Query 007808
Match_columns 589
No_of_seqs 624 out of 3777
Neff 11.3
Searched_HMMs 29240
Date Mon Mar 25 11:00:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007808.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/007808hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xpi_A Anaphase-promoting comp 100.0 4.2E-45 1.4E-49 383.0 31.3 492 42-567 61-595 (597)
2 2xpi_A Anaphase-promoting comp 100.0 4.7E-40 1.6E-44 344.6 30.2 473 32-510 82-596 (597)
3 1w3b_A UDP-N-acetylglucosamine 100.0 7.1E-30 2.4E-34 252.1 36.7 368 173-571 6-388 (388)
4 1w3b_A UDP-N-acetylglucosamine 100.0 4.2E-28 1.5E-32 239.3 36.2 278 229-513 102-388 (388)
5 4g26_A Pentatricopeptide repea 99.9 1.1E-26 3.8E-31 232.7 22.3 183 260-444 27-222 (501)
6 2gw1_A Mitochondrial precursor 99.9 6.3E-25 2.2E-29 225.3 32.7 449 67-567 8-494 (514)
7 3fp2_A TPR repeat-containing p 99.9 1.8E-24 6.2E-29 223.2 32.4 425 65-525 25-489 (537)
8 4g26_A Pentatricopeptide repea 99.9 1.1E-25 3.6E-30 225.6 21.6 198 277-476 8-222 (501)
9 2y4t_A DNAJ homolog subfamily 99.9 2.6E-24 8.8E-29 216.8 31.3 350 196-577 25-446 (450)
10 3fp2_A TPR repeat-containing p 99.9 3.7E-24 1.3E-28 220.9 32.8 435 34-502 25-500 (537)
11 2y4t_A DNAJ homolog subfamily 99.9 6E-24 2E-28 214.1 30.9 311 227-568 25-375 (450)
12 2gw1_A Mitochondrial precursor 99.9 3.5E-24 1.2E-28 219.7 26.7 390 167-583 7-476 (514)
13 3ieg_A DNAJ homolog subfamily 99.9 4.2E-22 1.4E-26 193.9 31.0 322 197-571 3-355 (359)
14 3hym_B Cell division cycle pro 99.9 9.1E-21 3.1E-25 182.2 30.0 286 257-572 20-321 (330)
15 3ieg_A DNAJ homolog subfamily 99.9 3.5E-20 1.2E-24 180.2 29.3 308 166-512 3-354 (359)
16 1fch_A Peroxisomal targeting s 99.9 7.5E-21 2.6E-25 185.9 19.7 315 210-580 14-354 (368)
17 1xi4_A Clathrin heavy chain; a 99.9 2E-17 6.8E-22 175.5 45.0 381 101-520 986-1377(1630)
18 3hym_B Cell division cycle pro 99.9 4E-19 1.4E-23 170.6 28.1 286 226-515 20-322 (330)
19 2xm6_A Protein corresponding t 99.8 1.6E-18 5.6E-23 175.9 33.3 318 179-510 92-452 (490)
20 1xi4_A Clathrin heavy chain; a 99.8 7.3E-17 2.5E-21 171.2 45.3 481 25-576 865-1375(1630)
21 1fch_A Peroxisomal targeting s 99.8 1.6E-19 5.5E-24 176.4 23.4 319 178-524 13-356 (368)
22 2xm6_A Protein corresponding t 99.8 6.5E-18 2.2E-22 171.5 34.8 332 179-526 56-431 (490)
23 1b89_A Protein (clathrin heavy 99.8 1E-18 3.5E-23 166.6 26.3 345 46-459 15-370 (449)
24 3mkr_A Coatomer subunit epsilo 99.8 7.1E-19 2.4E-23 164.7 22.1 246 237-525 8-262 (291)
25 4eqf_A PEX5-related protein; a 99.8 2.1E-19 7.1E-24 175.4 18.9 273 258-578 64-349 (365)
26 3mkr_A Coatomer subunit epsilo 99.8 3.2E-19 1.1E-23 167.0 18.2 218 333-581 37-260 (291)
27 4g1t_A Interferon-induced prot 99.8 3.8E-18 1.3E-22 172.7 27.4 352 134-525 50-457 (472)
28 4eqf_A PEX5-related protein; a 99.8 1E-18 3.6E-23 170.4 20.7 271 227-523 64-352 (365)
29 1b89_A Protein (clathrin heavy 99.8 1.4E-18 4.8E-23 165.7 20.5 379 147-572 15-404 (449)
30 2ooe_A Cleavage stimulation fa 99.8 1.8E-16 6E-21 162.7 37.1 412 88-526 2-491 (530)
31 3cv0_A Peroxisome targeting si 99.8 3.6E-18 1.2E-22 163.7 20.5 260 259-580 21-310 (327)
32 4g1t_A Interferon-induced prot 99.8 3E-17 1E-21 166.1 28.1 311 228-580 94-454 (472)
33 3cv0_A Peroxisome targeting si 99.8 6.4E-18 2.2E-22 161.9 22.0 274 227-524 20-312 (327)
34 2ooe_A Cleavage stimulation fa 99.8 3.6E-16 1.2E-20 160.4 33.8 405 64-496 12-495 (530)
35 3uq3_A Heat shock protein STI1 99.8 8.6E-17 2.9E-21 148.3 21.0 232 297-565 7-256 (258)
36 2pl2_A Hypothetical conserved 99.7 3.9E-17 1.3E-21 146.0 17.2 195 360-583 4-212 (217)
37 2pl2_A Hypothetical conserved 99.7 3.5E-16 1.2E-20 139.8 17.2 195 327-525 2-212 (217)
38 3u4t_A TPR repeat-containing p 99.7 1.2E-15 4.2E-20 141.8 19.6 240 304-571 12-270 (272)
39 3e4b_A ALGK; tetratricopeptide 99.7 1.4E-15 4.6E-20 152.0 20.4 337 172-524 9-384 (452)
40 2q7f_A YRRB protein; TPR, prot 99.7 3.8E-16 1.3E-20 142.5 14.7 216 329-571 22-242 (243)
41 1xnf_A Lipoprotein NLPI; TPR, 99.7 2.4E-15 8.3E-20 140.0 20.2 243 270-521 16-269 (275)
42 2h6f_A Protein farnesyltransfe 99.7 2.2E-15 7.6E-20 145.6 20.4 244 260-569 98-366 (382)
43 3uq3_A Heat shock protein STI1 99.7 2.6E-15 8.8E-20 138.3 18.3 236 260-507 6-256 (258)
44 3u4t_A TPR repeat-containing p 99.7 3.3E-15 1.1E-19 138.9 18.7 245 263-513 7-270 (272)
45 2vq2_A PILW, putative fimbrial 99.7 7.2E-15 2.5E-19 132.1 20.2 210 329-564 7-224 (225)
46 3e4b_A ALGK; tetratricopeptide 99.7 5.2E-15 1.8E-19 147.7 20.9 373 106-525 9-419 (452)
47 3sf4_A G-protein-signaling mod 99.7 1.7E-15 5.7E-20 149.9 17.1 298 261-576 11-367 (406)
48 2ho1_A Type 4 fimbrial biogene 99.7 1.2E-14 4.2E-19 133.3 21.4 207 330-562 37-249 (252)
49 1xnf_A Lipoprotein NLPI; TPR, 99.6 1.5E-15 5.1E-20 141.4 12.9 242 306-579 16-269 (275)
50 2ho1_A Type 4 fimbrial biogene 99.6 1.3E-14 4.5E-19 133.1 18.4 198 361-585 37-238 (252)
51 3spa_A Mtrpol, DNA-directed RN 99.6 1.1E-16 3.8E-21 164.8 4.6 146 35-180 128-286 (1134)
52 3vtx_A MAMA; tetratricopeptide 99.6 1.7E-14 5.9E-19 125.2 17.1 162 360-525 4-168 (184)
53 2q7f_A YRRB protein; TPR, prot 99.6 6.9E-15 2.4E-19 134.1 15.1 197 360-583 22-220 (243)
54 2h6f_A Protein farnesyltransfe 99.6 4.1E-14 1.4E-18 136.8 20.8 247 227-511 96-366 (382)
55 2vq2_A PILW, putative fimbrial 99.6 3.1E-14 1.1E-18 127.9 18.2 197 360-583 7-209 (225)
56 3spa_A Mtrpol, DNA-directed RN 99.6 9.2E-16 3.1E-20 158.1 8.7 123 327-450 124-254 (1134)
57 1ouv_A Conserved hypothetical 99.6 3.2E-13 1.1E-17 125.5 25.2 185 332-525 40-249 (273)
58 4abn_A Tetratricopeptide repea 99.6 5.1E-15 1.7E-19 148.8 13.0 189 360-577 101-313 (474)
59 1ouv_A Conserved hypothetical 99.6 9.2E-13 3.1E-17 122.4 26.3 225 258-496 5-254 (273)
60 4a1s_A PINS, partner of inscut 99.6 2.2E-14 7.4E-19 142.2 15.5 260 264-525 53-370 (411)
61 4i17_A Hypothetical protein; T 99.6 7.5E-14 2.6E-18 125.9 17.0 182 362-569 8-227 (228)
62 3vtx_A MAMA; tetratricopeptide 99.6 4.9E-14 1.7E-18 122.3 14.3 161 395-581 4-166 (184)
63 3ro2_A PINS homolog, G-protein 99.6 5.3E-14 1.8E-18 134.9 16.0 264 263-526 9-331 (338)
64 4abn_A Tetratricopeptide repea 99.6 4.7E-14 1.6E-18 141.7 15.5 194 327-524 99-318 (474)
65 3sf4_A G-protein-signaling mod 99.5 5.2E-14 1.8E-18 139.1 14.8 273 291-582 5-333 (406)
66 4a1s_A PINS, partner of inscut 99.5 1.1E-14 3.7E-19 144.4 9.1 273 295-586 48-373 (411)
67 2ond_A Cleavage stimulation fa 99.5 3.3E-12 1.1E-16 120.8 25.5 218 276-498 33-275 (308)
68 4gyw_A UDP-N-acetylglucosamine 99.5 9E-14 3.1E-18 145.1 15.7 157 397-580 10-169 (723)
69 3ro2_A PINS homolog, G-protein 99.5 4.6E-14 1.6E-18 135.4 11.8 273 296-587 6-334 (338)
70 3ulq_A Response regulator aspa 99.5 4.4E-13 1.5E-17 131.3 17.0 223 336-583 109-366 (383)
71 4e6h_A MRNA 3'-END-processing 99.5 2.4E-10 8.2E-15 117.9 36.0 421 63-508 64-584 (679)
72 3ulq_A Response regulator aspa 99.5 9.4E-13 3.2E-17 129.0 16.3 220 305-525 113-366 (383)
73 4ga2_A E3 SUMO-protein ligase 99.5 7.8E-14 2.7E-18 116.1 7.3 144 402-572 3-150 (150)
74 4gyw_A UDP-N-acetylglucosamine 99.5 6.9E-13 2.4E-17 138.5 16.0 161 360-525 8-172 (723)
75 2ond_A Cleavage stimulation fa 99.5 1.1E-11 3.8E-16 117.1 22.5 245 312-564 33-305 (308)
76 3nf1_A KLC 1, kinesin light ch 99.4 2E-13 7E-18 129.4 9.1 235 259-525 27-305 (311)
77 3as5_A MAMA; tetratricopeptide 99.4 6.3E-12 2.1E-16 108.8 15.6 158 365-525 12-171 (186)
78 3qky_A Outer membrane assembly 99.4 1.7E-11 5.7E-16 112.9 18.7 209 329-579 14-255 (261)
79 1hz4_A MALT regulatory protein 99.4 1.9E-10 6.4E-15 112.1 27.2 260 265-525 20-320 (373)
80 4e6h_A MRNA 3'-END-processing 99.4 1.1E-09 3.7E-14 113.1 33.2 430 80-528 47-571 (679)
81 3nf1_A KLC 1, kinesin light ch 99.4 7.7E-13 2.6E-17 125.4 9.0 221 362-582 28-304 (311)
82 4i17_A Hypothetical protein; T 99.4 1.8E-11 6E-16 110.2 17.4 205 293-509 5-225 (228)
83 3mv2_B Coatomer subunit epsilo 99.4 5.3E-11 1.8E-15 108.9 19.0 251 266-563 20-294 (310)
84 3q15_A PSP28, response regulat 99.4 3.3E-11 1.1E-15 117.6 19.2 222 336-582 107-362 (378)
85 3as5_A MAMA; tetratricopeptide 99.3 5E-11 1.7E-15 103.1 18.0 169 330-501 8-181 (186)
86 3q15_A PSP28, response regulat 99.3 1.5E-10 5.3E-15 112.9 21.3 233 265-525 107-363 (378)
87 1qqe_A Vesicular transport pro 99.3 2.6E-11 9E-16 113.5 14.8 170 345-525 32-226 (292)
88 3qou_A Protein YBBN; thioredox 99.3 1.7E-11 5.7E-16 114.4 13.2 161 393-579 114-278 (287)
89 1qqe_A Vesicular transport pro 99.3 2.8E-11 9.6E-16 113.3 14.8 218 310-566 32-284 (292)
90 4gco_A Protein STI-1; structur 99.3 1.7E-11 5.8E-16 98.3 11.4 115 428-566 8-125 (126)
91 1hz4_A MALT regulatory protein 99.3 3.7E-10 1.3E-14 109.9 22.4 264 300-581 19-318 (373)
92 3edt_B KLC 2, kinesin light ch 99.3 6.6E-12 2.3E-16 117.0 8.4 203 363-583 45-279 (283)
93 2pzi_A Probable serine/threoni 99.3 1.4E-11 4.8E-16 129.4 11.1 171 372-571 402-583 (681)
94 2r5s_A Uncharacterized protein 99.2 3.2E-11 1.1E-15 103.5 10.9 157 398-580 8-168 (176)
95 3qky_A Outer membrane assembly 99.2 1.3E-10 4.6E-15 106.8 15.1 166 395-584 14-223 (261)
96 2yhc_A BAMD, UPF0169 lipoprote 99.2 7.4E-11 2.5E-15 105.7 13.0 185 361-585 4-213 (225)
97 4ga2_A E3 SUMO-protein ligase 99.2 5.4E-12 1.8E-16 104.9 5.0 116 438-577 3-120 (150)
98 3edt_B KLC 2, kinesin light ch 99.2 1E-10 3.5E-15 108.8 12.5 221 306-526 12-280 (283)
99 2fo7_A Synthetic consensus TPR 99.2 7E-10 2.4E-14 90.0 14.0 125 399-525 4-130 (136)
100 2yhc_A BAMD, UPF0169 lipoprote 99.1 1.1E-09 3.8E-14 98.0 16.3 180 329-528 3-214 (225)
101 2vgx_A Chaperone SYCD; alterna 99.1 1.1E-10 3.6E-15 96.7 8.4 116 431-570 20-137 (148)
102 2pzi_A Probable serine/threoni 99.1 4.6E-10 1.6E-14 118.0 15.1 169 341-513 402-583 (681)
103 3mv2_B Coatomer subunit epsilo 99.1 5.8E-09 2E-13 95.4 20.1 239 240-501 25-290 (310)
104 2vsy_A XCC0866; transferase, g 99.1 5.5E-10 1.9E-14 115.3 14.3 149 374-526 2-156 (568)
105 3gyz_A Chaperone protein IPGC; 99.1 3.2E-11 1.1E-15 99.6 3.9 94 432-525 36-131 (151)
106 3qou_A Protein YBBN; thioredox 99.1 1.3E-09 4.5E-14 101.5 14.9 174 347-525 103-282 (287)
107 2lni_A Stress-induced-phosphop 99.1 1E-09 3.5E-14 88.8 12.1 118 430-571 14-133 (133)
108 2fo7_A Synthetic consensus TPR 99.1 3.6E-09 1.2E-13 85.7 15.4 131 363-496 3-135 (136)
109 3urz_A Uncharacterized protein 99.1 9.8E-10 3.4E-14 96.9 12.8 156 336-496 10-189 (208)
110 3rjv_A Putative SEL1 repeat pr 99.1 4.8E-09 1.6E-13 92.8 17.1 161 359-528 16-198 (212)
111 3gyz_A Chaperone protein IPGC; 99.1 4.4E-10 1.5E-14 92.7 9.6 105 392-498 31-138 (151)
112 2vyi_A SGTA protein; chaperone 99.1 1.5E-09 5E-14 87.5 12.4 119 431-573 11-131 (131)
113 2vsy_A XCC0866; transferase, g 99.1 4.4E-10 1.5E-14 116.1 11.4 147 409-581 2-153 (568)
114 2r5s_A Uncharacterized protein 99.1 9.3E-10 3.2E-14 94.2 11.6 158 363-525 8-171 (176)
115 3upv_A Heat shock protein STI1 99.1 1.1E-09 3.6E-14 87.9 11.0 114 432-569 4-125 (126)
116 3urz_A Uncharacterized protein 99.0 2.4E-09 8.3E-14 94.4 13.6 120 402-524 60-183 (208)
117 1na0_A Designed protein CTPR3; 99.0 2.6E-09 9E-14 85.2 12.5 115 432-570 9-125 (125)
118 3rjv_A Putative SEL1 repeat pr 99.0 2E-09 7E-14 95.1 12.5 159 378-569 3-175 (212)
119 1hh8_A P67PHOX, NCF-2, neutrop 99.0 1.7E-09 5.7E-14 95.9 11.6 141 434-583 8-148 (213)
120 1hh8_A P67PHOX, NCF-2, neutrop 99.0 1.3E-08 4.5E-13 90.1 17.4 123 398-525 8-148 (213)
121 2ifu_A Gamma-SNAP; membrane fu 99.0 5.6E-09 1.9E-13 98.4 15.6 218 272-519 4-253 (307)
122 2xcb_A PCRH, regulatory protei 99.0 1.6E-09 5.4E-14 89.0 10.3 114 432-569 18-133 (142)
123 3dra_A Protein farnesyltransfe 99.0 1.5E-08 5.1E-13 93.8 17.4 102 410-513 124-235 (306)
124 3dra_A Protein farnesyltransfe 99.0 8.7E-08 3E-12 88.7 22.5 213 275-525 49-285 (306)
125 4gco_A Protein STI-1; structur 99.0 3.4E-09 1.2E-13 84.7 10.7 115 392-508 8-125 (126)
126 2ifu_A Gamma-SNAP; membrane fu 99.0 2.4E-09 8.4E-14 100.8 10.7 196 308-525 4-222 (307)
127 1a17_A Serine/threonine protei 99.0 2E-09 6.9E-14 91.0 9.2 125 398-524 15-143 (166)
128 1elw_A TPR1-domain of HOP; HOP 98.9 7.3E-09 2.5E-13 81.6 11.7 112 432-567 4-117 (118)
129 2dba_A Smooth muscle cell asso 98.9 8.6E-09 3E-13 85.1 12.2 113 431-567 27-144 (148)
130 3sz7_A HSC70 cochaperone (SGT) 98.9 3.7E-09 1.3E-13 89.3 9.8 94 432-525 11-106 (164)
131 3u3w_A Transcriptional activat 98.9 5.8E-08 2E-12 90.7 18.9 159 367-525 81-264 (293)
132 2fbn_A 70 kDa peptidylprolyl i 98.9 6.5E-10 2.2E-14 97.3 4.9 144 407-576 15-176 (198)
133 1p5q_A FKBP52, FK506-binding p 98.9 1.7E-09 5.8E-14 103.1 8.0 87 465-575 197-283 (336)
134 2e2e_A Formate-dependent nitri 98.9 2.3E-09 7.9E-14 91.9 8.1 116 408-525 22-142 (177)
135 2vgx_A Chaperone SYCD; alterna 98.9 6.7E-10 2.3E-14 91.8 4.1 99 460-582 16-115 (148)
136 2l6j_A TPR repeat-containing p 98.9 5.6E-09 1.9E-13 81.4 9.2 100 463-586 3-108 (111)
137 2qfc_A PLCR protein; TPR, HTH, 98.9 2.6E-08 9.1E-13 93.1 15.4 163 363-525 77-264 (293)
138 4f3v_A ESX-1 secretion system 98.9 2.7E-08 9.1E-13 89.8 14.6 179 342-525 18-235 (282)
139 3rkv_A Putative peptidylprolyl 98.9 4.3E-09 1.5E-13 88.6 8.6 89 464-576 63-152 (162)
140 4gcn_A Protein STI-1; structur 98.9 1.2E-08 4.2E-13 81.6 10.1 93 433-525 9-110 (127)
141 3q49_B STIP1 homology and U bo 98.8 9.1E-09 3.1E-13 83.7 8.8 116 430-569 7-129 (137)
142 1a17_A Serine/threonine protei 98.8 3.7E-08 1.3E-12 83.0 12.6 130 361-493 13-146 (166)
143 2uy1_A Cleavage stimulation fa 98.8 2.6E-06 8.9E-11 85.3 27.7 365 78-492 7-412 (493)
144 1hxi_A PEX5, peroxisome target 98.8 1.1E-08 3.9E-13 81.0 8.3 91 435-525 20-112 (121)
145 2hr2_A Hypothetical protein; a 98.8 2.8E-09 9.6E-14 86.7 4.8 108 436-567 15-147 (159)
146 2c2l_A CHIP, carboxy terminus 98.8 8.4E-09 2.9E-13 95.6 8.3 188 330-527 4-199 (281)
147 3u3w_A Transcriptional activat 98.8 2.9E-08 9.8E-13 92.8 12.0 163 401-581 80-262 (293)
148 1hxi_A PEX5, peroxisome target 98.8 6.1E-09 2.1E-13 82.6 6.1 93 467-583 20-112 (121)
149 2lni_A Stress-induced-phosphop 98.8 4.1E-08 1.4E-12 79.1 11.3 117 395-513 15-133 (133)
150 3upv_A Heat shock protein STI1 98.8 8.1E-09 2.8E-13 82.7 6.9 95 464-582 4-98 (126)
151 2xcb_A PCRH, regulatory protei 98.8 7.8E-09 2.7E-13 84.8 6.8 105 454-582 6-112 (142)
152 1na0_A Designed protein CTPR3; 98.8 5.5E-08 1.9E-12 77.3 11.7 115 396-512 9-125 (125)
153 2vyi_A SGTA protein; chaperone 98.8 4.9E-08 1.7E-12 78.3 11.3 119 395-515 11-131 (131)
154 2xev_A YBGF; tetratricopeptide 98.8 3.8E-08 1.3E-12 79.0 10.1 110 437-570 7-124 (129)
155 1p5q_A FKBP52, FK506-binding p 98.8 6E-08 2.1E-12 92.4 12.7 128 398-525 149-292 (336)
156 4gcn_A Protein STI-1; structur 98.7 6.1E-09 2.1E-13 83.4 4.5 92 465-580 9-107 (127)
157 3k9i_A BH0479 protein; putativ 98.7 9.9E-09 3.4E-13 80.9 5.6 105 444-572 2-111 (117)
158 2qfc_A PLCR protein; TPR, HTH, 98.7 8.3E-08 2.8E-12 89.7 12.7 165 398-580 77-261 (293)
159 1elr_A TPR2A-domain of HOP; HO 98.7 4.3E-08 1.5E-12 78.7 9.3 116 432-572 4-128 (131)
160 2c2l_A CHIP, carboxy terminus 98.7 4.3E-08 1.5E-12 90.8 10.3 176 361-569 4-182 (281)
161 1kt0_A FKBP51, 51 kDa FK506-bi 98.7 2.8E-08 9.5E-13 99.1 9.4 129 396-524 268-412 (457)
162 3sz7_A HSC70 cochaperone (SGT) 98.7 1.9E-08 6.5E-13 84.8 6.8 96 463-582 10-105 (164)
163 3q49_B STIP1 homology and U bo 98.7 3.6E-08 1.2E-12 80.1 7.9 97 462-582 7-103 (137)
164 3q7a_A Farnesyltransferase alp 98.7 1.1E-06 3.7E-11 82.2 18.1 175 370-572 63-258 (349)
165 1ihg_A Cyclophilin 40; ppiase 98.7 5.8E-08 2E-12 93.5 9.9 89 463-575 272-360 (370)
166 4f3v_A ESX-1 secretion system 98.7 6.1E-08 2.1E-12 87.5 9.2 138 364-506 105-249 (282)
167 1dce_A Protein (RAB geranylger 98.7 3.4E-07 1.2E-11 93.2 15.8 172 375-574 43-244 (567)
168 3q7a_A Farnesyltransferase alp 98.7 6.8E-07 2.3E-11 83.5 16.3 234 343-588 67-334 (349)
169 2kck_A TPR repeat; tetratricop 98.6 1.2E-07 4.2E-12 73.6 9.3 94 432-525 6-104 (112)
170 2kck_A TPR repeat; tetratricop 98.6 3.6E-08 1.2E-12 76.7 6.1 100 463-586 5-107 (112)
171 1wao_1 Serine/threonine protei 98.6 6.4E-08 2.2E-12 96.8 9.2 119 438-580 12-134 (477)
172 1elw_A TPR1-domain of HOP; HOP 98.6 3.8E-07 1.3E-11 71.4 12.0 111 396-508 4-116 (118)
173 2e2e_A Formate-dependent nitri 98.6 2.1E-07 7.2E-12 79.4 11.2 127 372-501 21-152 (177)
174 1na3_A Designed protein CTPR2; 98.6 1.2E-07 4.2E-12 70.4 8.6 83 464-570 9-91 (91)
175 3gw4_A Uncharacterized protein 98.6 6.6E-07 2.3E-11 78.2 14.4 152 373-525 4-174 (203)
176 3dss_A Geranylgeranyl transfer 98.6 7.6E-06 2.6E-10 76.1 21.6 193 347-566 91-319 (331)
177 2fbn_A 70 kDa peptidylprolyl i 98.6 2E-07 6.8E-12 81.3 10.4 93 433-525 89-184 (198)
178 2if4_A ATFKBP42; FKBP-like, al 98.6 4.8E-08 1.6E-12 93.1 6.7 133 396-569 179-311 (338)
179 3gw4_A Uncharacterized protein 98.6 4.5E-07 1.6E-11 79.2 12.3 153 342-494 4-177 (203)
180 2dba_A Smooth muscle cell asso 98.6 7.5E-07 2.6E-11 73.2 12.5 113 395-510 27-145 (148)
181 2xev_A YBGF; tetratricopeptide 98.5 1.6E-07 5.4E-12 75.3 7.5 95 468-586 6-106 (129)
182 2hr2_A Hypothetical protein; a 98.5 8E-08 2.8E-12 78.1 5.7 100 465-581 12-127 (159)
183 2uy1_A Cleavage stimulation fa 98.5 9.5E-06 3.3E-10 81.2 21.5 120 399-525 289-411 (493)
184 1kt0_A FKBP51, 51 kDa FK506-bi 98.5 1.2E-06 4.2E-11 87.1 13.9 129 360-492 267-414 (457)
185 1zu2_A Mitochondrial import re 98.5 7.7E-08 2.7E-12 78.0 3.6 62 480-565 62-134 (158)
186 2if4_A ATFKBP42; FKBP-like, al 98.5 2.8E-07 9.7E-12 87.7 7.9 145 361-525 179-326 (338)
187 3dss_A Geranylgeranyl transfer 98.4 4.1E-05 1.4E-09 71.2 21.9 231 270-508 40-319 (331)
188 3k9i_A BH0479 protein; putativ 98.4 2.6E-08 9E-13 78.4 0.0 83 476-582 2-87 (117)
189 3rkv_A Putative peptidylprolyl 98.4 1.9E-07 6.3E-12 78.5 5.1 94 464-581 11-122 (162)
190 1wao_1 Serine/threonine protei 98.4 5.2E-07 1.8E-11 90.2 8.4 120 402-523 12-135 (477)
191 1elr_A TPR2A-domain of HOP; HO 98.4 7.5E-07 2.6E-11 71.2 7.6 110 398-510 6-124 (131)
192 4b4t_Q 26S proteasome regulato 98.4 3.1E-06 1.1E-10 83.9 13.1 162 364-525 58-243 (434)
193 4b4t_Q 26S proteasome regulato 98.4 1.4E-06 4.7E-11 86.4 10.6 158 368-525 11-202 (434)
194 3ro3_A PINS homolog, G-protein 98.3 9.7E-07 3.3E-11 73.7 7.6 127 399-525 12-156 (164)
195 1ihg_A Cyclophilin 40; ppiase 98.3 2.4E-06 8.2E-11 82.2 11.0 90 431-520 272-363 (370)
196 3ma5_A Tetratricopeptide repea 98.3 2.7E-06 9.2E-11 64.4 8.7 88 463-574 6-95 (100)
197 1dce_A Protein (RAB geranylger 98.3 2.1E-05 7E-10 80.1 17.3 169 345-516 44-244 (567)
198 2kat_A Uncharacterized protein 98.3 3.1E-06 1.1E-10 66.1 8.4 76 450-525 3-80 (115)
199 2l6j_A TPR repeat-containing p 98.2 3.6E-07 1.2E-11 70.8 2.7 95 430-524 2-104 (111)
200 3n71_A Histone lysine methyltr 98.2 6.1E-06 2.1E-10 81.9 11.4 125 405-529 318-466 (490)
201 3ro3_A PINS homolog, G-protein 98.2 8.4E-06 2.9E-10 67.8 9.6 133 363-495 11-160 (164)
202 2kc7_A BFR218_protein; tetratr 98.2 5.6E-06 1.9E-10 62.5 7.6 77 471-571 7-86 (99)
203 2kat_A Uncharacterized protein 98.1 1.9E-06 6.6E-11 67.3 4.9 77 482-582 3-79 (115)
204 1zu2_A Mitochondrial import re 98.1 3.3E-07 1.1E-11 74.3 0.4 81 476-580 14-115 (158)
205 1na3_A Designed protein CTPR2; 98.1 9.4E-06 3.2E-10 59.9 7.8 81 432-512 9-91 (91)
206 3lvg_A Clathrin heavy chain 1; 98.0 2.7E-06 9.2E-11 80.5 4.4 411 135-588 54-525 (624)
207 3bee_A Putative YFRE protein; 98.0 4.2E-05 1.4E-09 56.4 9.7 68 461-528 3-73 (93)
208 3n71_A Histone lysine methyltr 98.0 5.5E-06 1.9E-10 82.2 5.4 124 440-579 317-458 (490)
209 1klx_A Cysteine rich protein B 97.9 7.5E-05 2.6E-09 60.2 10.1 89 438-528 31-127 (138)
210 1pc2_A Mitochondria fission pr 97.9 3.9E-05 1.3E-09 61.4 7.8 88 461-572 29-121 (152)
211 3ma5_A Tetratricopeptide repea 97.9 6.4E-06 2.2E-10 62.3 2.8 65 493-581 2-66 (100)
212 3qww_A SET and MYND domain-con 97.8 7.6E-05 2.6E-09 72.7 9.2 103 444-565 310-430 (433)
213 3lvg_A Clathrin heavy chain 1; 97.8 5.3E-05 1.8E-09 71.9 7.7 234 33-280 53-325 (624)
214 1klx_A Cysteine rich protein B 97.7 0.00037 1.3E-08 56.0 11.8 112 375-495 9-128 (138)
215 2kc7_A BFR218_protein; tetratr 97.7 3E-05 1E-09 58.3 3.7 79 438-524 6-87 (99)
216 3qwp_A SET and MYND domain-con 97.6 0.00034 1.2E-08 68.3 11.8 87 439-525 294-398 (429)
217 2v5f_A Prolyl 4-hydroxylase su 97.6 0.00024 8.2E-09 53.9 7.8 83 463-569 4-93 (104)
218 3ly7_A Transcriptional activat 97.4 0.0011 3.7E-08 61.9 11.5 64 461-525 274-337 (372)
219 3ly7_A Transcriptional activat 97.4 0.0033 1.1E-07 58.7 14.5 138 359-498 192-344 (372)
220 3qww_A SET and MYND domain-con 97.4 0.00071 2.4E-08 65.9 10.1 94 408-501 310-424 (433)
221 1nzn_A CGI-135 protein, fissio 97.4 0.00069 2.4E-08 52.0 7.8 88 461-572 32-124 (126)
222 3qwp_A SET and MYND domain-con 97.3 0.0014 4.9E-08 63.9 11.5 100 403-502 294-414 (429)
223 1qsa_A Protein (soluble lytic 97.3 0.2 6.9E-06 50.9 28.4 114 375-492 228-347 (618)
224 3u64_A Protein TP_0956; tetrat 97.3 0.00075 2.6E-08 60.2 8.1 87 448-534 179-276 (301)
225 1wy6_A Hypothetical protein ST 97.1 0.011 3.8E-07 45.2 11.9 142 371-531 17-158 (172)
226 3bee_A Putative YFRE protein; 97.1 0.0003 1E-08 51.8 3.3 66 494-583 2-70 (93)
227 3u64_A Protein TP_0956; tetrat 96.9 0.0075 2.6E-07 53.9 11.2 114 444-581 133-265 (301)
228 3mkq_A Coatomer beta'-subunit; 96.9 0.096 3.3E-06 56.1 22.2 153 174-354 607-760 (814)
229 1y8m_A FIS1; mitochondria, unk 96.9 0.014 4.8E-07 45.6 10.9 88 461-572 36-127 (144)
230 2v5f_A Prolyl 4-hydroxylase su 96.8 0.0054 1.9E-07 46.2 8.3 71 435-505 8-87 (104)
231 1pc2_A Mitochondria fission pr 96.7 0.0035 1.2E-07 50.2 6.5 87 411-499 13-106 (152)
232 3mkq_A Coatomer beta'-subunit; 96.6 0.016 5.6E-07 62.1 13.7 98 341-459 610-708 (814)
233 3o48_A Mitochondria fission 1 96.6 0.0039 1.3E-07 48.0 6.1 88 461-572 37-128 (134)
234 3ffl_A Anaphase-promoting comp 96.0 0.045 1.5E-06 44.1 9.2 132 398-566 22-165 (167)
235 3mkq_B Coatomer subunit alpha; 95.8 0.32 1.1E-05 39.9 13.8 101 341-459 16-116 (177)
236 1nzn_A CGI-135 protein, fissio 95.5 0.12 4.2E-06 39.6 9.5 90 410-501 15-111 (126)
237 4gns_B Protein CSD3, chitin bi 94.9 0.082 2.8E-06 54.7 9.1 54 472-525 345-398 (754)
238 3mkq_B Coatomer subunit alpha; 94.7 1.5 5.1E-05 36.0 18.3 130 303-459 13-142 (177)
239 4ady_A RPN2, 26S proteasome re 94.5 6 0.00021 42.0 26.4 27 35-61 231-257 (963)
240 1wy6_A Hypothetical protein ST 94.5 1.3 4.3E-05 34.2 14.3 140 269-428 17-156 (172)
241 3ltm_A Alpha-REP4; protein eng 94.0 2.6 8.9E-05 36.0 19.5 124 163-287 61-184 (211)
242 3lpz_A GET4 (YOR164C homolog); 93.3 4.8 0.00016 36.9 16.9 113 35-158 36-159 (336)
243 4h7y_A Dual specificity protei 93.1 0.2 7E-06 39.4 6.0 99 395-496 12-126 (161)
244 4h7y_A Dual specificity protei 93.1 0.68 2.3E-05 36.5 8.9 98 358-458 10-120 (161)
245 3ltj_A Alpharep-4; protein eng 93.1 3.6 0.00012 34.7 19.8 80 164-243 57-136 (201)
246 1zbp_A Hypothetical protein VP 91.5 0.57 2E-05 41.2 7.6 53 473-525 6-58 (273)
247 3ffl_A Anaphase-promoting comp 91.4 1.3 4.6E-05 35.6 9.0 24 436-459 126-149 (167)
248 4ady_A RPN2, 26S proteasome re 90.9 19 0.00065 38.4 27.8 253 206-466 383-663 (963)
249 1y8m_A FIS1; mitochondria, unk 90.8 1.8 6.1E-05 33.8 8.9 71 429-499 36-112 (144)
250 1oyz_A Hypothetical protein YI 90.6 9 0.00031 34.3 17.8 18 164-181 140-157 (280)
251 4b4t_P 26S proteasome regulato 90.1 9.2 0.00031 37.2 15.7 186 272-458 29-244 (445)
252 2wpv_A GET4, UPF0363 protein Y 90.0 11 0.00037 34.3 19.6 184 204-425 20-217 (312)
253 2ff4_A Probable regulatory pro 89.6 0.67 2.3E-05 44.3 7.1 66 468-533 175-245 (388)
254 3ltm_A Alpha-REP4; protein eng 89.6 8.8 0.0003 32.5 20.0 161 157-323 24-184 (211)
255 1v54_E Cytochrome C oxidase po 88.8 2.4 8.3E-05 30.6 7.5 63 376-440 25-87 (109)
256 3o48_A Mitochondria fission 1 87.8 2.5 8.7E-05 32.5 7.7 71 429-499 37-113 (134)
257 3lpz_A GET4 (YOR164C homolog); 87.6 17 0.00058 33.4 21.3 182 205-424 20-215 (336)
258 2ff4_A Probable regulatory pro 87.4 3.7 0.00013 39.1 10.7 70 365-435 175-248 (388)
259 3txn_A 26S proteasome regulato 87.3 20 0.00069 33.9 21.3 59 264-323 104-167 (394)
260 4gns_B Protein CSD3, chitin bi 87.3 5.3 0.00018 41.5 12.2 52 406-459 347-398 (754)
261 2wpv_A GET4, UPF0363 protein Y 87.2 17 0.00059 33.0 18.3 114 332-456 35-158 (312)
262 1v54_E Cytochrome C oxidase po 87.1 2.6 8.9E-05 30.5 6.8 63 80-143 25-87 (109)
263 1zbp_A Hypothetical protein VP 86.7 4.8 0.00016 35.5 9.8 123 369-502 5-138 (273)
264 3ltj_A Alpharep-4; protein eng 86.7 13 0.00044 31.1 19.7 159 158-322 20-178 (201)
265 4fhn_B Nucleoporin NUP120; pro 84.8 13 0.00045 41.3 14.8 185 202-389 817-1049(1139)
266 4b4t_P 26S proteasome regulato 84.4 31 0.0011 33.4 21.7 195 242-456 30-262 (445)
267 2uwj_G Type III export protein 84.0 9.9 0.00034 27.4 8.8 86 310-400 21-106 (115)
268 4fhn_B Nucleoporin NUP120; pro 83.7 6.7 0.00023 43.6 11.9 63 466-528 901-968 (1139)
269 2p58_C Putative type III secre 83.3 11 0.00036 27.2 9.2 85 311-400 23-107 (116)
270 2y69_E Cytochrome C oxidase su 83.0 7 0.00024 30.0 7.8 63 376-440 68-130 (152)
271 1qsa_A Protein (soluble lytic 81.1 50 0.0017 33.5 31.2 170 344-526 228-409 (618)
272 2y69_E Cytochrome C oxidase su 80.4 6.3 0.00021 30.3 6.8 63 80-143 68-130 (152)
273 2uwj_G Type III export protein 79.2 15 0.00053 26.4 8.5 78 113-194 19-96 (115)
274 2p58_C Putative type III secre 78.7 16 0.00055 26.3 9.5 79 113-195 20-98 (116)
275 4b4t_R RPN7, 26S proteasome re 74.5 14 0.00048 35.6 9.6 95 332-426 133-238 (429)
276 3esl_A Checkpoint serine/threo 73.1 25 0.00084 29.4 9.2 29 465-493 116-144 (202)
277 4b4t_S RPN3, 26S proteasome re 72.4 22 0.00075 34.8 10.1 66 432-497 231-303 (523)
278 3kea_A K1L; tropism, ANK repea 68.2 30 0.001 30.9 9.9 134 19-161 13-152 (285)
279 1oyz_A Hypothetical protein YI 67.2 67 0.0023 28.3 20.2 146 32-179 35-186 (280)
280 4a1g_A Mitotic checkpoint seri 65.3 45 0.0015 26.4 8.8 47 483-529 84-132 (152)
281 1ya0_A SMG-7 transcript varian 64.4 37 0.0012 33.4 10.0 56 470-525 158-213 (497)
282 2qx5_A Nucleoporin NIC96; mRNA 64.1 1.3E+02 0.0045 30.7 14.4 80 203-285 300-382 (661)
283 4b4t_R RPN7, 26S proteasome re 62.2 65 0.0022 30.9 11.4 62 261-323 133-196 (429)
284 2wvi_A Mitotic checkpoint seri 56.5 57 0.002 26.2 8.1 29 465-493 97-125 (164)
285 3bqo_A Telomeric repeat-bindin 55.7 37 0.0013 28.1 6.8 72 448-519 94-172 (211)
286 2nsz_A Programmed cell death p 53.6 54 0.0019 25.1 7.4 64 333-396 10-78 (129)
287 3txn_A 26S proteasome regulato 50.7 1.7E+02 0.0057 27.7 27.7 284 232-528 23-344 (394)
288 2d2s_A Exocyst complex compone 50.1 56 0.0019 28.2 7.7 30 429-458 88-117 (235)
289 1n11_A Ankyrin; clathrin, BAND 50.0 1.7E+02 0.0059 27.7 14.8 204 40-253 17-234 (437)
290 3kae_A CDC27, possible protein 45.6 1.2E+02 0.0041 24.5 10.4 80 442-524 43-140 (242)
291 2ion_A PDCD4, programmed cell 44.6 51 0.0017 26.2 6.1 64 333-396 12-80 (152)
292 4gq2_M Nucleoporin NUP120; bet 44.4 93 0.0032 33.6 10.0 85 402-492 816-925 (950)
293 2d2s_A Exocyst complex compone 44.1 74 0.0025 27.4 7.5 87 70-159 23-115 (235)
294 2wvi_A Mitotic checkpoint seri 44.0 94 0.0032 25.0 7.5 56 82-137 77-133 (164)
295 2r9g_A AAA ATPase, central reg 44.0 1.4E+02 0.0048 24.8 9.1 47 364-411 14-63 (204)
296 3b7b_A Euchromatic histone-lys 43.0 1.5E+02 0.0051 24.9 10.5 41 21-61 26-68 (237)
297 3eu9_A Huntingtin-interacting 42.9 1.5E+02 0.0051 24.9 10.3 41 21-61 24-66 (240)
298 3mv2_A Coatomer subunit alpha; 42.0 1.9E+02 0.0064 26.3 9.9 58 455-526 196-255 (325)
299 4aez_C MAD3, mitotic spindle c 41.1 52 0.0018 28.0 5.9 43 483-525 133-177 (223)
300 2nsz_A Programmed cell death p 40.5 1.2E+02 0.0041 23.1 8.6 62 232-294 11-77 (129)
301 3eu9_A Huntingtin-interacting 40.1 1.6E+02 0.0056 24.6 11.7 111 41-160 13-131 (240)
302 2ion_A PDCD4, programmed cell 40.1 1.1E+02 0.0036 24.3 7.3 58 232-289 13-75 (152)
303 1wdy_A 2-5A-dependent ribonucl 39.9 1.8E+02 0.0063 25.1 10.7 22 40-61 8-29 (285)
304 3kea_A K1L; tropism, ANK repea 39.3 1.2E+02 0.004 26.9 8.6 131 20-159 45-182 (285)
305 2fu4_A Ferric uptake regulatio 38.1 76 0.0026 21.6 5.7 61 89-150 6-67 (83)
306 4aez_C MAD3, mitotic spindle c 37.5 1.4E+02 0.0049 25.3 7.9 53 82-134 131-184 (223)
307 2qx5_A Nucleoporin NIC96; mRNA 37.0 3.6E+02 0.012 27.6 13.0 89 236-328 451-568 (661)
308 3aji_A 26S proteasome non-ATPa 36.9 1.7E+02 0.006 24.4 9.2 111 40-160 9-128 (231)
309 1te4_A Conserved protein MTH18 36.5 45 0.0016 25.3 4.7 50 194-243 53-102 (131)
310 4b4t_S RPN3, 26S proteasome re 36.2 57 0.002 32.0 6.1 61 464-526 231-298 (523)
311 3ctd_A Putative ATPase, AAA fa 35.7 2E+02 0.0067 24.2 8.4 48 363-410 34-84 (213)
312 3ljn_A Hypothetical protein; a 33.9 2.3E+02 0.0079 25.9 10.1 206 39-253 22-266 (364)
313 3hra_A Ankyrin repeat family p 33.8 1.9E+02 0.0065 23.4 9.8 51 39-90 41-94 (201)
314 3bge_A Predicted ATPase; struc 33.3 1.7E+02 0.0059 24.2 7.5 90 367-457 10-107 (201)
315 3ljn_A Hypothetical protein; a 33.3 2.7E+02 0.0094 25.4 10.5 178 64-254 17-234 (364)
316 3i5p_A Nucleoporin NUP170; hel 33.1 3.7E+02 0.012 26.5 12.0 68 461-528 175-247 (525)
317 4b93_B Ankyrin repeat domain-c 29.9 2.4E+02 0.0082 24.6 9.0 17 176-192 192-208 (269)
318 1wdy_A 2-5A-dependent ribonucl 29.6 2.7E+02 0.0093 23.9 12.5 195 19-224 52-277 (285)
319 1n11_A Ankyrin; clathrin, BAND 29.4 3.6E+02 0.012 25.3 13.7 224 20-255 28-269 (437)
320 4gq2_M Nucleoporin NUP120; bet 29.4 5.2E+02 0.018 27.9 12.8 52 234-286 816-867 (950)
321 4g8k_A 2-5A-dependent ribonucl 28.8 3.2E+02 0.011 24.5 12.3 36 122-160 288-323 (337)
322 3ygs_P Procaspase 9; apoptosis 28.5 75 0.0026 22.8 4.3 37 344-380 51-87 (97)
323 3esl_A Checkpoint serine/threo 27.8 2.7E+02 0.0091 23.2 12.4 57 272-329 92-149 (202)
324 1k1a_A B-cell lymphoma 3-encod 27.1 2.7E+02 0.0094 23.2 11.4 20 76-95 17-36 (241)
325 2w57_A Ferric uptake regulatio 27.1 1.6E+02 0.0055 23.1 6.4 62 89-151 6-68 (150)
326 1ug3_A EIF4GI, eukaryotic prot 27.0 3.1E+02 0.011 25.0 9.4 25 171-195 16-40 (339)
327 1k1a_A B-cell lymphoma 3-encod 26.5 2.8E+02 0.0096 23.1 14.3 142 13-160 20-172 (241)
328 1wgl_A TOLL-interacting protei 26.2 62 0.0021 20.7 3.0 22 510-531 35-56 (59)
329 2crb_A Nuclear receptor bindin 25.9 75 0.0026 22.4 3.5 25 500-524 17-41 (97)
330 2rfa_A Transient receptor pote 25.8 2.9E+02 0.0098 23.0 8.6 15 20-34 89-103 (232)
331 1oai_A Nuclear RNA export fact 25.4 60 0.0021 20.7 2.9 25 271-295 32-56 (59)
332 2fe3_A Peroxide operon regulat 25.0 1.1E+02 0.0038 23.8 5.1 61 90-151 12-72 (145)
333 2fe3_A Peroxide operon regulat 24.6 1.7E+02 0.0058 22.7 6.1 12 411-422 36-47 (145)
334 2b7e_A PRE-mRNA processing pro 24.2 77 0.0026 20.3 3.1 30 81-110 2-31 (59)
335 3ygs_P Procaspase 9; apoptosis 23.8 87 0.003 22.4 3.9 37 48-84 51-87 (97)
336 3twr_A Tankyrase-2; ankyrin re 23.6 2.6E+02 0.0088 21.6 8.8 112 40-160 11-130 (165)
337 1bpo_A Protein (clathrin); cla 23.4 5.1E+02 0.017 25.0 11.4 129 321-459 352-483 (494)
338 2cfu_A SDSA1; SDS-hydrolase, l 23.4 1.1E+02 0.0038 31.3 6.0 62 448-512 436-497 (658)
339 3qye_A TBC1 domain family memb 23.2 4.2E+02 0.014 24.0 9.5 128 80-211 164-308 (331)
340 1mzb_A Ferric uptake regulatio 22.7 1.6E+02 0.0055 22.5 5.6 60 90-150 8-68 (136)
341 2rfa_A Transient receptor pote 22.5 3.2E+02 0.011 22.7 8.2 162 21-192 18-220 (232)
342 3jxi_A Vanilloid receptor-rela 22.2 3.6E+02 0.012 22.9 9.5 47 13-59 16-71 (260)
343 3bqo_A Telomeric repeat-bindin 21.7 2.3E+02 0.0078 23.5 6.2 44 50-93 94-145 (211)
344 2o03_A Probable zinc uptake re 21.6 1E+02 0.0036 23.4 4.2 36 114-149 24-59 (131)
345 3aji_A 26S proteasome non-ATPa 20.9 3.6E+02 0.012 22.3 9.3 84 71-160 9-95 (231)
346 3kae_A CDC27, possible protein 20.9 3.4E+02 0.012 22.0 15.5 80 341-422 44-140 (242)
347 3t8k_A Uncharacterized protein 20.8 3.3E+02 0.011 21.9 7.8 92 43-135 12-109 (186)
348 2xig_A Ferric uptake regulatio 20.1 2.5E+02 0.0084 21.9 6.3 13 377-389 42-54 (150)
No 1
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=4.2e-45 Score=382.96 Aligned_cols=492 Identities=10% Similarity=-0.036 Sum_probs=411.6
Q ss_pred HHHHccCChhHHHHHhhcCCCCCcccHHHHHHHHHcCCChhHHHHHHHHhhhCCCCCCcccHHHHHHHHhccCChHHHHH
Q 007808 42 TACAQLKQMTYARKMFDKITDQNVVSWNAMFNGYAQNEFHRTVVVLFTQMKKLDAMPNCFTFPIVLKSCVKINALREGEE 121 (589)
Q Consensus 42 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~ 121 (589)
..+.+.|.+..+...+..++.++...|+.++..+.+.|++++|+.+|++|.+. .|+..++..++.+|.+.|++++|.+
T Consensus 61 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~l~~~~~~~g~~~~A~~ 138 (597)
T 2xpi_A 61 NNTSTDGSFLKERNAQNTDSLSREDYLRLWRHDALMQQQYKCAAFVGEKVLDI--TGNPNDAFWLAQVYCCTGDYARAKC 138 (597)
T ss_dssp ---------------------CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred ccccccCccCCCCCccccchHHHHHHHHHHHHHHHHccCchHHHHHHHHHHhh--CCCchHHHHHHHHHHHcCcHHHHHH
Confidence 34566788888889998888889999999999999999999999999999854 5788899999999999999999999
Q ss_pred HHHHHHHhCCCCchHHHhHHHHHHHcCCChHHHHHHHccCCCC-------------------CeehHHHHHHHHHhCCCH
Q 007808 122 LHCLVLKNGFRANIFVGTALIELYSTGKAIEAAYKVFGEMDER-------------------NVVVWTSMINGYISCGDI 182 (589)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-------------------~~~~~~~l~~~~~~~g~~ 182 (589)
+|+.+... +++..+++.++.+|.+.|++++|+++|+++... +..+|+.++.+|.+.|++
T Consensus 139 ~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 216 (597)
T 2xpi_A 139 LLTKEDLY--NRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNF 216 (597)
T ss_dssp HHHHTCGG--GTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHhcc--ccchhHHHHHHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCH
Confidence 99988653 678899999999999999999999999965443 367899999999999999
Q ss_pred HHHHHHHHhCCCC---ChhHHHHHHHHHhcCCChHHHHHH---hcccCC----CChhhHHHHHHHHHhcCCHHHHHHHHh
Q 007808 183 VSARCLFELAPER---DVILWNTIVSGYIDVRNMIEARKL---FDQMPK----KDVISWNTMLSGYANNGDVEECKRLFE 252 (589)
Q Consensus 183 ~~a~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~a~~~---~~~~~~----~~~~~~~~l~~~~~~~~~~~~A~~~~~ 252 (589)
++|.+.|+++.+. +...+..+...+...+..+.+... +..+.. ....+|+.++..|.+.|++++|.++|+
T Consensus 217 ~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~ 296 (597)
T 2xpi_A 217 DRAKECYKEALMVDAKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLS 296 (597)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCchhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHH
Confidence 9999999988643 445566666555444333222111 222211 233456667888999999999999999
Q ss_pred hCCC--CCchhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCh
Q 007808 253 EMPE--RNVFSWNGLIGGYANNGLFFEVLDAFKRMLTEGRVFPNDATIVTVLSACARLGALDFSKWVHVYAEYNGYQGNV 330 (589)
Q Consensus 253 ~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 330 (589)
++.+ ++..+|+.++.+|.+.|++++|+++|+++.+.+ +.+..++..++.++.+.|++++|..+++.+.+.. +.+.
T Consensus 297 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~ 373 (597)
T 2xpi_A 297 SINGLEKSSDLLLCKADTLFVRSRFIDVLAITTKILEID--PYNLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEKA 373 (597)
T ss_dssp TSTTGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSH
T ss_pred HhhcCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcC--cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cccH
Confidence 9998 789999999999999999999999999999876 3467789999999999999999999999998764 6688
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHhhCC---CCCcchHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHh
Q 007808 331 CVGNALIDMYAKCGIIENAVDVFNSMD---TKDLITWNTIISGLAMHGRGAGALSLFHEMKNAGEMPDGITFIGILCACT 407 (589)
Q Consensus 331 ~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~ 407 (589)
.+++.++.+|.+.|++++|.++|+++. ..+..+|+.++.+|.+.|++++|+++|+++.+.+ +.+..++..++.+|.
T Consensus 374 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~ 452 (597)
T 2xpi_A 374 VTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGMQHM 452 (597)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHH
Confidence 899999999999999999999999875 3467899999999999999999999999999863 457889999999999
Q ss_pred ccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHhhC-------CCCCC--HHHHHHHHHHHhcCC
Q 007808 408 HMGLVEEGLSYFQSMAMDYSIVPQIEHYGCMVDLLARAGRLAEAVDFVKRM-------PIEAD--AVIWANLLGSCRVYK 478 (589)
Q Consensus 408 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-------~~~p~--~~~~~~l~~~~~~~g 478 (589)
+.|++++|.++|+++.+. .+.+..+|+.++.+|.+.|++++|+++|+++ +..|+ ..+|..++.+|.+.|
T Consensus 453 ~~g~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g 530 (597)
T 2xpi_A 453 QLGNILLANEYLQSSYAL--FQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLK 530 (597)
T ss_dssp HHTCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTT
T ss_pred HcCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhc
Confidence 999999999999999764 3456889999999999999999999999988 34777 789999999999999
Q ss_pred CHHHHHHHHHHHHccCCCCCcchHHHHHHHhhcCChHHHHHHHHHhhhCCCccCCccceeeeCCeeeeeccccCCCchHH
Q 007808 479 NVELAELALERLTELEPKNPANFVMLSNIYGDLGRWKDVARIKVAMRDTGFKKLPGCSSIEVNEVVMLGCLSRELDRKSI 558 (589)
Q Consensus 479 ~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 558 (589)
++++|.+.++++++++|+++.+|..++.+|.+.|++++|.+.++++. +++|+++.+
T Consensus 531 ~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l------------------------~~~p~~~~~ 586 (597)
T 2xpi_A 531 MYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESL------------------------AISPNEIMA 586 (597)
T ss_dssp CHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH------------------------HHCTTCHHH
T ss_pred CHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHH------------------------hcCCCChHH
Confidence 99999999999999999999999999999999999999999999996 789999999
Q ss_pred HHHHHHHHH
Q 007808 559 VRAEANMIK 567 (589)
Q Consensus 559 ~~~l~~~~~ 567 (589)
+..|+++|.
T Consensus 587 ~~~l~~~~~ 595 (597)
T 2xpi_A 587 SDLLKRALE 595 (597)
T ss_dssp HHHHHHTTC
T ss_pred HHHHHHHHh
Confidence 999999984
No 2
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=4.7e-40 Score=344.64 Aligned_cols=473 Identities=9% Similarity=-0.029 Sum_probs=404.6
Q ss_pred CCccchHHHHHHHHccCChhHHHHHhhcCCC--CCcccHHHHHHHHHcCCChhHHHHHHHHhhhCCCCCCcccHHHHHHH
Q 007808 32 KSDYITPRIITACAQLKQMTYARKMFDKITD--QNVVSWNAMFNGYAQNEFHRTVVVLFTQMKKLDAMPNCFTFPIVLKS 109 (589)
Q Consensus 32 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~ 109 (589)
++...|+.++..|.+.|++++|..+|+++.. |+..++..++.+|.+.|++++|..+|+.+... +++..+++.++.+
T Consensus 82 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~ 159 (597)
T 2xpi_A 82 SREDYLRLWRHDALMQQQYKCAAFVGEKVLDITGNPNDAFWLAQVYCCTGDYARAKCLLTKEDLY--NRSSACRYLAAFC 159 (597)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCGG--GTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccCchHHHHHHHHHHhhCCCchHHHHHHHHHHHcCcHHHHHHHHHHHhcc--ccchhHHHHHHHH
Confidence 5677899999999999999999999999864 78889999999999999999999999998653 6788899999999
Q ss_pred HhccCChHHHHHHHHHHHHh---------------CCCCchHHHhHHHHHHHcCCChHHHHHHHccCCCC---CeehHHH
Q 007808 110 CVKINALREGEELHCLVLKN---------------GFRANIFVGTALIELYSTGKAIEAAYKVFGEMDER---NVVVWTS 171 (589)
Q Consensus 110 ~~~~~~~~~a~~~~~~~~~~---------------~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~ 171 (589)
+.+.|++++|.++|+++... |.+++..+++.++.+|.+.|++++|++.|+++.+. +...+..
T Consensus 160 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~ 239 (597)
T 2xpi_A 160 LVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAKCYEAFDQ 239 (597)
T ss_dssp HHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCchhhHHHHH
Confidence 99999999999999953211 12335789999999999999999999999999753 3344555
Q ss_pred HHHHHHhCCCHHHHHHH---HHhCCCC----ChhHHHHHHHHHhcCCChHHHHHHhcccCC--CChhhHHHHHHHHHhcC
Q 007808 172 MINGYISCGDIVSARCL---FELAPER----DVILWNTIVSGYIDVRNMIEARKLFDQMPK--KDVISWNTMLSGYANNG 242 (589)
Q Consensus 172 l~~~~~~~g~~~~a~~~---~~~~~~~----~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~~~~~~l~~~~~~~~ 242 (589)
+...+...+..+.+... +..+... ...+|+.++..|.+.|++++|.++|+++.+ ++..+++.++.+|.+.|
T Consensus 240 l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g 319 (597)
T 2xpi_A 240 LVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADTLFVRS 319 (597)
T ss_dssp HHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTGGGCHHHHHHHHHHHHHTT
T ss_pred HHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhc
Confidence 55544433322221110 2222222 334566778889999999999999999987 88999999999999999
Q ss_pred CHHHHHHHHhhCCC---CCchhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHhcCChhHHHHHHH
Q 007808 243 DVEECKRLFEEMPE---RNVFSWNGLIGGYANNGLFFEVLDAFKRMLTEGRVFPNDATIVTVLSACARLGALDFSKWVHV 319 (589)
Q Consensus 243 ~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~ 319 (589)
++++|.++|+++.+ .+..+|+.++.++.+.|++++|.++++++.+.. +.+..++..++..|.+.|++++|..+|+
T Consensus 320 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 397 (597)
T 2xpi_A 320 RFIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKNKLYLISNDLVDRH--PEKAVTWLAVGIYYLCVNKISEARRYFS 397 (597)
T ss_dssp CHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTSHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC--cccHHHHHHHHHHHHHhccHHHHHHHHH
Confidence 99999999999874 477889999999999999999999999999764 5678899999999999999999999999
Q ss_pred HHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHhhCC---CCCcchHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCH
Q 007808 320 YAEYNGYQGNVCVGNALIDMYAKCGIIENAVDVFNSMD---TKDLITWNTIISGLAMHGRGAGALSLFHEMKNAGEMPDG 396 (589)
Q Consensus 320 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~ 396 (589)
++.+.. +.+..+++.++.+|.+.|++++|.++|+++. ..+..+|+.++.+|.+.|++++|+++|+++.+.. +.+.
T Consensus 398 ~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~ 475 (597)
T 2xpi_A 398 KSSTMD-PQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLANEYLQSSYALF-QYDP 475 (597)
T ss_dssp HHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-CCCH
T ss_pred HHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCh
Confidence 998865 5578899999999999999999999999875 3477899999999999999999999999999853 4478
Q ss_pred hHHHHHHHHHhccCcHHHHHHHHHHhHHhc---CCCCC--hHHHHHHHHHHHhcCCHHHHHHHHhhC-CCCC-CHHHHHH
Q 007808 397 ITFIGILCACTHMGLVEEGLSYFQSMAMDY---SIVPQ--IEHYGCMVDLLARAGRLAEAVDFVKRM-PIEA-DAVIWAN 469 (589)
Q Consensus 397 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ 469 (589)
.+|..++..|.+.|++++|.++|+++.... +..|+ ..+|..++.+|.+.|++++|++.++++ ...| +..+|..
T Consensus 476 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~ 555 (597)
T 2xpi_A 476 LLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTA 555 (597)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCCHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHH
Confidence 899999999999999999999999996542 55777 789999999999999999999999998 3334 7899999
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHccCCCCCcchHHHHHHHhh
Q 007808 470 LLGSCRVYKNVELAELALERLTELEPKNPANFVMLSNIYGD 510 (589)
Q Consensus 470 l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 510 (589)
+..+|.+.|++++|.+.|+++++++|+++.++..++.+|..
T Consensus 556 l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~ 596 (597)
T 2xpi_A 556 IALVYLHKKIPGLAITHLHESLAISPNEIMASDLLKRALEE 596 (597)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTC-
T ss_pred HHHHHHHhCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999988753
No 3
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=100.00 E-value=7.1e-30 Score=252.10 Aligned_cols=368 Identities=14% Similarity=0.067 Sum_probs=304.2
Q ss_pred HHHHHhCCCHHHHHHHHHhCC--CC-ChhHHHHHHHHHhcCCChHHHHHHhcccCC---CChhhHHHHHHHHHhcCCHHH
Q 007808 173 INGYISCGDIVSARCLFELAP--ER-DVILWNTIVSGYIDVRNMIEARKLFDQMPK---KDVISWNTMLSGYANNGDVEE 246 (589)
Q Consensus 173 ~~~~~~~g~~~~a~~~~~~~~--~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~ 246 (589)
...+.+.|++++|.+.++.+. .| +...+..+...+...|++++|...++...+ .+..+|..+...+.+.|++++
T Consensus 6 a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~~ 85 (388)
T 1w3b_A 6 AHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQE 85 (388)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHH
Confidence 344556666666666665543 22 445666667777777888888777776654 456778888888888888888
Q ss_pred HHHHHhhCCC--C-CchhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 007808 247 CKRLFEEMPE--R-NVFSWNGLIGGYANNGLFFEVLDAFKRMLTEGRVFPNDATIVTVLSACARLGALDFSKWVHVYAEY 323 (589)
Q Consensus 247 A~~~~~~~~~--~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 323 (589)
|...|+++.+ | +..+|..+..++...|++++|++.|.++.+.. +.+...+..+...+...|++++|...+.++.+
T Consensus 86 A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 163 (388)
T 1w3b_A 86 AIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYN--PDLYCVRSDLGNLLKALGRLEEAKACYLKAIE 163 (388)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC--TTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 8888888764 4 45578888889999999999999999988865 23345566777788888999999999998888
Q ss_pred cCCCCChhHHHHHHHHHHhcCChHHHHHHHhhCC---CCCcchHHHHHHHHHhCCChHHHHHHHHHHHHCCCCC-CHhHH
Q 007808 324 NGYQGNVCVGNALIDMYAKCGIIENAVDVFNSMD---TKDLITWNTIISGLAMHGRGAGALSLFHEMKNAGEMP-DGITF 399 (589)
Q Consensus 324 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p-~~~~~ 399 (589)
.. +.+..++..+...+...|++++|...|+++. +.+...|..+...+...|++++|+..+++.... .| +..++
T Consensus 164 ~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~ 240 (388)
T 1w3b_A 164 TQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSL--SPNHAVVH 240 (388)
T ss_dssp HC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHH--CTTCHHHH
T ss_pred hC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CcCCHHHH
Confidence 74 5567788889999999999999999998876 235567888999999999999999999999884 45 57788
Q ss_pred HHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHhhC-C-CCCCHHHHHHHHHHHhcC
Q 007808 400 IGILCACTHMGLVEEGLSYFQSMAMDYSIVPQIEHYGCMVDLLARAGRLAEAVDFVKRM-P-IEADAVIWANLLGSCRVY 477 (589)
Q Consensus 400 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~-~~p~~~~~~~l~~~~~~~ 477 (589)
..+...+...|++++|.+.|+++... .+.+...|..++.+|.+.|++++|++.++++ . .+++..++..+...+...
T Consensus 241 ~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 318 (388)
T 1w3b_A 241 GNLACVYYEQGLIDLAIDTYRRAIEL--QPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQ 318 (388)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHT--CSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHc
Confidence 89999999999999999999999753 2334778999999999999999999999988 2 345788899999999999
Q ss_pred CCHHHHHHHHHHHHccCCCCCcchHHHHHHHhhcCChHHHHHHHHHhhhCCCccCCccceeeeCCeeeeeccccCCCchH
Q 007808 478 KNVELAELALERLTELEPKNPANFVMLSNIYGDLGRWKDVARIKVAMRDTGFKKLPGCSSIEVNEVVMLGCLSRELDRKS 557 (589)
Q Consensus 478 g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 557 (589)
|++++|...+++++++.|+++.++..++.+|.+.|++++|++.++++. +++|+++.
T Consensus 319 g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~------------------------~~~p~~~~ 374 (388)
T 1w3b_A 319 GNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAI------------------------RISPTFAD 374 (388)
T ss_dssp TCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHH------------------------TTCTTCHH
T ss_pred CCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH------------------------hhCCCCHH
Confidence 999999999999999999999999999999999999999999999996 78899999
Q ss_pred HHHHHHHHHHHccc
Q 007808 558 IVRAEANMIKLLPQ 571 (589)
Q Consensus 558 ~~~~l~~~~~~~~~ 571 (589)
++..+|+++.++|+
T Consensus 375 a~~~lg~~~~~~~~ 388 (388)
T 1w3b_A 375 AYSNMGNTLKEMQD 388 (388)
T ss_dssp HHHHHHHHHHHTCC
T ss_pred HHHhHHHHHHHccC
Confidence 99999999998874
No 4
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.97 E-value=4.2e-28 Score=239.33 Aligned_cols=278 Identities=10% Similarity=0.069 Sum_probs=223.1
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHhhCCC--C-CchhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCcHHHHHHHHHHH
Q 007808 229 ISWNTMLSGYANNGDVEECKRLFEEMPE--R-NVFSWNGLIGGYANNGLFFEVLDAFKRMLTEGRVFPNDATIVTVLSAC 305 (589)
Q Consensus 229 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~ 305 (589)
.+|..+...+.+.|++++|.+.|+++.+ | +...+..+...+...|++++|.+.|+++.+.. +.+..++..+...+
T Consensus 102 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~ 179 (388)
T 1w3b_A 102 DGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQ--PNFAVAWSNLGCVF 179 (388)
T ss_dssp HHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHH
Confidence 3455555666666666666666655543 3 34456667777777788888888888877754 33466777777778
Q ss_pred HhcCChhHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHhhCC---CCCcchHHHHHHHHHhCCChHHHHH
Q 007808 306 ARLGALDFSKWVHVYAEYNGYQGNVCVGNALIDMYAKCGIIENAVDVFNSMD---TKDLITWNTIISGLAMHGRGAGALS 382 (589)
Q Consensus 306 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~ 382 (589)
...|++++|...++++.+.+ +.+...+..+...+...|++++|...|++.. +.+..++..+..+|...|++++|++
T Consensus 180 ~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 258 (388)
T 1w3b_A 180 NAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAID 258 (388)
T ss_dssp HTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 88888888888888877765 4466777888888888888888888887664 3356788889999999999999999
Q ss_pred HHHHHHHCCCCC-CHhHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHhhC-CC
Q 007808 383 LFHEMKNAGEMP-DGITFIGILCACTHMGLVEEGLSYFQSMAMDYSIVPQIEHYGCMVDLLARAGRLAEAVDFVKRM-PI 460 (589)
Q Consensus 383 ~~~~m~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~ 460 (589)
.|+++.+. .| +..++..+...+.+.|++++|.+.++++.+. .+.+..++..++..+.+.|++++|++.++++ ..
T Consensus 259 ~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 334 (388)
T 1w3b_A 259 TYRRAIEL--QPHFPDAYCNLANALKEKGSVAEAEDCYNTALRL--CPTHADSLNNLANIKREQGNIEEAVRLYRKALEV 334 (388)
T ss_dssp HHHHHHHT--CSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTS
T ss_pred HHHHHHhh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 99999985 44 5678899999999999999999999999764 3567889999999999999999999999998 44
Q ss_pred CC-CHHHHHHHHHHHhcCCCHHHHHHHHHHHHccCCCCCcchHHHHHHHhhcCC
Q 007808 461 EA-DAVIWANLLGSCRVYKNVELAELALERLTELEPKNPANFVMLSNIYGDLGR 513 (589)
Q Consensus 461 ~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 513 (589)
.| +...+..+..++.+.|++++|...|+++++++|+++.++..++.++...|+
T Consensus 335 ~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~a~~~lg~~~~~~~~ 388 (388)
T 1w3b_A 335 FPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp CTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTCC
T ss_pred CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHhHHHHHHHccC
Confidence 45 577889999999999999999999999999999999999999999988764
No 5
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.95 E-value=1.1e-26 Score=232.75 Aligned_cols=183 Identities=13% Similarity=0.093 Sum_probs=160.8
Q ss_pred hhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHhcCC---------hhHHHHHHHHHHHcCCCCCh
Q 007808 260 FSWNGLIGGYANNGLFFEVLDAFKRMLTEGRVFPNDATIVTVLSACARLGA---------LDFSKWVHVYAEYNGYQGNV 330 (589)
Q Consensus 260 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~---------~~~a~~~~~~~~~~~~~~~~ 330 (589)
..++.+|.+|++.|++++|+++|++|.+.| +.||..||+.+|.+|++.+. ++.|.++|++|...|+.||.
T Consensus 27 ~~l~~~id~c~k~G~~~~A~~lf~~M~~~G-v~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~ 105 (501)
T 4g26_A 27 ALLKQKLDMCSKKGDVLEALRLYDEARRNG-VQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNE 105 (501)
T ss_dssp HHHHHHHHHTTTSCCHHHHHHHHHHHHHHT-CCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHcC-CCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCH
Confidence 357778889999999999999999999988 89999999999998887654 57788899999999999999
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHhhCC----CCCcchHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHH
Q 007808 331 CVGNALIDMYAKCGIIENAVDVFNSMD----TKDLITWNTIISGLAMHGRGAGALSLFHEMKNAGEMPDGITFIGILCAC 406 (589)
Q Consensus 331 ~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~ 406 (589)
.+|+++|.+|++.|++++|.++|++|. .||..+|+++|.+|++.|+.++|.++|++|.+.|+.||..||+.|+.+|
T Consensus 106 ~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~ 185 (501)
T 4g26_A 106 ATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVS 185 (501)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Confidence 999999999999999999999998886 5788899999999999999999999999999999999999999999999
Q ss_pred hccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHh
Q 007808 407 THMGLVEEGLSYFQSMAMDYSIVPQIEHYGCMVDLLAR 444 (589)
Q Consensus 407 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 444 (589)
++.|++++|.+++++|. +.+..|+..||+.++..|..
T Consensus 186 ~~~g~~d~A~~ll~~Mr-~~g~~ps~~T~~~l~~~F~s 222 (501)
T 4g26_A 186 MDTKNADKVYKTLQRLR-DLVRQVSKSTFDMIEEWFKS 222 (501)
T ss_dssp HHTTCHHHHHHHHHHHH-HHTSSBCHHHHHHHHHHHHS
T ss_pred hhCCCHHHHHHHHHHHH-HhCCCcCHHHHHHHHHHHhc
Confidence 99999999999999995 45889999999988888765
No 6
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.94 E-value=6.3e-25 Score=225.27 Aligned_cols=449 Identities=9% Similarity=-0.076 Sum_probs=313.7
Q ss_pred cHHHHHHHHHcCCChhHHHHHHHHhhhCCCCCCcccHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchHHHhHHHHHHH
Q 007808 67 SWNAMFNGYAQNEFHRTVVVLFTQMKKLDAMPNCFTFPIVLKSCVKINALREGEELHCLVLKNGFRANIFVGTALIELYS 146 (589)
Q Consensus 67 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 146 (589)
.|......+.+.|++++|++.|+++.+.+ |+..+|..+..++...|++++|.+.++.+++.+ +.+...+..+..+|.
T Consensus 8 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~ 84 (514)
T 2gw1_A 8 ALKDKGNQFFRNKKYDDAIKYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALELK-PDYSKVLLRRASANE 84 (514)
T ss_dssp HHHHHHHHHHHTSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhcC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-hHHHHHHHHHHHHHH
Confidence 35556677777888888888888887764 677777777888888888888888888887765 345567777777788
Q ss_pred cCCChHHHHHHHccCCCC---CeehHHHHHHHHHhCCCHHHHHHHHHhCCCC----ChhHHHHHHHHHhcCCChHHHHHH
Q 007808 147 TGKAIEAAYKVFGEMDER---NVVVWTSMINGYISCGDIVSARCLFELAPER----DVILWNTIVSGYIDVRNMIEARKL 219 (589)
Q Consensus 147 ~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~~~~~l~~~~~~~g~~~~a~~~ 219 (589)
+.|++++|...|+++... +......++..+........+.+.+..+... +...+.. ..+ .
T Consensus 85 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~------~~~-------~ 151 (514)
T 2gw1_A 85 GLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQP------AKE-------R 151 (514)
T ss_dssp HTTCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC-----------------------------------
T ss_pred HHhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCh------hhH-------H
Confidence 888888888777766431 2222222222222221111111111111000 0000000 000 0
Q ss_pred hcccCC-CChhhHHHHHHHHHhcCCHHHHHHHHhhCCCC-CchhHHHHHHHHHh---CCChHHHHHHHHHHHH-----cC
Q 007808 220 FDQMPK-KDVISWNTMLSGYANNGDVEECKRLFEEMPER-NVFSWNGLIGGYAN---NGLFFEVLDAFKRMLT-----EG 289 (589)
Q Consensus 220 ~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~l~~~~~~---~g~~~~A~~~~~~~~~-----~~ 289 (589)
...... |+..... .+.......... ..+..| +...+..+...+.. .|++++|+..|+++.+ ..
T Consensus 152 ~~~~~~~~~~~~~~----~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 224 (514)
T 2gw1_A 152 KDKQENLPSVTSMA----SFFGIFKPELTF---ANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLD 224 (514)
T ss_dssp -----CCCCHHHHH----HHHTTSCCCCCC---SSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTT
T ss_pred HhhccCCchhHHHH----HHHhhcCHHHHH---HHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhc
Confidence 000000 1111111 111100000000 011112 23444455555554 8999999999999988 31
Q ss_pred CC-------CCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHhhCCC---C
Q 007808 290 RV-------FPNDATIVTVLSACARLGALDFSKWVHVYAEYNGYQGNVCVGNALIDMYAKCGIIENAVDVFNSMDT---K 359 (589)
Q Consensus 290 ~~-------~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~ 359 (589)
.. +.+...+..+...+...|+++.|...+..+.+.... ...+..+...+...|++++|...++++.+ .
T Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~ 302 (514)
T 2gw1_A 225 KNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELFPR--VNSYIYMALIMADRNDSTEYYNYFDKALKLDSN 302 (514)
T ss_dssp TSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTT
T ss_pred cCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcc--HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcC
Confidence 00 123456778888899999999999999999987633 88888999999999999999999998763 3
Q ss_pred CcchHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHH
Q 007808 360 DLITWNTIISGLAMHGRGAGALSLFHEMKNAGEMPDGITFIGILCACTHMGLVEEGLSYFQSMAMDYSIVPQIEHYGCMV 439 (589)
Q Consensus 360 ~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~ 439 (589)
+...+..+...+...|++++|+..++++.+.. +.+...+..+...+...|++++|...++++... .+.+...+..++
T Consensus 303 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la 379 (514)
T 2gw1_A 303 NSSVYYHRGQMNFILQNYDQAGKDFDKAKELD-PENIFPYIQLACLAYRENKFDDCETLFSEAKRK--FPEAPEVPNFFA 379 (514)
T ss_dssp CTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTC-SSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHH--STTCSHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--cccCHHHHHHHH
Confidence 66789999999999999999999999999853 335678888999999999999999999999764 234567888999
Q ss_pred HHHHhcCCHHHHHHHHhhC-C---CCCC----HHHHHHHHHHHhc---CCCHHHHHHHHHHHHccCCCCCcchHHHHHHH
Q 007808 440 DLLARAGRLAEAVDFVKRM-P---IEAD----AVIWANLLGSCRV---YKNVELAELALERLTELEPKNPANFVMLSNIY 508 (589)
Q Consensus 440 ~~~~~~g~~~~A~~~~~~~-~---~~p~----~~~~~~l~~~~~~---~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 508 (589)
..|.+.|++++|.+.++++ . ..++ ...+..+...+.. .|++++|...++++++..|+++.++..++.+|
T Consensus 380 ~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~ 459 (514)
T 2gw1_A 380 EILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMK 459 (514)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 9999999999999999987 2 2222 3478888899999 99999999999999999999999999999999
Q ss_pred hhcCChHHHHHHHHHhhhCCCccCCccceeeeCCeeeeeccccCCCchHHHHHHHHHHH
Q 007808 509 GDLGRWKDVARIKVAMRDTGFKKLPGCSSIEVNEVVMLGCLSRELDRKSIVRAEANMIK 567 (589)
Q Consensus 509 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~~~ 567 (589)
.+.|++++|...++++. +++|+++.++..+.....
T Consensus 460 ~~~g~~~~A~~~~~~a~------------------------~~~~~~~~~~~~~~~~~~ 494 (514)
T 2gw1_A 460 LQQEDIDEAITLFEESA------------------------DLARTMEEKLQAITFAEA 494 (514)
T ss_dssp HHTTCHHHHHHHHHHHH------------------------HHCSSHHHHHHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHH------------------------HhccccHHHHHHHHHHHH
Confidence 99999999999999986 788999999988776654
No 7
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.94 E-value=1.8e-24 Score=223.19 Aligned_cols=425 Identities=11% Similarity=-0.005 Sum_probs=265.2
Q ss_pred cccHHHHHHHHHcCCChhHHHHHHHHhhhCCCCCCcccHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchHHHhHHHHH
Q 007808 65 VVSWNAMFNGYAQNEFHRTVVVLFTQMKKLDAMPNCFTFPIVLKSCVKINALREGEELHCLVLKNGFRANIFVGTALIEL 144 (589)
Q Consensus 65 ~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 144 (589)
...|..+...+.+.|++++|++.|+++.+.. +.+...+..+..++...|++++|.+.++++++.+ +.+...+..+..+
T Consensus 25 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~ 102 (537)
T 3fp2_A 25 AVQLKNRGNHFFTAKNFNEAIKYYQYAIELD-PNEPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRASA 102 (537)
T ss_dssp HHHHHHHHHHHHHTTCCC-CHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHHHH
Confidence 4567778888889999999999999988765 4466788888888889999999999999998876 4467788888888
Q ss_pred HHcCCChHHHHHHHccCCCCCeehHHHHHHHHHhCCCHHHHHHHHHhCCCCChhHHHHHHHHHhcCCChHHHHHHhcccC
Q 007808 145 YSTGKAIEAAYKVFGEMDERNVVVWTSMINGYISCGDIVSARCLFELAPERDVILWNTIVSGYIDVRNMIEARKLFDQMP 224 (589)
Q Consensus 145 ~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 224 (589)
+...|++++|+..|+.+ ..++......+..+...+...+|...++.+...++...
T Consensus 103 ~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~------------------------ 157 (537)
T 3fp2_A 103 NESLGNFTDAMFDLSVL-SLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRG------------------------ 157 (537)
T ss_dssp HHHHTCHHHHHHHHHHH-C-----------CHHHHHHHHHHHHHHHHHCC------------------------------
T ss_pred HHHcCCHHHHHHHHHHH-hcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCcccc------------------------
Confidence 88888888888888643 22222222334444455555566666655543211000
Q ss_pred CCChhhHHHHHHHHHhcCCHHHHHHHHhhCCCCCch---hHHHHHHHHHh--------CCChHHHHHHHHHHHHcCCCCC
Q 007808 225 KKDVISWNTMLSGYANNGDVEECKRLFEEMPERNVF---SWNGLIGGYAN--------NGLFFEVLDAFKRMLTEGRVFP 293 (589)
Q Consensus 225 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~---~~~~l~~~~~~--------~g~~~~A~~~~~~~~~~~~~~p 293 (589)
+........+..+....+.+.+...+......+.. ....+...+.. .|++++|+..|+++.+.. |
T Consensus 158 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~---p 233 (537)
T 3fp2_A 158 -SQVLPSNTSLASFFGIFDSHLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSAN---T 233 (537)
T ss_dssp --CCCCCHHHHHHHHHTSCHHHHHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC-----C
T ss_pred -ccccchHhHHHHHHHhcChHHHHHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHC---C
Confidence 00011112222233334444444444433332221 12222222111 135566666666666543 2
Q ss_pred c--------HHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHhhCC---CCCcc
Q 007808 294 N--------DATIVTVLSACARLGALDFSKWVHVYAEYNGYQGNVCVGNALIDMYAKCGIIENAVDVFNSMD---TKDLI 362 (589)
Q Consensus 294 ~--------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~ 362 (589)
+ ..++..+...+...|+++.|...+..+.+.. |+...+..+...+...|++++|...|+++. ..+..
