..+.+..+- |......|.-.|...|.-..|+.
T Consensus 296 m~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~Al~ 374 (579)
T KOG1125|consen 296 MKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQALK 374 (579)
T ss_pred HhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHHHHH
Confidence 44555555555555555554 445556666666666666666666666555432 33445555556666666667777
Q ss_pred HHHHHHHCCCCCCHhHHHHHH-----------HHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHH
Q 007808 383 LFHEMKNAGEMPDGITFIGIL-----------CACTHMGLVEEGLSYFQSMAMDYSIVPQIEHYGCMVDLLARAGRLAEA 451 (589)
Q Consensus 383 ~~~~m~~~~~~p~~~~~~~l~-----------~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 451 (589)
.|+.-+... |. |..+. ..+.....+....++|-++....+..+|+.++..|.-.|--.|.+++|
T Consensus 375 ~L~~Wi~~~--p~---y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdra 449 (579)
T KOG1125|consen 375 MLDKWIRNK--PK---YVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRA 449 (579)
T ss_pred HHHHHHHhC--cc---chhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHH
Confidence 777665432 11 00000 122223345556667777767667678888999999999999999999
Q ss_pred HHHHhhC-CCCC-CHHHHHHHHHHHhcCCCHHHHHHHHHHHHccCCCCCcchHHHHHHHhhcCChHHHHHHHHHhhhCCC
Q 007808 452 VDFVKRM-PIEA-DAVIWANLLGSCRVYKNVELAELALERLTELEPKNPANFVMLSNIYGDLGRWKDVARIKVAMRDTGF 529 (589)
Q Consensus 452 ~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 529 (589)
++.|+.+ .++| |...||.|...++...+.++|+..|.+++++.|.-..+.++|+..|...|.|++|.+.+=++....-
T Consensus 450 iDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~mq~ 529 (579)
T KOG1125|consen 450 VDCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALSMQR 529 (579)
T ss_pred HHHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHhhh
Confidence 9999988 5677 6788999999999999999999999999999999999999999999999999999998766642211
Q ss_pred ccCCccceeeeCCeeeeeccccCCCchHHHHHHHHHHHHcccCC-----CCcchHhhhhhcc
Q 007808 530 KKLPGCSSIEVNEVVMLGCLSRELDRKSIVRAEANMIKLLPQNN-----HPLTFIVVIFSTF 586 (589)
Q Consensus 530 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~-----~~~~~~~~~~~~~ 586 (589)
+..- +. ..-.+ +..++..|..++..+++.+ ..-.-++.|.+.|
T Consensus 530 ks~~-----------~~--~~~~~-se~iw~tLR~als~~~~~D~l~~a~~~~nl~~l~~~f 577 (579)
T KOG1125|consen 530 KSRN-----------HN--KAPMA-SENIWQTLRLALSAMNRSDLLQEAAPSRNLSALKAEF 577 (579)
T ss_pred cccc-----------cc--cCCcc-hHHHHHHHHHHHHHcCCchHHHHhccccCHHHHHHHh
Confidence 1000 00 00111 4679999999998898886 2344566666666
No 75
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.31 E-value=2.6e-10 Score=106.89 Aligned_cols=185 Identities=16% Similarity=0.116 Sum_probs=94.9
Q ss_pred HHHHHHHHHHhcCChHHHHHHHhhCCC---CCcchHHHHHHHHHhCCChHHHHHHHHHHHHCCCCC-CHhHHHHHHHHHh
Q 007808 332 VGNALIDMYAKCGIIENAVDVFNSMDT---KDLITWNTIISGLAMHGRGAGALSLFHEMKNAGEMP-DGITFIGILCACT 407 (589)
Q Consensus 332 ~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p-~~~~~~~l~~~~~ 407 (589)
.+..+...|...|+.++|...|++..+ .+...|+.+...+...|++++|...|++..+ +.| +..++..+..++.
T Consensus 66 ~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~--l~P~~~~a~~~lg~~l~ 143 (296)
T PRK11189 66 LHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYEAFDSVLE--LDPTYNYAYLNRGIALY 143 (296)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHH
Confidence 344445555555666666555555442 2345566666666666666666666666665 344 3445555666666
Q ss_pred ccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHhhC-C-CCCCHHHHHHHHHHHhcCCCHHHHHH
Q 007808 408 HMGLVEEGLSYFQSMAMDYSIVPQIEHYGCMVDLLARAGRLAEAVDFVKRM-P-IEADAVIWANLLGSCRVYKNVELAEL 485 (589)
Q Consensus 408 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~-~~p~~~~~~~l~~~~~~~g~~~~A~~ 485 (589)
..|++++|.+.+++..+. .|+..........+...+++++|.+.+++. . .+|+...+ .+... ..|+...+ +
T Consensus 144 ~~g~~~eA~~~~~~al~~---~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~~~~~~~~~-~~~~~--~lg~~~~~-~ 216 (296)
T PRK11189 144 YGGRYELAQDDLLAFYQD---DPNDPYRALWLYLAESKLDPKQAKENLKQRYEKLDKEQWGW-NIVEF--YLGKISEE-T 216 (296)
T ss_pred HCCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHccCCHHHHHHHHHHHHhhCCccccHH-HHHHH--HccCCCHH-H
Confidence 666666666666666532 233221111122233455666666666543 1 22222111 11111 23333222 1
Q ss_pred HHHHHH-------ccCCCCCcchHHHHHHHhhcCChHHHHHHHHHhh
Q 007808 486 ALERLT-------ELEPKNPANFVMLSNIYGDLGRWKDVARIKVAMR 525 (589)
Q Consensus 486 ~~~~~~-------~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 525 (589)
.++.+. ++.|+.+.+|..++.++.+.|++++|+..|++..
T Consensus 217 ~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al 263 (296)
T PRK11189 217 LMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLAL 263 (296)
T ss_pred HHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 222222 3444555667777777777777777777776664
No 76
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.30 E-value=7.3e-11 Score=103.79 Aligned_cols=219 Identities=13% Similarity=0.118 Sum_probs=118.0
Q ss_pred HHHHHHHhcCChHHHHHHHhhCC--CCCcchHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHhHH-HHHHHHHhccCc
Q 007808 335 ALIDMYAKCGIIENAVDVFNSMD--TKDLITWNTIISGLAMHGRGAGALSLFHEMKNAGEMPDGITF-IGILCACTHMGL 411 (589)
Q Consensus 335 ~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~-~~l~~~~~~~g~ 411 (589)
.+..+|.+.|-+.+|.+.|+.-. .|-+.||..|-.+|.+..+++.|+.++.+-.+. .|-.+|| ....+.+...++
T Consensus 228 Q~gkCylrLgm~r~AekqlqssL~q~~~~dTfllLskvY~ridQP~~AL~~~~~gld~--fP~~VT~l~g~ARi~eam~~ 305 (478)
T KOG1129|consen 228 QMGKCYLRLGMPRRAEKQLQSSLTQFPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS--FPFDVTYLLGQARIHEAMEQ 305 (478)
T ss_pred HHHHHHHHhcChhhhHHHHHHHhhcCCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc--CCchhhhhhhhHHHHHHHHh
Confidence 44555555555555555555433 234445555555555555555555555555442 3333333 223344445555
Q ss_pred HHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHhhC---CCCCCHHHHHHHHHHHhcCCCHHHHHHHHH
Q 007808 412 VEEGLSYFQSMAMDYSIVPQIEHYGCMVDLLARAGRLAEAVDFVKRM---PIEADAVIWANLLGSCRVYKNVELAELALE 488 (589)
Q Consensus 412 ~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~---~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 488 (589)
.++|.++|+...+. .+.+++...++...|.-.++.+-|+.+++++ + --++..|+.+.-+|.-.++++-++-.|+
T Consensus 306 ~~~a~~lYk~vlk~--~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG-~~speLf~NigLCC~yaqQ~D~~L~sf~ 382 (478)
T KOG1129|consen 306 QEDALQLYKLVLKL--HPINVEAIACIAVGYFYDNNPEMALRYYRRILQMG-AQSPELFCNIGLCCLYAQQIDLVLPSFQ 382 (478)
T ss_pred HHHHHHHHHHHHhc--CCccceeeeeeeeccccCCChHHHHHHHHHHHHhc-CCChHHHhhHHHHHHhhcchhhhHHHHH
Confidence 55555555555431 1223333344444455555555555555543 2 1234445555555555555555555555
Q ss_pred HHHccC--CC-CCcchHHHHHHHhhcCChHHHHHHHHHhhhCCCccCCccceeeeCCeeeeeccccCCCchHHHHHHHHH
Q 007808 489 RLTELE--PK-NPANFVMLSNIYGDLGRWKDVARIKVAMRDTGFKKLPGCSSIEVNEVVMLGCLSRELDRKSIVRAEANM 565 (589)
Q Consensus 489 ~~~~~~--p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~ 565 (589)
+++... |+ -..+|++|+.+....|++.-|.+.++- ++..+|++++++++|+-+
T Consensus 383 RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrl------------------------aL~~d~~h~ealnNLavL 438 (478)
T KOG1129|consen 383 RALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRL------------------------ALTSDAQHGEALNNLAVL 438 (478)
T ss_pred HHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHH------------------------HhccCcchHHHHHhHHHH
Confidence 555421 21 123455555555555555555555443 457899999999999999
Q ss_pred HHHcccCCCCcchHhhh
Q 007808 566 IKLLPQNNHPLTFIVVI 582 (589)
Q Consensus 566 ~~~~~~~~~~~~~~~~~ 582 (589)
..+.|+...|-.+++.-
T Consensus 439 ~~r~G~i~~Arsll~~A 455 (478)
T KOG1129|consen 439 AARSGDILGARSLLNAA 455 (478)
T ss_pred HhhcCchHHHHHHHHHh
Confidence 99999998887766543
No 77
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.28 E-value=5.4e-09 Score=92.88 Aligned_cols=298 Identities=11% Similarity=0.091 Sum_probs=168.7
Q ss_pred HHHHHHhcCCChHHHHHHhcccCCCChhhHHHHH---HHHHhcCCHHHHHHHHhhCCC--CCchhH-HHHHHHHHhCCCh
Q 007808 202 TIVSGYIDVRNMIEARKLFDQMPKKDVISWNTML---SGYANNGDVEECKRLFEEMPE--RNVFSW-NGLIGGYANNGLF 275 (589)
Q Consensus 202 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~---~~~~~~~~~~~A~~~~~~~~~--~~~~~~-~~l~~~~~~~g~~ 275 (589)
.+...+...|++..|+.-|....+.|+..|.++. ..|...|+...|+.-+.++.+ ||...- -.-...+.++|.+
T Consensus 43 ElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQRg~vllK~Gel 122 (504)
T KOG0624|consen 43 ELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQRGVVLLKQGEL 122 (504)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHHhchhhhhcccH
Confidence 3444555555566666555555554444444433 355556666666555555554 332211 1122345667777
Q ss_pred HHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHhh
Q 007808 276 FEVLDAFKRMLTEGRVFPNDATIVTVLSACARLGALDFSKWVHVYAEYNGYQGNVCVGNALIDMYAKCGIIENAVDVFNS 355 (589)
Q Consensus 276 ~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 355 (589)
++|..-|+..++.. |+..+- ..+..+.-..++- ......+..+...|+...|+.....
T Consensus 123 e~A~~DF~~vl~~~---~s~~~~---~eaqskl~~~~e~----------------~~l~~ql~s~~~~GD~~~ai~~i~~ 180 (504)
T KOG0624|consen 123 EQAEADFDQVLQHE---PSNGLV---LEAQSKLALIQEH----------------WVLVQQLKSASGSGDCQNAIEMITH 180 (504)
T ss_pred HHHHHHHHHHHhcC---CCcchh---HHHHHHHHhHHHH----------------HHHHHHHHHHhcCCchhhHHHHHHH
Confidence 77777777776654 322110 0111110000000 0011122233445555566555555
Q ss_pred CCC---CCcchHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCCh
Q 007808 356 MDT---KDLITWNTIISGLAMHGRGAGALSLFHEMKNAGEMPDGITFIGILCACTHMGLVEEGLSYFQSMAMDYSIVPQI 432 (589)
Q Consensus 356 ~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 432 (589)
+.+ -|...|..-..+|...|++..|+.-++...+.. ..+..++.-+-..+...|+.+.++..+++.+ .+.||.
T Consensus 181 llEi~~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs-~DnTe~~ykis~L~Y~vgd~~~sL~~iRECL---KldpdH 256 (504)
T KOG0624|consen 181 LLEIQPWDASLRQARAKCYIAEGEPKKAIHDLKQASKLS-QDNTEGHYKISQLLYTVGDAENSLKEIRECL---KLDPDH 256 (504)
T ss_pred HHhcCcchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHhhhhHHHHHHHHHHHH---ccCcch
Confidence 442 245555555666666666666666655555432 2233344444455556666666666655554 344542
Q ss_pred H----HHHHH---------HHHHHhcCCHHHHHHHHhhC-CCCCC-----HHHHHHHHHHHhcCCCHHHHHHHHHHHHcc
Q 007808 433 E----HYGCM---------VDLLARAGRLAEAVDFVKRM-PIEAD-----AVIWANLLGSCRVYKNVELAELALERLTEL 493 (589)
Q Consensus 433 ~----~~~~l---------~~~~~~~g~~~~A~~~~~~~-~~~p~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 493 (589)
. .|..| +......++|.++++..++. ...|. ...+..+..++...|++.+|++...+++++
T Consensus 257 K~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~ 336 (504)
T KOG0624|consen 257 KLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDI 336 (504)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhc
Confidence 1 12111 12344567777777776665 44554 233445557788999999999999999999
Q ss_pred CCCCCcchHHHHHHHhhcCChHHHHHHHHHhh
Q 007808 494 EPKNPANFVMLSNIYGDLGRWKDVARIKVAMR 525 (589)
Q Consensus 494 ~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 525 (589)
+|+|..++..-+.+|.--..|++|+.-|++..
T Consensus 337 d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~ 368 (504)
T KOG0624|consen 337 DPDDVQVLCDRAEAYLGDEMYDDAIHDYEKAL 368 (504)
T ss_pred CchHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999986
No 78
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.27 E-value=3.1e-09 Score=99.66 Aligned_cols=234 Identities=10% Similarity=-0.080 Sum_probs=160.5
Q ss_pred CCChHHHHHHHHHHHHcCCCCCc--HHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHH
Q 007808 272 NGLFFEVLDAFKRMLTEGRVFPN--DATIVTVLSACARLGALDFSKWVHVYAEYNGYQGNVCVGNALIDMYAKCGIIENA 349 (589)
Q Consensus 272 ~g~~~~A~~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 349 (589)
.+..+.++.-+.+++...+..|+ ...|......+...|+.+.|...|..+.+.. |.+...++.+...+...|++++|
T Consensus 39 ~~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~A 117 (296)
T PRK11189 39 TLQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDAA 117 (296)
T ss_pred chHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHHH
Confidence 34567777777777765423333 2456666777888888888888888888765 55678888899999999999999
Q ss_pred HHHHhhCCC--C-CcchHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCcHHHHHHHHHHhHHhc
Q 007808 350 VDVFNSMDT--K-DLITWNTIISGLAMHGRGAGALSLFHEMKNAGEMPDGITFIGILCACTHMGLVEEGLSYFQSMAMDY 426 (589)
Q Consensus 350 ~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 426 (589)
...|++..+ | +..+|..+..++...|++++|++.|++..+. .|+..........+...++.++|...+++...
T Consensus 118 ~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~--~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~-- 193 (296)
T PRK11189 118 YEAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQD--DPNDPYRALWLYLAESKLDPKQAKENLKQRYE-- 193 (296)
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHccCCHHHHHHHHHHHHh--
Confidence 999988763 3 4567888888899999999999999999884 55443222222234456789999999976643
Q ss_pred CCCCChHHHHHHHHHHHhcCCHH--HHHHHHhhC-CC----CC-CHHHHHHHHHHHhcCCCHHHHHHHHHHHHccCC-CC
Q 007808 427 SIVPQIEHYGCMVDLLARAGRLA--EAVDFVKRM-PI----EA-DAVIWANLLGSCRVYKNVELAELALERLTELEP-KN 497 (589)
Q Consensus 427 ~~~~~~~~~~~l~~~~~~~g~~~--~A~~~~~~~-~~----~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~ 497 (589)
...|+...+ .+.. ...|+.. ++.+.+.+. .. .| ....|..+...+.+.|++++|+..|+++++.+| +.
T Consensus 194 ~~~~~~~~~-~~~~--~~lg~~~~~~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~~~~ 270 (296)
T PRK11189 194 KLDKEQWGW-NIVE--FYLGKISEETLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNVYNF 270 (296)
T ss_pred hCCccccHH-HHHH--HHccCCCHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCchH
Confidence 223333222 2333 3344443 333333322 11 12 235788888999999999999999999999997 55
Q ss_pred CcchHHHHHHHhhcCC
Q 007808 498 PANFVMLSNIYGDLGR 513 (589)
Q Consensus 498 ~~~~~~l~~~~~~~g~ 513 (589)
++....++......++
T Consensus 271 ~e~~~~~~e~~~~~~~ 286 (296)
T PRK11189 271 VEHRYALLELALLGQD 286 (296)
T ss_pred HHHHHHHHHHHHHHhh
Confidence 5566666665554443
No 79
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.27 E-value=4.7e-09 Score=99.16 Aligned_cols=166 Identities=12% Similarity=0.111 Sum_probs=120.4
Q ss_pred HHHHHHhCCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChH-HHHHHHHHHHhc
Q 007808 367 IISGLAMHGRGAGALSLFHEMKNAGEMPDGITFIGILCACTHMGLVEEGLSYFQSMAMDYSIVPQIE-HYGCMVDLLARA 445 (589)
Q Consensus 367 l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~ 445 (589)
+..+|.+.++++.++..|++.......|+.. .+....+++....+... -+.|... -...-.+.+.+.
T Consensus 304 ~g~a~~k~~~~~~ai~~~~kaLte~Rt~~~l---------s~lk~~Ek~~k~~e~~a---~~~pe~A~e~r~kGne~Fk~ 371 (539)
T KOG0548|consen 304 LGNAYTKREDYEGAIKYYQKALTEHRTPDLL---------SKLKEAEKALKEAERKA---YINPEKAEEEREKGNEAFKK 371 (539)
T ss_pred hhhhhhhHHhHHHHHHHHHHHhhhhcCHHHH---------HHHHHHHHHHHHHHHHH---hhChhHHHHHHHHHHHHHhc
Confidence 4456667788888888888876644444322 22233444444443331 3334431 112236678889
Q ss_pred CCHHHHHHHHhhC-CCCC-CHHHHHHHHHHHhcCCCHHHHHHHHHHHHccCCCCCcchHHHHHHHhhcCChHHHHHHHHH
Q 007808 446 GRLAEAVDFVKRM-PIEA-DAVIWANLLGSCRVYKNVELAELALERLTELEPKNPANFVMLSNIYGDLGRWKDVARIKVA 523 (589)
Q Consensus 446 g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 523 (589)
|++..|+..|.++ ...| |...|.....+|.+.|.+..|+.-.+..++++|+.+..|..-+.++.-..+|++|.+.|++
T Consensus 372 gdy~~Av~~YteAIkr~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~e 451 (539)
T KOG0548|consen 372 GDYPEAVKHYTEAIKRDPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQE 451 (539)
T ss_pred cCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999887 3445 6677888888889999999999999999999999888999999999999999999999888
Q ss_pred hhhCCCccCCccceeeeCCeeeeeccccCCCchHHHHHHHHHHHH
Q 007808 524 MRDTGFKKLPGCSSIEVNEVVMLGCLSRELDRKSIVRAEANMIKL 568 (589)
Q Consensus 524 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~ 568 (589)
.. +++|++.++.+.+.+.+..
T Consensus 452 al------------------------e~dp~~~e~~~~~~rc~~a 472 (539)
T KOG0548|consen 452 AL------------------------ELDPSNAEAIDGYRRCVEA 472 (539)
T ss_pred HH------------------------hcCchhHHHHHHHHHHHHH
Confidence 75 7788888888888777764
No 80
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.26 E-value=5.2e-08 Score=94.15 Aligned_cols=100 Identities=9% Similarity=0.079 Sum_probs=65.9
Q ss_pred CCChHHHH--HHHHHHHhcCCHHHHHHHHhhC-CCCCCH-HHHHHHHHHHhcCCCHHHHHHHHHHHHccCCCCCcchHHH
Q 007808 429 VPQIEHYG--CMVDLLARAGRLAEAVDFVKRM-PIEADA-VIWANLLGSCRVYKNVELAELALERLTELEPKNPANFVML 504 (589)
Q Consensus 429 ~~~~~~~~--~l~~~~~~~g~~~~A~~~~~~~-~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l 504 (589)
+|.+..|. .++..|-+.|+++.|...++.+ ...|+. ..|..-...+.+.|++++|...++++.+++-.|...-..-
T Consensus 366 ~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdHTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD~aDR~INsKc 445 (700)
T KOG1156|consen 366 PPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDHTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELDTADRAINSKC 445 (700)
T ss_pred CchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhccchhHHHHHHH
Confidence 34444443 4566677777788887777776 445543 3343444667777788888888888777776556555566
Q ss_pred HHHHhhcCChHHHHHHHHHhhhCC
Q 007808 505 SNIYGDLGRWKDVARIKVAMRDTG 528 (589)
Q Consensus 505 ~~~~~~~g~~~~A~~~~~~~~~~~ 528 (589)
+.-..++++.++|.++..+..+.|
T Consensus 446 AKYmLrAn~i~eA~~~~skFTr~~ 469 (700)
T KOG1156|consen 446 AKYMLRANEIEEAEEVLSKFTREG 469 (700)
T ss_pred HHHHHHccccHHHHHHHHHhhhcc
Confidence 777777777777777777665544
No 81
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.26 E-value=3.3e-10 Score=95.20 Aligned_cols=162 Identities=7% Similarity=-0.074 Sum_probs=140.5
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHhhC-CCCC-CHHHHHHHHHHHh
Q 007808 398 TFIGILCACTHMGLVEEGLSYFQSMAMDYSIVPQIEHYGCMVDLLARAGRLAEAVDFVKRM-PIEA-DAVIWANLLGSCR 475 (589)
Q Consensus 398 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~ 475 (589)
+...|.-.|...|++..|..-+++.++. -+.+..+|..+...|.+.|..+.|.+.|+++ ...| +....|.....++
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~~--DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC 114 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALEH--DPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLC 114 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHH
Confidence 4666778899999999999999999752 2334678888999999999999999999987 5566 5677888999999
Q ss_pred cCCCHHHHHHHHHHHHc--cCCCCCcchHHHHHHHhhcCChHHHHHHHHHhhhCCCccCCccceeeeCCeeeeeccccCC
Q 007808 476 VYKNVELAELALERLTE--LEPKNPANFVMLSNIYGDLGRWKDVARIKVAMRDTGFKKLPGCSSIEVNEVVMLGCLSREL 553 (589)
Q Consensus 476 ~~g~~~~A~~~~~~~~~--~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 553 (589)
.+|++++|...|++++. .-|..+.++.+++.|-.++|+.+.|.+.+++.. +++|
T Consensus 115 ~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL------------------------~~dp 170 (250)
T COG3063 115 AQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRAL------------------------ELDP 170 (250)
T ss_pred hCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHH------------------------HhCc
Confidence 99999999999999998 346667899999999999999999999999986 8999
Q ss_pred CchHHHHHHHHHHHHcccCCCCcchHhhhhhc
Q 007808 554 DRKSIVRAEANMIKLLPQNNHPLTFIVVIFST 585 (589)
Q Consensus 554 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 585 (589)
+++.....++....+-|+...|-.++..+..+
T Consensus 171 ~~~~~~l~~a~~~~~~~~y~~Ar~~~~~~~~~ 202 (250)
T COG3063 171 QFPPALLELARLHYKAGDYAPARLYLERYQQR 202 (250)
T ss_pred CCChHHHHHHHHHHhcccchHHHHHHHHHHhc
Confidence 99999999999999999999998888877654
No 82
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.25 E-value=6.6e-10 Score=110.41 Aligned_cols=272 Identities=13% Similarity=0.100 Sum_probs=207.4
Q ss_pred HHHHHHHHcCCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHhhCCCC
Q 007808 280 DAFKRMLTEGRVFPNDATIVTVLSACARLGALDFSKWVHVYAEYNGYQGNVCVGNALIDMYAKCGIIENAVDVFNSMDTK 359 (589)
Q Consensus 280 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 359 (589)
.++-.+...| +.|+..||..++.-||..|+.+.|. +|..|.-...+.+...++.++.+....++.+.+. .|
T Consensus 11 nfla~~e~~g-i~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-------ep 81 (1088)
T KOG4318|consen 11 NFLALHEISG-ILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-------EP 81 (1088)
T ss_pred hHHHHHHHhc-CCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-------CC
Confidence 3566777888 9999999999999999999999999 9999999988999999999999999888877665 67
Q ss_pred CcchHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHH
Q 007808 360 DLITWNTIISGLAMHGRGAGALSLFHEMKNAGEMPDGITFIGILCACTHMGLVEEGLSYFQSMAMDYSIVPQIEHYGCMV 439 (589)
Q Consensus 360 ~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~ 439 (589)
...+|..|..+|...||..- ++..++ ....+...+...|.-..-..++..+.-.-+..||..+ .+
T Consensus 82 ~aDtyt~Ll~ayr~hGDli~-fe~veq-----------dLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n---~i 146 (1088)
T KOG4318|consen 82 LADTYTNLLKAYRIHGDLIL-FEVVEQ-----------DLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAEN---AI 146 (1088)
T ss_pred chhHHHHHHHHHHhccchHH-HHHHHH-----------HHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHH---HH
Confidence 88899999999999999776 333332 2334555566667766667777665433345566543 45
Q ss_pred HHHHhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHh-cCCCHHHHHHHHHHHHccCCCCCcchHHHHHHHhhcCChHHHH
Q 007808 440 DLLARAGRLAEAVDFVKRMPIEADAVIWANLLGSCR-VYKNVELAELALERLTELEPKNPANFVMLSNIYGDLGRWKDVA 518 (589)
Q Consensus 440 ~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~-~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~ 518 (589)
....-.|-++.+++++..++...-...+..+++-+. ....+++-..+.+...+ .|+ +.++..+..+-..+|+.+-|.
T Consensus 147 lllv~eglwaqllkll~~~Pvsa~~~p~~vfLrqnv~~ntpvekLl~~cksl~e-~~~-s~~l~a~l~~alaag~~d~Ak 224 (1088)
T KOG4318|consen 147 LLLVLEGLWAQLLKLLAKVPVSAWNAPFQVFLRQNVVDNTPVEKLLNMCKSLVE-APT-SETLHAVLKRALAAGDVDGAK 224 (1088)
T ss_pred HHHHHHHHHHHHHHHHhhCCcccccchHHHHHHHhccCCchHHHHHHHHHHhhc-CCC-hHHHHHHHHHHHhcCchhhHH
Confidence 566778889999999998863221111222343333 34455666666666666 665 889999999999999999999
Q ss_pred HHHHHhhhCCCccCCccceeeeCCeeeeeccccCCCchHHHHHHHHHHHHcccCCCCcchHhhhhhccc
Q 007808 519 RIKVAMRDTGFKKLPGCSSIEVNEVVMLGCLSRELDRKSIVRAEANMIKLLPQNNHPLTFIVVIFSTFA 587 (589)
Q Consensus 519 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 587 (589)
.++++|+++|++..+++.|..+-. .-+.+.+-..+..++ +.|..+.-.|..+.+.++|+
T Consensus 225 ~ll~emke~gfpir~HyFwpLl~g---------~~~~q~~e~vlrgmq-e~gv~p~seT~adyvip~l~ 283 (1088)
T KOG4318|consen 225 NLLYEMKEKGFPIRAHYFWPLLLG---------INAAQVFEFVLRGMQ-EKGVQPGSETQADYVIPQLS 283 (1088)
T ss_pred HHHHHHHHcCCCcccccchhhhhc---------CccchHHHHHHHHHH-HhcCCCCcchhHHHHHhhhc
Confidence 999999999999999998876555 235567777777776 88999999999999999986
No 83
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.25 E-value=1.3e-07 Score=91.47 Aligned_cols=438 Identities=14% Similarity=0.071 Sum_probs=227.0
Q ss_pred cCCChhHHHHHHHHhhhCCCCCCcccHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchHHHhHHHHHHHcCCChHHHHH
Q 007808 77 QNEFHRTVVVLFTQMKKLDAMPNCFTFPIVLKSCVKINALREGEELHCLVLKNGFRANIFVGTALIELYSTGKAIEAAYK 156 (589)
Q Consensus 77 ~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 156 (589)
..+++...++..+.+.+. .+-...|.....-.+...|+.++|.......++.. .-+.+.|..+.-.+-...++++|++
T Consensus 19 E~kQYkkgLK~~~~iL~k-~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d-~~S~vCwHv~gl~~R~dK~Y~eaiK 96 (700)
T KOG1156|consen 19 ETKQYKKGLKLIKQILKK-FPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRND-LKSHVCWHVLGLLQRSDKKYDEAIK 96 (700)
T ss_pred HHHHHHhHHHHHHHHHHh-CCccchhHHhccchhhcccchHHHHHHHHHHhccC-cccchhHHHHHHHHhhhhhHHHHHH
Confidence 344555555555555542 23334444444444455566666666666555543 2244455555555555566666666
Q ss_pred HHccCCC---CCeehHHHHHHHHHhCCCHHHHHHHHHhCCCC---ChhHHHHHHHHHhcCCChHHHHHHhcccCC-----
Q 007808 157 VFGEMDE---RNVVVWTSMINGYISCGDIVSARCLFELAPER---DVILWNTIVSGYIDVRNMIEARKLFDQMPK----- 225 (589)
Q Consensus 157 ~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~----- 225 (589)
.|..... .|...|..+.-.-.+.|+++.....-....+. ....|..++.+..-.|+...|..+++...+
T Consensus 97 cy~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~ 176 (700)
T KOG1156|consen 97 CYRNALKIEKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTS 176 (700)
T ss_pred HHHHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Confidence 6665543 34445555554555555555544444333322 334566666666666666666666655542
Q ss_pred CChhhHHHHH------HHHHhcCCHHHHHHHHhhCCCC--C-chhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCcHH
Q 007808 226 KDVISWNTML------SGYANNGDVEECKRLFEEMPER--N-VFSWNGLIGGYANNGLFFEVLDAFKRMLTEGRVFPNDA 296 (589)
Q Consensus 226 ~~~~~~~~l~------~~~~~~~~~~~A~~~~~~~~~~--~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~ 296 (589)
|+...+.... ....+.|..+.|.+.+..-... | ...-..-...+.+.++.++|..++..++... ||..
T Consensus 177 ~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rn---Pdn~ 253 (700)
T KOG1156|consen 177 PSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQIVDKLAFEETKADLLMKLGQLEEAVKVYRRLLERN---PDNL 253 (700)
T ss_pred CCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhHHHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhC---chhH
Confidence 3333332221 3344566666666666555431 1 1222234456677777788888777777754 6665
Q ss_pred HHHHHHHHHH-hcCChhHHH-HHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHH-HHHhhCC-CCCcchHHHHHHHHH
Q 007808 297 TIVTVLSACA-RLGALDFSK-WVHVYAEYNGYQGNVCVGNALIDMYAKCGIIENAV-DVFNSMD-TKDLITWNTIISGLA 372 (589)
Q Consensus 297 ~~~~l~~~~~-~~~~~~~a~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~-~~~~~~~-~~~~~~~~~l~~~~~ 372 (589)
-|...+..+. +..+.-++. .+|....+. ++... .-..+--......++.... +++.... +.-+.++..+...|-
T Consensus 254 ~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~-y~r~e-~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~vf~dl~SLyk 331 (700)
T KOG1156|consen 254 DYYEGLEKALGKIKDMLEALKALYAILSEK-YPRHE-CPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPSVFKDLRSLYK 331 (700)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHhhc-Ccccc-cchhccHHHhCcchhHHHHHHHHHHHhhcCCCchhhhhHHHHh
Confidence 5555444333 233333333 444443332 11110 0011111111112222222 2222222 222334444444443
Q ss_pred hCCChHHHHHHHHHHHH----CC----------CCCCHh--HHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC-hHHH
Q 007808 373 MHGRGAGALSLFHEMKN----AG----------EMPDGI--TFIGILCACTHMGLVEEGLSYFQSMAMDYSIVPQ-IEHY 435 (589)
Q Consensus 373 ~~~~~~~A~~~~~~m~~----~~----------~~p~~~--~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~ 435 (589)
.-...+-..++...+.. .| -+|... ++..++..+-..|+++.|..+++.++ +..|+ +..|
T Consensus 332 ~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AI---dHTPTliEly 408 (700)
T KOG1156|consen 332 DPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAI---DHTPTLIELY 408 (700)
T ss_pred chhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHh---ccCchHHHHH
Confidence 22221111111111111 00 134333 44556777888899999999998887 55566 4566
Q ss_pred HHHHHHHHhcCCHHHHHHHHhhCC--CCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHccCCC------CC-cchHHH--
Q 007808 436 GCMVDLLARAGRLAEAVDFVKRMP--IEADAVIWANLLGSCRVYKNVELAELALERLTELEPK------NP-ANFVML-- 504 (589)
Q Consensus 436 ~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~------~~-~~~~~l-- 504 (589)
..-.+.+...|.+++|..++++.. ..||...-..-..-..+.++.++|.++..+..+.+-+ +. -.|+.+
T Consensus 409 ~~KaRI~kH~G~l~eAa~~l~ea~elD~aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~~~~~~~~L~~mqcmWf~~E~ 488 (700)
T KOG1156|consen 409 LVKARIFKHAGLLDEAAAWLDEAQELDTADRAINSKCAKYMLRANEIEEAEEVLSKFTREGFGAVNNLAEMQCMWFQLED 488 (700)
T ss_pred HHHHHHHHhcCChHHHHHHHHHHHhccchhHHHHHHHHHHHHHccccHHHHHHHHHhhhcccchhhhHHHhhhHHHhHhh
Confidence 666788888999999999998883 2344433223344456778889999988887775432 01 122222
Q ss_pred HHHHhhcCChHHHHHHHHHh
Q 007808 505 SNIYGDLGRWKDVARIKVAM 524 (589)
Q Consensus 505 ~~~~~~~g~~~~A~~~~~~~ 524 (589)
+..|.+.|++..|++-+..+
T Consensus 489 g~ay~r~~k~g~ALKkfh~i 508 (700)
T KOG1156|consen 489 GEAYLRQNKLGLALKKFHEI 508 (700)
T ss_pred hHHHHHHHHHHHHHHHHhhH
Confidence 55688888888777755444
No 84
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.22 E-value=4.1e-08 Score=87.79 Aligned_cols=410 Identities=11% Similarity=0.039 Sum_probs=255.3
Q ss_pred HHHHhccCChHHHHHHHHHHHHhCCCCchHHHhHHHHHHHcCCChHHHHHHHccCCC---CCeehHHHHHHHHHhCCCHH
Q 007808 107 LKSCVKINALREGEELHCLVLKNGFRANIFVGTALIELYSTGKAIEAAYKVFGEMDE---RNVVVWTSMINGYISCGDIV 183 (589)
Q Consensus 107 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~ 183 (589)
+.-+....|+..|+.+++.-...+-+....+-.-+..++.+.|++++|...+..+.+ ++...+-.|.-.+.-.|.+.
T Consensus 29 Ledfls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~ 108 (557)
T KOG3785|consen 29 LEDFLSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYI 108 (557)
T ss_pred HHHHHhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHH
Confidence 344556678888888888776544333233444456778889999999999987765 45567777777788889999
Q ss_pred HHHHHHHhCCCCChhHHHHHHHHHhcCCChHHHHHHhcccCCCChhhHHHHHHHHHhcCCHHHHHHHHhhCCC--CCchh
Q 007808 184 SARCLFELAPERDVILWNTIVSGYIDVRNMIEARKLFDQMPKKDVISWNTMLSGYANNGDVEECKRLFEEMPE--RNVFS 261 (589)
Q Consensus 184 ~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~ 261 (589)
+|..+.....+. +-.-..+.....+.++-++-..+.+.+.+. ..---++.......-.+.+|+++|+++.. |+...
T Consensus 109 eA~~~~~ka~k~-pL~~RLlfhlahklndEk~~~~fh~~LqD~-~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn~ey~a 186 (557)
T KOG3785|consen 109 EAKSIAEKAPKT-PLCIRLLFHLAHKLNDEKRILTFHSSLQDT-LEDQLSLASVHYMRMHYQEAIDVYKRVLQDNPEYIA 186 (557)
T ss_pred HHHHHHhhCCCC-hHHHHHHHHHHHHhCcHHHHHHHHHHHhhh-HHHHHhHHHHHHHHHHHHHHHHHHHHHHhcChhhhh
Confidence 999988876542 222233344445666666655555554432 12233444444555678899999999886 44445
Q ss_pred HHH-HHHHHHhCCChHHHHHHHHHHHHcCCCCCcHH-HHHHHHHHHHhcCChhHHHH--------------HHHHHHHcC
Q 007808 262 WNG-LIGGYANNGLFFEVLDAFKRMLTEGRVFPNDA-TIVTVLSACARLGALDFSKW--------------VHVYAEYNG 325 (589)
Q Consensus 262 ~~~-l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~~~~~~a~~--------------~~~~~~~~~ 325 (589)
.|. +.-+|.+..-++-+.+++.-.+++- ||.. ..+.......+.-+-..|.. ..+.+.+.+
T Consensus 187 lNVy~ALCyyKlDYydvsqevl~vYL~q~---pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~f~~~l~rHN 263 (557)
T KOG3785|consen 187 LNVYMALCYYKLDYYDVSQEVLKVYLRQF---PDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQEYPFIEYLCRHN 263 (557)
T ss_pred hHHHHHHHHHhcchhhhHHHHHHHHHHhC---CCcHHHHHHHHHHHhhhhccchhHHHHHHHHhcccccchhHHHHHHcC
Confidence 554 3446677777788888887777753 5443 33332222222111111111 111222211
Q ss_pred C------C------C-----ChhHHHHHHHHHHhcCChHHHHHHHhhCCCCCcchHHHHHHHHHhCCC-------hHHHH
Q 007808 326 Y------Q------G-----NVCVGNALIDMYAKCGIIENAVDVFNSMDTKDLITWNTIISGLAMHGR-------GAGAL 381 (589)
Q Consensus 326 ~------~------~-----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~-------~~~A~ 381 (589)
. + | -+...-.|+-.|.+++++++|..+.+++....+.-|-.-.-.+...|+ ..-|.
T Consensus 264 LVvFrngEgALqVLP~L~~~IPEARlNL~iYyL~q~dVqeA~~L~Kdl~PttP~EyilKgvv~aalGQe~gSreHlKiAq 343 (557)
T KOG3785|consen 264 LVVFRNGEGALQVLPSLMKHIPEARLNLIIYYLNQNDVQEAISLCKDLDPTTPYEYILKGVVFAALGQETGSREHLKIAQ 343 (557)
T ss_pred eEEEeCCccHHHhchHHHhhChHhhhhheeeecccccHHHHHHHHhhcCCCChHHHHHHHHHHHHhhhhcCcHHHHHHHH
Confidence 1 0 0 112233456678899999999999999886666544433333333332 33456
Q ss_pred HHHHHHHHCCCCCCH-hHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHhhCC-
Q 007808 382 SLFHEMKNAGEMPDG-ITFIGILCACTHMGLVEEGLSYFQSMAMDYSIVPQIEHYGCMVDLLARAGRLAEAVDFVKRMP- 459 (589)
Q Consensus 382 ~~~~~m~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~- 459 (589)
+.|+-.-.++..-|. .--.++..++.-..++++.+-+++.+ +.+-...|...+| +..+++..|++.+|+++|-++.
T Consensus 344 qffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi-~sYF~NdD~Fn~N-~AQAk~atgny~eaEelf~~is~ 421 (557)
T KOG3785|consen 344 QFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSI-ESYFTNDDDFNLN-LAQAKLATGNYVEAEELFIRISG 421 (557)
T ss_pred HHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHH-HHHhcCcchhhhH-HHHHHHHhcChHHHHHHHhhhcC
Confidence 666655455544432 23456666677778899999998888 4434444555554 7899999999999999998884
Q ss_pred -CCCCHHHHHHHH-HHHhcCCCHHHHHHHHHHHHccCCCC-CcchHHHHHHHhhcCChHHHHHHHHHhh
Q 007808 460 -IEADAVIWANLL-GSCRVYKNVELAELALERLTELEPKN-PANFVMLSNIYGDLGRWKDVARIKVAMR 525 (589)
Q Consensus 460 -~~p~~~~~~~l~-~~~~~~g~~~~A~~~~~~~~~~~p~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 525 (589)
.-.|..+|.+++ .+|.+.+.++.|..++-+.- .|.+ ...+..+++.+.+.+.+=-|-+.|+.+.
T Consensus 422 ~~ikn~~~Y~s~LArCyi~nkkP~lAW~~~lk~~--t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE 488 (557)
T KOG3785|consen 422 PEIKNKILYKSMLARCYIRNKKPQLAWDMMLKTN--TPSERFSLLQLIANDCYKANEFYYAAKAFDELE 488 (557)
T ss_pred hhhhhhHHHHHHHHHHHHhcCCchHHHHHHHhcC--CchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Confidence 113556666555 78899999998877654432 2332 3355566788999999888888888875
No 85
>PF13041 PPR_2: PPR repeat family
Probab=99.21 E-value=1.9e-11 Score=79.81 Aligned_cols=50 Identities=28% Similarity=0.589 Sum_probs=34.5
Q ss_pred CCcccHHHHHHHHHcCCChhHHHHHHHHhhhCCCCCCcccHHHHHHHHhc
Q 007808 63 QNVVSWNAMFNGYAQNEFHRTVVVLFTQMKKLDAMPNCFTFPIVLKSCVK 112 (589)
Q Consensus 63 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~ 112 (589)
||+.+||++|.+|++.|++++|.++|++|.+.|++||..||+.++++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 56666777777777777777777777777777777777777777766653
No 86
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.21 E-value=7.7e-09 Score=102.42 Aligned_cols=295 Identities=9% Similarity=0.032 Sum_probs=173.2
Q ss_pred HHhCCChHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhHHHHHHHHHHhc-----
Q 007808 269 YANNGLFFEVLDAFKRMLTEGRVFPNDATIVTVLSACARLGALDFSKWVHVYAEYNGYQGNVCVGNALIDMYAKC----- 343 (589)
Q Consensus 269 ~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----- 343 (589)
+...|++++|++.+..-... +.............+.+.|+.++|..++..+++.+ |.+..-|..+..+..-.
T Consensus 14 l~e~g~~~~AL~~L~~~~~~--I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN-Pdn~~Yy~~L~~~~g~~~~~~~ 90 (517)
T PF12569_consen 14 LEEAGDYEEALEHLEKNEKQ--ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN-PDNYDYYRGLEEALGLQLQLSD 90 (517)
T ss_pred HHHCCCHHHHHHHHHhhhhh--CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHhhhccccc
Confidence 44455555555555443332 22222233334444555555555555555555554 33444444444443211
Q ss_pred CChHHHHHHHhhCCCC--CcchHHHHHHHHHhCCCh-HHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCcHHHHHHHHH
Q 007808 344 GIIENAVDVFNSMDTK--DLITWNTIISGLAMHGRG-AGALSLFHEMKNAGEMPDGITFIGILCACTHMGLVEEGLSYFQ 420 (589)
Q Consensus 344 g~~~~A~~~~~~~~~~--~~~~~~~l~~~~~~~~~~-~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 420 (589)
...+...++|+++... .......+.-.+.....+ ..+...+..+...|+++ +|..|-..|......+-..+++.
T Consensus 91 ~~~~~~~~~y~~l~~~yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPs---lF~~lk~Ly~d~~K~~~i~~l~~ 167 (517)
T PF12569_consen 91 EDVEKLLELYDELAEKYPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPS---LFSNLKPLYKDPEKAAIIESLVE 167 (517)
T ss_pred ccHHHHHHHHHHHHHhCccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCch---HHHHHHHHHcChhHHHHHHHHHH
Confidence 1344445555544321 111111111111111122 24556677778888654 34445455555555555555555
Q ss_pred HhHHhc-------------CCCCChHHH--HHHHHHHHhcCCHHHHHHHHhhC-CCCCC-HHHHHHHHHHHhcCCCHHHH
Q 007808 421 SMAMDY-------------SIVPQIEHY--GCMVDLLARAGRLAEAVDFVKRM-PIEAD-AVIWANLLGSCRVYKNVELA 483 (589)
Q Consensus 421 ~~~~~~-------------~~~~~~~~~--~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~A 483 (589)
...... .-+|....| ..+...|...|++++|+++++++ ...|+ +..|..-...+.+.|++.+|
T Consensus 168 ~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~~~~A 247 (517)
T PF12569_consen 168 EYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGDLKEA 247 (517)
T ss_pred HHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHH
Confidence 543321 112444334 56678899999999999999987 56675 56677777999999999999
Q ss_pred HHHHHHHHccCCCCCcchHHHHHHHhhcCChHHHHHHHHHhhhCCCccCCccceeeeCCeeeeeccccCCCch--HHHHH
Q 007808 484 ELALERLTELEPKNPANFVMLSNIYGDLGRWKDVARIKVAMRDTGFKKLPGCSSIEVNEVVMLGCLSRELDRK--SIVRA 561 (589)
Q Consensus 484 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~--~~~~~ 561 (589)
.+.++.+.++++.|...-.-.+..+.|+|+.++|.+++....+.+..+.. .++ +.. =....
T Consensus 248 a~~~~~Ar~LD~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~----------------~L~-~mQc~Wf~~e 310 (517)
T PF12569_consen 248 AEAMDEARELDLADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLS----------------NLN-DMQCMWFETE 310 (517)
T ss_pred HHHHHHHHhCChhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCccc----------------CHH-HHHHHHHHHH
Confidence 99999999999999999999999999999999999998888654431110 000 011 11244
Q ss_pred HHHHHHHcccCCCCcchHhhhhhcc
Q 007808 562 EANMIKLLPQNNHPLTFIVVIFSTF 586 (589)
Q Consensus 562 l~~~~~~~~~~~~~~~~~~~~~~~~ 586 (589)
.|..|.+.|+.+.|......+..-|
T Consensus 311 ~a~a~~r~~~~~~ALk~~~~v~k~f 335 (517)
T PF12569_consen 311 CAEAYLRQGDYGLALKRFHAVLKHF 335 (517)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 6778888888888777666555444
No 87
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=99.20 E-value=3.5e-07 Score=89.60 Aligned_cols=385 Identities=13% Similarity=0.080 Sum_probs=217.6
Q ss_pred HHHHHhccCChHHHHHHHHHHHHhCCCCchHHHhHHHHHHHcCCChHHHHHHHccCCCCCeehHHHHHHHHHhCCCHHHH
Q 007808 106 VLKSCVKINALREGEELHCLVLKNGFRANIFVGTALIELYSTGKAIEAAYKVFGEMDERNVVVWTSMINGYISCGDIVSA 185 (589)
Q Consensus 106 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 185 (589)
.+.+..+...+.+|..+++.+.... .-.-.|..+.+.|+..|+++.|+++|-+. ..++..|..|.+.|+|++|
T Consensus 738 aieaai~akew~kai~ildniqdqk--~~s~yy~~iadhyan~~dfe~ae~lf~e~-----~~~~dai~my~k~~kw~da 810 (1636)
T KOG3616|consen 738 AIEAAIGAKEWKKAISILDNIQDQK--TASGYYGEIADHYANKGDFEIAEELFTEA-----DLFKDAIDMYGKAGKWEDA 810 (1636)
T ss_pred HHHHHhhhhhhhhhHhHHHHhhhhc--cccccchHHHHHhccchhHHHHHHHHHhc-----chhHHHHHHHhccccHHHH
Confidence 3455567778888998888887654 23446777889999999999999999653 4567778999999999999
Q ss_pred HHHHHhCCCC--ChhHHHHHHHHHhcCCChHHHHHHhcccCCCChhhHHHHHHHHHhcCCHHHHHHHHhhCCC-CCchhH
Q 007808 186 RCLFELAPER--DVILWNTIVSGYIDVRNMIEARKLFDQMPKKDVISWNTMLSGYANNGDVEECKRLFEEMPE-RNVFSW 262 (589)
Q Consensus 186 ~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-~~~~~~ 262 (589)
.++-++...| ....|..-..-+-+.|++.+|.+++-.+..|+. -|.+|-+.|..+..+++.++-.. .-..+.
T Consensus 811 ~kla~e~~~~e~t~~~yiakaedldehgkf~eaeqlyiti~~p~~-----aiqmydk~~~~ddmirlv~k~h~d~l~dt~ 885 (1636)
T KOG3616|consen 811 FKLAEECHGPEATISLYIAKAEDLDEHGKFAEAEQLYITIGEPDK-----AIQMYDKHGLDDDMIRLVEKHHGDHLHDTH 885 (1636)
T ss_pred HHHHHHhcCchhHHHHHHHhHHhHHhhcchhhhhheeEEccCchH-----HHHHHHhhCcchHHHHHHHHhChhhhhHHH
Confidence 9999887766 345666666777888999999999888877764 45778888888888887766543 223445
Q ss_pred HHHHHHHHhCCChHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHhcCChhHHHHHHH--------------HHHHcCCCC
Q 007808 263 NGLIGGYANNGLFFEVLDAFKRMLTEGRVFPNDATIVTVLSACARLGALDFSKWVHV--------------YAEYNGYQG 328 (589)
Q Consensus 263 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~--------------~~~~~~~~~ 328 (589)
..+..-|-..|+...|...|-+.-+ |...++.|..++-|+.|.++-+ .+...|-..
T Consensus 886 ~~f~~e~e~~g~lkaae~~flea~d----------~kaavnmyk~s~lw~dayriaktegg~n~~k~v~flwaksiggda 955 (1636)
T KOG3616|consen 886 KHFAKELEAEGDLKAAEEHFLEAGD----------FKAAVNMYKASELWEDAYRIAKTEGGANAEKHVAFLWAKSIGGDA 955 (1636)
T ss_pred HHHHHHHHhccChhHHHHHHHhhhh----------HHHHHHHhhhhhhHHHHHHHHhccccccHHHHHHHHHHHhhCcHH
Confidence 5566666667777777665544322 2233333444444444433321 111111111
Q ss_pred ChhHH------HHHHHHHHhcCChHHHHHHHhhCC-CCCcchHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHhHHH-
Q 007808 329 NVCVG------NALIDMYAKCGIIENAVDVFNSMD-TKDLITWNTIISGLAMHGRGAGALSLFHEMKNAGEMPDGITFI- 400 (589)
Q Consensus 329 ~~~~~------~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~- 400 (589)
-+... ..-++.-+..+.++-|.++-+-.. .+...+...+..-+-..|++++|-+.+-+.++.+ .-..||.
T Consensus 956 avkllnk~gll~~~id~a~d~~afd~afdlari~~k~k~~~vhlk~a~~ledegk~edaskhyveaikln--tynitwcq 1033 (1636)
T KOG3616|consen 956 AVKLLNKHGLLEAAIDFAADNCAFDFAFDLARIAAKDKMGEVHLKLAMFLEDEGKFEDASKHYVEAIKLN--TYNITWCQ 1033 (1636)
T ss_pred HHHHHHhhhhHHHHhhhhhcccchhhHHHHHHHhhhccCccchhHHhhhhhhccchhhhhHhhHHHhhcc--cccchhhh
Confidence 11111 111222233344444444333222 1222333344445556777777777666655432 1111111
Q ss_pred ------------------HHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHhhCCCCC
Q 007808 401 ------------------GILCACTHMGLVEEGLSYFQSMAMDYSIVPQIEHYGCMVDLLARAGRLAEAVDFVKRMPIEA 462 (589)
Q Consensus 401 ------------------~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p 462 (589)
..+..+.+..+|..|.++-+.-.. ..- +..+..-.+.-...|++.+|..++-+.. +|
T Consensus 1034 avpsrfd~e~ir~gnkpe~av~mfi~dndwa~aervae~h~~--~~l--~dv~tgqar~aiee~d~~kae~fllran-kp 1108 (1636)
T KOG3616|consen 1034 AVPSRFDAEFIRAGNKPEEAVEMFIHDNDWAAAERVAEAHCE--DLL--ADVLTGQARGAIEEGDFLKAEGFLLRAN-KP 1108 (1636)
T ss_pred cccchhhHHHHHcCCChHHHHHHhhhcccHHHHHHHHHhhCh--hhh--HHHHhhhhhccccccchhhhhhheeecC-CC
Confidence 112334445556555555433221 111 2233333444555667777776666664 45
Q ss_pred CHHHHHHHHHHHhcCCCHHHHHHHH----------------HHHHccCCCCCcchHHHHHHHhhcCChHHHHHHHHHh
Q 007808 463 DAVIWANLLGSCRVYKNVELAELAL----------------ERLTELEPKNPANFVMLSNIYGDLGRWKDVARIKVAM 524 (589)
Q Consensus 463 ~~~~~~~l~~~~~~~g~~~~A~~~~----------------~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 524 (589)
+.. ++-|...+-+..|+++. +..++........+..-+.-..++|+|.+|...+-++
T Consensus 1109 ~i~-----l~yf~e~~lw~dalri~kdylp~q~a~iqeeyek~~~k~gargvd~fvaqak~weq~gd~rkav~~~lki 1181 (1636)
T KOG3616|consen 1109 DIA-----LNYFIEAELWPDALRIAKDYLPHQAAAIQEEYEKEALKKGARGVDGFVAQAKEWEQAGDWRKAVDALLKI 1181 (1636)
T ss_pred chH-----HHHHHHhccChHHHHHHHhhChhHHHHHHHHHHHHHHhccccccHHHHHHHHHHHhcccHHHHHHHHhhh
Confidence 442 12223333333333322 2223334444556666677777888888887776665
No 88
>PF13041 PPR_2: PPR repeat family
Probab=99.20 E-value=5.2e-11 Score=77.78 Aligned_cols=50 Identities=38% Similarity=0.575 Sum_probs=44.5
Q ss_pred CCcchHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhc
Q 007808 359 KDLITWNTIISGLAMHGRGAGALSLFHEMKNAGEMPDGITFIGILCACTH 408 (589)
Q Consensus 359 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~ 408 (589)
||+.+||+++.+|++.|++++|.++|++|.+.|+.||..||+.++.+|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 67888999999999999999999999999999999999999999988864
No 89
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=99.18 E-value=1.3e-09 Score=100.55 Aligned_cols=244 Identities=14% Similarity=0.050 Sum_probs=141.2
Q ss_pred HHHHhCCChHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCh
Q 007808 267 GGYANNGLFFEVLDAFKRMLTEGRVFPNDATIVTVLSACARLGALDFSKWVHVYAEYNGYQGNVCVGNALIDMYAKCGII 346 (589)
Q Consensus 267 ~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 346 (589)
+-+.-.|++..++.-.+ ..... -..+......+.+++...|+.+.+. ..+.... +|.......+...+...++-
T Consensus 9 rn~fy~G~Y~~~i~e~~-~~~~~-~~~~~e~~~~~~Rs~iAlg~~~~vl---~ei~~~~-~~~l~av~~la~y~~~~~~~ 82 (290)
T PF04733_consen 9 RNQFYLGNYQQCINEAS-LKSFS-PENKLERDFYQYRSYIALGQYDSVL---SEIKKSS-SPELQAVRLLAEYLSSPSDK 82 (290)
T ss_dssp HHHHCTT-HHHHCHHHH-CHTST-CHHHHHHHHHHHHHHHHTT-HHHHH---HHS-TTS-SCCCHHHHHHHHHHCTSTTH
T ss_pred HHHHHhhhHHHHHHHhh-ccCCC-chhHHHHHHHHHHHHHHcCChhHHH---HHhccCC-ChhHHHHHHHHHHHhCccch
Confidence 34455666666665444 22211 1122333444556666666554332 2222222 44554554444444333445
Q ss_pred HHHHHHHhhCC-CC----CcchHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCcHHHHHHHHHH
Q 007808 347 ENAVDVFNSMD-TK----DLITWNTIISGLAMHGRGAGALSLFHEMKNAGEMPDGITFIGILCACTHMGLVEEGLSYFQS 421 (589)
Q Consensus 347 ~~A~~~~~~~~-~~----~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 421 (589)
+.+..-+++.. .+ +..........+...|++++|++++.+- .+.......+..+.+.++++.|.+.++.
T Consensus 83 e~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~ 156 (290)
T PF04733_consen 83 ESALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKN 156 (290)
T ss_dssp HCHHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 55555554433 22 1222222233455678888888777532 3445556677778888888888888888
Q ss_pred hHHhcCCCCChHHH---HHHHHHHHhcCCHHHHHHHHhhC--CCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHccCCC
Q 007808 422 MAMDYSIVPQIEHY---GCMVDLLARAGRLAEAVDFVKRM--PIEADAVIWANLLGSCRVYKNVELAELALERLTELEPK 496 (589)
Q Consensus 422 ~~~~~~~~~~~~~~---~~l~~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 496 (589)
|. .+..|.... .+.+..+.....+.+|..+|+++ ...+++.+.+.+..+....|++++|++.++++++.+|+
T Consensus 157 ~~---~~~eD~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~ 233 (290)
T PF04733_consen 157 MQ---QIDEDSILTQLAEAWVNLATGGEKYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPN 233 (290)
T ss_dssp HH---CCSCCHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CC
T ss_pred HH---hcCCcHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccC
Confidence 84 333443222 22233333344688888888888 34567777888888888888999999888888888888
Q ss_pred CCcchHHHHHHHhhcCCh-HHHHHHHHHhh
Q 007808 497 NPANFVMLSNIYGDLGRW-KDVARIKVAMR 525 (589)
Q Consensus 497 ~~~~~~~l~~~~~~~g~~-~~A~~~~~~~~ 525 (589)
++.++.+++-+..-.|+. +.+.+++.++.
T Consensus 234 ~~d~LaNliv~~~~~gk~~~~~~~~l~qL~ 263 (290)
T PF04733_consen 234 DPDTLANLIVCSLHLGKPTEAAERYLSQLK 263 (290)
T ss_dssp HHHHHHHHHHHHHHTT-TCHHHHHHHHHCH
T ss_pred CHHHHHHHHHHHHHhCCChhHHHHHHHHHH
Confidence 888888888888888887 66777888876
No 90
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=99.15 E-value=1.3e-09 Score=89.72 Aligned_cols=124 Identities=11% Similarity=-0.012 Sum_probs=105.2
Q ss_pred HHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHhhC-CCCC-CHHHHHHHHHHHhcCCCHHHHHHHHHHHHccC
Q 007808 417 SYFQSMAMDYSIVPQIEHYGCMVDLLARAGRLAEAVDFVKRM-PIEA-DAVIWANLLGSCRVYKNVELAELALERLTELE 494 (589)
Q Consensus 417 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 494 (589)
.++++.+ .+.|+ .+..+...+...|++++|...|+.+ ...| +...|..+..++...|++++|...|+++++++
T Consensus 14 ~~~~~al---~~~p~--~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~ 88 (144)
T PRK15359 14 DILKQLL---SVDPE--TVYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLD 88 (144)
T ss_pred HHHHHHH---HcCHH--HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 3445554 23344 3556788889999999999999987 4455 67788888899999999999999999999999
Q ss_pred CCCCcchHHHHHHHhhcCChHHHHHHHHHhhhCCCccCCccceeeeCCeeeeeccccCCCchHHHHHHHHHHHHc
Q 007808 495 PKNPANFVMLSNIYGDLGRWKDVARIKVAMRDTGFKKLPGCSSIEVNEVVMLGCLSRELDRKSIVRAEANMIKLL 569 (589)
Q Consensus 495 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 569 (589)
|+++.++..++.++.+.|++++|++.+++.. ++.|+++.++.+.+++...+
T Consensus 89 p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al------------------------~~~p~~~~~~~~~~~~~~~l 139 (144)
T PRK15359 89 ASHPEPVYQTGVCLKMMGEPGLAREAFQTAI------------------------KMSYADASWSEIRQNAQIMV 139 (144)
T ss_pred CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHH------------------------HhCCCChHHHHHHHHHHHHH
Confidence 9999999999999999999999999999986 78999999999999887544
No 91
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=99.14 E-value=4.1e-07 Score=89.14 Aligned_cols=258 Identities=13% Similarity=0.124 Sum_probs=150.1
Q ss_pred HHHHHhcCCHHHHHHHHhhCCCCCch--hHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHhcCChh
Q 007808 235 LSGYANNGDVEECKRLFEEMPERNVF--SWNGLIGGYANNGLFFEVLDAFKRMLTEGRVFPNDATIVTVLSACARLGALD 312 (589)
Q Consensus 235 ~~~~~~~~~~~~A~~~~~~~~~~~~~--~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~ 312 (589)
+.+......|.+|+.+++.+...++. -|..+...|...|+++.|.++|-+.- .++..+..|.+.|+|+
T Consensus 739 ieaai~akew~kai~ildniqdqk~~s~yy~~iadhyan~~dfe~ae~lf~e~~----------~~~dai~my~k~~kw~ 808 (1636)
T KOG3616|consen 739 IEAAIGAKEWKKAISILDNIQDQKTASGYYGEIADHYANKGDFEIAEELFTEAD----------LFKDAIDMYGKAGKWE 808 (1636)
T ss_pred HHHHhhhhhhhhhHhHHHHhhhhccccccchHHHHHhccchhHHHHHHHHHhcc----------hhHHHHHHHhccccHH
Confidence 34445566777777777776654433 35566677777777777777775531 1334566677777777
Q ss_pred HHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHhhCCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHHCCC
Q 007808 313 FSKWVHVYAEYNGYQGNVCVGNALIDMYAKCGIIENAVDVFNSMDTKDLITWNTIISGLAMHGRGAGALSLFHEMKNAGE 392 (589)
Q Consensus 313 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~ 392 (589)
.|.++-.+.. |.......|-+-..-+-+.|++.+|.++|-.+..|+. .|..|-+.|..+..+.+..+-.-
T Consensus 809 da~kla~e~~--~~e~t~~~yiakaedldehgkf~eaeqlyiti~~p~~-----aiqmydk~~~~ddmirlv~k~h~--- 878 (1636)
T KOG3616|consen 809 DAFKLAEECH--GPEATISLYIAKAEDLDEHGKFAEAEQLYITIGEPDK-----AIQMYDKHGLDDDMIRLVEKHHG--- 878 (1636)
T ss_pred HHHHHHHHhc--CchhHHHHHHHhHHhHHhhcchhhhhheeEEccCchH-----HHHHHHhhCcchHHHHHHHHhCh---
Confidence 7766544432 3333445555555556677777777777777766654 35667777777776666554321
Q ss_pred CCCHhHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCCH-----HHH
Q 007808 393 MPDGITFIGILCACTHMGLVEEGLSYFQSMAMDYSIVPQIEHYGCMVDLLARAGRLAEAVDFVKRMPIEADA-----VIW 467 (589)
Q Consensus 393 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~-----~~~ 467 (589)
..-..|...+..-+...|++..|..-|-+.- -|.+-++.|...+.|++|.++-+.-+- .+. ..|
T Consensus 879 d~l~dt~~~f~~e~e~~g~lkaae~~flea~----------d~kaavnmyk~s~lw~dayriaktegg-~n~~k~v~flw 947 (1636)
T KOG3616|consen 879 DHLHDTHKHFAKELEAEGDLKAAEEHFLEAG----------DFKAAVNMYKASELWEDAYRIAKTEGG-ANAEKHVAFLW 947 (1636)
T ss_pred hhhhHHHHHHHHHHHhccChhHHHHHHHhhh----------hHHHHHHHhhhhhhHHHHHHHHhcccc-ccHHHHHHHHH
Confidence 1123455666677777788888877665552 145556777777777777777665420 111 111
Q ss_pred H------HHHHHHhcCCCHHHHHH-------------HHHHHHccCCCCCcchHHHHHHHhhcCChHHHHHHHHHhh
Q 007808 468 A------NLLGSCRVYKNVELAEL-------------ALERLTELEPKNPANFVMLSNIYGDLGRWKDVARIKVAMR 525 (589)
Q Consensus 468 ~------~l~~~~~~~g~~~~A~~-------------~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 525 (589)
. ..+..+-+.|-.+.|+. +-+.+.+ ..-+..+..++..+...|++++|-+.|-+..
T Consensus 948 aksiggdaavkllnk~gll~~~id~a~d~~afd~afdlari~~k--~k~~~vhlk~a~~ledegk~edaskhyveai 1022 (1636)
T KOG3616|consen 948 AKSIGGDAAVKLLNKHGLLEAAIDFAADNCAFDFAFDLARIAAK--DKMGEVHLKLAMFLEDEGKFEDASKHYVEAI 1022 (1636)
T ss_pred HHhhCcHHHHHHHHhhhhHHHHhhhhhcccchhhHHHHHHHhhh--ccCccchhHHhhhhhhccchhhhhHhhHHHh
Confidence 1 11122233343333333 2222221 2225567777777888888888877766653
No 92
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=99.13 E-value=1.3e-07 Score=95.83 Aligned_cols=500 Identities=11% Similarity=-0.002 Sum_probs=263.6
Q ss_pred HHHHHHHHhCCCCCc-cchHHHHHHHHccCChhHHHHHhhcCCC---CCcccHHHHHHHHHcCCChhHHHHHHHHhhhCC
Q 007808 20 QIQTQVVTSGLEKSD-YITPRIITACAQLKQMTYARKMFDKITD---QNVVSWNAMFNGYAQNEFHRTVVVLFTQMKKLD 95 (589)
Q Consensus 20 ~~~~~~~~~g~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~ 95 (589)
.++..++.....++. ..|..|...|....+...|...|+...+ .+..++......|++..+++.|..+.-...+..
T Consensus 477 al~ali~alrld~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~~~qka 556 (1238)
T KOG1127|consen 477 ALHALIRALRLDVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLRAAQKA 556 (1238)
T ss_pred HHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHHHhhhc
Confidence 333344444444443 5778888888888888999999988766 455678889999999999999998843332221
Q ss_pred -CCCCcccHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchHHHhHHHHHHHcCCChHHHHHHHccCCCCCeehHH---H
Q 007808 96 -AMPNCFTFPIVLKSCVKINALREGEELHCLVLKNGFRANIFVGTALIELYSTGKAIEAAYKVFGEMDERNVVVWT---S 171 (589)
Q Consensus 96 -~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~---~ 171 (589)
...-...|....-.+...++...+..-|+..++.. +.|...|..++.+|.++|.+..|.++|.+...-++..+- -
T Consensus 557 ~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~d-PkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y~~fk 635 (1238)
T KOG1127|consen 557 PAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTD-PKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSKYGRFK 635 (1238)
T ss_pred hHHHHHhhhhhccccccCccchhhHHHHHHHHhcCC-chhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhHHHHHH
Confidence 00111223334444567788888999899888865 457789999999999999999999999888764443322 2
Q ss_pred HHHHHHhCCCHHHHHHHHHhCCCC----------ChhHHHHHHHHHhcCCChHHHHHHhcccCC-----------CChhh
Q 007808 172 MINGYISCGDIVSARCLFELAPER----------DVILWNTIVSGYIDVRNMIEARKLFDQMPK-----------KDVIS 230 (589)
Q Consensus 172 l~~~~~~~g~~~~a~~~~~~~~~~----------~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-----------~~~~~ 230 (589)
.....+..|.+.+|+..+..+... -..++-.+...+...|-..++...++...+ .+...
T Consensus 636 ~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~~~~~~~~ 715 (1238)
T KOG1127|consen 636 EAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHSLQSDRLQ 715 (1238)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhhhHHH
Confidence 233445678888887777655311 111222222222222322222222222110 11111
Q ss_pred HHH-------------------HHHHHHh----cCCH---H---HHHHHHhhCCC--CCchhHHHHHHHHHh----C---
Q 007808 231 WNT-------------------MLSGYAN----NGDV---E---ECKRLFEEMPE--RNVFSWNGLIGGYAN----N--- 272 (589)
Q Consensus 231 ~~~-------------------l~~~~~~----~~~~---~---~A~~~~~~~~~--~~~~~~~~l~~~~~~----~--- 272 (589)
|.. ++..+.+ .+.. | -+.+.+-.-.+ .+..+|..|+..|.+ .
T Consensus 716 Wi~asdac~~f~q~e~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hlsl~~~~~~WyNLGinylr~f~~l~et 795 (1238)
T KOG1127|consen 716 WIVASDACYIFSQEEPSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLSLAIHMYPWYNLGINYLRYFLLLGET 795 (1238)
T ss_pred HHHHhHHHHHHHHhcccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHHHhhccchHHHHhHHHHHHHHHcCCc
Confidence 111 1111111 1110 0 00000000000 122334444433332 1
Q ss_pred -CChHHHHHHHHHHHHcCCCCCcHHHHHH---------------------------------HHHHHHhcCChhHHHHHH
Q 007808 273 -GLFFEVLDAFKRMLTEGRVFPNDATIVT---------------------------------VLSACARLGALDFSKWVH 318 (589)
Q Consensus 273 -g~~~~A~~~~~~~~~~~~~~p~~~~~~~---------------------------------l~~~~~~~~~~~~a~~~~ 318 (589)
.+...|+.-+.+.++.. .-+..+|+. +.-.+....+++.|...+
T Consensus 796 ~~~~~~Ai~c~KkaV~L~--ann~~~WnaLGVlsg~gnva~aQHCfIks~~sep~~~~~W~NlgvL~l~n~d~E~A~~af 873 (1238)
T KOG1127|consen 796 MKDACTAIRCCKKAVSLC--ANNEGLWNALGVLSGIGNVACAQHCFIKSRFSEPTCHCQWLNLGVLVLENQDFEHAEPAF 873 (1238)
T ss_pred chhHHHHHHHHHHHHHHh--hccHHHHHHHHHhhccchhhhhhhhhhhhhhccccchhheeccceeEEecccHHHhhHHH
Confidence 12234555555555432 122223332 222233344555555555
Q ss_pred HHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHhhC-----C---CCCcchHHHHHHHHHhCCChHHHHHHHHH----
Q 007808 319 VYAEYNGYQGNVCVGNALIDMYAKCGIIENAVDVFNSM-----D---TKDLITWNTIISGLAMHGRGAGALSLFHE---- 386 (589)
Q Consensus 319 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-----~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~---- 386 (589)
....... |.+...+-.........|+.-++..+|..- . .++..-|.........+|+.++-+...++
T Consensus 874 ~~~qSLd-P~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te~h~~Ng~~e~~I~t~~ki~sA 952 (1238)
T KOG1127|consen 874 SSVQSLD-PLNLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCATEIHLQNGNIEESINTARKISSA 952 (1238)
T ss_pred HhhhhcC-chhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHHHHHHhccchHHHHHHhhhhhhh
Confidence 5554433 223333333333334455555555555431 1 12223333333334455555443332222
Q ss_pred ------HHHCCCCCCHhHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHH----HHHHHHHhcCCHHHHHHHHh
Q 007808 387 ------MKNAGEMPDGITFIGILCACTHMGLVEEGLSYFQSMAMDYSIVPQIEHYG----CMVDLLARAGRLAEAVDFVK 456 (589)
Q Consensus 387 ------m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~----~l~~~~~~~g~~~~A~~~~~ 456 (589)
... |.+.+.+.|...+....+.+.+..|.....+.+.-...+-+...|+ .+...++..|.++.|...+.
T Consensus 953 s~al~~yf~-~~p~~~fAy~~~gstlEhL~ey~~a~ela~RliglLe~k~d~sqynvak~~~gRL~lslgefe~A~~a~~ 1031 (1238)
T KOG1127|consen 953 SLALSYYFL-GHPQLCFAYAANGSTLEHLEEYRAALELATRLIGLLELKLDESQYNVAKPDAGRLELSLGEFESAKKASW 1031 (1238)
T ss_pred HHHHHHHHh-cCcchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhhcchhhHhhhhc
Confidence 222 2333456677666667777777777776665543212223444444 34566777888888877766
Q ss_pred hCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHccCCCCCc---chHHHHHHHhhcCChHHHHHHHHHhh
Q 007808 457 RMPIEADAVIWANLLGSCRVYKNVELAELALERLTELEPKNPA---NFVMLSNIYGDLGRWKDVARIKVAMR 525 (589)
Q Consensus 457 ~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~---~~~~l~~~~~~~g~~~~A~~~~~~~~ 525 (589)
......+......-+.. .-.++++++.+.|++++.+...+.. ....++.+....+..+.|...+-+..
T Consensus 1032 ~~~~evdEdi~gt~l~l-Ffkndf~~sl~~fe~aLsis~se~d~vvLl~kva~~~g~~~~k~~A~~lLfe~~ 1102 (1238)
T KOG1127|consen 1032 KEWMEVDEDIRGTDLTL-FFKNDFFSSLEFFEQALSISNSESDKVVLLCKVAVCMGLARQKNDAQFLLFEVK 1102 (1238)
T ss_pred ccchhHHHHHhhhhHHH-HHHhHHHHHHHHHHHHhhhcccccchhhhhHHHHHHHhhcccchHHHHHHHHHH
Confidence 55433333332222222 3467999999999999986654333 45556666777888888888765553
No 93
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.12 E-value=1.2e-07 Score=89.84 Aligned_cols=432 Identities=14% Similarity=0.078 Sum_probs=230.0
Q ss_pred HHHHHccCChhHHHHHhhcCCC---CCcccHHHHHHHHHcCCChhHHHHHHHHhhhCCCCCCc-ccHHHHHHHHhccCCh
Q 007808 41 ITACAQLKQMTYARKMFDKITD---QNVVSWNAMFNGYAQNEFHRTVVVLFTQMKKLDAMPNC-FTFPIVLKSCVKINAL 116 (589)
Q Consensus 41 ~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~-~~~~~ll~~~~~~~~~ 116 (589)
.++....|+++.|...|.+... +|...|+.-..+|+..|++++|++=-.+-++. .|+. ..|.....++.-.|++
T Consensus 9 gnaa~s~~d~~~ai~~~t~ai~l~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l--~p~w~kgy~r~Gaa~~~lg~~ 86 (539)
T KOG0548|consen 9 GNAAFSSGDFETAIRLFTEAIMLSPTNHVLYSNRSAAYASLGSYEKALKDATKTRRL--NPDWAKGYSRKGAALFGLGDY 86 (539)
T ss_pred HHhhcccccHHHHHHHHHHHHccCCCccchhcchHHHHHHHhhHHHHHHHHHHHHhc--CCchhhHHHHhHHHHHhcccH
Confidence 3455678899999999987654 56777888888899999999888766665543 4664 4788888888888999
Q ss_pred HHHHHHHHHHHHhCCCCchHHHhHHHHHHHcCCChHHHHHHHccCCCCCeehHHHH-----HHHHHhCCCHHHHHHHHHh
Q 007808 117 REGEELHCLVLKNGFRANIFVGTALIELYSTGKAIEAAYKVFGEMDERNVVVWTSM-----INGYISCGDIVSARCLFEL 191 (589)
Q Consensus 117 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l-----~~~~~~~g~~~~a~~~~~~ 191 (589)
++|...|.+-++.. +.+...++.|..++. -+.. +-+.| .++..|..+ -+.+.....+..-++.++.
T Consensus 87 ~eA~~ay~~GL~~d-~~n~~L~~gl~~a~~--~~~~-~~~~~-----~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~ 157 (539)
T KOG0548|consen 87 EEAILAYSEGLEKD-PSNKQLKTGLAQAYL--EDYA-ADQLF-----TKPYFHEKLANLPLTNYSLSDPAYVKILEIIQK 157 (539)
T ss_pred HHHHHHHHHHhhcC-CchHHHHHhHHHhhh--HHHH-hhhhc-----cCcHHHHHhhcChhhhhhhccHHHHHHHHHhhc
Confidence 99999999888864 445667777777761 1111 11111 111111111 1122222222222222221
Q ss_pred CCCC------ChhHHHHHHHHHhcCCCh-HHHHH--Hh-------cccCC--C-------------ChhhHHHHHHHHHh
Q 007808 192 APER------DVILWNTIVSGYIDVRNM-IEARK--LF-------DQMPK--K-------------DVISWNTMLSGYAN 240 (589)
Q Consensus 192 ~~~~------~~~~~~~l~~~~~~~g~~-~~a~~--~~-------~~~~~--~-------------~~~~~~~l~~~~~~ 240 (589)
.+.. |.....++.. +...+.. ..+.. .. ..... | -..-...+.+...+
T Consensus 158 ~p~~l~~~l~d~r~m~a~~~-l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaayk 236 (539)
T KOG0548|consen 158 NPTSLKLYLNDPRLMKADGQ-LKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYK 236 (539)
T ss_pred CcHhhhcccccHHHHHHHHH-HhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHH
Confidence 1100 1111000000 0000000 00000 00 00000 0 01112334444444
Q ss_pred cCCHHHHHHHHhhCCCC--CchhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHhcCChhHHHHHH
Q 007808 241 NGDVEECKRLFEEMPER--NVFSWNGLIGGYANNGLFFEVLDAFKRMLTEGRVFPNDATIVTVLSACARLGALDFSKWVH 318 (589)
Q Consensus 241 ~~~~~~A~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~ 318 (589)
..+++.|.+.+....+- ++.-++....+|...|.+.+.+......++.| .-...-|+.+..
T Consensus 237 kk~f~~a~q~y~~a~el~~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~g--re~rad~klIak--------------- 299 (539)
T KOG0548|consen 237 KKDFETAIQHYAKALELATDITYLNNIAAVYLERGKYAECIELCEKAVEVG--RELRADYKLIAK--------------- 299 (539)
T ss_pred hhhHHHHHHHHHHHHhHhhhhHHHHHHHHHHHhccHHHHhhcchHHHHHHh--HHHHHHHHHHHH---------------
Confidence 44555555554444431 22223334444555555554444444444433 011111111111
Q ss_pred HHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHhhCCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHh-
Q 007808 319 VYAEYNGYQGNVCVGNALIDMYAKCGIIENAVDVFNSMDTKDLITWNTIISGLAMHGRGAGALSLFHEMKNAGEMPDGI- 397 (589)
Q Consensus 319 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~- 397 (589)
.+..+..+|.+.++++.|+..|.+...+... -....+....++++.......- +.|...
T Consensus 300 -------------~~~r~g~a~~k~~~~~~ai~~~~kaLte~Rt-----~~~ls~lk~~Ek~~k~~e~~a~--~~pe~A~ 359 (539)
T KOG0548|consen 300 -------------ALARLGNAYTKREDYEGAIKYYQKALTEHRT-----PDLLSKLKEAEKALKEAERKAY--INPEKAE 359 (539)
T ss_pred -------------HHHHhhhhhhhHHhHHHHHHHHHHHhhhhcC-----HHHHHHHHHHHHHHHHHHHHHh--hChhHHH
Confidence 1112334555566777777777764421110 1122233445555555554443 334321
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHhhC-CCCCC-HHHHHHHHHHHh
Q 007808 398 TFIGILCACTHMGLVEEGLSYFQSMAMDYSIVPQIEHYGCMVDLLARAGRLAEAVDFVKRM-PIEAD-AVIWANLLGSCR 475 (589)
Q Consensus 398 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~ 475 (589)
-...-...+.+.|++..|+..|.+++.. .+-|...|....-+|.+.|.+..|++-.+.. ...|+ ...|..-..++.
T Consensus 360 e~r~kGne~Fk~gdy~~Av~~YteAIkr--~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~ 437 (539)
T KOG0548|consen 360 EEREKGNEAFKKGDYPEAVKHYTEAIKR--DPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALR 437 (539)
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhc--CCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHH
Confidence 1222255667788899999888888763 2456778888888888999888888776665 34453 344555556667
Q ss_pred cCCCHHHHHHHHHHHHccCCCCCcchHHHHHHHhhcCChHHHHHHHHH
Q 007808 476 VYKNVELAELALERLTELEPKNPANFVMLSNIYGDLGRWKDVARIKVA 523 (589)
Q Consensus 476 ~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 523 (589)
...++++|.+.|+++++.+|.+.++...+.+++......+...++.++
T Consensus 438 ~mk~ydkAleay~eale~dp~~~e~~~~~~rc~~a~~~~~~~ee~~~r 485 (539)
T KOG0548|consen 438 AMKEYDKALEAYQEALELDPSNAEAIDGYRRCVEAQRGDETPEETKRR 485 (539)
T ss_pred HHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHhhcCCCHHHHHHh
Confidence 778899999999999999999888888888887764444444555444
No 94
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.08 E-value=8.5e-08 Score=85.49 Aligned_cols=207 Identities=12% Similarity=0.052 Sum_probs=106.9
Q ss_pred HHHHHhCCChHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCC
Q 007808 266 IGGYANNGLFFEVLDAFKRMLTEGRVFPNDATIVTVLSACARLGALDFSKWVHVYAEYNGYQGNVCVGNALIDMYAKCGI 345 (589)
Q Consensus 266 ~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 345 (589)
+..+...|+...|+.....+++.. +.|...+..-..+|...|++..|+.-++...+.. ..+...+-.+...+...|+
T Consensus 162 l~s~~~~GD~~~ai~~i~~llEi~--~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs-~DnTe~~ykis~L~Y~vgd 238 (504)
T KOG0624|consen 162 LKSASGSGDCQNAIEMITHLLEIQ--PWDASLRQARAKCYIAEGEPKKAIHDLKQASKLS-QDNTEGHYKISQLLYTVGD 238 (504)
T ss_pred HHHHhcCCchhhHHHHHHHHHhcC--cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHhhhh
Confidence 344556677777777777776643 3455555555666666666666666555555543 2233444445555555666
Q ss_pred hHHHHHHHhhCCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHhHHHHH--HHHHhccCcHHHHHHHHHHhH
Q 007808 346 IENAVDVFNSMDTKDLITWNTIISGLAMHGRGAGALSLFHEMKNAGEMPDGITFIGI--LCACTHMGLVEEGLSYFQSMA 423 (589)
Q Consensus 346 ~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l--~~~~~~~g~~~~A~~~~~~~~ 423 (589)
.+.++...++..+-|+.. ..+.-.|+++.+- ..+| +......++|.++.+..+...
T Consensus 239 ~~~sL~~iRECLKldpdH--------------K~Cf~~YKklkKv--------~K~les~e~~ie~~~~t~cle~ge~vl 296 (504)
T KOG0624|consen 239 AENSLKEIRECLKLDPDH--------------KLCFPFYKKLKKV--------VKSLESAEQAIEEKHWTECLEAGEKVL 296 (504)
T ss_pred HHHHHHHHHHHHccCcch--------------hhHHHHHHHHHHH--------HHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 666655555544322211 1111111111110 0000 011223455555555555554
Q ss_pred HhcCCCCC-----hHHHHHHHHHHHhcCCHHHHHHHHhhC-CCCCC-HHHHHHHHHHHhcCCCHHHHHHHHHHHHccCCC
Q 007808 424 MDYSIVPQ-----IEHYGCMVDLLARAGRLAEAVDFVKRM-PIEAD-AVIWANLLGSCRVYKNVELAELALERLTELEPK 496 (589)
Q Consensus 424 ~~~~~~~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 496 (589)
+. .|. ...+..+-.++...|++.+|++.-.++ .+.|+ ..++.--..+|.-...++.|+.-|+++.+.+|+
T Consensus 297 k~---ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n~s 373 (504)
T KOG0624|consen 297 KN---EPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDIDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELNES 373 (504)
T ss_pred hc---CCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCcc
Confidence 32 233 112223344555666777777666655 44554 555555556666666777777777777777776
Q ss_pred CCcc
Q 007808 497 NPAN 500 (589)
Q Consensus 497 ~~~~ 500 (589)
|..+
T Consensus 374 n~~~ 377 (504)
T KOG0624|consen 374 NTRA 377 (504)
T ss_pred cHHH
Confidence 5543
No 95
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.08 E-value=3e-06 Score=86.18 Aligned_cols=464 Identities=15% Similarity=0.158 Sum_probs=275.6
Q ss_pred cchHHHHHHHHccCChhHHHHHhhcCCC-CCcccHHHH-----HHHHHcCCChhHHHHHHHHhhhCCCCCCcccHHHHHH
Q 007808 35 YITPRIITACAQLKQMTYARKMFDKITD-QNVVSWNAM-----FNGYAQNEFHRTVVVLFTQMKKLDAMPNCFTFPIVLK 108 (589)
Q Consensus 35 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~-~~~~~~~~l-----l~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~ 108 (589)
.-+..+.+.|.+.|-...|++.+..+.. ........+ +-.|.-.-.++++.+.++.|...++..|..+...+..
T Consensus 607 yDra~IAqLCEKAGL~qraLehytDl~DIKR~vVhth~L~pEwLv~yFg~lsve~s~eclkaml~~NirqNlQi~VQvat 686 (1666)
T KOG0985|consen 607 YDRAEIAQLCEKAGLLQRALEHYTDLYDIKRVVVHTHLLNPEWLVNYFGSLSVEDSLECLKAMLSANIRQNLQIVVQVAT 686 (1666)
T ss_pred ccHHHHHHHHHhcchHHHHHHhcccHHHHHHHHHHhccCCHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 3366788889999999999988887654 111111111 2234444578889999999998888888777777776
Q ss_pred HHhccCChHHHHHHHHHHHHh-----------CCCCchHHHhHHHHHHHcCCChHHHHHHHccCCC--------------
Q 007808 109 SCVKINALREGEELHCLVLKN-----------GFRANIFVGTALIELYSTGKAIEAAYKVFGEMDE-------------- 163 (589)
Q Consensus 109 ~~~~~~~~~~a~~~~~~~~~~-----------~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-------------- 163 (589)
-|...=..+...++|+....- ++..|+.+.--.|.+.++.|++.+.+++.++-.-
T Consensus 687 ky~eqlg~~~li~lFE~fks~eGL~yfLgSivn~seDpevh~KYIqAA~kt~QikEvERicresn~YdpErvKNfLkeAk 766 (1666)
T KOG0985|consen 687 KYHEQLGAQALIELFESFKSYEGLYYFLGSIVNFSEDPEVHFKYIQAACKTGQIKEVERICRESNCYDPERVKNFLKEAK 766 (1666)
T ss_pred HHHHHhCHHHHHHHHHhhccchhHHHHHHHHhccccCchHHHHHHHHHHhhccHHHHHHHHhccccCCHHHHHHHHHhcc
Confidence 666655566677777765431 3456677777788999999999998888775431
Q ss_pred -----C------------CeehH------HHHHHHHHhCCCHH-------------------------------------
Q 007808 164 -----R------------NVVVW------TSMINGYISCGDIV------------------------------------- 183 (589)
Q Consensus 164 -----~------------~~~~~------~~l~~~~~~~g~~~------------------------------------- 183 (589)
| |.+.| ...|..|++.=++.
T Consensus 767 L~DqlPLiiVCDRf~fVhdlvlYLyrnn~~kyIE~yVQkvNps~~p~VvG~LLD~dC~E~~ik~Li~~v~gq~~~deLv~ 846 (1666)
T KOG0985|consen 767 LTDQLPLIIVCDRFDFVHDLVLYLYRNNLQKYIEIYVQKVNPSRTPQVVGALLDVDCSEDFIKNLILSVRGQFPVDELVE 846 (1666)
T ss_pred ccccCceEEEecccccHHHHHHHHHHhhHHHHHHHHHhhcCCcccchhhhhhhcCCCcHHHHHHHHHHHhccCChHHHHH
Confidence 1 11111 12233333322111
Q ss_pred ---------HHHHHHHhCC---CCChhHHHHHHHHHhcCCChHH-HHH---Hhccc--------CCC-------------
Q 007808 184 ---------SARCLFELAP---ERDVILWNTIVSGYIDVRNMIE-ARK---LFDQM--------PKK------------- 226 (589)
Q Consensus 184 ---------~a~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~-a~~---~~~~~--------~~~------------- 226 (589)
--..+++... ..|..+++++...|...++-.+ -.+ .++.. .+|
T Consensus 847 EvEkRNRLklLlp~LE~~i~eG~~d~a~hnAlaKIyIDSNNnPE~fLkeN~yYDs~vVGkYCEKRDP~lA~vaYerGqcD 926 (1666)
T KOG0985|consen 847 EVEKRNRLKLLLPWLESLIQEGSQDPATHNALAKIYIDSNNNPERFLKENPYYDSKVVGKYCEKRDPHLACVAYERGQCD 926 (1666)
T ss_pred HHHhhhhHHHHHHHHHHHHhccCcchHHHhhhhheeecCCCChHHhcccCCcchhhHHhhhhcccCCceEEEeecccCCc
Confidence 1111111111 1267788888877776543222 111 00000 000
Q ss_pred --------ChhhHHHHHHHHHhcCCHHHHHHHHhhC-----------CC------CCchhHHHHHHHHHhCCChHHHHHH
Q 007808 227 --------DVISWNTMLSGYANNGDVEECKRLFEEM-----------PE------RNVFSWNGLIGGYANNGLFFEVLDA 281 (589)
Q Consensus 227 --------~~~~~~~l~~~~~~~~~~~~A~~~~~~~-----------~~------~~~~~~~~l~~~~~~~g~~~~A~~~ 281 (589)
....|....+.+.+..+.+-=.+++.+- .+ .|+..-..-+.++...+-..+-+++
T Consensus 927 ~elI~vcNeNSlfK~~aRYlv~R~D~~LW~~VL~e~n~~rRqLiDqVv~tal~E~~dPe~vS~tVkAfMtadLp~eLIEL 1006 (1666)
T KOG0985|consen 927 LELINVCNENSLFKSQARYLVERSDPDLWAKVLNEENPYRRQLIDQVVQTALPETQDPEEVSVTVKAFMTADLPNELIEL 1006 (1666)
T ss_pred HHHHHhcCchhHHHHHHHHHHhccChHHHHHHHhccChHHHHHHHHHHHhcCCccCChHHHHHHHHHHHhcCCcHHHHHH
Confidence 1112233333344444433322332111 10 3444555667778888888888888
Q ss_pred HHHHHHcCCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCC-----------------------CCChhHHHHHHH
Q 007808 282 FKRMLTEGRVFPNDATIVTVLSACARLGALDFSKWVHVYAEYNGY-----------------------QGNVCVGNALID 338 (589)
Q Consensus 282 ~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-----------------------~~~~~~~~~l~~ 338 (589)
+++++-.+........+..++-.-+-..+...+.++..++-..+. ..+....+.|+.
T Consensus 1007 LEKIvL~~S~Fse~~nLQnLLiLtAikad~trVm~YI~rLdnyDa~~ia~iai~~~LyEEAF~ifkkf~~n~~A~~VLie 1086 (1666)
T KOG0985|consen 1007 LEKIVLDNSVFSENRNLQNLLILTAIKADRTRVMEYINRLDNYDAPDIAEIAIENQLYEEAFAIFKKFDMNVSAIQVLIE 1086 (1666)
T ss_pred HHHHhcCCcccccchhhhhhHHHHHhhcChHHHHHHHHHhccCCchhHHHHHhhhhHHHHHHHHHHHhcccHHHHHHHHH
Confidence 888765431111112222222211222233333333333322211 112222222221
Q ss_pred HHHhcCChHHHHHHHhhCCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCcHHHHHHH
Q 007808 339 MYAKCGIIENAVDVFNSMDTKDLITWNTIISGLAMHGRGAGALSLFHEMKNAGEMPDGITFIGILCACTHMGLVEEGLSY 418 (589)
Q Consensus 339 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~ 418 (589)
.-+.++.|.+.-++.. .+..|..+..+-.+.|...+|++-|-+ ..|+..|..++..+.+.|.|++-.++
T Consensus 1087 ---~i~~ldRA~efAe~~n--~p~vWsqlakAQL~~~~v~dAieSyik------adDps~y~eVi~~a~~~~~~edLv~y 1155 (1666)
T KOG0985|consen 1087 ---NIGSLDRAYEFAERCN--EPAVWSQLAKAQLQGGLVKDAIESYIK------ADDPSNYLEVIDVASRTGKYEDLVKY 1155 (1666)
T ss_pred ---HhhhHHHHHHHHHhhC--ChHHHHHHHHHHHhcCchHHHHHHHHh------cCCcHHHHHHHHHHHhcCcHHHHHHH
Confidence 1233444444433333 345799999999999999999887743 23567799999999999999999999
Q ss_pred HHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHccCCCCC
Q 007808 419 FQSMAMDYSIVPQIEHYGCMVDLLARAGRLAEAVDFVKRMPIEADAVIWANLLGSCRVYKNVELAELALERLTELEPKNP 498 (589)
Q Consensus 419 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~ 498 (589)
+..++++ .-+|... ..|+.+|.+.++..+-++++. -|+......+..-|...|.++.|.-+|.. .
T Consensus 1156 L~MaRkk-~~E~~id--~eLi~AyAkt~rl~elE~fi~----gpN~A~i~~vGdrcf~~~~y~aAkl~y~~--------v 1220 (1666)
T KOG0985|consen 1156 LLMARKK-VREPYID--SELIFAYAKTNRLTELEEFIA----GPNVANIQQVGDRCFEEKMYEAAKLLYSN--------V 1220 (1666)
T ss_pred HHHHHHh-hcCccch--HHHHHHHHHhchHHHHHHHhc----CCCchhHHHHhHHHhhhhhhHHHHHHHHH--------h
Confidence 8877543 5566654 468899999999988777664 57777788888899999999998888865 4
Q ss_pred cchHHHHHHHhhcCChHHHHHHHHHh
Q 007808 499 ANFVMLSNIYGDLGRWKDVARIKVAM 524 (589)
Q Consensus 499 ~~~~~l~~~~~~~g~~~~A~~~~~~~ 524 (589)
.-|..|+..+...|.++.|...-++.
T Consensus 1221 SN~a~La~TLV~LgeyQ~AVD~aRKA 1246 (1666)
T KOG0985|consen 1221 SNFAKLASTLVYLGEYQGAVDAARKA 1246 (1666)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 56788888888889888887765555
No 96
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=99.07 E-value=1.4e-09 Score=100.21 Aligned_cols=249 Identities=13% Similarity=0.074 Sum_probs=164.5
Q ss_pred HHHhcCChhHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHhhCCCCCcchHHHHHHHHHhCCChHHHHHH
Q 007808 304 ACARLGALDFSKWVHVYAEYNGYQGNVCVGNALIDMYAKCGIIENAVDVFNSMDTKDLITWNTIISGLAMHGRGAGALSL 383 (589)
Q Consensus 304 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 383 (589)
-+.-.|++..+..-.. ......+.......-+.+++...|+.+.++.-...-..|.......+...+...++.+.++.-
T Consensus 10 n~fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl~ei~~~~~~~l~av~~la~y~~~~~~~e~~l~~ 88 (290)
T PF04733_consen 10 NQFYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVLSEIKKSSSPELQAVRLLAEYLSSPSDKESALEE 88 (290)
T ss_dssp HHHCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHHHHS-TTSSCCCHHHHHHHHHHCTSTTHHCHHHH
T ss_pred HHHHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHHHHhccCCChhHHHHHHHHHHHhCccchHHHHHH
Confidence 3445567766664443 222211223344556778889999988776665555555655555555544443555566666
Q ss_pred HHHHHHCCCCCCHhHH-HHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHhhC-CCC
Q 007808 384 FHEMKNAGEMPDGITF-IGILCACTHMGLVEEGLSYFQSMAMDYSIVPQIEHYGCMVDLLARAGRLAEAVDFVKRM-PIE 461 (589)
Q Consensus 384 ~~~m~~~~~~p~~~~~-~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~ 461 (589)
+++.......++..++ ......+...|++++|++++... .+.......+.+|.+.++++.|.+.++.| ...
T Consensus 89 l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~-------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~ 161 (290)
T PF04733_consen 89 LKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG-------GSLELLALAVQILLKMNRPDLAEKELKNMQQID 161 (290)
T ss_dssp HHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT-------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCS
T ss_pred HHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc-------CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 6554443333233333 33345677889999999886532 45666777889999999999999999999 445
Q ss_pred CCHHHHHHHHHHH----hcCCCHHHHHHHHHHHHccCCCCCcchHHHHHHHhhcCChHHHHHHHHHhhhCCCccCCccce
Q 007808 462 ADAVIWANLLGSC----RVYKNVELAELALERLTELEPKNPANFVMLSNIYGDLGRWKDVARIKVAMRDTGFKKLPGCSS 537 (589)
Q Consensus 462 p~~~~~~~l~~~~----~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 537 (589)
.|... ..+..++ .-.+.+.+|..+|+++.+..|.++..++.++.++...|+|++|.+++++..
T Consensus 162 eD~~l-~qLa~awv~l~~g~e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al------------ 228 (290)
T PF04733_consen 162 EDSIL-TQLAEAWVNLATGGEKYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEAL------------ 228 (290)
T ss_dssp CCHHH-HHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHC------------
T ss_pred CcHHH-HHHHHHHHHHHhCchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHH------------
Confidence 55433 3344332 223468999999999988877778899999999999999999999998874
Q ss_pred eeeCCeeeeeccccCCCchHHHHHHHHHHHHcccCCC-CcchHhhhhhc
Q 007808 538 IEVNEVVMLGCLSRELDRKSIVRAEANMIKLLPQNNH-PLTFIVVIFST 585 (589)
Q Consensus 538 ~~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~-~~~~~~~~~~~ 585 (589)
+.+|++++++.++.-+..-+|+.++ +.++++-|...
T Consensus 229 ------------~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~ 265 (290)
T PF04733_consen 229 ------------EKDPNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQS 265 (290)
T ss_dssp ------------CC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHH
T ss_pred ------------HhccCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHh
Confidence 7889999999999999999999966 55677766644
No 97
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=99.07 E-value=4e-06 Score=83.51 Aligned_cols=204 Identities=15% Similarity=0.144 Sum_probs=110.5
Q ss_pred CccchHHHHHHHHccCChhHHHHHhhcCCC-----------CCc-ccHHHHHHHHHcCCChhHHHHHHHHhhhCCCCCCc
Q 007808 33 SDYITPRIITACAQLKQMTYARKMFDKITD-----------QNV-VSWNAMFNGYAQNEFHRTVVVLFTQMKKLDAMPNC 100 (589)
Q Consensus 33 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-----------~~~-~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~ 100 (589)
+..+|..+.++|.+.++++-|.-.+-.|.. .|. ..-..+.-.-.+.|..++|..+|.+.++.
T Consensus 756 S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~e~eakvAvLAieLgMlEeA~~lYr~ckR~------ 829 (1416)
T KOG3617|consen 756 SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGEEDEAKVAVLAIELGMLEEALILYRQCKRY------ 829 (1416)
T ss_pred hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCcchhhHHHHHHHHHhhHHHHHHHHHHHHHH------
Confidence 446777888888888888877777766653 111 11112222234567777777777776643
Q ss_pred ccHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchHHHhHHHHHHHcCCChHHHHHHHccCCC-----------------
Q 007808 101 FTFPIVLKSCVKINALREGEELHCLVLKNGFRANIFVGTALIELYSTGKAIEAAYKVFGEMDE----------------- 163 (589)
Q Consensus 101 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~----------------- 163 (589)
..|-..|-..|.+++|.++-+.--+..+ ..+|..-..-+-..++.+.|++.|++...