T Consensus 234 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 311 (537)
T 3fp2_A 234 VDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINLH--PTPNSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPP 311 (537)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTTCHH
T ss_pred CcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCHH
Confidence 2 1234444555566666666666666666653 235566666666666677777776666554 23456
Q ss_pred hHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHH
Q 007808 363 TWNTIISGLAMHGRGAGALSLFHEMKNAGEMPDGITFIGILCACTHMGLVEEGLSYFQSMAMDYSIVPQIEHYGCMVDLL 442 (589)
Q Consensus 363 ~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~ 442 (589)
+|..+...+...|++++|+..++++.+.. +.+...+..+...+...|++++|...++++... .+.+...+..+...|
T Consensus 312 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~ 388 (537)
T 3fp2_A 312 TYYHRGQMYFILQDYKNAKEDFQKAQSLN-PENVYPYIQLACLLYKQGKFTESEAFFNETKLK--FPTLPEVPTFFAEIL 388 (537)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCTHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHH
Confidence 67777777777777788888777777642 224566777777777888888888888777653 233456677777888
Q ss_pred HhcCCHHHHHHHHhhCC----CCC----CHHHHHHHHHHHhcC----------CCHHHHHHHHHHHHccCCCCCcchHHH
Q 007808 443 ARAGRLAEAVDFVKRMP----IEA----DAVIWANLLGSCRVY----------KNVELAELALERLTELEPKNPANFVML 504 (589)
Q Consensus 443 ~~~g~~~~A~~~~~~~~----~~p----~~~~~~~l~~~~~~~----------g~~~~A~~~~~~~~~~~p~~~~~~~~l 504 (589)
...|++++|++.++++. ..+ ....+......+... |++++|...++++++.+|+++.++..+
T Consensus 389 ~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l 468 (537)
T 3fp2_A 389 TDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGL 468 (537)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 88888888888777751 111 122233444556666 888888888888888888888888888
Q ss_pred HHHHhhcCChHHHHHHHHHhh
Q 007808 505 SNIYGDLGRWKDVARIKVAMR 525 (589)
Q Consensus 505 ~~~~~~~g~~~~A~~~~~~~~ 525 (589)
+.+|.+.|++++|++.++++.
T Consensus 469 ~~~~~~~g~~~~A~~~~~~al 489 (537)
T 3fp2_A 469 AQLKLQMEKIDEAIELFEDSA 489 (537)
T ss_dssp HHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHH
Confidence 888888888888888888875
No 8
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.94 E-value=1.1e-25 Score=225.61 Aligned_cols=198 Identities=13% Similarity=0.119 Sum_probs=170.4
Q ss_pred HHHHHHHHHHHcCCCCCc-HHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCC---------h
Q 007808 277 EVLDAFKRMLTEGRVFPN-DATIVTVLSACARLGALDFSKWVHVYAEYNGYQGNVCVGNALIDMYAKCGI---------I 346 (589)
Q Consensus 277 ~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---------~ 346 (589)
.+..+.+++.+.+ ..+. ...++.+|.+|++.|++++|.++|++|.+.|++||..+|+.||.+|++.+. +
T Consensus 8 ~~e~L~~~~~~k~-~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l 86 (501)
T 4g26_A 8 PSENLSRKAKKKA-IQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGL 86 (501)
T ss_dssp -----------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHH
T ss_pred hHHHHHHHHHHhc-ccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchH
Confidence 3445556676666 5444 346888999999999999999999999999999999999999999987665 6
Q ss_pred HHHHHHHhhCC----CCCcchHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCcHHHHHHHHHHh
Q 007808 347 ENAVDVFNSMD----TKDLITWNTIISGLAMHGRGAGALSLFHEMKNAGEMPDGITFIGILCACTHMGLVEEGLSYFQSM 422 (589)
Q Consensus 347 ~~A~~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 422 (589)
++|.++|++|. .||..+|++||.+|++.|++++|.++|++|.+.|+.||..||+.+|.+|++.|++++|.++|++|
T Consensus 87 ~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M 166 (501)
T 4g26_A 87 SRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHM 166 (501)
T ss_dssp HHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHH
Confidence 88999999986 57999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHhhC---CCCCCHHHHHHHHHHHhc
Q 007808 423 AMDYSIVPQIEHYGCMVDLLARAGRLAEAVDFVKRM---PIEADAVIWANLLGSCRV 476 (589)
Q Consensus 423 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~---~~~p~~~~~~~l~~~~~~ 476 (589)
.+ .|+.||..+|+.|+.+|++.|+.++|.+++++| +..|+..||+.++..|..
T Consensus 167 ~~-~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s 222 (501)
T 4g26_A 167 VE-SEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKS 222 (501)
T ss_dssp HH-TTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHS
T ss_pred Hh-cCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhc
Confidence 65 599999999999999999999999999999999 589999999999988764
No 9
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.94 E-value=2.6e-24 Score=216.79 Aligned_cols=350 Identities=12% Similarity=0.063 Sum_probs=269.0
Q ss_pred ChhHHHHHHHHHhcCCChHHHHHHhcccCC---CChhhHHHHHHHHHhcCCHHHHHHHHhhCCC---CCchhHHHHHHHH
Q 007808 196 DVILWNTIVSGYIDVRNMIEARKLFDQMPK---KDVISWNTMLSGYANNGDVEECKRLFEEMPE---RNVFSWNGLIGGY 269 (589)
Q Consensus 196 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~ 269 (589)
+...+..++..+.+.|++++|..+|+++.+ .+..++..+...+...|++++|...|+++.+ .+..++..+..+|
T Consensus 25 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 104 (450)
T 2y4t_A 25 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGHLL 104 (450)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHH
Confidence 445566666677777777777777766653 3566777777777888888888888877664 3456778888888
Q ss_pred HhCCChHHHHHHHHHHHHcCCCCCcH----HHHHHH------------HHHHHhcCChhHHHHHHHHHHHcCCCCChhHH
Q 007808 270 ANNGLFFEVLDAFKRMLTEGRVFPND----ATIVTV------------LSACARLGALDFSKWVHVYAEYNGYQGNVCVG 333 (589)
Q Consensus 270 ~~~g~~~~A~~~~~~~~~~~~~~p~~----~~~~~l------------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 333 (589)
...|++++|++.|+++.+.. |+. ..+..+ ...+...|+++.|...+..+.+.. +.+..++
T Consensus 105 ~~~g~~~~A~~~~~~~~~~~---~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~ 180 (450)
T 2y4t_A 105 LKQGKLDEAEDDFKKVLKSN---PSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVC-VWDAELR 180 (450)
T ss_dssp HHTTCHHHHHHHHHHHHTSC---CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHH
T ss_pred HHcCCHHHHHHHHHHHHhcC---CCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHH
Confidence 88888888888888888754 433 344433 444788899999999999988765 5577888
Q ss_pred HHHHHHHHhcCChHHHHHHHhhCC---CCCcchHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCC-HhHHHHH-------
Q 007808 334 NALIDMYAKCGIIENAVDVFNSMD---TKDLITWNTIISGLAMHGRGAGALSLFHEMKNAGEMPD-GITFIGI------- 402 (589)
Q Consensus 334 ~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~-~~~~~~l------- 402 (589)
..++.+|.+.|++++|.+.|+++. +.+..+|..++.+|...|++++|+..|+++... .|+ ...+..+
T Consensus 181 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~~~~~~~~~~ 258 (450)
T 2y4t_A 181 ELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLKL--DQDHKRCFAHYKQVKKLN 258 (450)
T ss_dssp HHHHHHHHHTTCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCChHHHHHHHHHHHHHH
Confidence 889999999999999999998876 346788999999999999999999999999874 454 3344443
Q ss_pred -----HHHHhccCcHHHHHHHHHHhHHhcCCCCC-----hHHHHHHHHHHHhcCCHHHHHHHHhhC-CCCC-CHHHHHHH
Q 007808 403 -----LCACTHMGLVEEGLSYFQSMAMDYSIVPQ-----IEHYGCMVDLLARAGRLAEAVDFVKRM-PIEA-DAVIWANL 470 (589)
Q Consensus 403 -----~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l 470 (589)
+..|...|++++|..+|+++... .|+ ...+..++.++.+.|++++|+..++++ ...| +...|..+
T Consensus 259 ~~~~~~~~~~~~g~~~~A~~~~~~~l~~---~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l 335 (450)
T 2y4t_A 259 KLIESAEELIRDGRYTDATSKYESVMKT---EPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPDNVNALKDR 335 (450)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHH---CCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhc---CCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHH
Confidence 78899999999999999999764 344 457888999999999999999999987 3344 68889999
Q ss_pred HHHHhcCCCHHHHHHHHHHHHccCCCCCcchHHHHHH------------HhhcC-----ChHHHHHHHHHhhhCCCccCC
Q 007808 471 LGSCRVYKNVELAELALERLTELEPKNPANFVMLSNI------------YGDLG-----RWKDVARIKVAMRDTGFKKLP 533 (589)
Q Consensus 471 ~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~------------~~~~g-----~~~~A~~~~~~~~~~~~~~~~ 533 (589)
..+|...|++++|...++++++++|+++.++..++.+ |...| +.+++.+.++++.
T Consensus 336 ~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~y~~lg~~~~~~~~~~~~~y~~~~-------- 407 (450)
T 2y4t_A 336 AEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAKKQEIIKAYRKLA-------- 407 (450)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHHSCCSGGGSCSSTTCCTTHHHHHHHHHH--------
T ss_pred HHHHHHhcCHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHhhcccchhHHHHhCCCccCCHHHHHHHHHHHH--------
Confidence 9999999999999999999999999999999999844 44445 4556666666532
Q ss_pred ccceeeeCCeeeeeccccCCCc----------hHHHHHHHHHHHHcccCCCCcc
Q 007808 534 GCSSIEVNEVVMLGCLSRELDR----------KSIVRAEANMIKLLPQNNHPLT 577 (589)
Q Consensus 534 ~~~~~~~~~~~~~~~~~~~p~~----------~~~~~~l~~~~~~~~~~~~~~~ 577 (589)
++.+|++ ......++.+|..+|+......
T Consensus 408 ---------------l~~~pd~~~~~~~~~~a~~~~~~i~~ay~~L~d~~~r~~ 446 (450)
T 2y4t_A 408 ---------------LQWHPDNFQNEEEKKKAEKKFIDIAAAKEVLSDPEMRKK 446 (450)
T ss_dssp ---------------HHSCGGGCCSHHHHHHHHHHHHHHHHHHHHSSGGGGC--
T ss_pred ---------------HHhCCCCCCCchHHHHHHHHHHHHHHHHHHhCCHHHHHh
Confidence 2333332 2366778899999988765543
No 10
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.94 E-value=3.7e-24 Score=220.88 Aligned_cols=435 Identities=11% Similarity=-0.013 Sum_probs=314.4
Q ss_pred ccchHHHHHHHHccCChhHHHHHhhcCCC---CCcccHHHHHHHHHcCCChhHHHHHHHHhhhCCCCCCcccHHHHHHHH
Q 007808 34 DYITPRIITACAQLKQMTYARKMFDKITD---QNVVSWNAMFNGYAQNEFHRTVVVLFTQMKKLDAMPNCFTFPIVLKSC 110 (589)
Q Consensus 34 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~ 110 (589)
...+..+...+.+.|++++|...|+++.+ .+..+|..+..++.+.|++++|++.|+++.+.+ +.+..++..+..++
T Consensus 25 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~ 103 (537)
T 3fp2_A 25 AVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRASAN 103 (537)
T ss_dssp HHHHHHHHHHHHHTTCCC-CHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHHHHH
Confidence 35677889999999999999999999765 466789999999999999999999999998875 44667888899999
Q ss_pred hccCChHHHHHHHHHHHHhCCCCchHHHhHHHHHHHcCCChHHHHHHHccCCCCC------eehHHHHHHHHHhCCCHHH
Q 007808 111 VKINALREGEELHCLVLKNGFRANIFVGTALIELYSTGKAIEAAYKVFGEMDERN------VVVWTSMINGYISCGDIVS 184 (589)
Q Consensus 111 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~------~~~~~~l~~~~~~~g~~~~ 184 (589)
...|++++|...|+ .....+.+. ...+..+...+....|...++.+...+ .......+..+....+.+.
T Consensus 104 ~~~g~~~~A~~~~~-~~~~~~~~~----~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (537)
T 3fp2_A 104 ESLGNFTDAMFDLS-VLSLNGDFD----GASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHL 178 (537)
T ss_dssp HHHTCHHHHHHHHH-HHC---------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHH
T ss_pred HHcCCHHHHHHHHH-HHhcCCCCC----hHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHH
Confidence 99999999999996 433322222 222334445566688898888886521 1223344444555555555
Q ss_pred HHHHHHhCCCCChh---HHHHHHHHHhcCCChHHHHHHhcccCCCChhhHHHHHHHHHhcCCHHHHHHHHhhCCC--CC-
Q 007808 185 ARCLFELAPERDVI---LWNTIVSGYIDVRNMIEARKLFDQMPKKDVISWNTMLSGYANNGDVEECKRLFEEMPE--RN- 258 (589)
Q Consensus 185 a~~~~~~~~~~~~~---~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~- 258 (589)
+...+......+.. ....+...+...+ -......|++++|..+|+.+.+ |+
T Consensus 179 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-----------------------~~~~~a~~~~~~A~~~~~~~l~~~p~~ 235 (537)
T 3fp2_A 179 EVSSVNTSSNYDTAYALLSDALQRLYSATD-----------------------EGYLVANDLLTKSTDMYHSLLSANTVD 235 (537)
T ss_dssp HHHTSCCCCSSCSSHHHHHHHHHHHHTCSH-----------------------HHHHHHHHHHHHHHHHHHHHHC--CCC
T ss_pred HHHHHhhccccccHHHHHHHHHHHHHHhhh-----------------------hhhHHHHHHHHHHHHHHHHHHHHCCCc
Confidence 55555444433222 2222221111110 0001112456677777776655 22
Q ss_pred -------chhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChh
Q 007808 259 -------VFSWNGLIGGYANNGLFFEVLDAFKRMLTEGRVFPNDATIVTVLSACARLGALDFSKWVHVYAEYNGYQGNVC 331 (589)
Q Consensus 259 -------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 331 (589)
..++..+...+...|++++|+..|+++.+.. |+...+..+...+...|+++.|...+..+.+.. +.+..
T Consensus 236 ~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~ 311 (537)
T 3fp2_A 236 DPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINLH---PTPNSYIFLALTLADKENSQEFFKFFQKAVDLN-PEYPP 311 (537)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---CCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC-TTCHH
T ss_pred chhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcC---CCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC-CCCHH
Confidence 1245666778888899999999999998865 667788888888899999999999999988875 55678
Q ss_pred HHHHHHHHHHhcCChHHHHHHHhhCC---CCCcchHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhc
Q 007808 332 VGNALIDMYAKCGIIENAVDVFNSMD---TKDLITWNTIISGLAMHGRGAGALSLFHEMKNAGEMPDGITFIGILCACTH 408 (589)
Q Consensus 332 ~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~ 408 (589)
++..+...+...|++++|...|+++. ..+...|..+...+...|++++|+..++++.+.. +.+...+..+...+..
T Consensus 312 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~ 390 (537)
T 3fp2_A 312 TYYHRGQMYFILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLKF-PTLPEVPTFFAEILTD 390 (537)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHH
Confidence 88889999999999999999998775 3356788999999999999999999999998853 3356688889999999
Q ss_pred cCcHHHHHHHHHHhHHhcCCCC----ChHHHHHHHHHHHhc----------CCHHHHHHHHhhC-CCCC-CHHHHHHHHH
Q 007808 409 MGLVEEGLSYFQSMAMDYSIVP----QIEHYGCMVDLLARA----------GRLAEAVDFVKRM-PIEA-DAVIWANLLG 472 (589)
Q Consensus 409 ~g~~~~A~~~~~~~~~~~~~~~----~~~~~~~l~~~~~~~----------g~~~~A~~~~~~~-~~~p-~~~~~~~l~~ 472 (589)
.|++++|...++++.......+ ....+..+..+|.+. |++++|+..++++ ...| +...+..+..
T Consensus 391 ~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~ 470 (537)
T 3fp2_A 391 RGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQ 470 (537)
T ss_dssp TTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 9999999999999865422112 123345556778888 9999999999988 3344 6778888999
Q ss_pred HHhcCCCHHHHHHHHHHHHccCCCCCcchH
Q 007808 473 SCRVYKNVELAELALERLTELEPKNPANFV 502 (589)
Q Consensus 473 ~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ 502 (589)
++...|++++|.+.|++++++.|+++....
T Consensus 471 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 500 (537)
T 3fp2_A 471 LKLQMEKIDEAIELFEDSAILARTMDEKLQ 500 (537)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC--CHHHHH
T ss_pred HHHHhccHHHHHHHHHHHHHhCCCcHHHHH
Confidence 999999999999999999999998665433
No 11
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.93 E-value=6e-24 Score=214.10 Aligned_cols=311 Identities=12% Similarity=0.033 Sum_probs=268.3
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHhhCCC---CCchhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCcHHHHHHHHH
Q 007808 227 DVISWNTMLSGYANNGDVEECKRLFEEMPE---RNVFSWNGLIGGYANNGLFFEVLDAFKRMLTEGRVFPNDATIVTVLS 303 (589)
Q Consensus 227 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~ 303 (589)
+...+..+...+.+.|++++|...|+.+.+ .+..+|..+..+|...|++++|+..|+++.+.+ +.+...+..+..
T Consensus 25 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~ 102 (450)
T 2y4t_A 25 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK--MDFTAARLQRGH 102 (450)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CCcHHHHHHHHH
Confidence 456788899999999999999999998875 467889999999999999999999999999976 445778899999
Q ss_pred HHHhcCChhHHHHHHHHHHHcCCCCCh---hHHHHH------------HHHHHhcCChHHHHHHHhhCC---CCCcchHH
Q 007808 304 ACARLGALDFSKWVHVYAEYNGYQGNV---CVGNAL------------IDMYAKCGIIENAVDVFNSMD---TKDLITWN 365 (589)
Q Consensus 304 ~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l------------~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~ 365 (589)
++.+.|++++|...++.+.+.. +.+. ..+..+ ...+...|++++|...|+++. ..+...+.
T Consensus 103 ~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 181 (450)
T 2y4t_A 103 LLLKQGKLDEAEDDFKKVLKSN-PSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVWDAELRE 181 (450)
T ss_dssp HHHHTTCHHHHHHHHHHHHTSC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHhcC-CCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHH
Confidence 9999999999999999998864 3334 555545 445889999999999999876 34678899
Q ss_pred HHHHHHHhCCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC-hHHHHHH------
Q 007808 366 TIISGLAMHGRGAGALSLFHEMKNAGEMPDGITFIGILCACTHMGLVEEGLSYFQSMAMDYSIVPQ-IEHYGCM------ 438 (589)
Q Consensus 366 ~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~~l------ 438 (589)
.++.+|.+.|++++|+..|+++.+.. +.+..++..++..+...|++++|...|+++... .|+ ...+..+
T Consensus 182 ~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~p~~~~~~~~~~~~~~~ 257 (450)
T 2y4t_A 182 LRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHELSLSEVRECLKL---DQDHKRCFAHYKQVKKL 257 (450)
T ss_dssp HHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCChHHHHHHHHHHHHH
Confidence 99999999999999999999998852 446788999999999999999999999999753 344 4444444
Q ss_pred ------HHHHHhcCCHHHHHHHHhhC-CCCCC-----HHHHHHHHHHHhcCCCHHHHHHHHHHHHccCCCCCcchHHHHH
Q 007808 439 ------VDLLARAGRLAEAVDFVKRM-PIEAD-----AVIWANLLGSCRVYKNVELAELALERLTELEPKNPANFVMLSN 506 (589)
Q Consensus 439 ------~~~~~~~g~~~~A~~~~~~~-~~~p~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~ 506 (589)
+..+.+.|++++|++.|+++ ...|+ ...+..+..++.+.|++++|+..++++++++|+++.++..++.
T Consensus 258 ~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~ 337 (450)
T 2y4t_A 258 NKLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPDNVNALKDRAE 337 (450)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHH
Confidence 78999999999999999998 34554 3467888899999999999999999999999999999999999
Q ss_pred HHhhcCChHHHHHHHHHhhhCCCccCCccceeeeCCeeeeeccccCCCchHHHHHHHHHHHH
Q 007808 507 IYGDLGRWKDVARIKVAMRDTGFKKLPGCSSIEVNEVVMLGCLSRELDRKSIVRAEANMIKL 568 (589)
Q Consensus 507 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~ 568 (589)
+|...|++++|+..++++. +++|+++.++..++.+...
T Consensus 338 ~~~~~~~~~~A~~~~~~al------------------------~~~p~~~~~~~~l~~~~~~ 375 (450)
T 2y4t_A 338 AYLIEEMYDEAIQDYETAQ------------------------EHNENDQQIREGLEKAQRL 375 (450)
T ss_dssp HHHHTTCHHHHHHHHHHHH------------------------TTSSSCHHHHHHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHH------------------------HhCcchHHHHHHHHHHHHH
Confidence 9999999999999999996 7889999999999965443
No 12
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.93 E-value=3.5e-24 Score=219.72 Aligned_cols=390 Identities=8% Similarity=-0.058 Sum_probs=302.7
Q ss_pred ehHHHHHHHHHhCCCHHHHHHHHHhCC--CCChhHHHHHHHHHhcCCChHHHHHHhcccCC---CChhhHHHHHHHHHhc
Q 007808 167 VVWTSMINGYISCGDIVSARCLFELAP--ERDVILWNTIVSGYIDVRNMIEARKLFDQMPK---KDVISWNTMLSGYANN 241 (589)
Q Consensus 167 ~~~~~l~~~~~~~g~~~~a~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~ 241 (589)
..+......+.+.|++++|...|+.+. .|+..++..++.++.+.|++++|...++++.+ .+..++..+..++.+.
T Consensus 7 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 86 (514)
T 2gw1_A 7 LALKDKGNQFFRNKKYDDAIKYYNWALELKEDPVFYSNLSACYVSVGDLKKVVEMSTKALELKPDYSKVLLRRASANEGL 86 (514)
T ss_dssp HHHHHHHHHHHHTSCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhcCccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccChHHHHHHHHHHHHHHHH
Confidence 456777888899999999999998875 36788888999999999999999999988764 3556888888999999
Q ss_pred CCHHHHHHHHhhCCC---CCchhHHHHHHHHHhCCChHHHHHHHHHHH--------------------------------
Q 007808 242 GDVEECKRLFEEMPE---RNVFSWNGLIGGYANNGLFFEVLDAFKRML-------------------------------- 286 (589)
Q Consensus 242 ~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-------------------------------- 286 (589)
|++++|...|+.+.+ ++......++..+........+.+.+..+.
T Consensus 87 g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (514)
T 2gw1_A 87 GKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMAS 166 (514)
T ss_dssp TCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHHHHH
T ss_pred hhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHHHH
Confidence 999999999988764 223333333333322221111111111100
Q ss_pred --HcCCC---------CCcHHHHHHHHHHHHh---cCChhHHHHHHHHHHH-----cCC--------CCChhHHHHHHHH
Q 007808 287 --TEGRV---------FPNDATIVTVLSACAR---LGALDFSKWVHVYAEY-----NGY--------QGNVCVGNALIDM 339 (589)
Q Consensus 287 --~~~~~---------~p~~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~-----~~~--------~~~~~~~~~l~~~ 339 (589)
..... +.+...+......+.. .|+++.|...+..+.+ ... +.+..++..++..
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (514)
T 2gw1_A 167 FFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIF 246 (514)
T ss_dssp HHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHH
T ss_pred HHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHH
Confidence 00000 1113344444444443 8999999999999988 311 2345677888999
Q ss_pred HHhcCChHHHHHHHhhCC--CCCcchHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCcHHHHHH
Q 007808 340 YAKCGIIENAVDVFNSMD--TKDLITWNTIISGLAMHGRGAGALSLFHEMKNAGEMPDGITFIGILCACTHMGLVEEGLS 417 (589)
Q Consensus 340 ~~~~g~~~~A~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~ 417 (589)
+...|++++|...|+++. .|+...+..+...+...|++++|+..++++.... +.+...+..+...+...|++++|..
T Consensus 247 ~~~~~~~~~A~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~ 325 (514)
T 2gw1_A 247 KFLKNDPLGAHEDIKKAIELFPRVNSYIYMALIMADRNDSTEYYNYFDKALKLD-SNNSSVYYHRGQMNFILQNYDQAGK 325 (514)
T ss_dssp HHHSSCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTC-TTCTHHHHHHHHHHHHTTCTTHHHH
T ss_pred HHHCCCHHHHHHHHHHHHhhCccHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcC-cCCHHHHHHHHHHHHHhCCHHHHHH
Confidence 999999999999999875 3447788889999999999999999999999853 3466788889999999999999999
Q ss_pred HHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHhhC-CCCC-CHHHHHHHHHHHhcCCCHHHHHHHHHHHHccCC
Q 007808 418 YFQSMAMDYSIVPQIEHYGCMVDLLARAGRLAEAVDFVKRM-PIEA-DAVIWANLLGSCRVYKNVELAELALERLTELEP 495 (589)
Q Consensus 418 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p 495 (589)
.++++... .+.+...+..++..|...|++++|+..++++ ...| +...+..+...+...|++++|...++++++..|
T Consensus 326 ~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~ 403 (514)
T 2gw1_A 326 DFDKAKEL--DPENIFPYIQLACLAYRENKFDDCETLFSEAKRKFPEAPEVPNFFAEILTDKNDFDKALKQYDLAIELEN 403 (514)
T ss_dssp HHHHHHHT--CSSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHh--ChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhh
Confidence 99999753 3345778889999999999999999999987 2233 567788888999999999999999999999999
Q ss_pred CCCc------chHHHHHHHhh---cCChHHHHHHHHHhhhCCCccCCccceeeeCCeeeeeccccCCCchHHHHHHHHHH
Q 007808 496 KNPA------NFVMLSNIYGD---LGRWKDVARIKVAMRDTGFKKLPGCSSIEVNEVVMLGCLSRELDRKSIVRAEANMI 566 (589)
Q Consensus 496 ~~~~------~~~~l~~~~~~---~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~~ 566 (589)
+++. .+..++.++.. .|++++|++.++++. +.+|+++.++..++.+|
T Consensus 404 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~------------------------~~~~~~~~~~~~la~~~ 459 (514)
T 2gw1_A 404 KLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKAS------------------------KLDPRSEQAKIGLAQMK 459 (514)
T ss_dssp TSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHH------------------------HHCTTCHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHH------------------------HhCcccHHHHHHHHHHH
Confidence 8766 89999999999 999999999999986 67899999999999999
Q ss_pred HHcccCCCCcchHhhhh
Q 007808 567 KLLPQNNHPLTFIVVIF 583 (589)
Q Consensus 567 ~~~~~~~~~~~~~~~~~ 583 (589)
...|+.++|+.+.....
T Consensus 460 ~~~g~~~~A~~~~~~a~ 476 (514)
T 2gw1_A 460 LQQEDIDEAITLFEESA 476 (514)
T ss_dssp HHTTCHHHHHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHH
Confidence 99999998888776543
No 13
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.91 E-value=4.2e-22 Score=193.91 Aligned_cols=322 Identities=13% Similarity=0.039 Sum_probs=222.4
Q ss_pred hhHHHHHHHHHhcCCChHHHHHHhcccCC---CChhhHHHHHHHHHhcCCHHHHHHHHhhCCC--C-CchhHHHHHHHHH
Q 007808 197 VILWNTIVSGYIDVRNMIEARKLFDQMPK---KDVISWNTMLSGYANNGDVEECKRLFEEMPE--R-NVFSWNGLIGGYA 270 (589)
Q Consensus 197 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~ 270 (589)
+..+..+...+...|++++|...|+++.+ .+..++..+...+...|++++|...|+++.+ | +...|..+...+.
T Consensus 3 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 82 (359)
T 3ieg_A 3 VEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLLL 82 (359)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHHH
Confidence 34455555566666666666666655543 2344555555555555555555555555443 2 3344555555555
Q ss_pred hCCChHHHHHHHHHHHHcCCCCC---c-HHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCh
Q 007808 271 NNGLFFEVLDAFKRMLTEGRVFP---N-DATIVTVLSACARLGALDFSKWVHVYAEYNGYQGNVCVGNALIDMYAKCGII 346 (589)
Q Consensus 271 ~~g~~~~A~~~~~~~~~~~~~~p---~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 346 (589)
..|++++|+..|+++.+.. | + ...+..+..... ...+..+...+...|++
T Consensus 83 ~~~~~~~A~~~~~~~~~~~---~~~~~~~~~~~~l~~~~~-----------------------~~~~~~~a~~~~~~~~~ 136 (359)
T 3ieg_A 83 KQGKLDEAEDDFKKVLKSN---PSEQEEKEAESQLVKADE-----------------------MQRLRSQALDAFDGADY 136 (359)
T ss_dssp HHTCHHHHHHHHHHHHTSC---CCHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHTTCH
T ss_pred HcCChHHHHHHHHHHHhcC---CcccChHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHccCH
Confidence 5555555555555555532 3 1 111111110000 00122235677788888
Q ss_pred HHHHHHHhhCC---CCCcchHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCcHHHHHHHHHHhH
Q 007808 347 ENAVDVFNSMD---TKDLITWNTIISGLAMHGRGAGALSLFHEMKNAGEMPDGITFIGILCACTHMGLVEEGLSYFQSMA 423 (589)
Q Consensus 347 ~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 423 (589)
++|.+.++++. +.+...+..+...+...|++++|+..++++.+.. +.+...+..+...+...|++++|...++++.
T Consensus 137 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~ 215 (359)
T 3ieg_A 137 TAAITFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVRECL 215 (359)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 88888888765 3356678888888888888999998888888752 3466778888888888899999999888887
Q ss_pred HhcCCCCChHHHH------------HHHHHHHhcCCHHHHHHHHhhC-CCCCC-H----HHHHHHHHHHhcCCCHHHHHH
Q 007808 424 MDYSIVPQIEHYG------------CMVDLLARAGRLAEAVDFVKRM-PIEAD-A----VIWANLLGSCRVYKNVELAEL 485 (589)
Q Consensus 424 ~~~~~~~~~~~~~------------~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~----~~~~~l~~~~~~~g~~~~A~~ 485 (589)
+.. +.+...+. .++..+.+.|++++|++.++++ ...|+ . ..+..+..++...|++++|..
T Consensus 216 ~~~--~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~ 293 (359)
T 3ieg_A 216 KLD--QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIR 293 (359)
T ss_dssp HHC--TTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred hhC--ccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCHHHHHH
Confidence 532 22233222 3367799999999999999987 33444 3 234456688999999999999
Q ss_pred HHHHHHccCCCCCcchHHHHHHHhhcCChHHHHHHHHHhhhCCCccCCccceeeeCCeeeeeccccCCCchHHHHHHHHH
Q 007808 486 ALERLTELEPKNPANFVMLSNIYGDLGRWKDVARIKVAMRDTGFKKLPGCSSIEVNEVVMLGCLSRELDRKSIVRAEANM 565 (589)
Q Consensus 486 ~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~ 565 (589)
.++++++.+|+++.++..++.+|.+.|++++|.+.++++. +++|+++.+...|+.+
T Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~------------------------~~~p~~~~~~~~l~~~ 349 (359)
T 3ieg_A 294 ICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQ------------------------EHNENDQQIREGLEKA 349 (359)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH------------------------TTCTTCHHHHHHHHHH
T ss_pred HHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHH------------------------hcCCCChHHHHHHHHH
Confidence 9999999999999999999999999999999999999986 7899999999999999
Q ss_pred HHHccc
Q 007808 566 IKLLPQ 571 (589)
Q Consensus 566 ~~~~~~ 571 (589)
+..+++
T Consensus 350 ~~~~~~ 355 (359)
T 3ieg_A 350 QRLLKQ 355 (359)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 887764
No 14
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.89 E-value=9.1e-21 Score=182.18 Aligned_cols=286 Identities=12% Similarity=-0.009 Sum_probs=236.9
Q ss_pred CCchhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhHHHHH
Q 007808 257 RNVFSWNGLIGGYANNGLFFEVLDAFKRMLTEGRVFPNDATIVTVLSACARLGALDFSKWVHVYAEYNGYQGNVCVGNAL 336 (589)
Q Consensus 257 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 336 (589)
.+...+..++..+...|++++|+++|+++.+.. +.+...+..++.++...|++++|...+..+.+.. +.+...+..+
T Consensus 20 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l 96 (330)
T 3hym_B 20 ENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD--PFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAV 96 (330)
T ss_dssp CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHH
Confidence 455667777788888888888888888888765 3344455566777788888888888888888764 4567778888
Q ss_pred HHHHHhcC-ChHHHHHHHhhCCC---CCcchHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCcH
Q 007808 337 IDMYAKCG-IIENAVDVFNSMDT---KDLITWNTIISGLAMHGRGAGALSLFHEMKNAGEMPDGITFIGILCACTHMGLV 412 (589)
Q Consensus 337 ~~~~~~~g-~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~ 412 (589)
...+...| ++++|...|+++.+ .+...|..+...+...|++++|+..++++.+.. +.+...+..+...+...|++
T Consensus 97 ~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~ 175 (330)
T 3hym_B 97 GCYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM-KGCHLPMLYIGLEYGLTNNS 175 (330)
T ss_dssp HHHHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCSHHHHHHHHHHHHTTCH
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHhhH
Confidence 88888888 89999999887653 356788889999999999999999999998853 33456677788899999999
Q ss_pred HHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHhhCC-C----------CCCHHHHHHHHHHHhcCCCHH
Q 007808 413 EEGLSYFQSMAMDYSIVPQIEHYGCMVDLLARAGRLAEAVDFVKRMP-I----------EADAVIWANLLGSCRVYKNVE 481 (589)
Q Consensus 413 ~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~----------~p~~~~~~~l~~~~~~~g~~~ 481 (589)
++|.+.++++... .+.+...+..++..|...|++++|+..++++. . +.....+..+..++...|+++
T Consensus 176 ~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 253 (330)
T 3hym_B 176 KLAERFFSQALSI--APEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYA 253 (330)
T ss_dssp HHHHHHHHHHHTT--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHh--CCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHH
Confidence 9999999998752 34457788899999999999999999988761 1 334578888999999999999
Q ss_pred HHHHHHHHHHccCCCCCcchHHHHHHHhhcCChHHHHHHHHHhhhCCCccCCccceeeeCCeeeeeccccCCCchHHHHH
Q 007808 482 LAELALERLTELEPKNPANFVMLSNIYGDLGRWKDVARIKVAMRDTGFKKLPGCSSIEVNEVVMLGCLSRELDRKSIVRA 561 (589)
Q Consensus 482 ~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~ 561 (589)
+|...+++++++.|+++.++..++.+|.+.|++++|.+.++++. +++|+++.++..
T Consensus 254 ~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al------------------------~~~p~~~~~~~~ 309 (330)
T 3hym_B 254 EALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTAL------------------------GLRRDDTFSVTM 309 (330)
T ss_dssp HHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTT------------------------TTCSCCHHHHHH
T ss_pred HHHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHH------------------------ccCCCchHHHHH
Confidence 99999999999999999999999999999999999999999885 789999999999
Q ss_pred HHHHHH-HcccC
Q 007808 562 EANMIK-LLPQN 572 (589)
Q Consensus 562 l~~~~~-~~~~~ 572 (589)
+++++. ..|+.
T Consensus 310 l~~~~~~~~g~~ 321 (330)
T 3hym_B 310 LGHCIEMYIGDS 321 (330)
T ss_dssp HHHHHHTTTTC-
T ss_pred HHHHHHHHhCch
Confidence 999984 55554
No 15
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.88 E-value=3.5e-20 Score=180.24 Aligned_cols=308 Identities=12% Similarity=0.059 Sum_probs=222.4
Q ss_pred eehHHHHHHHHHhCCCHHHHHHHHHhCCC---CChhHHHHHHHHHhcCCChHHHHHHhcccCC--C-ChhhHHHHHHHHH
Q 007808 166 VVVWTSMINGYISCGDIVSARCLFELAPE---RDVILWNTIVSGYIDVRNMIEARKLFDQMPK--K-DVISWNTMLSGYA 239 (589)
Q Consensus 166 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~-~~~~~~~l~~~~~ 239 (589)
+..+..+...+...|++++|...|+.+.+ .+..++..+..++...|++++|...++++.+ | +...+..+...+.
T Consensus 3 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 82 (359)
T 3ieg_A 3 VEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLLL 82 (359)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHHH
Confidence 45678889999999999999999998753 3678999999999999999999999999875 3 6678899999999
Q ss_pred hcCCHHHHHHHHhhCCCCCc------hhHHHH------------HHHHHhCCChHHHHHHHHHHHHcCCCCCcHHHHHHH
Q 007808 240 NNGDVEECKRLFEEMPERNV------FSWNGL------------IGGYANNGLFFEVLDAFKRMLTEGRVFPNDATIVTV 301 (589)
Q Consensus 240 ~~~~~~~A~~~~~~~~~~~~------~~~~~l------------~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l 301 (589)
..|++++|...|+++.+.++ ..+..+ ...+...|++++|++.++++.+..
T Consensus 83 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~------------ 150 (359)
T 3ieg_A 83 KQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVC------------ 150 (359)
T ss_dssp HHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC------------
T ss_pred HcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC------------
Confidence 99999999999999876332 333333 344555555555555555555443
Q ss_pred HHHHHhcCChhHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHhhCCC---CCcchHHHHHHHHHhCCChH
Q 007808 302 LSACARLGALDFSKWVHVYAEYNGYQGNVCVGNALIDMYAKCGIIENAVDVFNSMDT---KDLITWNTIISGLAMHGRGA 378 (589)
Q Consensus 302 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~ 378 (589)
+.+...+..+...+...|++++|...++++.+ .+...+..+...+...|+++
T Consensus 151 -------------------------~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~ 205 (359)
T 3ieg_A 151 -------------------------VWDAELRELRAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHE 205 (359)
T ss_dssp -------------------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSCCHHHHHHHHHHHHHHTCHH
T ss_pred -------------------------CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHH
Confidence 22334444455555555555555555554432 23445666666666667777
Q ss_pred HHHHHHHHHHHCCCCCC-HhHH------------HHHHHHHhccCcHHHHHHHHHHhHHhcCCCCCh--HHHHHHHHHHH
Q 007808 379 GALSLFHEMKNAGEMPD-GITF------------IGILCACTHMGLVEEGLSYFQSMAMDYSIVPQI--EHYGCMVDLLA 443 (589)
Q Consensus 379 ~A~~~~~~m~~~~~~p~-~~~~------------~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~--~~~~~l~~~~~ 443 (589)
+|...+++..+. .|+ ...+ ..+...+...|++++|...++++.......+.. ..+..+..+|.
T Consensus 206 ~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~ 283 (359)
T 3ieg_A 206 LSLSEVRECLKL--DQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFS 283 (359)
T ss_dssp HHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhh--CccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHH
Confidence 777777766653 232 2222 233666888899999999999887643211111 33556788999
Q ss_pred hcCCHHHHHHHHhhC-CCCC-CHHHHHHHHHHHhcCCCHHHHHHHHHHHHccCCCCCcchHHHHHHHhhcC
Q 007808 444 RAGRLAEAVDFVKRM-PIEA-DAVIWANLLGSCRVYKNVELAELALERLTELEPKNPANFVMLSNIYGDLG 512 (589)
Q Consensus 444 ~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 512 (589)
+.|++++|++.++++ ...| +...+..+...+...|++++|.+.|+++++++|+++.++..+..+....+
T Consensus 284 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~ 354 (359)
T 3ieg_A 284 KDEKPVEAIRICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQIREGLEKAQRLLK 354 (359)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHH
T ss_pred HccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHH
Confidence 999999999999988 3344 67888889999999999999999999999999999988888887765443
No 16
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.86 E-value=7.5e-21 Score=185.89 Aligned_cols=315 Identities=12% Similarity=-0.016 Sum_probs=202.0
Q ss_pred CCChHHHHHHhcccCCCChhhHHHHHHHHHhcCCHHHHHH-HHhhCCC--C-----CchhHHHHHHHHHhCCChHHHHHH
Q 007808 210 VRNMIEARKLFDQMPKKDVISWNTMLSGYANNGDVEECKR-LFEEMPE--R-----NVFSWNGLIGGYANNGLFFEVLDA 281 (589)
Q Consensus 210 ~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~-~~~~~~~--~-----~~~~~~~l~~~~~~~g~~~~A~~~ 281 (589)
.+.++.+...|+.+.+.+.. .+.-.|++++|.. .|++..+ | +...+..+...+...|++++|+..
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~ 86 (368)
T 1fch_A 14 VDFWDKLQAELEEMAKRDAE-------AHPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLL 86 (368)
T ss_dssp ---------------------------------------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHH
T ss_pred cccHHHHHHHHHHHHcCCch-------hhHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHH
Confidence 34455555555554432222 2334577788887 7776554 1 245577778888888888888888
Q ss_pred HHHHHHcCCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHhhCCCCCc
Q 007808 282 FKRMLTEGRVFPNDATIVTVLSACARLGALDFSKWVHVYAEYNGYQGNVCVGNALIDMYAKCGIIENAVDVFNSMDTKDL 361 (589)
Q Consensus 282 ~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 361 (589)
|+++.+.. +.+...+..+..++...|+++.|...+..+.+.. +.+..++..++.+|...
T Consensus 87 ~~~al~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~------------------ 145 (368)
T 1fch_A 87 FEAAVQQD--PKHMEAWQYLGTTQAENEQELLAISALRRCLELK-PDNQTALMALAVSFTNE------------------ 145 (368)
T ss_dssp HHHHHHSC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHT------------------
T ss_pred HHHHHHhC--CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHc------------------
Confidence 88888764 3455566666777777777777777777766654 33444444455555444
Q ss_pred chHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCH-hHHH---------------HHHHHHhccCcHHHHHHHHHHhHHh
Q 007808 362 ITWNTIISGLAMHGRGAGALSLFHEMKNAGEMPDG-ITFI---------------GILCACTHMGLVEEGLSYFQSMAMD 425 (589)
Q Consensus 362 ~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~-~~~~---------------~l~~~~~~~g~~~~A~~~~~~~~~~ 425 (589)
|++++|+..++++... .|+. ..+. ..+..+...|++++|...++++...
T Consensus 146 -------------g~~~~A~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~ 210 (368)
T 1fch_A 146 -------------SLQRQACEILRDWLRY--TPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRL 210 (368)
T ss_dssp -------------TCHHHHHHHHHHHHHT--STTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -------------CCHHHHHHHHHHHHHh--CcCcHHHHHHHHHHhhhhcccHHHHHHHHHhhcccHHHHHHHHHHHHHh
Confidence 4555555555554442 1211 1111 0223333889999999999999765
Q ss_pred cCCCCChHHHHHHHHHHHhcCCHHHHHHHHhhC-CCCC-CHHHHHHHHHHHhcCCCHHHHHHHHHHHHccCCCCCcchHH
Q 007808 426 YSIVPQIEHYGCMVDLLARAGRLAEAVDFVKRM-PIEA-DAVIWANLLGSCRVYKNVELAELALERLTELEPKNPANFVM 503 (589)
Q Consensus 426 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~ 503 (589)
....++..++..++..|.+.|++++|+..++++ ...| +...+..+...+...|++++|+..+++++++.|+++.++..
T Consensus 211 ~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 290 (368)
T 1fch_A 211 DPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYN 290 (368)
T ss_dssp STTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred CcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHH
Confidence 333235788999999999999999999999987 3344 57888999999999999999999999999999999999999
Q ss_pred HHHHHhhcCChHHHHHHHHHhhhCCCccCCccceeeeCCeeeeeccccCCCchHHHHHHHHHHHHcccCCCCcchHh
Q 007808 504 LSNIYGDLGRWKDVARIKVAMRDTGFKKLPGCSSIEVNEVVMLGCLSRELDRKSIVRAEANMIKLLPQNNHPLTFIV 580 (589)
Q Consensus 504 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~ 580 (589)
++.+|.+.|++++|+..++++.+.. |+.... -...+|..+.++..++.+|..+|+.++|.....
T Consensus 291 l~~~~~~~g~~~~A~~~~~~al~~~--~~~~~~-----------~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 354 (368)
T 1fch_A 291 LGISCINLGAHREAVEHFLEALNMQ--RKSRGP-----------RGEGGAMSENIWSTLRLALSMLGQSDAYGAADA 354 (368)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHH--HTC-----------------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHT
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC--CCCCCc-----------cccccchhhHHHHHHHHHHHHhCChHhHHHhHH
Confidence 9999999999999999999986211 100000 002345559999999999999999988776543
No 17
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.86 E-value=2e-17 Score=175.46 Aligned_cols=381 Identities=11% Similarity=0.072 Sum_probs=298.5
Q ss_pred ccHHHHHHHHhccCChHHHHHHHHHHHHhCC--CCchHHHhHHHHHHHcCCChHHHHHHHccCCCCCeehHHHHHHHHHh
Q 007808 101 FTFPIVLKSCVKINALREGEELHCLVLKNGF--RANIFVGTALIELYSTGKAIEAAYKVFGEMDERNVVVWTSMINGYIS 178 (589)
Q Consensus 101 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~ 178 (589)
.-.....+++...|.+.+|.+++++..-.+- .-+...-+.|+.+..+. +..+..++.++...-+ ...+...+..
T Consensus 986 eeVs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~~d---~~eIA~Iai~ 1061 (1630)
T 1xi4_A 986 EEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDNYD---APDIANIAIS 1061 (1630)
T ss_pred HHhHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhhcc---HHHHHHHHHh
Confidence 3445667888899999999999999884321 13445666677766666 5566666666655323 4568889999
Q ss_pred CCCHHHHHHHHHhCCCCChhHHHHHHHHHhcCCChHHHHHHhcccCCCChhhHHHHHHHHHhcCCHHHHHHHHhhCCCCC
Q 007808 179 CGDIVSARCLFELAPERDVILWNTIVSGYIDVRNMIEARKLFDQMPKKDVISWNTMLSGYANNGDVEECKRLFEEMPERN 258 (589)
Q Consensus 179 ~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 258 (589)
.|.+++|..+|++.... ....+.++ ...|++++|.++.++. .+..+|..+..++.+.|++++|.+.|.+. .|
T Consensus 1062 lglyEEAf~IYkKa~~~-~~A~~VLi---e~i~nldrAiE~Aerv--n~p~vWsqLAKAql~~G~~kEAIdsYiKA--dD 1133 (1630)
T 1xi4_A 1062 NELFEEAFAIFRKFDVN-TSAVQVLI---EHIGNLDRAYEFAERC--NEPAVWSQLAKAQLQKGMVKEAIDSYIKA--DD 1133 (1630)
T ss_pred CCCHHHHHHHHHHcCCH-HHHHHHHH---HHHhhHHHHHHHHHhc--CCHHHHHHHHHHHHhCCCHHHHHHHHHhc--CC
Confidence 99999999999997522 22223332 2778999999999877 44778889999999999999999999775 67
Q ss_pred chhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhHHHHHHH
Q 007808 259 VFSWNGLIGGYANNGLFFEVLDAFKRMLTEGRVFPNDATIVTVLSACARLGALDFSKWVHVYAEYNGYQGNVCVGNALID 338 (589)
Q Consensus 259 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 338 (589)
...|..++.++.+.|++++|++.|....+.. ++....+.++.+|++.++++....+. + .++...+..+..
T Consensus 1134 ~say~eVa~~~~~lGkyEEAIeyL~mArk~~---~e~~Idt~LafaYAKl~rleele~fI----~---~~n~ad~~~iGd 1203 (1630)
T 1xi4_A 1134 PSSYMEVVQAANTSGNWEELVKYLQMARKKA---RESYVETELIFALAKTNRLAELEEFI----N---GPNNAHIQQVGD 1203 (1630)
T ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc---ccccccHHHHHHHHhhcCHHHHHHHH----h---CCCHHHHHHHHH
Confidence 7788889999999999999999999888754 44434445888999998888644442 2 345667778999
Q ss_pred HHHhcCChHHHHHHHhhCCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCcHHHHHHH
Q 007808 339 MYAKCGIIENAVDVFNSMDTKDLITWNTIISGLAMHGRGAGALSLFHEMKNAGEMPDGITFIGILCACTHMGLVEEGLSY 418 (589)
Q Consensus 339 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~ 418 (589)
.|...|++++|..+|... ..|..+...|.+.|++++|++.+++. .+..+|..+..+|...|++..|...
T Consensus 1204 ~le~eg~YeeA~~~Y~kA-----~ny~rLA~tLvkLge~q~AIEaarKA------~n~~aWkev~~acve~~Ef~LA~~c 1272 (1630)
T 1xi4_A 1204 RCYDEKMYDAAKLLYNNV-----SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMC 1272 (1630)
T ss_pred HHHhcCCHHHHHHHHHhh-----hHHHHHHHHHHHhCCHHHHHHHHHHh------CCHHHHHHHHHHHhhhhHHHHHHHH
Confidence 999999999999999985 48999999999999999999999876 3558899999999999999999987
Q ss_pred HHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHhhC-CCCCC-HHHHHHHHHHH--hcCCCHHHHHHHHHHHHccC
Q 007808 419 FQSMAMDYSIVPQIEHYGCMVDLLARAGRLAEAVDFVKRM-PIEAD-AVIWANLLGSC--RVYKNVELAELALERLTELE 494 (589)
Q Consensus 419 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~--~~~g~~~~A~~~~~~~~~~~ 494 (589)
...+ ..++..+..++..|.+.|.+++|+.+++.. +.+|. ...|.-+...+ .+-++..++.+.|..-..+.
T Consensus 1273 gl~I------iv~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gmftELaiLyaKy~peklmEhlk~f~~rini~ 1346 (1630)
T 1xi4_A 1273 GLHI------VVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIP 1346 (1630)
T ss_pred HHhh------hcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHHHHHHHHHHHhCCHHHHHHHHHHHHHhcccc
Confidence 6543 356667788999999999999999999877 44543 34454455444 45667888888888888777
Q ss_pred C-----CCCcchHHHHHHHhhcCChHHHHHH
Q 007808 495 P-----KNPANFVMLSNIYGDLGRWKDVARI 520 (589)
Q Consensus 495 p-----~~~~~~~~l~~~~~~~g~~~~A~~~ 520 (589)
| .+...|..++-+|.+.|+|+.|...
T Consensus 1347 k~~r~~e~~~lW~elv~LY~~~~e~dnA~~t 1377 (1630)
T 1xi4_A 1347 KVLRAAEQAHLWAELVFLYDKYEEYDNAIIT 1377 (1630)
T ss_pred hHhHHHHHHHHHHHHHHHHHhcccHHHHHHH
Confidence 7 6788899999999999999999865
No 18
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.85 E-value=4e-19 Score=170.62 Aligned_cols=286 Identities=12% Similarity=0.013 Sum_probs=231.0
Q ss_pred CChhhHHHHHHHHHhcCCHHHHHHHHhhCCC---CCchhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCcHHHHHHHH
Q 007808 226 KDVISWNTMLSGYANNGDVEECKRLFEEMPE---RNVFSWNGLIGGYANNGLFFEVLDAFKRMLTEGRVFPNDATIVTVL 302 (589)
Q Consensus 226 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~ 302 (589)
.+...+..+...+...|++++|.++|+++.+ .+...+..++.++...|++++|+..++++.+.. +.+...+..+.
T Consensus 20 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~ 97 (330)
T 3hym_B 20 ENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLY--PSNPVSWFAVG 97 (330)
T ss_dssp CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTSTHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC--cCCHHHHHHHH
Confidence 4556667777778888888888888887764 345566677788888888888888888888865 34566777788
Q ss_pred HHHHhcC-ChhHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHhhCC---CCCcchHHHHHHHHHhCCChH
Q 007808 303 SACARLG-ALDFSKWVHVYAEYNGYQGNVCVGNALIDMYAKCGIIENAVDVFNSMD---TKDLITWNTIISGLAMHGRGA 378 (589)
Q Consensus 303 ~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~ 378 (589)
..+...| +++.|...+..+.+.. +.+...+..+...+...|++++|...|+++. +.+...+..+...|...|+++
T Consensus 98 ~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~ 176 (330)
T 3hym_B 98 CYYLMVGHKNEHARRYLSKATTLE-KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSK 176 (330)
T ss_dssp HHHHHSCSCHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCSHHHHHHHHHHHHTTCHH
T ss_pred HHHHHhhhhHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhHH
Confidence 8888888 8888888888888765 4466778888889999999999999988775 335567788899999999999
Q ss_pred HHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCcHHHHHHHHHHhHHhcC-------CCCChHHHHHHHHHHHhcCCHHHH
Q 007808 379 GALSLFHEMKNAGEMPDGITFIGILCACTHMGLVEEGLSYFQSMAMDYS-------IVPQIEHYGCMVDLLARAGRLAEA 451 (589)
Q Consensus 379 ~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-------~~~~~~~~~~l~~~~~~~g~~~~A 451 (589)
+|+..++++.+.. +.+...+..+...+...|++++|...++++..... .+.....+..++.+|.+.|++++|
T Consensus 177 ~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 255 (330)
T 3hym_B 177 LAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEA 255 (330)
T ss_dssp HHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHH
Confidence 9999999998853 34667888899999999999999999998876421 133467889999999999999999
Q ss_pred HHHHhhC-CCCC-CHHHHHHHHHHHhcCCCHHHHHHHHHHHHccCCCCCcchHHHHHHH-hhcCChH
Q 007808 452 VDFVKRM-PIEA-DAVIWANLLGSCRVYKNVELAELALERLTELEPKNPANFVMLSNIY-GDLGRWK 515 (589)
Q Consensus 452 ~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~-~~~g~~~ 515 (589)
++.++++ ...| +...+..+...+...|++++|.+.++++++++|+++..+..++.++ ...|+.+
T Consensus 256 ~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~g~~~ 322 (330)
T 3hym_B 256 LDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSVTMLGHCIEMYIGDSE 322 (330)
T ss_dssp HHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSCCHHHHHHHHHHHHTTTTC--
T ss_pred HHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCCCchHHHHHHHHHHHHHhCchh
Confidence 9999987 2333 5678888899999999999999999999999999999999999998 4566543
No 19
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.85 E-value=1.6e-18 Score=175.94 Aligned_cols=318 Identities=11% Similarity=0.036 Sum_probs=229.4
Q ss_pred CCCHHHHHHHHHhCCCC-ChhHHHHHHHHHhc----CCChHHHHHHhcccCC-CChhhHHHHHHHHHh----cCCHHHHH
Q 007808 179 CGDIVSARCLFELAPER-DVILWNTIVSGYID----VRNMIEARKLFDQMPK-KDVISWNTMLSGYAN----NGDVEECK 248 (589)
Q Consensus 179 ~g~~~~a~~~~~~~~~~-~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~-~~~~~~~~l~~~~~~----~~~~~~A~ 248 (589)
.+++++|..+|++..+. +...+..+...|.. .+++++|...|++..+ .+...+..+...|.. .++.++|.
T Consensus 92 ~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~ 171 (490)
T 2xm6_A 92 PQDYAQAVIWYKKAALKGLPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQGRDSGQQSMGDAYFEGDGVTRDYVMAR 171 (490)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHH
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHH
Confidence 44444444444443322 44445555555555 5566666666665543 345556666666665 66777777
Q ss_pred HHHhhCCC-CCchhHHHHHHHHHh----CCChHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHh----cCChhHHHHHHH
Q 007808 249 RLFEEMPE-RNVFSWNGLIGGYAN----NGLFFEVLDAFKRMLTEGRVFPNDATIVTVLSACAR----LGALDFSKWVHV 319 (589)
Q Consensus 249 ~~~~~~~~-~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~~~~~~a~~~~~ 319 (589)
+.|++..+ .+..++..+...|.. .++.++|++.|++..+.+ +...+..+...+.. .++.++|...++
T Consensus 172 ~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~----~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~ 247 (490)
T 2xm6_A 172 EWYSKAAEQGNVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSG----DELGQLHLADMYYFGIGVTQDYTQSRVLFS 247 (490)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT----CHHHHHHHHHHHHHTSSSCCCHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC----CHHHHHHHHHHHHcCCCCCCCHHHHHHHHH
Confidence 77776654 456677777777777 788888888888888765 34556666666665 678888888888
Q ss_pred HHHHcCCCCChhHHHHHHHHHHh----cCChHHHHHHHhhCCCC-CcchHHHHHHHHHhC-----CChHHHHHHHHHHHH
Q 007808 320 YAEYNGYQGNVCVGNALIDMYAK----CGIIENAVDVFNSMDTK-DLITWNTIISGLAMH-----GRGAGALSLFHEMKN 389 (589)
Q Consensus 320 ~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~-~~~~~~~l~~~~~~~-----~~~~~A~~~~~~m~~ 389 (589)
+..+.+ +...+..+...|.. .++.++|.+.|++..+. ++..+..+...|... +++++|+.+|++..+
T Consensus 248 ~a~~~~---~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~ 324 (490)
T 2xm6_A 248 QSAEQG---NSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQGNSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAE 324 (490)
T ss_dssp HHHTTT---CHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHH
T ss_pred HHHHCC---CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHh
Confidence 887754 45566667777777 78889999988877643 566777788888877 899999999999988
Q ss_pred CCCCCCHhHHHHHHHHHhccC---cHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHh----cCCHHHHHHHHhhCCCCC
Q 007808 390 AGEMPDGITFIGILCACTHMG---LVEEGLSYFQSMAMDYSIVPQIEHYGCMVDLLAR----AGRLAEAVDFVKRMPIEA 462 (589)
Q Consensus 390 ~~~~p~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~p 462 (589)
.| +...+..+...|...| ++++|.++|++..+. .++..+..|...|.. .+++++|++.|++.....
T Consensus 325 ~~---~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~----~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~ 397 (490)
T 2xm6_A 325 QG---DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAK----GEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG 397 (490)
T ss_dssp TT---CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred cC---CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHC----CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC
Confidence 65 4456667777776655 889999999988653 467788888999988 889999999999883334
Q ss_pred CHHHHHHHHHHHhc----CCCHHHHHHHHHHHHccCCC---CCcchHHHHHHHhh
Q 007808 463 DAVIWANLLGSCRV----YKNVELAELALERLTELEPK---NPANFVMLSNIYGD 510 (589)
Q Consensus 463 ~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~p~---~~~~~~~l~~~~~~ 510 (589)
+...+..+...|.. .++.++|...|+++.+.+|+ ++.+...++.++..
T Consensus 398 ~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~~a~~~l~~~~~~ 452 (490)
T 2xm6_A 398 LSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTNDMNLFGTENRNITEKKLTAK 452 (490)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHTTSCHH
T ss_pred CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCCCcCCHHHHHHHHhcCHh
Confidence 67777888888877 89999999999999998844 67777777776654
No 20
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.85 E-value=7.3e-17 Score=171.21 Aligned_cols=481 Identities=10% Similarity=0.057 Sum_probs=342.3
Q ss_pred HHHhCCCCCccchHHHHHHHHccCChhHHHHHhhcCCCCCcccHHHHHHHHHcCCChhHHHHHHHHhhhC----CCCCCc
Q 007808 25 VVTSGLEKSDYITPRIITACAQLKQMTYARKMFDKITDQNVVSWNAMFNGYAQNEFHRTVVVLFTQMKKL----DAMPNC 100 (589)
Q Consensus 25 ~~~~g~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~----~~~p~~ 100 (589)
-...| ..++.++|.|...|...++-++. .+. .|..-=..++.-||...++.-|.-.|++-.-. .+....
T Consensus 865 ~~~~g-~~~~~~hnalakiyid~n~npe~--fL~----~n~~yd~~~vgkyce~rDp~la~iay~~g~~d~eli~vt~~n 937 (1630)
T 1xi4_A 865 RIHEG-CEEPATHNALAKIYIDSNNNPER--FLR----ENPYYDSRVVGKYCEKRDPHLACVAYERGQCDLELINVCNEN 937 (1630)
T ss_pred HHhCC-CCCHHHHHHHHHHHhccCCCHHH--Hhh----ccCcccHHHHHHHHHhcCcchHHHHhcccCCcHHHHHHHhcc
Confidence 34445 56778888888888876543322 111 12222223344445444544444333320000 011112
Q ss_pred ccHHHHHHHHhccCChHH-----------HHHHHHHHHHhCC--CCchHHHhHHHHHHHcCCChHHHHHHHccCCC-C--
Q 007808 101 FTFPIVLKSCVKINALRE-----------GEELHCLVLKNGF--RANIFVGTALIELYSTGKAIEAAYKVFGEMDE-R-- 164 (589)
Q Consensus 101 ~~~~~ll~~~~~~~~~~~-----------a~~~~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-~-- 164 (589)
..|....+.+.+..+.+. =.++.++.....+ ..++.--...++.|...|...+|+++++++.- +
T Consensus 938 ~l~k~~arylv~r~d~~lW~~vl~~~n~~RR~Lidqv~a~aL~e~~~PeeVs~~vKaf~~aglp~EaieLLEKivl~~s~ 1017 (1630)
T 1xi4_A 938 SLFKSLSRYLVRRKDPELWGSVLLESNPYRRPLIDQVVQTALSETQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSV 1017 (1630)
T ss_pred hhHHHHHHHHHHhcCHHHHHHHhcCCcHHHHHHHHHHHHhhcccccCHHHhHHHHHHHHhCCCHHHHHHHHHHHHcCCCc
Confidence 233333333333333222 1233333333222 23344456678889999999999999999873 2
Q ss_pred ---CeehHHHHHHHHHhCCCHHHHHHHHHhCCCCChhHHHHHHHHHhcCCChHHHHHHhcccCCCChhhHHHHHHHHHhc
Q 007808 165 ---NVVVWTSMINGYISCGDIVSARCLFELAPERDVILWNTIVSGYIDVRNMIEARKLFDQMPKKDVISWNTMLSGYANN 241 (589)
Q Consensus 165 ---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~ 241 (589)
+....+.++.+..+. +..+..++......-+ ...+...+...|.+++|..+|++... .....+.+ +...
T Consensus 1018 fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~~d---~~eIA~Iai~lglyEEAf~IYkKa~~-~~~A~~VL---ie~i 1089 (1630)
T 1xi4_A 1018 FSEHRNLQNLLILTAIKA-DRTRVMEYINRLDNYD---APDIANIAISNELFEEAFAIFRKFDV-NTSAVQVL---IEHI 1089 (1630)
T ss_pred ccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhhcc---HHHHHHHHHhCCCHHHHHHHHHHcCC-HHHHHHHH---HHHH
Confidence 224566677777776 5566666666555333 44578888999999999999999742 11222222 2378
Q ss_pred CCHHHHHHHHhhCCCCCchhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 007808 242 GDVEECKRLFEEMPERNVFSWNGLIGGYANNGLFFEVLDAFKRMLTEGRVFPNDATIVTVLSACARLGALDFSKWVHVYA 321 (589)
Q Consensus 242 ~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 321 (589)
+++++|.++.++.. +..+|..+..++...|++++|++.|.+. -|...|..++.++.+.|+++++.+.+...
T Consensus 1090 ~nldrAiE~Aervn--~p~vWsqLAKAql~~G~~kEAIdsYiKA-------dD~say~eVa~~~~~lGkyEEAIeyL~mA 1160 (1630)
T 1xi4_A 1090 GNLDRAYEFAERCN--EPAVWSQLAKAQLQKGMVKEAIDSYIKA-------DDPSSYMEVVQAANTSGNWEELVKYLQMA 1160 (1630)
T ss_pred hhHHHHHHHHHhcC--CHHHHHHHHHHHHhCCCHHHHHHHHHhc-------CChHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 89999999999874 4678889999999999999999999663 46778888999999999999999999998
Q ss_pred HHcCCCCChhHHHHHHHHHHhcCChHHHHHHHhhCCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHhHHHH
Q 007808 322 EYNGYQGNVCVGNALIDMYAKCGIIENAVDVFNSMDTKDLITWNTIISGLAMHGRGAGALSLFHEMKNAGEMPDGITFIG 401 (589)
Q Consensus 322 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ 401 (589)
.+.. ++....+.++.+|++.+++++..... ..++...|..+...|...|++++|..+|... ..|..
T Consensus 1161 rk~~--~e~~Idt~LafaYAKl~rleele~fI---~~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~r 1226 (1630)
T 1xi4_A 1161 RKKA--RESYVETELIFALAKTNRLAELEEFI---NGPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGR 1226 (1630)
T ss_pred Hhhc--ccccccHHHHHHHHhhcCHHHHHHHH---hCCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHH
Confidence 8765 33334446999999999998655443 4556677888999999999999999999985 37899
Q ss_pred HHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHhcCCCHH
Q 007808 402 ILCACTHMGLVEEGLSYFQSMAMDYSIVPQIEHYGCMVDLLARAGRLAEAVDFVKRMPIEADAVIWANLLGSCRVYKNVE 481 (589)
Q Consensus 402 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~ 481 (589)
++.++.+.|++++|.+.+++. .+..+|..+..++...|++..|........ .++..+..++..|.+.|.++
T Consensus 1227 LA~tLvkLge~q~AIEaarKA-------~n~~aWkev~~acve~~Ef~LA~~cgl~Ii--v~~deLeeli~yYe~~G~fe 1297 (1630)
T 1xi4_A 1227 LASTLVHLGEYQAAVDGARKA-------NSTRTWKEVCFACVDGKEFRLAQMCGLHIV--VHADELEELINYYQDRGYFE 1297 (1630)
T ss_pred HHHHHHHhCCHHHHHHHHHHh-------CCHHHHHHHHHHHhhhhHHHHHHHHHHhhh--cCHHHHHHHHHHHHHcCCHH
Confidence 999999999999999999877 456889999999999999999999877643 34555678899999999999
Q ss_pred HHHHHHHHHHccCCCCCcchHHHHHHHhhc--CChHHHHHHHHHhhhCCCccCCccceeeeCCeeeeeccccCC-----C
Q 007808 482 LAELALERLTELEPKNPANFVMLSNIYGDL--GRWKDVARIKVAMRDTGFKKLPGCSSIEVNEVVMLGCLSREL-----D 554 (589)
Q Consensus 482 ~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~--g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-----~ 554 (589)
+|+.+++.++.++|.+...+..|+.+|.+. ++..+++++|..-. ++.| +
T Consensus 1298 EAI~LlE~aL~LeraH~gmftELaiLyaKy~peklmEhlk~f~~ri------------------------ni~k~~r~~e 1353 (1630)
T 1xi4_A 1298 ELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFWSRV------------------------NIPKVLRAAE 1353 (1630)
T ss_pred HHHHHHHHHhccChhHhHHHHHHHHHHHhCCHHHHHHHHHHHHHhc------------------------ccchHhHHHH
Confidence 999999999999999999999999988874 56777777765432 3333 7
Q ss_pred chHHHHHHHHHHHHcccCCCCc
Q 007808 555 RKSIVRAEANMIKLLPQNNHPL 576 (589)
Q Consensus 555 ~~~~~~~l~~~~~~~~~~~~~~ 576 (589)
++..+..+..+|.+.|+.+.|+
T Consensus 1354 ~~~lW~elv~LY~~~~e~dnA~ 1375 (1630)
T 1xi4_A 1354 QAHLWAELVFLYDKYEEYDNAI 1375 (1630)
T ss_pred HHHHHHHHHHHHHhcccHHHHH
Confidence 7888888999998888887665
No 21
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.84 E-value=1.6e-19 Score=176.37 Aligned_cols=319 Identities=13% Similarity=-0.014 Sum_probs=226.1
Q ss_pred hCCCHHHHHHHHHhCCCCChhHHHHHHHHHhcCCChHHHHH-HhcccCC-----C--ChhhHHHHHHHHHhcCCHHHHHH
Q 007808 178 SCGDIVSARCLFELAPERDVILWNTIVSGYIDVRNMIEARK-LFDQMPK-----K--DVISWNTMLSGYANNGDVEECKR 249 (589)
Q Consensus 178 ~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~-~~~~~~~-----~--~~~~~~~l~~~~~~~~~~~~A~~ 249 (589)
..+.++.+...++.+...+.. ++...|++++|.. .+++..+ | +...+..+...+.+.|++++|..
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~ 85 (368)
T 1fch_A 13 DVDFWDKLQAELEEMAKRDAE-------AHPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVL 85 (368)
T ss_dssp ----------------------------------------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHH
T ss_pred CcccHHHHHHHHHHHHcCCch-------hhHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHH
Confidence 334455555555555443332 3445689999998 8887664 2 35668889999999999999999
Q ss_pred HHhhCCC---CCchhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCC
Q 007808 250 LFEEMPE---RNVFSWNGLIGGYANNGLFFEVLDAFKRMLTEGRVFPNDATIVTVLSACARLGALDFSKWVHVYAEYNGY 326 (589)
Q Consensus 250 ~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 326 (589)
.|+++.+ .+..+|..+..++...|++++|+..|+++.+.. +.+..++..+...+...|++++|...+..+.+...
T Consensus 86 ~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 163 (368)
T 1fch_A 86 LFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELK--PDNQTALMALAVSFTNESLQRQACEILRDWLRYTP 163 (368)
T ss_dssp HHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTST
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc
Confidence 9999875 356788999999999999999999999999875 45678899999999999999999999999998652
Q ss_pred CCChhHHHHHHHHHHhcCChHHHHHHHhhCCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHHCCCCC-CHhHHHHHHHH
Q 007808 327 QGNVCVGNALIDMYAKCGIIENAVDVFNSMDTKDLITWNTIISGLAMHGRGAGALSLFHEMKNAGEMP-DGITFIGILCA 405 (589)
Q Consensus 327 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p-~~~~~~~l~~~ 405 (589)
.+...+..+... .. ...+ ...+..+...+ ..|++++|+..++++.+..... +..++..+...
T Consensus 164 -~~~~~~~~~~~~-------~~-------~~~~-~~~~~~~~~~~-~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~ 226 (368)
T 1fch_A 164 -AYAHLVTPAEEG-------AG-------GAGL-GPSKRILGSLL-SDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVL 226 (368)
T ss_dssp -TTGGGCC------------------------------CTTHHHH-HHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHH
T ss_pred -CcHHHHHHHHHH-------hh-------hhcc-cHHHHHHHHHh-hcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHH
Confidence 222222111100 00 0000 01112223333 7899999999999998853111 47788899999
Q ss_pred HhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHhhC-CCCC-CHHHHHHHHHHHhcCCCHHHH
Q 007808 406 CTHMGLVEEGLSYFQSMAMDYSIVPQIEHYGCMVDLLARAGRLAEAVDFVKRM-PIEA-DAVIWANLLGSCRVYKNVELA 483 (589)
Q Consensus 406 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A 483 (589)
+...|++++|...++++... .+.+...+..++.+|.+.|++++|++.++++ ...| +...+..+..++.+.|++++|
T Consensus 227 ~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A 304 (368)
T 1fch_A 227 FNLSGEYDKAVDCFTAALSV--RPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREA 304 (368)
T ss_dssp HHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHH
Confidence 99999999999999998763 2345778999999999999999999999987 3344 577888899999999999999
Q ss_pred HHHHHHHHccCCCC-----------CcchHHHHHHHhhcCChHHHHHHHHHh
Q 007808 484 ELALERLTELEPKN-----------PANFVMLSNIYGDLGRWKDVARIKVAM 524 (589)
Q Consensus 484 ~~~~~~~~~~~p~~-----------~~~~~~l~~~~~~~g~~~~A~~~~~~~ 524 (589)
...+++++++.|++ +.+|..++.+|...|++++|..++++.
T Consensus 305 ~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 356 (368)
T 1fch_A 305 VEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADARD 356 (368)
T ss_dssp HHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHTTC
T ss_pred HHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHhHHHH
Confidence 99999999998887 689999999999999999999987644
No 22
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.84 E-value=6.5e-18 Score=171.54 Aligned_cols=332 Identities=14% Similarity=0.049 Sum_probs=275.6
Q ss_pred CCCHHHHHHHHHhCCC-CChhHHHHHHHHHhc----CCChHHHHHHhcccCC-CChhhHHHHHHHHHh----cCCHHHHH
Q 007808 179 CGDIVSARCLFELAPE-RDVILWNTIVSGYID----VRNMIEARKLFDQMPK-KDVISWNTMLSGYAN----NGDVEECK 248 (589)
Q Consensus 179 ~g~~~~a~~~~~~~~~-~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~-~~~~~~~~l~~~~~~----~~~~~~A~ 248 (589)
.+++++|..+|+...+ .+...+..+...|.. .++.++|.+.|++..+ .+...+..+...|.. .+++++|.
T Consensus 56 ~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~ 135 (490)
T 2xm6_A 56 TKDLTQAMDWFRRAAEQGYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKGLPQAQQNLGVMYHEGNGVKVDKAESV 135 (490)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHH
T ss_pred CcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHH
Confidence 4555566555554433 266778888888888 8999999999998875 567788888888988 88999999
Q ss_pred HHHhhCCC-CCchhHHHHHHHHHh----CCChHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHh----cCChhHHHHHHH
Q 007808 249 RLFEEMPE-RNVFSWNGLIGGYAN----NGLFFEVLDAFKRMLTEGRVFPNDATIVTVLSACAR----LGALDFSKWVHV 319 (589)
Q Consensus 249 ~~~~~~~~-~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~~~~~~a~~~~~ 319 (589)
..|++..+ .+...+..|...|.. .+++++|++.|++..+.+ +...+..+...+.. .++.++|...+.
T Consensus 136 ~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~----~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~ 211 (490)
T 2xm6_A 136 KWFRLAAEQGRDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG----NVWSCNQLGYMYSRGLGVERNDAISAQWYR 211 (490)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT----CHHHHHHHHHHHHHTSSSCCCHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC----CHHHHHHHHHHHhcCCCCCcCHHHHHHHHH
Confidence 99998876 466778888888887 789999999999999876 56677778888887 899999999999
Q ss_pred HHHHcCCCCChhHHHHHHHHHHh----cCChHHHHHHHhhCCC-CCcchHHHHHHHHHh----CCChHHHHHHHHHHHHC
Q 007808 320 YAEYNGYQGNVCVGNALIDMYAK----CGIIENAVDVFNSMDT-KDLITWNTIISGLAM----HGRGAGALSLFHEMKNA 390 (589)
Q Consensus 320 ~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~-~~~~~~~~l~~~~~~----~~~~~~A~~~~~~m~~~ 390 (589)
+..+.+ +...+..+...|.. .++.++|...|++..+ .++..+..+...|.. .+++++|+.+|++..+.
T Consensus 212 ~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~ 288 (490)
T 2xm6_A 212 KSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQGNSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQ 288 (490)
T ss_dssp HHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTT
T ss_pred HHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHc
Confidence 999875 56677888888886 8899999999998764 466778888888888 89999999999999876
Q ss_pred CCCCCHhHHHHHHHHHhcc-----CcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcC---CHHHHHHHHhhCCCCC
Q 007808 391 GEMPDGITFIGILCACTHM-----GLVEEGLSYFQSMAMDYSIVPQIEHYGCMVDLLARAG---RLAEAVDFVKRMPIEA 462 (589)
Q Consensus 391 ~~~p~~~~~~~l~~~~~~~-----g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~p 462 (589)
| +...+..+...|... +++++|..+|++..+. .+...+..+...|...| ++++|++.|++.....
T Consensus 289 ~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~----~~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~~ 361 (490)
T 2xm6_A 289 G---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQ----GDATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAKG 361 (490)
T ss_dssp T---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHTT
T ss_pred C---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhc----CCHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHCC
Confidence 4 455667777888776 8999999999998753 35567788888888867 7899999999884345
Q ss_pred CHHHHHHHHHHHhc----CCCHHHHHHHHHHHHccCCCCCcchHHHHHHHhh----cCChHHHHHHHHHhhh
Q 007808 463 DAVIWANLLGSCRV----YKNVELAELALERLTELEPKNPANFVMLSNIYGD----LGRWKDVARIKVAMRD 526 (589)
Q Consensus 463 ~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~ 526 (589)
+...+..+...|.. .+++++|.+.|+++.+.+ ++.++..|+.+|.. .+++++|...+++..+
T Consensus 362 ~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~ 431 (490)
T 2xm6_A 362 EKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG--LSAAQVQLGEIYYYGLGVERDYVQAWAWFDTAST 431 (490)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHH
Confidence 77888888888888 899999999999999865 47899999999998 8999999999999973
No 23
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.84 E-value=1e-18 Score=166.61 Aligned_cols=345 Identities=11% Similarity=0.113 Sum_probs=142.2
Q ss_pred ccCChhHHHHHhhcCCCCCcccHHHHHHHHHcCCChhHHHHHHHHhhhCCCCCCcccHHHHHHHHhccCChHHHHHHHHH
Q 007808 46 QLKQMTYARKMFDKITDQNVVSWNAMFNGYAQNEFHRTVVVLFTQMKKLDAMPNCFTFPIVLKSCVKINALREGEELHCL 125 (589)
Q Consensus 46 ~~~~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~ 125 (589)
+.|++++|.+.++++..| .+|..++.++.+.|++++|++.|.+. +|..+|..++.++...|++++|+..++.
T Consensus 15 ~~~~ld~A~~fae~~~~~--~vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae~~g~~EeAi~yl~~ 86 (449)
T 1b89_A 15 HIGNLDRAYEFAERCNEP--AVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQM 86 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhCCCh--HHHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 568899999999999665 48999999999999999999999653 5778999999999999999999998887
Q ss_pred HHHhCCCCchHHHhHHHHHHHcCCChHHHHHHHccCCCCCeehHHHHHHHHHhCCCHHHHHHHHHhCCCCChhHHHHHHH
Q 007808 126 VLKNGFRANIFVGTALIELYSTGKAIEAAYKVFGEMDERNVVVWTSMINGYISCGDIVSARCLFELAPERDVILWNTIVS 205 (589)
Q Consensus 126 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~ 205 (589)
.++. .+++.+.+.|+.+|.+.|+++++.++++. |+..+|..++..|...|++++|..+|..+ ..|..++.
T Consensus 87 ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~~---pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a-----~n~~~LA~ 156 (449)
T 1b89_A 87 ARKK--ARESYVETELIFALAKTNRLAELEEFING---PNNAHIQQVGDRCYDEKMYDAAKLLYNNV-----SNFGRLAS 156 (449)
T ss_dssp ------------------------CHHHHTTTTTC---C----------------CTTTHHHHHHHT-----TCHHHHHH
T ss_pred HHHh--CccchhHHHHHHHHHHhCCHHHHHHHHcC---CcHHHHHHHHHHHHHcCCHHHHHHHHHHh-----hhHHHHHH
Confidence 7764 45578899999999999999999988864 66678888888888888888888888866 46778888
Q ss_pred HHhcCCChHHHHHHhcccCCCChhhHHHHHHHHHhcCCHHHHHHHHhhCCCCCchhHHHHHHHHHhCCChHHHHHHHHHH
Q 007808 206 GYIDVRNMIEARKLFDQMPKKDVISWNTMLSGYANNGDVEECKRLFEEMPERNVFSWNGLIGGYANNGLFFEVLDAFKRM 285 (589)
Q Consensus 206 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 285 (589)
++.+.|++++|.+.+.++ .++.+|..++.+|...|+++.|......+. .++.-...++..|.+.|++++|+.+++..
T Consensus 157 ~L~~Lg~yq~AVea~~KA--~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~-~~ad~l~~lv~~Yek~G~~eEai~lLe~a 233 (449)
T 1b89_A 157 TLVHLGEYQAAVDGARKA--NSTRTWKEVCFACVDGKEFRLAQMCGLHIV-VHADELEELINYYQDRGYFEELITMLEAA 233 (449)
T ss_dssp HHHTTTCHHHHHHHHHHH--TCHHHHHHHHHHHHHTTCHHHHHHTTTTTT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHhccHHHHHHHHHHc--CCchhHHHHHHHHHHcCcHHHHHHHHHHHH-hCHhhHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 888888888888888777 367778888888888888888876666544 33333445677777777777777777777
Q ss_pred HHcCCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHhhCCC-------
Q 007808 286 LTEGRVFPNDATIVTVLSACARLGALDFSKWVHVYAEYNGYQGNVCVGNALIDMYAKCGIIENAVDVFNSMDT------- 358 (589)
Q Consensus 286 ~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~------- 358 (589)
+... +.....|+.+.-.+++- ++ +++.+.++.|..-..
T Consensus 234 L~le--~ah~~~ftel~il~~ky-~p--------------------------------~k~~ehl~~~~~~ini~k~~~~ 278 (449)
T 1b89_A 234 LGLE--RAHMGMFTELAILYSKF-KP--------------------------------QKMREHLELFWSRVNIPKVLRA 278 (449)
T ss_dssp TTST--TCCHHHHHHHHHHHHTT-CH--------------------------------HHHHHHHHHHSTTSCHHHHHHH
T ss_pred hCCc--HHHHHHHHHHHHHHHhc-CH--------------------------------HHHHHHHHHHHHHhcCcHHHHH
Confidence 6543 22333444443333322 11 223333333332211
Q ss_pred -CCcchHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCcHH---HHHHHHHHhHHhcCCCCChHH
Q 007808 359 -KDLITWNTIISGLAMHGRGAGALSLFHEMKNAGEMPDGITFIGILCACTHMGLVE---EGLSYFQSMAMDYSIVPQIEH 434 (589)
Q Consensus 359 -~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~---~A~~~~~~~~~~~~~~~~~~~ 434 (589)
.+...|..+...|.+.++++.|... |.+. +|+...-........+..+.+ +|..++- .. .|..
T Consensus 279 ~~~~~~w~e~~~ly~~~~e~d~A~~t---m~~h--~~~a~~~~~f~~~~~kv~n~elyYkai~fyl---~~---~p~~-- 345 (449)
T 1b89_A 279 AEQAHLWAELVFLYDKYEEYDNAIIT---MMNH--PTDAWKEGQFKDIITKVANVELYYRAIQFYL---EF---KPLL-- 345 (449)
T ss_dssp HHTTTCHHHHHHHHHHTTCHHHHHHH---HHHS--TTTTCCHHHHHHHHHHCSSTHHHHHHHHHHH---HH---CGGG--
T ss_pred HHHHHHHHHHHHHHHhhchHHHHHHH---HHhC--ChhhhhhHHHHHHHhchhHHHHHHHHHHHHH---hc---CHHH--
Confidence 1456788888888888888887763 4442 333322222223333333333 3333332 21 2333
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhCC
Q 007808 435 YGCMVDLLARAGRLAEAVDFVKRMP 459 (589)
Q Consensus 435 ~~~l~~~~~~~g~~~~A~~~~~~~~ 459 (589)
.+-|+.++...=+...+..++++.+
T Consensus 346 l~~ll~~l~~~ld~~r~v~~~~~~~ 370 (449)
T 1b89_A 346 LNDLLMVLSPRLDHTRAVNYFSKVK 370 (449)
T ss_dssp HHHHHHHHGGGCCHHHHHHHHHHTT
T ss_pred HHHHHHHHHhccCcHHHHHHHHHcC
Confidence 5556666666666777777776663
No 24
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.83 E-value=7.1e-19 Score=164.66 Aligned_cols=246 Identities=13% Similarity=0.039 Sum_probs=134.6
Q ss_pred HHHhcCCHHHHHHHHhhCCCCCc----hhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHhcCChh
Q 007808 237 GYANNGDVEECKRLFEEMPERNV----FSWNGLIGGYANNGLFFEVLDAFKRMLTEGRVFPNDATIVTVLSACARLGALD 312 (589)
Q Consensus 237 ~~~~~~~~~~A~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~ 312 (589)
-....|++..|+..++.....++ .....+.++|...|++++|+..++. . -+|+..++..+...+...++.+
T Consensus 8 ~~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~---~--~~~~~~a~~~la~~~~~~~~~~ 82 (291)
T 3mkr_A 8 NAFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKP---S--SAPELQAVRMFAEYLASHSRRD 82 (291)
T ss_dssp HHHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT---T--SCHHHHHHHHHHHHHHCSTTHH
T ss_pred HHHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc---c--CChhHHHHHHHHHHHcCCCcHH
Confidence 34456777777777766554321 2334456677777777777765543 1 2455566666666666667777
Q ss_pred HHHHHHHHHHHcCC-CCChhHHHHHHHHHHhcCChHHHHHHHhhCCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHHCC
Q 007808 313 FSKWVHVYAEYNGY-QGNVCVGNALIDMYAKCGIIENAVDVFNSMDTKDLITWNTIISGLAMHGRGAGALSLFHEMKNAG 391 (589)
Q Consensus 313 ~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~ 391 (589)
.|.+.++.+...+. |.+...+..+...+...|++++|++.+++ ..+...+..++..|.+.|++++|.+.|+++.+.