T Consensus 830 ---DLlNKlyQs~g~w~eA~eiAE~~DRiHL---r~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e 903 (1416)
T KOG3617|consen 830 ---DLLNKLYQSQGMWSEAFEIAETKDRIHL---RNTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIE 903 (1416)
T ss_pred ---HHHHHHHHhcccHHHHHHHHhhccceeh---hhhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHH
Confidence 2333444456777777666543222111 12344444444555667777777665432
Q ss_pred ------CCeehHHHHHHHHHhCCCHHHHHHHHHhCCCCChhHHHHHHHHHhcCCChHHHHHHhcccCCCChhhHHHHHHH
Q 007808 164 ------RNVVVWTSMINGYISCGDIVSARCLFELAPERDVILWNTIVSGYIDVRNMIEARKLFDQMPKKDVISWNTMLSG 237 (589)
Q Consensus 164 ------~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~ 237 (589)
+|...|.-...-+-..|+.+.|+.+|.... -|.++.+..+-.|+.++|-++-++- .|......+...
T Consensus 904 ~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~-----D~fs~VrI~C~qGk~~kAa~iA~es--gd~AAcYhlaR~ 976 (1416)
T KOG3617|consen 904 QYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAK-----DYFSMVRIKCIQGKTDKAARIAEES--GDKAACYHLARM 976 (1416)
T ss_pred HHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhh-----hhhhheeeEeeccCchHHHHHHHhc--ccHHHHHHHHHH
Confidence 244445555555555666666666666432 2334444444455555554444431 334444455566
Q ss_pred HHhcCCHHHHHHHHhhCC
Q 007808 238 YANNGDVEECKRLFEEMP 255 (589)
Q Consensus 238 ~~~~~~~~~A~~~~~~~~ 255 (589)
|-..|++.+|...|.+..
T Consensus 977 YEn~g~v~~Av~FfTrAq 994 (1416)
T KOG3617|consen 977 YENDGDVVKAVKFFTRAQ 994 (1416)
T ss_pred hhhhHHHHHHHHHHHHHH
Confidence 666666666666655543
No 98
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.06 E-value=2e-07 Score=81.56 Aligned_cols=406 Identities=11% Similarity=0.024 Sum_probs=224.9
Q ss_pred HHHHHHHHHcCCChhHHHHHHHHhhhCCCCCCcccHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchHHHhHHHHHHHc
Q 007808 68 WNAMFNGYAQNEFHRTVVVLFTQMKKLDAMPNCFTFPIVLKSCVKINALREGEELHCLVLKNGFRANIFVGTALIELYST 147 (589)
Q Consensus 68 ~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 147 (589)
+.+++..+.+..++..|++++..-.++. +.+......|..+|....++..|...|+++-..- |...-|...
T Consensus 13 ftaviy~lI~d~ry~DaI~~l~s~~Er~-p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~--P~~~qYrlY------ 83 (459)
T KOG4340|consen 13 FTAVVYRLIRDARYADAIQLLGSELERS-PRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLH--PELEQYRLY------ 83 (459)
T ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC--hHHHHHHHH------
Confidence 4555555666666666666666555543 1144445555555555566666666666654432 222222210
Q ss_pred CCChHHHHHHHccCCCCCeehHHHHHHHHHhCCCHHHHHHHHHhCCCCC-hh--HHHHHHHHHhcCCChHHHHHHhcccC
Q 007808 148 GKAIEAAYKVFGEMDERNVVVWTSMINGYISCGDIVSARCLFELAPERD-VI--LWNTIVSGYIDVRNMIEARKLFDQMP 224 (589)
Q Consensus 148 ~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-~~--~~~~l~~~~~~~g~~~~a~~~~~~~~ 224 (589)
-...+.+.+.+.+|+++...|.+.+ .. ....-.....+.+++..+..++++..
T Consensus 84 ------------------------~AQSLY~A~i~ADALrV~~~~~D~~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp 139 (459)
T KOG4340|consen 84 ------------------------QAQSLYKACIYADALRVAFLLLDNPALHSRVLQLQAAIKYSEGDLPGSRSLVEQLP 139 (459)
T ss_pred ------------------------HHHHHHHhcccHHHHHHHHHhcCCHHHHHHHHHHHHHHhcccccCcchHHHHHhcc
Confidence 1223334444455555554444321 11 11111122345677777888888776
Q ss_pred C-CChhhHHHHHHHHHhcCCHHHHHHHHhhCCC----CCchhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCcHHH--
Q 007808 225 K-KDVISWNTMLSGYANNGDVEECKRLFEEMPE----RNVFSWNGLIGGYANNGLFFEVLDAFKRMLTEGRVFPNDAT-- 297 (589)
Q Consensus 225 ~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~----~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~-- 297 (589)
. .+..+.+.......+.|+.+.|.+-|+...+ .....||. .-+..+.|+++.|+++..+++++| ++-.+..
T Consensus 140 ~en~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyqpllAYni-ALaHy~~~qyasALk~iSEIieRG-~r~HPElgI 217 (459)
T KOG4340|consen 140 SENEADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQPLLAYNL-ALAHYSSRQYASALKHISEIIERG-IRQHPELGI 217 (459)
T ss_pred CCCccchhccchheeeccccHHHHHHHHHHHHhhcCCCchhHHHH-HHHHHhhhhHHHHHHHHHHHHHhh-hhcCCccCc
Confidence 3 5666666667777788999999999988876 34456664 445567789999999999999887 4322110
Q ss_pred --HHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHhhCCCC-----CcchHHHHHHH
Q 007808 298 --IVTVLSACARLGALDFSKWVHVYAEYNGYQGNVCVGNALIDMYAKCGIIENAVDVFNSMDTK-----DLITWNTIISG 370 (589)
Q Consensus 298 --~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~~~~~~l~~~ 370 (589)
-...+. ....|+.- . +... .-+..+|.-.-.+.+.|+.+.|.+-+..|+.+ |++|...+.-.
T Consensus 218 Gm~tegiD-vrsvgNt~---~----lh~S---al~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~ 286 (459)
T KOG4340|consen 218 GMTTEGID-VRSVGNTL---V----LHQS---ALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALM 286 (459)
T ss_pred cceeccCc-hhcccchH---H----HHHH---HHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHh
Confidence 000000 00000000 0 0000 01223344444567889999999999999854 77776655332
Q ss_pred HHhCCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhc-CCHH
Q 007808 371 LAMHGRGAGALSLFHEMKNAGEMPDGITFIGILCACTHMGLVEEGLSYFQSMAMDYSIVPQIEHYGCMVDLLARA-GRLA 449 (589)
Q Consensus 371 ~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~ 449 (589)
- ..+++.+..+-++-+...+ +-...||..++-.|++..-++-|..++.+-....-.-.+...|+ |++++.-+ -..+
T Consensus 287 n-~~~~p~~g~~KLqFLL~~n-PfP~ETFANlLllyCKNeyf~lAADvLAEn~~lTyk~L~~Yly~-LLdaLIt~qT~pE 363 (459)
T KOG4340|consen 287 N-MDARPTEGFEKLQFLLQQN-PFPPETFANLLLLYCKNEYFDLAADVLAENAHLTYKFLTPYLYD-LLDALITCQTAPE 363 (459)
T ss_pred c-ccCCccccHHHHHHHHhcC-CCChHHHHHHHHHHhhhHHHhHHHHHHhhCcchhHHHhhHHHHH-HHHHHHhCCCCHH
Confidence 2 2456666666666666643 23567899999999999999999888755421100012233333 45555444 3567
Q ss_pred HHHHHHhhCCCCC--CHHHHHHHHHHHhcCCC---HHHHHHHHHHHHccCCCCCcchHHHHHHHhhcCChHHHHHHHHHh
Q 007808 450 EAVDFVKRMPIEA--DAVIWANLLGSCRVYKN---VELAELALERLTELEPKNPANFVMLSNIYGDLGRWKDVARIKVAM 524 (589)
Q Consensus 450 ~A~~~~~~~~~~p--~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 524 (589)
+|++-++.+...- .......-++.-...++ ...|++-|+..+++-- .+....+++|.+..++.-++++|..-
T Consensus 364 ea~KKL~~La~~l~~kLRklAi~vQe~r~~~dd~a~R~ai~~Yd~~LE~YL---PVlMa~AkiyW~~~Dy~~vEk~Fr~S 440 (459)
T KOG4340|consen 364 EAFKKLDGLAGMLTEKLRKLAIQVQEARHNRDDEAIRKAVNEYDETLEKYL---PVLMAQAKIYWNLEDYPMVEKIFRKS 440 (459)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHH---HHHHHHHHhhccccccHHHHHHHHHH
Confidence 7766665542000 00111111111122222 3345555666666432 15677889999999999999998766
Q ss_pred h
Q 007808 525 R 525 (589)
Q Consensus 525 ~ 525 (589)
.
T Consensus 441 v 441 (459)
T KOG4340|consen 441 V 441 (459)
T ss_pred H
Confidence 4
No 99
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=99.06 E-value=1.2e-07 Score=93.95 Aligned_cols=223 Identities=17% Similarity=0.135 Sum_probs=139.9
Q ss_pred HHccCChhHHHHHhhcCCCCCcccHHHHHHHHHcCCChhHHHHHHHHhhhC-C-------C-CCCcccHHHHHHHHhccC
Q 007808 44 CAQLKQMTYARKMFDKITDQNVVSWNAMFNGYAQNEFHRTVVVLFTQMKKL-D-------A-MPNCFTFPIVLKSCVKIN 114 (589)
Q Consensus 44 ~~~~~~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~-~-------~-~p~~~~~~~ll~~~~~~~ 114 (589)
|...|+.+.|.+-.+-+. ....|..+.+.|.+..+.+-|.-.+..|... | . .|+ .+=..+.-.....|
T Consensus 738 yvtiG~MD~AfksI~~Ik--S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~-e~eakvAvLAieLg 814 (1416)
T KOG3617|consen 738 YVTIGSMDAAFKSIQFIK--SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGE-EDEAKVAVLAIELG 814 (1416)
T ss_pred EEEeccHHHHHHHHHHHh--hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCc-chhhHHHHHHHHHh
Confidence 456788888888776654 4567899999999888888887777666431 1 1 122 22222333345678
Q ss_pred ChHHHHHHHHHHHHhCCCCchHHHhHHHHHHHcCCChHHHHHHHccCCC-CCeehHHHHHHHHHhCCCHHHHHHHHHhCC
Q 007808 115 ALREGEELHCLVLKNGFRANIFVGTALIELYSTGKAIEAAYKVFGEMDE-RNVVVWTSMINGYISCGDIVSARCLFELAP 193 (589)
Q Consensus 115 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 193 (589)
.+++|..+|.+-.+.. .|-+.|-..|.+++|.++-+.-.. .-..+|.....-+-..++++.|++.|++..
T Consensus 815 MlEeA~~lYr~ckR~D---------LlNKlyQs~g~w~eA~eiAE~~DRiHLr~Tyy~yA~~Lear~Di~~AleyyEK~~ 885 (1416)
T KOG3617|consen 815 MLEEALILYRQCKRYD---------LLNKLYQSQGMWSEAFEIAETKDRIHLRNTYYNYAKYLEARRDIEAALEYYEKAG 885 (1416)
T ss_pred hHHHHHHHHHHHHHHH---------HHHHHHHhcccHHHHHHHHhhccceehhhhHHHHHHHHHhhccHHHHHHHHHhcC
Confidence 8999999999886643 355667788999999988765333 122467777777778899999999998764
Q ss_pred CC-----------------------ChhHHHHHHHHHhcCCChHHHHHHhcccCCCChhhHHHHHHHHHhcCCHHHHHHH
Q 007808 194 ER-----------------------DVILWNTIVSGYIDVRNMIEARKLFDQMPKKDVISWNTMLSGYANNGDVEECKRL 250 (589)
Q Consensus 194 ~~-----------------------~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 250 (589)
.+ |...|.-....+-..|+.+.|+.+|... .-|..++...|-.|+.++|-++
T Consensus 886 ~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A-----~D~fs~VrI~C~qGk~~kAa~i 960 (1416)
T KOG3617|consen 886 VHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSA-----KDYFSMVRIKCIQGKTDKAARI 960 (1416)
T ss_pred ChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHh-----hhhhhheeeEeeccCchHHHHH
Confidence 32 3333333333344455555555555432 2344444555555555555555
Q ss_pred HhhCCCCCchhHHHHHHHHHhCCChHHHHHHHHHH
Q 007808 251 FEEMPERNVFSWNGLIGGYANNGLFFEVLDAFKRM 285 (589)
Q Consensus 251 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 285 (589)
-++- .|..+...|.+.|-..|++.+|+..|.+.
T Consensus 961 A~es--gd~AAcYhlaR~YEn~g~v~~Av~FfTrA 993 (1416)
T KOG3617|consen 961 AEES--GDKAACYHLARMYENDGDVVKAVKFFTRA 993 (1416)
T ss_pred HHhc--ccHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 4432 24445556667777777777777766554
No 100
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=99.02 E-value=2.8e-08 Score=85.85 Aligned_cols=161 Identities=16% Similarity=0.136 Sum_probs=129.0
Q ss_pred CCCHhHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHhhC--CCCCCHHHHHHH
Q 007808 393 MPDGITFIGILCACTHMGLVEEGLSYFQSMAMDYSIVPQIEHYGCMVDLLARAGRLAEAVDFVKRM--PIEADAVIWANL 470 (589)
Q Consensus 393 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l 470 (589)
.|+......+...+...|+-+....+...... ....|......++....+.|++.+|+..+.+. ..++|...|+.+
T Consensus 63 ~p~d~~i~~~a~a~~~~G~a~~~l~~~~~~~~--~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~l 140 (257)
T COG5010 63 NPEDLSIAKLATALYLRGDADSSLAVLQKSAI--AYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLL 140 (257)
T ss_pred CcchHHHHHHHHHHHhcccccchHHHHhhhhc--cCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhHH
Confidence 55333335566677777888888887776543 33445556667888899999999999999988 345688889999
Q ss_pred HHHHhcCCCHHHHHHHHHHHHccCCCCCcchHHHHHHHhhcCChHHHHHHHHHhhhCCCccCCccceeeeCCeeeeeccc
Q 007808 471 LGSCRVYKNVELAELALERLTELEPKNPANFVMLSNIYGDLGRWKDVARIKVAMRDTGFKKLPGCSSIEVNEVVMLGCLS 550 (589)
Q Consensus 471 ~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 550 (589)
..+|.+.|+.+.|...|.+++++.|+++..+++++..|.-.|++++|..++.+.. .
T Consensus 141 gaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~------------------------l 196 (257)
T COG5010 141 GAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAY------------------------L 196 (257)
T ss_pred HHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHH------------------------h
Confidence 9999999999999999999999999999999999999999999999999988885 3
Q ss_pred cCCCchHHHHHHHHHHHHcccCCCCcchH
Q 007808 551 RELDRKSIVRAEANMIKLLPQNNHPLTFI 579 (589)
Q Consensus 551 ~~p~~~~~~~~l~~~~~~~~~~~~~~~~~ 579 (589)
..|.+..+..+|+.+....|+.++|.++.
T Consensus 197 ~~~ad~~v~~NLAl~~~~~g~~~~A~~i~ 225 (257)
T COG5010 197 SPAADSRVRQNLALVVGLQGDFREAEDIA 225 (257)
T ss_pred CCCCchHHHHHHHHHHhhcCChHHHHhhc
Confidence 34558888888888888888888876654
No 101
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.00 E-value=9e-07 Score=86.48 Aligned_cols=293 Identities=10% Similarity=-0.045 Sum_probs=168.7
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHhhCCC---CCch---hHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCcHHHHHHHHH
Q 007808 230 SWNTMLSGYANNGDVEECKRLFEEMPE---RNVF---SWNGLIGGYANNGLFFEVLDAFKRMLTEGRVFPNDATIVTVLS 303 (589)
Q Consensus 230 ~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~---~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~ 303 (589)
.|..+...+...|+.+.+.+.+....+ ++.. ........+...|++++|.+.+++..+.. +.+...+.. ..
T Consensus 8 a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~--P~~~~a~~~-~~ 84 (355)
T cd05804 8 GHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDY--PRDLLALKL-HL 84 (355)
T ss_pred HHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCcHHHHHH-hH
Confidence 344444555555666555444444332 1211 12222345667788888888888887754 223333332 21
Q ss_pred HHHh----cCChhHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHhhCCC---CCcchHHHHHHHHHhCCC
Q 007808 304 ACAR----LGALDFSKWVHVYAEYNGYQGNVCVGNALIDMYAKCGIIENAVDVFNSMDT---KDLITWNTIISGLAMHGR 376 (589)
Q Consensus 304 ~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~ 376 (589)
.+.. .+..+.+.+.+.. .....+........+...+...|++++|...+++..+ .+...+..+..++...|+
T Consensus 85 ~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~ 163 (355)
T cd05804 85 GAFGLGDFSGMRDHVARVLPL-WAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGR 163 (355)
T ss_pred HHHHhcccccCchhHHHHHhc-cCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCC
Confidence 2222 3444444444433 1111222334445566778888999999888887763 355677788888889999
Q ss_pred hHHHHHHHHHHHHCCC-CCCH--hHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHH-H--HHHHHHHhcCCHHH
Q 007808 377 GAGALSLFHEMKNAGE-MPDG--ITFIGILCACTHMGLVEEGLSYFQSMAMDYSIVPQIEHY-G--CMVDLLARAGRLAE 450 (589)
Q Consensus 377 ~~~A~~~~~~m~~~~~-~p~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~-~--~l~~~~~~~g~~~~ 450 (589)
+++|..++++...... .|+. ..|..+...+...|++++|..++++........+..... + .++.-+...|....
T Consensus 164 ~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~ 243 (355)
T cd05804 164 FKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDV 243 (355)
T ss_pred HHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCCh
Confidence 9999999988876421 1222 235567778888899999999998875321111222111 1 22333333443222
Q ss_pred HHHH---HhhC-CCCCC---HHHHHHHHHHHhcCCCHHHHHHHHHHHHccC-C--------CCCcchHHHHHHHhhcCCh
Q 007808 451 AVDF---VKRM-PIEAD---AVIWANLLGSCRVYKNVELAELALERLTELE-P--------KNPANFVMLSNIYGDLGRW 514 (589)
Q Consensus 451 A~~~---~~~~-~~~p~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p--------~~~~~~~~l~~~~~~~g~~ 514 (589)
+.+. .... +..|. .........++...|+.++|...++.+.... + .........+.++...|++
T Consensus 244 ~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~ 323 (355)
T cd05804 244 GDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNY 323 (355)
T ss_pred HHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCH
Confidence 2222 1111 11011 1222245567788999999999998886622 1 1245556777788899999
Q ss_pred HHHHHHHHHhhh
Q 007808 515 KDVARIKVAMRD 526 (589)
Q Consensus 515 ~~A~~~~~~~~~ 526 (589)
++|.+.+.+...
T Consensus 324 ~~A~~~L~~al~ 335 (355)
T cd05804 324 ATALELLGPVRD 335 (355)
T ss_pred HHHHHHHHHHHH
Confidence 999999888753
No 102
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=99.00 E-value=1.1e-08 Score=93.30 Aligned_cols=181 Identities=10% Similarity=-0.024 Sum_probs=113.9
Q ss_pred CcchHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCC-H---hHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCCh-HH
Q 007808 360 DLITWNTIISGLAMHGRGAGALSLFHEMKNAGEMPD-G---ITFIGILCACTHMGLVEEGLSYFQSMAMDYSIVPQI-EH 434 (589)
Q Consensus 360 ~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~-~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~ 434 (589)
....+..++..+...|++++|...|+++... .|+ . ..+..+..++...|++++|...++++.+...-.|.. ..
T Consensus 32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a 109 (235)
T TIGR03302 32 PAEELYEEAKEALDSGDYTEAIKYFEALESR--YPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYA 109 (235)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHH
Confidence 4445666666677777777777777777663 232 1 345556666777777777777777776543222221 12
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHccCCCCCcc--------------
Q 007808 435 YGCMVDLLARAGRLAEAVDFVKRMPIEADAVIWANLLGSCRVYKNVELAELALERLTELEPKNPAN-------------- 500 (589)
Q Consensus 435 ~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~-------------- 500 (589)
+..+..++.+. +...+...|++++|.+.++++++..|+++..
T Consensus 110 ~~~~g~~~~~~------------------------~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~~~~~~~ 165 (235)
T TIGR03302 110 YYLRGLSNYNQ------------------------IDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRMDYLRNRL 165 (235)
T ss_pred HHHHHHHHHHh------------------------cccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHHH
Confidence 33333444332 0001112244555555555555555554332
Q ss_pred ---hHHHHHHHhhcCChHHHHHHHHHhhhCCCccCCccceeeeCCeeeeeccccCCCchHHHHHHHHHHHHcccCCCCcc
Q 007808 501 ---FVMLSNIYGDLGRWKDVARIKVAMRDTGFKKLPGCSSIEVNEVVMLGCLSRELDRKSIVRAEANMIKLLPQNNHPLT 577 (589)
Q Consensus 501 ---~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~ 577 (589)
...++..|.+.|++++|+..+++..+.. ..+|..+.++..++++|..+|+..+|+.
T Consensus 166 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~---------------------p~~~~~~~a~~~l~~~~~~lg~~~~A~~ 224 (235)
T TIGR03302 166 AGKELYVARFYLKRGAYVAAINRFETVVENY---------------------PDTPATEEALARLVEAYLKLGLKDLAQD 224 (235)
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHHC---------------------CCCcchHHHHHHHHHHHHHcCCHHHHHH
Confidence 2367788999999999999999986221 1246667999999999999999999999
Q ss_pred hHhhhhhccc
Q 007808 578 FIVVIFSTFA 587 (589)
Q Consensus 578 ~~~~~~~~~~ 587 (589)
+...|..-|.
T Consensus 225 ~~~~l~~~~~ 234 (235)
T TIGR03302 225 AAAVLGANYP 234 (235)
T ss_pred HHHHHHhhCC
Confidence 9988877663
No 103
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.98 E-value=1.3e-06 Score=85.34 Aligned_cols=305 Identities=10% Similarity=-0.007 Sum_probs=192.5
Q ss_pred chhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCcHHHH-HHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhHHHH--
Q 007808 259 VFSWNGLIGGYANNGLFFEVLDAFKRMLTEGRVFPNDATI-VTVLSACARLGALDFSKWVHVYAEYNGYQGNVCVGNA-- 335 (589)
Q Consensus 259 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~-~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-- 335 (589)
...|..+...+...|+.+.+.+.+....+.....++.... ......+...|+++.|..+++...+.. |.+...+..
T Consensus 6 ~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~~~ 84 (355)
T cd05804 6 ALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDY-PRDLLALKLHL 84 (355)
T ss_pred HHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHhH
Confidence 3456677777888888998888777776654223333222 222334678899999999999988874 444444442
Q ss_pred -HHHHHHhcCChHHHHHHHhhCCCCCc---chHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCc
Q 007808 336 -LIDMYAKCGIIENAVDVFNSMDTKDL---ITWNTIISGLAMHGRGAGALSLFHEMKNAGEMPDGITFIGILCACTHMGL 411 (589)
Q Consensus 336 -l~~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~ 411 (589)
........+..+.+.+.+......++ .....+...+...|++++|...+++..+.. +.+...+..+...+...|+
T Consensus 85 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~-p~~~~~~~~la~i~~~~g~ 163 (355)
T cd05804 85 GAFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELN-PDDAWAVHAVAHVLEMQGR 163 (355)
T ss_pred HHHHhcccccCchhHHHHHhccCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCC
Confidence 22222234566667776665333222 344456678889999999999999999853 3355677888889999999
Q ss_pred HHHHHHHHHHhHHhcCCCCCh--HHHHHHHHHHHhcCCHHHHHHHHhhCC-CCC--C-HHHH-H--HHHHHHhcCCCHHH
Q 007808 412 VEEGLSYFQSMAMDYSIVPQI--EHYGCMVDLLARAGRLAEAVDFVKRMP-IEA--D-AVIW-A--NLLGSCRVYKNVEL 482 (589)
Q Consensus 412 ~~~A~~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p--~-~~~~-~--~l~~~~~~~g~~~~ 482 (589)
+++|..++++........|+. ..|..+...+...|++++|.+++++.. ..| . .... + .++.-+...|....
T Consensus 164 ~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~ 243 (355)
T cd05804 164 FKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDV 243 (355)
T ss_pred HHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCCh
Confidence 999999999887532222333 345578899999999999999999862 223 1 1111 1 22233344443322
Q ss_pred HHHH---HHHHHccCCCC--CcchHHHHHHHhhcCChHHHHHHHHHhhhCCCccCCccceeeeCCeeeeeccccCCCchH
Q 007808 483 AELA---LERLTELEPKN--PANFVMLSNIYGDLGRWKDVARIKVAMRDTGFKKLPGCSSIEVNEVVMLGCLSRELDRKS 557 (589)
Q Consensus 483 A~~~---~~~~~~~~p~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 557 (589)
+.+. ........|.. ...-...+.++...|+.++|.+.++.+.......+. ....+....
T Consensus 244 ~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~---------------~~~~~~~~~ 308 (355)
T cd05804 244 GDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGRASSADD---------------NKQPARDVG 308 (355)
T ss_pred HHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCc---------------hhhhHHhhh
Confidence 2222 11111111221 222235677788999999999999998633221000 012334566
Q ss_pred HHHHHHHHHHHcccCCCCcchHh
Q 007808 558 IVRAEANMIKLLPQNNHPLTFIV 580 (589)
Q Consensus 558 ~~~~l~~~~~~~~~~~~~~~~~~ 580 (589)
+....+.++...|+.++|++.+.
T Consensus 309 ~~~l~A~~~~~~g~~~~A~~~L~ 331 (355)
T cd05804 309 LPLAEALYAFAEGNYATALELLG 331 (355)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHH
Confidence 67778888888888887776654
No 104
>PLN02789 farnesyltranstransferase
Probab=98.96 E-value=7.4e-08 Score=90.12 Aligned_cols=155 Identities=14% Similarity=0.113 Sum_probs=118.2
Q ss_pred HHHHHHhCCChHHHHHHHHHHHHCCCCCCH-hHHHHHHHHHhccC-cHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHh
Q 007808 367 IISGLAMHGRGAGALSLFHEMKNAGEMPDG-ITFIGILCACTHMG-LVEEGLSYFQSMAMDYSIVPQIEHYGCMVDLLAR 444 (589)
Q Consensus 367 l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~-~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 444 (589)
+-..+...++.++|+.+..++++ +.|+. ..|+.-..++...| ++++++..++++.+. .+.+..+|+....++.+
T Consensus 43 ~ra~l~~~e~serAL~lt~~aI~--lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~--npknyqaW~~R~~~l~~ 118 (320)
T PLN02789 43 FRAVYASDERSPRALDLTADVIR--LNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAED--NPKNYQIWHHRRWLAEK 118 (320)
T ss_pred HHHHHHcCCCCHHHHHHHHHHHH--HCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHH--CCcchHHhHHHHHHHHH
Confidence 33455667889999999999998 46654 45655555666667 679999999998763 33455667766666666
Q ss_pred cCCH--HHHHHHHhhC-CCCC-CHHHHHHHHHHHhcCCCHHHHHHHHHHHHccCCCCCcchHHHHHHHhhc---CCh---
Q 007808 445 AGRL--AEAVDFVKRM-PIEA-DAVIWANLLGSCRVYKNVELAELALERLTELEPKNPANFVMLSNIYGDL---GRW--- 514 (589)
Q Consensus 445 ~g~~--~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~---g~~--- 514 (589)
.|+. ++++++++++ ...| +...|+....++...|+++++++.++++++.+|.|..+|...+.++.+. |.+
T Consensus 119 l~~~~~~~el~~~~kal~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~~~l~~~~~~ 198 (320)
T PLN02789 119 LGPDAANKELEFTRKILSLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAWNQRYFVITRSPLLGGLEAM 198 (320)
T ss_pred cCchhhHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHHHHHHHHHHhcccccccccc
Confidence 7763 6788888777 4455 6788999999999999999999999999999999999999999998776 333
Q ss_pred -HHHHHHHHHhh
Q 007808 515 -KDVARIKVAMR 525 (589)
Q Consensus 515 -~~A~~~~~~~~ 525 (589)
++++.+.+++.
T Consensus 199 ~e~el~y~~~aI 210 (320)
T PLN02789 199 RDSELKYTIDAI 210 (320)
T ss_pred HHHHHHHHHHHH
Confidence 45666665654
No 105
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.96 E-value=6e-08 Score=84.55 Aligned_cols=144 Identities=8% Similarity=0.072 Sum_probs=111.1
Q ss_pred HHHHHhCCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCC
Q 007808 368 ISGLAMHGRGAGALSLFHEMKNAGEMPDGITFIGILCACTHMGLVEEGLSYFQSMAMDYSIVPQIEHYGCMVDLLARAGR 447 (589)
Q Consensus 368 ~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 447 (589)
+..|...|+++.+....+.+.. |. ..+...++.+++...++..++ .-+.+...|..+...|...|+
T Consensus 23 ~~~Y~~~g~~~~v~~~~~~~~~----~~--------~~~~~~~~~~~~i~~l~~~L~--~~P~~~~~w~~Lg~~~~~~g~ 88 (198)
T PRK10370 23 VGSYLLSPKWQAVRAEYQRLAD----PL--------HQFASQQTPEAQLQALQDKIR--ANPQNSEQWALLGEYYLWRND 88 (198)
T ss_pred HHHHHHcchHHHHHHHHHHHhC----cc--------ccccCchhHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHCCC
Confidence 3457778887776554433321 11 012235677788877777765 335668889999999999999
Q ss_pred HHHHHHHHhhC-CCCC-CHHHHHHHHHHH-hcCCC--HHHHHHHHHHHHccCCCCCcchHHHHHHHhhcCChHHHHHHHH
Q 007808 448 LAEAVDFVKRM-PIEA-DAVIWANLLGSC-RVYKN--VELAELALERLTELEPKNPANFVMLSNIYGDLGRWKDVARIKV 522 (589)
Q Consensus 448 ~~~A~~~~~~~-~~~p-~~~~~~~l~~~~-~~~g~--~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 522 (589)
+++|...|++. ...| +...+..+..++ ...|+ .++|.++++++++.+|+++.++..++..+.+.|++++|+..++
T Consensus 89 ~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~ 168 (198)
T PRK10370 89 YDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQ 168 (198)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHH
Confidence 99999999988 4556 566677777764 67777 5999999999999999999999999999999999999999999
Q ss_pred Hhh
Q 007808 523 AMR 525 (589)
Q Consensus 523 ~~~ 525 (589)
++.
T Consensus 169 ~aL 171 (198)
T PRK10370 169 KVL 171 (198)
T ss_pred HHH
Confidence 996
No 106
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.94 E-value=3.4e-08 Score=101.71 Aligned_cols=93 Identities=10% Similarity=0.091 Sum_probs=45.7
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHhhC-CCCCCH-HHHHHHHHHHhcCCCHHHHHHHHHHHHccCCCCCcchHHHHHHHh
Q 007808 432 IEHYGCMVDLLARAGRLAEAVDFVKRM-PIEADA-VIWANLLGSCRVYKNVELAELALERLTELEPKNPANFVMLSNIYG 509 (589)
Q Consensus 432 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 509 (589)
+..+-.|..+..+.|++++|..+++.. .+.|+. .....+..++.+.+++++|...+++++..+|+++..+..++.++.
T Consensus 86 ~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~~~~~~~a~~l~ 165 (694)
T PRK15179 86 ELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSAREILLEAKSWD 165 (694)
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCHHHHHHHHHHHH
Confidence 444444455555555555555555544 334432 223333344455555555555555555555555555555555555
Q ss_pred hcCChHHHHHHHHHh
Q 007808 510 DLGRWKDVARIKVAM 524 (589)
Q Consensus 510 ~~g~~~~A~~~~~~~ 524 (589)
+.|++++|+.+|+++
T Consensus 166 ~~g~~~~A~~~y~~~ 180 (694)
T PRK15179 166 EIGQSEQADACFERL 180 (694)
T ss_pred HhcchHHHHHHHHHH
Confidence 555555555555554
No 107
>PLN02789 farnesyltranstransferase
Probab=98.94 E-value=1.8e-07 Score=87.50 Aligned_cols=203 Identities=9% Similarity=0.066 Sum_probs=144.5
Q ss_pred HHhcCChHHHHHHHhhCCCC---CcchHHHHHHHHHhCC-ChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCcH--H
Q 007808 340 YAKCGIIENAVDVFNSMDTK---DLITWNTIISGLAMHG-RGAGALSLFHEMKNAGEMPDGITFIGILCACTHMGLV--E 413 (589)
Q Consensus 340 ~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~-~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~--~ 413 (589)
+...++.++|+.+..++... +..+|+....++...| ++++++..++++.+.. +-+..+|......+.+.|+. +
T Consensus 47 l~~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~n-pknyqaW~~R~~~l~~l~~~~~~ 125 (320)
T PLN02789 47 YASDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDN-PKNYQIWHHRRWLAEKLGPDAAN 125 (320)
T ss_pred HHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHC-CcchHHhHHHHHHHHHcCchhhH
Confidence 44456677777777766633 3345555555666666 5788899988888753 23445566555555555653 6
Q ss_pred HHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHhhC-CCCC-CHHHHHHHHHHHhcC---CC----HHHHH
Q 007808 414 EGLSYFQSMAMDYSIVPQIEHYGCMVDLLARAGRLAEAVDFVKRM-PIEA-DAVIWANLLGSCRVY---KN----VELAE 484 (589)
Q Consensus 414 ~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~---g~----~~~A~ 484 (589)
++..++++++. .-+-+...|+....++.+.|++++|++.++++ ...| +...|+.....+.+. |. .++++
T Consensus 126 ~el~~~~kal~--~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el 203 (320)
T PLN02789 126 KELEFTRKILS--LDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAWNQRYFVITRSPLLGGLEAMRDSEL 203 (320)
T ss_pred HHHHHHHHHHH--hCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHHHHHHHHHHhccccccccccHHHHH
Confidence 77888877765 23445778888888888889999999999888 3334 566777766665444 22 35788
Q ss_pred HHHHHHHccCCCCCcchHHHHHHHhhc----CChHHHHHHHHHhhhCCCccCCccceeeeCCeeeeeccccCCCchHHHH
Q 007808 485 LALERLTELEPKNPANFVMLSNIYGDL----GRWKDVARIKVAMRDTGFKKLPGCSSIEVNEVVMLGCLSRELDRKSIVR 560 (589)
Q Consensus 485 ~~~~~~~~~~p~~~~~~~~l~~~~~~~----g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ 560 (589)
++..+++.++|+|..+|..+..++... ++..+|.+...+.. +.+|+.+.+++
T Consensus 204 ~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~------------------------~~~~~s~~al~ 259 (320)
T PLN02789 204 KYTIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVL------------------------SKDSNHVFALS 259 (320)
T ss_pred HHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhh------------------------cccCCcHHHHH
Confidence 888999999999999999999999883 44566777776653 56799999999
Q ss_pred HHHHHHHHc
Q 007808 561 AEANMIKLL 569 (589)
Q Consensus 561 ~l~~~~~~~ 569 (589)
.|+.+|.+.
T Consensus 260 ~l~d~~~~~ 268 (320)
T PLN02789 260 DLLDLLCEG 268 (320)
T ss_pred HHHHHHHhh
Confidence 999999763
No 108
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.94 E-value=5.7e-07 Score=91.28 Aligned_cols=377 Identities=15% Similarity=0.088 Sum_probs=216.0
Q ss_pred hHHHHHHHccCCCCCe---ehHHHHHHHHHhCCCHHHHHHHHHhCCCC---ChhHHHHHHHHHhcCCChHHHHHHhcccC
Q 007808 151 IEAAYKVFGEMDERNV---VVWTSMINGYISCGDIVSARCLFELAPER---DVILWNTIVSGYIDVRNMIEARKLFDQMP 224 (589)
Q Consensus 151 ~~~A~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 224 (589)
...|...|-+....|+ ..|..|...|...-+...|.+.|+...+. |...+....+.|++..+++.|..+.-..-
T Consensus 474 ~~~al~ali~alrld~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~~~ 553 (1238)
T KOG1127|consen 474 SALALHALIRALRLDVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLRAA 553 (1238)
T ss_pred HHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHHHh
Confidence 5555555554444332 46778888888777888888888877654 45567777888888888888887743332
Q ss_pred CCC-----hhhHHHHHHHHHhcCCHHHHHHHHhhCCC---CCchhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCcHH
Q 007808 225 KKD-----VISWNTMLSGYANNGDVEECKRLFEEMPE---RNVFSWNGLIGGYANNGLFFEVLDAFKRMLTEGRVFPNDA 296 (589)
Q Consensus 225 ~~~-----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~ 296 (589)
+.+ ...|....-.|.+.++...|..-|+.... .|...|..+..+|...|++..|+++|.++.. +.|+..
T Consensus 554 qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~---LrP~s~ 630 (1238)
T KOG1127|consen 554 QKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASL---LRPLSK 630 (1238)
T ss_pred hhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHh---cCcHhH
Confidence 211 12233344556677888888888887775 3667788888888888888888888888776 345543
Q ss_pred HHHHH--HHHHHhcCChhHHHHHHHHHHHcC------CCCChhHHHHHHHHHHhcCChHHHHHHHhhCCC----------
Q 007808 297 TIVTV--LSACARLGALDFSKWVHVYAEYNG------YQGNVCVGNALIDMYAKCGIIENAVDVFNSMDT---------- 358 (589)
Q Consensus 297 ~~~~l--~~~~~~~~~~~~a~~~~~~~~~~~------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---------- 358 (589)
|... ....+..|.+.++...+..+.... ...-..++-.+...+...|-..+|.+.++.-.+
T Consensus 631 -y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~~ 709 (1238)
T KOG1127|consen 631 -YGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHSL 709 (1238)
T ss_pred -HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhh
Confidence 2222 223466778888877777655421 111222333333333334444444444443221
Q ss_pred -CCcchHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCcH---H---HHHHHHHHhHHhcCCCCC
Q 007808 359 -KDLITWNTIISGLAMHGRGAGALSLFHEMKNAGEMPDGITFIGILCACTHMGLV---E---EGLSYFQSMAMDYSIVPQ 431 (589)
Q Consensus 359 -~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~---~---~A~~~~~~~~~~~~~~~~ 431 (589)
.+...|-.+.+ |..+|-... .. .|+......+..-....+.. + -+.+.+-.-. .+..+
T Consensus 710 ~~~~~~Wi~asd----------ac~~f~q~e-~~-~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hl---sl~~~ 774 (1238)
T KOG1127|consen 710 QSDRLQWIVASD----------ACYIFSQEE-PS-IVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHL---SLAIH 774 (1238)
T ss_pred hhhHHHHHHHhH----------HHHHHHHhc-cc-chHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHH---HHhhc
Confidence 12222222222 222222221 00 11111111111111111111 1 1111111111 11223
Q ss_pred hHHHHHHHHHHHh-------c-CCHHHHHHHHhhC-CC-CCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHccCCCCCcch
Q 007808 432 IEHYGCMVDLLAR-------A-GRLAEAVDFVKRM-PI-EADAVIWANLLGSCRVYKNVELAELALERLTELEPKNPANF 501 (589)
Q Consensus 432 ~~~~~~l~~~~~~-------~-g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 501 (589)
+..|..|+..|.+ . .+...|+..+++. .. ..+..+|+.|.-. ...|++.-|...|-+.+..+|.+...|
T Consensus 775 ~~~WyNLGinylr~f~~l~et~~~~~~Ai~c~KkaV~L~ann~~~WnaLGVl-sg~gnva~aQHCfIks~~sep~~~~~W 853 (1238)
T KOG1127|consen 775 MYPWYNLGINYLRYFLLLGETMKDACTAIRCCKKAVSLCANNEGLWNALGVL-SGIGNVACAQHCFIKSRFSEPTCHCQW 853 (1238)
T ss_pred cchHHHHhHHHHHHHHHcCCcchhHHHHHHHHHHHHHHhhccHHHHHHHHHh-hccchhhhhhhhhhhhhhccccchhhe
Confidence 4455555554443 1 2234677777766 22 3456666666544 666888889999999888999988899
Q ss_pred HHHHHHHhhcCChHHHHHHHHHhhhCCCccCCccceeeeCCeeeeeccccCCCchHHHHHHHHHHHHccc
Q 007808 502 VMLSNIYGDLGRWKDVARIKVAMRDTGFKKLPGCSSIEVNEVVMLGCLSRELDRKSIVRAEANMIKLLPQ 571 (589)
Q Consensus 502 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 571 (589)
.+++.++.+..+++-|...+.+.. .++|+|...+--.+.+-.+.|+
T Consensus 854 ~NlgvL~l~n~d~E~A~~af~~~q------------------------SLdP~nl~~WlG~Ali~eavG~ 899 (1238)
T KOG1127|consen 854 LNLGVLVLENQDFEHAEPAFSSVQ------------------------SLDPLNLVQWLGEALIPEAVGR 899 (1238)
T ss_pred eccceeEEecccHHHhhHHHHhhh------------------------hcCchhhHHHHHHHHhHHHHHH
Confidence 999999999999999999988875 6777777766555555555553
No 109
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.88 E-value=4.8e-06 Score=92.27 Aligned_cols=353 Identities=12% Similarity=0.020 Sum_probs=213.8
Q ss_pred HHHHHhCCCHHHHHHHHHhCCCCChh--HHHHHHHHHhcCCChHHHHHHhcccCC----CChhhHHHHHHHHHhcCCHHH
Q 007808 173 INGYISCGDIVSARCLFELAPERDVI--LWNTIVSGYIDVRNMIEARKLFDQMPK----KDVISWNTMLSGYANNGDVEE 246 (589)
Q Consensus 173 ~~~~~~~g~~~~a~~~~~~~~~~~~~--~~~~l~~~~~~~g~~~~a~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~ 246 (589)
...+...|++.+|..........+.. ............|+++.+...++.+.. .+..........+...|++++
T Consensus 348 a~~~~~~g~~~~Al~~a~~a~d~~~~~~ll~~~a~~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~ 427 (903)
T PRK04841 348 AEAWLAQGFPSEAIHHALAAGDAQLLRDILLQHGWSLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSE 427 (903)
T ss_pred HHHHHHCCCHHHHHHHHHHCCCHHHHHHHHHHhHHHHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHH
Confidence 34455566666666655555433221 112223344567788877777776632 223333344455567888888
Q ss_pred HHHHHhhCCC----CC---c-----hhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCcH----HHHHHHHHHHHhcCC
Q 007808 247 CKRLFEEMPE----RN---V-----FSWNGLIGGYANNGLFFEVLDAFKRMLTEGRVFPND----ATIVTVLSACARLGA 310 (589)
Q Consensus 247 A~~~~~~~~~----~~---~-----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~----~~~~~l~~~~~~~~~ 310 (589)
+...+....+ .+ . .....+...+...|++++|...++.....- ...+. .....+...+...|+
T Consensus 428 a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~lg~~~~~~G~ 506 (903)
T PRK04841 428 VNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAEL-PLTWYYSRIVATSVLGEVHHCKGE 506 (903)
T ss_pred HHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC-CCccHHHHHHHHHHHHHHHHHcCC
Confidence 8888776532 11 1 112223345667899999999998877632 11121 234455556778899
Q ss_pred hhHHHHHHHHHHHcCC---CC--ChhHHHHHHHHHHhcCChHHHHHHHhhCCC-------CC----cchHHHHHHHHHhC
Q 007808 311 LDFSKWVHVYAEYNGY---QG--NVCVGNALIDMYAKCGIIENAVDVFNSMDT-------KD----LITWNTIISGLAMH 374 (589)
Q Consensus 311 ~~~a~~~~~~~~~~~~---~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-------~~----~~~~~~l~~~~~~~ 374 (589)
++.|...+.......- .+ .......+...+...|+++.|...+++... ++ ...+..+...+...
T Consensus 507 ~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~ 586 (903)
T PRK04841 507 LARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEW 586 (903)
T ss_pred HHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHh
Confidence 9999888887764311 11 123445566778889999999888776431 11 12344455667778
Q ss_pred CChHHHHHHHHHHHHC--CCCCC--HhHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHH-----HHHHHHHHhc
Q 007808 375 GRGAGALSLFHEMKNA--GEMPD--GITFIGILCACTHMGLVEEGLSYFQSMAMDYSIVPQIEHY-----GCMVDLLARA 445 (589)
Q Consensus 375 ~~~~~A~~~~~~m~~~--~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~-----~~l~~~~~~~ 445 (589)
|++++|...+++.... ...+. ...+..+.......|++++|...++.+..-.........+ ...+..+...
T Consensus 587 G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 666 (903)
T PRK04841 587 ARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMT 666 (903)
T ss_pred cCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHC
Confidence 9999999988887652 11122 2334445667778899999998888774321111111111 1122445567
Q ss_pred CCHHHHHHHHhhCCC-C-CCHH----HHHHHHHHHhcCCCHHHHHHHHHHHHccC------CCCCcchHHHHHHHhhcCC
Q 007808 446 GRLAEAVDFVKRMPI-E-ADAV----IWANLLGSCRVYKNVELAELALERLTELE------PKNPANFVMLSNIYGDLGR 513 (589)
Q Consensus 446 g~~~~A~~~~~~~~~-~-p~~~----~~~~l~~~~~~~g~~~~A~~~~~~~~~~~------p~~~~~~~~l~~~~~~~g~ 513 (589)
|+.+.|.+.+..... . .... .+..+..++...|++++|...++++.... +....++..++.++.+.|+
T Consensus 667 g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~ 746 (903)
T PRK04841 667 GDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGR 746 (903)
T ss_pred CCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCC
Confidence 889999888876631 1 1111 13345567788899999999999888742 1223467778888999999
Q ss_pred hHHHHHHHHHhhh
Q 007808 514 WKDVARIKVAMRD 526 (589)
Q Consensus 514 ~~~A~~~~~~~~~ 526 (589)
.++|.+.+.+..+
T Consensus 747 ~~~A~~~L~~Al~ 759 (903)
T PRK04841 747 KSEAQRVLLEALK 759 (903)
T ss_pred HHHHHHHHHHHHH
Confidence 9999998888864
No 110
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.87 E-value=1.9e-05 Score=80.55 Aligned_cols=114 Identities=13% Similarity=0.160 Sum_probs=81.1
Q ss_pred chhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhHHHHHHH
Q 007808 259 VFSWNGLIGGYANNGLFFEVLDAFKRMLTEGRVFPNDATIVTVLSACARLGALDFSKWVHVYAEYNGYQGNVCVGNALID 338 (589)
Q Consensus 259 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 338 (589)
+..|..+..+-.+.|...+|++-|-+. .|+..|..++..+.+.|.+++-..++..+.+..-.|.+ -+.|+-
T Consensus 1104 p~vWsqlakAQL~~~~v~dAieSyika-------dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~i--d~eLi~ 1174 (1666)
T KOG0985|consen 1104 PAVWSQLAKAQLQGGLVKDAIESYIKA-------DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYI--DSELIF 1174 (1666)
T ss_pred hHHHHHHHHHHHhcCchHHHHHHHHhc-------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccc--hHHHHH
Confidence 457888888888889988888776543 36677888999999999999998888888777655554 356888
Q ss_pred HHHhcCChHHHHHHHhhCCCCCcchHHHHHHHHHhCCChHHHHHHH
Q 007808 339 MYAKCGIIENAVDVFNSMDTKDLITWNTIISGLAMHGRGAGALSLF 384 (589)
Q Consensus 339 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 384 (589)
+|++.+++.+.++++. .||........+-|...|.++.|.-+|
T Consensus 1175 AyAkt~rl~elE~fi~---gpN~A~i~~vGdrcf~~~~y~aAkl~y 1217 (1666)
T KOG0985|consen 1175 AYAKTNRLTELEEFIA---GPNVANIQQVGDRCFEEKMYEAAKLLY 1217 (1666)
T ss_pred HHHHhchHHHHHHHhc---CCCchhHHHHhHHHhhhhhhHHHHHHH
Confidence 8999888877766543 344444444555555555555554444
No 111
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.87 E-value=1.6e-07 Score=85.62 Aligned_cols=180 Identities=12% Similarity=0.008 Sum_probs=131.3
Q ss_pred CCChhHHHHHHHHHHhcCChHHHHHHHhhCCC--C-Cc---chHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHh---
Q 007808 327 QGNVCVGNALIDMYAKCGIIENAVDVFNSMDT--K-DL---ITWNTIISGLAMHGRGAGALSLFHEMKNAGEMPDGI--- 397 (589)
Q Consensus 327 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~---~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~--- 397 (589)
+.....+..++..+...|++++|...|+++.. | ++ .++..+..++...|++++|+..++++.+. .|+..
T Consensus 30 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~ 107 (235)
T TIGR03302 30 EWPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRL--HPNHPDAD 107 (235)
T ss_pred cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--CcCCCchH
Confidence 34566778888899999999999999998763 2 22 36677889999999999999999999984 44322
Q ss_pred -HHHHHHHHHhcc--------CcHHHHHHHHHHhHHhcCCCCCh-HHHHHHHHHHHhcCCHHHHHHHHhhCCCCCCHHHH
Q 007808 398 -TFIGILCACTHM--------GLVEEGLSYFQSMAMDYSIVPQI-EHYGCMVDLLARAGRLAEAVDFVKRMPIEADAVIW 467 (589)
Q Consensus 398 -~~~~l~~~~~~~--------g~~~~A~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~ 467 (589)
++..+..++... |++++|.+.++.+... .|+. ..+..+... +...... . ...
T Consensus 108 ~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~---~p~~~~~~~a~~~~----~~~~~~~---~--------~~~ 169 (235)
T TIGR03302 108 YAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR---YPNSEYAPDAKKRM----DYLRNRL---A--------GKE 169 (235)
T ss_pred HHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH---CCCChhHHHHHHHH----HHHHHHH---H--------HHH
Confidence 455556666654 7899999999999764 3443 222222111 1111110 0 011
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHccCCCCC---cchHHHHHHHhhcCChHHHHHHHHHhhh
Q 007808 468 ANLLGSCRVYKNVELAELALERLTELEPKNP---ANFVMLSNIYGDLGRWKDVARIKVAMRD 526 (589)
Q Consensus 468 ~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 526 (589)
..+...+.+.|++++|...++++++..|+++ .++..++.++...|++++|..+++.+..
T Consensus 170 ~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~ 231 (235)
T TIGR03302 170 LYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGA 231 (235)
T ss_pred HHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 2455678899999999999999999877654 6899999999999999999999998863
No 112
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.85 E-value=2.3e-07 Score=88.80 Aligned_cols=249 Identities=14% Similarity=0.046 Sum_probs=181.2
Q ss_pred HHHHHhCCChHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCC
Q 007808 266 IGGYANNGLFFEVLDAFKRMLTEGRVFPNDATIVTVLSACARLGALDFSKWVHVYAEYNGYQGNVCVGNALIDMYAKCGI 345 (589)
Q Consensus 266 ~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 345 (589)
..-+.+.|++.+|.-.|+..++.. +-+...|..|.......++-..|+..+.+..+.. +.+....-.|.-.|...|.
T Consensus 292 G~~lm~nG~L~~A~LafEAAVkqd--P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~Ld-P~NleaLmaLAVSytNeg~ 368 (579)
T KOG1125|consen 292 GCNLMKNGDLSEAALAFEAAVKQD--PQHAEAWQKLGITQAENENEQNAISALRRCLELD-PTNLEALMALAVSYTNEGL 368 (579)
T ss_pred HHHHHhcCCchHHHHHHHHHHhhC--hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcC-CccHHHHHHHHHHHhhhhh
Confidence 445678888999999999988876 3456678888888888888888888888888876 6678888888889999999
Q ss_pred hHHHHHHHhhCCCCCc-chHHHHH---------HHHHhCCChHHHHHHHHHH-HHCCCCCCHhHHHHHHHHHhccCcHHH
Q 007808 346 IENAVDVFNSMDTKDL-ITWNTII---------SGLAMHGRGAGALSLFHEM-KNAGEMPDGITFIGILCACTHMGLVEE 414 (589)
Q Consensus 346 ~~~A~~~~~~~~~~~~-~~~~~l~---------~~~~~~~~~~~A~~~~~~m-~~~~~~p~~~~~~~l~~~~~~~g~~~~ 414 (589)
-..|.+.++.-....+ ..|.... ..+..........++|-++ ...+..+|+.....|.-.|.-.|++++
T Consensus 369 q~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdr 448 (579)
T KOG1125|consen 369 QNQALKMLDKWIRNKPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDR 448 (579)
T ss_pred HHHHHHHHHHHHHhCccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHH
Confidence 8899888876531100 0000000 0111112233444454444 445544677777788888889999999
Q ss_pred HHHHHHHhHHhcCCCC-ChHHHHHHHHHHHhcCCHHHHHHHHhhC-CCCCCH-HHHHHHHHHHhcCCCHHHHHHHHHHHH
Q 007808 415 GLSYFQSMAMDYSIVP-QIEHYGCMVDLLARAGRLAEAVDFVKRM-PIEADA-VIWANLLGSCRVYKNVELAELALERLT 491 (589)
Q Consensus 415 A~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~ 491 (589)
|...|+.++. ++| |..+||.|...+....+.++|+..|.++ .+.|+. .....|..+|...|.+++|.++|-.++
T Consensus 449 aiDcf~~AL~---v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL 525 (579)
T KOG1125|consen 449 AVDCFEAALQ---VKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEAL 525 (579)
T ss_pred HHHHHHHHHh---cCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHH
Confidence 9999999984 455 4789999999999999999999999998 678864 556678889999999999999999999
Q ss_pred ccCCCC----------CcchHHHHHHHhhcCChHHHHHH
Q 007808 492 ELEPKN----------PANFVMLSNIYGDLGRWKDVARI 520 (589)
Q Consensus 492 ~~~p~~----------~~~~~~l~~~~~~~g~~~~A~~~ 520 (589)
.+.+.+ ..+|..|=.++.-.++.|-+.+.
T Consensus 526 ~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~~a 564 (579)
T KOG1125|consen 526 SMQRKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQEA 564 (579)
T ss_pred HhhhcccccccCCcchHHHHHHHHHHHHHcCCchHHHHh
Confidence 876541 13555555556666666544443
No 113
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.81 E-value=1.1e-07 Score=78.42 Aligned_cols=124 Identities=10% Similarity=-0.014 Sum_probs=101.9
Q ss_pred HHHHHHHHHCCCCCCHhHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHhhC-C
Q 007808 381 LSLFHEMKNAGEMPDGITFIGILCACTHMGLVEEGLSYFQSMAMDYSIVPQIEHYGCMVDLLARAGRLAEAVDFVKRM-P 459 (589)
Q Consensus 381 ~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~ 459 (589)
..++++..+ +.|+. +..+...+...|++++|...|+.++. --+.+...|..+..++.+.|++++|+..|+++ .
T Consensus 13 ~~~~~~al~--~~p~~--~~~~g~~~~~~g~~~~A~~~~~~al~--~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~ 86 (144)
T PRK15359 13 EDILKQLLS--VDPET--VYASGYASWQEGDYSRAVIDFSWLVM--AQPWSWRAHIALAGTWMMLKEYTTAINFYGHALM 86 (144)
T ss_pred HHHHHHHHH--cCHHH--HHHHHHHHHHcCCHHHHHHHHHHHHH--cCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 356666666 45654 45567788899999999999999874 23446788899999999999999999999998 4
Q ss_pred CCC-CHHHHHHHHHHHhcCCCHHHHHHHHHHHHccCCCCCcchHHHHHHHhh
Q 007808 460 IEA-DAVIWANLLGSCRVYKNVELAELALERLTELEPKNPANFVMLSNIYGD 510 (589)
Q Consensus 460 ~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 510 (589)
..| +...+..+..++...|++++|+..|++++++.|+++..+...+.+...
T Consensus 87 l~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~~~ 138 (144)
T PRK15359 87 LDASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNAQIM 138 (144)
T ss_pred cCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Confidence 445 677888888999999999999999999999999999999888777644
No 114
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.81 E-value=1.7e-06 Score=75.88 Aligned_cols=177 Identities=15% Similarity=0.105 Sum_probs=100.6
Q ss_pred cCChHHHHHHHhhCC-CCCcchHHHHHHHHHhCCChHHHHHHHHHHHH-CCCCCCHhHHHHHHHHHhccCcHHHHHHHHH
Q 007808 343 CGIIENAVDVFNSMD-TKDLITWNTIISGLAMHGRGAGALSLFHEMKN-AGEMPDGITFIGILCACTHMGLVEEGLSYFQ 420 (589)
Q Consensus 343 ~g~~~~A~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~-~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 420 (589)
.+++..+..+.++.. +.+..+.+.......+.|+++.|++-|+...+ .|..| ...|+..+ +..+.|+++.|+++..
T Consensus 125 e~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyqp-llAYniAL-aHy~~~qyasALk~iS 202 (459)
T KOG4340|consen 125 EGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQP-LLAYNLAL-AHYSSRQYASALKHIS 202 (459)
T ss_pred cccCcchHHHHHhccCCCccchhccchheeeccccHHHHHHHHHHHHhhcCCCc-hhHHHHHH-HHHhhhhHHHHHHHHH
Confidence 344555555555554 23334444444444555566666655555554 23322 23343322 2334455555555555
Q ss_pred HhHHhcCCC-------------CCh---------------HHHHHHHHHHHhcCCHHHHHHHHhhCC----CCCCHHHHH
Q 007808 421 SMAMDYSIV-------------PQI---------------EHYGCMVDLLARAGRLAEAVDFVKRMP----IEADAVIWA 468 (589)
Q Consensus 421 ~~~~~~~~~-------------~~~---------------~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~p~~~~~~ 468 (589)
+++.+ |++ ||+ ..+|.-...+.+.|+++.|.+.+-.|+ ...|+.|.+
T Consensus 203 EIieR-G~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLH 281 (459)
T KOG4340|consen 203 EIIER-GIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLH 281 (459)
T ss_pred HHHHh-hhhcCCccCccceeccCchhcccchHHHHHHHHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhh
Confidence 55432 221 111 112222344667888888888888884 334667766
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHccCCCCCcchHHHHHHHhhcCChHHHHHHHHH
Q 007808 469 NLLGSCRVYKNVELAELALERLTELEPKNPANFVMLSNIYGDLGRWKDVARIKVA 523 (589)
Q Consensus 469 ~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 523 (589)
.+.-. -..+++....+-++-+++++|-.++++.++.-+|++..-++-|..++-+
T Consensus 282 N~Al~-n~~~~p~~g~~KLqFLL~~nPfP~ETFANlLllyCKNeyf~lAADvLAE 335 (459)
T KOG4340|consen 282 NQALM-NMDARPTEGFEKLQFLLQQNPFPPETFANLLLLYCKNEYFDLAADVLAE 335 (459)
T ss_pred HHHHh-cccCCccccHHHHHHHHhcCCCChHHHHHHHHHHhhhHHHhHHHHHHhh
Confidence 55422 2345566677777778888887788888888888888888877766443
No 115
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.79 E-value=1.1e-05 Score=89.53 Aligned_cols=362 Identities=11% Similarity=-0.031 Sum_probs=227.7
Q ss_pred HHHHHhcCCChHHHHHHhcccCCCChh--hHHHHHHHHHhcCCHHHHHHHHhhCCC----CCchhHHHHHHHHHhCCChH
Q 007808 203 IVSGYIDVRNMIEARKLFDQMPKKDVI--SWNTMLSGYANNGDVEECKRLFEEMPE----RNVFSWNGLIGGYANNGLFF 276 (589)
Q Consensus 203 l~~~~~~~g~~~~a~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~A~~~~~~~~~----~~~~~~~~l~~~~~~~g~~~ 276 (589)
....+...|++.+|..........+.. ............|+++.+..+++.+.. .+..........+...|+++
T Consensus 347 aa~~~~~~g~~~~Al~~a~~a~d~~~~~~ll~~~a~~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~ 426 (903)
T PRK04841 347 AAEAWLAQGFPSEAIHHALAAGDAQLLRDILLQHGWSLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYS 426 (903)
T ss_pred HHHHHHHCCCHHHHHHHHHHCCCHHHHHHHHHHhHHHHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHH
Confidence 344456677777776665554332111 111222345567888888888887742 23333344556667889999
Q ss_pred HHHHHHHHHHHcCC-C----CCcH--HHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC----hhHHHHHHHHHHhcCC
Q 007808 277 EVLDAFKRMLTEGR-V----FPND--ATIVTVLSACARLGALDFSKWVHVYAEYNGYQGN----VCVGNALIDMYAKCGI 345 (589)
Q Consensus 277 ~A~~~~~~~~~~~~-~----~p~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~ 345 (589)
+|...+......-. . .+.. .........+...|+++.|...++.........+ ....+.+...+...|+
T Consensus 427 ~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~ 506 (903)
T PRK04841 427 EVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGE 506 (903)
T ss_pred HHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCC
Confidence 99999988755310 0 1111 1222233446688999999999998876321112 1234556677788999
Q ss_pred hHHHHHHHhhCCC-------CC--cchHHHHHHHHHhCCChHHHHHHHHHHHH----CCCC--C-CHhHHHHHHHHHhcc
Q 007808 346 IENAVDVFNSMDT-------KD--LITWNTIISGLAMHGRGAGALSLFHEMKN----AGEM--P-DGITFIGILCACTHM 409 (589)
Q Consensus 346 ~~~A~~~~~~~~~-------~~--~~~~~~l~~~~~~~~~~~~A~~~~~~m~~----~~~~--p-~~~~~~~l~~~~~~~ 409 (589)
+++|...+.+... +. ..++..+...+...|++++|...+++... .+.. | ....+..+...+...
T Consensus 507 ~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~ 586 (903)
T PRK04841 507 LARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEW 586 (903)
T ss_pred HHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHh
Confidence 9999999887652 11 13455567778899999999999888665 2211 1 123344555667778
Q ss_pred CcHHHHHHHHHHhHHhcC-CCC--ChHHHHHHHHHHHhcCCHHHHHHHHhhCC----CCCCHHHH-----HHHHHHHhcC
Q 007808 410 GLVEEGLSYFQSMAMDYS-IVP--QIEHYGCMVDLLARAGRLAEAVDFVKRMP----IEADAVIW-----ANLLGSCRVY 477 (589)
Q Consensus 410 g~~~~A~~~~~~~~~~~~-~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~p~~~~~-----~~l~~~~~~~ 477 (589)
|++++|...+++...... ..+ ....+..+...+...|++++|.+.++++. .......+ ...+..+...
T Consensus 587 G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 666 (903)
T PRK04841 587 ARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMT 666 (903)
T ss_pred cCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHC
Confidence 999999999887754211 112 23445556778889999999998887761 11111111 1112334568
Q ss_pred CCHHHHHHHHHHHHccCCCCCcc----hHHHHHHHhhcCChHHHHHHHHHhhhCCCccCCccceeeeCCeeeeeccccCC
Q 007808 478 KNVELAELALERLTELEPKNPAN----FVMLSNIYGDLGRWKDVARIKVAMRDTGFKKLPGCSSIEVNEVVMLGCLSREL 553 (589)
Q Consensus 478 g~~~~A~~~~~~~~~~~p~~~~~----~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 553 (589)
|+.+.|.+.+.......+..... +..++.++...|++++|...+++.....-. ....+
T Consensus 667 g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~------------------~g~~~ 728 (903)
T PRK04841 667 GDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARS------------------LRLMS 728 (903)
T ss_pred CCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH------------------hCchH
Confidence 99999999987766533322211 457888899999999999999988532100 01223
Q ss_pred CchHHHHHHHHHHHHcccCCCCcchHhhh
Q 007808 554 DRKSIVRAEANMIKLLPQNNHPLTFIVVI 582 (589)
Q Consensus 554 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 582 (589)
+...++..++.+|...|+..+|.+.+..-
T Consensus 729 ~~a~~~~~la~a~~~~G~~~~A~~~L~~A 757 (903)
T PRK04841 729 DLNRNLILLNQLYWQQGRKSEAQRVLLEA 757 (903)
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 45567888999999999988877766543
No 116
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.77 E-value=4.3e-08 Score=86.35 Aligned_cols=111 Identities=17% Similarity=0.154 Sum_probs=100.2
Q ss_pred HHHHHhcCCHHHHHHHHhhC-CCCC-CHHHHHHHHHHHhcCCCHHHHHHHHHHHHccCCCCCcchHHHHHHHhhcCChHH
Q 007808 439 VDLLARAGRLAEAVDFVKRM-PIEA-DAVIWANLLGSCRVYKNVELAELALERLTELEPKNPANFVMLSNIYGDLGRWKD 516 (589)
Q Consensus 439 ~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 516 (589)
.+-+.+.+++.+|+..|.++ .+.| |.+.|..-..+|.+.|.++.|++-.+.++.++|....+|..|+.+|...|++++
T Consensus 88 GN~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~ 167 (304)
T KOG0553|consen 88 GNKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEE 167 (304)
T ss_pred HHHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHH
Confidence 45677899999999999988 5666 566677778999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhCCCccCCccceeeeCCeeeeeccccCCCchHHHHHHHHHHHHcccCC
Q 007808 517 VARIKVAMRDTGFKKLPGCSSIEVNEVVMLGCLSRELDRKSIVRAEANMIKLLPQNN 573 (589)
Q Consensus 517 A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~ 573 (589)
|++.|++.. +++|+++.....|.++..++++..
T Consensus 168 A~~aykKaL------------------------eldP~Ne~~K~nL~~Ae~~l~e~~ 200 (304)
T KOG0553|consen 168 AIEAYKKAL------------------------ELDPDNESYKSNLKIAEQKLNEPK 200 (304)
T ss_pred HHHHHHhhh------------------------ccCCCcHHHHHHHHHHHHHhcCCC
Confidence 999999885 899999999999999998888776
No 117
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.77 E-value=3.8e-08 Score=85.78 Aligned_cols=142 Identities=11% Similarity=0.054 Sum_probs=115.5
Q ss_pred HHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHhhC-CCC-CCHHHHHHHHHHHhcCCCHH
Q 007808 404 CACTHMGLVEEGLSYFQSMAMDYSIVPQIEHYGCMVDLLARAGRLAEAVDFVKRM-PIE-ADAVIWANLLGSCRVYKNVE 481 (589)
Q Consensus 404 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~l~~~~~~~g~~~ 481 (589)
..|...|+++......+.+.. |. ..+...++.++++..+++. ... .+...|..+...|...|+++
T Consensus 24 ~~Y~~~g~~~~v~~~~~~~~~-----~~--------~~~~~~~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~~~ 90 (198)
T PRK10370 24 GSYLLSPKWQAVRAEYQRLAD-----PL--------HQFASQQTPEAQLQALQDKIRANPQNSEQWALLGEYYLWRNDYD 90 (198)
T ss_pred HHHHHcchHHHHHHHHHHHhC-----cc--------ccccCchhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHH
Confidence 468888998887655433211 11 0122366677887777765 334 47788999999999999999
Q ss_pred HHHHHHHHHHccCCCCCcchHHHHHHH-hhcCC--hHHHHHHHHHhhhCCCccCCccceeeeCCeeeeeccccCCCchHH
Q 007808 482 LAELALERLTELEPKNPANFVMLSNIY-GDLGR--WKDVARIKVAMRDTGFKKLPGCSSIEVNEVVMLGCLSRELDRKSI 558 (589)
Q Consensus 482 ~A~~~~~~~~~~~p~~~~~~~~l~~~~-~~~g~--~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 558 (589)
+|...|+++++++|+++..+..++.++ ...|+ .++|.+++++.. +.+|+++.+
T Consensus 91 ~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al------------------------~~dP~~~~a 146 (198)
T PRK10370 91 NALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTREMIDKAL------------------------ALDANEVTA 146 (198)
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHH------------------------HhCCCChhH
Confidence 999999999999999999999999975 77787 599999999986 899999999
Q ss_pred HHHHHHHHHHcccCCCCcchHhhh
Q 007808 559 VRAEANMIKLLPQNNHPLTFIVVI 582 (589)
Q Consensus 559 ~~~l~~~~~~~~~~~~~~~~~~~~ 582 (589)
+.+||.++++.|+.++|+.....+
T Consensus 147 l~~LA~~~~~~g~~~~Ai~~~~~a 170 (198)
T PRK10370 147 LMLLASDAFMQADYAQAIELWQKV 170 (198)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHH
Confidence 999999999999999999887764
No 118
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.75 E-value=9.3e-07 Score=92.84 Aligned_cols=201 Identities=12% Similarity=0.078 Sum_probs=168.5
Q ss_pred CCChhHHHHHHHHHHhcCChHHHHHHHhhCCCC--------CcchHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHhH
Q 007808 327 QGNVCVGNALIDMYAKCGIIENAVDVFNSMDTK--------DLITWNTIISGLAMHGRGAGALSLFHEMKNAGEMPDGIT 398 (589)
Q Consensus 327 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--------~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~ 398 (589)
|.+...|-..|......++.++|++++++..+. -...|.++++.....|.-+...++|+++.+. ...-..
T Consensus 1455 PNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqy--cd~~~V 1532 (1710)
T KOG1070|consen 1455 PNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQY--CDAYTV 1532 (1710)
T ss_pred CCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHh--cchHHH
Confidence 556677888888889999999999999987632 3357888888888888888999999999984 223456
Q ss_pred HHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHhhC-CCCCC---HHHHHHHHHHH
Q 007808 399 FIGILCACTHMGLVEEGLSYFQSMAMDYSIVPQIEHYGCMVDLLARAGRLAEAVDFVKRM-PIEAD---AVIWANLLGSC 474 (589)
Q Consensus 399 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~---~~~~~~l~~~~ 474 (589)
|..|...|.+.+.+++|.++++.|.++++ .....|..++..+.+..+-+.|..++.++ ..-|. .....-.+..-
T Consensus 1533 ~~~L~~iy~k~ek~~~A~ell~~m~KKF~--q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLE 1610 (1710)
T KOG1070|consen 1533 HLKLLGIYEKSEKNDEADELLRLMLKKFG--QTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLE 1610 (1710)
T ss_pred HHHHHHHHHHhhcchhHHHHHHHHHHHhc--chhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHH
Confidence 88899999999999999999999999776 66778999999999999999999999887 33443 33344445566
Q ss_pred hcCCCHHHHHHHHHHHHccCCCCCcchHHHHHHHhhcCChHHHHHHHHHhhhCCCcc
Q 007808 475 RVYKNVELAELALERLTELEPKNPANFVMLSNIYGDLGRWKDVARIKVAMRDTGFKK 531 (589)
Q Consensus 475 ~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 531 (589)
.+.|+.+++..+|+..+.-.|.-...|..+++.-.+.|+.+.+..+|+++...++++
T Consensus 1611 Fk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~ 1667 (1710)
T KOG1070|consen 1611 FKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSI 1667 (1710)
T ss_pred hhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCh
Confidence 789999999999999999999999999999999999999999999999998666654
No 119
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.72 E-value=2.4e-07 Score=91.00 Aligned_cols=188 Identities=18% Similarity=0.181 Sum_probs=130.1
Q ss_pred CCCChhHHHHHHHHHHhcCChHHHHHHHhhCCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHhHHHHHHHH
Q 007808 326 YQGNVCVGNALIDMYAKCGIIENAVDVFNSMDTKDLITWNTIISGLAMHGRGAGALSLFHEMKNAGEMPDGITFIGILCA 405 (589)
Q Consensus 326 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~ 405 (589)
.+|--..-..+...+...|-...|..+|+++ ..|.-.+.+|...|+..+|..+..+..+ -+|++..|..+.+.
T Consensus 394 lpp~Wq~q~~laell~slGitksAl~I~Erl-----emw~~vi~CY~~lg~~~kaeei~~q~le--k~~d~~lyc~LGDv 466 (777)
T KOG1128|consen 394 LPPIWQLQRLLAELLLSLGITKSALVIFERL-----EMWDPVILCYLLLGQHGKAEEINRQELE--KDPDPRLYCLLGDV 466 (777)
T ss_pred CCCcchHHHHHHHHHHHcchHHHHHHHHHhH-----HHHHHHHHHHHHhcccchHHHHHHHHhc--CCCcchhHHHhhhh
Confidence 3455555566777788888888888888864 4566777888888888888888877776 37788888888877
Q ss_pred HhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHhhC-CCCC-CHHHHHHHHHHHhcCCCHHHH
Q 007808 406 CTHMGLVEEGLSYFQSMAMDYSIVPQIEHYGCMVDLLARAGRLAEAVDFVKRM-PIEA-DAVIWANLLGSCRVYKNVELA 483 (589)
Q Consensus 406 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A 483 (589)
.....-+++|.++.+....+ .-..+.....+.++++++.+.|+.- .+.| ...+|-.+..+..+.++++.|
T Consensus 467 ~~d~s~yEkawElsn~~sar--------A~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~a 538 (777)
T KOG1128|consen 467 LHDPSLYEKAWELSNYISAR--------AQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAA 538 (777)
T ss_pred ccChHHHHHHHHHhhhhhHH--------HHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHH
Confidence 77777777777777655322 1111222333467777777777654 3344 455666666666777777777
Q ss_pred HHHHHHHHccCCCCCcchHHHHHHHhhcCChHHHHHHHHHhhhCC
Q 007808 484 ELALERLTELEPKNPANFVMLSNIYGDLGRWKDVARIKVAMRDTG 528 (589)
Q Consensus 484 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 528 (589)
.+.|...+.++|++.+.|+++.-.|.+.|+..+|...+++..+.+
T Consensus 539 v~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn 583 (777)
T KOG1128|consen 539 VKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN 583 (777)
T ss_pred HHHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC
Confidence 777777777777777777777777777777777777777775544
No 120
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.71 E-value=9.2e-07 Score=91.39 Aligned_cols=132 Identities=12% Similarity=0.054 Sum_probs=78.4
Q ss_pred CcchHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCH-hHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHH
Q 007808 360 DLITWNTIISGLAMHGRGAGALSLFHEMKNAGEMPDG-ITFIGILCACTHMGLVEEGLSYFQSMAMDYSIVPQIEHYGCM 438 (589)
Q Consensus 360 ~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l 438 (589)
++..+..|.....+.|.+++|..+++...+ +.|+. .....++..+.+.+++++|+..+++... .-+-+......+
T Consensus 85 ~~~~~~~La~i~~~~g~~~ea~~~l~~~~~--~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~--~~p~~~~~~~~~ 160 (694)
T PRK15179 85 TELFQVLVARALEAAHRSDEGLAVWRGIHQ--RFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFS--GGSSSAREILLE 160 (694)
T ss_pred cHHHHHHHHHHHHHcCCcHHHHHHHHHHHh--hCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhh--cCCCCHHHHHHH
Confidence 355566666666666666666666666666 34533 3445555666666666666666666653 222234455556
Q ss_pred HHHHHhcCCHHHHHHHHhhCC-CCCC-HHHHHHHHHHHhcCCCHHHHHHHHHHHHccCC
Q 007808 439 VDLLARAGRLAEAVDFVKRMP-IEAD-AVIWANLLGSCRVYKNVELAELALERLTELEP 495 (589)
Q Consensus 439 ~~~~~~~g~~~~A~~~~~~~~-~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p 495 (589)
..++.+.|++++|..+|+++. ..|+ ...+..+..++...|+.++|...|+++++...
T Consensus 161 a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~ 219 (694)
T PRK15179 161 AKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIG 219 (694)
T ss_pred HHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhC
Confidence 666666666666666666662 2332 45566666666666666666666666666443
No 121
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.69 E-value=3.8e-07 Score=74.94 Aligned_cols=94 Identities=19% Similarity=0.292 Sum_probs=75.9
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHhhC-CCCC-CHHHHHHHHHHHhcCCCHHHHHHHHHHHHccCCCCCcchHHHHHHHh
Q 007808 432 IEHYGCMVDLLARAGRLAEAVDFVKRM-PIEA-DAVIWANLLGSCRVYKNVELAELALERLTELEPKNPANFVMLSNIYG 509 (589)
Q Consensus 432 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 509 (589)
......++..+...|++++|.+.++++ ...| +...+..+...+...|++++|...++++++.+|+++..+..++.+|.
T Consensus 17 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~ 96 (135)
T TIGR02552 17 LEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHAAECLL 96 (135)
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHH
Confidence 344556777788888888888888876 3344 56667777788888888999999999888888888888888999999
Q ss_pred hcCChHHHHHHHHHhh
Q 007808 510 DLGRWKDVARIKVAMR 525 (589)
Q Consensus 510 ~~g~~~~A~~~~~~~~ 525 (589)
..|++++|...+++..
T Consensus 97 ~~g~~~~A~~~~~~al 112 (135)
T TIGR02552 97 ALGEPESALKALDLAI 112 (135)
T ss_pred HcCCHHHHHHHHHHHH
Confidence 9999999999888875
No 122
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=98.67 E-value=5e-07 Score=72.86 Aligned_cols=94 Identities=15% Similarity=0.088 Sum_probs=83.4
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHhhC-CCCC-CHHHHHHHHHHHhcCCCHHHHHHHHHHHHccCCCCCcchHHHHHHHh
Q 007808 432 IEHYGCMVDLLARAGRLAEAVDFVKRM-PIEA-DAVIWANLLGSCRVYKNVELAELALERLTELEPKNPANFVMLSNIYG 509 (589)
Q Consensus 432 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 509 (589)
....-.+...+...|++++|.++|+-+ .+.| +..-|..|..++...|++++|+..|.++..++|++|.++..++.++.
T Consensus 35 l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~L 114 (157)
T PRK15363 35 LNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECYL 114 (157)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHH
Confidence 344445677788999999999999988 4566 56778888899999999999999999999999999999999999999
Q ss_pred hcCChHHHHHHHHHhh
Q 007808 510 DLGRWKDVARIKVAMR 525 (589)
Q Consensus 510 ~~g~~~~A~~~~~~~~ 525 (589)
..|+.+.|.+.|+...
T Consensus 115 ~lG~~~~A~~aF~~Ai 130 (157)
T PRK15363 115 ACDNVCYAIKALKAVV 130 (157)
T ss_pred HcCCHHHHHHHHHHHH
Confidence 9999999999999885
No 123
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.64 E-value=9.6e-06 Score=70.35 Aligned_cols=243 Identities=13% Similarity=0.076 Sum_probs=154.6
Q ss_pred HHHHHhCCChHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCC
Q 007808 266 IGGYANNGLFFEVLDAFKRMLTEGRVFPNDATIVTVLSACARLGALDFSKWVHVYAEYNGYQGNVCVGNALIDMYAKCGI 345 (589)
Q Consensus 266 ~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 345 (589)
++-+.-.|.+..++..-...... +-+...-.-+.++|...|.......- +.. +-.|.......+.......++
T Consensus 15 iRn~fY~Gnyq~~ine~~~~~~~---~~~~e~d~y~~raylAlg~~~~~~~e---I~~-~~~~~lqAvr~~a~~~~~e~~ 87 (299)
T KOG3081|consen 15 IRNYFYLGNYQQCINEAEKFSSS---KTDVELDVYMYRAYLALGQYQIVISE---IKE-GKATPLQAVRLLAEYLELESN 87 (299)
T ss_pred HHHHHHhhHHHHHHHHHHhhccc---cchhHHHHHHHHHHHHcccccccccc---ccc-ccCChHHHHHHHHHHhhCcch
Confidence 55667778888877665554332 23444455566667766665433221 111 113333344434443333444
Q ss_pred hHHHHH-HHhhCCCC----CcchHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCcHHHHHHHHH
Q 007808 346 IENAVD-VFNSMDTK----DLITWNTIISGLAMHGRGAGALSLFHEMKNAGEMPDGITFIGILCACTHMGLVEEGLSYFQ 420 (589)
Q Consensus 346 ~~~A~~-~~~~~~~~----~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 420 (589)
.++-.. +.+.+..+ +......-...|+..|++++|++.+.... +......=+..+.+..+.+-|.+.++
T Consensus 88 ~~~~~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~------~lE~~Al~VqI~lk~~r~d~A~~~lk 161 (299)
T KOG3081|consen 88 KKSILASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGE------NLEAAALNVQILLKMHRFDLAEKELK 161 (299)
T ss_pred hHHHHHHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccc------hHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333332 33333322 22223333456888999999998887621 22222223344567788899999999
Q ss_pred HhHHhcCCCCChHHHHHHHHHHHh----cCCHHHHHHHHhhC--CCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHccC
Q 007808 421 SMAMDYSIVPQIEHYGCMVDLLAR----AGRLAEAVDFVKRM--PIEADAVIWANLLGSCRVYKNVELAELALERLTELE 494 (589)
Q Consensus 421 ~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 494 (589)
+|.. + .+..+.+.|..++.+ .++..+|.-+|+++ +..|+..+.+....++...|++++|+.+++.++..+
T Consensus 162 ~mq~---i-ded~tLtQLA~awv~la~ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd 237 (299)
T KOG3081|consen 162 KMQQ---I-DEDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKD 237 (299)
T ss_pred HHHc---c-chHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhcc
Confidence 8853 1 445566666665543 45788999999999 367888888888888999999999999999999999
Q ss_pred CCCCcchHHHHHHHhhcCChHHHH-HHHHHhh
Q 007808 495 PKNPANFVMLSNIYGDLGRWKDVA-RIKVAMR 525 (589)
Q Consensus 495 p~~~~~~~~l~~~~~~~g~~~~A~-~~~~~~~ 525 (589)
|++|+++.+++.+-.-.|+-.++. +.+..++
T Consensus 238 ~~dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk 269 (299)
T KOG3081|consen 238 AKDPETLANLIVLALHLGKDAEVTERNLSQLK 269 (299)
T ss_pred CCCHHHHHHHHHHHHHhCCChHHHHHHHHHHH
Confidence 999999999988888888776654 4566665
No 124
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.64 E-value=8.9e-06 Score=85.01 Aligned_cols=240 Identities=11% Similarity=0.105 Sum_probs=128.3
Q ss_pred CchhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCcHHHHH-HHHHHHHhcCChhHHHHHHHHHHHcCCCCChhHHHHH
Q 007808 258 NVFSWNGLIGGYANNGLFFEVLDAFKRMLTEGRVFPNDATIV-TVLSACARLGALDFSKWVHVYAEYNGYQGNVCVGNAL 336 (589)
Q Consensus 258 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~-~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 336 (589)
+...|..|+..+...+++++|.++.+...+.. |+...+. .+...+.+.++...+..+ .+
T Consensus 30 n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~---P~~i~~yy~~G~l~~q~~~~~~~~lv-----------------~~ 89 (906)
T PRK14720 30 KFKELDDLIDAYKSENLTDEAKDICEEHLKEH---KKSISALYISGILSLSRRPLNDSNLL-----------------NL 89 (906)
T ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC---CcceehHHHHHHHHHhhcchhhhhhh-----------------hh
Confidence 44567777777777778888887777666643 4443322 222234444443333222 12
Q ss_pred HHHHHhcCChHHHHHHHhhCCC--CCcchHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCcHHH
Q 007808 337 IDMYAKCGIIENAVDVFNSMDT--KDLITWNTIISGLAMHGRGAGALSLFHEMKNAGEMPDGITFIGILCACTHMGLVEE 414 (589)
Q Consensus 337 ~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~ 414 (589)
++......++.-...+...+.. .+...+..++.+|-+.|+.++|..+|+++.+.. +-|....+.+.-.|+.. ++++
T Consensus 90 l~~~~~~~~~~~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~K 167 (906)
T PRK14720 90 IDSFSQNLKWAIVEHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKEK 167 (906)
T ss_pred hhhcccccchhHHHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHHH
Confidence 2222222233222222222221 122345556666666666666666666666643 22455556666666555 6666
Q ss_pred HHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHhhC-CCCCCH-HHHHHHHHHHhcCCCHHHHHHHHHHHHc
Q 007808 415 GLSYFQSMAMDYSIVPQIEHYGCMVDLLARAGRLAEAVDFVKRM-PIEADA-VIWANLLGSCRVYKNVELAELALERLTE 492 (589)
Q Consensus 415 A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 492 (589)
|.+++.+++.. |...+++.++.++|+++ ...|+. ..+..+......+-...++
T Consensus 168 A~~m~~KAV~~----------------~i~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~--------- 222 (906)
T PRK14720 168 AITYLKKAIYR----------------FIKKKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHREFTRL--------- 222 (906)
T ss_pred HHHHHHHHHHH----------------HHhhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHhhhccchh---------
Confidence 66665555421 44455566666666655 233322 2222222211111111111
Q ss_pred cCCCCCcchHHHHHHHhhcCChHHHHHHHHHhhhCCCccCCccceeeeCCeeeeeccccCCCchHHHHHHHHHHHHcccC
Q 007808 493 LEPKNPANFVMLSNIYGDLGRWKDVARIKVAMRDTGFKKLPGCSSIEVNEVVMLGCLSRELDRKSIVRAEANMIKLLPQN 572 (589)
Q Consensus 493 ~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~ 572 (589)
...+..+-..|...++|++++.+++.+. +.+|.|..+...|+.-|. +++
T Consensus 223 -----~~~~~~l~~~y~~~~~~~~~i~iLK~iL------------------------~~~~~n~~a~~~l~~~y~--~kY 271 (906)
T PRK14720 223 -----VGLLEDLYEPYKALEDWDEVIYILKKIL------------------------EHDNKNNKAREELIRFYK--EKY 271 (906)
T ss_pred -----HHHHHHHHHHHhhhhhhhHHHHHHHHHH------------------------hcCCcchhhHHHHHHHHH--HHc
Confidence 2234445567778889999999999996 788889999998988886 555
Q ss_pred CCC
Q 007808 573 NHP 575 (589)
Q Consensus 573 ~~~ 575 (589)
..+
T Consensus 272 ~~~ 274 (906)
T PRK14720 272 KDH 274 (906)
T ss_pred cCc
Confidence 553
No 125
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=98.63 E-value=1.3e-07 Score=76.13 Aligned_cols=94 Identities=10% Similarity=-0.051 Sum_probs=84.6
Q ss_pred CHHHHHHHHHHHhcCCCHHHHHHHHHHHHccCCCCCcchHHHHHHHhhcCChHHHHHHHHHhhhCCCccCCccceeeeCC
Q 007808 463 DAVIWANLLGSCRVYKNVELAELALERLTELEPKNPANFVMLSNIYGDLGRWKDVARIKVAMRDTGFKKLPGCSSIEVNE 542 (589)
Q Consensus 463 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 542 (589)
+....-.+...+...|++++|+.+|+-+..++|.+...|..|+-++...|++++|+..|.+..
T Consensus 34 ~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~----------------- 96 (157)
T PRK15363 34 PLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAA----------------- 96 (157)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHH-----------------
Confidence 444555666778899999999999999999999999999999999999999999999999985
Q ss_pred eeeeeccccCCCchHHHHHHHHHHHHcccCCCCcchHh
Q 007808 543 VVMLGCLSRELDRKSIVRAEANMIKLLPQNNHPLTFIV 580 (589)
Q Consensus 543 ~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~ 580 (589)
.++|++|.++.++|..|..+|+.+.|..-..
T Consensus 97 -------~L~~ddp~~~~~ag~c~L~lG~~~~A~~aF~ 127 (157)
T PRK15363 97 -------QIKIDAPQAPWAAAECYLACDNVCYAIKALK 127 (157)
T ss_pred -------hcCCCCchHHHHHHHHHHHcCCHHHHHHHHH
Confidence 7999999999999999999999988766544
No 126
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.63 E-value=2.2e-06 Score=84.46 Aligned_cols=214 Identities=14% Similarity=-0.002 Sum_probs=168.9
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHhhCC--CCCcchHHHHHHHHHhC
Q 007808 297 TIVTVLSACARLGALDFSKWVHVYAEYNGYQGNVCVGNALIDMYAKCGIIENAVDVFNSMD--TKDLITWNTIISGLAMH 374 (589)
Q Consensus 297 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~l~~~~~~~ 374 (589)
.-..+...+.+.|-...|..++++.. .+..++.+|+..|+..+|..+..+.. +|++..|..+++.....
T Consensus 400 ~q~~laell~slGitksAl~I~Erle---------mw~~vi~CY~~lg~~~kaeei~~q~lek~~d~~lyc~LGDv~~d~ 470 (777)
T KOG1128|consen 400 LQRLLAELLLSLGITKSALVIFERLE---------MWDPVILCYLLLGQHGKAEEINRQELEKDPDPRLYCLLGDVLHDP 470 (777)
T ss_pred HHHHHHHHHHHcchHHHHHHHHHhHH---------HHHHHHHHHHHhcccchHHHHHHHHhcCCCcchhHHHhhhhccCh
Confidence 33455667778888888888887664 45668889999999999988877655 46778888888888777
Q ss_pred CChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHH
Q 007808 375 GRGAGALSLFHEMKNAGEMPDGITFIGILCACTHMGLVEEGLSYFQSMAMDYSIVPQIEHYGCMVDLLARAGRLAEAVDF 454 (589)
Q Consensus 375 ~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 454 (589)
.-+++|.++.+..... .-..+.....+.++++++.+.|+...+-. +....+|-.+.-+..+.+++..|.+.
T Consensus 471 s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~n--plq~~~wf~~G~~ALqlek~q~av~a 541 (777)
T KOG1128|consen 471 SLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEIN--PLQLGTWFGLGCAALQLEKEQAAVKA 541 (777)
T ss_pred HHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcC--ccchhHHHhccHHHHHHhhhHHHHHH
Confidence 7888888888765432 11122222334789999999998776432 23456788888889999999999999
Q ss_pred HhhC-CCCCC-HHHHHHHHHHHhcCCCHHHHHHHHHHHHccCCCCCcchHHHHHHHhhcCChHHHHHHHHHhhhCC
Q 007808 455 VKRM-PIEAD-AVIWANLLGSCRVYKNVELAELALERLTELEPKNPANFVMLSNIYGDLGRWKDVARIKVAMRDTG 528 (589)
Q Consensus 455 ~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 528 (589)
|... ...|| ...||++-.+|.+.|+-.+|...++++++.+-.+...+.+..-+..+.|.|++|.+.+.++.+..
T Consensus 542 F~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~w~iWENymlvsvdvge~eda~~A~~rll~~~ 617 (777)
T KOG1128|consen 542 FHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDLR 617 (777)
T ss_pred HHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCCCeeeechhhhhhhcccHHHHHHHHHHHHHhh
Confidence 8877 56775 57799999999999999999999999999888889999999999999999999999999986433
No 127
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.60 E-value=5.2e-06 Score=72.09 Aligned_cols=160 Identities=19% Similarity=0.142 Sum_probs=125.3
Q ss_pred CcchHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHH
Q 007808 360 DLITWNTIISGLAMHGRGAGALSLFHEMKNAGEMPDGITFIGILCACTHMGLVEEGLSYFQSMAMDYSIVPQIEHYGCMV 439 (589)
Q Consensus 360 ~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~ 439 (589)
|... ..+-..+...|+-+....+....... ..-|......++....+.|++..|...+.+... .-++|...|+.+.
T Consensus 66 d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~-~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~--l~p~d~~~~~~lg 141 (257)
T COG5010 66 DLSI-AKLATALYLRGDADSSLAVLQKSAIA-YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAAR--LAPTDWEAWNLLG 141 (257)
T ss_pred hHHH-HHHHHHHHhcccccchHHHHhhhhcc-CcccHHHHHHHHHHHHHhcchHHHHHHHHHHhc--cCCCChhhhhHHH
Confidence 3344 55566777788888888877775542 122444455577888888999999999988865 5677888999999
Q ss_pred HHHHhcCCHHHHHHHHhhC-CCCC-CHHHHHHHHHHHhcCCCHHHHHHHHHHHHccCCCCCcchHHHHHHHhhcCChHHH
Q 007808 440 DLLARAGRLAEAVDFVKRM-PIEA-DAVIWANLLGSCRVYKNVELAELALERLTELEPKNPANFVMLSNIYGDLGRWKDV 517 (589)
Q Consensus 440 ~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A 517 (589)
-+|.+.|++++|..-|.+. .+.| ++...+.+...+.-.|+.+.|+.++.++....+.++.+..+|+.+....|++++|
T Consensus 142 aaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A 221 (257)
T COG5010 142 AALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFREA 221 (257)
T ss_pred HHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHH
Confidence 9999999999998888877 3444 5566788888888899999999999999988888889999999999999999999
Q ss_pred HHHHHH
Q 007808 518 ARIKVA 523 (589)
Q Consensus 518 ~~~~~~ 523 (589)
..+...
T Consensus 222 ~~i~~~ 227 (257)
T COG5010 222 EDIAVQ 227 (257)
T ss_pred Hhhccc
Confidence 887443
No 128
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.56 E-value=6.6e-05 Score=71.17 Aligned_cols=176 Identities=15% Similarity=0.113 Sum_probs=113.2
Q ss_pred ChHHHHHHHhhCCC------CCcchHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCcHHHHHHH
Q 007808 345 IIENAVDVFNSMDT------KDLITWNTIISGLAMHGRGAGALSLFHEMKNAGEMPDGITFIGILCACTHMGLVEEGLSY 418 (589)
Q Consensus 345 ~~~~A~~~~~~~~~------~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~ 418 (589)
++.++...-+.++. ++...+...+.+.........+..++-+..+. .-...-|..- ..+...|++++|+..
T Consensus 252 RIa~lr~ra~q~p~~~~~d~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~--~~~aa~YG~A-~~~~~~~~~d~A~~~ 328 (484)
T COG4783 252 RIADLRNRAEQSPPYNKLDSPDFQLARARIRAKYEALPNQQAADLLAKRSKR--GGLAAQYGRA-LQTYLAGQYDEALKL 328 (484)
T ss_pred HHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHhccccccchHHHHHHHhCc--cchHHHHHHH-HHHHHhcccchHHHH
Confidence 44555555555553 24444555555444333323333332222221 1112223333 334566888888888
Q ss_pred HHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHhhC-CCCCC-HHHHHHHHHHHhcCCCHHHHHHHHHHHHccCCC
Q 007808 419 FQSMAMDYSIVPQIEHYGCMVDLLARAGRLAEAVDFVKRM-PIEAD-AVIWANLLGSCRVYKNVELAELALERLTELEPK 496 (589)
Q Consensus 419 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 496 (589)
++.++. ..+.|+..+....+.+.+.++.++|.+.++++ ...|+ ...+-.+..++.+.|++.+|+..++.....+|+
T Consensus 329 l~~L~~--~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all~~g~~~eai~~L~~~~~~~p~ 406 (484)
T COG4783 329 LQPLIA--AQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQALLKGGKPQEAIRILNRYLFNDPE 406 (484)
T ss_pred HHHHHH--hCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCC
Confidence 888765 33445666667778888888888888888887 45666 455566668888888888888888888888888
Q ss_pred CCcchHHHHHHHhhcCChHHHHHHHHHhh
Q 007808 497 NPANFVMLSNIYGDLGRWKDVARIKVAMR 525 (589)
Q Consensus 497 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 525 (589)
++..|..|+..|...|+-.+|.....+..
T Consensus 407 dp~~w~~LAqay~~~g~~~~a~~A~AE~~ 435 (484)
T COG4783 407 DPNGWDLLAQAYAELGNRAEALLARAEGY 435 (484)
T ss_pred CchHHHHHHHHHHHhCchHHHHHHHHHHH
Confidence 88888888888888888777777666553
No 129
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.56 E-value=1.7e-06 Score=81.63 Aligned_cols=118 Identities=14% Similarity=0.035 Sum_probs=102.0
Q ss_pred HHHHHHHhcCCHHHHHHHHhhC-CCCCCHHH-HHHHHHHHhcCCCHHHHHHHHHHHHccCCCCCcchHHHHHHHhhcCCh
Q 007808 437 CMVDLLARAGRLAEAVDFVKRM-PIEADAVI-WANLLGSCRVYKNVELAELALERLTELEPKNPANFVMLSNIYGDLGRW 514 (589)
Q Consensus 437 ~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~-~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 514 (589)
.....+...|.+++|+..++.+ ...|+... +......+.+.++.++|.+.+++++.++|+.+....+++++|.+.|+.
T Consensus 311 G~A~~~~~~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all~~g~~ 390 (484)
T COG4783 311 GRALQTYLAGQYDEALKLLQPLIAAQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQALLKGGKP 390 (484)
T ss_pred HHHHHHHHhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHhcCCh
Confidence 3445566899999999999988 44565544 455558899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhCCCccCCccceeeeCCeeeeeccccCCCchHHHHHHHHHHHHcccCCCCcch
Q 007808 515 KDVARIKVAMRDTGFKKLPGCSSIEVNEVVMLGCLSRELDRKSIVRAEANMIKLLPQNNHPLTF 578 (589)
Q Consensus 515 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~ 578 (589)
.+|+.++++.. ..+|++|..|..|+..|.+.|+.+++...
T Consensus 391 ~eai~~L~~~~------------------------~~~p~dp~~w~~LAqay~~~g~~~~a~~A 430 (484)
T COG4783 391 QEAIRILNRYL------------------------FNDPEDPNGWDLLAQAYAELGNRAEALLA 430 (484)
T ss_pred HHHHHHHHHHh------------------------hcCCCCchHHHHHHHHHHHhCchHHHHHH
Confidence 99999999885 67899999999999999999999886543
No 130
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.55 E-value=1e-05 Score=69.64 Aligned_cols=179 Identities=16% Similarity=0.173 Sum_probs=121.5
Q ss_pred cCChHHHHHHHhhCCC--------CCc-chHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHhHH-HHHHHHHhccCcH
Q 007808 343 CGIIENAVDVFNSMDT--------KDL-ITWNTIISGLAMHGRGAGALSLFHEMKNAGEMPDGITF-IGILCACTHMGLV 412 (589)
Q Consensus 343 ~g~~~~A~~~~~~~~~--------~~~-~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~-~~l~~~~~~~g~~ 412 (589)
..+.++..+++..+.. ++. ..|..++-+....|+.+-|..+++++... + |...-. ..-..-+...|++
T Consensus 25 ~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~-f-p~S~RV~~lkam~lEa~~~~ 102 (289)
T KOG3060|consen 25 VRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDR-F-PGSKRVGKLKAMLLEATGNY 102 (289)
T ss_pred ccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHh-C-CCChhHHHHHHHHHHHhhch
Confidence 4567777777776651 122 23444555566778888888888888775 3 433322 2222334556888
Q ss_pred HHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHhhC--CCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHH
Q 007808 413 EEGLSYFQSMAMDYSIVPQIEHYGCMVDLLARAGRLAEAVDFVKRM--PIEADAVIWANLLGSCRVYKNVELAELALERL 490 (589)
Q Consensus 413 ~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 490 (589)
++|.++++.++.+ -+-|..++..-+.+.-..|+.-+|++-+.+. .+..|...|.-+...|...|++++|.-.++++
T Consensus 103 ~~A~e~y~~lL~d--dpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ 180 (289)
T KOG3060|consen 103 KEAIEYYESLLED--DPTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEEL 180 (289)
T ss_pred hhHHHHHHHHhcc--CcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHH
Confidence 8888888888763 2445666666666666777777777766665 35567888888888888888888888888888
Q ss_pred HccCCCCCcchHHHHHHHhhcC---ChHHHHHHHHHhh
Q 007808 491 TELEPKNPANFVMLSNIYGDLG---RWKDVARIKVAMR 525 (589)
Q Consensus 491 ~~~~p~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~ 525 (589)
+=+.|.++..+..+++++.-.| +.+-|.++|.+..
T Consensus 181 ll~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~al 218 (289)
T KOG3060|consen 181 LLIQPFNPLYFQRLAEVLYTQGGAENLELARKYYERAL 218 (289)
T ss_pred HHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 8888888888888888876655 3555666776664
No 131
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=98.54 E-value=1.4e-07 Score=66.63 Aligned_cols=67 Identities=16% Similarity=0.241 Sum_probs=61.2
Q ss_pred hcCCCHHHHHHHHHHHHccCCCCCcchHHHHHHHhhcCChHHHHHHHHHhhhCCCccCCccceeeeCCeeeeeccccCCC
Q 007808 475 RVYKNVELAELALERLTELEPKNPANFVMLSNIYGDLGRWKDVARIKVAMRDTGFKKLPGCSSIEVNEVVMLGCLSRELD 554 (589)
Q Consensus 475 ~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 554 (589)
.+.|++++|++.|+++++.+|+++.++..++.+|.+.|++++|.++++++. ..+|+
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~------------------------~~~~~ 57 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLL------------------------KQDPD 57 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCH------------------------GGGTT
T ss_pred hhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH------------------------HHCcC
Confidence 468999999999999999999999999999999999999999999999986 78899
Q ss_pred chHHHHHHHHH
Q 007808 555 RKSIVRAEANM 565 (589)
Q Consensus 555 ~~~~~~~l~~~ 565 (589)
++.++..++.+
T Consensus 58 ~~~~~~l~a~i 68 (68)
T PF14559_consen 58 NPEYQQLLAQI 68 (68)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHhcC
Confidence 99998888764
No 132
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.54 E-value=7.5e-05 Score=64.96 Aligned_cols=246 Identities=15% Similarity=0.083 Sum_probs=145.9
Q ss_pred cCCHHHHHHHHhhCCC--CCchhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHhcCChhHH-HHH
Q 007808 241 NGDVEECKRLFEEMPE--RNVFSWNGLIGGYANNGLFFEVLDAFKRMLTEGRVFPNDATIVTVLSACARLGALDFS-KWV 317 (589)
Q Consensus 241 ~~~~~~A~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a-~~~ 317 (589)
.|.+..++..-..... .+...-..+.++|...|.+...+.-. . .+ -.|....+..+.......++.+.- .++
T Consensus 21 ~Gnyq~~ine~~~~~~~~~~~e~d~y~~raylAlg~~~~~~~eI---~-~~-~~~~lqAvr~~a~~~~~e~~~~~~~~~l 95 (299)
T KOG3081|consen 21 LGNYQQCINEAEKFSSSKTDVELDVYMYRAYLALGQYQIVISEI---K-EG-KATPLQAVRLLAEYLELESNKKSILASL 95 (299)
T ss_pred hhHHHHHHHHHHhhccccchhHHHHHHHHHHHHccccccccccc---c-cc-cCChHHHHHHHHHHhhCcchhHHHHHHH
Confidence 4555555444433332 22333334455666666654433211 1 11 123333333333333333333322 334
Q ss_pred HHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHhhCCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHh
Q 007808 318 HVYAEYNGYQGNVCVGNALIDMYAKCGIIENAVDVFNSMDTKDLITWNTIISGLAMHGRGAGALSLFHEMKNAGEMPDGI 397 (589)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~ 397 (589)
.+.+.......+......-...|...|++++|++...... +....-.=+..+.+..+.+-|.+.+++|.+ -.+..
T Consensus 96 ~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~--~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~---ided~ 170 (299)
T KOG3081|consen 96 YELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGE--NLEAAALNVQILLKMHRFDLAEKELKKMQQ---IDEDA 170 (299)
T ss_pred HHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccc--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHc---cchHH
Confidence 4444444444443444444556788888888888887733 333333334556677788888889998887 23556
Q ss_pred HHHHHHHHHhc----cCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHhhC--CCCCCHHHHHHHH
Q 007808 398 TFIGILCACTH----MGLVEEGLSYFQSMAMDYSIVPQIEHYGCMVDLLARAGRLAEAVDFVKRM--PIEADAVIWANLL 471 (589)
Q Consensus 398 ~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l~ 471 (589)
|.+.|..++.+ .+.+.+|.-+|+++.. ...|+..+.+....++...|++++|..+++.+ ....++.+...++
T Consensus 171 tLtQLA~awv~la~ggek~qdAfyifeE~s~--k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nli 248 (299)
T KOG3081|consen 171 TLTQLAQAWVKLATGGEKIQDAFYIFEELSE--KTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANLI 248 (299)
T ss_pred HHHHHHHHHHHHhccchhhhhHHHHHHHHhc--ccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHH
Confidence 77767666543 3568888999999965 46788888888888888999999999998887 3334566666666
Q ss_pred HHHhcCCC-HHHHHHHHHHHHccCCCCC
Q 007808 472 GSCRVYKN-VELAELALERLTELEPKNP 498 (589)
Q Consensus 472 ~~~~~~g~-~~~A~~~~~~~~~~~p~~~ 498 (589)
.+-...|. .+--.+...+.....|.++
T Consensus 249 v~a~~~Gkd~~~~~r~l~QLk~~~p~h~ 276 (299)
T KOG3081|consen 249 VLALHLGKDAEVTERNLSQLKLSHPEHP 276 (299)
T ss_pred HHHHHhCCChHHHHHHHHHHHhcCCcch
Confidence 54444554 4555667777777888755
No 133
>PF12854 PPR_1: PPR repeat
Probab=98.52 E-value=1.2e-07 Score=55.32 Aligned_cols=32 Identities=25% Similarity=0.557 Sum_probs=21.6
Q ss_pred CCCCchHHHhHHHHHHHcCCChHHHHHHHccC
Q 007808 130 GFRANIFVGTALIELYSTGKAIEAAYKVFGEM 161 (589)
Q Consensus 130 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 161 (589)
|+.||..+|++||++|++.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 56666666666666666666666666666665
No 134
>PF12854 PPR_1: PPR repeat
Probab=98.51 E-value=1e-07 Score=55.67 Aligned_cols=34 Identities=18% Similarity=0.260 Sum_probs=27.8
Q ss_pred hCCCCCccchHHHHHHHHccCChhHHHHHhhcCC
Q 007808 28 SGLEKSDYITPRIITACAQLKQMTYARKMFDKIT 61 (589)
Q Consensus 28 ~g~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 61 (589)
.|+.||..+|+.+|++|++.|++++|.++|++|+
T Consensus 1 ~G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 1 RGCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 3778888888888888888888888888888774
No 135
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.51 E-value=2.2e-05 Score=83.00 Aligned_cols=220 Identities=17% Similarity=0.104 Sum_probs=169.0
Q ss_pred ChhHHHHHHHHHhcCCChHHHHHHhcccCC--------CChhhHHHHHHHHHhcCCHHHHHHHHhhCCCC--CchhHHHH
Q 007808 196 DVILWNTIVSGYIDVRNMIEARKLFDQMPK--------KDVISWNTMLSGYANNGDVEECKRLFEEMPER--NVFSWNGL 265 (589)
Q Consensus 196 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--------~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~l 265 (589)
+...|-..|......++.++|.++.+++++ .-...|.++++.-..-|.-+...++|+++.+- ....|..|
T Consensus 1457 SSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqycd~~~V~~~L 1536 (1710)
T KOG1070|consen 1457 SSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYCDAYTVHLKL 1536 (1710)
T ss_pred cchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhcchHHHHHHH
Confidence 456788888888888999999888888874 22356777887777778888899999998872 34568888
Q ss_pred HHHHHhCCChHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCC-CChhHHHHHHHHHHhcC
Q 007808 266 IGGYANNGLFFEVLDAFKRMLTEGRVFPNDATIVTVLSACARLGALDFSKWVHVYAEYNGYQ-GNVCVGNALIDMYAKCG 344 (589)
Q Consensus 266 ~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g 344 (589)
...|.+.+.+++|.++|+.|.+.- .-....|...+..+.+.++-+.|..++.++.+.-.. .........++.-.+.|
T Consensus 1537 ~~iy~k~ek~~~A~ell~~m~KKF--~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~G 1614 (1710)
T KOG1070|consen 1537 LGIYEKSEKNDEADELLRLMLKKF--GQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFKYG 1614 (1710)
T ss_pred HHHHHHhhcchhHHHHHHHHHHHh--cchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhcC
Confidence 999999999999999999998873 456678888888889988889999999888875311 14455566677777889
Q ss_pred ChHHHHHHHhhCCC---CCcchHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCH--hHHHHHHHHHhccCcHHHHHH
Q 007808 345 IIENAVDVFNSMDT---KDLITWNTIISGLAMHGRGAGALSLFHEMKNAGEMPDG--ITFIGILCACTHMGLVEEGLS 417 (589)
Q Consensus 345 ~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~--~~~~~l~~~~~~~g~~~~A~~ 417 (589)
+.+.+..+|+.... .....|+..+..-.++|+.+.+..+|++....++.|-. +.|...+..-.+.|+-+.++.
T Consensus 1615 DaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gde~~vE~ 1692 (1710)
T KOG1070|consen 1615 DAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHGDEKNVEY 1692 (1710)
T ss_pred CchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcCchhhHHH
Confidence 99999999987763 35678999999999999999999999999998887743 345555554445555444333
No 136
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.47 E-value=0.0014 Score=63.06 Aligned_cols=79 Identities=10% Similarity=0.110 Sum_probs=59.7
Q ss_pred CCCCccchHHHHHHHHccCChhHHHHHhhcCCC--C-CcccHHHHHHHHHcCCChhHHHHHHHHhhhCCCCCCcccHHHH
Q 007808 30 LEKSDYITPRIITACAQLKQMTYARKMFDKITD--Q-NVVSWNAMFNGYAQNEFHRTVVVLFTQMKKLDAMPNCFTFPIV 106 (589)
Q Consensus 30 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~-~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l 106 (589)
.+.|...|+.||+-+... ..+++++.++++.. | ....|..-|..-...++++....+|.+.... ..+...|..-
T Consensus 16 nP~di~sw~~lire~qt~-~~~~~R~~YEq~~~~FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvk--vLnlDLW~lY 92 (656)
T KOG1914|consen 16 NPYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNVFPSSPRAWKLYIERELASKDFESVEKLFSRCLVK--VLNLDLWKLY 92 (656)
T ss_pred CCccHHHHHHHHHHHccC-CHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH--HhhHhHHHHH
Confidence 367788888888877655 88999999988876 3 4457888888888888999999999888765 3456666666
Q ss_pred HHHHh
Q 007808 107 LKSCV 111 (589)
Q Consensus 107 l~~~~ 111 (589)
+....
T Consensus 93 l~YVR 97 (656)
T KOG1914|consen 93 LSYVR 97 (656)
T ss_pred HHHHH
Confidence 65443
No 137
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=98.46 E-value=2.2e-06 Score=82.47 Aligned_cols=109 Identities=12% Similarity=0.080 Sum_probs=88.9
Q ss_pred HHHHHhcCCHHHHHHHHhhC-CCCC-CHHHHHHHHHHHhcCCCHHHHHHHHHHHHccCCCCCcchHHHHHHHhhcCChHH
Q 007808 439 VDLLARAGRLAEAVDFVKRM-PIEA-DAVIWANLLGSCRVYKNVELAELALERLTELEPKNPANFVMLSNIYGDLGRWKD 516 (589)
Q Consensus 439 ~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 516 (589)
...+...|++++|++.|+++ ...| +...|..+..+|...|++++|+..++++++++|+++.+|..++.+|...|++++
T Consensus 9 a~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~~~e 88 (356)
T PLN03088 9 AKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEYQT 88 (356)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCCHHH
Confidence 45566788888888888887 3445 456677777888888999999999999999999888889999999999999999
Q ss_pred HHHHHHHhhhCCCccCCccceeeeCCeeeeeccccCCCchHHHHHHHHHHHHccc
Q 007808 517 VARIKVAMRDTGFKKLPGCSSIEVNEVVMLGCLSRELDRKSIVRAEANMIKLLPQ 571 (589)
Q Consensus 517 A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 571 (589)
|+..+++.. +++|+++.+...++.+...+.+
T Consensus 89 A~~~~~~al------------------------~l~P~~~~~~~~l~~~~~kl~~ 119 (356)
T PLN03088 89 AKAALEKGA------------------------SLAPGDSRFTKLIKECDEKIAE 119 (356)
T ss_pred HHHHHHHHH------------------------HhCCCCHHHHHHHHHHHHHHHh
Confidence 999888875 7888888888888888766643
No 138
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=98.44 E-value=3.7e-07 Score=63.68 Aligned_cols=56 Identities=20% Similarity=0.248 Sum_probs=50.3
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHccCCCCCcchHHHHHHHhhcCChHHHHHHHHHhh
Q 007808 470 LLGSCRVYKNVELAELALERLTELEPKNPANFVMLSNIYGDLGRWKDVARIKVAMR 525 (589)
Q Consensus 470 l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 525 (589)
+...+.+.|++++|+..|+++++..|+++.++..++.++...|++++|+..++++.
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~ 58 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERAL 58 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 45677889999999999999999999999999999999999999999999999985
No 139
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.43 E-value=3.1e-06 Score=67.71 Aligned_cols=92 Identities=16% Similarity=0.092 Sum_probs=61.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhhC-CCCCC----HHHHHHHHHHHhcCCCHHHHHHHHHHHHccCCCC---CcchHHHH
Q 007808 434 HYGCMVDLLARAGRLAEAVDFVKRM-PIEAD----AVIWANLLGSCRVYKNVELAELALERLTELEPKN---PANFVMLS 505 (589)
Q Consensus 434 ~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~---~~~~~~l~ 505 (589)
++..++..+.+.|++++|.+.++++ ...|+ ...+..+..++.+.|++++|...+++++...|++ +.++..++
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~ 83 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLG 83 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHH
Confidence 3445566666777777777777666 22332 2344456677777777777777777777776664 34577777
Q ss_pred HHHhhcCChHHHHHHHHHhh
Q 007808 506 NIYGDLGRWKDVARIKVAMR 525 (589)
Q Consensus 506 ~~~~~~g~~~~A~~~~~~~~ 525 (589)
.++...|++++|.+.++++.
T Consensus 84 ~~~~~~~~~~~A~~~~~~~~ 103 (119)
T TIGR02795 84 MSLQELGDKEKAKATLQQVI 103 (119)
T ss_pred HHHHHhCChHHHHHHHHHHH
Confidence 77777777777777777775
No 140
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.42 E-value=2.8e-05 Score=81.44 Aligned_cols=235 Identities=8% Similarity=0.019 Sum_probs=169.5
Q ss_pred CChhhHHHHHHHHHhcCCHHHHHHHHhhCCC--CC-chhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCcHHHHHHHH
Q 007808 226 KDVISWNTMLSGYANNGDVEECKRLFEEMPE--RN-VFSWNGLIGGYANNGLFFEVLDAFKRMLTEGRVFPNDATIVTVL 302 (589)
Q Consensus 226 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~ 302 (589)
.+...+..|+..+...+++++|.++.+...+ |+ ...|-.+...+.+.++..++..+ .+..
T Consensus 29 ~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~--------------- 91 (906)
T PRK14720 29 SKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL--NLID--------------- 91 (906)
T ss_pred chHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh--hhhh---------------
Confidence 4667889999999999999999999997765 43 34555555577788887766655 3333
Q ss_pred HHHHhcCChhHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHhhCCC---CCcchHHHHHHHHHhCCChHH
Q 007808 303 SACARLGALDFSKWVHVYAEYNGYQGNVCVGNALIDMYAKCGIIENAVDVFNSMDT---KDLITWNTIISGLAMHGRGAG 379 (589)
Q Consensus 303 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~ 379 (589)
......++.....+...+.+. ..+...+..+..+|-+.|+.++|..+++++.+ .|+.+.|.+...|... +.++
T Consensus 92 -~~~~~~~~~~ve~~~~~i~~~--~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~-dL~K 167 (906)
T PRK14720 92 -SFSQNLKWAIVEHICDKILLY--GENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE-DKEK 167 (906)
T ss_pred -hcccccchhHHHHHHHHHHhh--hhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-hHHH
Confidence 222333443344444445443 33455788899999999999999999999874 4778899999999999 9999
Q ss_pred HHHHHHHHHHCCCCCCHhHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHhhCC
Q 007808 380 ALSLFHEMKNAGEMPDGITFIGILCACTHMGLVEEGLSYFQSMAMDYSIVPQIEHYGCMVDLLARAGRLAEAVDFVKRMP 459 (589)
Q Consensus 380 A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 459 (589)
|++++.+.... +...+++..+.++|.++.. ..+.+...+..+.+..... .+
T Consensus 168 A~~m~~KAV~~---------------~i~~kq~~~~~e~W~k~~~--~~~~d~d~f~~i~~ki~~~------------~~ 218 (906)
T PRK14720 168 AITYLKKAIYR---------------FIKKKQYVGIEEIWSKLVH--YNSDDFDFFLRIERKVLGH------------RE 218 (906)
T ss_pred HHHHHHHHHHH---------------HHhhhcchHHHHHHHHHHh--cCcccchHHHHHHHHHHhh------------hc
Confidence 99999988764 5566789999999999975 2222333333233222221 11
Q ss_pred CCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHccCCCCCcchHHHHHHHhh
Q 007808 460 IEADAVIWANLLGSCRVYKNVELAELALERLTELEPKNPANFVMLSNIYGD 510 (589)
Q Consensus 460 ~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 510 (589)
..--..++.-+...|...++++++..+++.+++.+|.|..+...++.+|..
T Consensus 219 ~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~n~~a~~~l~~~y~~ 269 (906)
T PRK14720 219 FTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHDNKNNKAREELIRFYKE 269 (906)
T ss_pred cchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCcchhhHHHHHHHHHH
Confidence 122334455566778889999999999999999999999999999999873
No 141
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.42 E-value=3e-05 Score=66.81 Aligned_cols=174 Identities=14% Similarity=0.108 Sum_probs=129.9
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHhhCCCCCcchH---HHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHh
Q 007808 331 CVGNALIDMYAKCGIIENAVDVFNSMDTKDLITW---NTIISGLAMHGRGAGALSLFHEMKNAGEMPDGITFIGILCACT 407 (589)
Q Consensus 331 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~ 407 (589)
.+|..++-+....|+.+.|...++.+...=+.++ ..-...+-..|++++|+++++.+.+.+ +.|..++.-=+...-
T Consensus 53 ~l~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~dd-pt~~v~~KRKlAilk 131 (289)
T KOG3060|consen 53 TLYEQVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDD-PTDTVIRKRKLAILK 131 (289)
T ss_pred HHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhhHHHHHHHHhccC-cchhHHHHHHHHHHH
Confidence 3566677777889999999999998764222222 222233556799999999999999865 446677776666666
Q ss_pred ccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHhhC-CCCC-CHHHHHHHHHHHh---cCCCHHH
Q 007808 408 HMGLVEEGLSYFQSMAMDYSIVPQIEHYGCMVDLLARAGRLAEAVDFVKRM-PIEA-DAVIWANLLGSCR---VYKNVEL 482 (589)
Q Consensus 408 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~---~~g~~~~ 482 (589)
..|+.-+|++-+....+ .+..|...|.-+.+.|...|++++|.-.++++ -+.| ++..+..+...+. ...+.+.
T Consensus 132 a~GK~l~aIk~ln~YL~--~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~ 209 (289)
T KOG3060|consen 132 AQGKNLEAIKELNEYLD--KFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLEL 209 (289)
T ss_pred HcCCcHHHHHHHHHHHH--HhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHH
Confidence 77888899988888876 56788999999999999999999999999998 3556 5555556665543 3347889
Q ss_pred HHHHHHHHHccCCCCCcchHHHHHH
Q 007808 483 AELALERLTELEPKNPANFVMLSNI 507 (589)
Q Consensus 483 A~~~~~~~~~~~p~~~~~~~~l~~~ 507 (589)
|.++|.+++++.|.+...+..+--+
T Consensus 210 arkyy~~alkl~~~~~ral~GI~lc 234 (289)
T KOG3060|consen 210 ARKYYERALKLNPKNLRALFGIYLC 234 (289)
T ss_pred HHHHHHHHHHhChHhHHHHHHHHHH
Confidence 9999999999999655555444333
No 142
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.39 E-value=6.3e-06 Score=78.82 Aligned_cols=122 Identities=14% Similarity=0.125 Sum_probs=99.2
Q ss_pred HHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHhhC-CCCC-CHHHHHHHHHHHhc
Q 007808 399 FIGILCACTHMGLVEEGLSYFQSMAMDYSIVPQIEHYGCMVDLLARAGRLAEAVDFVKRM-PIEA-DAVIWANLLGSCRV 476 (589)
Q Consensus 399 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~ 476 (589)
...|+..+...++++.|..+++++.+. .|+. ...++..+...++-.+|++++.+. ...| +...+......|.+
T Consensus 172 v~~Ll~~l~~t~~~~~ai~lle~L~~~---~pev--~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~ 246 (395)
T PF09295_consen 172 VDTLLKYLSLTQRYDEAIELLEKLRER---DPEV--AVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLS 246 (395)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHhc---CCcH--HHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Confidence 445666677778899999999888643 3554 445778888888888898888877 3344 55666666677899
Q ss_pred CCCHHHHHHHHHHHHccCCCCCcchHHHHHHHhhcCChHHHHHHHHHhh
Q 007808 477 YKNVELAELALERLTELEPKNPANFVMLSNIYGDLGRWKDVARIKVAMR 525 (589)
Q Consensus 477 ~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 525 (589)
.++++.|+++.+++.++.|++..+|..|+.+|...|++++|+..+..+.
T Consensus 247 k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 247 KKKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred cCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 9999999999999999999999999999999999999999999988875
No 143
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.36 E-value=1.3e-05 Score=65.81 Aligned_cols=113 Identities=15% Similarity=0.072 Sum_probs=87.2
Q ss_pred HHHHHHHCCCCC-CHhHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHhhC-CC
Q 007808 383 LFHEMKNAGEMP-DGITFIGILCACTHMGLVEEGLSYFQSMAMDYSIVPQIEHYGCMVDLLARAGRLAEAVDFVKRM-PI 460 (589)
Q Consensus 383 ~~~~m~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~ 460 (589)
.|++... ..| +......+...+...|++++|.+.++.+... .+.+...+..+...|.+.|++++|...+++. ..
T Consensus 5 ~~~~~l~--~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 80 (135)
T TIGR02552 5 TLKDLLG--LDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAY--DPYNSRYWLGLAACCQMLKEYEEAIDAYALAAAL 80 (135)
T ss_pred hHHHHHc--CChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4555555 345 3345666777788889999999999888652 2346777888889999999999999988887 33
Q ss_pred CC-CHHHHHHHHHHHhcCCCHHHHHHHHHHHHccCCCCCc
Q 007808 461 EA-DAVIWANLLGSCRVYKNVELAELALERLTELEPKNPA 499 (589)
Q Consensus 461 ~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 499 (589)
.| +...+..+...+...|++++|...++++++++|++..
T Consensus 81 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 120 (135)
T TIGR02552 81 DPDDPRPYFHAAECLLALGEPESALKALDLAIEICGENPE 120 (135)
T ss_pred CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccch
Confidence 44 5667777778889999999999999999999998664
No 144
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=98.35 E-value=7.5e-06 Score=70.17 Aligned_cols=82 Identities=22% Similarity=0.155 Sum_probs=64.5
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHhhC-CCCCC----HHHHHHHHHHHhcCCCHHHHHHHHHHHHccCCCCCcchHHHHH
Q 007808 432 IEHYGCMVDLLARAGRLAEAVDFVKRM-PIEAD----AVIWANLLGSCRVYKNVELAELALERLTELEPKNPANFVMLSN 506 (589)
Q Consensus 432 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~ 506 (589)
...+..+...|...|++++|...|+++ ...|+ ...+..+...+.+.|++++|...++++++..|+++..+..++.
T Consensus 35 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~ 114 (172)
T PRK02603 35 AFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAV 114 (172)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHH
Confidence 345666777777888888888888776 22222 3567777788899999999999999999999998888999999
Q ss_pred HHhhcCC
Q 007808 507 IYGDLGR 513 (589)
Q Consensus 507 ~~~~~g~ 513 (589)
++...|+
T Consensus 115 ~~~~~g~ 121 (172)
T PRK02603 115 IYHKRGE 121 (172)
T ss_pred HHHHcCC
Confidence 9988776
No 145
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.27 E-value=0.0079 Score=61.74 Aligned_cols=98 Identities=14% Similarity=0.158 Sum_probs=52.2
Q ss_pred ccCChhHHHHHhhcCCC---CCcccHHHHHHHHHcCCChhHHHHHHHHhhhCCCCCCcccHHHHHHHHhccCChHHHHHH
Q 007808 46 QLKQMTYARKMFDKITD---QNVVSWNAMFNGYAQNEFHRTVVVLFTQMKKLDAMPNCFTFPIVLKSCVKINALREGEEL 122 (589)
Q Consensus 46 ~~~~~~~A~~~~~~~~~---~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~ 122 (589)
|.|+.++|..+++.... .|..+...+-..|...|+.++|..+|++..+. -|+......+..++.|.+++.+-.++
T Consensus 55 r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~~--~P~eell~~lFmayvR~~~yk~qQka 132 (932)
T KOG2053|consen 55 RLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEAVHLYERANQK--YPSEELLYHLFMAYVREKSYKKQQKA 132 (932)
T ss_pred HhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHHHHHHHHHHhh--CCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56666666666655432 24445555666666666666666666666543 35555555566666666655544333
Q ss_pred HHHHHHhCCCCchHHHhHHHHHHH
Q 007808 123 HCLVLKNGFRANIFVGTALIELYS 146 (589)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~li~~~~ 146 (589)
--++.+. .+.+.+.+=++++.+.
T Consensus 133 a~~LyK~-~pk~~yyfWsV~Slil 155 (932)
T KOG2053|consen 133 ALQLYKN-FPKRAYYFWSVISLIL 155 (932)
T ss_pred HHHHHHh-CCcccchHHHHHHHHH
Confidence 3333332 2334444444444443
No 146
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.26 E-value=5.1e-06 Score=66.41 Aligned_cols=98 Identities=11% Similarity=0.083 Sum_probs=83.1
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHccCCCCC---cchHHHHHHHhhcCChHHHHHHHHHhhhCCCccCCccceeeeC
Q 007808 465 VIWANLLGSCRVYKNVELAELALERLTELEPKNP---ANFVMLSNIYGDLGRWKDVARIKVAMRDTGFKKLPGCSSIEVN 541 (589)
Q Consensus 465 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 541 (589)
.++..++..+.+.|++++|...++++++..|+++ .++..++.++.+.|++++|...++++.
T Consensus 3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---------------- 66 (119)
T TIGR02795 3 EAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVV---------------- 66 (119)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHH----------------
Confidence 3456677788899999999999999999988763 578889999999999999999999986
Q ss_pred CeeeeeccccCCC---chHHHHHHHHHHHHcccCCCCcchHhhhhhcc
Q 007808 542 EVVMLGCLSRELD---RKSIVRAEANMIKLLPQNNHPLTFIVVIFSTF 586 (589)
Q Consensus 542 ~~~~~~~~~~~p~---~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 586 (589)
..+|+ .+.++..+++++..+|+.++|+..+.-+...+
T Consensus 67 --------~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~ 106 (119)
T TIGR02795 67 --------KKYPKSPKAPDALLKLGMSLQELGDKEKAKATLQQVIKRY 106 (119)
T ss_pred --------HHCCCCCcccHHHHHHHHHHHHhCChHHHHHHHHHHHHHC
Confidence 44555 47789999999999999999998887765544
No 147
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.26 E-value=4.2e-05 Score=73.29 Aligned_cols=128 Identities=11% Similarity=0.102 Sum_probs=101.9
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHhhCCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccC
Q 007808 331 CVGNALIDMYAKCGIIENAVDVFNSMDTKDLITWNTIISGLAMHGRGAGALSLFHEMKNAGEMPDGITFIGILCACTHMG 410 (589)
Q Consensus 331 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g 410 (589)
.....|+..+...++++.|..+|+++.+.++.....++..+...++..+|++++++..... +-+......-...|.+.+
T Consensus 170 yLv~~Ll~~l~~t~~~~~ai~lle~L~~~~pev~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~fLl~k~ 248 (395)
T PF09295_consen 170 YLVDTLLKYLSLTQRYDEAIELLEKLRERDPEVAVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEFLLSKK 248 (395)
T ss_pred HHHHHHHHHHhhcccHHHHHHHHHHHHhcCCcHHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcC
Confidence 3445566677778889999999999988888888888888888888889999999988642 335555666667788899
Q ss_pred cHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHHhcCCHHHHHHHHhhCCCCC
Q 007808 411 LVEEGLSYFQSMAMDYSIVPQ-IEHYGCMVDLLARAGRLAEAVDFVKRMPIEA 462 (589)
Q Consensus 411 ~~~~A~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p 462 (589)
+++.|+.+.+++.. ..|+ ..+|..|+.+|.+.|++++|+-.++.++..|
T Consensus 249 ~~~lAL~iAk~av~---lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm~~ 298 (395)
T PF09295_consen 249 KYELALEIAKKAVE---LSPSEFETWYQLAECYIQLGDFENALLALNSCPMLT 298 (395)
T ss_pred CHHHHHHHHHHHHH---hCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCcCCC
Confidence 99999999998874 3455 5689999999999999999999999886433
No 148
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=98.26 E-value=1.5e-06 Score=61.50 Aligned_cols=63 Identities=24% Similarity=0.240 Sum_probs=58.1
Q ss_pred CHHHHHHHHHHHhcCCCHHHHHHHHHHHHccCCCCCcchHHHHHHHhhcC-ChHHHHHHHHHhh
Q 007808 463 DAVIWANLLGSCRVYKNVELAELALERLTELEPKNPANFVMLSNIYGDLG-RWKDVARIKVAMR 525 (589)
Q Consensus 463 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~ 525 (589)
+...|..+...+...|++++|+..|+++++++|+++.++..++.+|.+.| ++++|++.+++..
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al 65 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKAL 65 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHH
Confidence 45678888899999999999999999999999999999999999999999 7999999999885
No 149
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.23 E-value=7.3e-05 Score=69.09 Aligned_cols=155 Identities=11% Similarity=0.023 Sum_probs=111.8
Q ss_pred HHHHhCCChHHHHHHHHHHHHCCCCC-CHhHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHH-------------
Q 007808 369 SGLAMHGRGAGALSLFHEMKNAGEMP-DGITFIGILCACTHMGLVEEGLSYFQSMAMDYSIVPQIEH------------- 434 (589)
Q Consensus 369 ~~~~~~~~~~~A~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~------------- 434 (589)
.++.-.|++++|...--...+. .+ +......-..++.-.++.+.|...|++.+ .+.|+...
T Consensus 177 ~cl~~~~~~~~a~~ea~~ilkl--d~~n~~al~vrg~~~yy~~~~~ka~~hf~qal---~ldpdh~~sk~~~~~~k~le~ 251 (486)
T KOG0550|consen 177 ECLAFLGDYDEAQSEAIDILKL--DATNAEALYVRGLCLYYNDNADKAINHFQQAL---RLDPDHQKSKSASMMPKKLEV 251 (486)
T ss_pred hhhhhcccchhHHHHHHHHHhc--ccchhHHHHhcccccccccchHHHHHHHhhhh---ccChhhhhHHhHhhhHHHHHH
Confidence 3456678888888776666653 22 22222222223445678888888888776 44455322
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhC-CCCC-----CHHHHHHHHHHHhcCCCHHHHHHHHHHHHccCCCCCcchHHHHHHH
Q 007808 435 YGCMVDLLARAGRLAEAVDFVKRM-PIEA-----DAVIWANLLGSCRVYKNVELAELALERLTELEPKNPANFVMLSNIY 508 (589)
Q Consensus 435 ~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 508 (589)
+..=.+-..+.|++.+|.+.|.+. .+.| +...|........+.|+.++|+.-.+++++++|.-..+|..-++++
T Consensus 252 ~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~ 331 (486)
T KOG0550|consen 252 KKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANCH 331 (486)
T ss_pred HHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHH
Confidence 112234456899999999999887 4455 4555666667778999999999999999999999888999999999
Q ss_pred hhcCChHHHHHHHHHhhhCC
Q 007808 509 GDLGRWKDVARIKVAMRDTG 528 (589)
Q Consensus 509 ~~~g~~~~A~~~~~~~~~~~ 528 (589)
...++|++|.+.+++..+..
T Consensus 332 l~le~~e~AV~d~~~a~q~~ 351 (486)
T KOG0550|consen 332 LALEKWEEAVEDYEKAMQLE 351 (486)
T ss_pred HHHHHHHHHHHHHHHHHhhc
Confidence 99999999999999986433
No 150
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=98.23 E-value=5.4e-06 Score=59.38 Aligned_cols=69 Identities=20% Similarity=0.157 Sum_probs=61.3
Q ss_pred HHHhcCCCHHHHHHHHHHHHccCCCCCcchHHHHHHHhhcCChHHHHHHHHHhhhCCCccCCccceeeeCCeeeeecccc
Q 007808 472 GSCRVYKNVELAELALERLTELEPKNPANFVMLSNIYGDLGRWKDVARIKVAMRDTGFKKLPGCSSIEVNEVVMLGCLSR 551 (589)
Q Consensus 472 ~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 551 (589)
..|.+.+++++|.+.++++++++|+++..+...+.++.+.|++++|.+.+++.. +.
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l------------------------~~ 58 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERAL------------------------EL 58 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHH------------------------HH
Confidence 567889999999999999999999999999999999999999999999999986 67
Q ss_pred CCCchHHHHHHHH
Q 007808 552 ELDRKSIVRAEAN 564 (589)
Q Consensus 552 ~p~~~~~~~~l~~ 564 (589)
.|+++.+....+.
T Consensus 59 ~p~~~~~~~~~a~ 71 (73)
T PF13371_consen 59 SPDDPDARALRAM 71 (73)
T ss_pred CCCcHHHHHHHHh
Confidence 7887777655543
No 151
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.22 E-value=3.9e-05 Score=63.57 Aligned_cols=114 Identities=15% Similarity=0.093 Sum_probs=50.5
Q ss_pred cCcHHHHHHHHHHhHHhcCCCC-ChHHHHHHHHHHHhcCCHHHHHHHHhhCC-CCCCH----HHHHHHHHHHhcCCCHHH
Q 007808 409 MGLVEEGLSYFQSMAMDYSIVP-QIEHYGCMVDLLARAGRLAEAVDFVKRMP-IEADA----VIWANLLGSCRVYKNVEL 482 (589)
Q Consensus 409 ~g~~~~A~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~~----~~~~~l~~~~~~~g~~~~ 482 (589)
.++...+...++.+..+++-.| .....-.+...+...|++++|...|+.+. ..|+. .....+...+...|++++
T Consensus 24 ~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~ 103 (145)
T PF09976_consen 24 AGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDE 103 (145)
T ss_pred CCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHH
Confidence 4445555555555543321110 01222233444555555555555555541 11222 122223344555555555
Q ss_pred HHHHHHHHHccCCCCCcchHHHHHHHhhcCChHHHHHHHHH
Q 007808 483 AELALERLTELEPKNPANFVMLSNIYGDLGRWKDVARIKVA 523 (589)
Q Consensus 483 A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 523 (589)
|+..++... -.+-.+..+..++++|.+.|++++|...|++
T Consensus 104 Al~~L~~~~-~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 104 ALATLQQIP-DEAFKALAAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred HHHHHHhcc-CcchHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 555554422 1222244555555556666666665555554
No 152
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.21 E-value=0.0068 Score=58.60 Aligned_cols=203 Identities=12% Similarity=0.058 Sum_probs=127.9
Q ss_pred hhHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcC---ChHHHHHHHhhCCC----CCcchHHHHHHHHHhCCChHHHHHH
Q 007808 311 LDFSKWVHVYAEYNGYQGNVCVGNALIDMYAKCG---IIENAVDVFNSMDT----KDLITWNTIISGLAMHGRGAGALSL 383 (589)
Q Consensus 311 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~A~~~ 383 (589)
.+++..+++..+..-..-+..+|..+.+.--..- ..+.....++++.. .-..+|-.+++.-.+..-...|..+
T Consensus 309 t~e~~~~yEr~I~~l~~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~i 388 (656)
T KOG1914|consen 309 TDEAASIYERAIEGLLKENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKI 388 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHH
Confidence 3455566666555433334444544443221111 23444444444432 2334677777777777778888889
Q ss_pred HHHHHHCCCCC-CHhHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHhhCC---
Q 007808 384 FHEMKNAGEMP-DGITFIGILCACTHMGLVEEGLSYFQSMAMDYSIVPQIEHYGCMVDLLARAGRLAEAVDFVKRMP--- 459 (589)
Q Consensus 384 ~~~m~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--- 459 (589)
|.+..+.+..+ +....++++..++. ++.+-|.++|+.-.+++| .++.--...++.+...++-..|..+|++..
T Consensus 389 F~kaR~~~r~~hhVfVa~A~mEy~cs-kD~~~AfrIFeLGLkkf~--d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~ 465 (656)
T KOG1914|consen 389 FKKAREDKRTRHHVFVAAALMEYYCS-KDKETAFRIFELGLKKFG--DSPEYVLKYLDFLSHLNDDNNARALFERVLTSV 465 (656)
T ss_pred HHHHhhccCCcchhhHHHHHHHHHhc-CChhHHHHHHHHHHHhcC--CChHHHHHHHHHHHHhCcchhHHHHHHHHHhcc
Confidence 99988877777 56667777776654 788888899887776554 333344567777888888888888888872
Q ss_pred CCC--CHHHHHHHHHHHhcCCCHHHHHHHHHHHHccCCCC----CcchHHHHHHHhhcCChHH
Q 007808 460 IEA--DAVIWANLLGSCRVYKNVELAELALERLTELEPKN----PANFVMLSNIYGDLGRWKD 516 (589)
Q Consensus 460 ~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~----~~~~~~l~~~~~~~g~~~~ 516 (589)
+.| ....|..++.-=..-|+...+.++-++....-|.+ ...-..+++.|.-.+.+.-
T Consensus 466 l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~af~~~qe~~~~~~~~~v~RY~~~d~~~c 528 (656)
T KOG1914|consen 466 LSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTAFPADQEYEGNETALFVDRYGILDLYPC 528 (656)
T ss_pred CChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHhcchhhcCCCChHHHHHHHHhhcccccc
Confidence 333 34778888877788888888888887777655521 1233344555655555443
No 153
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.20 E-value=0.011 Score=60.76 Aligned_cols=67 Identities=19% Similarity=0.166 Sum_probs=55.1
Q ss_pred HHHHHHHHHhcCCCH---HHHHHHHHHHHccCCCCCcchHHHHHHHhhcCChHHHHHHHHHhhhCCCccC
Q 007808 466 IWANLLGSCRVYKNV---ELAELALERLTELEPKNPANFVMLSNIYGDLGRWKDVARIKVAMRDTGFKKL 532 (589)
Q Consensus 466 ~~~~l~~~~~~~g~~---~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 532 (589)
+.+.++..+.+.++. -+|+-+++..+..+|.|+.+-..|+++|.-.|-+..|.+.|+.+--+.|..|
T Consensus 438 av~~Lid~~rktnd~~~l~eaI~LLE~glt~s~hnf~~KLlLiriY~~lGa~p~a~~~y~tLdIK~IQ~D 507 (932)
T KOG2053|consen 438 AVNHLIDLWRKTNDLTDLFEAITLLENGLTKSPHNFQTKLLLIRIYSYLGAFPDAYELYKTLDIKNIQTD 507 (932)
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHHHhhcCCccHHHHHHHHHHHHHhcCChhHHHHHHhcchHHhhhc
Confidence 345666778777764 5778888999999999999999999999999999999999999965555544
No 154
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=98.16 E-value=1.7e-06 Score=63.96 Aligned_cols=78 Identities=18% Similarity=0.319 Sum_probs=45.0
Q ss_pred cCCHHHHHHHHhhC-CCCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHccCCCCCcchHHHHHHHhhcCChHHHHHH
Q 007808 445 AGRLAEAVDFVKRM-PIEA---DAVIWANLLGSCRVYKNVELAELALERLTELEPKNPANFVMLSNIYGDLGRWKDVARI 520 (589)
Q Consensus 445 ~g~~~~A~~~~~~~-~~~p---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~ 520 (589)
.|++++|+.+++++ ...| +...+..+..++.+.|++++|..++++ .+.+|.++.....++.++.+.|++++|+++
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~ 80 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKA 80 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHH
Confidence 35566666666655 1222 333444455666666666666666666 555555555666666666666666666666
Q ss_pred HHH
Q 007808 521 KVA 523 (589)
Q Consensus 521 ~~~ 523 (589)
+++
T Consensus 81 l~~ 83 (84)
T PF12895_consen 81 LEK 83 (84)
T ss_dssp HHH
T ss_pred Hhc
Confidence 654
No 155
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.13 E-value=0.00019 Score=59.37 Aligned_cols=125 Identities=14% Similarity=0.124 Sum_probs=81.3
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHCCCCCC---HhHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC--hHHHHHH
Q 007808 364 WNTIISGLAMHGRGAGALSLFHEMKNAGEMPD---GITFIGILCACTHMGLVEEGLSYFQSMAMDYSIVPQ--IEHYGCM 438 (589)
Q Consensus 364 ~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~--~~~~~~l 438 (589)
|..++..+ ..++...+...++.+.... +.+ ......+...+...|++++|...|+.+... .-.|+ ......|
T Consensus 15 y~~~~~~~-~~~~~~~~~~~~~~l~~~~-~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~-~~d~~l~~~a~l~L 91 (145)
T PF09976_consen 15 YEQALQAL-QAGDPAKAEAAAEQLAKDY-PSSPYAALAALQLAKAAYEQGDYDEAKAALEKALAN-APDPELKPLARLRL 91 (145)
T ss_pred HHHHHHHH-HCCCHHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh-CCCHHHHHHHHHHH
Confidence 33344444 3677788887888887752 222 223444556777888888888888888654 21122 1234456
Q ss_pred HHHHHhcCCHHHHHHHHhhCCCC-CCHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Q 007808 439 VDLLARAGRLAEAVDFVKRMPIE-ADAVIWANLLGSCRVYKNVELAELALERLT 491 (589)
Q Consensus 439 ~~~~~~~g~~~~A~~~~~~~~~~-p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 491 (589)
...+...|++++|+..++..... .....+......+...|++++|...|++++
T Consensus 92 A~~~~~~~~~d~Al~~L~~~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~Al 145 (145)
T PF09976_consen 92 ARILLQQGQYDEALATLQQIPDEAFKALAAELLGDIYLAQGDYDEARAAYQKAL 145 (145)
T ss_pred HHHHHHcCCHHHHHHHHHhccCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence 77788888888888888776322 234455556678888888888888888763
No 156
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=98.12 E-value=7.3e-06 Score=78.86 Aligned_cols=89 Identities=10% Similarity=0.005 Sum_probs=82.1
Q ss_pred HHHHhcCCCHHHHHHHHHHHHccCCCCCcchHHHHHHHhhcCChHHHHHHHHHhhhCCCccCCccceeeeCCeeeeeccc
Q 007808 471 LGSCRVYKNVELAELALERLTELEPKNPANFVMLSNIYGDLGRWKDVARIKVAMRDTGFKKLPGCSSIEVNEVVMLGCLS 550 (589)
Q Consensus 471 ~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 550 (589)
...+...|++++|++.|+++++++|+++.+|..++.+|.+.|++++|+..++++. +
T Consensus 9 a~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al------------------------~ 64 (356)
T PLN03088 9 AKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAI------------------------E 64 (356)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH------------------------H
Confidence 4566788999999999999999999999999999999999999999999999986 7
Q ss_pred cCCCchHHHHHHHHHHHHcccCCCCcchHhhhh
Q 007808 551 RELDRKSIVRAEANMIKLLPQNNHPLTFIVVIF 583 (589)
Q Consensus 551 ~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 583 (589)
++|+++.++..+|.+|..+|+.++|+..+....
T Consensus 65 l~P~~~~a~~~lg~~~~~lg~~~eA~~~~~~al 97 (356)
T PLN03088 65 LDPSLAKAYLRKGTACMKLEEYQTAKAALEKGA 97 (356)
T ss_pred hCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 899999999999999999999999988876543
No 157
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=98.12 E-value=7.5e-07 Score=65.83 Aligned_cols=79 Identities=20% Similarity=0.226 Sum_probs=68.4
Q ss_pred CCCHHHHHHHHHHHHccCCC--CCcchHHHHHHHhhcCChHHHHHHHHHhhhCCCccCCccceeeeCCeeeeeccccCCC
Q 007808 477 YKNVELAELALERLTELEPK--NPANFVMLSNIYGDLGRWKDVARIKVAMRDTGFKKLPGCSSIEVNEVVMLGCLSRELD 554 (589)
Q Consensus 477 ~g~~~~A~~~~~~~~~~~p~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 554 (589)
.|+++.|+.+++++++..|. +...+..++.+|.+.|++++|+.++++. +.+|.
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~~-------------------------~~~~~ 56 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQKL-------------------------KLDPS 56 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHCH-------------------------THHHC
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHHh-------------------------CCCCC
Confidence 68999999999999999985 4567777899999999999999999883 57788
Q ss_pred chHHHHHHHHHHHHcccCCCCcchHh
Q 007808 555 RKSIVRAEANMIKLLPQNNHPLTFIV 580 (589)
Q Consensus 555 ~~~~~~~l~~~~~~~~~~~~~~~~~~ 580 (589)
++.....+|..+.++|+.++|+..+.
T Consensus 57 ~~~~~~l~a~~~~~l~~y~eAi~~l~ 82 (84)
T PF12895_consen 57 NPDIHYLLARCLLKLGKYEEAIKALE 82 (84)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHh
Confidence 89999999999999999999988764
No 158
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.10 E-value=2.6e-05 Score=59.26 Aligned_cols=91 Identities=20% Similarity=0.278 Sum_probs=73.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhC-CCCC-CHHHHHHHHHHHhcCCCHHHHHHHHHHHHccCCCCCcchHHHHHHHhhcC
Q 007808 435 YGCMVDLLARAGRLAEAVDFVKRM-PIEA-DAVIWANLLGSCRVYKNVELAELALERLTELEPKNPANFVMLSNIYGDLG 512 (589)
Q Consensus 435 ~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 512 (589)
+..++..+...|++++|...++++ ...| +...+..+...+...|++++|.+.++++....|.++..+..++.++...|
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLG 82 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHH
Confidence 455677778888888888888876 3344 34566667778888899999999999999988888888889999999999
Q ss_pred ChHHHHHHHHHhh
Q 007808 513 RWKDVARIKVAMR 525 (589)
Q Consensus 513 ~~~~A~~~~~~~~ 525 (589)
++++|...+++..
T Consensus 83 ~~~~a~~~~~~~~ 95 (100)
T cd00189 83 KYEEALEAYEKAL 95 (100)
T ss_pred hHHHHHHHHHHHH
Confidence 9999999888875
No 159
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.10 E-value=2.7e-05 Score=69.15 Aligned_cols=95 Identities=17% Similarity=0.152 Sum_probs=47.8
Q ss_pred ccCcHHHHHHHHHHhHHhcCCCC-ChHHHHHHHHHHHhcCCHHHHHHHHhhC-CCCCC-HHHHHHHHHHHhcCCCHHHHH
Q 007808 408 HMGLVEEGLSYFQSMAMDYSIVP-QIEHYGCMVDLLARAGRLAEAVDFVKRM-PIEAD-AVIWANLLGSCRVYKNVELAE 484 (589)
Q Consensus 408 ~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~A~ 484 (589)
+.+++.+|+..|.+++. +.| |+..|..-..+|.+.|.++.|++-.+.. .++|. ..+|..|..+|...|++++|+
T Consensus 93 ~~~~Y~eAv~kY~~AI~---l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~A~ 169 (304)
T KOG0553|consen 93 KNKDYQEAVDKYTEAIE---LDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEEAI 169 (304)
T ss_pred HhhhHHHHHHHHHHHHh---cCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHHHH
Confidence 44555555555555542 222 3444444455555555555555544444 34442 344555555555555555555
Q ss_pred HHHHHHHccCCCCCcchHHHH
Q 007808 485 LALERLTELEPKNPANFVMLS 505 (589)
Q Consensus 485 ~~~~~~~~~~p~~~~~~~~l~ 505 (589)
+.|+++++++|++......|-
T Consensus 170 ~aykKaLeldP~Ne~~K~nL~ 190 (304)
T KOG0553|consen 170 EAYKKALELDPDNESYKSNLK 190 (304)
T ss_pred HHHHhhhccCCCcHHHHHHHH
Confidence 555555555555554333333
No 160
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=98.08 E-value=0.0063 Score=57.17 Aligned_cols=108 Identities=19% Similarity=0.204 Sum_probs=68.8
Q ss_pred HHHHHHHHhcCChHHHHHHHhhCCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCcHH
Q 007808 334 NALIDMYAKCGIIENAVDVFNSMDTKDLITWNTIISGLAMHGRGAGALSLFHEMKNAGEMPDGITFIGILCACTHMGLVE 413 (589)
Q Consensus 334 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~ 413 (589)
+..+.-+...|+...|.++-.+..-|+...|...+.+|+..++|++-..+-.. .-++.-|...+.+|.+.|+..
T Consensus 181 ~~Ti~~li~~~~~k~A~kl~k~Fkv~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~~~~~~~ 254 (319)
T PF04840_consen 181 NDTIRKLIEMGQEKQAEKLKKEFKVPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACLKYGNKK 254 (319)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHHHCCCHH
Confidence 33455556667777777777777777777777777777777777765554321 113356777777777777777
Q ss_pred HHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHhhC
Q 007808 414 EGLSYFQSMAMDYSIVPQIEHYGCMVDLLARAGRLAEAVDFVKRM 458 (589)
Q Consensus 414 ~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 458 (589)
+|..++.++ ++ ..-+..|.++|++.+|.+.--+.
T Consensus 255 eA~~yI~k~-------~~----~~rv~~y~~~~~~~~A~~~A~~~ 288 (319)
T PF04840_consen 255 EASKYIPKI-------PD----EERVEMYLKCGDYKEAAQEAFKE 288 (319)
T ss_pred HHHHHHHhC-------Ch----HHHHHHHHHCCCHHHHHHHHHHc
Confidence 777776653 11 23456677777777776654444
No 161
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=98.07 E-value=6.3e-05 Score=64.20 Aligned_cols=94 Identities=16% Similarity=-0.037 Sum_probs=76.4
Q ss_pred ChHHHHHHHHHHHhcCCHHHHHHHHhhC-CCCCC----HHHHHHHHHHHhcCCCHHHHHHHHHHHHccCCCCCcchHHHH
Q 007808 431 QIEHYGCMVDLLARAGRLAEAVDFVKRM-PIEAD----AVIWANLLGSCRVYKNVELAELALERLTELEPKNPANFVMLS 505 (589)
Q Consensus 431 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~ 505 (589)
....|..++..+...|++++|+..+++. ...|+ ..++..+...+...|++++|+..+++++++.|.....+..++
T Consensus 34 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la 113 (168)
T CHL00033 34 EAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMA 113 (168)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHH
Confidence 3556677788888889999999988887 23332 347788889999999999999999999999999888899999
Q ss_pred HHHh-------hcCChHHHHHHHHHh
Q 007808 506 NIYG-------DLGRWKDVARIKVAM 524 (589)
Q Consensus 506 ~~~~-------~~g~~~~A~~~~~~~ 524 (589)
.++. +.|++++|+..+++.
T Consensus 114 ~i~~~~~~~~~~~g~~~~A~~~~~~a 139 (168)
T CHL00033 114 VICHYRGEQAIEQGDSEIAEAWFDQA 139 (168)
T ss_pred HHHHHhhHHHHHcccHHHHHHHHHHH
Confidence 9988 888888776666654
No 162
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.05 E-value=8.2e-06 Score=48.45 Aligned_cols=34 Identities=18% Similarity=0.390 Sum_probs=26.0
Q ss_pred cHHHHHHHHHcCCChhHHHHHHHHhhhCCCCCCc
Q 007808 67 SWNAMFNGYAQNEFHRTVVVLFTQMKKLDAMPNC 100 (589)
Q Consensus 67 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~ 100 (589)
+||++|.+|++.|++++|.++|++|.+.|++||.
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 6777777777777777777777777777777763
No 163
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.05 E-value=1.2e-05 Score=61.12 Aligned_cols=93 Identities=16% Similarity=0.097 Sum_probs=81.8
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHccCCCCCcchHHHHHHHhhcCChHHHHHHHHHhhhCCCccCCccceeeeCCeeee
Q 007808 467 WANLLGSCRVYKNVELAELALERLTELEPKNPANFVMLSNIYGDLGRWKDVARIKVAMRDTGFKKLPGCSSIEVNEVVML 546 (589)
Q Consensus 467 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 546 (589)
+..+...+...|++++|...++++++..|.++..+..++.++...|++++|.+.+++..
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~--------------------- 61 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKAL--------------------- 61 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------
Confidence 45566778889999999999999999999988899999999999999999999999885
Q ss_pred eccccCCCchHHHHHHHHHHHHcccCCCCcchHhhhh
Q 007808 547 GCLSRELDRKSIVRAEANMIKLLPQNNHPLTFIVVIF 583 (589)
Q Consensus 547 ~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 583 (589)
+..|.++.++..++.++...|+.++|...+..+.
T Consensus 62 ---~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 95 (100)
T cd00189 62 ---ELDPDNAKAYYNLGLAYYKLGKYEEALEAYEKAL 95 (100)
T ss_pred ---hCCCcchhHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 5678888999999999999999888877765543
No 164
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.04 E-value=1e-05 Score=48.01 Aligned_cols=34 Identities=50% Similarity=0.764 Sum_probs=30.1
Q ss_pred chHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCC
Q 007808 362 ITWNTIISGLAMHGRGAGALSLFHEMKNAGEMPD 395 (589)
Q Consensus 362 ~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~ 395 (589)
.+|++++.+|++.|++++|.++|++|.+.|+.||
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 3688999999999999999999999999998887
No 165
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=98.00 E-value=0.00044 Score=56.78 Aligned_cols=149 Identities=14% Similarity=0.071 Sum_probs=114.4
Q ss_pred HHhCCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHH
Q 007808 371 LAMHGRGAGALSLFHEMKNAGEMPDGITFIGILCACTHMGLVEEGLSYFQSMAMDYSIVPQIEHYGCMVDLLARAGRLAE 450 (589)
Q Consensus 371 ~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 450 (589)
..+.=+++....-..+-.+ ..|....-..|..+..+.|+..+|...|++.... -+-.|......+.++....+++..
T Consensus 66 ~~q~ldP~R~~Rea~~~~~--~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG-~fA~d~a~lLglA~Aqfa~~~~A~ 142 (251)
T COG4700 66 LQQKLDPERHLREATEELA--IAPTVQNRYRLANALAELGRYHEAVPHYQQALSG-IFAHDAAMLLGLAQAQFAIQEFAA 142 (251)
T ss_pred HHHhcChhHHHHHHHHHHh--hchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhcc-ccCCCHHHHHHHHHHHHhhccHHH
Confidence 3333444444433333333 4677777778899999999999999999998652 345667788888999999999999
Q ss_pred HHHHHhhC-C-----CCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHccCCCCCcchHHHHHHHhhcCChHHHHHHHHHh
Q 007808 451 AVDFVKRM-P-----IEADAVIWANLLGSCRVYKNVELAELALERLTELEPKNPANFVMLSNIYGDLGRWKDVARIKVAM 524 (589)
Q Consensus 451 A~~~~~~~-~-----~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 524 (589)
|...++++ . ..||. ...+...+...|.++.|+..|+.++..-|+ +......+..+.++|+.++|..-+..+
T Consensus 143 a~~tLe~l~e~~pa~r~pd~--~Ll~aR~laa~g~~a~Aesafe~a~~~ypg-~~ar~~Y~e~La~qgr~~ea~aq~~~v 219 (251)
T COG4700 143 AQQTLEDLMEYNPAFRSPDG--HLLFARTLAAQGKYADAESAFEVAISYYPG-PQARIYYAEMLAKQGRLREANAQYVAV 219 (251)
T ss_pred HHHHHHHHhhcCCccCCCCc--hHHHHHHHHhcCCchhHHHHHHHHHHhCCC-HHHHHHHHHHHHHhcchhHHHHHHHHH
Confidence 99999987 2 33443 344668899999999999999999999998 888899999999999988887765555
Q ss_pred h
Q 007808 525 R 525 (589)
Q Consensus 525 ~ 525 (589)
.
T Consensus 220 ~ 220 (251)
T COG4700 220 V 220 (251)
T ss_pred H
Confidence 3
No 166
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.98 E-value=0.00023 Score=71.64 Aligned_cols=62 Identities=21% Similarity=0.142 Sum_probs=43.0
Q ss_pred CHHHHHHHHHHHhcCCCHHHHHHHHHHHHccCCCCCcchHHHHHHHhhcCChHHHHHHHHHhh
Q 007808 463 DAVIWANLLGSCRVYKNVELAELALERLTELEPKNPANFVMLSNIYGDLGRWKDVARIKVAMR 525 (589)
Q Consensus 463 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 525 (589)
+...+..+.......|++++|...++++++++|+ ...|..++.++...|+.++|.+.+++..
T Consensus 419 ~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ps-~~a~~~lG~~~~~~G~~~eA~~~~~~A~ 480 (517)
T PRK10153 419 LPRIYEILAVQALVKGKTDEAYQAINKAIDLEMS-WLNYVLLGKVYELKGDNRLAADAYSTAF 480 (517)
T ss_pred ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4455555554445567777777777777777774 6677777777777777777777777764
No 167
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=97.98 E-value=1.1e-05 Score=47.47 Aligned_cols=33 Identities=24% Similarity=0.395 Sum_probs=23.2
Q ss_pred ccHHHHHHHHHcCCChhHHHHHHHHhhhCCCCC
Q 007808 66 VSWNAMFNGYAQNEFHRTVVVLFTQMKKLDAMP 98 (589)
Q Consensus 66 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p 98 (589)
.+|+.++.+|++.|+++.|.++|++|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 467777777777777777777777777776665
No 168
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.94 E-value=0.00043 Score=69.73 Aligned_cols=139 Identities=13% Similarity=0.024 Sum_probs=97.2
Q ss_pred CCcchHHHHHHHHHh--CC---ChHHHHHHHHHHHHCCCCCCH-hHHHHHHHHHhcc--------CcHHHHHHHHHHhHH
Q 007808 359 KDLITWNTIISGLAM--HG---RGAGALSLFHEMKNAGEMPDG-ITFIGILCACTHM--------GLVEEGLSYFQSMAM 424 (589)
Q Consensus 359 ~~~~~~~~l~~~~~~--~~---~~~~A~~~~~~m~~~~~~p~~-~~~~~l~~~~~~~--------g~~~~A~~~~~~~~~ 424 (589)
.+...|...+.+... .+ +...|..+|++..+ ..|+. ..+..+..++... +++..+.+..++...
T Consensus 335 ~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~--ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~a 412 (517)
T PRK10153 335 HQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILK--SEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVA 412 (517)
T ss_pred CCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhh
Confidence 456667666666432 22 36688889999888 46753 3444443333221 123444444444322
Q ss_pred hcCCCCChHHHHHHHHHHHhcCCHHHHHHHHhhC-CCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHccCCCCCc
Q 007808 425 DYSIVPQIEHYGCMVDLLARAGRLAEAVDFVKRM-PIEADAVIWANLLGSCRVYKNVELAELALERLTELEPKNPA 499 (589)
Q Consensus 425 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 499 (589)
......+...|..+.-.+...|++++|...++++ ...|+...|..+...+...|+.++|.+.|++++.++|.++.
T Consensus 413 l~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~pt 488 (517)
T PRK10153 413 LPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEMSWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGENT 488 (517)
T ss_pred cccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCch
Confidence 1123345677888877777889999999999998 57788888988999999999999999999999999999774
No 169
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=97.94 E-value=2.1e-05 Score=46.30 Aligned_cols=33 Identities=39% Similarity=0.596 Sum_probs=27.3
Q ss_pred chHHHHHHHHHhCCChHHHHHHHHHHHHCCCCC
Q 007808 362 ITWNTIISGLAMHGRGAGALSLFHEMKNAGEMP 394 (589)
Q Consensus 362 ~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p 394 (589)
.+|+.++.+|.+.|+++.|.++|++|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 578888888888888888888888888888776
No 170
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.93 E-value=0.00058 Score=63.40 Aligned_cols=161 Identities=14% Similarity=0.076 Sum_probs=91.3
Q ss_pred HhccCcHHHHHHHHHHhHHh--cCCCCChHHHHHHHHHHHhcCCHHHHHHHHhhC-CCCCCH-HHHHHHHHHHhcCCCHH
Q 007808 406 CTHMGLVEEGLSYFQSMAMD--YSIVPQIEHYGCMVDLLARAGRLAEAVDFVKRM-PIEADA-VIWANLLGSCRVYKNVE 481 (589)
Q Consensus 406 ~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~-~~~~~l~~~~~~~g~~~ 481 (589)
..+.|++..|.+.|.+.+.- ....|+...|........+.|+..+|+.--+.. .++|.. ..+..-..++...++++
T Consensus 259 ~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~l~le~~e 338 (486)
T KOG0550|consen 259 AFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANCHLALEKWE 338 (486)
T ss_pred HhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHHHH
Confidence 34567888888888777621 122334566777777788899999998877776 333321 12222225567788999
Q ss_pred HHHHHHHHHHccCCCCCcchHHHHHHHhhcCChHHHHHHHHHhhhCCCccCCccce----eeeCCeeeeeccccCCCchH
Q 007808 482 LAELALERLTELEPKNPANFVMLSNIYGDLGRWKDVARIKVAMRDTGFKKLPGCSS----IEVNEVVMLGCLSRELDRKS 557 (589)
Q Consensus 482 ~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~p~~~~ 557 (589)
+|.+.|+++.+...+ ......|.++ ..-+++.++.+.-...|++. .+.++.....++..||+...
T Consensus 339 ~AV~d~~~a~q~~~s-~e~r~~l~~A----------~~aLkkSkRkd~ykilGi~~~as~~eikkayrk~AL~~Hpd~~a 407 (486)
T KOG0550|consen 339 EAVEDYEKAMQLEKD-CEIRRTLREA----------QLALKKSKRKDWYKILGISRNASDDEIKKAYRKLALVHHPDKNA 407 (486)
T ss_pred HHHHHHHHHHhhccc-cchHHHHHHH----------HHHHHHhhhhhHHHHhhhhhhcccchhhhHHHHHHHHhCCCcCc
Confidence 999999999987765 4444444433 22223222222222223321 22333333336666776544
Q ss_pred HH--------HHHHHHHHHcccCCCCcc
Q 007808 558 IV--------RAEANMIKLLPQNNHPLT 577 (589)
Q Consensus 558 ~~--------~~l~~~~~~~~~~~~~~~ 577 (589)
-- ...|+.|..+++..+..+
T Consensus 408 gsq~eaE~kFkevgeAy~il~d~~kr~r 435 (486)
T KOG0550|consen 408 GSQKEAEAKFKEVGEAYTILSDPMKRVR 435 (486)
T ss_pred chhHHHHHHHHHHHHHHHHhcCHHHHhh
Confidence 33 346666766666655444
No 171
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.93 E-value=0.00035 Score=59.87 Aligned_cols=129 Identities=16% Similarity=0.143 Sum_probs=77.6
Q ss_pred chHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCC--HhHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHH
Q 007808 362 ITWNTIISGLAMHGRGAGALSLFHEMKNAGEMPD--GITFIGILCACTHMGLVEEGLSYFQSMAMDYSIVPQIEHYGCMV 439 (589)
Q Consensus 362 ~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~ 439 (589)
..+..+...+...|++++|+..|++..+.+..+. ...+..+...+.+.|++++|...+++.... .+.+...+..+.
T Consensus 36 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg 113 (172)
T PRK02603 36 FVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALEL--NPKQPSALNNIA 113 (172)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcccHHHHHHHH
Confidence 4566666667777777777777777765432222 245666666777777777777777766542 122344555556
Q ss_pred HHHHhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHccCCCCCcchHHHHHHHhhcCC
Q 007808 440 DLLARAGRLAEAVDFVKRMPIEADAVIWANLLGSCRVYKNVELAELALERLTELEPKNPANFVMLSNIYGDLGR 513 (589)
Q Consensus 440 ~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 513 (589)
.+|...|+...+..-++.. ...+++|.++++++++.+|++ +..++..+...|+
T Consensus 114 ~~~~~~g~~~~a~~~~~~A------------------~~~~~~A~~~~~~a~~~~p~~---~~~~~~~~~~~~~ 166 (172)
T PRK02603 114 VIYHKRGEKAEEAGDQDEA------------------EALFDKAAEYWKQAIRLAPNN---YIEAQNWLKTTGR 166 (172)
T ss_pred HHHHHcCChHhHhhCHHHH------------------HHHHHHHHHHHHHHHhhCchh---HHHHHHHHHhcCc
Confidence 6666666655544322221 112678888999999888885 4455555544443
No 172
>PRK15331 chaperone protein SicA; Provisional
Probab=97.93 E-value=0.00019 Score=58.50 Aligned_cols=88 Identities=13% Similarity=0.029 Sum_probs=76.9
Q ss_pred HHHHHHhcCCHHHHHHHHhhC-CCCC-CHHHHHHHHHHHhcCCCHHHHHHHHHHHHccCCCCCcchHHHHHHHhhcCChH
Q 007808 438 MVDLLARAGRLAEAVDFVKRM-PIEA-DAVIWANLLGSCRVYKNVELAELALERLTELEPKNPANFVMLSNIYGDLGRWK 515 (589)
Q Consensus 438 l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 515 (589)
...-+...|++++|..+|.-+ ...| +..-|..|..++...+++++|+..|..+..++++||..+...+.+|...|+.+
T Consensus 43 ~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l~~~~ 122 (165)
T PRK15331 43 HAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLLMRKAA 122 (165)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHHhCCHH
Confidence 344556899999999999877 2333 56667888888999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhh
Q 007808 516 DVARIKVAMR 525 (589)
Q Consensus 516 ~A~~~~~~~~ 525 (589)
.|...|+...
T Consensus 123 ~A~~~f~~a~ 132 (165)
T PRK15331 123 KARQCFELVN 132 (165)
T ss_pred HHHHHHHHHH
Confidence 9999999885
No 173
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=97.91 E-value=0.00016 Score=64.71 Aligned_cols=105 Identities=15% Similarity=0.103 Sum_probs=86.5
Q ss_pred CCChHHHHHHHHHHHhcCCHHHHHHHHhhC-CCCC-CHHHHHHHHHHHh---cCCCHHHHHHHHHHHHccCCCCCcchHH
Q 007808 429 VPQIEHYGCMVDLLARAGRLAEAVDFVKRM-PIEA-DAVIWANLLGSCR---VYKNVELAELALERLTELEPKNPANFVM 503 (589)
Q Consensus 429 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~---~~g~~~~A~~~~~~~~~~~p~~~~~~~~ 503 (589)
+-|...|-.|..+|...|+++.|...|.+. .+.| +...+..+..++. ......++..+++++++.+|.|+.+...
T Consensus 153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral~l 232 (287)
T COG4235 153 PGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRALSL 232 (287)
T ss_pred CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHHHH
Confidence 457899999999999999999999999988 3444 5566666665543 2335788999999999999999999999
Q ss_pred HHHHHhhcCChHHHHHHHHHhhhCCCccCC
Q 007808 504 LSNIYGDLGRWKDVARIKVAMRDTGFKKLP 533 (589)
Q Consensus 504 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 533 (589)
|+..+...|++.+|...++.|.+..-..+|
T Consensus 233 LA~~afe~g~~~~A~~~Wq~lL~~lp~~~~ 262 (287)
T COG4235 233 LAFAAFEQGDYAEAAAAWQMLLDLLPADDP 262 (287)
T ss_pred HHHHHHHcccHHHHHHHHHHHHhcCCCCCc
Confidence 999999999999999999999755443333
No 174
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.81 E-value=4.8e-05 Score=52.84 Aligned_cols=61 Identities=23% Similarity=0.267 Sum_probs=48.0
Q ss_pred HHHHHHhcCCHHHHHHHHhhC-CCCC-CHHHHHHHHHHHhcCCCHHHHHHHHHHHHccCCCCC
Q 007808 438 MVDLLARAGRLAEAVDFVKRM-PIEA-DAVIWANLLGSCRVYKNVELAELALERLTELEPKNP 498 (589)
Q Consensus 438 l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~ 498 (589)
+...+.+.|++++|++.|+++ ...| +...+..+..++...|++++|...|+++++.+|++|
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 456788889999999998887 4456 456677777888899999999999999999998864
No 175
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.81 E-value=9.5e-05 Score=63.12 Aligned_cols=91 Identities=10% Similarity=-0.093 Sum_probs=75.0
Q ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHccCCCC---CcchHHHHHHHhhcCChHHHHHHHHHhhhCCCccCCccceeee
Q 007808 464 AVIWANLLGSCRVYKNVELAELALERLTELEPKN---PANFVMLSNIYGDLGRWKDVARIKVAMRDTGFKKLPGCSSIEV 540 (589)
Q Consensus 464 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 540 (589)
...+..+...+...|++++|+..|++++.+.|++ +.++..++.+|...|++++|+..+++..
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al--------------- 99 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQAL--------------- 99 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHH---------------
Confidence 4556667778889999999999999999987763 3489999999999999999999999985
Q ss_pred CCeeeeeccccCCCchHHHHHHHHHHH-------HcccCCCCcch
Q 007808 541 NEVVMLGCLSRELDRKSIVRAEANMIK-------LLPQNNHPLTF 578 (589)
Q Consensus 541 ~~~~~~~~~~~~p~~~~~~~~l~~~~~-------~~~~~~~~~~~ 578 (589)
+++|+.+..+..++.+|. ++|+..+|+..
T Consensus 100 ---------~~~~~~~~~~~~la~i~~~~~~~~~~~g~~~~A~~~ 135 (168)
T CHL00033 100 ---------ERNPFLPQALNNMAVICHYRGEQAIEQGDSEIAEAW 135 (168)
T ss_pred ---------HhCcCcHHHHHHHHHHHHHhhHHHHHcccHHHHHHH
Confidence 678888999999999998 55565444433
No 176
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=97.78 E-value=9.6e-05 Score=67.18 Aligned_cols=93 Identities=13% Similarity=0.060 Sum_probs=65.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHhhC-CCCCCH----HHHHHHHHHHhcCCCHHHHHHHHHHHHccCCCC---CcchHHH
Q 007808 433 EHYGCMVDLLARAGRLAEAVDFVKRM-PIEADA----VIWANLLGSCRVYKNVELAELALERLTELEPKN---PANFVML 504 (589)
Q Consensus 433 ~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~---~~~~~~l 504 (589)
..|......+.+.|++++|+..|+.. ...|+. ..+..+..+|...|++++|...|+++++..|++ +.++..+
T Consensus 144 ~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~kl 223 (263)
T PRK10803 144 TDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKV 223 (263)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHH
Confidence 34555455556678888888888776 233432 345556677888888888888888888777664 4556666
Q ss_pred HHHHhhcCChHHHHHHHHHhh
Q 007808 505 SNIYGDLGRWKDVARIKVAMR 525 (589)
Q Consensus 505 ~~~~~~~g~~~~A~~~~~~~~ 525 (589)
+.++...|++++|.+.++++.
T Consensus 224 g~~~~~~g~~~~A~~~~~~vi 244 (263)
T PRK10803 224 GVIMQDKGDTAKAKAVYQQVI 244 (263)
T ss_pred HHHHHHcCCHHHHHHHHHHHH
Confidence 777888888888888888875
No 177
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=97.77 E-value=0.00013 Score=67.83 Aligned_cols=110 Identities=15% Similarity=0.103 Sum_probs=86.4
Q ss_pred HHHHhcCCHHHHHHHHhhCC--------CC---------CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHccCCCCCcchH
Q 007808 440 DLLARAGRLAEAVDFVKRMP--------IE---------ADAVIWANLLGSCRVYKNVELAELALERLTELEPKNPANFV 502 (589)
Q Consensus 440 ~~~~~~g~~~~A~~~~~~~~--------~~---------p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ 502 (589)
+.|.+.|++..|..-|+++. .+ .-..++..+..++.+.+++.+|++...++++++|+|.-+++
T Consensus 216 n~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALy 295 (397)
T KOG0543|consen 216 NVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALY 295 (397)
T ss_pred hHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHH
Confidence 45556666666666555531 11 12345667778889999999999999999999999999999
Q ss_pred HHHHHHhhcCChHHHHHHHHHhhhCCCccCCccceeeeCCeeeeeccccCCCchHHHHHHHHHHHHcccCC
Q 007808 503 MLSNIYGDLGRWKDVARIKVAMRDTGFKKLPGCSSIEVNEVVMLGCLSRELDRKSIVRAEANMIKLLPQNN 573 (589)
Q Consensus 503 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~ 573 (589)
.-+.+|...|+++.|+..|+++. +++|+|..+...|..+..+..+..
T Consensus 296 RrG~A~l~~~e~~~A~~df~ka~------------------------k~~P~Nka~~~el~~l~~k~~~~~ 342 (397)
T KOG0543|consen 296 RRGQALLALGEYDLARDDFQKAL------------------------KLEPSNKAARAELIKLKQKIREYE 342 (397)
T ss_pred HHHHHHHhhccHHHHHHHHHHHH------------------------HhCCCcHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999996 789999999988887766555443
No 178
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.75 E-value=0.015 Score=54.28 Aligned_cols=96 Identities=13% Similarity=0.101 Sum_probs=59.2
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHCCCCCC-----Hh-HHHHHHHHHhccCcHHHHHHHHHHhHHhc-CCCCC--hHH
Q 007808 364 WNTIISGLAMHGRGAGALSLFHEMKNAGEMPD-----GI-TFIGILCACTHMGLVEEGLSYFQSMAMDY-SIVPQ--IEH 434 (589)
Q Consensus 364 ~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~-----~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~--~~~ 434 (589)
+..+...+.+.|++++|+++|++........+ .. .|...+-++...|++..|.+.+++..... ++..+ ...
T Consensus 158 ~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~ 237 (282)
T PF14938_consen 158 LLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKF 237 (282)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHH
Confidence 44567778888899999999988876433221 11 23334445666788889988888875321 22222 344
Q ss_pred HHHHHHHHHh--cCCHHHHHHHHhhCC
Q 007808 435 YGCMVDLLAR--AGRLAEAVDFVKRMP 459 (589)
Q Consensus 435 ~~~l~~~~~~--~g~~~~A~~~~~~~~ 459 (589)
...|+.++-. ...+++|+.-|+.+.
T Consensus 238 ~~~l~~A~~~~D~e~f~~av~~~d~~~ 264 (282)
T PF14938_consen 238 LEDLLEAYEEGDVEAFTEAVAEYDSIS 264 (282)
T ss_dssp HHHHHHHHHTT-CCCHHHHCHHHTTSS
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHcccC
Confidence 5566777754 346777888888774
No 179
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=97.75 E-value=0.00027 Score=65.39 Aligned_cols=256 Identities=14% Similarity=0.078 Sum_probs=151.3
Q ss_pred HHHhCCChHHHHHHHHHHHHcCCCCCcH----HHHHHHHHHHHhcCChhHHHHHHHHHH--H--cCCC-CChhHHHHHHH
Q 007808 268 GYANNGLFFEVLDAFKRMLTEGRVFPND----ATIVTVLSACARLGALDFSKWVHVYAE--Y--NGYQ-GNVCVGNALID 338 (589)
Q Consensus 268 ~~~~~g~~~~A~~~~~~~~~~~~~~p~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~--~--~~~~-~~~~~~~~l~~ 338 (589)
-+|+.|+....+.+|+..++-| .-|. .+|..+.++|...+++++|.+++..=+ . .|-. ........|..
T Consensus 26 RLck~gdcraGv~ff~aA~qvG--TeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGN 103 (639)
T KOG1130|consen 26 RLCKMGDCRAGVDFFKAALQVG--TEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGN 103 (639)
T ss_pred HHHhccchhhhHHHHHHHHHhc--chHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccccc
Confidence 3667777777777777777765 2232 235555566666667777766543211 0 1100 01112222344
Q ss_pred HHHhcCChHHHHHHHhhCC-------CC--CcchHHHHHHHHHhCCC--------------------hHHHHHHHHHHHH
Q 007808 339 MYAKCGIIENAVDVFNSMD-------TK--DLITWNTIISGLAMHGR--------------------GAGALSLFHEMKN 389 (589)
Q Consensus 339 ~~~~~g~~~~A~~~~~~~~-------~~--~~~~~~~l~~~~~~~~~--------------------~~~A~~~~~~m~~ 389 (589)
.+--.|.+++|.-.-.+-. .+ ....+..+...|...|+ ++.|.++|.+-.+
T Consensus 104 tlKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL~ 183 (639)
T KOG1130|consen 104 TLKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMENLE 183 (639)
T ss_pred hhhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHHHH
Confidence 4444555665554332211 00 12234444555543331 2334444443221
Q ss_pred ----CCCC-CCHhHHHHHHHHHhccCcHHHHHHHHHHh---HHhcCCCCC-hHHHHHHHHHHHhcCCHHHHHHHHhhC--
Q 007808 390 ----AGEM-PDGITFIGILCACTHMGLVEEGLSYFQSM---AMDYSIVPQ-IEHYGCMVDLLARAGRLAEAVDFVKRM-- 458 (589)
Q Consensus 390 ----~~~~-p~~~~~~~l~~~~~~~g~~~~A~~~~~~~---~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-- 458 (589)
.|-. .-...|..|...|.-.|+++.|+...+.- .+++|-... ...+..+.+++.-.|+++.|.+.|+..
T Consensus 184 l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~ 263 (639)
T KOG1130|consen 184 LSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLN 263 (639)
T ss_pred HHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHH
Confidence 1111 11235677777777789999998876542 234443332 457788999999999999999998864
Q ss_pred -----C-CCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHccC------CCCCcchHHHHHHHhhcCChHHHHHHHHHhh
Q 007808 459 -----P-IEADAVIWANLLGSCRVYKNVELAELALERLTELE------PKNPANFVMLSNIYGDLGRWKDVARIKVAMR 525 (589)
Q Consensus 459 -----~-~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 525 (589)
+ ......+..+|.+.|.-..++++|+.++.+=+.+. .....++.+|+..+...|..++|+.+.+.-.
T Consensus 264 LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl 342 (639)
T KOG1130|consen 264 LAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHL 342 (639)
T ss_pred HHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 1 12234556677788888889999999887766532 2235688899999999999999999877664
No 180
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=97.73 E-value=0.00033 Score=63.77 Aligned_cols=103 Identities=9% Similarity=0.040 Sum_probs=78.8
Q ss_pred hHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHHhcCCHHHHHHHHhhC-CCCCC----HHHHHHH
Q 007808 397 ITFIGILCACTHMGLVEEGLSYFQSMAMDYSIVPQ-IEHYGCMVDLLARAGRLAEAVDFVKRM-PIEAD----AVIWANL 470 (589)
Q Consensus 397 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~l 470 (589)
..|...+....+.|++++|...|+.+++.+.-.+- ...+-.++.+|...|++++|...|+++ ...|+ ...+..+
T Consensus 144 ~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~kl 223 (263)
T PRK10803 144 TDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKV 223 (263)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHH
Confidence 34655555556779999999999999876422211 346677899999999999999999988 22332 4455556
Q ss_pred HHHHhcCCCHHHHHHHHHHHHccCCCCCc
Q 007808 471 LGSCRVYKNVELAELALERLTELEPKNPA 499 (589)
Q Consensus 471 ~~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 499 (589)
...+...|+.++|...|+++++..|++..
T Consensus 224 g~~~~~~g~~~~A~~~~~~vi~~yP~s~~ 252 (263)
T PRK10803 224 GVIMQDKGDTAKAKAVYQQVIKKYPGTDG 252 (263)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHCcCCHH
Confidence 67788999999999999999999998553
No 181
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.71 E-value=0.0046 Score=57.75 Aligned_cols=127 Identities=19% Similarity=0.213 Sum_probs=76.7
Q ss_pred HHHHHHHHhcc-CcHHHHHHHHHHhHHhcCCCCC----hHHHHHHHHHHHhcCCHHHHHHHHhhCC---C-----CCCHH
Q 007808 399 FIGILCACTHM-GLVEEGLSYFQSMAMDYSIVPQ----IEHYGCMVDLLARAGRLAEAVDFVKRMP---I-----EADAV 465 (589)
Q Consensus 399 ~~~l~~~~~~~-g~~~~A~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~-----~p~~~ 465 (589)
+..+...|... |++++|.+.|+++..-+..... ...+..++..+.+.|++++|.++|++.. . +.+..
T Consensus 117 ~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~ 196 (282)
T PF14938_consen 117 LKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAK 196 (282)
T ss_dssp HHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHH
Confidence 33444556666 7888888888777553222222 3355667788899999999999998762 1 11121
Q ss_pred -HHHHHHHHHhcCCCHHHHHHHHHHHHccCCCCCc-----chHHHHHHHhh--cCChHHHHHHHHHhh
Q 007808 466 -IWANLLGSCRVYKNVELAELALERLTELEPKNPA-----NFVMLSNIYGD--LGRWKDVARIKVAMR 525 (589)
Q Consensus 466 -~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~-----~~~~l~~~~~~--~g~~~~A~~~~~~~~ 525 (589)
.+...+-++...||...|.+.+++....+|.-.. ....|+.++.. ...+++|+.-|+.+.
T Consensus 197 ~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~~~~D~e~f~~av~~~d~~~ 264 (282)
T PF14938_consen 197 EYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAYEEGDVEAFTEAVAEYDSIS 264 (282)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHHHTT-CCCHHHHCHHHTTSS
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHhCCHHHHHHHHHHHcccC
Confidence 2223334556788999999999999988875332 34445555544 345777777776653
No 182
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=97.70 E-value=1.7e-05 Score=46.22 Aligned_cols=34 Identities=24% Similarity=0.517 Sum_probs=31.5
Q ss_pred HHHHHHccCCCCCcchHHHHHHHhhcCChHHHHH
Q 007808 486 ALERLTELEPKNPANFVMLSNIYGDLGRWKDVAR 519 (589)
Q Consensus 486 ~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 519 (589)
.|+++++++|+++.+|..|+.+|...|++++|++
T Consensus 1 ~y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~~ 34 (34)
T PF13431_consen 1 CYKKAIELNPNNAEAYNNLANLYLNQGDYEEAIA 34 (34)
T ss_pred ChHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhcC
Confidence 3789999999999999999999999999999963
No 183
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=97.70 E-value=0.044 Score=51.00 Aligned_cols=277 Identities=16% Similarity=0.153 Sum_probs=169.0
Q ss_pred cCCHHHHHHHHhhCCC---CCchhHHHHHHH--HHhCCChHHHHHHHHHHHHcCCCCCcHH--HHHHHHHHHHhcCChhH
Q 007808 241 NGDVEECKRLFEEMPE---RNVFSWNGLIGG--YANNGLFFEVLDAFKRMLTEGRVFPNDA--TIVTVLSACARLGALDF 313 (589)
Q Consensus 241 ~~~~~~A~~~~~~~~~---~~~~~~~~l~~~--~~~~g~~~~A~~~~~~~~~~~~~~p~~~--~~~~l~~~~~~~~~~~~ 313 (589)
.|+-..|.++-.+..+ .|....-.++.+ -.-.|+++.|.+-|+.|... |... -+..+.-...+.|+.+.
T Consensus 97 AGda~lARkmt~~~~~llssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~d----PEtRllGLRgLyleAqr~Garea 172 (531)
T COG3898 97 AGDASLARKMTARASKLLSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDD----PETRLLGLRGLYLEAQRLGAREA 172 (531)
T ss_pred cCchHHHHHHHHHHHhhhhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcC----hHHHHHhHHHHHHHHHhcccHHH
Confidence 3455555555444331 333333333332 23357777777777777652 2221 23333333456667777
Q ss_pred HHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHhhCC-----CCCcc--hHHHHHHHHH---hCCChHHHHHH
Q 007808 314 SKWVHVYAEYNGYQGNVCVGNALIDMYAKCGIIENAVDVFNSMD-----TKDLI--TWNTIISGLA---MHGRGAGALSL 383 (589)
Q Consensus 314 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-----~~~~~--~~~~l~~~~~---~~~~~~~A~~~ 383 (589)
|.++-+.....- +.-.....+++...+..|+|+.|+++.+.-. ++++. .--.|+.+-. -..+...|.+.
T Consensus 173 Ar~yAe~Aa~~A-p~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~ 251 (531)
T COG3898 173 ARHYAERAAEKA-PQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDD 251 (531)
T ss_pred HHHHHHHHHhhc-cCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHH
Confidence 766666655443 3334556667777777777877777776543 23332 1112222211 12356666666
Q ss_pred HHHHHHCCCCCCHhH-HHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHhhC----
Q 007808 384 FHEMKNAGEMPDGIT-FIGILCACTHMGLVEEGLSYFQSMAMDYSIVPQIEHYGCMVDLLARAGRLAEAVDFVKRM---- 458 (589)
Q Consensus 384 ~~~m~~~~~~p~~~~-~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~---- 458 (589)
-.+..+ +.||..- -..-..++.+.|+..++-.+++.+-+ ..|.+.++.. ..+.+.|+.. +.-+++.
T Consensus 252 A~~a~K--L~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK---~ePHP~ia~l--Y~~ar~gdta--~dRlkRa~~L~ 322 (531)
T COG3898 252 ALEANK--LAPDLVPAAVVAARALFRDGNLRKGSKILETAWK---AEPHPDIALL--YVRARSGDTA--LDRLKRAKKLE 322 (531)
T ss_pred HHHHhh--cCCccchHHHHHHHHHHhccchhhhhhHHHHHHh---cCCChHHHHH--HHHhcCCCcH--HHHHHHHHHHH
Confidence 666555 5776543 33445678899999999999998863 4577766643 3344566543 2222222
Q ss_pred CCCC-CHHHHHHHHHHHhcCCCHHHHHHHHHHHHccCCCCCcchHHHHHHHhhc-CChHHHHHHHHHhhhCCCccC
Q 007808 459 PIEA-DAVIWANLLGSCRVYKNVELAELALERLTELEPKNPANFVMLSNIYGDL-GRWKDVARIKVAMRDTGFKKL 532 (589)
Q Consensus 459 ~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~~~~~~ 532 (589)
..+| +......+..+-...|++..|..--+.+....|. ..+|..|+++-... |+-.++...+-+..+.+-.|.
T Consensus 323 slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~~pr-es~~lLlAdIeeAetGDqg~vR~wlAqav~APrdPa 397 (531)
T COG3898 323 SLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAREAPR-ESAYLLLADIEEAETGDQGKVRQWLAQAVKAPRDPA 397 (531)
T ss_pred hcCccchHHHHHHHHHHHhccchHHHHHHHHHHhhhCch-hhHHHHHHHHHhhccCchHHHHHHHHHHhcCCCCCc
Confidence 2345 4455566667788999999999999999999998 77899999997765 999999999888876654443
No 184
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.66 E-value=0.048 Score=51.32 Aligned_cols=105 Identities=14% Similarity=0.202 Sum_probs=63.5
Q ss_pred HHHHHHHHhcCCChHHHHHHhcccCCCChhhHHHHHHHHHhcCCHHHHHHHHhhCCCCCchhHHHHHHHHHhCCChHHHH
Q 007808 200 WNTIVSGYIDVRNMIEARKLFDQMPKKDVISWNTMLSGYANNGDVEECKRLFEEMPERNVFSWNGLIGGYANNGLFFEVL 279 (589)
Q Consensus 200 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 279 (589)
.+..+.-+...|+...|.++-.+..=|+...|-..+.+++..++|++..++-.. +.++..|..++..|.+.|+..+|.
T Consensus 180 l~~Ti~~li~~~~~k~A~kl~k~Fkv~dkrfw~lki~aLa~~~~w~eL~~fa~s--kKsPIGyepFv~~~~~~~~~~eA~ 257 (319)
T PF04840_consen 180 LNDTIRKLIEMGQEKQAEKLKKEFKVPDKRFWWLKIKALAENKDWDELEKFAKS--KKSPIGYEPFVEACLKYGNKKEAS 257 (319)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCCHHHHHHHHhC--CCCCCChHHHHHHHHHCCCHHHHH
Confidence 344455556666666676666666556666777777777777777766665443 345566666777777777777766
Q ss_pred HHHHHHHHcCCCCCcHHHHHHHHHHHHhcCChhHHHHH
Q 007808 280 DAFKRMLTEGRVFPNDATIVTVLSACARLGALDFSKWV 317 (589)
Q Consensus 280 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~ 317 (589)
.+...+ ++ ..-+..|.+.|++.+|.+.
T Consensus 258 ~yI~k~-------~~----~~rv~~y~~~~~~~~A~~~ 284 (319)
T PF04840_consen 258 KYIPKI-------PD----EERVEMYLKCGDYKEAAQE 284 (319)
T ss_pred HHHHhC-------Ch----HHHHHHHHHCCCHHHHHHH
Confidence 666552 11 2234455556666555443
No 185
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.65 E-value=0.0024 Score=57.78 Aligned_cols=195 Identities=12% Similarity=0.065 Sum_probs=108.9
Q ss_pred CcchHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCH-hH---HHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHH
Q 007808 360 DLITWNTIISGLAMHGRGAGALSLFHEMKNAGEMPDG-IT---FIGILCACTHMGLVEEGLSYFQSMAMDYSIVPQIEHY 435 (589)
Q Consensus 360 ~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~-~~---~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 435 (589)
+...+-.....+...|++++|.+.|+++... .|+. .. ...++.++.+.+++++|...+++.++.++-.|+.. +
T Consensus 31 ~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~--yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~-~ 107 (243)
T PRK10866 31 PPSEIYATAQQKLQDGNWKQAITQLEALDNR--YPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNID-Y 107 (243)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchH-H
Confidence 3444444556667788888888888888874 3432 22 23456677888888888888888877655555542 1
Q ss_pred HHHHHHHHhcCCHHHHHHHHhhC-CC---CCCH-------HHHHHHHHHHhcCCCHHHHHHHHHHHHccCCCCCcchHHH
Q 007808 436 GCMVDLLARAGRLAEAVDFVKRM-PI---EADA-------VIWANLLGSCRVYKNVELAELALERLTELEPKNPANFVML 504 (589)
Q Consensus 436 ~~l~~~~~~~g~~~~A~~~~~~~-~~---~p~~-------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l 504 (589)
.....+++... .....+... .+ ..|. ..+..++.-|=.+.-..+|...+..+...- ...-...
T Consensus 108 a~Y~~g~~~~~---~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya~~A~~rl~~l~~~l---a~~e~~i 181 (243)
T PRK10866 108 VLYMRGLTNMA---LDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYTTDATKRLVFLKDRL---AKYELSV 181 (243)
T ss_pred HHHHHHHhhhh---cchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHH---HHHHHHH
Confidence 11222211100 000011111 00 0010 112222222222222333332222222110 1222366
Q ss_pred HHHHhhcCChHHHHHHHHHhhhCCCccCCccceeeeCCeeeeeccccCCCchHHHHHHHHHHHHcccCCCCcchHhhhhh
Q 007808 505 SNIYGDLGRWKDVARIKVAMRDTGFKKLPGCSSIEVNEVVMLGCLSRELDRKSIVRAEANMIKLLPQNNHPLTFIVVIFS 584 (589)
Q Consensus 505 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 584 (589)
+..|.+.|+|.-|+.-++.+.+.= ..-|..++++..+...|..+|..++|.+...+|..
T Consensus 182 a~~Y~~~~~y~AA~~r~~~v~~~Y---------------------p~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~~ 240 (243)
T PRK10866 182 AEYYTKRGAYVAVVNRVEQMLRDY---------------------PDTQATRDALPLMENAYRQLQLNAQADKVAKIIAA 240 (243)
T ss_pred HHHHHHcCchHHHHHHHHHHHHHC---------------------CCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHhc
Confidence 778999999999999888885211 13356778888899999999999999998888754
No 186
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.64 E-value=0.0032 Score=51.89 Aligned_cols=102 Identities=21% Similarity=0.308 Sum_probs=89.0
Q ss_pred HhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHhhC---CCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHccCCC--CC
Q 007808 424 MDYSIVPQIEHYGCMVDLLARAGRLAEAVDFVKRM---PIEADAVIWANLLGSCRVYKNVELAELALERLTELEPK--NP 498 (589)
Q Consensus 424 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~---~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~--~~ 498 (589)
++..+-|+...--.|..++...|+..+|...|++. ...-|......+.++....++...|...++.+.+-+|. .|
T Consensus 81 ~~~~~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~p 160 (251)
T COG4700 81 EELAIAPTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSP 160 (251)
T ss_pred HHHhhchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCC
Confidence 33355688888888999999999999999999987 35558888888889999999999999999999998875 57
Q ss_pred cchHHHHHHHhhcCChHHHHHHHHHhh
Q 007808 499 ANFVMLSNIYGDLGRWKDVARIKVAMR 525 (589)
Q Consensus 499 ~~~~~l~~~~~~~g~~~~A~~~~~~~~ 525 (589)
.....+++.|...|++++|+..++...
T Consensus 161 d~~Ll~aR~laa~g~~a~Aesafe~a~ 187 (251)
T COG4700 161 DGHLLFARTLAAQGKYADAESAFEVAI 187 (251)
T ss_pred CchHHHHHHHHhcCCchhHHHHHHHHH
Confidence 788889999999999999999999885
No 187
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.64 E-value=7.9e-05 Score=42.61 Aligned_cols=31 Identities=39% Similarity=0.657 Sum_probs=23.8
Q ss_pred chHHHHHHHHHhCCChHHHHHHHHHHHHCCC
Q 007808 362 ITWNTIISGLAMHGRGAGALSLFHEMKNAGE 392 (589)
Q Consensus 362 ~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~ 392 (589)
++|+.++++|++.|++++|.++|++|.+.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 3677888888888888888888888877663
No 188
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=97.63 E-value=0.00019 Score=64.28 Aligned_cols=98 Identities=12% Similarity=-0.033 Sum_probs=87.0
Q ss_pred CC-CHHHHHHHHHHHhcCCCHHHHHHHHHHHHccCCCCCcchHHHHHHHhhcC---ChHHHHHHHHHhhhCCCccCCccc
Q 007808 461 EA-DAVIWANLLGSCRVYKNVELAELALERLTELEPKNPANFVMLSNIYGDLG---RWKDVARIKVAMRDTGFKKLPGCS 536 (589)
Q Consensus 461 ~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~~~~~~~~~ 536 (589)
+| |...|..|...|...|+...|...|.++.++.|+|+..+..++.++..+. ...++..+++++.
T Consensus 152 nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al----------- 220 (287)
T COG4235 152 NPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQAL----------- 220 (287)
T ss_pred CCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHH-----------
Confidence 44 78899999999999999999999999999999999999999999977654 4678888999986
Q ss_pred eeeeCCeeeeeccccCCCchHHHHHHHHHHHHcccCCCCcchHhhh
Q 007808 537 SIEVNEVVMLGCLSRELDRKSIVRAEANMIKLLPQNNHPLTFIVVI 582 (589)
Q Consensus 537 ~~~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 582 (589)
.++|+|..+...|+-.+++-|+..+|+..-..+
T Consensus 221 -------------~~D~~~iral~lLA~~afe~g~~~~A~~~Wq~l 253 (287)
T COG4235 221 -------------ALDPANIRALSLLAFAAFEQGDYAEAAAAWQML 253 (287)
T ss_pred -------------hcCCccHHHHHHHHHHHHHcccHHHHHHHHHHH
Confidence 899999999999999999999999877655443
No 189
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.62 E-value=0.00042 Score=52.00 Aligned_cols=80 Identities=19% Similarity=0.120 Sum_probs=67.8
Q ss_pred HHHHHHHHHcCCChhHHHHHHHHhhhCCC-CCCcccHHHHHHHHhccC--------ChHHHHHHHHHHHHhCCCCchHHH
Q 007808 68 WNAMFNGYAQNEFHRTVVVLFTQMKKLDA-MPNCFTFPIVLKSCVKIN--------ALREGEELHCLVLKNGFRANIFVG 138 (589)
Q Consensus 68 ~~~ll~~~~~~~~~~~a~~~~~~m~~~~~-~p~~~~~~~ll~~~~~~~--------~~~~a~~~~~~~~~~~~~~~~~~~ 138 (589)
....|..+...+++.....+|+.+++.|+ .|+..+|+.++.+.++.. +.-....+|+.|+..+++|+..+|
T Consensus 28 ~i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etY 107 (120)
T PF08579_consen 28 QIDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETY 107 (120)
T ss_pred HHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHH
Confidence 34556667777999999999999999999 899999999999987653 234577899999999999999999
Q ss_pred hHHHHHHHc
Q 007808 139 TALIELYST 147 (589)
Q Consensus 139 ~~li~~~~~ 147 (589)
+.++..+.+
T Consensus 108 nivl~~Llk 116 (120)
T PF08579_consen 108 NIVLGSLLK 116 (120)
T ss_pred HHHHHHHHH
Confidence 999987654
No 190
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.60 E-value=0.1 Score=52.44 Aligned_cols=199 Identities=16% Similarity=0.137 Sum_probs=130.8
Q ss_pred CCCcccHHHHHHHHhccCChHHHHHHHHHHHHh-CCCC--------chHHHhHHHHHHHcCCChHHHHHHHccCCCCCee
Q 007808 97 MPNCFTFPIVLKSCVKINALREGEELHCLVLKN-GFRA--------NIFVGTALIELYSTGKAIEAAYKVFGEMDERNVV 167 (589)
Q Consensus 97 ~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~--------~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~ 167 (589)
.|.+..|..+.......-+++.|+..|-+...- |++. +...-.+=+. +-.|++++|++++-++..+|.
T Consensus 689 nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~--~~~g~feeaek~yld~drrDL- 765 (1189)
T KOG2041|consen 689 NPHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEIS--AFYGEFEEAEKLYLDADRRDL- 765 (1189)
T ss_pred CCchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHh--hhhcchhHhhhhhhccchhhh-
Confidence 588888988888777777777777776544221 1111 1111111222 225899999999988887765
Q ss_pred hHHHHHHHHHhCCCHHHHHHHHHhCCCC--C---hhHHHHHHHHHhcCCChHHHHHHhcccCCCChhhHHHHHHHHHhcC
Q 007808 168 VWTSMINGYISCGDIVSARCLFELAPER--D---VILWNTIVSGYIDVRNMIEARKLFDQMPKKDVISWNTMLSGYANNG 242 (589)
Q Consensus 168 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~--~---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~ 242 (589)
.|..+.+.|++-...++++..... | ...|+.+...++....|++|.+.+..-.. ....+.++.+..