T Consensus 83 ~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~--~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~- 159 (291)
T 3mkr_A 83 AIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ--GDSLECMAMTVQILLKLDRLDLARKELKKMQDQ- 159 (291)
T ss_dssp HHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT--CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh-
Confidence 77777776666553 33455555556666666666666666665 334555555666666666666666666666553
Q ss_pred CCCCHhHH---HHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCCHHHHH
Q 007808 392 EMPDGITF---IGILCACTHMGLVEEGLSYFQSMAMDYSIVPQIEHYGCMVDLLARAGRLAEAVDFVKRMPIEADAVIWA 468 (589)
Q Consensus 392 ~~p~~~~~---~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~ 468 (589)
.|+.... ..++..+...|++++|..+|+++... .+.+...++
T Consensus 160 -~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~----------------------------------~p~~~~~~~ 204 (291)
T 3mkr_A 160 -DEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADK----------------------------------CSPTLLLLN 204 (291)
T ss_dssp -CTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH----------------------------------SCCCHHHHH
T ss_pred -CcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHh----------------------------------CCCcHHHHH
Confidence 2332211 11112222334455555555444432 223444455
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHccCCCCCcchHHHHHHHhhcCChHH-HHHHHHHhh
Q 007808 469 NLLGSCRVYKNVELAELALERLTELEPKNPANFVMLSNIYGDLGRWKD-VARIKVAMR 525 (589)
Q Consensus 469 ~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~-A~~~~~~~~ 525 (589)
.+..++.+.|++++|+..++++++++|+++.++..++.++...|++++ +.++++++.
T Consensus 205 ~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~ 262 (291)
T 3mkr_A 205 GQAACHMAQGRWEAAEGVLQEALDKDSGHPETLINLVVLSQHLGKPPEVTNRYLSQLK 262 (291)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 555555555555555555555555555555555555555555555544 344555543
No 25
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.82 E-value=2.1e-19 Score=175.42 Aligned_cols=273 Identities=10% Similarity=-0.045 Sum_probs=189.6
Q ss_pred CchhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhHHHHHH
Q 007808 258 NVFSWNGLIGGYANNGLFFEVLDAFKRMLTEGRVFPNDATIVTVLSACARLGALDFSKWVHVYAEYNGYQGNVCVGNALI 337 (589)
Q Consensus 258 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 337 (589)
+...|..+...+.+.|++++|+..|+++++.. +.+...+..+..++...|++++|...++++.+.. +.+
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~-------- 132 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQD--PGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNN-------- 132 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTC--------
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCC--------
Confidence 34557777788888888888888888887764 3345566666666666666666666666665543 223
Q ss_pred HHHHhcCChHHHHHHHhhCCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCC-----------HhHHHHHHHHH
Q 007808 338 DMYAKCGIIENAVDVFNSMDTKDLITWNTIISGLAMHGRGAGALSLFHEMKNAGEMPD-----------GITFIGILCAC 406 (589)
Q Consensus 338 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~-----------~~~~~~l~~~~ 406 (589)
..+|..++.+|...|++++|+..++++.+. .|+ ...+..+...+
T Consensus 133 -----------------------~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~l~~~~ 187 (365)
T 4eqf_A 133 -----------------------LKALMALAVSYTNTSHQQDACEALKNWIKQ--NPKYKYLVKNKKGSPGLTRRMSKSP 187 (365)
T ss_dssp -----------------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CHHHHCC------------------
T ss_pred -----------------------HHHHHHHHHHHHccccHHHHHHHHHHHHHh--CccchHHHhhhccchHHHHHHHHHH
Confidence 344555555666666666666666666652 232 12233457788
Q ss_pred hccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHhhC-CCC-CCHHHHHHHHHHHhcCCCHHHHH
Q 007808 407 THMGLVEEGLSYFQSMAMDYSIVPQIEHYGCMVDLLARAGRLAEAVDFVKRM-PIE-ADAVIWANLLGSCRVYKNVELAE 484 (589)
Q Consensus 407 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~l~~~~~~~g~~~~A~ 484 (589)
...|++++|..+++++.......++...+..++..|.+.|++++|++.++++ ... .+...|..+..+|...|++++|+
T Consensus 188 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~ 267 (365)
T 4eqf_A 188 VDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAV 267 (365)
T ss_dssp -CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred hhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHH
Confidence 8999999999999999865433236888999999999999999999999987 333 46788999999999999999999
Q ss_pred HHHHHHHccCCCCCcchHHHHHHHhhcCChHHHHHHHHHhhhCCCccCCccceeeeCCeeeeeccccCCCchHHHHHHHH
Q 007808 485 LALERLTELEPKNPANFVMLSNIYGDLGRWKDVARIKVAMRDTGFKKLPGCSSIEVNEVVMLGCLSRELDRKSIVRAEAN 564 (589)
Q Consensus 485 ~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~ 564 (589)
..|++++++.|+++.++..++.+|.+.|++++|+..++++.+.. |+..-. ........+..++..|+.
T Consensus 268 ~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--~~~~~~----------~~~~~~~~~~~~~~~l~~ 335 (365)
T 4eqf_A 268 EAYTRALEIQPGFIRSRYNLGISCINLGAYREAVSNFLTALSLQ--RKSRNQ----------QQVPHPAISGNIWAALRI 335 (365)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHH--HCC----------------------CHHHHHHHH
T ss_pred HHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--cccCCC----------cccchhhhHHHHHHHHHH
Confidence 99999999999999999999999999999999999999986211 100000 000011125789999999
Q ss_pred HHHHcccCCCCcch
Q 007808 565 MIKLLPQNNHPLTF 578 (589)
Q Consensus 565 ~~~~~~~~~~~~~~ 578 (589)
++..+|+.+.+...
T Consensus 336 ~~~~~g~~~~a~~~ 349 (365)
T 4eqf_A 336 ALSLMDQPELFQAA 349 (365)
T ss_dssp HHHHHTCHHHHHHH
T ss_pred HHHHcCcHHHHHHH
Confidence 99999987655443
No 26
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.82 E-value=3.2e-19 Score=167.01 Aligned_cols=218 Identities=11% Similarity=0.054 Sum_probs=180.6
Q ss_pred HHHHHHHHHhcCChHHHHHHHhhCCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCC-HhHHHHHHHHHhccCc
Q 007808 333 GNALIDMYAKCGIIENAVDVFNSMDTKDLITWNTIISGLAMHGRGAGALSLFHEMKNAGEMPD-GITFIGILCACTHMGL 411 (589)
Q Consensus 333 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~g~ 411 (589)
...+.++|...|+++.|...++....|+..++..+...+...++.++|++.++++...+..|+ ...+..+...+...|+
T Consensus 37 ~~~l~r~yi~~g~~~~al~~~~~~~~~~~~a~~~la~~~~~~~~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~ 116 (291)
T 3mkr_A 37 DVFLYRAYLAQRKYGVVLDEIKPSSAPELQAVRMFAEYLASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQN 116 (291)
T ss_dssp HHHHHHHHHHTTCHHHHHHHSCTTSCHHHHHHHHHHHHHHCSTTHHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHCCCHHHHHHHhcccCChhHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCC
Confidence 344667788888888888877765555667788888889999999999999999998766674 4556667788999999
Q ss_pred HHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHhhC-CCCCCHHHH---HHHHHHHhcCCCHHHHHHHH
Q 007808 412 VEEGLSYFQSMAMDYSIVPQIEHYGCMVDLLARAGRLAEAVDFVKRM-PIEADAVIW---ANLLGSCRVYKNVELAELAL 487 (589)
Q Consensus 412 ~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~---~~l~~~~~~~g~~~~A~~~~ 487 (589)
+++|++.+++ +.+...+..++.+|.+.|++++|.+.++++ ...|+.... ...+..+...|++++|...|
T Consensus 117 ~~~Al~~l~~-------~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~ 189 (291)
T 3mkr_A 117 PDAALRTLHQ-------GDSLECMAMTVQILLKLDRLDLARKELKKMQDQDEDATLTQLATAWVSLAAGGEKLQDAYYIF 189 (291)
T ss_dssp HHHHHHHHTT-------CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTTHHHHHHHHH
T ss_pred HHHHHHHHhC-------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhCchHHHHHHHHH
Confidence 9999999875 467888999999999999999999999998 345654322 22334455679999999999
Q ss_pred HHHHccCCCCCcchHHHHHHHhhcCChHHHHHHHHHhhhCCCccCCccceeeeCCeeeeeccccCCCchHHHHHHHHHHH
Q 007808 488 ERLTELEPKNPANFVMLSNIYGDLGRWKDVARIKVAMRDTGFKKLPGCSSIEVNEVVMLGCLSRELDRKSIVRAEANMIK 567 (589)
Q Consensus 488 ~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~~~ 567 (589)
+++++..|+++..+..++.++.+.|++++|++.++++. +++|+++.++..++.++.
T Consensus 190 ~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al------------------------~~~p~~~~~l~~l~~~~~ 245 (291)
T 3mkr_A 190 QEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEAL------------------------DKDSGHPETLINLVVLSQ 245 (291)
T ss_dssp HHHHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH------------------------HHCTTCHHHHHHHHHHHH
T ss_pred HHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH------------------------HhCCCCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999986 789999999999999999
Q ss_pred HcccCCC-CcchHhh
Q 007808 568 LLPQNNH-PLTFIVV 581 (589)
Q Consensus 568 ~~~~~~~-~~~~~~~ 581 (589)
..|+..+ +.+++..
T Consensus 246 ~~g~~~eaa~~~~~~ 260 (291)
T 3mkr_A 246 HLGKPPEVTNRYLSQ 260 (291)
T ss_dssp HTTCCHHHHHHHHHH
T ss_pred HcCCCHHHHHHHHHH
Confidence 9999876 4456543
No 27
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.82 E-value=3.8e-18 Score=172.71 Aligned_cols=352 Identities=11% Similarity=-0.035 Sum_probs=191.9
Q ss_pred chHHHhHHHHHHHcCCChHHHHHHHccCCC------------CCeehHHHHHHHHHhCCCHHHHHHHHHhCCCCChhHHH
Q 007808 134 NIFVGTALIELYSTGKAIEAAYKVFGEMDE------------RNVVVWTSMINGYISCGDIVSARCLFELAPERDVILWN 201 (589)
Q Consensus 134 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~------------~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 201 (589)
....|+.|...+...|++++|++.|++..+ ....+|+.+...|...|++++|...+++..+
T Consensus 50 ~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~------- 122 (472)
T 4g1t_A 50 KATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKH------- 122 (472)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-------
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH-------
Confidence 356778888888888888888887765421 1223455555555555555555555443210
Q ss_pred HHHHHHhcCCChHHHHHHhcccCC----CChhhHHHHHHHHHhc--CCHHHHHHHHhhCCC--C-CchhHHHHHHH---H
Q 007808 202 TIVSGYIDVRNMIEARKLFDQMPK----KDVISWNTMLSGYANN--GDVEECKRLFEEMPE--R-NVFSWNGLIGG---Y 269 (589)
Q Consensus 202 ~l~~~~~~~g~~~~a~~~~~~~~~----~~~~~~~~l~~~~~~~--~~~~~A~~~~~~~~~--~-~~~~~~~l~~~---~ 269 (589)
+...... ....++..+..++.+. +++++|...|++..+ | +...+..+..+ +
T Consensus 123 -----------------i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l 185 (472)
T 4g1t_A 123 -----------------VCEKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRL 185 (472)
T ss_dssp -----------------HHHHSCCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHH
T ss_pred -----------------HhHhcccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh
Confidence 0000000 1122333333333322 245555555555442 2 22233333222 2
Q ss_pred HhCCChHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHH----hcCChhHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCC
Q 007808 270 ANNGLFFEVLDAFKRMLTEGRVFPNDATIVTVLSACA----RLGALDFSKWVHVYAEYNGYQGNVCVGNALIDMYAKCGI 345 (589)
Q Consensus 270 ~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~----~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 345 (589)
...++.++|++.+++.++.. +.+...+..+...+. ..++.++|...++++.... +.+..++..+...|...|+
T Consensus 186 ~~~~~~~~al~~~~~al~l~--p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~ 262 (472)
T 4g1t_A 186 DNWPPSQNAIDPLRQAIRLN--PDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDE 262 (472)
T ss_dssp HHSCCCCCTHHHHHHHHHHC--SSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTC
T ss_pred cCchHHHHHHHHHHHHhhcC--CcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCc
Confidence 33455555555555555543 122333333332222 2234555555555555543 3344455555555666666
Q ss_pred hHHHHHHHhhCCC--C-CcchHHHHHHHHHh-------------------CCChHHHHHHHHHHHHCCCCCCHhHHHHHH
Q 007808 346 IENAVDVFNSMDT--K-DLITWNTIISGLAM-------------------HGRGAGALSLFHEMKNAGEMPDGITFIGIL 403 (589)
Q Consensus 346 ~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~-------------------~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~ 403 (589)
+++|...|++..+ | +..++..+..+|.. .+.+++|...+++..+.. +.+..++..+.
T Consensus 263 ~~~A~~~~~~al~~~p~~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~lg 341 (472)
T 4g1t_A 263 PDKAIELLKKALEYIPNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEAN-DNLFRVCSILA 341 (472)
T ss_dssp HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHC-TTTCCCHHHHH
T ss_pred hHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcC-CchhhhhhhHH
Confidence 6666655555431 2 33344444433321 234677888888887742 33556788889
Q ss_pred HHHhccCcHHHHHHHHHHhHHhcCCCCChH----HHHHHHH-HHHhcCCHHHHHHHHhhC-CCCCCHHHHHHHHHHHhcC
Q 007808 404 CACTHMGLVEEGLSYFQSMAMDYSIVPQIE----HYGCMVD-LLARAGRLAEAVDFVKRM-PIEADAVIWANLLGSCRVY 477 (589)
Q Consensus 404 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~----~~~~l~~-~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~ 477 (589)
..+...|++++|...|++++.. .|+.. .+..+.. .+...|++++|++.|++. .+.|+......
T Consensus 342 ~~~~~~~~~~~A~~~~~kaL~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~~~~~-------- 410 (472)
T 4g1t_A 342 SLHALADQYEEAEYYFQKEFSK---ELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREKEK-------- 410 (472)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHS---CCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCCHHHHH--------
T ss_pred HHHHHhccHHHHHHHHHHHHhc---CCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHH--------
Confidence 9999999999999999988753 33322 2333333 235788999999999887 56676543322
Q ss_pred CCHHHHHHHHHHHHccCCCCCcchHHHHHHHhhcCChHHHHHHHHHhh
Q 007808 478 KNVELAELALERLTELEPKNPANFVMLSNIYGDLGRWKDVARIKVAMR 525 (589)
Q Consensus 478 g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 525 (589)
....+.+++++.++.+|+++.+|..|+.+|...|++++|++.|++..
T Consensus 411 -~~~~l~~~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kAL 457 (472)
T 4g1t_A 411 -MKDKLQKIAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGL 457 (472)
T ss_dssp -HHHHHHHHHHHHHHHCC-CTTHHHHHHHHHHHHHHCC----------
T ss_pred -HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 23456678888999999999999999999999999999999999986
No 28
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.81 E-value=1e-18 Score=170.43 Aligned_cols=271 Identities=13% Similarity=-0.043 Sum_probs=214.0
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHhhCCC---CCchhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCcHHHHHHHHH
Q 007808 227 DVISWNTMLSGYANNGDVEECKRLFEEMPE---RNVFSWNGLIGGYANNGLFFEVLDAFKRMLTEGRVFPNDATIVTVLS 303 (589)
Q Consensus 227 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~ 303 (589)
+...+..+...+.+.|++++|...|+++.+ .+..+|..+..+|...|++++|+..|+++.+.. +.+...+..+..
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~ 141 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQ--PNNLKALMALAV 141 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CCCHHHHHHHHH
Confidence 456688899999999999999999999875 467889999999999999999999999999975 345788999999
Q ss_pred HHHhcCChhHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHhhCCCCCcchHHHHHHHHHhCCChHHHHHH
Q 007808 304 ACARLGALDFSKWVHVYAEYNGYQGNVCVGNALIDMYAKCGIIENAVDVFNSMDTKDLITWNTIISGLAMHGRGAGALSL 383 (589)
Q Consensus 304 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 383 (589)
++...|++++|...++++.+.. +.+...+..+. .....+..+...+...|++++|+..
T Consensus 142 ~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~---------------------~~~~~~~~l~~~~~~~g~~~~A~~~ 199 (365)
T 4eqf_A 142 SYTNTSHQQDACEALKNWIKQN-PKYKYLVKNKK---------------------GSPGLTRRMSKSPVDSSVLEGVKEL 199 (365)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-HHHHCC----------------------------------------CCHHHHHHHHH
T ss_pred HHHccccHHHHHHHHHHHHHhC-ccchHHHhhhc---------------------cchHHHHHHHHHHhhhhhHHHHHHH
Confidence 9999999999999999988754 11111111110 1223455667788889999999999
Q ss_pred HHHHHHCCCC-CCHhHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHhhC-CCC
Q 007808 384 FHEMKNAGEM-PDGITFIGILCACTHMGLVEEGLSYFQSMAMDYSIVPQIEHYGCMVDLLARAGRLAEAVDFVKRM-PIE 461 (589)
Q Consensus 384 ~~~m~~~~~~-p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~ 461 (589)
++++.+.... ++..++..+...+...|++++|.+.++++.+. .+.+..+|..++.+|.+.|++++|++.++++ ...
T Consensus 200 ~~~al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 277 (365)
T 4eqf_A 200 YLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTV--RPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQ 277 (365)
T ss_dssp HHHHHHHSCSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHhCcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 9999885321 15778889999999999999999999998764 2345788999999999999999999999987 344
Q ss_pred C-CHHHHHHHHHHHhcCCCHHHHHHHHHHHHccCCC------------CCcchHHHHHHHhhcCChHHHHHHHHH
Q 007808 462 A-DAVIWANLLGSCRVYKNVELAELALERLTELEPK------------NPANFVMLSNIYGDLGRWKDVARIKVA 523 (589)
Q Consensus 462 p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~------------~~~~~~~l~~~~~~~g~~~~A~~~~~~ 523 (589)
| +...+..+..+|...|++++|...|++++++.|+ +...+..++.++...|+.+.+.++.++
T Consensus 278 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 278 PGFIRSRYNLGISCINLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp TTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 5 5788889999999999999999999999998876 367899999999999999999887665
No 29
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.81 E-value=1.4e-18 Score=165.66 Aligned_cols=379 Identities=12% Similarity=0.035 Sum_probs=162.9
Q ss_pred cCCChHHHHHHHccCCCCCeehHHHHHHHHHhCCCHHHHHHHHHhCCCCChhHHHHHHHHHhcCCChHHHHHHhcccCC-
Q 007808 147 TGKAIEAAYKVFGEMDERNVVVWTSMINGYISCGDIVSARCLFELAPERDVILWNTIVSGYIDVRNMIEARKLFDQMPK- 225 (589)
Q Consensus 147 ~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~- 225 (589)
+.|++++|.++++++..| .+|..++.++.+.|++++|++.|.+. +|..+|..++.++...|++++|+++++...+
T Consensus 15 ~~~~ld~A~~fae~~~~~--~vWs~La~A~l~~g~~~eAIdsfika--~D~~~y~~V~~~ae~~g~~EeAi~yl~~ark~ 90 (449)
T 1b89_A 15 HIGNLDRAYEFAERCNEP--AVWSQLAKAQLQKGMVKEAIDSYIKA--DDPSSYMEVVQAANTSGNWEELVKYLQMARKK 90 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhCCCh--HHHHHHHHHHHHcCCHHHHHHHHHcC--CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh
Confidence 456677777777777444 36777777777777777777777553 3555777777777777777777776665554
Q ss_pred -CChhhHHHHHHHHHhcCCHHHHHHHHhhCCCCCchhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCcHHHHHHHHHH
Q 007808 226 -KDVISWNTMLSGYANNGDVEECKRLFEEMPERNVFSWNGLIGGYANNGLFFEVLDAFKRMLTEGRVFPNDATIVTVLSA 304 (589)
Q Consensus 226 -~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~ 304 (589)
+++.+.+.++.+|.+.|+++++.++++ .|+..+|+.+...|...|++++|...|..+ ..|..++.+
T Consensus 91 ~~~~~i~~~Li~~Y~Klg~l~e~e~f~~---~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a----------~n~~~LA~~ 157 (449)
T 1b89_A 91 ARESYVETELIFALAKTNRLAELEEFIN---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV----------SNFGRLAST 157 (449)
T ss_dssp ------------------CHHHHTTTTT---CC----------------CTTTHHHHHHHT----------TCHHHHHHH
T ss_pred CccchhHHHHHHHHHHhCCHHHHHHHHc---CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh----------hhHHHHHHH
Confidence 445666777777777777777666664 356667777777777777777777777754 146677777
Q ss_pred HHhcCChhHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHhhCCCCCcchHHHHHHHHHhCCChHHHHHHH
Q 007808 305 CARLGALDFSKWVHVYAEYNGYQGNVCVGNALIDMYAKCGIIENAVDVFNSMDTKDLITWNTIISGLAMHGRGAGALSLF 384 (589)
Q Consensus 305 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 384 (589)
+.+.|+++.|.+.+.++ .++.+|..++.+|...|+++.|......+. ..+.-...++..|.+.|++++|+.++
T Consensus 158 L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~-~~ad~l~~lv~~Yek~G~~eEai~lL 230 (449)
T 1b89_A 158 LVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHIV-VHADELEELINYYQDRGYFEELITML 230 (449)
T ss_dssp HHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTTT-TCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHHH-hCHhhHHHHHHHHHHCCCHHHHHHHH
Confidence 77777777777777766 256677777777777777777766655544 33333446778888888888888888
Q ss_pred HHHHHCCCCCCHhHHHHHHHHHh--ccCcHHHHHHHHHHhHHhcCCCC------ChHHHHHHHHHHHhcCCHHHHHHHHh
Q 007808 385 HEMKNAGEMPDGITFIGILCACT--HMGLVEEGLSYFQSMAMDYSIVP------QIEHYGCMVDLLARAGRLAEAVDFVK 456 (589)
Q Consensus 385 ~~m~~~~~~p~~~~~~~l~~~~~--~~g~~~~A~~~~~~~~~~~~~~~------~~~~~~~l~~~~~~~g~~~~A~~~~~ 456 (589)
+...... +-....|+.+.-.|+ +.+++.+.++.|. .+..++| +...|..++..|...++++.|....-
T Consensus 231 e~aL~le-~ah~~~ftel~il~~ky~p~k~~ehl~~~~---~~ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~A~~tm~ 306 (449)
T 1b89_A 231 EAALGLE-RAHMGMFTELAILYSKFKPQKMREHLELFW---SRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMM 306 (449)
T ss_dssp HHHTTST-TCCHHHHHHHHHHHHTTCHHHHHHHHHHHS---TTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHhCCc-HHHHHHHHHHHHHHHhcCHHHHHHHHHHHH---HHhcCcHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHH
Confidence 8877532 224445555555554 4455555555544 2224444 46678899999999999999887665
Q ss_pred hC-CCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHccCCCCCcchHHHHHHHhhcCChHHHHHHHHHhhhCCCccCCcc
Q 007808 457 RM-PIEADAVIWANLLGSCRVYKNVELAELALERLTELEPKNPANFVMLSNIYGDLGRWKDVARIKVAMRDTGFKKLPGC 535 (589)
Q Consensus 457 ~~-~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 535 (589)
+- +..-+...|--+ ..+-.+.+--.+...--++.. |...+.|..++...=+...+...+++.-.-++-...-
T Consensus 307 ~h~~~a~~~~~f~~~---~~kv~n~elyYkai~fyl~~~---p~~l~~ll~~l~~~ld~~r~v~~~~~~~~l~l~~~yl- 379 (449)
T 1b89_A 307 NHPTDAWKEGQFKDI---ITKVANVELYYRAIQFYLEFK---PLLLNDLLMVLSPRLDHTRAVNYFSKVKQLPLVKPYL- 379 (449)
T ss_dssp HSTTTTCCHHHHHHH---HHHCSSTHHHHHHHHHHHHHC---GGGHHHHHHHHGGGCCHHHHHHHHHHTTCTTTTHHHH-
T ss_pred hCChhhhhhHHHHHH---HhchhHHHHHHHHHHHHHhcC---HHHHHHHHHHHHhccCcHHHHHHHHHcCCcHHHHHHH-
Confidence 55 233344444333 333444333333222223333 3456667777766667777777766653222111000
Q ss_pred ceeeeCCeeeeeccccCCCchHHHHHHHHHHHHcccC
Q 007808 536 SSIEVNEVVMLGCLSRELDRKSIVRAEANMIKLLPQN 572 (589)
Q Consensus 536 ~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~ 572 (589)
..+ .+-|+..+-+.|-.+|-+..+.
T Consensus 380 -----------~~v-~~~n~~~vnealn~l~ieeed~ 404 (449)
T 1b89_A 380 -----------RSV-QNHNNKSVNESLNNLFITEEDY 404 (449)
T ss_dssp -----------HHH-HTTCCHHHHHHHHHHHHHTTCH
T ss_pred -----------HHH-HHhhHHHHHHHHHHHHHhhhhH
Confidence 001 2346667777777777655444
No 30
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.81 E-value=1.8e-16 Score=162.67 Aligned_cols=412 Identities=8% Similarity=0.040 Sum_probs=277.7
Q ss_pred HHHhhhCCCCCCcccHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchHHHhHHHHHHHcCCChHHHHHHHccCCC--CC
Q 007808 88 FTQMKKLDAMPNCFTFPIVLKSCVKINALREGEELHCLVLKNGFRANIFVGTALIELYSTGKAIEAAYKVFGEMDE--RN 165 (589)
Q Consensus 88 ~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~ 165 (589)
|++..+.. +-+...|..++.. ...|++++|..+|+++++.. +.+...|..++..+.+.|++++|..+|++... |+
T Consensus 2 le~al~~~-P~~~~~w~~l~~~-~~~~~~~~a~~~~e~al~~~-P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~p~ 78 (530)
T 2ooe_A 2 AEKKLEEN-PYDLDAWSILIRE-AQNQPIDKARKTYERLVAQF-PSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKVLH 78 (530)
T ss_dssp HHHHHHHC-TTCHHHHHHHHHH-HHSSCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTCCC
T ss_pred hhhHhhhC-CCCHHHHHHHHHH-HHhCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Confidence 34444433 3356678888874 67789999999999998763 45677888888888889999999999998876 55
Q ss_pred eehHHHHHHHH-HhCCCHHHHHH----HHHhCC-----C-CChhHHHHHHHHHhc---------CCChHHHHHHhcccCC
Q 007808 166 VVVWTSMINGY-ISCGDIVSARC----LFELAP-----E-RDVILWNTIVSGYID---------VRNMIEARKLFDQMPK 225 (589)
Q Consensus 166 ~~~~~~l~~~~-~~~g~~~~a~~----~~~~~~-----~-~~~~~~~~l~~~~~~---------~g~~~~a~~~~~~~~~ 225 (589)
...|..++... ...|+.++|.+ +|+... . .+...|...+....+ .|+++.|..+|++..+
T Consensus 79 ~~lw~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~ 158 (530)
T 2ooe_A 79 IDLWKCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCV 158 (530)
T ss_dssp HHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHh
Confidence 55666666433 34566666554 454431 1 244556555554433 4666666666666654
Q ss_pred -CCh---hhHHHHHHHHHhcCCHHHHHHHHhhCCCCCchhHHHHHHHHHhCCChHHHHHHHHHH------HHcC--CCCC
Q 007808 226 -KDV---ISWNTMLSGYANNGDVEECKRLFEEMPERNVFSWNGLIGGYANNGLFFEVLDAFKRM------LTEG--RVFP 293 (589)
Q Consensus 226 -~~~---~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~------~~~~--~~~p 293 (589)
|.. ..|..........|. ..+..++. ...+++.+|..++... .+.. .++|
T Consensus 159 ~P~~~~~~~~~~~~~~e~~~~~-~~~~~~l~-----------------~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p 220 (530)
T 2ooe_A 159 NPMINIEQLWRDYNKYEEGINI-HLAKKMIE-----------------DRSRDYMNARRVAKEYETVMKGLDRNAPSVPP 220 (530)
T ss_dssp SCCTTHHHHHHHHHHHHHHHCH-HHHHHHHH-----------------TTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCC
T ss_pred chhhhHHHHHHHHHHHHHhhch-hHHHHHHH-----------------HhhHHHHHHHHHHHHHHHHHHHhccccccCCC
Confidence 221 112111111000000 00111110 1234556666666552 2211 0233
Q ss_pred c--------HHHHHHHHHHHHhc----CCh----hHHHHHHHHHHHcCCCCChhHHHHHHHHHHh-------cCChH---
Q 007808 294 N--------DATIVTVLSACARL----GAL----DFSKWVHVYAEYNGYQGNVCVGNALIDMYAK-------CGIIE--- 347 (589)
Q Consensus 294 ~--------~~~~~~l~~~~~~~----~~~----~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~g~~~--- 347 (589)
+ ...|...+...... ++. ..+...|+++.... +.+...|..++..+.+ .|+++
T Consensus 221 ~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~ 299 (530)
T 2ooe_A 221 QNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAK 299 (530)
T ss_dssp C--CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHH
T ss_pred CCChhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhhh
Confidence 3 13344443322221 222 36677888888763 5678888888888875 79987
Q ss_pred ----HHHHHHhhCCC---C-CcchHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCH--hHHHHHHHHHhccCcHHHHHH
Q 007808 348 ----NAVDVFNSMDT---K-DLITWNTIISGLAMHGRGAGALSLFHEMKNAGEMPDG--ITFIGILCACTHMGLVEEGLS 417 (589)
Q Consensus 348 ----~A~~~~~~~~~---~-~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~--~~~~~l~~~~~~~g~~~~A~~ 417 (589)
+|..+|++..+ | +...|..++..+.+.|++++|..+|+++.+ +.|+. ..|..++..+.+.|++++|.+
T Consensus 300 ~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~~~~~~~~~~~~~~~A~~ 377 (530)
T 2ooe_A 300 LFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLA--IEDIDPTLVYIQYMKFARRAEGIKSGRM 377 (530)
T ss_dssp HHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--SSSSCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhC--ccccCchHHHHHHHHHHHHhcCHHHHHH
Confidence 89999998764 3 567899999999999999999999999998 46643 478888888889999999999
Q ss_pred HHHHhHHhcCCCCC-hHHHHHHHHH-HHhcCCHHHHHHHHhhC-CCCC-CHHHHHHHHHHHhcCCCHHHHHHHHHHHHcc
Q 007808 418 YFQSMAMDYSIVPQ-IEHYGCMVDL-LARAGRLAEAVDFVKRM-PIEA-DAVIWANLLGSCRVYKNVELAELALERLTEL 493 (589)
Q Consensus 418 ~~~~~~~~~~~~~~-~~~~~~l~~~-~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 493 (589)
+|++..+. .|+ ...|...+.. +...|+.++|..+|+++ ...| +...|..++..+.+.|+.++|..+|+++++.
T Consensus 378 ~~~~Al~~---~~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~ 454 (530)
T 2ooe_A 378 IFKKARED---ARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTS 454 (530)
T ss_dssp HHHHHHTC---TTCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHS
T ss_pred HHHHHHhc---cCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhc
Confidence 99999753 333 3333332222 34689999999999987 3344 5788989999999999999999999999998
Q ss_pred CCCCCc----chHHHHHHHhhcCChHHHHHHHHHhhh
Q 007808 494 EPKNPA----NFVMLSNIYGDLGRWKDVARIKVAMRD 526 (589)
Q Consensus 494 ~p~~~~----~~~~l~~~~~~~g~~~~A~~~~~~~~~ 526 (589)
.|.++. .|...+......|+.+.+..+.+++.+
T Consensus 455 ~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~ 491 (530)
T 2ooe_A 455 GSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFT 491 (530)
T ss_dssp CCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 887665 777888888899999999999998853
No 31
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.79 E-value=3.6e-18 Score=163.69 Aligned_cols=260 Identities=10% Similarity=-0.029 Sum_probs=193.7
Q ss_pred chhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhHHHHHHH
Q 007808 259 VFSWNGLIGGYANNGLFFEVLDAFKRMLTEGRVFPNDATIVTVLSACARLGALDFSKWVHVYAEYNGYQGNVCVGNALID 338 (589)
Q Consensus 259 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 338 (589)
...+..+...+...|++++|+..|+++.+.. +.+...+..+..++...|+++.|...++.+.+.. +.+...+..
T Consensus 21 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~--- 94 (327)
T 3cv0_A 21 HENPMEEGLSMLKLANLAEAALAFEAVCQAA--PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAA--- 94 (327)
T ss_dssp SSCHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHH---
T ss_pred hHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHH---
Confidence 3456667777888888888888888887764 3355566666667777777777777777666653 333444444
Q ss_pred HHHhcCChHHHHHHHhhCCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCH-hHHHH-------------H-H
Q 007808 339 MYAKCGIIENAVDVFNSMDTKDLITWNTIISGLAMHGRGAGALSLFHEMKNAGEMPDG-ITFIG-------------I-L 403 (589)
Q Consensus 339 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~-~~~~~-------------l-~ 403 (589)
+...+...|++++|+..++++.+. .|+. ..+.. + .
T Consensus 95 ----------------------------la~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 144 (327)
T 3cv0_A 95 ----------------------------LAVSHTNEHNANAALASLRAWLLS--QPQYEQLGSVNLQADVDIDDLNVQSE 144 (327)
T ss_dssp ----------------------------HHHHHHHTTCHHHHHHHHHHHHHT--STTTTTC-------------------
T ss_pred ----------------------------HHHHHHHcCCHHHHHHHHHHHHHh--CCccHHHHHHHhHHHHHHHHHHHHHH
Confidence 444455555555555555555543 2221 11211 2 2
Q ss_pred H-HHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHhhC-CCCC-CHHHHHHHHHHHhcCCCH
Q 007808 404 C-ACTHMGLVEEGLSYFQSMAMDYSIVPQIEHYGCMVDLLARAGRLAEAVDFVKRM-PIEA-DAVIWANLLGSCRVYKNV 480 (589)
Q Consensus 404 ~-~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~ 480 (589)
. .+...|++++|..+++++... .+.+...+..++..|.+.|++++|++.++++ ...| +...+..+...+...|++
T Consensus 145 ~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 222 (327)
T 3cv0_A 145 DFFFAAPNEYRECRTLLHAALEM--NPNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRP 222 (327)
T ss_dssp -CCTTSHHHHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred hHHHHHcccHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCH
Confidence 2 377889999999999998764 2346788889999999999999999999987 3334 577888899999999999
Q ss_pred HHHHHHHHHHHccCCCCCcchHHHHHHHhhcCChHHHHHHHHHhhhCCCccCCccceeeeCCeeeeeccccCCC------
Q 007808 481 ELAELALERLTELEPKNPANFVMLSNIYGDLGRWKDVARIKVAMRDTGFKKLPGCSSIEVNEVVMLGCLSRELD------ 554 (589)
Q Consensus 481 ~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~------ 554 (589)
++|...++++++..|+++.++..++.+|.+.|++++|.+.++++. +.+|+
T Consensus 223 ~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~------------------------~~~~~~~~~~~ 278 (327)
T 3cv0_A 223 QEALDAYNRALDINPGYVRVMYNMAVSYSNMSQYDLAAKQLVRAI------------------------YMQVGGTTPTG 278 (327)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH------------------------HHHTTSCC---
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHH------------------------HhCCccccccc
Confidence 999999999999999999999999999999999999999999986 45566
Q ss_pred ------chHHHHHHHHHHHHcccCCCCcchHh
Q 007808 555 ------RKSIVRAEANMIKLLPQNNHPLTFIV 580 (589)
Q Consensus 555 ------~~~~~~~l~~~~~~~~~~~~~~~~~~ 580 (589)
++.++..++.++..+|+.++|.....
T Consensus 279 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 310 (327)
T 3cv0_A 279 EASREATRSMWDFFRMLLNVMNRPDLVELTYA 310 (327)
T ss_dssp --CCTHHHHHHHHHHHHHHHTTCHHHHHHHTT
T ss_pred cchhhcCHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 89999999999999999987766654
No 32
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.79 E-value=3e-17 Score=166.15 Aligned_cols=311 Identities=10% Similarity=-0.017 Sum_probs=205.3
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHhhCCC-------C----CchhHHHHHHHHHh--CCChHHHHHHHHHHHHcCCCCCc
Q 007808 228 VISWNTMLSGYANNGDVEECKRLFEEMPE-------R----NVFSWNGLIGGYAN--NGLFFEVLDAFKRMLTEGRVFPN 294 (589)
Q Consensus 228 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-------~----~~~~~~~l~~~~~~--~g~~~~A~~~~~~~~~~~~~~p~ 294 (589)
..+|+.+..+|...|++++|...+++..+ + ...++..+..++.. .+++++|++.|++.++.. |+
T Consensus 94 ~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~---p~ 170 (472)
T 4g1t_A 94 LVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKK---PK 170 (472)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS---TT
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhC---CC
Confidence 34566666777777777777666665432 1 23455555555544 467999999999999865 44
Q ss_pred -HHHHHHHHHH---HHhcCChhHHHHHHHHHHHcCCCCChhHHHHHHHHHHh----cCChHHHHHHHhhCC---CCCcch
Q 007808 295 -DATIVTVLSA---CARLGALDFSKWVHVYAEYNGYQGNVCVGNALIDMYAK----CGIIENAVDVFNSMD---TKDLIT 363 (589)
Q Consensus 295 -~~~~~~l~~~---~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~---~~~~~~ 363 (589)
...+..+..+ +...++.++|.+.++++.+.+ +.+..++..+...+.. .|++++|.+.+++.. ..+..+
T Consensus 171 ~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~-p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~ 249 (472)
T 4g1t_A 171 NPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLN-PDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGVTDV 249 (472)
T ss_dssp CHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHC-SSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHCSSCHHH
T ss_pred CHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcC-CcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCccHHHH
Confidence 3444444433 445678888999999988875 4456666666655544 467788999998765 346678
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHCCCCC-CHhHHHHHHHHHhcc-------------------CcHHHHHHHHHHhH
Q 007808 364 WNTIISGLAMHGRGAGALSLFHEMKNAGEMP-DGITFIGILCACTHM-------------------GLVEEGLSYFQSMA 423 (589)
Q Consensus 364 ~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~-------------------g~~~~A~~~~~~~~ 423 (589)
+..+...|...|++++|+..+++..+. .| +..++..+..+|... +.++.|...++++.
T Consensus 250 ~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~ 327 (472)
T 4g1t_A 250 LRSAAKFYRRKDEPDKAIELLKKALEY--IPNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKAD 327 (472)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCchHHHHHHHHHHHHh--CCChHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHh
Confidence 889999999999999999999999884 45 455666666555432 33567777777775
Q ss_pred HhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHhhC-CCCCCHHH----HHHHHH-HHhcCCCHHHHHHHHHHHHccCCCC
Q 007808 424 MDYSIVPQIEHYGCMVDLLARAGRLAEAVDFVKRM-PIEADAVI----WANLLG-SCRVYKNVELAELALERLTELEPKN 497 (589)
Q Consensus 424 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~----~~~l~~-~~~~~g~~~~A~~~~~~~~~~~p~~ 497 (589)
... +.+...+..+...|...|++++|++.|+++ ...|+... +..+.. .....|++++|+..|++++++.|++
T Consensus 328 ~~~--~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~ 405 (472)
T 4g1t_A 328 EAN--DNLFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKS 405 (472)
T ss_dssp HHC--TTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCC
T ss_pred hcC--CchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCccc
Confidence 432 233556777888888999999999888876 33444322 222222 2357788889999999999888874
Q ss_pred CcchHHHHHHHhhcCChHHHHHHHHHhhhCCCccCCccceeeeCCeeeeeccccCCCchHHHHHHHHHHHHcccCCCCcc
Q 007808 498 PANFVMLSNIYGDLGRWKDVARIKVAMRDTGFKKLPGCSSIEVNEVVMLGCLSRELDRKSIVRAEANMIKLLPQNNHPLT 577 (589)
Q Consensus 498 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~ 577 (589)
... .+....+.+++++. ++.+|+++.++..||.+|...|+..+|+.
T Consensus 406 ~~~----------~~~~~~l~~~~~~~------------------------l~~~p~~~~~~~~LG~~~~~~g~~~~A~~ 451 (472)
T 4g1t_A 406 REK----------EKMKDKLQKIAKMR------------------------LSKNGADSEALHVLAFLQELNEKMQQADE 451 (472)
T ss_dssp HHH----------HHHHHHHHHHHHHH------------------------HHHCC-CTTHHHHHHHHHHHHHHCC----
T ss_pred HHH----------HHHHHHHHHHHHHH------------------------HHhCCCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 321 11223334444443 37899999999999999999999999988
Q ss_pred hHh
Q 007808 578 FIV 580 (589)
Q Consensus 578 ~~~ 580 (589)
...
T Consensus 452 ~y~ 454 (472)
T 4g1t_A 452 DSE 454 (472)
T ss_dssp ---
T ss_pred HHH
Confidence 754
No 33
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.79 E-value=6.4e-18 Score=161.94 Aligned_cols=274 Identities=12% Similarity=-0.036 Sum_probs=217.6
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHhhCCC---CCchhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCcHHHHHHHHH
Q 007808 227 DVISWNTMLSGYANNGDVEECKRLFEEMPE---RNVFSWNGLIGGYANNGLFFEVLDAFKRMLTEGRVFPNDATIVTVLS 303 (589)
Q Consensus 227 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~ 303 (589)
+...+..+...+...|++++|..+|+++.+ .+..++..+..++...|++++|...++++.+.. +.+...+..+..
T Consensus 20 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~la~ 97 (327)
T 3cv0_A 20 YHENPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLD--PKDIAVHAALAV 97 (327)
T ss_dssp GSSCHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--cCCHHHHHHHHH
Confidence 445677888999999999999999999874 356788889999999999999999999999875 456778888999
Q ss_pred HHHhcCChhHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHhhCCCCCcchHHHHHH--HHHhCCChHHHH
Q 007808 304 ACARLGALDFSKWVHVYAEYNGYQGNVCVGNALIDMYAKCGIIENAVDVFNSMDTKDLITWNTIIS--GLAMHGRGAGAL 381 (589)
Q Consensus 304 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~A~ 381 (589)
.+...|++++|...+..+.+... .+...+..+.... ++......+.. .+...|++++|.
T Consensus 98 ~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~A~ 158 (327)
T 3cv0_A 98 SHTNEHNANAALASLRAWLLSQP-QYEQLGSVNLQAD------------------VDIDDLNVQSEDFFFAAPNEYRECR 158 (327)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTST-TTTTC--------------------------------------CCTTSHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCC-ccHHHHHHHhHHH------------------HHHHHHHHHHHhHHHHHcccHHHHH
Confidence 99999999999999999988642 2222222221110 01111112212 366778899999
Q ss_pred HHHHHHHHCCCCCCHhHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHhhC-CC
Q 007808 382 SLFHEMKNAGEMPDGITFIGILCACTHMGLVEEGLSYFQSMAMDYSIVPQIEHYGCMVDLLARAGRLAEAVDFVKRM-PI 460 (589)
Q Consensus 382 ~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~ 460 (589)
..++++.+.. +.+...+..+...+...|++++|...++++... .+.+...+..++..|...|++++|++.++++ ..
T Consensus 159 ~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 235 (327)
T 3cv0_A 159 TLLHAALEMN-PNDAQLHASLGVLYNLSNNYDSAAANLRRAVEL--RPDDAQLWNKLGATLANGNRPQEALDAYNRALDI 235 (327)
T ss_dssp HHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 9999998853 346778888999999999999999999998763 2345778899999999999999999999987 33
Q ss_pred CC-CHHHHHHHHHHHhcCCCHHHHHHHHHHHHccCCC------------CCcchHHHHHHHhhcCChHHHHHHHHHh
Q 007808 461 EA-DAVIWANLLGSCRVYKNVELAELALERLTELEPK------------NPANFVMLSNIYGDLGRWKDVARIKVAM 524 (589)
Q Consensus 461 ~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~------------~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 524 (589)
.| +...+..+...+...|++++|.+.+++++++.|+ ++..+..++.++.+.|++++|..++++.
T Consensus 236 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 312 (327)
T 3cv0_A 236 NPGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQN 312 (327)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCC
T ss_pred CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 34 5778888999999999999999999999999998 6889999999999999999999998765
No 34
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.78 E-value=3.6e-16 Score=160.35 Aligned_cols=405 Identities=12% Similarity=0.073 Sum_probs=285.7
Q ss_pred CcccHHHHHHHHHcCCChhHHHHHHHHhhhCCCCCCcccHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchHHHhHHHH
Q 007808 64 NVVSWNAMFNGYAQNEFHRTVVVLFTQMKKLDAMPNCFTFPIVLKSCVKINALREGEELHCLVLKNGFRANIFVGTALIE 143 (589)
Q Consensus 64 ~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 143 (589)
+...|..++. +.+.|++++|..+|+++.+.. +.+...|...+..+.+.|++++|.++|+++++.. |+...|...+.
T Consensus 12 ~~~~w~~l~~-~~~~~~~~~a~~~~e~al~~~-P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~--p~~~lw~~~~~ 87 (530)
T 2ooe_A 12 DLDAWSILIR-EAQNQPIDKARKTYERLVAQF-PSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKV--LHIDLWKCYLS 87 (530)
T ss_dssp CHHHHHHHHH-HHHSSCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTC--CCHHHHHHHHH
T ss_pred CHHHHHHHHH-HHHhCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--CChHHHHHHHH
Confidence 5678998898 478999999999999998763 4456689999999999999999999999998864 57667776664
Q ss_pred HH-HcCCChHHHHH----HHccCC-----C-CCeehHHHHHHHHHh---------CCCHHHHHHHHHhCCCC-Ch---hH
Q 007808 144 LY-STGKAIEAAYK----VFGEMD-----E-RNVVVWTSMINGYIS---------CGDIVSARCLFELAPER-DV---IL 199 (589)
Q Consensus 144 ~~-~~~g~~~~A~~----~~~~~~-----~-~~~~~~~~l~~~~~~---------~g~~~~a~~~~~~~~~~-~~---~~ 199 (589)
.. ...|+.++|.+ +|+... . .+...|...+....+ .|+++.|..+|++..+. +. ..
T Consensus 88 ~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P~~~~~~~ 167 (530)
T 2ooe_A 88 YVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMINIEQL 167 (530)
T ss_dssp HHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTSCCTTHHHH
T ss_pred HHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhchhhhHHHH
Confidence 33 34677777665 665542 1 345678888777665 78999999999987652 21 23
Q ss_pred HHHHHHHHhcCCChHHHHHHhcccCCCChhhHHHHHHHHHhcCCHHHHHHHHhh----------CC---CCC--------
Q 007808 200 WNTIVSGYIDVRNMIEARKLFDQMPKKDVISWNTMLSGYANNGDVEECKRLFEE----------MP---ERN-------- 258 (589)
Q Consensus 200 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~----------~~---~~~-------- 258 (589)
|..........|. ..+..++.. +.++++.|..++.. .. .|+
T Consensus 168 ~~~~~~~e~~~~~-~~~~~~l~~-----------------~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~ 229 (530)
T 2ooe_A 168 WRDYNKYEEGINI-HLAKKMIED-----------------RSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQ 229 (530)
T ss_dssp HHHHHHHHHHHCH-HHHHHHHHT-----------------THHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHH
T ss_pred HHHHHHHHHhhch-hHHHHHHHH-----------------hhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHH
Confidence 3322221111111 111111111 12334444443332 11 111
Q ss_pred chhHHHHHHHHHhC----CCh----HHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHh-------cCChh-------HHHH
Q 007808 259 VFSWNGLIGGYANN----GLF----FEVLDAFKRMLTEGRVFPNDATIVTVLSACAR-------LGALD-------FSKW 316 (589)
Q Consensus 259 ~~~~~~l~~~~~~~----g~~----~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~-------~~~~~-------~a~~ 316 (589)
...|...+...... ++. .+++.+|++++... +.+...|...+..+.+ .|+++ .|..
T Consensus 230 ~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~--p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~ 307 (530)
T 2ooe_A 230 VDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVL--GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAAN 307 (530)
T ss_dssp HHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHH
Confidence 13455444332222 233 47888999998864 3456677777777765 68887 8999
Q ss_pred HHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHhhCCC--C-Cc-chHHHHHHHHHhCCChHHHHHHHHHHHHCCC
Q 007808 317 VHVYAEYNGYQGNVCVGNALIDMYAKCGIIENAVDVFNSMDT--K-DL-ITWNTIISGLAMHGRGAGALSLFHEMKNAGE 392 (589)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~-~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~ 392 (589)
+++++.+.-.|.+...+..++..+.+.|++++|..+|+++.+ | +. ..|..++..+.+.|++++|..+|++..+.
T Consensus 308 ~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~-- 385 (530)
T 2ooe_A 308 IYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARED-- 385 (530)
T ss_dssp HHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC--
T ss_pred HHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--
Confidence 999988633456788999999999999999999999998763 3 32 47888888889999999999999999974
Q ss_pred CC-CHhHHHHHHHH-HhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHhhC----CCCCC--H
Q 007808 393 MP-DGITFIGILCA-CTHMGLVEEGLSYFQSMAMDYSIVPQIEHYGCMVDLLARAGRLAEAVDFVKRM----PIEAD--A 464 (589)
Q Consensus 393 ~p-~~~~~~~l~~~-~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~p~--~ 464 (589)
.| +...|...+.. +...|++++|..+|++.++.. +.++..|..++..+.+.|+.++|..+|+++ +..|+ .
T Consensus 386 ~~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~--p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~ 463 (530)
T 2ooe_A 386 ARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY--GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSG 463 (530)
T ss_dssp TTCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHH--TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCH
T ss_pred cCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHC--CCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHH
Confidence 33 33333333222 346899999999999998753 345788999999999999999999999987 22332 4
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHccCCC
Q 007808 465 VIWANLLGSCRVYKNVELAELALERLTELEPK 496 (589)
Q Consensus 465 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 496 (589)
..|...+......|+.+.+..+++++.+..|+
T Consensus 464 ~lw~~~~~~e~~~G~~~~~~~~~~r~~~~~p~ 495 (530)
T 2ooe_A 464 EIWARFLAFESNIGDLASILKVEKRRFTAFRE 495 (530)
T ss_dssp HHHHHHHHHHHHSSCHHHHHHHHHHHHHHTHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCch
Confidence 57888888888899999999999999998885
No 35
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.75 E-value=8.6e-17 Score=148.27 Aligned_cols=232 Identities=11% Similarity=-0.023 Sum_probs=178.6
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHhhCCC--C-C-------cchHHH
Q 007808 297 TIVTVLSACARLGALDFSKWVHVYAEYNGYQGNVCVGNALIDMYAKCGIIENAVDVFNSMDT--K-D-------LITWNT 366 (589)
Q Consensus 297 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~-------~~~~~~ 366 (589)
.+..+...+...|++++|...+..+.+.. .+...+..+..++...|++++|.+.+++..+ | + ...|..
T Consensus 7 ~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~ 84 (258)
T 3uq3_A 7 KEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFAR 84 (258)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHH
Confidence 44445555555555555555555555554 4455556666666666666666666665442 1 1 467778
Q ss_pred HHHHHHhCCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcC
Q 007808 367 IISGLAMHGRGAGALSLFHEMKNAGEMPDGITFIGILCACTHMGLVEEGLSYFQSMAMDYSIVPQIEHYGCMVDLLARAG 446 (589)
Q Consensus 367 l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 446 (589)
+...+...|++++|+..|+++.+. .|+. ..+...|++++|...++++... .+.+...+..++..+...|
T Consensus 85 l~~~~~~~~~~~~A~~~~~~a~~~--~~~~-------~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~ 153 (258)
T 3uq3_A 85 IGNAYHKLGDLKKTIEYYQKSLTE--HRTA-------DILTKLRNAEKELKKAEAEAYV--NPEKAEEARLEGKEYFTKS 153 (258)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH--CCCH-------HHHHHHHHHHHHHHHHHHHHHC--CHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHcccHHHHHHHHHHHHhc--Cchh-------HHHHHHhHHHHHHHHHHHHHHc--CcchHHHHHHHHHHHHHhc
Confidence 888899999999999999998884 4553 3456678899999999988652 2234667888999999999
Q ss_pred CHHHHHHHHhhC-CC-CCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHccCCCCCcchHHHHHHHhhcCChHHHHHHHHHh
Q 007808 447 RLAEAVDFVKRM-PI-EADAVIWANLLGSCRVYKNVELAELALERLTELEPKNPANFVMLSNIYGDLGRWKDVARIKVAM 524 (589)
Q Consensus 447 ~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 524 (589)
++++|++.++++ .. +.+...+..+..++...|++++|...++++++.+|+++..+..++.+|.+.|++++|.+.++++
T Consensus 154 ~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 233 (258)
T 3uq3_A 154 DWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAA 233 (258)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 999999999988 33 3467888889999999999999999999999999999999999999999999999999999998
Q ss_pred hhCCCccCCccceeeeCCeeeeeccccC------CCchHHHHHHHHH
Q 007808 525 RDTGFKKLPGCSSIEVNEVVMLGCLSRE------LDRKSIVRAEANM 565 (589)
Q Consensus 525 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~------p~~~~~~~~l~~~ 565 (589)
. +++ |++..+...++.+
T Consensus 234 ~------------------------~~~~~~~~~p~~~~~~~~l~~~ 256 (258)
T 3uq3_A 234 R------------------------TKDAEVNNGSSAREIDQLYYKA 256 (258)
T ss_dssp H------------------------HHHHHHHTTTTHHHHHHHHHHT
T ss_pred H------------------------HhChhhcCCCchHHHHHHHHHh
Confidence 6 455 8999988888765
No 36
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.75 E-value=3.9e-17 Score=146.03 Aligned_cols=195 Identities=16% Similarity=0.127 Sum_probs=128.3
Q ss_pred CcchHHHHHHHHHhCCChHHHHHHHHHHHHCCCCC-CHhHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHH
Q 007808 360 DLITWNTIISGLAMHGRGAGALSLFHEMKNAGEMP-DGITFIGILCACTHMGLVEEGLSYFQSMAMDYSIVPQIEHYGCM 438 (589)
Q Consensus 360 ~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l 438 (589)
+...+..+...+.+.|++++|+..|++..+. .| +...+..+..++.+.|++++|+..++++++. .+.+...+..+
T Consensus 4 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~l 79 (217)
T 2pl2_A 4 AEQNPLRLGVQLYALGRYDAALTLFERALKE--NPQDPEALYWLARTQLKLGLVNPALENGKTLVAR--TPRYLGGYMVL 79 (217)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--SSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHH
Confidence 4455666666677777777777777777663 33 4556666667777777777777777776542 12235566667
Q ss_pred HHHHHhc-----------CCHHHHHHHHhhC-CCCC-CHHHHHHHHHHHhcCCCHHHHHHHHHHHHccCCCCCcchHHHH
Q 007808 439 VDLLARA-----------GRLAEAVDFVKRM-PIEA-DAVIWANLLGSCRVYKNVELAELALERLTELEPKNPANFVMLS 505 (589)
Q Consensus 439 ~~~~~~~-----------g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~ 505 (589)
..+|.+. |++++|+..+++. ...| +...+..+..++...|++++|+..|+++++++ +++..+..++
T Consensus 80 g~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~la 158 (217)
T 2pl2_A 80 SEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALALE-DTPEIRSALA 158 (217)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCHHHHHHHH
T ss_pred HHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc-cchHHHHHHH
Confidence 7777777 7788888777776 3344 45666777777778888888888888888877 7777888888
Q ss_pred HHHhhcCChHHHHHHHHHhhhCCCccCCccceeeeCCeeeeeccccCCCchHHHHHHHHHHHHcccCCCCcchHhhhh
Q 007808 506 NIYGDLGRWKDVARIKVAMRDTGFKKLPGCSSIEVNEVVMLGCLSRELDRKSIVRAEANMIKLLPQNNHPLTFIVVIF 583 (589)
Q Consensus 506 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 583 (589)
.+|...|++++|+..++++. +++|+++.++..++.++..+|+.++|+......+
T Consensus 159 ~~~~~~g~~~~A~~~~~~al------------------------~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 159 ELYLSMGRLDEALAQYAKAL------------------------EQAPKDLDLRVRYASALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp HHHHHHTCHHHHHHHHHHHH------------------------HHSTTCHHHHHHHHHHHTC---------------
T ss_pred HHHHHcCCHHHHHHHHHHHH------------------------HhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 88888888888888887775 6778888888888888888888877777665443
No 37
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.70 E-value=3.5e-16 Score=139.82 Aligned_cols=195 Identities=15% Similarity=0.002 Sum_probs=155.1
Q ss_pred CCChhHHHHHHHHHHhcCChHHHHHHHhhCCC---CCcchHHHHHHHHHhCCChHHHHHHHHHHHHCCCCC-CHhHHHHH
Q 007808 327 QGNVCVGNALIDMYAKCGIIENAVDVFNSMDT---KDLITWNTIISGLAMHGRGAGALSLFHEMKNAGEMP-DGITFIGI 402 (589)
Q Consensus 327 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p-~~~~~~~l 402 (589)
|++...+..+...+.+.|++++|...|++..+ .+...+..+..++.+.|++++|+..+++..+. .| +...+..+
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~l 79 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVAR--TPRYLGGYMVL 79 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHH
Confidence 56677788888888999999999999987653 35678888899999999999999999999885 45 56778888
Q ss_pred HHHHhcc-----------CcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHhhC-CCCCCHHHHHHH
Q 007808 403 LCACTHM-----------GLVEEGLSYFQSMAMDYSIVPQIEHYGCMVDLLARAGRLAEAVDFVKRM-PIEADAVIWANL 470 (589)
Q Consensus 403 ~~~~~~~-----------g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l 470 (589)
..++... |++++|+..+++.++. .+.+...+..+..+|...|++++|+..|+++ ....+...+..+
T Consensus 80 g~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~l 157 (217)
T 2pl2_A 80 SEAYVALYRQAEDRERGKGYLEQALSVLKDAERV--NPRYAPLHLQRGLVYALLGERDKAEASLKQALALEDTPEIRSAL 157 (217)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHH
T ss_pred HHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHHH
Confidence 8899999 9999999999999753 2234778889999999999999999999987 222778889999
Q ss_pred HHHHhcCCCHHHHHHHHHHHHccCCCCCcchHHHHHHHhhcCChHHHHHHHHHhh
Q 007808 471 LGSCRVYKNVELAELALERLTELEPKNPANFVMLSNIYGDLGRWKDVARIKVAMR 525 (589)
Q Consensus 471 ~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 525 (589)
..++...|++++|+..|+++++++|+++.++..++.++.+.|++++|++.+++..
T Consensus 158 a~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 158 AELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC---------------
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999999999988763
No 38
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.69 E-value=1.2e-15 Score=141.80 Aligned_cols=240 Identities=8% Similarity=-0.065 Sum_probs=162.9
Q ss_pred HHHhcCChhHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHhhCCC--CCc----chHHHHHHHHHhCCCh
Q 007808 304 ACARLGALDFSKWVHVYAEYNGYQGNVCVGNALIDMYAKCGIIENAVDVFNSMDT--KDL----ITWNTIISGLAMHGRG 377 (589)
Q Consensus 304 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~----~~~~~l~~~~~~~~~~ 377 (589)
.+...|+++.|...+..+.+.. +.+...+..+..+|...|++++|...|++..+ ++. ..|..+...+...|++
T Consensus 12 ~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~~~~~~~ 90 (272)
T 3u4t_A 12 FLFKNNNYAEAIEVFNKLEAKK-YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKILMKKGQD 90 (272)
T ss_dssp HHHTTTCHHHHHHHHHHHHHTT-CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHHHHTTCH
T ss_pred HHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHcccH
Confidence 3334444444444444443332 22333444555555555666666555554432 122 2367778888888888
Q ss_pred HHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHhh
Q 007808 378 AGALSLFHEMKNAGEMPDGITFIGILCACTHMGLVEEGLSYFQSMAMDYSIVPQIEHYGCMVDLLARAGRLAEAVDFVKR 457 (589)
Q Consensus 378 ~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 457 (589)
++|+..|++..+.. +.+...+..+...+...|++++|...++++... .+.+...+..+...+...+++++|++.+++
T Consensus 91 ~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 167 (272)
T 3u4t_A 91 SLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRP--TTTDPKVFYELGQAYYYNKEYVKADSSFVK 167 (272)
T ss_dssp HHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCS--SCCCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhc--CCCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888888742 335577888888899999999999999888642 233466777777344445699999999988
Q ss_pred C-CCCC-CHHHHHHHHHHHhcCCC---HHHHHHHHHHHHccC---CCC-----CcchHHHHHHHhhcCChHHHHHHHHHh
Q 007808 458 M-PIEA-DAVIWANLLGSCRVYKN---VELAELALERLTELE---PKN-----PANFVMLSNIYGDLGRWKDVARIKVAM 524 (589)
Q Consensus 458 ~-~~~p-~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~---p~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~ 524 (589)
+ ...| +...+..+..++...|+ +++|...+++++++. |+. ..++..++.+|...|++++|.+.++++
T Consensus 168 a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a 247 (272)
T 3u4t_A 168 VLELKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNI 247 (272)
T ss_dssp HHHHSTTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHhCccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 7 3344 46667777777777777 888999999999865 442 257888999999999999999999998
Q ss_pred hhCCCccCCccceeeeCCeeeeeccccCCCchHHHHHHHHHHHHccc
Q 007808 525 RDTGFKKLPGCSSIEVNEVVMLGCLSRELDRKSIVRAEANMIKLLPQ 571 (589)
Q Consensus 525 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 571 (589)
. +++|+++.+...++.+....+.
T Consensus 248 l------------------------~~~p~~~~a~~~l~~~~~~~~~ 270 (272)
T 3u4t_A 248 L------------------------ALDPTNKKAIDGLKMKLEHHHH 270 (272)
T ss_dssp H------------------------HHCTTCHHHHHHHC--------
T ss_pred H------------------------hcCccHHHHHHHhhhhhccccc
Confidence 6 7899999999999988765543
No 39
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.68 E-value=1.4e-15 Score=151.99 Aligned_cols=337 Identities=10% Similarity=-0.006 Sum_probs=150.3
Q ss_pred HHHHHHhCCCHHHHHHHHHhCCCC-ChhHHHHHHHHHhcCCCh---HHHHHHhcccCCCChhhHHHHHHHHHhcC-----
Q 007808 172 MINGYISCGDIVSARCLFELAPER-DVILWNTIVSGYIDVRNM---IEARKLFDQMPKKDVISWNTMLSGYANNG----- 242 (589)
Q Consensus 172 l~~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~l~~~~~~~g~~---~~a~~~~~~~~~~~~~~~~~l~~~~~~~~----- 242 (589)
+...+.+.|++++|.++|+...++ +...+..+...+...|+. ++|...|++..+.+...+..+...+...+
T Consensus 9 la~~~~~~g~~~~A~~~~~~aa~~g~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~~~~A~~~Lg~~~~~~~~~~~~ 88 (452)
T 3e4b_A 9 LANEALKRGDTVTAQQNYQQLAELGYSEAQVGLADIQVGTRDPAQIKQAEATYRAAADTSPRAQARLGRLLAAKPGATEA 88 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTCCTGGGTCC----------------------------CHHHHHHHHHTC--CCHH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCCCc
Confidence 455566667777777777655432 334444455555555555 56666666555444444555555343333
Q ss_pred CHHHHHHHHhhCCCC-CchhHHHHHHHHHhCCCh---HHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHhcCChhHHHHHH
Q 007808 243 DVEECKRLFEEMPER-NVFSWNGLIGGYANNGLF---FEVLDAFKRMLTEGRVFPNDATIVTVLSACARLGALDFSKWVH 318 (589)
Q Consensus 243 ~~~~A~~~~~~~~~~-~~~~~~~l~~~~~~~g~~---~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~ 318 (589)
+.++|...|++..++ +...+..|...|...+.. .++.+.+......| +......+...+...+.++.+....
T Consensus 89 ~~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g----~~~a~~~Lg~~y~~~~~~~~~~~~a 164 (452)
T 3e4b_A 89 EHHEAESLLKKAFANGEGNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG----YPEAGLAQVLLYRTQGTYDQHLDDV 164 (452)
T ss_dssp HHHHHHHHHHHHHHTTCSSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT----CTTHHHHHHHHHHHHTCGGGGHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC----CHHHHHHHHHHHHcCCCcccCHHHH
Confidence 455566666555442 334555555555554432 22333444443333 1223334444444444443333332
Q ss_pred HHHHHcCCCCChhHHHHHHHHHHhcC---ChHHHHHHHhhCCCC---CcchHHHHHHHHHhC----CChHHHHHHHHHHH
Q 007808 319 VYAEYNGYQGNVCVGNALIDMYAKCG---IIENAVDVFNSMDTK---DLITWNTIISGLAMH----GRGAGALSLFHEMK 388 (589)
Q Consensus 319 ~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~----~~~~~A~~~~~~m~ 388 (589)
....+.-...++..+..|...|...| +.++|++.|++..+. +...+..+...|... +++++|+.+|++..
T Consensus 165 ~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa 244 (452)
T 3e4b_A 165 ERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA 244 (452)
T ss_dssp HHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc
Confidence 22222212222335555555555555 555566555554322 112224444444333 45556666665554
Q ss_pred HCCCCCCHhHHHHHHHH-H--hccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcC-----CHHHHHHHHhhCCC
Q 007808 389 NAGEMPDGITFIGILCA-C--THMGLVEEGLSYFQSMAMDYSIVPQIEHYGCMVDLLARAG-----RLAEAVDFVKRMPI 460 (589)
Q Consensus 389 ~~~~~p~~~~~~~l~~~-~--~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-----~~~~A~~~~~~~~~ 460 (589)
.| +...+..+... + ...+++++|.++|++.... -+...+..|...|. .| ++++|++.|++..
T Consensus 245 -~g---~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~----g~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa- 314 (452)
T 3e4b_A 245 -PG---YPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAA----DQPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV- 314 (452)
T ss_dssp -GG---STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHT----TCHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT-
T ss_pred -CC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHC----CCHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh-
Confidence 21 33334444443 2 3455666666666555432 14444555555554 33 5666666666555
Q ss_pred CCCHHHHHHHHHHHhc----CCCHHHHHHHHHHHHccCCCCCcchHHHHHHHhh----cCChHHHHHHHHHh
Q 007808 461 EADAVIWANLLGSCRV----YKNVELAELALERLTELEPKNPANFVMLSNIYGD----LGRWKDVARIKVAM 524 (589)
Q Consensus 461 ~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~ 524 (589)
..+......+...|.. ..++++|...|+++.+. .++.+...|+.+|.. ..+.++|..++++.
T Consensus 315 ~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~--g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A 384 (452)
T 3e4b_A 315 GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARN--GQNSADFAIAQLFSQGKGTKPDPLNAYVFSQLA 384 (452)
T ss_dssp TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTT--TCTTHHHHHHHHHHSCTTBCCCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhh--ChHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHH
Confidence 4445555555544443 23566666666665542 234555566666553 23555666665555
No 40
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.68 E-value=3.8e-16 Score=142.52 Aligned_cols=216 Identities=12% Similarity=0.084 Sum_probs=163.0
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHhhCCC---CCcchHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHhHHHHHHHH
Q 007808 329 NVCVGNALIDMYAKCGIIENAVDVFNSMDT---KDLITWNTIISGLAMHGRGAGALSLFHEMKNAGEMPDGITFIGILCA 405 (589)
Q Consensus 329 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~ 405 (589)
....+..+...+...|++++|...|+++.+ .+...+..+...+...|++++|+..++++.+.. +.+...+..+...
T Consensus 22 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~ 100 (243)
T 2q7f_A 22 ASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAGNV 100 (243)
T ss_dssp --------------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHHHH
Confidence 445566677778888888888888887653 356678888888999999999999999988752 3367788888899
Q ss_pred HhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHhhC-CC-CCCHHHHHHHHHHHhcCCCHHHH
Q 007808 406 CTHMGLVEEGLSYFQSMAMDYSIVPQIEHYGCMVDLLARAGRLAEAVDFVKRM-PI-EADAVIWANLLGSCRVYKNVELA 483 (589)
Q Consensus 406 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~~~g~~~~A 483 (589)
+...|++++|.+.++++.+. .+.+...+..++..|.+.|++++|++.++++ .. +.+...+..+...+...|++++|
T Consensus 101 ~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 178 (243)
T 2q7f_A 101 YVVKEMYKEAKDMFEKALRA--GMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDEA 178 (243)
T ss_dssp HHHTTCHHHHHHHHHHHHHH--TCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHH
T ss_pred HHHhccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcCCHHHH
Confidence 99999999999999998764 2346778888999999999999999999987 33 34677888888999999999999
Q ss_pred HHHHHHHHccCCCCCcchHHHHHHHhhcCChHHHHHHHHHhhhCCCccCCccceeeeCCeeeeeccccCCCchHHHHHHH
Q 007808 484 ELALERLTELEPKNPANFVMLSNIYGDLGRWKDVARIKVAMRDTGFKKLPGCSSIEVNEVVMLGCLSRELDRKSIVRAEA 563 (589)
Q Consensus 484 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~ 563 (589)
...++++++..|+++.++..++.+|...|++++|.+.++++. +++|+++.++..++
T Consensus 179 ~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~------------------------~~~p~~~~~~~~~~ 234 (243)
T 2q7f_A 179 LSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAI------------------------DIQPDHMLALHAKK 234 (243)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHH------------------------HHCTTCHHHHHHHT
T ss_pred HHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHH------------------------ccCcchHHHHHHHH
Confidence 999999999999999999999999999999999999999986 78899999999988
Q ss_pred HHHHHccc
Q 007808 564 NMIKLLPQ 571 (589)
Q Consensus 564 ~~~~~~~~ 571 (589)
.+....|.
T Consensus 235 ~l~~~~~~ 242 (243)
T 2q7f_A 235 LLGHHHHH 242 (243)
T ss_dssp C-------
T ss_pred HHHhhccC
Confidence 88765543
No 41
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.68 E-value=2.4e-15 Score=140.02 Aligned_cols=243 Identities=10% Similarity=-0.090 Sum_probs=191.2
Q ss_pred HhCCChHHHHHHHHHHHHcCCCC--CcHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChH
Q 007808 270 ANNGLFFEVLDAFKRMLTEGRVF--PNDATIVTVLSACARLGALDFSKWVHVYAEYNGYQGNVCVGNALIDMYAKCGIIE 347 (589)
Q Consensus 270 ~~~g~~~~A~~~~~~~~~~~~~~--p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 347 (589)
...|++++|+..|+++.+..+.. .+...+..+...+...|++++|...+..+.+.. +.+...+..+...|...|+++
T Consensus 16 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~ 94 (275)
T 1xnf_A 16 QPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFD 94 (275)
T ss_dssp CCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHH
T ss_pred CccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHH
Confidence 34578899999999988864111 235677788888899999999999999988875 557788888999999999999
Q ss_pred HHHHHHhhCC---CCCcchHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCcHHHHHHHHHHhHH
Q 007808 348 NAVDVFNSMD---TKDLITWNTIISGLAMHGRGAGALSLFHEMKNAGEMPDGITFIGILCACTHMGLVEEGLSYFQSMAM 424 (589)
Q Consensus 348 ~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 424 (589)
+|.+.|+++. +.+...+..+..+|...|++++|+..++++.+. .|+.......+..+...|++++|...+++...
T Consensus 95 ~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 172 (275)
T 1xnf_A 95 AAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD--DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFE 172 (275)
T ss_dssp HHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence 9999998876 336778999999999999999999999999984 56555555555566777999999999988866
Q ss_pred hcCCCCChHHHHHHHHHHHhcCCHHHHHHHHhhC-CCCCC-----HHHHHHHHHHHhcCCCHHHHHHHHHHHHccCCCCC
Q 007808 425 DYSIVPQIEHYGCMVDLLARAGRLAEAVDFVKRM-PIEAD-----AVIWANLLGSCRVYKNVELAELALERLTELEPKNP 498 (589)
Q Consensus 425 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~ 498 (589)
.. +++...+. ++..+...++.++|++.++++ ...|+ ...+..+...+...|++++|...|+++++++|++.
T Consensus 173 ~~--~~~~~~~~-~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 249 (275)
T 1xnf_A 173 KS--DKEQWGWN-IVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNF 249 (275)
T ss_dssp HS--CCCSTHHH-HHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTC
T ss_pred cC--CcchHHHH-HHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCchhH
Confidence 42 34444444 677788889999999999887 33332 46778888999999999999999999999999764
Q ss_pred cchHHHHHHHhhcCChHHHHHHH
Q 007808 499 ANFVMLSNIYGDLGRWKDVARIK 521 (589)
Q Consensus 499 ~~~~~l~~~~~~~g~~~~A~~~~ 521 (589)
...+.++...|++++|++.+
T Consensus 250 ---~~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 250 ---VEHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp ---HHHHHHHHHHHHHHHC----
T ss_pred ---HHHHHHHHHHHHHHhhHHHH
Confidence 44577888999999998876
No 42
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.68 E-value=2.2e-15 Score=145.64 Aligned_cols=244 Identities=11% Similarity=0.093 Sum_probs=178.5
Q ss_pred hhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhHHHHHHHH
Q 007808 260 FSWNGLIGGYANNGLFFEVLDAFKRMLTEGRVFPNDATIVTVLSACARLGALDFSKWVHVYAEYNGYQGNVCVGNALIDM 339 (589)
Q Consensus 260 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 339 (589)
..|..+...+...|++++|++.++++++.. | .+...|+.+..+
T Consensus 98 ~a~~~lg~~~~~~g~~~~Al~~~~~al~l~---P----------------------------------~~~~a~~~~g~~ 140 (382)
T 2h6f_A 98 DVYDYFRAVLQRDERSERAFKLTRDAIELN---A----------------------------------ANYTVWHFRRVL 140 (382)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHHHHHHHHC---T----------------------------------TCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCChHHHHHHHHHHHHhC---c----------------------------------cCHHHHHHHHHH
Confidence 345555566666666666666666666543 2 234444445555
Q ss_pred HHhcCC-hHHHHHHHhhCC---CCCcchHHHHHHHHHhCCChHHHHHHHHHHHHCCCCC-CHhHHHHHHHHHhccCcHHH
Q 007808 340 YAKCGI-IENAVDVFNSMD---TKDLITWNTIISGLAMHGRGAGALSLFHEMKNAGEMP-DGITFIGILCACTHMGLVEE 414 (589)
Q Consensus 340 ~~~~g~-~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~g~~~~ 414 (589)
+...|+ +++|+..|+++. ..+...|..+..++...|++++|+..|+++++. .| +...|..+..++...|++++
T Consensus 141 l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~~~~~~g~~~eAl~~~~kal~l--dP~~~~a~~~lg~~~~~~g~~~e 218 (382)
T 2h6f_A 141 LKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQ--DAKNYHAWQHRQWVIQEFKLWDN 218 (382)
T ss_dssp HHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCCTT
T ss_pred HHHcccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CccCHHHHHHHHHHHHHcCChHH
Confidence 555554 555555555544 224556677777777778888888888888874 44 56778888888888888888
Q ss_pred HHHHHHHhHHhcCCCCChHHHHHHHHHHHh-cCCHHHH-----HHHHhhC-CCCC-CHHHHHHHHHHHhcCC--CHHHHH
Q 007808 415 GLSYFQSMAMDYSIVPQIEHYGCMVDLLAR-AGRLAEA-----VDFVKRM-PIEA-DAVIWANLLGSCRVYK--NVELAE 484 (589)
Q Consensus 415 A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~A-----~~~~~~~-~~~p-~~~~~~~l~~~~~~~g--~~~~A~ 484 (589)
|+..++++++. .+.+...|+.+..+|.+ .|..++| ++.++++ .+.| +...|..+...+...| ++++|+
T Consensus 219 Al~~~~~al~l--~P~~~~a~~~lg~~l~~l~~~~~eA~~~~el~~~~~Al~l~P~~~~a~~~l~~ll~~~g~~~~~~a~ 296 (382)
T 2h6f_A 219 ELQYVDQLLKE--DVRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRGLSKYPNLL 296 (382)
T ss_dssp HHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTCGGGCHHHH
T ss_pred HHHHHHHHHHh--CCCCHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHccCccchHHHH
Confidence 88888888753 23356778888888888 5665777 4777766 3455 5678888888888888 689999
Q ss_pred HHHHHHHccCCCCCcchHHHHHHHhhcC--------C-hHHHHHHHHHh-hhCCCccCCccceeeeCCeeeeeccccCCC
Q 007808 485 LALERLTELEPKNPANFVMLSNIYGDLG--------R-WKDVARIKVAM-RDTGFKKLPGCSSIEVNEVVMLGCLSRELD 554 (589)
Q Consensus 485 ~~~~~~~~~~p~~~~~~~~l~~~~~~~g--------~-~~~A~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 554 (589)
+.++++ +.+|+++.++..++++|.+.| + +++|+++++++ . +++|.
T Consensus 297 ~~~~~~-~~~p~~~~al~~La~~~~~~~~~~~~~~~~~~~~A~~~~~~l~~------------------------~~DP~ 351 (382)
T 2h6f_A 297 NQLLDL-QPSHSSPYLIAFLVDIYEDMLENQCDNKEDILNKALELCEILAK------------------------EKDTI 351 (382)
T ss_dssp HHHHHH-TTTCCCHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHH------------------------TTCGG
T ss_pred HHHHHh-ccCCCCHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHH------------------------HhCch
Confidence 999998 999999999999999999975 3 58999999998 5 78999
Q ss_pred chHHHHHHHHHHHHc
Q 007808 555 RKSIVRAEANMIKLL 569 (589)
Q Consensus 555 ~~~~~~~l~~~~~~~ 569 (589)
++..+..++..+...
T Consensus 352 r~~~w~~~~~~l~~~ 366 (382)
T 2h6f_A 352 RKEYWRYIGRSLQSK 366 (382)
T ss_dssp GHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHH
Confidence 999999999988754
No 43
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.66 E-value=2.6e-15 Score=138.28 Aligned_cols=236 Identities=9% Similarity=-0.033 Sum_probs=176.4
Q ss_pred hhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCC--CC----hhHH
Q 007808 260 FSWNGLIGGYANNGLFFEVLDAFKRMLTEGRVFPNDATIVTVLSACARLGALDFSKWVHVYAEYNGYQ--GN----VCVG 333 (589)
Q Consensus 260 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~----~~~~ 333 (589)
..|..+...+...|++++|+..|+++.+.. .+...+..+..++...|++++|...+..+.+.... ++ ..++
T Consensus 6 ~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~---~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 82 (258)
T 3uq3_A 6 DKEKAEGNKFYKARQFDEAIEHYNKAWELH---KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSF 82 (258)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS---CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhh---ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHH
Confidence 345666677777777777777777777654 55566677777777777777777777776654311 11 4667
Q ss_pred HHHHHHHHhcCChHHHHHHHhhCCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHHCCCCC-CHhHHHHHHHHHhccCcH
Q 007808 334 NALIDMYAKCGIIENAVDVFNSMDTKDLITWNTIISGLAMHGRGAGALSLFHEMKNAGEMP-DGITFIGILCACTHMGLV 412 (589)
Q Consensus 334 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~g~~ 412 (589)
..+...|...|++++|...|++..+.++. ...+...|++++|...++++... .| +...+..+...+...|++
T Consensus 83 ~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-----~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 155 (258)
T 3uq3_A 83 ARIGNAYHKLGDLKKTIEYYQKSLTEHRT-----ADILTKLRNAEKELKKAEAEAYV--NPEKAEEARLEGKEYFTKSDW 155 (258)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCCC-----HHHHHHHHHHHHHHHHHHHHHHC--CHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhcCch-----hHHHHHHhHHHHHHHHHHHHHHc--CcchHHHHHHHHHHHHHhcCH
Confidence 77777888888888888888776532211 24566678889999999998884 44 456778888889999999
Q ss_pred HHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHhhC-CCCC-CHHHHHHHHHHHhcCCCHHHHHHHHHHH
Q 007808 413 EEGLSYFQSMAMDYSIVPQIEHYGCMVDLLARAGRLAEAVDFVKRM-PIEA-DAVIWANLLGSCRVYKNVELAELALERL 490 (589)
Q Consensus 413 ~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 490 (589)
++|...++++... .+.+...+..++.+|.+.|++++|++.++++ ...| +...+..+..++...|++++|.+.++++
T Consensus 156 ~~A~~~~~~a~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 233 (258)
T 3uq3_A 156 PNAVKAYTEMIKR--APEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAA 233 (258)
T ss_dssp HHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhc--CcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 9999999998764 2345778888999999999999999999987 3334 5778888889999999999999999999
Q ss_pred HccC------CCCCcchHHHHHH
Q 007808 491 TELE------PKNPANFVMLSNI 507 (589)
Q Consensus 491 ~~~~------p~~~~~~~~l~~~ 507 (589)
+++. |++...+..+..+
T Consensus 234 ~~~~~~~~~~p~~~~~~~~l~~~ 256 (258)
T 3uq3_A 234 RTKDAEVNNGSSAREIDQLYYKA 256 (258)
T ss_dssp HHHHHHHHTTTTHHHHHHHHHHT
T ss_pred HHhChhhcCCCchHHHHHHHHHh
Confidence 9988 7766666555543
No 44
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.66 E-value=3.3e-15 Score=138.91 Aligned_cols=245 Identities=11% Similarity=-0.032 Sum_probs=143.3
Q ss_pred HHHHHHHHhCCChHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCC--ChhHHHHHHHHH
Q 007808 263 NGLIGGYANNGLFFEVLDAFKRMLTEGRVFPNDATIVTVLSACARLGALDFSKWVHVYAEYNGYQG--NVCVGNALIDMY 340 (589)
Q Consensus 263 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~ 340 (589)
......+...|++++|+..|+++.+.. +.+...+..+..++...|++++|...+..+.+.+..+ ....+..+...+
T Consensus 7 ~~~a~~~~~~~~~~~A~~~~~~~l~~~--p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~ 84 (272)
T 3u4t_A 7 FRYADFLFKNNNYAEAIEVFNKLEAKK--YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKIL 84 (272)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHHHHTT--CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHH
Confidence 334455555555555555555555543 1222244455555555555555555555555522111 122355566666
Q ss_pred HhcCChHHHHHHHhhCC---CCCcchHHHHHHHHHhCCChHHHHHHHHHHHHCCCCC-CHhHHHHHHHHHhccCcHHHHH
Q 007808 341 AKCGIIENAVDVFNSMD---TKDLITWNTIISGLAMHGRGAGALSLFHEMKNAGEMP-DGITFIGILCACTHMGLVEEGL 416 (589)
Q Consensus 341 ~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~ 416 (589)
...|++++|.+.|++.. +.+..+|..+...|...|++++|+..+++..+. .| +...+..+...+...+++++|.
T Consensus 85 ~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~~~~~~A~ 162 (272)
T 3u4t_A 85 MKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRP--TTTDPKVFYELGQAYYYNKEYVKAD 162 (272)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCS--SCCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHccCHHHHHHHHHHHhhc--CCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 66666666666666544 224456666666677777777777777666653 33 4445555552333345777777
Q ss_pred HHHHHhHHhcCCCCChHHHHHHHHHHHhcCC---HHHHHHHHhhCC----CCCC------HHHHHHHHHHHhcCCCHHHH
Q 007808 417 SYFQSMAMDYSIVPQIEHYGCMVDLLARAGR---LAEAVDFVKRMP----IEAD------AVIWANLLGSCRVYKNVELA 483 (589)
Q Consensus 417 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~----~~p~------~~~~~~l~~~~~~~g~~~~A 483 (589)
+.++++.+.. +.+...+..+..++...|+ +++|...++++. ..|+ ...+..+...|...|++++|
T Consensus 163 ~~~~~a~~~~--p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 240 (272)
T 3u4t_A 163 SSFVKVLELK--PNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKA 240 (272)
T ss_dssp HHHHHHHHHS--TTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHhC--ccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHH
Confidence 7777776431 2235566666667766666 666666665541 1233 24667778889999999999
Q ss_pred HHHHHHHHccCCCCCcchHHHHHHHhhcCC
Q 007808 484 ELALERLTELEPKNPANFVMLSNIYGDLGR 513 (589)
Q Consensus 484 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 513 (589)
.+.++++++++|+++.++..+..+....+.
T Consensus 241 ~~~~~~al~~~p~~~~a~~~l~~~~~~~~~ 270 (272)
T 3u4t_A 241 DAAWKNILALDPTNKKAIDGLKMKLEHHHH 270 (272)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHC--------
T ss_pred HHHHHHHHhcCccHHHHHHHhhhhhccccc
Confidence 999999999999999888888877766543
No 45
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.66 E-value=7.2e-15 Score=132.14 Aligned_cols=210 Identities=10% Similarity=0.015 Sum_probs=161.2
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHhhCC---CCCcchHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHhHHHHHHHH
Q 007808 329 NVCVGNALIDMYAKCGIIENAVDVFNSMD---TKDLITWNTIISGLAMHGRGAGALSLFHEMKNAGEMPDGITFIGILCA 405 (589)
Q Consensus 329 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~ 405 (589)
+...+..++..+...|++++|.+.|+++. +.+...+..+...|...|++++|.+.++++.+.. +.+...+..+...
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~ 85 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGWF 85 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHHH
Confidence 34455556666666666666666666544 2345567777788888888888888888887742 3356778888888
Q ss_pred Hhcc-CcHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHHhcCCHHHHHHHHhhC-CCCC-CHHHHHHHHHHHhcCCCHH
Q 007808 406 CTHM-GLVEEGLSYFQSMAMDYSIVPQ-IEHYGCMVDLLARAGRLAEAVDFVKRM-PIEA-DAVIWANLLGSCRVYKNVE 481 (589)
Q Consensus 406 ~~~~-g~~~~A~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~ 481 (589)
+... |++++|...++++.. .+..|+ ...+..++.+|...|++++|++.++++ ...| +...+..+...+...|+++
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~ 164 (225)
T 2vq2_A 86 LCGRLNRPAESMAYFDKALA-DPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQLG 164 (225)
T ss_dssp HHTTTCCHHHHHHHHHHHHT-STTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHhcCcHHHHHHHHHHHHc-CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHH
Confidence 8888 999999999988875 223343 567788888899999999999988887 3334 5777888888899999999
Q ss_pred HHHHHHHHHHccCC-CCCcchHHHHHHHhhcCChHHHHHHHHHhhhCCCccCCccceeeeCCeeeeeccccCCCchHHHH
Q 007808 482 LAELALERLTELEP-KNPANFVMLSNIYGDLGRWKDVARIKVAMRDTGFKKLPGCSSIEVNEVVMLGCLSRELDRKSIVR 560 (589)
Q Consensus 482 ~A~~~~~~~~~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ 560 (589)
+|...++++++..| +++..+..++.++...|+.++|..+++.+. +..|+++.+..
T Consensus 165 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~------------------------~~~p~~~~~~~ 220 (225)
T 2vq2_A 165 DADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQ------------------------ANFPYSEELQT 220 (225)
T ss_dssp HHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH------------------------HHCTTCHHHHH
T ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHH------------------------HhCCCCHHHHH
Confidence 99999999999999 888888888888999999999999988885 56788888776
Q ss_pred HHHH
Q 007808 561 AEAN 564 (589)
Q Consensus 561 ~l~~ 564 (589)
.+.+
T Consensus 221 ~l~~ 224 (225)
T 2vq2_A 221 VLTG 224 (225)
T ss_dssp HHC-
T ss_pred Hhcc
Confidence 6643
No 46
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.66 E-value=5.2e-15 Score=147.75 Aligned_cols=373 Identities=8% Similarity=0.000 Sum_probs=192.8
Q ss_pred HHHHHhccCChHHHHHHHHHHHHhCCCCchHHHhHHHHHHHcCCCh---HHHHHHHccCCCCCeehHHHHHHHHHhCC--
Q 007808 106 VLKSCVKINALREGEELHCLVLKNGFRANIFVGTALIELYSTGKAI---EAAYKVFGEMDERNVVVWTSMINGYISCG-- 180 (589)
Q Consensus 106 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~---~~A~~~~~~~~~~~~~~~~~l~~~~~~~g-- 180 (589)
+...+.+.|++++|.+.|++..+.|. ...+..|...|...|+. ++|...|++..+.++..+..+...+...|
T Consensus 9 la~~~~~~g~~~~A~~~~~~aa~~g~---~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~~~~A~~~Lg~~~~~~~~~ 85 (452)
T 3e4b_A 9 LANEALKRGDTVTAQQNYQQLAELGY---SEAQVGLADIQVGTRDPAQIKQAEATYRAAADTSPRAQARLGRLLAAKPGA 85 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTC---CTGGGTCC----------------------------CHHHHHHHHHTC--C
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHCCC---HHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCCC
Confidence 33444555666666666666666552 22333344444455555 66666666665555555555555444443
Q ss_pred ---CHHHHHHHHHhCCCC-ChhHHHHHHHHHhcCCChHHH---HHHhcccCC-CChhhHHHHHHHHHhcC----CHHHHH
Q 007808 181 ---DIVSARCLFELAPER-DVILWNTIVSGYIDVRNMIEA---RKLFDQMPK-KDVISWNTMLSGYANNG----DVEECK 248 (589)
Q Consensus 181 ---~~~~a~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a---~~~~~~~~~-~~~~~~~~l~~~~~~~~----~~~~A~ 248 (589)
++++|..+|+...++ +...+..+...|...+..+++ .+.+....+ .+......+...|...+ ..+.+.
T Consensus 86 ~~~~~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g~~~a~~~Lg~~y~~~~~~~~~~~~a~ 165 (452)
T 3e4b_A 86 TEAEHHEAESLLKKAFANGEGNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAGYPEAGLAQVLLYRTQGTYDQHLDDVE 165 (452)
T ss_dssp CHHHHHHHHHHHHHHHHTTCSSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHTCTTHHHHHHHHHHHHTCGGGGHHHHH
T ss_pred CCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCcccCHHHHH
Confidence 455666666554433 333445555555444432222 222221111 23444444555555544 233344
Q ss_pred HHHhhCCCCCchhHHHHHHHHHhCC---ChHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHcC
Q 007808 249 RLFEEMPERNVFSWNGLIGGYANNG---LFFEVLDAFKRMLTEGRVFPNDATIVTVLSACARLGALDFSKWVHVYAEYNG 325 (589)
Q Consensus 249 ~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 325 (589)
.+++.....++..+..|...|...| +.++|++.|++..+.| +++...+..+...|....
T Consensus 166 ~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g--~~~a~~~~~Lg~~y~~g~---------------- 227 (452)
T 3e4b_A 166 RICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRG--TVTAQRVDSVARVLGDAT---------------- 227 (452)
T ss_dssp HHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT--CSCHHHHHHHHHHHTCGG----------------
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC--CHHHHHHHHHHHHHhCCC----------------
Confidence 4444444444445555555555555 5566666666665554 233332233333332220
Q ss_pred CCCChhHHHHHHHHHHhcCChHHHHHHHhhCCCCCcchHHHHHHH-H--HhCCChHHHHHHHHHHHHCCCCCCHhHHHHH
Q 007808 326 YQGNVCVGNALIDMYAKCGIIENAVDVFNSMDTKDLITWNTIISG-L--AMHGRGAGALSLFHEMKNAGEMPDGITFIGI 402 (589)
Q Consensus 326 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~-~--~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l 402 (589)
...++.++|.+.|++....++..+..+... + ...+++++|+.+|++..+.| +...+..|
T Consensus 228 ---------------~~~~d~~~A~~~~~~aa~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~L 289 (452)
T 3e4b_A 228 ---------------LGTPDEKTAQALLEKIAPGYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLL 289 (452)
T ss_dssp ---------------GSSCCHHHHHHHHHHHGGGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHH
T ss_pred ---------------CCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHH
Confidence 001455555555555542244455555555 3 34678888888888888766 55666667
Q ss_pred HHHHhccC-----cHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHh----cCCHHHHHHHHhhCCCCCCHHHHHHHHHH
Q 007808 403 LCACTHMG-----LVEEGLSYFQSMAMDYSIVPQIEHYGCMVDLLAR----AGRLAEAVDFVKRMPIEADAVIWANLLGS 473 (589)
Q Consensus 403 ~~~~~~~g-----~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~p~~~~~~~l~~~ 473 (589)
...|. .| ++++|.++|++.. .-++..+..|...|.. ..++++|.+.|++.....+......+...
T Consensus 290 g~~y~-~G~g~~~d~~~A~~~~~~Aa-----~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~~~A~~~Lg~~ 363 (452)
T 3e4b_A 290 GKLYY-EGKWVPADAKAAEAHFEKAV-----GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQNSADFAIAQL 363 (452)
T ss_dssp HHHHH-HCSSSCCCHHHHHHHHHTTT-----TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTCTTHHHHHHHH
T ss_pred HHHHH-cCCCCCCCHHHHHHHHHHHh-----CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhChHHHHHHHHHH
Confidence 76666 45 8899999988775 3456677777777766 34889999999887323334445556655
Q ss_pred Hhc----CCCHHHHHHHHHHHHccCCCCCcchHHHHHHHhh--cCChHHHHHHHHHhh
Q 007808 474 CRV----YKNVELAELALERLTELEPKNPANFVMLSNIYGD--LGRWKDVARIKVAMR 525 (589)
Q Consensus 474 ~~~----~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~--~g~~~~A~~~~~~~~ 525 (589)
|.. ..+.++|...|+++.+..+. .+...+..+... .++.++|.++.++-.
T Consensus 364 y~~G~g~~~d~~~A~~~~~~A~~~g~~--~a~~~l~~l~~~~~~~~~~~a~~~~~~~~ 419 (452)
T 3e4b_A 364 FSQGKGTKPDPLNAYVFSQLAKAQDTP--EANDLATQLEAPLTPAQRAEGQRLVQQEL 419 (452)
T ss_dssp HHSCTTBCCCHHHHHHHHHHHHTTCCH--HHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred HHhCCCCCCCHHHHHHHHHHHHHCCCH--HHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 543 46899999999999887754 344444444333 345667777766554
No 47
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.66 E-value=1.7e-15 Score=149.87 Aligned_cols=298 Identities=12% Similarity=0.027 Sum_probs=206.8
Q ss_pred hHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCc--HHHHHHHHHHHHhcCChhHHHHHHHHHHHc----CCC-CChhHH
Q 007808 261 SWNGLIGGYANNGLFFEVLDAFKRMLTEGRVFPN--DATIVTVLSACARLGALDFSKWVHVYAEYN----GYQ-GNVCVG 333 (589)
Q Consensus 261 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~-~~~~~~ 333 (589)
.+......+...|++++|+..|+++.+.++..|. ...+..+...+...|+++.|...+.++... +.+ ....++
T Consensus 11 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 90 (406)
T 3sf4_A 11 ELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKAS 90 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHHHH
Confidence 3445556666777777777777777665411111 234556666666777777777766665432 111 124456
Q ss_pred HHHHHHHHhcCChHHHHHHHhhCCC-----CC----cchHHHHHHHHHhCCC--------------------hHHHHHHH
Q 007808 334 NALIDMYAKCGIIENAVDVFNSMDT-----KD----LITWNTIISGLAMHGR--------------------GAGALSLF 384 (589)
Q Consensus 334 ~~l~~~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~l~~~~~~~~~--------------------~~~A~~~~ 384 (589)
..+...|...|++++|...+++..+ ++ ..++..+...|...|+ +++|+..+
T Consensus 91 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~ 170 (406)
T 3sf4_A 91 GNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFY 170 (406)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHHHH
Confidence 6667777777777777777765542 11 2367777788888888 88888888
Q ss_pred HHHHHC----CCCC-CHhHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC----hHHHHHHHHHHHhcCCHHHHHHHH
Q 007808 385 HEMKNA----GEMP-DGITFIGILCACTHMGLVEEGLSYFQSMAMDYSIVPQ----IEHYGCMVDLLARAGRLAEAVDFV 455 (589)
Q Consensus 385 ~~m~~~----~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~ 455 (589)
++.... +..| ...++..+...+...|++++|...++++.....-.++ ...+..+...|...|++++|...+
T Consensus 171 ~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 250 (406)
T 3sf4_A 171 EENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYY 250 (406)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHH
Confidence 876542 1112 2346778888899999999999999888653222233 347788899999999999999999
Q ss_pred hhCC----CCCC----HHHHHHHHHHHhcCCCHHHHHHHHHHHHccCCCC------CcchHHHHHHHhhcCChHHHHHHH
Q 007808 456 KRMP----IEAD----AVIWANLLGSCRVYKNVELAELALERLTELEPKN------PANFVMLSNIYGDLGRWKDVARIK 521 (589)
Q Consensus 456 ~~~~----~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~------~~~~~~l~~~~~~~g~~~~A~~~~ 521 (589)
++.. ..++ ..++..+...+...|++++|...+++++++.+.. ..++..++.+|...|++++|.+.+
T Consensus 251 ~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 330 (406)
T 3sf4_A 251 KKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFA 330 (406)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 8761 1122 4567778889999999999999999999875443 458889999999999999999999
Q ss_pred HHhhhCCCccCCccceeeeCCeeeeeccccCCCchHHHHHHHHHHHHcccCCCCc
Q 007808 522 VAMRDTGFKKLPGCSSIEVNEVVMLGCLSRELDRKSIVRAEANMIKLLPQNNHPL 576 (589)
Q Consensus 522 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~ 576 (589)
++..+..- .....|....++..++.+|..+|+...+.
T Consensus 331 ~~al~~~~------------------~~~~~~~~~~~~~~l~~~~~~~g~~~~~~ 367 (406)
T 3sf4_A 331 EKHLEISR------------------EVGDKSGELTARLNLSDLQMVLGLSYSTN 367 (406)
T ss_dssp HHHHHHHH------------------HTTCHHHHHHHHHHHHHHHHHHHTTSCC-
T ss_pred HHHHHHHH------------------HhcCCcchhHHHHHHHHHHHHhhHhHHHH
Confidence 98852110 00234567888999999999999885543
No 48
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.65 E-value=1.2e-14 Score=133.34 Aligned_cols=207 Identities=7% Similarity=-0.054 Sum_probs=166.2
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHhhCC---CCCcchHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHH
Q 007808 330 VCVGNALIDMYAKCGIIENAVDVFNSMD---TKDLITWNTIISGLAMHGRGAGALSLFHEMKNAGEMPDGITFIGILCAC 406 (589)
Q Consensus 330 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~ 406 (589)
...+..+...+...|++++|.+.|+++. ..+...+..+...|...|++++|++.++++.+.. +.+...+..+...+
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~ 115 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGFL 115 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHH
Confidence 4456666677777777777777777654 2355677888888888999999999999888753 33667788888889
Q ss_pred hccCcHHHHHHHHHHhHHhcCCCC-ChHHHHHHHHHHHhcCCHHHHHHHHhhC-CCCC-CHHHHHHHHHHHhcCCCHHHH
Q 007808 407 THMGLVEEGLSYFQSMAMDYSIVP-QIEHYGCMVDLLARAGRLAEAVDFVKRM-PIEA-DAVIWANLLGSCRVYKNVELA 483 (589)
Q Consensus 407 ~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A 483 (589)
...|++++|.++++++.. .+..| +...+..++..|...|++++|.+.++++ ...| +...+..+...+...|++++|
T Consensus 116 ~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 194 (252)
T 2ho1_A 116 YEQKRYEEAYQRLLEASQ-DTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPA 194 (252)
T ss_dssp HHTTCHHHHHHHHHHHTT-CTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHhHHHHHHHHHHHHHh-CccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHH
Confidence 999999999999998865 22445 4667788889999999999999999887 2333 577788888999999999999
Q ss_pred HHHHHHHHccCCCCCcchHHHHHHHhhcCChHHHHHHHHHhhhCCCccCCccceeeeCCeeeeeccccCCCchHHHHHH
Q 007808 484 ELALERLTELEPKNPANFVMLSNIYGDLGRWKDVARIKVAMRDTGFKKLPGCSSIEVNEVVMLGCLSRELDRKSIVRAE 562 (589)
Q Consensus 484 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l 562 (589)
...++++++..|+++..+..++.++...|++++|.++++++. ++.|+++.....+
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~------------------------~~~p~~~~~~~~l 249 (252)
T 2ho1_A 195 RQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLK------------------------RLYPGSLEYQEFQ 249 (252)
T ss_dssp HHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH------------------------HHCTTSHHHHHHH
T ss_pred HHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHH------------------------HHCCCCHHHHHHH
Confidence 999999999999989999999999999999999999999986 6778877766544
No 49
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.63 E-value=1.5e-15 Score=141.43 Aligned_cols=242 Identities=10% Similarity=-0.059 Sum_probs=193.3
Q ss_pred HhcCChhHHHHHHHHHHHcCC---CCChhHHHHHHHHHHhcCChHHHHHHHhhCC---CCCcchHHHHHHHHHhCCChHH
Q 007808 306 ARLGALDFSKWVHVYAEYNGY---QGNVCVGNALIDMYAKCGIIENAVDVFNSMD---TKDLITWNTIISGLAMHGRGAG 379 (589)
Q Consensus 306 ~~~~~~~~a~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~ 379 (589)
...|++++|...++.+.+... +.+..++..++..+...|++++|...|+++. +.+..+|..+...|...|++++
T Consensus 16 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~ 95 (275)
T 1xnf_A 16 QPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDA 95 (275)
T ss_dssp CCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHH
T ss_pred CccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCHHH
Confidence 345788999999999988632 2246778889999999999999999999876 3467889999999999999999
Q ss_pred HHHHHHHHHHCCCCCCHhHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHhhC-
Q 007808 380 ALSLFHEMKNAGEMPDGITFIGILCACTHMGLVEEGLSYFQSMAMDYSIVPQIEHYGCMVDLLARAGRLAEAVDFVKRM- 458 (589)
Q Consensus 380 A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~- 458 (589)
|+..|+++.+.. +.+...+..+...+...|++++|...++++.+. .|+..........+...|++++|...+++.
T Consensus 96 A~~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~---~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 171 (275)
T 1xnf_A 96 AYEAFDSVLELD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD---DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHF 171 (275)
T ss_dssp HHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-ccccHHHHHHHHHHHHhccHHHHHHHHHHHHHh---CCCChHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 999999999852 336778889999999999999999999999754 355444455555667789999999999776
Q ss_pred C-CCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHccCCC----CCcchHHHHHHHhhcCChHHHHHHHHHhhhCCCccCC
Q 007808 459 P-IEADAVIWANLLGSCRVYKNVELAELALERLTELEPK----NPANFVMLSNIYGDLGRWKDVARIKVAMRDTGFKKLP 533 (589)
Q Consensus 459 ~-~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 533 (589)
. .+++...+ .++..+...++.++|...++++++..|. ++..+..++.+|.+.|++++|...++++.
T Consensus 172 ~~~~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al-------- 242 (275)
T 1xnf_A 172 EKSDKEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAV-------- 242 (275)
T ss_dssp HHSCCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH--------
T ss_pred hcCCcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHH--------
Confidence 2 23343333 4667778888999999999999987764 36789999999999999999999999986
Q ss_pred ccceeeeCCeeeeeccccCCCchHHHHHHHHHHHHcccCCCCcchH
Q 007808 534 GCSSIEVNEVVMLGCLSRELDRKSIVRAEANMIKLLPQNNHPLTFI 579 (589)
Q Consensus 534 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~ 579 (589)
+.+|++...+ +.++..+|+.++|++.+
T Consensus 243 ----------------~~~p~~~~~~---~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 243 ----------------ANNVHNFVEH---RYALLELSLLGQDQDDL 269 (275)
T ss_dssp ----------------TTCCTTCHHH---HHHHHHHHHHHHC----
T ss_pred ----------------hCCchhHHHH---HHHHHHHHHHHhhHHHH
Confidence 6778775544 66777888888877654
No 50
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.63 E-value=1.3e-14 Score=133.11 Aligned_cols=198 Identities=8% Similarity=-0.007 Sum_probs=174.2
Q ss_pred cchHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHH
Q 007808 361 LITWNTIISGLAMHGRGAGALSLFHEMKNAGEMPDGITFIGILCACTHMGLVEEGLSYFQSMAMDYSIVPQIEHYGCMVD 440 (589)
Q Consensus 361 ~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~ 440 (589)
...|..+...+...|++++|+..|+++.+.. +.+...+..+...+...|++++|.+.++++... .+.+...+..++.
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~la~ 113 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALAS--DSRNARVLNNYGG 113 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CcCcHHHHHHHHH
Confidence 4567888899999999999999999999853 346778888999999999999999999999764 2346778889999
Q ss_pred HHHhcCCHHHHHHHHhhC-C--CCC-CHHHHHHHHHHHhcCCCHHHHHHHHHHHHccCCCCCcchHHHHHHHhhcCChHH
Q 007808 441 LLARAGRLAEAVDFVKRM-P--IEA-DAVIWANLLGSCRVYKNVELAELALERLTELEPKNPANFVMLSNIYGDLGRWKD 516 (589)
Q Consensus 441 ~~~~~g~~~~A~~~~~~~-~--~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 516 (589)
.|...|++++|++.++++ . ..| +...+..+...+...|++++|...++++++..|.++..+..++.++...|++++
T Consensus 114 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 193 (252)
T 2ho1_A 114 FLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVP 193 (252)
T ss_dssp HHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHH
Confidence 999999999999999987 3 455 456677788899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhCCCccCCccceeeeCCeeeeeccccCCCchHHHHHHHHHHHHcccCCCCcchHhhhhhc
Q 007808 517 VARIKVAMRDTGFKKLPGCSSIEVNEVVMLGCLSRELDRKSIVRAEANMIKLLPQNNHPLTFIVVIFST 585 (589)
Q Consensus 517 A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 585 (589)
|...++++. +..|+++..+..++.+|...|+.++|++++..+...
T Consensus 194 A~~~~~~~~------------------------~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~ 238 (252)
T 2ho1_A 194 ARQYYDLFA------------------------QGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRL 238 (252)
T ss_dssp HHHHHHHHH------------------------TTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH------------------------HhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 999999986 678999999999999999999999898887766543
No 51
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.62 E-value=1.1e-16 Score=164.81 Aligned_cols=146 Identities=14% Similarity=0.153 Sum_probs=120.7
Q ss_pred cchHHHHHHHHccCChhHHHHHhhcCC-------CCCcccHHHHHHHHHcCCChhHHHHHHHHhhhCCCCCCcccHHHHH
Q 007808 35 YITPRIITACAQLKQMTYARKMFDKIT-------DQNVVSWNAMFNGYAQNEFHRTVVVLFTQMKKLDAMPNCFTFPIVL 107 (589)
Q Consensus 35 ~~~~~l~~~~~~~~~~~~A~~~~~~~~-------~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll 107 (589)
.+||++|++|++.|++++|.++|++|. .||+.+||+||.+|++.|++++|.++|++|.+.|+.||..||+++|
T Consensus 128 ~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntLI 207 (1134)
T 3spa_A 128 QRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAAL 207 (1134)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHHH
Confidence 579999999999999999999997653 4899999999999999999999999999999999999999999999
Q ss_pred HHHhccCCh-HHHHHHHHHHHHhCCCCchHHHhHHHHHHHcCCChHHHHHHHccCCC-----CCeehHHHHHHHHHhCC
Q 007808 108 KSCVKINAL-REGEELHCLVLKNGFRANIFVGTALIELYSTGKAIEAAYKVFGEMDE-----RNVVVWTSMINGYISCG 180 (589)
Q Consensus 108 ~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~l~~~~~~~g 180 (589)
.++++.|+. +.|.++|++|.+.|+.||..+|++++....+.+-++...++...+.. +...+...|.+.|.+.+
T Consensus 208 ~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~vL~~Vrkv~P~f~p~~~~~~~~~t~~LL~dl~s~d~ 286 (1134)
T 3spa_A 208 QCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQLPPPVNTSKLLRDVYAKDG 286 (1134)
T ss_dssp HHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHHHHHHHGGGCCCCCCCCCCCCCCCCCTTTHHHHCCCS
T ss_pred HHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHHHHHHHHHHhCcccCCCCCCcccccchHHHHHHHccCC
Confidence 999999985 78999999999999999999999999877665444444444333322 11334444555555544
No 52
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.62 E-value=1.7e-14 Score=125.24 Aligned_cols=162 Identities=14% Similarity=0.109 Sum_probs=140.9
Q ss_pred CcchHHHHHHHHHhCCChHHHHHHHHHHHHCCCCC-CHhHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHH
Q 007808 360 DLITWNTIISGLAMHGRGAGALSLFHEMKNAGEMP-DGITFIGILCACTHMGLVEEGLSYFQSMAMDYSIVPQIEHYGCM 438 (589)
Q Consensus 360 ~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l 438 (589)
+...|..+...|...|++++|++.|++..+. .| +...+..+..++...|++++|...++.+... .+.+...+..+
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~ 79 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKA--DPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVL--DTTSAEAYYIL 79 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CchhHHHHHHH
Confidence 4567888899999999999999999999884 45 5678888999999999999999999988653 23446677788
Q ss_pred HHHHHhcCCHHHHHHHHhhC-CCCC-CHHHHHHHHHHHhcCCCHHHHHHHHHHHHccCCCCCcchHHHHHHHhhcCChHH
Q 007808 439 VDLLARAGRLAEAVDFVKRM-PIEA-DAVIWANLLGSCRVYKNVELAELALERLTELEPKNPANFVMLSNIYGDLGRWKD 516 (589)
Q Consensus 439 ~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 516 (589)
...+...++++.|.+.+++. ...| +...+..+...+.+.|++++|++.|+++++++|+++.++..++.+|.+.|++++
T Consensus 80 ~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~ 159 (184)
T 3vtx_A 80 GSANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDE 159 (184)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHH
Confidence 88999999999999999887 3334 577788888999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhh
Q 007808 517 VARIKVAMR 525 (589)
Q Consensus 517 A~~~~~~~~ 525 (589)
|++.+++..
T Consensus 160 A~~~~~~al 168 (184)
T 3vtx_A 160 AVKYFKKAL 168 (184)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999999985
No 53
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.61 E-value=6.9e-15 Score=134.11 Aligned_cols=197 Identities=12% Similarity=0.071 Sum_probs=157.4
Q ss_pred CcchHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHH
Q 007808 360 DLITWNTIISGLAMHGRGAGALSLFHEMKNAGEMPDGITFIGILCACTHMGLVEEGLSYFQSMAMDYSIVPQIEHYGCMV 439 (589)
Q Consensus 360 ~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~ 439 (589)
....|..+...+...|++++|+..|+++.+.. +.+...+..+...+...|++++|...++++... .+.+...+..++
T Consensus 22 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la 98 (243)
T 2q7f_A 22 ASMTGGQQMGRGSEFGDYEKAAEAFTKAIEEN-KEDAIPYINFANLLSSVNELERALAFYDKALEL--DSSAATAYYGAG 98 (243)
T ss_dssp --------------------CCTTHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCcchHHHHHHH
Confidence 45677788888999999999999999999852 446778888999999999999999999999764 234678888999
Q ss_pred HHHHhcCCHHHHHHHHhhC-C-CCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHccCCCCCcchHHHHHHHhhcCChHHH
Q 007808 440 DLLARAGRLAEAVDFVKRM-P-IEADAVIWANLLGSCRVYKNVELAELALERLTELEPKNPANFVMLSNIYGDLGRWKDV 517 (589)
Q Consensus 440 ~~~~~~g~~~~A~~~~~~~-~-~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A 517 (589)
..|...|++++|++.++++ . .+.+...+..+...+...|++++|...++++++..|+++..+..++.++.+.|++++|
T Consensus 99 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 178 (243)
T 2q7f_A 99 NVYVVKEMYKEAKDMFEKALRAGMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDEA 178 (243)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHH
T ss_pred HHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcCCHHHH
Confidence 9999999999999999987 2 2346778888889999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhCCCccCCccceeeeCCeeeeeccccCCCchHHHHHHHHHHHHcccCCCCcchHhhhh
Q 007808 518 ARIKVAMRDTGFKKLPGCSSIEVNEVVMLGCLSRELDRKSIVRAEANMIKLLPQNNHPLTFIVVIF 583 (589)
Q Consensus 518 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 583 (589)
+..++++. +.+|+++.++..++.+|...|+.++|+.++....
T Consensus 179 ~~~~~~~~------------------------~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~ 220 (243)
T 2q7f_A 179 LSQFAAVT------------------------EQDPGHADAFYNAGVTYAYKENREKALEMLDKAI 220 (243)
T ss_dssp HHHHHHHH------------------------HHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHH
T ss_pred HHHHHHHH------------------------HhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 99999986 6789999999999999999999999988877654
No 54
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.61 E-value=4.1e-14 Score=136.79 Aligned_cols=247 Identities=9% Similarity=-0.017 Sum_probs=172.1
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHhhCCC--C-CchhHHHHHHHHHhCCC-hHHHHHHHHHHHHcCCCCCcHHHHHHHH
Q 007808 227 DVISWNTMLSGYANNGDVEECKRLFEEMPE--R-NVFSWNGLIGGYANNGL-FFEVLDAFKRMLTEGRVFPNDATIVTVL 302 (589)
Q Consensus 227 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~g~-~~~A~~~~~~~~~~~~~~p~~~~~~~l~ 302 (589)
+...|..+...+.+.|++++|+..|+++.+ | +..+|+.+..++...|+ +++|+..|++++... +-+...|..+.
T Consensus 96 ~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~--P~~~~a~~~~g 173 (382)
T 2h6f_A 96 FRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ--PKNYQVWHHRR 173 (382)
T ss_dssp HHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC--TTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC--CCCHHHHHHHH
Confidence 346788888999999999999999999875 3 56789999999999997 999999999999975 33566777777
Q ss_pred HHHHhcCChhHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHhhCCCCCcchHHHHHHHHHhCCChHHHHH
Q 007808 303 SACARLGALDFSKWVHVYAEYNGYQGNVCVGNALIDMYAKCGIIENAVDVFNSMDTKDLITWNTIISGLAMHGRGAGALS 382 (589)
Q Consensus 303 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 382 (589)
.++...|++++|...++++++.. +.+...| ..+..++...|++++|+.
T Consensus 174 ~~~~~~g~~~eAl~~~~kal~ld-P~~~~a~-------------------------------~~lg~~~~~~g~~~eAl~ 221 (382)
T 2h6f_A 174 VLVEWLRDPSQELEFIADILNQD-AKNYHAW-------------------------------QHRQWVIQEFKLWDNELQ 221 (382)
T ss_dssp HHHHHHTCCTTHHHHHHHHHHHC-TTCHHHH-------------------------------HHHHHHHHHHTCCTTHHH
T ss_pred HHHHHccCHHHHHHHHHHHHHhC-ccCHHHH-------------------------------HHHHHHHHHcCChHHHHH
Confidence 77777777777777777777654 3344444 444455555566666666
Q ss_pred HHHHHHHCCCCC-CHhHHHHHHHHHhc-cCcHHHH-----HHHHHHhHHhcCCCCChHHHHHHHHHHHhcC--CHHHHHH
Q 007808 383 LFHEMKNAGEMP-DGITFIGILCACTH-MGLVEEG-----LSYFQSMAMDYSIVPQIEHYGCMVDLLARAG--RLAEAVD 453 (589)
Q Consensus 383 ~~~~m~~~~~~p-~~~~~~~l~~~~~~-~g~~~~A-----~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~A~~ 453 (589)
.++++++. .| +...|+.+..++.. .|..++| +..+++++.. .+-+...|..+..+|.+.| ++++|++
T Consensus 222 ~~~~al~l--~P~~~~a~~~lg~~l~~l~~~~~eA~~~~el~~~~~Al~l--~P~~~~a~~~l~~ll~~~g~~~~~~a~~ 297 (382)
T 2h6f_A 222 YVDQLLKE--DVRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKL--VPHNESAWNYLKGILQDRGLSKYPNLLN 297 (382)
T ss_dssp HHHHHHHH--CTTCHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHH--STTCHHHHHHHHHHHTTTCGGGCHHHHH
T ss_pred HHHHHHHh--CCCCHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHccCccchHHHHH
Confidence 66666653 33 44556666666655 4443444 4666666542 1223556677777777766 5777777
Q ss_pred HHhhCCCCC-CHHHHHHHHHHHhcCC--------C-HHHHHHHHHHH-HccCCCCCcchHHHHHHHhhc
Q 007808 454 FVKRMPIEA-DAVIWANLLGSCRVYK--------N-VELAELALERL-TELEPKNPANFVMLSNIYGDL 511 (589)
Q Consensus 454 ~~~~~~~~p-~~~~~~~l~~~~~~~g--------~-~~~A~~~~~~~-~~~~p~~~~~~~~l~~~~~~~ 511 (589)
.++++...| +...+..+..+|.+.| + .++|+++|+++ ++++|.....|..++..+...
T Consensus 298 ~~~~~~~~p~~~~al~~La~~~~~~~~~~~~~~~~~~~~A~~~~~~l~~~~DP~r~~~w~~~~~~l~~~ 366 (382)
T 2h6f_A 298 QLLDLQPSHSSPYLIAFLVDIYEDMLENQCDNKEDILNKALELCEILAKEKDTIRKEYWRYIGRSLQSK 366 (382)
T ss_dssp HHHHHTTTCCCHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHH
T ss_pred HHHHhccCCCCHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHH
Confidence 777664344 4556666667776653 2 58899999999 899998888888887776543
No 55
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.60 E-value=3.1e-14 Score=127.93 Aligned_cols=197 Identities=12% Similarity=-0.004 Sum_probs=172.9
Q ss_pred CcchHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHH
Q 007808 360 DLITWNTIISGLAMHGRGAGALSLFHEMKNAGEMPDGITFIGILCACTHMGLVEEGLSYFQSMAMDYSIVPQIEHYGCMV 439 (589)
Q Consensus 360 ~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~ 439 (589)
++..|..+...+...|++++|+..++++.+.. +.+...+..+...+...|++++|.+.++++... .+.+...+..++
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~l~ 83 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSI--KPDSAEINNNYG 83 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHh--CCCChHHHHHHH
Confidence 45678888999999999999999999999853 345778888999999999999999999999764 234677888999
Q ss_pred HHHHhc-CCHHHHHHHHhhC-C--CCCC-HHHHHHHHHHHhcCCCHHHHHHHHHHHHccCCCCCcchHHHHHHHhhcCCh
Q 007808 440 DLLARA-GRLAEAVDFVKRM-P--IEAD-AVIWANLLGSCRVYKNVELAELALERLTELEPKNPANFVMLSNIYGDLGRW 514 (589)
Q Consensus 440 ~~~~~~-g~~~~A~~~~~~~-~--~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 514 (589)
..|... |++++|++.++++ . ..|+ ...+..+..++...|++++|+..++++++..|.++..+..++.++.+.|++
T Consensus 84 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~ 163 (225)
T 2vq2_A 84 WFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQL 163 (225)
T ss_dssp HHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcCCH
Confidence 999999 9999999999987 3 3443 567788889999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhCCCccCCccceeeeCCeeeeeccccCC-CchHHHHHHHHHHHHcccCCCCcchHhhhh
Q 007808 515 KDVARIKVAMRDTGFKKLPGCSSIEVNEVVMLGCLSREL-DRKSIVRAEANMIKLLPQNNHPLTFIVVIF 583 (589)
Q Consensus 515 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 583 (589)
++|.+.++++. +.+| +++..+..++.++...|+.+++..+...+.
T Consensus 164 ~~A~~~~~~~~------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 209 (225)
T 2vq2_A 164 GDADYYFKKYQ------------------------SRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQ 209 (225)
T ss_dssp HHHHHHHHHHH------------------------HHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH------------------------HhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 99999999986 6789 999999999999999999988888777664
No 56
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.60 E-value=9.2e-16 Score=158.06 Aligned_cols=123 Identities=15% Similarity=0.115 Sum_probs=99.4
Q ss_pred CCChhHHHHHHHHHHhcCChHHHHHHHhhCC-------CCCcchHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHhHH
Q 007808 327 QGNVCVGNALIDMYAKCGIIENAVDVFNSMD-------TKDLITWNTIISGLAMHGRGAGALSLFHEMKNAGEMPDGITF 399 (589)
Q Consensus 327 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~ 399 (589)
.....+|++||++|++.|++++|.++|.+|. .||+++||+||.+|++.|+.++|.++|++|.+.|+.||..||
T Consensus 124 ~~~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTY 203 (1134)
T 3spa_A 124 SGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSY 203 (1134)
T ss_dssp CHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHH
T ss_pred HhHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHH
Confidence 3345678888888888888888888886543 578888888999999999999999999999999999999999
Q ss_pred HHHHHHHhccCc-HHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHH
Q 007808 400 IGILCACTHMGL-VEEGLSYFQSMAMDYSIVPQIEHYGCMVDLLARAGRLAE 450 (589)
Q Consensus 400 ~~l~~~~~~~g~-~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 450 (589)
+++|.++++.|+ .++|.++|++|..+ |+.||..+|++++....+.+-++.
T Consensus 204 ntLI~glcK~G~~~e~A~~Ll~EM~~k-G~~PD~vtY~~ll~~~eR~~vL~~ 254 (1134)
T 3spa_A 204 AAALQCMGRQDQDAGTIERCLEQMSQE-GLKLQALFTAVLLSEEDRATVLKA 254 (1134)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHHHHH-TCCSHHHHHHSCCCHHHHHHHHHH
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHc-CCCCChhhcccccChhhHHHHHHH
Confidence 999999988887 47888999999654 899999999888776665533333
No 57
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.60 E-value=3.2e-13 Score=125.48 Aligned_cols=185 Identities=11% Similarity=-0.060 Sum_probs=121.9
Q ss_pred HHHHHHHHHHh----cCChHHHHHHHhhCCC-CCcchHHHHHHHHHh----CCChHHHHHHHHHHHHCCCCCCHhHHHHH
Q 007808 332 VGNALIDMYAK----CGIIENAVDVFNSMDT-KDLITWNTIISGLAM----HGRGAGALSLFHEMKNAGEMPDGITFIGI 402 (589)
Q Consensus 332 ~~~~l~~~~~~----~g~~~~A~~~~~~~~~-~~~~~~~~l~~~~~~----~~~~~~A~~~~~~m~~~~~~p~~~~~~~l 402 (589)
.+..+...|.. .+++++|...|++..+ .++..+..+...|.. .+++++|+..|++..+.+ +...+..+
T Consensus 40 a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l 116 (273)
T 1ouv_A 40 GCFNLGVLYYQGQGVEKNLKKAASFYAKACDLNYSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASL 116 (273)
T ss_dssp HHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHH
T ss_pred HHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHH
Confidence 33334444444 4444444444444332 134455555566666 677777777777777653 55666667
Q ss_pred HHHHhc----cCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHh----cCCHHHHHHHHhhCCCCCCHHHHHHHHHHH
Q 007808 403 LCACTH----MGLVEEGLSYFQSMAMDYSIVPQIEHYGCMVDLLAR----AGRLAEAVDFVKRMPIEADAVIWANLLGSC 474 (589)
Q Consensus 403 ~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~ 474 (589)
...|.. .+++++|...|++..+. + +...+..+...|.. .+++++|++.+++.....+...+..+...|
T Consensus 117 g~~~~~~~~~~~~~~~A~~~~~~a~~~-~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~ 192 (273)
T 1ouv_A 117 GGIYHDGKVVTRDFKKAVEYFTKACDL-N---DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLKDSPGCFNAGNMY 192 (273)
T ss_dssp HHHHHHCSSSCCCHHHHHHHHHHHHHT-T---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHcCCCcccCHHHHHHHHHHHHhc-C---cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 777776 77777777777777542 2 45566667777776 777788877777762223456666677777
Q ss_pred hc----CCCHHHHHHHHHHHHccCCCCCcchHHHHHHHhh----cCChHHHHHHHHHhh
Q 007808 475 RV----YKNVELAELALERLTELEPKNPANFVMLSNIYGD----LGRWKDVARIKVAMR 525 (589)
Q Consensus 475 ~~----~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~ 525 (589)
.. .+++++|.+.++++++.+| +..+..++.+|.. .|++++|++.+++..
T Consensus 193 ~~g~~~~~~~~~A~~~~~~a~~~~~--~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~ 249 (273)
T 1ouv_A 193 HHGEGATKNFKEALARYSKACELEN--GGGCFNLGAMQYNGEGVTRNEKQAIENFKKGC 249 (273)
T ss_dssp HHTCSSCCCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHH
T ss_pred HcCCCCCccHHHHHHHHHHHHhCCC--HHHHHHHHHHHHcCCCcccCHHHHHHHHHHHH
Confidence 77 7888888888888887766 5677888888888 888888888888775
No 58
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.59 E-value=5.1e-15 Score=148.81 Aligned_cols=189 Identities=11% Similarity=0.029 Sum_probs=129.8
Q ss_pred CcchHHHHHHHHHhCCCh-HHHHHHHHHHHHCCCCC-CHhHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHH
Q 007808 360 DLITWNTIISGLAMHGRG-AGALSLFHEMKNAGEMP-DGITFIGILCACTHMGLVEEGLSYFQSMAMDYSIVPQIEHYGC 437 (589)
Q Consensus 360 ~~~~~~~l~~~~~~~~~~-~~A~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ 437 (589)
+...+..+...+...|++ ++|++.|++..+. .| +...+..+..+|...|++++|.+.|+++. ...|+...+..
T Consensus 101 ~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al---~~~p~~~~~~~ 175 (474)
T 4abn_A 101 EAQALMLKGKALNVTPDYSPEAEVLLSKAVKL--EPELVEAWNQLGEVYWKKGDVTSAHTCFSGAL---THCKNKVSLQN 175 (474)
T ss_dssp CHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH---TTCCCHHHHHH
T ss_pred hHHHHHHHHHHHHhccccHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH---hhCCCHHHHHH
Confidence 445666666667777777 7777777776663 33 45566667777777777777777777765 33466666666
Q ss_pred HHHHHHhc---------CCHHHHHHHHhhC-CCCC-CHHHHHHHHHHHhcC--------CCHHHHHHHHHHHHccCC---
Q 007808 438 MVDLLARA---------GRLAEAVDFVKRM-PIEA-DAVIWANLLGSCRVY--------KNVELAELALERLTELEP--- 495 (589)
Q Consensus 438 l~~~~~~~---------g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~--------g~~~~A~~~~~~~~~~~p--- 495 (589)
+..+|... |++++|++.++++ ...| +...|..+..+|... |++++|+..|+++++++|
T Consensus 176 lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~ 255 (474)
T 4abn_A 176 LSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKAS 255 (474)
T ss_dssp HHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGGGG
T ss_pred HHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCCcc
Confidence 77777777 7777777777766 2333 456666666666666 777777777777777777
Q ss_pred CCCcchHHHHHHHhhcCChHHHHHHHHHhhhCCCccCCccceeeeCCeeeeeccccCCCchHHHHHHHHHHHHcccCCCC
Q 007808 496 KNPANFVMLSNIYGDLGRWKDVARIKVAMRDTGFKKLPGCSSIEVNEVVMLGCLSRELDRKSIVRAEANMIKLLPQNNHP 575 (589)
Q Consensus 496 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~ 575 (589)
+++.++..++.+|...|++++|++.+++.. +++|+++.++..++.++..+|+.++|
T Consensus 256 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al------------------------~l~p~~~~a~~~l~~~~~~lg~~~eA 311 (474)
T 4abn_A 256 SNPDLHLNRATLHKYEESYGEALEGFSQAA------------------------ALDPAWPEPQQREQQLLEFLSRLTSL 311 (474)
T ss_dssp GCHHHHHHHHHHHHHTTCHHHHHHHHHHHH------------------------HHCTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHcCCHHHHHHHHHHHH------------------------HhCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 677777777777777777777777777764 56777777777777777777766665
Q ss_pred cc
Q 007808 576 LT 577 (589)
Q Consensus 576 ~~ 577 (589)
+.
T Consensus 312 i~ 313 (474)
T 4abn_A 312 LE 313 (474)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 59
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.58 E-value=9.2e-13 Score=122.37 Aligned_cols=225 Identities=10% Similarity=-0.068 Sum_probs=182.3
Q ss_pred CchhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHh----cCChhHHHHHHHHHHHcCCCCChhHH
Q 007808 258 NVFSWNGLIGGYANNGLFFEVLDAFKRMLTEGRVFPNDATIVTVLSACAR----LGALDFSKWVHVYAEYNGYQGNVCVG 333 (589)
Q Consensus 258 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~ 333 (589)
+..++..+...+...|++++|+..|++..+.+ +...+..+...+.. .+++++|...+++..+.+ +...+
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~----~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~ 77 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLK----ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGC 77 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT----CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHCC----CHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHH
Confidence 45566777778888888888888888887744 34566677777777 888888888888888775 66777
Q ss_pred HHHHHHHHh----cCChHHHHHHHhhCCC-CCcchHHHHHHHHHh----CCChHHHHHHHHHHHHCCCCCCHhHHHHHHH
Q 007808 334 NALIDMYAK----CGIIENAVDVFNSMDT-KDLITWNTIISGLAM----HGRGAGALSLFHEMKNAGEMPDGITFIGILC 404 (589)
Q Consensus 334 ~~l~~~~~~----~g~~~~A~~~~~~~~~-~~~~~~~~l~~~~~~----~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~ 404 (589)
..+...|.. .+++++|...|++..+ .+...+..+...|.. .+++++|+..|++..+.+ +...+..+..
T Consensus 78 ~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~ 154 (273)
T 1ouv_A 78 HLLGNLYYSGQGVSQNTNKALQYYSKACDLKYAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTILGS 154 (273)
T ss_dssp HHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHH
T ss_pred HHHHHHHhCCCCcccCHHHHHHHHHHHHHcCCccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHHHH
Confidence 788888888 8888888888887664 366778888888888 999999999999999865 5566777888
Q ss_pred HHhc----cCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHh----cCCHHHHHHHHhhCCCCCCHHHHHHHHHHHhc
Q 007808 405 ACTH----MGLVEEGLSYFQSMAMDYSIVPQIEHYGCMVDLLAR----AGRLAEAVDFVKRMPIEADAVIWANLLGSCRV 476 (589)
Q Consensus 405 ~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~ 476 (589)
.|.. .+++++|...|++..+. .+...+..+...|.. .+++++|++.+++.....+...+..+...|..
T Consensus 155 ~~~~~~~~~~~~~~A~~~~~~a~~~----~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~l~~~~~~ 230 (273)
T 1ouv_A 155 LYDAGRGTPKDLKKALASYDKACDL----KDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELENGGGCFNLGAMQYN 230 (273)
T ss_dssp HHHHTSSSCCCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHcCCCCCCCHHHHHHHHHHHHHC----CCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHc
Confidence 8887 89999999999998753 356778889999999 99999999999987312236777778888888
Q ss_pred ----CCCHHHHHHHHHHHHccCCC
Q 007808 477 ----YKNVELAELALERLTELEPK 496 (589)
Q Consensus 477 ----~g~~~~A~~~~~~~~~~~p~ 496 (589)
.+++++|.+.|+++++++|+
T Consensus 231 g~~~~~~~~~A~~~~~~a~~~~~~ 254 (273)
T 1ouv_A 231 GEGVTRNEKQAIENFKKGCKLGAK 254 (273)
T ss_dssp TSSSSCCSTTHHHHHHHHHHHTCH
T ss_pred CCCcccCHHHHHHHHHHHHHcCCH
Confidence 99999999999999999886
No 60
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.57 E-value=2.2e-14 Score=142.19 Aligned_cols=260 Identities=12% Similarity=0.014 Sum_probs=171.3
Q ss_pred HHHHHHHhCCChHHHHHHHHHHHHcCCCCCcH----HHHHHHHHHHHhcCChhHHHHHHHHHHHc----C-CCCChhHHH
Q 007808 264 GLIGGYANNGLFFEVLDAFKRMLTEGRVFPND----ATIVTVLSACARLGALDFSKWVHVYAEYN----G-YQGNVCVGN 334 (589)
Q Consensus 264 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~-~~~~~~~~~ 334 (589)
.+...+...|++++|+..|+++++.+ +.+. ..+..+...+...|+++.|...++++.+. + .+.....+.
T Consensus 53 ~~g~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 130 (411)
T 4a1s_A 53 LEGERLCNAGDCRAGVAFFQAAIQAG--TEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSG 130 (411)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC--CSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHhCcHHHHHHHHHHHHHhc--ccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHH
Confidence 34455566666666666666666543 1111 24555555566666666666666555432 1 112334555
Q ss_pred HHHHHHHhcCChHHHHHHHhhCCCC---------CcchHHHHHHHHHhCCC-----------------hHHHHHHHHHHH
Q 007808 335 ALIDMYAKCGIIENAVDVFNSMDTK---------DLITWNTIISGLAMHGR-----------------GAGALSLFHEMK 388 (589)
Q Consensus 335 ~l~~~~~~~g~~~~A~~~~~~~~~~---------~~~~~~~l~~~~~~~~~-----------------~~~A~~~~~~m~ 388 (589)
.+...|...|++++|...|++..+. ...++..+...|...|+ +++|+..+++..
T Consensus 131 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al 210 (411)
T 4a1s_A 131 NLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENL 210 (411)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHH
Confidence 6666666666666666666654311 22356667777777777 777877777765
Q ss_pred HC----CCCC-CHhHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC----hHHHHHHHHHHHhcCCHHHHHHHHhhCC
Q 007808 389 NA----GEMP-DGITFIGILCACTHMGLVEEGLSYFQSMAMDYSIVPQ----IEHYGCMVDLLARAGRLAEAVDFVKRMP 459 (589)
Q Consensus 389 ~~----~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 459 (589)
+. +-.| ...++..+...+...|++++|...+++......-.++ ...+..+..+|...|++++|++.++++.
T Consensus 211 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 290 (411)
T 4a1s_A 211 KLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTL 290 (411)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHH
Confidence 41 1112 2346777788888889999999888887653211122 2367788888999999999998888761
Q ss_pred -C---CCC----HHHHHHHHHHHhcCCCHHHHHHHHHHHHccCCCC------CcchHHHHHHHhhcCChHHHHHHHHHhh
Q 007808 460 -I---EAD----AVIWANLLGSCRVYKNVELAELALERLTELEPKN------PANFVMLSNIYGDLGRWKDVARIKVAMR 525 (589)
Q Consensus 460 -~---~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~------~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 525 (589)
. ..+ ...+..+...+...|++++|...+++++++.+.. ..++..++.+|.+.|++++|.+.+++..
T Consensus 291 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 370 (411)
T 4a1s_A 291 ALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHL 370 (411)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 1 111 4566777788899999999999999998865432 3488889999999999999999998885
No 61
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.57 E-value=7.5e-14 Score=125.89 Aligned_cols=182 Identities=12% Similarity=0.046 Sum_probs=102.5
Q ss_pred chHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHH
Q 007808 362 ITWNTIISGLAMHGRGAGALSLFHEMKNAGEMPDGITFIGILCACTHMGLVEEGLSYFQSMAMDYSIVPQIEHYGCMVDL 441 (589)
Q Consensus 362 ~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~ 441 (589)
..+......+...|++++|+..|++..+....++...+..+..++...|++++|++.+++..+. .+.+...|..+..+
T Consensus 8 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~~~ 85 (228)
T 4i17_A 8 NQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKK--NYNLANAYIGKSAA 85 (228)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--TCSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHh--CcchHHHHHHHHHH
Confidence 3444445555555555555555555555322134444444555555555555555555555431 11123445555555
Q ss_pred HHhcCCHHHHHHHHhhC-CCCC-CH-------HHHHHHHHHHhcCCCHHHHHHHHHHHHccCCC--CCcchHHHHHHHhh
Q 007808 442 LARAGRLAEAVDFVKRM-PIEA-DA-------VIWANLLGSCRVYKNVELAELALERLTELEPK--NPANFVMLSNIYGD 510 (589)
Q Consensus 442 ~~~~g~~~~A~~~~~~~-~~~p-~~-------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~--~~~~~~~l~~~~~~ 510 (589)
|...|++++|++.+++. ...| +. ..|..+...+...|++++|++.|+++++++|+ ++.++..++.+|..
T Consensus 86 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~ 165 (228)
T 4i17_A 86 YRDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALYSLGVLFYN 165 (228)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHH
T ss_pred HHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHH
Confidence 55555555555555554 2222 22 23444445555555555555555555555555 55555555555555
Q ss_pred cCCh---------------------------HHHHHHHHHhhhCCCccCCccceeeeCCeeeeeccccCCCchHHHHHHH
Q 007808 511 LGRW---------------------------KDVARIKVAMRDTGFKKLPGCSSIEVNEVVMLGCLSRELDRKSIVRAEA 563 (589)
Q Consensus 511 ~g~~---------------------------~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~ 563 (589)
.|+. ++|+..+++.. +++|+++.+...|+
T Consensus 166 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~------------------------~l~p~~~~~~~~l~ 221 (228)
T 4i17_A 166 NGADVLRKATPLASSNKEKYASEKAKADAAFKKAVDYLGEAV------------------------TLSPNRTEIKQMQD 221 (228)
T ss_dssp HHHHHHHHHGGGTTTCHHHHHHHHHHHHHHHHHHHHHHHHHH------------------------HHCTTCHHHHHHHH
T ss_pred HHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHh------------------------hcCCCCHHHHHHHH
Confidence 5554 88888888875 89999999999999
Q ss_pred HHHHHc
Q 007808 564 NMIKLL 569 (589)
Q Consensus 564 ~~~~~~ 569 (589)
.+...+
T Consensus 222 ~i~~~~ 227 (228)
T 4i17_A 222 QVKAMI 227 (228)
T ss_dssp HHHTTC
T ss_pred HHHHhh
Confidence 987543
No 62
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.56 E-value=4.9e-14 Score=122.35 Aligned_cols=161 Identities=11% Similarity=0.066 Sum_probs=144.3
Q ss_pred CHhHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHhhC-CCCC-CHHHHHHHHH
Q 007808 395 DGITFIGILCACTHMGLVEEGLSYFQSMAMDYSIVPQIEHYGCMVDLLARAGRLAEAVDFVKRM-PIEA-DAVIWANLLG 472 (589)
Q Consensus 395 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~ 472 (589)
+...|..+...|...|++++|++.|+++++.. +-+...+..++.+|.+.|++++|+..++++ ...| +...+..+..
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 81 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD--PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAEAYYILGS 81 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchhHHHHHHHHH
Confidence 56778999999999999999999999998642 345778999999999999999999999988 2333 5677777778
Q ss_pred HHhcCCCHHHHHHHHHHHHccCCCCCcchHHHHHHHhhcCChHHHHHHHHHhhhCCCccCCccceeeeCCeeeeeccccC
Q 007808 473 SCRVYKNVELAELALERLTELEPKNPANFVMLSNIYGDLGRWKDVARIKVAMRDTGFKKLPGCSSIEVNEVVMLGCLSRE 552 (589)
Q Consensus 473 ~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 552 (589)
.+...++++.|...++++.++.|.++.++..++.+|.+.|++++|++.+++.. +++
T Consensus 82 ~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l------------------------~~~ 137 (184)
T 3vtx_A 82 ANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTI------------------------SIK 137 (184)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH------------------------HHC
T ss_pred HHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHH------------------------Hhc
Confidence 89999999999999999999999999999999999999999999999999986 789
Q ss_pred CCchHHHHHHHHHHHHcccCCCCcchHhh
Q 007808 553 LDRKSIVRAEANMIKLLPQNNHPLTFIVV 581 (589)
Q Consensus 553 p~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 581 (589)
|+++.++..+|.+|..+|+.++|+.....
T Consensus 138 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~ 166 (184)
T 3vtx_A 138 PGFIRAYQSIGLAYEGKGLRDEAVKYFKK 166 (184)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred chhhhHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 99999999999999999999999887654
No 63
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.56 E-value=5.3e-14 Score=134.95 Aligned_cols=264 Identities=14% Similarity=0.048 Sum_probs=182.2
Q ss_pred HHHHHHHHhCCChHHHHHHHHHHHHcCCCCCc--HHHHHHHHHHHHhcCChhHHHHHHHHHHHc----CCC-CChhHHHH
Q 007808 263 NGLIGGYANNGLFFEVLDAFKRMLTEGRVFPN--DATIVTVLSACARLGALDFSKWVHVYAEYN----GYQ-GNVCVGNA 335 (589)
Q Consensus 263 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~-~~~~~~~~ 335 (589)
......+...|++++|+..|+++.+..+-.|. ...+..+...+...|+++.|...+..+.+. +.+ ....++..
T Consensus 9 ~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 88 (338)
T 3ro2_A 9 ALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGN 88 (338)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHH
Confidence 33455566677777777777777665411111 245556666667777777777766665432 111 12445666
Q ss_pred HHHHHHhcCChHHHHHHHhhCCC-----CC----cchHHHHHHHHHhCCC--------------------hHHHHHHHHH
Q 007808 336 LIDMYAKCGIIENAVDVFNSMDT-----KD----LITWNTIISGLAMHGR--------------------GAGALSLFHE 386 (589)
Q Consensus 336 l~~~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~l~~~~~~~~~--------------------~~~A~~~~~~ 386 (589)
+...|...|++++|...+++..+ ++ ..++..+...+...|+ +++|+..+++
T Consensus 89 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~ 168 (338)
T 3ro2_A 89 LGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEE 168 (338)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHH
Confidence 77777777777777777766542 11 2366777777888888 8888888877
Q ss_pred HHHC----CCCC-CHhHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC----hHHHHHHHHHHHhcCCHHHHHHHHhh
Q 007808 387 MKNA----GEMP-DGITFIGILCACTHMGLVEEGLSYFQSMAMDYSIVPQ----IEHYGCMVDLLARAGRLAEAVDFVKR 457 (589)
Q Consensus 387 m~~~----~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~ 457 (589)
.... +..| ....+..+...+...|++++|...++++.......++ ...+..++..|...|++++|.+.+++
T Consensus 169 a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 248 (338)
T 3ro2_A 169 NLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKK 248 (338)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 6541 1112 2346777888889999999999999887643211122 33677888999999999999999987
Q ss_pred CC----CCCC----HHHHHHHHHHHhcCCCHHHHHHHHHHHHccCCCC------CcchHHHHHHHhhcCChHHHHHHHHH
Q 007808 458 MP----IEAD----AVIWANLLGSCRVYKNVELAELALERLTELEPKN------PANFVMLSNIYGDLGRWKDVARIKVA 523 (589)
Q Consensus 458 ~~----~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~------~~~~~~l~~~~~~~g~~~~A~~~~~~ 523 (589)
.. ..++ ...+..+...+...|++++|...+++++++.|.. ..++..++.+|.+.|++++|.+.+++
T Consensus 249 al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 328 (338)
T 3ro2_A 249 TLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEK 328 (338)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHH
Confidence 61 1122 4566777788999999999999999999865543 33788999999999999999999999
Q ss_pred hhh
Q 007808 524 MRD 526 (589)
Q Consensus 524 ~~~ 526 (589)
..+
T Consensus 329 a~~ 331 (338)
T 3ro2_A 329 HLE 331 (338)
T ss_dssp HHH
T ss_pred HHH
Confidence 863
No 64
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.55 E-value=4.7e-14 Score=141.73 Aligned_cols=194 Identities=9% Similarity=-0.018 Sum_probs=164.0
Q ss_pred CCChhHHHHHHHHHHhcCCh-HHHHHHHhhCC---CCCcchHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHhHHHHH
Q 007808 327 QGNVCVGNALIDMYAKCGII-ENAVDVFNSMD---TKDLITWNTIISGLAMHGRGAGALSLFHEMKNAGEMPDGITFIGI 402 (589)
Q Consensus 327 ~~~~~~~~~l~~~~~~~g~~-~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l 402 (589)
+.+...+..+...|...|++ ++|++.|++.. ..+...|..+..+|...|++++|+..|++..+. .|+...+..+
T Consensus 99 ~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~l 176 (474)
T 4abn_A 99 QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGALTH--CKNKVSLQNL 176 (474)
T ss_dssp CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT--CCCHHHHHHH
T ss_pred chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCHHHHHHH
Confidence 34566666777777777777 77777777654 235668888889999999999999999999984 6777888889
Q ss_pred HHHHhcc---------CcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhc--------CCHHHHHHHHhhC-CCCC--
Q 007808 403 LCACTHM---------GLVEEGLSYFQSMAMDYSIVPQIEHYGCMVDLLARA--------GRLAEAVDFVKRM-PIEA-- 462 (589)
Q Consensus 403 ~~~~~~~---------g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--------g~~~~A~~~~~~~-~~~p-- 462 (589)
...+... |++++|.+.++++.+. .+.+...|..+..+|... |++++|++.|+++ ...|
T Consensus 177 g~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~ 254 (474)
T 4abn_A 177 SMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQM--DVLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKA 254 (474)
T ss_dssp HHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGGG
T ss_pred HHHHHHhccCChhhhhhhHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCCc
Confidence 9999999 9999999999999763 234578889999999998 9999999999988 3455
Q ss_pred --CHHHHHHHHHHHhcCCCHHHHHHHHHHHHccCCCCCcchHHHHHHHhhcCChHHHHHHHHHh
Q 007808 463 --DAVIWANLLGSCRVYKNVELAELALERLTELEPKNPANFVMLSNIYGDLGRWKDVARIKVAM 524 (589)
Q Consensus 463 --~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 524 (589)
+...|..+..+|...|++++|.+.|+++++++|+++.++..++.++...|++++|++.+.++
T Consensus 255 ~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~~~eAi~~~~~~ 318 (474)
T 4abn_A 255 SSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLESKGKT 318 (474)
T ss_dssp GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred ccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 78889999999999999999999999999999999999999999999999999999866554
No 65
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.54 E-value=5.2e-14 Score=139.09 Aligned_cols=273 Identities=11% Similarity=0.048 Sum_probs=211.7
Q ss_pred CCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC----hhHHHHHHHHHHhcCChHHHHHHHhhCCC-----C--
Q 007808 291 VFPNDATIVTVLSACARLGALDFSKWVHVYAEYNGYQGN----VCVGNALIDMYAKCGIIENAVDVFNSMDT-----K-- 359 (589)
Q Consensus 291 ~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~-- 359 (589)
..+....+......+...|++++|...++.+.+.+ +.+ ..++..+...|...|++++|...+++... .
T Consensus 5 ~~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 83 (406)
T 3sf4_A 5 MEASCLELALEGERLCKSGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQ 83 (406)
T ss_dssp CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcccc
Confidence 34556667778888999999999999999999875 333 35788899999999999999999887641 1
Q ss_pred --CcchHHHHHHHHHhCCChHHHHHHHHHHHHCCC-CCC----HhHHHHHHHHHhccCc--------------------H
Q 007808 360 --DLITWNTIISGLAMHGRGAGALSLFHEMKNAGE-MPD----GITFIGILCACTHMGL--------------------V 412 (589)
Q Consensus 360 --~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~-~p~----~~~~~~l~~~~~~~g~--------------------~ 412 (589)
...++..+...|...|++++|+..+++..+... .++ ..++..+...+...|+ +
T Consensus 84 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~ 163 (406)
T 3sf4_A 84 LGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDAL 163 (406)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHH
Confidence 245788889999999999999999998876210 112 3467888889999999 9
Q ss_pred HHHHHHHHHhHHhcCCCCC----hHHHHHHHHHHHhcCCHHHHHHHHhhCC----CCCC----HHHHHHHHHHHhcCCCH
Q 007808 413 EEGLSYFQSMAMDYSIVPQ----IEHYGCMVDLLARAGRLAEAVDFVKRMP----IEAD----AVIWANLLGSCRVYKNV 480 (589)
Q Consensus 413 ~~A~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~p~----~~~~~~l~~~~~~~g~~ 480 (589)
++|...+++......-.++ ...+..+...|...|++++|++.++++. ..++ ...+..+...+...|++
T Consensus 164 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 243 (406)
T 3sf4_A 164 QAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEF 243 (406)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCh
Confidence 9999999877542111122 4567888999999999999999998871 1223 23677788899999999
Q ss_pred HHHHHHHHHHHccCCCC------CcchHHHHHHHhhcCChHHHHHHHHHhhhCCCccCCccceeeeCCeeeeeccccCCC
Q 007808 481 ELAELALERLTELEPKN------PANFVMLSNIYGDLGRWKDVARIKVAMRDTGFKKLPGCSSIEVNEVVMLGCLSRELD 554 (589)
Q Consensus 481 ~~A~~~~~~~~~~~p~~------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 554 (589)
++|...+++++++.|.. ..++..++.+|...|++++|++.+++..+..-. ....|.
T Consensus 244 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~------------------~~~~~~ 305 (406)
T 3sf4_A 244 ETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQE------------------LNDRIG 305 (406)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH------------------TTCHHH
T ss_pred HHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHh------------------cCCcHH
Confidence 99999999999876654 568889999999999999999999988521100 011344
Q ss_pred chHHHHHHHHHHHHcccCCCCcchHhhh
Q 007808 555 RKSIVRAEANMIKLLPQNNHPLTFIVVI 582 (589)
Q Consensus 555 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 582 (589)
.+.++..+|.+|..+|+..+|+.+....
T Consensus 306 ~~~~~~~la~~~~~~g~~~~A~~~~~~a 333 (406)
T 3sf4_A 306 EGRACWSLGNAYTALGNHDQAMHFAEKH 333 (406)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 4778999999999999998888876653
No 66
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.53 E-value=1.1e-14 Score=144.39 Aligned_cols=273 Identities=13% Similarity=0.047 Sum_probs=211.3
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCh----hHHHHHHHHHHhcCChHHHHHHHhhCCC---------CCc
Q 007808 295 DATIVTVLSACARLGALDFSKWVHVYAEYNGYQGNV----CVGNALIDMYAKCGIIENAVDVFNSMDT---------KDL 361 (589)
Q Consensus 295 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~---------~~~ 361 (589)
...+..+...+...|++++|...++.+.+.+ +.+. .++..+...|...|++++|...|++..+ ...
T Consensus 48 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 126 (411)
T 4a1s_A 48 CLELALEGERLCNAGDCRAGVAFFQAAIQAG-TEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEA 126 (411)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHHhc-ccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHH
Confidence 3445566778899999999999999999875 3333 4788899999999999999999887652 134
Q ss_pred chHHHHHHHHHhCCChHHHHHHHHHHHHC----CCCC-CHhHHHHHHHHHhccCc-----------------HHHHHHHH
Q 007808 362 ITWNTIISGLAMHGRGAGALSLFHEMKNA----GEMP-DGITFIGILCACTHMGL-----------------VEEGLSYF 419 (589)
Q Consensus 362 ~~~~~l~~~~~~~~~~~~A~~~~~~m~~~----~~~p-~~~~~~~l~~~~~~~g~-----------------~~~A~~~~ 419 (589)
..+..+...|...|++++|+..+++..+. +-.| ...++..+...|...|+ +++|.+.+
T Consensus 127 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~ 206 (411)
T 4a1s_A 127 KSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFY 206 (411)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHH
Confidence 57888999999999999999999987763 1122 23467888889999999 99999998
Q ss_pred HHhHHhc---CCCC-ChHHHHHHHHHHHhcCCHHHHHHHHhhCC-C---CCC----HHHHHHHHHHHhcCCCHHHHHHHH
Q 007808 420 QSMAMDY---SIVP-QIEHYGCMVDLLARAGRLAEAVDFVKRMP-I---EAD----AVIWANLLGSCRVYKNVELAELAL 487 (589)
Q Consensus 420 ~~~~~~~---~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~---~p~----~~~~~~l~~~~~~~g~~~~A~~~~ 487 (589)
++...-. +..+ ....+..+...|...|++++|++.+++.. . .++ ...+..+...+...|++++|...+
T Consensus 207 ~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 286 (411)
T 4a1s_A 207 QENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHY 286 (411)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHH
Confidence 8875421 1112 23577888999999999999999998872 1 122 236777888999999999999999
Q ss_pred HHHHccCCCC------CcchHHHHHHHhhcCChHHHHHHHHHhhhCCCccCCccceeeeCCeeeeeccccCCCchHHHHH
Q 007808 488 ERLTELEPKN------PANFVMLSNIYGDLGRWKDVARIKVAMRDTGFKKLPGCSSIEVNEVVMLGCLSRELDRKSIVRA 561 (589)
Q Consensus 488 ~~~~~~~p~~------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~ 561 (589)
++++++.|.. ..++..++.+|...|++++|.+++++..+..-. ....+....++..
T Consensus 287 ~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~------------------~~~~~~~~~~~~~ 348 (411)
T 4a1s_A 287 KRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQE------------------LGDRIGEARACWS 348 (411)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH------------------HTCHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH------------------CCChHHHHHHHHH
Confidence 9999977643 568889999999999999999999988521100 0123445678999
Q ss_pred HHHHHHHcccCCCCcchHhhhhhcc
Q 007808 562 EANMIKLLPQNNHPLTFIVVIFSTF 586 (589)
Q Consensus 562 l~~~~~~~~~~~~~~~~~~~~~~~~ 586 (589)
++.+|..+|+..+|+.+.......+
T Consensus 349 la~~~~~~g~~~~A~~~~~~al~~~ 373 (411)
T 4a1s_A 349 LGNAHSAIGGHERALKYAEQHLQLA 373 (411)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHhccHHHHHHHHHHHHHHH
Confidence 9999999999999988877655444
No 67
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.53 E-value=3.3e-12 Score=120.80 Aligned_cols=218 Identities=11% Similarity=-0.003 Sum_probs=105.7
Q ss_pred HHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHh-------cCCh-------hHHHHHHHHHHHcCCCCChhHHHHHHHHHH
Q 007808 276 FEVLDAFKRMLTEGRVFPNDATIVTVLSACAR-------LGAL-------DFSKWVHVYAEYNGYQGNVCVGNALIDMYA 341 (589)
Q Consensus 276 ~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~-------~~~~-------~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 341 (589)
++|+..|++++... +.+...|...+..+.. .|++ ++|..+++++++.-.+.+...+..++..+.
T Consensus 33 ~~a~~~~~~al~~~--p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~ 110 (308)
T 2ond_A 33 KRVMFAYEQCLLVL--GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEE 110 (308)
T ss_dssp HHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc--CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 56666777766643 2344455555444432 3554 555555555555211334445555555555
Q ss_pred hcCChHHHHHHHhhCCC--C-Ccc-hHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHH-hccCcHHHHH
Q 007808 342 KCGIIENAVDVFNSMDT--K-DLI-TWNTIISGLAMHGRGAGALSLFHEMKNAGEMPDGITFIGILCAC-THMGLVEEGL 416 (589)
Q Consensus 342 ~~g~~~~A~~~~~~~~~--~-~~~-~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~-~~~g~~~~A~ 416 (589)
+.|++++|.++|+++.+ | +.. .|..++..+.+.|++++|..+|++..+.. +++...|...+... ...|++++|.
T Consensus 111 ~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~a~~~~~~~~~~~~A~ 189 (308)
T 2ond_A 111 SRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSVAF 189 (308)
T ss_dssp HTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST-TCCTHHHHHHHHHHHHTSCCHHHHH
T ss_pred hcCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHcCCHHHHH
Confidence 55555555555555432 2 122 45555555555555555555555555432 12222232222221 1245555555
Q ss_pred HHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHhhCC----CCC--CHHHHHHHHHHHhcCCCHHHHHHHHHHH
Q 007808 417 SYFQSMAMDYSIVPQIEHYGCMVDLLARAGRLAEAVDFVKRMP----IEA--DAVIWANLLGSCRVYKNVELAELALERL 490 (589)
Q Consensus 417 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 490 (589)
.+|++.++.. +.+...|..++..+.+.|++++|..+|+++. .+| ....|..++....+.|+.+.|..+++++
T Consensus 190 ~~~~~al~~~--p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a 267 (308)
T 2ond_A 190 KIFELGLKKY--GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRR 267 (308)
T ss_dssp HHHHHHHHHH--TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred HHHHHHHHhC--CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 5555554422 1234445555555555555555555555541 132 2344444455555555555555555555
Q ss_pred HccCCCCC
Q 007808 491 TELEPKNP 498 (589)
Q Consensus 491 ~~~~p~~~ 498 (589)
++..|+++
T Consensus 268 ~~~~p~~~ 275 (308)
T 2ond_A 268 FTAFREEY 275 (308)
T ss_dssp HHHTTTTT
T ss_pred HHHccccc
Confidence 55555433
No 68
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.53 E-value=9e-14 Score=145.12 Aligned_cols=157 Identities=15% Similarity=0.120 Sum_probs=87.8
Q ss_pred hHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHHhcCCHHHHHHHHhhC-CCCC-CHHHHHHHHHH
Q 007808 397 ITFIGILCACTHMGLVEEGLSYFQSMAMDYSIVPQ-IEHYGCMVDLLARAGRLAEAVDFVKRM-PIEA-DAVIWANLLGS 473 (589)
Q Consensus 397 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~ 473 (589)
.+++.|...+.+.|++++|++.|+++++. .|+ ...|..+..+|.+.|++++|++.|+++ .+.| +...|..+..+
T Consensus 10 ~al~nLG~~~~~~G~~~eAi~~~~kAl~l---~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~nLg~~ 86 (723)
T 4gyw_A 10 DSLNNLANIKREQGNIEEAVRLYRKALEV---FPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNT 86 (723)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 44555555555555555555555555432 232 445555555555555555555555554 2333 34455555555
Q ss_pred HhcCCCHHHHHHHHHHHHccCCCCCcchHHHHHHHhhcCChHHHHHHHHHhhhCCCccCCccceeeeCCeeeeeccccCC
Q 007808 474 CRVYKNVELAELALERLTELEPKNPANFVMLSNIYGDLGRWKDVARIKVAMRDTGFKKLPGCSSIEVNEVVMLGCLSREL 553 (589)
Q Consensus 474 ~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 553 (589)
+.+.|++++|++.|+++++++|+++.+|..++.+|.+.|++++|++.+++.. +++|
T Consensus 87 l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al------------------------~l~P 142 (723)
T 4gyw_A 87 LKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTAL------------------------KLKP 142 (723)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH------------------------HHCS
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH------------------------HhCC
Confidence 5566666666666666666666655666666666666666666666655553 4556
Q ss_pred CchHHHHHHHHHHHHcccCCCCcchHh
Q 007808 554 DRKSIVRAEANMIKLLPQNNHPLTFIV 580 (589)
Q Consensus 554 ~~~~~~~~l~~~~~~~~~~~~~~~~~~ 580 (589)
+++.++..|+.+|..+|+.++|+....
T Consensus 143 ~~~~a~~~L~~~l~~~g~~~~A~~~~~ 169 (723)
T 4gyw_A 143 DFPDAYCNLAHCLQIVCDWTDYDERMK 169 (723)
T ss_dssp CCHHHHHHHHHHHHHTTCCTTHHHHHH
T ss_pred CChHHHhhhhhHHHhcccHHHHHHHHH
Confidence 666666666666666666655554443
No 69
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.52 E-value=4.6e-14 Score=135.36 Aligned_cols=273 Identities=11% Similarity=0.039 Sum_probs=208.6
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC----hhHHHHHHHHHHhcCChHHHHHHHhhCCC---------CCcc
Q 007808 296 ATIVTVLSACARLGALDFSKWVHVYAEYNGYQGN----VCVGNALIDMYAKCGIIENAVDVFNSMDT---------KDLI 362 (589)
Q Consensus 296 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---------~~~~ 362 (589)
..+......+...|++++|...++++.+.. +.+ ...+..+...|...|++++|.+.+++... ....
T Consensus 6 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 84 (338)
T 3ro2_A 6 LELALEGERLCKSGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAK 84 (338)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHH
Confidence 345556677889999999999999999875 333 36778899999999999999999987642 1245
Q ss_pred hHHHHHHHHHhCCChHHHHHHHHHHHHCCC-CCC----HhHHHHHHHHHhccCc--------------------HHHHHH
Q 007808 363 TWNTIISGLAMHGRGAGALSLFHEMKNAGE-MPD----GITFIGILCACTHMGL--------------------VEEGLS 417 (589)
Q Consensus 363 ~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~-~p~----~~~~~~l~~~~~~~g~--------------------~~~A~~ 417 (589)
.+..+...+...|++++|+..+++..+... .++ ..++..+...+...|+ +++|.+
T Consensus 85 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~ 164 (338)
T 3ro2_A 85 ASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVD 164 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHH
Confidence 788889999999999999999999765211 112 3367788889999999 999999
Q ss_pred HHHHhHHhc---CCCC-ChHHHHHHHHHHHhcCCHHHHHHHHhhCC----CCCC----HHHHHHHHHHHhcCCCHHHHHH
Q 007808 418 YFQSMAMDY---SIVP-QIEHYGCMVDLLARAGRLAEAVDFVKRMP----IEAD----AVIWANLLGSCRVYKNVELAEL 485 (589)
Q Consensus 418 ~~~~~~~~~---~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~p~----~~~~~~l~~~~~~~g~~~~A~~ 485 (589)
.+++..... +..+ ....+..+...|...|++++|.+.++++. ..++ ...+..+...+...|++++|..
T Consensus 165 ~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 244 (338)
T 3ro2_A 165 LYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASE 244 (338)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 988765421 1111 14567888999999999999999998872 1122 2367777788999999999999
Q ss_pred HHHHHHccCCCC------CcchHHHHHHHhhcCChHHHHHHHHHhhhCCCccCCccceeeeCCeeeeeccccCCCchHHH
Q 007808 486 ALERLTELEPKN------PANFVMLSNIYGDLGRWKDVARIKVAMRDTGFKKLPGCSSIEVNEVVMLGCLSRELDRKSIV 559 (589)
Q Consensus 486 ~~~~~~~~~p~~------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 559 (589)
.+++++++.|.. ..++..++.+|...|++++|...++++.+..-. ....+....++
T Consensus 245 ~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~------------------~~~~~~~~~~~ 306 (338)
T 3ro2_A 245 YYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQE------------------LKDRIGEGRAC 306 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH------------------HTCHHHHHHHH
T ss_pred HHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHh------------------cCCcHHHHHHH
Confidence 999999876554 568889999999999999999999988521100 01123446688
Q ss_pred HHHHHHHHHcccCCCCcchHhhhhhccc
Q 007808 560 RAEANMIKLLPQNNHPLTFIVVIFSTFA 587 (589)
Q Consensus 560 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 587 (589)
..++.+|...|+.++|+.+.......+.
T Consensus 307 ~~la~~~~~~g~~~~A~~~~~~a~~~~~ 334 (338)
T 3ro2_A 307 WSLGNAYTALGNHDQAMHFAEKHLEISR 334 (338)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHcCChHHHHHHHHHHHHHHH
Confidence 8999999999999999988877665544
No 70
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.50 E-value=4.4e-13 Score=131.32 Aligned_cols=223 Identities=8% Similarity=-0.084 Sum_probs=148.3
Q ss_pred HHHHHHhcCChHHHHHHHhhCCC-----C----CcchHHHHHHHHHhCCChHHHHHHHHHHHHCCC-CC-----CHhHHH
Q 007808 336 LIDMYAKCGIIENAVDVFNSMDT-----K----DLITWNTIISGLAMHGRGAGALSLFHEMKNAGE-MP-----DGITFI 400 (589)
Q Consensus 336 l~~~~~~~g~~~~A~~~~~~~~~-----~----~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~-~p-----~~~~~~ 400 (589)
....+...|++++|...|++..+ + ...++..+...|...|++++|+..+++..+.-. .+ ...++.
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 188 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS 188 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 45556677777777777776542 1 224667777777788888888887777665210 11 124566
Q ss_pred HHHHHHhccCcHHHHHHHHHHhHHhcCCCCC----hHHHHHHHHHHHhcCCHHHHHHHHhhCC------CC-C-CHHHHH
Q 007808 401 GILCACTHMGLVEEGLSYFQSMAMDYSIVPQ----IEHYGCMVDLLARAGRLAEAVDFVKRMP------IE-A-DAVIWA 468 (589)
Q Consensus 401 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~------~~-p-~~~~~~ 468 (589)
.+...|...|++++|...++++..-..-.++ ..++..++.+|...|++++|++.+++.. .. | ...++.
T Consensus 189 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 268 (383)
T 3ulq_A 189 LFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYF 268 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHH
Confidence 7777788888888888887776542211122 2366777788888888888887777651 12 3 245566
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHccC-----CCCCcchHHHHHHHhhcCC---hHHHHHHHHHhhhCCCccCCccceeee
Q 007808 469 NLLGSCRVYKNVELAELALERLTELE-----PKNPANFVMLSNIYGDLGR---WKDVARIKVAMRDTGFKKLPGCSSIEV 540 (589)
Q Consensus 469 ~l~~~~~~~g~~~~A~~~~~~~~~~~-----p~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~~~~~~~~~~~ 540 (589)
.+...+...|++++|...+++++++. |.....+..++.+|...|+ +++|+.++++.