T Consensus 766 ----Aielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~-----~e~~~ecly~le 836 (1189)
T KOG2041|consen 766 ----AIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGD-----TENQIECLYRLE 836 (1189)
T ss_pred ----hHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-----hHhHHHHHHHHH
Confidence 467788889999999999876543 1 25788899999999999999998876432 234566777777
Q ss_pred CHHHHHHHHhhCCCCCchhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHhcCChhHHHHHH
Q 007808 243 DVEECKRLFEEMPERNVFSWNGLIGGYANNGLFFEVLDAFKRMLTEGRVFPNDATIVTVLSACARLGALDFSKWVH 318 (589)
Q Consensus 243 ~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~ 318 (589)
++++.+.+-..+++ +......+...+...|..++|.+.|-+- + .|. ..+..|...+++.+|.++-
T Consensus 837 ~f~~LE~la~~Lpe-~s~llp~~a~mf~svGMC~qAV~a~Lr~---s--~pk-----aAv~tCv~LnQW~~avela 901 (1189)
T KOG2041|consen 837 LFGELEVLARTLPE-DSELLPVMADMFTSVGMCDQAVEAYLRR---S--LPK-----AAVHTCVELNQWGEAVELA 901 (1189)
T ss_pred hhhhHHHHHHhcCc-ccchHHHHHHHHHhhchHHHHHHHHHhc---c--CcH-----HHHHHHHHHHHHHHHHHHH
Confidence 77777777666665 3444556777788888888887765432 2 232 2344555666666665543
No 191
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.59 E-value=9.4e-05 Score=42.28 Aligned_cols=29 Identities=17% Similarity=0.493 Sum_probs=18.8
Q ss_pred cHHHHHHHHHcCCChhHHHHHHHHhhhCC
Q 007808 67 SWNAMFNGYAQNEFHRTVVVLFTQMKKLD 95 (589)
Q Consensus 67 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~ 95 (589)
+||.++++|++.|++++|.++|++|.+.|
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g 30 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERG 30 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence 56666666666666666666666666554
No 192
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=97.57 E-value=9.1e-05 Score=68.36 Aligned_cols=260 Identities=15% Similarity=0.094 Sum_probs=162.4
Q ss_pred HHHHhcCChhHHHHHHHHHHHcCCC---CChhHHHHHHHHHHhcCChHHHHHHHhhCC-------CC--CcchHHHHHHH
Q 007808 303 SACARLGALDFSKWVHVYAEYNGYQ---GNVCVGNALIDMYAKCGIIENAVDVFNSMD-------TK--DLITWNTIISG 370 (589)
Q Consensus 303 ~~~~~~~~~~~a~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-------~~--~~~~~~~l~~~ 370 (589)
.-+|+.|+......+|+.+++.|.. .-..+|..|..+|.-.+++++|++.-..-. .+ ...+...|...
T Consensus 25 ERLck~gdcraGv~ff~aA~qvGTeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGNt 104 (639)
T KOG1130|consen 25 ERLCKMGDCRAGVDFFKAALQVGTEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGNT 104 (639)
T ss_pred HHHHhccchhhhHHHHHHHHHhcchHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccccch
Confidence 3478999999999999999998743 224567778888888899999988653211 11 11223334455
Q ss_pred HHhCCChHHHHHHHHHH----HHCCCCC-CHhHHHHHHHHHhccCc--------------------HHHHHHHHHHhHH-
Q 007808 371 LAMHGRGAGALSLFHEM----KNAGEMP-DGITFIGILCACTHMGL--------------------VEEGLSYFQSMAM- 424 (589)
Q Consensus 371 ~~~~~~~~~A~~~~~~m----~~~~~~p-~~~~~~~l~~~~~~~g~--------------------~~~A~~~~~~~~~- 424 (589)
+--.|.+++|+-.-.+- .+.|-.. ....+..+...|...|+ ++.|.++|.+-++
T Consensus 105 lKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL~l 184 (639)
T KOG1130|consen 105 LKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMENLEL 184 (639)
T ss_pred hhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHHHHH
Confidence 55667777776544332 2222111 22344456666654443 4455555544221
Q ss_pred --hcCCC-CChHHHHHHHHHHHhcCCHHHHHHHHhhC-------CC-CCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHc-
Q 007808 425 --DYSIV-PQIEHYGCMVDLLARAGRLAEAVDFVKRM-------PI-EADAVIWANLLGSCRVYKNVELAELALERLTE- 492 (589)
Q Consensus 425 --~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-------~~-~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~- 492 (589)
+.|-. ..-..|..|.+.|.-.|+++.|+.+-+.- +. ......+..+.+++.-.|+++.|.+.|++.+.
T Consensus 185 ~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~L 264 (639)
T KOG1130|consen 185 SEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNL 264 (639)
T ss_pred HHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHH
Confidence 11111 11245667777888889999998765432 21 12345677788888899999999999998765
Q ss_pred ---cCCC--CCcchHHHHHHHhhcCChHHHHHHHHHhhhCCCccCCccceeeeCCeeeeeccccCCCchHHHHHHHHHHH
Q 007808 493 ---LEPK--NPANFVMLSNIYGDLGRWKDVARIKVAMRDTGFKKLPGCSSIEVNEVVMLGCLSRELDRKSIVRAEANMIK 567 (589)
Q Consensus 493 ---~~p~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~~~ 567 (589)
+... ....-++|++.|.-..++++|+.++.+=..-.-+ ++-.-...-++-+||+.|.
T Consensus 265 Aielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqe------------------L~DriGe~RacwSLgna~~ 326 (639)
T KOG1130|consen 265 AIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQE------------------LEDRIGELRACWSLGNAFN 326 (639)
T ss_pred HHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH------------------HHHhhhhHHHHHHHHHHHH
Confidence 3322 2445678999999999999999988765311100 0112234556777888888
Q ss_pred HcccCCCCcchHh
Q 007808 568 LLPQNNHPLTFIV 580 (589)
Q Consensus 568 ~~~~~~~~~~~~~ 580 (589)
.+|.+..|+.|..
T Consensus 327 alg~h~kAl~fae 339 (639)
T KOG1130|consen 327 ALGEHRKALYFAE 339 (639)
T ss_pred hhhhHHHHHHHHH
Confidence 8888877776654
No 193
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.57 E-value=0.11 Score=52.83 Aligned_cols=105 Identities=18% Similarity=0.232 Sum_probs=58.7
Q ss_pred HHHHHHHHhcCChHHHHHHHhhCCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCcHH
Q 007808 334 NALIDMYAKCGIIENAVDVFNSMDTKDLITWNTIISGLAMHGRGAGALSLFHEMKNAGEMPDGITFIGILCACTHMGLVE 413 (589)
Q Consensus 334 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~ 413 (589)
+-.+.-+...|+..+|.++-.+..-||-..|-.-+.+++..+++++-+++-+.+. ++.-|.....+|.+.|+.+
T Consensus 688 ~dTv~~li~~g~~k~a~ql~~~FkipdKr~~wLk~~aLa~~~kweeLekfAkskk------sPIGy~PFVe~c~~~~n~~ 761 (829)
T KOG2280|consen 688 HDTVTTLILIGQNKRAEQLKSDFKIPDKRLWWLKLTALADIKKWEELEKFAKSKK------SPIGYLPFVEACLKQGNKD 761 (829)
T ss_pred HHHHHHHHHccchHHHHHHHHhcCCcchhhHHHHHHHHHhhhhHHHHHHHHhccC------CCCCchhHHHHHHhcccHH
Confidence 3334444555666666666666666666666666666666666665444433221 1344555666666666666
Q ss_pred HHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHH
Q 007808 414 EGLSYFQSMAMDYSIVPQIEHYGCMVDLLARAGRLAEAVDF 454 (589)
Q Consensus 414 ~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 454 (589)
+|.+++-+.. +.. -.+.+|.+.|++.+|.+.
T Consensus 762 EA~KYiprv~---~l~-------ekv~ay~~~~~~~eAad~ 792 (829)
T KOG2280|consen 762 EAKKYIPRVG---GLQ-------EKVKAYLRVGDVKEAADL 792 (829)
T ss_pred HHhhhhhccC---ChH-------HHHHHHHHhccHHHHHHH
Confidence 6666655442 111 244566666666666554
No 194
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=97.56 E-value=0.08 Score=50.44 Aligned_cols=189 Identities=13% Similarity=0.089 Sum_probs=107.2
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHhhCC--CCCcch-------HHHHHHHHHh----CCChHHHHHHHHHHHHCCCCCCHh
Q 007808 331 CVGNALIDMYAKCGIIENAVDVFNSMD--TKDLIT-------WNTIISGLAM----HGRGAGALSLFHEMKNAGEMPDGI 397 (589)
Q Consensus 331 ~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~-------~~~l~~~~~~----~~~~~~A~~~~~~m~~~~~~p~~~ 397 (589)
.++..++....+.++...|...+.-+. +|+... -..+-+..+. .-+...=+.+|+.....+ .|..
T Consensus 299 ~~F~~~Ls~~Vk~~~T~~a~q~l~lL~~ldp~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~D--iDrq 376 (549)
T PF07079_consen 299 DRFGNLLSFKVKQVQTEEAKQYLALLKILDPRISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYD--IDRQ 376 (549)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHhcCCcchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhc--ccHH
Confidence 345556666666677666666655443 232211 1112222221 112233455555555532 2322
Q ss_pred H-HHHHH---HHHhccCc-HHHHHHHHHHhHHhcCCCCChHHHHHHH----HHHHhc---CCHH---HHHHHHhhCCCCC
Q 007808 398 T-FIGIL---CACTHMGL-VEEGLSYFQSMAMDYSIVPQIEHYGCMV----DLLARA---GRLA---EAVDFVKRMPIEA 462 (589)
Q Consensus 398 ~-~~~l~---~~~~~~g~-~~~A~~~~~~~~~~~~~~~~~~~~~~l~----~~~~~~---g~~~---~A~~~~~~~~~~p 462 (589)
- ...|+ .-+-+.|. -++|+.+++.+.+-. +-|...-|.+. ..|.++ ..+. +-..++++.++.|
T Consensus 377 QLvh~L~~~Ak~lW~~g~~dekalnLLk~il~ft--~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~ 454 (549)
T PF07079_consen 377 QLVHYLVFGAKHLWEIGQCDEKALNLLKLILQFT--NYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTP 454 (549)
T ss_pred HHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhc--cccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCc
Confidence 1 12222 22344454 788888888776421 22333333221 222221 1111 2234455556555
Q ss_pred ----CHHHHHHHHHH--HhcCCCHHHHHHHHHHHHccCCCCCcchHHHHHHHhhcCChHHHHHHHHHh
Q 007808 463 ----DAVIWANLLGS--CRVYKNVELAELALERLTELEPKNPANFVMLSNIYGDLGRWKDVARIKVAM 524 (589)
Q Consensus 463 ----~~~~~~~l~~~--~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 524 (589)
+...-|.+..+ +..+|++.++.-.-.-+.++.| ++.+|..+|-++....++++|..++.++
T Consensus 455 i~i~e~eian~LaDAEyLysqgey~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l~~L 521 (549)
T PF07079_consen 455 ITISEEEIANFLADAEYLYSQGEYHKCYLYSSWLTKIAP-SPQAYRLLGLCLMENKRYQEAWEYLQKL 521 (549)
T ss_pred ccccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHHHHhC
Confidence 33444555544 5789999999999999999999 5999999999999999999999999887
No 195
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.56 E-value=0.00018 Score=50.66 Aligned_cols=65 Identities=18% Similarity=0.277 Sum_probs=51.9
Q ss_pred ChHHHHHHHHHHHhcCCHHHHHHHHhhC-CCCC-CHHHHHHHHHHHhcCC-CHHHHHHHHHHHHccCC
Q 007808 431 QIEHYGCMVDLLARAGRLAEAVDFVKRM-PIEA-DAVIWANLLGSCRVYK-NVELAELALERLTELEP 495 (589)
Q Consensus 431 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~p 495 (589)
++..|..+...+...|++++|+..|++. ...| +...|..+..++...| ++++|++.++++++++|
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 3566778888888888888888888887 4455 4566777778888888 68999999999998887
No 196
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=97.52 E-value=0.00015 Score=45.45 Aligned_cols=43 Identities=26% Similarity=0.336 Sum_probs=39.1
Q ss_pred CcchHHHHHHHhhcCChHHHHHHHHHhhhCCCccCCccceeeeCCeeeeeccccCCCchHHHHHHHH
Q 007808 498 PANFVMLSNIYGDLGRWKDVARIKVAMRDTGFKKLPGCSSIEVNEVVMLGCLSRELDRKSIVRAEAN 564 (589)
Q Consensus 498 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~ 564 (589)
|.++..++..|.+.|++++|+++++++. +.+|+|+.++..|+.
T Consensus 1 p~~~~~la~~~~~~G~~~~A~~~~~~~l------------------------~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 1 PAAWLALARAYRRLGQPDEAERLLRRAL------------------------ALDPDDPEAWRALAQ 43 (44)
T ss_pred CHHHHHHHHHHHHcCCHHHHHHHHHHHH------------------------HHCcCCHHHHHHhhh
Confidence 4578899999999999999999999996 889999999998875
No 197
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.51 E-value=0.00011 Score=51.70 Aligned_cols=60 Identities=13% Similarity=0.205 Sum_probs=33.0
Q ss_pred ccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHhhC-CCCCCHHHHHH
Q 007808 408 HMGLVEEGLSYFQSMAMDYSIVPQIEHYGCMVDLLARAGRLAEAVDFVKRM-PIEADAVIWAN 469 (589)
Q Consensus 408 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~ 469 (589)
..|++++|+++|+++.... +-+...+..++.+|.+.|++++|.++++++ ...|+...|..
T Consensus 3 ~~~~~~~A~~~~~~~l~~~--p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~ 63 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQRN--PDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQ 63 (68)
T ss_dssp HTTHHHHHHHHHHHHHHHT--TTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHH
Confidence 4566666666666665431 224555555666666666666666666666 34455444433
No 198
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.47 E-value=0.00049 Score=53.85 Aligned_cols=86 Identities=23% Similarity=0.174 Sum_probs=56.0
Q ss_pred HHHHHHhcCCHHHHHHHHhhC---CCCCC--HHHHHHHHHHHhcCCCHHHHHHHHHHHHccCCC---CCcchHHHHHHHh
Q 007808 438 MVDLLARAGRLAEAVDFVKRM---PIEAD--AVIWANLLGSCRVYKNVELAELALERLTELEPK---NPANFVMLSNIYG 509 (589)
Q Consensus 438 l~~~~~~~g~~~~A~~~~~~~---~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~---~~~~~~~l~~~~~ 509 (589)
+..++-..|+.++|+.+|++. +.... ...+-.+...+...|++++|..++++.+...|+ +......++.++.
T Consensus 7 ~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~ 86 (120)
T PF12688_consen 7 LAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALY 86 (120)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHH
Confidence 455666777777777777765 21211 223444556677777777777777777776666 5556666667777
Q ss_pred hcCChHHHHHHHHH
Q 007808 510 DLGRWKDVARIKVA 523 (589)
Q Consensus 510 ~~g~~~~A~~~~~~ 523 (589)
..|++++|++.+-.
T Consensus 87 ~~gr~~eAl~~~l~ 100 (120)
T PF12688_consen 87 NLGRPKEALEWLLE 100 (120)
T ss_pred HCCCHHHHHHHHHH
Confidence 77777777776543
No 199
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.45 E-value=0.16 Score=51.13 Aligned_cols=233 Identities=13% Similarity=0.084 Sum_probs=141.9
Q ss_pred CCchHHHhHHHHHHHcCCChHHHHHHHccCCC-CCeehHHHH----------HHHHHhCCCHHHHHHHHHhCCCCChhHH
Q 007808 132 RANIFVGTALIELYSTGKAIEAAYKVFGEMDE-RNVVVWTSM----------INGYISCGDIVSARCLFELAPERDVILW 200 (589)
Q Consensus 132 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~l----------~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 200 (589)
.|.+..|..|.......-.++-|+..|-+... +++.....| ...-+--|++++|.++|-.+-.+|.
T Consensus 689 nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~~~~g~feeaek~yld~drrDL--- 765 (1189)
T KOG2041|consen 689 NPHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEISAFYGEFEEAEKLYLDADRRDL--- 765 (1189)
T ss_pred CCchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHhhhhcchhHhhhhhhccchhhh---
Confidence 46778888888777777777888877766654 222111111 1222335788888888887766654
Q ss_pred HHHHHHHhcCCChHHHHHHhcccCC-----CChhhHHHHHHHHHhcCCHHHHHHHHhhCCCCCchhHHHHHHHHHhCCCh
Q 007808 201 NTIVSGYIDVRNMIEARKLFDQMPK-----KDVISWNTMLSGYANNGDVEECKRLFEEMPERNVFSWNGLIGGYANNGLF 275 (589)
Q Consensus 201 ~~l~~~~~~~g~~~~a~~~~~~~~~-----~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 275 (589)
.+..+.+.|+|-.+.++++.--. .-...|+.+.+.+.....|++|.+.|..... -...+.++.+..++
T Consensus 766 --Aielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~-----~e~~~ecly~le~f 838 (1189)
T KOG2041|consen 766 --AIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGD-----TENQIECLYRLELF 838 (1189)
T ss_pred --hHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-----hHhHHHHHHHHHhh
Confidence 34556677888888887765432 1235688888888888888888888876553 12245566666555
Q ss_pred HHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHhh
Q 007808 276 FEVLDAFKRMLTEGRVFPNDATIVTVLSACARLGALDFSKWVHVYAEYNGYQGNVCVGNALIDMYAKCGIIENAVDVFNS 355 (589)
Q Consensus 276 ~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 355 (589)
++-..+... ++-+....-.+..++.+.|--++|.+.+-+ .+.+ .+-+..+...++|.+|.++-++
T Consensus 839 ~~LE~la~~------Lpe~s~llp~~a~mf~svGMC~qAV~a~Lr---~s~p------kaAv~tCv~LnQW~~avelaq~ 903 (1189)
T KOG2041|consen 839 GELEVLART------LPEDSELLPVMADMFTSVGMCDQAVEAYLR---RSLP------KAAVHTCVELNQWGEAVELAQR 903 (1189)
T ss_pred hhHHHHHHh------cCcccchHHHHHHHHHhhchHHHHHHHHHh---ccCc------HHHHHHHHHHHHHHHHHHHHHh
Confidence 554444433 333444555666777788877777665533 2212 2244556677788888888777
Q ss_pred CCCCCcchHHH--------------HHHHHHhCCChHHHHHHHHHHHH
Q 007808 356 MDTKDLITWNT--------------IISGLAMHGRGAGALSLFHEMKN 389 (589)
Q Consensus 356 ~~~~~~~~~~~--------------l~~~~~~~~~~~~A~~~~~~m~~ 389 (589)
..-|.+.+.-+ -|..+.+.|+.-.|-+++.+|.+
T Consensus 904 ~~l~qv~tliak~aaqll~~~~~~eaIe~~Rka~~~~daarll~qmae 951 (1189)
T KOG2041|consen 904 FQLPQVQTLIAKQAAQLLADANHMEAIEKDRKAGRHLDAARLLSQMAE 951 (1189)
T ss_pred ccchhHHHHHHHHHHHHHhhcchHHHHHHhhhcccchhHHHHHHHHhH
Confidence 66554432211 12334445555556666666654
No 200
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.43 E-value=0.0051 Score=48.19 Aligned_cols=93 Identities=16% Similarity=0.198 Sum_probs=67.5
Q ss_pred HHHHHHHhCCChHHHHHHHHHHHHCCCCCC--HhHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCC-ChHHHHHHHHHH
Q 007808 366 TIISGLAMHGRGAGALSLFHEMKNAGEMPD--GITFIGILCACTHMGLVEEGLSYFQSMAMDYSIVP-QIEHYGCMVDLL 442 (589)
Q Consensus 366 ~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~~l~~~~ 442 (589)
.+..++-..|+.++|+.+|++....|+... ...+..+..++...|++++|..++++....+.-.+ +......+.-++
T Consensus 6 ~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L 85 (120)
T PF12688_consen 6 ELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALAL 85 (120)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHH
Confidence 345667788999999999999999886654 34566778888999999999999998876532111 222333445677
Q ss_pred HhcCCHHHHHHHHhhC
Q 007808 443 ARAGRLAEAVDFVKRM 458 (589)
Q Consensus 443 ~~~g~~~~A~~~~~~~ 458 (589)
...|+.++|++.+-..
T Consensus 86 ~~~gr~~eAl~~~l~~ 101 (120)
T PF12688_consen 86 YNLGRPKEALEWLLEA 101 (120)
T ss_pred HHCCCHHHHHHHHHHH
Confidence 8889999998877554
No 201
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.42 E-value=0.0015 Score=63.14 Aligned_cols=117 Identities=8% Similarity=0.073 Sum_probs=64.5
Q ss_pred CCCccchHHHHHHHHccCChhHHHHHhhcCCC-C-----CcccHHHHHHHHHcCCChhHHHHHHHHhhhCCCCCCcccHH
Q 007808 31 EKSDYITPRIITACAQLKQMTYARKMFDKITD-Q-----NVVSWNAMFNGYAQNEFHRTVVVLFTQMKKLDAMPNCFTFP 104 (589)
Q Consensus 31 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-~-----~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~ 104 (589)
+.+.......++.+....+++.+..++-+... | -..+..++++.|...|..+.+++++..=...|+-||..+++
T Consensus 63 ~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n 142 (429)
T PF10037_consen 63 PVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFN 142 (429)
T ss_pred CCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHH
Confidence 33444444555555555555555555544432 1 12244466666666666666666666666666666666666
Q ss_pred HHHHHHhccCChHHHHHHHHHHHHhCCCCchHHHhHHHHHHHc
Q 007808 105 IVLKSCVKINALREGEELHCLVLKNGFRANIFVGTALIELYST 147 (589)
Q Consensus 105 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 147 (589)
.||..+.+.|++..|.++..+|...+...+..++..-+.+|.+
T Consensus 143 ~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~ 185 (429)
T PF10037_consen 143 LLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYK 185 (429)
T ss_pred HHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHH
Confidence 6666666666666666666666555544444444433333333
No 202
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.40 E-value=0.0033 Score=58.44 Aligned_cols=131 Identities=12% Similarity=0.146 Sum_probs=82.5
Q ss_pred hHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHhHHHHHHHH-HhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHH
Q 007808 363 TWNTIISGLAMHGRGAGALSLFHEMKNAGEMPDGITFIGILCA-CTHMGLVEEGLSYFQSMAMDYSIVPQIEHYGCMVDL 441 (589)
Q Consensus 363 ~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~-~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~ 441 (589)
+|..++....+.+..+.|..+|.+.++.+ ..+...|...+.. +...++.+.|.++|+...+.+ ..+...|...++.
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f--~~~~~~~~~Y~~~ 79 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKF--PSDPDFWLEYLDF 79 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHH--TT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHC--CCCHHHHHHHHHH
Confidence 46666666667677777777777777432 2233344443333 333466666888888777643 4556667777777
Q ss_pred HHhcCCHHHHHHHHhhC-CCCCCH----HHHHHHHHHHhcCCCHHHHHHHHHHHHccCCC
Q 007808 442 LARAGRLAEAVDFVKRM-PIEADA----VIWANLLGSCRVYKNVELAELALERLTELEPK 496 (589)
Q Consensus 442 ~~~~g~~~~A~~~~~~~-~~~p~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 496 (589)
+.+.|+.+.|..+|++. ..-|.. ..|...+..=.+.|+.+....+.+++.+.-|.
T Consensus 80 l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~ 139 (280)
T PF05843_consen 80 LIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPE 139 (280)
T ss_dssp HHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTT
T ss_pred HHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhh
Confidence 77888888888888776 222322 46777776667778888888888887776665
No 203
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=97.38 E-value=0.14 Score=48.86 Aligned_cols=132 Identities=12% Similarity=0.130 Sum_probs=76.0
Q ss_pred HHHccCChhHHHHHhhcCCC---CC------cccHHHHHHHHHcCCChhHHHHHHHHhhhCCCCCCcccHHHHHHHH--h
Q 007808 43 ACAQLKQMTYARKMFDKITD---QN------VVSWNAMFNGYAQNEFHRTVVVLFTQMKKLDAMPNCFTFPIVLKSC--V 111 (589)
Q Consensus 43 ~~~~~~~~~~A~~~~~~~~~---~~------~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~--~ 111 (589)
.+.+.+++.+|.++|.++-+ .+ ...-+.++++|... +.+.....+....+. .| ...|..+..++ .
T Consensus 15 ~Lqkq~~~~esEkifskI~~e~~~~~f~lkeEvl~grilnAffl~-nld~Me~~l~~l~~~--~~-~s~~l~LF~~L~~Y 90 (549)
T PF07079_consen 15 ILQKQKKFQESEKIFSKIYDEKESSPFLLKEEVLGGRILNAFFLN-NLDLMEKQLMELRQQ--FG-KSAYLPLFKALVAY 90 (549)
T ss_pred HHHHHhhhhHHHHHHHHHHHHhhcchHHHHHHHHhhHHHHHHHHh-hHHHHHHHHHHHHHh--cC-CchHHHHHHHHHHH
Confidence 34567788888888877654 11 12344566666543 444444444444443 23 34455555444 3
Q ss_pred ccCChHHHHHHHHHHHHh--CCC------------CchHHHhHHHHHHHcCCChHHHHHHHccCCC--------CCeehH
Q 007808 112 KINALREGEELHCLVLKN--GFR------------ANIFVGTALIELYSTGKAIEAAYKVFGEMDE--------RNVVVW 169 (589)
Q Consensus 112 ~~~~~~~a~~~~~~~~~~--~~~------------~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--------~~~~~~ 169 (589)
+.+++.+|.+.+....++ +.. +|-..-+..+..+...|++.++..+++++.+ -+..+|
T Consensus 91 ~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~y 170 (549)
T PF07079_consen 91 KQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMY 170 (549)
T ss_pred HhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHH
Confidence 667788888777766554 222 1222334556677778888888888877753 355666
Q ss_pred HHHHHHHHh
Q 007808 170 TSMINGYIS 178 (589)
Q Consensus 170 ~~l~~~~~~ 178 (589)
+.++-.+.+
T Consensus 171 d~~vlmlsr 179 (549)
T PF07079_consen 171 DRAVLMLSR 179 (549)
T ss_pred HHHHHHHhH
Confidence 665444443
No 204
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=97.37 E-value=0.00067 Score=64.84 Aligned_cols=96 Identities=13% Similarity=0.034 Sum_probs=57.3
Q ss_pred ChHHHHHHHHHHHhcCCHHHHHHHHhhC-CCCCCHH----HHHHHHHHHhcCCCHHHHHHHHHHHHccCCCCCcchHHHH
Q 007808 431 QIEHYGCMVDLLARAGRLAEAVDFVKRM-PIEADAV----IWANLLGSCRVYKNVELAELALERLTELEPKNPANFVMLS 505 (589)
Q Consensus 431 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~----~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~ 505 (589)
+...++.+..+|.+.|++++|+..|++. .+.|+.. .|..+..+|...|+.++|++.+++++++.+. .|..+.
T Consensus 74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALelsn~---~f~~i~ 150 (453)
T PLN03098 74 TAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRDYNL---KFSTIL 150 (453)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcch---hHHHHH
Confidence 3566777777777777777777777775 5566532 4667777777777777777777777776321 121111
Q ss_pred H--HHhhcCChHHHHHHHHHhhhCCC
Q 007808 506 N--IYGDLGRWKDVARIKVAMRDTGF 529 (589)
Q Consensus 506 ~--~~~~~g~~~~A~~~~~~~~~~~~ 529 (589)
. .+....+.++..++++.+.+.|.
T Consensus 151 ~DpdL~plR~~pef~eLlee~rk~G~ 176 (453)
T PLN03098 151 NDPDLAPFRASPEFKELQEEARKGGE 176 (453)
T ss_pred hCcchhhhcccHHHHHHHHHHHHhCC
Confidence 1 11122334455666666666554
No 205
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.35 E-value=0.0035 Score=47.17 Aligned_cols=79 Identities=15% Similarity=0.187 Sum_probs=62.2
Q ss_pred HHHHHHHHhCCChHHHHHHHHHHHHCCC-CCCHhHHHHHHHHHhccC--------cHHHHHHHHHHhHHhcCCCCChHHH
Q 007808 365 NTIISGLAMHGRGAGALSLFHEMKNAGE-MPDGITFIGILCACTHMG--------LVEEGLSYFQSMAMDYSIVPQIEHY 435 (589)
Q Consensus 365 ~~l~~~~~~~~~~~~A~~~~~~m~~~~~-~p~~~~~~~l~~~~~~~g--------~~~~A~~~~~~~~~~~~~~~~~~~~ 435 (589)
...|..+...+++.....+|+.+++.|+ .|+..+|+.++.+..+.. ++-..+.+|+.++.. +++|+..+|
T Consensus 29 i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~-~lKP~~etY 107 (120)
T PF08579_consen 29 IDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSN-KLKPNDETY 107 (120)
T ss_pred HHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHh-ccCCcHHHH
Confidence 3456666677999999999999999999 899999999998765432 345667788888655 788999999
Q ss_pred HHHHHHHHh
Q 007808 436 GCMVDLLAR 444 (589)
Q Consensus 436 ~~l~~~~~~ 444 (589)
+.++..+.+
T Consensus 108 nivl~~Llk 116 (120)
T PF08579_consen 108 NIVLGSLLK 116 (120)
T ss_pred HHHHHHHHH
Confidence 988877765
No 206
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=97.35 E-value=0.023 Score=53.86 Aligned_cols=159 Identities=17% Similarity=0.099 Sum_probs=99.5
Q ss_pred HHHHHHHhcCChHHHHHHHhhCCCC-------CcchHHHHHHHHHh---CCChHHHHHHHHHHHHCCCCCCHhHHHHHHH
Q 007808 335 ALIDMYAKCGIIENAVDVFNSMDTK-------DLITWNTIISGLAM---HGRGAGALSLFHEMKNAGEMPDGITFIGILC 404 (589)
Q Consensus 335 ~l~~~~~~~g~~~~A~~~~~~~~~~-------~~~~~~~l~~~~~~---~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~ 404 (589)
.++-.|....+++..+++.+.+... ....-...+-++.+ .|+.++|++++..+....-.+++.+|..+.+
T Consensus 146 ~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GR 225 (374)
T PF13281_consen 146 NLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGR 225 (374)
T ss_pred HHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHH
Confidence 4455577777777777777777643 12222334455666 7888889998888666555777778877776
Q ss_pred HHhc---------cCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHH----HHHHHH---hh-C------CCC
Q 007808 405 ACTH---------MGLVEEGLSYFQSMAMDYSIVPQIEHYGCMVDLLARAGRLA----EAVDFV---KR-M------PIE 461 (589)
Q Consensus 405 ~~~~---------~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~----~A~~~~---~~-~------~~~ 461 (589)
.|-. ....++|...|.+.- .+.|+..+--.++..+.-.|... +..++- .. . ...
T Consensus 226 IyKD~~~~s~~~d~~~ldkAi~~Y~kgF---e~~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~~ 302 (374)
T PF13281_consen 226 IYKDLFLESNFTDRESLDKAIEWYRKGF---EIEPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEKM 302 (374)
T ss_pred HHHHHHHHcCccchHHHHHHHHHHHHHH---cCCccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhcccccc
Confidence 6532 234677777776554 44565443333444444444321 222222 11 1 123
Q ss_pred CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHccCCC
Q 007808 462 ADAVIWANLLGSCRVYKNVELAELALERLTELEPK 496 (589)
Q Consensus 462 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 496 (589)
.+...+.+++.++.-.|++++|.+.++++.++.|.
T Consensus 303 ~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~ 337 (374)
T PF13281_consen 303 QDYWDVATLLEASVLAGDYEKAIQAAEKAFKLKPP 337 (374)
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCc
Confidence 45666677888888999999999999999999876
No 207
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.31 E-value=0.0024 Score=59.37 Aligned_cols=128 Identities=13% Similarity=0.134 Sum_probs=99.1
Q ss_pred hHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHh-cCCHHHHHHHHhhC--CCCCCHHHHHHHHHH
Q 007808 397 ITFIGILCACTHMGLVEEGLSYFQSMAMDYSIVPQIEHYGCMVDLLAR-AGRLAEAVDFVKRM--PIEADAVIWANLLGS 473 (589)
Q Consensus 397 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~ 473 (589)
..|..++....+.+..+.|..+|.++++. -..+..+|...+..-.. .++.+.|.++|+.+ ....+...|...+.-
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~--~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~ 79 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKD--KRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDF 79 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCC--CCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcC--CCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Confidence 35778888888999999999999999743 22345556655555344 56666799999998 355677889999999
Q ss_pred HhcCCCHHHHHHHHHHHHccCCCCC---cchHHHHHHHhhcCChHHHHHHHHHhhh
Q 007808 474 CRVYKNVELAELALERLTELEPKNP---ANFVMLSNIYGDLGRWKDVARIKVAMRD 526 (589)
Q Consensus 474 ~~~~g~~~~A~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 526 (589)
+...|+.+.|..+|++++..-|.+. ..|...++.-.+.|+++.+.++.+++.+
T Consensus 80 l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~ 135 (280)
T PF05843_consen 80 LIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEE 135 (280)
T ss_dssp HHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHH
T ss_pred HHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 9999999999999999999766533 4888899999999999999999988864
No 208
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=97.28 E-value=0.0003 Score=44.04 Aligned_cols=42 Identities=26% Similarity=0.438 Sum_probs=37.4
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHccCCCCCcchHHHHH
Q 007808 465 VIWANLLGSCRVYKNVELAELALERLTELEPKNPANFVMLSN 506 (589)
Q Consensus 465 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~ 506 (589)
.++..+...|...|++++|++.|+++++.+|+|+.++..|+.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 356778899999999999999999999999999998888765
No 209
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.28 E-value=0.0044 Score=60.02 Aligned_cols=108 Identities=11% Similarity=0.075 Sum_probs=61.7
Q ss_pred CChhHHHHHHHHHHhcCChHHHHHHHhhCCC-C-----CcchHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHhHHHH
Q 007808 328 GNVCVGNALIDMYAKCGIIENAVDVFNSMDT-K-----DLITWNTIISGLAMHGRGAGALSLFHEMKNAGEMPDGITFIG 401 (589)
Q Consensus 328 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~-----~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ 401 (589)
.+......+++......+++.+..++.+... | ...+..+++..|.+.|..++++.+++.=...|+-||..+++.
T Consensus 64 vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n~ 143 (429)
T PF10037_consen 64 VSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFNL 143 (429)
T ss_pred CcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHHH
Confidence 3343444444444444555555555554432 1 223455666666666667777777666666677777777777
Q ss_pred HHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHH
Q 007808 402 ILCACTHMGLVEEGLSYFQSMAMDYSIVPQIEHYG 436 (589)
Q Consensus 402 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 436 (589)
|+..+.+.|++..|.++...|... ....+..++.
T Consensus 144 Lmd~fl~~~~~~~A~~V~~~~~lQ-e~~~~~~t~~ 177 (429)
T PF10037_consen 144 LMDHFLKKGNYKSAAKVATEMMLQ-EEFDNPSTQA 177 (429)
T ss_pred HHHHHhhcccHHHHHHHHHHHHHh-hccCCchHHH
Confidence 777777777777776666655433 3333333433
No 210
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=97.27 E-value=0.00065 Score=48.41 Aligned_cols=64 Identities=22% Similarity=0.315 Sum_probs=50.1
Q ss_pred HHHHHhcCCHHHHHHHHhhC-CCCC-CHHHHHHHHHHHhcCCCHHHHHHHHHHHHccCCCCCcchH
Q 007808 439 VDLLARAGRLAEAVDFVKRM-PIEA-DAVIWANLLGSCRVYKNVELAELALERLTELEPKNPANFV 502 (589)
Q Consensus 439 ~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ 502 (589)
...|.+.+++++|+++++++ ...| +...+.....++.+.|++++|.+.++++++..|+++....
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~ 67 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARA 67 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHH
Confidence 35678889999999998887 4455 4556666778888999999999999999999998665443
No 211
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=97.26 E-value=0.17 Score=47.34 Aligned_cols=243 Identities=12% Similarity=0.064 Sum_probs=135.8
Q ss_pred cCCChHHHHHHhcccCC-CChhhH--HHHHHHHHhcCCHHHHHHHHhhCCC--CC-chhHHHHHHHHHhCCChHHHHHHH
Q 007808 209 DVRNMIEARKLFDQMPK-KDVISW--NTMLSGYANNGDVEECKRLFEEMPE--RN-VFSWNGLIGGYANNGLFFEVLDAF 282 (589)
Q Consensus 209 ~~g~~~~a~~~~~~~~~-~~~~~~--~~l~~~~~~~~~~~~A~~~~~~~~~--~~-~~~~~~l~~~~~~~g~~~~A~~~~ 282 (589)
-.|+++.|.+-|+.|.. |..... ..|.-...+.|..+.|...-+..-. |. ...+...+...+..|+|+.|++++
T Consensus 132 ~eG~~~~Ar~kfeAMl~dPEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLv 211 (531)
T COG3898 132 LEGDYEDARKKFEAMLDDPETRLLGLRGLYLEAQRLGAREAARHYAERAAEKAPQLPWAARATLEARCAAGDWDGALKLV 211 (531)
T ss_pred hcCchHHHHHHHHHHhcChHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhccCCchHHHHHHHHHHhcCChHHHHHHH
Confidence 45777777777777765 333221 2222333456777777776666554 22 345677788888888888888888
Q ss_pred HHHHHcCCCCCcHHH--HHHHHHHH---HhcCChhHHHHHHHHHHHcCCCCCh-hHHHHHHHHHHhcCChHHHHHHHhhC
Q 007808 283 KRMLTEGRVFPNDAT--IVTVLSAC---ARLGALDFSKWVHVYAEYNGYQGNV-CVGNALIDMYAKCGIIENAVDVFNSM 356 (589)
Q Consensus 283 ~~~~~~~~~~p~~~~--~~~l~~~~---~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~ 356 (589)
+.-.....+.++..- -..++.+- .-..+...|...-.+..+. .|+. ..-..-..++.+.|+..++-.+++.+
T Consensus 212 d~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~KL--~pdlvPaav~AAralf~d~~~rKg~~ilE~a 289 (531)
T COG3898 212 DAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDALEANKL--APDLVPAAVVAARALFRDGNLRKGSKILETA 289 (531)
T ss_pred HHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhc--CCccchHHHHHHHHHHhccchhhhhhHHHHH
Confidence 776665434454332 11222221 1122344444444444433 2322 12223345677777777777777777
Q ss_pred CCCCcchHHHHHHHHHhCCChHHHHHHHHHHHH-CCCCC-CHhHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHH
Q 007808 357 DTKDLITWNTIISGLAMHGRGAGALSLFHEMKN-AGEMP-DGITFIGILCACTHMGLVEEGLSYFQSMAMDYSIVPQIEH 434 (589)
Q Consensus 357 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~-~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 434 (589)
.+..++.--..+..+.+.|+ .++.-+++..+ ..++| +..+...+..+-...|++..|..--+... ...|....
T Consensus 290 WK~ePHP~ia~lY~~ar~gd--ta~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~---r~~pres~ 364 (531)
T COG3898 290 WKAEPHPDIALLYVRARSGD--TALDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAA---REAPRESA 364 (531)
T ss_pred HhcCCChHHHHHHHHhcCCC--cHHHHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHh---hhCchhhH
Confidence 65444433333334444444 34444444332 12445 34555666667777777777776655554 44577777
Q ss_pred HHHHHHHHHh-cCCHHHHHHHHhhC
Q 007808 435 YGCMVDLLAR-AGRLAEAVDFVKRM 458 (589)
Q Consensus 435 ~~~l~~~~~~-~g~~~~A~~~~~~~ 458 (589)
|..|.+.-.- .|+-.++...+-+.
T Consensus 365 ~lLlAdIeeAetGDqg~vR~wlAqa 389 (531)
T COG3898 365 YLLLADIEEAETGDQGKVRQWLAQA 389 (531)
T ss_pred HHHHHHHHhhccCchHHHHHHHHHH
Confidence 7766665543 37777777776665
No 212
>PRK11906 transcriptional regulator; Provisional
Probab=97.25 E-value=0.0073 Score=58.08 Aligned_cols=65 Identities=12% Similarity=0.093 Sum_probs=29.1
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHhhC-CCCCCH-HHHHHHHHHHhcCCCHHHHHHHHHHHHccCCC
Q 007808 432 IEHYGCMVDLLARAGRLAEAVDFVKRM-PIEADA-VIWANLLGSCRVYKNVELAELALERLTELEPK 496 (589)
Q Consensus 432 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 496 (589)
+.....+..++.-.++++.|...|++. ...||. ..|......+.-.|+.++|.+.++++++++|.
T Consensus 338 a~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~ 404 (458)
T PRK11906 338 GKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPR 404 (458)
T ss_pred HHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCch
Confidence 333333444444444455555555554 233432 22333333334455555555555555555554
No 213
>PRK15331 chaperone protein SicA; Provisional
Probab=97.25 E-value=0.00049 Score=56.13 Aligned_cols=84 Identities=10% Similarity=-0.049 Sum_probs=70.8
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHccCCCCCcchHHHHHHHhhcCChHHHHHHHHHhhhCCCccCCccceeeeCCeeeeecc
Q 007808 470 LLGSCRVYKNVELAELALERLTELEPKNPANFVMLSNIYGDLGRWKDVARIKVAMRDTGFKKLPGCSSIEVNEVVMLGCL 549 (589)
Q Consensus 470 l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 549 (589)
...-+...|++++|+.+|+-+.-.+|.++..+..|+.++...|++++|+..|....
T Consensus 43 ~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~------------------------ 98 (165)
T PRK15331 43 HAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAF------------------------ 98 (165)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------------
Confidence 33446799999999999999999999999999999999999999999999998875
Q ss_pred ccCCCchHHHHHHHHHHHHcccCCCCcc
Q 007808 550 SRELDRKSIVRAEANMIKLLPQNNHPLT 577 (589)
Q Consensus 550 ~~~p~~~~~~~~l~~~~~~~~~~~~~~~ 577 (589)
.++++||....+.|.-|..+|+...|..
T Consensus 99 ~l~~~dp~p~f~agqC~l~l~~~~~A~~ 126 (165)
T PRK15331 99 TLLKNDYRPVFFTGQCQLLMRKAAKARQ 126 (165)
T ss_pred HcccCCCCccchHHHHHHHhCCHHHHHH
Confidence 4566777777777777777777766654
No 214
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=97.21 E-value=0.28 Score=48.78 Aligned_cols=181 Identities=13% Similarity=0.081 Sum_probs=120.7
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHhhCCCC---CcchHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHhHHHHHHHH
Q 007808 329 NVCVGNALIDMYAKCGIIENAVDVFNSMDTK---DLITWNTIISGLAMHGRGAGALSLFHEMKNAGEMPDGITFIGILCA 405 (589)
Q Consensus 329 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~ 405 (589)
+...|...+..-...|+.+.+.-+|++..-| -...|-..+.-....|+.+-|..++....+-.++-.+.+-..-...
T Consensus 296 ql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f 375 (577)
T KOG1258|consen 296 QLKNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEARF 375 (577)
T ss_pred HHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHH
Confidence 4566777777788889999998888887754 2234555555555558888888888877765433333333333334
Q ss_pred HhccCcHHHHHHHHHHhHHhcCCCCCh-HHHHHHHHHHHhcCCHHHHH---HHHhhC-CCCCCHHHHHHHH-----HHHh
Q 007808 406 CTHMGLVEEGLSYFQSMAMDYSIVPQI-EHYGCMVDLLARAGRLAEAV---DFVKRM-PIEADAVIWANLL-----GSCR 475 (589)
Q Consensus 406 ~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~---~~~~~~-~~~p~~~~~~~l~-----~~~~ 475 (589)
+...|+++.|..+++.+..+. |+. ..-..-+....+.|..+.+. +++... ...-+......+. -.+.
T Consensus 376 ~e~~~n~~~A~~~lq~i~~e~---pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~~~~i~~~l~~~~~r~~~~ 452 (577)
T KOG1258|consen 376 EESNGNFDDAKVILQRIESEY---PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGKENNGILEKLYVKFARLRYK 452 (577)
T ss_pred HHhhccHHHHHHHHHHHHhhC---CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcccccCcchhHHHHHHHHHHHHH
Confidence 566789999999999997643 553 22223345666788888877 444444 1122222222222 2245
Q ss_pred cCCCHHHHHHHHHHHHccCCCCCcchHHHHHHHhhcC
Q 007808 476 VYKNVELAELALERLTELEPKNPANFVMLSNIYGDLG 512 (589)
Q Consensus 476 ~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 512 (589)
-.++.+.|..++.++.+..|++...|..+++.....+
T Consensus 453 i~~d~~~a~~~l~~~~~~~~~~k~~~~~~~~~~~~~~ 489 (577)
T KOG1258|consen 453 IREDADLARIILLEANDILPDCKVLYLELIRFELIQP 489 (577)
T ss_pred HhcCHHHHHHHHHHhhhcCCccHHHHHHHHHHHHhCC
Confidence 6788999999999999999999999999988877665
No 215
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=97.19 E-value=0.018 Score=50.65 Aligned_cols=166 Identities=15% Similarity=0.107 Sum_probs=88.3
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHCCCC-C-CHhHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHH
Q 007808 364 WNTIISGLAMHGRGAGALSLFHEMKNAGEM-P-DGITFIGILCACTHMGLVEEGLSYFQSMAMDYSIVPQIEHYGCMVDL 441 (589)
Q Consensus 364 ~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~-p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~ 441 (589)
+-.....+...|++.+|+..|+++...... | -......++.++.+.|+++.|...++..++.+.-.|... +...+.+
T Consensus 8 lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~-~A~Y~~g 86 (203)
T PF13525_consen 8 LYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKAD-YALYMLG 86 (203)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHH-HHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchh-hHHHHHH
Confidence 334455566777788888888777764211 1 123445566677777777777777777776654444321 1111111
Q ss_pred HHhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHccCCCCCc-----------------chHHH
Q 007808 442 LARAGRLAEAVDFVKRMPIEADAVIWANLLGSCRVYKNVELAELALERLTELEPKNPA-----------------NFVML 504 (589)
Q Consensus 442 ~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~-----------------~~~~l 504 (589)
.+......... ......+...+|...|+.+++.-|+++. .-..+
T Consensus 87 ~~~~~~~~~~~-------------------~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~la~~e~~i 147 (203)
T PF13525_consen 87 LSYYKQIPGIL-------------------RSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNRLAEHELYI 147 (203)
T ss_dssp HHHHHHHHHHH--------------------TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhCccch-------------------hcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11111111100 0011223334555555555555555432 22356
Q ss_pred HHHHhhcCChHHHHHHHHHhhhCCCccCCccceeeeCCeeeeeccccCCCch---HHHHHHHHHHHHcccCC
Q 007808 505 SNIYGDLGRWKDVARIKVAMRDTGFKKLPGCSSIEVNEVVMLGCLSRELDRK---SIVRAEANMIKLLPQNN 573 (589)
Q Consensus 505 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~---~~~~~l~~~~~~~~~~~ 573 (589)
+..|.+.|.+..|+.-++.+. +.-|+.+ .++..+...|.++|...
T Consensus 148 a~~Y~~~~~y~aA~~r~~~v~------------------------~~yp~t~~~~~al~~l~~~y~~l~~~~ 195 (203)
T PF13525_consen 148 ARFYYKRGKYKAAIIRFQYVI------------------------ENYPDTPAAEEALARLAEAYYKLGLKQ 195 (203)
T ss_dssp HHHHHCTT-HHHHHHHHHHHH------------------------HHSTTSHHHHHHHHHHHHHHHHTT-HH
T ss_pred HHHHHHcccHHHHHHHHHHHH------------------------HHCCCCchHHHHHHHHHHHHHHhCChH
Confidence 788999999999999999985 4455554 45666778888888775
No 216
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.18 E-value=0.1 Score=47.24 Aligned_cols=55 Identities=16% Similarity=0.066 Sum_probs=27.9
Q ss_pred HHHHHhccCcHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHHhcCCHHHHHHHHh
Q 007808 402 ILCACTHMGLVEEGLSYFQSMAMDYSIVPQ-IEHYGCMVDLLARAGRLAEAVDFVK 456 (589)
Q Consensus 402 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~ 456 (589)
+...|.+.|.+..|..-++.+++++.-.|. ......++.+|...|..++|.++..
T Consensus 181 ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~ 236 (243)
T PRK10866 181 VAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAK 236 (243)
T ss_pred HHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHH
Confidence 344455556666666666655554322222 2333445555666666665555443
No 217
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.18 E-value=0.34 Score=49.34 Aligned_cols=115 Identities=13% Similarity=0.149 Sum_probs=88.7
Q ss_pred CCCHhHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCCHHHHHHHHH
Q 007808 393 MPDGITFIGILCACTHMGLVEEGLSYFQSMAMDYSIVPQIEHYGCMVDLLARAGRLAEAVDFVKRMPIEADAVIWANLLG 472 (589)
Q Consensus 393 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~ 472 (589)
.-...+.+--+.-+...|+..+|.++-.+.. .||-..|-.-+.+++..+++++-+++-+... . +.-|.-++.
T Consensus 681 ~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk-----ipdKr~~wLk~~aLa~~~kweeLekfAkskk-s--PIGy~PFVe 752 (829)
T KOG2280|consen 681 SFVDLSLHDTVTTLILIGQNKRAEQLKSDFK-----IPDKRLWWLKLTALADIKKWEELEKFAKSKK-S--PIGYLPFVE 752 (829)
T ss_pred ccccCcHHHHHHHHHHccchHHHHHHHHhcC-----CcchhhHHHHHHHHHhhhhHHHHHHHHhccC-C--CCCchhHHH
Confidence 3444456666777778899999999877663 3888888888899999999999888888774 1 334555788
Q ss_pred HHhcCCCHHHHHHHHHHHHccCCCCCcchHHHHHHHhhcCChHHHHHHHHH
Q 007808 473 SCRVYKNVELAELALERLTELEPKNPANFVMLSNIYGDLGRWKDVARIKVA 523 (589)
Q Consensus 473 ~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 523 (589)
+|.+.|+.++|..++.+.-. +...+.+|.+.|++.+|.++--+
T Consensus 753 ~c~~~~n~~EA~KYiprv~~--------l~ekv~ay~~~~~~~eAad~A~~ 795 (829)
T KOG2280|consen 753 ACLKQGNKDEAKKYIPRVGG--------LQEKVKAYLRVGDVKEAADLAAE 795 (829)
T ss_pred HHHhcccHHHHhhhhhccCC--------hHHHHHHHHHhccHHHHHHHHHH
Confidence 99999999999988876433 22678899999999999887443
No 218
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=97.18 E-value=0.03 Score=49.46 Aligned_cols=174 Identities=12% Similarity=0.138 Sum_probs=104.7
Q ss_pred HHHHHhCCChHHHHHHHHHHHHCCC-CC-CHhHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhc
Q 007808 368 ISGLAMHGRGAGALSLFHEMKNAGE-MP-DGITFIGILCACTHMGLVEEGLSYFQSMAMDYSIVPQIEHYGCMVDLLARA 445 (589)
Q Consensus 368 ~~~~~~~~~~~~A~~~~~~m~~~~~-~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 445 (589)
+..-.+.|++++|...|+.+..+.. .| ...+...++-++.+.++++.|+..+++..+.++-.||.. |...+.++.
T Consensus 41 g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~d-Y~~YlkgLs-- 117 (254)
T COG4105 41 GLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNAD-YAYYLKGLS-- 117 (254)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChh-HHHHHHHHH--
Confidence 3445566778888888877776421 11 334555666677777888888888887777666666653 333344433
Q ss_pred CCHHHHHHHHhhCC-CCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHccCCCCC-----------------cchHHHHHH
Q 007808 446 GRLAEAVDFVKRMP-IEADAVIWANLLGSCRVYKNVELAELALERLTELEPKNP-----------------ANFVMLSNI 507 (589)
Q Consensus 446 g~~~~A~~~~~~~~-~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~-----------------~~~~~l~~~ 507 (589)
.|..+. ..-|. .-..+|...++..+..-|+++ ..=..+++.
T Consensus 118 --------~~~~i~~~~rDq-------------~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~~Em~Iary 176 (254)
T COG4105 118 --------YFFQIDDVTRDQ-------------SAARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDALAGHEMAIARY 176 (254)
T ss_pred --------HhccCCccccCH-------------HHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 111111 00011 112233333444444444421 122356788
Q ss_pred HhhcCChHHHHHHHHHhhhCCCccCCccceeeeCCeeeeeccccCCCchHHHHHHHHHHHHcccCCCCcchHhhhhhcc
Q 007808 508 YGDLGRWKDVARIKVAMRDTGFKKLPGCSSIEVNEVVMLGCLSRELDRKSIVRAEANMIKLLPQNNHPLTFIVVIFSTF 586 (589)
Q Consensus 508 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 586 (589)
|.+.|.|..|..-+++|.+.- ..-|.-.+++..+.++|..+|..++|.+...+|..-|
T Consensus 177 Y~kr~~~~AA~nR~~~v~e~y---------------------~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~N~ 234 (254)
T COG4105 177 YLKRGAYVAAINRFEEVLENY---------------------PDTSAVREALARLEEAYYALGLTDEAKKTAKVLGANY 234 (254)
T ss_pred HHHhcChHHHHHHHHHHHhcc---------------------ccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHhcC
Confidence 999999999999999996331 1233445566667888999999999999888886654
No 219
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=97.11 E-value=0.099 Score=51.98 Aligned_cols=87 Identities=8% Similarity=0.101 Sum_probs=48.1
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHhhCCCCCcchH----------
Q 007808 295 DATIVTVLSACARLGALDFSKWVHVYAEYNGYQGNVCVGNALIDMYAKCGIIENAVDVFNSMDTKDLITW---------- 364 (589)
Q Consensus 295 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~---------- 364 (589)
..+...+...+.+...+..|.++|..+-+. ..+++.+...++|.+|..+-+..++--...|
T Consensus 747 re~l~~~a~ylk~l~~~gLAaeIF~k~gD~---------ksiVqlHve~~~W~eAFalAe~hPe~~~dVy~pyaqwLAE~ 817 (1081)
T KOG1538|consen 747 REPLLLCATYLKKLDSPGLAAEIFLKMGDL---------KSLVQLHVETQRWDEAFALAEKHPEFKDDVYMPYAQWLAEN 817 (1081)
T ss_pred hhHHHHHHHHHhhccccchHHHHHHHhccH---------HHHhhheeecccchHhHhhhhhCccccccccchHHHHhhhh
Confidence 334444444455555666666666665432 2356666677777777777776664222222
Q ss_pred ---HHHHHHHHhCCChHHHHHHHHHHHHC
Q 007808 365 ---NTIISGLAMHGRGAGALSLFHEMKNA 390 (589)
Q Consensus 365 ---~~l~~~~~~~~~~~~A~~~~~~m~~~ 390 (589)
...-.+|.+.|+..+|..+++++...
T Consensus 818 DrFeEAqkAfhkAGr~~EA~~vLeQLtnn 846 (1081)
T KOG1538|consen 818 DRFEEAQKAFHKAGRQREAVQVLEQLTNN 846 (1081)
T ss_pred hhHHHHHHHHHHhcchHHHHHHHHHhhhh
Confidence 22223455566666666666666543
No 220
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.10 E-value=0.048 Score=47.89 Aligned_cols=125 Identities=13% Similarity=0.034 Sum_probs=77.1
Q ss_pred HHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHhhCC---CCCCHHHH-----HHHH
Q 007808 400 IGILCACTHMGLVEEGLSYFQSMAMDYSIVPQIEHYGCMVDLLARAGRLAEAVDFVKRMP---IEADAVIW-----ANLL 471 (589)
Q Consensus 400 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~p~~~~~-----~~l~ 471 (589)
+.++..+...|.+.-....+++.++. .-+.++.....|+..-.+.|+.+.|...|++.. ..-+..+. ....
T Consensus 181 y~~~~~llG~kEy~iS~d~~~~vi~~-~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a 259 (366)
T KOG2796|consen 181 YSMANCLLGMKEYVLSVDAYHSVIKY-YPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSA 259 (366)
T ss_pred HHHHHHHhcchhhhhhHHHHHHHHHh-CCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhh
Confidence 34455555556666666666666442 223345555566666666666666666666431 11111222 2222
Q ss_pred HHHhcCCCHHHHHHHHHHHHccCCCCCcchHHHHHHHhhcCChHHHHHHHHHhh
Q 007808 472 GSCRVYKNVELAELALERLTELEPKNPANFVMLSNIYGDLGRWKDVARIKVAMR 525 (589)
Q Consensus 472 ~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 525 (589)
..+.-++++..|...+.++++.+|.++.+.++-+-++.-.|+..+|++.++.|.
T Consensus 260 ~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~ 313 (366)
T KOG2796|consen 260 FLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMV 313 (366)
T ss_pred hheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHh
Confidence 345566778888888888888888888888888888878888888888888875
No 221
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=97.08 E-value=0.00031 Score=40.87 Aligned_cols=30 Identities=7% Similarity=0.025 Sum_probs=27.5
Q ss_pred ccccCCCchHHHHHHHHHHHHcccCCCCcc
Q 007808 548 CLSRELDRKSIVRAEANMIKLLPQNNHPLT 577 (589)
Q Consensus 548 ~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~ 577 (589)
+++++|+++.++..||++|...|+.++|+.
T Consensus 5 Aie~~P~n~~a~~nla~~~~~~g~~~~A~~ 34 (34)
T PF13431_consen 5 AIELNPNNAEAYNNLANLYLNQGDYEEAIA 34 (34)
T ss_pred HHHHCCCCHHHHHHHHHHHHHCcCHHhhcC
Confidence 678999999999999999999999988763
No 222
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.08 E-value=0.0027 Score=54.20 Aligned_cols=98 Identities=9% Similarity=0.148 Sum_probs=78.2
Q ss_pred HHHHhhcC--CCCCcccHHHHHHHHHc-----CCChhHHHHHHHHhhhCCCCCCcccHHHHHHHHhccC-----------
Q 007808 53 ARKMFDKI--TDQNVVSWNAMFNGYAQ-----NEFHRTVVVLFTQMKKLDAMPNCFTFPIVLKSCVKIN----------- 114 (589)
Q Consensus 53 A~~~~~~~--~~~~~~~~~~ll~~~~~-----~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~----------- 114 (589)
-...|+.. ...+-.+|..++..|.+ .|..+=....+..|.+.|+.-|..+|+.|+..+-+..
T Consensus 33 ~~~~f~~~~~~~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F 112 (228)
T PF06239_consen 33 HEELFERAPGQAKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEF 112 (228)
T ss_pred hHHHHHHHhhccccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHh
Confidence 34556655 34677888888888864 4667777778889999999999999999999875431
Q ss_pred -----ChHHHHHHHHHHHHhCCCCchHHHhHHHHHHHcCCC
Q 007808 115 -----ALREGEELHCLVLKNGFRANIFVGTALIELYSTGKA 150 (589)
Q Consensus 115 -----~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 150 (589)
+.+-|++++++|...|+-||..++..|++.+++.+.
T Consensus 113 ~hyp~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 113 MHYPRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred ccCcHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 235588999999999999999999999999987764
No 223
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.07 E-value=0.05 Score=47.78 Aligned_cols=138 Identities=11% Similarity=0.022 Sum_probs=100.3
Q ss_pred hHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCC-----CChhHHHH
Q 007808 261 SWNGLIGGYANNGLFFEVLDAFKRMLTEGRVFPNDATIVTVLSACARLGALDFSKWVHVYAEYNGYQ-----GNVCVGNA 335 (589)
Q Consensus 261 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-----~~~~~~~~ 335 (589)
..+.++.++...|.+.-.+..+++.++.. .+.++.....+.+...+.||.+.|...++...+..-. .+..+...
T Consensus 179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~~-~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n 257 (366)
T KOG2796|consen 179 VMYSMANCLLGMKEYVLSVDAYHSVIKYY-PEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMN 257 (366)
T ss_pred HHHHHHHHHhcchhhhhhHHHHHHHHHhC-CcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhh
Confidence 44667777888899999999999999876 5667778888999999999999999999977764333 33333334
Q ss_pred HHHHHHhcCChHHHHHHHhhCCCC---CcchHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHhHHHH
Q 007808 336 LIDMYAKCGIIENAVDVFNSMDTK---DLITWNTIISGLAMHGRGAGALSLFHEMKNAGEMPDGITFIG 401 (589)
Q Consensus 336 l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ 401 (589)
....|.-++++.+|...|.++... ++..-|.-.-++.-.|+...|++.++.|.+. .|...+-++
T Consensus 258 ~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~--~P~~~l~es 324 (366)
T KOG2796|consen 258 SAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQ--DPRHYLHES 324 (366)
T ss_pred hhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhcc--CCccchhhh
Confidence 445566778888888888877743 4455555555555668888899999988884 555544443
No 224
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=97.07 E-value=0.017 Score=46.19 Aligned_cols=75 Identities=17% Similarity=0.196 Sum_probs=50.8
Q ss_pred HHHHHhcCCHHHHHHHHhhCC----CCC-CHHHHHHHHHHHhcCCCHHHHHHHHHHHHccCCCCCc---chHHHHHHHhh
Q 007808 439 VDLLARAGRLAEAVDFVKRMP----IEA-DAVIWANLLGSCRVYKNVELAELALERLTELEPKNPA---NFVMLSNIYGD 510 (589)
Q Consensus 439 ~~~~~~~g~~~~A~~~~~~~~----~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~---~~~~l~~~~~~ 510 (589)
.....+.|++++|.+.|+.+. ..| ....-..++.+|.+.|++++|...+++.++++|.++. ++...+-++.+
T Consensus 17 a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~~~~ 96 (142)
T PF13512_consen 17 AQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLSYYE 96 (142)
T ss_pred HHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHHHHH
Confidence 444557888888888888772 222 2344555778888999999999999999998888765 33344444444
Q ss_pred cCC
Q 007808 511 LGR 513 (589)
Q Consensus 511 ~g~ 513 (589)
...
T Consensus 97 ~~~ 99 (142)
T PF13512_consen 97 QDE 99 (142)
T ss_pred Hhh
Confidence 433
No 225
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=96.98 E-value=0.00076 Score=48.82 Aligned_cols=61 Identities=15% Similarity=0.135 Sum_probs=38.3
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHcc----CCCC---CcchHHHHHHHhhcCChHHHHHHHHHhh
Q 007808 465 VIWANLLGSCRVYKNVELAELALERLTEL----EPKN---PANFVMLSNIYGDLGRWKDVARIKVAMR 525 (589)
Q Consensus 465 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~p~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 525 (589)
.+++.+...|...|++++|+..|++++++ .+++ ..++..++.++...|++++|++++++..
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al 73 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKAL 73 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 34556666667777777777777777652 2221 3466677777777777777777776653
No 226
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=96.93 E-value=0.012 Score=55.19 Aligned_cols=93 Identities=12% Similarity=0.121 Sum_probs=79.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHhhC-CC-CCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHccCCCCCcchHHHHHHHhh
Q 007808 433 EHYGCMVDLLARAGRLAEAVDFVKRM-PI-EADAVIWANLLGSCRVYKNVELAELALERLTELEPKNPANFVMLSNIYGD 510 (589)
Q Consensus 433 ~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 510 (589)
.+++.+.-+|.+.+++.+|++.-.+. .. +++...+-.-..+|...|+++.|+..|+++++++|.|..+...|+.+-.+
T Consensus 258 ~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k 337 (397)
T KOG0543|consen 258 ACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQK 337 (397)
T ss_pred HHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence 35677888999999999999988877 33 45777777777999999999999999999999999999999999999888
Q ss_pred cCChHHH-HHHHHHhh
Q 007808 511 LGRWKDV-ARIKVAMR 525 (589)
Q Consensus 511 ~g~~~~A-~~~~~~~~ 525 (589)
..++.+. .++|..|-
T Consensus 338 ~~~~~~kekk~y~~mF 353 (397)
T KOG0543|consen 338 IREYEEKEKKMYANMF 353 (397)
T ss_pred HHHHHHHHHHHHHHHh
Confidence 8776665 67888884
No 227
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=96.88 E-value=0.00097 Score=63.77 Aligned_cols=59 Identities=19% Similarity=-0.082 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHccC--CCCCcc---hHHHHHHHhhcCChHHHHHHHHHh
Q 007808 464 AVIWANLLGSCRVYKNVELAELALERLTELE--PKNPAN---FVMLSNIYGDLGRWKDVARIKVAM 524 (589)
Q Consensus 464 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--p~~~~~---~~~l~~~~~~~g~~~~A~~~~~~~ 524 (589)
...++.+..+|.+.|++++|+..|++++ . |++..+ |++++.+|...|+.++|++.+++.
T Consensus 75 a~a~~NLG~AL~~lGryeEAIa~f~rAL--eL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrA 138 (453)
T PLN03098 75 AEDAVNLGLSLFSKGRVKDALAQFETAL--ELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTA 138 (453)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHH--hhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3444555555555555555555554432 4 333322 555555555555555555555544
No 228
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=96.88 E-value=0.0078 Score=50.33 Aligned_cols=87 Identities=13% Similarity=0.142 Sum_probs=69.9
Q ss_pred HHHHHhcCCHHHHHHHHhhC-C-CCCC-----HHHHHHHHHHHhcCCCHHHHHHHHHHHHccCCCCCcchHHHHHHHhhc
Q 007808 439 VDLLARAGRLAEAVDFVKRM-P-IEAD-----AVIWANLLGSCRVYKNVELAELALERLTELEPKNPANFVMLSNIYGDL 511 (589)
Q Consensus 439 ~~~~~~~g~~~~A~~~~~~~-~-~~p~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 511 (589)
.+-+.+.|++++|..-|..+ . .++. ...|..-..++.+.+.++.|+.-..++++++|....++..-+.+|.+.
T Consensus 102 GN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~ 181 (271)
T KOG4234|consen 102 GNELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEKM 181 (271)
T ss_pred HHHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhh
Confidence 45567888888888887766 2 2222 334444556778999999999999999999999888888889999999
Q ss_pred CChHHHHHHHHHhh
Q 007808 512 GRWKDVARIKVAMR 525 (589)
Q Consensus 512 g~~~~A~~~~~~~~ 525 (589)
.++++|++-|+++.
T Consensus 182 ek~eealeDyKki~ 195 (271)
T KOG4234|consen 182 EKYEEALEDYKKIL 195 (271)
T ss_pred hhHHHHHHHHHHHH
Confidence 99999999999995
No 229
>PRK11906 transcriptional regulator; Provisional
Probab=96.87 E-value=0.0059 Score=58.70 Aligned_cols=144 Identities=9% Similarity=0.032 Sum_probs=104.4
Q ss_pred cHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHHhc---------CCHHHHHHHHhhC-CCCC-CHHHHHHHHHHHhcCC
Q 007808 411 LVEEGLSYFQSMAMDYSIVPQ-IEHYGCMVDLLARA---------GRLAEAVDFVKRM-PIEA-DAVIWANLLGSCRVYK 478 (589)
Q Consensus 411 ~~~~A~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~---------g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g 478 (589)
..+.|..+|.+......+.|+ ...|..+..++... ....+|.+..+++ .+.| |......+..+....+
T Consensus 273 ~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~Da~a~~~~g~~~~~~~ 352 (458)
T PRK11906 273 SIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTVDGKILAIMGLITGLSG 352 (458)
T ss_pred HHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhc
Confidence 467888899988755566676 45555555444322 2234556666655 3444 5666666667677788
Q ss_pred CHHHHHHHHHHHHccCCCCCcchHHHHHHHhhcCChHHHHHHHHHhhhCCCccCCccceeeeCCeeeeeccccCCCchHH
Q 007808 479 NVELAELALERLTELEPKNPANFVMLSNIYGDLGRWKDVARIKVAMRDTGFKKLPGCSSIEVNEVVMLGCLSRELDRKSI 558 (589)
Q Consensus 479 ~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 558 (589)
+++.|...|+++..++|+.+.++...++++.-.|+.++|.+.+++.. +++|....+
T Consensus 353 ~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~al------------------------rLsP~~~~~ 408 (458)
T PRK11906 353 QAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSL------------------------QLEPRRRKA 408 (458)
T ss_pred chhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHh------------------------ccCchhhHH
Confidence 89999999999999999999999999999999999999999998864 788998888
Q ss_pred HHHHHHH--HHHcccCCCCcchH
Q 007808 559 VRAEANM--IKLLPQNNHPLTFI 579 (589)
Q Consensus 559 ~~~l~~~--~~~~~~~~~~~~~~ 579 (589)
-..--|+ |... ..++||.+.
T Consensus 409 ~~~~~~~~~~~~~-~~~~~~~~~ 430 (458)
T PRK11906 409 VVIKECVDMYVPN-PLKNNIKLY 430 (458)
T ss_pred HHHHHHHHHHcCC-chhhhHHHH
Confidence 7777776 4333 333566554
No 230
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.83 E-value=0.014 Score=51.89 Aligned_cols=89 Identities=25% Similarity=0.333 Sum_probs=65.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhhC----C---CCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHccCCC---CCcchHH
Q 007808 434 HYGCMVDLLARAGRLAEAVDFVKRM----P---IEADAVIWANLLGSCRVYKNVELAELALERLTELEPK---NPANFVM 503 (589)
Q Consensus 434 ~~~~l~~~~~~~g~~~~A~~~~~~~----~---~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~---~~~~~~~ 503 (589)
.|+.-+.. .+.|++.+|...|... + ..|+...| |..++...|+++.|...|..+.+-.|+ -|+.+.-
T Consensus 144 ~Y~~A~~~-~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yW--LGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallK 220 (262)
T COG1729 144 LYNAALDL-YKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYW--LGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLK 220 (262)
T ss_pred HHHHHHHH-HHcCCHHHHHHHHHHHHHcCCCCcccchhHHH--HHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHH
Confidence 46654443 4667788887777665 1 34455555 778888888888888888888886554 4567888
Q ss_pred HHHHHhhcCChHHHHHHHHHhh
Q 007808 504 LSNIYGDLGRWKDVARIKVAMR 525 (589)
Q Consensus 504 l~~~~~~~g~~~~A~~~~~~~~ 525 (589)
|+.+..+.|+.++|...++++.
T Consensus 221 lg~~~~~l~~~d~A~atl~qv~ 242 (262)
T COG1729 221 LGVSLGRLGNTDEACATLQQVI 242 (262)
T ss_pred HHHHHHHhcCHHHHHHHHHHHH
Confidence 8888888888888888888885
No 231
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=96.83 E-value=0.013 Score=50.26 Aligned_cols=96 Identities=15% Similarity=0.223 Sum_probs=62.8
Q ss_pred HHHhhC--CCCCcchHHHHHHHHHh-----CCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhcc--------------
Q 007808 351 DVFNSM--DTKDLITWNTIISGLAM-----HGRGAGALSLFHEMKNAGEMPDGITFIGILCACTHM-------------- 409 (589)
Q Consensus 351 ~~~~~~--~~~~~~~~~~l~~~~~~-----~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~-------------- 409 (589)
..|+.. ..++-.+|..++..|.+ .|..+=....++.|.+-|+.-|..+|+.|++.+=+.
T Consensus 35 ~~f~~~~~~~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~h 114 (228)
T PF06239_consen 35 ELFERAPGQAKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMH 114 (228)
T ss_pred HHHHHHhhccccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhcc
Confidence 344444 34466666667776664 366666777888888888888999999888876542
Q ss_pred --CcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCC
Q 007808 410 --GLVEEGLSYFQSMAMDYSIVPQIEHYGCMVDLLARAGR 447 (589)
Q Consensus 410 --g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 447 (589)
.+-+-|++++++| +.+|+.||..++..+++.+++.+.
T Consensus 115 yp~Qq~c~i~lL~qM-E~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 115 YPRQQECAIDLLEQM-ENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred CcHHHHHHHHHHHHH-HHcCCCCcHHHHHHHHHHhccccH
Confidence 1234566666666 455666666666666666655543
No 232
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.80 E-value=0.0098 Score=52.94 Aligned_cols=100 Identities=12% Similarity=0.136 Sum_probs=83.6
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHccCCCC---CcchHHHHHHHhhcCChHHHHHHHHHhhhCCCccCCccceeeeC
Q 007808 465 VIWANLLGSCRVYKNVELAELALERLTELEPKN---PANFVMLSNIYGDLGRWKDVARIKVAMRDTGFKKLPGCSSIEVN 541 (589)
Q Consensus 465 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 541 (589)
..|+.-+.. .+.|++..|...|...++.-|++ +.+++-|++++...|++++|..+|-.+.+.-
T Consensus 143 ~~Y~~A~~~-~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~------------- 208 (262)
T COG1729 143 KLYNAALDL-YKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDY------------- 208 (262)
T ss_pred HHHHHHHHH-HHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhC-------------
Confidence 356655554 47788999999999999988874 5689999999999999999999999885322
Q ss_pred CeeeeeccccCCCchHHHHHHHHHHHHcccCCCCcchHhhhhhcc
Q 007808 542 EVVMLGCLSRELDRKSIVRAEANMIKLLPQNNHPLTFIVVIFSTF 586 (589)
Q Consensus 542 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 586 (589)
-.+|.-|+.+.-||.+..++|+.++|-..+..|...|
T Consensus 209 --------P~s~KApdallKlg~~~~~l~~~d~A~atl~qv~k~Y 245 (262)
T COG1729 209 --------PKSPKAPDALLKLGVSLGRLGNTDEACATLQQVIKRY 245 (262)
T ss_pred --------CCCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHHC
Confidence 2678889999999999999999999988888877665
No 233
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=96.74 E-value=0.0023 Score=46.28 Aligned_cols=60 Identities=20% Similarity=0.245 Sum_probs=34.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhhCC-----CC---CC-HHHHHHHHHHHhcCCCHHHHHHHHHHHHcc
Q 007808 434 HYGCMVDLLARAGRLAEAVDFVKRMP-----IE---AD-AVIWANLLGSCRVYKNVELAELALERLTEL 493 (589)
Q Consensus 434 ~~~~l~~~~~~~g~~~~A~~~~~~~~-----~~---p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 493 (589)
+++.+...|...|++++|++.+++.. .. |+ ..++..+..++...|++++|++++++++++
T Consensus 7 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i 75 (78)
T PF13424_consen 7 AYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDI 75 (78)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 45555566666666666665555541 11 11 345556666777777777777777776653
No 234
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=96.70 E-value=0.05 Score=42.29 Aligned_cols=141 Identities=13% Similarity=0.174 Sum_probs=85.3
Q ss_pred HHhCCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHH
Q 007808 371 LAMHGRGAGALSLFHEMKNAGEMPDGITFIGILCACTHMGLVEEGLSYFQSMAMDYSIVPQIEHYGCMVDLLARAGRLAE 450 (589)
Q Consensus 371 ~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 450 (589)
..-.|..++..++..+...+ .+..-++.++--....-+-+-..+.++.+-+- .|. ..+|+...
T Consensus 12 ~ildG~V~qGveii~k~v~S---sni~E~NWvICNiiDaa~C~yvv~~LdsIGki----FDi----------s~C~NlKr 74 (161)
T PF09205_consen 12 RILDGDVKQGVEIIEKTVNS---SNIKEYNWVICNIIDAADCDYVVETLDSIGKI----FDI----------SKCGNLKR 74 (161)
T ss_dssp HHHTT-HHHHHHHHHHHHHH---S-HHHHTHHHHHHHHH--HHHHHHHHHHHGGG----S-G----------GG-S-THH
T ss_pred HHHhchHHHHHHHHHHHcCc---CCccccceeeeecchhhchhHHHHHHHHHhhh----cCc----------hhhcchHH
Confidence 34467777778887777762 34455665655444445555555555555222 221 23444555
Q ss_pred HHHHHhhCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHccCCCCCcchHHHHHHHhhcCChHHHHHHHHHhhhCCCc
Q 007808 451 AVDFVKRMPIEADAVIWANLLGSCRVYKNVELAELALERLTELEPKNPANFVMLSNIYGDLGRWKDVARIKVAMRDTGFK 530 (589)
Q Consensus 451 A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 530 (589)
....+-.+. .+.......+..+..+|+-+.-.+++..+.+.+..+|+.+..++.+|.+.|+..++-++++++-+.|++
T Consensus 75 Vi~C~~~~n--~~se~vD~ALd~lv~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~k 152 (161)
T PF09205_consen 75 VIECYAKRN--KLSEYVDLALDILVKQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELLKEACEKGLK 152 (161)
T ss_dssp HHHHHHHTT-----HHHHHHHHHHHHTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-H
T ss_pred HHHHHHHhc--chHHHHHHHHHHHHHhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhchH
Confidence 555544443 234555666788889999999999999988655555899999999999999999999999999888875
No 235
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.69 E-value=0.14 Score=46.26 Aligned_cols=118 Identities=13% Similarity=0.091 Sum_probs=80.9
Q ss_pred HHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCCHHHHHH---HHHHHhcCCCHH
Q 007808 405 ACTHMGLVEEGLSYFQSMAMDYSIVPQIEHYGCMVDLLARAGRLAEAVDFVKRMPIEADAVIWAN---LLGSCRVYKNVE 481 (589)
Q Consensus 405 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~---l~~~~~~~g~~~ 481 (589)
.....|++.+|..+|+...... +-+......|+.+|...|+.+.|..++..++..-...-+.. -+..+.+.....
T Consensus 143 ~~~~~e~~~~a~~~~~~al~~~--~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~ 220 (304)
T COG3118 143 ELIEAEDFGEAAPLLKQALQAA--PENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATP 220 (304)
T ss_pred hhhhccchhhHHHHHHHHHHhC--cccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCC
Confidence 4567788889998888886532 23345566788899999999999999998864433333333 122232222222
Q ss_pred HHHHHHHHHHccCCCCCcchHHHHHHHhhcCChHHHHHHHHHhh
Q 007808 482 LAELALERLTELEPKNPANFVMLSNIYGDLGRWKDVARIKVAMR 525 (589)
Q Consensus 482 ~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 525 (589)
+.. .+++-...+|+|...-..++..|...|+.++|.+.+=.+.
T Consensus 221 ~~~-~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l 263 (304)
T COG3118 221 EIQ-DLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALL 263 (304)
T ss_pred CHH-HHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 222 3444556789999999999999999999999999776664
No 236
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=96.68 E-value=0.15 Score=50.87 Aligned_cols=217 Identities=13% Similarity=0.085 Sum_probs=103.8
Q ss_pred HHHHHHHHHhcCChhHH--HHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHhhCCCCC--cchHHH-----HH
Q 007808 298 IVTVLSACARLGALDFS--KWVHVYAEYNGYQGNVCVGNALIDMYAKCGIIENAVDVFNSMDTKD--LITWNT-----II 368 (589)
Q Consensus 298 ~~~l~~~~~~~~~~~~a--~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~-----l~ 368 (589)
++..-.+|.+..+..-- ..-++++.+.|-.|+... +...++-.|++.+|-++|.+-...+ ...|+- +.
T Consensus 601 f~~ARkAY~rVRdl~~L~li~EL~~~k~rge~P~~iL---lA~~~Ay~gKF~EAAklFk~~G~enRAlEmyTDlRMFD~a 677 (1081)
T KOG1538|consen 601 FETARKAYIRVRDLRYLELISELEERKKRGETPNDLL---LADVFAYQGKFHEAAKLFKRSGHENRALEMYTDLRMFDYA 677 (1081)
T ss_pred hHHHHHHHHHHhccHHHHHHHHHHHHHhcCCCchHHH---HHHHHHhhhhHHHHHHHHHHcCchhhHHHHHHHHHHHHHH
Confidence 44444455555544332 223445556665565533 3344555666777777666544221 111211 12
Q ss_pred HHHHhCCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCcHHHHHHHHHH-----hHHhcCC---CCChHHHHHHHH
Q 007808 369 SGLAMHGRGAGALSLFHEMKNAGEMPDGITFIGILCACTHMGLVEEGLSYFQS-----MAMDYSI---VPQIEHYGCMVD 440 (589)
Q Consensus 369 ~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~-----~~~~~~~---~~~~~~~~~l~~ 440 (589)
+-+...|..++-..+.++-.+ +.-|..--......+...|+.++|..+.-+ +.-+-+. ..+..+...+..
T Consensus 678 QE~~~~g~~~eKKmL~RKRA~--WAr~~kePkaAAEmLiSaGe~~KAi~i~~d~gW~d~lidI~rkld~~ere~l~~~a~ 755 (1081)
T KOG1538|consen 678 QEFLGSGDPKEKKMLIRKRAD--WARNIKEPKAAAEMLISAGEHVKAIEICGDHGWVDMLIDIARKLDKAEREPLLLCAT 755 (1081)
T ss_pred HHHhhcCChHHHHHHHHHHHH--HhhhcCCcHHHHHHhhcccchhhhhhhhhcccHHHHHHHHHhhcchhhhhHHHHHHH
Confidence 234444554444444333221 000110011222334445665555544211 1000011 123344444444
Q ss_pred HHHhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHccCCCCCcchHHH-------------HHH
Q 007808 441 LLARAGRLAEAVDFVKRMPIEADAVIWANLLGSCRVYKNVELAELALERLTELEPKNPANFVML-------------SNI 507 (589)
Q Consensus 441 ~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l-------------~~~ 507 (589)
-+.+...+.-|.++|.+|+. ...+++.....+++.+|..+.++.-+.-|+ .|.-. -.+
T Consensus 756 ylk~l~~~gLAaeIF~k~gD------~ksiVqlHve~~~W~eAFalAe~hPe~~~d---Vy~pyaqwLAE~DrFeEAqkA 826 (1081)
T KOG1538|consen 756 YLKKLDSPGLAAEIFLKMGD------LKSLVQLHVETQRWDEAFALAEKHPEFKDD---VYMPYAQWLAENDRFEEAQKA 826 (1081)
T ss_pred HHhhccccchHHHHHHHhcc------HHHHhhheeecccchHhHhhhhhCcccccc---ccchHHHHhhhhhhHHHHHHH
Confidence 55556666677777777751 123455666777777777777776665554 22222 234
Q ss_pred HhhcCChHHHHHHHHHhhhCC
Q 007808 508 YGDLGRWKDVARIKVAMRDTG 528 (589)
Q Consensus 508 ~~~~g~~~~A~~~~~~~~~~~ 528 (589)
|-++|+-.+|.++++++....
T Consensus 827 fhkAGr~~EA~~vLeQLtnna 847 (1081)
T KOG1538|consen 827 FHKAGRQREAVQVLEQLTNNA 847 (1081)
T ss_pred HHHhcchHHHHHHHHHhhhhh
Confidence 666777777777777765433
No 237
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=96.66 E-value=0.41 Score=42.13 Aligned_cols=178 Identities=12% Similarity=0.022 Sum_probs=78.8
Q ss_pred HHHHHHhCCChHHHHHHHHHHHHcCCCCC-cHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhHHHHHHHHHHhc
Q 007808 265 LIGGYANNGLFFEVLDAFKRMLTEGRVFP-NDATIVTVLSACARLGALDFSKWVHVYAEYNGYQGNVCVGNALIDMYAKC 343 (589)
Q Consensus 265 l~~~~~~~g~~~~A~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 343 (589)
....+...|++.+|++.|+.+....+..| -......++.++.+.|+++.|...++..++.-......-+...+.+.+..
T Consensus 11 ~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~~g~~~~ 90 (203)
T PF13525_consen 11 KALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYMLGLSYY 90 (203)
T ss_dssp HHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHH
Confidence 44556677777777777777776531111 12344455666677777777777777666542111111111111111110
Q ss_pred CChHHHHHHHhhCCCCCc-------chHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCcHHHHH
Q 007808 344 GIIENAVDVFNSMDTKDL-------ITWNTIISGLAMHGRGAGALSLFHEMKNAGEMPDGITFIGILCACTHMGLVEEGL 416 (589)
Q Consensus 344 g~~~~A~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~ 416 (589)
...... + ...+|. ..+..++.-|-......+|...+..+... .- ..-..+...|.+.|.+..|.
T Consensus 91 ~~~~~~---~--~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~---la-~~e~~ia~~Y~~~~~y~aA~ 161 (203)
T PF13525_consen 91 KQIPGI---L--RSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNR---LA-EHELYIARFYYKRGKYKAAI 161 (203)
T ss_dssp HHHHHH---H---TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHH---HH-HHHHHHHHHHHCTT-HHHHH
T ss_pred HhCccc---h--hcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHH---HH-HHHHHHHHHHHHcccHHHHH
Confidence 000000 0 001111 12333444444444444454444443321 00 01123455667777777777
Q ss_pred HHHHHhHHhcCCCCC-hHHHHHHHHHHHhcCCHHHH
Q 007808 417 SYFQSMAMDYSIVPQ-IEHYGCMVDLLARAGRLAEA 451 (589)
Q Consensus 417 ~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A 451 (589)
.-++.+++++.-.+. ......++.+|.+.|..+.|
T Consensus 162 ~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a 197 (203)
T PF13525_consen 162 IRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAA 197 (203)
T ss_dssp HHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHH
T ss_pred HHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHH
Confidence 777777665422221 23345566677777766644
No 238
>PRK11619 lytic murein transglycosylase; Provisional
Probab=96.57 E-value=1.3 Score=46.59 Aligned_cols=114 Identities=11% Similarity=-0.020 Sum_probs=49.1
Q ss_pred CChHHHHHHHHHHHHC-CCCCCHh--HHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHH
Q 007808 375 GRGAGALSLFHEMKNA-GEMPDGI--TFIGILCACTHMGLVEEGLSYFQSMAMDYSIVPQIEHYGCMVDLLARAGRLAEA 451 (589)
Q Consensus 375 ~~~~~A~~~~~~m~~~-~~~p~~~--~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 451 (589)
.+.+.|...+...... ++.+... ....+.......+..+++...++..... ..+......-+..-.+.++++.+
T Consensus 255 ~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~---~~~~~~~e~r~r~Al~~~dw~~~ 331 (644)
T PRK11619 255 QDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMR---SQSTSLLERRVRMALGTGDRRGL 331 (644)
T ss_pred hCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhcccc---cCCcHHHHHHHHHHHHccCHHHH
Confidence 4456666666655332 2222211 1222222222222244455554443211 12333333334444466666666
Q ss_pred HHHHhhCC--CCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Q 007808 452 VDFVKRMP--IEADAVIWANLLGSCRVYKNVELAELALERLT 491 (589)
Q Consensus 452 ~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 491 (589)
...+..|+ ..-...-.-=+..++...|+.++|...|+++.
T Consensus 332 ~~~i~~L~~~~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a 373 (644)
T PRK11619 332 NTWLARLPMEAKEKDEWRYWQADLLLEQGRKAEAEEILRQLM 373 (644)
T ss_pred HHHHHhcCHhhccCHhhHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 66666663 11111111223344444666666666666653
No 239
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=96.52 E-value=0.82 Score=43.83 Aligned_cols=128 Identities=15% Similarity=0.098 Sum_probs=95.4
Q ss_pred hHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHhhC-CCCCCHHHH-HHHHHHH
Q 007808 397 ITFIGILCACTHMGLVEEGLSYFQSMAMDYSIVPQIEHYGCMVDLLARAGRLAEAVDFVKRM-PIEADAVIW-ANLLGSC 474 (589)
Q Consensus 397 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~-~~l~~~~ 474 (589)
..|..++.+-.+..-++.|..+|-++.+..-..+++.++++++..++ .|+..-|..+|+-. ..-||...| +..+.-+
T Consensus 398 ~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~f~d~~~y~~kyl~fL 476 (660)
T COG5107 398 FVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLKFPDSTLYKEKYLLFL 476 (660)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHhCCCchHHHHHHHHHH
Confidence 34666777777888899999999999655226678888898888664 67778888998865 334554443 4555667
Q ss_pred hcCCCHHHHHHHHHHHHccCCCC--CcchHHHHHHHhhcCChHHHHHHHHHhh
Q 007808 475 RVYKNVELAELALERLTELEPKN--PANFVMLSNIYGDLGRWKDVARIKVAMR 525 (589)
Q Consensus 475 ~~~g~~~~A~~~~~~~~~~~p~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 525 (589)
...++-+.|..+|+..++.-.++ ...|..++.--..-|+...+..+=+++.
T Consensus 477 i~inde~naraLFetsv~r~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~ 529 (660)
T COG5107 477 IRINDEENARALFETSVERLEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFR 529 (660)
T ss_pred HHhCcHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHH
Confidence 78889999999999777632222 5578888888888999999888888775
No 240
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=96.49 E-value=0.85 Score=43.74 Aligned_cols=93 Identities=14% Similarity=0.181 Sum_probs=71.9
Q ss_pred hHHHHHHHHHHhCCCCCccchHHHHHHHHccCChhHHHHHhhcCCCCCc---ccHHHHHHHHHcCCChhHHHHHHHHhhh
Q 007808 17 HLHQIQTQVVTSGLEKSDYITPRIITACAQLKQMTYARKMFDKITDQNV---VSWNAMFNGYAQNEFHRTVVVLFTQMKK 93 (589)
Q Consensus 17 ~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~---~~~~~ll~~~~~~~~~~~a~~~~~~m~~ 93 (589)
+..++.+.+.+ .+.|...|-.|+.-|...+..++-+++++++..|-+ .+|..-+.+-...+++.....+|.+...
T Consensus 27 D~lrLRerIkd--NPtnI~S~fqLiq~~~tq~s~~~~re~yeq~~~pfp~~~~aw~ly~s~ELA~~df~svE~lf~rCL~ 104 (660)
T COG5107 27 DELRLRERIKD--NPTNILSYFQLIQYLETQESMDAEREMYEQLSSPFPIMEHAWRLYMSGELARKDFRSVESLFGRCLK 104 (660)
T ss_pred hHHHHHHHhhc--CchhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCCCccccHHHHHHhcchhhhhhHHHHHHHHHHHHh
Confidence 34455555543 467889999999999999999999999999998654 3788888888888999999999999987
Q ss_pred CCCCCCcccHHHHHHHHhcc
Q 007808 94 LDAMPNCFTFPIVLKSCVKI 113 (589)
Q Consensus 94 ~~~~p~~~~~~~ll~~~~~~ 113 (589)
.. .+...|..-+....+.
T Consensus 105 k~--l~ldLW~lYl~YIRr~ 122 (660)
T COG5107 105 KS--LNLDLWMLYLEYIRRV 122 (660)
T ss_pred hh--ccHhHHHHHHHHHHhh
Confidence 64 3455666666554443
No 241
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=96.46 E-value=0.63 Score=41.86 Aligned_cols=193 Identities=20% Similarity=0.148 Sum_probs=99.8
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHhhCCC-----CCcchHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHhHHHHHHH-
Q 007808 331 CVGNALIDMYAKCGIIENAVDVFNSMDT-----KDLITWNTIISGLAMHGRGAGALSLFHEMKNAGEMPDGITFIGILC- 404 (589)
Q Consensus 331 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~- 404 (589)
.........+...+.+..+...+..... .....+......+...+++..+...+.........+ .........
T Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 138 (291)
T COG0457 60 GLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDP-DLAEALLALG 138 (291)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCc-chHHHHHHHH
Confidence 3344444455555555555555544321 222344444445555555666666666655532222 111111222
Q ss_pred HHhccCcHHHHHHHHHHhHHhcCC--CCChHHHHHHHHHHHhcCCHHHHHHHHhhC-CCCCC--HHHHHHHHHHHhcCCC
Q 007808 405 ACTHMGLVEEGLSYFQSMAMDYSI--VPQIEHYGCMVDLLARAGRLAEAVDFVKRM-PIEAD--AVIWANLLGSCRVYKN 479 (589)
Q Consensus 405 ~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~--~~~~~~l~~~~~~~g~ 479 (589)
.+...|+++.|...+++... ..- ......+......+...++.++|...+.+. ...++ ...+..+...+...++
T Consensus 139 ~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (291)
T COG0457 139 ALYELGDYEEALELYEKALE-LDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGK 217 (291)
T ss_pred HHHHcCCHHHHHHHHHHHHh-cCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHccc
Confidence 45566666666666666532 110 012223333333455566666666666665 22222 4455555566666666
Q ss_pred HHHHHHHHHHHHccCCCCCcchHHHHHHHhhcCChHHHHHHHHHhh
Q 007808 480 VELAELALERLTELEPKNPANFVMLSNIYGDLGRWKDVARIKVAMR 525 (589)
Q Consensus 480 ~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 525 (589)
++.|...+..+....|.....+..++..+...|.++++...+.+..
T Consensus 218 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (291)
T COG0457 218 YEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKAL 263 (291)
T ss_pred HHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHH
Confidence 7777777777777666544455555556555556666666666653
No 242
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.44 E-value=0.0095 Score=49.38 Aligned_cols=60 Identities=20% Similarity=0.212 Sum_probs=50.8
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHccCCCCCcchHHHHHHHhhcCChHHHHHHHHHhh
Q 007808 466 IWANLLGSCRVYKNVELAELALERLTELEPKNPANFVMLSNIYGDLGRWKDVARIKVAMR 525 (589)
Q Consensus 466 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 525 (589)
....++..+...|++++|...+++++..+|.+...|..++.+|...|+..+|.+.|+++.
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~ 123 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYR 123 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHH
Confidence 345566777889999999999999999999999999999999999999999999998884
No 243
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.38 E-value=0.61 Score=40.88 Aligned_cols=86 Identities=15% Similarity=0.198 Sum_probs=49.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhhCC-------CCCCH-HHHHHHHHHHhcCCCHHHHHHHHHHHHc----cCCCCCcch
Q 007808 434 HYGCMVDLLARAGRLAEAVDFVKRMP-------IEADA-VIWANLLGSCRVYKNVELAELALERLTE----LEPKNPANF 501 (589)
Q Consensus 434 ~~~~l~~~~~~~g~~~~A~~~~~~~~-------~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~p~~~~~~ 501 (589)
.+......|++..++++|-..+.+-. .-|+. ..+-..+-.+....++..|+..++...+ ..|.+..+.
T Consensus 152 l~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~l 231 (308)
T KOG1585|consen 152 LYGKCSRVLVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSL 231 (308)
T ss_pred HHHHhhhHhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHH
Confidence 34445566777777777766555442 11222 2233444445556678888888877665 345556666
Q ss_pred HHHHHHHhhcCChHHHHHH
Q 007808 502 VMLSNIYGDLGRWKDVARI 520 (589)
Q Consensus 502 ~~l~~~~~~~g~~~~A~~~ 520 (589)
..|+..| ..|+.+++..+
T Consensus 232 enLL~ay-d~gD~E~~~kv 249 (308)
T KOG1585|consen 232 ENLLTAY-DEGDIEEIKKV 249 (308)
T ss_pred HHHHHHh-ccCCHHHHHHH
Confidence 6666665 34565555443
No 244
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=96.33 E-value=0.06 Score=49.61 Aligned_cols=124 Identities=12% Similarity=0.097 Sum_probs=61.1
Q ss_pred HHHHHHhccCcHHHHHHHHHHhHHhcCCCCC----hHHHHHHHHHHHhcCCHHHHHHHHhhC-------CCCCCHHHHH-
Q 007808 401 GILCACTHMGLVEEGLSYFQSMAMDYSIVPQ----IEHYGCMVDLLARAGRLAEAVDFVKRM-------PIEADAVIWA- 468 (589)
Q Consensus 401 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~-------~~~p~~~~~~- 468 (589)
++..++...+.++++++.|+.+.+-..-..| ..++..|...|.+..++++|.-+..++ ++..-..-|.
T Consensus 127 ~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~ 206 (518)
T KOG1941|consen 127 SMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRA 206 (518)
T ss_pred hHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHH
Confidence 3444555555666666666555432111111 234555666666666666655544433 1111111122
Q ss_pred ----HHHHHHhcCCCHHHHHHHHHHHHccC------CCCCcchHHHHHHHhhcCChHHHHHHHHHh
Q 007808 469 ----NLLGSCRVYKNVELAELALERLTELE------PKNPANFVMLSNIYGDLGRWKDVARIKVAM 524 (589)
Q Consensus 469 ----~l~~~~~~~g~~~~A~~~~~~~~~~~------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 524 (589)
.+.-++...|....|.+..+++.++. |........++++|...|+.+.|..-|+..
T Consensus 207 ~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~A 272 (518)
T KOG1941|consen 207 MSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQA 272 (518)
T ss_pred HHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHH
Confidence 22244556666666666666665521 222334455666666666666666555544
No 245
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.32 E-value=1.6 Score=45.03 Aligned_cols=142 Identities=14% Similarity=0.149 Sum_probs=65.4
Q ss_pred HHHcCCChHHHHHHHccCCCC-----CeehHHHHHHHHHhCCCHHHHHHHHHhCCCCChhHHHHHHHHHhcCCChHHHHH
Q 007808 144 LYSTGKAIEAAYKVFGEMDER-----NVVVWTSMINGYISCGDIVSARCLFELAPERDVILWNTIVSGYIDVRNMIEARK 218 (589)
Q Consensus 144 ~~~~~g~~~~A~~~~~~~~~~-----~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 218 (589)
-+.+.+.+++|+.+.+..... -...+..+|..+...|++++|....-.|...+..-|......+...++......
T Consensus 365 Wll~~k~yeeAl~~~k~~~~~~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn~~~eWe~~V~~f~e~~~l~~Ia~ 444 (846)
T KOG2066|consen 365 WLLEKKKYEEALDAAKASIGNEERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLGNNAAEWELWVFKFAELDQLTDIAP 444 (846)
T ss_pred HHHHhhHHHHHHHHHHhccCCccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhcchHHHHHHHHHHhccccccchhhc
Confidence 334444555555555444331 112345555555555555555555555555555555555555555544443333
Q ss_pred HhcccCC-CChhhHHHHHHHHHhcCCHHHHHHHHhhCCC--------------------CCchhHHHHHHHHHhCCChHH
Q 007808 219 LFDQMPK-KDVISWNTMLSGYANNGDVEECKRLFEEMPE--------------------RNVFSWNGLIGGYANNGLFFE 277 (589)
Q Consensus 219 ~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--------------------~~~~~~~~l~~~~~~~g~~~~ 277 (589)
++-.-.. .+...|..++..+.. .+...-.+....-.. .+...-..|+..|...+++..
T Consensus 445 ~lPt~~~rL~p~vYemvLve~L~-~~~~~F~e~i~~Wp~~Lys~l~iisa~~~q~~q~Se~~~L~e~La~LYl~d~~Y~~ 523 (846)
T KOG2066|consen 445 YLPTGPPRLKPLVYEMVLVEFLA-SDVKGFLELIKEWPGHLYSVLTIISATEPQIKQNSESTALLEVLAHLYLYDNKYEK 523 (846)
T ss_pred cCCCCCcccCchHHHHHHHHHHH-HHHHHHHHHHHhCChhhhhhhHHHhhcchHHHhhccchhHHHHHHHHHHHccChHH
Confidence 3222111 233444444444443 221111111111110 111223347777777788888
Q ss_pred HHHHHHHHH
Q 007808 278 VLDAFKRML 286 (589)
Q Consensus 278 A~~~~~~~~ 286 (589)
|+.++-...
T Consensus 524 Al~~ylklk 532 (846)
T KOG2066|consen 524 ALPIYLKLQ 532 (846)
T ss_pred HHHHHHhcc
Confidence 877776653
No 246
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.26 E-value=1.8 Score=45.05 Aligned_cols=174 Identities=11% Similarity=0.092 Sum_probs=84.3
Q ss_pred HHHHHHHHHcCCChhHHHHHHHHhhhCCCCCCcccHHHHHH----HHhccCChHHHHHHHHHHHHhCCCCchHHHhHHHH
Q 007808 68 WNAMFNGYAQNEFHRTVVVLFTQMKKLDAMPNCFTFPIVLK----SCVKINALREGEELHCLVLKNGFRANIFVGTALIE 143 (589)
Q Consensus 68 ~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~----~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 143 (589)
-..-+..+.+...++.|+.+-+.-. .+..+...+.+ -+.+.|++++|...|-+-+.. ++|+ .+|.
T Consensus 337 le~kL~iL~kK~ly~~Ai~LAk~~~-----~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~s-----~Vi~ 405 (933)
T KOG2114|consen 337 LETKLDILFKKNLYKVAINLAKSQH-----LDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEPS-----EVIK 405 (933)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHhcC-----CCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CChH-----HHHH
Confidence 3445556666666666665554321 22333333333 234566777766666554332 2221 1233
Q ss_pred HHHcCCChHHHHHHHccCCC---CCeehHHHHHHHHHhCCCHHHHHHHHHhCCCCCh-hHHHHHHHHHhcCCChHHHHHH
Q 007808 144 LYSTGKAIEAAYKVFGEMDE---RNVVVWTSMINGYISCGDIVSARCLFELAPERDV-ILWNTIVSGYIDVRNMIEARKL 219 (589)
Q Consensus 144 ~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~a~~~ 219 (589)
-|.....+..--.+++.+.+ .+..--..|+.+|.+.++.+.-.++.+...+... .-....+..+.+.+-.++|..+
T Consensus 406 kfLdaq~IknLt~YLe~L~~~gla~~dhttlLLncYiKlkd~~kL~efI~~~~~g~~~fd~e~al~Ilr~snyl~~a~~L 485 (933)
T KOG2114|consen 406 KFLDAQRIKNLTSYLEALHKKGLANSDHTTLLLNCYIKLKDVEKLTEFISKCDKGEWFFDVETALEILRKSNYLDEAELL 485 (933)
T ss_pred HhcCHHHHHHHHHHHHHHHHcccccchhHHHHHHHHHHhcchHHHHHHHhcCCCcceeeeHHHHHHHHHHhChHHHHHHH
Confidence 33333333333344444433 2333445666666666666666666555442111 1133445555556666666555
Q ss_pred hcccCCCChhhHHHHHHHHHhcCCHHHHHHHHhhCCC
Q 007808 220 FDQMPKKDVISWNTMLSGYANNGDVEECKRLFEEMPE 256 (589)
Q Consensus 220 ~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 256 (589)
-.+... +......+ +-..+++++|.+.+..++-
T Consensus 486 A~k~~~-he~vl~il---le~~~ny~eAl~yi~slp~ 518 (933)
T KOG2114|consen 486 ATKFKK-HEWVLDIL---LEDLHNYEEALRYISSLPI 518 (933)
T ss_pred HHHhcc-CHHHHHHH---HHHhcCHHHHHHHHhcCCH
Confidence 444332 22222222 2345677777777777663
No 247
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=96.16 E-value=0.93 Score=40.70 Aligned_cols=219 Identities=19% Similarity=0.104 Sum_probs=138.3
Q ss_pred CChHHHHHHHHHHHHcCCCC-CcHHHHHHHHHHHHhcCChhHHHHHHHHHHHc-CCCCChhHHHHHHHHHHhcCChHHHH
Q 007808 273 GLFFEVLDAFKRMLTEGRVF-PNDATIVTVLSACARLGALDFSKWVHVYAEYN-GYQGNVCVGNALIDMYAKCGIIENAV 350 (589)
Q Consensus 273 g~~~~A~~~~~~~~~~~~~~-p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~ 350 (589)
+....+...+....... .. ............+...++...+...+...... ........+......+...+++..+.
T Consensus 37 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (291)
T COG0457 37 GELAEALELLEEALELL-PNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEAL 115 (291)
T ss_pred hhHHHHHHHHHHHHhcC-ccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHH
Confidence 34444444444444433 11 12344455555556666666666555555442 22334445555556666666677777
Q ss_pred HHHhhCCCC--Cc-chHHHHHH-HHHhCCChHHHHHHHHHHHHCCCCC----CHhHHHHHHHHHhccCcHHHHHHHHHHh
Q 007808 351 DVFNSMDTK--DL-ITWNTIIS-GLAMHGRGAGALSLFHEMKNAGEMP----DGITFIGILCACTHMGLVEEGLSYFQSM 422 (589)
Q Consensus 351 ~~~~~~~~~--~~-~~~~~l~~-~~~~~~~~~~A~~~~~~m~~~~~~p----~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 422 (589)
+.+...... +. ........ .+...|+++.|...+.+... ..| ....+......+...++.+.+...+...
T Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 193 (291)
T COG0457 116 ELLEKALALDPDPDLAEALLALGALYELGDYEEALELYEKALE--LDPELNELAEALLALGALLEALGRYEEALELLEKA 193 (291)
T ss_pred HHHHHHHcCCCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHH
Confidence 777666532 21 22333333 67888999999999998865 333 2333444444567788999999999888
Q ss_pred HHhcCCCC-ChHHHHHHHHHHHhcCCHHHHHHHHhhC-CCCCC-HHHHHHHHHHHhcCCCHHHHHHHHHHHHccCCC
Q 007808 423 AMDYSIVP-QIEHYGCMVDLLARAGRLAEAVDFVKRM-PIEAD-AVIWANLLGSCRVYKNVELAELALERLTELEPK 496 (589)
Q Consensus 423 ~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 496 (589)
... ... ....+..+...+...+++++|...+... ...|+ ...+..+...+...+..+.+...+.+.....|.
T Consensus 194 ~~~--~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (291)
T COG0457 194 LKL--NPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALELDPD 268 (291)
T ss_pred Hhh--CcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence 652 223 3667778888899999999999998887 34454 444555555555777899999999999999886
No 248
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=96.14 E-value=0.2 Score=50.40 Aligned_cols=114 Identities=19% Similarity=0.124 Sum_probs=70.5
Q ss_pred cCcHHHHHHHHHHhHHhcCCCCChHHHHH-HHHHHHhcCCHHHHHHHHhhCCC-C-----CCHHHHHHHHHHHhcCCCHH
Q 007808 409 MGLVEEGLSYFQSMAMDYSIVPQIEHYGC-MVDLLARAGRLAEAVDFVKRMPI-E-----ADAVIWANLLGSCRVYKNVE 481 (589)
Q Consensus 409 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~g~~~~A~~~~~~~~~-~-----p~~~~~~~l~~~~~~~g~~~ 481 (589)
..+.+.|.++++.+...+ |+...|.. -.+.+...|+.++|++.|+++.. . .....+--+...+....+++
T Consensus 246 ~~~~~~a~~lL~~~~~~y---P~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~ 322 (468)
T PF10300_consen 246 DVPLEEAEELLEEMLKRY---PNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWE 322 (468)
T ss_pred CCCHHHHHHHHHHHHHhC---CCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHH
Confidence 345667777777776432 66555543 23556667777777777776521 1 12233444556667777888
Q ss_pred HHHHHHHHHHccCCCCCcchHHH-HHHHhhcCCh-------HHHHHHHHHhh
Q 007808 482 LAELALERLTELEPKNPANFVML-SNIYGDLGRW-------KDVARIKVAMR 525 (589)
Q Consensus 482 ~A~~~~~~~~~~~p~~~~~~~~l-~~~~~~~g~~-------~~A~~~~~~~~ 525 (589)
+|.+.+.++.+.+.-+...|..+ +-++...|+. ++|.++++++.
T Consensus 323 ~A~~~f~~L~~~s~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp 374 (468)
T PF10300_consen 323 EAAEYFLRLLKESKWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVP 374 (468)
T ss_pred HHHHHHHHHHhccccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHH
Confidence 88888888887666545444433 4446667777 77777777764
No 249
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=96.06 E-value=0.1 Score=42.72 Aligned_cols=50 Identities=22% Similarity=0.243 Sum_probs=27.4
Q ss_pred cCCCHHHHHHHHHHHHccCCCCCcchHHHHHHHhhcCChHHHHHHHHHhh
Q 007808 476 VYKNVELAELALERLTELEPKNPANFVMLSNIYGDLGRWKDVARIKVAMR 525 (589)
Q Consensus 476 ~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 525 (589)
..++.+.++.++..+.-+.|..++.-..-++++.+.|+|.+|+.+++++.
T Consensus 22 ~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~ 71 (160)
T PF09613_consen 22 RLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELE 71 (160)
T ss_pred ccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHh
Confidence 44455555555555555555555555555555555555555555555553
No 250
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=96.04 E-value=0.011 Score=34.40 Aligned_cols=32 Identities=25% Similarity=0.175 Sum_probs=25.5
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHccCCC
Q 007808 465 VIWANLLGSCRVYKNVELAELALERLTELEPK 496 (589)
Q Consensus 465 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 496 (589)
..|..+..++...|++++|+..|+++++++|+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 45677778888888888888888888888886
No 251
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=95.99 E-value=0.06 Score=41.75 Aligned_cols=89 Identities=24% Similarity=0.184 Sum_probs=66.5
Q ss_pred HHHHhcCCHHHHHHHHhhC-CC-CCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHccCCCCC----cchHHHHHHHhhcCC
Q 007808 440 DLLARAGRLAEAVDFVKRM-PI-EADAVIWANLLGSCRVYKNVELAELALERLTELEPKNP----ANFVMLSNIYGDLGR 513 (589)
Q Consensus 440 ~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~----~~~~~l~~~~~~~g~ 513 (589)
-++...|+.+.|++.|.+. .+ +.....||.-..++.-+|+.++|.+-+++++++.-+.. ..|..-+.+|...|+
T Consensus 51 valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~ 130 (175)
T KOG4555|consen 51 IALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGN 130 (175)
T ss_pred HHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCc
Confidence 4566788888888888776 22 33567788888888888888888888888888653211 256667778888888
Q ss_pred hHHHHHHHHHhhhCC
Q 007808 514 WKDVARIKVAMRDTG 528 (589)
Q Consensus 514 ~~~A~~~~~~~~~~~ 528 (589)
-+.|..-|+...+-|
T Consensus 131 dd~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 131 DDAARADFEAAAQLG 145 (175)
T ss_pred hHHHHHhHHHHHHhC
Confidence 888888888876544
No 252
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=95.97 E-value=0.072 Score=44.05 Aligned_cols=71 Identities=18% Similarity=0.174 Sum_probs=44.9
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCcHHHHHHHHHHhHH----hcCCCCChHHH
Q 007808 364 WNTIISGLAMHGRGAGALSLFHEMKNAGEMPDGITFIGILCACTHMGLVEEGLSYFQSMAM----DYSIVPQIEHY 435 (589)
Q Consensus 364 ~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~~~~ 435 (589)
...++..+...|++++|+.+++.+.... +.+...|..++.++...|+...|.+.|+++.+ +.|+.|+..+-
T Consensus 65 ~~~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~ 139 (146)
T PF03704_consen 65 LERLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETR 139 (146)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHH
T ss_pred HHHHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHH
Confidence 4445666777888888888888887742 33667788888888888888888887776532 45777776553
No 253
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=95.96 E-value=0.018 Score=33.42 Aligned_cols=32 Identities=31% Similarity=0.325 Sum_probs=24.4
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHccCCCC
Q 007808 466 IWANLLGSCRVYKNVELAELALERLTELEPKN 497 (589)
Q Consensus 466 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~ 497 (589)
.|..+...+...|++++|++.++++++++|+|
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 45667777888888888888888888888864
No 254
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=95.81 E-value=0.12 Score=41.07 Aligned_cols=50 Identities=16% Similarity=0.195 Sum_probs=33.2
Q ss_pred CCCCCHhHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHH
Q 007808 391 GEMPDGITFIGILCACTHMGLVEEGLSYFQSMAMDYSIVPQIEHYGCMVD 440 (589)
Q Consensus 391 ~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~ 440 (589)
...|+..+..+++.+|+..|++..|.++++...+.++++.+...|..|++
T Consensus 47 pl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~ 96 (126)
T PF12921_consen 47 PLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLE 96 (126)
T ss_pred CCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 34566666667777777777777777777777666666666666666654
No 255
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=95.81 E-value=0.021 Score=51.96 Aligned_cols=93 Identities=15% Similarity=0.081 Sum_probs=54.1
Q ss_pred HHHHhccCcHHHHHHHHHHhHHhcCCCC-ChHHHHHHHHHHHhcCCHHHHHHHHhhCC-C-CCCHHHHHHHHHHHhcCCC
Q 007808 403 LCACTHMGLVEEGLSYFQSMAMDYSIVP-QIEHYGCMVDLLARAGRLAEAVDFVKRMP-I-EADAVIWANLLGSCRVYKN 479 (589)
Q Consensus 403 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~-~p~~~~~~~l~~~~~~~g~ 479 (589)
..-|.+.|.+++|+..|.... ...| ++.++..-..+|.+..++..|..--..+. + ..-...|..-+.+-...|+
T Consensus 104 GN~yFKQgKy~EAIDCYs~~i---a~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg~ 180 (536)
T KOG4648|consen 104 GNTYFKQGKYEEAIDCYSTAI---AVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLGN 180 (536)
T ss_pred hhhhhhccchhHHHHHhhhhh---ccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHhh
Confidence 445666777777777776554 3344 56666666667777777766655444331 1 1112334444444445666
Q ss_pred HHHHHHHHHHHHccCCCCC
Q 007808 480 VELAELALERLTELEPKNP 498 (589)
Q Consensus 480 ~~~A~~~~~~~~~~~p~~~ 498 (589)
..+|.+-++.++++.|.+.
T Consensus 181 ~~EAKkD~E~vL~LEP~~~ 199 (536)
T KOG4648|consen 181 NMEAKKDCETVLALEPKNI 199 (536)
T ss_pred HHHHHHhHHHHHhhCcccH
Confidence 7777777777777777643
No 256
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.78 E-value=0.074 Score=48.51 Aligned_cols=157 Identities=10% Similarity=-0.065 Sum_probs=115.5
Q ss_pred hCCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHH----HHHHHHHhcCCH
Q 007808 373 MHGRGAGALSLFHEMKNAGEMPDGITFIGILCACTHMGLVEEGLSYFQSMAMDYSIVPQIEHYG----CMVDLLARAGRL 448 (589)
Q Consensus 373 ~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~----~l~~~~~~~g~~ 448 (589)
-.|+..+|-..++++.+. .+.|...+...=.+|.-.|+.+.-...++++... ..||...|. .+..++..+|-+
T Consensus 115 ~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~--wn~dlp~~sYv~GmyaFgL~E~g~y 191 (491)
T KOG2610|consen 115 GRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK--WNADLPCYSYVHGMYAFGLEECGIY 191 (491)
T ss_pred ccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhccc--cCCCCcHHHHHHHHHHhhHHHhccc
Confidence 468888888889998875 4667777887788899999999988888888753 345654443 345567789999
Q ss_pred HHHHHHHhhC-CCCC-CHHHHHHHHHHHhcCCCHHHHHHHHHHHHccCCC----CCcchHHHHHHHhhcCChHHHHHHHH
Q 007808 449 AEAVDFVKRM-PIEA-DAVIWANLLGSCRVYKNVELAELALERLTELEPK----NPANFVMLSNIYGDLGRWKDVARIKV 522 (589)
Q Consensus 449 ~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~----~~~~~~~l~~~~~~~g~~~~A~~~~~ 522 (589)
++|++.-++. .++| |...-+++...+...|+..++.++..+--..-.. -...|-..+-.+...+.++.|+++|+
T Consensus 192 ~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD 271 (491)
T KOG2610|consen 192 DDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIYD 271 (491)
T ss_pred hhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHHH
Confidence 9999999887 5554 6667777888888999999999988776542211 12345566777888899999999998
Q ss_pred HhhhCCCccC
Q 007808 523 AMRDTGFKKL 532 (589)
Q Consensus 523 ~~~~~~~~~~ 532 (589)
+=.-..++.+
T Consensus 272 ~ei~k~l~k~ 281 (491)
T KOG2610|consen 272 REIWKRLEKD 281 (491)
T ss_pred HHHHHHhhcc
Confidence 7653333333
No 257
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=95.66 E-value=1.1 Score=40.74 Aligned_cols=148 Identities=14% Similarity=0.096 Sum_probs=101.0
Q ss_pred HHHHhCCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCH
Q 007808 369 SGLAMHGRGAGALSLFHEMKNAGEMPDGITFIGILCACTHMGLVEEGLSYFQSMAMDYSIVPQIEHYGCMVDLLARAGRL 448 (589)
Q Consensus 369 ~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 448 (589)
......|++.+|...|+...... +-+...-..++.+|...|+.+.|..++..+..+. -.........-+..+.+....
T Consensus 142 ~~~~~~e~~~~a~~~~~~al~~~-~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~-~~~~~~~l~a~i~ll~qaa~~ 219 (304)
T COG3118 142 KELIEAEDFGEAAPLLKQALQAA-PENSEAKLLLAECLLAAGDVEAAQAILAALPLQA-QDKAAHGLQAQIELLEQAAAT 219 (304)
T ss_pred hhhhhccchhhHHHHHHHHHHhC-cccchHHHHHHHHHHHcCChHHHHHHHHhCcccc-hhhHHHHHHHHHHHHHHHhcC
Confidence 34667889999999999888752 2245566678889999999999999998874321 111112222345556666666
Q ss_pred HHHHHHHhhCCCCC-CHHHHHHHHHHHhcCCCHHHHHHHHHHHHccC--CCCCcchHHHHHHHhhcCChHHHH
Q 007808 449 AEAVDFVKRMPIEA-DAVIWANLLGSCRVYKNVELAELALERLTELE--PKNPANFVMLSNIYGDLGRWKDVA 518 (589)
Q Consensus 449 ~~A~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--p~~~~~~~~l~~~~~~~g~~~~A~ 518 (589)
.+...+-.+..-.| |...-..+...+...|+.+.|.+.+-.+++.+ -.+......++.++.-.|.-+.+.
T Consensus 220 ~~~~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g~~Dp~~ 292 (304)
T COG3118 220 PEIQDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFGPADPLV 292 (304)
T ss_pred CCHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcCCCCHHH
Confidence 65555555554456 55555566678888999999999888887743 456778888888888877554433
No 258
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=95.64 E-value=1 Score=43.04 Aligned_cols=72 Identities=14% Similarity=0.052 Sum_probs=39.1
Q ss_pred HHHHHHHhcCCHHHHHHHHhhCCCC-------CchhHHHHHHHHHh---CCChHHHHHHHHHHHHcCCCCCcHHHHHHHH
Q 007808 233 TMLSGYANNGDVEECKRLFEEMPER-------NVFSWNGLIGGYAN---NGLFFEVLDAFKRMLTEGRVFPNDATIVTVL 302 (589)
Q Consensus 233 ~l~~~~~~~~~~~~A~~~~~~~~~~-------~~~~~~~l~~~~~~---~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~ 302 (589)
.++-.|....+++...++.+.+... ....-...+-++-+ .|+.++|++++..++... ..+++.++..+.
T Consensus 146 ~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~-~~~~~d~~gL~G 224 (374)
T PF13281_consen 146 NLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESD-ENPDPDTLGLLG 224 (374)
T ss_pred HHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhcc-CCCChHHHHHHH
Confidence 3444455666666666666666542 11111223344445 677777777777754444 456666666655
Q ss_pred HHH
Q 007808 303 SAC 305 (589)
Q Consensus 303 ~~~ 305 (589)
..|
T Consensus 225 RIy 227 (374)
T PF13281_consen 225 RIY 227 (374)
T ss_pred HHH
Confidence 544
No 259
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=95.61 E-value=1.6 Score=38.99 Aligned_cols=167 Identities=14% Similarity=0.126 Sum_probs=97.7
Q ss_pred HHHhcCChHHHHHHHhhCCCC------CcchHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhcc---
Q 007808 339 MYAKCGIIENAVDVFNSMDTK------DLITWNTIISGLAMHGRGAGALSLFHEMKNAGEMPDGITFIGILCACTHM--- 409 (589)
Q Consensus 339 ~~~~~g~~~~A~~~~~~~~~~------~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~--- 409 (589)
.-.+.|++++|.+.|+.+... ...+.-.++.++.+.++++.|+..+++....-.......|...+.+++.-
T Consensus 43 ~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~YlkgLs~~~~i 122 (254)
T COG4105 43 TELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYLKGLSYFFQI 122 (254)
T ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHhccC
Confidence 345778999999999888743 22345556778889999999999999988742222223444444444311
Q ss_pred ----Cc---HHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCCHHH-H-HHHHHHHhcCCCH
Q 007808 410 ----GL---VEEGLSYFQSMAMDYSIVPQIEHYGCMVDLLARAGRLAEAVDFVKRMPIEADAVI-W-ANLLGSCRVYKNV 480 (589)
Q Consensus 410 ----g~---~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~-~-~~l~~~~~~~g~~ 480 (589)
.+ ...|..-|+.++.++ ||.. -..+|...+..+. |... + ..+..-|.+.|.+
T Consensus 123 ~~~~rDq~~~~~A~~~f~~~i~ry---PnS~-------------Ya~dA~~~i~~~~---d~LA~~Em~IaryY~kr~~~ 183 (254)
T COG4105 123 DDVTRDQSAARAAFAAFKELVQRY---PNSR-------------YAPDAKARIVKLN---DALAGHEMAIARYYLKRGAY 183 (254)
T ss_pred CccccCHHHHHHHHHHHHHHHHHC---CCCc-------------chhhHHHHHHHHH---HHHHHHHHHHHHHHHHhcCh
Confidence 12 223333444444332 3321 1111211111110 1111 1 1234667888888
Q ss_pred HHHHHHHHHHHccCCCCC---cchHHHHHHHhhcCChHHHHHHHHHh
Q 007808 481 ELAELALERLTELEPKNP---ANFVMLSNIYGDLGRWKDVARIKVAM 524 (589)
Q Consensus 481 ~~A~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~ 524 (589)
..|..-++++++.-|+.+ +++..+..+|...|..++|.+.-+=+
T Consensus 184 ~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl 230 (254)
T COG4105 184 VAAINRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAKKTAKVL 230 (254)
T ss_pred HHHHHHHHHHHhccccccchHHHHHHHHHHHHHhCChHHHHHHHHHH
Confidence 888888888888766544 35556667788889888888865444
No 260
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=95.53 E-value=0.25 Score=39.21 Aligned_cols=48 Identities=21% Similarity=0.329 Sum_probs=35.7
Q ss_pred cCCCCChHHHHHHHHHHHhcCCHHHHHHHHhhC----CCCCCHHHHHHHHHH
Q 007808 426 YSIVPQIEHYGCMVDLLARAGRLAEAVDFVKRM----PIEADAVIWANLLGS 473 (589)
Q Consensus 426 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~p~~~~~~~l~~~ 473 (589)
....|+..+..+++.+|+..|++..|+++++.. +++-+..+|..|+.-
T Consensus 46 spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W 97 (126)
T PF12921_consen 46 SPLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEW 97 (126)
T ss_pred CCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 356678888888888888888888888877765 455567778877743
No 261
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=95.49 E-value=0.35 Score=47.13 Aligned_cols=142 Identities=15% Similarity=0.047 Sum_probs=79.7
Q ss_pred hCCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHH
Q 007808 373 MHGRGAGALSLFHEMKNAGEMPDGITFIGILCACTHMGLVEEGLSYFQSMAMDYSIVPQIEHYGCMVDLLARAGRLAEAV 452 (589)
Q Consensus 373 ~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 452 (589)
+..++..-++.-++..+ +.|+-.+...++ +-.......++.+++++..+.. ...+..- ......|..-
T Consensus 180 RERnp~aRIkaA~eALe--i~pdCAdAYILL-AEEeA~Ti~Eae~l~rqAvkAg-----E~~lg~s-~~~~~~g~~~--- 247 (539)
T PF04184_consen 180 RERNPQARIKAAKEALE--INPDCADAYILL-AEEEASTIVEAEELLRQAVKAG-----EASLGKS-QFLQHHGHFW--- 247 (539)
T ss_pred hcCCHHHHHHHHHHHHH--hhhhhhHHHhhc-ccccccCHHHHHHHHHHHHHHH-----HHhhchh-hhhhcccchh---
Confidence 44555666666666665 456543322222 2234456788888888775421 0000000 0000111111
Q ss_pred HHHhhCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHccCCC--CCcchHHHHHHHhhcCChHHHHHHHHHhhh
Q 007808 453 DFVKRMPIEADAVIWANLLGSCRVYKNVELAELALERLTELEPK--NPANFVMLSNIYGDLGRWKDVARIKVAMRD 526 (589)
Q Consensus 453 ~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 526 (589)
+.+.+-...|-..+-..+..++.+.|+.++|++.++.+++..|. +..++..|+.+|...+.+.++..++.+--+
T Consensus 248 e~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdD 323 (539)
T PF04184_consen 248 EAWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDD 323 (539)
T ss_pred hhhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhcc
Confidence 11111111222333345667778888999999999888876664 455788888888889999988888887643
No 262
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.48 E-value=0.35 Score=44.31 Aligned_cols=181 Identities=12% Similarity=0.058 Sum_probs=120.8
Q ss_pred HhcCChHHHHHHHhhCCC---CCcchHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHhHHH----HHHHHHhccCcHH
Q 007808 341 AKCGIIENAVDVFNSMDT---KDLITWNTIISGLAMHGRGAGALSLFHEMKNAGEMPDGITFI----GILCACTHMGLVE 413 (589)
Q Consensus 341 ~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~----~l~~~~~~~g~~~ 413 (589)
-..|+..+|-..++++.+ .|...++.-=.+|.-.|+.+.-...+++.... ..|+...|. .+.-++...|-++
T Consensus 114 ~~~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g~y~ 192 (491)
T KOG2610|consen 114 WGRGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECGIYD 192 (491)
T ss_pred hccccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhccch
Confidence 345777777777777763 37778888888999999999999999988865 455554332 2334556889999
Q ss_pred HHHHHHHHhHHhcCCCC-ChHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCC------HHHHHHHHHHHhcCCCHHHHHHH
Q 007808 414 EGLSYFQSMAMDYSIVP-QIEHYGCMVDLLARAGRLAEAVDFVKRMPIEAD------AVIWANLLGSCRVYKNVELAELA 486 (589)
Q Consensus 414 ~A~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~------~~~~~~l~~~~~~~g~~~~A~~~ 486 (589)
+|++.-++..+ +.| |.-.-.++...+.-.|++.++.++..+-...-+ ...|-...-.+...+.++.|+++
T Consensus 193 dAEk~A~ralq---iN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleI 269 (491)
T KOG2610|consen 193 DAEKQADRALQ---INRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEI 269 (491)
T ss_pred hHHHHHHhhcc---CCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHH
Confidence 99998877763 333 344455677888889999999999887641111 11222233345677999999999
Q ss_pred HHHHH--ccCCCCCcc---hHHHHHHHhhcCChHHHHHHHHHhh
Q 007808 487 LERLT--ELEPKNPAN---FVMLSNIYGDLGRWKDVARIKVAMR 525 (589)
Q Consensus 487 ~~~~~--~~~p~~~~~---~~~l~~~~~~~g~~~~A~~~~~~~~ 525 (589)
|++-+ ++..+|..+ |..+-.+..+...|.+-.++-+.+.
T Consensus 270 yD~ei~k~l~k~Da~a~~~~ld~dgv~~~~d~~~kld~la~~l~ 313 (491)
T KOG2610|consen 270 YDREIWKRLEKDDAVARDVYLDLDGVDLRSDLWRKLDKLADSLT 313 (491)
T ss_pred HHHHHHHHhhccchhhhhhhhhhhhHHhHHHHHHHHHhhhhhhc
Confidence 97644 466666633 3334455556666666665555543
No 263
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.39 E-value=4 Score=42.30 Aligned_cols=123 Identities=11% Similarity=0.226 Sum_probs=75.8
Q ss_pred HHHhHHHHHHHcCCChHHHHHHHccCCCCCeehHHHHHHHHHhCCCHHHHHHHHHhCCC-CChhHHHHHHHHHhcCCChH
Q 007808 136 FVGTALIELYSTGKAIEAAYKVFGEMDERNVVVWTSMINGYISCGDIVSARCLFELAPE-RDVILWNTIVSGYIDVRNMI 214 (589)
Q Consensus 136 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~ 214 (589)
.+....|..+.-.|++++|-...-.|...+..-|...+..+...++......++-.... .++..|..++..+.. .+..
T Consensus 393 kv~~~yI~HLl~~~~y~~Aas~~p~m~gn~~~eWe~~V~~f~e~~~l~~Ia~~lPt~~~rL~p~vYemvLve~L~-~~~~ 471 (846)
T KOG2066|consen 393 KVGKTYIDHLLFEGKYDEAASLCPKMLGNNAAEWELWVFKFAELDQLTDIAPYLPTGPPRLKPLVYEMVLVEFLA-SDVK 471 (846)
T ss_pred HHHHHHHHHHHhcchHHHHHhhhHHHhcchHHHHHHHHHHhccccccchhhccCCCCCcccCchHHHHHHHHHHH-HHHH
Confidence 45556666666677777777777777666666666666666666666655555444333 245556666665555 3222
Q ss_pred HHHHHhcccCC--------------------CChhhHHHHHHHHHhcCCHHHHHHHHhhCCCCCc
Q 007808 215 EARKLFDQMPK--------------------KDVISWNTMLSGYANNGDVEECKRLFEEMPERNV 259 (589)
Q Consensus 215 ~a~~~~~~~~~--------------------~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 259 (589)
.-.++...-.. .+......|+..|...+++..|..++-...++++
T Consensus 472 ~F~e~i~~Wp~~Lys~l~iisa~~~q~~q~Se~~~L~e~La~LYl~d~~Y~~Al~~ylklk~~~v 536 (846)
T KOG2066|consen 472 GFLELIKEWPGHLYSVLTIISATEPQIKQNSESTALLEVLAHLYLYDNKYEKALPIYLKLQDKDV 536 (846)
T ss_pred HHHHHHHhCChhhhhhhHHHhhcchHHHhhccchhHHHHHHHHHHHccChHHHHHHHHhccChHH
Confidence 22222222110 2334445688999999999999999998887654
No 264
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=95.37 E-value=1 Score=35.35 Aligned_cols=134 Identities=13% Similarity=0.092 Sum_probs=70.6
Q ss_pred HhCCChHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhH---HHHHHHHHHhcCCh
Q 007808 270 ANNGLFFEVLDAFKRMLTEGRVFPNDATIVTVLSACARLGALDFSKWVHVYAEYNGYQGNVCV---GNALIDMYAKCGII 346 (589)
Q Consensus 270 ~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~---~~~l~~~~~~~g~~ 346 (589)
.-.|..++..++..+..... +..-++.++--....-+-+-..++++.+ |--.|... ...++.+|...|..
T Consensus 13 ildG~V~qGveii~k~v~Ss----ni~E~NWvICNiiDaa~C~yvv~~LdsI---GkiFDis~C~NlKrVi~C~~~~n~~ 85 (161)
T PF09205_consen 13 ILDGDVKQGVEIIEKTVNSS----NIKEYNWVICNIIDAADCDYVVETLDSI---GKIFDISKCGNLKRVIECYAKRNKL 85 (161)
T ss_dssp HHTT-HHHHHHHHHHHHHHS-----HHHHTHHHHHHHHH--HHHHHHHHHHH---GGGS-GGG-S-THHHHHHHHHTT--
T ss_pred HHhchHHHHHHHHHHHcCcC----CccccceeeeecchhhchhHHHHHHHHH---hhhcCchhhcchHHHHHHHHHhcch
Confidence 34577777777777776654 3333444443333333333333333322 21122211 12344444444432
Q ss_pred HHHHHHHhhCCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCcHHHHHHHHHHhHHh
Q 007808 347 ENAVDVFNSMDTKDLITWNTIISGLAMHGRGAGALSLFHEMKNAGEMPDGITFIGILCACTHMGLVEEGLSYFQSMAMD 425 (589)
Q Consensus 347 ~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 425 (589)
.......+..+..+|+-+.-.+++..+.+.+ .|++.....+..+|.+.|+..++.+++.++.++
T Consensus 86 --------------se~vD~ALd~lv~~~kkDqLdki~~~l~kn~-~~~p~~L~kia~Ay~klg~~r~~~ell~~ACek 149 (161)
T PF09205_consen 86 --------------SEYVDLALDILVKQGKKDQLDKIYNELKKNE-EINPEFLVKIANAYKKLGNTREANELLKEACEK 149 (161)
T ss_dssp ---------------HHHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHT
T ss_pred --------------HHHHHHHHHHHHHhccHHHHHHHHHHHhhcc-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHh
Confidence 2233445677788888888888888877643 677777788888888889888888888887654
No 265
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=95.37 E-value=3.5 Score=41.45 Aligned_cols=368 Identities=12% Similarity=0.026 Sum_probs=172.9
Q ss_pred chHHHHHHHHccCChhHHHHHhhcCCC--CCcc-cHHHHHHHHHcCCChhHHHHHHHHhhhCCCCCCcccHHHHHHHHh-
Q 007808 36 ITPRIITACAQLKQMTYARKMFDKITD--QNVV-SWNAMFNGYAQNEFHRTVVVLFTQMKKLDAMPNCFTFPIVLKSCV- 111 (589)
Q Consensus 36 ~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~-~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~- 111 (589)
.+..++.--....+++.++.+++.+.. |... -|-....-=.+-|..+.+.++|++-.+ |++-+...|...+.-++
T Consensus 47 ~wt~li~~~~~~~~~~~~r~~y~~fL~kyPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~-aip~SvdlW~~Y~~f~~n 125 (577)
T KOG1258|consen 47 AWTTLIQENDSIEDVDALREVYDIFLSKYPLCYGYWKKFADYEYKLGNAENSVKVFERGVQ-AIPLSVDLWLSYLAFLKN 125 (577)
T ss_pred chHHHHhccCchhHHHHHHHHHHHHHhhCccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH-hhhhHHHHHHHHHHHHhc
Confidence 333444444444445555556655543 4433 233334444556666777777766654 34555555555554443
Q ss_pred ccCChHHHHHHHHHHHHh-CCC-CchHHHhHHHHHHHcCCChHHHHHHHccCCCCCeehHHHHHHHHH---hC------C
Q 007808 112 KINALREGEELHCLVLKN-GFR-ANIFVGTALIELYSTGKAIEAAYKVFGEMDERNVVVWTSMINGYI---SC------G 180 (589)
Q Consensus 112 ~~~~~~~a~~~~~~~~~~-~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~---~~------g 180 (589)
..|+.......|+...+. |.+ .+...|...|..-...++......+++++.+--...++..-.-|. .. .
T Consensus 126 ~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRileiP~~~~~~~f~~f~~~l~~~~~~~l~ 205 (577)
T KOG1258|consen 126 NNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEIPLHQLNRHFDRFKQLLNQNEEKILL 205 (577)
T ss_pred cCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhhhhhHhHHHHHHHHHHHhcCChhhhc
Confidence 345666666666666553 211 233345555555555666666666666665421111111111111 00 0
Q ss_pred CHHHHHHH-----------------------HHhCCCCCh---hHHHHH-------HHHHhcCCChHHHHHHhcccCC--
Q 007808 181 DIVSARCL-----------------------FELAPERDV---ILWNTI-------VSGYIDVRNMIEARKLFDQMPK-- 225 (589)
Q Consensus 181 ~~~~a~~~-----------------------~~~~~~~~~---~~~~~l-------~~~~~~~g~~~~a~~~~~~~~~-- 225 (589)
..+++.++ .+....+.. ...+.+ -.++-..-...+.+..++.-.+
T Consensus 206 ~~d~~~~l~~~~~~~~~~~~~~~~~e~~~~~v~~~~~~s~~l~~~~~~l~~~~~~~~~~~~~s~~~~~kr~~fE~~Ikrp 285 (577)
T KOG1258|consen 206 SIDELIQLRSDVAERSKITHSQEPLEELEIGVKDSTDPSKSLTEEKTILKRIVSIHEKVYQKSEEEEEKRWGFEEGIKRP 285 (577)
T ss_pred CHHHHHHHhhhHHhhhhcccccChhHHHHHHHhhccCccchhhHHHHHHHHHHHHHHHHHHhhHhHHHHHHhhhhhcccc
Confidence 11111111 111111100 001111 1112222223333333333322
Q ss_pred ---------CChhhHHHHHHHHHhcCCHHHHHHHHhhCCCCC---chhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCC
Q 007808 226 ---------KDVISWNTMLSGYANNGDVEECKRLFEEMPERN---VFSWNGLIGGYANNGLFFEVLDAFKRMLTEGRVFP 293 (589)
Q Consensus 226 ---------~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p 293 (589)
++..+|..-+..-.+.|+.+.+.-.|++..-|- ...|--.+.-....|+.+-|-.++....+-- ++-
T Consensus 286 Yfhvkpl~~aql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~-~k~ 364 (577)
T KOG1258|consen 286 YFHVKPLDQAQLKNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIH-VKK 364 (577)
T ss_pred ccccCcccHHHHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhc-CCC
Confidence 234566777777777788888888887776542 2344444444455577777776666655543 222
Q ss_pred cHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHH---HHHhhCCC--CCcchHHHHH
Q 007808 294 NDATIVTVLSACARLGALDFSKWVHVYAEYNGYQGNVCVGNALIDMYAKCGIIENAV---DVFNSMDT--KDLITWNTII 368 (589)
Q Consensus 294 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~---~~~~~~~~--~~~~~~~~l~ 368 (589)
.+.+...-...+-..|+++.|..+++.+...- +....+-..-+....+.|+.+.+. +++....+ .+......+.
T Consensus 365 ~~~i~L~~a~f~e~~~n~~~A~~~lq~i~~e~-pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~~~~i~~~l~ 443 (577)
T KOG1258|consen 365 TPIIHLLEARFEESNGNFDDAKVILQRIESEY-PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGKENNGILEKLY 443 (577)
T ss_pred CcHHHHHHHHHHHhhccHHHHHHHHHHHHhhC-CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcccccCcchhHHHH
Confidence 22222222222345567777777777776654 333333333344455666666665 33333221 1222222222
Q ss_pred HH-----HHhCCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHh
Q 007808 369 SG-----LAMHGRGAGALSLFHEMKNAGEMPDGITFIGILCACT 407 (589)
Q Consensus 369 ~~-----~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~ 407 (589)
-- +.-.++.+.|..++.++.+. ++++...|..++..+.
T Consensus 444 ~~~~r~~~~i~~d~~~a~~~l~~~~~~-~~~~k~~~~~~~~~~~ 486 (577)
T KOG1258|consen 444 VKFARLRYKIREDADLARIILLEANDI-LPDCKVLYLELIRFEL 486 (577)
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHhhhc-CCccHHHHHHHHHHHH
Confidence 21 22245666677777666664 3445555555555443
No 266
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=95.36 E-value=0.93 Score=45.02 Aligned_cols=76 Identities=9% Similarity=0.037 Sum_probs=37.1
Q ss_pred HHHHHHHHHhcCCChHHHHHHhcccCCCChhhHHHHHHHHHhcCCHHHHHHHHhhCCCCCchhHHHHHHHHHhCCChHHH
Q 007808 199 LWNTIVSGYIDVRNMIEARKLFDQMPKKDVISWNTMLSGYANNGDVEECKRLFEEMPERNVFSWNGLIGGYANNGLFFEV 278 (589)
Q Consensus 199 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 278 (589)
-.+.++..+.+.|..+.|.++... . ..-.+...+.|+++.|.++.++.. +...|..|.....++|+++-|
T Consensus 297 ~~~~i~~fL~~~G~~e~AL~~~~D-----~---~~rFeLAl~lg~L~~A~~~a~~~~--~~~~W~~Lg~~AL~~g~~~lA 366 (443)
T PF04053_consen 297 QGQSIARFLEKKGYPELALQFVTD-----P---DHRFELALQLGNLDIALEIAKELD--DPEKWKQLGDEALRQGNIELA 366 (443)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHSS------H---HHHHHHHHHCT-HHHHHHHCCCCS--THHHHHHHHHHHHHTTBHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHhhcCC-----h---HHHhHHHHhcCCHHHHHHHHHhcC--cHHHHHHHHHHHHHcCCHHHH
Confidence 344555555555555555555432 1 122334445555555555554443 334555555555555555555
Q ss_pred HHHHHH
Q 007808 279 LDAFKR 284 (589)
Q Consensus 279 ~~~~~~ 284 (589)
.+.|.+
T Consensus 367 e~c~~k 372 (443)
T PF04053_consen 367 EECYQK 372 (443)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 555544
No 267
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=95.32 E-value=0.31 Score=39.22 Aligned_cols=103 Identities=11% Similarity=0.079 Sum_probs=66.5
Q ss_pred hcCCCHHHHHHHHHHHHccCCCCCcchHHHHHHHhhcCChHHHHHHHHHhhhCCCccCCccceeeeCCeeeeeccccCCC
Q 007808 475 RVYKNVELAELALERLTELEPKNPANFVMLSNIYGDLGRWKDVARIKVAMRDTGFKKLPGCSSIEVNEVVMLGCLSRELD 554 (589)
Q Consensus 475 ~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 554 (589)
...++.+++..++..+.-+.|+.++.-..-++++...|+|++|++++.++.+.+.... ..+.+...|+..- +
T Consensus 21 L~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p-------~~kAL~A~CL~al-~ 92 (153)
T TIGR02561 21 LRSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPP-------YGKALLALCLNAK-G 92 (153)
T ss_pred HhcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCch-------HHHHHHHHHHHhc-C
Confidence 3588999999999999999999999999999999999999999999998864442210 0011111122221 2
Q ss_pred chHHHHHHHHHHHHcccCCCCcchHhhhhhcc
Q 007808 555 RKSIVRAEANMIKLLPQNNHPLTFIVVIFSTF 586 (589)
Q Consensus 555 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 586 (589)
||+=...-..+ .+.|..++++..+..|...|
T Consensus 93 Dp~Wr~~A~~~-le~~~~~~a~~Lv~al~g~~ 123 (153)
T TIGR02561 93 DAEWHVHADEV-LARDADADAVALVRALLGAQ 123 (153)
T ss_pred ChHHHHHHHHH-HHhCCCHhHHHHHHHHhccc
Confidence 23222222222 25556667777777777665
No 268
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=95.32 E-value=0.048 Score=35.31 Aligned_cols=50 Identities=14% Similarity=0.102 Sum_probs=41.4
Q ss_pred chHHHHHHHhhcCChHHHHHHHHHhhhCCCccCCccceeeeCCeeeeeccccCCCchHHHHHHHHHHHHcccCC
Q 007808 500 NFVMLSNIYGDLGRWKDVARIKVAMRDTGFKKLPGCSSIEVNEVVMLGCLSRELDRKSIVRAEANMIKLLPQNN 573 (589)
Q Consensus 500 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~ 573 (589)
.+..++-.+.+.|++++|.++.+.+. +.+|+|..+..+...+..++.+.+
T Consensus 3 ~lY~lAig~ykl~~Y~~A~~~~~~lL------------------------~~eP~N~Qa~~L~~~i~~~i~kdg 52 (53)
T PF14853_consen 3 CLYYLAIGHYKLGEYEKARRYCDALL------------------------EIEPDNRQAQSLKELIEDKIQKDG 52 (53)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHH------------------------HHTTS-HHHHHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHhhhHHHHHHHHHHHH------------------------hhCCCcHHHHHHHHHHHHHHhccC
Confidence 46678889999999999999999996 899999999999988887766543
No 269
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=95.32 E-value=0.017 Score=33.54 Aligned_cols=27 Identities=15% Similarity=0.253 Sum_probs=23.8
Q ss_pred cchHHHHHHHhhcCChHHHHHHHHHhh
Q 007808 499 ANFVMLSNIYGDLGRWKDVARIKVAMR 525 (589)
Q Consensus 499 ~~~~~l~~~~~~~g~~~~A~~~~~~~~ 525 (589)
..+..++.++...|++++|++.+++..
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al 28 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKAL 28 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 467899999999999999999999985
No 270
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=95.26 E-value=0.94 Score=42.17 Aligned_cols=123 Identities=11% Similarity=0.071 Sum_probs=65.0
Q ss_pred HHHHHHhcCChHHHHHHHhhCC-------CC--CcchHHHHHHHHHhCCChHHHHHHHHHHHH--CCCCCC--Hh-----
Q 007808 336 LIDMYAKCGIIENAVDVFNSMD-------TK--DLITWNTIISGLAMHGRGAGALSLFHEMKN--AGEMPD--GI----- 397 (589)
Q Consensus 336 l~~~~~~~g~~~~A~~~~~~~~-------~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~--~~~~p~--~~----- 397 (589)
+..++...+.++++++.|+... .+ ...++-.|.+.|.+..++++|+-+..+..+ +.+..+ ..
T Consensus 128 ~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~ 207 (518)
T KOG1941|consen 128 MGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAM 207 (518)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHH
Confidence 4444445555555555555432 11 224566666667777777776666555443 111111 11
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHhHHh---cCCCCC-hHHHHHHHHHHHhcCCHHHHHHHHhhC
Q 007808 398 TFIGILCACTHMGLVEEGLSYFQSMAMD---YSIVPQ-IEHYGCMVDLLARAGRLAEAVDFVKRM 458 (589)
Q Consensus 398 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~ 458 (589)
....+.-++...|.+..|.+..++..+- .|..+- ......+.+.|-..|+.+.|..-|+++
T Consensus 208 ~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~A 272 (518)
T KOG1941|consen 208 SLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQA 272 (518)
T ss_pred HHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHH
Confidence 1223444566667776666666655331 222221 334456677787888877777766654
No 271
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=95.20 E-value=1.8 Score=43.06 Aligned_cols=129 Identities=16% Similarity=0.123 Sum_probs=79.2
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHhCCCCChhHHHHHHHHHhcCCChHHHHHHhcccCCCChhhHHHHHHHHHhcCCHHHHH
Q 007808 169 WTSMINGYISCGDIVSARCLFELAPERDVILWNTIVSGYIDVRNMIEARKLFDQMPKKDVISWNTMLSGYANNGDVEECK 248 (589)
Q Consensus 169 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 248 (589)
.+.++.-+-+.|..+.|+.+.+ |+.+ -.....+.|+++.|.++.++.. +...|..|.+...+.|+++-|+
T Consensus 298 ~~~i~~fL~~~G~~e~AL~~~~-----D~~~---rFeLAl~lg~L~~A~~~a~~~~--~~~~W~~Lg~~AL~~g~~~lAe 367 (443)
T PF04053_consen 298 GQSIARFLEKKGYPELALQFVT-----DPDH---RFELALQLGNLDIALEIAKELD--DPEKWKQLGDEALRQGNIELAE 367 (443)
T ss_dssp HHHHHHHHHHTT-HHHHHHHSS------HHH---HHHHHHHCT-HHHHHHHCCCCS--THHHHHHHHHHHHHTTBHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHhhcC-----ChHH---HhHHHHhcCCHHHHHHHHHhcC--cHHHHHHHHHHHHHcCCHHHHH
Confidence 3444444445555555555433 3322 2233456788888888777653 5668888888888888888888
Q ss_pred HHHhhCCCCCchhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHhcCChhHHHHHHH
Q 007808 249 RLFEEMPERNVFSWNGLIGGYANNGLFFEVLDAFKRMLTEGRVFPNDATIVTVLSACARLGALDFSKWVHV 319 (589)
Q Consensus 249 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~ 319 (589)
+.|.+... +..|+-.|.-.|+.+.-.++.+.....| -++....++...|+.++..+++.
T Consensus 368 ~c~~k~~d-----~~~L~lLy~~~g~~~~L~kl~~~a~~~~-------~~n~af~~~~~lgd~~~cv~lL~ 426 (443)
T PF04053_consen 368 ECYQKAKD-----FSGLLLLYSSTGDREKLSKLAKIAEERG-------DINIAFQAALLLGDVEECVDLLI 426 (443)
T ss_dssp HHHHHCT------HHHHHHHHHHCT-HHHHHHHHHHHHHTT--------HHHHHHHHHHHT-HHHHHHHHH
T ss_pred HHHHhhcC-----ccccHHHHHHhCCHHHHHHHHHHHHHcc-------CHHHHHHHHHHcCCHHHHHHHHH
Confidence 88888765 6667777888888877777777777666 13344445555566665555443
No 272
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=95.13 E-value=1.5 Score=35.84 Aligned_cols=41 Identities=22% Similarity=0.120 Sum_probs=19.8
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHcCCCCChhHHHHHHHHHHh
Q 007808 301 VLSACARLGALDFSKWVHVYAEYNGYQGNVCVGNALIDMYAK 342 (589)
Q Consensus 301 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 342 (589)
++..+...+.......+++.+...+ +.+...++.++..|++
T Consensus 13 vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~ 53 (140)
T smart00299 13 VVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAK 53 (140)
T ss_pred HHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHH
Confidence 3344444444555555555555444 2344455555555544
No 273
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=95.09 E-value=2.2 Score=41.39 Aligned_cols=150 Identities=13% Similarity=-0.009 Sum_probs=78.2
Q ss_pred CcchHHHHHHHHHhCCChHHHHHHHHHHHHCCCCC---CHhHHHHHHHHHhccCcHHHHHHHHHHhHHh-cCCCCChHHH
Q 007808 360 DLITWNTIISGLAMHGRGAGALSLFHEMKNAGEMP---DGITFIGILCACTHMGLVEEGLSYFQSMAMD-YSIVPQIEHY 435 (589)
Q Consensus 360 ~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~ 435 (589)
...+|..++..+.+.|+++.|...+.++...+..+ .+.....-+...-..|+..+|...++..... .....+....
T Consensus 145 ~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~~~ 224 (352)
T PF02259_consen 145 LAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSISN 224 (352)
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccccccH
Confidence 34567777778888888888888888777643211 2233333445556667778888877776541 1111011111
Q ss_pred HHHHHHHHhcCCHHHHHHH-HhhCCCCCCHHHHHHHHHHHhc------CCCHHHHHHHHHHHHccCCCCCcchHHHHHHH
Q 007808 436 GCMVDLLARAGRLAEAVDF-VKRMPIEADAVIWANLLGSCRV------YKNVELAELALERLTELEPKNPANFVMLSNIY 508 (589)
Q Consensus 436 ~~l~~~~~~~g~~~~A~~~-~~~~~~~p~~~~~~~l~~~~~~------~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 508 (589)
..+...+.. ..+..... ........-...+..+...+.. .+..+++...|+++.++.|.....+..++..+
T Consensus 225 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~~ 302 (352)
T PF02259_consen 225 AELKSGLLE--SLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWALFN 302 (352)
T ss_pred HHHhhcccc--ccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHHHH
Confidence 111111000 00000000 0000000011222233333333 37889999999999999998888888888776
Q ss_pred hhc
Q 007808 509 GDL 511 (589)
Q Consensus 509 ~~~ 511 (589)
.+.
T Consensus 303 ~~~ 305 (352)
T PF02259_consen 303 DKL 305 (352)
T ss_pred HHH
Confidence 553
No 274
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=95.06 E-value=0.62 Score=37.47 Aligned_cols=20 Identities=20% Similarity=0.137 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHccCCCCCc
Q 007808 480 VELAELALERLTELEPKNPA 499 (589)
Q Consensus 480 ~~~A~~~~~~~~~~~p~~~~ 499 (589)
...|...|+++++.-|++..
T Consensus 115 ~~~A~~~f~~lv~~yP~S~y 134 (142)
T PF13512_consen 115 ARQAFRDFEQLVRRYPNSEY 134 (142)
T ss_pred HHHHHHHHHHHHHHCcCChh
Confidence 56788888888888887553
No 275
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=95.05 E-value=1.7 Score=43.95 Aligned_cols=158 Identities=10% Similarity=-0.071 Sum_probs=88.1
Q ss_pred HHHHHHHHhCCChHHHHHHHHHHHHcCCCCCcHH-----HHHHHHHHHHh----cCChhHHHHHHHHHHHcCCCCChhHH
Q 007808 263 NGLIGGYANNGLFFEVLDAFKRMLTEGRVFPNDA-----TIVTVLSACAR----LGALDFSKWVHVYAEYNGYQGNVCVG 333 (589)
Q Consensus 263 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~-----~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~ 333 (589)
..++....=.|+-+.+++.+.+..+.+.+.-... .|..++..++. ..+.+.+.+++..+.+.= |.+....
T Consensus 192 ~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~y-P~s~lfl 270 (468)
T PF10300_consen 192 LKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKRY-PNSALFL 270 (468)
T ss_pred HHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHhC-CCcHHHH
Confidence 3445555566777777777777666442322221 23333333222 345666777777776652 3233222
Q ss_pred HHHHHHHHhcCChHHHHHHHhhCCCC-------CcchHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHhHHHHHHHH-
Q 007808 334 NALIDMYAKCGIIENAVDVFNSMDTK-------DLITWNTIISGLAMHGRGAGALSLFHEMKNAGEMPDGITFIGILCA- 405 (589)
Q Consensus 334 ~~l~~~~~~~g~~~~A~~~~~~~~~~-------~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~- 405 (589)
-.-.+.+...|++++|++.|+..... ....+--++-.+.-..++++|.+.|.++.+.. .-+..+|..+..+
T Consensus 271 ~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s-~WSka~Y~Y~~a~c 349 (468)
T PF10300_consen 271 FFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKES-KWSKAFYAYLAAAC 349 (468)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhcc-ccHHHHHHHHHHHH
Confidence 33445566677888888888765421 12233445555666778888888888877742 2344444444433
Q ss_pred HhccCcH-------HHHHHHHHHh
Q 007808 406 CTHMGLV-------EEGLSYFQSM 422 (589)
Q Consensus 406 ~~~~g~~-------~~A~~~~~~~ 422 (589)
+...|+. ++|.++|.++
T Consensus 350 ~~~l~~~~~~~~~~~~a~~l~~~v 373 (468)
T PF10300_consen 350 LLMLGREEEAKEHKKEAEELFRKV 373 (468)
T ss_pred HHhhccchhhhhhHHHHHHHHHHH
Confidence 3455666 6666666665
No 276
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=95.03 E-value=6.7 Score=42.87 Aligned_cols=105 Identities=10% Similarity=0.085 Sum_probs=55.4
Q ss_pred HHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCCHHH--HHHHHHHHhcCCCH
Q 007808 403 LCACTHMGLVEEGLSYFQSMAMDYSIVPQIEHYGCMVDLLARAGRLAEAVDFVKRMPIEADAVI--WANLLGSCRVYKNV 480 (589)
Q Consensus 403 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~--~~~l~~~~~~~g~~ 480 (589)
..-+...+.+++|.-.|+..-+ ..--+.+|..+|+|.+|+.+..++....+... -..|..-+..++++
T Consensus 946 a~hL~~~~~~~~Aal~Ye~~Gk----------lekAl~a~~~~~dWr~~l~~a~ql~~~~de~~~~a~~L~s~L~e~~kh 1015 (1265)
T KOG1920|consen 946 ADHLREELMSDEAALMYERCGK----------LEKALKAYKECGDWREALSLAAQLSEGKDELVILAEELVSRLVEQRKH 1015 (1265)
T ss_pred HHHHHHhccccHHHHHHHHhcc----------HHHHHHHHHHhccHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHcccc
Confidence 3334455566666655554411 12234566667777777776666643333222 14455666667777
Q ss_pred HHHHHHHHHHHccCCCCCcchHHHHHHHhhcCChHHHHHHHHHh
Q 007808 481 ELAELALERLTELEPKNPANFVMLSNIYGDLGRWKDVARIKVAM 524 (589)
Q Consensus 481 ~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 524 (589)
-+|-++..+... + .......|+++..|++|+++....
T Consensus 1016 ~eAa~il~e~~s-d------~~~av~ll~ka~~~~eAlrva~~~ 1052 (1265)
T KOG1920|consen 1016 YEAAKILLEYLS-D------PEEAVALLCKAKEWEEALRVASKA 1052 (1265)
T ss_pred hhHHHHHHHHhc-C------HHHHHHHHhhHhHHHHHHHHHHhc
Confidence 666666665543 1 123344555666666666654433
No 277
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=95.00 E-value=0.12 Score=45.99 Aligned_cols=112 Identities=10% Similarity=0.050 Sum_probs=84.7
Q ss_pred hHHHHHhhcCC--CCCcccHHHHHHHHHc-----CCChhHHHHHHHHhhhCCCCCCcccHHHHHHHHhccC---------
Q 007808 51 TYARKMFDKIT--DQNVVSWNAMFNGYAQ-----NEFHRTVVVLFTQMKKLDAMPNCFTFPIVLKSCVKIN--------- 114 (589)
Q Consensus 51 ~~A~~~~~~~~--~~~~~~~~~ll~~~~~-----~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~--------- 114 (589)
--....|+... ++|-.+|.+.+..|.. .+.++-....++.|.+.|+.-|..+|+.|++.+-+..
T Consensus 51 v~~e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~ 130 (406)
T KOG3941|consen 51 VHVEKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQK 130 (406)
T ss_pred cchhhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHH
Confidence 33455666655 4677788888887754 3566666777899999999999999999999875532
Q ss_pred -------ChHHHHHHHHHHHHhCCCCchHHHhHHHHHHHcCCC-hHHHHHHHccCC
Q 007808 115 -------ALREGEELHCLVLKNGFRANIFVGTALIELYSTGKA-IEAAYKVFGEMD 162 (589)
Q Consensus 115 -------~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~-~~~A~~~~~~~~ 162 (589)
.-+-++.++++|..+|+.||..+-..|++++.+.+. ..+..++.-.|+
T Consensus 131 ~F~HYP~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~p~~K~~Rm~yWmP 186 (406)
T KOG3941|consen 131 VFLHYPQQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNFPTKKVKRMLYWMP 186 (406)
T ss_pred HHhhCchhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhccccccHHHHHHHHHhhh
Confidence 223478999999999999999999999999998875 345555555554
No 278
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=94.99 E-value=3.8 Score=39.78 Aligned_cols=62 Identities=15% Similarity=0.110 Sum_probs=32.1
Q ss_pred HhHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCC---ChHHHHHHHHHHHhcCCHHHHHHHHhhC
Q 007808 396 GITFIGILCACTHMGLVEEGLSYFQSMAMDYSIVP---QIEHYGCMVDLLARAGRLAEAVDFVKRM 458 (589)
Q Consensus 396 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 458 (589)
..++..++..+.+.|.++.|...+..+... ...+ .+...-.-++.+...|+..+|+..++..
T Consensus 146 ~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~-~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~ 210 (352)
T PF02259_consen 146 AETWLKFAKLARKAGNFQLALSALNRLFQL-NPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLREL 210 (352)
T ss_pred HHHHHHHHHHHHHCCCcHHHHHHHHHHhcc-CCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 345556666666666666666666655321 1000 2222333345555666666666655544
No 279
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=94.89 E-value=0.27 Score=38.57 Aligned_cols=89 Identities=13% Similarity=0.103 Sum_probs=57.3
Q ss_pred CCCHHHHHHHHHHHhcCC---CHHHHHHHHHHHHc-cCCC-CCcchHHHHHHHhhcCChHHHHHHHHHhhhCCCccCCcc
Q 007808 461 EADAVIWANLLGSCRVYK---NVELAELALERLTE-LEPK-NPANFVMLSNIYGDLGRWKDVARIKVAMRDTGFKKLPGC 535 (589)
Q Consensus 461 ~p~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~-~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 535 (589)
.++..+--.+.+++.++. +..+.+.+++...+ -.|. ..+..+.|+-.+.|.|+|+.++++.+.+.
T Consensus 29 ~~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll---------- 98 (149)
T KOG3364|consen 29 DVSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALL---------- 98 (149)
T ss_pred cchHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHH----------
Confidence 344444444556665544 35566667777775 3332 34566667777778888888888777764
Q ss_pred ceeeeCCeeeeeccccCCCchHHHHHHHHHHHHcccCC
Q 007808 536 SSIEVNEVVMLGCLSRELDRKSIVRAEANMIKLLPQNN 573 (589)
Q Consensus 536 ~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~ 573 (589)
+.+|+|+.+..+-..++.++.+.+
T Consensus 99 --------------~~e~~n~Qa~~Lk~~ied~itkeg 122 (149)
T KOG3364|consen 99 --------------ETEPNNRQALELKETIEDKITKEG 122 (149)
T ss_pred --------------hhCCCcHHHHHHHHHHHHHHhhcc
Confidence 677777777777777777666653
No 280
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=94.81 E-value=3.6 Score=40.49 Aligned_cols=17 Identities=29% Similarity=0.282 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHccCCCC
Q 007808 481 ELAELALERLTELEPKN 497 (589)
Q Consensus 481 ~~A~~~~~~~~~~~p~~ 497 (589)
..|.+.+.++.+.+|.-
T Consensus 363 ~~aveAi~RAvefNPHV 379 (539)
T PF04184_consen 363 MNAVEAIHRAVEFNPHV 379 (539)
T ss_pred HHHHHHHHHHHHhCCCC
Confidence 34678888888888763
No 281
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=94.80 E-value=0.072 Score=41.33 Aligned_cols=54 Identities=7% Similarity=-0.098 Sum_probs=51.0
Q ss_pred HHHhcCCCHHHHHHHHHHHHccCCCCCcchHHHHHHHhhcCChHHHHHHHHHhh
Q 007808 472 GSCRVYKNVELAELALERLTELEPKNPANFVMLSNIYGDLGRWKDVARIKVAMR 525 (589)
Q Consensus 472 ~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 525 (589)
.++...|+.+.|++.|.+++.+-|.++.+|++-+..+.-.|+.++|+.-+++..
T Consensus 51 valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~Al 104 (175)
T KOG4555|consen 51 IALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKAL 104 (175)
T ss_pred HHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHH
Confidence 567899999999999999999999999999999999999999999999988885
No 282
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=94.76 E-value=0.026 Score=32.71 Aligned_cols=27 Identities=19% Similarity=0.276 Sum_probs=23.9
Q ss_pred cchHHHHHHHhhcCChHHHHHHHHHhh
Q 007808 499 ANFVMLSNIYGDLGRWKDVARIKVAMR 525 (589)
Q Consensus 499 ~~~~~l~~~~~~~g~~~~A~~~~~~~~ 525 (589)
.+|..++.+|...|++++|+..+++..
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al 28 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRAL 28 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHH
Confidence 468899999999999999999999985
No 283
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=94.72 E-value=1.9 Score=35.14 Aligned_cols=45 Identities=9% Similarity=0.098 Sum_probs=25.0
Q ss_pred HHHHHHHHHcCCChhHHHHHHHHhhhCCCCCCcccHHHHHHHHhcc
Q 007808 68 WNAMFNGYAQNEFHRTVVVLFTQMKKLDAMPNCFTFPIVLKSCVKI 113 (589)
Q Consensus 68 ~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~ 113 (589)
-..++..+...+.+......++.+...+ ..+...++.++..+++.
T Consensus 10 ~~~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~ 54 (140)
T smart00299 10 VSEVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKY 54 (140)
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHH
Confidence 3445555555556666666666655554 24455555566555543
No 284
>PRK09687 putative lyase; Provisional
Probab=94.68 E-value=3.7 Score=38.18 Aligned_cols=72 Identities=7% Similarity=-0.145 Sum_probs=32.1
Q ss_pred CChHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHccCCCCCcchHHHHH
Q 007808 430 PQIEHYGCMVDLLARAGRLAEAVDFVKRMPIEADAVIWANLLGSCRVYKNVELAELALERLTELEPKNPANFVMLSN 506 (589)
Q Consensus 430 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~ 506 (589)
++.......+.++.+.|.. +|+..+-+.-..++. ....+.++...|+. +|...+.++.+.+|+ +.+.....+
T Consensus 204 ~~~~VR~~A~~aLg~~~~~-~av~~Li~~L~~~~~--~~~a~~ALg~ig~~-~a~p~L~~l~~~~~d-~~v~~~a~~ 275 (280)
T PRK09687 204 KNEEIRIEAIIGLALRKDK-RVLSVLIKELKKGTV--GDLIIEAAGELGDK-TLLPVLDTLLYKFDD-NEIITKAID 275 (280)
T ss_pred CChHHHHHHHHHHHccCCh-hHHHHHHHHHcCCch--HHHHHHHHHhcCCH-hHHHHHHHHHhhCCC-hhHHHHHHH
Confidence 3444444455555555552 333333333112221 22344555555553 466666666655553 444333333
No 285
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=94.51 E-value=0.055 Score=31.87 Aligned_cols=26 Identities=15% Similarity=0.208 Sum_probs=21.7
Q ss_pred chHHHHHHHhhcCChHHHHHHHHHhh
Q 007808 500 NFVMLSNIYGDLGRWKDVARIKVAMR 525 (589)
Q Consensus 500 ~~~~l~~~~~~~g~~~~A~~~~~~~~ 525 (589)
++..|+.+|.+.|+|++|++++++..
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 36789999999999999999999854
No 286
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=94.47 E-value=0.063 Score=31.03 Aligned_cols=31 Identities=26% Similarity=0.193 Sum_probs=23.3
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHccCCC
Q 007808 466 IWANLLGSCRVYKNVELAELALERLTELEPK 496 (589)
Q Consensus 466 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 496 (589)
+|..+...+...|++++|...|+++++++|+
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~ 33 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALELNPD 33 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 4556667777888888888888888887774
No 287
>PRK09687 putative lyase; Provisional
Probab=94.45 E-value=4.2 Score=37.81 Aligned_cols=218 Identities=12% Similarity=0.002 Sum_probs=90.3
Q ss_pred CCCcccHHHHHHHHHcCCChhHHHHHHHHhhhCCCCCCcccHHHHHHHHhccCCh----HHHHHHHHHHHHhCCCCchHH
Q 007808 62 DQNVVSWNAMFNGYAQNEFHRTVVVLFTQMKKLDAMPNCFTFPIVLKSCVKINAL----REGEELHCLVLKNGFRANIFV 137 (589)
Q Consensus 62 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~----~~a~~~~~~~~~~~~~~~~~~ 137 (589)
.++.......+.++...|.. .+...+..+.+. +|...=...+.+++..|+. .++...+..+... +++..+
T Consensus 34 d~d~~vR~~A~~aL~~~~~~-~~~~~l~~ll~~---~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~--D~d~~V 107 (280)
T PRK09687 34 DHNSLKRISSIRVLQLRGGQ-DVFRLAIELCSS---KNPIERDIGADILSQLGMAKRCQDNVFNILNNLALE--DKSACV 107 (280)
T ss_pred CCCHHHHHHHHHHHHhcCcc-hHHHHHHHHHhC---CCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhc--CCCHHH
Confidence 34555555555566555542 233333333322 2333333344445555542 2344444444332 344444
Q ss_pred HhHHHHHHHcCCCh-----HHHHHHHcc-CCCCCeehHHHHHHHHHhCCCHHHHHHHHHhCCCCChhHHHHHHHHHhcCC
Q 007808 138 GTALIELYSTGKAI-----EAAYKVFGE-MDERNVVVWTSMINGYISCGDIVSARCLFELAPERDVILWNTIVSGYIDVR 211 (589)
Q Consensus 138 ~~~li~~~~~~g~~-----~~A~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g 211 (589)
....+.++...+.- ..+...+.. +..++..+-...+.++++.|+.+..-.+...+.++|...-...+.++.+.+
T Consensus 108 R~~A~~aLG~~~~~~~~~~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~~~~~ai~~L~~~L~d~~~~VR~~A~~aLg~~~ 187 (280)
T PRK09687 108 RASAINATGHRCKKNPLYSPKIVEQSQITAFDKSTNVRFAVAFALSVINDEAAIPLLINLLKDPNGDVRNWAAFALNSNK 187 (280)
T ss_pred HHHHHHHHhcccccccccchHHHHHHHHHhhCCCHHHHHHHHHHHhccCCHHHHHHHHHHhcCCCHHHHHHHHHHHhcCC
Confidence 44444444443211 122222222 222344444444555555554333333333333344444444444444332
Q ss_pred -ChHHHHHHhccc-CCCChhhHHHHHHHHHhcCCHHHHHHHHhhCCCCCchhHHHHHHHHHhCCChHHHHHHHHHHHHc
Q 007808 212 -NMIEARKLFDQM-PKKDVISWNTMLSGYANNGDVEECKRLFEEMPERNVFSWNGLIGGYANNGLFFEVLDAFKRMLTE 288 (589)
Q Consensus 212 -~~~~a~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 288 (589)
+...+...+..+ ..++..+....+.++.+.++......+.+.+..++ .....+.++...|.. +|+..+..+.+.
T Consensus 188 ~~~~~~~~~L~~~L~D~~~~VR~~A~~aLg~~~~~~av~~Li~~L~~~~--~~~~a~~ALg~ig~~-~a~p~L~~l~~~ 263 (280)
T PRK09687 188 YDNPDIREAFVAMLQDKNEEIRIEAIIGLALRKDKRVLSVLIKELKKGT--VGDLIIEAAGELGDK-TLLPVLDTLLYK 263 (280)
T ss_pred CCCHHHHHHHHHHhcCCChHHHHHHHHHHHccCChhHHHHHHHHHcCCc--hHHHHHHHHHhcCCH-hHHHHHHHHHhh
Confidence 122233222222 23555555555555555555332223333332222 122344555555553 455555555543
No 288
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=94.43 E-value=7.2 Score=40.48 Aligned_cols=112 Identities=12% Similarity=0.014 Sum_probs=50.6
Q ss_pred hcCChhHHHHHHHHHHH-------cCCCCChhHHHHHHHHHHhcC-----ChHHHHHHHhhCCC-CCcchHHHHHHHHHh
Q 007808 307 RLGALDFSKWVHVYAEY-------NGYQGNVCVGNALIDMYAKCG-----IIENAVDVFNSMDT-KDLITWNTIISGLAM 373 (589)
Q Consensus 307 ~~~~~~~a~~~~~~~~~-------~~~~~~~~~~~~l~~~~~~~g-----~~~~A~~~~~~~~~-~~~~~~~~l~~~~~~ 373 (589)
...|++.|..+++.+.+ .+ .......+..+|.+.. +.+.|..++..... .++.....+...+..
T Consensus 261 ~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~g~~~a~~~lg~~~~~ 337 (552)
T KOG1550|consen 261 VTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQGLGVEKIDYEKALKLYTKAAELGNPDAQYLLGVLYET 337 (552)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcCCCCccccHHHHHHHHHHHHhcCCchHHHHHHHHHHc
Confidence 44455555555555544 33 2223344455554432 34445555554432 222333333333332
Q ss_pred C---CChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHh----ccCcHHHHHHHHHHhHH
Q 007808 374 H---GRGAGALSLFHEMKNAGEMPDGITFIGILCACT----HMGLVEEGLSYFQSMAM 424 (589)
Q Consensus 374 ~---~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~----~~g~~~~A~~~~~~~~~ 424 (589)
. .+...|.++|......|..+ . +..+..+|. ...+...|..++++...
T Consensus 338 g~~~~d~~~A~~yy~~Aa~~G~~~-A--~~~la~~y~~G~gv~r~~~~A~~~~k~aA~ 392 (552)
T KOG1550|consen 338 GTKERDYRRAFEYYSLAAKAGHIL-A--IYRLALCYELGLGVERNLELAFAYYKKAAE 392 (552)
T ss_pred CCccccHHHHHHHHHHHHHcCChH-H--HHHHHHHHHhCCCcCCCHHHHHHHHHHHHH
Confidence 2 24556666666666665322 1 111222111 22356666666666644
No 289
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.37 E-value=2.7 Score=37.10 Aligned_cols=92 Identities=7% Similarity=-0.090 Sum_probs=55.7
Q ss_pred HHHHhcCCCHHHHHHHHHHHHc----cC--CCCCcchHHHHHHHhhcCChHHHHHHHHHhhhCCCccCCccceeeeCCee
Q 007808 471 LGSCRVYKNVELAELALERLTE----LE--PKNPANFVMLSNIYGDLGRWKDVARIKVAMRDTGFKKLPGCSSIEVNEVV 544 (589)
Q Consensus 471 ~~~~~~~g~~~~A~~~~~~~~~----~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 544 (589)
...+.+...+.+|-..+.+-.. .+ |.--..+...+-+|.-..++..|.+.++.--..+-
T Consensus 157 sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~--------------- 221 (308)
T KOG1585|consen 157 SRVLVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPA--------------- 221 (308)
T ss_pred hhHhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCcc---------------
Confidence 3556666777777666655433 22 33233466777777888899999999876432221
Q ss_pred eeeccccCCCchHHHHHHHHHHHHcccCCCCcchHhhhhhcc
Q 007808 545 MLGCLSRELDRKSIVRAEANMIKLLPQNNHPLTFIVVIFSTF 586 (589)
Q Consensus 545 ~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 586 (589)
-..|++...++.|-..| +.++...+..++++.|
T Consensus 222 -----f~~sed~r~lenLL~ay----d~gD~E~~~kvl~sp~ 254 (308)
T KOG1585|consen 222 -----FLKSEDSRSLENLLTAY----DEGDIEEIKKVLSSPT 254 (308)
T ss_pred -----ccChHHHHHHHHHHHHh----ccCCHHHHHHHHcChH
Confidence 25677777777777777 2233445555555543
No 290
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=94.34 E-value=0.038 Score=45.87 Aligned_cols=75 Identities=12% Similarity=0.089 Sum_probs=55.4
Q ss_pred HHHHHHHHHHHHccCCCCCcchHHHHHHHhhcCCh---HHHHHHHHHhhhCCCccCCccceeeeCCeeeeeccccCCCch
Q 007808 480 VELAELALERLTELEPKNPANFVMLSNIYGDLGRW---KDVARIKVAMRDTGFKKLPGCSSIEVNEVVMLGCLSRELDRK 556 (589)
Q Consensus 480 ~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~---~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 556 (589)
++.|.+.++.....+|.|+..+...+.++....++ .++.+++++.. . -.+.|+.++|+..
T Consensus 7 FE~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAi----s-------------K~eeAL~I~P~~h 69 (186)
T PF06552_consen 7 FEHARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAI----S-------------KFEEALKINPNKH 69 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHH----H-------------HHHHHHHH-TT-H
T ss_pred HHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHH----H-------------HHHHHHhcCCchH
Confidence 56788888888999999999999999998776554 45666666652 0 0122679999999
Q ss_pred HHHHHHHHHHHHccc
Q 007808 557 SIVRAEANMIKLLPQ 571 (589)
Q Consensus 557 ~~~~~l~~~~~~~~~ 571 (589)
.++-.+|++|...+.
T Consensus 70 dAlw~lGnA~ts~A~ 84 (186)
T PF06552_consen 70 DALWCLGNAYTSLAF 84 (186)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHh
Confidence 999999999998887
No 291
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=94.24 E-value=0.09 Score=43.71 Aligned_cols=70 Identities=11% Similarity=0.103 Sum_probs=44.9
Q ss_pred CHHHHHHHHHHHHccCCCCCcchHHHHHHHhhcCC----hHHHHHHHHHhhhCCCccCCccceeeeCCeeeeeccccCCC
Q 007808 479 NVELAELALERLTELEPKNPANFVMLSNIYGDLGR----WKDVARIKVAMRDTGFKKLPGCSSIEVNEVVMLGCLSRELD 554 (589)
Q Consensus 479 ~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~----~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 554 (589)
-+++|+.-|++++.++|+...++.+++.+|...+. ..+|..+|++..+ --+.|++.+|+
T Consensus 50 miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~-----------------~FqkAv~~~P~ 112 (186)
T PF06552_consen 50 MIEDAISKFEEALKINPNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKATE-----------------YFQKAVDEDPN 112 (186)
T ss_dssp HHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHH-----------------HHHHHHHH-TT
T ss_pred HHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHH-----------------HHHHHHhcCCC
Confidence 35678888888899999999999999999887653 4455555555420 00113478888
Q ss_pred chHHHHHHHHH
Q 007808 555 RKSIVRAEANM 565 (589)
Q Consensus 555 ~~~~~~~l~~~ 565 (589)
|..+...|.-.
T Consensus 113 ne~Y~ksLe~~ 123 (186)
T PF06552_consen 113 NELYRKSLEMA 123 (186)
T ss_dssp -HHHHHHHHHH
T ss_pred cHHHHHHHHHH
Confidence 88877776543
No 292
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=94.09 E-value=0.64 Score=39.35 Aligned_cols=104 Identities=12% Similarity=0.057 Sum_probs=67.5
Q ss_pred HhccCcHHHHHHHHHHhHHhcCCCCC---hHHHHHHHHHHHhcCCHHHHHHHHhhC-CCCCCH-HHHHHHHHHHhcCCCH
Q 007808 406 CTHMGLVEEGLSYFQSMAMDYSIVPQ---IEHYGCMVDLLARAGRLAEAVDFVKRM-PIEADA-VIWANLLGSCRVYKNV 480 (589)
Q Consensus 406 ~~~~g~~~~A~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~-~~~~~l~~~~~~~g~~ 480 (589)
+...|++++|..-|..++....-.+. ...|..-..++.+.+.++.|++--.+. .+.|.. ..+..-..+|.+...+
T Consensus 105 ~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~ek~ 184 (271)
T KOG4234|consen 105 LFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEKMEKY 184 (271)
T ss_pred hhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhhhhH
Confidence 44567777777777766543211111 234555556777888888888766655 455532 2233334578888899
Q ss_pred HHHHHHHHHHHccCCCCCcchHHHHHHHh
Q 007808 481 ELAELALERLTELEPKNPANFVMLSNIYG 509 (589)
Q Consensus 481 ~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 509 (589)
++|++-|+++++.+|....+....+++--
T Consensus 185 eealeDyKki~E~dPs~~ear~~i~rl~~ 213 (271)
T KOG4234|consen 185 EEALEDYKKILESDPSRREAREAIARLPP 213 (271)
T ss_pred HHHHHHHHHHHHhCcchHHHHHHHHhcCH
Confidence 99999999999999986666666655533
No 293
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=93.98 E-value=1.4 Score=36.87 Aligned_cols=103 Identities=9% Similarity=0.053 Sum_probs=51.4
Q ss_pred HHHHHHhhhCCCCCCcccHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchHHHhHHHHHHHcCCChHHHHHHHccCCCC
Q 007808 85 VVLFTQMKKLDAMPNCFTFPIVLKSCVKINALREGEELHCLVLKNGFRANIFVGTALIELYSTGKAIEAAYKVFGEMDER 164 (589)
Q Consensus 85 ~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 164 (589)
.+.++.+.+.+++|+...+..++..+.+.|.+... .+++..++-+|.......+-.+. +....+.++--+|..+
T Consensus 14 lEYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L----~qllq~~Vi~DSk~lA~~LLs~~--~~~~~~~Ql~lDMLkR 87 (167)
T PF07035_consen 14 LEYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQL----HQLLQYHVIPDSKPLACQLLSLG--NQYPPAYQLGLDMLKR 87 (167)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHH----HHHHhhcccCCcHHHHHHHHHhH--ccChHHHHHHHHHHHH
Confidence 34455556667777777777777777777765433 33444444444433332222221 1222233322222222
Q ss_pred CeehHHHHHHHHHhCCCHHHHHHHHHhCC
Q 007808 165 NVVVWTSMINGYISCGDIVSARCLFELAP 193 (589)
Q Consensus 165 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 193 (589)
=...+..++..+...|++-+|+++.+...
T Consensus 88 L~~~~~~iievLL~~g~vl~ALr~ar~~~ 116 (167)
T PF07035_consen 88 LGTAYEEIIEVLLSKGQVLEALRYARQYH 116 (167)
T ss_pred hhhhHHHHHHHHHhCCCHHHHHHHHHHcC
Confidence 12234455566666666666666665543
No 294
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=93.83 E-value=0.56 Score=42.00 Aligned_cols=100 Identities=13% Similarity=0.107 Sum_probs=74.6
Q ss_pred HHHHHhhCC--CCCcchHHHHHHHHHhC-----CChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccC-----------
Q 007808 349 AVDVFNSMD--TKDLITWNTIISGLAMH-----GRGAGALSLFHEMKNAGEMPDGITFIGILCACTHMG----------- 410 (589)
Q Consensus 349 A~~~~~~~~--~~~~~~~~~l~~~~~~~-----~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g----------- 410 (589)
.++.|..+. ++|-.+|..++..+... +..+-....++.|.+.|+.-|..+|+.|+..+-+..
T Consensus 53 ~e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F 132 (406)
T KOG3941|consen 53 VEKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVF 132 (406)
T ss_pred hhhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHH
Confidence 345555555 45667777777776643 455666677888999999999999999988765532
Q ss_pred -----cHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHH
Q 007808 411 -----LVEEGLSYFQSMAMDYSIVPQIEHYGCMVDLLARAGRLA 449 (589)
Q Consensus 411 -----~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 449 (589)
+-+-++.++++| +.+|+.||..+-..|++++.+.+..-
T Consensus 133 ~HYP~QQ~C~I~vLeqM-E~hGVmPdkE~e~~lvn~FGr~~~p~ 175 (406)
T KOG3941|consen 133 LHYPQQQNCAIKVLEQM-EWHGVMPDKEIEDILVNAFGRWNFPT 175 (406)
T ss_pred hhCchhhhHHHHHHHHH-HHcCCCCchHHHHHHHHHhccccccH
Confidence 234577889999 67799999999999999998888643
No 295
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=93.69 E-value=20 Score=42.77 Aligned_cols=64 Identities=14% Similarity=0.139 Sum_probs=54.6
Q ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHccCCCCCcchHHHHHHHhhcCChHHHHHHHHHhhhCCC
Q 007808 464 AVIWANLLGSCRVYKNVELAELALERLTELEPKNPANFVMLSNIYGDLGRWKDVARIKVAMRDTGF 529 (589)
Q Consensus 464 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 529 (589)
..+|....+.....|.++.|...+-.+.+..+ +.++...+..+...|+...|+.++++......
T Consensus 1670 ge~wLqsAriaR~aG~~q~A~nall~A~e~r~--~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~ 1733 (2382)
T KOG0890|consen 1670 GECWLQSARIARLAGHLQRAQNALLNAKESRL--PEIVLERAKLLWQTGDELNALSVLQEILSKNF 1733 (2382)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHhhhhccc--chHHHHHHHHHHhhccHHHHHHHHHHHHHhhc
Confidence 46777777888889999999999988888774 67899999999999999999999998875443
No 296
>PRK10941 hypothetical protein; Provisional
Probab=93.67 E-value=0.53 Score=43.07 Aligned_cols=77 Identities=18% Similarity=0.094 Sum_probs=66.6
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHccCCCCCcchHHHHHHHhhcCChHHHHHHHHHhhhCCCccCCccceeeeCCeee
Q 007808 466 IWANLLGSCRVYKNVELAELALERLTELEPKNPANFVMLSNIYGDLGRWKDVARIKVAMRDTGFKKLPGCSSIEVNEVVM 545 (589)
Q Consensus 466 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 545 (589)
..+.+-.+|.+.++++.|..+.+.++.+.|+++.-+..-+-+|.+.|.+..|..-++.-.
T Consensus 183 ml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl-------------------- 242 (269)
T PRK10941 183 LLDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFV-------------------- 242 (269)
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHH--------------------
Confidence 345566788999999999999999999999999999999999999999999999888875
Q ss_pred eeccccCCCchHHHHHHHHHH
Q 007808 546 LGCLSRELDRKSIVRAEANMI 566 (589)
Q Consensus 546 ~~~~~~~p~~~~~~~~l~~~~ 566 (589)
+..|++|.+...-..+.
T Consensus 243 ----~~~P~dp~a~~ik~ql~ 259 (269)
T PRK10941 243 ----EQCPEDPISEMIRAQIH 259 (269)
T ss_pred ----HhCCCchhHHHHHHHHH
Confidence 67788888877666654
No 297
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=93.65 E-value=0.1 Score=30.72 Aligned_cols=28 Identities=25% Similarity=0.033 Sum_probs=20.5
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHcc
Q 007808 466 IWANLLGSCRVYKNVELAELALERLTEL 493 (589)
Q Consensus 466 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 493 (589)
+|..+...|.+.|++++|+++|++++.+
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l 28 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALAL 28 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 3567778888888888888888885543
No 298
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=93.47 E-value=0.1 Score=47.73 Aligned_cols=104 Identities=14% Similarity=0.072 Sum_probs=77.1
Q ss_pred HHHHHhcCCHHHHHHHHhhC-CCCC-CHHHHHHHHHHHhcCCCHHHHHHHHHHHHccCCCCCcchHHHHHHHhhcCChHH
Q 007808 439 VDLLARAGRLAEAVDFVKRM-PIEA-DAVIWANLLGSCRVYKNVELAELALERLTELEPKNPANFVMLSNIYGDLGRWKD 516 (589)
Q Consensus 439 ~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 516 (589)
.+.|.+.|++++|++.|.+. ...| +..++..-..+|.+...+..|+.-...++.++-.-..+|..-+.+-...|+..+
T Consensus 104 GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg~~~E 183 (536)
T KOG4648|consen 104 GNTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLGNNME 183 (536)
T ss_pred hhhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHhhHHH
Confidence 56788888888888888775 4566 777777777888888888888888888888776555566666666666666666
Q ss_pred HHHHHHHhhhCCCccCCccceeeeCCeeeeeccccCCCchHHHHHHHHHH
Q 007808 517 VARIKVAMRDTGFKKLPGCSSIEVNEVVMLGCLSRELDRKSIVRAEANMI 566 (589)
Q Consensus 517 A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~~ 566 (589)
|.+-++.+. ++.|++-+.--.++.+-
T Consensus 184 AKkD~E~vL------------------------~LEP~~~ELkK~~a~i~ 209 (536)
T KOG4648|consen 184 AKKDCETVL------------------------ALEPKNIELKKSLARIN 209 (536)
T ss_pred HHHhHHHHH------------------------hhCcccHHHHHHHHHhc
Confidence 666666654 89999877666666664
No 299
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=93.47 E-value=0.18 Score=37.23 Aligned_cols=79 Identities=13% Similarity=0.137 Sum_probs=53.9
Q ss_pred HHHHHHHHccCCCCCcchHHHHHHHhhcCChHHHHHHHHHhhhCCCccCCccceeeeCCeeeeeccccCCCchHHHHHHH
Q 007808 484 ELALERLTELEPKNPANFVMLSNIYGDLGRWKDVARIKVAMRDTGFKKLPGCSSIEVNEVVMLGCLSRELDRKSIVRAEA 563 (589)
Q Consensus 484 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~ 563 (589)
...+++.++.+|+|......++..+...|++++|++.+-++.+.. .+.++..+-..|=
T Consensus 8 ~~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~d----------------------r~~~~~~ar~~ll 65 (90)
T PF14561_consen 8 IAALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRD----------------------RDYEDDAARKRLL 65 (90)
T ss_dssp HHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-----------------------TTCCCCHHHHHHH
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC----------------------ccccccHHHHHHH
Confidence 456777888899999999999999999999999999887775222 2234566667777
Q ss_pred HHHHHcccC-CCCcchHhhhhh
Q 007808 564 NMIKLLPQN-NHPLTFIVVIFS 584 (589)
Q Consensus 564 ~~~~~~~~~-~~~~~~~~~~~~ 584 (589)
.++..+|.. |-+.++-..|++
T Consensus 66 ~~f~~lg~~~plv~~~RRkL~~ 87 (90)
T PF14561_consen 66 DIFELLGPGDPLVSEYRRKLAS 87 (90)
T ss_dssp HHHHHH-TT-HHHHHHHHHHHH
T ss_pred HHHHHcCCCChHHHHHHHHHHH
Confidence 777777774 345555555543
No 300
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.35 E-value=2.7 Score=36.76 Aligned_cols=62 Identities=11% Similarity=0.055 Sum_probs=36.6
Q ss_pred HHHHHHHhc-CCHHHHHHHHhhCC-----CCCCHHHHHHHH---HHHhcCCCHHHHHHHHHHHHccCCCCC
Q 007808 437 CMVDLLARA-GRLAEAVDFVKRMP-----IEADAVIWANLL---GSCRVYKNVELAELALERLTELEPKNP 498 (589)
Q Consensus 437 ~l~~~~~~~-g~~~~A~~~~~~~~-----~~p~~~~~~~l~---~~~~~~g~~~~A~~~~~~~~~~~p~~~ 498 (589)
.+...|..- .++++|+..|+... ...+...-.+++ .--...+++.+|+.+|+++....-+|+
T Consensus 118 ~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~ 188 (288)
T KOG1586|consen 118 EIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDNN 188 (288)
T ss_pred hHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccch
Confidence 345555544 56777777777662 112222222333 223577899999999999887554433
No 301
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=93.31 E-value=0.53 Score=46.59 Aligned_cols=160 Identities=18% Similarity=0.123 Sum_probs=104.7
Q ss_pred CCCHhHHHHHHHHHhc--cCcHHHHHHHHHHhHHhcCCCCChHHHHH--HHHHHHh-cCCHHHHHHHHhhC-CCCCC--H
Q 007808 393 MPDGITFIGILCACTH--MGLVEEGLSYFQSMAMDYSIVPQIEHYGC--MVDLLAR-AGRLAEAVDFVKRM-PIEAD--A 464 (589)
Q Consensus 393 ~p~~~~~~~l~~~~~~--~g~~~~A~~~~~~~~~~~~~~~~~~~~~~--l~~~~~~-~g~~~~A~~~~~~~-~~~p~--~ 464 (589)
-|+..+...++.-... ....+-+-.++-.| +. |+...|.. +...|.+ .|+...|...+..+ ...|. .
T Consensus 568 ~~~~~~~k~~~~r~~~~~i~e~e~~~~~~~~~-~~----~~~p~w~~ln~aglywr~~gn~~~a~~cl~~a~~~~p~~~~ 642 (886)
T KOG4507|consen 568 MPDDHARKILLSRINNYTIPEEEIGSFLFHAI-NK----PNAPIWLILNEAGLYWRAVGNSTFAIACLQRALNLAPLQQD 642 (886)
T ss_pred CchHHHHHHHHHHHhcccCcHHHHHHHHHHHh-cC----CCCCeEEEeecccceeeecCCcHHHHHHHHHHhccChhhhc
Confidence 3555555444433221 12233444444444 22 44333332 2344544 68888898888776 33342 2
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHccCCCCCcchHHHHHHHhhcCChHHHHHHHHHhhhCCCccCCccceeeeCCee
Q 007808 465 VIWANLLGSCRVYKNVELAELALERLTELEPKNPANFVMLSNIYGDLGRWKDVARIKVAMRDTGFKKLPGCSSIEVNEVV 544 (589)
Q Consensus 465 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 544 (589)
...-.|.+...+.|-...|-.++.+.+.+....|-++..++++|....+.+.|++.++...
T Consensus 643 v~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~~a~~~~~~a~------------------- 703 (886)
T KOG4507|consen 643 VPLVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNISGALEAFRQAL------------------- 703 (886)
T ss_pred ccHHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhHHHHHHHHHHH-------------------
Confidence 2334455666777888889999999999887778889999999999999999999988875
Q ss_pred eeeccccCCCchHHHHHHHHHHHHcccCCCCcchHhhhhhcccCC
Q 007808 545 MLGCLSRELDRKSIVRAEANMIKLLPQNNHPLTFIVVIFSTFASV 589 (589)
Q Consensus 545 ~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 589 (589)
+++|+++.+.+.|-.|-. .++-..|++-|.||
T Consensus 704 -----~~~~~~~~~~~~l~~i~c--------~~~~~~~~~~~~sv 735 (886)
T KOG4507|consen 704 -----KLTTKCPECENSLKLIRC--------MQFYPFLYNITSSV 735 (886)
T ss_pred -----hcCCCChhhHHHHHHHHH--------hhhhhHHHhccccc
Confidence 788899999888888754 34555666666655
No 302
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=93.23 E-value=0.2 Score=43.64 Aligned_cols=86 Identities=15% Similarity=0.105 Sum_probs=68.6
Q ss_pred HHHHhcCCHHHHHHHHhhC-CCCCCHHH-HHHHHHHHhcCCCHHHHHHHHHHHHccCCCCCcchHHHHHHHhhcCChHHH
Q 007808 440 DLLARAGRLAEAVDFVKRM-PIEADAVI-WANLLGSCRVYKNVELAELALERLTELEPKNPANFVMLSNIYGDLGRWKDV 517 (589)
Q Consensus 440 ~~~~~~g~~~~A~~~~~~~-~~~p~~~~-~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A 517 (589)
+.|....++..|+..|.+. .+.|...+ |..-+-++.+..+++.+.+-..+++++.|+.......++..+.....+++|
T Consensus 18 nk~f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~~ea 97 (284)
T KOG4642|consen 18 NKCFIPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGYDEA 97 (284)
T ss_pred ccccchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhccccHH
Confidence 3455667788888877776 56777644 455556677888899999999999999999888889999999999999999
Q ss_pred HHHHHHhh
Q 007808 518 ARIKVAMR 525 (589)
Q Consensus 518 ~~~~~~~~ 525 (589)
+..+.+..
T Consensus 98 I~~Lqra~ 105 (284)
T KOG4642|consen 98 IKVLQRAY 105 (284)
T ss_pred HHHHHHHH
Confidence 99888873
No 303
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=93.19 E-value=6.1 Score=35.41 Aligned_cols=255 Identities=15% Similarity=0.175 Sum_probs=140.3
Q ss_pred cCCHHHHHHHHhhCCC----C---CchhHHHHHHHHHhCCChHHHHHHHHHHHHc---CCC--CCcHHHHHHHHHHHHhc
Q 007808 241 NGDVEECKRLFEEMPE----R---NVFSWNGLIGGYANNGLFFEVLDAFKRMLTE---GRV--FPNDATIVTVLSACARL 308 (589)
Q Consensus 241 ~~~~~~A~~~~~~~~~----~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~--~p~~~~~~~l~~~~~~~ 308 (589)
....++|+.-|.++.+ . ...+...++..+.+.|++++.+..|.+++.- . + .-+..+.+.++.....+
T Consensus 40 e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSA-VTrNySEKsIN~IlDyiStS 118 (440)
T KOG1464|consen 40 EDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSA-VTRNYSEKSINSILDYISTS 118 (440)
T ss_pred ccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHH-HhccccHHHHHHHHHHHhhh
Confidence 3456666666665543 1 1233445667777778887777777766431 1 1 12344566666666666
Q ss_pred CChhHHHHHHHHHHHc-----CCCCChhHHHHHHHHHHhcCChHHHHHHHhhCCCC---------------CcchHHHHH
Q 007808 309 GALDFSKWVHVYAEYN-----GYQGNVCVGNALIDMYAKCGIIENAVDVFNSMDTK---------------DLITWNTII 368 (589)
Q Consensus 309 ~~~~~a~~~~~~~~~~-----~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---------------~~~~~~~l~ 368 (589)
.+.+.-..+++.-.+. +-..--.+-..|...|...|++.+..++++++... -...|..-|
T Consensus 119 ~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEI 198 (440)
T KOG1464|consen 119 KNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEI 198 (440)
T ss_pred hhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHh
Confidence 6666555555433221 11111223345677777778888888877776521 124566778
Q ss_pred HHHHhCCChHHHHHHHHHHHH-CCCCCCHhHHHHHHHHH-----hccCcHHHHHHHHHHhHHhcCC--CCC---hHHHHH
Q 007808 369 SGLAMHGRGAGALSLFHEMKN-AGEMPDGITFIGILCAC-----THMGLVEEGLSYFQSMAMDYSI--VPQ---IEHYGC 437 (589)
Q Consensus 369 ~~~~~~~~~~~A~~~~~~m~~-~~~~p~~~~~~~l~~~~-----~~~g~~~~A~~~~~~~~~~~~~--~~~---~~~~~~ 437 (589)
+.|..+.+..+-..++++... ..-.|.+... .+++-| .+.|++++|..-|-++.+.+.- .|. .--|..
T Consensus 199 QmYT~qKnNKkLK~lYeqalhiKSAIPHPlIm-GvIRECGGKMHlreg~fe~AhTDFFEAFKNYDEsGspRRttCLKYLV 277 (440)
T KOG1464|consen 199 QMYTEQKNNKKLKALYEQALHIKSAIPHPLIM-GVIRECGGKMHLREGEFEKAHTDFFEAFKNYDESGSPRRTTCLKYLV 277 (440)
T ss_pred hhhhhhcccHHHHHHHHHHHHhhccCCchHHH-hHHHHcCCccccccchHHHHHhHHHHHHhcccccCCcchhHHHHHHH
Confidence 888888888888888887765 2234554443 344444 4568888886544444343221 122 223556
Q ss_pred HHHHHHhcCC----HHHHHHHHhhCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHccCCCCCcchH
Q 007808 438 MVDLLARAGR----LAEAVDFVKRMPIEADAVIWANLLGSCRVYKNVELAELALERLTELEPKNPANFV 502 (589)
Q Consensus 438 l~~~~~~~g~----~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ 502 (589)
|.+.+.+.|- ..+|. -....|.......++.+|. .++..+-+++++.-...--++|....