T Consensus 269 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~---------------- 332 (383)
T 3ulq_A 269 LITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK---------------- 332 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT----------------
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC----------------
Confidence 67777888888888888888887753 3323335667778888887 77777777665
Q ss_pred CCeeeeeccccCCCchHHHHHHHHHHHHcccCCCCcchHhhhh
Q 007808 541 NEVVMLGCLSRELDRKSIVRAEANMIKLLPQNNHPLTFIVVIF 583 (589)
Q Consensus 541 ~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 583 (589)
...|+...++..||.+|...|+.++|+.+.....
T Consensus 333 ---------~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al 366 (383)
T 3ulq_A 333 ---------MLYADLEDFAIDVAKYYHERKNFQKASAYFLKVE 366 (383)
T ss_dssp ---------TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred ---------cCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 2456667777888888888888877777665543
No 71
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.47 E-value=2.4e-10 Score=117.90 Aligned_cols=421 Identities=9% Similarity=0.049 Sum_probs=257.6
Q ss_pred CCcccHHHHHHHHHcCCChhHHHHHHHHhhhCCCCCCcccHHHHHHHHhccCC---hHHHHHHHHHHHHhCC-CCchHHH
Q 007808 63 QNVVSWNAMFNGYAQNEFHRTVVVLFTQMKKLDAMPNCFTFPIVLKSCVKINA---LREGEELHCLVLKNGF-RANIFVG 138 (589)
Q Consensus 63 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~---~~~a~~~~~~~~~~~~-~~~~~~~ 138 (589)
.|..+|..++..+.+.+.++.+..+|+++... .+.....|..-+..-.+.++ .+.+.++|++.+...+ +|++..|
T Consensus 64 ~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~-fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRal~~~~~~~sv~LW 142 (679)
T 4e6h_A 64 TDIFLYVKLLKHHVSLKQWKQVYETFDKLHDR-FPLMANIWCMRLSLEFDKMEELDAAVIEPVLARCLSKELGNNDLSLW 142 (679)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHTC--CCCHHHHHHHHHHHTCSSSCCCCHHHH
T ss_pred CCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHhcCCCCCHHHH
Confidence 36667888888887778888888888888765 24455567666776667777 8888888888776541 3666677
Q ss_pred hHHHHHHHcCCCh--------HHHHHHHccCC------CC-CeehHHHHHHHHHh---------CCCHHHHHHHHHhCCC
Q 007808 139 TALIELYSTGKAI--------EAAYKVFGEMD------ER-NVVVWTSMINGYIS---------CGDIVSARCLFELAPE 194 (589)
Q Consensus 139 ~~li~~~~~~g~~--------~~A~~~~~~~~------~~-~~~~~~~l~~~~~~---------~g~~~~a~~~~~~~~~ 194 (589)
..-+....+.++. +...++|+... ++ ....|...+..... +++++.+..+|+.+..
T Consensus 143 ~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~~~~~~R~iy~raL~ 222 (679)
T 4e6h_A 143 LSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQRVQYIRKLYKTLLC 222 (679)
T ss_dssp HHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHhHHHHHHHHHHHHHh
Confidence 6666554444432 22335555422 11 22355555544332 2345556666665553
Q ss_pred C---Ch-hHHHHHHHHHhcCCChHHHHHHhcccCCCChhhHHHHHHHHHhcCCHHHHHHHHhh-------CCC-------
Q 007808 195 R---DV-ILWNTIVSGYIDVRNMIEARKLFDQMPKKDVISWNTMLSGYANNGDVEECKRLFEE-------MPE------- 256 (589)
Q Consensus 195 ~---~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~-------~~~------- 256 (589)
. +. .+|......-...+ ...+.+++.+ ...+++.|...+.+ +..
T Consensus 223 iP~~~~~~~w~~Y~~fe~~~~-~~~a~~~~~e-----------------~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~ 284 (679)
T 4e6h_A 223 QPMDCLESMWQRYTQWEQDVN-QLTARRHIGE-----------------LSAQYMNARSLYQDWLNITKGLKRNLPITLN 284 (679)
T ss_dssp SCCSSHHHHHHHHHHHHHHHC-TTTHHHHHHH-----------------HHHHHHHHHHHHHHHHHHTTTCCCCCCSSST
T ss_pred CccHHHHHHHHHHHHHHHhcC-cchHHHHHHH-----------------hhHHHHHHHHHHHHHHHHHHhHhhccccccc
Confidence 2 11 12211111000000 0001111110 01122223333322 111
Q ss_pred -------C--C------chhHHHHHHHHHhCC-------ChHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHhcCChhHH
Q 007808 257 -------R--N------VFSWNGLIGGYANNG-------LFFEVLDAFKRMLTEGRVFPNDATIVTVLSACARLGALDFS 314 (589)
Q Consensus 257 -------~--~------~~~~~~l~~~~~~~g-------~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a 314 (589)
| + ...|...+.---..+ ..+.+..+|++++... +-+...|...+.-+...|+.+.|
T Consensus 285 ~~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~--p~~~~lW~~ya~~~~~~~~~~~a 362 (679)
T 4e6h_A 285 QATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQHV--CFAPEIWFNMANYQGEKNTDSTV 362 (679)
T ss_dssp TCCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT--TTCHHHHHHHHHHHHHHSCCTTH
T ss_pred cchhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHc--CCCHHHHHHHHHHHHhcCcHHHH
Confidence 0 0 123444444322222 1234567788888763 45677777777778888998889
Q ss_pred H-HHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHhhCCC-------------CC------------cchHHHHH
Q 007808 315 K-WVHVYAEYNGYQGNVCVGNALIDMYAKCGIIENAVDVFNSMDT-------------KD------------LITWNTII 368 (589)
Q Consensus 315 ~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-------------~~------------~~~~~~l~ 368 (589)
. .+++++... .|.+...+...+....+.|+++.|.++|+++.. |+ ..+|...+
T Consensus 363 ~r~il~rAi~~-~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~ 441 (679)
T 4e6h_A 363 ITKYLKLGQQC-IPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYM 441 (679)
T ss_dssp HHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHh-CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHH
Confidence 6 999999875 466777788888888899999999999987753 21 23577778
Q ss_pred HHHHhCCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhcc-CcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCC
Q 007808 369 SGLAMHGRGAGALSLFHEMKNAGEMPDGITFIGILCACTHM-GLVEEGLSYFQSMAMDYSIVPQIEHYGCMVDLLARAGR 447 (589)
Q Consensus 369 ~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 447 (589)
....+.|+.+.|..+|.+..+.-..+....|...+..-.+. ++.+.|.++|+..++.+ +.+...|...++.....|+
T Consensus 442 ~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~--p~~~~~w~~y~~fe~~~~~ 519 (679)
T 4e6h_A 442 NTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKYF--ATDGEYINKYLDFLIYVNE 519 (679)
T ss_dssp HHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHC--CCchHHHHHHHHHHHhCCC
Confidence 87788899999999999998751112233443333332333 55899999999998764 3456667788888888999
Q ss_pred HHHHHHHHhhC-CCCC----CHHHHHHHHHHHhcCCCHHHHHHHHHHHHccCCCCCcchHHHHHHH
Q 007808 448 LAEAVDFVKRM-PIEA----DAVIWANLLGSCRVYKNVELAELALERLTELEPKNPANFVMLSNIY 508 (589)
Q Consensus 448 ~~~A~~~~~~~-~~~p----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 508 (589)
.+.|..+|+++ ...| ....|...+..-.+.|+.+.+..+.+++.+..|+++ ....+++-|
T Consensus 520 ~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~P~~~-~~~~f~~ry 584 (679)
T 4e6h_A 520 ESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKFPEVN-KLEEFTNKY 584 (679)
T ss_dssp HHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHSTTCC-HHHHHHHHT
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCc-HHHHHHHHh
Confidence 99999999987 3233 235677777777889999999999999999999854 333333333
No 72
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.46 E-value=9.4e-13 Score=128.97 Aligned_cols=220 Identities=11% Similarity=-0.009 Sum_probs=128.4
Q ss_pred HHhcCChhHHHHHHHHHHHc----CCCC-ChhHHHHHHHHHHhcCChHHHHHHHhhCCC-----C-----CcchHHHHHH
Q 007808 305 CARLGALDFSKWVHVYAEYN----GYQG-NVCVGNALIDMYAKCGIIENAVDVFNSMDT-----K-----DLITWNTIIS 369 (589)
Q Consensus 305 ~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~-----~~~~~~~l~~ 369 (589)
+...|+++.|...+.++.+. +.++ ...++..+...|...|++++|...+++..+ + ...+++.+..
T Consensus 113 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~ 192 (383)
T 3ulq_A 113 ELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFAT 192 (383)
T ss_dssp HHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHH
Confidence 44445555555555444432 1011 123444555555555555555555544331 1 1235666667
Q ss_pred HHHhCCChHHHHHHHHHHHHCCC-CCC----HhHHHHHHHHHhccCcHHHHHHHHHHhHHh---cCC-CCChHHHHHHHH
Q 007808 370 GLAMHGRGAGALSLFHEMKNAGE-MPD----GITFIGILCACTHMGLVEEGLSYFQSMAMD---YSI-VPQIEHYGCMVD 440 (589)
Q Consensus 370 ~~~~~~~~~~A~~~~~~m~~~~~-~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~-~~~~~~~~~l~~ 440 (589)
.|...|++++|+..+++..+... .++ ..++..+...|...|++++|...+++...- .+. +....++..+..
T Consensus 193 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~ 272 (383)
T 3ulq_A 193 NFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQ 272 (383)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHH
Confidence 77777777777777777654210 011 135666777777778888888777776541 122 222456677777
Q ss_pred HHHhcCCHHHHHHHHhhCC------CCCC-HHHHHHHHHHHhcCCC---HHHHHHHHHHHHccCCCCCcchHHHHHHHhh
Q 007808 441 LLARAGRLAEAVDFVKRMP------IEAD-AVIWANLLGSCRVYKN---VELAELALERLTELEPKNPANFVMLSNIYGD 510 (589)
Q Consensus 441 ~~~~~g~~~~A~~~~~~~~------~~p~-~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 510 (589)
+|.+.|++++|.+.+++.. ..|. ...+..+...+...|+ +++|...+++. ...|.....+..++.+|..
T Consensus 273 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~-~~~~~~~~~~~~la~~y~~ 351 (383)
T 3ulq_A 273 IHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK-MLYADLEDFAIDVAKYYHE 351 (383)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC-cCHHHHHHHHHHHHHHHHH
Confidence 7888888888877777651 1221 1224555566777777 66777777666 2333345577778888888
Q ss_pred cCChHHHHHHHHHhh
Q 007808 511 LGRWKDVARIKVAMR 525 (589)
Q Consensus 511 ~g~~~~A~~~~~~~~ 525 (589)
.|++++|.+.+++..
T Consensus 352 ~g~~~~A~~~~~~al 366 (383)
T 3ulq_A 352 RKNFQKASAYFLKVE 366 (383)
T ss_dssp TTCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH
Confidence 888888888887774
No 73
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.46 E-value=7.8e-14 Score=116.13 Aligned_cols=144 Identities=11% Similarity=0.004 Sum_probs=120.7
Q ss_pred HHHHHhccCcHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHHhcCCHHHHHHHHhhC-CCCC-CHHHHHHHHHHHhcCC
Q 007808 402 ILCACTHMGLVEEGLSYFQSMAMDYSIVPQ-IEHYGCMVDLLARAGRLAEAVDFVKRM-PIEA-DAVIWANLLGSCRVYK 478 (589)
Q Consensus 402 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g 478 (589)
|...+...|++++|+..++.... ..|+ ...+-.+...|.+.|++++|++.|+++ .+.| +...|..+..++...|
T Consensus 3 LG~~~~~~~~~e~ai~~~~~a~~---~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~ 79 (150)
T 4ga2_A 3 LGSMRRSKADVERYIASVQGSTP---SPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEE 79 (150)
T ss_dssp ----CCCHHHHHHHHHHHHHHSC---SHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred hHHHHHHcChHHHHHHHHHHhcc---cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Confidence 45566778899999999888753 3343 345567889999999999999999988 4455 6788899999999999
Q ss_pred CHHHHHHHHHHHHccCCCCCcchHHHHHHHhhcCChHHHHHH-HHHhhhCCCccCCccceeeeCCeeeeeccccCCCchH
Q 007808 479 NVELAELALERLTELEPKNPANFVMLSNIYGDLGRWKDVARI-KVAMRDTGFKKLPGCSSIEVNEVVMLGCLSRELDRKS 557 (589)
Q Consensus 479 ~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 557 (589)
++++|+..|+++++++|+++.++..++.+|.+.|++++|.+. ++++. +++|+++.
T Consensus 80 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al------------------------~l~P~~~~ 135 (150)
T 4ga2_A 80 NTDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAA------------------------KLFPGSPA 135 (150)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHH------------------------HHSTTCHH
T ss_pred chHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHH------------------------HhCcCCHH
Confidence 999999999999999999999999999999999999887765 57765 79999999
Q ss_pred HHHHHHHHHHHcccC
Q 007808 558 IVRAEANMIKLLPQN 572 (589)
Q Consensus 558 ~~~~l~~~~~~~~~~ 572 (589)
++...+.++...|+.
T Consensus 136 ~~~l~~~ll~~~G~d 150 (150)
T 4ga2_A 136 VYKLKEQLLDCEGED 150 (150)
T ss_dssp HHHHHHHHHHTCCCC
T ss_pred HHHHHHHHHHHhCcC
Confidence 999999999888863
No 74
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.46 E-value=6.9e-13 Score=138.47 Aligned_cols=161 Identities=16% Similarity=0.184 Sum_probs=142.3
Q ss_pred CcchHHHHHHHHHhCCChHHHHHHHHHHHHCCCCC-CHhHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC-hHHHHH
Q 007808 360 DLITWNTIISGLAMHGRGAGALSLFHEMKNAGEMP-DGITFIGILCACTHMGLVEEGLSYFQSMAMDYSIVPQ-IEHYGC 437 (589)
Q Consensus 360 ~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~~ 437 (589)
+..+|+.|...|.+.|++++|++.|++.++. .| +...+..+..+|.+.|++++|++.|+++++. .|+ ...|..
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l--~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l---~P~~~~a~~n 82 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALEV--FPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI---SPTFADAYSN 82 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHH
Confidence 3457888889999999999999999999884 56 4678889999999999999999999998753 354 778999
Q ss_pred HHHHHHhcCCHHHHHHHHhhC-CCCC-CHHHHHHHHHHHhcCCCHHHHHHHHHHHHccCCCCCcchHHHHHHHhhcCChH
Q 007808 438 MVDLLARAGRLAEAVDFVKRM-PIEA-DAVIWANLLGSCRVYKNVELAELALERLTELEPKNPANFVMLSNIYGDLGRWK 515 (589)
Q Consensus 438 l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 515 (589)
+..+|.+.|++++|++.|+++ .+.| +...+..+..+|...|++++|++.|+++++++|+++.++..++.+|...|+++
T Consensus 83 Lg~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~ 162 (723)
T 4gyw_A 83 MGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWT 162 (723)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCT
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHH
Confidence 999999999999999999987 4455 57789999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhh
Q 007808 516 DVARIKVAMR 525 (589)
Q Consensus 516 ~A~~~~~~~~ 525 (589)
+|.+.++++.
T Consensus 163 ~A~~~~~kal 172 (723)
T 4gyw_A 163 DYDERMKKLV 172 (723)
T ss_dssp THHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999998875
No 75
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.45 E-value=1.1e-11 Score=117.11 Aligned_cols=245 Identities=7% Similarity=-0.015 Sum_probs=187.6
Q ss_pred hHHHHHHHHHHHcCCCCChhHHHHHHHHHH-------hcCCh-------HHHHHHHhhCCC---C-CcchHHHHHHHHHh
Q 007808 312 DFSKWVHVYAEYNGYQGNVCVGNALIDMYA-------KCGII-------ENAVDVFNSMDT---K-DLITWNTIISGLAM 373 (589)
Q Consensus 312 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-------~~g~~-------~~A~~~~~~~~~---~-~~~~~~~l~~~~~~ 373 (589)
+.|...|++++... +.+...|..++..+. +.|++ ++|..+|++... | +...|..++..+.+
T Consensus 33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~ 111 (308)
T 2ond_A 33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 111 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence 57778888888764 667888888888776 35886 899999997754 3 45689999999999
Q ss_pred CCChHHHHHHHHHHHHCCCCCCH-h-HHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHH-hcCCHHH
Q 007808 374 HGRGAGALSLFHEMKNAGEMPDG-I-TFIGILCACTHMGLVEEGLSYFQSMAMDYSIVPQIEHYGCMVDLLA-RAGRLAE 450 (589)
Q Consensus 374 ~~~~~~A~~~~~~m~~~~~~p~~-~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~ 450 (589)
.|++++|..+|+++.+ +.|+. . .|..++..+.+.|++++|..+|+++++. .+++...|...+.... ..|++++
T Consensus 112 ~~~~~~A~~~~~~al~--~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--~p~~~~~~~~~a~~~~~~~~~~~~ 187 (308)
T 2ond_A 112 RMKYEKVHSIYNRLLA--IEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARED--ARTRHHVYVTAALMEYYCSKDKSV 187 (308)
T ss_dssp TTCHHHHHHHHHHHHT--SSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTS--TTCCTHHHHHHHHHHHHTSCCHHH
T ss_pred cCCHHHHHHHHHHHHh--ccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHHcCCHHH
Confidence 9999999999999998 46643 3 7888999999999999999999999752 2334555554443322 3799999
Q ss_pred HHHHHhhC-CCCC-CHHHHHHHHHHHhcCCCHHHHHHHHHHHHcc---CCC-CCcchHHHHHHHhhcCChHHHHHHHHHh
Q 007808 451 AVDFVKRM-PIEA-DAVIWANLLGSCRVYKNVELAELALERLTEL---EPK-NPANFVMLSNIYGDLGRWKDVARIKVAM 524 (589)
Q Consensus 451 A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 524 (589)
|.++|+++ ...| +...|..++..+.+.|++++|..+|+++++. .|+ +...|..++..+.+.|++++|..+++++
T Consensus 188 A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a 267 (308)
T 2ond_A 188 AFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRR 267 (308)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 99999988 2333 6788888899999999999999999999995 453 5668899999999999999999999998
Q ss_pred hhCCCccCCccceeeeCCeeee-eccccCCCchHHHHHHHH
Q 007808 525 RDTGFKKLPGCSSIEVNEVVML-GCLSRELDRKSIVRAEAN 564 (589)
Q Consensus 525 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~p~~~~~~~~l~~ 564 (589)
.+.......... + ...... ..+.++|+++..+..||.
T Consensus 268 ~~~~p~~~~~~~-~--~~~~~r~~~l~~~P~~~~~ln~lgY 305 (308)
T 2ond_A 268 FTAFREEYEGKE-T--ALLVDRYKFMDLYPCSASELKALGY 305 (308)
T ss_dssp HHHTTTTTSSCH-H--HHHHTTTCBTTBCSSCHHHHHTTTC
T ss_pred HHHcccccccch-H--HHHHHHHHhcccCCCCHHHHHhcCC
Confidence 643321111100 0 000111 166899999999998875
No 76
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.43 E-value=2e-13 Score=129.37 Aligned_cols=235 Identities=13% Similarity=0.088 Sum_probs=127.7
Q ss_pred chhHHHHHHHHHhCCChHHHHHHHHHHHHc-------CCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHc------C
Q 007808 259 VFSWNGLIGGYANNGLFFEVLDAFKRMLTE-------GRVFPNDATIVTVLSACARLGALDFSKWVHVYAEYN------G 325 (589)
Q Consensus 259 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-------~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~ 325 (589)
..++..+...+...|++++|+.+++++.+. . .+.....+..+...+...|++++|...+.++.+. +
T Consensus 27 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 105 (311)
T 3nf1_A 27 LRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHD-HPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGK 105 (311)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSS-SHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCC
Confidence 355777778888888888888888887763 1 1233445666667777777777777777666543 1
Q ss_pred C-CCChhHHHHHHHHHHhcCChHHHHHHHhhCCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHHC------CCCC-CHh
Q 007808 326 Y-QGNVCVGNALIDMYAKCGIIENAVDVFNSMDTKDLITWNTIISGLAMHGRGAGALSLFHEMKNA------GEMP-DGI 397 (589)
Q Consensus 326 ~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~------~~~p-~~~ 397 (589)
. +..... +..+...|...|++++|+..++++.+. +-.| ...
T Consensus 106 ~~~~~~~~-------------------------------~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~ 154 (311)
T 3nf1_A 106 DHPAVAAT-------------------------------LNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAK 154 (311)
T ss_dssp TCHHHHHH-------------------------------HHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred CChHHHHH-------------------------------HHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHH
Confidence 1 112233 444444455555555555555554432 1112 223
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHhHHhc-----CCCC-ChHHHHHHHHHHHhcCCHHHHHHHHhhCC----------CC
Q 007808 398 TFIGILCACTHMGLVEEGLSYFQSMAMDY-----SIVP-QIEHYGCMVDLLARAGRLAEAVDFVKRMP----------IE 461 (589)
Q Consensus 398 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-----~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~----------~~ 461 (589)
.+..+...+...|++++|.++++++.... +..| ....+..+..+|...|++++|.+.++++. ..
T Consensus 155 ~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 234 (311)
T 3nf1_A 155 QLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVD 234 (311)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCC
Confidence 45555566666666666666666654320 0011 13445556666666666666666665541 01
Q ss_pred CC-------HHHHHHHHHHHhcCCCHHHHHHHHHHHHccCCCCCcchHHHHHHHhhcCChHHHHHHHHHhh
Q 007808 462 AD-------AVIWANLLGSCRVYKNVELAELALERLTELEPKNPANFVMLSNIYGDLGRWKDVARIKVAMR 525 (589)
Q Consensus 462 p~-------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 525 (589)
+. ...+......+...+.+.+|...++++....|..+.++..++.+|.+.|++++|.+++++..
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 305 (311)
T 3nf1_A 235 DENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAM 305 (311)
T ss_dssp ---CCHHHHHHHHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 11 11122222334455566667777777777777777888888888888888888888888774
No 77
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.40 E-value=6.3e-12 Score=108.82 Aligned_cols=158 Identities=13% Similarity=0.064 Sum_probs=95.5
Q ss_pred HHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHh
Q 007808 365 NTIISGLAMHGRGAGALSLFHEMKNAGEMPDGITFIGILCACTHMGLVEEGLSYFQSMAMDYSIVPQIEHYGCMVDLLAR 444 (589)
Q Consensus 365 ~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 444 (589)
..+...+...|++++|+..++++.+.. +.+...+..+...+...|++++|...++++... .+.+...+..++..|..
T Consensus 12 ~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~ 88 (186)
T 3as5_A 12 RDKGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLAD--APDNVKVATVLGLTYVQ 88 (186)
T ss_dssp HHHHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHH
Confidence 334444445555555555555544321 223444555555555556666666665555432 12234555556666666
Q ss_pred cCCHHHHHHHHhhC-C-CCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHccCCCCCcchHHHHHHHhhcCChHHHHHHHH
Q 007808 445 AGRLAEAVDFVKRM-P-IEADAVIWANLLGSCRVYKNVELAELALERLTELEPKNPANFVMLSNIYGDLGRWKDVARIKV 522 (589)
Q Consensus 445 ~g~~~~A~~~~~~~-~-~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 522 (589)
.|++++|.+.++++ . .+.+...+..+...+...|++++|...++++++..|.++..+..++.++...|++++|.+.++
T Consensus 89 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~ 168 (186)
T 3as5_A 89 VQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALPHFK 168 (186)
T ss_dssp HTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 66666666666655 1 223455666666777777777777777777777777777777777777777777777777777
Q ss_pred Hhh
Q 007808 523 AMR 525 (589)
Q Consensus 523 ~~~ 525 (589)
++.
T Consensus 169 ~~~ 171 (186)
T 3as5_A 169 KAN 171 (186)
T ss_dssp HHH
T ss_pred HHH
Confidence 764
No 78
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.39 E-value=1.7e-11 Score=112.94 Aligned_cols=209 Identities=11% Similarity=0.008 Sum_probs=133.4
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHhhCCC--C-C---cchHHHHHHHHHhCCChHHHHHHHHHHHHCCC-CCC-HhHHH
Q 007808 329 NVCVGNALIDMYAKCGIIENAVDVFNSMDT--K-D---LITWNTIISGLAMHGRGAGALSLFHEMKNAGE-MPD-GITFI 400 (589)
Q Consensus 329 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~---~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~-~p~-~~~~~ 400 (589)
+...+..+...+.+.|++++|...|+++.+ | + ...+..+..+|.+.|++++|+..|++..+... .|. ...+.
T Consensus 14 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~ 93 (261)
T 3qky_A 14 SPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEY 93 (261)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHH
Confidence 445555566666666666666666666552 2 2 34555566666666666666666666665311 111 23344
Q ss_pred HHHHHHhc--------cCcHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCCHHHHHHHH
Q 007808 401 GILCACTH--------MGLVEEGLSYFQSMAMDYSIVPQ-IEHYGCMVDLLARAGRLAEAVDFVKRMPIEADAVIWANLL 471 (589)
Q Consensus 401 ~l~~~~~~--------~g~~~~A~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~ 471 (589)
.+..++.. .|++++|...|++++... |+ ......+.......+.. ...+..+.
T Consensus 94 ~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~---p~~~~~~~a~~~~~~~~~~~---------------~~~~~~la 155 (261)
T 3qky_A 94 ERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRY---PNHELVDDATQKIRELRAKL---------------ARKQYEAA 155 (261)
T ss_dssp HHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHC---TTCTTHHHHHHHHHHHHHHH---------------HHHHHHHH
T ss_pred HHHHHHHHhcccccccchhHHHHHHHHHHHHHHC---cCchhHHHHHHHHHHHHHHH---------------HHHHHHHH
Confidence 55555555 666666666666665432 22 11111111111000000 01135567
Q ss_pred HHHhcCCCHHHHHHHHHHHHccCCCCC---cchHHHHHHHhhc----------CChHHHHHHHHHhhhCCCccCCcccee
Q 007808 472 GSCRVYKNVELAELALERLTELEPKNP---ANFVMLSNIYGDL----------GRWKDVARIKVAMRDTGFKKLPGCSSI 538 (589)
Q Consensus 472 ~~~~~~g~~~~A~~~~~~~~~~~p~~~---~~~~~l~~~~~~~----------g~~~~A~~~~~~~~~~~~~~~~~~~~~ 538 (589)
..|.+.|++++|+..|+++++..|+++ .++..++.+|... |++++|+..++++.
T Consensus 156 ~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~------------- 222 (261)
T 3qky_A 156 RLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLL------------- 222 (261)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHH-------------
T ss_pred HHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHH-------------
Confidence 889999999999999999999999854 4889999999977 89999999999986
Q ss_pred eeCCeeeeeccccCCCch---HHHHHHHHHHHHcccCCCCcchH
Q 007808 539 EVNEVVMLGCLSRELDRK---SIVRAEANMIKLLPQNNHPLTFI 579 (589)
Q Consensus 539 ~~~~~~~~~~~~~~p~~~---~~~~~l~~~~~~~~~~~~~~~~~ 579 (589)
+.+|+++ .+...++.++..+|+...++...
T Consensus 223 -----------~~~p~~~~~~~a~~~l~~~~~~~~~~~~~~~~~ 255 (261)
T 3qky_A 223 -----------QIFPDSPLLRTAEELYTRARQRLTELEGDASLA 255 (261)
T ss_dssp -----------HHCTTCTHHHHHHHHHHHHHHHHHHHHTCTTCC
T ss_pred -----------HHCCCChHHHHHHHHHHHHHHHHHHhhhhhHHh
Confidence 6778885 56677888998888887766543
No 79
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.39 E-value=1.9e-10 Score=112.11 Aligned_cols=260 Identities=15% Similarity=0.017 Sum_probs=163.0
Q ss_pred HHHHHHhCCChHHHHHHHHHHHHcCCCCCcHH----HHHHHHHHHHhcCChhHHHHHHHHHHHcCCC-CC----hhHHHH
Q 007808 265 LIGGYANNGLFFEVLDAFKRMLTEGRVFPNDA----TIVTVLSACARLGALDFSKWVHVYAEYNGYQ-GN----VCVGNA 335 (589)
Q Consensus 265 l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~----~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~ 335 (589)
....+...|++++|...+++..... ...+.. .+..+...+...|+++.|...+.+....... .+ ...+..
T Consensus 20 ~a~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 98 (373)
T 1hz4_A 20 RAQVAINDGNPDEAERLAKLALEEL-PPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQ 98 (373)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTC-CTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHcC-CCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence 3444556677777777777766643 111211 3444555566677777777777665542110 11 123455
Q ss_pred HHHHHHhcCChHHHHHHHhhCCC----------C-CcchHHHHHHHHHhCCChHHHHHHHHHHHHCCCC--C--CHhHHH
Q 007808 336 LIDMYAKCGIIENAVDVFNSMDT----------K-DLITWNTIISGLAMHGRGAGALSLFHEMKNAGEM--P--DGITFI 400 (589)
Q Consensus 336 l~~~~~~~g~~~~A~~~~~~~~~----------~-~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~--p--~~~~~~ 400 (589)
+...+...|++++|...+++... + ....+..+...+...|++++|...+++....... + ...++.
T Consensus 99 la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 178 (373)
T 1hz4_A 99 QSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLA 178 (373)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHH
Confidence 66677777777777777765531 1 1234556777788888888888888887763211 1 124566
Q ss_pred HHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHH-----HHHHHHHhcCCHHHHHHHHhhCC-CCCC-----HHHHHH
Q 007808 401 GILCACTHMGLVEEGLSYFQSMAMDYSIVPQIEHYG-----CMVDLLARAGRLAEAVDFVKRMP-IEAD-----AVIWAN 469 (589)
Q Consensus 401 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~-----~l~~~~~~~g~~~~A~~~~~~~~-~~p~-----~~~~~~ 469 (589)
.+...+...|++++|...+++......-......+. ..+..+...|++++|...+++.. ..|. ...+..
T Consensus 179 ~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~ 258 (373)
T 1hz4_A 179 MLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRN 258 (373)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHH
Confidence 677778888888888888887754321111111121 23344778888888888888872 2221 234556
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHccCCCC------CcchHHHHHHHhhcCChHHHHHHHHHhh
Q 007808 470 LLGSCRVYKNVELAELALERLTELEPKN------PANFVMLSNIYGDLGRWKDVARIKVAMR 525 (589)
Q Consensus 470 l~~~~~~~g~~~~A~~~~~~~~~~~p~~------~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 525 (589)
+...+...|++++|...++++++..+.. ...+..++.++...|++++|...+++..
T Consensus 259 la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al 320 (373)
T 1hz4_A 259 IARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDAL 320 (373)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 6677888889999988888887754321 1366777888888899999888888775
No 80
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.38 E-value=1.1e-09 Score=113.07 Aligned_cols=430 Identities=10% Similarity=0.031 Sum_probs=273.8
Q ss_pred ChhHHHHHHHHhhhCCCCCCcccHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchHHHhHHHHHHHcCCC---hHHHHH
Q 007808 80 FHRTVVVLFTQMKKLDAMPNCFTFPIVLKSCVKINALREGEELHCLVLKNGFRANIFVGTALIELYSTGKA---IEAAYK 156 (589)
Q Consensus 80 ~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~---~~~A~~ 156 (589)
...+.+..|++....+ +-|..+|..++..+...+.++.+..+|+.++.. ++.+...|...+..-.+.|+ ++.+..
T Consensus 47 ~~~d~i~~lE~~l~~n-p~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~-fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~ 124 (679)
T 4e6h_A 47 DESDVIGKLNDMIEEQ-PTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDR-FPLMANIWCMRLSLEFDKMEELDAAVIEP 124 (679)
T ss_dssp CCSCHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHTC--CCCHHHHHH
T ss_pred CCHHHHHHHHHHHHHC-cCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHhhCCcchHHHHHH
Confidence 3455566666666655 468889999999998889999999999999987 56677788888888888888 999999
Q ss_pred HHccCCC-----CCeehHHHHHHHHHhCCCH--------HHHHHHHHhCC------CC-ChhHHHHHHHHHhc-------
Q 007808 157 VFGEMDE-----RNVVVWTSMINGYISCGDI--------VSARCLFELAP------ER-DVILWNTIVSGYID------- 209 (589)
Q Consensus 157 ~~~~~~~-----~~~~~~~~l~~~~~~~g~~--------~~a~~~~~~~~------~~-~~~~~~~l~~~~~~------- 209 (589)
+|++... +++..|...+.-..+.++. +...++|+... ++ +...|...+.....
T Consensus 125 lfeRal~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~ 204 (679)
T 4e6h_A 125 VLARCLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKF 204 (679)
T ss_dssp HHHHHTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHH
T ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcH
Confidence 9998865 5666777777666555543 22335555421 22 33456555554332
Q ss_pred --CCChHHHHHHhcccCC-CChhhHHHHHHHHHhcCCHHHHHHHHhhCCCCCchhHHHHHHHHHhCCChHHHHHHHHHHH
Q 007808 210 --VRNMIEARKLFDQMPK-KDVISWNTMLSGYANNGDVEECKRLFEEMPERNVFSWNGLIGGYANNGLFFEVLDAFKRML 286 (589)
Q Consensus 210 --~g~~~~a~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 286 (589)
.++++.+.++|++++. |... +..+-..|.. ++.. + +..+...++.- ...+++.|...+.++.
T Consensus 205 eeq~~~~~~R~iy~raL~iP~~~-~~~~w~~Y~~---fe~~---~------~~~~a~~~~~e--~~~~y~~Ar~~~~e~~ 269 (679)
T 4e6h_A 205 EEQQRVQYIRKLYKTLLCQPMDC-LESMWQRYTQ---WEQD---V------NQLTARRHIGE--LSAQYMNARSLYQDWL 269 (679)
T ss_dssp HHHHHHHHHHHHHHHHTTSCCSS-HHHHHHHHHH---HHHH---H------CTTTHHHHHHH--HHHHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHhCccHH-HHHHHHHHHH---HHHh---c------CcchHHHHHHH--hhHHHHHHHHHHHHHH
Confidence 2345566666666654 2211 1111111110 0000 0 00000001100 0112333444443322
Q ss_pred Hc--C--C-CC-----------C-----c---HHHHHHHHHHHHhcC-------ChhHHHHHHHHHHHcCCCCChhHHHH
Q 007808 287 TE--G--R-VF-----------P-----N---DATIVTVLSACARLG-------ALDFSKWVHVYAEYNGYQGNVCVGNA 335 (589)
Q Consensus 287 ~~--~--~-~~-----------p-----~---~~~~~~l~~~~~~~~-------~~~~a~~~~~~~~~~~~~~~~~~~~~ 335 (589)
.. + . ++ | + ...|...+.---..+ ..+.+..+|++++.. ++....+|..
T Consensus 270 ~~~~~l~r~~p~~~~~~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~-~p~~~~lW~~ 348 (679)
T 4e6h_A 270 NITKGLKRNLPITLNQATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQH-VCFAPEIWFN 348 (679)
T ss_dssp HHTTTCCCCCCSSSTTCCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHH-TTTCHHHHHH
T ss_pred HHHHhHhhccccccccchhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHH-cCCCHHHHHH
Confidence 11 0 0 00 1 1 122333333222221 123455678887776 3667888888
Q ss_pred HHHHHHhcCChHHHH-HHHhhCCC---CCcchHHHHHHHHHhCCChHHHHHHHHHHHHCC---------CCCC-------
Q 007808 336 LIDMYAKCGIIENAV-DVFNSMDT---KDLITWNTIISGLAMHGRGAGALSLFHEMKNAG---------EMPD------- 395 (589)
Q Consensus 336 l~~~~~~~g~~~~A~-~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~---------~~p~------- 395 (589)
.+..+...|+.++|. ++|++... .+...|...+....+.|++++|.++|+++.... -.|+
T Consensus 349 ya~~~~~~~~~~~a~r~il~rAi~~~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~ 428 (679)
T 4e6h_A 349 MANYQGEKNTDSTVITKYLKLGQQCIPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQ 428 (679)
T ss_dssp HHHHHHHHSCCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHH
T ss_pred HHHHHHhcCcHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhh
Confidence 899888999999996 99987763 355567778888889999999999999988631 0132
Q ss_pred -----HhHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcC-CHHHHHHHHhhC--CCCCCHHHH
Q 007808 396 -----GITFIGILCACTHMGLVEEGLSYFQSMAMDYSIVPQIEHYGCMVDLLARAG-RLAEAVDFVKRM--PIEADAVIW 467 (589)
Q Consensus 396 -----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~--~~~p~~~~~ 467 (589)
...|...+....+.|+.+.|.++|.++++.. -.+....|...+..-.+.+ +.+.|.++|+.. ..+-+...|
T Consensus 429 ~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~-~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~~~~~w 507 (679)
T 4e6h_A 429 LKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLK-KLVTPDIYLENAYIEYHISKDTKTACKVLELGLKYFATDGEYI 507 (679)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTG-GGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTCHHHH
T ss_pred hccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc-CCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCchHHH
Confidence 2357777777788899999999999997641 1122344544444444444 589999999987 233356667
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHccCCC---CCcchHHHHHHHhhcCChHHHHHHHHHhhhCC
Q 007808 468 ANLLGSCRVYKNVELAELALERLTELEPK---NPANFVMLSNIYGDLGRWKDVARIKVAMRDTG 528 (589)
Q Consensus 468 ~~l~~~~~~~g~~~~A~~~~~~~~~~~p~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 528 (589)
...+......|+.+.|..+|++++...|+ ....|..++..-.+.|+.+.+.++.+++.+.-
T Consensus 508 ~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~ 571 (679)
T 4e6h_A 508 NKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKF 571 (679)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHS
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 78888788889999999999999998873 44678888888889999999999999997544
No 81
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.38 E-value=7.7e-13 Score=125.36 Aligned_cols=221 Identities=13% Similarity=0.070 Sum_probs=153.7
Q ss_pred chHHHHHHHHHhCCChHHHHHHHHHHHHC-------CCCCCHhHHHHHHHHHhccCcHHHHHHHHHHhHHhc-----CC-
Q 007808 362 ITWNTIISGLAMHGRGAGALSLFHEMKNA-------GEMPDGITFIGILCACTHMGLVEEGLSYFQSMAMDY-----SI- 428 (589)
Q Consensus 362 ~~~~~l~~~~~~~~~~~~A~~~~~~m~~~-------~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-----~~- 428 (589)
.++..+...+...|++++|+.+++++.+. ........+..+...+...|++++|...++++.... +.
T Consensus 28 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 107 (311)
T 3nf1_A 28 RTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDH 107 (311)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCC
Confidence 45666777777778888888877777652 112234567777788888888888888888776531 11
Q ss_pred CCChHHHHHHHHHHHhcCCHHHHHHHHhhCC-C--------CC-CHHHHHHHHHHHhcCCCHHHHHHHHHHHHcc-----
Q 007808 429 VPQIEHYGCMVDLLARAGRLAEAVDFVKRMP-I--------EA-DAVIWANLLGSCRVYKNVELAELALERLTEL----- 493 (589)
Q Consensus 429 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~--------~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----- 493 (589)
+.....+..+...|...|++++|++.++++. . .| ....+..+...+...|++++|++.+++++++
T Consensus 108 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~ 187 (311)
T 3nf1_A 108 PAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKL 187 (311)
T ss_dssp HHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTS
T ss_pred hHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHh
Confidence 2235667788888889999999888888762 1 12 2455677778899999999999999999987
Q ss_pred ---CCCCCcchHHHHHHHhhcCChHHHHHHHHHhhhCC-------CccCCccce----------------eeeC--Ceee
Q 007808 494 ---EPKNPANFVMLSNIYGDLGRWKDVARIKVAMRDTG-------FKKLPGCSS----------------IEVN--EVVM 545 (589)
Q Consensus 494 ---~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-------~~~~~~~~~----------------~~~~--~~~~ 545 (589)
.|....++..++.+|...|++++|++.++++.+.. ..+.....+ .... ....
T Consensus 188 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 267 (311)
T 3nf1_A 188 GPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGWY 267 (311)
T ss_dssp CTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCCCC---
T ss_pred CCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHHHH
Confidence 56666789999999999999999999999986421 111110000 0000 0111
Q ss_pred eeccccCCCchHHHHHHHHHHHHcccCCCCcchHhhh
Q 007808 546 LGCLSRELDRKSIVRAEANMIKLLPQNNHPLTFIVVI 582 (589)
Q Consensus 546 ~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 582 (589)
..+...+|+.+.++..+|.+|...|+.++|+.+....
T Consensus 268 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 304 (311)
T 3nf1_A 268 KACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAA 304 (311)
T ss_dssp ------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred hhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 1155678999999999999999999999888877644
No 82
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.37 E-value=1.8e-11 Score=110.19 Aligned_cols=205 Identities=8% Similarity=-0.016 Sum_probs=157.9
Q ss_pred CcHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHhhCCC---CCcchHHHHHH
Q 007808 293 PNDATIVTVLSACARLGALDFSKWVHVYAEYNGYQGNVCVGNALIDMYAKCGIIENAVDVFNSMDT---KDLITWNTIIS 369 (589)
Q Consensus 293 p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~ 369 (589)
.|+..+......+...|++++|...+..+.+...+++...+..+..++...|++++|++.|++..+ .+...|..+..
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 84 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKSA 84 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHHH
Confidence 456788888889999999999999999999887546777777799999999999999999998763 35567888999
Q ss_pred HHHhCCChHHHHHHHHHHHHCCCCCC-H-------hHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC---hHHHHHH
Q 007808 370 GLAMHGRGAGALSLFHEMKNAGEMPD-G-------ITFIGILCACTHMGLVEEGLSYFQSMAMDYSIVPQ---IEHYGCM 438 (589)
Q Consensus 370 ~~~~~~~~~~A~~~~~~m~~~~~~p~-~-------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~---~~~~~~l 438 (589)
+|...|++++|+..+++..+. .|+ . ..|..+...+...|++++|++.|+++++ ..|+ ...+..+
T Consensus 85 ~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~---~~p~~~~~~~~~~l 159 (228)
T 4i17_A 85 AYRDMKNNQEYIATLTEGIKA--VPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATD---VTSKKWKTDALYSL 159 (228)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTT---SSCHHHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHh---cCCCcccHHHHHHH
Confidence 999999999999999999884 443 4 3477778888899999999999998874 4455 5677778
Q ss_pred HHHHHhcCCHHHHHHHHhhCC--CCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHccCCCCCcchHHHHHHHh
Q 007808 439 VDLLARAGRLAEAVDFVKRMP--IEADAVIWANLLGSCRVYKNVELAELALERLTELEPKNPANFVMLSNIYG 509 (589)
Q Consensus 439 ~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 509 (589)
..+|...|+. .++++. ...+...+.... ....+.+++|...++++++++|+++.+...+..+..
T Consensus 160 ~~~~~~~~~~-----~~~~a~~~~~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~i~~ 225 (228)
T 4i17_A 160 GVLFYNNGAD-----VLRKATPLASSNKEKYASEK--AKADAAFKKAVDYLGEAVTLSPNRTEIKQMQDQVKA 225 (228)
T ss_dssp HHHHHHHHHH-----HHHHHGGGTTTCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHT
T ss_pred HHHHHHHHHH-----HHHHHHhcccCCHHHHHHHH--HHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHH
Confidence 8888766543 233321 122344444333 234567899999999999999999887777766643
No 83
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.35 E-value=5.3e-11 Score=108.87 Aligned_cols=251 Identities=11% Similarity=0.031 Sum_probs=173.7
Q ss_pred HHHHHhCCChHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCC
Q 007808 266 IGGYANNGLFFEVLDAFKRMLTEGRVFPNDATIVTVLSACARLGALDFSKWVHVYAEYNGYQGNVCVGNALIDMYAKCGI 345 (589)
Q Consensus 266 ~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 345 (589)
++-..-.|.+..++.-...+.. ..++ ....-+.+++...|+.... ..-.|....+..+...+ ..+
T Consensus 20 ikn~fy~G~yq~~i~e~~~~~~---~~~~-~~~~~~~Rs~iAlg~~~~~---------~~~~~~~~a~~~la~~~-~~~- 84 (310)
T 3mv2_B 20 IKQNYYTGNFVQCLQEIEKFSK---VTDN-TLLFYKAKTLLALGQYQSQ---------DPTSKLGKVLDLYVQFL-DTK- 84 (310)
T ss_dssp HHHHHTTTCHHHHTHHHHTSSC---CCCH-HHHHHHHHHHHHTTCCCCC---------CSSSTTHHHHHHHHHHH-TTT-
T ss_pred HHHHHHhhHHHHHHHHHHhcCc---cchH-HHHHHHHHHHHHcCCCccC---------CCCCHHHHHHHHHHHHh-ccc-
Confidence 3445566777777763322211 1222 2333445666666665531 11223333444343333 322
Q ss_pred hHHHHHHHhhCCC---CCcchHHHHHHHHHhCCChHHHHHHHHHHHHCCCCC-CHhHHHHHHHHHhccCcHHHHHHHHHH
Q 007808 346 IENAVDVFNSMDT---KDLITWNTIISGLAMHGRGAGALSLFHEMKNAGEMP-DGITFIGILCACTHMGLVEEGLSYFQS 421 (589)
Q Consensus 346 ~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~ 421 (589)
|+..|++... ++..++..+..++...|++++|++++.+.+..|..+ +...+..++..+.+.|+.+.|.+.+++
T Consensus 85 ---a~~~l~~l~~~~~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~ 161 (310)
T 3mv2_B 85 ---NIEELENLLKDKQNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDN 161 (310)
T ss_dssp ---CCHHHHHTTTTSCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred ---HHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 6677776653 445556678888999999999999999987755322 456677888899999999999999999
Q ss_pred hHHhcCCCC-----ChHHHHHHHHH--HHhcC--CHHHHHHHHhhC-CCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Q 007808 422 MAMDYSIVP-----QIEHYGCMVDL--LARAG--RLAEAVDFVKRM-PIEADAVIWANLLGSCRVYKNVELAELALERLT 491 (589)
Q Consensus 422 ~~~~~~~~~-----~~~~~~~l~~~--~~~~g--~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 491 (589)
|.+ ..| +..+...|+.+ ....| ++.+|..+|+++ ...|+..+...++.++.+.|++++|++.++.+.
T Consensus 162 ~~~---~~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~ 238 (310)
T 3mv2_B 162 YTN---AIEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTFPTWKTQLGLLNLHLQQRNIAEAQGIVELLL 238 (310)
T ss_dssp HHH---HSCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHh---cCccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCCcccHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 964 346 24555555555 33334 999999999998 445663344445558899999999999999888
Q ss_pred cc----------CCCCCcchHHHHHHHhhcCChHHHHHHHHHhhhCCCccCCccceeeeCCeeeeeccccCCCchHHHHH
Q 007808 492 EL----------EPKNPANFVMLSNIYGDLGRWKDVARIKVAMRDTGFKKLPGCSSIEVNEVVMLGCLSRELDRKSIVRA 561 (589)
Q Consensus 492 ~~----------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~ 561 (589)
+. +|+++.++.+++.+....|+ +|.++++++. +.+|++|-+.+.
T Consensus 239 ~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~------------------------~~~P~hp~i~d~ 292 (310)
T 3mv2_B 239 SDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLV------------------------KLDHEHAFIKHH 292 (310)
T ss_dssp SHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHH------------------------HTTCCCHHHHHH
T ss_pred HhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHH------------------------HhCCCChHHHHH
Confidence 76 58899999899888888887 8999999997 789999998876
Q ss_pred HH
Q 007808 562 EA 563 (589)
Q Consensus 562 l~ 563 (589)
-.
T Consensus 293 ~~ 294 (310)
T 3mv2_B 293 QE 294 (310)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 84
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.35 E-value=3.3e-11 Score=117.64 Aligned_cols=222 Identities=8% Similarity=-0.040 Sum_probs=137.5
Q ss_pred HHHHHHhcCChHHHHHHHhhCCC-----CC----cchHHHHHHHHHhCCChHHHHHHHHHHHHCC--C---CC-CHhHHH
Q 007808 336 LIDMYAKCGIIENAVDVFNSMDT-----KD----LITWNTIISGLAMHGRGAGALSLFHEMKNAG--E---MP-DGITFI 400 (589)
Q Consensus 336 l~~~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~--~---~p-~~~~~~ 400 (589)
....+...|++++|...|++..+ ++ ..++..+...|...|++++|+..+++..+.. . .+ ...++.
T Consensus 107 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 186 (378)
T 3q15_A 107 RGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLF 186 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHH
T ss_pred HHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHH
Confidence 34445566777777776665542 11 2356666777777777777777777765420 0 11 133566
Q ss_pred HHHHHHhccCcHHHHHHHHHHhHHhcCCCCC----hHHHHHHHHHHHhcCCHHHHHHHHhhC-C-----CCCC-HHHHHH
Q 007808 401 GILCACTHMGLVEEGLSYFQSMAMDYSIVPQ----IEHYGCMVDLLARAGRLAEAVDFVKRM-P-----IEAD-AVIWAN 469 (589)
Q Consensus 401 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~-~-----~~p~-~~~~~~ 469 (589)
.+..+|...|++++|.+.++++..-..-.++ ..++..++.+|...|++++|++.+++. . ..|. ..++..
T Consensus 187 ~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 266 (378)
T 3q15_A 187 VIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFG 266 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHH
Confidence 6777777777777777777766542111111 345666777777777777777777765 1 2332 345566
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHccCCC-----CCcchHHHHHHHhhcCC---hHHHHHHHHHhhhCCCccCCccceeeeC
Q 007808 470 LLGSCRVYKNVELAELALERLTELEPK-----NPANFVMLSNIYGDLGR---WKDVARIKVAMRDTGFKKLPGCSSIEVN 541 (589)
Q Consensus 470 l~~~~~~~g~~~~A~~~~~~~~~~~p~-----~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 541 (589)
+...+.+.|++++|...+++++++.+. ....+..+..++...|+ +++|+..+++.
T Consensus 267 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~----------------- 329 (378)
T 3q15_A 267 LSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKK----------------- 329 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHT-----------------
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhC-----------------
Confidence 667777777888888877777775332 12234556666667777 66676666654
Q ss_pred CeeeeeccccCCCchHHHHHHHHHHHHcccCCCCcchHhhh
Q 007808 542 EVVMLGCLSRELDRKSIVRAEANMIKLLPQNNHPLTFIVVI 582 (589)
Q Consensus 542 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 582 (589)
...|+...++..+|.+|...|+.++|+.+....
T Consensus 330 --------~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~a 362 (378)
T 3q15_A 330 --------NLHAYIEACARSAAAVFESSCHFEQAAAFYRKV 362 (378)
T ss_dssp --------TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred --------CChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 244566677777888888887777777665543
No 85
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.35 E-value=5e-11 Score=103.07 Aligned_cols=169 Identities=12% Similarity=-0.003 Sum_probs=142.8
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHhhCCCC---CcchHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHH
Q 007808 330 VCVGNALIDMYAKCGIIENAVDVFNSMDTK---DLITWNTIISGLAMHGRGAGALSLFHEMKNAGEMPDGITFIGILCAC 406 (589)
Q Consensus 330 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~ 406 (589)
...+..+...+...|++++|...|+++.+. +...+..+...+...|++++|...++++.+.. +.+...+..+...+
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~ 86 (186)
T 3as5_A 8 QVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTY 86 (186)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHH
Confidence 345667788888999999999999988743 56678889999999999999999999998852 34677888889999
Q ss_pred hccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHhhC-CC-CCCHHHHHHHHHHHhcCCCHHHHH
Q 007808 407 THMGLVEEGLSYFQSMAMDYSIVPQIEHYGCMVDLLARAGRLAEAVDFVKRM-PI-EADAVIWANLLGSCRVYKNVELAE 484 (589)
Q Consensus 407 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~~~g~~~~A~ 484 (589)
...|++++|.+.++++... .+.+...+..++..|...|++++|.+.++++ .. +.+...+..+...+...|++++|.
T Consensus 87 ~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~ 164 (186)
T 3as5_A 87 VQVQKYDLAVPLLIKVAEA--NPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEAL 164 (186)
T ss_dssp HHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHhcCHHHHHHHHHHHHhc--CcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHH
Confidence 9999999999999998764 3456778888999999999999999999987 22 346778888889999999999999
Q ss_pred HHHHHHHccCCCCCcch
Q 007808 485 LALERLTELEPKNPANF 501 (589)
Q Consensus 485 ~~~~~~~~~~p~~~~~~ 501 (589)
..++++++..|+++...
T Consensus 165 ~~~~~~~~~~~~~~~~~ 181 (186)
T 3as5_A 165 PHFKKANELDEGASVEL 181 (186)
T ss_dssp HHHHHHHHHHHCCCGGG
T ss_pred HHHHHHHHcCCCchhhH
Confidence 99999999998866543
No 86
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.31 E-value=1.5e-10 Score=112.86 Aligned_cols=233 Identities=11% Similarity=-0.018 Sum_probs=112.5
Q ss_pred HHHHHHhCCChHHHHHHHHHHHHcCCCCCc----HHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCC-CC-hhHHHHHHH
Q 007808 265 LIGGYANNGLFFEVLDAFKRMLTEGRVFPN----DATIVTVLSACARLGALDFSKWVHVYAEYNGYQ-GN-VCVGNALID 338 (589)
Q Consensus 265 l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~-~~~~~~l~~ 338 (589)
....+...|++++|+..|+++.+.....++ ..++..+...+...|+++.|...+.++.+.... ++ ..
T Consensus 107 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~------- 179 (378)
T 3q15_A 107 RGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSI------- 179 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHH-------
T ss_pred HHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchh-------
Confidence 344456667777777777766553211122 234555555566666666666655554432100 00 00
Q ss_pred HHHhcCChHHHHHHHhhCCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHHC----CCCC-CHhHHHHHHHHHhccCcHH
Q 007808 339 MYAKCGIIENAVDVFNSMDTKDLITWNTIISGLAMHGRGAGALSLFHEMKNA----GEMP-DGITFIGILCACTHMGLVE 413 (589)
Q Consensus 339 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~----~~~p-~~~~~~~l~~~~~~~g~~~ 413 (589)
....+++.+..+|...|++++|++.+++..+. +-.+ ...++..+..+|...|+++
T Consensus 180 --------------------~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~ 239 (378)
T 3q15_A 180 --------------------RTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQ 239 (378)
T ss_dssp --------------------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHH
T ss_pred --------------------hHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHH
Confidence 00123344444555555555555555544431 1011 1224455555566666666
Q ss_pred HHHHHHHHhHHhc---CCCCChHHHHHHHHHHHhcCCHHHHHHHHhhC----CC--CCC-HHHHHHHHHHHhcCCC---H
Q 007808 414 EGLSYFQSMAMDY---SIVPQIEHYGCMVDLLARAGRLAEAVDFVKRM----PI--EAD-AVIWANLLGSCRVYKN---V 480 (589)
Q Consensus 414 ~A~~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~--~p~-~~~~~~l~~~~~~~g~---~ 480 (589)
+|...+++...-. +.+....++..++.+|.+.|++++|.+.+++. .. .|. ...+..+...+...|+ +
T Consensus 240 ~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~ 319 (378)
T 3q15_A 240 MAVEHFQKAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKI 319 (378)
T ss_dssp HHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHH
T ss_pred HHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHH
Confidence 6666665554310 11112445555666666666666666666554 10 121 2223333344555555 5
Q ss_pred HHHHHHHHHHHccCCCCCcchHHHHHHHhhcCChHHHHHHHHHhh
Q 007808 481 ELAELALERLTELEPKNPANFVMLSNIYGDLGRWKDVARIKVAMR 525 (589)
Q Consensus 481 ~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 525 (589)
.+|...+++. ...|.....+..++.+|...|++++|.+.+++..
T Consensus 320 ~~al~~~~~~-~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al 363 (378)
T 3q15_A 320 HDLLSYFEKK-NLHAYIEACARSAAAVFESSCHFEQAAAFYRKVL 363 (378)
T ss_dssp HHHHHHHHHT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHhC-CChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 5555555542 1222223455566666666666666666666553
No 87
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.31 E-value=2.6e-11 Score=113.48 Aligned_cols=170 Identities=12% Similarity=-0.006 Sum_probs=132.0
Q ss_pred ChHHHHHHHhhCCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHHC----CCCCC-HhHHHHHHHHHhccCcHHHHHHHH
Q 007808 345 IIENAVDVFNSMDTKDLITWNTIISGLAMHGRGAGALSLFHEMKNA----GEMPD-GITFIGILCACTHMGLVEEGLSYF 419 (589)
Q Consensus 345 ~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~----~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~ 419 (589)
++++|...|++. +..|...|++++|++.|++..+. |-.++ ..+|..+..+|...|++++|+..+
T Consensus 32 ~~~~A~~~~~~a-----------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~ 100 (292)
T 1qqe_A 32 KFEEAADLCVQA-----------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSL 100 (292)
T ss_dssp HHHHHHHHHHHH-----------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cHHHHHHHHHHH-----------HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 477777776653 55677788888888888877652 21122 457888889999999999999999
Q ss_pred HHhHHhcCCCCC----hHHHHHHHHHHHhc-CCHHHHHHHHhhC-CCCC---C----HHHHHHHHHHHhcCCCHHHHHHH
Q 007808 420 QSMAMDYSIVPQ----IEHYGCMVDLLARA-GRLAEAVDFVKRM-PIEA---D----AVIWANLLGSCRVYKNVELAELA 486 (589)
Q Consensus 420 ~~~~~~~~~~~~----~~~~~~l~~~~~~~-g~~~~A~~~~~~~-~~~p---~----~~~~~~l~~~~~~~g~~~~A~~~ 486 (589)
++.+.-..-..+ ..+++.+..+|... |++++|+..|++. .+.| + ..++..+...+...|++++|+..
T Consensus 101 ~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~ 180 (292)
T 1qqe_A 101 ENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDI 180 (292)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHH
Confidence 887653211112 35788899999996 9999999999887 2222 2 35677888999999999999999
Q ss_pred HHHHHccCCCCCc-------chHHHHHHHhhcCChHHHHHHHHHhh
Q 007808 487 LERLTELEPKNPA-------NFVMLSNIYGDLGRWKDVARIKVAMR 525 (589)
Q Consensus 487 ~~~~~~~~p~~~~-------~~~~l~~~~~~~g~~~~A~~~~~~~~ 525 (589)
|++++++.|++.. .+..++.++...|++++|+..+++..
T Consensus 181 ~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 226 (292)
T 1qqe_A 181 YSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQ 226 (292)
T ss_dssp HHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGG
T ss_pred HHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 9999999988665 46788999999999999999999985
No 88
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.31 E-value=1.7e-11 Score=114.38 Aligned_cols=161 Identities=9% Similarity=-0.031 Sum_probs=134.8
Q ss_pred CCCHhHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHhhC-CCCCCHHHHHHHH
Q 007808 393 MPDGITFIGILCACTHMGLVEEGLSYFQSMAMDYSIVPQIEHYGCMVDLLARAGRLAEAVDFVKRM-PIEADAVIWANLL 471 (589)
Q Consensus 393 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~ 471 (589)
+.+...+..+...+...|++++|...|+++.... +.+...+..+..+|.+.|++++|+..++++ ...|+........
T Consensus 114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~--P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~ 191 (287)
T 3qou_A 114 PREEELXAQQAMQLMQESNYTDALPLLXDAWQLS--NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVA 191 (287)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT--TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHH
T ss_pred CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC--CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHH
Confidence 3345567778888899999999999999987632 335678888999999999999999999998 4567665443333
Q ss_pred -HHHhcCCCHHHHHHHHHHHHccCCCCCcchHHHHHHHhhcCChHHHHHHHHHhhhCCCccCCccceeeeCCeeeeeccc
Q 007808 472 -GSCRVYKNVELAELALERLTELEPKNPANFVMLSNIYGDLGRWKDVARIKVAMRDTGFKKLPGCSSIEVNEVVMLGCLS 550 (589)
Q Consensus 472 -~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 550 (589)
..+...++.++|+..++++++.+|+++.++..++.+|...|++++|+..++++. +
T Consensus 192 ~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l------------------------~ 247 (287)
T 3qou_A 192 QIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHL------------------------R 247 (287)
T ss_dssp HHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH------------------------H
T ss_pred HHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHH------------------------h
Confidence 346677888889999999999999999999999999999999999999999986 7
Q ss_pred cCCCc--hHHHHHHHHHHHHcccCCCCcchH
Q 007808 551 RELDR--KSIVRAEANMIKLLPQNNHPLTFI 579 (589)
Q Consensus 551 ~~p~~--~~~~~~l~~~~~~~~~~~~~~~~~ 579 (589)
.+|++ +.++..|+.+|..+|+.++++...
T Consensus 248 ~~p~~~~~~a~~~l~~~~~~~g~~~~a~~~~ 278 (287)
T 3qou_A 248 XDLTAADGQTRXTFQEILAALGTGDALASXY 278 (287)
T ss_dssp HCTTGGGGHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred cccccccchHHHHHHHHHHHcCCCCcHHHHH
Confidence 88888 899999999999999988766543
No 89
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.30 E-value=2.8e-11 Score=113.30 Aligned_cols=218 Identities=11% Similarity=-0.005 Sum_probs=155.4
Q ss_pred ChhHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHhhCCC-------C--CcchHHHHHHHHHhCCChHHH
Q 007808 310 ALDFSKWVHVYAEYNGYQGNVCVGNALIDMYAKCGIIENAVDVFNSMDT-------K--DLITWNTIISGLAMHGRGAGA 380 (589)
Q Consensus 310 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-------~--~~~~~~~l~~~~~~~~~~~~A 380 (589)
++++|...+..+ +..|...|++++|.+.|.+... + ...+|+.+..+|...|++++|
T Consensus 32 ~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A 96 (292)
T 1qqe_A 32 KFEEAADLCVQA---------------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNA 96 (292)
T ss_dssp HHHHHHHHHHHH---------------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred cHHHHHHHHHHH---------------HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHH
Confidence 366777666655 3456778888888888876542 1 135788889999999999999
Q ss_pred HHHHHHHHHCCC---CCC--HhHHHHHHHHHhcc-CcHHHHHHHHHHhHHhcCCCCC----hHHHHHHHHHHHhcCCHHH
Q 007808 381 LSLFHEMKNAGE---MPD--GITFIGILCACTHM-GLVEEGLSYFQSMAMDYSIVPQ----IEHYGCMVDLLARAGRLAE 450 (589)
Q Consensus 381 ~~~~~~m~~~~~---~p~--~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~ 450 (589)
+..+++..+... .+. ..++..+...|... |++++|+..|++.+.-..-..+ ..++..++..|.+.|++++
T Consensus 97 ~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~ 176 (292)
T 1qqe_A 97 VDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIE 176 (292)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHH
Confidence 999998876211 111 34688888999996 9999999999998753211111 3568889999999999999
Q ss_pred HHHHHhhC-CCCCCH--------HHHHHHHHHHhcCCCHHHHHHHHHHHHccCCCCCcc-----hHHHHHHHh--hcCCh
Q 007808 451 AVDFVKRM-PIEADA--------VIWANLLGSCRVYKNVELAELALERLTELEPKNPAN-----FVMLSNIYG--DLGRW 514 (589)
Q Consensus 451 A~~~~~~~-~~~p~~--------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~-----~~~l~~~~~--~~g~~ 514 (589)
|+..|+++ ...|+. ..+..+..++...|++++|+..|+++++++|..... +..++..+. ..+++
T Consensus 177 A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~ 256 (292)
T 1qqe_A 177 ASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQL 256 (292)
T ss_dssp HHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTH
T ss_pred HHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHHH
Confidence 99999987 223321 256777788999999999999999999999986553 344566664 46789
Q ss_pred HHHHHHHHHhhhCCCccCCccceeeeCCeeeeeccccCCCchHHHHHHHHHH
Q 007808 515 KDVARIKVAMRDTGFKKLPGCSSIEVNEVVMLGCLSRELDRKSIVRAEANMI 566 (589)
Q Consensus 515 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~~ 566 (589)
++|+..++++. .++|.+..++..+....
T Consensus 257 ~~A~~~~~~~~------------------------~l~~~~~~~~~~~k~~~ 284 (292)
T 1qqe_A 257 SEHCKEFDNFM------------------------RLDKWKITILNKIKESI 284 (292)
T ss_dssp HHHHHHHTTSS------------------------CCCHHHHHHHHHHHHHH
T ss_pred HHHHHHhccCC------------------------ccHHHHHHHHHHHHHHh
Confidence 99999988774 56777766666555554
No 90
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=99.30 E-value=1.7e-11 Score=98.28 Aligned_cols=115 Identities=10% Similarity=0.115 Sum_probs=102.4
Q ss_pred CCCC-hHHHHHHHHHHHhcCCHHHHHHHHhhC-CCCC-CHHHHHHHHHHHhcCCCHHHHHHHHHHHHccCCCCCcchHHH
Q 007808 428 IVPQ-IEHYGCMVDLLARAGRLAEAVDFVKRM-PIEA-DAVIWANLLGSCRVYKNVELAELALERLTELEPKNPANFVML 504 (589)
Q Consensus 428 ~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l 504 (589)
+.|+ ...+...+..|.+.|++++|++.|+++ ...| +...|..+..++.+.|++++|+..++++++++|+++.+|..+
T Consensus 8 inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l 87 (126)
T 4gco_A 8 INPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRK 87 (126)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHH
Confidence 4454 456777889999999999999999987 3444 678888899999999999999999999999999999999999
Q ss_pred HHHHhhcCChHHHHHHHHHhhhCCCccCCccceeeeCCeeeeeccccCCCchHHHHHHHHHH
Q 007808 505 SNIYGDLGRWKDVARIKVAMRDTGFKKLPGCSSIEVNEVVMLGCLSRELDRKSIVRAEANMI 566 (589)
Q Consensus 505 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~~ 566 (589)
+.+|...|++++|++.+++.. +++|+++.++..|++++
T Consensus 88 g~~~~~~~~~~~A~~~~~~al------------------------~l~P~~~~a~~~l~~~l 125 (126)
T 4gco_A 88 AACLVAMREWSKAQRAYEDAL------------------------QVDPSNEEAREGVRNCL 125 (126)
T ss_dssp HHHHHHTTCHHHHHHHHHHHH------------------------HHCTTCHHHHHHHHHHC
T ss_pred HHHHHHCCCHHHHHHHHHHHH------------------------HHCcCCHHHHHHHHHhc
Confidence 999999999999999999986 89999999999998764
No 91
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.29 E-value=3.7e-10 Score=109.94 Aligned_cols=264 Identities=10% Similarity=-0.031 Sum_probs=189.9
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHcCCCCCh----hHHHHHHHHHHhcCChHHHHHHHhhCCC-----CCc----chHHH
Q 007808 300 TVLSACARLGALDFSKWVHVYAEYNGYQGNV----CVGNALIDMYAKCGIIENAVDVFNSMDT-----KDL----ITWNT 366 (589)
Q Consensus 300 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~----~~~~~ 366 (589)
.....+...|+++.|...+..........+. ..+..+...+...|++++|...+++... .+. .++..
T Consensus 19 ~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 98 (373)
T 1hz4_A 19 LRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQ 98 (373)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence 3444567889999999999998876532222 2466777888999999999999987652 122 23566
Q ss_pred HHHHHHhCCChHHHHHHHHHHHHC----CCC--CC-HhHHHHHHHHHhccCcHHHHHHHHHHhHHhcCC-CC--ChHHHH
Q 007808 367 IISGLAMHGRGAGALSLFHEMKNA----GEM--PD-GITFIGILCACTHMGLVEEGLSYFQSMAMDYSI-VP--QIEHYG 436 (589)
Q Consensus 367 l~~~~~~~~~~~~A~~~~~~m~~~----~~~--p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~--~~~~~~ 436 (589)
+...+...|++++|...+++..+. +.. |. ...+..+...+...|++++|...+++......- .+ ....+.
T Consensus 99 la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 178 (373)
T 1hz4_A 99 QSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLA 178 (373)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHH
Confidence 788899999999999999987752 222 32 345666788899999999999999988653221 11 235677
Q ss_pred HHHHHHHhcCCHHHHHHHHhhCC---CCC-CHHHHH-----HHHHHHhcCCCHHHHHHHHHHHHccCCCCCc----chHH
Q 007808 437 CMVDLLARAGRLAEAVDFVKRMP---IEA-DAVIWA-----NLLGSCRVYKNVELAELALERLTELEPKNPA----NFVM 503 (589)
Q Consensus 437 ~l~~~~~~~g~~~~A~~~~~~~~---~~p-~~~~~~-----~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~----~~~~ 503 (589)
.+...+...|++++|...+++.. ..+ ....+. ..+..+...|++++|...++++.+..|.++. .+..
T Consensus 179 ~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~ 258 (373)
T 1hz4_A 179 MLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRN 258 (373)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHH
Confidence 88899999999999999998761 111 111222 2234477999999999999999987765322 3568
Q ss_pred HHHHHhhcCChHHHHHHHHHhhhCCCccCCccceeeeCCeeeeeccccCCCchHHHHHHHHHHHHcccCCCCcchHhh
Q 007808 504 LSNIYGDLGRWKDVARIKVAMRDTGFKKLPGCSSIEVNEVVMLGCLSRELDRKSIVRAEANMIKLLPQNNHPLTFIVV 581 (589)
Q Consensus 504 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 581 (589)
++.++...|++++|...+++.....-. . ...++...++..++.++...|+.++|.+.+..
T Consensus 259 la~~~~~~g~~~~A~~~l~~a~~~~~~--~----------------~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~ 318 (373)
T 1hz4_A 259 IARAQILLGEFEPAEIVLEELNENARS--L----------------RLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLD 318 (373)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHH--T----------------TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHh--C----------------cchhhHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 899999999999999999988521100 0 01122335788899999999998888776554
No 92
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.27 E-value=6.6e-12 Score=116.96 Aligned_cols=203 Identities=11% Similarity=0.021 Sum_probs=95.6
Q ss_pred hHHHHHHHHHhCCChHHHHHHHHHHHHC------CCCC-CHhHHHHHHHHHhccCcHHHHHHHHHHhHHhc-----C-CC
Q 007808 363 TWNTIISGLAMHGRGAGALSLFHEMKNA------GEMP-DGITFIGILCACTHMGLVEEGLSYFQSMAMDY-----S-IV 429 (589)
Q Consensus 363 ~~~~l~~~~~~~~~~~~A~~~~~~m~~~------~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-----~-~~ 429 (589)
++..+...|...|++++|+..++++.+. +-.| ...++..+...+...|++++|...++++.... . .+
T Consensus 45 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 124 (283)
T 3edt_B 45 MLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHP 124 (283)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCCh
Confidence 4455555555555555555555555432 1112 22344445555555555555555555543321 0 01
Q ss_pred CChHHHHHHHHHHHhcCCHHHHHHHHhhC-CC--------CC-CHHHHHHHHHHHhcCCCHHHHHHHHHHHHcc------
Q 007808 430 PQIEHYGCMVDLLARAGRLAEAVDFVKRM-PI--------EA-DAVIWANLLGSCRVYKNVELAELALERLTEL------ 493 (589)
Q Consensus 430 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~--------~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~------ 493 (589)
.....+..+...|...|++++|++.++++ .. .| ....+..+...+...|++++|...+++++++
T Consensus 125 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~ 204 (283)
T 3edt_B 125 DVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEF 204 (283)
T ss_dssp HHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcC
Confidence 11334444445555555555555544443 11 11 1233344444445555555555555555442
Q ss_pred ---CCCCCcchHHHHHHHhhcCChHHHHHHHHHhhhCCCccCCccceeeeCCeeeeeccccCCCchHHHHHHHHHHHHcc
Q 007808 494 ---EPKNPANFVMLSNIYGDLGRWKDVARIKVAMRDTGFKKLPGCSSIEVNEVVMLGCLSRELDRKSIVRAEANMIKLLP 570 (589)
Q Consensus 494 ---~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~ 570 (589)
.|.....+..+...+...+....+..+.+.. .........+|+.+.++..+|.+|...|
T Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~la~~~~~~g 266 (283)
T 3edt_B 205 GSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYG------------------SWYKACKVDSPTVNTTLRSLGALYRRQG 266 (283)
T ss_dssp SSCCSSCCCHHHHHHHHHHTTCCCCC------------------------------CCCCCCHHHHHHHHHHHHHHHHTT
T ss_pred CCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHH------------------HHHHhcCCCCHHHHHHHHHHHHHHHHcC
Confidence 2222333333333333322222222111100 0011123467888999999999999999
Q ss_pred cCCCCcchHhhhh
Q 007808 571 QNNHPLTFIVVIF 583 (589)
Q Consensus 571 ~~~~~~~~~~~~~ 583 (589)
+.++|+.++....
T Consensus 267 ~~~~A~~~~~~al 279 (283)
T 3edt_B 267 KLEAAHTLEDCAS 279 (283)
T ss_dssp CHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHH
Confidence 9999988776543
No 93
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.26 E-value=1.4e-11 Score=129.44 Aligned_cols=171 Identities=8% Similarity=-0.071 Sum_probs=146.2
Q ss_pred HhCCChHHHHHHHHHHH--------HCCCCC-CHhHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHH
Q 007808 372 AMHGRGAGALSLFHEMK--------NAGEMP-DGITFIGILCACTHMGLVEEGLSYFQSMAMDYSIVPQIEHYGCMVDLL 442 (589)
Q Consensus 372 ~~~~~~~~A~~~~~~m~--------~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~ 442 (589)
...|++++|++.+++.. + ..| +...+..+..++...|++++|.+.|+++.+.. +.+...|..+..+|
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~--~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~--p~~~~a~~~lg~~~ 477 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGV--DFSESVELPLMEVRALLDLGDVAKATRKLDDLAERV--GWRWRLVWYRAVAE 477 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC---------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH--CCCHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhccccccc--ccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC--cchHHHHHHHHHHH
Confidence 67899999999999988 4 334 55678888899999999999999999997642 34577888999999
Q ss_pred HhcCCHHHHHHHHhhC-CCCC-CHHHHHHHHHHHhcCCCHHHHHHHHHHHHccCCCCCcchHHHHHHHhhcCChHHHHHH
Q 007808 443 ARAGRLAEAVDFVKRM-PIEA-DAVIWANLLGSCRVYKNVELAELALERLTELEPKNPANFVMLSNIYGDLGRWKDVARI 520 (589)
Q Consensus 443 ~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~ 520 (589)
.+.|++++|++.|+++ ...| +...+..+..++.+.|++++ ++.|+++++++|+++.++..++.+|.+.|++++|++.
T Consensus 478 ~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~ 556 (681)
T 2pzi_A 478 LLTGDYDSATKHFTEVLDTFPGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDGVISAAFGLARARSAEGDRVGAVRT 556 (681)
T ss_dssp HHHTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHH
Confidence 9999999999999987 4455 56778888899999999999 9999999999999999999999999999999999999
Q ss_pred HHHhhhCCCccCCccceeeeCCeeeeeccccCCCchHHHHHHHHHHHHccc
Q 007808 521 KVAMRDTGFKKLPGCSSIEVNEVVMLGCLSRELDRKSIVRAEANMIKLLPQ 571 (589)
Q Consensus 521 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 571 (589)
++++. +++|+++.++..++.++...|+
T Consensus 557 ~~~al------------------------~l~P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 557 LDEVP------------------------PTSRHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHTSC------------------------TTSTTHHHHHHHHHHHTC----
T ss_pred HHhhc------------------------ccCcccHHHHHHHHHHHHccCC
Confidence 99885 7899999999999999876665
No 94
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.25 E-value=3.2e-11 Score=103.47 Aligned_cols=157 Identities=12% Similarity=0.065 Sum_probs=116.4
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHhhC-CCCCCHHHHHHHHHH-Hh
Q 007808 398 TFIGILCACTHMGLVEEGLSYFQSMAMDYSIVPQIEHYGCMVDLLARAGRLAEAVDFVKRM-PIEADAVIWANLLGS-CR 475 (589)
Q Consensus 398 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~-~~ 475 (589)
.+......+...|++++|...++++.... +.+...+..+..+|.+.|++++|+..++++ ...|+...+...... +.
T Consensus 8 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~--P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~ 85 (176)
T 2r5s_A 8 QLLKQVSELLQQGEHAQALNVIQTLSDEL--QSRGDVKLAKADCLLETKQFELAQELLATIPLEYQDNSYKSLIAKLELH 85 (176)
T ss_dssp THHHHHHHHHHTTCHHHHHHHHHTSCHHH--HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccCChHHHHHHHHHHHH
Confidence 34556667788888999998888876532 234677888888888999999999999887 344544333222212 12
Q ss_pred cCCCHHHHHHHHHHHHccCCCCCcchHHHHHHHhhcCChHHHHHHHHHhhhCCCccCCccceeeeCCeeeeeccccCCCc
Q 007808 476 VYKNVELAELALERLTELEPKNPANFVMLSNIYGDLGRWKDVARIKVAMRDTGFKKLPGCSSIEVNEVVMLGCLSRELDR 555 (589)
Q Consensus 476 ~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 555 (589)
..++..+|+..++++++.+|+++..+..++.++...|++++|+..++++. +.+|+.
T Consensus 86 ~~~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l------------------------~~~p~~ 141 (176)
T 2r5s_A 86 QQAAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNIL------------------------KVNLGA 141 (176)
T ss_dssp HHHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH------------------------TTCTTT
T ss_pred hhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHH------------------------HhCccc
Confidence 22233357889999999999999999999999999999999999999885 566664
Q ss_pred --hHHHHHHHHHHHHcccCCCCcchHh
Q 007808 556 --KSIVRAEANMIKLLPQNNHPLTFIV 580 (589)
Q Consensus 556 --~~~~~~l~~~~~~~~~~~~~~~~~~ 580 (589)
+.++..++.++..+|+.++|+....
T Consensus 142 ~~~~a~~~l~~~~~~~g~~~~A~~~y~ 168 (176)
T 2r5s_A 142 QDGEVKKTFMDILSALGQGNAIASKYR 168 (176)
T ss_dssp TTTHHHHHHHHHHHHHCSSCHHHHHHH
T ss_pred ChHHHHHHHHHHHHHhCCCCcHHHHHH
Confidence 6689999999999999987665543
No 95
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.23 E-value=1.3e-10 Score=106.81 Aligned_cols=166 Identities=8% Similarity=-0.036 Sum_probs=120.1
Q ss_pred CHhHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHHhcCCHHHHHHHHhhC-CCCC---C-HHHHH
Q 007808 395 DGITFIGILCACTHMGLVEEGLSYFQSMAMDYSIVPQ-IEHYGCMVDLLARAGRLAEAVDFVKRM-PIEA---D-AVIWA 468 (589)
Q Consensus 395 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p---~-~~~~~ 468 (589)
+...+..+...+.+.|++++|...|++++......|. ...+..++.+|.+.|++++|+..|+++ ...| . ...+.
T Consensus 14 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~ 93 (261)
T 3qky_A 14 SPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEY 93 (261)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHH
Confidence 3445555666667777777777777777653221111 455666777777777777777777766 2222 2 34455
Q ss_pred HHHHHHhc--------CCCHHHHHHHHHHHHccCCCCCcch-----------------HHHHHHHhhcCChHHHHHHHHH
Q 007808 469 NLLGSCRV--------YKNVELAELALERLTELEPKNPANF-----------------VMLSNIYGDLGRWKDVARIKVA 523 (589)
Q Consensus 469 ~l~~~~~~--------~g~~~~A~~~~~~~~~~~p~~~~~~-----------------~~l~~~~~~~g~~~~A~~~~~~ 523 (589)
.+..++.. .|++++|+..|+++++..|+++... ..++.+|.+.|++++|+..+++
T Consensus 94 ~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 173 (261)
T 3qky_A 94 ERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAVTYEA 173 (261)
T ss_dssp HHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 55666666 8999999999999999999888777 7779999999999999999999
Q ss_pred hhhCCCccCCccceeeeCCeeeeeccccCCC---chHHHHHHHHHHHHc----------ccCCCCcchHhhhhh
Q 007808 524 MRDTGFKKLPGCSSIEVNEVVMLGCLSRELD---RKSIVRAEANMIKLL----------PQNNHPLTFIVVIFS 584 (589)
Q Consensus 524 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~---~~~~~~~l~~~~~~~----------~~~~~~~~~~~~~~~ 584 (589)
+. +..|+ .+.++..+|.+|..+ |+.++|+.....+..
T Consensus 174 ~l------------------------~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~ 223 (261)
T 3qky_A 174 VF------------------------DAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQ 223 (261)
T ss_dssp HH------------------------HHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHH
T ss_pred HH------------------------HHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHH
Confidence 86 55566 678999999999988 555667777665544
No 96
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.23 E-value=7.4e-11 Score=105.74 Aligned_cols=185 Identities=11% Similarity=0.019 Sum_probs=132.9
Q ss_pred cchHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCC----HhHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCCh-HHH
Q 007808 361 LITWNTIISGLAMHGRGAGALSLFHEMKNAGEMPD----GITFIGILCACTHMGLVEEGLSYFQSMAMDYSIVPQI-EHY 435 (589)
Q Consensus 361 ~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~ 435 (589)
...+..+...+.+.|++++|+..|+++.+. .|+ ...+..+..++.+.|++++|+..|+++.+...-.+.. ..+
T Consensus 4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~ 81 (225)
T 2yhc_A 4 PNEIYATAQQKLQDGNWRQAITQLEALDNR--YPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVM 81 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHH
Confidence 345566677788889999999999988874 332 2466777888888899999999998887654333332 244
Q ss_pred HHHHHHHHhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHccCCCCCcch--------------
Q 007808 436 GCMVDLLARAGRLAEAVDFVKRMPIEADAVIWANLLGSCRVYKNVELAELALERLTELEPKNPANF-------------- 501 (589)
Q Consensus 436 ~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~-------------- 501 (589)
..+..++.+.|.. .++ .+..+...+...|++++|+..|+++++..|+++.+.