T Consensus 278 LANMLmkS~iNPFDsQEAK----PyKNdPEIlAMTnlv~aYQ-~NdI~eFE~Il~~~~~~IM~DpFIRe 341 (440)
T KOG1464|consen 278 LANMLMKSGINPFDSQEAK----PYKNDPEILAMTNLVAAYQ-NNDIIEFERILKSNRSNIMDDPFIRE 341 (440)
T ss_pred HHHHHHHcCCCCCcccccC----CCCCCHHHHHHHHHHHHHh-cccHHHHHHHHHhhhccccccHHHHH
Confidence 6677776652 11110 0124566677778888884 44666555555544432233344333
No 304
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.17 E-value=4.9 Score=34.26 Aligned_cols=110 Identities=9% Similarity=0.051 Sum_probs=72.7
Q ss_pred HHHHHHHHHHHCCCCCCHhHHH-----HHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHH-----HHHHHHHhcCCH
Q 007808 379 GALSLFHEMKNAGEMPDGITFI-----GILCACTHMGLVEEGLSYFQSMAMDYSIVPQIEHYG-----CMVDLLARAGRL 448 (589)
Q Consensus 379 ~A~~~~~~m~~~~~~p~~~~~~-----~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~-----~l~~~~~~~g~~ 448 (589)
+.....+++... +...+|. .+...+...+++++|...++.... .+.| ..+. .|.......|.+
T Consensus 70 ~~~~~~ekf~~~---n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~---~t~D-e~lk~l~~lRLArvq~q~~k~ 142 (207)
T COG2976 70 KSIAAAEKFVQA---NGKTIYAVLAALELAKAEVEANNLDKAEAQLKQALA---QTKD-ENLKALAALRLARVQLQQKKA 142 (207)
T ss_pred hhHHHHHHHHhh---ccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHc---cchh-HHHHHHHHHHHHHHHHHhhhH
Confidence 455555666653 2222332 344567788999999988887753 2222 2222 455678889999
Q ss_pred HHHHHHHhhCCCCC--CHHHHHHHHHHHhcCCCHHHHHHHHHHHHccCCC
Q 007808 449 AEAVDFVKRMPIEA--DAVIWANLLGSCRVYKNVELAELALERLTELEPK 496 (589)
Q Consensus 449 ~~A~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 496 (589)
++|+..++... .+ .......-...+...|+-++|...|+++++..++
T Consensus 143 D~AL~~L~t~~-~~~w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~~s 191 (207)
T COG2976 143 DAALKTLDTIK-EESWAAIVAELRGDILLAKGDKQEARAAYEKALESDAS 191 (207)
T ss_pred HHHHHHHhccc-cccHHHHHHHHhhhHHHHcCchHHHHHHHHHHHHccCC
Confidence 99999998774 22 2223334447788999999999999999988754
No 305
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=93.13 E-value=16 Score=40.16 Aligned_cols=135 Identities=14% Similarity=0.098 Sum_probs=62.4
Q ss_pred HHHhcCChHHHHHHHhhCCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCcHHHHHHH
Q 007808 339 MYAKCGIIENAVDVFNSMDTKDLITWNTIISGLAMHGRGAGALSLFHEMKNAGEMPDGITFIGILCACTHMGLVEEGLSY 418 (589)
Q Consensus 339 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~ 418 (589)
.--+.|-+.+|+.++..-.+.-...|.+...-+.+...+++|.-.|+..-+ ....+.+|...|+|.+|..+
T Consensus 917 ~I~kh~Ly~~aL~ly~~~~e~~k~i~~~ya~hL~~~~~~~~Aal~Ye~~Gk---------lekAl~a~~~~~dWr~~l~~ 987 (1265)
T KOG1920|consen 917 YIKKHGLYDEALALYKPDSEKQKVIYEAYADHLREELMSDEAALMYERCGK---------LEKALKAYKECGDWREALSL 987 (1265)
T ss_pred HHHhcccchhhhheeccCHHHHHHHHHHHHHHHHHhccccHHHHHHHHhcc---------HHHHHHHHHHhccHHHHHHH
Confidence 333444444444444322222223333344444445555555555543321 12244556666667666666
Q ss_pred HHHhHHhcCCCCC--hHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Q 007808 419 FQSMAMDYSIVPQ--IEHYGCMVDLLARAGRLAEAVDFVKRMPIEADAVIWANLLGSCRVYKNVELAELALERLT 491 (589)
Q Consensus 419 ~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 491 (589)
..++.. .-+ ..+-..|+.-+...+++-+|-++..+...+|.. .+..+++...+++|.+......
T Consensus 988 a~ql~~----~~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~sd~~~-----av~ll~ka~~~~eAlrva~~~~ 1053 (1265)
T KOG1920|consen 988 AAQLSE----GKDELVILAEELVSRLVEQRKHYEAAKILLEYLSDPEE-----AVALLCKAKEWEEALRVASKAK 1053 (1265)
T ss_pred HHhhcC----CHHHHHHHHHHHHHHHHHcccchhHHHHHHHHhcCHHH-----HHHHHhhHhHHHHHHHHHHhcc
Confidence 655521 111 111234555666666766666666665433322 1223334445555555444433
No 306
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=92.91 E-value=11 Score=37.40 Aligned_cols=177 Identities=9% Similarity=0.038 Sum_probs=107.9
Q ss_pred CCChhHHHHHHHHHHhcCChHHHHHHHhhCC--CCCcchHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHhHHHHHHH
Q 007808 327 QGNVCVGNALIDMYAKCGIIENAVDVFNSMD--TKDLITWNTIISGLAMHGRGAGALSLFHEMKNAGEMPDGITFIGILC 404 (589)
Q Consensus 327 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~ 404 (589)
+.+.....+++..+....++.-.+.+..+|. ..+-..|..++++|.++ ..+.-..+|+++.+..+ .|.+.-..|+.
T Consensus 63 ~l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~e~kmal~el~q~y~en-~n~~l~~lWer~ve~df-nDvv~~ReLa~ 140 (711)
T COG1747 63 LLDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYGESKMALLELLQCYKEN-GNEQLYSLWERLVEYDF-NDVVIGRELAD 140 (711)
T ss_pred cccchHHHHHHHHhccchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcc-hhHHHHHHHHH
Confidence 3344455566777776666666666666665 34556777788888877 55777888888877532 23333334444
Q ss_pred HHhccCcHHHHHHHHHHhHHhcCCCCC------hHHHHHHHHHHHhcCCHHHHHHHHhhCC----CCCCHHHHHHHHHHH
Q 007808 405 ACTHMGLVEEGLSYFQSMAMDYSIVPQ------IEHYGCMVDLLARAGRLAEAVDFVKRMP----IEADAVIWANLLGSC 474 (589)
Q Consensus 405 ~~~~~g~~~~A~~~~~~~~~~~~~~~~------~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~p~~~~~~~l~~~~ 474 (589)
.|.+ ++.+.+..+|.++... +.|. ...|..|...- ..+.+..+.+..++. ...-...+.-+..-|
T Consensus 141 ~yEk-ik~sk~a~~f~Ka~yr--fI~~~q~~~i~evWeKL~~~i--~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Y 215 (711)
T COG1747 141 KYEK-IKKSKAAEFFGKALYR--FIPRRQNAAIKEVWEKLPELI--GDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKY 215 (711)
T ss_pred HHHH-hchhhHHHHHHHHHHH--hcchhhhhhHHHHHHHHHHhc--cccHHHHHHHHHHHHHhhccchHHHHHHHHHHHh
Confidence 4444 7777777777777542 2331 12344433311 334555555555542 222334444555667
Q ss_pred hcCCCHHHHHHHHHHHHccCCCCCcchHHHHHHHhh
Q 007808 475 RVYKNVELAELALERLTELEPKNPANFVMLSNIYGD 510 (589)
Q Consensus 475 ~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 510 (589)
....++.+|++++..+++.+..|.-+...++.-+..
T Consensus 216 s~~eN~~eai~Ilk~il~~d~k~~~ar~~~i~~lRd 251 (711)
T COG1747 216 SENENWTEAIRILKHILEHDEKDVWARKEIIENLRD 251 (711)
T ss_pred ccccCHHHHHHHHHHHhhhcchhhhHHHHHHHHHHH
Confidence 788889999999998888887777777777666554
No 307
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=92.90 E-value=2.7 Score=35.88 Aligned_cols=96 Identities=9% Similarity=0.019 Sum_probs=55.3
Q ss_pred hHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCH--hHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHH--HH
Q 007808 363 TWNTIISGLAMHGRGAGALSLFHEMKNAGEMPDG--ITFIGILCACTHMGLVEEGLSYFQSMAMDYSIVPQIEHYG--CM 438 (589)
Q Consensus 363 ~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~--~l 438 (589)
.+..+..-|++.|+.++|++.|.++.+....|.. ..+..+++.....+++..+...+.++..-.....|....+ ..
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk~ 117 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLKV 117 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHHH
Confidence 4555667777777777777777777775444433 2355666777777777777777666633211111111111 11
Q ss_pred --HHHHHhcCCHHHHHHHHhhC
Q 007808 439 --VDLLARAGRLAEAVDFVKRM 458 (589)
Q Consensus 439 --~~~~~~~g~~~~A~~~~~~~ 458 (589)
.-.+...+++.+|-+.|-+.
T Consensus 118 ~~gL~~l~~r~f~~AA~~fl~~ 139 (177)
T PF10602_consen 118 YEGLANLAQRDFKEAAELFLDS 139 (177)
T ss_pred HHHHHHHHhchHHHHHHHHHcc
Confidence 12234567888877777665
No 308
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=92.87 E-value=2.5 Score=35.96 Aligned_cols=90 Identities=12% Similarity=0.010 Sum_probs=67.2
Q ss_pred HHHHHHhcCCHHHHHHHHhhCCCCCCHHHHHHHH-----HHHhcCCCHHHHHHHHHHHHccCCCCCcchHHHHHHHhhcC
Q 007808 438 MVDLLARAGRLAEAVDFVKRMPIEADAVIWANLL-----GSCRVYKNVELAELALERLTELEPKNPANFVMLSNIYGDLG 512 (589)
Q Consensus 438 l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~-----~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 512 (589)
+...+..+|++++|+.-++...-.|....+..++ ......|.+++|...++...+-.-. +..-..-++++...|
T Consensus 95 lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w~-~~~~elrGDill~kg 173 (207)
T COG2976 95 LAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESWA-AIVAELRGDILLAKG 173 (207)
T ss_pred HHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccHH-HHHHHHhhhHHHHcC
Confidence 4567889999999999999774345444444443 5678899999999888776553322 223456689999999
Q ss_pred ChHHHHHHHHHhhhCC
Q 007808 513 RWKDVARIKVAMRDTG 528 (589)
Q Consensus 513 ~~~~A~~~~~~~~~~~ 528 (589)
+.++|..-|++....+
T Consensus 174 ~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 174 DKQEARAAYEKALESD 189 (207)
T ss_pred chHHHHHHHHHHHHcc
Confidence 9999999999997554
No 309
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=92.77 E-value=1.6 Score=40.85 Aligned_cols=140 Identities=11% Similarity=0.106 Sum_probs=87.0
Q ss_pred cHHHHHHhccC-Cc----hHHHHHHHHHHhCCCCCccchHHHHHHHHc--c----CChhHHHHHhhcCCC-------CCc
Q 007808 4 TTGAHSEQLET-TK----HLHQIQTQVVTSGLEKSDYITPRIITACAQ--L----KQMTYARKMFDKITD-------QNV 65 (589)
Q Consensus 4 ~~~~~~~~~~~-~~----~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~--~----~~~~~A~~~~~~~~~-------~~~ 65 (589)
++++++..-+. +. ....+++.|.+.|+..+..+|....-.+.. . -....|..+|+.|++ ++-
T Consensus 62 ~la~~l~~~~~~p~~~~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D 141 (297)
T PF13170_consen 62 ILAALLDISFEDPEEAFKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPED 141 (297)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccc
Confidence 44455544444 32 236889999999999998877664444443 1 246778889988876 344
Q ss_pred ccHHHHHHHHHcCCCh----hHHHHHHHHhhhCCCCCCcc-cHHHHHHHHhcc-CC--hHHHHHHHHHHHHhCCCCchHH
Q 007808 66 VSWNAMFNGYAQNEFH----RTVVVLFTQMKKLDAMPNCF-TFPIVLKSCVKI-NA--LREGEELHCLVLKNGFRANIFV 137 (589)
Q Consensus 66 ~~~~~ll~~~~~~~~~----~~a~~~~~~m~~~~~~p~~~-~~~~ll~~~~~~-~~--~~~a~~~~~~~~~~~~~~~~~~ 137 (589)
.++.+++.. ..+++ +.+..+|+.+.+.|...+.. -+.+-+-++... .. ...+.++++.+.+.|+++....
T Consensus 142 ~~~a~lLA~--~~~~~e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~ 219 (297)
T PF13170_consen 142 YPFAALLAM--TSEDVEELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMH 219 (297)
T ss_pred hhHHHHHhc--ccccHHHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCcccccc
Confidence 455566554 33444 44566777787777654443 233333333322 22 3467888999999998888877
Q ss_pred HhHHHHHH
Q 007808 138 GTALIELY 145 (589)
Q Consensus 138 ~~~li~~~ 145 (589)
|..+.-..
T Consensus 220 yp~lGlLa 227 (297)
T PF13170_consen 220 YPTLGLLA 227 (297)
T ss_pred ccHHHHHH
Confidence 77655433
No 310
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=92.58 E-value=0.51 Score=43.01 Aligned_cols=61 Identities=21% Similarity=0.249 Sum_probs=46.3
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHccCCCCCcchHHHHHHHhhcCChHHHHHHHHHhhh
Q 007808 466 IWANLLGSCRVYKNVELAELALERLTELEPKNPANFVMLSNIYGDLGRWKDVARIKVAMRD 526 (589)
Q Consensus 466 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 526 (589)
++..++..+...|+.+.+.+.+++.+..+|-+...|..++..|.+.|+...|+..|+.+.+
T Consensus 155 ~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~ 215 (280)
T COG3629 155 ALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKK 215 (280)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHH
Confidence 3444556666777788888888888888888788888888888888888888888777754
No 311
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=92.51 E-value=9 Score=35.67 Aligned_cols=22 Identities=9% Similarity=-0.085 Sum_probs=11.0
Q ss_pred HHHHHhCCChHHHHHHHHHHHH
Q 007808 368 ISGLAMHGRGAGALSLFHEMKN 389 (589)
Q Consensus 368 ~~~~~~~~~~~~A~~~~~~m~~ 389 (589)
+..+.+.++.+++.+.+.+|..
T Consensus 128 l~il~~~~~~~~~~~~L~~mi~ 149 (278)
T PF08631_consen 128 LEILLKSFDEEEYEEILMRMIR 149 (278)
T ss_pred HHHHhccCChhHHHHHHHHHHH
Confidence 3444444555555555555554
No 312
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=92.35 E-value=4.8 Score=34.84 Aligned_cols=157 Identities=15% Similarity=0.099 Sum_probs=79.3
Q ss_pred cchHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCC-HhHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHH
Q 007808 361 LITWNTIISGLAMHGRGAGALSLFHEMKNAGEMPD-GITFIGILCACTHMGLVEEGLSYFQSMAMDYSIVPQIEHYGCMV 439 (589)
Q Consensus 361 ~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~ 439 (589)
+.+||-+.--+...|+++.|.+.|+...+. .|. ..+...-.-++.-.|++.-|.+-+.+.-+.-...|=...|..+.
T Consensus 99 ~~vfNyLG~Yl~~a~~fdaa~eaFds~~EL--Dp~y~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ~D~~DPfR~LWLYl~ 176 (297)
T COG4785 99 PEVFNYLGIYLTQAGNFDAAYEAFDSVLEL--DPTYNYAHLNRGIALYYGGRYKLAQDDLLAFYQDDPNDPFRSLWLYLN 176 (297)
T ss_pred HHHHHHHHHHHHhcccchHHHHHhhhHhcc--CCcchHHHhccceeeeecCchHhhHHHHHHHHhcCCCChHHHHHHHHH
Confidence 356777766677777777777777777763 342 22222212223345777777665554433222222233333222
Q ss_pred HHHHhcCCHHHHHHHH-hhCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHccCCCC-------CcchHHHHHHHhhc
Q 007808 440 DLLARAGRLAEAVDFV-KRMPIEADAVIWANLLGSCRVYKNVELAELALERLTELEPKN-------PANFVMLSNIYGDL 511 (589)
Q Consensus 440 ~~~~~~g~~~~A~~~~-~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~-------~~~~~~l~~~~~~~ 511 (589)
. +.-++.+|..-+ ++.. ..|...|...+-.+. .|+.. -+.+++++.+-..++ .++|..|+..+...
T Consensus 177 E---~k~dP~~A~tnL~qR~~-~~d~e~WG~~iV~~y-LgkiS-~e~l~~~~~a~a~~n~~~Ae~LTEtyFYL~K~~l~~ 250 (297)
T COG4785 177 E---QKLDPKQAKTNLKQRAE-KSDKEQWGWNIVEFY-LGKIS-EETLMERLKADATDNTSLAEHLTETYFYLGKYYLSL 250 (297)
T ss_pred H---hhCCHHHHHHHHHHHHH-hccHhhhhHHHHHHH-Hhhcc-HHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHhcc
Confidence 2 333555555433 3332 223333433332221 11111 112333333322221 45788888888888
Q ss_pred CChHHHHHHHHHhh
Q 007808 512 GRWKDVARIKVAMR 525 (589)
Q Consensus 512 g~~~~A~~~~~~~~ 525 (589)
|+.++|..+++-..
T Consensus 251 G~~~~A~~LfKLai 264 (297)
T COG4785 251 GDLDEATALFKLAV 264 (297)
T ss_pred ccHHHHHHHHHHHH
Confidence 88888888888775
No 313
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=92.15 E-value=0.45 Score=39.09 Aligned_cols=129 Identities=16% Similarity=0.108 Sum_probs=75.5
Q ss_pred HHHHHHhccCChHHHHHHHHHHHHhCCCCchHHHhHHHHHHHcCCChHHHHHHHccCCCCCeehHHHHHHHHHhCCCHHH
Q 007808 105 IVLKSCVKINALREGEELHCLVLKNGFRANIFVGTALIELYSTGKAIEAAYKVFGEMDERNVVVWTSMINGYISCGDIVS 184 (589)
Q Consensus 105 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 184 (589)
.++..+...+.+......++.+...+...+....+.++..|++.++.++..++++.... .-...+++.+.+.|.+++
T Consensus 12 ~vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~~---yd~~~~~~~c~~~~l~~~ 88 (143)
T PF00637_consen 12 EVISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTSNN---YDLDKALRLCEKHGLYEE 88 (143)
T ss_dssp CCHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSSS---S-CTHHHHHHHTTTSHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccccc---cCHHHHHHHHHhcchHHH
Confidence 34566667778888888888888776666778888888888888888888888874433 233445666666666666
Q ss_pred HHHHHHhCCCCChhHHHHHHHHHhcCCChHHHHHHhcccCCCChhhHHHHHHHHHhcCC
Q 007808 185 ARCLFELAPERDVILWNTIVSGYIDVRNMIEARKLFDQMPKKDVISWNTMLSGYANNGD 243 (589)
Q Consensus 185 a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~ 243 (589)
+.-++.++...+.. +..+...++++.|.+...+. ++...|..++..+...+.
T Consensus 89 a~~Ly~~~~~~~~a-----l~i~~~~~~~~~a~e~~~~~--~~~~l~~~l~~~~l~~~~ 140 (143)
T PF00637_consen 89 AVYLYSKLGNHDEA-----LEILHKLKDYEEAIEYAKKV--DDPELWEQLLKYCLDSKP 140 (143)
T ss_dssp HHHHHHCCTTHTTC-----SSTSSSTHCSCCCTTTGGGC--SSSHHHHHHHHHHCTSTC
T ss_pred HHHHHHHcccHHHH-----HHHHHHHccHHHHHHHHHhc--CcHHHHHHHHHHHHhcCc
Confidence 66555543321110 00122233344443333322 456677777776665543
No 314
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=92.12 E-value=3.6 Score=33.93 Aligned_cols=85 Identities=11% Similarity=0.125 Sum_probs=45.8
Q ss_pred hccCcHHHHHHHHHHhHHhcCCCCChHHHH-HHHHHHHhcCCHHHHHHHHhhCC-CCCCHHHHHHHHHHH-hcCCCHHHH
Q 007808 407 THMGLVEEGLSYFQSMAMDYSIVPQIEHYG-CMVDLLARAGRLAEAVDFVKRMP-IEADAVIWANLLGSC-RVYKNVELA 483 (589)
Q Consensus 407 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~g~~~~A~~~~~~~~-~~p~~~~~~~l~~~~-~~~g~~~~A 483 (589)
.+.++.+++..++..+. -+.|...... .-...+.+.|++.+|+.+|+++. ..|....-..|+..| ...|+.+ =
T Consensus 21 l~~~~~~D~e~lL~ALr---vLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~~~D~~-W 96 (160)
T PF09613_consen 21 LRLGDPDDAEALLDALR---VLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYALGDPS-W 96 (160)
T ss_pred HccCChHHHHHHHHHHH---HhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHHcCChH-H
Confidence 45567777777777774 3445532222 23345677888888888888773 234333334444333 3344432 2
Q ss_pred HHHHHHHHccCC
Q 007808 484 ELALERLTELEP 495 (589)
Q Consensus 484 ~~~~~~~~~~~p 495 (589)
..+-+++++..|
T Consensus 97 r~~A~evle~~~ 108 (160)
T PF09613_consen 97 RRYADEVLESGA 108 (160)
T ss_pred HHHHHHHHhcCC
Confidence 233444555554
No 315
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=92.08 E-value=0.0069 Score=50.01 Aligned_cols=83 Identities=14% Similarity=0.121 Sum_probs=44.1
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHhhCCCCCcchHHHHHHHHHhCCChHHH
Q 007808 301 VLSACARLGALDFSKWVHVYAEYNGYQGNVCVGNALIDMYAKCGIIENAVDVFNSMDTKDLITWNTIISGLAMHGRGAGA 380 (589)
Q Consensus 301 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 380 (589)
++..+.+.+.+.....+++.+...+...+....+.++..|++.++.++..++++.... .-...++..|.+.|.++++
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~~---yd~~~~~~~c~~~~l~~~a 89 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTSNN---YDLDKALRLCEKHGLYEEA 89 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSSS---S-CTHHHHHHHTTTSHHHH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccccc---cCHHHHHHHHHhcchHHHH
Confidence 3444555556666666666666555455566667777777776665666665553222 2223344445555555555
Q ss_pred HHHHHH
Q 007808 381 LSLFHE 386 (589)
Q Consensus 381 ~~~~~~ 386 (589)
.-++.+
T Consensus 90 ~~Ly~~ 95 (143)
T PF00637_consen 90 VYLYSK 95 (143)
T ss_dssp HHHHHC
T ss_pred HHHHHH
Confidence 544443
No 316
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=92.05 E-value=6.8 Score=35.66 Aligned_cols=58 Identities=12% Similarity=-0.020 Sum_probs=52.4
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHccCCCCCcchHHHHHHHhhcCChHHHHHHHHHhh
Q 007808 468 ANLLGSCRVYKNVELAELALERLTELEPKNPANFVMLSNIYGDLGRWKDVARIKVAMR 525 (589)
Q Consensus 468 ~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 525 (589)
......|...|.+.+|.++.++++.++|-+...+..|...|...|+--.|.+-++++.
T Consensus 283 gkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyerya 340 (361)
T COG3947 283 GKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERYA 340 (361)
T ss_pred HHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHHH
Confidence 3344778999999999999999999999999999999999999999989998888874
No 317
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=92.01 E-value=33 Score=41.04 Aligned_cols=306 Identities=9% Similarity=0.033 Sum_probs=158.7
Q ss_pred HHHHHHHhCCCHHHHHHHHHhCC----CC--ChhHHHHHHHHHhcCCChHHHHHHhcc-cCCCChhhHHHHHHHHHhcCC
Q 007808 171 SMINGYISCGDIVSARCLFELAP----ER--DVILWNTIVSGYIDVRNMIEARKLFDQ-MPKKDVISWNTMLSGYANNGD 243 (589)
Q Consensus 171 ~l~~~~~~~g~~~~a~~~~~~~~----~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~-~~~~~~~~~~~l~~~~~~~~~ 243 (589)
.+..+-.+.+.+.+|+..++.-. +. ....+..+...|...+++|+..-+... ...|+ ....+......|+
T Consensus 1388 tLa~aSfrc~~y~RalmylEs~~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a~~s---l~~qil~~e~~g~ 1464 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESHRSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSARRFADPS---LYQQILEHEASGN 1464 (2382)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhhcCcc---HHHHHHHHHhhcc
Confidence 56667778899999999998832 11 223344445588999999888777763 32232 2234455667899
Q ss_pred HHHHHHHHhhCCC--CC-chhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCcHHHHHH-HHHHHHhcCChhHHHHHHH
Q 007808 244 VEECKRLFEEMPE--RN-VFSWNGLIGGYANNGLFFEVLDAFKRMLTEGRVFPNDATIVT-VLSACARLGALDFSKWVHV 319 (589)
Q Consensus 244 ~~~A~~~~~~~~~--~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~-l~~~~~~~~~~~~a~~~~~ 319 (589)
+..|...|+.+.+ |+ ...++.++......|.++..+-..+-..... .+....++. -+.+.-+.++++.....+.
T Consensus 1465 ~~da~~Cye~~~q~~p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~~--se~~~~~~s~~~eaaW~l~qwD~~e~~l~ 1542 (2382)
T KOG0890|consen 1465 WADAAACYERLIQKDPDKEKHHSGVLKSMLAIQHLSTEILHLDGLIINR--SEEVDELNSLGVEAAWRLSQWDLLESYLS 1542 (2382)
T ss_pred HHHHHHHHHHhhcCCCccccchhhHHHhhhcccchhHHHhhhcchhhcc--CHHHHHHHHHHHHHHhhhcchhhhhhhhh
Confidence 9999999999987 33 5678888888888888888877666555432 233333332 2344466677776666554
Q ss_pred HHHHcCCCCChhHHHH--HHHHHHhcCC---hH--HHHHHHhhCC-CC---------CcchHHHHHHHHHhCCChHHHHH
Q 007808 320 YAEYNGYQGNVCVGNA--LIDMYAKCGI---IE--NAVDVFNSMD-TK---------DLITWNTIISGLAMHGRGAGALS 382 (589)
Q Consensus 320 ~~~~~~~~~~~~~~~~--l~~~~~~~g~---~~--~A~~~~~~~~-~~---------~~~~~~~l~~~~~~~~~~~~A~~ 382 (589)
+.+ ...|.. ++....+..+ +. +.++..++.. .+ -...|..++....-..--.
T Consensus 1543 ---~~n----~e~w~~~~~g~~ll~~~~kD~~~~~~~i~~~r~~~i~~lsa~s~~~Sy~~~Y~~~~kLH~l~el~~---- 1611 (2382)
T KOG0890|consen 1543 ---DRN----IEYWSVESIGKLLLRNKKKDEIATLDLIENSRELVIENLSACSIEGSYVRSYEILMKLHLLLELEN---- 1611 (2382)
T ss_pred ---ccc----ccchhHHHHHHHHHhhcccchhhHHHHHHHHHHHhhhhHHHhhccchHHHHHHHHHHHHHHHHHHH----
Confidence 111 111111 2222222111 10 0111111110 00 0123333433322211100
Q ss_pred HHHHHHHCCCCCCHhH------HHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC-----hHHHHHHHHHHHhcCCHHHH
Q 007808 383 LFHEMKNAGEMPDGIT------FIGILCACTHMGLVEEGLSYFQSMAMDYSIVPQ-----IEHYGCMVDLLARAGRLAEA 451 (589)
Q Consensus 383 ~~~~m~~~~~~p~~~~------~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~g~~~~A 451 (589)
..+.. .++.++..+ |..-+..-....+..+-+--+++........|+ ..+|....+..-+.|+++.|
T Consensus 1612 ~~~~l--~~~s~~~~s~~~sd~W~~Rl~~tq~s~~~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG~~q~A 1689 (2382)
T KOG0890|consen 1612 SIEEL--KKVSYDEDSANNSDNWKNRLERTQPSFRIKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAGHLQRA 1689 (2382)
T ss_pred HHHHh--hccCccccccccchhHHHHHHHhchhHHHHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhcccHHHH
Confidence 00101 112332211 111111100001111111111111111111222 46788888888889999999
Q ss_pred HHHHhhCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHccC
Q 007808 452 VDFVKRMPIEADAVIWANLLGSCRVYKNVELAELALERLTELE 494 (589)
Q Consensus 452 ~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 494 (589)
...+-++...--+..+--....+.+.|+...|..++++.++..
T Consensus 1690 ~nall~A~e~r~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~ 1732 (2382)
T KOG0890|consen 1690 QNALLNAKESRLPEIVLERAKLLWQTGDELNALSVLQEILSKN 1732 (2382)
T ss_pred HHHHHhhhhcccchHHHHHHHHHHhhccHHHHHHHHHHHHHhh
Confidence 8877666311123344445577788999999999999999743
No 318
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=91.98 E-value=6.6 Score=32.90 Aligned_cols=47 Identities=9% Similarity=-0.055 Sum_probs=35.5
Q ss_pred HHHHHHHHHhCCCCchHHHhHHHHHHHcCCChHHHHHHHccCCCCCe
Q 007808 120 EELHCLVLKNGFRANIFVGTALIELYSTGKAIEAAYKVFGEMDERNV 166 (589)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~ 166 (589)
.+..+.+.+.+++|+...+..+++.+.+.|++..-.+++.--.-+|.
T Consensus 14 lEYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~qllq~~Vi~DS 60 (167)
T PF07035_consen 14 LEYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQLLQYHVIPDS 60 (167)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHhhcccCCc
Confidence 34555666778899999999999999999998888777765443433
No 319
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=91.91 E-value=0.14 Score=29.14 Aligned_cols=26 Identities=15% Similarity=0.247 Sum_probs=23.4
Q ss_pred chHHHHHHHhhcCChHHHHHHHHHhh
Q 007808 500 NFVMLSNIYGDLGRWKDVARIKVAMR 525 (589)
Q Consensus 500 ~~~~l~~~~~~~g~~~~A~~~~~~~~ 525 (589)
++..++.++.+.|++++|.+.++++.
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~ 27 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLI 27 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 46788999999999999999999986
No 320
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=91.85 E-value=0.19 Score=28.94 Aligned_cols=27 Identities=19% Similarity=0.335 Sum_probs=24.6
Q ss_pred cchHHHHHHHhhcCChHHHHHHHHHhh
Q 007808 499 ANFVMLSNIYGDLGRWKDVARIKVAMR 525 (589)
Q Consensus 499 ~~~~~l~~~~~~~g~~~~A~~~~~~~~ 525 (589)
.+|..++.+|...|++++|.+.+++..
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~ 28 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKAL 28 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 367899999999999999999999985
No 321
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=91.73 E-value=0.36 Score=29.29 Aligned_cols=27 Identities=30% Similarity=0.156 Sum_probs=15.2
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHc
Q 007808 466 IWANLLGSCRVYKNVELAELALERLTE 492 (589)
Q Consensus 466 ~~~~l~~~~~~~g~~~~A~~~~~~~~~ 492 (589)
+++.+...|...|++++|+.+++++++
T Consensus 4 ~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 4 ALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 445555556666666666666666554
No 322
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=91.69 E-value=3.5 Score=40.10 Aligned_cols=83 Identities=11% Similarity=-0.014 Sum_probs=35.2
Q ss_pred HhcCCHHHHHHHHhhCC--CCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHccCCCCCcchHHHHHHHhhcCChHHHHHH
Q 007808 443 ARAGRLAEAVDFVKRMP--IEADAVIWANLLGSCRVYKNVELAELALERLTELEPKNPANFVMLSNIYGDLGRWKDVARI 520 (589)
Q Consensus 443 ~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~ 520 (589)
...|+++.+...+.... +.....+..+++......|++++|....+.++...-.+++.....+..-...|-++++...
T Consensus 334 ~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r~~~a~s~a~~~l~~eie~~ei~~iaa~sa~~l~~~d~~~~~ 413 (831)
T PRK15180 334 SHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLARWREALSTAEMMLSNEIEDEEVLTVAAGSADALQLFDKSYHY 413 (831)
T ss_pred HHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchhhHHHHHHHHHHHhccccCChhheeeecccHHHHhHHHHHHHH
Confidence 34444444444444331 2223334444444444444444444444444443333333333333333334444444444
Q ss_pred HHHhh
Q 007808 521 KVAMR 525 (589)
Q Consensus 521 ~~~~~ 525 (589)
++++.
T Consensus 414 wk~~~ 418 (831)
T PRK15180 414 WKRVL 418 (831)
T ss_pred HHHHh
Confidence 44443
No 323
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=91.66 E-value=0.42 Score=41.66 Aligned_cols=86 Identities=14% Similarity=0.113 Sum_probs=64.2
Q ss_pred HHhccCcHHHHHHHHHHhHHhcCCCCChH-HHHHHHHHHHhcCCHHHHHHHHhhC-CCCCCHHHHHHHH-HHHhcCCCHH
Q 007808 405 ACTHMGLVEEGLSYFQSMAMDYSIVPQIE-HYGCMVDLLARAGRLAEAVDFVKRM-PIEADAVIWANLL-GSCRVYKNVE 481 (589)
Q Consensus 405 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~-~~~~~~g~~~ 481 (589)
.|.....++.|+..|.+.+ .+.|+.. -|..=+-.+.+..+++.+..--.+. .+.|+...-...+ .++.....++
T Consensus 19 k~f~~k~y~~ai~~y~raI---~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~~ 95 (284)
T KOG4642|consen 19 KCFIPKRYDDAIDCYSRAI---CINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGYD 95 (284)
T ss_pred cccchhhhchHHHHHHHHH---hcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhcccc
Confidence 4666778999999887776 5568764 4556677888899999887655544 6778766554444 6678888999
Q ss_pred HHHHHHHHHHcc
Q 007808 482 LAELALERLTEL 493 (589)
Q Consensus 482 ~A~~~~~~~~~~ 493 (589)
+|+..+.++..+
T Consensus 96 eaI~~Lqra~sl 107 (284)
T KOG4642|consen 96 EAIKVLQRAYSL 107 (284)
T ss_pred HHHHHHHHHHHH
Confidence 999999999663
No 324
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=91.60 E-value=7 Score=35.05 Aligned_cols=181 Identities=9% Similarity=0.032 Sum_probs=110.7
Q ss_pred CChHHHHHHHhhCCC----C---CcchHHHHHHHHHhCCChHHHHHHHHHHHH---CCCC--CCHhHHHHHHHHHhccCc
Q 007808 344 GIIENAVDVFNSMDT----K---DLITWNTIISGLAMHGRGAGALSLFHEMKN---AGEM--PDGITFIGILCACTHMGL 411 (589)
Q Consensus 344 g~~~~A~~~~~~~~~----~---~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~---~~~~--p~~~~~~~l~~~~~~~g~ 411 (589)
.++++|+.-|+++.+ . .......++..+.+.+++++.++.+.+|.. +.+. -+..+.++++...+...+
T Consensus 41 ~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS~~ 120 (440)
T KOG1464|consen 41 DEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTSKN 120 (440)
T ss_pred cCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhhhh
Confidence 356666666665542 1 223445577788888888888888888753 1121 244567777776666666
Q ss_pred HHHHHHHHHHhHHhcCCCCC----hHHHHHHHHHHHhcCCHHHHHHHHhhCC-----------CCC---CHHHHHHHHHH
Q 007808 412 VEEGLSYFQSMAMDYSIVPQ----IEHYGCMVDLLARAGRLAEAVDFVKRMP-----------IEA---DAVIWANLLGS 473 (589)
Q Consensus 412 ~~~A~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~-----------~~p---~~~~~~~l~~~ 473 (589)
.+--.++|+.-+....-..+ ..+-..|...|...|.+.+-.++++++. .+. -...|..-++.
T Consensus 121 m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQm 200 (440)
T KOG1464|consen 121 MDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQM 200 (440)
T ss_pred hHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhhh
Confidence 65555555443221111112 2233457788888888888888887761 000 12456666688
Q ss_pred HhcCCCHHHHHHHHHHHHccCCC--CCcch----HHHHHHHhhcCChHHHHHHHHHh
Q 007808 474 CRVYKNVELAELALERLTELEPK--NPANF----VMLSNIYGDLGRWKDVARIKVAM 524 (589)
Q Consensus 474 ~~~~g~~~~A~~~~~~~~~~~p~--~~~~~----~~l~~~~~~~g~~~~A~~~~~~~ 524 (589)
|..+.+-.+-..+|++++.+... +|... .+=+.+..+.|+|++|..-|=+.
T Consensus 201 YT~qKnNKkLK~lYeqalhiKSAIPHPlImGvIRECGGKMHlreg~fe~AhTDFFEA 257 (440)
T KOG1464|consen 201 YTEQKNNKKLKALYEQALHIKSAIPHPLIMGVIRECGGKMHLREGEFEKAHTDFFEA 257 (440)
T ss_pred hhhhcccHHHHHHHHHHHHhhccCCchHHHhHHHHcCCccccccchHHHHHhHHHHH
Confidence 88888888888999999876522 23322 23345577889999987754333
No 325
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=91.30 E-value=12 Score=34.75 Aligned_cols=99 Identities=9% Similarity=-0.048 Sum_probs=53.8
Q ss_pred HHHHHHHHHHhcCChh---HHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHhhCCCC---CcchHHHHHHH
Q 007808 297 TIVTVLSACARLGALD---FSKWVHVYAEYNGYQGNVCVGNALIDMYAKCGIIENAVDVFNSMDTK---DLITWNTIISG 370 (589)
Q Consensus 297 ~~~~l~~~~~~~~~~~---~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~ 370 (589)
++..++.++...+..+ +|..+++.+... .+..+.++..-+..+.+.++.+.+.+++.+|... ....+...+..
T Consensus 86 iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e-~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~~~e~~~~~~l~~ 164 (278)
T PF08631_consen 86 ILRLLANAYLEWDTYESVEKALNALRLLESE-YGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSVDHSESNFDSILHH 164 (278)
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHHh-CCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhcccccchHHHHHHH
Confidence 4556666666666544 344455555333 2333444545566666677788888888777632 23445554444
Q ss_pred HHh--CCChHHHHHHHHHHHHCCCCCCH
Q 007808 371 LAM--HGRGAGALSLFHEMKNAGEMPDG 396 (589)
Q Consensus 371 ~~~--~~~~~~A~~~~~~m~~~~~~p~~ 396 (589)
+.. ......|...+..+....+.|..
T Consensus 165 i~~l~~~~~~~a~~~ld~~l~~r~~~~~ 192 (278)
T PF08631_consen 165 IKQLAEKSPELAAFCLDYLLLNRFKSSE 192 (278)
T ss_pred HHHHHhhCcHHHHHHHHHHHHHHhCCCh
Confidence 421 23345566666666654455544
No 326
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=90.87 E-value=0.37 Score=46.65 Aligned_cols=87 Identities=15% Similarity=0.117 Sum_probs=62.4
Q ss_pred HHHHHhcCCHHHHHHHHhhC-CCCCCHHHHH-HHHHHHhcCCCHHHHHHHHHHHHccCCCCCcchHHHHHHHhhcCChHH
Q 007808 439 VDLLARAGRLAEAVDFVKRM-PIEADAVIWA-NLLGSCRVYKNVELAELALERLTELEPKNPANFVMLSNIYGDLGRWKD 516 (589)
Q Consensus 439 ~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~-~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 516 (589)
++.+.+.+.++.|+.++.++ ...|+-..|- .-..++.+.+++..|+.-+.++++++|....+|..-+.++.+.+++.+
T Consensus 11 an~~l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~~~~~ 90 (476)
T KOG0376|consen 11 ANEALKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMALGEFKK 90 (476)
T ss_pred HhhhcccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhHHHHHH
Confidence 34455667777777777776 4566544332 233667778888888888888888888877788888888888888888
Q ss_pred HHHHHHHhh
Q 007808 517 VARIKVAMR 525 (589)
Q Consensus 517 A~~~~~~~~ 525 (589)
|...++...
T Consensus 91 A~~~l~~~~ 99 (476)
T KOG0376|consen 91 ALLDLEKVK 99 (476)
T ss_pred HHHHHHHhh
Confidence 888777765
No 327
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=90.70 E-value=1.3 Score=38.86 Aligned_cols=87 Identities=9% Similarity=-0.038 Sum_probs=65.2
Q ss_pred HHHHHhcCCHHHHHHHHhhC---------CCCCCH-----------HHHHHHHHHHhcCCCHHHHHHHHHHHHccCCCCC
Q 007808 439 VDLLARAGRLAEAVDFVKRM---------PIEADA-----------VIWANLLGSCRVYKNVELAELALERLTELEPKNP 498 (589)
Q Consensus 439 ~~~~~~~g~~~~A~~~~~~~---------~~~p~~-----------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~ 498 (589)
.+-+.+.|++.+|..-|.++ ..+|.. ..+..+.+++...|++-++++....++...|+|.
T Consensus 185 GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~seiL~~~~~nv 264 (329)
T KOG0545|consen 185 GNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEILRHHPGNV 264 (329)
T ss_pred hhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHHhcCCchH
Confidence 34455666666666555543 133422 2333444677788999999999999999999999
Q ss_pred cchHHHHHHHhhcCChHHHHHHHHHhh
Q 007808 499 ANFVMLSNIYGDLGRWKDVARIKVAMR 525 (589)
Q Consensus 499 ~~~~~l~~~~~~~g~~~~A~~~~~~~~ 525 (589)
.+|+.-+.+....=+.++|.+-+.++.
T Consensus 265 KA~frRakAhaa~Wn~~eA~~D~~~vL 291 (329)
T KOG0545|consen 265 KAYFRRAKAHAAVWNEAEAKADLQKVL 291 (329)
T ss_pred HHHHHHHHHHHhhcCHHHHHHHHHHHH
Confidence 999999999998889999999888885
No 328
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=90.51 E-value=2.2 Score=36.85 Aligned_cols=58 Identities=21% Similarity=0.155 Sum_probs=29.8
Q ss_pred HHHHHhcCCHHHHHHHHhhC-CCCC-CHHHHHHHHHHHhcCCCHHHHHHHHHHHHccCCC
Q 007808 439 VDLLARAGRLAEAVDFVKRM-PIEA-DAVIWANLLGSCRVYKNVELAELALERLTELEPK 496 (589)
Q Consensus 439 ~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 496 (589)
+..+.+.+...+|+...+.- .-+| |...-..+++.++-.|++++|..-++-+-++.|.
T Consensus 8 ~seLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~ 67 (273)
T COG4455 8 ISELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQ 67 (273)
T ss_pred HHHHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcc
Confidence 34455555566655554432 3333 2233333445555666666666666665555554
No 329
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=90.14 E-value=0.35 Score=25.89 Aligned_cols=24 Identities=13% Similarity=0.048 Sum_probs=18.2
Q ss_pred cchHHHHHHHhhcCChHHHHHHHH
Q 007808 499 ANFVMLSNIYGDLGRWKDVARIKV 522 (589)
Q Consensus 499 ~~~~~l~~~~~~~g~~~~A~~~~~ 522 (589)
.+...++.++...|++++|..+++
T Consensus 2 ~a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 2 RARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHh
Confidence 356677888888888888887765
No 330
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=90.11 E-value=0.52 Score=42.66 Aligned_cols=50 Identities=18% Similarity=0.174 Sum_probs=36.1
Q ss_pred hcCCCHHHHHHHHHHHHccCCCCCcchHHHHHHHhhcCChHHHHHHHHHh
Q 007808 475 RVYKNVELAELALERLTELEPKNPANFVMLSNIYGDLGRWKDVARIKVAM 524 (589)
Q Consensus 475 ~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 524 (589)
.+.|+.++|..+|+.++.+.|+++.++..++......++.-+|-.+|-+.
T Consensus 127 ~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~A 176 (472)
T KOG3824|consen 127 RKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKA 176 (472)
T ss_pred HhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhhee
Confidence 46677777777777777777777777777777776666666676666555
No 331
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=90.09 E-value=12 Score=36.32 Aligned_cols=63 Identities=13% Similarity=0.133 Sum_probs=51.2
Q ss_pred CHHHHHHHH---HHHhcCCCHHHHHHHHHHHHccCCC-CCcchHHHHHHHh-hcCChHHHHHHHHHhh
Q 007808 463 DAVIWANLL---GSCRVYKNVELAELALERLTELEPK-NPANFVMLSNIYG-DLGRWKDVARIKVAMR 525 (589)
Q Consensus 463 ~~~~~~~l~---~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~-~~g~~~~A~~~~~~~~ 525 (589)
|...|.++. ..+.+.|-+..|.+..+-++.++|. ||-.....++.|. ++++++--+++.+...
T Consensus 99 NR~fflal~r~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~ 166 (360)
T PF04910_consen 99 NRQFFLALFRYIQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPL 166 (360)
T ss_pred chHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHh
Confidence 444554444 6788999999999999999999998 8887777787766 6888988888888764
No 332
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.03 E-value=13 Score=32.81 Aligned_cols=57 Identities=21% Similarity=0.399 Sum_probs=28.6
Q ss_pred HhcCCHHHHHHHHhhCC---CCCCHHHHH---HHH-HH-H-hcCCCHHHHHHHHHHHHccCCCCCc
Q 007808 443 ARAGRLAEAVDFVKRMP---IEADAVIWA---NLL-GS-C-RVYKNVELAELALERLTELEPKNPA 499 (589)
Q Consensus 443 ~~~g~~~~A~~~~~~~~---~~p~~~~~~---~l~-~~-~-~~~g~~~~A~~~~~~~~~~~p~~~~ 499 (589)
...+++.+|+++|++.. ...+..-|. .++ .+ | ....+.-.+...+++-.+++|.-..
T Consensus 165 a~leqY~~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl~~~D~v~a~~ALeky~~~dP~F~d 230 (288)
T KOG1586|consen 165 AQLEQYSKAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLCKADEVNAQRALEKYQELDPAFTD 230 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhHhcccHHHHHHHHHHHHhcCCcccc
Confidence 45566667777766652 111111111 111 11 1 2235666677777777777776443
No 333
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=89.92 E-value=3.4 Score=37.85 Aligned_cols=76 Identities=12% Similarity=0.190 Sum_probs=38.5
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCcHHHHHHHHHHhHH----hcCCCCChHHHHHHH
Q 007808 364 WNTIISGLAMHGRGAGALSLFHEMKNAGEMPDGITFIGILCACTHMGLVEEGLSYFQSMAM----DYSIVPQIEHYGCMV 439 (589)
Q Consensus 364 ~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~~~~~~l~ 439 (589)
+..++..+...|+.+.+...++++.... +-+...|..++.+|.+.|+...|+..|+.+.+ +.|+.|...+...+.
T Consensus 156 l~~lae~~~~~~~~~~~~~~l~~Li~~d-p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~y~ 234 (280)
T COG3629 156 LTKLAEALIACGRADAVIEHLERLIELD-PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRALYE 234 (280)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHHHH
Confidence 3444555555555555555555555531 22455555555555555555555555554422 345555555544433
Q ss_pred H
Q 007808 440 D 440 (589)
Q Consensus 440 ~ 440 (589)
.
T Consensus 235 ~ 235 (280)
T COG3629 235 E 235 (280)
T ss_pred H
Confidence 3
No 334
>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=89.81 E-value=15 Score=33.10 Aligned_cols=123 Identities=7% Similarity=0.050 Sum_probs=88.6
Q ss_pred HHHHHHHHhhC-C-CCCCHHHHHHHHHHHhcCCCHH-HHHHHHHHHHccCCCCCcchHHHHHHHhhcCChHHHHHHHHHh
Q 007808 448 LAEAVDFVKRM-P-IEADAVIWANLLGSCRVYKNVE-LAELALERLTELEPKNPANFVMLSNIYGDLGRWKDVARIKVAM 524 (589)
Q Consensus 448 ~~~A~~~~~~~-~-~~p~~~~~~~l~~~~~~~g~~~-~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 524 (589)
..+=++.++++ . .+.+...|+.--......|++. .-+++.+.++..+..|-.++..--+++...+.|++-+.+..+|
T Consensus 94 L~~El~~l~eI~e~npKNYQvWHHRr~ive~l~d~s~rELef~~~~l~~DaKNYHaWshRqW~~r~F~~~~~EL~y~~~L 173 (318)
T KOG0530|consen 94 LNKELEYLDEIIEDNPKNYQVWHHRRVIVELLGDPSFRELEFTKLMLDDDAKNYHAWSHRQWVLRFFKDYEDELAYADEL 173 (318)
T ss_pred HHHHHHHHHHHHHhCccchhHHHHHHHHHHHhcCcccchHHHHHHHHhccccchhhhHHHHHHHHHHhhHHHHHHHHHHH
Confidence 44445566655 2 3335666665555555566666 7788889999988888889999999999999999999999999
Q ss_pred hhCCCccCCccc-----eeeeCCeeeee-----------ccccCCCchHHHHHHHHHHHH-cc
Q 007808 525 RDTGFKKLPGCS-----SIEVNEVVMLG-----------CLSRELDRKSIVRAEANMIKL-LP 570 (589)
Q Consensus 525 ~~~~~~~~~~~~-----~~~~~~~~~~~-----------~~~~~p~~~~~~~~l~~~~~~-~~ 570 (589)
.+.++..+..+. +..-.+.+... .+.+-|+|.+++..|..++.. .|
T Consensus 174 le~Di~NNSAWN~Ryfvi~~~~~~~~~~~le~El~yt~~~I~~vP~NeSaWnYL~G~l~~d~g 236 (318)
T KOG0530|consen 174 LEEDIRNNSAWNQRYFVITNTKGVISKAELERELNYTKDKILLVPNNESAWNYLKGLLELDSG 236 (318)
T ss_pred HHHhhhccchhheeeEEEEeccCCccHHHHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhccC
Confidence 888888777653 12222332211 678999999999999999975 44
No 335
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=89.45 E-value=4.8 Score=34.64 Aligned_cols=75 Identities=19% Similarity=0.139 Sum_probs=54.4
Q ss_pred hcCCHHHHHHHHhhCCCCC--CHHHHHHHHHHHhcCCCHHHHHHHHHHHHccCCC----CCcchHHHHHHHhhcCChHHH
Q 007808 444 RAGRLAEAVDFVKRMPIEA--DAVIWANLLGSCRVYKNVELAELALERLTELEPK----NPANFVMLSNIYGDLGRWKDV 517 (589)
Q Consensus 444 ~~g~~~~A~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~----~~~~~~~l~~~~~~~g~~~~A 517 (589)
..-.-++|.+.|-.+.-.| +.......+..|....|.++++.++-+++++.+. |++.+..|+.++.+.|+++.|
T Consensus 118 sr~~d~~A~~~fL~~E~~~~l~t~elq~aLAtyY~krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~A 197 (203)
T PF11207_consen 118 SRFGDQEALRRFLQLEGTPELETAELQYALATYYTKRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQA 197 (203)
T ss_pred hccCcHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhh
Confidence 4444567888887774333 2233333445555677999999999999995432 588999999999999999988
Q ss_pred H
Q 007808 518 A 518 (589)
Q Consensus 518 ~ 518 (589)
-
T Consensus 198 Y 198 (203)
T PF11207_consen 198 Y 198 (203)
T ss_pred h
Confidence 5
No 336
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=89.45 E-value=2.8 Score=31.30 Aligned_cols=60 Identities=10% Similarity=0.102 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHH
Q 007808 379 GALSLFHEMKNAGEMPDGITFIGILCACTHMGLVEEGLSYFQSMAMDYSIVPQIEHYGCMVD 440 (589)
Q Consensus 379 ~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~ 440 (589)
+...-+..+....+.|++......+.+|.+.+++..|.++++.+..+.+.. ...|..+++
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~~~--~~~Y~~~lq 87 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCGNK--KEIYPYILQ 87 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTT---TTHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccCh--HHHHHHHHH
Confidence 566667777778889999999999999999999999999999987665533 336776664
No 337
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=89.41 E-value=5.4 Score=34.06 Aligned_cols=62 Identities=19% Similarity=0.180 Sum_probs=40.0
Q ss_pred hHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCcH--HHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 007808 261 SWNGLIGGYANNGLFFEVLDAFKRMLTEGRVFPND--ATIVTVLSACARLGALDFSKWVHVYAEY 323 (589)
Q Consensus 261 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 323 (589)
.+..+...|++.|+.++|++.|.++.+.. ..+.. ..+..+++.....+++..+.....++..
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~-~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~ 101 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYC-TSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAES 101 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhc-CCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 45666777777777777777777776654 33332 2455666666677777777666665544
No 338
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=89.25 E-value=0.53 Score=26.67 Aligned_cols=29 Identities=17% Similarity=0.116 Sum_probs=23.4
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHccCCCC
Q 007808 469 NLLGSCRVYKNVELAELALERLTELEPKN 497 (589)
Q Consensus 469 ~l~~~~~~~g~~~~A~~~~~~~~~~~p~~ 497 (589)
.+..++.+.|++++|.+.|+++++..|++
T Consensus 5 ~~a~~~~~~g~~~~A~~~~~~~~~~~P~s 33 (33)
T PF13174_consen 5 RLARCYYKLGDYDEAIEYFQRLIKRYPDS 33 (33)
T ss_dssp HHHHHHHHHCHHHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHHCcCC
Confidence 45567778889999999999998888863
No 339
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=89.19 E-value=25 Score=34.95 Aligned_cols=155 Identities=14% Similarity=0.131 Sum_probs=79.3
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhHHHHHHHHHH
Q 007808 262 WNGLIGGYANNGLFFEVLDAFKRMLTEGRVFPNDATIVTVLSACARLGALDFSKWVHVYAEYNGYQGNVCVGNALIDMYA 341 (589)
Q Consensus 262 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 341 (589)
.-+++..+.....+.-...+..+|+.-| -+...|..++.+|... ..+.-..+++++.+..+. ++..-..|...|.
T Consensus 69 l~~~~~~f~~n~k~~~veh~c~~~l~~~---e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfn-Dvv~~ReLa~~yE 143 (711)
T COG1747 69 LVTLLTIFGDNHKNQIVEHLCTRVLEYG---ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFN-DVVIGRELADKYE 143 (711)
T ss_pred HHHHHHHhccchHHHHHHHHHHHHHHhc---chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcch-hHHHHHHHHHHHH
Confidence 3445555555555555666666666644 4555566666666555 444555566666555432 2222233333333
Q ss_pred hcCChHHHHHHHhhCCCC------Cc---chHHHHHHHHHhCCChHHHHHHHHHHHH-CCCCCCHhHHHHHHHHHhccCc
Q 007808 342 KCGIIENAVDVFNSMDTK------DL---ITWNTIISGLAMHGRGAGALSLFHEMKN-AGEMPDGITFIGILCACTHMGL 411 (589)
Q Consensus 342 ~~g~~~~A~~~~~~~~~~------~~---~~~~~l~~~~~~~~~~~~A~~~~~~m~~-~~~~p~~~~~~~l~~~~~~~g~ 411 (589)
+ ++.+.+...|.++..+ +. ..|..+...- ..+.+..+.+..+... .|..--...+..+-.-|....+
T Consensus 144 k-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~i--~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys~~eN 220 (711)
T COG1747 144 K-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPELI--GDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYSENEN 220 (711)
T ss_pred H-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHhc--cccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhccccC
Confidence 3 5555555555544311 11 1233332211 2345555555555544 2322333445555566777777
Q ss_pred HHHHHHHHHHhHH
Q 007808 412 VEEGLSYFQSMAM 424 (589)
Q Consensus 412 ~~~A~~~~~~~~~ 424 (589)
+++|++++..+.+
T Consensus 221 ~~eai~Ilk~il~ 233 (711)
T COG1747 221 WTEAIRILKHILE 233 (711)
T ss_pred HHHHHHHHHHHhh
Confidence 8888877776654
No 340
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=89.14 E-value=42 Score=37.48 Aligned_cols=259 Identities=14% Similarity=0.002 Sum_probs=135.3
Q ss_pred HHHHhCCCCChhHHHHHHHHHhcCCChHHHHHHhcccCCCChhhHHHHHHHHHhcCCHH-HHHHHHhhCCCCCchhHHHH
Q 007808 187 CLFELAPERDVILWNTIVSGYIDVRNMIEARKLFDQMPKKDVISWNTMLSGYANNGDVE-ECKRLFEEMPERNVFSWNGL 265 (589)
Q Consensus 187 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~A~~~~~~~~~~~~~~~~~l 265 (589)
.+.+.+.++|+..-...+..+.+.+..+-...+...+..++..+....+.++.+.+... ....+...+..+|...-...
T Consensus 625 ~L~~~L~D~d~~VR~~Av~~L~~~~~~~~~~~L~~aL~D~d~~VR~~Aa~aL~~l~~~~~~~~~L~~~L~~~d~~VR~~A 704 (897)
T PRK13800 625 ELAPYLADPDPGVRRTAVAVLTETTPPGFGPALVAALGDGAAAVRRAAAEGLRELVEVLPPAPALRDHLGSPDPVVRAAA 704 (897)
T ss_pred HHHHHhcCCCHHHHHHHHHHHhhhcchhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCchHHHHHHhcCCCHHHHHHH
Confidence 44444556666666666666666665443344444444455555555555554442211 11112222233455444444
Q ss_pred HHHHHhCCChHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCC
Q 007808 266 IGGYANNGLFFEVLDAFKRMLTEGRVFPNDATIVTVLSACARLGALDFSKWVHVYAEYNGYQGNVCVGNALIDMYAKCGI 345 (589)
Q Consensus 266 ~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 345 (589)
+..+...+..+ .. .+-.+++ .+|...-...+.++.+.+..+. +..+. ..++..+-...+.++...+.
T Consensus 705 ~~aL~~~~~~~-~~-~l~~~L~----D~d~~VR~~Av~aL~~~~~~~~----l~~~l---~D~~~~VR~~aa~aL~~~~~ 771 (897)
T PRK13800 705 LDVLRALRAGD-AA-LFAAALG----DPDHRVRIEAVRALVSVDDVES----VAGAA---TDENREVRIAVAKGLATLGA 771 (897)
T ss_pred HHHHHhhccCC-HH-HHHHHhc----CCCHHHHHHHHHHHhcccCcHH----HHHHh---cCCCHHHHHHHHHHHHHhcc
Confidence 55554433211 11 2222332 2444444555555555544322 11111 24456666666667766665
Q ss_pred hHH-HHH-HHhhCCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCcHHHHHHHHHHhH
Q 007808 346 IEN-AVD-VFNSMDTKDLITWNTIISGLAMHGRGAGALSLFHEMKNAGEMPDGITFIGILCACTHMGLVEEGLSYFQSMA 423 (589)
Q Consensus 346 ~~~-A~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 423 (589)
.+. +.. +..-+..++...-...+.++...|....+...+..+.. .++...-...+.++...+.. ++...+..+.
T Consensus 772 ~~~~~~~~L~~ll~D~d~~VR~aA~~aLg~~g~~~~~~~~l~~aL~---d~d~~VR~~Aa~aL~~l~~~-~a~~~L~~~L 847 (897)
T PRK13800 772 GGAPAGDAVRALTGDPDPLVRAAALAALAELGCPPDDVAAATAALR---ASAWQVRQGAARALAGAAAD-VAVPALVEAL 847 (897)
T ss_pred ccchhHHHHHHHhcCCCHHHHHHHHHHHHhcCCcchhHHHHHHHhc---CCChHHHHHHHHHHHhcccc-chHHHHHHHh
Confidence 432 223 33334567777778888888888876655555555554 45655666667777776653 4555555554
Q ss_pred HhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCCHHH
Q 007808 424 MDYSIVPQIEHYGCMVDLLARAGRLAEAVDFVKRMPIEADAVI 466 (589)
Q Consensus 424 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~ 466 (589)
. .|+...-...+.++.+.+....+...+..+..++|...
T Consensus 848 ~----D~~~~VR~~A~~aL~~~~~~~~a~~~L~~al~D~d~~V 886 (897)
T PRK13800 848 T----DPHLDVRKAAVLALTRWPGDPAARDALTTALTDSDADV 886 (897)
T ss_pred c----CCCHHHHHHHHHHHhccCCCHHHHHHHHHHHhCCCHHH
Confidence 4 36666666677777775444566666666543555543
No 341
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=89.07 E-value=2.4 Score=38.83 Aligned_cols=48 Identities=13% Similarity=0.074 Sum_probs=25.5
Q ss_pred ChHHHHHHHHHHHHhCCCCchHHHhHHHHHHHcCCChHHHHHHHccCC
Q 007808 115 ALREGEELHCLVLKNGFRANIFVGTALIELYSTGKAIEAAYKVFGEMD 162 (589)
Q Consensus 115 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 162 (589)
++++++.++..=+.-|+-||.++++.+|+.+.+.+++.+|.++.-.|.
T Consensus 115 ~pq~~i~~l~npIqYGiF~dqf~~c~l~D~flk~~n~~~aa~vvt~~~ 162 (418)
T KOG4570|consen 115 DPQKAIYTLVNPIQYGIFPDQFTFCLLMDSFLKKENYKDAASVVTEVM 162 (418)
T ss_pred ChHHHHHHHhCcchhccccchhhHHHHHHHHHhcccHHHHHHHHHHHH
Confidence 444555555555555555555555555555555555555555544443
No 342
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=88.71 E-value=19 Score=33.81 Aligned_cols=64 Identities=14% Similarity=0.164 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHHCCCCCCHh-HH-HHHHHHHhccCc--HHHHHHHHHHhHHhcCCCCChHHHHHHHHHH
Q 007808 378 AGALSLFHEMKNAGEMPDGI-TF-IGILCACTHMGL--VEEGLSYFQSMAMDYSIVPQIEHYGCMVDLL 442 (589)
Q Consensus 378 ~~A~~~~~~m~~~~~~p~~~-~~-~~l~~~~~~~g~--~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~ 442 (589)
+.+..+|+.+.+.|+..+.. .+ ..++..+..... ..++.++++.+. +.++++....|..++-.-
T Consensus 160 ~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~-~~~~kik~~~yp~lGlLa 227 (297)
T PF13170_consen 160 ERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALK-KNGVKIKYMHYPTLGLLA 227 (297)
T ss_pred HHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHH-HcCCccccccccHHHHHH
Confidence 45677888888877776432 33 333333322222 346777777774 448888877777655433
No 343
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=88.41 E-value=4.3 Score=29.99 Aligned_cols=63 Identities=11% Similarity=0.144 Sum_probs=48.7
Q ss_pred ChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHH
Q 007808 376 RGAGALSLFHEMKNAGEMPDGITFIGILCACTHMGLVEEGLSYFQSMAMDYSIVPQIEHYGCMVD 440 (589)
Q Consensus 376 ~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~ 440 (589)
+.-++.+-++.+....+.|++....+.+++|.+.+++..|.++++.+..+.+. +...|..+++
T Consensus 22 D~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~~~--~~~~y~~~lq 84 (103)
T cd00923 22 DGWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKCGA--HKEIYPYILQ 84 (103)
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccC--chhhHHHHHH
Confidence 34456677777778888999999999999999999999999999988654433 4446666554
No 344
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=88.29 E-value=0.94 Score=39.32 Aligned_cols=53 Identities=17% Similarity=0.134 Sum_probs=48.3
Q ss_pred HHhcCCCHHHHHHHHHHHHccCCCCCcchHHHHHHHhhcCChHHHHHHHHHhh
Q 007808 473 SCRVYKNVELAELALERLTELEPKNPANFVMLSNIYGDLGRWKDVARIKVAMR 525 (589)
Q Consensus 473 ~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 525 (589)
...+.++.+.|.+.|.+++++-|.....|..++..-.++|+++.|.+.|++..
T Consensus 4 ~~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L 56 (287)
T COG4976 4 MLAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVL 56 (287)
T ss_pred hhcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHH
Confidence 34578899999999999999999999999999999999999999999999886
No 345
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=87.98 E-value=11 Score=38.11 Aligned_cols=149 Identities=17% Similarity=0.114 Sum_probs=72.6
Q ss_pred cCChHHHHHHHhhCCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCcHHHHHHHHHHh
Q 007808 343 CGIIENAVDVFNSMDTKDLITWNTIISGLAMHGRGAGALSLFHEMKNAGEMPDGITFIGILCACTHMGLVEEGLSYFQSM 422 (589)
Q Consensus 343 ~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 422 (589)
.|+++.|..++..+.++ ..+.++.-+.++|-.++|+++- ..|+. -|. ...+.|+++.|.++..+.
T Consensus 599 rrd~~~a~~vLp~I~k~---~rt~va~Fle~~g~~e~AL~~s-------~D~d~-rFe----lal~lgrl~iA~~la~e~ 663 (794)
T KOG0276|consen 599 RRDLEVADGVLPTIPKE---IRTKVAHFLESQGMKEQALELS-------TDPDQ-RFE----LALKLGRLDIAFDLAVEA 663 (794)
T ss_pred hccccccccccccCchh---hhhhHHhHhhhccchHhhhhcC-------CChhh-hhh----hhhhcCcHHHHHHHHHhh
Confidence 45555555544444421 2233444445555555554431 12221 121 123456666666665444
Q ss_pred HHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHccCCCCCcchH
Q 007808 423 AMDYSIVPQIEHYGCMVDLLARAGRLAEAVDFVKRMPIEADAVIWANLLGSCRVYKNVELAELALERLTELEPKNPANFV 502 (589)
Q Consensus 423 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ 502 (589)
.+..-|..|.++..+.|++..|.+.|.+.. -|..|+-.+...|+-+.-..+-..+.+....|
T Consensus 664 -------~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~------d~~~LlLl~t~~g~~~~l~~la~~~~~~g~~N----- 725 (794)
T KOG0276|consen 664 -------NSEVKWRQLGDAALSAGELPLASECFLRAR------DLGSLLLLYTSSGNAEGLAVLASLAKKQGKNN----- 725 (794)
T ss_pred -------cchHHHHHHHHHHhhcccchhHHHHHHhhc------chhhhhhhhhhcCChhHHHHHHHHHHhhcccc-----
Confidence 234456677777777777777777766653 13334444445555443333333333332222
Q ss_pred HHHHHHhhcCChHHHHHHHHHh
Q 007808 503 MLSNIYGDLGRWKDVARIKVAM 524 (589)
Q Consensus 503 ~l~~~~~~~g~~~~A~~~~~~~ 524 (589)
..-.+|...|+++++.+++.+-
T Consensus 726 ~AF~~~~l~g~~~~C~~lLi~t 747 (794)
T KOG0276|consen 726 LAFLAYFLSGDYEECLELLIST 747 (794)
T ss_pred hHHHHHHHcCCHHHHHHHHHhc
Confidence 2223455566666666655443
No 346
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=87.95 E-value=1.2 Score=28.85 Aligned_cols=32 Identities=25% Similarity=0.157 Sum_probs=25.5
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHccCCCCCcc
Q 007808 469 NLLGSCRVYKNVELAELALERLTELEPKNPAN 500 (589)
Q Consensus 469 ~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 500 (589)
.+.-++.+.|++++|.+..+.+++++|+|..+
T Consensus 6 ~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa 37 (53)
T PF14853_consen 6 YLAIGHYKLGEYEKARRYCDALLEIEPDNRQA 37 (53)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHH
Confidence 35567889999999999999999999987643
No 347
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=87.90 E-value=1.4 Score=43.73 Aligned_cols=102 Identities=16% Similarity=0.114 Sum_probs=76.9
Q ss_pred hccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHhhC-C-CCCCHHHHHHHHHHHhcCCCHHHHH
Q 007808 407 THMGLVEEGLSYFQSMAMDYSIVPQIEHYGCMVDLLARAGRLAEAVDFVKRM-P-IEADAVIWANLLGSCRVYKNVELAE 484 (589)
Q Consensus 407 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~-~~p~~~~~~~l~~~~~~~g~~~~A~ 484 (589)
...|+...|...+..+........++ ....|.+.+.+.|...+|-.++.+. . ....+.++..+.+++....+++.|+
T Consensus 618 r~~gn~~~a~~cl~~a~~~~p~~~~v-~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~~a~ 696 (886)
T KOG4507|consen 618 RAVGNSTFAIACLQRALNLAPLQQDV-PLVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNISGAL 696 (886)
T ss_pred eecCCcHHHHHHHHHHhccChhhhcc-cHHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhHHHH
Confidence 45688999999888775432222222 3445777888888888998887765 2 2345567777889999999999999
Q ss_pred HHHHHHHccCCCCCcchHHHHHHHh
Q 007808 485 LALERLTELEPKNPANFVMLSNIYG 509 (589)
Q Consensus 485 ~~~~~~~~~~p~~~~~~~~l~~~~~ 509 (589)
+.++.+..++|+++.+-..|..+-+
T Consensus 697 ~~~~~a~~~~~~~~~~~~~l~~i~c 721 (886)
T KOG4507|consen 697 EAFRQALKLTTKCPECENSLKLIRC 721 (886)
T ss_pred HHHHHHHhcCCCChhhHHHHHHHHH
Confidence 9999999999999988888777655
No 348
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=87.88 E-value=18 Score=31.59 Aligned_cols=178 Identities=12% Similarity=-0.004 Sum_probs=101.1
Q ss_pred cCChhHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHhhCCCCCcc-hHHHHHH--HHHhCCChHHHHHHH
Q 007808 308 LGALDFSKWVHVYAEYNGYQGNVCVGNALIDMYAKCGIIENAVDVFNSMDTKDLI-TWNTIIS--GLAMHGRGAGALSLF 384 (589)
Q Consensus 308 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~l~~--~~~~~~~~~~A~~~~ 384 (589)
.|-+..|..=|.+..... |.-+.+||-|.-.+...|+++.|.+.|+...+-|+. -|..+=. ++.-.|++.-|.+-+
T Consensus 78 lGL~~LAR~DftQaLai~-P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~YY~gR~~LAq~d~ 156 (297)
T COG4785 78 LGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRYKLAQDDL 156 (297)
T ss_pred hhHHHHHhhhhhhhhhcC-CCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceeeeecCchHhhHHHH
Confidence 344444444444444432 345678998988899999999999999988866553 2222222 233468898888877
Q ss_pred HHHHHCCCCCCH--hHHHHHHHHHhccCcHHHHHHHH-HHhHHhcCCCCChHHHHHHHH-HHHhcCCHHHHHHHHhhCCC
Q 007808 385 HEMKNAGEMPDG--ITFIGILCACTHMGLVEEGLSYF-QSMAMDYSIVPQIEHYGCMVD-LLARAGRLAEAVDFVKRMPI 460 (589)
Q Consensus 385 ~~m~~~~~~p~~--~~~~~l~~~~~~~g~~~~A~~~~-~~~~~~~~~~~~~~~~~~l~~-~~~~~g~~~~A~~~~~~~~~ 460 (589)
.+.-+.. +.|+ ..|..+. ...-++.+|..-+ ++. + + .|..-|...+- .|...=..+.+.+-...-..
T Consensus 157 ~~fYQ~D-~~DPfR~LWLYl~---E~k~dP~~A~tnL~qR~-~--~--~d~e~WG~~iV~~yLgkiS~e~l~~~~~a~a~ 227 (297)
T COG4785 157 LAFYQDD-PNDPFRSLWLYLN---EQKLDPKQAKTNLKQRA-E--K--SDKEQWGWNIVEFYLGKISEETLMERLKADAT 227 (297)
T ss_pred HHHHhcC-CCChHHHHHHHHH---HhhCCHHHHHHHHHHHH-H--h--ccHhhhhHHHHHHHHhhccHHHHHHHHHhhcc
Confidence 7766642 1122 2232222 2334566665433 333 2 2 44445554333 33222222233332222211
Q ss_pred CC------CHHHHHHHHHHHhcCCCHHHHHHHHHHHHccCC
Q 007808 461 EA------DAVIWANLLGSCRVYKNVELAELALERLTELEP 495 (589)
Q Consensus 461 ~p------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p 495 (589)
+. -..||-.+..-+...|+.++|..+|+-++..+-
T Consensus 228 ~n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaiannV 268 (297)
T COG4785 228 DNTSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVANNV 268 (297)
T ss_pred chHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhH
Confidence 11 134566677888899999999999999987553
No 349
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=87.70 E-value=0.8 Score=27.69 Aligned_cols=27 Identities=19% Similarity=0.321 Sum_probs=23.5
Q ss_pred cchHHHHHHHhhcCChHHHHHHHHHhh
Q 007808 499 ANFVMLSNIYGDLGRWKDVARIKVAMR 525 (589)
Q Consensus 499 ~~~~~l~~~~~~~g~~~~A~~~~~~~~ 525 (589)
.++..|+.+|...|++++|+.++++..
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al 29 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEAL 29 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHH
Confidence 367899999999999999999999885
No 350
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=87.50 E-value=1.1 Score=24.61 Aligned_cols=30 Identities=23% Similarity=0.164 Sum_probs=16.6
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHccCCC
Q 007808 467 WANLLGSCRVYKNVELAELALERLTELEPK 496 (589)
Q Consensus 467 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 496 (589)
+..+...+...|+++.|...+++++++.|.
T Consensus 4 ~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~ 33 (34)
T smart00028 4 LYNLGNAYLKLGDYDEALEYYEKALELDPN 33 (34)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHccCCC
Confidence 334445555556666666666666555553
No 351
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=87.16 E-value=34 Score=34.04 Aligned_cols=66 Identities=17% Similarity=0.096 Sum_probs=34.1
Q ss_pred CcccHHHHHHHHHcCCChhHHHHHHHHhhhCCCCCCcccHHHHHHHHhccC-ChHHHHHHHHHHHHhC
Q 007808 64 NVVSWNAMFNGYAQNEFHRTVVVLFTQMKKLDAMPNCFTFPIVLKSCVKIN-ALREGEELHCLVLKNG 130 (589)
Q Consensus 64 ~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~~ 130 (589)
|+..|..-+.-+-+.+.+.+.-.+|.+|.... +.++..|..........+ +.+.|..+|...++.+
T Consensus 104 D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~H-p~~~dLWI~aA~wefe~n~ni~saRalflrgLR~n 170 (568)
T KOG2396|consen 104 DVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKH-PNNPDLWIYAAKWEFEINLNIESARALFLRGLRFN 170 (568)
T ss_pred CHHHHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCchhHHhhhhhHHhhccchHHHHHHHHHHhhcC
Confidence 55556666665555555666666666665542 223333333322222222 2666666666665543
No 352
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=86.83 E-value=17 Score=30.39 Aligned_cols=122 Identities=15% Similarity=0.104 Sum_probs=72.8
Q ss_pred HHhCCChHHHHHHHHHHHHCCCCCCHh-HHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHH--HHHHHHhcCC
Q 007808 371 LAMHGRGAGALSLFHEMKNAGEMPDGI-TFIGILCACTHMGLVEEGLSYFQSMAMDYSIVPQIEHYGC--MVDLLARAGR 447 (589)
Q Consensus 371 ~~~~~~~~~A~~~~~~m~~~~~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~--l~~~~~~~g~ 447 (589)
+.+.+..++|+.-|..+.+.|...-+. ..........+.|+...|...|.++-....++.-..-... -...+...|.
T Consensus 68 lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gs 147 (221)
T COG4649 68 LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGS 147 (221)
T ss_pred HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhcccc
Confidence 345677788888888888765433221 1222334456778888888888888654322211111111 1234567788
Q ss_pred HHHHHHHHhhCC--CCCC-HHHHHHHHHHHhcCCCHHHHHHHHHHHHc
Q 007808 448 LAEAVDFVKRMP--IEAD-AVIWANLLGSCRVYKNVELAELALERLTE 492 (589)
Q Consensus 448 ~~~A~~~~~~~~--~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 492 (589)
+++...-.+.+. ..|- ...-..|.-+-.+.|++..|...|.++..
T Consensus 148 y~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 148 YDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred HHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 888777777663 2232 22334455566688888888888888776
No 353
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=86.61 E-value=4 Score=30.13 Aligned_cols=63 Identities=10% Similarity=0.089 Sum_probs=46.7
Q ss_pred ChhHHHHHHHHhhhCCCCCCcccHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchHHHhHHHH
Q 007808 80 FHRTVVVLFTQMKKLDAMPNCFTFPIVLKSCVKINALREGEELHCLVLKNGFRANIFVGTALIE 143 (589)
Q Consensus 80 ~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 143 (589)
+.-++.+-++.+...+..|++....+.+++|.|.+|+..|.++++-..... ..+...|..+++
T Consensus 22 D~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~-~~~~~~y~~~lq 84 (103)
T cd00923 22 DGWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKC-GAHKEIYPYILQ 84 (103)
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHc-cCchhhHHHHHH
Confidence 444566777788878889999999999999999999999999998776432 223445655543
No 354
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=85.86 E-value=6.4 Score=36.18 Aligned_cols=101 Identities=17% Similarity=0.143 Sum_probs=70.7
Q ss_pred cCCCCChhHHHHHHHHHHhcCChHHHHHHHhhCCC-CCc-----chHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHh
Q 007808 324 NGYQGNVCVGNALIDMYAKCGIIENAVDVFNSMDT-KDL-----ITWNTIISGLAMHGRGAGALSLFHEMKNAGEMPDGI 397 (589)
Q Consensus 324 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~-----~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~ 397 (589)
.|.+.+..+...++..-....+++.++..+-++.. |+. .+-.+.+..+ -.-++++++.++..=+.-|+-||.+
T Consensus 58 ~g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~~~irll-lky~pq~~i~~l~npIqYGiF~dqf 136 (418)
T KOG4570|consen 58 RGLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIHTWIRLL-LKYDPQKAIYTLVNPIQYGIFPDQF 136 (418)
T ss_pred cCCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHHHHHHHH-HccChHHHHHHHhCcchhccccchh
Confidence 34455555566666666667788888887776653 211 1112223322 2346778999988888899999999
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHhHHh
Q 007808 398 TFIGILCACTHMGLVEEGLSYFQSMAMD 425 (589)
Q Consensus 398 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 425 (589)
+++.+++.+.+.+++.+|.++...+...
T Consensus 137 ~~c~l~D~flk~~n~~~aa~vvt~~~~q 164 (418)
T KOG4570|consen 137 TFCLLMDSFLKKENYKDAASVVTEVMMQ 164 (418)
T ss_pred hHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 9999999999999999999888777553
No 355
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=85.27 E-value=54 Score=34.66 Aligned_cols=70 Identities=9% Similarity=-0.066 Sum_probs=44.1
Q ss_pred ccHHHHHHHHHcCCChhHHHHHHHHhhhCCCCCCcccHHHHHHHHhccCC-------hHHHHHHHHHHHHhCCCCchH
Q 007808 66 VSWNAMFNGYAQNEFHRTVVVLFTQMKKLDAMPNCFTFPIVLKSCVKINA-------LREGEELHCLVLKNGFRANIF 136 (589)
Q Consensus 66 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~-------~~~a~~~~~~~~~~~~~~~~~ 136 (589)
..--++|--|.+.|++++|.++....... .......|...+..+....+ -+....-|++..+...+.|++
T Consensus 112 ~p~Wa~Iyy~LR~G~~~~A~~~~~~~~~~-~~~~~~~f~~~l~~~~~s~~~~l~~~~~~~l~~ey~~~~r~~~~~Dpy 188 (613)
T PF04097_consen 112 DPIWALIYYCLRCGDYDEALEVANENRNQ-FQKIERSFPTYLKAYASSPDRRLPPELRDKLKLEYNQRIRNSTDGDPY 188 (613)
T ss_dssp EEHHHHHHHHHTTT-HHHHHHHHHHTGGG-S-TTTTHHHHHHHHCTTTTSS---TCCCHHHHHHHHHHTTT-TTS-HH
T ss_pred CccHHHHHHHHhcCCHHHHHHHHHHhhhh-hcchhHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhcCCCCCChH
Confidence 33447788889999999999999666543 45566778888888876533 234555666665554333443
No 356
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=84.90 E-value=0.82 Score=42.28 Aligned_cols=85 Identities=14% Similarity=0.216 Sum_probs=44.0
Q ss_pred hcCCHHHHHHHHhhC-CCCCC-HHHHHHHHHHHhcCCCHHHHHHHHHHHHccCCCCCcchHHHHHHHhhcCChHHHHHHH
Q 007808 444 RAGRLAEAVDFVKRM-PIEAD-AVIWANLLGSCRVYKNVELAELALERLTELEPKNPANFVMLSNIYGDLGRWKDVARIK 521 (589)
Q Consensus 444 ~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 521 (589)
..|.+++|++.+... ...|. ...|..-.+++.+.+....|++-+..+++++|+...-|-.-+.+..-.|+|++|.+.+
T Consensus 126 n~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~aa~dl 205 (377)
T KOG1308|consen 126 NDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWEEAAHDL 205 (377)
T ss_pred cCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchHHHHHHH
Confidence 344455555555544 23332 2233333345555555555666666666666655555555555555555665555555
Q ss_pred HHhhhCC
Q 007808 522 VAMRDTG 528 (589)
Q Consensus 522 ~~~~~~~ 528 (589)
....+.+
T Consensus 206 ~~a~kld 212 (377)
T KOG1308|consen 206 ALACKLD 212 (377)
T ss_pred HHHHhcc
Confidence 5554433
No 357
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=84.89 E-value=4.1 Score=30.45 Aligned_cols=61 Identities=8% Similarity=0.087 Sum_probs=41.2
Q ss_pred hHHHHHHHHhhhCCCCCCcccHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchHHHhHHHH
Q 007808 82 RTVVVLFTQMKKLDAMPNCFTFPIVLKSCVKINALREGEELHCLVLKNGFRANIFVGTALIE 143 (589)
Q Consensus 82 ~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 143 (589)
-+..+-++.+...++.|++....+.+++|.|.+++..|.++++-+...- .+....|..+++
T Consensus 27 we~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~-~~~~~~Y~~~lq 87 (108)
T PF02284_consen 27 WELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKC-GNKKEIYPYILQ 87 (108)
T ss_dssp HHHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHT-TT-TTHHHHHHH
T ss_pred HHHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHc-cChHHHHHHHHH
Confidence 3556667777777888899999999999999999999999988876642 333336665554
No 358
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=84.69 E-value=60 Score=34.63 Aligned_cols=180 Identities=11% Similarity=0.037 Sum_probs=120.5
Q ss_pred ccchHHHHHHHHccCChhHHHHHhhcCCCCCcccHHHH----HHHHHcCCChhHHHHHHHHhhhCCCCCCcccHHHHHHH
Q 007808 34 DYITPRIITACAQLKQMTYARKMFDKITDQNVVSWNAM----FNGYAQNEFHRTVVVLFTQMKKLDAMPNCFTFPIVLKS 109 (589)
Q Consensus 34 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l----l~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~ 109 (589)
......-+..+.+..-++.|..+-+.-.. +..+-..+ .+-+.+.|++++|...|-+-... +.| ..++.-
T Consensus 334 ek~le~kL~iL~kK~ly~~Ai~LAk~~~~-d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~-----s~Vi~k 406 (933)
T KOG2114|consen 334 EKDLETKLDILFKKNLYKVAINLAKSQHL-DEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEP-----SEVIKK 406 (933)
T ss_pred eccHHHHHHHHHHhhhHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CCh-----HHHHHH
Confidence 34455677888888888888888765433 22222233 33456789999999988776532 233 234555
Q ss_pred HhccCChHHHHHHHHHHHHhCCCCchHHHhHHHHHHHcCCChHHHHHHHccCCCCCee-hHHHHHHHHHhCCCHHHHHHH
Q 007808 110 CVKINALREGEELHCLVLKNGFRANIFVGTALIELYSTGKAIEAAYKVFGEMDERNVV-VWTSMINGYISCGDIVSARCL 188 (589)
Q Consensus 110 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~a~~~ 188 (589)
+....+...-..+++.+.+.|+. +...-+.|+.+|.+.++.++-.++.+...+.... -....+..+.+.+-.++|..+
T Consensus 407 fLdaq~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~efI~~~~~g~~~fd~e~al~Ilr~snyl~~a~~L 485 (933)
T KOG2114|consen 407 FLDAQRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTEFISKCDKGEWFFDVETALEILRKSNYLDEAELL 485 (933)
T ss_pred hcCHHHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHHHHhcCCCcceeeeHHHHHHHHHHhChHHHHHHH
Confidence 65666666777788888888865 4455577999999999999999988887732211 245667777777777777766
Q ss_pred HHhCCCCChhHHHHHHHHHhcCCChHHHHHHhcccCC
Q 007808 189 FELAPERDVILWNTIVSGYIDVRNMIEARKLFDQMPK 225 (589)
Q Consensus 189 ~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 225 (589)
-..... .......+ +-..+++++|.+.+..+.-
T Consensus 486 A~k~~~-he~vl~il---le~~~ny~eAl~yi~slp~ 518 (933)
T KOG2114|consen 486 ATKFKK-HEWVLDIL---LEDLHNYEEALRYISSLPI 518 (933)
T ss_pred HHHhcc-CHHHHHHH---HHHhcCHHHHHHHHhcCCH
Confidence 655443 23332222 3467889999999988763
No 359
>PRK11619 lytic murein transglycosylase; Provisional
Probab=84.65 E-value=59 Score=34.54 Aligned_cols=435 Identities=7% Similarity=-0.077 Sum_probs=197.4
Q ss_pred HHcCCChhHHHHHHHHhhhCCCCCCcccHHHHHHHHhccCChHHHHHHHHHHHHhCC-CCchHHHhHHHHHHHcCCChHH
Q 007808 75 YAQNEFHRTVVVLFTQMKKLDAMPNCFTFPIVLKSCVKINALREGEELHCLVLKNGF-RANIFVGTALIELYSTGKAIEA 153 (589)
Q Consensus 75 ~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~ 153 (589)
..+.|++..+.++...+...-. ..-..|..+...+. ....+ ++-..+.+..- +.....-......+.+.+++..
T Consensus 43 a~~~g~~~~~~~~~~~l~d~pL-~~yl~y~~L~~~l~-~~~~~---ev~~Fl~~~~~~P~~~~Lr~~~l~~La~~~~w~~ 117 (644)
T PRK11619 43 AWDNRQMDVVEQLMPTLKDYPL-YPYLEYRQLTQDLM-NQPAV---QVTNFIRANPTLPPARSLQSRFVNELARREDWRG 117 (644)
T ss_pred HHHCCCHHHHHHHHHhccCCCc-HhHHHHHHHHhccc-cCCHH---HHHHHHHHCCCCchHHHHHHHHHHHHHHccCHHH
Confidence 4567788888777777642211 11222333322211 11233 33333333322 2233344445556667788888
Q ss_pred HHHHHccCCCCCeehHHHHHHHHHhCCCHHHHHHHHHhCC---CCChhHHHHHHHHHhcCCChHHHHHHhcccC----CC
Q 007808 154 AYKVFGEMDERNVVVWTSMINGYISCGDIVSARCLFELAP---ERDVILWNTIVSGYIDVRNMIEARKLFDQMP----KK 226 (589)
Q Consensus 154 A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~----~~ 226 (589)
..+++..- ..+.........+....|+.++|....+.+= ...+.....++..+.+.|...... ++.++. ..
T Consensus 118 ~~~~~~~~-p~~~~~~c~~~~A~~~~G~~~~A~~~a~~lW~~g~~~p~~cd~l~~~~~~~g~lt~~d-~w~R~~~al~~~ 195 (644)
T PRK11619 118 LLAFSPEK-PKPVEARCNYYYAKWATGQQQEAWQGAKELWLTGKSLPNACDKLFSVWQQSGKQDPLA-YLERIRLAMKAG 195 (644)
T ss_pred HHHhcCCC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCChHHHHHHHHHHHcCCCCHHH-HHHHHHHHHHCC
Confidence 88744332 3455555667777888888776665555431 224566677777766555433221 111111 11
Q ss_pred ChhhH---------------HHHHHHHHhcCCHHHHHHHHhhCCCCCchhHHHHHHHH--HhCCChHHHHHHHHHHHHcC
Q 007808 227 DVISW---------------NTMLSGYANNGDVEECKRLFEEMPERNVFSWNGLIGGY--ANNGLFFEVLDAFKRMLTEG 289 (589)
Q Consensus 227 ~~~~~---------------~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~--~~~g~~~~A~~~~~~~~~~~ 289 (589)
+...- ..++..+ .+...+...+.... ++...-..++.++ ....+.+.|..++.......
T Consensus 196 ~~~lA~~l~~~l~~~~~~~a~a~~al~---~~p~~~~~~~~~~~-~~~~~~~~~~~~l~Rlar~d~~~A~~~~~~~~~~~ 271 (644)
T PRK11619 196 NTGLVTYLAKQLPADYQTIASALIKLQ---NDPNTVETFARTTG-PTDFTRQMAAVAFASVARQDAENARLMIPSLVRAQ 271 (644)
T ss_pred CHHHHHHHHHhcChhHHHHHHHHHHHH---HCHHHHHHHhhccC-CChhhHHHHHHHHHHHHHhCHHHHHHHHHHHHHhc
Confidence 11111 1111111 11222222222211 1111111111111 12344566777776654443
Q ss_pred CCCCcHH--HHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHhhCCCC---CcchH
Q 007808 290 RVFPNDA--TIVTVLSACARLGALDFSKWVHVYAEYNGYQGNVCVGNALIDMYAKCGIIENAVDVFNSMDTK---DLITW 364 (589)
Q Consensus 290 ~~~p~~~--~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~ 364 (589)
...+... ....+.......+..+.+...+....... .+......-+..-.+.++++.+...+..|... ...-.
T Consensus 272 ~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~~--~~~~~~e~r~r~Al~~~dw~~~~~~i~~L~~~~~~~~rw~ 349 (644)
T PRK11619 272 KLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMRS--QSTSLLERRVRMALGTGDRRGLNTWLARLPMEAKEKDEWR 349 (644)
T ss_pred CCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhccccc--CCcHHHHHHHHHHHHccCHHHHHHHHHhcCHhhccCHhhH
Confidence 2222221 12222222222211334444444332221 23334444455555677777777777776521 22223
Q ss_pred HHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCcHHHH-HHHHHHhHHhcCCCCChHHHHHHHHHHH
Q 007808 365 NTIISGLAMHGRGAGALSLFHEMKNAGEMPDGITFIGILCACTHMGLVEEG-LSYFQSMAMDYSIVPQIEHYGCMVDLLA 443 (589)
Q Consensus 365 ~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A-~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 443 (589)
.=+..++...|+.++|...|+++.. ..+ -|..|... +.|..-.- ......-.. .+..++ -..-+..+.
T Consensus 350 YW~aRa~~~~g~~~~A~~~~~~~a~---~~~--fYG~LAa~--~Lg~~~~~~~~~~~~~~~--~~~~~~--~~~ra~~L~ 418 (644)
T PRK11619 350 YWQADLLLEQGRKAEAEEILRQLMQ---QRG--FYPMVAAQ--RLGEEYPLKIDKAPKPDS--ALTQGP--EMARVRELM 418 (644)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHhc---CCC--cHHHHHHH--HcCCCCCCCCCCCCchhh--hhccCh--HHHHHHHHH
Confidence 3345555567777777777777632 111 22222211 11211000 000000000 000000 112345667
Q ss_pred hcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHccC---CCCCcchHHHHHHHhhcCChHHHHHH
Q 007808 444 RAGRLAEAVDFVKRMPIEADAVIWANLLGSCRVYKNVELAELALERLTELE---PKNPANFVMLSNIYGDLGRWKDVARI 520 (589)
Q Consensus 444 ~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---p~~~~~~~~l~~~~~~~g~~~~A~~~ 520 (589)
..|+..+|...+..+....+......+.....+.|.++.++....+....+ -.-|..|...+..+.+.-..+.++-.
T Consensus 419 ~~g~~~~a~~ew~~~~~~~~~~~~~~la~~A~~~g~~~~ai~~~~~~~~~~~~~~rfp~~~~~~~~~~a~~~~v~~~lv~ 498 (644)
T PRK11619 419 YWNMDNTARSEWANLVASRSKTEQAQLARYAFNQQWWDLSVQATIAGKLWDHLEERFPLAWNDEFRRYTSGKGIPQSYAM 498 (644)
T ss_pred HCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCHHHHHHHHhhchhHHHHHHhCCcchHHHHHHHHHHcCCCHHHHH
Confidence 788888888888776333455555556566678888888887776543311 11233566666666665566655543
Q ss_pred HHHhhhCCCccCC
Q 007808 521 KVAMRDTGFKKLP 533 (589)
Q Consensus 521 ~~~~~~~~~~~~~ 533 (589)
----.++++.|..
T Consensus 499 ai~rqES~f~p~a 511 (644)
T PRK11619 499 AIARQESAWNPKA 511 (644)
T ss_pred HHHHHhcCCCCCC
Confidence 2222355666653
No 360
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=84.53 E-value=9.1 Score=35.60 Aligned_cols=125 Identities=14% Similarity=0.046 Sum_probs=91.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhhC--C--CCCC--HHHHHHHHHHHhcCCCHHHHHHHHHHHHccCCCCCcchHHHHHH
Q 007808 434 HYGCMVDLLARAGRLAEAVDFVKRM--P--IEAD--AVIWANLLGSCRVYKNVELAELALERLTELEPKNPANFVMLSNI 507 (589)
Q Consensus 434 ~~~~l~~~~~~~g~~~~A~~~~~~~--~--~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 507 (589)
+|.-=++-|.+.+++..|...|.+. . -.|| ...|+.-..+-...|++..|+.-..+++.++|.+..+|..=+.+
T Consensus 83 n~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~Akc 162 (390)
T KOG0551|consen 83 NYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIRGAKC 162 (390)
T ss_pred HHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhhhHH
Confidence 3444467788999999999999876 1 2343 45566666666788999999999999999999999999999999
Q ss_pred HhhcCChHHHHHHHHHhhhCCCccCCccceeeeCCeeeeeccccCCCchHHHHHHHHHHHH
Q 007808 508 YGDLGRWKDVARIKVAMRDTGFKKLPGCSSIEVNEVVMLGCLSRELDRKSIVRAEANMIKL 568 (589)
Q Consensus 508 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~ 568 (589)
+....++++|....++...-..+ .+.+...+-..+|+++.++.....+-.+
T Consensus 163 ~~eLe~~~~a~nw~ee~~~~d~e----------~K~~~~l~~l~~k~~~~~L~~er~~rK~ 213 (390)
T KOG0551|consen 163 LLELERFAEAVNWCEEGLQIDDE----------AKKAIELRNLIHKNDKLKLIEERDVRKK 213 (390)
T ss_pred HHHHHHHHHHHHHHhhhhhhhHH----------HHHHHHHHhhcCcchHHHHHHHHHHHHH
Confidence 99999999999887766311110 0111111223689999999888777543
No 361
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=83.74 E-value=1.8 Score=23.68 Aligned_cols=27 Identities=19% Similarity=0.231 Sum_probs=24.3
Q ss_pred cchHHHHHHHhhcCChHHHHHHHHHhh
Q 007808 499 ANFVMLSNIYGDLGRWKDVARIKVAMR 525 (589)
Q Consensus 499 ~~~~~l~~~~~~~g~~~~A~~~~~~~~ 525 (589)
..+..++.++...|++++|...+++..
T Consensus 2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~ 28 (34)
T smart00028 2 EALYNLGNAYLKLGDYDEALEYYEKAL 28 (34)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 467889999999999999999998875
No 362
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=83.70 E-value=7.2 Score=31.68 Aligned_cols=58 Identities=12% Similarity=0.191 Sum_probs=38.7
Q ss_pred hHHHHHHHH---HhccCcHHHHHHHHHHhHHhcCCCCC---hHHHHHHHHHHHhcCCHHHHHHHHhhCC
Q 007808 397 ITFIGILCA---CTHMGLVEEGLSYFQSMAMDYSIVPQ---IEHYGCMVDLLARAGRLAEAVDFVKRMP 459 (589)
Q Consensus 397 ~~~~~l~~~---~~~~g~~~~A~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 459 (589)
...+.|+.. -...++.+++..++..+. .+.|+ ..++ -...+...|++++|+++|++..
T Consensus 8 ~iv~gLi~~~~~aL~~~d~~D~e~lLdALr---vLrP~~~e~d~~--dg~l~i~rg~w~eA~rvlr~l~ 71 (153)
T TIGR02561 8 RLLGGLIEVLMYALRSADPYDAQAMLDALR---VLRPNLKELDMF--DGWLLIARGNYDEAARILRELL 71 (153)
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHH---HhCCCccccchh--HHHHHHHcCCHHHHHHHHHhhh
Confidence 334444443 345788888888888885 44555 3333 3455778899999999998884
No 363
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=83.45 E-value=19 Score=36.56 Aligned_cols=44 Identities=18% Similarity=0.183 Sum_probs=20.6
Q ss_pred hcCCHHHHHHHHhhCCCCCchhHHHHHHHHHhCCChHHHHHHHHHH
Q 007808 240 NNGDVEECKRLFEEMPERNVFSWNGLIGGYANNGLFFEVLDAFKRM 285 (589)
Q Consensus 240 ~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 285 (589)
+.|+++.|.++..+.. +..-|..|.++....|++..|.+-|...
T Consensus 649 ~lgrl~iA~~la~e~~--s~~Kw~~Lg~~al~~~~l~lA~EC~~~a 692 (794)
T KOG0276|consen 649 KLGRLDIAFDLAVEAN--SEVKWRQLGDAALSAGELPLASECFLRA 692 (794)
T ss_pred hcCcHHHHHHHHHhhc--chHHHHHHHHHHhhcccchhHHHHHHhh
Confidence 4445555444433322 2334555555555555555555544443
No 364
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=82.10 E-value=69 Score=33.42 Aligned_cols=243 Identities=11% Similarity=0.044 Sum_probs=121.7
Q ss_pred hCCChHHHHHHHHHHHH-------cCCCCCcHHHHHHHHHHHHhcC-----ChhHHHHHHHHHHHcCCCCChhHHHHHHH
Q 007808 271 NNGLFFEVLDAFKRMLT-------EGRVFPNDATIVTVLSACARLG-----ALDFSKWVHVYAEYNGYQGNVCVGNALID 338 (589)
Q Consensus 271 ~~g~~~~A~~~~~~~~~-------~~~~~p~~~~~~~l~~~~~~~~-----~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 338 (589)
...+.+.|+..|+.+.+ .+ . ......+..+|.+.. +.+.|..++.+..+.|.+ +.... +..
T Consensus 261 ~~~d~e~a~~~l~~aa~~~~~~a~~~-~---~~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~g~~-~a~~~--lg~ 333 (552)
T KOG1550|consen 261 VTQDLESAIEYLKLAAESFKKAATKG-L---PPAQYGLGRLYLQGLGVEKIDYEKALKLYTKAAELGNP-DAQYL--LGV 333 (552)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHhhc-C---CccccHHHHHHhcCCCCccccHHHHHHHHHHHHhcCCc-hHHHH--HHH
Confidence 44556666666666655 33 1 112333444444422 445566666666666532 22222 222
Q ss_pred HHHhc---CChHHHHHHHhhCCCC-CcchHHHHHHHHH----hCCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccC
Q 007808 339 MYAKC---GIIENAVDVFNSMDTK-DLITWNTIISGLA----MHGRGAGALSLFHEMKNAGEMPDGITFIGILCACTHMG 410 (589)
Q Consensus 339 ~~~~~---g~~~~A~~~~~~~~~~-~~~~~~~l~~~~~----~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g 410 (589)
.|... .+...|.+.|...... .+..+..+..+|. ...+.+.|..++++..+.| .|...--...+..+.. +
T Consensus 334 ~~~~g~~~~d~~~A~~yy~~Aa~~G~~~A~~~la~~y~~G~gv~r~~~~A~~~~k~aA~~g-~~~A~~~~~~~~~~g~-~ 411 (552)
T KOG1550|consen 334 LYETGTKERDYRRAFEYYSLAAKAGHILAIYRLALCYELGLGVERNLELAFAYYKKAAEKG-NPSAAYLLGAFYEYGV-G 411 (552)
T ss_pred HHHcCCccccHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHcc-ChhhHHHHHHHHHHcc-c
Confidence 22222 2455666666665533 2233333333222 2346677888888887776 3332222223333333 5
Q ss_pred cHHHHHHHHHHhHHhcCCCCChHHHHHHHHH---HHh----cCCHHHHHHHHhhCCCCCCHHHHHHHHHHHhc----CCC
Q 007808 411 LVEEGLSYFQSMAMDYSIVPQIEHYGCMVDL---LAR----AGRLAEAVDFVKRMPIEADAVIWANLLGSCRV----YKN 479 (589)
Q Consensus 411 ~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~---~~~----~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~----~g~ 479 (589)
.++.+.-.+..+.. .+.+--...-..+... ... ..+.+.+...+.+....-+......+...|.. ..+
T Consensus 412 ~~~~~~~~~~~~a~-~g~~~~q~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~g~~~a~~~lgd~y~~g~g~~~d 490 (552)
T KOG1550|consen 412 RYDTALALYLYLAE-LGYEVAQSNAAYLLDQSEEDLFSRGVISTLERAFSLYSRAAAQGNADAILKLGDYYYYGLGTGRD 490 (552)
T ss_pred cccHHHHHHHHHHH-hhhhHHhhHHHHHHHhccccccccccccchhHHHHHHHHHHhccCHHHHhhhcceeeecCCCCCC
Confidence 55555544444422 1221111100011111 111 22455666667666444455555555554432 346
Q ss_pred HHHHHHHHHHHHccCCCCCcchHHHHHHHhhc-C--ChHHHHHHHHHhhh
Q 007808 480 VELAELALERLTELEPKNPANFVMLSNIYGDL-G--RWKDVARIKVAMRD 526 (589)
Q Consensus 480 ~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~-g--~~~~A~~~~~~~~~ 526 (589)
++.|...|.++.... .....+++.++... | .+..|.+++++...
T Consensus 491 ~~~a~~~y~~a~~~~---~~~~~nlg~~~e~g~g~~~~~~a~~~~~~~~~ 537 (552)
T KOG1550|consen 491 PEKAAAQYARASEQG---AQALFNLGYMHEHGEGIKVLHLAKRYYDQASE 537 (552)
T ss_pred hHHHHHHHHHHHHhh---hHHHhhhhhHHhcCcCcchhHHHHHHHHHHHh
Confidence 888888888887766 66777888887652 2 26788888887753
No 365
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=81.70 E-value=12 Score=36.63 Aligned_cols=89 Identities=18% Similarity=0.203 Sum_probs=41.6
Q ss_pred HhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHhhC-CC-CCCHHHHHHHHHHHhcCCCHHHH
Q 007808 406 CTHMGLVEEGLSYFQSMAMDYSIVPQIEHYGCMVDLLARAGRLAEAVDFVKRM-PI-EADAVIWANLLGSCRVYKNVELA 483 (589)
Q Consensus 406 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~~~g~~~~A 483 (589)
+...|+++.+.+.+...-. -+-....+..+++....+.|++++|...-+-| +. -.+..............|-++++
T Consensus 333 ~~~lg~ye~~~~~~s~~~~--~~~s~~~~~~~~~r~~~~l~r~~~a~s~a~~~l~~eie~~ei~~iaa~sa~~l~~~d~~ 410 (831)
T PRK15180 333 FSHLGYYEQAYQDISDVEK--IIGTTDSTLRCRLRSLHGLARWREALSTAEMMLSNEIEDEEVLTVAAGSADALQLFDKS 410 (831)
T ss_pred HHHhhhHHHHHHHhhchhh--hhcCCchHHHHHHHhhhchhhHHHHHHHHHHHhccccCChhheeeecccHHHHhHHHHH
Confidence 3455666666655544422 22233444555555555666666666555544 10 01112111112222344555666
Q ss_pred HHHHHHHHccCCC
Q 007808 484 ELALERLTELEPK 496 (589)
Q Consensus 484 ~~~~~~~~~~~p~ 496 (589)
...|++++.++|.
T Consensus 411 ~~~wk~~~~~~~~ 423 (831)
T PRK15180 411 YHYWKRVLLLNPE 423 (831)
T ss_pred HHHHHHHhccCCh
Confidence 6666666665543
No 366
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=81.08 E-value=1e+02 Score=34.61 Aligned_cols=254 Identities=11% Similarity=-0.028 Sum_probs=142.7
Q ss_pred HHHHccCCCCCeehHHHHHHHHHhCCCHHHHHHHHHhCCCCChhHHHHHHHHHhcCCChH-HHHHHhcccCCCChhhHHH
Q 007808 155 YKVFGEMDERNVVVWTSMINGYISCGDIVSARCLFELAPERDVILWNTIVSGYIDVRNMI-EARKLFDQMPKKDVISWNT 233 (589)
Q Consensus 155 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~-~a~~~~~~~~~~~~~~~~~ 233 (589)
..+...+..++.......+..+.+.+..+....+.+.+.++|...-...+.++.+.+... ....+...+..+|..+...
T Consensus 624 ~~L~~~L~D~d~~VR~~Av~~L~~~~~~~~~~~L~~aL~D~d~~VR~~Aa~aL~~l~~~~~~~~~L~~~L~~~d~~VR~~ 703 (897)
T PRK13800 624 AELAPYLADPDPGVRRTAVAVLTETTPPGFGPALVAALGDGAAAVRRAAAEGLRELVEVLPPAPALRDHLGSPDPVVRAA 703 (897)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHhhhcchhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCchHHHHHHhcCCCHHHHHH
Confidence 344444556677777777777777766554444444555555555555555554443211 1112222223366666666
Q ss_pred HHHHHHhcCCHHHHHHHHhhCCCCCchhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHhcCChhH
Q 007808 234 MLSGYANNGDVEECKRLFEEMPERNVFSWNGLIGGYANNGLFFEVLDAFKRMLTEGRVFPNDATIVTVLSACARLGALDF 313 (589)
Q Consensus 234 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~ 313 (589)
.+..+...+.-+ ...+...+..+|...-...+.++...+..+. +..... .++...-.....++...+..+.
T Consensus 704 A~~aL~~~~~~~-~~~l~~~L~D~d~~VR~~Av~aL~~~~~~~~----l~~~l~----D~~~~VR~~aa~aL~~~~~~~~ 774 (897)
T PRK13800 704 ALDVLRALRAGD-AALFAAALGDPDHRVRIEAVRALVSVDDVES----VAGAAT----DENREVRIAVAKGLATLGAGGA 774 (897)
T ss_pred HHHHHHhhccCC-HHHHHHHhcCCCHHHHHHHHHHHhcccCcHH----HHHHhc----CCCHHHHHHHHHHHHHhccccc
Confidence 666665543211 2234445555666665566666666554322 222222 3555555666666666665432
Q ss_pred -HHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHH-HHHhhCCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHHCC
Q 007808 314 -SKWVHVYAEYNGYQGNVCVGNALIDMYAKCGIIENAV-DVFNSMDTKDLITWNTIISGLAMHGRGAGALSLFHEMKNAG 391 (589)
Q Consensus 314 -a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~ 391 (589)
+...+..+.+ .++..+-...+.++...|..+.+. .+...+..++..+-...+.++...+. +++...+..+.+
T Consensus 775 ~~~~~L~~ll~---D~d~~VR~aA~~aLg~~g~~~~~~~~l~~aL~d~d~~VR~~Aa~aL~~l~~-~~a~~~L~~~L~-- 848 (897)
T PRK13800 775 PAGDAVRALTG---DPDPLVRAAALAALAELGCPPDDVAAATAALRASAWQVRQGAARALAGAAA-DVAVPALVEALT-- 848 (897)
T ss_pred hhHHHHHHHhc---CCCHHHHHHHHHHHHhcCCcchhHHHHHHHhcCCChHHHHHHHHHHHhccc-cchHHHHHHHhc--
Confidence 2333444333 346777778888888888765553 34445556676667777777777765 456666666664
Q ss_pred CCCCHhHHHHHHHHHhccCcHHHHHHHHHHhHH
Q 007808 392 EMPDGITFIGILCACTHMGLVEEGLSYFQSMAM 424 (589)
Q Consensus 392 ~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 424 (589)
.|+...-...+.++.+.+....+...+..+..
T Consensus 849 -D~~~~VR~~A~~aL~~~~~~~~a~~~L~~al~ 880 (897)
T PRK13800 849 -DPHLDVRKAAVLALTRWPGDPAARDALTTALT 880 (897)
T ss_pred -CCCHHHHHHHHHHHhccCCCHHHHHHHHHHHh
Confidence 66776666777777775434456666666654
No 367
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=80.85 E-value=8.1 Score=34.16 Aligned_cols=63 Identities=17% Similarity=0.145 Sum_probs=42.1
Q ss_pred HHHHHHHHHhcCCCHH-------HHHHHHHHHHccC--CC----CCcchHHHHHHHhhcCChHHHHHHHHHhhhCC
Q 007808 466 IWANLLGSCRVYKNVE-------LAELALERLTELE--PK----NPANFVMLSNIYGDLGRWKDVARIKVAMRDTG 528 (589)
Q Consensus 466 ~~~~l~~~~~~~g~~~-------~A~~~~~~~~~~~--p~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 528 (589)
.+..+.+.|...|+.+ .|.+.|+++.+.. |. .......+|.+..+.|++++|.+.+.++...+
T Consensus 120 l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~ 195 (214)
T PF09986_consen 120 LCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSK 195 (214)
T ss_pred HHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCC
Confidence 3444556677777744 4555555555433 22 23467788999999999999999999996433
No 368
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=80.36 E-value=3.7 Score=21.81 Aligned_cols=20 Identities=20% Similarity=0.300 Sum_probs=10.2
Q ss_pred HHHHHHHhcCCHHHHHHHHh
Q 007808 437 CMVDLLARAGRLAEAVDFVK 456 (589)
Q Consensus 437 ~l~~~~~~~g~~~~A~~~~~ 456 (589)
.+...+...|++++|..+++
T Consensus 6 ~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 6 ALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHcCCHHHHHHHHh
Confidence 34455555555555555443
No 369
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=80.21 E-value=3 Score=29.44 Aligned_cols=46 Identities=9% Similarity=0.053 Sum_probs=34.8
Q ss_pred hcCCCHHHHHHHHHHHHccCCCCCc---chHHHHHHHhhcCChHHHHHH
Q 007808 475 RVYKNVELAELALERLTELEPKNPA---NFVMLSNIYGDLGRWKDVARI 520 (589)
Q Consensus 475 ~~~g~~~~A~~~~~~~~~~~p~~~~---~~~~l~~~~~~~g~~~~A~~~ 520 (589)
..+.+.++|+..|+++++..++.+. ++-.|+.+|+..|++++++++
T Consensus 17 Y~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~f 65 (80)
T PF10579_consen 17 YHQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAF 65 (80)
T ss_pred hccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3777888999999999987766554 344556678888998888875
No 370
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=80.20 E-value=85 Score=33.27 Aligned_cols=48 Identities=15% Similarity=0.133 Sum_probs=30.8
Q ss_pred CCCHHHHHHHHHHHHccC---CCCC-cch-----HHHHHHHhhcCChHHHHHHHHHh
Q 007808 477 YKNVELAELALERLTELE---PKNP-ANF-----VMLSNIYGDLGRWKDVARIKVAM 524 (589)
Q Consensus 477 ~g~~~~A~~~~~~~~~~~---p~~~-~~~-----~~l~~~~~~~g~~~~A~~~~~~~ 524 (589)
.|+..+..+....+..+. |+.. ..| ..+.+.+...|+.++|.....+.
T Consensus 547 ~~~~~e~~~~s~~a~~~A~k~~d~~~~LW~~v~~~~l~~~~~~~G~~~ka~~~~~~~ 603 (608)
T PF10345_consen 547 EGDVGEQAKKSARAFQLAKKSSDYSDQLWHLVASGMLADSYEVQGDRDKAEEARQQL 603 (608)
T ss_pred cCCHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHH
Confidence 778877777766666533 2212 233 24445588889999998887665
No 371
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=79.91 E-value=67 Score=31.93 Aligned_cols=102 Identities=13% Similarity=0.003 Sum_probs=65.2
Q ss_pred HHHhcCChHHHHHHHhhCC---CC---------CcchHHHHHHHHHhCCChHHHHHHHHHHHH-------CCCCCCHh--
Q 007808 339 MYAKCGIIENAVDVFNSMD---TK---------DLITWNTIISGLAMHGRGAGALSLFHEMKN-------AGEMPDGI-- 397 (589)
Q Consensus 339 ~~~~~g~~~~A~~~~~~~~---~~---------~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~-------~~~~p~~~-- 397 (589)
.+.-.|++.+|.+++.... .+ .-..||.|...+.+.|.+.-+..+|.+..+ .|++|...
T Consensus 249 ~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~t 328 (696)
T KOG2471|consen 249 LEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFT 328 (696)
T ss_pred HHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCccee
Confidence 3455688888888876543 11 223466776667777777766666666553 45555321
Q ss_pred ---------HHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHH
Q 007808 398 ---------TFIGILCACTHMGLVEEGLSYFQSMAMDYSIVPQIEHYGCMVDLLA 443 (589)
Q Consensus 398 ---------~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 443 (589)
+||.- -.|...|++-.|.+.|.+... -+..++..|..|..+|.
T Consensus 329 ls~nks~eilYNcG-~~~Lh~grPl~AfqCf~~av~--vfh~nPrlWLRlAEcCi 380 (696)
T KOG2471|consen 329 LSQNKSMEILYNCG-LLYLHSGRPLLAFQCFQKAVH--VFHRNPRLWLRLAECCI 380 (696)
T ss_pred hhcccchhhHHhhh-HHHHhcCCcHHHHHHHHHHHH--HHhcCcHHHHHHHHHHH
Confidence 23332 346677888889988888876 44567777888877765
No 372
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=79.58 E-value=36 Score=28.61 Aligned_cols=53 Identities=15% Similarity=0.066 Sum_probs=23.9
Q ss_pred HhCCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCcHHHHHHHHHHhHH
Q 007808 372 AMHGRGAGALSLFHEMKNAGEMPDGITFIGILCACTHMGLVEEGLSYFQSMAM 424 (589)
Q Consensus 372 ~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 424 (589)
..+|-++....-.+.+...+-+.-...-..|.-+-.+.|++..|.+.|..+..
T Consensus 143 vD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 143 VDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred hccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 34455555444444443332222222333444444455555555555555543
No 373
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=79.29 E-value=3.7 Score=25.37 Aligned_cols=26 Identities=12% Similarity=0.253 Sum_probs=22.0
Q ss_pred HHHHHHHhhcCChHHHHHHHHHhhhC
Q 007808 502 VMLSNIYGDLGRWKDVARIKVAMRDT 527 (589)
Q Consensus 502 ~~l~~~~~~~g~~~~A~~~~~~~~~~ 527 (589)
..|+.+|...|+.+.|.++++++...
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl~~ 28 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVIEE 28 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHHHc
Confidence 46889999999999999999998643
No 374
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=78.90 E-value=21 Score=30.87 Aligned_cols=73 Identities=11% Similarity=0.014 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCcHHHHHHHHHHhHHhc--CCCCChHHHHHHHHHHHhcCCHHHH
Q 007808 378 AGALSLFHEMKNAGEMPDGITFIGILCACTHMGLVEEGLSYFQSMAMDY--SIVPQIEHYGCMVDLLARAGRLAEA 451 (589)
Q Consensus 378 ~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~A 451 (589)
+.|...|-++...+.--++.....|+..|. ..+.+++.+++.+...-. +-.+|+..+..|+..|.+.|+++.|
T Consensus 123 ~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~A 197 (203)
T PF11207_consen 123 QEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQA 197 (203)
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhh
Confidence 445555555555443333333333333333 455556665555544321 1134555566666666666665554
No 375
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=78.57 E-value=33 Score=34.75 Aligned_cols=53 Identities=17% Similarity=0.159 Sum_probs=40.2
Q ss_pred HHHhcCCCHHHHHHHHHHHHccCCC-CCcchHHHHHHHh-hcCChHHHHHHHHHh
Q 007808 472 GSCRVYKNVELAELALERLTELEPK-NPANFVMLSNIYG-DLGRWKDVARIKVAM 524 (589)
Q Consensus 472 ~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~-~~g~~~~A~~~~~~~ 524 (589)
..+.+.|-+..|.+..+-+++++|. ||-+...+++.|. ++.+|+--++++++.
T Consensus 350 ~~l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~ 404 (665)
T KOG2422|consen 350 QSLAQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDIYALRAREYQWIIELSNEP 404 (665)
T ss_pred HHHHhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 5566788888888888888888887 7777777777765 566777777776666
No 376
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=78.22 E-value=75 Score=31.51 Aligned_cols=231 Identities=7% Similarity=-0.064 Sum_probs=107.7
Q ss_pred HHHHHcCCChhHHHHHHHHhhhCCCCCCcccHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchHHHhHHHHHHHcCCCh
Q 007808 72 FNGYAQNEFHRTVVVLFTQMKKLDAMPNCFTFPIVLKSCVKINALREGEELHCLVLKNGFRANIFVGTALIELYSTGKAI 151 (589)
Q Consensus 72 l~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 151 (589)
|+++...| ..+++.+-...... ++...+.....++....+......+.+.+ -.++..+.....+++...+..
T Consensus 45 LdgL~~~G--~~a~~~L~~aL~~d--~~~ev~~~aa~al~~~~~~~~~~~L~~~L----~d~~~~vr~aaa~ALg~i~~~ 116 (410)
T TIGR02270 45 VDGLVLAG--KAATELLVSALAEA--DEPGRVACAALALLAQEDALDLRSVLAVL----QAGPEGLCAGIQAALGWLGGR 116 (410)
T ss_pred HHHHHHhh--HhHHHHHHHHHhhC--CChhHHHHHHHHHhccCChHHHHHHHHHh----cCCCHHHHHHHHHHHhcCCch
Confidence 66666666 45666555555332 23333433333333222222122222222 234555666677777766666
Q ss_pred HHHHHHHccCCCCCeehHHHHHHHHHhCCCHHHHHHHHHhCCCCChhHHHHHHHHHhcCCChHHHHHHhcccCCCChhhH
Q 007808 152 EAAYKVFGEMDERNVVVWTSMINGYISCGDIVSARCLFELAPERDVILWNTIVSGYIDVRNMIEARKLFDQMPKKDVISW 231 (589)
Q Consensus 152 ~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 231 (589)
.....+..-+..++.......+.++...+. +....+...+..+|...-...+.++...+..+..-.+..-...+|..+-
T Consensus 117 ~a~~~L~~~L~~~~p~vR~aal~al~~r~~-~~~~~L~~~L~d~d~~Vra~A~raLG~l~~~~a~~~L~~al~d~~~~VR 195 (410)
T TIGR02270 117 QAEPWLEPLLAASEPPGRAIGLAALGAHRH-DPGPALEAALTHEDALVRAAALRALGELPRRLSESTLRLYLRDSDPEVR 195 (410)
T ss_pred HHHHHHHHHhcCCChHHHHHHHHHHHhhcc-ChHHHHHHHhcCCCHHHHHHHHHHHHhhccccchHHHHHHHcCCCHHHH
Confidence 555555555555555554445555544331 1112222222344555555555555555554333333322333566666
Q ss_pred HHHHHHHHhcCCHHHHHHHHhh-CCCCCchhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHhcCC
Q 007808 232 NTMLSGYANNGDVEECKRLFEE-MPERNVFSWNGLIGGYANNGLFFEVLDAFKRMLTEGRVFPNDATIVTVLSACARLGA 310 (589)
Q Consensus 232 ~~l~~~~~~~~~~~~A~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~ 310 (589)
..-+.+....|. ..|...+.. ..+++......+...+... ...++++.+....+.. + +-...+.++.+.|+
T Consensus 196 ~aA~~al~~lG~-~~A~~~l~~~~~~~g~~~~~~l~~~lal~-~~~~a~~~L~~ll~d~----~--vr~~a~~AlG~lg~ 267 (410)
T TIGR02270 196 FAALEAGLLAGS-RLAWGVCRRFQVLEGGPHRQRLLVLLAVA-GGPDAQAWLRELLQAA----A--TRREALRAVGLVGD 267 (410)
T ss_pred HHHHHHHHHcCC-HhHHHHHHHHHhccCccHHHHHHHHHHhC-CchhHHHHHHHHhcCh----h--hHHHHHHHHHHcCC
Confidence 666666666666 444444443 3334433333333322222 2335666555555432 1 33445555555555
Q ss_pred hhHHHHHHH
Q 007808 311 LDFSKWVHV 319 (589)
Q Consensus 311 ~~~a~~~~~ 319 (589)
...+..+..
T Consensus 268 p~av~~L~~ 276 (410)
T TIGR02270 268 VEAAPWCLE 276 (410)
T ss_pred cchHHHHHH
Confidence 554443333
No 377
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=77.66 E-value=0.73 Score=42.59 Aligned_cols=52 Identities=12% Similarity=-0.015 Sum_probs=46.9
Q ss_pred HhcCCCHHHHHHHHHHHHccCCCCCcchHHHHHHHhhcCChHHHHHHHHHhh
Q 007808 474 CRVYKNVELAELALERLTELEPKNPANFVMLSNIYGDLGRWKDVARIKVAMR 525 (589)
Q Consensus 474 ~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 525 (589)
....|.+++|++.+-.+++++|.....|..-+.++.+.+++..|++-+....
T Consensus 124 Aln~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ 175 (377)
T KOG1308|consen 124 ALNDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAI 175 (377)
T ss_pred HhcCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhh
Confidence 3467889999999999999999999999999999999999999999877664
No 378
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=77.19 E-value=28 Score=26.07 Aligned_cols=60 Identities=22% Similarity=0.277 Sum_probs=39.5
Q ss_pred HHHHhcCChHHHHHHHhhCCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHhHHH
Q 007808 338 DMYAKCGIIENAVDVFNSMDTKDLITWNTIISGLAMHGRGAGALSLFHEMKNAGEMPDGITFI 400 (589)
Q Consensus 338 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~ 400 (589)
..+...|++++|..+.+...-||...|-.|-. .+.|-.+++...+.+|..+| .|...+|.
T Consensus 47 sSLmNrG~Yq~Al~l~~~~~~pdlepw~ALce--~rlGl~s~l~~rl~rla~sg-~p~lq~Fa 106 (115)
T TIGR02508 47 SSLMNRGDYQSALQLGNKLCYPDLEPWLALCE--WRLGLGSALESRLNRLAASG-DPRLQTFV 106 (115)
T ss_pred HHHHccchHHHHHHhcCCCCCchHHHHHHHHH--HhhccHHHHHHHHHHHHhCC-CHHHHHHH
Confidence 34566778888888887777777777766543 35566666666777777665 55544443
No 379
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=76.95 E-value=3.9 Score=22.74 Aligned_cols=30 Identities=23% Similarity=0.255 Sum_probs=23.5
Q ss_pred CCHHHHHHHHHHHHccCCCCCcchHHHHHH
Q 007808 478 KNVELAELALERLTELEPKNPANFVMLSNI 507 (589)
Q Consensus 478 g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 507 (589)
|+.+.|..+|++++...|.++..|...+..
T Consensus 1 ~~~~~~r~i~e~~l~~~~~~~~~W~~y~~~ 30 (33)
T smart00386 1 GDIERARKIYERALEKFPKSVELWLKYAEF 30 (33)
T ss_pred CcHHHHHHHHHHHHHHCCCChHHHHHHHHH
Confidence 567888889999998888877777766654
No 380
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=76.60 E-value=29 Score=25.98 Aligned_cols=59 Identities=22% Similarity=0.249 Sum_probs=37.0
Q ss_pred HHHHhcCCHHHHHHHHhhCCCCCchhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCcHHHH
Q 007808 236 SGYANNGDVEECKRLFEEMPERNVFSWNGLIGGYANNGLFFEVLDAFKRMLTEGRVFPNDATI 298 (589)
Q Consensus 236 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~ 298 (589)
..+...|++++|..+.+...-||...|.+|.. -+.|-.++...-+..|..+| .|....|
T Consensus 47 sSLmNrG~Yq~Al~l~~~~~~pdlepw~ALce--~rlGl~s~l~~rl~rla~sg--~p~lq~F 105 (115)
T TIGR02508 47 SSLMNRGDYQSALQLGNKLCYPDLEPWLALCE--WRLGLGSALESRLNRLAASG--DPRLQTF 105 (115)
T ss_pred HHHHccchHHHHHHhcCCCCCchHHHHHHHHH--HhhccHHHHHHHHHHHHhCC--CHHHHHH
Confidence 45566777777777777777777777765543 35566666666666666665 3444333
No 381
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=75.96 E-value=1.2e+02 Score=33.31 Aligned_cols=40 Identities=13% Similarity=0.308 Sum_probs=30.2
Q ss_pred ChhHHHHHhhcCCCCCcccHHHHHHHHHcCCChhHHHHHHHHhhh
Q 007808 49 QMTYARKMFDKITDQNVVSWNAMFNGYAQNEFHRTVVVLFTQMKK 93 (589)
Q Consensus 49 ~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~ 93 (589)
.+++...++.+-. -|..|+..|...|+.++|+++|.....
T Consensus 493 ~vee~e~~L~k~~-----~y~~Li~LY~~kg~h~~AL~ll~~l~d 532 (877)
T KOG2063|consen 493 DVEEIETVLKKSK-----KYRELIELYATKGMHEKALQLLRDLVD 532 (877)
T ss_pred chHHHHHHHHhcc-----cHHHHHHHHHhccchHHHHHHHHHHhc
Confidence 3455555554433 488999999999999999999998875
No 382
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=75.73 E-value=8.9 Score=27.18 Aligned_cols=46 Identities=11% Similarity=0.177 Sum_probs=19.3
Q ss_pred ccCcHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHHhcCCHHHHHH
Q 007808 408 HMGLVEEGLSYFQSMAMDYSIVPQ-IEHYGCMVDLLARAGRLAEAVD 453 (589)
Q Consensus 408 ~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~ 453 (589)
...+.++|+..|+..+++..-.|+ -.++..|+.+|+..|++.++++
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~ 64 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLA 64 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444455555444443222222 1233344445555555544443
No 383
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=75.57 E-value=7.7 Score=34.30 Aligned_cols=94 Identities=12% Similarity=0.095 Sum_probs=60.5
Q ss_pred HhcCCCHHHHHHHHHHHHc----cCCCC---CcchHHHHHHHhhcCChHHHHHHHHHh-------hhCCCccCCccceee
Q 007808 474 CRVYKNVELAELALERLTE----LEPKN---PANFVMLSNIYGDLGRWKDVARIKVAM-------RDTGFKKLPGCSSIE 539 (589)
Q Consensus 474 ~~~~g~~~~A~~~~~~~~~----~~p~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~-------~~~~~~~~~~~~~~~ 539 (589)
+.....+++|++.|.-++- ..+++ ...+..++|+|...|+.+.....++++ ....-.|.
T Consensus 87 ~~~~Rt~~~ai~~YkLAll~~~~~~~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~------- 159 (214)
T PF09986_consen 87 FSGERTLEEAIESYKLALLCAQIKKEKPSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPI------- 159 (214)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCC-------
Confidence 3445567777777766654 12221 346778899999999955544444444 22221110
Q ss_pred eCCeeeeeccccCCCchHHHHHHHHHHHHcccCCCCcchHhhhhhc
Q 007808 540 VNEVVMLGCLSRELDRKSIVRAEANMIKLLPQNNHPLTFIVVIFST 585 (589)
Q Consensus 540 ~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 585 (589)
-.=+...+...+|.++.++|+.++|+++.+.+...
T Consensus 160 -----------~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~ 194 (214)
T PF09986_consen 160 -----------EGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGS 194 (214)
T ss_pred -----------CCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcC
Confidence 11144568888999999999999999999888654
No 384
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=75.55 E-value=33 Score=35.84 Aligned_cols=183 Identities=15% Similarity=0.130 Sum_probs=95.9
Q ss_pred hHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCcHH----------HHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCh
Q 007808 261 SWNGLIGGYANNGLFFEVLDAFKRMLTEGRVFPNDA----------TIVTVLSACARLGALDFSKWVHVYAEYNGYQGNV 330 (589)
Q Consensus 261 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~----------~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 330 (589)
+...++..|....+++..+++.+.+.+. ||.. .|...++--.+.|+-++|..+.-.+.+..-+..+
T Consensus 203 ~V~nlmlSyRDvQdY~amirLVe~Lk~i----P~t~~vve~~nv~f~YaFALNRRNr~GDRakAL~~~l~lve~eg~vap 278 (1226)
T KOG4279|consen 203 TVSNLMLSYRDVQDYDAMIRLVEDLKRI----PDTLKVVETHNVRFHYAFALNRRNRPGDRAKALNTVLPLVEKEGPVAP 278 (1226)
T ss_pred HHHHHHhhhccccchHHHHHHHHHHHhC----cchhhhhccCceEEEeeehhcccCCCccHHHHHHHHHHHHHhcCCCCC
Confidence 4445666677777888888888877653 3321 1222233333456667777766666554433333
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHhhCCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHhH---HHHHHHHHh
Q 007808 331 CVGNALIDMYAKCGIIENAVDVFNSMDTKDLITWNTIISGLAMHGRGAGALSLFHEMKNAGEMPDGIT---FIGILCACT 407 (589)
Q Consensus 331 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~---~~~l~~~~~ 407 (589)
.+| |-+|+ +|+.|- +-+.|...+..+.|.++|++..+ +.|+..+ +..|+.+-.
T Consensus 279 Dm~-------Cl~GR------IYKDmF---------~~S~ytDa~s~~~a~~WyrkaFe--veP~~~sGIN~atLL~aaG 334 (1226)
T KOG4279|consen 279 DMY-------CLCGR------IYKDMF---------IASNYTDAESLNHAIEWYRKAFE--VEPLEYSGINLATLLRAAG 334 (1226)
T ss_pred cee-------eeech------hhhhhh---------hccCCcchhhHHHHHHHHHHHhc--cCchhhccccHHHHHHHhh
Confidence 222 22332 222221 11223344556778888888877 5776543 333333221
Q ss_pred ccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHhcCCCHHHHHHHH
Q 007808 408 HMGLVEEGLSYFQSMAMDYSIVPQIEHYGCMVDLLARAGRLAEAVDFVKRMPIEADAVIWANLLGSCRVYKNVELAELAL 487 (589)
Q Consensus 408 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 487 (589)
..++...++ +.+ | -.|-..+.+.|..++-.++|+-.- .+.+-.-.+++.+|.+..
T Consensus 335 --~~Fens~El-q~I----g--------mkLn~LlgrKG~leklq~YWdV~~----------y~~asVLAnd~~kaiqAa 389 (1226)
T KOG4279|consen 335 --EHFENSLEL-QQI----G--------MKLNSLLGRKGALEKLQEYWDVAT----------YFEASVLANDYQKAIQAA 389 (1226)
T ss_pred --hhccchHHH-HHH----H--------HHHHHHhhccchHHHHHHHHhHHH----------hhhhhhhccCHHHHHHHH
Confidence 112221111 111 1 123345567777777766665331 223333467788888888
Q ss_pred HHHHccCCC
Q 007808 488 ERLTELEPK 496 (589)
Q Consensus 488 ~~~~~~~p~ 496 (589)
+.+.++.|.
T Consensus 390 e~mfKLk~P 398 (1226)
T KOG4279|consen 390 EMMFKLKPP 398 (1226)
T ss_pred HHHhccCCc
Confidence 888888876
No 385
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=74.34 E-value=8 Score=23.94 Aligned_cols=24 Identities=21% Similarity=0.245 Sum_probs=15.0
Q ss_pred HHHHHHhCCChHHHHHHHHHHHHC
Q 007808 367 IISGLAMHGRGAGALSLFHEMKNA 390 (589)
Q Consensus 367 l~~~~~~~~~~~~A~~~~~~m~~~ 390 (589)
+..+|...|+.+.|.+++++....
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl~~ 28 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVIEE 28 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHc
Confidence 455666666666666666666653
No 386
>PRK10941 hypothetical protein; Provisional
Probab=73.71 E-value=19 Score=33.07 Aligned_cols=66 Identities=12% Similarity=0.078 Sum_probs=49.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhC-CCCC-CHHHHHHHHHHHhcCCCHHHHHHHHHHHHccCCCCCcc
Q 007808 435 YGCMVDLLARAGRLAEAVDFVKRM-PIEA-DAVIWANLLGSCRVYKNVELAELALERLTELEPKNPAN 500 (589)
Q Consensus 435 ~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 500 (589)
.+.+-.+|.+.++++.|+.+.+.+ .+.| ++.-+.--.-.|.+.|.+..|..-++..++..|++|.+
T Consensus 184 l~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a 251 (269)
T PRK10941 184 LDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPIS 251 (269)
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhH
Confidence 345667788888888888888887 4455 44556666677888888888888888888888887653
No 387
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=73.54 E-value=13 Score=33.66 Aligned_cols=56 Identities=25% Similarity=0.212 Sum_probs=50.6
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHccCCCCCcchHHHHHHHhhcCChHHHHHHHHHhh
Q 007808 470 LLGSCRVYKNVELAELALERLTELEPKNPANFVMLSNIYGDLGRWKDVARIKVAMR 525 (589)
Q Consensus 470 l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 525 (589)
+-..+.+.++++.|....++.+.++|.++.-+..-+-+|.+.|.+.-|++-++...
T Consensus 187 lk~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~ 242 (269)
T COG2912 187 LKAALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFV 242 (269)
T ss_pred HHHHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHH
Confidence 33678899999999999999999999999999999999999999999999888853
No 388
>PRK12798 chemotaxis protein; Reviewed
Probab=73.14 E-value=97 Score=30.33 Aligned_cols=206 Identities=15% Similarity=0.187 Sum_probs=133.7
Q ss_pred cCChHHHHHHHhhCCC----CCcchHHHHHHHH-HhCCChHHHHHHHHHHHHCCCCCCHh----HHHHHHHHHhccCcHH
Q 007808 343 CGIIENAVDVFNSMDT----KDLITWNTIISGL-AMHGRGAGALSLFHEMKNAGEMPDGI----TFIGILCACTHMGLVE 413 (589)
Q Consensus 343 ~g~~~~A~~~~~~~~~----~~~~~~~~l~~~~-~~~~~~~~A~~~~~~m~~~~~~p~~~----~~~~l~~~~~~~g~~~ 413 (589)
.|+-.+|.+.+..+.. +....|-.|+.+- ....++.+|+++|+...- ..|-.. ...--+....+.|+.+
T Consensus 125 ~Gr~~~a~~~La~i~~~~l~~~lg~~laLv~a~l~~~~dP~~Al~~lD~aRL--laPGTLvEEAALRRsi~la~~~g~~~ 202 (421)
T PRK12798 125 SGRGREARKLLAGVAPEYLPAELGAYLALVQGNLMVATDPATALKLLDQARL--LAPGTLVEEAALRRSLFIAAQLGDAD 202 (421)
T ss_pred cCCHHHHHHHhhcCChhhcCchhhhHHHHHHHHHhcccCHHHHHHHHHHHHH--hCCchHHHHHHHHHhhHHHHhcCcHH
Confidence 6888888888888773 3445677777654 456789999999998876 345332 2333344567889999
Q ss_pred HHHHHHHHhHHhcCCCCChHHHH-HHHHHHHhcC---CHHHHHHHHhhCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHH
Q 007808 414 EGLSYFQSMAMDYSIVPQIEHYG-CMVDLLARAG---RLAEAVDFVKRMPIEADAVIWANLLGSCRVYKNVELAELALER 489 (589)
Q Consensus 414 ~A~~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~g---~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 489 (589)
++..+-....+.+...|=...|. .+...+.+.+ ..+.-..++..|.-.-....|..+...-...|+.+.|.-.-++
T Consensus 203 rf~~la~~Y~rRF~~S~YA~~F~~~F~~~~~~~~d~~~~~~l~~~ls~~d~~~q~~lYL~iAR~Ali~Gk~~lA~~As~~ 282 (421)
T PRK12798 203 KFEALARNYLRRFRHSPYASQFAQRFVDLVVRLDDEIRDARLVEILSFMDPERQRELYLRIARAALIDGKTELARFASER 282 (421)
T ss_pred HHHHHHHHHHHHhccCchHHHHHHHHHHHHHhccccccHHHHHHHHHhcCchhHHHHHHHHHHHHHHcCcHHHHHHHHHH
Confidence 99888877777666555433322 2333444333 4445556666664222356777777888899999999999999
Q ss_pred HHccCCCCCcchHHHHHHHhh-----cCChHHHHHHHHHhhhCCCccCCccceeeeCCeeeeeccccCCCchHHHHHHHH
Q 007808 490 LTELEPKNPANFVMLSNIYGD-----LGRWKDVARIKVAMRDTGFKKLPGCSSIEVNEVVMLGCLSRELDRKSIVRAEAN 564 (589)
Q Consensus 490 ~~~~~p~~~~~~~~l~~~~~~-----~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~ 564 (589)
+..+... ...-...+.+|.. ..+.++|.+.+..+-.. ++.|+|...++.-..
T Consensus 283 A~~L~~~-~~~~~~ra~LY~aaa~v~s~~~~~al~~L~~I~~~----------------------~L~~~Dr~Ll~AA~~ 339 (421)
T PRK12798 283 ALKLADP-DSADAARARLYRGAALVASDDAESALEELSQIDRD----------------------KLSERDRALLEAARS 339 (421)
T ss_pred HHHhccC-CCcchHHHHHHHHHHccCcccHHHHHHHHhcCChh----------------------hCChhhHHHHHHHHH
Confidence 9997643 3344445555543 44677777777766322 466777777766666
Q ss_pred HHHHcccCC
Q 007808 565 MIKLLPQNN 573 (589)
Q Consensus 565 ~~~~~~~~~ 573 (589)
+-....+.+
T Consensus 340 va~~V~~~p 348 (421)
T PRK12798 340 VARQVRRAP 348 (421)
T ss_pred HHHHHhcCc
Confidence 655555554
No 389
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=72.94 E-value=65 Score=31.63 Aligned_cols=53 Identities=11% Similarity=0.018 Sum_probs=35.2
Q ss_pred HHhCCChHHHHHHHHHHHHCCCCCCHh--HHHHHHHHHh--ccCcHHHHHHHHHHhHH
Q 007808 371 LAMHGRGAGALSLFHEMKNAGEMPDGI--TFIGILCACT--HMGLVEEGLSYFQSMAM 424 (589)
Q Consensus 371 ~~~~~~~~~A~~~~~~m~~~~~~p~~~--~~~~l~~~~~--~~g~~~~A~~~~~~~~~ 424 (589)
+...+++..|.++|+.+... ++++.. .+..+..+|. ..-++++|.+.++....
T Consensus 141 l~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~ 197 (379)
T PF09670_consen 141 LFNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLK 197 (379)
T ss_pred HHhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 44678888888888888876 555544 3444445543 44567788888877754
No 390
>KOG0403 consensus Neoplastic transformation suppressor Pdcd4/MA-3, contains MA3 domain [Signal transduction mechanisms]
Probab=72.21 E-value=1e+02 Score=30.27 Aligned_cols=70 Identities=17% Similarity=0.234 Sum_probs=52.1
Q ss_pred HHHHHHHHhcCChHHHHHHHhhCCCC---CcchHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHh
Q 007808 334 NALIDMYAKCGIIENAVDVFNSMDTK---DLITWNTIISGLAMHGRGAGALSLFHEMKNAGEMPDGITFIGILCACT 407 (589)
Q Consensus 334 ~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~ 407 (589)
..|+.-|...|++.+|....+++.-| ..+.+.+++.+.-+.|+....+.+++.....|+ .|.+.+-.+|.
T Consensus 513 ~~LLeEY~~~GdisEA~~CikeLgmPfFhHEvVkkAlVm~mEkk~d~t~~ldLLk~cf~sgl----IT~nQMtkGf~ 585 (645)
T KOG0403|consen 513 DMLLEEYELSGDISEACHCIKELGMPFFHHEVVKKALVMVMEKKGDSTMILDLLKECFKSGL----ITTNQMTKGFE 585 (645)
T ss_pred HHHHHHHHhccchHHHHHHHHHhCCCcchHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCc----eeHHHhhhhhh
Confidence 45777888889999999999888766 456788888888888888877888877776653 34455555543
No 391
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=72.15 E-value=83 Score=29.11 Aligned_cols=136 Identities=9% Similarity=0.036 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHh-cCChhHHHHHHHHHHHcC--CCCChhHHHHHHHHHHhcCChHHHHH
Q 007808 275 FFEVLDAFKRMLTEGRVFPNDATIVTVLSACAR-LGALDFSKWVHVYAEYNG--YQGNVCVGNALIDMYAKCGIIENAVD 351 (589)
Q Consensus 275 ~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~ 351 (589)
..+|+++|+.....+.+.-|......+++.... .+..-.|..-+-...... -.++..+...++..+++.+++.+-.+
T Consensus 144 Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~kl~~ 223 (292)
T PF13929_consen 144 VVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWNKLFQ 223 (292)
T ss_pred HHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHHHHHH
Q ss_pred HHhhCCCC-----CcchHHHHHHHHHhCCChHHHHHHHHH-----HHHCCCCCCHhHHHHHHHHHhccC
Q 007808 352 VFNSMDTK-----DLITWNTIISGLAMHGRGAGALSLFHE-----MKNAGEMPDGITFIGILCACTHMG 410 (589)
Q Consensus 352 ~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~A~~~~~~-----m~~~~~~p~~~~~~~l~~~~~~~g 410 (589)
+++..... |...|..+|..-...|+..-...+..+ +.+.|+..+...-..+-..+...|
T Consensus 224 fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~~GhLLwikR~~V~v~~~L~~~L~~LF~~vd 292 (292)
T PF13929_consen 224 FWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIIDDGHLLWIKRNNVDVTDELRSQLSELFKKVD 292 (292)
T ss_pred HHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhhCCCeEEeeecCCcCCHHHHHHHHHHHHhcC
No 392
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=72.03 E-value=1.6e+02 Score=32.34 Aligned_cols=27 Identities=26% Similarity=0.506 Sum_probs=22.2
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHc
Q 007808 262 WNGLIGGYANNGLFFEVLDAFKRMLTE 288 (589)
Q Consensus 262 ~~~l~~~~~~~g~~~~A~~~~~~~~~~ 288 (589)
|..|+..|...|+.++|+++|.+....
T Consensus 507 y~~Li~LY~~kg~h~~AL~ll~~l~d~ 533 (877)
T KOG2063|consen 507 YRELIELYATKGMHEKALQLLRDLVDE 533 (877)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHhcc
Confidence 777888888888888888888887663
No 393
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=71.93 E-value=45 Score=25.99 Aligned_cols=60 Identities=18% Similarity=0.205 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHH-------HHhhC-CCCCC-HHHHHHHH----HHHhcCCCHHHHHHHHHHHHc
Q 007808 433 EHYGCMVDLLARAGRLAEAVD-------FVKRM-PIEAD-AVIWANLL----GSCRVYKNVELAELALERLTE 492 (589)
Q Consensus 433 ~~~~~l~~~~~~~g~~~~A~~-------~~~~~-~~~p~-~~~~~~l~----~~~~~~g~~~~A~~~~~~~~~ 492 (589)
..+..|..++...|++++++. +|++- .+..| ...|-..+ .++...|+.++|...|+.+-+
T Consensus 56 ~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~agE 128 (144)
T PF12968_consen 56 FCHAGLSGALAGLGRYDECLQSADRALRYFNRRGELHQDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMAGE 128 (144)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--TTSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Confidence 345556667777777766543 33332 23333 33343333 345667777777777776654
No 394
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=71.11 E-value=17 Score=27.09 Aligned_cols=51 Identities=12% Similarity=0.101 Sum_probs=37.4
Q ss_pred hcCCCHHHHHHHHHHHHccCCCC---------CcchHHHHHHHhhcCChHHHHHHHHHhh
Q 007808 475 RVYKNVELAELALERLTELEPKN---------PANFVMLSNIYGDLGRWKDVARIKVAMR 525 (589)
Q Consensus 475 ~~~g~~~~A~~~~~~~~~~~p~~---------~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 525 (589)
.+.|++.+|.+.+.+.......+ ..+...++.+....|++++|...+++..
T Consensus 9 ~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi 68 (94)
T PF12862_consen 9 LRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAI 68 (94)
T ss_pred HHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 46788888888777777632211 2345567888889999999999998885
No 395
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]
Probab=70.95 E-value=1e+02 Score=29.88 Aligned_cols=93 Identities=10% Similarity=0.028 Sum_probs=52.2
Q ss_pred HHHhccCcHHHHHHHHHHhHHhcCCCCC----hHHHHHHHHHHHhcCCHHHHHHHHhhCCCCC--CHHHHH----HHHHH
Q 007808 404 CACTHMGLVEEGLSYFQSMAMDYSIVPQ----IEHYGCMVDLLARAGRLAEAVDFVKRMPIEA--DAVIWA----NLLGS 473 (589)
Q Consensus 404 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p--~~~~~~----~l~~~ 473 (589)
.++...|+...-..++....+...+..| ....|.|++.|...+.++.|.++..+...+. +..-|. .+...
T Consensus 177 l~~E~~~~l~~~rs~l~~~lrtAtLrhd~e~qavLiN~LLr~yL~n~lydqa~~lvsK~~~pe~~snne~ARY~yY~GrI 256 (493)
T KOG2581|consen 177 LSYELEGRLADIRSFLHALLRTATLRHDEEGQAVLINLLLRNYLHNKLYDQADKLVSKSVYPEAASNNEWARYLYYLGRI 256 (493)
T ss_pred HHHHhhcchHHHHHHHHHHHHHhhhcCcchhHHHHHHHHHHHHhhhHHHHHHHHHhhcccCccccccHHHHHHHHHHhhH
Confidence 3455556666655555554443333333 3445666777777778888887777764211 111121 12233
Q ss_pred HhcCCCHHHHHHHHHHHHccCCC
Q 007808 474 CRVYKNVELAELALERLTELEPK 496 (589)
Q Consensus 474 ~~~~g~~~~A~~~~~~~~~~~p~ 496 (589)
..-++++..|.+.+-.++...|.
T Consensus 257 kaiqldYssA~~~~~qa~rkapq 279 (493)
T KOG2581|consen 257 KAIQLDYSSALEYFLQALRKAPQ 279 (493)
T ss_pred HHhhcchhHHHHHHHHHHHhCcc
Confidence 44567777777777777766664
No 396
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=70.61 E-value=28 Score=28.38 Aligned_cols=79 Identities=19% Similarity=0.169 Sum_probs=37.3
Q ss_pred HHHHHHHHcCCChhHHHHHHHHhhhCC-----CCCCcccHHHHHHHHhccCC-hHHHHHHHHHHHHhCCCCchHHHhHHH
Q 007808 69 NAMFNGYAQNEFHRTVVVLFTQMKKLD-----AMPNCFTFPIVLKSCVKINA-LREGEELHCLVLKNGFRANIFVGTALI 142 (589)
Q Consensus 69 ~~ll~~~~~~~~~~~a~~~~~~m~~~~-----~~p~~~~~~~ll~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~li 142 (589)
|.++.-....+++...+.+++.+.... -..+..+|.+++.+...... --.+..+|..+.+.+.++++.-|..+|
T Consensus 43 N~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~li 122 (145)
T PF13762_consen 43 NCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSCLI 122 (145)
T ss_pred HHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 444444444444444444444442210 02344455555555544333 223445555555555555555555555
Q ss_pred HHHHc
Q 007808 143 ELYST 147 (589)
Q Consensus 143 ~~~~~ 147 (589)
.++.+
T Consensus 123 ~~~l~ 127 (145)
T PF13762_consen 123 KAALR 127 (145)
T ss_pred HHHHc
Confidence 55444
No 397
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=70.37 E-value=95 Score=29.05 Aligned_cols=146 Identities=11% Similarity=-0.053 Sum_probs=73.6
Q ss_pred ChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhc----cCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcC-----
Q 007808 376 RGAGALSLFHEMKNAGEMPDGITFIGILCACTH----MGLVEEGLSYFQSMAMDYSIVPQIEHYGCMVDLLARAG----- 446 (589)
Q Consensus 376 ~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g----- 446 (589)
+..+|.++|+.+.+.|..+ ....|...|.. ..+..+|..+++++... |..+.......+...|...+
T Consensus 92 ~~~~A~~~~~~~a~~g~~~---a~~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~~-g~~~a~~~~~~l~~~~~~g~~~~~~ 167 (292)
T COG0790 92 DKTKAADWYRCAAADGLAE---ALFNLGLMYANGRGVPLDLVKALKYYEKAAKL-GNVEAALAMYRLGLAYLSGLQALAV 167 (292)
T ss_pred cHHHHHHHHHHHhhcccHH---HHHhHHHHHhcCCCcccCHHHHHHHHHHHHHc-CChhHHHHHHHHHHHHHcChhhhcc
Confidence 4555666666555544222 12223333332 23666666666666432 33332122333333333321
Q ss_pred --CHHHHHHHHhhCCCCCCHHHHHHHHHHH----hcCCCHHHHHHHHHHHHccCCCCCcchHHHHHHHhhcC--------
Q 007808 447 --RLAEAVDFVKRMPIEADAVIWANLLGSC----RVYKNVELAELALERLTELEPKNPANFVMLSNIYGDLG-------- 512 (589)
Q Consensus 447 --~~~~A~~~~~~~~~~p~~~~~~~l~~~~----~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g-------- 512 (589)
+...|...+.++-..-+......+...| .-..+.++|...|+++.+... ......++ ++...|
T Consensus 168 ~~~~~~A~~~~~~aa~~~~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g~--~~a~~~~~-~~~~~g~g~~~~~~ 244 (292)
T COG0790 168 AYDDKKALYLYRKAAELGNPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQGD--GAACYNLG-LMYLNGEGVKKAAF 244 (292)
T ss_pred cHHHHhHHHHHHHHHHhcCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCC--HHHHHHHH-HHHhcCCCchhhhh
Confidence 2235666666662222333333344333 224477888888888887766 44555566 555555
Q ss_pred -------ChHHHHHHHHHhhhCC
Q 007808 513 -------RWKDVARIKVAMRDTG 528 (589)
Q Consensus 513 -------~~~~A~~~~~~~~~~~ 528 (589)
+...|...+......+
T Consensus 245 ~~~~~~~~~~~a~~~~~~~~~~~ 267 (292)
T COG0790 245 LTAAKEEDKKQALEWLQKACELG 267 (292)
T ss_pred cccccCCCHHHHHHHHHHHHHcC
Confidence 6666666666664333
No 398
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=70.06 E-value=1.3e+02 Score=30.31 Aligned_cols=242 Identities=10% Similarity=0.003 Sum_probs=133.3
Q ss_pred HHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHhcC------ChhHHHHHHHHHHHcC-C-CCChhHHHHHHHHHHhcCChH
Q 007808 276 FEVLDAFKRMLTEGRVFPNDATIVTVLSACARLG------ALDFSKWVHVYAEYNG-Y-QGNVCVGNALIDMYAKCGIIE 347 (589)
Q Consensus 276 ~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~------~~~~a~~~~~~~~~~~-~-~~~~~~~~~l~~~~~~~g~~~ 347 (589)
+....+|++..+. .|+...+...|..|...- .+.....+++.....+ . +.....|..+.-.+...+...
T Consensus 299 s~~~~v~ee~v~~---l~t~sm~e~YI~~~lE~~~~~r~~~I~h~~~~~~~~~~~~~l~~~~~~~ys~~~l~~~t~~~~r 375 (568)
T KOG2396|consen 299 SRCCAVYEEAVKT---LPTESMWECYITFCLERFTFLRGKRILHTMCVFRKAHELKLLSECLYKQYSVLLLCLNTLNEAR 375 (568)
T ss_pred HHHHHHHHHHHHH---hhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHhccchHh
Confidence 3344677777663 466666666666654322 2333444555544433 1 234556666666666655433
Q ss_pred H-HHHHHhhCCCCCcchHHHHHHHHHhC-CChHH-HHHHHHHHHHCCCCCCHhHHHHHHH-HHhccCcHHHHHHHHHHhH
Q 007808 348 N-AVDVFNSMDTKDLITWNTIISGLAMH-GRGAG-ALSLFHEMKNAGEMPDGITFIGILC-ACTHMGLVEEGLSYFQSMA 423 (589)
Q Consensus 348 ~-A~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~-A~~~~~~m~~~~~~p~~~~~~~l~~-~~~~~g~~~~A~~~~~~~~ 423 (589)
+ |..+..+....+...|-.-++...+. .++.- -.+.+......-..+....+++... .+......+.....+..+
T Consensus 376 ~~a~~l~~e~f~~s~k~~~~kl~~~~~s~sD~q~~f~~l~n~~r~~~~s~~~~~w~s~~~~dsl~~~~~~~Ii~a~~s~- 454 (568)
T KOG2396|consen 376 EVAVKLTTELFRDSGKMWQLKLQVLIESKSDFQMLFEELFNHLRKQVCSELLISWASASEGDSLQEDTLDLIISALLSV- 454 (568)
T ss_pred HHHHHhhHHHhcchHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHhcchhHHHHHHHhhccchhHHHHHHHHHHHHHh-
Confidence 3 34444344455666665555554422 12221 1222333333222333334444330 111111112222222222
Q ss_pred HhcCCCCChHH-HHHHHHHHHhcCCHHHHHHHHhhCC-C-CCCHHHHHHHHHHH--hcCCCHHHHHHHHHHHHccCCCCC
Q 007808 424 MDYSIVPQIEH-YGCMVDLLARAGRLAEAVDFVKRMP-I-EADAVIWANLLGSC--RVYKNVELAELALERLTELEPKNP 498 (589)
Q Consensus 424 ~~~~~~~~~~~-~~~l~~~~~~~g~~~~A~~~~~~~~-~-~p~~~~~~~l~~~~--~~~g~~~~A~~~~~~~~~~~p~~~ 498 (589)
..|+..+ -+.+++.+.+.|-.++|...+..+. . +|+...|..++..- ...-+..-+.++|+.+..--..++
T Consensus 455 ----~~~~~~tl~s~~l~~~~e~~~~~~ark~y~~l~~lpp~sl~l~r~miq~e~~~~sc~l~~~r~~yd~a~~~fg~d~ 530 (568)
T KOG2396|consen 455 ----IGADSVTLKSKYLDWAYESGGYKKARKVYKSLQELPPFSLDLFRKMIQFEKEQESCNLANIREYYDRALREFGADS 530 (568)
T ss_pred ----cCCceeehhHHHHHHHHHhcchHHHHHHHHHHHhCCCccHHHHHHHHHHHhhHhhcCchHHHHHHHHHHHHhCCCh
Confidence 2355433 3567888889999999999999883 2 44667777777432 222347788899999887444668
Q ss_pred cchHHHHHHHhhcCChHHHHHHHHHhh
Q 007808 499 ANFVMLSNIYGDLGRWKDVARIKVAMR 525 (589)
Q Consensus 499 ~~~~~l~~~~~~~g~~~~A~~~~~~~~ 525 (589)
..|......-...|..+.+-.++.++.
T Consensus 531 ~lw~~y~~~e~~~g~~en~~~~~~ra~ 557 (568)
T KOG2396|consen 531 DLWMDYMKEELPLGRPENCGQIYWRAM 557 (568)
T ss_pred HHHHHHHHhhccCCCcccccHHHHHHH
Confidence 889888888888999888888877664
No 399
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=69.73 E-value=61 Score=29.71 Aligned_cols=85 Identities=19% Similarity=0.165 Sum_probs=36.2
Q ss_pred HHHHHhCCChHHHHHHHHHHHH--CCCCCCHhHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHH--
Q 007808 368 ISGLAMHGRGAGALSLFHEMKN--AGEMPDGITFIGILCACTHMGLVEEGLSYFQSMAMDYSIVPQIEHYGCMVDLLA-- 443 (589)
Q Consensus 368 ~~~~~~~~~~~~A~~~~~~m~~--~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~-- 443 (589)
|++++..+++.+++.+.-+--+ ..++|... ..-|-.|.+.|.+..+.++-..-.+. .-.-+...|..++..|.
T Consensus 90 IQALAEmnrWreVLsWvlqyYq~pEklPpkIl--eLCILLysKv~Ep~amlev~~~WL~~-p~Nq~lp~y~~vaELyLl~ 166 (309)
T PF07163_consen 90 IQALAEMNRWREVLSWVLQYYQVPEKLPPKIL--ELCILLYSKVQEPAAMLEVASAWLQD-PSNQSLPEYGTVAELYLLH 166 (309)
T ss_pred HHHHHHHhhHHHHHHHHHHHhcCcccCCHHHH--HHHHHHHHHhcCHHHHHHHHHHHHhC-cccCCchhhHHHHHHHHHH
Confidence 4455555555555544333222 11222222 22222355555555555555444332 11111222444443332
Q ss_pred ---hcCCHHHHHHHH
Q 007808 444 ---RAGRLAEAVDFV 455 (589)
Q Consensus 444 ---~~g~~~~A~~~~ 455 (589)
=.|.+++|+++.
T Consensus 167 VLlPLG~~~eAeelv 181 (309)
T PF07163_consen 167 VLLPLGHFSEAEELV 181 (309)
T ss_pred HHhccccHHHHHHHH
Confidence 356666666655
No 400
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=69.05 E-value=29 Score=27.62 Aligned_cols=42 Identities=12% Similarity=0.068 Sum_probs=31.5
Q ss_pred HHHHHHHHHHc--cCCCCCcchHHHHHHHhhcCChHHHHHHHHH
Q 007808 482 LAELALERLTE--LEPKNPANFVMLSNIYGDLGRWKDVARIKVA 523 (589)
Q Consensus 482 ~A~~~~~~~~~--~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 523 (589)
.+.++|+.+.+ +.-..+..|...+..+...|++++|.++++.
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~ 124 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQL 124 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 77778887776 4555667788888888888888888888765
No 401
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=68.53 E-value=1.1e+02 Score=28.85 Aligned_cols=19 Identities=32% Similarity=0.366 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHccCCCCCc
Q 007808 481 ELAELALERLTELEPKNPA 499 (589)
Q Consensus 481 ~~A~~~~~~~~~~~p~~~~ 499 (589)
..|.+...++.+.+|.-|.
T Consensus 379 ~~AvEAihRAvEFNPHVPk 397 (556)
T KOG3807|consen 379 INAVEAIHRAVEFNPHVPK 397 (556)
T ss_pred HHHHHHHHHHhhcCCCCcH
Confidence 3577788888888887443
No 402
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=68.24 E-value=24 Score=27.67 Aligned_cols=59 Identities=14% Similarity=0.162 Sum_probs=45.2
Q ss_pred HHHHHHHHhhhCCCCCCcccHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchHHHhHHH
Q 007808 83 TVVVLFTQMKKLDAMPNCFTFPIVLKSCVKINALREGEELHCLVLKNGFRANIFVGTALI 142 (589)
Q Consensus 83 ~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li 142 (589)
+..+.++.+...++.|++......+++|.+.+|+..|..+|+-+... ..+...+|..++
T Consensus 67 EvrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K-~g~~k~~Y~y~v 125 (149)
T KOG4077|consen 67 EVRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDK-CGAQKQVYPYYV 125 (149)
T ss_pred HHHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHh-cccHHHHHHHHH
Confidence 44556677777788999999999999999999999999999987654 233333565554
No 403
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=68.05 E-value=22 Score=28.34 Aligned_cols=71 Identities=13% Similarity=0.037 Sum_probs=48.3
Q ss_pred CCChHHHHHHHHHHHhcCCHHH---HHHHHhhC-C-CCCC--HHHHHHHHHHHhcCCCHHHHHHHHHHHHccCCCCCc
Q 007808 429 VPQIEHYGCMVDLLARAGRLAE---AVDFVKRM-P-IEAD--AVIWANLLGSCRVYKNVELAELALERLTELEPKNPA 499 (589)
Q Consensus 429 ~~~~~~~~~l~~~~~~~g~~~~---A~~~~~~~-~-~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 499 (589)
.++..+.-.+..++.+..+.++ -+.++++. + -.|+ ......|.-++.+.++++++.++.+..++.+|+|..
T Consensus 29 ~~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Q 106 (149)
T KOG3364|consen 29 DVSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQ 106 (149)
T ss_pred cchHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHH
Confidence 4555555566777777766554 45566655 2 2332 233444557788999999999999999999998663
No 404
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=67.79 E-value=75 Score=29.13 Aligned_cols=86 Identities=12% Similarity=0.042 Sum_probs=43.1
Q ss_pred HHHHHhCCChHHHHHHHHHHHHcC-CCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhHHHHHHHHHHh--
Q 007808 266 IGGYANNGLFFEVLDAFKRMLTEG-RVFPNDATIVTVLSACARLGALDFSKWVHVYAEYNGYQGNVCVGNALIDMYAK-- 342 (589)
Q Consensus 266 ~~~~~~~g~~~~A~~~~~~~~~~~-~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-- 342 (589)
|.+++..|+|.+++...-+-.+.. +++| ......|-.|.+.+.+..+.++-.......-..+..-|.+++..|..
T Consensus 90 IQALAEmnrWreVLsWvlqyYq~pEklPp--kIleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~V 167 (309)
T PF07163_consen 90 IQALAEMNRWREVLSWVLQYYQVPEKLPP--KILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLHV 167 (309)
T ss_pred HHHHHHHhhHHHHHHHHHHHhcCcccCCH--HHHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHHH
Confidence 566777777777766554443321 0222 23333344456666666665555554443222233335555554433
Q ss_pred ---cCChHHHHHHH
Q 007808 343 ---CGIIENAVDVF 353 (589)
Q Consensus 343 ---~g~~~~A~~~~ 353 (589)
.|.+++|+++.
T Consensus 168 LlPLG~~~eAeelv 181 (309)
T PF07163_consen 168 LLPLGHFSEAEELV 181 (309)
T ss_pred HhccccHHHHHHHH
Confidence 45555555544
No 405
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=66.77 E-value=18 Score=21.15 Aligned_cols=28 Identities=14% Similarity=-0.090 Sum_probs=14.1
Q ss_pred HHHHHHhcCCCHHHHHHH--HHHHHccCCC
Q 007808 469 NLLGSCRVYKNVELAELA--LERLTELEPK 496 (589)
Q Consensus 469 ~l~~~~~~~g~~~~A~~~--~~~~~~~~p~ 496 (589)
.+...+..+|++++|+++ |+-+..++|.
T Consensus 6 ~~a~~~y~~~ky~~A~~~~~y~~l~~ld~~ 35 (36)
T PF07720_consen 6 GLAYNFYQKGKYDEAIHFFQYAFLCALDKY 35 (36)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHhccc
Confidence 344445566666666666 3355544443
No 406
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=66.08 E-value=40 Score=26.52 Aligned_cols=70 Identities=11% Similarity=0.153 Sum_probs=50.8
Q ss_pred HHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHhhC
Q 007808 379 GALSLFHEMKNAGEMPDGITFIGILCACTHMGLVEEGLSYFQSMAMDYSIVPQIEHYGCMVDLLARAGRLAEAVDFVKRM 458 (589)
Q Consensus 379 ~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 458 (589)
+..+-+..+....+.|++......+++|.+.+++..|..+|+.+..+.| +....|..+++ +-..+++++
T Consensus 67 EvrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K~g--~~k~~Y~y~v~---------elkpvl~EL 135 (149)
T KOG4077|consen 67 EVRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDKCG--AQKQVYPYYVK---------ELKPVLNEL 135 (149)
T ss_pred HHHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHhcc--cHHHHHHHHHH---------HHHHHHHHh
Confidence 4555666677778899999999999999999999999999998865433 33335655543 334555565
Q ss_pred C
Q 007808 459 P 459 (589)
Q Consensus 459 ~ 459 (589)
+
T Consensus 136 G 136 (149)
T KOG4077|consen 136 G 136 (149)
T ss_pred C
Confidence 4
No 407
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=65.65 E-value=4 Score=39.87 Aligned_cols=95 Identities=11% Similarity=-0.028 Sum_probs=67.3
Q ss_pred HHHHhcCCCHHHHHHHHHHHHccCCCCCcchHHHHHHHhhcCChHHHHHHHHHhhhCCCccCCccceeeeCCeee-----
Q 007808 471 LGSCRVYKNVELAELALERLTELEPKNPANFVMLSNIYGDLGRWKDVARIKVAMRDTGFKKLPGCSSIEVNEVVM----- 545 (589)
Q Consensus 471 ~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~----- 545 (589)
+..+...+.++.|+..|.++++++|+....+..-+.++.+.+++..|+.-..++.+.. |......+..+....
T Consensus 11 an~~l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~d--P~~~K~Y~rrg~a~m~l~~~ 88 (476)
T KOG0376|consen 11 ANEALKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELD--PTYIKAYVRRGTAVMALGEF 88 (476)
T ss_pred HhhhcccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcC--chhhheeeeccHHHHhHHHH
Confidence 3455677899999999999999999999999999999999999999999877774333 222222222221110
Q ss_pred -------eeccccCCCchHHHHHHHHHHH
Q 007808 546 -------LGCLSRELDRKSIVRAEANMIK 567 (589)
Q Consensus 546 -------~~~~~~~p~~~~~~~~l~~~~~ 567 (589)
+....+.|+++.+.-.+...-.
T Consensus 89 ~~A~~~l~~~~~l~Pnd~~~~r~~~Ec~~ 117 (476)
T KOG0376|consen 89 KKALLDLEKVKKLAPNDPDATRKIDECNK 117 (476)
T ss_pred HHHHHHHHHhhhcCcCcHHHHHHHHHHHH
Confidence 0155788998888776665543
No 408
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=65.64 E-value=19 Score=29.22 Aligned_cols=63 Identities=17% Similarity=0.112 Sum_probs=45.3
Q ss_pred HHHHHHHHhhCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHccCCCCCcchHHHHHHHhhcCC
Q 007808 448 LAEAVDFVKRMPIEADAVIWANLLGSCRVYKNVELAELALERLTELEPKNPANFVMLSNIYGDLGR 513 (589)
Q Consensus 448 ~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 513 (589)
-+.|.++.+-|+ ...............|++..|.++.+.++..+|+|..+....+++|.+.|.
T Consensus 57 ~~~A~~~v~l~G---G~d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg~ 119 (141)
T PF14863_consen 57 EEEAKRYVELAG---GADKVLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLGY 119 (141)
T ss_dssp HHHHHHHHHHTT---CHHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcC---CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHH
Confidence 456677777775 233333344566789999999999999999999999999888888877664
No 409
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=65.12 E-value=1.9e+02 Score=30.65 Aligned_cols=156 Identities=8% Similarity=0.085 Sum_probs=78.2
Q ss_pred cchHHHHHHHH-ccCChhHHHHHhhcCCC----CCcc-----cHHHHHHHHHcCCChhHHHHHHHHhhhCCCC----CCc
Q 007808 35 YITPRIITACA-QLKQMTYARKMFDKITD----QNVV-----SWNAMFNGYAQNEFHRTVVVLFTQMKKLDAM----PNC 100 (589)
Q Consensus 35 ~~~~~l~~~~~-~~~~~~~A~~~~~~~~~----~~~~-----~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~----p~~ 100 (589)
.++..+...|. ...+++.|+..+++... ++.. ....++..+.+.+. ..|...+++..+.--. +-.
T Consensus 60 ~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~-~~a~~~l~~~I~~~~~~~~~~w~ 138 (608)
T PF10345_consen 60 RVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNP-KAALKNLDKAIEDSETYGHSAWY 138 (608)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCH-HHHHHHHHHHHHHHhccCchhHH
Confidence 45556677666 57788888888887542 1111 12233444444443 3488777776553111 111
Q ss_pred ccHHHH-HHHHhccCChHHHHHHHHHHHHhC---CCCchHHHhHHHHHHH--cCCChHHHHHHHccCCC-----------
Q 007808 101 FTFPIV-LKSCVKINALREGEELHCLVLKNG---FRANIFVGTALIELYS--TGKAIEAAYKVFGEMDE----------- 163 (589)
Q Consensus 101 ~~~~~l-l~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~li~~~~--~~g~~~~A~~~~~~~~~----------- 163 (589)
..|..+ +..+...++...|.+.++.+.... .+|-..++-.++.+.. +.+..+++.+.++++..
T Consensus 139 ~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~~d~~~~l~~~~~~~~~~q~~~~~ 218 (608)
T PF10345_consen 139 YAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSPDDVLELLQRAIAQARSLQLDPSV 218 (608)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhcccCCCC
Confidence 222222 222222368888888887776543 2344445544544443 33444455555544310
Q ss_pred --CCeehHHHHHHHH--HhCCCHHHHHHHHHh
Q 007808 164 --RNVVVWTSMINGY--ISCGDIVSARCLFEL 191 (589)
Q Consensus 164 --~~~~~~~~l~~~~--~~~g~~~~a~~~~~~ 191 (589)
|-..+|..+++.+ ...|++..+...++.
T Consensus 219 ~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~ 250 (608)
T PF10345_consen 219 HIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQ 250 (608)
T ss_pred CcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 1223455554443 355665555555443
No 410
>PHA02875 ankyrin repeat protein; Provisional
Probab=65.02 E-value=1.5e+02 Score=29.43 Aligned_cols=137 Identities=12% Similarity=0.060 Sum_probs=69.6
Q ss_pred HHHHHHHHhCCCCCccc--hHHHHHHHHccCChhHHHHHhhcCCCCCcc--cHHHHHHHHHcCCChhHHHHHHHHhhhCC
Q 007808 20 QIQTQVVTSGLEKSDYI--TPRIITACAQLKQMTYARKMFDKITDQNVV--SWNAMFNGYAQNEFHRTVVVLFTQMKKLD 95 (589)
Q Consensus 20 ~~~~~~~~~g~~~~~~~--~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~--~~~~ll~~~~~~~~~~~a~~~~~~m~~~~ 95 (589)
.+...+.+.|..|+... ..+.+...++.|+.+-+..+++....++.. .....+...+..|+.+.+..+++.-....
T Consensus 16 ~iv~~Ll~~g~~~n~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~~~~~~ 95 (413)
T PHA02875 16 DIARRLLDIGINPNFEIYDGISPIKLAMKFRDSEAIKLLMKHGAIPDVKYPDIESELHDAVEEGDVKAVEELLDLGKFAD 95 (413)
T ss_pred HHHHHHHHCCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCccccCCCcccHHHHHHHCCCHHHHHHHHHcCCccc
Confidence 34566667787776543 345566667788888777777665443322 11233445556777766555544321110
Q ss_pred CCCCcccHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchHH--HhHHHHHHHcCCChHHHHHHHccC
Q 007808 96 AMPNCFTFPIVLKSCVKINALREGEELHCLVLKNGFRANIFV--GTALIELYSTGKAIEAAYKVFGEM 161 (589)
Q Consensus 96 ~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~li~~~~~~g~~~~A~~~~~~~ 161 (589)
-..+..-. +.+...+..|+. ++.+.+++.|..|+... -.+.+...+..|+.+-+..+++.-
T Consensus 96 ~~~~~~g~-tpL~~A~~~~~~----~iv~~Ll~~gad~~~~~~~g~tpLh~A~~~~~~~~v~~Ll~~g 158 (413)
T PHA02875 96 DVFYKDGM-TPLHLATILKKL----DIMKLLIARGADPDIPNTDKFSPLHLAVMMGDIKGIELLIDHK 158 (413)
T ss_pred ccccCCCC-CHHHHHHHhCCH----HHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcC
Confidence 01111112 223333444554 45555666676554321 123344455567766666665543
No 411
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=64.96 E-value=18 Score=36.89 Aligned_cols=84 Identities=12% Similarity=0.095 Sum_probs=62.9
Q ss_pred HHhcCCHHHHHHHHhhC-CCCC-C------HHHHHHHHHHHhcCCCHHHHHHHHHHHHccCCCCCcchHHHHHHHhhcCC
Q 007808 442 LARAGRLAEAVDFVKRM-PIEA-D------AVIWANLLGSCRVYKNVELAELALERLTELEPKNPANFVMLSNIYGDLGR 513 (589)
Q Consensus 442 ~~~~g~~~~A~~~~~~~-~~~p-~------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 513 (589)
..+..++..+.++|+.- ..-| | ......+.-+|....+.+.|.++++++-+.+|.++-.-.....+..-.|+
T Consensus 364 ~F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~l~q~~~~~~~~~E~~ 443 (872)
T KOG4814|consen 364 LFKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQSPLCQLLMLQSFLAEDK 443 (872)
T ss_pred HHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHhcc
Confidence 44677888888877653 2111 1 23345555667788899999999999999999988777777888888899
Q ss_pred hHHHHHHHHHhh
Q 007808 514 WKDVARIKVAMR 525 (589)
Q Consensus 514 ~~~A~~~~~~~~ 525 (589)
-++|+..+....
T Consensus 444 Se~AL~~~~~~~ 455 (872)
T KOG4814|consen 444 SEEALTCLQKIK 455 (872)
T ss_pred hHHHHHHHHHHH
Confidence 999999887774
No 412
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=62.96 E-value=1.1e+02 Score=27.04 Aligned_cols=125 Identities=18% Similarity=0.076 Sum_probs=75.1
Q ss_pred hHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC----hHHHHHH
Q 007808 363 TWNTIISGLAMHGRGAGALSLFHEMKNAGEMPDGITFIGILCACTHMGLVEEGLSYFQSMAMDYSIVPQ----IEHYGCM 438 (589)
Q Consensus 363 ~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~~l 438 (589)
+.+..++.+.+.+...+++...++-.+.. +.|..+-..++..++-.|+|++|..-++-.. .+.|+ ...|..+
T Consensus 3 Tl~~t~seLL~~~sL~dai~~a~~qVkak-Ptda~~RhflfqLlcvaGdw~kAl~Ql~l~a---~l~p~~t~~a~lyr~l 78 (273)
T COG4455 3 TLRDTISELLDDNSLQDAIGLARDQVKAK-PTDAGGRHFLFQLLCVAGDWEKALAQLNLAA---TLSPQDTVGASLYRHL 78 (273)
T ss_pred chHHHHHHHHHhccHHHHHHHHHHHHhcC-CccccchhHHHHHHhhcchHHHHHHHHHHHh---hcCcccchHHHHHHHH
Confidence 34455677888888999999888877752 3466677778888999999999988777653 23343 4566665
Q ss_pred HHHHHhcCCHHHHH-HHHhhC--C---CCCCHHHHHHHHHHH--hcCCCHHHHHHHHHHHHccCCCCC
Q 007808 439 VDLLARAGRLAEAV-DFVKRM--P---IEADAVIWANLLGSC--RVYKNVELAELALERLTELEPKNP 498 (589)
Q Consensus 439 ~~~~~~~g~~~~A~-~~~~~~--~---~~p~~~~~~~l~~~~--~~~g~~~~A~~~~~~~~~~~p~~~ 498 (589)
+.+ +.+. ++|.-- + ..|.+.-...+..+. ...|..+.+..+-+.+++..|..+
T Consensus 79 ir~-------ea~R~evfag~~~Pgflg~p~p~wva~L~aala~h~dg~gea~~alreqal~aa~~~i 139 (273)
T COG4455 79 IRC-------EAARNEVFAGGAVPGFLGGPSPEWVAALLAALALHSDGAGEARTALREQALKAAPVPI 139 (273)
T ss_pred HHH-------HHHHHHHhccCCCCCCcCCCCHHHHHHHHHHHhcccCCcchHHHHHHHHHHhhCCCCC
Confidence 543 2222 233322 1 123333333444443 333455555666677777666533
No 413
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=62.88 E-value=33 Score=31.52 Aligned_cols=52 Identities=10% Similarity=-0.049 Sum_probs=24.1
Q ss_pred HHHHcCCChhHHHHHHHHhhhCCCCCCcccHHHHHHHHhccCChHHHHHHHHH
Q 007808 73 NGYAQNEFHRTVVVLFTQMKKLDAMPNCFTFPIVLKSCVKINALREGEELHCL 125 (589)
Q Consensus 73 ~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~ 125 (589)
..|..+|.+.+|.++-+.....+ +.+...+..+++.+...||--.+.+-++.
T Consensus 287 ~~yle~g~~neAi~l~qr~ltld-pL~e~~nk~lm~~la~~gD~is~~khyer 338 (361)
T COG3947 287 RAYLEAGKPNEAIQLHQRALTLD-PLSEQDNKGLMASLATLGDEISAIKHYER 338 (361)
T ss_pred HHHHHcCChHHHHHHHHHHhhcC-hhhhHHHHHHHHHHHHhccchhhhhHHHH
Confidence 34444555555555554444433 33444444455555555554444444333
No 414
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=62.72 E-value=27 Score=25.45 Aligned_cols=63 Identities=5% Similarity=-0.024 Sum_probs=33.7
Q ss_pred HHHHHHHHHHhCCCCchHHHhHHHHHHHcCCChHHHHHHHccCCCCCeehHHHHHHHHHhCCCHH
Q 007808 119 GEELHCLVLKNGFRANIFVGTALIELYSTGKAIEAAYKVFGEMDERNVVVWTSMINGYISCGDIV 183 (589)
Q Consensus 119 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 183 (589)
+.++++.+.+.|+- +......+-..-...|+.+.|.+++..+. +.+..+...+.++-..|.-.
T Consensus 21 ~~~v~d~ll~~~il-T~~d~e~I~aa~~~~g~~~~ar~LL~~L~-rg~~aF~~Fl~aLreT~~~~ 83 (88)
T cd08819 21 TRDVCDKCLEQGLL-TEEDRNRIEAATENHGNESGARELLKRIV-QKEGWFSKFLQALRETEHHE 83 (88)
T ss_pred HHHHHHHHHhcCCC-CHHHHHHHHHhccccCcHHHHHHHHHHhc-cCCcHHHHHHHHHHHcCchh
Confidence 45666666666632 22222222222224466666666666666 66666666666665555433
No 415
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=62.56 E-value=27 Score=32.28 Aligned_cols=81 Identities=6% Similarity=0.095 Sum_probs=49.2
Q ss_pred CCCCChHHHHHHHHHHHhcCCHHHHHHHHhhC-CCCC-CHHHHHH-HHHHHhcCCCHHHHHHHHHHHHccCCCCCcchHH
Q 007808 427 SIVPQIEHYGCMVDLLARAGRLAEAVDFVKRM-PIEA-DAVIWAN-LLGSCRVYKNVELAELALERLTELEPKNPANFVM 503 (589)
Q Consensus 427 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~-l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~ 503 (589)
.+..|+..|...+.-..+.|.+.+.-.++.+. ...| |...|-. --.-+...++++.+..++.+.++++|++|..|..
T Consensus 102 kff~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~p~iw~e 181 (435)
T COG5191 102 KFFNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSRSPRIWIE 181 (435)
T ss_pred cCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCCCchHHHH
Confidence 34456666766666555666666666666665 3334 3444422 1133456677777888888888888877776665
Q ss_pred HHHH
Q 007808 504 LSNI 507 (589)
Q Consensus 504 l~~~ 507 (589)
..++
T Consensus 182 yfr~ 185 (435)
T COG5191 182 YFRM 185 (435)
T ss_pred HHHH
Confidence 5443
No 416
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=62.50 E-value=59 Score=25.41 Aligned_cols=61 Identities=16% Similarity=0.084 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHc-------cCCCCC----cchHHHHHHHhhcCChHHHHHHHHHh
Q 007808 464 AVIWANLLGSCRVYKNVELAELALERLTE-------LEPKNP----ANFVMLSNIYGDLGRWKDVARIKVAM 524 (589)
Q Consensus 464 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-------~~p~~~----~~~~~l~~~~~~~g~~~~A~~~~~~~ 524 (589)
...+..|-.++...|++++++...++++. ++.+.- .+..+-+..+...|+.++|...|+..
T Consensus 55 A~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~a 126 (144)
T PF12968_consen 55 AFCHAGLSGALAGLGRYDECLQSADRALRYFNRRGELHQDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMA 126 (144)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--TTSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHHHHhcCChHHHHHHHHHH
Confidence 34455566788999999988877777664 555432 34456677788899999999988765
No 417
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=62.45 E-value=62 Score=24.04 Aligned_cols=53 Identities=15% Similarity=0.177 Sum_probs=29.0
Q ss_pred HhCCChHHHHHHHHHHHHCC---CCCC-----HhHHHHHHHHHhccCcHHHHHHHHHHhHH
Q 007808 372 AMHGRGAGALSLFHEMKNAG---EMPD-----GITFIGILCACTHMGLVEEGLSYFQSMAM 424 (589)
Q Consensus 372 ~~~~~~~~A~~~~~~m~~~~---~~p~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 424 (589)
.+.|++.+|.+.+.+..+.. ..+. ......+.......|++++|.+.+++.++
T Consensus 9 ~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~ 69 (94)
T PF12862_consen 9 LRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIR 69 (94)
T ss_pred HHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 45677777766665554321 1111 11222344455666777777777777654
No 418
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=61.27 E-value=87 Score=25.62 Aligned_cols=92 Identities=13% Similarity=0.165 Sum_probs=71.7
Q ss_pred HHHHhCCCCCc--cchHHHHHHHHccCChhHHHHHhhcCCC---------CCcccHHHHHHHHHcCCC-hhHHHHHHHHh
Q 007808 24 QVVTSGLEKSD--YITPRIITACAQLKQMTYARKMFDKITD---------QNVVSWNAMFNGYAQNEF-HRTVVVLFTQM 91 (589)
Q Consensus 24 ~~~~~g~~~~~--~~~~~l~~~~~~~~~~~~A~~~~~~~~~---------~~~~~~~~ll~~~~~~~~-~~~a~~~~~~m 91 (589)
.|.+.+..++. ...|.++.-.+..+++.-...+++.+.. .+...|+.++.+..+... --.+..+|..|
T Consensus 27 y~~~~~~~~~~k~~fiN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~L 106 (145)
T PF13762_consen 27 YMQEENASQSTKTIFINCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFL 106 (145)
T ss_pred HhhhcccChhHHHHHHHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHH
Confidence 34555666655 3457788888888899999998888753 456789999999977766 45578889999
Q ss_pred hhCCCCCCcccHHHHHHHHhccCC
Q 007808 92 KKLDAMPNCFTFPIVLKSCVKINA 115 (589)
Q Consensus 92 ~~~~~~p~~~~~~~ll~~~~~~~~ 115 (589)
++.+.+++..-|..++.++.+...
T Consensus 107 k~~~~~~t~~dy~~li~~~l~g~~ 130 (145)
T PF13762_consen 107 KKNDIEFTPSDYSCLIKAALRGYF 130 (145)
T ss_pred HHcCCCCCHHHHHHHHHHHHcCCC
Confidence 988889999999999999877533
No 419
>KOG4521 consensus Nuclear pore complex, Nup160 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=60.89 E-value=2.9e+02 Score=31.23 Aligned_cols=59 Identities=10% Similarity=0.018 Sum_probs=28.6
Q ss_pred HHHHHHHHhccCcHHHHHHHHHHhHHhcCCC-CC-hHHHHHHHHHHHhcCCHHHHHHHHhh
Q 007808 399 FIGILCACTHMGLVEEGLSYFQSMAMDYSIV-PQ-IEHYGCMVDLLARAGRLAEAVDFVKR 457 (589)
Q Consensus 399 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~-~~~~~~l~~~~~~~g~~~~A~~~~~~ 457 (589)
|..+++.+.+.+-.+.+.++-..+++..+.. |. ..+++++.+.....|.+-+|...+-+
T Consensus 986 Ylkv~rlle~hn~~E~vcQlA~~AIe~l~dd~ps~a~~~t~vFnhhldlgh~~qAy~ai~~ 1046 (1480)
T KOG4521|consen 986 YLKVVRLLEEHNHAEEVCQLAVKAIENLPDDNPSVALISTTVFNHHLDLGHWFQAYKAILR 1046 (1480)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhhhchhhHHHHHHHHHc
Confidence 4445555555555555555555444421110 11 23445555555566666655554443
No 420
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=60.82 E-value=73 Score=24.33 Aligned_cols=81 Identities=7% Similarity=-0.000 Sum_probs=49.7
Q ss_pred ccCChHHHHHHHHHHHHhCCCCchHHHhHHHHHHHcCCChHHHHHHHccCCCCCeehHHHHHHHHHhCCCHHHHHHHHHh
Q 007808 112 KINALREGEELHCLVLKNGFRANIFVGTALIELYSTGKAIEAAYKVFGEMDERNVVVWTSMINGYISCGDIVSARCLFEL 191 (589)
Q Consensus 112 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 191 (589)
.....++|..+.+.+...+- ....+--+-+..+.+.|++++|+..=.....||...|-+|.. .+.|--+++...+.+
T Consensus 18 G~HcH~EA~tIa~wL~~~~~-~~E~v~lIr~~sLmNrG~Yq~ALl~~~~~~~pdL~p~~AL~a--~klGL~~~~e~~l~r 94 (116)
T PF09477_consen 18 GHHCHQEANTIADWLEQEGE-MEEVVALIRLSSLMNRGDYQEALLLPQCHCYPDLEPWAALCA--WKLGLASALESRLTR 94 (116)
T ss_dssp TTT-HHHHHHHHHHHHHTTT-THHHHHHHHHHHHHHTT-HHHHHHHHTTS--GGGHHHHHHHH--HHCT-HHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHhhHHHHHHHHhcccCCCccHHHHHHHHH--HhhccHHHHHHHHHH
Confidence 33567888888888877653 233344444556777888888866655556677777766543 467777777777775
Q ss_pred CCCC
Q 007808 192 APER 195 (589)
Q Consensus 192 ~~~~ 195 (589)
+...
T Consensus 95 la~~ 98 (116)
T PF09477_consen 95 LASS 98 (116)
T ss_dssp HCT-
T ss_pred HHhC
Confidence 5544
No 421
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=60.63 E-value=34 Score=29.71 Aligned_cols=34 Identities=21% Similarity=0.197 Sum_probs=13.9
Q ss_pred CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHccCC
Q 007808 462 ADAVIWANLLGSCRVYKNVELAELALERLTELEP 495 (589)
Q Consensus 462 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p 495 (589)
|++..+..++.++...|+.++|.+..+++..+-|
T Consensus 142 P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP 175 (193)
T PF11846_consen 142 PDPNVYQRYALALALLGDPEEARQWLARARRLYP 175 (193)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 3344444444444444444444444444444433
No 422
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=60.14 E-value=1.4e+02 Score=27.46 Aligned_cols=55 Identities=11% Similarity=0.026 Sum_probs=37.6
Q ss_pred HHHHHHhCCChHHHHHHHHHHHHCCCCCCHhH-------HHHHHHHHhccCcHHHHHHHHHH
Q 007808 367 IISGLAMHGRGAGALSLFHEMKNAGEMPDGIT-------FIGILCACTHMGLVEEGLSYFQS 421 (589)
Q Consensus 367 l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~-------~~~l~~~~~~~g~~~~A~~~~~~ 421 (589)
+.+-..+.+++++|+..+.+....|+..+..+ ...+...|...|++..-.+....
T Consensus 9 ~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~ 70 (421)
T COG5159 9 LANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITS 70 (421)
T ss_pred HHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHh
Confidence 34455677889999999999998887776554 44555666677766655554433
No 423
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=59.94 E-value=77 Score=24.39 Aligned_cols=28 Identities=14% Similarity=0.234 Sum_probs=22.0
Q ss_pred chHHHHHHHHHhCCChHHHHHHHHHHHH
Q 007808 362 ITWNTIISGLAMHGRGAGALSLFHEMKN 389 (589)
Q Consensus 362 ~~~~~l~~~~~~~~~~~~A~~~~~~m~~ 389 (589)
.-|..|+..|...|..++|++++.++..
T Consensus 40 ~~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 40 GKYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CCHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 3577788888888888888888887776
No 424
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=59.48 E-value=77 Score=24.20 Aligned_cols=51 Identities=16% Similarity=0.152 Sum_probs=23.0
Q ss_pred HHHhcCChHHHHHHHhhCCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHHCC
Q 007808 339 MYAKCGIIENAVDVFNSMDTKDLITWNTIISGLAMHGRGAGALSLFHEMKNAG 391 (589)
Q Consensus 339 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~ 391 (589)
.+.+.|++++|...=.....||...|-+|- -.+.|-.+++...+.++..+|
T Consensus 49 sLmNrG~Yq~ALl~~~~~~~pdL~p~~AL~--a~klGL~~~~e~~l~rla~~g 99 (116)
T PF09477_consen 49 SLMNRGDYQEALLLPQCHCYPDLEPWAALC--AWKLGLASALESRLTRLASSG 99 (116)
T ss_dssp HHHHTT-HHHHHHHHTTS--GGGHHHHHHH--HHHCT-HHHHHHHHHHHCT-S
T ss_pred HHHhhHHHHHHHHhcccCCCccHHHHHHHH--HHhhccHHHHHHHHHHHHhCC
Confidence 345556666663333333345555554432 234555555555555555443
No 425
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=57.16 E-value=60 Score=27.61 Aligned_cols=27 Identities=26% Similarity=0.353 Sum_probs=13.0
Q ss_pred HHhcCCCHHHHHHHHHHHHccCCCCCcc
Q 007808 473 SCRVYKNVELAELALERLTELEPKNPAN 500 (589)
Q Consensus 473 ~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 500 (589)
.|.+.|.+++|.+++++..+ +|++...
T Consensus 120 VCm~~g~Fk~A~eiLkr~~~-d~~~~~~ 146 (200)
T cd00280 120 VCMENGEFKKAEEVLKRLFS-DPESQKL 146 (200)
T ss_pred HHHhcCchHHHHHHHHHHhc-CCCchhH
Confidence 34455555555555555554 4443333
No 426
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=56.66 E-value=2.7e+02 Score=29.58 Aligned_cols=87 Identities=22% Similarity=0.284 Sum_probs=45.4
Q ss_pred HHHHHHhcCCHHHHHHHHhhCCCCCC--HHHHHHHH-HHHhcCCC-----------HHHHHHHHHHHHc-------cCCC
Q 007808 438 MVDLLARAGRLAEAVDFVKRMPIEAD--AVIWANLL-GSCRVYKN-----------VELAELALERLTE-------LEPK 496 (589)
Q Consensus 438 l~~~~~~~g~~~~A~~~~~~~~~~p~--~~~~~~l~-~~~~~~g~-----------~~~A~~~~~~~~~-------~~p~ 496 (589)
.+.-+...|++++|+.+|.-++ ..+ ....+.++ .+...... ...|..+.+.... ..+.
T Consensus 420 ~A~~~e~~g~~~dAi~Ly~La~-~~d~vl~lln~~Ls~~l~~~~~~~~~~s~~~~l~~la~~i~~~y~~~~~~~~~~~~~ 498 (613)
T PF04097_consen 420 AAREAEERGRFEDAILLYHLAE-EYDKVLSLLNRLLSQVLSQPSSSSLSDSERERLIELAKEILERYKSNPHISSKVSRK 498 (613)
T ss_dssp HHHHHHHCT-HHHHHHHHHHTT--HHHHHHHHHHHHHHHHHCSSTSSSSSTTTTSHHHHHHHHHHHHTTSHHHHTTS-HH
T ss_pred HHHHHHHCCCHHHHHHHHHHHh-hHHHHHHHHHHHHHHHHcCccccccccchhhhHHHHHHHHHHHHHhCcchHhhccHH
Confidence 3445667888888888888775 221 12233333 22222222 3344444433322 2222
Q ss_pred CCcchHHHHHH-----HhhcCChHHHHHHHHHhh
Q 007808 497 NPANFVMLSNI-----YGDLGRWKDVARIKVAMR 525 (589)
Q Consensus 497 ~~~~~~~l~~~-----~~~~g~~~~A~~~~~~~~ 525 (589)
+..++..|..+ +...|+|++|++.++++.
T Consensus 499 ~~~t~~~Ll~L~~ff~~~~~g~~~~AL~~i~~L~ 532 (613)
T PF04097_consen 499 NRETFQLLLDLAEFFDLYHAGQYEQALDIIEKLD 532 (613)
T ss_dssp HHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhCC
Confidence 33444444444 678999999999999884
No 427
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=55.36 E-value=2.2e+02 Score=28.26 Aligned_cols=172 Identities=9% Similarity=-0.072 Sum_probs=77.7
Q ss_pred HHHHhccCChHHHHHHHHHHHHhCCCCchHHHhHHHHHHHcCCChHHHHHHHccCCCCCeehHHHHHHHHHhCCCHHHHH
Q 007808 107 LKSCVKINALREGEELHCLVLKNGFRANIFVGTALIELYSTGKAIEAAYKVFGEMDERNVVVWTSMINGYISCGDIVSAR 186 (589)
Q Consensus 107 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 186 (589)
+.++...| ..+.+.+-..+... ++...+.....++....+......+.+.+..++.......+.++...+......
T Consensus 45 LdgL~~~G--~~a~~~L~~aL~~d--~~~ev~~~aa~al~~~~~~~~~~~L~~~L~d~~~~vr~aaa~ALg~i~~~~a~~ 120 (410)
T TIGR02270 45 VDGLVLAG--KAATELLVSALAEA--DEPGRVACAALALLAQEDALDLRSVLAVLQAGPEGLCAGIQAALGWLGGRQAEP 120 (410)
T ss_pred HHHHHHhh--HhHHHHHHHHHhhC--CChhHHHHHHHHHhccCChHHHHHHHHHhcCCCHHHHHHHHHHHhcCCchHHHH
Confidence 45555555 34555555554332 222333333333332222222444444454555556666666666666666555
Q ss_pred HHHHhCCCCChhHHHHHHHHHhcCCChHHHHHHhcccCCCChhhHHHHHHHHHhcCCHHHHHHHHhhCCCCCchhHHHHH
Q 007808 187 CLFELAPERDVILWNTIVSGYIDVRNMIEARKLFDQMPKKDVISWNTMLSGYANNGDVEECKRLFEEMPERNVFSWNGLI 266 (589)
Q Consensus 187 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~ 266 (589)
.+.......++......+.++...+. +-...+...+..++..+...-+.++...++.+..-.+..-....|...-..-+
T Consensus 121 ~L~~~L~~~~p~vR~aal~al~~r~~-~~~~~L~~~L~d~d~~Vra~A~raLG~l~~~~a~~~L~~al~d~~~~VR~aA~ 199 (410)
T TIGR02270 121 WLEPLLAASEPPGRAIGLAALGAHRH-DPGPALEAALTHEDALVRAAALRALGELPRRLSESTLRLYLRDSDPEVRFAAL 199 (410)
T ss_pred HHHHHhcCCChHHHHHHHHHHHhhcc-ChHHHHHHHhcCCCHHHHHHHHHHHHhhccccchHHHHHHHcCCCHHHHHHHH
Confidence 55555555555555455555444331 11111222222345555555555555555443333322222334444444444
Q ss_pred HHHHhCCChHHHHHHHHH
Q 007808 267 GGYANNGLFFEVLDAFKR 284 (589)
Q Consensus 267 ~~~~~~g~~~~A~~~~~~ 284 (589)
.+....|. .+|...+..
T Consensus 200 ~al~~lG~-~~A~~~l~~ 216 (410)
T TIGR02270 200 EAGLLAGS-RLAWGVCRR 216 (410)
T ss_pred HHHHHcCC-HhHHHHHHH
Confidence 45555555 444444444
No 428
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=55.06 E-value=17 Score=33.33 Aligned_cols=59 Identities=14% Similarity=0.245 Sum_probs=36.5
Q ss_pred hcCCHHHHHHHHhhC-CCCCC-HHHHHHHHHHHhcCCCHHHHHHHHHHHHccCCCCCcchH
Q 007808 444 RAGRLAEAVDFVKRM-PIEAD-AVIWANLLGSCRVYKNVELAELALERLTELEPKNPANFV 502 (589)
Q Consensus 444 ~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ 502 (589)
+.|+.++|..+|+.+ ...|+ +..+..+....-..++.-+|.++|-+++.+.|.|.+++.
T Consensus 128 ~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseALv 188 (472)
T KOG3824|consen 128 KDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEALV 188 (472)
T ss_pred hccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHHh
Confidence 667777777777765 34443 333333444444556777777777777777777665544
No 429
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=54.85 E-value=27 Score=30.79 Aligned_cols=54 Identities=20% Similarity=0.283 Sum_probs=27.8
Q ss_pred hcCCHHHHHHHHhhC-CCCC-CHHHHHHHHHHHhcCCCHHHHHHHHHHHHccCCCC
Q 007808 444 RAGRLAEAVDFVKRM-PIEA-DAVIWANLLGSCRVYKNVELAELALERLTELEPKN 497 (589)
Q Consensus 444 ~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~ 497 (589)
+.++.+.|.+++.++ ...| ....|-.+...-.+.|+.+.|.+.|++.++++|.+
T Consensus 7 ~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D 62 (287)
T COG4976 7 ESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPED 62 (287)
T ss_pred ccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCccc
Confidence 445555555555554 2222 33444444444455566666666666666655553
No 430
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=54.50 E-value=50 Score=28.68 Aligned_cols=51 Identities=20% Similarity=0.035 Sum_probs=35.7
Q ss_pred ccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHhhC
Q 007808 408 HMGLVEEGLSYFQSMAMDYSIVPQIEHYGCMVDLLARAGRLAEAVDFVKRM 458 (589)
Q Consensus 408 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 458 (589)
...+.+......+.+.+-....|++..|..++.++...|+.++|.+...++
T Consensus 120 ~~~~~~~l~~~~~~a~~~l~~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~ 170 (193)
T PF11846_consen 120 LPPDPEMLEAYIEWAERLLRRRPDPNVYQRYALALALLGDPEEARQWLARA 170 (193)
T ss_pred CCCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 555555555544444444456688888888888888888888888888777
No 431
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=53.91 E-value=34 Score=27.84 Aligned_cols=58 Identities=9% Similarity=0.043 Sum_probs=43.3
Q ss_pred cchHHHHHHHhhcCChHHHHHHHHHhhhCCCccCCccceeeeCCeeeeeccccCCCchHHHHHHHHHHHHcccCCCCcch
Q 007808 499 ANFVMLSNIYGDLGRWKDVARIKVAMRDTGFKKLPGCSSIEVNEVVMLGCLSRELDRKSIVRAEANMIKLLPQNNHPLTF 578 (589)
Q Consensus 499 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~ 578 (589)
......+......|++.-|.++.+.+. ..+|+|..+....+.++..+|...+....
T Consensus 71 d~vl~~A~~~~~~gd~~wA~~L~d~l~------------------------~adp~n~~ar~l~A~al~~lg~~~~~~~~ 126 (141)
T PF14863_consen 71 DKVLERAQAALAAGDYQWAAELLDHLV------------------------FADPDNEEARQLKADALEQLGYQSENANW 126 (141)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHH------------------------HH-TT-HHHHHHHHHHHHHHHHH-SSHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHH------------------------HcCCCcHHHHHHHHHHHHHHHHhccCHHH
Confidence 344555666778899999999999986 68899999999999999999988765544
Q ss_pred Hh
Q 007808 579 IV 580 (589)
Q Consensus 579 ~~ 580 (589)
-.