T Consensus 82 ~~~g~~~~~~~~~-----~~~---------~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l~~~~~~~~ 147 (225)
T 2yhc_A 82 YMRGLTNMALDDS-----ALQ---------GFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTDATKRLVFLKDRLA 147 (225)
T ss_dssp HHHHHHHHHHHC----------------------------CCHHHHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhhh-----hhh---------hhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHH
Confidence 4455555544321 111 122233445568899999999999999999988765
Q ss_pred ---HHHHHHHhhcCChHHHHHHHHHhhhCCCccCCccceeeeCCeeeeeccccCCCch---HHHHHHHHHHHHcccCCCC
Q 007808 502 ---VMLSNIYGDLGRWKDVARIKVAMRDTGFKKLPGCSSIEVNEVVMLGCLSRELDRK---SIVRAEANMIKLLPQNNHP 575 (589)
Q Consensus 502 ---~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~---~~~~~l~~~~~~~~~~~~~ 575 (589)
..++.+|.+.|++++|+..++++. +..|+++ .++..++.+|.++|+.++|
T Consensus 148 ~~~~~~a~~~~~~~~~~~A~~~~~~~l------------------------~~~p~~~~~~~a~~~l~~~~~~~g~~~~A 203 (225)
T 2yhc_A 148 KYEYSVAEYYTERGAWVAVVNRVEGML------------------------RDYPDTQATRDALPLMENAYRQMQMNAQA 203 (225)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHH------------------------HHSTTSHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHcCcHHHHHHHHHHHH------------------------HHCcCCCccHHHHHHHHHHHHHcCCcHHH
Confidence 467889999999999999999996 6778876 6799999999999999999
Q ss_pred cchHhhhhhc
Q 007808 576 LTFIVVIFST 585 (589)
Q Consensus 576 ~~~~~~~~~~ 585 (589)
+..+..+...
T Consensus 204 ~~~~~~l~~~ 213 (225)
T 2yhc_A 204 EKVAKIIAAN 213 (225)
T ss_dssp HHHHHHHHHC
T ss_pred HHHHHHHHhh
Confidence 9988877543
No 97
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.23 E-value=5.4e-12 Score=104.93 Aligned_cols=116 Identities=9% Similarity=0.031 Sum_probs=100.8
Q ss_pred HHHHHHhcCCHHHHHHHHhhC-CCCCC-HHHHHHHHHHHhcCCCHHHHHHHHHHHHccCCCCCcchHHHHHHHhhcCChH
Q 007808 438 MVDLLARAGRLAEAVDFVKRM-PIEAD-AVIWANLLGSCRVYKNVELAELALERLTELEPKNPANFVMLSNIYGDLGRWK 515 (589)
Q Consensus 438 l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 515 (589)
|...+...|++++|++.+++. ...|+ ...+..+...|.+.|++++|++.|+++++++|+++.+|..++.+|.+.|+++
T Consensus 3 LG~~~~~~~~~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~ 82 (150)
T 4ga2_A 3 LGSMRRSKADVERYIASVQGSTPSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEENTD 82 (150)
T ss_dssp ----CCCHHHHHHHHHHHHHHSCSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred hHHHHHHcChHHHHHHHHHHhcccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCchH
Confidence 566777889999999999887 44553 3445667789999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhCCCccCCccceeeeCCeeeeeccccCCCchHHHHHHHHHHHHcccCCCCcc
Q 007808 516 DVARIKVAMRDTGFKKLPGCSSIEVNEVVMLGCLSRELDRKSIVRAEANMIKLLPQNNHPLT 577 (589)
Q Consensus 516 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~ 577 (589)
+|+..+++.. +++|+++.++..+|.+|.+.|+.++++.
T Consensus 83 ~A~~~~~~al------------------------~~~p~~~~~~~~la~~~~~~~~~~~aa~ 120 (150)
T 4ga2_A 83 KAVECYRRSV------------------------ELNPTQKDLVLKIAELLCKNDVTDGRAK 120 (150)
T ss_dssp HHHHHHHHHH------------------------HHCTTCHHHHHHHHHHHHHHCSSSSHHH
T ss_pred HHHHHHHHHH------------------------HhCCCCHHHHHHHHHHHHHcCChHHHHH
Confidence 9999999986 7999999999999999999999988654
No 98
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.20 E-value=1e-10 Score=108.81 Aligned_cols=221 Identities=14% Similarity=0.096 Sum_probs=157.1
Q ss_pred HhcCChhHHHHHHHHHHHc-------CCCCChhHHHHHHHHHHhcCChHHHHHHHhhCCC-------C----CcchHHHH
Q 007808 306 ARLGALDFSKWVHVYAEYN-------GYQGNVCVGNALIDMYAKCGIIENAVDVFNSMDT-------K----DLITWNTI 367 (589)
Q Consensus 306 ~~~~~~~~a~~~~~~~~~~-------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-------~----~~~~~~~l 367 (589)
...|+++.|...++++.+. ..+....++..+...|...|++++|...|+++.+ + ...++..+
T Consensus 12 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 91 (283)
T 3edt_B 12 SGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNL 91 (283)
T ss_dssp -CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence 4567888888888877652 2233567788899999999999999999987652 1 34578889
Q ss_pred HHHHHhCCChHHHHHHHHHHHHC------CCCC-CHhHHHHHHHHHhccCcHHHHHHHHHHhHHhc-----CCCC-ChHH
Q 007808 368 ISGLAMHGRGAGALSLFHEMKNA------GEMP-DGITFIGILCACTHMGLVEEGLSYFQSMAMDY-----SIVP-QIEH 434 (589)
Q Consensus 368 ~~~~~~~~~~~~A~~~~~~m~~~------~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-----~~~~-~~~~ 434 (589)
...|...|++++|+..+++..+. .-.| ...++..+...+...|++++|..+++++.... +..| ...+
T Consensus 92 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 171 (283)
T 3edt_B 92 AVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKT 171 (283)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 99999999999999999998864 1123 35678889999999999999999999986531 1122 3567
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhCC----------CCCC-HHHHHHHHHHHhc------CCCHHHHHHHHHHHHccCCCC
Q 007808 435 YGCMVDLLARAGRLAEAVDFVKRMP----------IEAD-AVIWANLLGSCRV------YKNVELAELALERLTELEPKN 497 (589)
Q Consensus 435 ~~~l~~~~~~~g~~~~A~~~~~~~~----------~~p~-~~~~~~l~~~~~~------~g~~~~A~~~~~~~~~~~p~~ 497 (589)
+..+..+|.+.|++++|++.++++. ..+. ...+..+...... ...+..+...++......|..
T Consensus 172 ~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (283)
T 3edt_B 172 KNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTV 251 (283)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHH
Confidence 8889999999999999999998762 1222 2233333333322 223445555555554455666
Q ss_pred CcchHHHHHHHhhcCChHHHHHHHHHhhh
Q 007808 498 PANFVMLSNIYGDLGRWKDVARIKVAMRD 526 (589)
Q Consensus 498 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 526 (589)
+.++..++.+|...|++++|.+++++..+
T Consensus 252 ~~~~~~la~~~~~~g~~~~A~~~~~~al~ 280 (283)
T 3edt_B 252 NTTLRSLGALYRRQGKLEAAHTLEDCASR 280 (283)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 77899999999999999999999998853
No 99
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.15 E-value=7e-10 Score=89.96 Aligned_cols=125 Identities=17% Similarity=0.212 Sum_probs=77.7
Q ss_pred HHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHhhC-C-CCCCHHHHHHHHHHHhc
Q 007808 399 FIGILCACTHMGLVEEGLSYFQSMAMDYSIVPQIEHYGCMVDLLARAGRLAEAVDFVKRM-P-IEADAVIWANLLGSCRV 476 (589)
Q Consensus 399 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~-~~p~~~~~~~l~~~~~~ 476 (589)
+..+...+...|++++|..+++++... .+.+...+..++..+...|++++|...++++ . .+.+...+..+...+..
T Consensus 4 ~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 81 (136)
T 2fo7_A 4 WYNLGNAYYKQGDYDEAIEYYQKALEL--DPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYK 81 (136)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHc--CCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHH
Confidence 344445555555555555555555432 1223445555555566666666666666555 1 12345556666667777
Q ss_pred CCCHHHHHHHHHHHHccCCCCCcchHHHHHHHhhcCChHHHHHHHHHhh
Q 007808 477 YKNVELAELALERLTELEPKNPANFVMLSNIYGDLGRWKDVARIKVAMR 525 (589)
Q Consensus 477 ~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 525 (589)
.|++++|...++++++..|.++..+..++.++.+.|++++|...++++.
T Consensus 82 ~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~ 130 (136)
T 2fo7_A 82 QGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKAL 130 (136)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHH
Confidence 7777777777777777777777777777777777777777777777764
No 100
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.15 E-value=1.1e-09 Score=97.97 Aligned_cols=180 Identities=10% Similarity=-0.003 Sum_probs=127.4
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHhhCCC--CC----cchHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHh----H
Q 007808 329 NVCVGNALIDMYAKCGIIENAVDVFNSMDT--KD----LITWNTIISGLAMHGRGAGALSLFHEMKNAGEMPDGI----T 398 (589)
Q Consensus 329 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~----~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~----~ 398 (589)
+...+..+...+...|++++|...|+++.+ |+ ...+..++.+|.+.|++++|+..|+++.+. .|+.. .
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~--~P~~~~~~~a 80 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRL--NPTHPNIDYV 80 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCTTHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--CcCCCcHHHH
Confidence 344566678889999999999999998873 32 246788899999999999999999999984 44322 4
Q ss_pred HHHHHHHHhc------------------cCcHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHHhcCCHHHHHHHHhhCC
Q 007808 399 FIGILCACTH------------------MGLVEEGLSYFQSMAMDYSIVPQ-IEHYGCMVDLLARAGRLAEAVDFVKRMP 459 (589)
Q Consensus 399 ~~~l~~~~~~------------------~g~~~~A~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 459 (589)
+..+..++.. .|++++|...|+++++.. |+ ...+....... ......
T Consensus 81 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~---P~~~~a~~a~~~l~----~~~~~~------- 146 (225)
T 2yhc_A 81 MYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGY---PNSQYTTDATKRLV----FLKDRL------- 146 (225)
T ss_dssp HHHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTC---TTCTTHHHHHHHHH----HHHHHH-------
T ss_pred HHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHC---cCChhHHHHHHHHH----HHHHHH-------
Confidence 4455555543 467777777777776432 33 22222111100 000000
Q ss_pred CCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHccCCCCC---cchHHHHHHHhhcCChHHHHHHHHHhhhCC
Q 007808 460 IEADAVIWANLLGSCRVYKNVELAELALERLTELEPKNP---ANFVMLSNIYGDLGRWKDVARIKVAMRDTG 528 (589)
Q Consensus 460 ~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 528 (589)
......+...+.+.|++++|+..|+++++..|+++ .++..++.+|.+.|++++|++.++.+...+
T Consensus 147 ----~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~ 214 (225)
T 2yhc_A 147 ----AKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANS 214 (225)
T ss_dssp ----HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCC
T ss_pred ----HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC
Confidence 00112355778899999999999999999999875 579999999999999999999999887544
No 101
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=99.14 E-value=1.1e-10 Score=96.68 Aligned_cols=116 Identities=9% Similarity=0.063 Sum_probs=97.5
Q ss_pred ChHHHHHHHHHHHhcCCHHHHHHHHhhC-CCCC-CHHHHHHHHHHHhcCCCHHHHHHHHHHHHccCCCCCcchHHHHHHH
Q 007808 431 QIEHYGCMVDLLARAGRLAEAVDFVKRM-PIEA-DAVIWANLLGSCRVYKNVELAELALERLTELEPKNPANFVMLSNIY 508 (589)
Q Consensus 431 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 508 (589)
+...+..+...+.+.|++++|+..|+++ ...| +...|..+..++...|++++|+..|+++++++|+++.++..++.+|
T Consensus 20 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~ 99 (148)
T 2vgx_A 20 TLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECL 99 (148)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHH
Confidence 3556777888999999999999999987 3344 6788888889999999999999999999999999999999999999
Q ss_pred hhcCChHHHHHHHHHhhhCCCccCCccceeeeCCeeeeeccccCCCchHHHHHHHHHHHHcc
Q 007808 509 GDLGRWKDVARIKVAMRDTGFKKLPGCSSIEVNEVVMLGCLSRELDRKSIVRAEANMIKLLP 570 (589)
Q Consensus 509 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~ 570 (589)
...|++++|++.+++.. +++|++|........+...+.
T Consensus 100 ~~~g~~~~A~~~~~~al------------------------~~~p~~~~~~~~~~~~~~~l~ 137 (148)
T 2vgx_A 100 LQXGELAEAESGLFLAQ------------------------ELIANXPEFXELSTRVSSMLE 137 (148)
T ss_dssp HHTTCHHHHHHHHHHHH------------------------HHHTTCGGGHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHH------------------------HHCcCCCcchHHHHHHHHHHH
Confidence 99999999999999985 677777766655555554443
No 102
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.13 E-value=4.6e-10 Score=117.96 Aligned_cols=169 Identities=9% Similarity=-0.078 Sum_probs=129.3
Q ss_pred HhcCChHHHHHHHhhCC-----------CCCcchHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhcc
Q 007808 341 AKCGIIENAVDVFNSMD-----------TKDLITWNTIISGLAMHGRGAGALSLFHEMKNAGEMPDGITFIGILCACTHM 409 (589)
Q Consensus 341 ~~~g~~~~A~~~~~~~~-----------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~ 409 (589)
...|++++|++.+++.. ..+...+..+..+|...|++++|+..|+++.+.. +.+...+..+..++...
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~ 480 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERV-GWRWRLVWYRAVAELLT 480 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC-cchHHHHHHHHHHHHHc
Confidence 56788888888887765 2355677888888888888888888888888742 23566777888888888
Q ss_pred CcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHhhC-CCCC-CHHHHHHHHHHHhcCCCHHHHHHHH
Q 007808 410 GLVEEGLSYFQSMAMDYSIVPQIEHYGCMVDLLARAGRLAEAVDFVKRM-PIEA-DAVIWANLLGSCRVYKNVELAELAL 487 (589)
Q Consensus 410 g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~ 487 (589)
|++++|.+.|+++.+.. +.+...|..+..+|.+.|++++ ++.|+++ ...| +...|..+..++.+.|++++|++.|
T Consensus 481 g~~~~A~~~~~~al~l~--P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~ 557 (681)
T 2pzi_A 481 GDYDSATKHFTEVLDTF--PGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDGVISAAFGLARARSAEGDRVGAVRTL 557 (681)
T ss_dssp TCHHHHHHHHHHHHHHS--TTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 88888888888887532 2346677888888888888888 8888877 3344 5677788888888888888888888
Q ss_pred HHHHccCCCCCcchHHHHHHHhhcCC
Q 007808 488 ERLTELEPKNPANFVMLSNIYGDLGR 513 (589)
Q Consensus 488 ~~~~~~~p~~~~~~~~l~~~~~~~g~ 513 (589)
+++++++|++..++..++.++...|+
T Consensus 558 ~~al~l~P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 558 DEVPPTSRHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HTSCTTSTTHHHHHHHHHHHTC----
T ss_pred HhhcccCcccHHHHHHHHHHHHccCC
Confidence 88888888888888888888877555
No 103
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.13 E-value=5.8e-09 Score=95.41 Aligned_cols=239 Identities=10% Similarity=0.015 Sum_probs=156.9
Q ss_pred hcCCHHHHHHHHhhCCCCCc-hhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHhcCChhHHHHHH
Q 007808 240 NNGDVEECKRLFEEMPERNV-FSWNGLIGGYANNGLFFEVLDAFKRMLTEGRVFPNDATIVTVLSACARLGALDFSKWVH 318 (589)
Q Consensus 240 ~~~~~~~A~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~ 318 (589)
-.|++..++.-...+...+. ..-..+.++|...|++... .. -.|....+..+...+ ..+ +...+
T Consensus 25 y~G~yq~~i~e~~~~~~~~~~~~~~~~~Rs~iAlg~~~~~---------~~-~~~~~~a~~~la~~~-~~~----a~~~l 89 (310)
T 3mv2_B 25 YTGNFVQCLQEIEKFSKVTDNTLLFYKAKTLLALGQYQSQ---------DP-TSKLGKVLDLYVQFL-DTK----NIEEL 89 (310)
T ss_dssp TTTCHHHHTHHHHTSSCCCCHHHHHHHHHHHHHTTCCCCC---------CS-SSTTHHHHHHHHHHH-TTT----CCHHH
T ss_pred HhhHHHHHHHHHHhcCccchHHHHHHHHHHHHHcCCCccC---------CC-CCHHHHHHHHHHHHh-ccc----HHHHH
Confidence 35666666664444433222 2222345677777776532 11 234433433333333 222 55666
Q ss_pred HHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHhhCCCC-----CcchHHHHHHHHHhCCChHHHHHHHHHHHHCCCC
Q 007808 319 VYAEYNGYQGNVCVGNALIDMYAKCGIIENAVDVFNSMDTK-----DLITWNTIISGLAMHGRGAGALSLFHEMKNAGEM 393 (589)
Q Consensus 319 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~ 393 (589)
++....+ +++...+..+..++...|++++|++++.+.... +...+..++..+.+.|+.+.|.+.+++|.+ ..
T Consensus 90 ~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~--~~ 166 (310)
T 3mv2_B 90 ENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTN--AI 166 (310)
T ss_dssp HHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HS
T ss_pred HHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cC
Confidence 6655544 445555567888888889999999998887432 445677788899999999999999999988 46
Q ss_pred C-----CHhHHHHHHHH--Hhc--cCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHhhCC-C---
Q 007808 394 P-----DGITFIGILCA--CTH--MGLVEEGLSYFQSMAMDYSIVPQIEHYGCMVDLLARAGRLAEAVDFVKRMP-I--- 460 (589)
Q Consensus 394 p-----~~~~~~~l~~~--~~~--~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~--- 460 (589)
| +..+...++.+ ... .+++.+|..+|+++... .|+..+...+..++.+.|++++|.+.++.+. .
T Consensus 167 ~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~---~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~~p~ 243 (310)
T 3mv2_B 167 EDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT---FPTWKTQLGLLNLHLQQRNIAEAQGIVELLLSDYYS 243 (310)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT---SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSHHHH
T ss_pred ccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh---CCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHhccc
Confidence 6 35555666655 333 34899999999998643 3553333444558999999999999988652 1
Q ss_pred -------CC-CHHHHHHHHHHHhcCCCHHHHHHHHHHHHccCCCCCcch
Q 007808 461 -------EA-DAVIWANLLGSCRVYKNVELAELALERLTELEPKNPANF 501 (589)
Q Consensus 461 -------~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 501 (589)
.| ++.++..++......|+ +|.++++++.+..|++|.+.
T Consensus 244 ~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~hp~i~ 290 (310)
T 3mv2_B 244 VEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHEHAFIK 290 (310)
T ss_dssp TTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCCCHHHH
T ss_pred ccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCCChHHH
Confidence 24 45666566666666777 89999999999999987543
No 104
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.11 E-value=5.5e-10 Score=115.34 Aligned_cols=149 Identities=18% Similarity=0.039 Sum_probs=102.6
Q ss_pred CCChHHHHHHHHHHHHCCCCC-CHhHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHH
Q 007808 374 HGRGAGALSLFHEMKNAGEMP-DGITFIGILCACTHMGLVEEGLSYFQSMAMDYSIVPQIEHYGCMVDLLARAGRLAEAV 452 (589)
Q Consensus 374 ~~~~~~A~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 452 (589)
.|++++|+..+++..+. .| +...+..+...+...|++++|.+.+++..+. .+.+...+..+..+|...|++++|+
T Consensus 2 ~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~ 77 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRH--RPQDFVAWLMLADAELGMGDTTAGEMAVQRGLAL--HPGHPEAVARLGRVRWTQQRHAEAA 77 (568)
T ss_dssp ---------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT--STTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred CccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHH
Confidence 36777888888887764 34 4667777888888888888888888887642 2234667778888888888888888
Q ss_pred HHHhhC-CCCC-CHHHHHHHHHHHhcCCCHHHHHHHHHHHHccCCCCCcchHHHHHHHhhc---CChHHHHHHHHHhhh
Q 007808 453 DFVKRM-PIEA-DAVIWANLLGSCRVYKNVELAELALERLTELEPKNPANFVMLSNIYGDL---GRWKDVARIKVAMRD 526 (589)
Q Consensus 453 ~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~---g~~~~A~~~~~~~~~ 526 (589)
+.++++ ...| +...+..+..++...|++++|.+.++++++++|+++.++..++.++... |++++|.+.+++..+
T Consensus 78 ~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~ 156 (568)
T 2vsy_A 78 VLLQQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVA 156 (568)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHh
Confidence 888876 3334 5667777888888888888888888888888888888888888888888 888888888888754
No 105
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=99.11 E-value=3.2e-11 Score=99.57 Aligned_cols=94 Identities=10% Similarity=-0.031 Sum_probs=83.3
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHhhC-CCCC-CHHHHHHHHHHHhcCCCHHHHHHHHHHHHccCCCCCcchHHHHHHHh
Q 007808 432 IEHYGCMVDLLARAGRLAEAVDFVKRM-PIEA-DAVIWANLLGSCRVYKNVELAELALERLTELEPKNPANFVMLSNIYG 509 (589)
Q Consensus 432 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 509 (589)
...+..+...+.+.|++++|+..|+++ ...| +...|..+..+|...|++++|+..|+++++++|+++.++..++.+|.
T Consensus 36 ~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~lg~~~~ 115 (151)
T 3gyz_A 36 MDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHTGQCQL 115 (151)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHH
Confidence 556777888899999999999999988 3445 67788888899999999999999999999999999999999999999
Q ss_pred hcCChHHHHHHHHHhh
Q 007808 510 DLGRWKDVARIKVAMR 525 (589)
Q Consensus 510 ~~g~~~~A~~~~~~~~ 525 (589)
+.|++++|++.++++.
T Consensus 116 ~lg~~~eA~~~~~~al 131 (151)
T 3gyz_A 116 RLKAPLKAKECFELVI 131 (151)
T ss_dssp HTTCHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHH
Confidence 9999999999999886
No 106
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.10 E-value=1.3e-09 Score=101.46 Aligned_cols=174 Identities=11% Similarity=0.004 Sum_probs=141.0
Q ss_pred HHHHHHHhhCCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHHCCCCC-CHhHHHHHHHHHhccCcHHHHHHHHHHhHHh
Q 007808 347 ENAVDVFNSMDTKDLITWNTIISGLAMHGRGAGALSLFHEMKNAGEMP-DGITFIGILCACTHMGLVEEGLSYFQSMAMD 425 (589)
Q Consensus 347 ~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 425 (589)
+.....+......+...+..+...+...|++++|+..|++..+. .| +...+..+...+...|++++|...++++...
T Consensus 103 ~~l~~~l~~~lp~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~ 180 (287)
T 3qou_A 103 EAIRALLDXVLPREEELXAQQAMQLMQESNYTDALPLLXDAWQL--SNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQ 180 (287)
T ss_dssp HHHHHHHHHHSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--TTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG
T ss_pred HHHHHHHHHHcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHh--CCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchh
Confidence 34444555545455667777888899999999999999999985 55 5677888999999999999999999998643
Q ss_pred cCCCCChHHHHH-HHHHHHhcCCHHHHHHHHhhC-CCCC-CHHHHHHHHHHHhcCCCHHHHHHHHHHHHccCCCC--Ccc
Q 007808 426 YSIVPQIEHYGC-MVDLLARAGRLAEAVDFVKRM-PIEA-DAVIWANLLGSCRVYKNVELAELALERLTELEPKN--PAN 500 (589)
Q Consensus 426 ~~~~~~~~~~~~-l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~--~~~ 500 (589)
.|+...... ....+.+.++.++|++.+++. ...| +...+..+...+...|++++|+..|+++++.+|++ ..+
T Consensus 181 ---~p~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a 257 (287)
T 3qou_A 181 ---DQDTRYQGLVAQIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQT 257 (287)
T ss_dssp ---GCSHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHH
T ss_pred ---hcchHHHHHHHHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchH
Confidence 455443332 333467788888899988887 3345 67788888999999999999999999999999988 789
Q ss_pred hHHHHHHHhhcCChHHHHHHHHHhh
Q 007808 501 FVMLSNIYGDLGRWKDVARIKVAMR 525 (589)
Q Consensus 501 ~~~l~~~~~~~g~~~~A~~~~~~~~ 525 (589)
+..++.++...|+.++|...+++..
T Consensus 258 ~~~l~~~~~~~g~~~~a~~~~r~al 282 (287)
T 3qou_A 258 RXTFQEILAALGTGDALASXYRRQL 282 (287)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCcHHHHHHHHH
Confidence 9999999999999999999988764
No 107
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=99.09 E-value=1e-09 Score=88.80 Aligned_cols=118 Identities=10% Similarity=0.031 Sum_probs=103.7
Q ss_pred CChHHHHHHHHHHHhcCCHHHHHHHHhhC-CCCC-CHHHHHHHHHHHhcCCCHHHHHHHHHHHHccCCCCCcchHHHHHH
Q 007808 430 PQIEHYGCMVDLLARAGRLAEAVDFVKRM-PIEA-DAVIWANLLGSCRVYKNVELAELALERLTELEPKNPANFVMLSNI 507 (589)
Q Consensus 430 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 507 (589)
.+...+..++..+.+.|++++|++.++++ ...| +...+..+..++...|++++|...++++++..|+++.++..++.+
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~ 93 (133)
T 2lni_A 14 DLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAA 93 (133)
T ss_dssp CHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHHH
Confidence 34667788888999999999999999887 4444 677888888999999999999999999999999999999999999
Q ss_pred HhhcCChHHHHHHHHHhhhCCCccCCccceeeeCCeeeeeccccCCCchHHHHHHHHHHHHccc
Q 007808 508 YGDLGRWKDVARIKVAMRDTGFKKLPGCSSIEVNEVVMLGCLSRELDRKSIVRAEANMIKLLPQ 571 (589)
Q Consensus 508 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 571 (589)
+.+.|++++|++.+++.. +.+|+++.++..++.++...|+
T Consensus 94 ~~~~~~~~~A~~~~~~~~------------------------~~~p~~~~~~~~l~~~~~~~~~ 133 (133)
T 2lni_A 94 LEAMKDYTKAMDVYQKAL------------------------DLDSSCKEAADGYQRCMMAQYN 133 (133)
T ss_dssp HHHTTCHHHHHHHHHHHH------------------------HHCGGGTHHHHHHHHHHHHHTC
T ss_pred HHHHhhHHHHHHHHHHHH------------------------HhCCCchHHHHHHHHHHHHhcC
Confidence 999999999999999886 6789999999999999988764
No 108
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.09 E-value=3.6e-09 Score=85.68 Aligned_cols=131 Identities=15% Similarity=0.221 Sum_probs=108.2
Q ss_pred hHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHH
Q 007808 363 TWNTIISGLAMHGRGAGALSLFHEMKNAGEMPDGITFIGILCACTHMGLVEEGLSYFQSMAMDYSIVPQIEHYGCMVDLL 442 (589)
Q Consensus 363 ~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~ 442 (589)
.|..++..+...|++++|+.+++++.+.+ +.+...+..+...+...|++++|..+++++... .+.+...+..++..+
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~ 79 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL--DPRSAEAWYNLGNAY 79 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHH--CCCchHHHHHHHHHH
Confidence 46677888888999999999999988753 335677788888888999999999999988753 234567788889999
Q ss_pred HhcCCHHHHHHHHhhC-CC-CCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHccCCC
Q 007808 443 ARAGRLAEAVDFVKRM-PI-EADAVIWANLLGSCRVYKNVELAELALERLTELEPK 496 (589)
Q Consensus 443 ~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 496 (589)
...|++++|.+.++++ .. +.+...+..+...+...|++++|...++++++.+|+
T Consensus 80 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~ 135 (136)
T 2fo7_A 80 YKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR 135 (136)
T ss_dssp HTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSTT
T ss_pred HHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHccCCC
Confidence 9999999999999887 22 345777888889999999999999999999998886
No 109
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.08 E-value=9.8e-10 Score=96.95 Aligned_cols=156 Identities=10% Similarity=-0.011 Sum_probs=70.2
Q ss_pred HHHHHHhcCChHHHHHHHhhCCCC---CcchHHH----------------HHHHHHhCCChHHHHHHHHHHHHCCCCC-C
Q 007808 336 LIDMYAKCGIIENAVDVFNSMDTK---DLITWNT----------------IISGLAMHGRGAGALSLFHEMKNAGEMP-D 395 (589)
Q Consensus 336 l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~----------------l~~~~~~~~~~~~A~~~~~~m~~~~~~p-~ 395 (589)
....+...|++++|+..|++..+. +...|.. +..+|.+.|++++|+..|++..+. .| +
T Consensus 10 ~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~ 87 (208)
T 3urz_A 10 KVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQK--APNN 87 (208)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTC
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--CCCC
Confidence 344455566666666666655422 2233433 455555555555555555555542 23 3
Q ss_pred HhHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCC--HHHHHHHHhhCCCCCCHH--HHHHHH
Q 007808 396 GITFIGILCACTHMGLVEEGLSYFQSMAMDYSIVPQIEHYGCMVDLLARAGR--LAEAVDFVKRMPIEADAV--IWANLL 471 (589)
Q Consensus 396 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~~~A~~~~~~~~~~p~~~--~~~~l~ 471 (589)
...+..+..++...|++++|...|+++++. .+.+...+..+..+|...|. .+.+...+++.. .|+.. .+....
T Consensus 88 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~a~~~~g 164 (208)
T 3urz_A 88 VDCLEACAEMQVCRGQEKDALRMYEKILQL--EADNLAANIFLGNYYYLTAEQEKKKLETDYKKLS-SPTKMQYARYRDG 164 (208)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHHHHHHHHHHC----CCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHh-CCCchhHHHHHHH
Confidence 344455555555555555555555555432 11224444444444443332 223333444332 22221 222223
Q ss_pred HHHhcCCCHHHHHHHHHHHHccCCC
Q 007808 472 GSCRVYKNVELAELALERLTELEPK 496 (589)
Q Consensus 472 ~~~~~~g~~~~A~~~~~~~~~~~p~ 496 (589)
.++...|++++|+..|++++++.|+
T Consensus 165 ~~~~~~~~~~~A~~~~~~al~l~P~ 189 (208)
T 3urz_A 165 LSKLFTTRYEKARNSLQKVILRFPS 189 (208)
T ss_dssp HHHHHHHTHHHHHHHHHHHTTTSCC
T ss_pred HHHHHccCHHHHHHHHHHHHHhCCC
Confidence 3334445555555555555555554
No 110
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=99.08 E-value=4.8e-09 Score=92.77 Aligned_cols=161 Identities=9% Similarity=-0.085 Sum_probs=129.3
Q ss_pred CCcchHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccC----cHHHHHHHHHHhHHhcCCCCChHH
Q 007808 359 KDLITWNTIISGLAMHGRGAGALSLFHEMKNAGEMPDGITFIGILCACTHMG----LVEEGLSYFQSMAMDYSIVPQIEH 434 (589)
Q Consensus 359 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g----~~~~A~~~~~~~~~~~~~~~~~~~ 434 (589)
.++..+..+...|...+++++|+.+|++..+.| +...+..|...|.. + ++++|.++|++.... -++..
T Consensus 16 g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~~----g~~~a 87 (212)
T 3rjv_A 16 GDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAEKAVEA----GSKSG 87 (212)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHHT----TCHHH
T ss_pred CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHC----CCHHH
Confidence 356667777777888888999999999888865 55667777777777 6 899999999988652 45677
Q ss_pred HHHHHHHHHh----cCCHHHHHHHHhhC-CCCCC---HHHHHHHHHHHhc----CCCHHHHHHHHHHHHccCCCCCcchH
Q 007808 435 YGCMVDLLAR----AGRLAEAVDFVKRM-PIEAD---AVIWANLLGSCRV----YKNVELAELALERLTELEPKNPANFV 502 (589)
Q Consensus 435 ~~~l~~~~~~----~g~~~~A~~~~~~~-~~~p~---~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~p~~~~~~~ 502 (589)
+..|...|.. .+++++|++.|++. ...|. ...+..+...|.. .+++++|...|+++.+. |.++.++.
T Consensus 88 ~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~-~~~~~a~~ 166 (212)
T 3rjv_A 88 EIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL-SRTGYAEY 166 (212)
T ss_dssp HHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT-SCTTHHHH
T ss_pred HHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc-CCCHHHHH
Confidence 7788888877 88999999999988 34443 6778888888877 88999999999999998 66688999
Q ss_pred HHHHHHhhc-C-----ChHHHHHHHHHhhhCC
Q 007808 503 MLSNIYGDL-G-----RWKDVARIKVAMRDTG 528 (589)
Q Consensus 503 ~l~~~~~~~-g-----~~~~A~~~~~~~~~~~ 528 (589)
.|+.+|... | ++++|+..+++..+.|
T Consensus 167 ~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g 198 (212)
T 3rjv_A 167 WAGMMFQQGEKGFIEPNKQKALHWLNVSCLEG 198 (212)
T ss_dssp HHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcC
Confidence 999999864 3 8999999999986433
No 111
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=99.08 E-value=4.4e-10 Score=92.73 Aligned_cols=105 Identities=10% Similarity=-0.016 Sum_probs=89.7
Q ss_pred CCC-CHhHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHhhC-CCCC-CHHHHH
Q 007808 392 EMP-DGITFIGILCACTHMGLVEEGLSYFQSMAMDYSIVPQIEHYGCMVDLLARAGRLAEAVDFVKRM-PIEA-DAVIWA 468 (589)
Q Consensus 392 ~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~ 468 (589)
+.| +...+..+...+.+.|++++|...|++++.. .+.+...|..+..+|...|++++|++.|+++ .+.| +...|.
T Consensus 31 l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~--~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~ 108 (151)
T 3gyz_A 31 IPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIY--DFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVF 108 (151)
T ss_dssp SCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHH
T ss_pred CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHH
Confidence 455 3456778888999999999999999999863 2345788999999999999999999999998 3445 567888
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHccCCCCC
Q 007808 469 NLLGSCRVYKNVELAELALERLTELEPKNP 498 (589)
Q Consensus 469 ~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~ 498 (589)
.+..+|...|++++|+..|++++++.|+++
T Consensus 109 ~lg~~~~~lg~~~eA~~~~~~al~l~~~~~ 138 (151)
T 3gyz_A 109 HTGQCQLRLKAPLKAKECFELVIQHSNDEK 138 (151)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCCCHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCHH
Confidence 899999999999999999999999999843
No 112
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=99.07 E-value=1.5e-09 Score=87.50 Aligned_cols=119 Identities=13% Similarity=0.082 Sum_probs=101.8
Q ss_pred ChHHHHHHHHHHHhcCCHHHHHHHHhhC-CCCC-CHHHHHHHHHHHhcCCCHHHHHHHHHHHHccCCCCCcchHHHHHHH
Q 007808 431 QIEHYGCMVDLLARAGRLAEAVDFVKRM-PIEA-DAVIWANLLGSCRVYKNVELAELALERLTELEPKNPANFVMLSNIY 508 (589)
Q Consensus 431 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 508 (589)
+...+..++..+...|++++|++.++++ ...| +...+..+...+...|++++|.+.++++++..|+++..+..++.++
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (131)
T 2vyi_A 11 EAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLAL 90 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHHH
Confidence 3456677788888888888888888876 2233 6677888888899999999999999999999999999999999999
Q ss_pred hhcCChHHHHHHHHHhhhCCCccCCccceeeeCCeeeeeccccCCCchHHHHHHHHHHHHcccCC
Q 007808 509 GDLGRWKDVARIKVAMRDTGFKKLPGCSSIEVNEVVMLGCLSRELDRKSIVRAEANMIKLLPQNN 573 (589)
Q Consensus 509 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~ 573 (589)
.+.|++++|.+.+++.. +.+|+++.++..++.++..+|+.+
T Consensus 91 ~~~~~~~~A~~~~~~~~------------------------~~~p~~~~~~~~l~~~~~~~~~~~ 131 (131)
T 2vyi_A 91 SSLNKHVEAVAYYKKAL------------------------ELDPDNETYKSNLKIAELKLREAP 131 (131)
T ss_dssp HHTTCHHHHHHHHHHHH------------------------HHSTTCHHHHHHHHHHHHHHTTCC
T ss_pred HHhCCHHHHHHHHHHHH------------------------hcCccchHHHHHHHHHHHHHhcCC
Confidence 99999999999999885 678999999999999999988763
No 113
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.07 E-value=4.4e-10 Score=116.05 Aligned_cols=147 Identities=12% Similarity=0.026 Sum_probs=115.4
Q ss_pred cCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHhhC-CCCC-CHHHHHHHHHHHhcCCCHHHHHHH
Q 007808 409 MGLVEEGLSYFQSMAMDYSIVPQIEHYGCMVDLLARAGRLAEAVDFVKRM-PIEA-DAVIWANLLGSCRVYKNVELAELA 486 (589)
Q Consensus 409 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~ 486 (589)
.|++++|.+.++++.+. .+.+...+..+...|.+.|++++|++.+++. ...| +...+..+..++...|++++|.+.
T Consensus 2 ~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~ 79 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRH--RPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVL 79 (568)
T ss_dssp ---------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 47889999999988642 2334788999999999999999999999988 5555 577888889999999999999999
Q ss_pred HHHHHccCCCCCcchHHHHHHHhhcCChHHHHHHHHHhhhCCCccCCccceeeeCCeeeeeccccCCCchHHHHHHHHHH
Q 007808 487 LERLTELEPKNPANFVMLSNIYGDLGRWKDVARIKVAMRDTGFKKLPGCSSIEVNEVVMLGCLSRELDRKSIVRAEANMI 566 (589)
Q Consensus 487 ~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~~ 566 (589)
++++++++|+++..+..++.+|.+.|++++|++.+++.. +++|+++.++..++.++
T Consensus 80 ~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al------------------------~~~p~~~~~~~~l~~~~ 135 (568)
T 2vsy_A 80 LQQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAH------------------------QLLPEEPYITAQLLNWR 135 (568)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH------------------------HHCTTCHHHHHHHHHHH
T ss_pred HHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH------------------------HhCCCCHHHHHHHHHHH
Confidence 999999999999999999999999999999999999986 78899999999999999
Q ss_pred HHc---ccCCCCcchHhh
Q 007808 567 KLL---PQNNHPLTFIVV 581 (589)
Q Consensus 567 ~~~---~~~~~~~~~~~~ 581 (589)
..+ |+.++|+..+..
T Consensus 136 ~~~~~~g~~~~A~~~~~~ 153 (568)
T 2vsy_A 136 RRLCDWRALDVLSAQVRA 153 (568)
T ss_dssp HHTTCCTTHHHHHHHHHH
T ss_pred HHhhccccHHHHHHHHHH
Confidence 999 777767666544
No 114
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.07 E-value=9.3e-10 Score=94.22 Aligned_cols=158 Identities=11% Similarity=0.055 Sum_probs=113.7
Q ss_pred hHHHHHHHHHhCCChHHHHHHHHHHHHCCCCC-CHhHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHH
Q 007808 363 TWNTIISGLAMHGRGAGALSLFHEMKNAGEMP-DGITFIGILCACTHMGLVEEGLSYFQSMAMDYSIVPQIEHYGCMVDL 441 (589)
Q Consensus 363 ~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~ 441 (589)
.+..+...+...|++++|+..|++..+. .| +...+..+...+...|++++|...++++... .|+...+..+...
T Consensus 8 ~~~~~a~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~---~p~~~~~~~~~~~ 82 (176)
T 2r5s_A 8 QLLKQVSELLQQGEHAQALNVIQTLSDE--LQSRGDVKLAKADCLLETKQFELAQELLATIPLE---YQDNSYKSLIAKL 82 (176)
T ss_dssp THHHHHHHHHHTTCHHHHHHHHHTSCHH--HHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGG---GCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhc---cCChHHHHHHHHH
Confidence 3455566677778888888887776653 34 4566777777777888888888888777543 2333333222212
Q ss_pred -HHhcCCHHHHHHHHhhC-CCCC-CHHHHHHHHHHHhcCCCHHHHHHHHHHHHccCCCC--CcchHHHHHHHhhcCChHH
Q 007808 442 -LARAGRLAEAVDFVKRM-PIEA-DAVIWANLLGSCRVYKNVELAELALERLTELEPKN--PANFVMLSNIYGDLGRWKD 516 (589)
Q Consensus 442 -~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~--~~~~~~l~~~~~~~g~~~~ 516 (589)
+...+...+|+..+++. ...| +...+..+..++...|++++|...|+++++.+|+. +.++..++.++...|+.++
T Consensus 83 ~~~~~~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~ 162 (176)
T 2r5s_A 83 ELHQQAAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNA 162 (176)
T ss_dssp HHHHHHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCH
T ss_pred HHHhhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCc
Confidence 12222333467777776 3455 57788888899999999999999999999999875 4589999999999999999
Q ss_pred HHHHHHHhh
Q 007808 517 VARIKVAMR 525 (589)
Q Consensus 517 A~~~~~~~~ 525 (589)
|...+++..
T Consensus 163 A~~~y~~al 171 (176)
T 2r5s_A 163 IASKYRRQL 171 (176)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999998874
No 115
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=99.06 E-value=1.1e-09 Score=87.93 Aligned_cols=114 Identities=11% Similarity=0.012 Sum_probs=100.6
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHhhC-CCCC-CHHHHHHHHHHHhcCCCHHHHHHHHHHHHccCCCCCcchHHHHHHHh
Q 007808 432 IEHYGCMVDLLARAGRLAEAVDFVKRM-PIEA-DAVIWANLLGSCRVYKNVELAELALERLTELEPKNPANFVMLSNIYG 509 (589)
Q Consensus 432 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 509 (589)
...+..+...+.+.|++++|+..|++. ...| +...|..+..++.+.|++++|+..++++++++|+++.++..++.++.
T Consensus 4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 83 (126)
T 3upv_A 4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQI 83 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 445677788899999999999999887 3344 67888889999999999999999999999999999999999999999
Q ss_pred hcCChHHHHHHHHHhhhCCCccCCccceeeeCCeeeeeccccC------CCchHHHHHHHHHHHHc
Q 007808 510 DLGRWKDVARIKVAMRDTGFKKLPGCSSIEVNEVVMLGCLSRE------LDRKSIVRAEANMIKLL 569 (589)
Q Consensus 510 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------p~~~~~~~~l~~~~~~~ 569 (589)
..|++++|+..+++.. +++ |+++.+...++.+..++
T Consensus 84 ~~~~~~~A~~~~~~al------------------------~~~p~~~~~p~~~~~~~~l~~~~~~l 125 (126)
T 3upv_A 84 AVKEYASALETLDAAR------------------------TKDAEVNNGSSAREIDQLYYKASQQR 125 (126)
T ss_dssp HTTCHHHHHHHHHHHH------------------------HHHHHHHTTTTHHHHHHHHHHHHHHC
T ss_pred HHhCHHHHHHHHHHHH------------------------HhCcccCCchhHHHHHHHHHHHHHhh
Confidence 9999999999999986 566 99999999999887654
No 116
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.04 E-value=2.4e-09 Score=94.41 Aligned_cols=120 Identities=8% Similarity=0.023 Sum_probs=48.3
Q ss_pred HHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHhhC-CCCC-CHHHHHHHHHHHhcCCC
Q 007808 402 ILCACTHMGLVEEGLSYFQSMAMDYSIVPQIEHYGCMVDLLARAGRLAEAVDFVKRM-PIEA-DAVIWANLLGSCRVYKN 479 (589)
Q Consensus 402 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~ 479 (589)
+..++...|++++|...|++.++. .+.+...+..+..+|...|++++|+..|+++ ...| +...+..+..+|...|+
T Consensus 60 lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~ 137 (208)
T 3urz_A 60 LALAYKKNRNYDKAYLFYKELLQK--APNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTAE 137 (208)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhH
Confidence 444444445555555555444432 1122344444444455555555555544444 2222 23344444444332221
Q ss_pred --HHHHHHHHHHHHccCCCCCcchHHHHHHHhhcCChHHHHHHHHHh
Q 007808 480 --VELAELALERLTELEPKNPANFVMLSNIYGDLGRWKDVARIKVAM 524 (589)
Q Consensus 480 --~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 524 (589)
.+.+...++++....|. ...+..++.++...|++++|+..+++.
T Consensus 138 ~~~~~~~~~~~~~~~~~~~-~~a~~~~g~~~~~~~~~~~A~~~~~~a 183 (208)
T 3urz_A 138 QEKKKLETDYKKLSSPTKM-QYARYRDGLSKLFTTRYEKARNSLQKV 183 (208)
T ss_dssp HHHHHHHHHHC---CCCHH-HHHHHHHHHHHHHHHTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCch-hHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 22333333333322221 112333444444445555555555444
No 117
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=99.04 E-value=2.6e-09 Score=85.16 Aligned_cols=115 Identities=16% Similarity=0.206 Sum_probs=93.0
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHhhC-CC-CCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHccCCCCCcchHHHHHHHh
Q 007808 432 IEHYGCMVDLLARAGRLAEAVDFVKRM-PI-EADAVIWANLLGSCRVYKNVELAELALERLTELEPKNPANFVMLSNIYG 509 (589)
Q Consensus 432 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 509 (589)
...+..++..+...|++++|++.++++ .. +.+...+..+...+...|++++|...++++++..|.++..+..++.++.
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~ 88 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYY 88 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHH
Confidence 456667777788888888888888776 22 3356677777888888899999999999999888888888889999999
Q ss_pred hcCChHHHHHHHHHhhhCCCccCCccceeeeCCeeeeeccccCCCchHHHHHHHHHHHHcc
Q 007808 510 DLGRWKDVARIKVAMRDTGFKKLPGCSSIEVNEVVMLGCLSRELDRKSIVRAEANMIKLLP 570 (589)
Q Consensus 510 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~ 570 (589)
..|++++|...++++. +.+|+++.++..++.++...|
T Consensus 89 ~~~~~~~A~~~~~~~~------------------------~~~~~~~~~~~~l~~~~~~~g 125 (125)
T 1na0_A 89 KQGDYDEAIEYYQKAL------------------------ELDPNNAEAKQNLGNAKQKQG 125 (125)
T ss_dssp HTTCHHHHHHHHHHHH------------------------HHCTTCHHHHHHHHHHHHHHC
T ss_pred HhcCHHHHHHHHHHHH------------------------HhCCCcHHHHHHHHHHHHhcc
Confidence 9999999999988885 677888888888888887654
No 118
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=99.03 E-value=2e-09 Score=95.15 Aligned_cols=159 Identities=12% Similarity=-0.026 Sum_probs=134.8
Q ss_pred HHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcC----CHHHHHH
Q 007808 378 AGALSLFHEMKNAGEMPDGITFIGILCACTHMGLVEEGLSYFQSMAMDYSIVPQIEHYGCMVDLLARAG----RLAEAVD 453 (589)
Q Consensus 378 ~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g----~~~~A~~ 453 (589)
.+|+.+|++..+.| +...+..+...|...+++++|..+|++..+. -++..+..|...|.. + ++++|++
T Consensus 3 ~eA~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~----g~~~a~~~lg~~y~~-~g~~~~~~~A~~ 74 (212)
T 3rjv_A 3 TEPGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQ----GDGDALALLAQLKIR-NPQQADYPQARQ 74 (212)
T ss_dssp -CTTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT----TCHHHHHHHHHHTTS-STTSCCHHHHHH
T ss_pred chHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc----CCHHHHHHHHHHHHc-CCCCCCHHHHHH
Confidence 35788899988864 6777888888899999999999999999753 367778888899988 6 8999999
Q ss_pred HHhhCCCCCCHHHHHHHHHHHhc----CCCHHHHHHHHHHHHccCCC--CCcchHHHHHHHhh----cCChHHHHHHHHH
Q 007808 454 FVKRMPIEADAVIWANLLGSCRV----YKNVELAELALERLTELEPK--NPANFVMLSNIYGD----LGRWKDVARIKVA 523 (589)
Q Consensus 454 ~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~p~--~~~~~~~l~~~~~~----~g~~~~A~~~~~~ 523 (589)
.|++.....+...+..+...|.. .+++++|++.|+++.+.+|. ++.++..|+.+|.. .+++++|+.++++
T Consensus 75 ~~~~A~~~g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~ 154 (212)
T 3rjv_A 75 LAEKAVEAGSKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKG 154 (212)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHH
Confidence 99998434567788888888877 89999999999999999983 47899999999999 8899999999999
Q ss_pred hhhCCCccCCccceeeeCCeeeeeccccCCCchHHHHHHHHHHHHc
Q 007808 524 MRDTGFKKLPGCSSIEVNEVVMLGCLSRELDRKSIVRAEANMIKLL 569 (589)
Q Consensus 524 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 569 (589)
.. ++ |+++.++..|+.+|..-
T Consensus 155 A~------------------------~~-~~~~~a~~~Lg~~y~~g 175 (212)
T 3rjv_A 155 SS------------------------SL-SRTGYAEYWAGMMFQQG 175 (212)
T ss_dssp HH------------------------HT-SCTTHHHHHHHHHHHHC
T ss_pred HH------------------------Hc-CCCHHHHHHHHHHHHcC
Confidence 85 34 67788899999999754
No 119
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=99.02 E-value=1.7e-09 Score=95.93 Aligned_cols=141 Identities=13% Similarity=0.004 Sum_probs=117.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHccCCCCCcchHHHHHHHhhcCC
Q 007808 434 HYGCMVDLLARAGRLAEAVDFVKRMPIEADAVIWANLLGSCRVYKNVELAELALERLTELEPKNPANFVMLSNIYGDLGR 513 (589)
Q Consensus 434 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 513 (589)
.+..+...+...|++++|++.++++. +|+...+..+..++...|++++|+..++++++++|+++.++..++.+|...|+
T Consensus 8 ~~~~~g~~~~~~~~~~~A~~~~~~a~-~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~~ 86 (213)
T 1hh8_A 8 SLWNEGVLAADKKDWKGALDAFSAVQ-DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEK 86 (213)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTSS-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHc-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHccc
Confidence 34557788899999999999999984 77888999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHhhhCCCccCCccceeeeCCeeeeeccccCCCchHHHHHHHHHHHHcccCCCCcchHhhhh
Q 007808 514 WKDVARIKVAMRDTGFKKLPGCSSIEVNEVVMLGCLSRELDRKSIVRAEANMIKLLPQNNHPLTFIVVIF 583 (589)
Q Consensus 514 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 583 (589)
+++|++.++++.+.. |....+. ....++..+|+.+.++..+|.+|..+|+.++|+..+....
T Consensus 87 ~~~A~~~~~~al~~~----~~~~~~~----~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 148 (213)
T 1hh8_A 87 YDLAIKDLKEALIQL----RGNQLID----YKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALAT 148 (213)
T ss_dssp HHHHHHHHHHHHHTT----TTCSEEE----CGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC----CCccHHH----HHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 999999999996432 2111111 1112445778888999999999999999988888766543
No 120
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=99.02 E-value=1.3e-08 Score=90.06 Aligned_cols=123 Identities=12% Similarity=0.007 Sum_probs=105.7
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHhhC-CC-CCCHHHHHHHHHHHh
Q 007808 398 TFIGILCACTHMGLVEEGLSYFQSMAMDYSIVPQIEHYGCMVDLLARAGRLAEAVDFVKRM-PI-EADAVIWANLLGSCR 475 (589)
Q Consensus 398 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~ 475 (589)
.+..+...+...|++++|...|+++. .|+...+..++.+|.+.|++++|++.++++ .. +.+...+..+..++.
T Consensus 8 ~~~~~g~~~~~~~~~~~A~~~~~~a~-----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~ 82 (213)
T 1hh8_A 8 SLWNEGVLAADKKDWKGALDAFSAVQ-----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYY 82 (213)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTSS-----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHc-----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHH
Confidence 34556667778899999999888773 467788888999999999999999999887 23 336778888889999
Q ss_pred cCCCHHHHHHHHHHHHccCCCCC----------------cchHHHHHHHhhcCChHHHHHHHHHhh
Q 007808 476 VYKNVELAELALERLTELEPKNP----------------ANFVMLSNIYGDLGRWKDVARIKVAMR 525 (589)
Q Consensus 476 ~~g~~~~A~~~~~~~~~~~p~~~----------------~~~~~l~~~~~~~g~~~~A~~~~~~~~ 525 (589)
..|++++|++.|++++++.|.+. .++..++.+|.+.|++++|.+.++++.
T Consensus 83 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 148 (213)
T 1hh8_A 83 QTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALAT 148 (213)
T ss_dssp HTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 99999999999999999998877 899999999999999999999999986
No 121
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=99.01 E-value=5.6e-09 Score=98.37 Aligned_cols=218 Identities=12% Similarity=0.011 Sum_probs=143.9
Q ss_pred CCChHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHh-cCChhHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHH
Q 007808 272 NGLFFEVLDAFKRMLTEGRVFPNDATIVTVLSACAR-LGALDFSKWVHVYAEYNGYQGNVCVGNALIDMYAKCGIIENAV 350 (589)
Q Consensus 272 ~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 350 (589)
.|++++|.+++++..+.. +.. +.+ .++++.|...|..+ +..|...|++++|.
T Consensus 4 ~~~~~eA~~~~~~a~k~~--~~~----------~~~~~~~~~~A~~~~~~a---------------~~~~~~~g~~~~A~ 56 (307)
T 2ifu_A 4 AQKISEAHEHIAKAEKYL--KTS----------FMKWKPDYDSAASEYAKA---------------AVAFKNAKQLEQAK 56 (307)
T ss_dssp HHHHHHHHHHHHHHHHHH--CCC----------SSSCSCCHHHHHHHHHHH---------------HHHHHHTTCHHHHH
T ss_pred cchHHHHHHHHHHHHHHc--ccc----------ccCCCCCHHHHHHHHHHH---------------HHHHHHcCCHHHHH
Confidence 456677777777666532 110 111 34555555554433 33455666666666
Q ss_pred HHHhhCCC-----CC----cchHHHHHHHHHhCCChHHHHHHHHHHHHCC---CCCC--HhHHHHHHHHHhccCcHHHHH
Q 007808 351 DVFNSMDT-----KD----LITWNTIISGLAMHGRGAGALSLFHEMKNAG---EMPD--GITFIGILCACTHMGLVEEGL 416 (589)
Q Consensus 351 ~~~~~~~~-----~~----~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~---~~p~--~~~~~~l~~~~~~~g~~~~A~ 416 (589)
..|.+... .+ ..+|+.+...|...|++++|+..|++..+.- -.|. ..++..+...|.. |++++|+
T Consensus 57 ~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~ 135 (307)
T 2ifu_A 57 DAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAV 135 (307)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHH
Confidence 66654431 11 2367778888888999999999988876521 1222 3467788888888 9999999
Q ss_pred HHHHHhHHhcCCCCC----hHHHHHHHHHHHhcCCHHHHHHHHhhCC-C---CCC----HHHHHHHHHHHhcCCCHHHHH
Q 007808 417 SYFQSMAMDYSIVPQ----IEHYGCMVDLLARAGRLAEAVDFVKRMP-I---EAD----AVIWANLLGSCRVYKNVELAE 484 (589)
Q Consensus 417 ~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~---~p~----~~~~~~l~~~~~~~g~~~~A~ 484 (589)
..|++.+.-..-..+ ..++..+..+|.+.|++++|++.|+++. + .++ ...+..++.++...|++++|.
T Consensus 136 ~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~ 215 (307)
T 2ifu_A 136 HLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQ 215 (307)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHH
Confidence 999988653211111 4578888999999999999999998872 1 122 235556667778889999999
Q ss_pred HHHHHHHccCCCCCcc-----hHHHHHHHhhcCChHHHHH
Q 007808 485 LALERLTELEPKNPAN-----FVMLSNIYGDLGRWKDVAR 519 (589)
Q Consensus 485 ~~~~~~~~~~p~~~~~-----~~~l~~~~~~~g~~~~A~~ 519 (589)
..|++++ ++|..... ...++..+ ..|+.+.+.+
T Consensus 216 ~~~~~al-~~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~ 253 (307)
T 2ifu_A 216 KCVRESY-SIPGFSGSEDCAALEDLLQAY-DEQDEEQLLR 253 (307)
T ss_dssp HHHHHHT-TSTTSTTSHHHHHHHHHHHHH-HTTCHHHHHH
T ss_pred HHHHHHh-CCCCCCCCHHHHHHHHHHHHH-HhcCHHHHHH
Confidence 9999999 99976543 33445545 5677666655
No 122
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=99.01 E-value=1.6e-09 Score=89.02 Aligned_cols=114 Identities=13% Similarity=0.033 Sum_probs=95.9
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHhhC-CCCC-CHHHHHHHHHHHhcCCCHHHHHHHHHHHHccCCCCCcchHHHHHHHh
Q 007808 432 IEHYGCMVDLLARAGRLAEAVDFVKRM-PIEA-DAVIWANLLGSCRVYKNVELAELALERLTELEPKNPANFVMLSNIYG 509 (589)
Q Consensus 432 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 509 (589)
...+..+...+.+.|++++|+..|+++ ...| +...|..+..++...|++++|+..|+++++++|+++..+..++.+|.
T Consensus 18 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 97 (142)
T 2xcb_A 18 LEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECHL 97 (142)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHH
Confidence 455666788889999999999999987 3344 67778888899999999999999999999999999999999999999
Q ss_pred hcCChHHHHHHHHHhhhCCCccCCccceeeeCCeeeeeccccCCCchHHHHHHHHHHHHc
Q 007808 510 DLGRWKDVARIKVAMRDTGFKKLPGCSSIEVNEVVMLGCLSRELDRKSIVRAEANMIKLL 569 (589)
Q Consensus 510 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 569 (589)
..|++++|++.+++.. +++|+++........+...+
T Consensus 98 ~~g~~~~A~~~~~~al------------------------~~~p~~~~~~~~~~~~~~~l 133 (142)
T 2xcb_A 98 QLGDLDGAESGFYSAR------------------------ALAAAQPAHEALAARAGAML 133 (142)
T ss_dssp HTTCHHHHHHHHHHHH------------------------HHHHTCGGGHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHH------------------------HhCCCCcchHHHHHHHHHHH
Confidence 9999999999999986 67777777666666555433
No 123
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.00 E-value=1.5e-08 Score=93.80 Aligned_cols=102 Identities=12% Similarity=0.085 Sum_probs=47.8
Q ss_pred CcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHH--HHHHHHhhC-CCCC-CHHHHHHHHHHHhcCCC------
Q 007808 410 GLVEEGLSYFQSMAMDYSIVPQIEHYGCMVDLLARAGRLA--EAVDFVKRM-PIEA-DAVIWANLLGSCRVYKN------ 479 (589)
Q Consensus 410 g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~--~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~------ 479 (589)
+++++++.+++++... .+.+...|+.-..++.+.|.++ +++++++++ ...| |...|+.....+...|.
T Consensus 124 ~~~~~EL~~~~~~l~~--~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~N~sAW~~R~~ll~~l~~~~~~~~ 201 (306)
T 3dra_A 124 FDPYREFDILEAMLSS--DPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLKNNSAWSHRFFLLFSKKHLATDNT 201 (306)
T ss_dssp CCTHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHSSGGGCCHHH
T ss_pred CCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccccchhhh
Confidence 3445555555554432 1233444444444444444444 455554444 1122 44444444444444443
Q ss_pred HHHHHHHHHHHHccCCCCCcchHHHHHHHhhcCC
Q 007808 480 VELAELALERLTELEPKNPANFVMLSNIYGDLGR 513 (589)
Q Consensus 480 ~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 513 (589)
++++++.+++++..+|.|..+|..+..++.+.|+
T Consensus 202 ~~eEl~~~~~aI~~~p~n~SaW~y~~~ll~~~~~ 235 (306)
T 3dra_A 202 IDEELNYVKDKIVKCPQNPSTWNYLLGIHERFDR 235 (306)
T ss_dssp HHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCC
Confidence 4555555555555555555555555555555554
No 124
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.00 E-value=8.7e-08 Score=88.69 Aligned_cols=213 Identities=12% Similarity=0.094 Sum_probs=119.6
Q ss_pred hHHHHHHHHHHHHcCCCCCc-HHHHHHHHHHHHhcC--ChhHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHH
Q 007808 275 FFEVLDAFKRMLTEGRVFPN-DATIVTVLSACARLG--ALDFSKWVHVYAEYNGYQGNVCVGNALIDMYAKCGIIENAVD 351 (589)
Q Consensus 275 ~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 351 (589)
.++|++.+..++..+ |+ ...++.--.++...+ +++++...+..+...+ |.+..+
T Consensus 49 s~~aL~~t~~~L~~n---P~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~n-Pk~y~a------------------- 105 (306)
T 3dra_A 49 SERALHITELGINEL---ASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDN-EKNYQI------------------- 105 (306)
T ss_dssp SHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHC-TTCCHH-------------------
T ss_pred CHHHHHHHHHHHHHC---cHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHC-cccHHH-------------------
Confidence 356777777776644 43 333444444444555 5555555555555543 223333
Q ss_pred HHhhCCCCCcchHHHHHHHH----HhC---CChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCcHH--HHHHHHHHh
Q 007808 352 VFNSMDTKDLITWNTIISGL----AMH---GRGAGALSLFHEMKNAGEMPDGITFIGILCACTHMGLVE--EGLSYFQSM 422 (589)
Q Consensus 352 ~~~~~~~~~~~~~~~l~~~~----~~~---~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~--~A~~~~~~~ 422 (589)
|+.-...+ ... +++++++++++++.+.. +-+...|..-...+.+.|.++ +++++++++
T Consensus 106 ------------W~~R~~iL~~~~~~l~~~~~~~~EL~~~~~~l~~~-pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~ 172 (306)
T 3dra_A 106 ------------WNYRQLIIGQIMELNNNDFDPYREFDILEAMLSSD-PKNHHVWSYRKWLVDTFDLHNDAKELSFVDKV 172 (306)
T ss_dssp ------------HHHHHHHHHHHHHHTTTCCCTHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHH
T ss_pred ------------HHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcccChHHHHHHHHHH
Confidence 33322222 222 45666666666666532 224455555555555555555 666666666
Q ss_pred HHhcCCCCChHHHHHHHHHHHhcCC------HHHHHHHHhhC-CCCC-CHHHHHHHHHHHhcCCCH-HHHHHHHHHHHcc
Q 007808 423 AMDYSIVPQIEHYGCMVDLLARAGR------LAEAVDFVKRM-PIEA-DAVIWANLLGSCRVYKNV-ELAELALERLTEL 493 (589)
Q Consensus 423 ~~~~~~~~~~~~~~~l~~~~~~~g~------~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~-~~A~~~~~~~~~~ 493 (589)
+.. .+-|...|+.-..++.+.|+ ++++++.++++ ...| |...|+.+...+.+.|+. +....++++++++
T Consensus 173 i~~--d~~N~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~ 250 (306)
T 3dra_A 173 IDT--DLKNNSAWSHRFFLLFSKKHLATDNTIDEELNYVKDKIVKCPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDL 250 (306)
T ss_dssp HHH--CTTCHHHHHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEG
T ss_pred HHh--CCCCHHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhc
Confidence 542 23345555555555555554 66666666665 2233 566666666666666653 3345566666665
Q ss_pred C---CCCCcchHHHHHHHhhcCChHHHHHHHHHhh
Q 007808 494 E---PKNPANFVMLSNIYGDLGRWKDVARIKVAMR 525 (589)
Q Consensus 494 ~---p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 525 (589)
+ |.++.++..++.+|.+.|+.++|+++++.+.
T Consensus 251 ~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~l~ 285 (306)
T 3dra_A 251 EKDQVTSSFALETLAKIYTQQKKYNESRTVYDLLK 285 (306)
T ss_dssp GGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred cCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHH
Confidence 5 6667777777777777777777777777774
No 125
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.98 E-value=3.4e-09 Score=84.72 Aligned_cols=115 Identities=10% Similarity=0.007 Sum_probs=96.1
Q ss_pred CCCC-HhHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHhhC-CCCC-CHHHHH
Q 007808 392 EMPD-GITFIGILCACTHMGLVEEGLSYFQSMAMDYSIVPQIEHYGCMVDLLARAGRLAEAVDFVKRM-PIEA-DAVIWA 468 (589)
Q Consensus 392 ~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~ 468 (589)
+.|+ ...+......+.+.|++++|++.|+++++. .+.+...|..+..+|.+.|++++|++.++++ .+.| +...|.
T Consensus 8 inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~ 85 (126)
T 4gco_A 8 INPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKR--DPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYI 85 (126)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHH
Confidence 4554 346777888899999999999999988753 2345778888999999999999999999987 3444 577888
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHccCCCCCcchHHHHHHH
Q 007808 469 NLLGSCRVYKNVELAELALERLTELEPKNPANFVMLSNIY 508 (589)
Q Consensus 469 ~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 508 (589)
.+..++...|++++|++.|+++++++|+++.++..|+.++
T Consensus 86 ~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~~l 125 (126)
T 4gco_A 86 RKAACLVAMREWSKAQRAYEDALQVDPSNEEAREGVRNCL 125 (126)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHC
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHCcCCHHHHHHHHHhc
Confidence 8999999999999999999999999999999888887764
No 126
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.96 E-value=2.4e-09 Score=100.84 Aligned_cols=196 Identities=9% Similarity=-0.016 Sum_probs=148.9
Q ss_pred cCChhHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHhhCCCCCcchHHHHHHHHHhCCChHHHHHHHHHH
Q 007808 308 LGALDFSKWVHVYAEYNGYQGNVCVGNALIDMYAKCGIIENAVDVFNSMDTKDLITWNTIISGLAMHGRGAGALSLFHEM 387 (589)
Q Consensus 308 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m 387 (589)
.|++++|.+++++..+.... . .+...++++.|...|.+ ....|...|++++|...|.+.
T Consensus 4 ~~~~~eA~~~~~~a~k~~~~-~---------~~~~~~~~~~A~~~~~~-----------a~~~~~~~g~~~~A~~~~~~a 62 (307)
T 2ifu_A 4 AQKISEAHEHIAKAEKYLKT-S---------FMKWKPDYDSAASEYAK-----------AAVAFKNAKQLEQAKDAYLQE 62 (307)
T ss_dssp HHHHHHHHHHHHHHHHHHCC-C---------SSSCSCCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHccc-c---------ccCCCCCHHHHHHHHHH-----------HHHHHHHcCCHHHHHHHHHHH
Confidence 56778888888887764321 1 01115788888888775 467788999999999999987
Q ss_pred HHCCC---CC--CHhHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCC--CC--hHHHHHHHHHHHhcCCHHHHHHHHhhC
Q 007808 388 KNAGE---MP--DGITFIGILCACTHMGLVEEGLSYFQSMAMDYSIV--PQ--IEHYGCMVDLLARAGRLAEAVDFVKRM 458 (589)
Q Consensus 388 ~~~~~---~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~ 458 (589)
.+... .+ -..+|..+...|...|++++|+..|++.+.-..-. +. ..++..+..+|.. |++++|++.+++.
T Consensus 63 l~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~A 141 (307)
T 2ifu_A 63 AEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQA 141 (307)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHH
Confidence 75211 11 13478888899999999999999999876532111 11 4577888999988 9999999999887
Q ss_pred C-CCC---C----HHHHHHHHHHHhcCCCHHHHHHHHHHHHccCCCCCc------chHHHHHHHhhcCChHHHHHHHHHh
Q 007808 459 P-IEA---D----AVIWANLLGSCRVYKNVELAELALERLTELEPKNPA------NFVMLSNIYGDLGRWKDVARIKVAM 524 (589)
Q Consensus 459 ~-~~p---~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~------~~~~l~~~~~~~g~~~~A~~~~~~~ 524 (589)
. +.| + ..++..+...+...|++++|+..|++++++.|.+.. .+..++.++...|++++|+..+++.
T Consensus 142 l~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~a 221 (307)
T 2ifu_A 142 AAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRES 221 (307)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 1 111 1 456778889999999999999999999998765432 6777888899999999999999998
Q ss_pred h
Q 007808 525 R 525 (589)
Q Consensus 525 ~ 525 (589)
.
T Consensus 222 l 222 (307)
T 2ifu_A 222 Y 222 (307)
T ss_dssp T
T ss_pred h
Confidence 5
No 127
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.96 E-value=2e-09 Score=90.96 Aligned_cols=125 Identities=8% Similarity=-0.033 Sum_probs=68.8
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHhhC-CCCC-CHHHHHHHHHHHh
Q 007808 398 TFIGILCACTHMGLVEEGLSYFQSMAMDYSIVPQIEHYGCMVDLLARAGRLAEAVDFVKRM-PIEA-DAVIWANLLGSCR 475 (589)
Q Consensus 398 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~ 475 (589)
.+..+...+...|++++|...+++.... .+.+...+..++.++...|++++|++.+++. ...| +...+..+..++.
T Consensus 15 ~~~~~a~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~ 92 (166)
T 1a17_A 15 ELKTQANDYFKAKDYENAIKFYSQAIEL--NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNM 92 (166)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 3445555556666666666666665542 1223455555566666666666666666554 2222 3445555555566
Q ss_pred cCCCHHHHHHHHHHHHccCCCCCcchHHHHHH--HhhcCChHHHHHHHHHh
Q 007808 476 VYKNVELAELALERLTELEPKNPANFVMLSNI--YGDLGRWKDVARIKVAM 524 (589)
Q Consensus 476 ~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~--~~~~g~~~~A~~~~~~~ 524 (589)
..|++++|...+++++++.|.++..+..+..+ +.+.|++++|++.+++.
T Consensus 93 ~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 143 (166)
T 1a17_A 93 ALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHK 143 (166)
T ss_dssp HTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccch
Confidence 66666666666666666666555555333333 55556666666655544
No 128
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.95 E-value=7.3e-09 Score=81.56 Aligned_cols=112 Identities=12% Similarity=0.116 Sum_probs=94.5
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHhhC-CCCC-CHHHHHHHHHHHhcCCCHHHHHHHHHHHHccCCCCCcchHHHHHHHh
Q 007808 432 IEHYGCMVDLLARAGRLAEAVDFVKRM-PIEA-DAVIWANLLGSCRVYKNVELAELALERLTELEPKNPANFVMLSNIYG 509 (589)
Q Consensus 432 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 509 (589)
...+..++..+...|++++|...+++. ...| +...+..+...+...|++++|...++++++..|+++..+..++.++.
T Consensus 4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~ 83 (118)
T 1elw_A 4 VNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALE 83 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 455677788888888888888888877 2333 67777888888889999999999999999999998999999999999
Q ss_pred hcCChHHHHHHHHHhhhCCCccCCccceeeeCCeeeeeccccCCCchHHHHHHHHHHH
Q 007808 510 DLGRWKDVARIKVAMRDTGFKKLPGCSSIEVNEVVMLGCLSRELDRKSIVRAEANMIK 567 (589)
Q Consensus 510 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~~~ 567 (589)
..|++++|.+.+++.. +.+|+++.++..++.+..
T Consensus 84 ~~~~~~~A~~~~~~~~------------------------~~~~~~~~~~~~l~~~~~ 117 (118)
T 1elw_A 84 FLNRFEEAKRTYEEGL------------------------KHEANNPQLKEGLQNMEA 117 (118)
T ss_dssp HTTCHHHHHHHHHHHH------------------------TTCTTCHHHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHHH------------------------HcCCCCHHHHHHHHHhhc
Confidence 9999999999999886 678999999888887753
No 129
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.94 E-value=8.6e-09 Score=85.08 Aligned_cols=113 Identities=18% Similarity=0.112 Sum_probs=98.8
Q ss_pred ChHHHHHHHHHHHhcCCHHHHHHHHhhC-CCCCC----HHHHHHHHHHHhcCCCHHHHHHHHHHHHccCCCCCcchHHHH
Q 007808 431 QIEHYGCMVDLLARAGRLAEAVDFVKRM-PIEAD----AVIWANLLGSCRVYKNVELAELALERLTELEPKNPANFVMLS 505 (589)
Q Consensus 431 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~ 505 (589)
+...+..+...+...|++++|++.|++. ...|+ ...+..+..++...|++++|+..++++++++|+++..+..++
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a 106 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRRS 106 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHHHH
Confidence 4667778888888999999999988887 55676 567777888899999999999999999999999999999999
Q ss_pred HHHhhcCChHHHHHHHHHhhhCCCccCCccceeeeCCeeeeeccccCCCchHHHHHHHHHHH
Q 007808 506 NIYGDLGRWKDVARIKVAMRDTGFKKLPGCSSIEVNEVVMLGCLSRELDRKSIVRAEANMIK 567 (589)
Q Consensus 506 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~~~ 567 (589)
.+|...|++++|...+++.. +++|+++.+...++.+..
T Consensus 107 ~~~~~~~~~~~A~~~~~~al------------------------~~~p~~~~~~~~l~~~~~ 144 (148)
T 2dba_A 107 QALEKLGRLDQAVLDLQRCV------------------------SLEPKNKVFQEALRNISG 144 (148)
T ss_dssp HHHHHHTCHHHHHHHHHHHH------------------------HHCSSCHHHHHHHHHHHC
T ss_pred HHHHHcCCHHHHHHHHHHHH------------------------HcCCCcHHHHHHHHHHHh
Confidence 99999999999999999886 788999999988888764
No 130
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.93 E-value=3.7e-09 Score=89.28 Aligned_cols=94 Identities=14% Similarity=0.096 Sum_probs=55.4
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHhhC-CCCC-CHHHHHHHHHHHhcCCCHHHHHHHHHHHHccCCCCCcchHHHHHHHh
Q 007808 432 IEHYGCMVDLLARAGRLAEAVDFVKRM-PIEA-DAVIWANLLGSCRVYKNVELAELALERLTELEPKNPANFVMLSNIYG 509 (589)
Q Consensus 432 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 509 (589)
...+..+...+.+.|++++|++.|++. ...| +...|..+..+|...|++++|+..++++++++|+++.+|..++.+|.
T Consensus 11 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 90 (164)
T 3sz7_A 11 SDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLARF 90 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 344455555555666666666665554 2223 44555555566666666666666666666666666666666666666
Q ss_pred hcCChHHHHHHHHHhh
Q 007808 510 DLGRWKDVARIKVAMR 525 (589)
Q Consensus 510 ~~g~~~~A~~~~~~~~ 525 (589)
..|++++|++.+++..
T Consensus 91 ~~g~~~~A~~~~~~al 106 (164)
T 3sz7_A 91 DMADYKGAKEAYEKGI 106 (164)
T ss_dssp HTTCHHHHHHHHHHHH
T ss_pred HccCHHHHHHHHHHHH
Confidence 6666666666666654
No 131
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.93 E-value=5.8e-08 Score=90.70 Aligned_cols=159 Identities=8% Similarity=-0.011 Sum_probs=121.4
Q ss_pred HHHHHHhCCChHHHHHHHHHHHHCCC-CCCHh----HHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC----hHHHHH
Q 007808 367 IISGLAMHGRGAGALSLFHEMKNAGE-MPDGI----TFIGILCACTHMGLVEEGLSYFQSMAMDYSIVPQ----IEHYGC 437 (589)
Q Consensus 367 l~~~~~~~~~~~~A~~~~~~m~~~~~-~p~~~----~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~~ 437 (589)
.+..+...|++++|..++++..+... .|+.. .+..+...+...|++++|...++++.....-.++ ..+++.
T Consensus 81 ~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~ 160 (293)
T 3u3w_A 81 QVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENA 160 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence 46678889999999999999887321 22211 2334666777888999999999998763222233 336888
Q ss_pred HHHHHHhcCCHHHHHHHHhhCC-----CCCC----HHHHHHHHHHHhcCCCHHHHHHHHHHHHccCCCC------CcchH
Q 007808 438 MVDLLARAGRLAEAVDFVKRMP-----IEAD----AVIWANLLGSCRVYKNVELAELALERLTELEPKN------PANFV 502 (589)
Q Consensus 438 l~~~~~~~g~~~~A~~~~~~~~-----~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~------~~~~~ 502 (589)
++.+|...|++++|+..++++. .+.+ ..++..+...|.+.|++++|...+++++++.+.. ..+|.
T Consensus 161 lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~ 240 (293)
T 3u3w_A 161 IANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYY 240 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 9999999999999999888762 1122 2467788899999999999999999999865432 45889
Q ss_pred HHHHHHhhcCC-hHHHHHHHHHhh
Q 007808 503 MLSNIYGDLGR-WKDVARIKVAMR 525 (589)
Q Consensus 503 ~l~~~~~~~g~-~~~A~~~~~~~~ 525 (589)
.++.+|.+.|+ +++|++.+++..
T Consensus 241 ~lg~~~~~~g~~~~~A~~~~~~Al 264 (293)
T 3u3w_A 241 QRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHH
Confidence 99999999995 699999998875
No 132
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.92 E-value=6.5e-10 Score=97.34 Aligned_cols=144 Identities=10% Similarity=-0.024 Sum_probs=105.8
Q ss_pred hccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHhhC-CCCC-C----------------HHHHH
Q 007808 407 THMGLVEEGLSYFQSMAMDYSIVPQIEHYGCMVDLLARAGRLAEAVDFVKRM-PIEA-D----------------AVIWA 468 (589)
Q Consensus 407 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~----------------~~~~~ 468 (589)
...|+++.+.+.|+..... .......+..+...+.+.|++++|++.|+++ ...| + ...+.
T Consensus 15 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (198)
T 2fbn_A 15 ENLYFQGAKKSIYDYTDEE--KVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNL 92 (198)
T ss_dssp -------CCCSGGGCCHHH--HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHH
T ss_pred hhhhhccccCchhhCCHHH--HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHH
Confidence 3345555555554432211 0112345566677777788888888877765 2222 1 26777
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHccCCCCCcchHHHHHHHhhcCChHHHHHHHHHhhhCCCccCCccceeeeCCeeeeec
Q 007808 469 NLLGSCRVYKNVELAELALERLTELEPKNPANFVMLSNIYGDLGRWKDVARIKVAMRDTGFKKLPGCSSIEVNEVVMLGC 548 (589)
Q Consensus 469 ~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 548 (589)
.+..++...|++++|+..++++++++|+++.++..++.+|...|++++|++.+++..
T Consensus 93 ~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al----------------------- 149 (198)
T 2fbn_A 93 NLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAA----------------------- 149 (198)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH-----------------------
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHH-----------------------
Confidence 788889999999999999999999999999999999999999999999999999985
Q ss_pred cccCCCchHHHHHHHHHHHHcccCCCCc
Q 007808 549 LSRELDRKSIVRAEANMIKLLPQNNHPL 576 (589)
Q Consensus 549 ~~~~p~~~~~~~~l~~~~~~~~~~~~~~ 576 (589)
+++|+++.++..++.++..+|+..++.
T Consensus 150 -~~~p~~~~~~~~l~~~~~~~~~~~~~~ 176 (198)
T 2fbn_A 150 -SLNPNNLDIRNSYELCVNKLKEARKKD 176 (198)
T ss_dssp -HHSTTCHHHHHHHHHHHHHHHHHHC--
T ss_pred -HHCCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 789999999999999999998877755
No 133
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.92 E-value=1.7e-09 Score=103.14 Aligned_cols=87 Identities=9% Similarity=-0.074 Sum_probs=54.5
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHccCCCCCcchHHHHHHHhhcCChHHHHHHHHHhhhCCCccCCccceeeeCCee
Q 007808 465 VIWANLLGSCRVYKNVELAELALERLTELEPKNPANFVMLSNIYGDLGRWKDVARIKVAMRDTGFKKLPGCSSIEVNEVV 544 (589)
Q Consensus 465 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 544 (589)
..|..+..++.+.|++++|+..++++++++|+++.++..++.+|...|++++|+..++++.
T Consensus 197 ~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al------------------- 257 (336)
T 1p5q_A 197 ASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVL------------------- 257 (336)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-------------------
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH-------------------
Confidence 4555555666666666666666666666666666666666666666666666666666654
Q ss_pred eeeccccCCCchHHHHHHHHHHHHcccCCCC
Q 007808 545 MLGCLSRELDRKSIVRAEANMIKLLPQNNHP 575 (589)
Q Consensus 545 ~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~ 575 (589)
+++|+++.++..++.++..+|+..++
T Consensus 258 -----~l~P~~~~a~~~l~~~~~~~~~~~~a 283 (336)
T 1p5q_A 258 -----QLYPNNKAAKTQLAVCQQRIRRQLAR 283 (336)
T ss_dssp -----HHCSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred -----HHCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 55666666666666666666665544
No 134
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.92 E-value=2.3e-09 Score=91.87 Aligned_cols=116 Identities=8% Similarity=0.055 Sum_probs=70.5
Q ss_pred ccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHhhC-CCCC-CHHHHHHHHHH-HhcCCCH--HH
Q 007808 408 HMGLVEEGLSYFQSMAMDYSIVPQIEHYGCMVDLLARAGRLAEAVDFVKRM-PIEA-DAVIWANLLGS-CRVYKNV--EL 482 (589)
Q Consensus 408 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~-~~~~g~~--~~ 482 (589)
..|++++|...+++.... .+.+...|..+...|...|++++|+..++++ ...| +...+..+..+ +...|++ ++
T Consensus 22 ~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~~ 99 (177)
T 2e2e_A 22 SQQNPEAQLQALQDKIRA--NPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQ 99 (177)
T ss_dssp -----CCCCHHHHHHHHH--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCHH
T ss_pred hccCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchHH
Confidence 345566666666655442 1234455666666666666666666666665 2222 44555555555 5566776 77
Q ss_pred HHHHHHHHHccCCCCCcchHHHHHHHhhcCChHHHHHHHHHhh
Q 007808 483 AELALERLTELEPKNPANFVMLSNIYGDLGRWKDVARIKVAMR 525 (589)
Q Consensus 483 A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 525 (589)
|...++++++.+|+++.++..++.+|...|++++|+..++++.
T Consensus 100 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 142 (177)
T 2e2e_A 100 TRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVM 142 (177)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 7777777777777777777777777777777777777777764
No 135
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.90 E-value=6.7e-10 Score=91.82 Aligned_cols=99 Identities=10% Similarity=-0.013 Sum_probs=89.5
Q ss_pred CCC-CHHHHHHHHHHHhcCCCHHHHHHHHHHHHccCCCCCcchHHHHHHHhhcCChHHHHHHHHHhhhCCCccCCcccee
Q 007808 460 IEA-DAVIWANLLGSCRVYKNVELAELALERLTELEPKNPANFVMLSNIYGDLGRWKDVARIKVAMRDTGFKKLPGCSSI 538 (589)
Q Consensus 460 ~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 538 (589)
..| +...+..+...+...|++++|+..|+++++++|+++..+..++.+|...|++++|++.++++.
T Consensus 16 ~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al------------- 82 (148)
T 2vgx_A 16 ISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGA------------- 82 (148)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-------------
T ss_pred CCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHH-------------
Confidence 445 345667777889999999999999999999999999999999999999999999999999986
Q ss_pred eeCCeeeeeccccCCCchHHHHHHHHHHHHcccCCCCcchHhhh
Q 007808 539 EVNEVVMLGCLSRELDRKSIVRAEANMIKLLPQNNHPLTFIVVI 582 (589)
Q Consensus 539 ~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 582 (589)
+++|+++.++..+|.+|..+|+.++|+..+...