T Consensus 127 Rn 128 (141)
T PF14863_consen 127 RN 128 (141)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 432
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=53.64 E-value=1.8e+02 Score=26.71 Aligned_cols=29 Identities=21% Similarity=0.041 Sum_probs=20.6
Q ss_pred CChhHHHHHHHHHHhcCChHHHHHHHhhC
Q 007808 328 GNVCVGNALIDMYAKCGIIENAVDVFNSM 356 (589)
Q Consensus 328 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 356 (589)
.++.....+...|.+.|++.+|+.-|-.-
T Consensus 88 Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~~ 116 (260)
T PF04190_consen 88 GDPELHHLLAEKLWKEGNYYEAERHFLLG 116 (260)
T ss_dssp --HHHHHHHHHHHHHTT-HHHHHHHHHTS
T ss_pred CCHHHHHHHHHHHHhhccHHHHHHHHHhc
Confidence 46777888888899999888888766543
No 433
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=52.90 E-value=2.3e+02 Score=27.69 Aligned_cols=58 Identities=19% Similarity=0.248 Sum_probs=33.9
Q ss_pred HHHHHHHHHHhcCChHHHHHHHhhCCC------CCcchHHHHHHHHHhCCChHHHHHHHHHHHH
Q 007808 332 VGNALIDMYAKCGIIENAVDVFNSMDT------KDLITWNTIISGLAMHGRGAGALSLFHEMKN 389 (589)
Q Consensus 332 ~~~~l~~~~~~~g~~~~A~~~~~~~~~------~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~ 389 (589)
.+.-+.+-|..+|+++.|.+.|.+... .-+..|..+|..-...|+|........+...
T Consensus 152 a~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~s 215 (466)
T KOG0686|consen 152 ALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAES 215 (466)
T ss_pred HHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHh
Confidence 455566677777777777777766432 1223444455555555666666666555554
No 434
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=51.79 E-value=93 Score=22.76 Aligned_cols=39 Identities=10% Similarity=0.036 Sum_probs=27.7
Q ss_pred hcCChHHHHHHHhhCCCCCcchHHHHHHHHHhCCChHHHH
Q 007808 342 KCGIIENAVDVFNSMDTKDLITWNTIISGLAMHGRGAGAL 381 (589)
Q Consensus 342 ~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 381 (589)
..|+.+.|.+++..+. ..+..|...++++...|..+-|.
T Consensus 48 ~~g~~~~ar~LL~~L~-rg~~aF~~Fl~aLreT~~~~LA~ 86 (88)
T cd08819 48 NHGNESGARELLKRIV-QKEGWFSKFLQALRETEHHELAR 86 (88)
T ss_pred ccCcHHHHHHHHHHhc-cCCcHHHHHHHHHHHcCchhhhh
Confidence 4567777777777777 77777777777777777655443
No 435
>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]
Probab=51.50 E-value=1.4e+02 Score=28.27 Aligned_cols=119 Identities=13% Similarity=0.023 Sum_probs=78.4
Q ss_pred ChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHh------ccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHH
Q 007808 376 RGAGALSLFHEMKNAGEMPDGITFIGILCACT------HMGLVEEGLSYFQSMAMDYSIVPQIEHYGCMVDLLARAGRLA 449 (589)
Q Consensus 376 ~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~------~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 449 (589)
-.++++.++++....+ .|.+......|.++- ..-+|.....+|+.+. .+.|++..-.+-.-+..+..-.+
T Consensus 271 lI~eg~all~rA~~~~-~pGPYqlqAAIaa~HA~a~~aedtDW~~I~aLYdaL~---~~apSPvV~LNRAVAla~~~Gp~ 346 (415)
T COG4941 271 LIDEGLALLDRALASR-RPGPYQLQAAIAALHARARRAEDTDWPAIDALYDALE---QAAPSPVVTLNRAVALAMREGPA 346 (415)
T ss_pred HHHHHHHHHHHHHHcC-CCChHHHHHHHHHHHHhhcccCCCChHHHHHHHHHHH---HhCCCCeEeehHHHHHHHhhhHH
Confidence 3567888888888876 487777776666542 2246778888888774 34566443222233455555567
Q ss_pred HHHHHHhhCCCCC---CHHHHHH-HHHHHhcCCCHHHHHHHHHHHHccCCCCC
Q 007808 450 EAVDFVKRMPIEA---DAVIWAN-LLGSCRVYKNVELAELALERLTELEPKNP 498 (589)
Q Consensus 450 ~A~~~~~~~~~~p---~~~~~~~-l~~~~~~~g~~~~A~~~~~~~~~~~p~~~ 498 (589)
.++.+.+-+.-.| +...|.. -...+.+.|+.++|...|++++.+.++..
T Consensus 347 agLa~ve~L~~~~~L~gy~~~h~~RadlL~rLgr~~eAr~aydrAi~La~~~a 399 (415)
T COG4941 347 AGLAMVEALLARPRLDGYHLYHAARADLLARLGRVEEARAAYDRAIALARNAA 399 (415)
T ss_pred hHHHHHHHhhcccccccccccHHHHHHHHHHhCChHHHHHHHHHHHHhcCChH
Confidence 7777777764343 2222333 33667899999999999999999888743
No 436
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=50.86 E-value=3.7e+02 Score=29.41 Aligned_cols=218 Identities=14% Similarity=-0.001 Sum_probs=111.0
Q ss_pred HhcCCHHHHHHHHhhCCC----CCc-------hhHHHHHH-HHHhCCChHHHHHHHHHHHHcC---CCCCcHHHHHHHHH
Q 007808 239 ANNGDVEECKRLFEEMPE----RNV-------FSWNGLIG-GYANNGLFFEVLDAFKRMLTEG---RVFPNDATIVTVLS 303 (589)
Q Consensus 239 ~~~~~~~~A~~~~~~~~~----~~~-------~~~~~l~~-~~~~~g~~~~A~~~~~~~~~~~---~~~p~~~~~~~l~~ 303 (589)
....++++|..++.++.. |+. ..|+.|-. .....|++++|.++.+.....= ...+....+..+..
T Consensus 426 ~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~ 505 (894)
T COG2909 426 ASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGE 505 (894)
T ss_pred HHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhH
Confidence 446788888887776542 322 23444432 3456788899998888776642 12233445666667
Q ss_pred HHHhcCChhHHHHHHHHHHHcCCCCChhHHHH---H--HHHHHhcCChH--HHHHHHhhCC-----CCCc-----chHHH
Q 007808 304 ACARLGALDFSKWVHVYAEYNGYQGNVCVGNA---L--IDMYAKCGIIE--NAVDVFNSMD-----TKDL-----ITWNT 366 (589)
Q Consensus 304 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~---l--~~~~~~~g~~~--~A~~~~~~~~-----~~~~-----~~~~~ 366 (589)
+..-.|++++|..+.....+..-.-+...+.. + ...+..+|+.. +.+..|.... .... .++..
T Consensus 506 a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~~ 585 (894)
T COG2909 506 AAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRAQ 585 (894)
T ss_pred HHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHH
Confidence 77788899999888877666532233333322 2 23345566322 2233333222 1122 23333
Q ss_pred HHHHHHhC-CChHHHHHHHHHHHHCCCCCCHhH--HHHHHHHHhccCcHHHHHHHHHHhHHhcCCCC----ChHHHHHHH
Q 007808 367 IISGLAMH-GRGAGALSLFHEMKNAGEMPDGIT--FIGILCACTHMGLVEEGLSYFQSMAMDYSIVP----QIEHYGCMV 439 (589)
Q Consensus 367 l~~~~~~~-~~~~~A~~~~~~m~~~~~~p~~~~--~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~----~~~~~~~l~ 439 (589)
+..++.+. +...++..-+.........|-... +..|+......|++++|...+.++..- ...+ +-..-...+
T Consensus 586 ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l-~~~~~~~~~~~a~~~~v 664 (894)
T COG2909 586 LLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERL-LLNGQYHVDYLAAAYKV 664 (894)
T ss_pred HHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH-hcCCCCCchHHHHHHHh
Confidence 44444431 222223223332222222222222 225667777889999998888877432 2222 111111122
Q ss_pred --HHHHhcCCHHHHHHHHhh
Q 007808 440 --DLLARAGRLAEAVDFVKR 457 (589)
Q Consensus 440 --~~~~~~g~~~~A~~~~~~ 457 (589)
......|+.+.|.....+
T Consensus 665 ~~~lwl~qg~~~~a~~~l~~ 684 (894)
T COG2909 665 KLILWLAQGDKELAAEWLLK 684 (894)
T ss_pred hHHHhcccCCHHHHHHHHHh
Confidence 223456777777766655
No 437
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=50.74 E-value=50 Score=29.54 Aligned_cols=60 Identities=7% Similarity=-0.058 Sum_probs=45.9
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHc--------cCCCCC----------cchHHHHHHHhhcCChHHHHHHHHHhh
Q 007808 466 IWANLLGSCRVYKNVELAELALERLTE--------LEPKNP----------ANFVMLSNIYGDLGRWKDVARIKVAMR 525 (589)
Q Consensus 466 ~~~~l~~~~~~~g~~~~A~~~~~~~~~--------~~p~~~----------~~~~~l~~~~~~~g~~~~A~~~~~~~~ 525 (589)
+...-.+-+.+.|++.+|...|+.++. -.|.++ ..+.+...++...|++-++++.-.++.
T Consensus 180 ~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~seiL 257 (329)
T KOG0545|consen 180 VLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEIL 257 (329)
T ss_pred HHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHH
Confidence 344445667889999999999988865 235543 356678888999999999999888884
No 438
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=50.63 E-value=1e+02 Score=22.80 Aligned_cols=61 Identities=20% Similarity=0.028 Sum_probs=36.4
Q ss_pred CHHHHHHHHHHHhcCCCHHHHHHHHHHHHccCCCC--CcchHHHHHHHhhcCChH-HHHHHHHH
Q 007808 463 DAVIWANLLGSCRVYKNVELAELALERLTELEPKN--PANFVMLSNIYGDLGRWK-DVARIKVA 523 (589)
Q Consensus 463 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~--~~~~~~l~~~~~~~g~~~-~A~~~~~~ 523 (589)
|...-..+...+...|++++|.+.+-.+++.+|+. ..+...++.++.-.|.-+ .+.++-.+
T Consensus 21 D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~~~plv~~~RRk 84 (90)
T PF14561_consen 21 DLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGPGDPLVSEYRRK 84 (90)
T ss_dssp -HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-TT-HHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCCCChHHHHHHHH
Confidence 44555556677778888888888888888776543 556667777777777643 33333333
No 439
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=50.30 E-value=2.5e+02 Score=28.77 Aligned_cols=24 Identities=38% Similarity=0.695 Sum_probs=18.2
Q ss_pred HHHHHHHHhcCChHHHHHHHhhCC
Q 007808 334 NALIDMYAKCGIIENAVDVFNSMD 357 (589)
Q Consensus 334 ~~l~~~~~~~g~~~~A~~~~~~~~ 357 (589)
..++.-|.+.+++++|..++..|.
T Consensus 412 ~eL~~~yl~~~qi~eAi~lL~smn 435 (545)
T PF11768_consen 412 VELISQYLRCDQIEEAINLLLSMN 435 (545)
T ss_pred HHHHHHHHhcCCHHHHHHHHHhCC
Confidence 346667888888888888887775
No 440
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=49.32 E-value=37 Score=22.90 Aligned_cols=25 Identities=16% Similarity=0.433 Sum_probs=13.3
Q ss_pred HHHHHHHHhccCcHHHHHHHHHHhH
Q 007808 399 FIGILCACTHMGLVEEGLSYFQSMA 423 (589)
Q Consensus 399 ~~~l~~~~~~~g~~~~A~~~~~~~~ 423 (589)
-..++.++...|++++|.++++.+.
T Consensus 26 hLqvI~gllqlg~~~~a~eYi~~~~ 50 (62)
T PF14689_consen 26 HLQVIYGLLQLGKYEEAKEYIKELS 50 (62)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 3445555555566666665555554
No 441
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=48.34 E-value=2.1e+02 Score=25.86 Aligned_cols=162 Identities=12% Similarity=0.045 Sum_probs=85.6
Q ss_pred HHHHHHHhCCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHh-ccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHh
Q 007808 366 TIISGLAMHGRGAGALSLFHEMKNAGEMPDGITFIGILCACT-HMGLVEEGLSYFQSMAMDYSIVPQIEHYGCMVDLLAR 444 (589)
Q Consensus 366 ~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~-~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 444 (589)
-++...-+.|+++++...++++...+...+..-.+.+..+|- ..|....+++++..+..+..-..+ .....++.-|.+
T Consensus 6 ~~Aklaeq~eRy~dmv~~mk~~~~~~~eLt~eERnLlsvayKn~i~~~R~s~R~l~~~e~~~~~~~~-~~~~~~i~~yk~ 84 (236)
T PF00244_consen 6 YLAKLAEQAERYDDMVEYMKQLIEMNPELTEEERNLLSVAYKNVIGSRRASWRILSSIEQKEENKGN-EKQVKLIKDYKK 84 (236)
T ss_dssp HHHHHHHHTTHHHHHHHHHHHHHHTSS---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhccccchHHHHhhhhHhhhhcccch-hHHHHHHHHHHH
Confidence 356667788999999999999998776667666666666653 335555666666655443222222 222223322221
Q ss_pred c------CCHHHHHHHHhhCC----CCCCHHHHHHHHHH-----Hhc--CC-----CHHHHHHHHHHHHc-----cCCCC
Q 007808 445 A------GRLAEAVDFVKRMP----IEADAVIWANLLGS-----CRV--YK-----NVELAELALERLTE-----LEPKN 497 (589)
Q Consensus 445 ~------g~~~~A~~~~~~~~----~~p~~~~~~~l~~~-----~~~--~g-----~~~~A~~~~~~~~~-----~~p~~ 497 (589)
. .--.+.+.+++..- ..+....|-.-+.+ .+. .| -.+.|.+.|+++.+ +.|.+
T Consensus 85 kie~EL~~~C~eii~lId~~Lip~~~~~eskvfy~KmkgDyyRYlaE~~~~~~~~~~~~~a~~aY~~A~~~a~~~L~~~~ 164 (236)
T PF00244_consen 85 KIEDELIDICNEIIRLIDKSLIPSATSPESKVFYYKMKGDYYRYLAEFDSGDEKKEAAEKALEAYEEALEIAKKELPPTH 164 (236)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCHHHS-SHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHHHHHHHHHHSCTTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHhccccccccccccchhhHHHHHHHHHhhhhHHHHHhcccCCCC
Confidence 1 11234555555541 12223332222211 111 22 24678888888776 56776
Q ss_pred CcchHH---HHH-HHhhcCChHHHHHHHHHhhhCC
Q 007808 498 PANFVM---LSN-IYGDLGRWKDVARIKVAMRDTG 528 (589)
Q Consensus 498 ~~~~~~---l~~-~~~~~g~~~~A~~~~~~~~~~~ 528 (589)
|.-+-. .+. .|.-.|+.++|.++.++..+..
T Consensus 165 p~rLgl~LN~svF~yei~~~~~~A~~ia~~afd~a 199 (236)
T PF00244_consen 165 PLRLGLALNYSVFYYEILNDPEKAIEIAKQAFDEA 199 (236)
T ss_dssp HHHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Confidence 642222 222 2456899999999988875443
No 442
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=48.32 E-value=84 Score=24.23 Aligned_cols=100 Identities=12% Similarity=0.079 Sum_probs=49.8
Q ss_pred HHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHhcCCCHHHH
Q 007808 404 CACTHMGLVEEGLSYFQSMAMDYSIVPQIEHYGCMVDLLARAGRLAEAVDFVKRMPIEADAVIWANLLGSCRVYKNVELA 483 (589)
Q Consensus 404 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A 483 (589)
..+...|+.-+|+++.++++..+|-..+..... ..+|..= .++-.+. .+||...- -.-.+
T Consensus 4 ~~~~~rGnhiKAL~iied~i~~h~~~~~~~~lh------~~QG~if--~~lA~~t-en~d~k~~-----------yLl~s 63 (111)
T PF04781_consen 4 KDYFARGNHIKALEIIEDLISRHGEDESSWLLH------RLQGTIF--YKLAKKT-ENPDVKFR-----------YLLGS 63 (111)
T ss_pred HHHHHccCHHHHHHHHHHHHHHccCCCchHHHH------HHHhHHH--HHHHHhc-cCchHHHH-----------HHHHh
Confidence 445667888888888888776555433321111 1111110 0000111 13433221 12246
Q ss_pred HHHHHHHHccCCCCCcchHHHHHHHhhcCChHHHHHHHHH
Q 007808 484 ELALERLTELEPKNPANFVMLSNIYGDLGRWKDVARIKVA 523 (589)
Q Consensus 484 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 523 (589)
.+.+.+...+.|+....+..|++-+....-|+++.+--++
T Consensus 64 ve~~s~a~~Lsp~~A~~L~~la~~l~s~~~Ykk~v~kak~ 103 (111)
T PF04781_consen 64 VECFSRAVELSPDSAHSLFELASQLGSVKYYKKAVKKAKR 103 (111)
T ss_pred HHHHHHHhccChhHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 6777888888887655555555555545555555554443
No 443
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=47.78 E-value=2e+02 Score=25.55 Aligned_cols=107 Identities=10% Similarity=0.034 Sum_probs=62.4
Q ss_pred HHHHHHHHHCCCCCCHhHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCC---ChHHHH--HHHHHHHhcCCHHHHHHHH
Q 007808 381 LSLFHEMKNAGEMPDGITFIGILCACTHMGLVEEGLSYFQSMAMDYSIVP---QIEHYG--CMVDLLARAGRLAEAVDFV 455 (589)
Q Consensus 381 ~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~--~l~~~~~~~g~~~~A~~~~ 455 (589)
.++.+++.. +.+...-++.|+--|.-...+.+|.+.|..- .++.| +...++ .-|......|+.++|++..
T Consensus 13 ~~w~~~~~~--~~~~~~d~n~LVmnylv~eg~~EaA~~Fa~e---~~i~~~~~d~~~~~eR~~Ir~~I~~G~Ie~Aie~i 87 (228)
T KOG2659|consen 13 EEWEEQLMK--VSVMREDLNRLVMNYLVHEGYVEAAEKFAKE---SGIKPPSIDLDSMDERLQIRRAIEEGQIEEAIEKV 87 (228)
T ss_pred hhhHHHHhc--cCcchhhHHHHHHHHHHhccHHHHHHHhccc---cCCCCccCchhhHhHHHHHHHHHHhccHHHHHHHH
Confidence 344444444 5666667777776666555555566555433 26655 233332 3456678889999999888
Q ss_pred hhCC---CCCCHHHHHHHH----HHHhcCCCHHHHHHHHHHHHc
Q 007808 456 KRMP---IEADAVIWANLL----GSCRVYKNVELAELALERLTE 492 (589)
Q Consensus 456 ~~~~---~~p~~~~~~~l~----~~~~~~g~~~~A~~~~~~~~~ 492 (589)
.... +.-|...+-.+. --+.+.|..++|+++.+.-+.
T Consensus 88 n~l~PeiLd~n~~l~F~Lq~q~lIEliR~~~~eeal~F~q~~LA 131 (228)
T KOG2659|consen 88 NQLNPEILDTNRELFFHLQQLHLIELIREGKTEEALEFAQTKLA 131 (228)
T ss_pred HHhChHHHccchhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHcc
Confidence 8872 333332222222 224677788888887766544
No 444
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=47.57 E-value=1.9e+02 Score=30.13 Aligned_cols=86 Identities=14% Similarity=0.151 Sum_probs=62.7
Q ss_pred hccCcHHHHHHHHHHhHHhcCCCCC------hHHHHHHHHHHHhcCCHHHHHHHHhhC-CCCC-CHHHHHHHHHHHhcCC
Q 007808 407 THMGLVEEGLSYFQSMAMDYSIVPQ------IEHYGCMVDLLARAGRLAEAVDFVKRM-PIEA-DAVIWANLLGSCRVYK 478 (589)
Q Consensus 407 ~~~g~~~~A~~~~~~~~~~~~~~~~------~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g 478 (589)
.+..++..+.+.|..-.+. ++.| ......|.-+|.+..+.++|.++++++ ..+| ++.+--.+..+....|
T Consensus 365 F~~~~Y~~s~~~y~~Sl~~--i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~l~q~~~~~~~~~E~ 442 (872)
T KOG4814|consen 365 FKMEKYVVSIRFYKLSLKD--IISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQSPLCQLLMLQSFLAED 442 (872)
T ss_pred HHHHHHHHHHHHHHHHHHh--ccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHhc
Confidence 4557888888888876552 2222 234556777899999999999999999 4555 3444444557788899
Q ss_pred CHHHHHHHHHHHHccC
Q 007808 479 NVELAELALERLTELE 494 (589)
Q Consensus 479 ~~~~A~~~~~~~~~~~ 494 (589)
.-++|...........
T Consensus 443 ~Se~AL~~~~~~~s~~ 458 (872)
T KOG4814|consen 443 KSEEALTCLQKIKSSE 458 (872)
T ss_pred chHHHHHHHHHHHhhh
Confidence 9999999998887744
No 445
>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain. These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....
Probab=47.19 E-value=89 Score=22.54 Aligned_cols=17 Identities=18% Similarity=0.171 Sum_probs=8.9
Q ss_pred HHccCChhHHHHHhhcC
Q 007808 44 CAQLKQMTYARKMFDKI 60 (589)
Q Consensus 44 ~~~~~~~~~A~~~~~~~ 60 (589)
.++.|+++-...+++.-
T Consensus 4 A~~~~~~~~~~~ll~~~ 20 (89)
T PF12796_consen 4 AAQNGNLEILKFLLEKG 20 (89)
T ss_dssp HHHTTTHHHHHHHHHTT
T ss_pred HHHcCCHHHHHHHHHCc
Confidence 34455555555555533
No 446
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=46.86 E-value=1.3e+02 Score=23.12 Aligned_cols=27 Identities=15% Similarity=0.439 Sum_probs=19.9
Q ss_pred cHHHHHHHHHcCCChhHHHHHHHHhhh
Q 007808 67 SWNAMFNGYAQNEFHRTVVVLFTQMKK 93 (589)
Q Consensus 67 ~~~~ll~~~~~~~~~~~a~~~~~~m~~ 93 (589)
-|..++.-|...|..++|++++.+...
T Consensus 41 ~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 41 KYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 477777777777777777777777665
No 447
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=46.50 E-value=1.9e+02 Score=24.80 Aligned_cols=65 Identities=17% Similarity=0.176 Sum_probs=39.2
Q ss_pred HHHHHHHHHHhHHhcCCCCC-hHH-----HHHHHHHHHhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHhc
Q 007808 412 VEEGLSYFQSMAMDYSIVPQ-IEH-----YGCMVDLLARAGRLAEAVDFVKRMPIEADAVIWANLLGSCRV 476 (589)
Q Consensus 412 ~~~A~~~~~~~~~~~~~~~~-~~~-----~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~ 476 (589)
++.|+.+|+.+.++...+-+ ... --..+-.|.+.|.+++|.+++++.-.+|+......-+....+
T Consensus 85 LESAl~v~~~I~~E~~~~~~lhe~i~~lik~~aV~VCm~~g~Fk~A~eiLkr~~~d~~~~~~r~kL~~II~ 155 (200)
T cd00280 85 LESALMVLESIEKEFSLPETLHEEIRKLIKEQAVAVCMENGEFKKAEEVLKRLFSDPESQKLRMKLLMIIR 155 (200)
T ss_pred HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHhcCCCchhHHHHHHHHHH
Confidence 56778888877655332111 111 123345688999999999999988446666555444444333
No 448
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=46.24 E-value=2.5e+02 Score=26.04 Aligned_cols=190 Identities=13% Similarity=0.079 Sum_probs=83.0
Q ss_pred HHHHHHhcCCHHHHHHHHhhCCCC----C-------chhHHHHHHHHHhCCChHHHHHHHHH---HHHcCCCCC-cHHHH
Q 007808 234 MLSGYANNGDVEECKRLFEEMPER----N-------VFSWNGLIGGYANNGLFFEVLDAFKR---MLTEGRVFP-NDATI 298 (589)
Q Consensus 234 l~~~~~~~~~~~~A~~~~~~~~~~----~-------~~~~~~l~~~~~~~g~~~~A~~~~~~---~~~~~~~~p-~~~~~ 298 (589)
+.+-..+.+++++|+..|.++... + ..+...+...|...|++..--+.... ....- ..| .....
T Consensus 9 ~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~m~~f-tk~k~~Kii 87 (421)
T COG5159 9 LANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSREAMEDF-TKPKITKII 87 (421)
T ss_pred HHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHh-cchhHHHHH
Confidence 444555666777777777766542 1 12344455666666665554443322 11111 111 22234
Q ss_pred HHHHHHHHhc-CChhHHHHHHHHHHHcCCCCC-----hhHHHHHHHHHHhcCChHHHHHHHhhCC--------CCCcchH
Q 007808 299 VTVLSACARL-GALDFSKWVHVYAEYNGYQGN-----VCVGNALIDMYAKCGIIENAVDVFNSMD--------TKDLITW 364 (589)
Q Consensus 299 ~~l~~~~~~~-~~~~~a~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~--------~~~~~~~ 364 (589)
.+++.-+... ..++....+....++....-. ...-..++..+.+.|.+.+|+.+.+.+. +++..+.
T Consensus 88 rtLiekf~~~~dsl~dqi~v~~~~iewA~rEkr~fLr~~Le~Kli~l~y~~~~YsdalalIn~ll~ElKk~DDK~~Li~v 167 (421)
T COG5159 88 RTLIEKFPYSSDSLEDQIKVLTALIEWADREKRKFLRLELECKLIYLLYKTGKYSDALALINPLLHELKKYDDKINLITV 167 (421)
T ss_pred HHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhhcCccceeeh
Confidence 4444443322 234444444443333221111 1122345666666777777666554332 1222211
Q ss_pred HHH-HHHHHhCCChHHHHHHHHHHHHC----CCCCCHhHHHHHHHH--HhccCcHHHHHHHHHHhHH
Q 007808 365 NTI-ISGLAMHGRGAGALSLFHEMKNA----GEMPDGITFIGILCA--CTHMGLVEEGLSYFQSMAM 424 (589)
Q Consensus 365 ~~l-~~~~~~~~~~~~A~~~~~~m~~~----~~~p~~~~~~~l~~~--~~~~g~~~~A~~~~~~~~~ 424 (589)
..+ -.+|-...+..++..-+...+.. -++|-...-.-|+++ .+...++..|..+|-+..+
T Consensus 168 hllESKvyh~irnv~KskaSLTaArt~Ans~YCPpqlqa~lDL~sGIlhcdd~dyktA~SYF~Ea~E 234 (421)
T COG5159 168 HLLESKVYHEIRNVSKSKASLTAARTLANSAYCPPQLQAQLDLLSGILHCDDRDYKTASSYFIEALE 234 (421)
T ss_pred hhhhHHHHHHHHhhhhhhhHHHHHHHHhhccCCCHHHHHHHHHhccceeeccccchhHHHHHHHHHh
Confidence 111 12344444444444444333221 123332222233332 2344567777777766655
No 449
>PF02184 HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107 The HAT (Half A TPR) repeat has a repetitive pattern characterised by three aromatic residues with a conserved spacing. They are structurally and sequentially similar to TPRs (tetratricopeptide repeats), though they lack the highly conserved alanine and glycine residues found in TPRs. The number of HAT repeats found in different proteins varies between 9 and 12. HAT-repeat-containing proteins appear to be components of macromolecular complexes that are required for RNA processing []. The repeats may be involved in protein-protein interactions. The HAT motif has striking structural similarities to HEAT repeats (IPR000357 from INTERPRO), being of a similar length and consisting of two short helices connected by a loop domain, as in HEAT repeats.; GO: 0006396 RNA processing, 0005622 intracellular
Probab=45.82 E-value=43 Score=19.07 Aligned_cols=27 Identities=19% Similarity=0.356 Sum_probs=19.2
Q ss_pred CHHHHHHHHHHHHccCCCCCcchHHHHH
Q 007808 479 NVELAELALERLTELEPKNPANFVMLSN 506 (589)
Q Consensus 479 ~~~~A~~~~~~~~~~~p~~~~~~~~l~~ 506 (589)
.++.|..+|++.+...|+ +..|...+.
T Consensus 2 E~dRAR~IyeR~v~~hp~-~k~WikyAk 28 (32)
T PF02184_consen 2 EFDRARSIYERFVLVHPE-VKNWIKYAK 28 (32)
T ss_pred hHHHHHHHHHHHHHhCCC-chHHHHHHH
Confidence 467888888888888776 666655443
No 450
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=45.66 E-value=40 Score=20.06 Aligned_cols=27 Identities=7% Similarity=-0.010 Sum_probs=22.2
Q ss_pred cchHHHHHHHhhcCChHHHHHHHHHhh
Q 007808 499 ANFVMLSNIYGDLGRWKDVARIKVAMR 525 (589)
Q Consensus 499 ~~~~~l~~~~~~~g~~~~A~~~~~~~~ 525 (589)
.+|..|+.+-...++|++|.+-+++..
T Consensus 2 dv~~~Lgeisle~e~f~qA~~D~~~aL 28 (38)
T PF10516_consen 2 DVYDLLGEISLENENFEQAIEDYEKAL 28 (38)
T ss_pred cHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 467888999999999999988877764
No 451
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=45.34 E-value=3.1e+02 Score=26.92 Aligned_cols=58 Identities=14% Similarity=0.142 Sum_probs=34.7
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHhhCCC------CCchhHHHHHHHHHhCCChHHHHHHHHHHHH
Q 007808 230 SWNTMLSGYANNGDVEECKRLFEEMPE------RNVFSWNGLIGGYANNGLFFEVLDAFKRMLT 287 (589)
Q Consensus 230 ~~~~l~~~~~~~~~~~~A~~~~~~~~~------~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 287 (589)
.+.-+.+.|..+|+++.|.+.|.+... ..+..|-.+|..-.-.|+|.....+..+...
T Consensus 152 a~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~s 215 (466)
T KOG0686|consen 152 ALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAES 215 (466)
T ss_pred HHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHh
Confidence 345566667777777777777776543 1223455555555666676666666655544
No 452
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=45.25 E-value=1e+02 Score=25.24 Aligned_cols=63 Identities=13% Similarity=0.028 Sum_probs=42.0
Q ss_pred HHHHHhhhCCCCCCcccHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchHHHhHHHHHHHcCC
Q 007808 86 VLFTQMKKLDAMPNCFTFPIVLKSCVKINALREGEELHCLVLKNGFRANIFVGTALIELYSTGK 149 (589)
Q Consensus 86 ~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 149 (589)
++.+.+++.|++++..- ..++..+...++.-.|.++|+++.+.++..+..|--.-++.+...|
T Consensus 7 ~~~~~lk~~glr~T~qR-~~vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~G 69 (145)
T COG0735 7 DAIERLKEAGLRLTPQR-LAVLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEEAG 69 (145)
T ss_pred HHHHHHHHcCCCcCHHH-HHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHCC
Confidence 34556677787766553 3456667677777889999999998887665554333455565555
No 453
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=45.23 E-value=45 Score=30.92 Aligned_cols=77 Identities=8% Similarity=0.065 Sum_probs=51.4
Q ss_pred CCCHhHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHH-HHHHHHhcCCHHHHHHHHhhC-CCCC-CHHHHHH
Q 007808 393 MPDGITFIGILCACTHMGLVEEGLSYFQSMAMDYSIVPQIEHYGC-MVDLLARAGRLAEAVDFVKRM-PIEA-DAVIWAN 469 (589)
Q Consensus 393 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ 469 (589)
..|...|...+....+.|.+.+.-.++.++.+.+ +.|+..|-. -..-|.-.++++.+..+|.+. ...| ++..|..
T Consensus 104 f~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~kh--P~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~p~iw~e 181 (435)
T COG5191 104 FNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKH--PLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSRSPRIWIE 181 (435)
T ss_pred CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--CCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCCCchHHHH
Confidence 3355666666666667788888899998888743 445555543 334567788999999998876 4444 4455654
Q ss_pred HH
Q 007808 470 LL 471 (589)
Q Consensus 470 l~ 471 (589)
..
T Consensus 182 yf 183 (435)
T COG5191 182 YF 183 (435)
T ss_pred HH
Confidence 44
No 454
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=45.10 E-value=66 Score=20.31 Aligned_cols=32 Identities=16% Similarity=0.178 Sum_probs=20.9
Q ss_pred ccCChHHHHHHHHHHHHhCCCCchHHHhHHHH
Q 007808 112 KINALREGEELHCLVLKNGFRANIFVGTALIE 143 (589)
Q Consensus 112 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 143 (589)
+.|-..++..+++.|.+.|+-.+...+..+++
T Consensus 14 ~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~ 45 (48)
T PF11848_consen 14 RRGLISEVKPLLDRLQQAGFRISPKLIEEILR 45 (48)
T ss_pred HcCChhhHHHHHHHHHHcCcccCHHHHHHHHH
Confidence 55666677777777777776666666665543
No 455
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=44.68 E-value=2.5e+02 Score=28.88 Aligned_cols=24 Identities=4% Similarity=-0.056 Sum_probs=12.6
Q ss_pred cchHHHHHHHHccCChhHHHHHhh
Q 007808 35 YITPRIITACAQLKQMTYARKMFD 58 (589)
Q Consensus 35 ~~~~~l~~~~~~~~~~~~A~~~~~ 58 (589)
.+...+..++...|+.+.|..+.+
T Consensus 285 dsLLqva~~~r~qgD~e~aadLie 308 (665)
T KOG2422|consen 285 DSLLQVADIFRFQGDREMAADLIE 308 (665)
T ss_pred hHHHHHHHHHHHhcchhhHHHHHH
Confidence 334444555556666655555444
No 456
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=44.52 E-value=31 Score=36.76 Aligned_cols=47 Identities=23% Similarity=0.388 Sum_probs=25.5
Q ss_pred HhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHc
Q 007808 443 ARAGRLAEAVDFVKRMPIEADAVIWANLLGSCRVYKNVELAELALERLTE 492 (589)
Q Consensus 443 ~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 492 (589)
..+|+++.|++.-+++. +..+|..|......+|+.+-|+..|++...
T Consensus 654 Le~gnle~ale~akkld---d~d~w~rLge~Al~qgn~~IaEm~yQ~~kn 700 (1202)
T KOG0292|consen 654 LECGNLEVALEAAKKLD---DKDVWERLGEEALRQGNHQIAEMCYQRTKN 700 (1202)
T ss_pred hhcCCHHHHHHHHHhcC---cHHHHHHHHHHHHHhcchHHHHHHHHHhhh
Confidence 35555555555555543 344555555555555555555555555443
No 457
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=43.97 E-value=2.4e+02 Score=25.18 Aligned_cols=96 Identities=18% Similarity=0.198 Sum_probs=59.4
Q ss_pred CcchHHHHHHHHHhCCChHHHHHHHHHHHHCCCCC---CHhHH--HHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHH
Q 007808 360 DLITWNTIISGLAMHGRGAGALSLFHEMKNAGEMP---DGITF--IGILCACTHMGLVEEGLSYFQSMAMDYSIVPQIEH 434 (589)
Q Consensus 360 ~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p---~~~~~--~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 434 (589)
...-.|.|+--|.-...+.+|.+.|.. +.|+.| +..++ ..-|......|+.+.|.+....+... -+.-|...
T Consensus 25 ~~~d~n~LVmnylv~eg~~EaA~~Fa~--e~~i~~~~~d~~~~~eR~~Ir~~I~~G~Ie~Aie~in~l~Pe-iLd~n~~l 101 (228)
T KOG2659|consen 25 MREDLNRLVMNYLVHEGYVEAAEKFAK--ESGIKPPSIDLDSMDERLQIRRAIEEGQIEEAIEKVNQLNPE-ILDTNREL 101 (228)
T ss_pred chhhHHHHHHHHHHhccHHHHHHHhcc--ccCCCCccCchhhHhHHHHHHHHHHhccHHHHHHHHHHhChH-HHccchhH
Confidence 334566777767766667777777654 445655 33333 33456678899999999998877432 22333222
Q ss_pred HHHH----HHHHHhcCCHHHHHHHHhhC
Q 007808 435 YGCM----VDLLARAGRLAEAVDFVKRM 458 (589)
Q Consensus 435 ~~~l----~~~~~~~g~~~~A~~~~~~~ 458 (589)
+-.| +--+.+.|..++|+++.+.-
T Consensus 102 ~F~Lq~q~lIEliR~~~~eeal~F~q~~ 129 (228)
T KOG2659|consen 102 FFHLQQLHLIELIREGKTEEALEFAQTK 129 (228)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 2111 12356888999999988754
No 458
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=43.93 E-value=29 Score=27.68 Aligned_cols=32 Identities=25% Similarity=0.439 Sum_probs=24.4
Q ss_pred hCCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHH
Q 007808 373 MHGRGAGALSLFHEMKNAGEMPDGITFIGILCAC 406 (589)
Q Consensus 373 ~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~ 406 (589)
..|.-..|..+|++|+++|-+||. |+.|+..+
T Consensus 107 ~ygsk~DaY~VF~kML~~G~pPdd--W~~Ll~~a 138 (140)
T PF11663_consen 107 AYGSKTDAYAVFRKMLERGNPPDD--WDALLKEA 138 (140)
T ss_pred hhccCCcHHHHHHHHHhCCCCCcc--HHHHHHHh
Confidence 346667799999999999998875 55666543
No 459
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=43.54 E-value=3.6e+02 Score=27.20 Aligned_cols=422 Identities=13% Similarity=0.067 Sum_probs=0.0
Q ss_pred HHHHHhccC--ChHHHHHHHHHHHHhCCCCchHH-----HhHHHHHHHcC-----CChHHHHHHHccCCC---CCeehHH
Q 007808 106 VLKSCVKIN--ALREGEELHCLVLKNGFRANIFV-----GTALIELYSTG-----KAIEAAYKVFGEMDE---RNVVVWT 170 (589)
Q Consensus 106 ll~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~-----~~~li~~~~~~-----g~~~~A~~~~~~~~~---~~~~~~~ 170 (589)
+...+...+ +...+++.++......++.-+.. ...++-.|.++ ...++|..+.+.++. -.-.+++
T Consensus 13 lAe~~rt~~PPkIkk~IkClqA~~~~~is~~veart~LqLg~lL~~yT~N~elAksHLekA~~i~~~ip~fydvKf~a~S 92 (629)
T KOG2300|consen 13 LAEHFRTSGPPKIKKCIKCLQAIFQFQISFLVEARTHLQLGALLLRYTKNVELAKSHLEKAWLISKSIPSFYDVKFQAAS 92 (629)
T ss_pred HHHHHhhcCChhHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHcccccHHhhhhHHHH
Q ss_pred HHHHHHHhCC-CHHHHHHHHHhCCCC-------ChhHHHHHHHHHhcCCChHHHHHHhcccCC---CChhhHHHHHHHHH
Q 007808 171 SMINGYISCG-DIVSARCLFELAPER-------DVILWNTIVSGYIDVRNMIEARKLFDQMPK---KDVISWNTMLSGYA 239 (589)
Q Consensus 171 ~l~~~~~~~g-~~~~a~~~~~~~~~~-------~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~ 239 (589)
.|...|.... .+..+..+++...+. .-.....++....-..++..|.+++.---+ +-...|.-++-.+.
T Consensus 93 lLa~lh~~~~~s~~~~KalLrkaielsq~~p~wsckllfQLaql~~idkD~~sA~elLavga~sAd~~~~~ylr~~ftls 172 (629)
T KOG2300|consen 93 LLAHLHHQLAQSFPPAKALLRKAIELSQSVPYWSCKLLFQLAQLHIIDKDFPSALELLAVGAESADHICFPYLRMLFTLS 172 (629)
T ss_pred HHHHHHHHhcCCCchHHHHHHHHHHHhcCCchhhHHHHHHHHHHHhhhccchhHHHHHhccccccchhhhHHHHHHHHHH
Q ss_pred h---------cCCHHHHHHHHhhCCC-----------CCchhHHHHHHHHHhCCChHHHHHHHHHHHHc-----------
Q 007808 240 N---------NGDVEECKRLFEEMPE-----------RNVFSWNGLIGGYANNGLFFEVLDAFKRMLTE----------- 288 (589)
Q Consensus 240 ~---------~~~~~~A~~~~~~~~~-----------~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----------- 288 (589)
+ ..+++.+.....++.+ -.+.-.+.-+.-|...|+...+...++++.+.
T Consensus 173 ~~~ll~me~d~~dV~~ll~~~~qi~~n~~sdk~~~E~LkvFyl~lql~yy~~~gq~rt~k~~lkQLQ~siqtist~~~~h 252 (629)
T KOG2300|consen 173 MLMLLIMERDDYDVEKLLQRCGQIWQNISSDKTQKEMLKVFYLVLQLSYYLLPGQVRTVKPALKQLQDSIQTISTSSRGH 252 (629)
T ss_pred HHHHHHhCccHHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHhcccchhhhHHHHHHHHHHHhccCCCCCCc
Q ss_pred -----CCCCCcHHHHHHHHH------HHHhcCChhHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHhhCC
Q 007808 289 -----GRVFPNDATIVTVLS------ACARLGALDFSKWVHVYAEYNGYQGNVCVGNALIDMYAKCGIIENAVDVFNSMD 357 (589)
Q Consensus 289 -----~~~~p~~~~~~~l~~------~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 357 (589)
| .|....+..+.+ .+...-.......+|++..+. -++|+...++.+
T Consensus 253 ~e~ilg--sps~~l~~wlpkeqicaLV~l~tv~hsm~~gy~~~~~K~---------------------tDe~i~q~eklk 309 (629)
T KOG2300|consen 253 DEKILG--SPSPILFEWLPKEQICALVYLVTVIHSMPAGYFKKAQKY---------------------TDEAIKQTEKLK 309 (629)
T ss_pred cccccC--CCChHHHhhccHhhhHhhhhhhHHhhhhhhHHHHHHHHH---------------------HHHHHHHHhhcc
Q ss_pred CCC----------cchHHHHHHHHHhCCChHHHHHHHHHHHH-CCCCCC--------HhHHHHHHHHHhccCcHHHHHHH
Q 007808 358 TKD----------LITWNTIISGLAMHGRGAGALSLFHEMKN-AGEMPD--------GITFIGILCACTHMGLVEEGLSY 418 (589)
Q Consensus 358 ~~~----------~~~~~~l~~~~~~~~~~~~A~~~~~~m~~-~~~~p~--------~~~~~~l~~~~~~~g~~~~A~~~ 418 (589)
+.+ ..+...++.+-.-.|++.+|++-...|.+ ..-.|. ...-..+...|...+.++.|+.-
T Consensus 310 q~d~~srilsm~km~~LE~iv~c~lv~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~~~ih~LlGlys~sv~~~enAe~h 389 (629)
T KOG2300|consen 310 QADLMSRILSMFKMILLEHIVMCRLVRGDYVEALEEIVDMKNWCTRFPTPLLLRAHEAQIHMLLGLYSHSVNCYENAEFH 389 (629)
T ss_pred cccchhHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCchHHHHHhHHHHHHHHhhHhhhcchHHHHHHH
Q ss_pred HHHhHHhcCCCCChHHHH--HHHHHHHhcCCHHHHHHHHhhCCCCC----------CHHHHHHHHHHHhcCCCHHHHHHH
Q 007808 419 FQSMAMDYSIVPQIEHYG--CMVDLLARAGRLAEAVDFVKRMPIEA----------DAVIWANLLGSCRVYKNVELAELA 486 (589)
Q Consensus 419 ~~~~~~~~~~~~~~~~~~--~l~~~~~~~g~~~~A~~~~~~~~~~p----------~~~~~~~l~~~~~~~g~~~~A~~~ 486 (589)
|..+.+. --.-|...+. .+.-.|.+.|+.+.--++++.++ +| ....+....-....++++.+|...
T Consensus 390 f~~a~k~-t~~~dl~a~~nlnlAi~YL~~~~~ed~y~~ld~i~-p~nt~s~ssq~l~a~~~~v~glfaf~qn~lnEaK~~ 467 (629)
T KOG2300|consen 390 FIEATKL-TESIDLQAFCNLNLAISYLRIGDAEDLYKALDLIG-PLNTNSLSSQRLEASILYVYGLFAFKQNDLNEAKRF 467 (629)
T ss_pred HHHHHHh-hhHHHHHHHHHHhHHHHHHHhccHHHHHHHHHhcC-CCCCCcchHHHHHHHHHHHHHHHHHHhccHHHHHHH
Q ss_pred HHHHHc------cCCCCCcchHHHHHHHhhcCChHHHHHHHHHhhhCCCccCCccceeeeCCeeeeeccccCCCchHHHH
Q 007808 487 LERLTE------LEPKNPANFVMLSNIYGDLGRWKDVARIKVAMRDTGFKKLPGCSSIEVNEVVMLGCLSRELDRKSIVR 560 (589)
Q Consensus 487 ~~~~~~------~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ 560 (589)
+.+.++ ++.-..-.+..|+.+....|+..++.+...-...-. ++-||.+..+-
T Consensus 468 l~e~Lkmanaed~~rL~a~~LvLLs~v~lslgn~~es~nmvrpamqlA---------------------kKi~Di~vqLw 526 (629)
T KOG2300|consen 468 LRETLKMANAEDLNRLTACSLVLLSHVFLSLGNTVESRNMVRPAMQLA---------------------KKIPDIPVQLW 526 (629)
T ss_pred HHHHHhhcchhhHHHHHHHHHHHHHHHHHHhcchHHHHhccchHHHHH---------------------hcCCCchHHHH
Q ss_pred H---HHHHHHHcccCC
Q 007808 561 A---EANMIKLLPQNN 573 (589)
Q Consensus 561 ~---l~~~~~~~~~~~ 573 (589)
. +..+|...|..|
T Consensus 527 s~si~~~L~~a~g~~~ 542 (629)
T KOG2300|consen 527 SSSILTDLYQALGEKG 542 (629)
T ss_pred HHHHHHHHHHHhCcch
No 460
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=43.52 E-value=3.2e+02 Score=26.63 Aligned_cols=86 Identities=12% Similarity=0.020 Sum_probs=50.0
Q ss_pred HHHHHhcCCHHHHHHHHhhC-CCCC--CHHHHHHHHHHH-hcCCCHHHHHHHHHHHHccCC-----CCCcchHHHHHHHh
Q 007808 439 VDLLARAGRLAEAVDFVKRM-PIEA--DAVIWANLLGSC-RVYKNVELAELALERLTELEP-----KNPANFVMLSNIYG 509 (589)
Q Consensus 439 ~~~~~~~g~~~~A~~~~~~~-~~~p--~~~~~~~l~~~~-~~~g~~~~A~~~~~~~~~~~p-----~~~~~~~~l~~~~~ 509 (589)
+..+.+.|.+..|+++.+-+ ..+| |+......|..| .+.++++--+++++....... .-|..-.+.+-++.
T Consensus 110 i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~~~~~~~~~~lPn~a~S~aLA~~ 189 (360)
T PF04910_consen 110 IQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLAKCYRNWLSLLPNFAFSIALAYF 189 (360)
T ss_pred HHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhhhhhhhhhhhCccHHHHHHHHHH
Confidence 45667777777777777665 3344 333334444443 466777767776666544111 11345556666666
Q ss_pred hcCCh---------------HHHHHHHHHh
Q 007808 510 DLGRW---------------KDVARIKVAM 524 (589)
Q Consensus 510 ~~g~~---------------~~A~~~~~~~ 524 (589)
..++- ++|.+.+++.
T Consensus 190 ~l~~~~~~~~~~~~~~~~~~~~A~~~L~~A 219 (360)
T PF04910_consen 190 RLEKEESSQSSAQSGRSENSESADEALQKA 219 (360)
T ss_pred HhcCccccccccccccccchhHHHHHHHHH
Confidence 66666 6777766655
No 461
>cd08326 CARD_CASP9 Caspase activation and recruitment domain of Caspase-9. Caspase activation and recruitment domain (CARD) similar to that found in caspase-9 (CASP9, MCH6, APAF3), which interacts with the CARD of apoptotic protease-activating factor 1 (APAF-1). Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Initiator caspases are the first to be activated following death- or inflammation-inducing signals. Caspase-9 is the initiator caspase associated with the intrinsic or mitochondrial pathway of apoptosis, induced by many pro-apoptotic signals. Together with APAF-1, it forms the heptameric 'apoptosome' in response to the release of cytochrome c from mitochondria. Activated caspase-9 cleaves and activates downstream effector caspases, like caspase-3, caspase-6, and caspase-7, resulting in apoptosis. In general, CARDs are death domains (DDs) associated with caspases. They are known to be important in the signaling pathways for apopt
Probab=43.42 E-value=60 Score=23.58 Aligned_cols=35 Identities=11% Similarity=0.322 Sum_probs=20.3
Q ss_pred cCCChHHHHHHHccCCCCCeehHHHHHHHHHhCCC
Q 007808 147 TGKAIEAAYKVFGEMDERNVVVWTSMINGYISCGD 181 (589)
Q Consensus 147 ~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~ 181 (589)
...+.+++.++++.++.++..+|....+++-..|.
T Consensus 42 ~~tr~~q~~~LLd~L~~RG~~AF~~F~~aL~~~~~ 76 (84)
T cd08326 42 AGSRRDQARQLLIDLETRGKQAFPAFLSALRETGQ 76 (84)
T ss_pred CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCc
Confidence 34455666666666666666666666665555443
No 462
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=43.00 E-value=1.2e+02 Score=29.95 Aligned_cols=60 Identities=20% Similarity=0.295 Sum_probs=38.6
Q ss_pred HHHHHHHhccCcHHHHHHHHHHhHHhc-CC---CC--ChHHHHHHHHHHHhcCCHHHHHHHHhhCC
Q 007808 400 IGILCACTHMGLVEEGLSYFQSMAMDY-SI---VP--QIEHYGCMVDLLARAGRLAEAVDFVKRMP 459 (589)
Q Consensus 400 ~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~---~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 459 (589)
..|++..+-.||+..|++.++.+--.. ++ .| .+.++-.++-+|.-.+++.+|.+.|...-
T Consensus 126 igLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL 191 (404)
T PF10255_consen 126 IGLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQIL 191 (404)
T ss_pred HHHHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445667777888888888877652110 00 01 13445566778888888888888887653
No 463
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=42.82 E-value=3.1e+02 Score=26.21 Aligned_cols=115 Identities=12% Similarity=0.075 Sum_probs=72.9
Q ss_pred hHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHh---cCCHHHHHH
Q 007808 377 GAGALSLFHEMKNAGEMPDGITFIGILCACTHMGLVEEGLSYFQSMAMDYSIVPQIEHYGCMVDLLAR---AGRLAEAVD 453 (589)
Q Consensus 377 ~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~g~~~~A~~ 453 (589)
.+.-+.+|++.++.+ +.+......++..+.+..+.+...+-++++...+ +-+...|...++.... .-.+++...
T Consensus 47 ~E~klsilerAL~~n-p~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~--~~~~~LW~~yL~~~q~~~~~f~v~~~~~ 123 (321)
T PF08424_consen 47 AERKLSILERALKHN-PDSERLLLGYLEEGEKVWDSEKLAKKWEELLFKN--PGSPELWREYLDFRQSNFASFTVSDVRD 123 (321)
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHC--CCChHHHHHHHHHHHHHhccCcHHHHHH
Confidence 355677888877762 3355566777788888888888888888887642 2356677777665543 223455555
Q ss_pred HHhhC-------CC--------CCC--HH---HHHHHHHHHhcCCCHHHHHHHHHHHHccC
Q 007808 454 FVKRM-------PI--------EAD--AV---IWANLLGSCRVYKNVELAELALERLTELE 494 (589)
Q Consensus 454 ~~~~~-------~~--------~p~--~~---~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 494 (589)
+|.+. .. .|+ .. .+..+...+.+.|..+.|..+++-+++++
T Consensus 124 ~y~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~~aG~~E~Ava~~Qa~lE~n 184 (321)
T PF08424_consen 124 VYEKCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLRQAGYTERAVALWQALLEFN 184 (321)
T ss_pred HHHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHCCchHHHHHHHHHHHHHH
Confidence 54433 11 111 11 22222244578999999999999999965
No 464
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=42.06 E-value=1.6e+02 Score=29.04 Aligned_cols=55 Identities=13% Similarity=0.144 Sum_probs=38.0
Q ss_pred HHHHHHHHhcCCHHHHHHHHhhCCC-----------CCchhHHHHHHHHHhCCChHHHHHHHHHHH
Q 007808 232 NTMLSGYANNGDVEECKRLFEEMPE-----------RNVFSWNGLIGGYANNGLFFEVLDAFKRML 286 (589)
Q Consensus 232 ~~l~~~~~~~~~~~~A~~~~~~~~~-----------~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 286 (589)
..|++.++-.|++..|+++++.+.- -.+.++..+.-+|...+++.+|++.|...+
T Consensus 126 igLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL 191 (404)
T PF10255_consen 126 IGLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQIL 191 (404)
T ss_pred HHHHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455666667777777777665541 244566677778888888888888887764
No 465
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=41.02 E-value=3.2e+02 Score=25.90 Aligned_cols=82 Identities=15% Similarity=-0.036 Sum_probs=55.4
Q ss_pred HHHHHHHHHHhHHhcCC---CCChHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHH
Q 007808 412 VEEGLSYFQSMAMDYSI---VPQIEHYGCMVDLLARAGRLAEAVDFVKRMPIEADAVIWANLLGSCRVYKNVELAELALE 488 (589)
Q Consensus 412 ~~~A~~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 488 (589)
.+.|.+.|+.......- ..++.....+.....+.|..++-..+++.....++...-..++.++....+.+...++++
T Consensus 146 ~~~a~~~~~~~~~~~~~~~~~i~~dlr~~v~~~~~~~g~~~~~~~l~~~~~~~~~~~~k~~~l~aLa~~~d~~~~~~~l~ 225 (324)
T PF11838_consen 146 VAEARELFKAWLDGNDSPESSIPPDLRWAVYCAGVRNGDEEEWDFLWELYKNSTSPEEKRRLLSALACSPDPELLKRLLD 225 (324)
T ss_dssp HHHHHHHHHHHHHTTT-TTSTS-HHHHHHHHHHHTTS--HHHHHHHHHHHHTTSTHHHHHHHHHHHTT-S-HHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCcccccccchHHHHHHHHHHHHHhhHhhHHHHHHHHhccCCHHHHHHHHHhhhccCCHHHHHHHHH
Confidence 66778888887653111 345555666667777888876666666666556677778888899988999998899999
Q ss_pred HHHcc
Q 007808 489 RLTEL 493 (589)
Q Consensus 489 ~~~~~ 493 (589)
.++.-
T Consensus 226 ~~l~~ 230 (324)
T PF11838_consen 226 LLLSN 230 (324)
T ss_dssp HHHCT
T ss_pred HHcCC
Confidence 99884
No 466
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=40.99 E-value=91 Score=28.39 Aligned_cols=21 Identities=19% Similarity=0.332 Sum_probs=10.4
Q ss_pred HHHHHHhcCCHHHHHHHHhhC
Q 007808 438 MVDLLARAGRLAEAVDFVKRM 458 (589)
Q Consensus 438 l~~~~~~~g~~~~A~~~~~~~ 458 (589)
+...|.+.|++++|.++|+.+
T Consensus 184 ~A~ey~~~g~~~~A~~~l~~~ 204 (247)
T PF11817_consen 184 MAEEYFRLGDYDKALKLLEPA 204 (247)
T ss_pred HHHHHHHCCCHHHHHHHHHHH
Confidence 444455555555555555444
No 467
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=40.90 E-value=2.7e+02 Score=25.02 Aligned_cols=55 Identities=16% Similarity=0.250 Sum_probs=36.3
Q ss_pred HHHHhhCCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHH
Q 007808 350 VDVFNSMDTKDLITWNTIISGLAMHGRGAGALSLFHEMKNAGEMPDGITFIGILCAC 406 (589)
Q Consensus 350 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~ 406 (589)
..+|+-..+|.+.....++..+. .+++++|.+++.++.+.|..|... .+.+.+.+
T Consensus 228 enVfKv~d~PhP~~v~~ml~~~~-~~~~~~A~~il~~lw~lgysp~Di-i~~~FRv~ 282 (333)
T KOG0991|consen 228 ENVFKVCDEPHPLLVKKMLQACL-KRNIDEALKILAELWKLGYSPEDI-ITTLFRVV 282 (333)
T ss_pred hhhhhccCCCChHHHHHHHHHHH-hccHHHHHHHHHHHHHcCCCHHHH-HHHHHHHH
Confidence 34455555667766667776554 467899999999999988887543 23344443
No 468
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=40.76 E-value=57 Score=30.27 Aligned_cols=39 Identities=28% Similarity=0.352 Sum_probs=30.2
Q ss_pred hHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHhHHHH
Q 007808 363 TWNTIISGLAMHGRGAGALSLFHEMKNAGEMPDGITFIG 401 (589)
Q Consensus 363 ~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ 401 (589)
-|+..|..-.+.||.++|+.++++..+.|+.--..+|..
T Consensus 259 Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tFik 297 (303)
T PRK10564 259 YFNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTFIS 297 (303)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHHHH
Confidence 467888888888999999999999988886655555543
No 469
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=40.37 E-value=95 Score=28.30 Aligned_cols=55 Identities=13% Similarity=-0.010 Sum_probs=33.6
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHccC------CCCCcchHHHHHHHhhcCChHHHHHHHHHh
Q 007808 470 LLGSCRVYKNVELAELALERLTELE------PKNPANFVMLSNIYGDLGRWKDVARIKVAM 524 (589)
Q Consensus 470 l~~~~~~~g~~~~A~~~~~~~~~~~------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 524 (589)
+..-|.+.|++++|.++|+.+...- .-...+...+..++.+.|+.++.+.+.=++
T Consensus 184 ~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~leL 244 (247)
T PF11817_consen 184 MAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLEL 244 (247)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 3355677777777777777775421 112345666677777777777766654333
No 470
>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]. This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.
Probab=40.34 E-value=94 Score=28.73 Aligned_cols=62 Identities=16% Similarity=0.026 Sum_probs=47.3
Q ss_pred HHHHHHHHHccCCCCCcchHHHHHHHhhcCChHHHHHHHHHhhhCCCccCCccceeeeCCeeeeeccccCCCchHHHHHH
Q 007808 483 AELALERLTELEPKNPANFVMLSNIYGDLGRWKDVARIKVAMRDTGFKKLPGCSSIEVNEVVMLGCLSRELDRKSIVRAE 562 (589)
Q Consensus 483 A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l 562 (589)
|.++|.++..+.|.+...|+.|+-++...|+.=+|+-.|-+.. . -..|- +.+.++|
T Consensus 1 A~~~Y~~A~~l~P~~G~p~nQLAvl~~~~~~~l~avy~y~Rsl---~--------------------~~~Pf-~~A~~NL 56 (278)
T PF10373_consen 1 AERYYRKAIRLLPSNGNPYNQLAVLASYQGDDLDAVYYYIRSL---A--------------------VRIPF-PSARENL 56 (278)
T ss_dssp HHHHHHHHHHH-TTBSHHHHHHHHHHHHTT-HHHHHHHHHHHH---S--------------------SSB---HHHHHHH
T ss_pred CHHHHHHHHHhCCCCCCcccchhhhhccccchHHHHHHHHHHH---h--------------------cCCCc-HHHHHHH
Confidence 6789999999999999999999999999999888887665553 1 24555 7778888
Q ss_pred HHHHHH
Q 007808 563 ANMIKL 568 (589)
Q Consensus 563 ~~~~~~ 568 (589)
..++.+
T Consensus 57 ~~lf~~ 62 (278)
T PF10373_consen 57 QKLFEK 62 (278)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 888777
No 471
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=40.30 E-value=51 Score=33.08 Aligned_cols=41 Identities=17% Similarity=0.154 Sum_probs=18.8
Q ss_pred HHHHHHHHHHccCCCCCcchHHHHHHHhhcCChHHHHHHHH
Q 007808 482 LAELALERLTELEPKNPANFVMLSNIYGDLGRWKDVARIKV 522 (589)
Q Consensus 482 ~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 522 (589)
.|++-.-.+++++|....++..|++++...+++.+|+....
T Consensus 429 ~AlrDch~Alrln~s~~kah~~la~aL~el~r~~eal~~~~ 469 (758)
T KOG1310|consen 429 LALRDCHVALRLNPSIQKAHFRLARALNELTRYLEALSCHW 469 (758)
T ss_pred HHHHhHHhhccCChHHHHHHHHHHHHHHHHhhHHHhhhhHH
Confidence 33333344444444444444444444444444444444433
No 472
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=38.90 E-value=4.3e+02 Score=26.73 Aligned_cols=61 Identities=10% Similarity=0.145 Sum_probs=46.4
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHccCCCCCcchHHHHHHHhhcCChHHHHHHHHHhhhCCCccCC
Q 007808 470 LLGSCRVYKNVELAELALERLTELEPKNPANFVMLSNIYGDLGRWKDVARIKVAMRDTGFKKLP 533 (589)
Q Consensus 470 l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 533 (589)
-+.+|.+..+...+.+-.+.+..+..+++.....-...+.-.|++..|.+++-.. ++...+
T Consensus 212 kVr~llq~~~Lk~~krevK~vmn~a~~s~~~l~LKsq~eY~~gn~~kA~KlL~~s---ni~~~~ 272 (696)
T KOG2471|consen 212 KVRFLLQTRNLKLAKREVKHVMNIAQDSSMALLLKSQLEYAHGNHPKAMKLLLVS---NIHKEA 272 (696)
T ss_pred hHHHHHHHHHHHHHHHhhhhhhhhcCCCcHHHHHHHHHHHHhcchHHHHHHHHhc---cccccc
Confidence 4466667777888888778877777777778888889999999999999886544 454444
No 473
>PF12926 MOZART2: Mitotic-spindle organizing gamma-tubulin ring associated; InterPro: IPR024332 The MOZART2 family of proteins (also known as FAM128 and Mitotic-spindle organizing protein 2) operate as part of the gamma-tubulin ring complex, gamma-TuRC, one of the complexes necessary for chromosome segregation. This complex is located at centrosomes and mediates the formation of bipolar spindles in mitosis; it consists of six subunits. However, unlike the other four known subunits, the MOZART proteins, both 1 and 2, do not carry the conserved 'Spc97-Spc98' GCP domain, so the TUBGCP nomenclature cannot be used for it. The exact function of MOZART2 is not clear [].
Probab=38.00 E-value=1.3e+02 Score=21.91 Aligned_cols=45 Identities=7% Similarity=-0.031 Sum_probs=35.8
Q ss_pred hHHHHHHHHHHhCCCCCccchHHHHHHHHccCChhHHHHHhhcCC
Q 007808 17 HLHQIQTQVVTSGLEKSDYITPRIITACAQLKQMTYARKMFDKIT 61 (589)
Q Consensus 17 ~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 61 (589)
+=.++|+.....|+..|+.+|..++..+.-.=.++...++++.|.
T Consensus 26 eE~EL~ELa~~AGv~~dp~VFriildLL~~nVsP~AI~qmLK~m~ 70 (88)
T PF12926_consen 26 EEVELYELAQLAGVPMDPEVFRIILDLLRLNVSPDAIFQMLKSMC 70 (88)
T ss_pred HHHHHHHHHHHhCCCcChHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 335888888999999999999988888876667777777777664
No 474
>KOG2297 consensus Predicted translation factor, contains W2 domain [Translation, ribosomal structure and biogenesis]
Probab=37.99 E-value=3.5e+02 Score=25.41 Aligned_cols=17 Identities=12% Similarity=0.292 Sum_probs=8.9
Q ss_pred HHHHHHHHHHhcCCHHH
Q 007808 434 HYGCMVDLLARAGRLAE 450 (589)
Q Consensus 434 ~~~~l~~~~~~~g~~~~ 450 (589)
.|..|+.+++..|+.+-
T Consensus 323 ~yaPLL~af~s~g~sEL 339 (412)
T KOG2297|consen 323 QYAPLLAAFCSQGQSEL 339 (412)
T ss_pred hhhHHHHHHhcCChHHH
Confidence 35555555555555443
No 475
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=37.72 E-value=3.3e+02 Score=25.06 Aligned_cols=82 Identities=16% Similarity=0.191 Sum_probs=37.8
Q ss_pred ChhHHHHHHHHHhcCCChHHHHHHhcccCCCChhhHHHHHHHHHhcCCHHHHHHHHhhCCCCCchhHHHHHHHHHhCCCh
Q 007808 196 DVILWNTIVSGYIDVRNMIEARKLFDQMPKKDVISWNTMLSGYANNGDVEECKRLFEEMPERNVFSWNGLIGGYANNGLF 275 (589)
Q Consensus 196 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 275 (589)
|+.....+...|.+.|++.+|+..|-....++...+..++..+...|...++-- .. .-.+--|.-.++.
T Consensus 89 dp~LH~~~a~~~~~e~~~~~A~~Hfl~~~~~~~~~~~~ll~~~~~~~~~~e~dl----------fi-~RaVL~yL~l~n~ 157 (260)
T PF04190_consen 89 DPELHHLLAEKLWKEGNYYEAERHFLLGTDPSAFAYVMLLEEWSTKGYPSEADL----------FI-ARAVLQYLCLGNL 157 (260)
T ss_dssp -HHHHHHHHHHHHHTT-HHHHHHHHHTS-HHHHHHHHHHHHHHHHHTSS--HHH----------HH-HHHHHHHHHTTBH
T ss_pred CHHHHHHHHHHHHhhccHHHHHHHHHhcCChhHHHHHHHHHHHHHhcCCcchhH----------HH-HHHHHHHHHhcCH
Confidence 555556666666666666666666544333333333333333333333333211 11 1122335556666
Q ss_pred HHHHHHHHHHHHc
Q 007808 276 FEVLDAFKRMLTE 288 (589)
Q Consensus 276 ~~A~~~~~~~~~~ 288 (589)
..|...+....+.
T Consensus 158 ~~A~~~~~~f~~~ 170 (260)
T PF04190_consen 158 RDANELFDTFTSK 170 (260)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 7676666555543
No 476
>PRK13342 recombination factor protein RarA; Reviewed
Probab=37.01 E-value=4.4e+02 Score=26.30 Aligned_cols=44 Identities=27% Similarity=0.194 Sum_probs=29.9
Q ss_pred hHHHHHHHHHh---CCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHH
Q 007808 363 TWNTIISGLAM---HGRGAGALSLFHEMKNAGEMPDGITFIGILCAC 406 (589)
Q Consensus 363 ~~~~l~~~~~~---~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~ 406 (589)
.+..+++++.+ .++++.|+.++.+|.+.|..|....-..+..++
T Consensus 229 ~~~~~isa~~ks~rgsd~~aal~~l~~~l~~G~d~~~i~rrl~~~a~ 275 (413)
T PRK13342 229 EHYDLISALHKSIRGSDPDAALYYLARMLEAGEDPLFIARRLVIIAS 275 (413)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 34455555554 478999999999999988877755544444443
No 477
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=36.92 E-value=1e+02 Score=24.48 Aligned_cols=40 Identities=13% Similarity=0.164 Sum_probs=27.5
Q ss_pred HHHHHHHHHc--cCCCCCcchHHHHHHHhhcCChHHHHHHHH
Q 007808 483 AELALERLTE--LEPKNPANFVMLSNIYGDLGRWKDVARIKV 522 (589)
Q Consensus 483 A~~~~~~~~~--~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 522 (589)
+.++|+.+.+ +.-..+..|...+..+...|++.+|.++++
T Consensus 82 p~~if~~L~~~~IG~~~AlfYe~~A~~lE~~g~~~~A~~iy~ 123 (125)
T smart00777 82 PRELFQFLYSKGIGTKLALFYEEWAQLLEAAGRYKKADEVYQ 123 (125)
T ss_pred HHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 4556666665 444456677777777888888888877765
No 478
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=36.65 E-value=94 Score=31.79 Aligned_cols=98 Identities=14% Similarity=-0.015 Sum_probs=0.0
Q ss_pred CCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHccCCCCCcchHHHHHHHhhcCChHHHHHHHHHhhhCCCccCCccceee
Q 007808 460 IEADAVIWANLLGSCRVYKNVELAELALERLTELEPKNPANFVMLSNIYGDLGRWKDVARIKVAMRDTGFKKLPGCSSIE 539 (589)
Q Consensus 460 ~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ 539 (589)
..|....-..+--.+...++...+.......+..+|++...+..|+......|....+...+.+.
T Consensus 63 ~~~~llla~~lsi~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~ale~~~~~~~~~~~~~~~--------------- 127 (620)
T COG3914 63 VNPELLLAAFLSILLAPLADSTLAFLAKRIPLSVNPENCPAVQNLAAALELDGLQFLALADISEI--------------- 127 (620)
T ss_pred CCHHHHHHHHHHhhccccccchhHHHHHhhhHhcCcccchHHHHHHHHHHHhhhHHHHHHHHHHH---------------
Q ss_pred eCCeeeeeccccCCCchHHHHHH------HHHHHHcccCCCCcchHh
Q 007808 540 VNEVVMLGCLSRELDRKSIVRAE------ANMIKLLPQNNHPLTFIV 580 (589)
Q Consensus 540 ~~~~~~~~~~~~~p~~~~~~~~l------~~~~~~~~~~~~~~~~~~ 580 (589)
+....|++..+..++ ++....+|+.+++.+.+.
T Consensus 128 --------a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~ 166 (620)
T COG3914 128 --------AEWLSPDNAEFLGHLIRFYQLGRYLKLLGRTAEAELALE 166 (620)
T ss_pred --------HHhcCcchHHHHhhHHHHHHHHHHHHHhccHHHHHHHHH
No 479
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=36.27 E-value=3.6e+02 Score=25.33 Aligned_cols=88 Identities=13% Similarity=0.114 Sum_probs=57.9
Q ss_pred HHHHHHHHHhCCCCchHHHhHHHHHHHcCCChHHHHHHHccCCCCCeehHHHHHHHH----------HhCCCHHHHHHHH
Q 007808 120 EELHCLVLKNGFRANIFVGTALIELYSTGKAIEAAYKVFGEMDERNVVVWTSMINGY----------ISCGDIVSARCLF 189 (589)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~----------~~~g~~~~a~~~~ 189 (589)
.++|+.+.+.++.|.-..+.-+.-.+...=.+...+.+++.+..... -+..|+..| .-.|++..-.+++
T Consensus 263 ~EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~sD~~-rfd~Ll~iCcsmlil~Re~il~~DF~~nmkLL 341 (370)
T KOG4567|consen 263 EELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLSDPQ-RFDFLLYICCSMLILVRERILEGDFTVNMKLL 341 (370)
T ss_pred HHHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHhcChh-hhHHHHHHHHHHHHHHHHHHHhcchHHHHHHH
Confidence 46777777777777777777666666777777778888777764211 133333333 3368888888888
Q ss_pred HhCCCCChhHHHHHHHHHh
Q 007808 190 ELAPERDVILWNTIVSGYI 208 (589)
Q Consensus 190 ~~~~~~~~~~~~~l~~~~~ 208 (589)
+.-+..|....-.+++.+.
T Consensus 342 Q~yp~tdi~~~l~~A~~Lr 360 (370)
T KOG4567|consen 342 QNYPTTDISKMLAVADSLR 360 (370)
T ss_pred hcCCCCCHHHHHHHHHHHH
Confidence 8877777766655555544
No 480
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=36.21 E-value=3e+02 Score=27.09 Aligned_cols=55 Identities=7% Similarity=-0.095 Sum_probs=37.4
Q ss_pred HHHcCCChhHHHHHHHHhhhCCCCCCcc--cHHHHHHHHh--ccCChHHHHHHHHHHHHh
Q 007808 74 GYAQNEFHRTVVVLFTQMKKLDAMPNCF--TFPIVLKSCV--KINALREGEELHCLVLKN 129 (589)
Q Consensus 74 ~~~~~~~~~~a~~~~~~m~~~~~~p~~~--~~~~ll~~~~--~~~~~~~a~~~~~~~~~~ 129 (589)
.+.+.+++..|.++|+.+... ++++.. .+..+..+|. ..-++.+|.+.++.....
T Consensus 140 ~l~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 140 ELFNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 445788999999999998876 555554 3344444443 335677888888877664
No 481
>PF06957 COPI_C: Coatomer (COPI) alpha subunit C-terminus; InterPro: IPR010714 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the C terminus (approximately 500 residues) of the eukaryotic coatomer alpha subunit [, ]. This domain is found along with the IPR006692 from INTERPRO domain. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0005515 protein binding, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030126 COPI vesicle coat; PDB: 3MKR_B 3MV2_E 3MKQ_B 3MV3_A.
Probab=35.71 E-value=3.1e+02 Score=27.32 Aligned_cols=42 Identities=19% Similarity=0.209 Sum_probs=28.9
Q ss_pred HhhCCCCCCH--HHHHHHHHHHhcCCCHHHHHHHHHHHHccCCC
Q 007808 455 VKRMPIEADA--VIWANLLGSCRVYKNVELAELALERLTELEPK 496 (589)
Q Consensus 455 ~~~~~~~p~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 496 (589)
|-...+.|.. .++..-+..+.+.+++..|-.+.++++++.|.
T Consensus 289 FThc~LQp~H~~LaLr~AM~~~~K~KNf~tAa~FArRLLel~p~ 332 (422)
T PF06957_consen 289 FTHCKLQPSHLILALRSAMSQAFKLKNFITAASFARRLLELNPS 332 (422)
T ss_dssp HCCS---HHHHHHHHHHHHHHCCCTTBHHHHHHHHHHHHCT--S
T ss_pred HhcCCCcHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHcCCC
Confidence 3444455543 44566677889999999999999999999986
No 482
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=35.68 E-value=1.2e+02 Score=19.21 Aligned_cols=33 Identities=18% Similarity=0.088 Sum_probs=21.1
Q ss_pred HhCCChHHHHHHHHHHHHCCCCCCHhHHHHHHH
Q 007808 372 AMHGRGAGALSLFHEMKNAGEMPDGITFIGILC 404 (589)
Q Consensus 372 ~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~ 404 (589)
.+.|-..++..++++|.+.|+.-+...+..++.
T Consensus 13 k~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~ 45 (48)
T PF11848_consen 13 KRRGLISEVKPLLDRLQQAGFRISPKLIEEILR 45 (48)
T ss_pred HHcCChhhHHHHHHHHHHcCcccCHHHHHHHHH
Confidence 345666667777777777777666666655543
No 483
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=35.26 E-value=1e+02 Score=28.69 Aligned_cols=31 Identities=16% Similarity=0.093 Sum_probs=17.2
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHcCCCC
Q 007808 298 IVTVLSACARLGALDFSKWVHVYAEYNGYQG 328 (589)
Q Consensus 298 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 328 (589)
|+..|....+.||+++|+.+++++.+.|...
T Consensus 260 y~~aI~~AVk~gDi~KAL~LldEAe~LG~~~ 290 (303)
T PRK10564 260 FNQAIKQAVKKGDVDKALKLLDEAERLGSTS 290 (303)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCch
Confidence 3355555555555555555555555555443
No 484
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=34.91 E-value=1.7e+02 Score=30.56 Aligned_cols=46 Identities=7% Similarity=-0.034 Sum_probs=21.9
Q ss_pred HHHHHHHhCCChHHHHHHHHHHHHCC--CCCCHhHHHHHHHHHhccCc
Q 007808 366 TIISGLAMHGRGAGALSLFHEMKNAG--EMPDGITFIGILCACTHMGL 411 (589)
Q Consensus 366 ~l~~~~~~~~~~~~A~~~~~~m~~~~--~~p~~~~~~~l~~~~~~~g~ 411 (589)
+|..+|..+|++-.+..+++...... -+.-...||..++...+.|.
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~s 80 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGS 80 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCC
Confidence 45555555555555555555555421 11112234444555555444
No 485
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=34.83 E-value=1.4e+02 Score=20.10 Aligned_cols=24 Identities=17% Similarity=0.048 Sum_probs=11.0
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHH
Q 007808 298 IVTVLSACARLGALDFSKWVHVYA 321 (589)
Q Consensus 298 ~~~l~~~~~~~~~~~~a~~~~~~~ 321 (589)
...++.++...|++++|.+++..+
T Consensus 26 hLqvI~gllqlg~~~~a~eYi~~~ 49 (62)
T PF14689_consen 26 HLQVIYGLLQLGKYEEAKEYIKEL 49 (62)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHH
Confidence 334444555555555555544443
No 486
>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=34.70 E-value=3.7e+02 Score=24.72 Aligned_cols=118 Identities=12% Similarity=0.139 Sum_probs=83.7
Q ss_pred HHhcCCHHHHHHHHhhC-CCCC-CHHHHHHHHHHHhc-CCCHHHHHHHHHHHHccCCCCCcchHHHHHHHhhcCChH-HH
Q 007808 442 LARAGRLAEAVDFVKRM-PIEA-DAVIWANLLGSCRV-YKNVELAELALERLTELEPKNPANFVMLSNIYGDLGRWK-DV 517 (589)
Q Consensus 442 ~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~-~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~-~A 517 (589)
+.+..+...|+++-... ...| +...|+.--..+.. ..+..+-.+.+.++++-+|.|-..+..-=.+....|+.. +-
T Consensus 53 ~~~~E~S~RAl~LT~d~i~lNpAnYTVW~yRr~iL~~l~~dL~~El~~l~eI~e~npKNYQvWHHRr~ive~l~d~s~rE 132 (318)
T KOG0530|consen 53 IAKNEKSPRALQLTEDAIRLNPANYTVWQYRRVILRHLMSDLNKELEYLDEIIEDNPKNYQVWHHRRVIVELLGDPSFRE 132 (318)
T ss_pred HhccccCHHHHHHHHHHHHhCcccchHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCccchhHHHHHHHHHHHhcCcccch
Confidence 44556677788877766 3455 33444433333322 235778888999999999999988888877888888777 67
Q ss_pred HHHHHHhhhCCCccCCccceeeeCCeeeeeccccCCCchHHHHHHHHHHHHcccCCCCcchHhhhh
Q 007808 518 ARIKVAMRDTGFKKLPGCSSIEVNEVVMLGCLSRELDRKSIVRAEANMIKLLPQNNHPLTFIVVIF 583 (589)
Q Consensus 518 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 583 (589)
+++.+.|. +.+..|-.++.+-.|+....+..++..++..-|.
T Consensus 133 Lef~~~~l------------------------~~DaKNYHaWshRqW~~r~F~~~~~EL~y~~~Ll 174 (318)
T KOG0530|consen 133 LEFTKLML------------------------DDDAKNYHAWSHRQWVLRFFKDYEDELAYADELL 174 (318)
T ss_pred HHHHHHHH------------------------hccccchhhhHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 77888885 5566778888888888888888777777765543
No 487
>PF14669 Asp_Glu_race_2: Putative aspartate racemase
Probab=34.36 E-value=3.1e+02 Score=23.77 Aligned_cols=40 Identities=10% Similarity=0.143 Sum_probs=20.6
Q ss_pred CCCCCCcccHHHHHHHHhcc----CChHHHHHHHHHHHHhCCCC
Q 007808 94 LDAMPNCFTFPIVLKSCVKI----NALREGEELHCLVLKNGFRA 133 (589)
Q Consensus 94 ~~~~p~~~~~~~ll~~~~~~----~~~~~a~~~~~~~~~~~~~~ 133 (589)
.|..++...++-++..+... +..+.+..+=.+....++.+
T Consensus 2 AGm~l~~Eh~~yiiklL~qlq~s~qEi~~vl~~KsR~~~~~~~~ 45 (233)
T PF14669_consen 2 AGMVLDPEHFNYIIKLLYQLQASKQEIDAVLEIKSRLQARQFKK 45 (233)
T ss_pred CcccCCHHHHHHHHHHHHhhcCchhhhHHHHHHHHHHHhcCCCc
Confidence 35566666677666655443 33344444444444444433
No 488
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=34.33 E-value=4.7e+02 Score=25.83 Aligned_cols=52 Identities=19% Similarity=0.089 Sum_probs=30.6
Q ss_pred CCchhHHHHHHHHHhC---CChHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHhcC
Q 007808 257 RNVFSWNGLIGGYANN---GLFFEVLDAFKRMLTEGRVFPNDATIVTVLSACARLG 309 (589)
Q Consensus 257 ~~~~~~~~l~~~~~~~---g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~ 309 (589)
++-..+..+++++.++ .+.+.|+-++-+|++.| -.|-...-..+.-++..-|
T Consensus 244 k~gD~hYdliSA~hKSvRGSD~dAALyylARmi~~G-eDp~yiARRlv~~AsEDIG 298 (436)
T COG2256 244 KDGDAHYDLISALHKSVRGSDPDAALYYLARMIEAG-EDPLYIARRLVRIASEDIG 298 (436)
T ss_pred CCcchHHHHHHHHHHhhccCCcCHHHHHHHHHHhcC-CCHHHHHHHHHHHHHhhcc
Confidence 3444555567776554 67888888888888887 4444433333333443333
No 489
>PRK09462 fur ferric uptake regulator; Provisional
Probab=34.04 E-value=1.8e+02 Score=23.92 Aligned_cols=60 Identities=12% Similarity=0.072 Sum_probs=35.8
Q ss_pred HhhhCCCCCCcccHHHHHHHHhcc-CChHHHHHHHHHHHHhCCCCchHHHhHHHHHHHcCCC
Q 007808 90 QMKKLDAMPNCFTFPIVLKSCVKI-NALREGEELHCLVLKNGFRANIFVGTALIELYSTGKA 150 (589)
Q Consensus 90 ~m~~~~~~p~~~~~~~ll~~~~~~-~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 150 (589)
.+.+.|++++..-. .++..+... +..-.|.++++.+.+.++..+..|--.-++.+...|-
T Consensus 7 ~l~~~glr~T~qR~-~Il~~l~~~~~~h~sa~eI~~~l~~~~~~i~~aTVYR~L~~L~e~Gl 67 (148)
T PRK09462 7 ALKKAGLKVTLPRL-KILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGI 67 (148)
T ss_pred HHHHcCCCCCHHHH-HHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCC
Confidence 34556666555433 334444433 4567888888888887766665554445566666554
No 490
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=33.31 E-value=1.5e+02 Score=28.12 Aligned_cols=86 Identities=9% Similarity=-0.090 Sum_probs=64.2
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHccCCC----CCcchHHHHHHHhhcCChHHHHHHHHHhhhCCCccCCccceeeeCC
Q 007808 467 WANLLGSCRVYKNVELAELALERLTELEPK----NPANFVMLSNIYGDLGRWKDVARIKVAMRDTGFKKLPGCSSIEVNE 542 (589)
Q Consensus 467 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 542 (589)
|.-=.+-|.+..++..|...|.+.+...-. +...|.+-+-+..-.|++..|+.-..+.+
T Consensus 84 ~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al----------------- 146 (390)
T KOG0551|consen 84 YKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAAL----------------- 146 (390)
T ss_pred HHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH-----------------
Confidence 334456688899999999999999985433 34577888888888899999988776664
Q ss_pred eeeeeccccCCCchHHHHHHHHHHHHcccCCCCc
Q 007808 543 VVMLGCLSRELDRKSIVRAEANMIKLLPQNNHPL 576 (589)
Q Consensus 543 ~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~ 576 (589)
..+|.+..++.--+....++.+..+|+
T Consensus 147 -------~~~P~h~Ka~~R~Akc~~eLe~~~~a~ 173 (390)
T KOG0551|consen 147 -------KLKPTHLKAYIRGAKCLLELERFAEAV 173 (390)
T ss_pred -------hcCcchhhhhhhhhHHHHHHHHHHHHH
Confidence 677888777777777777777743333
No 491
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=33.31 E-value=2.4e+02 Score=23.11 Aligned_cols=32 Identities=19% Similarity=0.166 Sum_probs=15.3
Q ss_pred HHHHHHhCCChHHHHHHHHHHHHCCCCCCHhH
Q 007808 367 IISGLAMHGRGAGALSLFHEMKNAGEMPDGIT 398 (589)
Q Consensus 367 l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~ 398 (589)
++..+.+.++.-.|.++++++.+.+...+..|
T Consensus 26 vl~~L~~~~~~~sAeei~~~l~~~~p~islaT 57 (145)
T COG0735 26 VLELLLEADGHLSAEELYEELREEGPGISLAT 57 (145)
T ss_pred HHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhH
Confidence 34444444444555555555555443334333
No 492
>PRK09857 putative transposase; Provisional
Probab=33.23 E-value=2.1e+02 Score=26.84 Aligned_cols=65 Identities=12% Similarity=0.131 Sum_probs=48.4
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHccCCCCCcchHHHHHHHhhcCChHHHHHHHHHhhhCCCccC
Q 007808 468 ANLLGSCRVYKNVELAELALERLTELEPKNPANFVMLSNIYGDLGRWKDVARIKVAMRDTGFKKL 532 (589)
Q Consensus 468 ~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 532 (589)
..++.-....|+.++-.++++...+..|...+...+++.-+.+.|.-++++++.++|...|+..+
T Consensus 210 ~~ll~Yi~~~~~~~~~~~~~~~l~~~~~~~~e~iMTiAEqL~qeG~qe~~~~ia~~ml~~g~~~~ 274 (292)
T PRK09857 210 KGLFNYILQTGDAVRFNDFIDGVAERSPKHKESLMTIAERLRQEGEQSKALHIAKIMLESGVPLA 274 (292)
T ss_pred HHHHHHHhhccccchHHHHHHHHHHhCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHH
Confidence 33443334567776677777777776676677788889999888988889999999988887654
No 493
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=33.16 E-value=2.5e+02 Score=30.59 Aligned_cols=132 Identities=14% Similarity=0.114 Sum_probs=79.3
Q ss_pred HHHcCCChHHHHHHHccCCCCCeehHHHHHHHHHhCCCHHHHHHHHHhCCCCChhHHHHHHHHHhcCCChHHHHHHhccc
Q 007808 144 LYSTGKAIEAAYKVFGEMDERNVVVWTSMINGYISCGDIVSARCLFELAPERDVILWNTIVSGYIDVRNMIEARKLFDQM 223 (589)
Q Consensus 144 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 223 (589)
....+|+++.|++.-.++.+ ...|..|+....++|+.+-|...|+... .|..|--.|.-.|+.++-.++.+..
T Consensus 652 LaLe~gnle~ale~akkldd--~d~w~rLge~Al~qgn~~IaEm~yQ~~k-----nfekLsfLYliTgn~eKL~Km~~ia 724 (1202)
T KOG0292|consen 652 LALECGNLEVALEAAKKLDD--KDVWERLGEEALRQGNHQIAEMCYQRTK-----NFEKLSFLYLITGNLEKLSKMMKIA 724 (1202)
T ss_pred eehhcCCHHHHHHHHHhcCc--HHHHHHHHHHHHHhcchHHHHHHHHHhh-----hhhheeEEEEEeCCHHHHHHHHHHH
Confidence 34556777777777665543 4567888888888888888877777543 3444444566677777766666554
Q ss_pred CCCChhhHHHHHHHHHhcCCHHHHHHHHhhCCCCCchhHHHHHHHHHhCCChHHHHHHHHHHHHcC
Q 007808 224 PKKDVISWNTMLSGYANNGDVEECKRLFEEMPERNVFSWNGLIGGYANNGLFFEVLDAFKRMLTEG 289 (589)
Q Consensus 224 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 289 (589)
...+..+-..... .-.|++++-.++++....-+..-.. -...|.-++|.++.++...+.
T Consensus 725 e~r~D~~~~~qna--lYl~dv~ervkIl~n~g~~~laylt-----a~~~G~~~~ae~l~ee~~~~~ 783 (1202)
T KOG0292|consen 725 EIRNDATGQFQNA--LYLGDVKERVKILENGGQLPLAYLT-----AAAHGLEDQAEKLGEELEKQV 783 (1202)
T ss_pred HhhhhhHHHHHHH--HHhccHHHHHHHHHhcCcccHHHHH-----HhhcCcHHHHHHHHHhhcccc
Confidence 3322211111111 2257888888888776653322111 234577788888888876643
No 494
>cd08323 CARD_APAF1 Caspase activation and recruitment domain similar to that found in Apoptotic Protease-Activating Factor 1. Caspase activation and recruitment domain (CARD) similar to that found in apoptotic protease-activating factor 1 (APAF-1), which is an activator of caspase-9. APAF-1 contains WD-40 repeats, a CARD, and an ATPase domain. Upon stimulation, APAF-1, together with caspase-9, forms the heptameric 'apoptosome', which leads to the processing and activation of caspase-9, starting a caspase cascade which leads to apoptosis. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including PYRIN and DED (Death Effect
Probab=33.13 E-value=1.8e+02 Score=21.24 Aligned_cols=34 Identities=15% Similarity=0.194 Sum_probs=17.5
Q ss_pred cCCChHHHHHHHccCCCCCeehHHHHHHHHHhCC
Q 007808 147 TGKAIEAAYKVFGEMDERNVVVWTSMINGYISCG 180 (589)
Q Consensus 147 ~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g 180 (589)
+....++|.++++.++.++..+|....+++-..|
T Consensus 40 ~~t~~~qa~~Lld~L~trG~~Af~~F~~aL~~~~ 73 (86)
T cd08323 40 KATQKEKAVMLINMILTKDNHAYVSFYNALLHEG 73 (86)
T ss_pred CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC
Confidence 3344555555555555555555555555544433
No 495
>cd08326 CARD_CASP9 Caspase activation and recruitment domain of Caspase-9. Caspase activation and recruitment domain (CARD) similar to that found in caspase-9 (CASP9, MCH6, APAF3), which interacts with the CARD of apoptotic protease-activating factor 1 (APAF-1). Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Initiator caspases are the first to be activated following death- or inflammation-inducing signals. Caspase-9 is the initiator caspase associated with the intrinsic or mitochondrial pathway of apoptosis, induced by many pro-apoptotic signals. Together with APAF-1, it forms the heptameric 'apoptosome' in response to the release of cytochrome c from mitochondria. Activated caspase-9 cleaves and activates downstream effector caspases, like caspase-3, caspase-6, and caspase-7, resulting in apoptosis. In general, CARDs are death domains (DDs) associated with caspases. They are known to be important in the signaling pathways for apopt
Probab=32.42 E-value=96 Score=22.56 Aligned_cols=14 Identities=7% Similarity=-0.199 Sum_probs=5.5
Q ss_pred ChHHHHHHHHHHHH
Q 007808 274 LFFEVLDAFKRMLT 287 (589)
Q Consensus 274 ~~~~A~~~~~~~~~ 287 (589)
+.+++.++++.+..
T Consensus 45 r~~q~~~LLd~L~~ 58 (84)
T cd08326 45 RRDQARQLLIDLET 58 (84)
T ss_pred HHHHHHHHHHHHHh
Confidence 33444444443333
No 496
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]
Probab=32.11 E-value=4.1e+02 Score=25.39 Aligned_cols=87 Identities=9% Similarity=0.032 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHhhCC-------CCCcchHHH--HHHHHHhCCChHHHHHHHHHHHH-----CCCCCCH
Q 007808 331 CVGNALIDMYAKCGIIENAVDVFNSMD-------TKDLITWNT--IISGLAMHGRGAGALSLFHEMKN-----AGEMPDG 396 (589)
Q Consensus 331 ~~~~~l~~~~~~~g~~~~A~~~~~~~~-------~~~~~~~~~--l~~~~~~~~~~~~A~~~~~~m~~-----~~~~p~~ 396 (589)
.....++...-+.++.++|.+.++++. +|+.+.|.. +...+...|+..++.+++.+..+ -|++|+.
T Consensus 76 slvei~l~~~~~~~D~~~al~~Le~i~~~~~~~~e~~av~~~~t~~~r~~L~i~DLk~~kk~ldd~~~~ld~~~~v~~~V 155 (380)
T KOG2908|consen 76 SLVEILLVVSEQISDKDEALEFLEKIIEKLKEYKEPDAVIYILTEIARLKLEINDLKEIKKLLDDLKSMLDSLDGVTSNV 155 (380)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhcccCCChhh
Q ss_pred hH--HHHHHHHHhccCcHHHHHH
Q 007808 397 IT--FIGILCACTHMGLVEEGLS 417 (589)
Q Consensus 397 ~~--~~~l~~~~~~~g~~~~A~~ 417 (589)
.+ |..--..|...|++.....
T Consensus 156 h~~fY~lssqYyk~~~d~a~yYr 178 (380)
T KOG2908|consen 156 HSSFYSLSSQYYKKIGDFASYYR 178 (380)
T ss_pred hhhHHHHHHHHHHHHHhHHHHHH
No 497
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=31.91 E-value=1e+02 Score=32.46 Aligned_cols=23 Identities=17% Similarity=0.069 Sum_probs=12.6
Q ss_pred HhcCCCHHHHHHHHHHHHccCCC
Q 007808 474 CRVYKNVELAELALERLTELEPK 496 (589)
Q Consensus 474 ~~~~g~~~~A~~~~~~~~~~~p~ 496 (589)
|...+..+.|.+-|+++.+..|.
T Consensus 297 ytDa~s~~~a~~WyrkaFeveP~ 319 (1226)
T KOG4279|consen 297 YTDAESLNHAIEWYRKAFEVEPL 319 (1226)
T ss_pred CcchhhHHHHHHHHHHHhccCch
Confidence 33444455566666666665554
No 498
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=31.06 E-value=6.5e+02 Score=26.48 Aligned_cols=252 Identities=10% Similarity=0.059 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhCCCCCccchHHHHHHHHccCChhHHHHHhhcCCCCC-cccHHHHHHHHHcCCChhHHHHHHHHhhhCCC
Q 007808 18 LHQIQTQVVTSGLEKSDYITPRIITACAQLKQMTYARKMFDKITDQN-VVSWNAMFNGYAQNEFHRTVVVLFTQMKKLDA 96 (589)
Q Consensus 18 ~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~ 96 (589)
++++-......--.+....+..+++.+... +.+.-.++++++.. . ...|..+++++...|-.....-+.+.+....+
T Consensus 294 l~~L~~~~~~~~~~~~~~~f~~lv~~lR~~-~~e~l~~l~~~~~~-~~~~~r~~~~Dal~~~GT~~a~~~i~~~i~~~~~ 371 (574)
T smart00638 294 LKHLVQDIASDVQEPAAAKFLRLVRLLRTL-SEEQLEQLWRQLYE-KKKKARRIFLDAVAQAGTPPALKFIKQWIKNKKI 371 (574)
T ss_pred HHHHHHHHHHHhccchHHHHHHHHHHHHhC-CHHHHHHHHHHHHh-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCC
Q ss_pred CC-CcccHHHHHHHHhccCChHHHHHHHHHHHHhCCCCch-------HHHhHHHHHHHcCCCh------HHHHHHHccCC
Q 007808 97 MP-NCFTFPIVLKSCVKINALREGEELHCLVLKNGFRANI-------FVGTALIELYSTGKAI------EAAYKVFGEMD 162 (589)
Q Consensus 97 ~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~li~~~~~~g~~------~~A~~~~~~~~ 162 (589)
.+ .....-..+-...+.-..+-...+++.+......+.. ..+..++.-+|..... ++....+.+..
T Consensus 372 ~~~ea~~~~~~~~~~~~~Pt~~~l~~l~~l~~~~~~~~~~~l~~sa~l~~~~lv~~~c~~~~~~~~~~~~~~~~~l~~~l 451 (574)
T smart00638 372 TPLEAAQLLAVLPHTARYPTEEILKALFELAESPEVQKQPYLRESALLAYGSLVRRYCVNTPSCPDFVLEELLKYLHELL 451 (574)
T ss_pred CHHHHHHHHHHHHHhhhcCCHHHHHHHHHHhcCccccccHHHHHHHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHH
Q ss_pred C-----CCeehHHHHHHHHHhCCCHHHHHHHHHhCC---CCChhHHHHHHHHHhcC--CChHHHHHHhcccCC---CChh
Q 007808 163 E-----RNVVVWTSMINGYISCGDIVSARCLFELAP---ERDVILWNTIVSGYIDV--RNMIEARKLFDQMPK---KDVI 229 (589)
Q Consensus 163 ~-----~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~---~~~~~~~~~l~~~~~~~--g~~~~a~~~~~~~~~---~~~~ 229 (589)
. .|..--...+.+++..|.......+-..+. ..+...-...+.++.+. ...+++..++-.+.. .+..
T Consensus 452 ~~~~~~~~~~~~~~~LkaLGN~g~~~~i~~l~~~l~~~~~~~~~iR~~Av~Alr~~a~~~p~~v~~~l~~i~~n~~e~~E 531 (574)
T smart00638 452 QQAVSKGDEEEIQLYLKALGNAGHPSSIKVLEPYLEGAEPLSTFIRLAAILALRNLAKRDPRKVQEVLLPIYLNRAEPPE 531 (574)
T ss_pred HHHHhcCCchheeeHHHhhhccCChhHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHhCchHHHHHHHHHHcCCCCChH
Q ss_pred hHHHHHHHHHhc-CCHHHHHHHHhhCCCCCchhHHHHHHHHHh
Q 007808 230 SWNTMLSGYANN-GDVEECKRLFEEMPERNVFSWNGLIGGYAN 271 (589)
Q Consensus 230 ~~~~l~~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~ 271 (589)
...+-...+.++ -.......+...+......--...+..+.+
T Consensus 532 vRiaA~~~lm~t~P~~~~l~~ia~~l~~E~~~QV~sfv~S~l~ 574 (574)
T smart00638 532 VRMAAVLVLMETKPSVALLQRIAELLNKEPNLQVASFVYSHIR 574 (574)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHhhcCcHHHHHHhHHhhC
No 499
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=30.91 E-value=1.8e+02 Score=24.57 Aligned_cols=37 Identities=8% Similarity=-0.108 Sum_probs=17.3
Q ss_pred CChHHHHHHHHHHHHhCCCCchHHHhHHHHHHHcCCC
Q 007808 114 NALREGEELHCLVLKNGFRANIFVGTALIELYSTGKA 150 (589)
Q Consensus 114 ~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 150 (589)
++.-.|.++++.+.+.+..++..|--.-++.+...|-
T Consensus 39 ~~hlSa~eI~~~L~~~~~~is~aTVYRtL~~L~e~Gl 75 (169)
T PRK11639 39 PGAISAYDLLDLLREAEPQAKPPTVYRALDFLLEQGF 75 (169)
T ss_pred CCCCCHHHHHHHHHhhCCCCCcchHHHHHHHHHHCCC
Confidence 3444555555555555544444333333444444443
No 500
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=30.57 E-value=2e+02 Score=27.02 Aligned_cols=28 Identities=14% Similarity=0.181 Sum_probs=19.7
Q ss_pred CCChHHHHHHHHHHHhcCCHHHHHHHHh
Q 007808 429 VPQIEHYGCMVDLLARAGRLAEAVDFVK 456 (589)
Q Consensus 429 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 456 (589)
.-|+..|..+..+|.-.|+...+.+-+.
T Consensus 194 ~Fd~~~Y~~v~~AY~lLgk~~~~~dkl~ 221 (291)
T PF10475_consen 194 DFDPDKYSKVQEAYQLLGKTQSAMDKLQ 221 (291)
T ss_pred hCCHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 3667778888888888887766654433
Done!