T Consensus 83 -----------~l~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a 115 (148)
T 2vgx_A 83 -----------VMDIXEPRFPFHAAECLLQXGELAEAESGLFLA 115 (148)
T ss_dssp -----------HHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred -----------hcCCCCchHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 789999999999999999999999998877654
No 136
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=98.90 E-value=5.6e-09 Score=81.36 Aligned_cols=100 Identities=9% Similarity=-0.025 Sum_probs=91.5
Q ss_pred CHHHHHHHHHHHhcCCCHHHHHHHHHHHHccCCCCCcchHHHHHHHhhcCChHHHHHHHHHhhhCCCccCCccceeeeCC
Q 007808 463 DAVIWANLLGSCRVYKNVELAELALERLTELEPKNPANFVMLSNIYGDLGRWKDVARIKVAMRDTGFKKLPGCSSIEVNE 542 (589)
Q Consensus 463 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 542 (589)
+...+..+...+...|++++|++.|+++++++|+++.++..++.+|.+.|++++|++.+++..
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al----------------- 65 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGL----------------- 65 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-----------------
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHH-----------------
Confidence 456777888999999999999999999999999999999999999999999999999999986
Q ss_pred eeeeeccccCCCc------hHHHHHHHHHHHHcccCCCCcchHhhhhhcc
Q 007808 543 VVMLGCLSRELDR------KSIVRAEANMIKLLPQNNHPLTFIVVIFSTF 586 (589)
Q Consensus 543 ~~~~~~~~~~p~~------~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 586 (589)
+++|++ +.++..++.++..+|+.+.++..+..+-+.|
T Consensus 66 -------~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 108 (111)
T 2l6j_A 66 -------RYTSTAEHVAIRSKLQYRLELAQGAVGSVQIPVVEVDELPEGY 108 (111)
T ss_dssp -------TSCSSTTSHHHHHHHHHHHHHHHHHHHCCCCCSSSSSSCSSSS
T ss_pred -------HhCCCccHHHHHHHHHHHHHHHHHHHHhHhhhHhHHHHhHHHh
Confidence 788998 8999999999999999999999887776655
No 137
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.90 E-value=2.6e-08 Score=93.06 Aligned_cols=163 Identities=8% Similarity=-0.041 Sum_probs=122.0
Q ss_pred hHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCH-----hHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCC--CC--hH
Q 007808 363 TWNTIISGLAMHGRGAGALSLFHEMKNAGEMPDG-----ITFIGILCACTHMGLVEEGLSYFQSMAMDYSIV--PQ--IE 433 (589)
Q Consensus 363 ~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~-----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~--~~ 433 (589)
.+...+..+...|++++|++.+++..+.....+. ..+..+...+...|++++|...++++....... +. ..
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 156 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY 156 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence 3445667788899999999999888875322111 123445566778899999999998886432111 11 45
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhhCC----CCCC-----HHHHHHHHHHHhcCCCHHHHHHHHHHHHccCCC------CC
Q 007808 434 HYGCMVDLLARAGRLAEAVDFVKRMP----IEAD-----AVIWANLLGSCRVYKNVELAELALERLTELEPK------NP 498 (589)
Q Consensus 434 ~~~~l~~~~~~~g~~~~A~~~~~~~~----~~p~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~------~~ 498 (589)
+++.++..|...|++++|+..++++. ..|+ ..++..+...|...|++++|+..+++++++.+. -.
T Consensus 157 ~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~ 236 (293)
T 2qfc_A 157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIG 236 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 78889999999999999999998762 2222 257788889999999999999999999986432 14
Q ss_pred cchHHHHHHHhhcCChHHH-HHHHHHhh
Q 007808 499 ANFVMLSNIYGDLGRWKDV-ARIKVAMR 525 (589)
Q Consensus 499 ~~~~~l~~~~~~~g~~~~A-~~~~~~~~ 525 (589)
.+|..++.+|.+.|++++| ...+++..
T Consensus 237 ~~~~~lg~~y~~~g~~~~Ai~~~~~~Al 264 (293)
T 2qfc_A 237 QLYYQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 5788999999999999999 77787764
No 138
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.90 E-value=2.7e-08 Score=89.83 Aligned_cols=179 Identities=10% Similarity=-0.033 Sum_probs=118.4
Q ss_pred hcCChHHHHHHHhhCCC--C-CcchHHHH-------HHHHHhCCChHHHHHHHHHHHHCCCCCCH---------------
Q 007808 342 KCGIIENAVDVFNSMDT--K-DLITWNTI-------ISGLAMHGRGAGALSLFHEMKNAGEMPDG--------------- 396 (589)
Q Consensus 342 ~~g~~~~A~~~~~~~~~--~-~~~~~~~l-------~~~~~~~~~~~~A~~~~~~m~~~~~~p~~--------------- 396 (589)
..++...|.+.|.++.. | ....|..+ ...+...++..+++..+++-.. +.|+.
T Consensus 18 ~~~d~~~A~~~F~~a~~~dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~--l~p~~l~a~~~~~g~y~~~~ 95 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQ--ISMSTLNARIAIGGLYGDIT 95 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTT--CCGGGGCCEEECCTTTCCCE
T ss_pred cCCCHHHHHHHHHHHHHhChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhc--CChhhhhhhhccCCcccccc
Confidence 35566666666665542 2 33455555 3444444555555555554443 23321
Q ss_pred -------hHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCCH----H
Q 007808 397 -------ITFIGILCACTHMGLVEEGLSYFQSMAMDYSIVPQIEHYGCMVDLLARAGRLAEAVDFVKRMPIEADA----V 465 (589)
Q Consensus 397 -------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~----~ 465 (589)
.....+...+...|++++|.++|+.+.. ..|+......+...+.+.+++++|+..|+.....|+. .
T Consensus 96 ~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~---~~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~~ 172 (282)
T 4f3v_A 96 YPVTSPLAITMGFAACEAAQGNYADAMEALEAAPV---AGSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGA 172 (282)
T ss_dssp EECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCC---TTCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHHH
T ss_pred cccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHh---cCCchHHHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccHHH
Confidence 1223456667788889999888887753 2354435556667888889999999988877433433 3
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHccC--CC-CCcchHHHHHHHhhcCChHHHHHHHHHhh
Q 007808 466 IWANLLGSCRVYKNVELAELALERLTELE--PK-NPANFVMLSNIYGDLGRWKDVARIKVAMR 525 (589)
Q Consensus 466 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 525 (589)
.+..+..++...|++++|+..|+++.... |. .+.....++.++.+.|+.++|...|+++.
T Consensus 173 a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~ 235 (282)
T 4f3v_A 173 AGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQ 235 (282)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 56667788888999999999999887533 43 34577888888999999999999998886
No 139
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.89 E-value=4.3e-09 Score=88.62 Aligned_cols=89 Identities=8% Similarity=-0.019 Sum_probs=80.1
Q ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHccCCCCCcchHHHHHHHhhcCChHHHHHHHHHhhhCCCccCCccceeeeCCe
Q 007808 464 AVIWANLLGSCRVYKNVELAELALERLTELEPKNPANFVMLSNIYGDLGRWKDVARIKVAMRDTGFKKLPGCSSIEVNEV 543 (589)
Q Consensus 464 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 543 (589)
...|..+..+|.+.|++++|+..++++++++|+++.+|..++.+|...|++++|+..+++..
T Consensus 63 ~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al------------------ 124 (162)
T 3rkv_A 63 IPLYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLL------------------ 124 (162)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH------------------
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHH------------------
Confidence 35677888999999999999999999999999999999999999999999999999999986
Q ss_pred eeeeccccCCCch-HHHHHHHHHHHHcccCCCCc
Q 007808 544 VMLGCLSRELDRK-SIVRAEANMIKLLPQNNHPL 576 (589)
Q Consensus 544 ~~~~~~~~~p~~~-~~~~~l~~~~~~~~~~~~~~ 576 (589)
+++|+++ .+...|+.+...+++..+..
T Consensus 125 ------~l~p~~~~~~~~~l~~~~~~~~~~~~~~ 152 (162)
T 3rkv_A 125 ------RNHPAAASVVAREMKIVTERRAEKKADS 152 (162)
T ss_dssp ------HHCGGGHHHHHHHHHHHHHHHHHHTTSS
T ss_pred ------hcCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 7899999 88889999988877665544
No 140
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.86 E-value=1.2e-08 Score=81.61 Aligned_cols=93 Identities=8% Similarity=-0.036 Sum_probs=80.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHhhC-CCCC-CHHHHHHHHHHHhcCCCHHHHHHHHHHHHccCCCCCc-------chHH
Q 007808 433 EHYGCMVDLLARAGRLAEAVDFVKRM-PIEA-DAVIWANLLGSCRVYKNVELAELALERLTELEPKNPA-------NFVM 503 (589)
Q Consensus 433 ~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~-------~~~~ 503 (589)
..+..++..+.+.|++++|++.|+++ .+.| +...|..+..+|...|++++|++.++++++++|+++. +|..
T Consensus 9 ~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~ 88 (127)
T 4gcn_A 9 IAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSR 88 (127)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHH
Confidence 45677889999999999999999987 4455 5778888999999999999999999999999987654 5677
Q ss_pred HHHHHhhcCChHHHHHHHHHhh
Q 007808 504 LSNIYGDLGRWKDVARIKVAMR 525 (589)
Q Consensus 504 l~~~~~~~g~~~~A~~~~~~~~ 525 (589)
++.++...|++++|++.+++..
T Consensus 89 lg~~~~~~~~~~~A~~~~~kal 110 (127)
T 4gcn_A 89 AGNAFQKQNDLSLAVQWFHRSL 110 (127)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHH
Confidence 8888999999999999999885
No 141
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.84 E-value=9.1e-09 Score=83.74 Aligned_cols=116 Identities=16% Similarity=0.039 Sum_probs=94.4
Q ss_pred CChHHHHHHHHHHHhcCCHHHHHHHHhhC-CCCC-CHHHHHHHHHHHhcCCCHHHHHHHHHHHHccCCCCCcchHHHHHH
Q 007808 430 PQIEHYGCMVDLLARAGRLAEAVDFVKRM-PIEA-DAVIWANLLGSCRVYKNVELAELALERLTELEPKNPANFVMLSNI 507 (589)
Q Consensus 430 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 507 (589)
.+...+..+...+...|++++|+..|++. ...| +...+..+..++...|++++|...++++++++|+++.++..++.+
T Consensus 7 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 86 (137)
T 3q49_B 7 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQC 86 (137)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHHH
Confidence 45677788888888888888888888876 3334 567788888889999999999999999999999999999999999
Q ss_pred HhhcCChHHHHHHHHHhhhCCCccCCccceeeeCCeeeeeccccCCC-----chHHHHHHHHHHHHc
Q 007808 508 YGDLGRWKDVARIKVAMRDTGFKKLPGCSSIEVNEVVMLGCLSRELD-----RKSIVRAEANMIKLL 569 (589)
Q Consensus 508 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~-----~~~~~~~l~~~~~~~ 569 (589)
|...|++++|+..++++. +++|+ ++.+...+..+..+.
T Consensus 87 ~~~~~~~~~A~~~~~~a~------------------------~~~p~~~~~~~~~~~~~l~~~~~~~ 129 (137)
T 3q49_B 87 QLEMESYDEAIANLQRAY------------------------SLAKEQRLNFGDDIPSALRIAKKKR 129 (137)
T ss_dssp HHHTTCHHHHHHHHHHHH------------------------HHHHHTTCCCTTHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHH------------------------HHChhHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999885 44444 677777777666544
No 142
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.83 E-value=3.7e-08 Score=83.04 Aligned_cols=130 Identities=11% Similarity=-0.051 Sum_probs=104.8
Q ss_pred cchHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHH
Q 007808 361 LITWNTIISGLAMHGRGAGALSLFHEMKNAGEMPDGITFIGILCACTHMGLVEEGLSYFQSMAMDYSIVPQIEHYGCMVD 440 (589)
Q Consensus 361 ~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~ 440 (589)
...+..+...+...|++++|...|++..+.. +.+...+..+..++...|++++|...+++.... .+.+...+..++.
T Consensus 13 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~a~ 89 (166)
T 1a17_A 13 AEELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIEL--DKKYIKGYYRRAA 89 (166)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcccHHHHHHHHH
Confidence 4567888889999999999999999998852 336778888999999999999999999999764 2345778889999
Q ss_pred HHHhcCCHHHHHHHHhhC-CCCC-CHHHHHHH--HHHHhcCCCHHHHHHHHHHHHcc
Q 007808 441 LLARAGRLAEAVDFVKRM-PIEA-DAVIWANL--LGSCRVYKNVELAELALERLTEL 493 (589)
Q Consensus 441 ~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l--~~~~~~~g~~~~A~~~~~~~~~~ 493 (589)
+|...|++++|.+.++++ ...| +...+..+ ...+...|++++|...+++..++
T Consensus 90 ~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 146 (166)
T 1a17_A 90 SNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRSV 146 (166)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHHH
Confidence 999999999999999987 3334 44445333 34477889999999999887663
No 143
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.83 E-value=2.6e-06 Score=85.29 Aligned_cols=365 Identities=14% Similarity=0.032 Sum_probs=196.9
Q ss_pred CC-ChhHHHHHHHHhhhCCCCCCcccHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchHHHhHHHHHHHcCCC-hHHHH
Q 007808 78 NE-FHRTVVVLFTQMKKLDAMPNCFTFPIVLKSCVKINALREGEELHCLVLKNGFRANIFVGTALIELYSTGKA-IEAAY 155 (589)
Q Consensus 78 ~~-~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~-~~~A~ 155 (589)
.| ++..|..+|+.+... -|. ++.+.+.++|++.+.. .|+...|...+....+.++ .+...
T Consensus 7 ~~~~i~~aR~vyer~l~~--~P~--------------~~~e~~~~iferal~~--~ps~~LW~~Y~~f~~~~~~~~~~i~ 68 (493)
T 2uy1_A 7 MGVELSSPSAIMEHARRL--YMS--------------KDYRSLESLFGRCLKK--SYNLDLWMLYIEYVRKVSQKKFKLY 68 (493)
T ss_dssp -----CCHHHHHHHHHHH--HHT--------------TCHHHHHHHHHHHSTT--CCCHHHHHHHHHHHHHHC----CTH
T ss_pred cCcchHHHHHHHHHHHHH--CCC--------------CCHHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHhCchHHHHH
Confidence 45 366777777776643 232 7888888888888774 3577777777766655543 23334
Q ss_pred HHHccCCC------CCeehHHHHHHHHH----hCCCHHHHHHHHHhCCCC---Ch-hHHHHHHHHHhcCCChHHHHHHhc
Q 007808 156 KVFGEMDE------RNVVVWTSMINGYI----SCGDIVSARCLFELAPER---DV-ILWNTIVSGYIDVRNMIEARKLFD 221 (589)
Q Consensus 156 ~~~~~~~~------~~~~~~~~l~~~~~----~~g~~~~a~~~~~~~~~~---~~-~~~~~l~~~~~~~g~~~~a~~~~~ 221 (589)
.+|+.... .+...|...+..+. .+|+.+.+.++|++.... +. ..|...... ........+.+++.
T Consensus 69 ~~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~P~~~~~~lw~~Y~~f-E~~~~~~~~~~~~~ 147 (493)
T 2uy1_A 69 EVYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQTPMGSLSELWKDFENF-ELELNKITGKKIVG 147 (493)
T ss_dssp HHHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHTSCCTTHHHHHHHHHHH-HHHHCHHHHHHHHH
T ss_pred HHHHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhChhhhHHHHHHHHHHH-HHHhccccHHHHHH
Confidence 44443221 23345555554432 234455566666555331 11 111111111 11111111222211
Q ss_pred ccCCCChhhHHHHHHHHHhcCCHHHHHHHHhhCCC----CCchhHHHHHHHHHhCC--C-----hHHHHHHHHHHHHcCC
Q 007808 222 QMPKKDVISWNTMLSGYANNGDVEECKRLFEEMPE----RNVFSWNGLIGGYANNG--L-----FFEVLDAFKRMLTEGR 290 (589)
Q Consensus 222 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~----~~~~~~~~l~~~~~~~g--~-----~~~A~~~~~~~~~~~~ 290 (589)
+ . .+.+..|..+++.+.. .+...|...+.--...+ - .+.+..+|++++...
T Consensus 148 ~---------------~--~~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~~- 209 (493)
T 2uy1_A 148 D---------------T--LPIFQSSFQRYQQIQPLIRGWSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDSF- 209 (493)
T ss_dssp H---------------H--HHHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT-
T ss_pred H---------------H--hHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHcC-
Confidence 1 0 0122223333322221 13345555544322221 1 345677899888864
Q ss_pred CCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHH-HHHHhhCC--C-------C-
Q 007808 291 VFPNDATIVTVLSACARLGALDFSKWVHVYAEYNGYQGNVCVGNALIDMYAKCGIIENA-VDVFNSMD--T-------K- 359 (589)
Q Consensus 291 ~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A-~~~~~~~~--~-------~- 359 (589)
+.+...|...+.-+.+.|+.+.|..+++++... |.+...+.. |+...+.++. ..+.+... . +
T Consensus 210 -p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~--P~~~~l~~~----y~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~ 282 (493)
T 2uy1_A 210 -YYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM--SDGMFLSLY----YGLVMDEEAVYGDLKRKYSMGEAESAEKVFS 282 (493)
T ss_dssp -TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSSHHHHH----HHHHTTCTHHHHHHHHHTC----------CH
T ss_pred -CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCcHHHHHH----HHhhcchhHHHHHHHHHHHhhccchhhhhcc
Confidence 445667777777788889999999999999988 444443332 2221111111 12222211 0 0
Q ss_pred --CcchHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhc-cCcHHHHHHHHHHhHHhcCCCCChHHHH
Q 007808 360 --DLITWNTIISGLAMHGRGAGALSLFHEMKNAGEMPDGITFIGILCACTH-MGLVEEGLSYFQSMAMDYSIVPQIEHYG 436 (589)
Q Consensus 360 --~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~-~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 436 (589)
....|...+..+.+.++.+.|..+|++. .. ...+...|...+..-.. .++.+.|..+|+...+.++ .++..+.
T Consensus 283 ~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~-~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~--~~~~~~~ 358 (493)
T 2uy1_A 283 KELDLLRINHLNYVLKKRGLELFRKLFIEL-GN-EGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHP--DSTLLKE 358 (493)
T ss_dssp HHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TT-SCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCT--TCHHHHH
T ss_pred cccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hC-CCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCC--CCHHHHH
Confidence 1235666666666677888888888888 32 11233334322222122 2368888888888877543 2344566
Q ss_pred HHHHHHHhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHc
Q 007808 437 CMVDLLARAGRLAEAVDFVKRMPIEADAVIWANLLGSCRVYKNVELAELALERLTE 492 (589)
Q Consensus 437 ~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 492 (589)
..++...+.|+.+.|..+|+++. .....|...+..-...|+.+.+..+++++.+
T Consensus 359 ~yid~e~~~~~~~~aR~l~er~~--k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 359 EFFLFLLRIGDEENARALFKRLE--KTSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHSC--CBHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHH--HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 67777788888888888888883 2466677777666677888888888888775
No 144
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.82 E-value=1.1e-08 Score=81.00 Aligned_cols=91 Identities=19% Similarity=0.022 Sum_probs=81.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhC-CCCC-CHHHHHHHHHHHhcCCCHHHHHHHHHHHHccCCCCCcchHHHHHHHhhcC
Q 007808 435 YGCMVDLLARAGRLAEAVDFVKRM-PIEA-DAVIWANLLGSCRVYKNVELAELALERLTELEPKNPANFVMLSNIYGDLG 512 (589)
Q Consensus 435 ~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 512 (589)
+..+...+.+.|++++|+..++++ ...| +...|..+..++...|++++|+..|+++++++|+++.++..++.+|.+.|
T Consensus 20 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~g 99 (121)
T 1hxi_A 20 PMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEH 99 (121)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Confidence 455677888999999999999988 3445 67788888899999999999999999999999999999999999999999
Q ss_pred ChHHHHHHHHHhh
Q 007808 513 RWKDVARIKVAMR 525 (589)
Q Consensus 513 ~~~~A~~~~~~~~ 525 (589)
++++|+..+++..
T Consensus 100 ~~~~A~~~~~~al 112 (121)
T 1hxi_A 100 NANAALASLRAWL 112 (121)
T ss_dssp HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHH
Confidence 9999999999985
No 145
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=98.82 E-value=2.8e-09 Score=86.68 Aligned_cols=108 Identities=15% Similarity=0.068 Sum_probs=82.9
Q ss_pred HHHHHHHHhcCCHHHHHHHHhhC-CCCCC-------------HHHHHHHHHHHhcCCCHHHHHHHHHHHHcc-------C
Q 007808 436 GCMVDLLARAGRLAEAVDFVKRM-PIEAD-------------AVIWANLLGSCRVYKNVELAELALERLTEL-------E 494 (589)
Q Consensus 436 ~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-------------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-------~ 494 (589)
......+.+.|++++|++.|++. .+.|+ ...|..+..++.+.|++++|+..+++++++ +
T Consensus 15 ~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~ 94 (159)
T 2hr2_A 15 LSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELN 94 (159)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTT
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCC
Confidence 33445555555666665555554 22222 237888889999999999999999999999 9
Q ss_pred CCCCcch----HHHHHHHhhcCChHHHHHHHHHhhhCCCccCCccceeeeCCeeeeeccccCCCchHHHHHHHHHHH
Q 007808 495 PKNPANF----VMLSNIYGDLGRWKDVARIKVAMRDTGFKKLPGCSSIEVNEVVMLGCLSRELDRKSIVRAEANMIK 567 (589)
Q Consensus 495 p~~~~~~----~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~~~ 567 (589)
|++..+| +..+.++...|++++|+..|++.. +++|+++++...+..+-.
T Consensus 95 pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAl------------------------el~p~d~~~~~~~~~~~~ 147 (159)
T 2hr2_A 95 QDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVV------------------------EMIEERKGETPGKERMME 147 (159)
T ss_dssp STHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH------------------------HHHHHCCSCCTTHHHHHH
T ss_pred CchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHH------------------------hcCCCcHHHHHHHHHHHH
Confidence 9999999 999999999999999999999986 677777777666665543
No 146
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.80 E-value=8.4e-09 Score=95.60 Aligned_cols=188 Identities=8% Similarity=-0.081 Sum_probs=117.9
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHhhCC---CCCcchHHHHHHHHHhCCChHHHHHHHHHHHHCCCCC-CHhHHHHHHHH
Q 007808 330 VCVGNALIDMYAKCGIIENAVDVFNSMD---TKDLITWNTIISGLAMHGRGAGALSLFHEMKNAGEMP-DGITFIGILCA 405 (589)
Q Consensus 330 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p-~~~~~~~l~~~ 405 (589)
...+..+...+...|++++|...|++.. ..+...|..+..+|.+.|++++|+..+++..+. .| +...+..+..+
T Consensus 4 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~ 81 (281)
T 2c2l_A 4 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALEL--DGQSVKAHFFLGQC 81 (281)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--CTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCCHHHHHHHHHH
Confidence 3445556666666666666666666554 225566677777777778888888888777764 34 45667777777
Q ss_pred HhccCcHHHHHHHHHHhHHhcCCCC---ChHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHhcCCCHHH
Q 007808 406 CTHMGLVEEGLSYFQSMAMDYSIVP---QIEHYGCMVDLLARAGRLAEAVDFVKRMPIEADAVIWANLLGSCRVYKNVEL 482 (589)
Q Consensus 406 ~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 482 (589)
+...|++++|...|+++.....-.+ ....+..+ ...+...+.. .......++......+.. + ..|++++
T Consensus 82 ~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~--~~~~~~~~~~----~~~~~~~~~~~i~~~l~~-l-~~~~~~~ 153 (281)
T 2c2l_A 82 QLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSAL--RIAKKKRWNS----IEERRIHQESELHSYLTR-L-IAAERER 153 (281)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCCCCSHHHHHH--HHHHHHHHHH----HHHTCCCCCCHHHHHHHH-H-HHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCccchhhHHHHHHHHH--HHHHHHHHHH----HHHHHHhhhHHHHHHHHH-H-HHHHHHH
Confidence 8888888888888877654211111 11112111 1112211211 122222333333333322 2 2689999
Q ss_pred HHHHHHHHHccCCCCCcchHHHHHHHhhc-CChHHHHHHHHHhhhC
Q 007808 483 AELALERLTELEPKNPANFVMLSNIYGDL-GRWKDVARIKVAMRDT 527 (589)
Q Consensus 483 A~~~~~~~~~~~p~~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~ 527 (589)
|.+.++++++.+|++......+...+.+. +.+++|.++|.++.+.
T Consensus 154 A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~~ 199 (281)
T 2c2l_A 154 ELEECQRNHEGHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDEK 199 (281)
T ss_dssp HHTTTSGGGTTTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSCT
T ss_pred HHHHHHhhhccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 99999999999998888888888888876 7799999999988653
No 147
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.80 E-value=2.9e-08 Score=92.81 Aligned_cols=163 Identities=6% Similarity=-0.097 Sum_probs=123.0
Q ss_pred HHHHHHhccCcHHHHHHHHHHhHHhcCCCCChH----HHHHHHHHHHhcCCHHHHHHHHhhC----CCCCC----HHHHH
Q 007808 401 GILCACTHMGLVEEGLSYFQSMAMDYSIVPQIE----HYGCMVDLLARAGRLAEAVDFVKRM----PIEAD----AVIWA 468 (589)
Q Consensus 401 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~----~~~~l~~~~~~~g~~~~A~~~~~~~----~~~p~----~~~~~ 468 (589)
..+..+...|++++|..++++........|+.. .+..+...+...|++++|+..++++ ...++ ..+++
T Consensus 80 ~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~ 159 (293)
T 3u3w_A 80 DQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIEN 159 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHH
Confidence 346677889999999999999876433344422 3445777888889999999999886 11223 34688
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHcc-------CCCCCcchHHHHHHHhhcCChHHHHHHHHHhhhCCCccCCccceeeeC
Q 007808 469 NLLGSCRVYKNVELAELALERLTEL-------EPKNPANFVMLSNIYGDLGRWKDVARIKVAMRDTGFKKLPGCSSIEVN 541 (589)
Q Consensus 469 ~l~~~~~~~g~~~~A~~~~~~~~~~-------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 541 (589)
.+...|...|++++|+..|+++++. .|....++..++.+|.+.|++++|++.+++..+....
T Consensus 160 ~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~----------- 228 (293)
T 3u3w_A 160 AIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCR----------- 228 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH-----------
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH-----------
Confidence 8889999999999999999999952 2223458899999999999999999999988521100
Q ss_pred CeeeeeccccCCCchHHHHHHHHHHHHcccC-CCCcchHhh
Q 007808 542 EVVMLGCLSRELDRKSIVRAEANMIKLLPQN-NHPLTFIVV 581 (589)
Q Consensus 542 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~-~~~~~~~~~ 581 (589)
....+.-+.++..+|.+|..+|+. ++|+.+...
T Consensus 229 -------~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~ 262 (293)
T 3u3w_A 229 -------INSMALIGQLYYQRGECLRKLEYEEAEIEDAYKK 262 (293)
T ss_dssp -------TTBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred -------cCcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHH
Confidence 023345588999999999999975 778776654
No 148
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.80 E-value=6.1e-09 Score=82.56 Aligned_cols=93 Identities=15% Similarity=-0.038 Sum_probs=85.4
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHccCCCCCcchHHHHHHHhhcCChHHHHHHHHHhhhCCCccCCccceeeeCCeeee
Q 007808 467 WANLLGSCRVYKNVELAELALERLTELEPKNPANFVMLSNIYGDLGRWKDVARIKVAMRDTGFKKLPGCSSIEVNEVVML 546 (589)
Q Consensus 467 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 546 (589)
+..+...+.+.|++++|+..++++++.+|+++.++..++.++.+.|++++|+..+++..
T Consensus 20 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al--------------------- 78 (121)
T 1hxi_A 20 PMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHAR--------------------- 78 (121)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH---------------------
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH---------------------
Confidence 44566778899999999999999999999999999999999999999999999999986
Q ss_pred eccccCCCchHHHHHHHHHHHHcccCCCCcchHhhhh
Q 007808 547 GCLSRELDRKSIVRAEANMIKLLPQNNHPLTFIVVIF 583 (589)
Q Consensus 547 ~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 583 (589)
+++|+++.++..||.+|...|+.++|+..+....
T Consensus 79 ---~l~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al 112 (121)
T 1hxi_A 79 ---MLDPKDIAVHAALAVSHTNEHNANAALASLRAWL 112 (121)
T ss_dssp ---HHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ---HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 8999999999999999999999999988776543
No 149
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.80 E-value=4.1e-08 Score=79.14 Aligned_cols=117 Identities=7% Similarity=-0.039 Sum_probs=89.9
Q ss_pred CHhHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHhhC-CCCC-CHHHHHHHHH
Q 007808 395 DGITFIGILCACTHMGLVEEGLSYFQSMAMDYSIVPQIEHYGCMVDLLARAGRLAEAVDFVKRM-PIEA-DAVIWANLLG 472 (589)
Q Consensus 395 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~ 472 (589)
+...+..+...+...|++++|...++++... .+.+...+..+..+|...|++++|++.++++ ...| +...+..+..
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~ 92 (133)
T 2lni_A 15 LALMVKNKGNECFQKGDYPQAMKHYTEAIKR--NPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAA 92 (133)
T ss_dssp HHHHHHHHHHHHHHTTCSHHHHHHHHHHHTT--CTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHH
Confidence 3445666777777777777777777777532 2234666777777788888888888887776 2233 5677888888
Q ss_pred HHhcCCCHHHHHHHHHHHHccCCCCCcchHHHHHHHhhcCC
Q 007808 473 SCRVYKNVELAELALERLTELEPKNPANFVMLSNIYGDLGR 513 (589)
Q Consensus 473 ~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 513 (589)
++...|++++|.+.++++++++|.+...+..++.++.+.|+
T Consensus 93 ~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 133 (133)
T 2lni_A 93 ALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQYN 133 (133)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHTC
T ss_pred HHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcC
Confidence 89999999999999999999999989999999999887764
No 150
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.79 E-value=8.1e-09 Score=82.67 Aligned_cols=95 Identities=7% Similarity=-0.084 Sum_probs=87.5
Q ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHccCCCCCcchHHHHHHHhhcCChHHHHHHHHHhhhCCCccCCccceeeeCCe
Q 007808 464 AVIWANLLGSCRVYKNVELAELALERLTELEPKNPANFVMLSNIYGDLGRWKDVARIKVAMRDTGFKKLPGCSSIEVNEV 543 (589)
Q Consensus 464 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 543 (589)
...+..+...+.+.|++++|+..|+++++++|+++.++..++.+|.+.|++++|+..+++..
T Consensus 4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al------------------ 65 (126)
T 3upv_A 4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAI------------------ 65 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH------------------
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHH------------------
Confidence 45677778889999999999999999999999999999999999999999999999999986
Q ss_pred eeeeccccCCCchHHHHHHHHHHHHcccCCCCcchHhhh
Q 007808 544 VMLGCLSRELDRKSIVRAEANMIKLLPQNNHPLTFIVVI 582 (589)
Q Consensus 544 ~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 582 (589)
+++|+++.++..+|.+|..+|+.++|+..+...
T Consensus 66 ------~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~a 98 (126)
T 3upv_A 66 ------EKDPNFVRAYIRKATAQIAVKEYASALETLDAA 98 (126)
T ss_dssp ------HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred ------HhCCCcHHHHHHHHHHHHHHhCHHHHHHHHHHH
Confidence 789999999999999999999999888776643
No 151
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.79 E-value=7.8e-09 Score=84.80 Aligned_cols=105 Identities=10% Similarity=-0.032 Sum_probs=90.1
Q ss_pred HHhhC-CCCCC-HHHHHHHHHHHhcCCCHHHHHHHHHHHHccCCCCCcchHHHHHHHhhcCChHHHHHHHHHhhhCCCcc
Q 007808 454 FVKRM-PIEAD-AVIWANLLGSCRVYKNVELAELALERLTELEPKNPANFVMLSNIYGDLGRWKDVARIKVAMRDTGFKK 531 (589)
Q Consensus 454 ~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 531 (589)
.|+++ ...|+ ...+..+...+.+.|++++|+..|+++++.+|+++..+..++.+|.+.|++++|+..++++.
T Consensus 6 ~l~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al------ 79 (142)
T 2xcb_A 6 TLAMLRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGA------ 79 (142)
T ss_dssp ---CCTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH------
T ss_pred hHHHHHcCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHH------
Confidence 34444 34553 45566677888999999999999999999999999999999999999999999999999986
Q ss_pred CCccceeeeCCeeeeeccccCCCchHHHHHHHHHHHHcccCCCCcchHhhh
Q 007808 532 LPGCSSIEVNEVVMLGCLSRELDRKSIVRAEANMIKLLPQNNHPLTFIVVI 582 (589)
Q Consensus 532 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 582 (589)
+++|+++.++..+|.+|..+|+.++|+..+...
T Consensus 80 ------------------~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a 112 (142)
T 2xcb_A 80 ------------------LMDINEPRFPFHAAECHLQLGDLDGAESGFYSA 112 (142)
T ss_dssp ------------------HHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred ------------------hcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 789999999999999999999999988877643
No 152
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.79 E-value=5.5e-08 Score=77.27 Aligned_cols=115 Identities=18% Similarity=0.197 Sum_probs=92.2
Q ss_pred HhHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHhhC-C-CCCCHHHHHHHHHH
Q 007808 396 GITFIGILCACTHMGLVEEGLSYFQSMAMDYSIVPQIEHYGCMVDLLARAGRLAEAVDFVKRM-P-IEADAVIWANLLGS 473 (589)
Q Consensus 396 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~-~~p~~~~~~~l~~~ 473 (589)
...+..+...+...|++++|.+.++++... .+.+...+..++..+.+.|++++|+..++++ . .+.+...+..+...
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~ 86 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALEL--DPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNA 86 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHH
Confidence 456677777788888888888888887653 2345667778888888888888888888877 2 23466778888889
Q ss_pred HhcCCCHHHHHHHHHHHHccCCCCCcchHHHHHHHhhcC
Q 007808 474 CRVYKNVELAELALERLTELEPKNPANFVMLSNIYGDLG 512 (589)
Q Consensus 474 ~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 512 (589)
+...|++++|...++++++..|+++..+..++.++.+.|
T Consensus 87 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 125 (125)
T 1na0_A 87 YYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQG 125 (125)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHC
T ss_pred HHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcc
Confidence 999999999999999999999999999999888887654
No 153
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.78 E-value=4.9e-08 Score=78.34 Aligned_cols=119 Identities=12% Similarity=0.001 Sum_probs=96.2
Q ss_pred CHhHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHhhC-CCCC-CHHHHHHHHH
Q 007808 395 DGITFIGILCACTHMGLVEEGLSYFQSMAMDYSIVPQIEHYGCMVDLLARAGRLAEAVDFVKRM-PIEA-DAVIWANLLG 472 (589)
Q Consensus 395 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~ 472 (589)
+...+..+...+...|++++|...++++... .+.+...+..++..+...|++++|++.+++. ...| +...+..+..
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 88 (131)
T 2vyi_A 11 EAERLKTEGNEQMKVENFEAAVHFYGKAIEL--NPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGL 88 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHccCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHH
Confidence 3445667777788888888888888887653 2335677778888888889999998888877 2333 5677888888
Q ss_pred HHhcCCCHHHHHHHHHHHHccCCCCCcchHHHHHHHhhcCChH
Q 007808 473 SCRVYKNVELAELALERLTELEPKNPANFVMLSNIYGDLGRWK 515 (589)
Q Consensus 473 ~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 515 (589)
.+...|++++|...+++++++.|+++..+..++.++.+.|+++
T Consensus 89 ~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~ 131 (131)
T 2vyi_A 89 ALSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLREAP 131 (131)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTTCC
T ss_pred HHHHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhcCC
Confidence 9999999999999999999999999999999999999888763
No 154
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.77 E-value=3.8e-08 Score=79.02 Aligned_cols=110 Identities=12% Similarity=0.073 Sum_probs=87.6
Q ss_pred HHHHHHHhcCCHHHHHHHHhhC-CCCCC-H---HHHHHHHHHHhcCCCHHHHHHHHHHHHccCCCC---CcchHHHHHHH
Q 007808 437 CMVDLLARAGRLAEAVDFVKRM-PIEAD-A---VIWANLLGSCRVYKNVELAELALERLTELEPKN---PANFVMLSNIY 508 (589)
Q Consensus 437 ~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~---~~~~~~l~~~~ 508 (589)
.+...+...|++++|++.|+++ ...|+ . ..+..+..++...|++++|...++++++..|++ +.++..++.++
T Consensus 7 ~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~~ 86 (129)
T 2xev_A 7 NVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQ 86 (129)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHH
Confidence 4566777888888888888776 22333 2 466677788889999999999999999999998 66789999999
Q ss_pred hhcCChHHHHHHHHHhhhCCCccCCccceeeeCCeeeeeccccCCCchHHHHHHHHHHHHcc
Q 007808 509 GDLGRWKDVARIKVAMRDTGFKKLPGCSSIEVNEVVMLGCLSRELDRKSIVRAEANMIKLLP 570 (589)
Q Consensus 509 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~ 570 (589)
...|++++|+..++++. +..|+++.+......+..-.+
T Consensus 87 ~~~g~~~~A~~~~~~~~------------------------~~~p~~~~~~~a~~~l~~l~~ 124 (129)
T 2xev_A 87 YGEGKNTEAQQTLQQVA------------------------TQYPGSDAARVAQERLQSIRL 124 (129)
T ss_dssp HHTTCHHHHHHHHHHHH------------------------HHSTTSHHHHHHHHHHHHHC-
T ss_pred HHcCCHHHHHHHHHHHH------------------------HHCCCChHHHHHHHHHHHHHh
Confidence 99999999999999886 678888888888777764443
No 155
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.75 E-value=6e-08 Score=92.35 Aligned_cols=128 Identities=10% Similarity=0.057 Sum_probs=97.1
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCC-------------ChHHHHHHHHHHHhcCCHHHHHHHHhhC-CCCC-
Q 007808 398 TFIGILCACTHMGLVEEGLSYFQSMAMDYSIVP-------------QIEHYGCMVDLLARAGRLAEAVDFVKRM-PIEA- 462 (589)
Q Consensus 398 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-------------~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p- 462 (589)
.+..+...+.+.|++++|...|++++......+ ....|..+..+|.+.|++++|+..++++ ...|
T Consensus 149 ~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~ 228 (336)
T 1p5q_A 149 IVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELDSN 228 (336)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 344444445555555555555555443211000 1467888999999999999999999987 3344
Q ss_pred CHHHHHHHHHHHhcCCCHHHHHHHHHHHHccCCCCCcchHHHHHHHhhcCChHHHH-HHHHHhh
Q 007808 463 DAVIWANLLGSCRVYKNVELAELALERLTELEPKNPANFVMLSNIYGDLGRWKDVA-RIKVAMR 525 (589)
Q Consensus 463 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~-~~~~~~~ 525 (589)
+...+..+..+|...|++++|+..|+++++++|+++.++..++.++.+.|++++|. ..+++|.
T Consensus 229 ~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~ 292 (336)
T 1p5q_A 229 NEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAREKKLYANMF 292 (336)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67888889999999999999999999999999999999999999999999999994 4666663
No 156
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.74 E-value=6.1e-09 Score=83.40 Aligned_cols=92 Identities=11% Similarity=0.129 Sum_probs=80.7
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHccCCCCCcchHHHHHHHhhcCChHHHHHHHHHhhhCCCccCCccceeeeCCee
Q 007808 465 VIWANLLGSCRVYKNVELAELALERLTELEPKNPANFVMLSNIYGDLGRWKDVARIKVAMRDTGFKKLPGCSSIEVNEVV 544 (589)
Q Consensus 465 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 544 (589)
..+..++..+.+.|++++|++.|+++++++|+++.+|..++.+|.+.|++++|++.+++..
T Consensus 9 ~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al------------------- 69 (127)
T 4gcn_A 9 IAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAV------------------- 69 (127)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-------------------
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHH-------------------
Confidence 4567788999999999999999999999999999999999999999999999999999985
Q ss_pred eeeccccCCCc-------hHHHHHHHHHHHHcccCCCCcchHh
Q 007808 545 MLGCLSRELDR-------KSIVRAEANMIKLLPQNNHPLTFIV 580 (589)
Q Consensus 545 ~~~~~~~~p~~-------~~~~~~l~~~~~~~~~~~~~~~~~~ 580 (589)
+++|++ +.++..+|.+|..+|+..+|+.+..
T Consensus 70 -----~~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~ 107 (127)
T 4gcn_A 70 -----EVGRETRADYKLIAKAMSRAGNAFQKQNDLSLAVQWFH 107 (127)
T ss_dssp -----HHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred -----HhCcccchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 333333 4588889999999999988887654
No 157
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.74 E-value=9.9e-09 Score=80.89 Aligned_cols=105 Identities=17% Similarity=0.165 Sum_probs=82.9
Q ss_pred hcCCHHHHHHHHhhC-CC---CC-CHHHHHHHHHHHhcCCCHHHHHHHHHHHHccCCCCCcchHHHHHHHhhcCChHHHH
Q 007808 444 RAGRLAEAVDFVKRM-PI---EA-DAVIWANLLGSCRVYKNVELAELALERLTELEPKNPANFVMLSNIYGDLGRWKDVA 518 (589)
Q Consensus 444 ~~g~~~~A~~~~~~~-~~---~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~ 518 (589)
..|++++|+..|+++ .. .| +...+..+..++...|++++|+..++++++++|+++.++..++.++.+.|++++|+
T Consensus 2 ~~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp -----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHH
Confidence 357788888888877 33 24 34567778888999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhCCCccCCccceeeeCCeeeeeccccCCCchHHHHHHHHHHHHcccC
Q 007808 519 RIKVAMRDTGFKKLPGCSSIEVNEVVMLGCLSRELDRKSIVRAEANMIKLLPQN 572 (589)
Q Consensus 519 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~ 572 (589)
..+++.. +.+|+++.+......+..-.+..
T Consensus 82 ~~~~~al------------------------~~~p~~~~~~~~~~ai~~~~~~l 111 (117)
T 3k9i_A 82 ELLLKII------------------------AETSDDETIQSYKQAILFYADKL 111 (117)
T ss_dssp HHHHHHH------------------------HHHCCCHHHHHTHHHHHHHTTCT
T ss_pred HHHHHHH------------------------HhCCCcHHHHHHHHHHHHHHHHH
Confidence 9999885 67888888887776666554444
No 158
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.73 E-value=8.3e-08 Score=89.67 Aligned_cols=165 Identities=6% Similarity=-0.097 Sum_probs=123.4
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCCh----HHHHHHHHHHHhcCCHHHHHHHHhhC-C-----CCCC--HH
Q 007808 398 TFIGILCACTHMGLVEEGLSYFQSMAMDYSIVPQI----EHYGCMVDLLARAGRLAEAVDFVKRM-P-----IEAD--AV 465 (589)
Q Consensus 398 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~~-~-----~~p~--~~ 465 (589)
.+...+..+...|++++|.+.+++........++. ..+..+...+...|++++|+..++++ . ..+. ..
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 156 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY 156 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence 44556677889999999999998886642222211 23445667788899999999998876 2 1222 45
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHc---cCCCCC----cchHHHHHHHhhcCChHHHHHHHHHhhhCCCccCCcccee
Q 007808 466 IWANLLGSCRVYKNVELAELALERLTE---LEPKNP----ANFVMLSNIYGDLGRWKDVARIKVAMRDTGFKKLPGCSSI 538 (589)
Q Consensus 466 ~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~p~~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 538 (589)
+++.+...|...|++++|...++++++ ..|+++ .++..++.+|.+.|++++|+.++++..+.. +..
T Consensus 157 ~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~--~~~----- 229 (293)
T 2qfc_A 157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEIS--CRI----- 229 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--HHT-----
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHH--Hhc-----
Confidence 788888999999999999999999994 455533 588999999999999999999999985321 000
Q ss_pred eeCCeeeeeccccCCCchHHHHHHHHHHHHcccCCCC-cchHh
Q 007808 539 EVNEVVMLGCLSRELDRKSIVRAEANMIKLLPQNNHP-LTFIV 580 (589)
Q Consensus 539 ~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~-~~~~~ 580 (589)
...+..+.++..+|.+|..+|+.++| ..+..
T Consensus 230 -----------~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~ 261 (293)
T 2qfc_A 230 -----------NSMALIGQLYYQRGECLRKLEYEEAEIEDAYK 261 (293)
T ss_dssp -----------TBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred -----------CcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHH
Confidence 12334588899999999999999888 55443
No 159
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.73 E-value=4.3e-08 Score=78.74 Aligned_cols=116 Identities=9% Similarity=0.068 Sum_probs=97.2
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHhhC-CC-CCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHccCCCC-------CcchH
Q 007808 432 IEHYGCMVDLLARAGRLAEAVDFVKRM-PI-EADAVIWANLLGSCRVYKNVELAELALERLTELEPKN-------PANFV 502 (589)
Q Consensus 432 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~-------~~~~~ 502 (589)
...+..++..+...|++++|+..++++ .. +.+...+..+...+...|++++|...++++++..|.+ +.++.
T Consensus 4 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (131)
T 1elr_A 4 ALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYA 83 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHH
Confidence 345677788888888899888888877 22 3366778888888999999999999999999988776 77899
Q ss_pred HHHHHHhhcCChHHHHHHHHHhhhCCCccCCccceeeeCCeeeeeccccCCCchHHHHHHHHHHHHcccC
Q 007808 503 MLSNIYGDLGRWKDVARIKVAMRDTGFKKLPGCSSIEVNEVVMLGCLSRELDRKSIVRAEANMIKLLPQN 572 (589)
Q Consensus 503 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~ 572 (589)
.++.++...|++++|.+.++++. +..| ++.....++.++..+++.
T Consensus 84 ~la~~~~~~~~~~~A~~~~~~~~------------------------~~~~-~~~~~~~l~~~~~~~~~~ 128 (131)
T 1elr_A 84 RIGNSYFKEEKYKDAIHFYNKSL------------------------AEHR-TPDVLKKCQQAEKILKEQ 128 (131)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHH------------------------HHCC-CHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHhccHHHHHHHHHHHH------------------------HhCC-CHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999986 5667 588899999998877665
No 160
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.72 E-value=4.3e-08 Score=90.81 Aligned_cols=176 Identities=8% Similarity=-0.047 Sum_probs=100.1
Q ss_pred cchHHHHHHHHHhCCChHHHHHHHHHHHHCCCCC-CHhHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHH
Q 007808 361 LITWNTIISGLAMHGRGAGALSLFHEMKNAGEMP-DGITFIGILCACTHMGLVEEGLSYFQSMAMDYSIVPQIEHYGCMV 439 (589)
Q Consensus 361 ~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~ 439 (589)
...+..+...+...|++++|+..|++..+. .| +...+..+..++...|++++|...++++++ ..+.+...+..++
T Consensus 4 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~lg 79 (281)
T 2c2l_A 4 AQELKEQGNRLFVGRKYPEAAACYGRAITR--NPLVAVYYTNRALCYLKMQQPEQALADCRRALE--LDGQSVKAHFFLG 79 (281)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTT--SCTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH--hCCCCHHHHHHHH
Confidence 345566666677777777777777777663 34 555666666677777777777777776653 1222355666667
Q ss_pred HHHHhcCCHHHHHHHHhhC-CCCCCH-HHHHHHHHHHhcCCCHHHHHHHHHHHHccCCCCCcchHHHHHHHhhcCChHHH
Q 007808 440 DLLARAGRLAEAVDFVKRM-PIEADA-VIWANLLGSCRVYKNVELAELALERLTELEPKNPANFVMLSNIYGDLGRWKDV 517 (589)
Q Consensus 440 ~~~~~~g~~~~A~~~~~~~-~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A 517 (589)
.+|...|++++|+..|+++ ...|+. ..+...+.... ...++...........|.++.....++..+ .|++++|
T Consensus 80 ~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~i~~~l~~l~--~~~~~~A 154 (281)
T 2c2l_A 80 QCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSAL---RIAKKKRWNSIEERRIHQESELHSYLTRLI--AAERERE 154 (281)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCCCCSHHHHHH---HHHHHHHHHHHHHTCCCCCCHHHHHHHHHH--HHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCccchhhHHHHHHHHH---HHHHHHHHHHHHHHHHhhhHHHHHHHHHHH--HHHHHHH
Confidence 7777777777777776665 222211 00111111111 111122222222334555555555555543 5666666
Q ss_pred HHHHHHhhhCCCccCCccceeeeCCeeeeeccccCCCchHHHHHHHHHHHHc
Q 007808 518 ARIKVAMRDTGFKKLPGCSSIEVNEVVMLGCLSRELDRKSIVRAEANMIKLL 569 (589)
Q Consensus 518 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 569 (589)
++.+++. ++++|++......++.++.+.
T Consensus 155 ~~~~~~a------------------------l~~~p~~~~~~~~l~~~~~~~ 182 (281)
T 2c2l_A 155 LEECQRN------------------------HEGHEDDGHIRAQQACIEAKH 182 (281)
T ss_dssp HTTTSGG------------------------GTTTSCHHHHTHHHHHHHHHH
T ss_pred HHHHHhh------------------------hccccchhhhhhHHHHHHHHH
Confidence 6665554 378898888888887777665
No 161
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.72 E-value=2.8e-08 Score=99.06 Aligned_cols=129 Identities=11% Similarity=0.056 Sum_probs=72.5
Q ss_pred HhHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC-------------hHHHHHHHHHHHhcCCHHHHHHHHhhC-CCC
Q 007808 396 GITFIGILCACTHMGLVEEGLSYFQSMAMDYSIVPQ-------------IEHYGCMVDLLARAGRLAEAVDFVKRM-PIE 461 (589)
Q Consensus 396 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-------------~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~ 461 (589)
...+..+...+.+.|++++|...|++++......++ ...|..+..+|.+.|++++|+..++++ .+.
T Consensus 268 a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~ 347 (457)
T 1kt0_A 268 AAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLD 347 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC
Confidence 345666667777777777777777777653221111 345555566666666666666666555 222
Q ss_pred C-CHHHHHHHHHHHhcCCCHHHHHHHHHHHHccCCCCCcchHHHHHHHhhcCChHHHHH-HHHHh
Q 007808 462 A-DAVIWANLLGSCRVYKNVELAELALERLTELEPKNPANFVMLSNIYGDLGRWKDVAR-IKVAM 524 (589)
Q Consensus 462 p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~-~~~~~ 524 (589)
| +...|..+..+|...|++++|+..|+++++++|++..++..++.++.+.|++++|.+ .+++|
T Consensus 348 p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~ 412 (457)
T 1kt0_A 348 SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKKAKEHNERDRRIYANM 412 (457)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2 445555555666666666666666666666666666666666666666666655543 33444
No 162
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.71 E-value=1.9e-08 Score=84.82 Aligned_cols=96 Identities=8% Similarity=-0.083 Sum_probs=88.2
Q ss_pred CHHHHHHHHHHHhcCCCHHHHHHHHHHHHccCCCCCcchHHHHHHHhhcCChHHHHHHHHHhhhCCCccCCccceeeeCC
Q 007808 463 DAVIWANLLGSCRVYKNVELAELALERLTELEPKNPANFVMLSNIYGDLGRWKDVARIKVAMRDTGFKKLPGCSSIEVNE 542 (589)
Q Consensus 463 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 542 (589)
+...+..+...+...|++++|+..|+++++++|+++.++..++.+|.+.|++++|+..+++..
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al----------------- 72 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELAT----------------- 72 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-----------------
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHH-----------------
Confidence 456677788899999999999999999999999999999999999999999999999999986
Q ss_pred eeeeeccccCCCchHHHHHHHHHHHHcccCCCCcchHhhh
Q 007808 543 VVMLGCLSRELDRKSIVRAEANMIKLLPQNNHPLTFIVVI 582 (589)
Q Consensus 543 ~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 582 (589)
+++|+++.++..+|.+|..+|+.++|+..+...
T Consensus 73 -------~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a 105 (164)
T 3sz7_A 73 -------VVDPKYSKAWSRLGLARFDMADYKGAKEAYEKG 105 (164)
T ss_dssp -------HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred -------HhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 789999999999999999999998888876643
No 163
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.69 E-value=3.6e-08 Score=80.09 Aligned_cols=97 Identities=6% Similarity=-0.133 Sum_probs=89.8
Q ss_pred CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHccCCCCCcchHHHHHHHhhcCChHHHHHHHHHhhhCCCccCCccceeeeC
Q 007808 462 ADAVIWANLLGSCRVYKNVELAELALERLTELEPKNPANFVMLSNIYGDLGRWKDVARIKVAMRDTGFKKLPGCSSIEVN 541 (589)
Q Consensus 462 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 541 (589)
.+...+..+...+...|++++|+..|+++++.+|+++.++..++.++...|++++|+..+++..
T Consensus 7 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al---------------- 70 (137)
T 3q49_B 7 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRAL---------------- 70 (137)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH----------------
T ss_pred ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHH----------------
Confidence 4677888889999999999999999999999999999999999999999999999999999986
Q ss_pred CeeeeeccccCCCchHHHHHHHHHHHHcccCCCCcchHhhh
Q 007808 542 EVVMLGCLSRELDRKSIVRAEANMIKLLPQNNHPLTFIVVI 582 (589)
Q Consensus 542 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 582 (589)
+++|+++.++..+|.+|..+|+.++|+......
T Consensus 71 --------~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a 103 (137)
T 3q49_B 71 --------ELDGQSVKAHFFLGQCQLEMESYDEAIANLQRA 103 (137)
T ss_dssp --------HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred --------HhCchhHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 788999999999999999999998888776644
No 164
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.68 E-value=1.1e-06 Score=82.19 Aligned_cols=175 Identities=11% Similarity=0.036 Sum_probs=141.3
Q ss_pred HHHhCCChHHHHHHHHHHHHCCCCCC-HhHHHHHHHHHhccC-cHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhc-C
Q 007808 370 GLAMHGRGAGALSLFHEMKNAGEMPD-GITFIGILCACTHMG-LVEEGLSYFQSMAMDYSIVPQIEHYGCMVDLLARA-G 446 (589)
Q Consensus 370 ~~~~~~~~~~A~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g 446 (589)
.....+..++|++++++++.. .|+ ...|+.-...+...| .+++++++++.++. ..+.+..+|+.-..++.+. +
T Consensus 63 ~~~~~e~se~AL~lt~~~L~~--nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~--~nPKny~aW~hR~wlL~~l~~ 138 (349)
T 3q7a_A 63 IAAKEEKSERALELTEIIVRM--NPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAV--QNLKSYQVWHHRLLLLDRISP 138 (349)
T ss_dssp HHHTTCCSHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH--TTCCCHHHHHHHHHHHHHHCC
T ss_pred HHHhCCCCHHHHHHHHHHHHh--CchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHHhcC
Confidence 344556668899999999984 564 455666666666777 59999999999986 3345677788777777776 6
Q ss_pred -CHHHHHHHHhhC-CCCC-CHHHHHHHHHHHhcCCCHH--------HHHHHHHHHHccCCCCCcchHHHHHHHhhcCC--
Q 007808 447 -RLAEAVDFVKRM-PIEA-DAVIWANLLGSCRVYKNVE--------LAELALERLTELEPKNPANFVMLSNIYGDLGR-- 513 (589)
Q Consensus 447 -~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~--------~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~-- 513 (589)
++++++++++++ ...| +...|+.-...+.+.|.++ ++++.++++++.+|.|..+|...+.++.+.|+
T Consensus 139 ~~~~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~N~SAW~~R~~lL~~l~~~~ 218 (349)
T 3q7a_A 139 QDPVSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGRNNSAWGWRWYLRVSRPGAE 218 (349)
T ss_dssp SCCHHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTTSTTCC
T ss_pred CChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccccc
Confidence 889999999988 4445 7788887776666666555 99999999999999999999999999999987
Q ss_pred -----hHHHHHHHHHhhhCCCccCCccceeeeCCeeeeeccccCCCchHHHHHHHHHHHHcccC
Q 007808 514 -----WKDVARIKVAMRDTGFKKLPGCSSIEVNEVVMLGCLSRELDRKSIVRAEANMIKLLPQN 572 (589)
Q Consensus 514 -----~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~ 572 (589)
++++++.++++. .++|+|.+++..+.+++...|+.
T Consensus 219 ~~~~~~~eELe~~~~aI------------------------~~~P~n~SaW~Ylr~Ll~~~~~~ 258 (349)
T 3q7a_A 219 TSSRSLQDELIYILKSI------------------------HLIPHNVSAWNYLRGFLKHFSLP 258 (349)
T ss_dssp CCHHHHHHHHHHHHHHH------------------------HHCTTCHHHHHHHHHHHHHTTCC
T ss_pred cchHHHHHHHHHHHHHH------------------------HhCCCCHHHHHHHHHHHHhcCCC
Confidence 688888888875 79999999999999999988876
No 165
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=98.68 E-value=5.8e-08 Score=93.53 Aligned_cols=89 Identities=9% Similarity=-0.008 Sum_probs=79.6
Q ss_pred CHHHHHHHHHHHhcCCCHHHHHHHHHHHHccCCCCCcchHHHHHHHhhcCChHHHHHHHHHhhhCCCccCCccceeeeCC
Q 007808 463 DAVIWANLLGSCRVYKNVELAELALERLTELEPKNPANFVMLSNIYGDLGRWKDVARIKVAMRDTGFKKLPGCSSIEVNE 542 (589)
Q Consensus 463 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 542 (589)
+...|..+..+|.+.|++++|++.++++++++|+++.++..++.+|...|++++|++.++++.
T Consensus 272 ~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al----------------- 334 (370)
T 1ihg_A 272 ALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQ----------------- 334 (370)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-----------------
T ss_pred HHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHH-----------------
Confidence 356777888889999999999999999999999999999999999999999999999999886
Q ss_pred eeeeeccccCCCchHHHHHHHHHHHHcccCCCC
Q 007808 543 VVMLGCLSRELDRKSIVRAEANMIKLLPQNNHP 575 (589)
Q Consensus 543 ~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~ 575 (589)
+++|+++.++..++.++..+++..++
T Consensus 335 -------~l~P~~~~~~~~l~~~~~~~~~~~~a 360 (370)
T 1ihg_A 335 -------EIAPEDKAIQAELLKVKQKIKAQKDK 360 (370)
T ss_dssp -------HHCTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred -------HhCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 78899999999999999988876554
No 166
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.67 E-value=6.1e-08 Score=87.47 Aligned_cols=138 Identities=14% Similarity=-0.055 Sum_probs=104.6
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC--hHHHHHHHHH
Q 007808 364 WNTIISGLAMHGRGAGALSLFHEMKNAGEMPDGITFIGILCACTHMGLVEEGLSYFQSMAMDYSIVPQ--IEHYGCMVDL 441 (589)
Q Consensus 364 ~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~--~~~~~~l~~~ 441 (589)
+..+...+...|++++|.++|+.+... .|+......+...+.+.+++++|+..|+..... . .|. ...+..+..+
T Consensus 105 ~LayA~~L~~~g~y~eA~~~l~~~~~~--~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~-~-d~~~~~~a~~~LG~a 180 (282)
T 4f3v_A 105 TMGFAACEAAQGNYADAMEALEAAPVA--GSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKW-P-DKFLAGAAGVAHGVA 180 (282)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHTSSCCT--TCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGC-S-CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHcCCHHHHHHHHHHhhcc-C-CcccHHHHHHHHHHH
Confidence 344667788899999999999888764 465445556666788999999999999866431 1 111 2367778999
Q ss_pred HHhcCCHHHHHHHHhhCC---CCCC--HHHHHHHHHHHhcCCCHHHHHHHHHHHHccCCCCCcchHHHHH
Q 007808 442 LARAGRLAEAVDFVKRMP---IEAD--AVIWANLLGSCRVYKNVELAELALERLTELEPKNPANFVMLSN 506 (589)
Q Consensus 442 ~~~~g~~~~A~~~~~~~~---~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~ 506 (589)
+.+.|++++|+..|++.. ..|. .........++.+.|+.++|...|+++...+|+ +.+...|.+
T Consensus 181 l~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~-~~~~~aL~~ 249 (282)
T 4f3v_A 181 AANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE-PKVAAALKD 249 (282)
T ss_dssp HHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC-HHHHHHHHC
T ss_pred HHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-HHHHHHHhC
Confidence 999999999999999882 2143 345666778899999999999999999999998 655555543
No 167
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.67 E-value=3.4e-07 Score=93.19 Aligned_cols=172 Identities=12% Similarity=0.028 Sum_probs=141.1
Q ss_pred CChHHHHHHHHHHHHCCCCCC-HhHHHHHHHHHhccCc----------HHHHHHHHHHhHHhcCCCCChHHHHHHHHHHH
Q 007808 375 GRGAGALSLFHEMKNAGEMPD-GITFIGILCACTHMGL----------VEEGLSYFQSMAMDYSIVPQIEHYGCMVDLLA 443 (589)
Q Consensus 375 ~~~~~A~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~g~----------~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 443 (589)
...++|++.++++... .|+ ...|+.-..++...|+ ++++++.++.+.+. .+-+..+|..-..++.
T Consensus 43 ~~~eeal~~~~~~l~~--nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~--~pK~y~aW~hR~w~l~ 118 (567)
T 1dce_A 43 ELDESVLELTSQILGA--NPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRV--NPKSYGTWHHRCWLLS 118 (567)
T ss_dssp CCSHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHH--CchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHH
Confidence 3456789999999984 564 4556665556666666 89999999999863 3456778888888888
Q ss_pred hcC--CHHHHHHHHhhC-CCCC-CHHHHHHHHHHHhcCC-CHHHHHHHHHHHHccCCCCCcchHHHHHHHhhc-------
Q 007808 444 RAG--RLAEAVDFVKRM-PIEA-DAVIWANLLGSCRVYK-NVELAELALERLTELEPKNPANFVMLSNIYGDL------- 511 (589)
Q Consensus 444 ~~g--~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~------- 511 (589)
+.| ++++++++++++ ...| +...|+.-...+.+.| .++++.+.++++++.+|.|..+|...+.++.+.
T Consensus 119 ~l~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~ 198 (567)
T 1dce_A 119 RLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSG 198 (567)
T ss_dssp TCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSS
T ss_pred HcccccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhccccccc
Confidence 889 779999999998 3344 7888998888888888 899999999999999999999999999998874
Q ss_pred -------CChHHHHHHHHHhhhCCCccCCccceeeeCCeeeeeccccCCCchHHHHHHHHHHHHcccCCC
Q 007808 512 -------GRWKDVARIKVAMRDTGFKKLPGCSSIEVNEVVMLGCLSRELDRKSIVRAEANMIKLLPQNNH 574 (589)
Q Consensus 512 -------g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~ 574 (589)
+++++++++++++. .++|++.+++..+++++...++.++
T Consensus 199 ~~~~~~~~~~~eel~~~~~ai------------------------~~~P~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 199 PQGRLPENVLLKELELVQNAF------------------------FTDPNDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp SCCSSCHHHHHHHHHHHHHHH------------------------HHCSSCSHHHHHHHHHHSCCCCCSC
T ss_pred ccccccHHHHHHHHHHHHHHH------------------------hhCCCCccHHHHHHHHHhcCCCccc
Confidence 55788888887775 7899999999999999998887654
No 168
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.66 E-value=6.8e-07 Score=83.51 Aligned_cols=234 Identities=11% Similarity=0.049 Sum_probs=155.7
Q ss_pred cCChHHHHHHHhhCCC---CCcchHHHHHHHHHhCC-ChHHHHHHHHHHHHCCCCC-CHhHHHHHHHHHhcc-C-cHHHH
Q 007808 343 CGIIENAVDVFNSMDT---KDLITWNTIISGLAMHG-RGAGALSLFHEMKNAGEMP-DGITFIGILCACTHM-G-LVEEG 415 (589)
Q Consensus 343 ~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~-~~~~A~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~-g-~~~~A 415 (589)
.+..++|+++++.+.. .+..+|+.-...+...| .+++++++++.+... .| +...|+.-...+... + +++++
T Consensus 67 ~e~se~AL~lt~~~L~~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~--nPKny~aW~hR~wlL~~l~~~~~~~E 144 (349)
T 3q7a_A 67 EEKSERALELTEIIVRMNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQ--NLKSYQVWHHRLLLLDRISPQDPVSE 144 (349)
T ss_dssp TCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHT--TCCCHHHHHHHHHHHHHHCCSCCHHH
T ss_pred CCCCHHHHHHHHHHHHhCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHhcCCChHHH
Confidence 3445567777766652 24456666666666667 588888888888874 44 555666655555555 5 77888
Q ss_pred HHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHH--------HHHHHHhhC-CCCC-CHHHHHHHHHHHhcCCC------
Q 007808 416 LSYFQSMAMDYSIVPQIEHYGCMVDLLARAGRLA--------EAVDFVKRM-PIEA-DAVIWANLLGSCRVYKN------ 479 (589)
Q Consensus 416 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~--------~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~------ 479 (589)
+++++++.. ..+.+...|+.-..++.+.|.++ +++++++++ ...| |...|+.....+.+.+.
T Consensus 145 L~~~~k~L~--~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~N~SAW~~R~~lL~~l~~~~~~~~ 222 (349)
T 3q7a_A 145 IEYIHGSLL--PDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGRNNSAWGWRWYLRVSRPGAETSSR 222 (349)
T ss_dssp HHHHHHHTS--SCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTTSTTCCCCHH
T ss_pred HHHHHHHHH--hCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccccccchH
Confidence 888888874 33445667776555565555555 888888877 3344 77888888888877776
Q ss_pred -HHHHHHHHHHHHccCCCCCcchHHHHHHHhhcCChHHHHHHHHHhhhCCCccCCccceeeeC-Ceeeee---------c
Q 007808 480 -VELAELALERLTELEPKNPANFVMLSNIYGDLGRWKDVARIKVAMRDTGFKKLPGCSSIEVN-EVVMLG---------C 548 (589)
Q Consensus 480 -~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~---------~ 548 (589)
++++++.+++++.++|.|..++..+..++.+.|+-..- ++.. +.|..+. .+... ..+.++ .
T Consensus 223 ~~~eELe~~~~aI~~~P~n~SaW~Ylr~Ll~~~~~~~~~--~~~~-----~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 294 (349)
T 3q7a_A 223 SLQDELIYILKSIHLIPHNVSAWNYLRGFLKHFSLPLVP--ILPA-----ILPYTAS-KLNPDIETVEAFGFPMPSDPLP 294 (349)
T ss_dssp HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCSGG--GHHH-----HGGGTC---------------CCCCC-CCC
T ss_pred HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCCccc--cccc-----ccccccc-cccccchhHHHHHHHHHhcccc
Confidence 78999999999999999999999999999888874110 0000 0000000 00000 000111 0
Q ss_pred cccCCCchHHHHHHHHHHHHcccCCCCcchHhhhhhcccC
Q 007808 549 LSRELDRKSIVRAEANMIKLLPQNNHPLTFIVVIFSTFAS 588 (589)
Q Consensus 549 ~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 588 (589)
...++..+.++..|+.+|.+.|+..+|++....|....|-
T Consensus 295 ~~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~~~dp 334 (349)
T 3q7a_A 295 EDTPLPVPLALEYLADSFIEQNRVDDAAKVFEKLSSEYDQ 334 (349)
T ss_dssp SSCCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCG
T ss_pred cccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhCh
Confidence 1334788999999999999999888899988888766653
No 169
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.64 E-value=1.2e-07 Score=73.56 Aligned_cols=94 Identities=13% Similarity=0.118 Sum_probs=74.8
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHhhC-CC-CCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHccCCC--CCcchHHHHHH
Q 007808 432 IEHYGCMVDLLARAGRLAEAVDFVKRM-PI-EADAVIWANLLGSCRVYKNVELAELALERLTELEPK--NPANFVMLSNI 507 (589)
Q Consensus 432 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~--~~~~~~~l~~~ 507 (589)
...+..++..+.+.|++++|+..++++ .. +.+...+..+...+...|++++|.+.++++++..|. ++..+..++.+
T Consensus 6 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~~ 85 (112)
T 2kck_A 6 PEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKADA 85 (112)
T ss_dssp TTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHHH
Confidence 445566777777788888888877776 22 335667777778888888999999999999988888 88888889999
Q ss_pred Hhhc-CChHHHHHHHHHhh
Q 007808 508 YGDL-GRWKDVARIKVAMR 525 (589)
Q Consensus 508 ~~~~-g~~~~A~~~~~~~~ 525 (589)
+.+. |++++|++.++++.
T Consensus 86 ~~~~~~~~~~A~~~~~~~~ 104 (112)
T 2kck_A 86 LRYIEGKEVEAEIAEARAK 104 (112)
T ss_dssp HTTCSSCSHHHHHHHHHHG
T ss_pred HHHHhCCHHHHHHHHHHHh
Confidence 9999 99999999888885
No 170
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.64 E-value=3.6e-08 Score=76.67 Aligned_cols=100 Identities=11% Similarity=0.016 Sum_probs=89.9
Q ss_pred CHHHHHHHHHHHhcCCCHHHHHHHHHHHHccCCCCCcchHHHHHHHhhcCChHHHHHHHHHhhhCCCccCCccceeeeCC
Q 007808 463 DAVIWANLLGSCRVYKNVELAELALERLTELEPKNPANFVMLSNIYGDLGRWKDVARIKVAMRDTGFKKLPGCSSIEVNE 542 (589)
Q Consensus 463 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 542 (589)
+...+..+...+...|++++|...+++++++.|.++..+..++.++...|++++|++.+++..
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~----------------- 67 (112)
T 2kck_A 5 NPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVI----------------- 67 (112)
T ss_dssp STTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-----------------
T ss_pred cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHH-----------------
Confidence 345566778889999999999999999999999999999999999999999999999999986
Q ss_pred eeeeeccccCCC--chHHHHHHHHHHHHc-ccCCCCcchHhhhhhcc
Q 007808 543 VVMLGCLSRELD--RKSIVRAEANMIKLL-PQNNHPLTFIVVIFSTF 586 (589)
Q Consensus 543 ~~~~~~~~~~p~--~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~ 586 (589)
+.+|+ ++.++..++.+|..+ |+.++|+.++..+....
T Consensus 68 -------~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~ 107 (112)
T 2kck_A 68 -------NVIEDEYNKDVWAAKADALRYIEGKEVEAEIAEARAKLEH 107 (112)
T ss_dssp -------HTSCCTTCHHHHHHHHHHHTTCSSCSHHHHHHHHHHGGGC
T ss_pred -------HhCcccchHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhcc
Confidence 67889 999999999999999 99999998887766543
No 171
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.63 E-value=6.4e-08 Score=96.83 Aligned_cols=119 Identities=13% Similarity=0.035 Sum_probs=89.2
Q ss_pred HHHHHHhcCCHHHHHHHHhhC-CCCC-CHHHHHHHHHHHhcCCCHHHHHHHHHHHHccCCCCCcchHHHHHHHhhcCChH
Q 007808 438 MVDLLARAGRLAEAVDFVKRM-PIEA-DAVIWANLLGSCRVYKNVELAELALERLTELEPKNPANFVMLSNIYGDLGRWK 515 (589)
Q Consensus 438 l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 515 (589)
+...+.+.|++++|++.++++ ...| +...+..+..++.+.|++++|++.++++++++|+++.++..++.+|.+.|+++
T Consensus 12 lg~~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~ 91 (477)
T 1wao_1 12 QANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFR 91 (477)
T ss_dssp SSSSTTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHH
Confidence 344566777777777777776 3344 46777777788888888888888888888888888888888888888888888
Q ss_pred HHHHHHHHhhhCCCccCCccceeeeCCeeeeeccccCCCchHHHHHHHHH--HHHcccCCCCcchHh
Q 007808 516 DVARIKVAMRDTGFKKLPGCSSIEVNEVVMLGCLSRELDRKSIVRAEANM--IKLLPQNNHPLTFIV 580 (589)
Q Consensus 516 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~--~~~~~~~~~~~~~~~ 580 (589)
+|++.++++. +++|+++.++..++.+ +...|+.++|+....
T Consensus 92 eA~~~~~~al------------------------~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 92 AALRDYETVV------------------------KVKPHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHH------------------------HHSTTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHH------------------------HhCCCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 8888888875 6778888888888887 777788888877654
No 172
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.63 E-value=3.8e-07 Score=71.44 Aligned_cols=111 Identities=13% Similarity=0.022 Sum_probs=82.7
Q ss_pred HhHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHhhC-CCCC-CHHHHHHHHHH
Q 007808 396 GITFIGILCACTHMGLVEEGLSYFQSMAMDYSIVPQIEHYGCMVDLLARAGRLAEAVDFVKRM-PIEA-DAVIWANLLGS 473 (589)
Q Consensus 396 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~ 473 (589)
...+..+...+...|++++|...+++.... .+.+...+..++..+...|++++|...++++ ...| +...+..+..+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~ 81 (118)
T 1elw_A 4 VNELKEKGNKALSVGNIDDALQCYSEAIKL--DPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAA 81 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHH
Confidence 345566667777778888888887777653 2235666777778888888888888888776 2333 56677778888
Q ss_pred HhcCCCHHHHHHHHHHHHccCCCCCcchHHHHHHH
Q 007808 474 CRVYKNVELAELALERLTELEPKNPANFVMLSNIY 508 (589)
Q Consensus 474 ~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 508 (589)
+...|++++|.+.++++++.+|+++..+..++.+.
T Consensus 82 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 116 (118)
T 1elw_A 82 LEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNME 116 (118)
T ss_dssp HHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHhh
Confidence 88999999999999999999998887777776654
No 173
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.63 E-value=2.1e-07 Score=79.43 Aligned_cols=127 Identities=9% Similarity=0.055 Sum_probs=101.1
Q ss_pred HhCCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHH-HHhcCCH--
Q 007808 372 AMHGRGAGALSLFHEMKNAGEMPDGITFIGILCACTHMGLVEEGLSYFQSMAMDYSIVPQIEHYGCMVDL-LARAGRL-- 448 (589)
Q Consensus 372 ~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~~-- 448 (589)
...|++++|+..+++..+.. +.+...+..+...|...|++++|...|+++.... +.+...+..+..+ |...|++
T Consensus 21 ~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~la~~l~~~~~~~~~ 97 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR--GENAELYAALATVLYYQASQHMT 97 (177)
T ss_dssp C-----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--CSCHHHHHHHHHHHHHHTTTCCC
T ss_pred hhccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHhcCCcch
Confidence 45688899999999988752 3466788889999999999999999999987642 3456778888888 7889998
Q ss_pred HHHHHHHhhC-CCCC-CHHHHHHHHHHHhcCCCHHHHHHHHHHHHccCCCCCcch
Q 007808 449 AEAVDFVKRM-PIEA-DAVIWANLLGSCRVYKNVELAELALERLTELEPKNPANF 501 (589)
Q Consensus 449 ~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 501 (589)
++|+..++++ ...| +...+..+...+...|++++|...+++++++.|+++...
T Consensus 98 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 152 (177)
T 2e2e_A 98 AQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRINRT 152 (177)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTSCHH
T ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCccHH
Confidence 9999999987 3344 567788888999999999999999999999999976533
No 174
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=98.63 E-value=1.2e-07 Score=70.44 Aligned_cols=83 Identities=17% Similarity=0.164 Sum_probs=74.6
Q ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHccCCCCCcchHHHHHHHhhcCChHHHHHHHHHhhhCCCccCCccceeeeCCe
Q 007808 464 AVIWANLLGSCRVYKNVELAELALERLTELEPKNPANFVMLSNIYGDLGRWKDVARIKVAMRDTGFKKLPGCSSIEVNEV 543 (589)
Q Consensus 464 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 543 (589)
...+..+...+...|++++|+..++++++.+|+++..+..++.++.+.|++++|++.+++..
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~------------------ 70 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKAL------------------ 70 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH------------------
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHH------------------
Confidence 45677777888999999999999999999999999999999999999999999999999886
Q ss_pred eeeeccccCCCchHHHHHHHHHHHHcc
Q 007808 544 VMLGCLSRELDRKSIVRAEANMIKLLP 570 (589)
Q Consensus 544 ~~~~~~~~~p~~~~~~~~l~~~~~~~~ 570 (589)
+++|+++.++..++.++...|
T Consensus 71 ------~~~p~~~~~~~~l~~~~~~~g 91 (91)
T 1na3_A 71 ------ELDPNNAEAKQNLGNAKQKQG 91 (91)
T ss_dssp ------HHCTTCHHHHHHHHHHHHHHC
T ss_pred ------hcCCCCHHHHHHHHHHHHhcC
Confidence 688999999999999987765
No 175
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.62 E-value=6.6e-07 Score=78.15 Aligned_cols=152 Identities=10% Similarity=-0.042 Sum_probs=89.2
Q ss_pred hCCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCcHHHHHHHHHHhHHhc---CCCC-ChHHHHHHHHHHHhcCCH
Q 007808 373 MHGRGAGALSLFHEMKNAGEMPDGITFIGILCACTHMGLVEEGLSYFQSMAMDY---SIVP-QIEHYGCMVDLLARAGRL 448 (589)
Q Consensus 373 ~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~~~-~~~~~~~l~~~~~~~g~~ 448 (589)
..|++++|.+.++.+... .......+..+...+...|++++|...+++..... +..| ....+..+...|...|++
T Consensus 4 ~~g~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 82 (203)
T 3gw4_A 4 EAHDYALAERQAQALLAH-PATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNW 82 (203)
T ss_dssp ---CHHHHHHHHHHHHTS-TTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCH
T ss_pred ccccHHHHHHHHHHhcCC-hHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCH
Confidence 456666666644433321 11234456666666666777777777666654411 1111 134566666777777777
Q ss_pred HHHHHHHhhCC----CCC-C----HHHHHHHHHHHhcCCCHHHHHHHHHHHHccCCC--C----CcchHHHHHHHhhcCC
Q 007808 449 AEAVDFVKRMP----IEA-D----AVIWANLLGSCRVYKNVELAELALERLTELEPK--N----PANFVMLSNIYGDLGR 513 (589)
Q Consensus 449 ~~A~~~~~~~~----~~p-~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~--~----~~~~~~l~~~~~~~g~ 513 (589)
++|++.+++.. ..+ + ...+..+...+...|++++|...+++++++.+. + ..++..++.++...|+
T Consensus 83 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~ 162 (203)
T 3gw4_A 83 DAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKN 162 (203)
T ss_dssp HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcC
Confidence 77777766551 112 2 234555667777778888888888887764321 1 1234677888888888
Q ss_pred hHHHHHHHHHhh
Q 007808 514 WKDVARIKVAMR 525 (589)
Q Consensus 514 ~~~A~~~~~~~~ 525 (589)
+++|.+.+++..
T Consensus 163 ~~~A~~~~~~al 174 (203)
T 3gw4_A 163 LLEAQQHWLRAR 174 (203)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 888888877764
No 176
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.61 E-value=7.6e-06 Score=76.13 Aligned_cols=193 Identities=14% Similarity=0.083 Sum_probs=119.8
Q ss_pred HHHHHHHhhCC---CCCcchHHHHHHHHHhCC--ChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCc-HHHHHHHHH
Q 007808 347 ENAVDVFNSMD---TKDLITWNTIISGLAMHG--RGAGALSLFHEMKNAGEMPDGITFIGILCACTHMGL-VEEGLSYFQ 420 (589)
Q Consensus 347 ~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~--~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~-~~~A~~~~~ 420 (589)
++++.+++.+. ..+..+|+.-..++...+ .+++++++++++.+.. +-|...|+.-...+...|. ++++++.++
T Consensus 91 ~~EL~~~~~~L~~~PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~d-prNy~AW~~R~~vl~~l~~~~~eel~~~~ 169 (331)
T 3dss_A 91 KAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTD 169 (331)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCcCHHHHHHHHH
Confidence 34444444443 234455555555555555 3667777777777642 2255555555555555565 467777777
Q ss_pred HhHHhcCCCCChHHHHHHHHHHHhc--------------CCHHHHHHHHhhC-CCCC-CHHHHHHHHHHHhcC-------
Q 007808 421 SMAMDYSIVPQIEHYGCMVDLLARA--------------GRLAEAVDFVKRM-PIEA-DAVIWANLLGSCRVY------- 477 (589)
Q Consensus 421 ~~~~~~~~~~~~~~~~~l~~~~~~~--------------g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~------- 477 (589)
+++.. .+-|...|+....++.+. +.++++++.++++ ...| |...|+.+-..+.+.
T Consensus 170 ~~I~~--~p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~~~~~~~~ 247 (331)
T 3dss_A 170 SLITR--NFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAGSGRCELS 247 (331)
T ss_dssp HHHHH--CSCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSSSCGGGCC
T ss_pred HHHHH--CCCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCccccc
Confidence 76653 234455666555554443 4467777777766 2344 566666555554444
Q ss_pred ----CCHHHHHHHHHHHHccCCCCCcchHHHHHHH---hhcCChHHHHHHHHHhhhCCCccCCccceeeeCCeeeeeccc
Q 007808 478 ----KNVELAELALERLTELEPKNPANFVMLSNIY---GDLGRWKDVARIKVAMRDTGFKKLPGCSSIEVNEVVMLGCLS 550 (589)
Q Consensus 478 ----g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~---~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 550 (589)
+.++++++.+++++++.|++.-++..++.+. ...|..++....+.++. +
T Consensus 248 ~~~~~~l~~el~~~~elle~~pd~~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~------------------------~ 303 (331)
T 3dss_A 248 VEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLK------------------------A 303 (331)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTTTTHHHHHHHHHHHH------------------------H
T ss_pred hHHHHHHHHHHHHHHHHHhhCcccchHHHHHHHHHHhhcccccHHHHHHHHHHHH------------------------H
Confidence 4578999999999999998754444443322 24677888888888886 7
Q ss_pred cCCCchHHHHHHHHHH
Q 007808 551 RELDRKSIVRAEANMI 566 (589)
Q Consensus 551 ~~p~~~~~~~~l~~~~ 566 (589)
+||-..+.|..|+.-+
T Consensus 304 ~Dp~r~~~y~d~~~~~ 319 (331)
T 3dss_A 304 VDPMRAAYLDDLRSKF 319 (331)
T ss_dssp HCGGGHHHHHHHHHHH
T ss_pred hCcchhhHHHHHHHHH
Confidence 8899988888776544
No 177
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.60 E-value=2e-07 Score=81.28 Aligned_cols=93 Identities=13% Similarity=0.028 Sum_probs=73.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHhhC-CCCC-CHHHHHHHHHHHhcCCCHHHHHHHHHHHHccCCCCCcchHHHHHHHhh
Q 007808 433 EHYGCMVDLLARAGRLAEAVDFVKRM-PIEA-DAVIWANLLGSCRVYKNVELAELALERLTELEPKNPANFVMLSNIYGD 510 (589)
Q Consensus 433 ~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 510 (589)
..+..+..+|.+.|++++|+..++++ ...| +...+..+..++...|++++|+..|+++++++|+++.++..++.++..
T Consensus 89 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 168 (198)
T 2fbn_A 89 SCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNK 168 (198)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHH
Confidence 56777888889999999999988887 3334 677788888999999999999999999999999999999999999999
Q ss_pred cCChHHHH-HHHHHhh
Q 007808 511 LGRWKDVA-RIKVAMR 525 (589)
Q Consensus 511 ~g~~~~A~-~~~~~~~ 525 (589)
.|+.+++. ..++.+.
T Consensus 169 ~~~~~~~~~~~~~~~f 184 (198)
T 2fbn_A 169 LKEARKKDKLTFGGMF 184 (198)
T ss_dssp HHHHHC----------
T ss_pred HHHHHHHHHHHHHHHh
Confidence 99888887 4566664
No 178
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=98.60 E-value=4.8e-08 Score=93.09 Aligned_cols=133 Identities=14% Similarity=-0.009 Sum_probs=80.1
Q ss_pred HhHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHh
Q 007808 396 GITFIGILCACTHMGLVEEGLSYFQSMAMDYSIVPQIEHYGCMVDLLARAGRLAEAVDFVKRMPIEADAVIWANLLGSCR 475 (589)
Q Consensus 396 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~ 475 (589)
...+..+...+.+.|++++|...|++++.. .|+... +...|+..++...+. ...|..+..+|.
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~---~p~~~~-------~~~~~~~~~~~~~l~-------~~~~~nla~~~~ 241 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAY---MGDDFM-------FQLYGKYQDMALAVK-------NPCHLNIAACLI 241 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHH---SCHHHH-------HTCCHHHHHHHHHHH-------THHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHH---hccchh-------hhhcccHHHHHHHHH-------HHHHHHHHHHHH
Confidence 345666677777888888888888877642 243221 223333444433322 135677778888
Q ss_pred cCCCHHHHHHHHHHHHccCCCCCcchHHHHHHHhhcCChHHHHHHHHHhhhCCCccCCccceeeeCCeeeeeccccCCCc
Q 007808 476 VYKNVELAELALERLTELEPKNPANFVMLSNIYGDLGRWKDVARIKVAMRDTGFKKLPGCSSIEVNEVVMLGCLSRELDR 555 (589)
Q Consensus 476 ~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 555 (589)
+.|++++|+..++++++++|+++.++..++.+|...|++++|+..++++. +++|++
T Consensus 242 ~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al------------------------~l~p~~ 297 (338)
T 2if4_A 242 KLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQ------------------------KYAPDD 297 (338)
T ss_dssp TTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTT------------------------C-----
T ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH------------------------HHCCCC
Confidence 88888888888888888888888888888888888888888888888874 667777
Q ss_pred hHHHHHHHHHHHHc
Q 007808 556 KSIVRAEANMIKLL 569 (589)
Q Consensus 556 ~~~~~~l~~~~~~~ 569 (589)
+.++..|+.+....
T Consensus 298 ~~a~~~L~~l~~~~ 311 (338)
T 2if4_A 298 KAIRRELRALAEQE 311 (338)
T ss_dssp --------------
T ss_pred HHHHHHHHHHHHHH
Confidence 77777777774433
No 179
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.58 E-value=4.5e-07 Score=79.21 Aligned_cols=153 Identities=12% Similarity=0.002 Sum_probs=101.7
Q ss_pred hcCChHHHHH---HHhhCCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHH----CCCCC-CHhHHHHHHHHHhccCcHH
Q 007808 342 KCGIIENAVD---VFNSMDTKDLITWNTIISGLAMHGRGAGALSLFHEMKN----AGEMP-DGITFIGILCACTHMGLVE 413 (589)
Q Consensus 342 ~~g~~~~A~~---~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~----~~~~p-~~~~~~~l~~~~~~~g~~~ 413 (589)
..|++++|.+ .+..........+..+...+...|++++|+..+++..+ .+..| ....+..+...+...|+++
T Consensus 4 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 83 (203)
T 3gw4_A 4 EAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWD 83 (203)
T ss_dssp ---CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred ccccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHH
Confidence 4566777777 44432223445677777778888888888888877665 11122 2345677777888888988
Q ss_pred HHHHHHHHhHHhcCCCC-C----hHHHHHHHHHHHhcCCHHHHHHHHhhCC----CCCCH----HHHHHHHHHHhcCCCH
Q 007808 414 EGLSYFQSMAMDYSIVP-Q----IEHYGCMVDLLARAGRLAEAVDFVKRMP----IEADA----VIWANLLGSCRVYKNV 480 (589)
Q Consensus 414 ~A~~~~~~~~~~~~~~~-~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~p~~----~~~~~l~~~~~~~g~~ 480 (589)
+|...+++......-.+ + ...+..+...+...|++++|...+++.. ..++. ..+..+...+...|++
T Consensus 84 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 163 (203)
T 3gw4_A 84 AARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNL 163 (203)
T ss_dssp HHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCH
Confidence 88888887755321122 2 3456778888888999999888887751 11222 3356667788899999
Q ss_pred HHHHHHHHHHHccC
Q 007808 481 ELAELALERLTELE 494 (589)
Q Consensus 481 ~~A~~~~~~~~~~~ 494 (589)
++|.+.+++++++.
T Consensus 164 ~~A~~~~~~al~~~ 177 (203)
T 3gw4_A 164 LEAQQHWLRARDIF 177 (203)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999888743
No 180
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.57 E-value=7.5e-07 Score=73.17 Aligned_cols=113 Identities=15% Similarity=0.018 Sum_probs=83.9
Q ss_pred CHhHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC----hHHHHHHHHHHHhcCCHHHHHHHHhhC-CCCC-CHHHHH
Q 007808 395 DGITFIGILCACTHMGLVEEGLSYFQSMAMDYSIVPQ----IEHYGCMVDLLARAGRLAEAVDFVKRM-PIEA-DAVIWA 468 (589)
Q Consensus 395 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~ 468 (589)
+...+..+...+...|++++|...|++..+ ..|+ ...+..+..+|...|++++|++.+++. ...| +...+.
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~---~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 103 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALG---LDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALY 103 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHT---SCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHH---HcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHH
Confidence 345566666777777777777777777753 3455 566777777888888888888888776 2334 566777
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHccCCCCCcchHHHHHHHhh
Q 007808 469 NLLGSCRVYKNVELAELALERLTELEPKNPANFVMLSNIYGD 510 (589)
Q Consensus 469 ~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 510 (589)
.+..++...|++++|...|+++++++|+++..+..+..+..+
T Consensus 104 ~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 145 (148)
T 2dba_A 104 RRSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNISGP 145 (148)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHCS
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHhh
Confidence 778888889999999999999999999888777777666544
No 181
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.54 E-value=1.6e-07 Score=75.30 Aligned_cols=95 Identities=11% Similarity=-0.042 Sum_probs=84.4
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHccCCCCC---cchHHHHHHHhhcCChHHHHHHHHHhhhCCCccCCccceeeeCCee
Q 007808 468 ANLLGSCRVYKNVELAELALERLTELEPKNP---ANFVMLSNIYGDLGRWKDVARIKVAMRDTGFKKLPGCSSIEVNEVV 544 (589)
Q Consensus 468 ~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 544 (589)
..+...+...|++++|...|+++++..|+++ .++..++.++.+.|++++|+..++++.
T Consensus 6 ~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~------------------- 66 (129)
T 2xev_A 6 YNVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLV------------------- 66 (129)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH-------------------
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHH-------------------
Confidence 3456778899999999999999999999988 699999999999999999999999986
Q ss_pred eeeccccCCCc---hHHHHHHHHHHHHcccCCCCcchHhhhhhcc
Q 007808 545 MLGCLSRELDR---KSIVRAEANMIKLLPQNNHPLTFIVVIFSTF 586 (589)
Q Consensus 545 ~~~~~~~~p~~---~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 586 (589)
+.+|++ +.++..+|.+|..+|+.++|+..+..+...+
T Consensus 67 -----~~~p~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~ 106 (129)
T 2xev_A 67 -----SRYPTHDKAAGGLLKLGLSQYGEGKNTEAQQTLQQVATQY 106 (129)
T ss_dssp -----HHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred -----HHCCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 677888 8889999999999999999998887765443
No 182
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=98.54 E-value=8e-08 Score=78.11 Aligned_cols=100 Identities=11% Similarity=-0.019 Sum_probs=83.2
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHccCCCCC-------c-----chHHHHHHHhhcCChHHHHHHHHHhhhCCCccC
Q 007808 465 VIWANLLGSCRVYKNVELAELALERLTELEPKNP-------A-----NFVMLSNIYGDLGRWKDVARIKVAMRDTGFKKL 532 (589)
Q Consensus 465 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~-------~-----~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 532 (589)
..+......+.+.|++++|+..|+++++++|+++ . +|.+++.++.+.|++++|+..+++..+.
T Consensus 12 ~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l----- 86 (159)
T 2hr2_A 12 YLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHY----- 86 (159)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-----
Confidence 3455666778899999999999999999999832 2 8999999999999999999999998621
Q ss_pred CccceeeeCCeeeeeccccCCCchHHH----HHHHHHHHHcccCCCCcchHhh
Q 007808 533 PGCSSIEVNEVVMLGCLSRELDRKSIV----RAEANMIKLLPQNNHPLTFIVV 581 (589)
Q Consensus 533 ~~~~~~~~~~~~~~~~~~~~p~~~~~~----~~l~~~~~~~~~~~~~~~~~~~ 581 (589)
...+.+++|+++.++ ...|.++..+|+.++|+.....
T Consensus 87 ------------~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~k 127 (159)
T 2hr2_A 87 ------------FNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKK 127 (159)
T ss_dssp ------------HHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred ------------hhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHH
Confidence 001224599999999 9999999999999999876654
No 183
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.53 E-value=9.5e-06 Score=81.21 Aligned_cols=120 Identities=10% Similarity=-0.099 Sum_probs=62.5
Q ss_pred HHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcC-CHHHHHHHHhhC--CCCCCHHHHHHHHHHHh
Q 007808 399 FIGILCACTHMGLVEEGLSYFQSMAMDYSIVPQIEHYGCMVDLLARAG-RLAEAVDFVKRM--PIEADAVIWANLLGSCR 475 (589)
Q Consensus 399 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~ 475 (589)
|...+....+.++.+.|..+|+++ +.. ..+...|...+..-...+ +.+.|..+|+.+ ..+.+...|...+....
T Consensus 289 w~~y~~~~~r~~~~~~AR~i~~~A-~~~--~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~~~~~~~~yid~e~ 365 (493)
T 2uy1_A 289 RINHLNYVLKKRGLELFRKLFIEL-GNE--GVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPDSTLLKEEFFLFLL 365 (493)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHH-TTS--CCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHh-hCC--CCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Confidence 444445454556666677776666 221 123334432222222222 466666666655 11112334444555555
Q ss_pred cCCCHHHHHHHHHHHHccCCCCCcchHHHHHHHhhcCChHHHHHHHHHhh
Q 007808 476 VYKNVELAELALERLTELEPKNPANFVMLSNIYGDLGRWKDVARIKVAMR 525 (589)
Q Consensus 476 ~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 525 (589)
+.|+.+.|..+|+++. .+...+...+..-...|+.+.+.++++++.
T Consensus 366 ~~~~~~~aR~l~er~~----k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~ 411 (493)
T 2uy1_A 366 RIGDEENARALFKRLE----KTSRMWDSMIEYEFMVGSMELFRELVDQKM 411 (493)
T ss_dssp HHTCHHHHHHHHHHSC----CBHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHH----HHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 6666666766666662 234455555555556677666666665554
No 184
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.49 E-value=1.2e-06 Score=87.11 Aligned_cols=129 Identities=4% Similarity=-0.081 Sum_probs=102.6
Q ss_pred CcchHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCC----------------HhHHHHHHHHHhccCcHHHHHHHHHHhH
Q 007808 360 DLITWNTIISGLAMHGRGAGALSLFHEMKNAGEMPD----------------GITFIGILCACTHMGLVEEGLSYFQSMA 423 (589)
Q Consensus 360 ~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~----------------~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 423 (589)
....|..+...|.+.|++++|+..|++..+. .|+ ...|..+..+|.+.|++++|+..+++++
T Consensus 267 ~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~--~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al 344 (457)
T 1kt0_A 267 QAAIVKEKGTVYFKGGKYMQAVIQYGKIVSW--LEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKAL 344 (457)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--hcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 3457888899999999999999999999884 343 4788889999999999999999999997
Q ss_pred HhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHhhC-CCCC-CHHHHHHHHHHHhcCCCHHHHHH-HHHHHHc
Q 007808 424 MDYSIVPQIEHYGCMVDLLARAGRLAEAVDFVKRM-PIEA-DAVIWANLLGSCRVYKNVELAEL-ALERLTE 492 (589)
Q Consensus 424 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~-~~~~~~~ 492 (589)
.. .+.+...|..+..+|...|++++|+..|+++ .+.| +...+..+..++.+.++.++|.+ .+++++.
T Consensus 345 ~~--~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~f~ 414 (457)
T 1kt0_A 345 GL--DSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKKAKEHNERDRRIYANMFK 414 (457)
T ss_dssp HH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred hc--CCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 63 2345788899999999999999999999998 5666 44567777788888888887764 4555554
No 185
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=98.47 E-value=7.7e-08 Score=78.01 Aligned_cols=62 Identities=11% Similarity=0.162 Sum_probs=54.0
Q ss_pred HHHHHHHHHHHHccCCCCCcchHHHHHHHhhcC-----------ChHHHHHHHHHhhhCCCccCCccceeeeCCeeeeec
Q 007808 480 VELAELALERLTELEPKNPANFVMLSNIYGDLG-----------RWKDVARIKVAMRDTGFKKLPGCSSIEVNEVVMLGC 548 (589)
Q Consensus 480 ~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g-----------~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 548 (589)
+++|+..|+++++++|++..+|.+++.+|...| ++++|++.|++..
T Consensus 62 ~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl----------------------- 118 (158)
T 1zu2_A 62 IQEAITKFEEALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAV----------------------- 118 (158)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH-----------------------
T ss_pred HHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHH-----------------------
Confidence 679999999999999999999999999999875 8999999999986
Q ss_pred cccCCCchHHHHHHHHH
Q 007808 549 LSRELDRKSIVRAEANM 565 (589)
Q Consensus 549 ~~~~p~~~~~~~~l~~~ 565 (589)
+++|+++.....+..+
T Consensus 119 -~l~P~~~~y~~al~~~ 134 (158)
T 1zu2_A 119 -DEQPDNTHYLKSLEMT 134 (158)
T ss_dssp -HHCTTCHHHHHHHHHH
T ss_pred -HhCCCCHHHHHHHHHH
Confidence 7788887776665443
No 186
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=98.45 E-value=2.8e-07 Score=87.73 Aligned_cols=145 Identities=10% Similarity=-0.008 Sum_probs=88.1
Q ss_pred cchHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHH
Q 007808 361 LITWNTIISGLAMHGRGAGALSLFHEMKNAGEMPDGITFIGILCACTHMGLVEEGLSYFQSMAMDYSIVPQIEHYGCMVD 440 (589)
Q Consensus 361 ~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~ 440 (589)
...+..+...+.+.|++++|+..|++.... .|+... +...|+.+++...+. ...|..+..
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~-------~~~~~~~~~~~~~l~-----------~~~~~nla~ 238 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAY--MGDDFM-------FQLYGKYQDMALAVK-----------NPCHLNIAA 238 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHH--SCHHHH-------HTCCHHHHHHHHHHH-----------THHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--hccchh-------hhhcccHHHHHHHHH-----------HHHHHHHHH
Confidence 345777888888999999999999998873 555432 334455555543321 136788999
Q ss_pred HHHhcCCHHHHHHHHhhC-CCCC-CHHHHHHHHHHHhcCCCHHHHHHHHHHHHccCCCCCcchHHHHHHHh-hcCChHHH
Q 007808 441 LLARAGRLAEAVDFVKRM-PIEA-DAVIWANLLGSCRVYKNVELAELALERLTELEPKNPANFVMLSNIYG-DLGRWKDV 517 (589)
Q Consensus 441 ~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~-~~g~~~~A 517 (589)
+|.+.|++++|+..++++ ...| +...|..+..+|...|++++|+..|+++++++|+++.++..+..+.. ..+..+++
T Consensus 239 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a 318 (338)
T 2if4_A 239 CLIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQ 318 (338)
T ss_dssp HHHTTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC--------------------------
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999987 3445 67888889999999999999999999999999999999999998844 46677888
Q ss_pred HHHHHHhh
Q 007808 518 ARIKVAMR 525 (589)
Q Consensus 518 ~~~~~~~~ 525 (589)
.+.+++|.
T Consensus 319 ~~~~~~~l 326 (338)
T 2if4_A 319 KEMYKGIF 326 (338)
T ss_dssp --------
T ss_pred HHHHHHhh
Confidence 88888885
No 187
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.45 E-value=4.1e-05 Score=71.23 Aligned_cols=231 Identities=11% Similarity=0.055 Sum_probs=146.9
Q ss_pred HhCCChH-HHHHHHHHHHHcCCCCCcHH-HHHHHHHHHHhcCC----------hhHHHHHHHHHHHcCCCCChhHHHHHH
Q 007808 270 ANNGLFF-EVLDAFKRMLTEGRVFPNDA-TIVTVLSACARLGA----------LDFSKWVHVYAEYNGYQGNVCVGNALI 337 (589)
Q Consensus 270 ~~~g~~~-~A~~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~~~----------~~~a~~~~~~~~~~~~~~~~~~~~~l~ 337 (589)
.+.|.++ +|++++..++..+ |+.. .++.--..+...+. ++++..++..+.... |.+..+++.-.
T Consensus 40 ~~~~e~s~eaL~~t~~~L~~n---P~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~-PKny~aW~hR~ 115 (331)
T 3dss_A 40 RQAGELDESVLELTSQILGAN---PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRC 115 (331)
T ss_dssp HHTTCCSHHHHHHHHHHHTTC---TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred HHcCCCCHHHHHHHHHHHHHC---chhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhC-CCCHHHHHHHH
Confidence 3445544 6677777777643 4332 23332222222221 456666777766654 55666666666
Q ss_pred HHHHhcC--ChHHHHHHHhhCC---CCCcchHHHHHHHHHhCCC-hHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhcc--
Q 007808 338 DMYAKCG--IIENAVDVFNSMD---TKDLITWNTIISGLAMHGR-GAGALSLFHEMKNAGEMPDGITFIGILCACTHM-- 409 (589)
Q Consensus 338 ~~~~~~g--~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~-~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~-- 409 (589)
-++...| .+++++.+++.+. ..|..+|+--..++...|. ++++++.++++++.. +-|...|+.....+...
T Consensus 116 wlL~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~-p~N~SAW~~R~~ll~~l~~ 194 (331)
T 3dss_A 116 WLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSWHYRSCLLPQLHP 194 (331)
T ss_dssp HHHHHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHHSC
T ss_pred HHHhccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHhhh
Confidence 6666666 3778888887776 3466677777777777777 588888888888853 33555665555444433
Q ss_pred ------------CcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhc-----------CCHHHHHHHHhhC-CCCCCHH
Q 007808 410 ------------GLVEEGLSYFQSMAMDYSIVPQIEHYGCMVDLLARA-----------GRLAEAVDFVKRM-PIEADAV 465 (589)
Q Consensus 410 ------------g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----------g~~~~A~~~~~~~-~~~p~~~ 465 (589)
+.++++++.++..+.. .+-|...|+.+-..+.+. +.++++++.++++ ...||.
T Consensus 195 ~~~~~~~~~~~~~~~~eEle~~~~ai~~--~P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~~pd~- 271 (331)
T 3dss_A 195 QPDSGPQGRLPENVLLKELELVQNAFFT--DPNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQELEPEN- 271 (331)
T ss_dssp CC------CCCHHHHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHHCTTC-
T ss_pred ccccccccccchHHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhhCccc-
Confidence 5678888888888753 244567777665555555 4578888888887 456654
Q ss_pred HHHHHH-----HHHhcCCCHHHHHHHHHHHHccCCCCCcchHHHHHHH
Q 007808 466 IWANLL-----GSCRVYKNVELAELALERLTELEPKNPANFVMLSNIY 508 (589)
Q Consensus 466 ~~~~l~-----~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 508 (589)
.|..+. .+....|..++....+.++++++|....-|..+..-+
T Consensus 272 ~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Dp~r~~~y~d~~~~~ 319 (331)
T 3dss_A 272 KWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKF 319 (331)
T ss_dssp HHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHCGGGHHHHHHHHHHH
T ss_pred chHHHHHHHHHHhhcccccHHHHHHHHHHHHHhCcchhhHHHHHHHHH
Confidence 333222 2233578889999999999999998666666655443
No 188
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.43 E-value=2.6e-08 Score=78.41 Aligned_cols=83 Identities=11% Similarity=0.090 Sum_probs=72.7
Q ss_pred cCCCHHHHHHHHHHHHcc---CCCCCcchHHHHHHHhhcCChHHHHHHHHHhhhCCCccCCccceeeeCCeeeeeccccC
Q 007808 476 VYKNVELAELALERLTEL---EPKNPANFVMLSNIYGDLGRWKDVARIKVAMRDTGFKKLPGCSSIEVNEVVMLGCLSRE 552 (589)
Q Consensus 476 ~~g~~~~A~~~~~~~~~~---~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 552 (589)
..|++++|+..|++++++ +|+++.++..++.+|.+.|++++|++.++++. +++
T Consensus 2 ~~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al------------------------~~~ 57 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGV------------------------KQF 57 (117)
T ss_dssp -----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH------------------------HHC
T ss_pred CCCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHH------------------------HhC
Confidence 468999999999999999 58888999999999999999999999999986 789
Q ss_pred CCchHHHHHHHHHHHHcccCCCCcchHhhh
Q 007808 553 LDRKSIVRAEANMIKLLPQNNHPLTFIVVI 582 (589)
Q Consensus 553 p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 582 (589)
|+++.++..+|.+|..+|+.++|+..+...
T Consensus 58 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 87 (117)
T 3k9i_A 58 PNHQALRVFYAMVLYNLGRYEQGVELLLKI 87 (117)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 999999999999999999999998876644
No 189
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.42 E-value=1.9e-07 Score=78.46 Aligned_cols=94 Identities=13% Similarity=0.014 Sum_probs=82.7
Q ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHcc------------------CCCCCcchHHHHHHHhhcCChHHHHHHHHHhh
Q 007808 464 AVIWANLLGSCRVYKNVELAELALERLTEL------------------EPKNPANFVMLSNIYGDLGRWKDVARIKVAMR 525 (589)
Q Consensus 464 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~------------------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 525 (589)
...+......+.+.|++++|+..|++++++ +|.+..+|..++.+|.+.|++++|+..++++.
T Consensus 11 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al 90 (162)
T 3rkv_A 11 VEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVL 90 (162)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 345666777888899999999999999887 66667899999999999999999999999986
Q ss_pred hCCCccCCccceeeeCCeeeeeccccCCCchHHHHHHHHHHHHcccCCCCcchHhh
Q 007808 526 DTGFKKLPGCSSIEVNEVVMLGCLSRELDRKSIVRAEANMIKLLPQNNHPLTFIVV 581 (589)
Q Consensus 526 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 581 (589)
+++|+++.++..+|.+|..+|+.++|+..+..
T Consensus 91 ------------------------~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~ 122 (162)
T 3rkv_A 91 ------------------------KREETNEKALFRRAKARIAAWKLDEAEEDLKL 122 (162)
T ss_dssp ------------------------HHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred ------------------------hcCCcchHHHHHHHHHHHHHhcHHHHHHHHHH
Confidence 78999999999999999999999998877654
No 190
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.39 E-value=5.2e-07 Score=90.23 Aligned_cols=120 Identities=8% Similarity=-0.027 Sum_probs=94.2
Q ss_pred HHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHhhC-CCCC-CHHHHHHHHHHHhcCCC
Q 007808 402 ILCACTHMGLVEEGLSYFQSMAMDYSIVPQIEHYGCMVDLLARAGRLAEAVDFVKRM-PIEA-DAVIWANLLGSCRVYKN 479 (589)
Q Consensus 402 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~ 479 (589)
+...+.+.|++++|.+.++++.+. .+.+...|..+..+|.+.|++++|++.++++ ...| +...+..+..+|...|+
T Consensus 12 lg~~~~~~g~~~~A~~~~~~Al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~ 89 (477)
T 1wao_1 12 QANDYFKAKDYENAIKFYSQAIEL--NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGK 89 (477)
T ss_dssp SSSSTTTTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Confidence 344566778888888888888753 2234777888888899999999999888887 3445 56778888899999999
Q ss_pred HHHHHHHHHHHHccCCCCCcchHHHHHH--HhhcCChHHHHHHHHH
Q 007808 480 VELAELALERLTELEPKNPANFVMLSNI--YGDLGRWKDVARIKVA 523 (589)
Q Consensus 480 ~~~A~~~~~~~~~~~p~~~~~~~~l~~~--~~~~g~~~~A~~~~~~ 523 (589)
+++|++.|+++++++|+++.++..++.+ +.+.|++++|++.+++
T Consensus 90 ~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~ 135 (477)
T 1wao_1 90 FRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEH 135 (477)
T ss_dssp HHHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC------
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 9999999999999999999999999888 8889999999999884
No 191
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.38 E-value=7.5e-07 Score=71.25 Aligned_cols=110 Identities=7% Similarity=-0.049 Sum_probs=67.8
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHhhC-CC----CCC----HHHHH
Q 007808 398 TFIGILCACTHMGLVEEGLSYFQSMAMDYSIVPQIEHYGCMVDLLARAGRLAEAVDFVKRM-PI----EAD----AVIWA 468 (589)
Q Consensus 398 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~----~p~----~~~~~ 468 (589)
.+..+...+...|++++|...++++... .+.+...+..++..|...|++++|...++++ .. .++ ...+.
T Consensus 6 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (131)
T 1elr_A 6 KEKELGNDAYKKKDFDTALKHYDKAKEL--DPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYA 83 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHH
Confidence 3445555555666666666666665442 1234455556666666666666666666655 11 122 55666
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHccCCCCCcchHHHHHHHhh
Q 007808 469 NLLGSCRVYKNVELAELALERLTELEPKNPANFVMLSNIYGD 510 (589)
Q Consensus 469 ~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 510 (589)
.+..++...|++++|.+.++++++..|+ +.....+..+...
T Consensus 84 ~la~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~l~~~~~~ 124 (131)
T 1elr_A 84 RIGNSYFKEEKYKDAIHFYNKSLAEHRT-PDVLKKCQQAEKI 124 (131)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHhCCC-HHHHHHHHHHHHH
Confidence 6777788888888888888888888774 6666666655443
No 192
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.36 E-value=3.1e-06 Score=83.91 Aligned_cols=162 Identities=5% Similarity=-0.146 Sum_probs=111.0
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHC-CCCCCHh----HHHHHHHHHhccCcHHHHHHHHHHhHHh---cCCCCC-hHH
Q 007808 364 WNTIISGLAMHGRGAGALSLFHEMKNA-GEMPDGI----TFIGILCACTHMGLVEEGLSYFQSMAMD---YSIVPQ-IEH 434 (589)
Q Consensus 364 ~~~l~~~~~~~~~~~~A~~~~~~m~~~-~~~p~~~----~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~-~~~ 434 (589)
+..++..|...|++++|.+.+.++... +..++.. ..+.+...+...|+++.|..+++..... .+..+. ..+
T Consensus 58 l~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 137 (434)
T 4b4t_Q 58 ILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSL 137 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHH
Confidence 556777888888888888888776542 1112221 2233334455678888888888776442 122222 457
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhCC-------CCC-CHHHHHHHHHHHhcCCCHHHHHHHHHHHHccCC---CC----Cc
Q 007808 435 YGCMVDLLARAGRLAEAVDFVKRMP-------IEA-DAVIWANLLGSCRVYKNVELAELALERLTELEP---KN----PA 499 (589)
Q Consensus 435 ~~~l~~~~~~~g~~~~A~~~~~~~~-------~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p---~~----~~ 499 (589)
+..++..|...|++++|..+++++. ..| ....+..++..|...|++++|..++++++.+.| ++ ..
T Consensus 138 ~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 217 (434)
T 4b4t_Q 138 SIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAE 217 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHH
T ss_pred HHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHH
Confidence 7788899999999999998888751 122 235677777889999999999999999887542 21 23
Q ss_pred chHHHHHHHhhcCChHHHHHHHHHhh
Q 007808 500 NFVMLSNIYGDLGRWKDVARIKVAMR 525 (589)
Q Consensus 500 ~~~~l~~~~~~~g~~~~A~~~~~~~~ 525 (589)
.+..++.++...|++++|...+.+..
T Consensus 218 ~~~~~g~~~~~~~~y~~A~~~~~~a~ 243 (434)
T 4b4t_Q 218 LDLMSGILHCEDKDYKTAFSYFFESF 243 (434)
T ss_dssp HHHHHHHHTTSSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 56677788888899999988877764
No 193
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.36 E-value=1.4e-06 Score=86.43 Aligned_cols=158 Identities=9% Similarity=-0.011 Sum_probs=117.4
Q ss_pred HHHHHhCCChHHHHHHHHHHHHCCCCCCH----------------hHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC
Q 007808 368 ISGLAMHGRGAGALSLFHEMKNAGEMPDG----------------ITFIGILCACTHMGLVEEGLSYFQSMAMDYSIVPQ 431 (589)
Q Consensus 368 ~~~~~~~~~~~~A~~~~~~m~~~~~~p~~----------------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 431 (589)
...+.+.|++++|++.|.++.+....... ..+..++..|...|++++|.+++..+....+..++
T Consensus 11 a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~ 90 (434)
T 4b4t_Q 11 ARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAK 90 (434)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccc
Confidence 34466778888888888888774322111 23677889999999999999999988664333333
Q ss_pred h----HHHHHHHHHHHhcCCHHHHHHHHhhC-------CCCCC-HHHHHHHHHHHhcCCCHHHHHHHHHHHHccC-----
Q 007808 432 I----EHYGCMVDLLARAGRLAEAVDFVKRM-------PIEAD-AVIWANLLGSCRVYKNVELAELALERLTELE----- 494 (589)
Q Consensus 432 ~----~~~~~l~~~~~~~g~~~~A~~~~~~~-------~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~----- 494 (589)
. .+.+.+...+...|++++|.+++++. ...+. ..++..+...+...|++++|..+++++....
T Consensus 91 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~ 170 (434)
T 4b4t_Q 91 SKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDD 170 (434)
T ss_dssp HHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSC
T ss_pred hHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhccc
Confidence 2 23444556666789999999888765 22333 4567778899999999999999999988731
Q ss_pred -CCCCcchHHHHHHHhhcCChHHHHHHHHHhh
Q 007808 495 -PKNPANFVMLSNIYGDLGRWKDVARIKVAMR 525 (589)
Q Consensus 495 -p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 525 (589)
|....++..++.+|...|++++|..++++..
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al 202 (434)
T 4b4t_Q 171 KPSLVDVHLLESKVYHKLRNLAKSKASLTAAR 202 (434)
T ss_dssp STHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHhCcHHHHHHHHHHHH
Confidence 2234588899999999999999999999885
No 194
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.33 E-value=9.7e-07 Score=73.66 Aligned_cols=127 Identities=13% Similarity=0.055 Sum_probs=75.4
Q ss_pred HHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC----hHHHHHHHHHHHhcCCHHHHHHHHhhCC----CCCC----HHH
Q 007808 399 FIGILCACTHMGLVEEGLSYFQSMAMDYSIVPQ----IEHYGCMVDLLARAGRLAEAVDFVKRMP----IEAD----AVI 466 (589)
Q Consensus 399 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~p~----~~~ 466 (589)
+..+...+...|++++|...+++......-.++ ...+..+...|...|++++|.+.+++.. ..++ ...
T Consensus 12 ~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 91 (164)
T 3ro3_A 12 FGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQS 91 (164)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHH
Confidence 444444455555555555555544332110111 1245556666666666666666665541 1111 334
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHccCCC------CCcchHHHHHHHhhcCChHHHHHHHHHhh
Q 007808 467 WANLLGSCRVYKNVELAELALERLTELEPK------NPANFVMLSNIYGDLGRWKDVARIKVAMR 525 (589)
Q Consensus 467 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 525 (589)
+..+...+...|++++|.+.+++++++.+. ....+..++.++...|++++|.+.+++..
T Consensus 92 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~ 156 (164)
T 3ro3_A 92 CYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHL 156 (164)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 555667777888888888888888764321 23467788888888888888888888764
No 195
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=98.33 E-value=2.4e-06 Score=82.18 Aligned_cols=90 Identities=14% Similarity=0.083 Sum_probs=80.2
Q ss_pred ChHHHHHHHHHHHhcCCHHHHHHHHhhC-CCCC-CHHHHHHHHHHHhcCCCHHHHHHHHHHHHccCCCCCcchHHHHHHH
Q 007808 431 QIEHYGCMVDLLARAGRLAEAVDFVKRM-PIEA-DAVIWANLLGSCRVYKNVELAELALERLTELEPKNPANFVMLSNIY 508 (589)
Q Consensus 431 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 508 (589)
+...|..+..+|.+.|++++|++.++++ ...| +...+..+..+|...|++++|+..|+++++++|+++.++..++.++
T Consensus 272 ~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~ 351 (370)
T 1ihg_A 272 ALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVK 351 (370)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 3567888999999999999999999988 5556 5778888889999999999999999999999999999999999999
Q ss_pred hhcCChHHHHHH
Q 007808 509 GDLGRWKDVARI 520 (589)
Q Consensus 509 ~~~g~~~~A~~~ 520 (589)
...++.+++.+.
T Consensus 352 ~~~~~~~~a~k~ 363 (370)
T 1ihg_A 352 QKIKAQKDKEKA 363 (370)
T ss_dssp HHHHHHHHHHHC
T ss_pred HHHHHHHHHHHH
Confidence 999998888764
No 196
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=98.30 E-value=2.7e-06 Score=64.42 Aligned_cols=88 Identities=16% Similarity=0.087 Sum_probs=73.0
Q ss_pred CHHHHHHHHHHHhcCCCHHHHHHHHHHHHccCCCCCcchHHHHHHHhhcCChHHHHHHHHHhhhCCCccCCccceeeeCC
Q 007808 463 DAVIWANLLGSCRVYKNVELAELALERLTELEPKNPANFVMLSNIYGDLGRWKDVARIKVAMRDTGFKKLPGCSSIEVNE 542 (589)
Q Consensus 463 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 542 (589)
+...+..+..++...|++++|+..|+++++++|+++.+|..++.+|...|++++|++.+++..
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al----------------- 68 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGI----------------- 68 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHH-----------------
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH-----------------
Confidence 567788888999999999999999999999999999999999999999999999999999885
Q ss_pred eeeeeccccCC--CchHHHHHHHHHHHHcccCCC
Q 007808 543 VVMLGCLSREL--DRKSIVRAEANMIKLLPQNNH 574 (589)
Q Consensus 543 ~~~~~~~~~~p--~~~~~~~~l~~~~~~~~~~~~ 574 (589)
++.| .+......+..++...+....
T Consensus 69 -------~l~~~~~~~~~~~~l~~~l~~~~~~~~ 95 (100)
T 3ma5_A 69 -------EVAREEGTQKDLSELQDAKLKAEGLEH 95 (100)
T ss_dssp -------HHHHHHSCHHHHHHHHHHHHHHHTTC-
T ss_pred -------hhhhcCCchhHHHHHHHHHHHcccccc
Confidence 2322 445566667777766665543
No 197
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.29 E-value=2.1e-05 Score=80.11 Aligned_cols=169 Identities=9% Similarity=-0.002 Sum_probs=131.2
Q ss_pred ChHHHHHHHhhCCC---CCcchHHHHHHHHHhCCC----------hHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccC-
Q 007808 345 IIENAVDVFNSMDT---KDLITWNTIISGLAMHGR----------GAGALSLFHEMKNAGEMPDGITFIGILCACTHMG- 410 (589)
Q Consensus 345 ~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~----------~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g- 410 (589)
..++|++.++.+.. .+..+|+.-..++...|+ ++++++.++++.+.. +-+..+|..-...+.+.|
T Consensus 44 ~~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~-pK~y~aW~hR~w~l~~l~~ 122 (567)
T 1dce_A 44 LDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPE 122 (567)
T ss_dssp CSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCSS
T ss_pred CCHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHccc
Confidence 34566777776652 244556665566665555 889999999999852 336677888777888888
Q ss_pred -cHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcC-CHHHHHHHHhhC-CCCC-CHHHHHHHHHHHhcC---------
Q 007808 411 -LVEEGLSYFQSMAMDYSIVPQIEHYGCMVDLLARAG-RLAEAVDFVKRM-PIEA-DAVIWANLLGSCRVY--------- 477 (589)
Q Consensus 411 -~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~--------- 477 (589)
+++++++.++++.+. .+-+...|+.-..++.+.| .++++++.++++ ...| +...|+.....+.+.
T Consensus 123 ~~~~~el~~~~k~l~~--d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~~~ 200 (567)
T 1dce_A 123 PNWARELELCARFLEA--DERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQ 200 (567)
T ss_dssp CCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSC
T ss_pred ccHHHHHHHHHHHHhh--ccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhccccccccc
Confidence 779999999999863 2456788888888888888 899999999888 4555 677788777665542
Q ss_pred -----CCHHHHHHHHHHHHccCCCCCcchHHHHHHHhhcCChHH
Q 007808 478 -----KNVELAELALERLTELEPKNPANFVMLSNIYGDLGRWKD 516 (589)
Q Consensus 478 -----g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 516 (589)
+.++++.+.+++++.++|++..+|..+..++.+.|++++
T Consensus 201 ~~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 201 GRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp CSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCCSC
T ss_pred ccccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCCCccc
Confidence 568999999999999999999999999999999998665
No 198
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=98.26 E-value=3.1e-06 Score=66.06 Aligned_cols=76 Identities=9% Similarity=0.063 Sum_probs=62.6
Q ss_pred HHHHHHhhC-CCCC-CHHHHHHHHHHHhcCCCHHHHHHHHHHHHccCCCCCcchHHHHHHHhhcCChHHHHHHHHHhh
Q 007808 450 EAVDFVKRM-PIEA-DAVIWANLLGSCRVYKNVELAELALERLTELEPKNPANFVMLSNIYGDLGRWKDVARIKVAMR 525 (589)
Q Consensus 450 ~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 525 (589)
+|++.++++ ...| +...+..+...+...|++++|+..++++++++|+++..+..++.+|...|++++|+..+++..
T Consensus 3 ~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 80 (115)
T 2kat_A 3 AITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGL 80 (115)
T ss_dssp CHHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 355556655 3344 567777888888899999999999999999999988899999999999999999999998885
No 199
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=98.25 E-value=3.6e-07 Score=70.82 Aligned_cols=95 Identities=14% Similarity=0.010 Sum_probs=78.4
Q ss_pred CChHHHHHHHHHHHhcCCHHHHHHHHhhC-CCCC-CHHHHHHHHHHHhcCCCHHHHHHHHHHHHccCCCC------Ccch
Q 007808 430 PQIEHYGCMVDLLARAGRLAEAVDFVKRM-PIEA-DAVIWANLLGSCRVYKNVELAELALERLTELEPKN------PANF 501 (589)
Q Consensus 430 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~------~~~~ 501 (589)
++...+..+...+.+.|++++|++.++++ ...| +...+..+..++...|++++|++.++++++++|++ ...+
T Consensus 2 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~ 81 (111)
T 2l6j_A 2 SQFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQ 81 (111)
T ss_dssp THHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHH
T ss_pred chHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHH
Confidence 34566778888899999999999999887 3344 67788888899999999999999999999999998 7778
Q ss_pred HHHHHHHhhcCChHHHHHHHHHh
Q 007808 502 VMLSNIYGDLGRWKDVARIKVAM 524 (589)
Q Consensus 502 ~~l~~~~~~~g~~~~A~~~~~~~ 524 (589)
..++.++...|++++|++.++++
T Consensus 82 ~~~~~~~~~~~~~~~a~~~~~~~ 104 (111)
T 2l6j_A 82 YRLELAQGAVGSVQIPVVEVDEL 104 (111)
T ss_dssp HHHHHHHHHHHCCCCCSSSSSSC
T ss_pred HHHHHHHHHHHhHhhhHhHHHHh
Confidence 88888888888887776655543
No 200
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=98.22 E-value=6.1e-06 Score=81.86 Aligned_cols=125 Identities=13% Similarity=0.113 Sum_probs=96.2
Q ss_pred HHhccCcHHHHHHHHHHhHHhcC--CCCC----hHHHHHHHHHHHhcCCHHHHHHHHhhC---------CCCCC-HHHHH
Q 007808 405 ACTHMGLVEEGLSYFQSMAMDYS--IVPQ----IEHYGCMVDLLARAGRLAEAVDFVKRM---------PIEAD-AVIWA 468 (589)
Q Consensus 405 ~~~~~g~~~~A~~~~~~~~~~~~--~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~---------~~~p~-~~~~~ 468 (589)
.+...|++++|+.++++.+.... +.|+ ..+++.|+.+|...|++++|+.++++. +..|+ ..+++
T Consensus 318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~ 397 (490)
T 3n71_A 318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVM 397 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 35577888888888877755321 1222 457888899999999999998888775 13343 35688
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHc-----cCCCCCcc---hHHHHHHHhhcCChHHHHHHHHHhhhCCC
Q 007808 469 NLLGSCRVYKNVELAELALERLTE-----LEPKNPAN---FVMLSNIYGDLGRWKDVARIKVAMRDTGF 529 (589)
Q Consensus 469 ~l~~~~~~~g~~~~A~~~~~~~~~-----~~p~~~~~---~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 529 (589)
.|...|..+|++++|+.+++++++ +.|++|.+ ...+..++...|++++|+..+++++++..
T Consensus 398 nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~~~ 466 (490)
T 3n71_A 398 RAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREAAL 466 (490)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 888999999999999999999987 56877654 45777888899999999999999976443
No 201
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.16 E-value=8.4e-06 Score=67.79 Aligned_cols=133 Identities=12% Similarity=0.067 Sum_probs=83.3
Q ss_pred hHHHHHHHHHhCCChHHHHHHHHHHHHCCCC-CC----HhHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC----hH
Q 007808 363 TWNTIISGLAMHGRGAGALSLFHEMKNAGEM-PD----GITFIGILCACTHMGLVEEGLSYFQSMAMDYSIVPQ----IE 433 (589)
Q Consensus 363 ~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~-p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~ 433 (589)
++..+...+...|++++|+..+++..+.... ++ ..++..+...+...|++++|...+++......-.++ ..
T Consensus 11 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 90 (164)
T 3ro3_A 11 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQ 90 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHH
Confidence 4455556666667777777766665542100 11 135666677777778888887777776542211111 34
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhhCC----CCCC----HHHHHHHHHHHhcCCCHHHHHHHHHHHHccCC
Q 007808 434 HYGCMVDLLARAGRLAEAVDFVKRMP----IEAD----AVIWANLLGSCRVYKNVELAELALERLTELEP 495 (589)
Q Consensus 434 ~~~~l~~~~~~~g~~~~A~~~~~~~~----~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p 495 (589)
.+..+...+...|++++|.+.+++.. ..++ ...+..+...+...|++++|.+.+++++++..
T Consensus 91 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~ 160 (164)
T 3ro3_A 91 SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISR 160 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHH
Confidence 56667777888888888887777651 1111 34456666778888999999999888887543
No 202
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=98.16 E-value=5.6e-06 Score=62.45 Aligned_cols=77 Identities=17% Similarity=0.295 Sum_probs=54.3
Q ss_pred HHHHhcCCCHHHHHHHHHHHHccCCCCCc-chHHHHHHHhhcCChHHHHHHHHHhhhCCCccCCccceeeeCCeeeeecc
Q 007808 471 LGSCRVYKNVELAELALERLTELEPKNPA-NFVMLSNIYGDLGRWKDVARIKVAMRDTGFKKLPGCSSIEVNEVVMLGCL 549 (589)
Q Consensus 471 ~~~~~~~g~~~~A~~~~~~~~~~~p~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 549 (589)
...+...|++++|+..++++++.+|+++. .+..++.+|...|++++|++.+++..
T Consensus 7 a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al------------------------ 62 (99)
T 2kc7_A 7 IKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAI------------------------ 62 (99)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHH------------------------
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHH------------------------
Confidence 34556677777777777777777777777 77777777777777777777777774
Q ss_pred ccCCCchHHH--HHHHHHHHHccc
Q 007808 550 SRELDRKSIV--RAEANMIKLLPQ 571 (589)
Q Consensus 550 ~~~p~~~~~~--~~l~~~~~~~~~ 571 (589)
+++|+++.++ ..++.++....+
T Consensus 63 ~~~p~~~~~~~~~~~~~a~~~~~~ 86 (99)
T 2kc7_A 63 ELNPDSPALQARKMVMDILNFYNK 86 (99)
T ss_dssp HHCTTSTHHHHHHHHHHHHHHHCC
T ss_pred hcCCCcHHHHHHHHHHHHHHHHHH
Confidence 5677777766 555555554443
No 203
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=98.15 E-value=1.9e-06 Score=67.25 Aligned_cols=77 Identities=8% Similarity=-0.103 Sum_probs=71.3
Q ss_pred HHHHHHHHHHccCCCCCcchHHHHHHHhhcCChHHHHHHHHHhhhCCCccCCccceeeeCCeeeeeccccCCCchHHHHH
Q 007808 482 LAELALERLTELEPKNPANFVMLSNIYGDLGRWKDVARIKVAMRDTGFKKLPGCSSIEVNEVVMLGCLSRELDRKSIVRA 561 (589)
Q Consensus 482 ~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~ 561 (589)
.|++.|+++++.+|+++..+..++.+|...|++++|+..+++.. +++|+++.++..
T Consensus 3 ~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al------------------------~~~p~~~~~~~~ 58 (115)
T 2kat_A 3 AITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAAL------------------------DFDPTYSVAWKW 58 (115)
T ss_dssp CHHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH------------------------HHCTTCHHHHHH
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHH------------------------HHCCCcHHHHHH
Confidence 57889999999999999999999999999999999999999986 788999999999
Q ss_pred HHHHHHHcccCCCCcchHhhh
Q 007808 562 EANMIKLLPQNNHPLTFIVVI 582 (589)
Q Consensus 562 l~~~~~~~~~~~~~~~~~~~~ 582 (589)
+|.+|..+|+.++|+..+...
T Consensus 59 la~~~~~~g~~~~A~~~~~~a 79 (115)
T 2kat_A 59 LGKTLQGQGDRAGARQAWESG 79 (115)
T ss_dssp HHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHH
Confidence 999999999999888877654
No 204
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=98.14 E-value=3.3e-07 Score=74.33 Aligned_cols=81 Identities=10% Similarity=0.054 Sum_probs=70.2
Q ss_pred cCCCHHHHHHHHHHHHccCCCCCcchHHHHHHHhhcCCh----------HHHHHHHHHhhhCCCccCCccceeeeCCeee
Q 007808 476 VYKNVELAELALERLTELEPKNPANFVMLSNIYGDLGRW----------KDVARIKVAMRDTGFKKLPGCSSIEVNEVVM 545 (589)
Q Consensus 476 ~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~----------~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 545 (589)
+.+.+++|.+.++++++++|+++..|..++.++...|++ ++|+..+++..
T Consensus 14 r~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL-------------------- 73 (158)
T 1zu2_A 14 RILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEAL-------------------- 73 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHH--------------------
T ss_pred HHhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHH--------------------
Confidence 456789999999999999999999999999999999876 48888888875
Q ss_pred eeccccCCCchHHHHHHHHHHHHcc-----------cCCCCcchHh
Q 007808 546 LGCLSRELDRKSIVRAEANMIKLLP-----------QNNHPLTFIV 580 (589)
Q Consensus 546 ~~~~~~~p~~~~~~~~l~~~~~~~~-----------~~~~~~~~~~ 580 (589)
+++|+++.++..||++|..+| +.++|+.+..
T Consensus 74 ----~ldP~~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~ 115 (158)
T 1zu2_A 74 ----LIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQ 115 (158)
T ss_dssp ----HHCTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_pred ----HhCcCcHHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHH
Confidence 899999999999999999886 5666665543
No 205
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=98.10 E-value=9.4e-06 Score=59.92 Aligned_cols=81 Identities=20% Similarity=0.276 Sum_probs=68.4
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHhhC-CCCC-CHHHHHHHHHHHhcCCCHHHHHHHHHHHHccCCCCCcchHHHHHHHh
Q 007808 432 IEHYGCMVDLLARAGRLAEAVDFVKRM-PIEA-DAVIWANLLGSCRVYKNVELAELALERLTELEPKNPANFVMLSNIYG 509 (589)
Q Consensus 432 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 509 (589)
...+..+...+...|++++|+..+++. ...| +...+..+..++...|++++|...++++++++|+++.++..++.++.
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~ 88 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQ 88 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 456777888888889999999888877 2333 56778888899999999999999999999999999999999999987
Q ss_pred hcC
Q 007808 510 DLG 512 (589)
Q Consensus 510 ~~g 512 (589)
+.|
T Consensus 89 ~~g 91 (91)
T 1na3_A 89 KQG 91 (91)
T ss_dssp HHC
T ss_pred hcC
Confidence 765
No 206
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=98.04 E-value=2.7e-06 Score=80.51 Aligned_cols=411 Identities=9% Similarity=0.057 Sum_probs=234.1
Q ss_pred hHHHhHHHHHHHcCCChHHHHHHHccCCCCCeehHHHHHHHHHhCCCHHHHHHHHHhCCCC--ChhHHHHHHHHHhcCCC
Q 007808 135 IFVGTALIELYSTGKAIEAAYKVFGEMDERNVVVWTSMINGYISCGDIVSARCLFELAPER--DVILWNTIVSGYIDVRN 212 (589)
Q Consensus 135 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--~~~~~~~l~~~~~~~g~ 212 (589)
+.+|..|..+....+.+.+|++-|-+ ..|+..|..+|.+..+.|.+++-.+.+...++. ++..=+.|+-+|++.++
T Consensus 54 p~VWs~LgkAqL~~~~v~eAIdsyIk--A~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~ke~~IDteLi~ayAk~~r 131 (624)
T 3lvg_A 54 PAVWSQLAKAQLQKGMVKEAIDSYIK--ADDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVETELIFALAKTNR 131 (624)
T ss_dssp CCCSSSHHHHTTTSSSCTTTTTSSCC--CSCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTCCSTTTTHHHHHHHHTSCS
T ss_pred ccHHHHHHHHHHccCchHHHHHHHHh--CCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccHHHHHHHHHhhCc
Confidence 45666777777777777766655532 345566777777777778887777777766643 55555677778888887
Q ss_pred hHHHHHHhcccCCCChhhHHHHHHHHHhcCCHHHHHHHHhhCCC------------------------CCchhHHHHHHH
Q 007808 213 MIEARKLFDQMPKKDVISWNTMLSGYANNGDVEECKRLFEEMPE------------------------RNVFSWNGLIGG 268 (589)
Q Consensus 213 ~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~------------------------~~~~~~~~l~~~ 268 (589)
..+-.+++.. ||..-...+.+-|...|.++.|.-+|..+.. .++.+|..+-.+
T Consensus 132 L~elEefl~~---~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAns~ktWKeV~~A 208 (624)
T 3lvg_A 132 LAELEEFING---PNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVCFA 208 (624)
T ss_dssp SSTTTSTTSC---CSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCSSCSHHHHTHH
T ss_pred HHHHHHHHcC---CCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHH
Confidence 6664444332 6666666777777777888777777766642 367788888888
Q ss_pred HHhCCChHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHH
Q 007808 269 YANNGLFFEVLDAFKRMLTEGRVFPNDATIVTVLSACARLGALDFSKWVHVYAEYNGYQGNVCVGNALIDMYAKCGIIEN 348 (589)
Q Consensus 269 ~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 348 (589)
|...+++.-|.-.--.++-. || .+..++..|...|-+++-..+++..... -.....+|+-|.-.|++- +.++
T Consensus 209 Cvd~~EfrLAqicGLniIvh----ad--eL~elv~~YE~~G~f~ELIsLlEaglgl-ErAHmGmFTELaILYsKY-~PeK 280 (624)
T 3lvg_A 209 CVDGKEFRLAQMCGLHIVVH----AD--ELEELINYYQDRGYFEELITMLEAALGL-ERAHMGMFTELAILYSKF-KPQK 280 (624)
T ss_dssp HHHSCTTTTTTHHHHHHHCC----SS--CCSGGGSSSSTTCCCTTSTTTHHHHTTS-TTCCHHHHHHHHHHHHSS-CTTH
T ss_pred HhCchHHHHHHHhcchhccc----HH--HHHHHHHHHHhCCCHHHHHHHHHHHhCC-CchhHHHHHHHHHHHHhc-CHHH
Confidence 88888887765544333322 22 1223556677888888888877776632 245677888888888775 5566
Q ss_pred HHHHHhhCCC----C-------CcchHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCcHHHHHH
Q 007808 349 AVDVFNSMDT----K-------DLITWNTIISGLAMHGRGAGALSLFHEMKNAGEMPDGITFIGILCACTHMGLVEEGLS 417 (589)
Q Consensus 349 A~~~~~~~~~----~-------~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~ 417 (589)
..+-++.... | ....|.-++-.|.+-.+++.|... |.++ +|+...-...-....+..+.+---+
T Consensus 281 lmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~lt---Mi~h--~~~Aw~h~~Fkdii~KVaN~EiyYK 355 (624)
T 3lvg_A 281 MREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIIT---MMNH--PTDAWKEGQFKDIITKVANVELYYR 355 (624)
T ss_dssp HHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHHHT---TTSC--HHHHCCGGGGTTTGGGCSCSHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHHHH---HHhC--ChhhccHHHHHHHHHHcchHHHHHH
Confidence 6666554442 2 446788898899988888877543 2221 1111111111112222233222111
Q ss_pred HHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHhhC-------------CCCCCHHHHHHHHHHHhcCCCHHHHH
Q 007808 418 YFQSMAMDYSIVPQIEHYGCMVDLLARAGRLAEAVDFVKRM-------------PIEADAVIWANLLGSCRVYKNVELAE 484 (589)
Q Consensus 418 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-------------~~~p~~~~~~~l~~~~~~~g~~~~A~ 484 (589)
.+.-.++ ..|.. .+-|+..+...=+..++.++|++. ....+...-.++-..|....|++.-.
T Consensus 356 Ai~FYL~---e~P~l--L~DLL~vL~prlDh~RvV~~~~k~~~LpLIkpYL~~Vq~~N~~aVNeAln~L~IEEEDy~~LR 430 (624)
T 3lvg_A 356 AIQFYLE---FKPLL--LNDLLMVLSPRLDHTRAVNYFSKVKQLPLVKPYLRSVQNHNNKSVNESLNNLFITEEDYQALR 430 (624)
T ss_dssp HHHHHTT---SCCTT--SHHHHHHHCTTCCSTTTHHHHHTTTCGGGGTGGGTSCCCSCCHHHHHHHHHHHHHTTCCHHHH
T ss_pred HHHHHHH---hChHH--HHHHHHhccccCChHHHHHHHHhcCCchhhHHHHHHHHHhhHHHHHHHHHHHHhhhhhHHHHH
Confidence 1111111 12332 333444444444555555555554 22223344444556677777776433
Q ss_pred HHHHH-----------HHccCCCCCcchHHHHHHHhhcCChHHHHHHHHHhhhCCCccCCccceeeeCCeeeeeccccCC
Q 007808 485 LALER-----------LTELEPKNPANFVMLSNIYGDLGRWKDVARIKVAMRDTGFKKLPGCSSIEVNEVVMLGCLSREL 553 (589)
Q Consensus 485 ~~~~~-----------~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 553 (589)
...+. -++..+- .+....-+.+|.+.++|++++++.++ .++-+|. +.- .-..
T Consensus 431 ~SId~ydNFD~i~LA~rLEkHeL-~eFRrIAA~LYkkn~rw~qsi~l~Kk---DklykDA----------iet---Aa~S 493 (624)
T 3lvg_A 431 TSIDAYDNFDNISLAQRLEKHEL-IEFRRIAAYLFKGNNRWKQSVELCKK---DSLYKDA----------MQY---ASES 493 (624)
T ss_dssp HTTSSCCCSCTTHHHHHHHTCSS-HHHHHHHHHHHHTTCHHHHHSSCSST---TCCTTGG----------GTT---TTTC
T ss_pred HHHHHhccccHHHHHHHHhhCch-HHHHHHHHHHHHhcccHHHHHHHHHh---cccHHHH----------HHH---HHHc
Confidence 21111 0111121 44555667778889999999886332 2222221 000 1223
Q ss_pred CchHHHHHHHHHHHHcccCCCCcchHhhhhhcccC
Q 007808 554 DRKSIVRAEANMIKLLPQNNHPLTFIVVIFSTFAS 588 (589)
Q Consensus 554 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 588 (589)
.++++.+.|-+-+-+.|+. .-|...|+.|||=
T Consensus 494 ~~~elaeeLL~yFv~~g~~---EcF~a~LytCYdL 525 (624)
T 3lvg_A 494 KDTELAEELLQWFLQEEKR---ECFGACLFTCYDL 525 (624)
T ss_dssp CCTTHHHHHHHHHHHHCST---HHHHHHHHHTSSS
T ss_pred CCHHHHHHHHHHHHHcCch---HHHHHHHHHHhhc
Confidence 4455555444444455554 3488888888863
No 207
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=98.02 E-value=4.2e-05 Score=56.42 Aligned_cols=68 Identities=21% Similarity=0.158 Sum_probs=58.0
Q ss_pred CCCHHHHHHHHHHHhcCCC---HHHHHHHHHHHHccCCCCCcchHHHHHHHhhcCChHHHHHHHHHhhhCC
Q 007808 461 EADAVIWANLLGSCRVYKN---VELAELALERLTELEPKNPANFVMLSNIYGDLGRWKDVARIKVAMRDTG 528 (589)
Q Consensus 461 ~p~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 528 (589)
+++...+..+..++...++ .++|..+++++++++|+++.++..++..+.+.|++++|+..|+++.+..
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~ 73 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSN 73 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCC
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 3466777777777654444 7999999999999999999999999999999999999999999997433
No 208
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.97 E-value=5.5e-06 Score=82.17 Aligned_cols=124 Identities=10% Similarity=-0.040 Sum_probs=91.3
Q ss_pred HHHHhcCCHHHHHHHHhhC---------CCCCC-HHHHHHHHHHHhcCCCHHHHHHHHHHHHc-----cCCCCCc---ch
Q 007808 440 DLLARAGRLAEAVDFVKRM---------PIEAD-AVIWANLLGSCRVYKNVELAELALERLTE-----LEPKNPA---NF 501 (589)
Q Consensus 440 ~~~~~~g~~~~A~~~~~~~---------~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~p~~~~---~~ 501 (589)
..+...|++++|+.++++. +..|+ ..+++.+..+|..+|++++|+.+++++++ +.|++|. .+
T Consensus 317 ~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l 396 (490)
T 3n71_A 317 DKARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAV 396 (490)
T ss_dssp HHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHH
T ss_pred HHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHH
Confidence 3466889999999888765 12333 46788889999999999999999999987 4566654 68
Q ss_pred HHHHHHHhhcCChHHHHHHHHHhhhCCCccCCccceeeeCCeeeeeccccCCCchHHHHHHHHHHHHcccCCCCcchH
Q 007808 502 VMLSNIYGDLGRWKDVARIKVAMRDTGFKKLPGCSSIEVNEVVMLGCLSRELDRKSIVRAEANMIKLLPQNNHPLTFI 579 (589)
Q Consensus 502 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~ 579 (589)
+.|+.+|...|++++|+.++++..+--.. ..| ..||+-..+...|+..+.++|+..+|....
T Consensus 397 ~nLa~~~~~~G~~~eA~~~~~~Al~i~~~-~lG---------------~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~ 458 (490)
T 3n71_A 397 MRAGLTNWHAGHIEVGHGMICKAYAILLV-THG---------------PSHPITKDLEAMRMQTEMELRMFRQNEFMY 458 (490)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHH-HTC---------------TTSHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHH-HhC---------------CCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88999999999999999999988521100 000 345555566667888888888765554443
No 209
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.90 E-value=7.5e-05 Score=60.22 Aligned_cols=89 Identities=8% Similarity=-0.061 Sum_probs=51.3
Q ss_pred HHHHHHhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHhc----CCCHHHHHHHHHHHHccCCCCCcchHHHHHHHhh---
Q 007808 438 MVDLLARAGRLAEAVDFVKRMPIEADAVIWANLLGSCRV----YKNVELAELALERLTELEPKNPANFVMLSNIYGD--- 510 (589)
Q Consensus 438 l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~--- 510 (589)
|...|...+..++|++.|++.-...+...+..+...|.. .+++++|.+.|+++.+. .++.++..|+.+|..
T Consensus 31 lg~~y~~g~~~~~A~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g 108 (138)
T 1klx_A 31 LSLVSNSQINKQKLFQYLSKACELNSGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGL--NDQDGCLILGYKQYAGKG 108 (138)
T ss_dssp HHHHTCTTSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSS
T ss_pred HHHHHHcCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHcC--CCHHHHHHHHHHHHCCCC
Confidence 444444445555555555554222344445555555544 56666666666666655 335666677777766
Q ss_pred -cCChHHHHHHHHHhhhCC
Q 007808 511 -LGRWKDVARIKVAMRDTG 528 (589)
Q Consensus 511 -~g~~~~A~~~~~~~~~~~ 528 (589)
.+++++|.+++++..+.|
T Consensus 109 ~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 109 VVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp SCCCHHHHHHHHHHHHHTT
T ss_pred CCcCHHHHHHHHHHHHHCC
Confidence 667777777777665443
No 210
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=97.88 E-value=3.9e-05 Score=61.39 Aligned_cols=88 Identities=10% Similarity=0.004 Sum_probs=71.0
Q ss_pred CCCHHHHHHHHHHHhcCC---CHHHHHHHHHHHHccC-C-CCCcchHHHHHHHhhcCChHHHHHHHHHhhhCCCccCCcc
Q 007808 461 EADAVIWANLLGSCRVYK---NVELAELALERLTELE-P-KNPANFVMLSNIYGDLGRWKDVARIKVAMRDTGFKKLPGC 535 (589)
Q Consensus 461 ~p~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~-p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 535 (589)
.++..+.-.+..++.+++ +.++++.+++.+++.+ | ++..+++.|+-.|.+.|++++|.++++.+.
T Consensus 29 ~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL---------- 98 (152)
T 1pc2_A 29 SVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLL---------- 98 (152)
T ss_dssp CCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHH----------
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHHHHHHH----------
Confidence 457777777778888887 6668888898888887 6 457888888999999999999999988885
Q ss_pred ceeeeCCeeeeeccccCCCchHHHHHHHHHHHHcccC
Q 007808 536 SSIEVNEVVMLGCLSRELDRKSIVRAEANMIKLLPQN 572 (589)
Q Consensus 536 ~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~ 572 (589)
+.+|+|..+..+..-+-.++.+.
T Consensus 99 --------------~ieP~n~QA~~Lk~~ie~~~~kd 121 (152)
T 1pc2_A 99 --------------QTEPQNNQAKELERLIDKAMKKD 121 (152)
T ss_dssp --------------HHCTTCHHHHHHHHHHHHHHHHT
T ss_pred --------------hcCCCCHHHHHHHHHHHHHHHHh
Confidence 78899988888877777666554
No 211
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.86 E-value=6.4e-06 Score=62.28 Aligned_cols=65 Identities=8% Similarity=0.023 Sum_probs=58.0
Q ss_pred cCCCCCcchHHHHHHHhhcCChHHHHHHHHHhhhCCCccCCccceeeeCCeeeeeccccCCCchHHHHHHHHHHHHcccC
Q 007808 493 LEPKNPANFVMLSNIYGDLGRWKDVARIKVAMRDTGFKKLPGCSSIEVNEVVMLGCLSRELDRKSIVRAEANMIKLLPQN 572 (589)
Q Consensus 493 ~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~ 572 (589)
.+|+++.++..++.+|.+.|++++|++.++++. +++|+++.++..+|.+|..+|+.
T Consensus 2 ~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al------------------------~~~p~~~~a~~~lg~~~~~~g~~ 57 (100)
T 3ma5_A 2 EDPEDPFTRYALAQEHLKHDNASRALALFEELV------------------------ETDPDYVGTYYHLGKLYERLDRT 57 (100)
T ss_dssp ---CCHHHHHHHHHHHHHTTCHHHHHHHHHHHH------------------------HHSTTCTHHHHHHHHHHHHTTCH
T ss_pred CCccCHHHHHHHHHHHHHcCCHHHHHHHHHHHH------------------------HhCCCcHHHHHHHHHHHHHcCCH
Confidence 468999999999999999999999999999986 78999999999999999999999
Q ss_pred CCCcchHhh
Q 007808 573 NHPLTFIVV 581 (589)
Q Consensus 573 ~~~~~~~~~ 581 (589)
++|+..+..
T Consensus 58 ~~A~~~~~~ 66 (100)
T 3ma5_A 58 DDAIDTYAQ 66 (100)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 998877654
No 212
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=97.75 E-value=7.6e-05 Score=72.73 Aligned_cols=103 Identities=10% Similarity=0.033 Sum_probs=76.7
Q ss_pred hcCCHHHHHHHHhhC---------CCCCC-HHHHHHHHHHHhcCCCHHHHHHHHHHHHc-----cCCCCCc---chHHHH
Q 007808 444 RAGRLAEAVDFVKRM---------PIEAD-AVIWANLLGSCRVYKNVELAELALERLTE-----LEPKNPA---NFVMLS 505 (589)
Q Consensus 444 ~~g~~~~A~~~~~~~---------~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~p~~~~---~~~~l~ 505 (589)
..|++++|+.++++. +..|+ ..+++.+..+|..+|++++|+.+++++++ +.|++|. .++.|+
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 346677777776654 12333 36688888999999999999999999987 4566654 688999
Q ss_pred HHHhhcCChHHHHHHHHHhhhCCCccCCccceeeeCCeeeeeccccCCCchHHHHHHHHH
Q 007808 506 NIYGDLGRWKDVARIKVAMRDTGFKKLPGCSSIEVNEVVMLGCLSRELDRKSIVRAEANM 565 (589)
Q Consensus 506 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~ 565 (589)
.+|...|++++|+.++++..+-- -..+.|++|.+.+...++
T Consensus 390 ~~~~~qg~~~eA~~~~~~Al~i~-------------------~~~lG~~Hp~~~~l~~~l 430 (433)
T 3qww_A 390 RLYMGLENKAAGEKALKKAIAIM-------------------EVAHGKDHPYISEIKQEI 430 (433)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHH-------------------HHHTCTTCHHHHHHHHHH
T ss_pred HHHHhccCHHHHHHHHHHHHHHH-------------------HHHcCCCChHHHHHHHHH
Confidence 99999999999999999885211 114678888888766554
No 213
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=97.75 E-value=5.3e-05 Score=71.89 Aligned_cols=234 Identities=12% Similarity=0.088 Sum_probs=161.2
Q ss_pred CccchHHHHHHHHccCChhHHHHHhhcCCCCCcccHHHHHHHHHcCCChhHHHHHHHHhhhCCCCCCcccHHHHHHHHhc
Q 007808 33 SDYITPRIITACAQLKQMTYARKMFDKITDQNVVSWNAMFNGYAQNEFHRTVVVLFTQMKKLDAMPNCFTFPIVLKSCVK 112 (589)
Q Consensus 33 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~ 112 (589)
.+.+|+.|..+..+.+++.+|++-|= +..|+..|..++.+..+.|.+++-++.+...++..- ++..=+.|+-+|++
T Consensus 53 ~p~VWs~LgkAqL~~~~v~eAIdsyI--kA~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~k--e~~IDteLi~ayAk 128 (624)
T 3lvg_A 53 EPAVWSQLAKAQLQKGMVKEAIDSYI--KADDPSSYMEVVQAANTSGNWEELVKYLQMARKKAR--ESYVETELIFALAK 128 (624)
T ss_dssp CCCCSSSHHHHTTTSSSCTTTTTSSC--CCSCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTCC--STTTTHHHHHHHHT
T ss_pred CccHHHHHHHHHHccCchHHHHHHHH--hCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhc--ccccHHHHHHHHHh
Confidence 45778889999998999988888763 345777789999999999999999999977766533 33444678888998
Q ss_pred cCChHHHHHHHHHHHHhCCCCchHHHhHHHHHHHcCCChHHHHHHHccCCC------------------------CCeeh
Q 007808 113 INALREGEELHCLVLKNGFRANIFVGTALIELYSTGKAIEAAYKVFGEMDE------------------------RNVVV 168 (589)
Q Consensus 113 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~------------------------~~~~~ 168 (589)
.++..+-++.+ -.||..-...+.+-|...|.++.|.-+|..+.. .++.+
T Consensus 129 ~~rL~elEefl-------~~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAns~kt 201 (624)
T 3lvg_A 129 TNRLAELEEFI-------NGPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTRT 201 (624)
T ss_dssp SCSSSTTTSTT-------SCCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCSSCS
T ss_pred hCcHHHHHHHH-------cCCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCChhH
Confidence 88876654432 235555556666677777777777777766542 36678
Q ss_pred HHHHHHHHHhCCCHHHHHHHH-HhCCCCChhHHHHHHHHHhcCCChHHHHHHhcccCC---CChhhHHHHHHHHHhcCCH
Q 007808 169 WTSMINGYISCGDIVSARCLF-ELAPERDVILWNTIVSGYIDVRNMIEARKLFDQMPK---KDVISWNTMLSGYANNGDV 244 (589)
Q Consensus 169 ~~~l~~~~~~~g~~~~a~~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~ 244 (589)
|..+..+|...+++.-|.-.- .-+..+|. ...++..|-..|.+++-+.+++.... .....|+.|.-.|+|- +.
T Consensus 202 WKeV~~ACvd~~EfrLAqicGLniIvhade--L~elv~~YE~~G~f~ELIsLlEaglglErAHmGmFTELaILYsKY-~P 278 (624)
T 3lvg_A 202 WKEVCFACVDGKEFRLAQMCGLHIVVHADE--LEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKF-KP 278 (624)
T ss_dssp HHHHTHHHHHSCTTTTTTHHHHHHHCCSSC--CSGGGSSSSTTCCCTTSTTTHHHHTTSTTCCHHHHHHHHHHHHSS-CT
T ss_pred HHHHHHHHhCchHHHHHHHhcchhcccHHH--HHHHHHHHHhCCCHHHHHHHHHHHhCCCchhHHHHHHHHHHHHhc-CH
Confidence 888888888888776553321 22222211 12345557778888888888877663 5566788887777765 45
Q ss_pred HHHHHHHhhCCC-----------CCchhHHHHHHHHHhCCChHHHHH
Q 007808 245 EECKRLFEEMPE-----------RNVFSWNGLIGGYANNGLFFEVLD 280 (589)
Q Consensus 245 ~~A~~~~~~~~~-----------~~~~~~~~l~~~~~~~g~~~~A~~ 280 (589)
++..+.++..-. .....|..++-.|.+-.+++.|..
T Consensus 279 eKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~l 325 (624)
T 3lvg_A 279 QKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAII 325 (624)
T ss_dssp THHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHHH
Confidence 555555554432 244578888888888888887764
No 214
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.74 E-value=0.00037 Score=56.05 Aligned_cols=112 Identities=12% Similarity=-0.037 Sum_probs=91.5
Q ss_pred CChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHh----cCCHHH
Q 007808 375 GRGAGALSLFHEMKNAGEMPDGITFIGILCACTHMGLVEEGLSYFQSMAMDYSIVPQIEHYGCMVDLLAR----AGRLAE 450 (589)
Q Consensus 375 ~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~ 450 (589)
+++++|+++|++..+.| .|+.. +...|...+.+++|.++|++..+. -++..+..|...|.. .+++++
T Consensus 9 ~d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~----g~~~a~~~Lg~~y~~G~g~~~d~~~ 79 (138)
T 1klx_A 9 KDLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACEL----NSGNGCRFLGDFYENGKYVKKDLRK 79 (138)
T ss_dssp HHHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHCSSSCCCHHH
T ss_pred cCHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcC----CCHHHHHHHHHHHHcCCCCCccHHH
Confidence 46789999999999987 44443 777777888889999999998653 567778888888988 889999
Q ss_pred HHHHHhhCCCCCCHHHHHHHHHHHhc----CCCHHHHHHHHHHHHccCC
Q 007808 451 AVDFVKRMPIEADAVIWANLLGSCRV----YKNVELAELALERLTELEP 495 (589)
Q Consensus 451 A~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~p 495 (589)
|++.|++.-..-+...+..+...|.. .++.++|.+.|+++.+...
T Consensus 80 A~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~ 128 (138)
T 1klx_A 80 AAQYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS 128 (138)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCCC
Confidence 99999988434567778888888887 8999999999999998754
No 215
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=97.65 E-value=3e-05 Score=58.32 Aligned_cols=79 Identities=15% Similarity=0.127 Sum_probs=59.2
Q ss_pred HHHHHHhcCCHHHHHHHHhhC-CCCC-CHH-HHHHHHHHHhcCCCHHHHHHHHHHHHccCCCCCcchHHHHHHHhhcCCh
Q 007808 438 MVDLLARAGRLAEAVDFVKRM-PIEA-DAV-IWANLLGSCRVYKNVELAELALERLTELEPKNPANFVMLSNIYGDLGRW 514 (589)
Q Consensus 438 l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 514 (589)
.+..+.+.|++++|++.++++ ...| +.. .+..+..++...|++++|++.|+++++++|+++.++.. +.+
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~--------~~~ 77 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQAR--------KMV 77 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHH--------HHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHH--------HHH
Confidence 456677888888888888877 3344 456 77777888888999999999999999999987766532 556
Q ss_pred HHHHHHHHHh
Q 007808 515 KDVARIKVAM 524 (589)
Q Consensus 515 ~~A~~~~~~~ 524 (589)
.++...+++.
T Consensus 78 ~~a~~~~~~~ 87 (99)
T 2kc7_A 78 MDILNFYNKD 87 (99)
T ss_dssp HHHHHHHCCT
T ss_pred HHHHHHHHHH
Confidence 6666666655
No 216
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=97.63 E-value=0.00034 Score=68.28 Aligned_cols=87 Identities=9% Similarity=0.095 Sum_probs=69.8
Q ss_pred HHHHHhcCCHHHHHHHHhhC-C-----CCCC----HHHHHHHHHHHhcCCCHHHHHHHHHHHHc-----cCCCCCc---c
Q 007808 439 VDLLARAGRLAEAVDFVKRM-P-----IEAD----AVIWANLLGSCRVYKNVELAELALERLTE-----LEPKNPA---N 500 (589)
Q Consensus 439 ~~~~~~~g~~~~A~~~~~~~-~-----~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~p~~~~---~ 500 (589)
+..+.+.|++++|++++++. . ..|+ ..+++.+..+|..+|++++|+.+++++++ +.|++|. .
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~ 373 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ 373 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence 44466788999998888765 1 2232 35678888999999999999999999987 4566554 6
Q ss_pred hHHHHHHHhhcCChHHHHHHHHHhh
Q 007808 501 FVMLSNIYGDLGRWKDVARIKVAMR 525 (589)
Q Consensus 501 ~~~l~~~~~~~g~~~~A~~~~~~~~ 525 (589)
++.|+.+|...|++++|+.+++++.
T Consensus 374 l~nLa~~~~~~g~~~eA~~~~~~Al 398 (429)
T 3qwp_A 374 VMKVGKLQLHQGMFPQAMKNLRLAF 398 (429)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 8899999999999999999999885
No 217
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=97.58 E-value=0.00024 Score=53.85 Aligned_cols=83 Identities=10% Similarity=-0.061 Sum_probs=68.7
Q ss_pred CHHHHHHHHHHHhcCCCHHHHHHHHHHHHccC-------CCCCcchHHHHHHHhhcCChHHHHHHHHHhhhCCCccCCcc
Q 007808 463 DAVIWANLLGSCRVYKNVELAELALERLTELE-------PKNPANFVMLSNIYGDLGRWKDVARIKVAMRDTGFKKLPGC 535 (589)
Q Consensus 463 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 535 (589)
+...+..+...+.+.|++..|..-|+++++.. +..+.++..|+.+|.+.|++++|+.+++++.
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al---------- 73 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLL---------- 73 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHH----------
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHH----------
Confidence 44556677888899999999999999998842 2345689999999999999999999999986
Q ss_pred ceeeeCCeeeeeccccCCCchHHHHHHHHHHHHc
Q 007808 536 SSIEVNEVVMLGCLSRELDRKSIVRAEANMIKLL 569 (589)
Q Consensus 536 ~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 569 (589)
+++|+++.+..+++++-..+
T Consensus 74 --------------~l~P~~~~~~~n~~~~~~~~ 93 (104)
T 2v5f_A 74 --------------ELDPEHQRANGNLKYFEYIM 93 (104)
T ss_dssp --------------HHCTTCHHHHHHHHHHHHHH
T ss_pred --------------hcCCCCHHHHhhHHHHHHHH
Confidence 78999999999988555433
No 218
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=97.43 E-value=0.0011 Score=61.91 Aligned_cols=64 Identities=19% Similarity=0.158 Sum_probs=51.0
Q ss_pred CCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHccCCCCCcchHHHHHHHhhcCChHHHHHHHHHhh
Q 007808 461 EADAVIWANLLGSCRVYKNVELAELALERLTELEPKNPANFVMLSNIYGDLGRWKDVARIKVAMR 525 (589)
Q Consensus 461 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 525 (589)
+.+...+..+...+...|++++|...++++++++|+ ...|..++.++.-.|++++|++.+++..
T Consensus 274 ~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s-~~a~~llG~~~~~~G~~~eA~e~~~~Al 337 (372)
T 3ly7_A 274 NNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMS-WLNYVLLGKVYEMKGMNREAADAYLTAF 337 (372)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 346677777766666678999999999999988875 6677788888888999999998888775
No 219
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=97.41 E-value=0.0033 Score=58.68 Aligned_cols=138 Identities=11% Similarity=-0.035 Sum_probs=91.6
Q ss_pred CCcchHHHHHHHHH--hCC---ChHHHHHHHHHHHHCCCCCC-HhHHHHHHHHHhc---cC-----cHHHHHHHHHHhHH
Q 007808 359 KDLITWNTIISGLA--MHG---RGAGALSLFHEMKNAGEMPD-GITFIGILCACTH---MG-----LVEEGLSYFQSMAM 424 (589)
Q Consensus 359 ~~~~~~~~l~~~~~--~~~---~~~~A~~~~~~m~~~~~~p~-~~~~~~l~~~~~~---~g-----~~~~A~~~~~~~~~ 424 (589)
.+...|...+.+.. ..+ +..+|..+|++..+ ..|+ ...+..+..+|.. .+ ........++....
T Consensus 192 ~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~--lDP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a 269 (372)
T 3ly7_A 192 HRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQ--SSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVT 269 (372)
T ss_dssp SSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHh
Confidence 35666666665533 233 34678889998888 4675 3444444433321 01 11111112222111
Q ss_pred hcCCCCChHHHHHHHHHHHhcCCHHHHHHHHhhC-CCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHccCCCCC
Q 007808 425 DYSIVPQIEHYGCMVDLLARAGRLAEAVDFVKRM-PIEADAVIWANLLGSCRVYKNVELAELALERLTELEPKNP 498 (589)
Q Consensus 425 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~ 498 (589)
....+.++.+|..+...+...|++++|...++++ ...|+...|..+...+.-.|++++|.+.|++++.++|..+
T Consensus 270 ~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~~ 344 (372)
T 3ly7_A 270 LPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMSWLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGAN 344 (372)
T ss_dssp CGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSHH
T ss_pred cccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcC
Confidence 1123566788888888888889999999999998 4568887787778889999999999999999999999843
No 220
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=97.37 E-value=0.00071 Score=65.89 Aligned_cols=94 Identities=13% Similarity=0.067 Sum_probs=66.1
Q ss_pred ccCcHHHHHHHHHHhHHhc--CCCCC----hHHHHHHHHHHHhcCCHHHHHHHHhhC---------CCCCC-HHHHHHHH
Q 007808 408 HMGLVEEGLSYFQSMAMDY--SIVPQ----IEHYGCMVDLLARAGRLAEAVDFVKRM---------PIEAD-AVIWANLL 471 (589)
Q Consensus 408 ~~g~~~~A~~~~~~~~~~~--~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~---------~~~p~-~~~~~~l~ 471 (589)
..|++++|+.++++.+... -+.|+ ..+++.|+.+|...|++++|+.+++++ +..|+ ..+++.+.
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 3467777777777664421 12222 456778888888888888888877765 13444 35678888
Q ss_pred HHHhcCCCHHHHHHHHHHHHc-----cCCCCCcch
Q 007808 472 GSCRVYKNVELAELALERLTE-----LEPKNPANF 501 (589)
Q Consensus 472 ~~~~~~g~~~~A~~~~~~~~~-----~~p~~~~~~ 501 (589)
..|..+|++++|+.+++++++ +.|++|.+-
T Consensus 390 ~~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~~~ 424 (433)
T 3qww_A 390 RLYMGLENKAAGEKALKKAIAIMEVAHGKDHPYIS 424 (433)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHH
T ss_pred HHHHhccCHHHHHHHHHHHHHHHHHHcCCCChHHH
Confidence 999999999999999999987 567766443
No 221
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=97.36 E-value=0.00069 Score=52.05 Aligned_cols=88 Identities=9% Similarity=-0.030 Sum_probs=65.8
Q ss_pred CCCHHHHHHHHHHHhcCCCHHH---HHHHHHHHHccC-C-CCCcchHHHHHHHhhcCChHHHHHHHHHhhhCCCccCCcc
Q 007808 461 EADAVIWANLLGSCRVYKNVEL---AELALERLTELE-P-KNPANFVMLSNIYGDLGRWKDVARIKVAMRDTGFKKLPGC 535 (589)
Q Consensus 461 ~p~~~~~~~l~~~~~~~g~~~~---A~~~~~~~~~~~-p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 535 (589)
.|+..+--.+.+++.++++... ++.+++.+++.+ | .....++.|+-.+.+.|+|++|.++++.+.
T Consensus 32 ~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL---------- 101 (126)
T 1nzn_A 32 SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLL---------- 101 (126)
T ss_dssp CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH----------
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHHHHHHHH----------
Confidence 3566666667777777776555 778888877766 5 456778888888888888888888888875
Q ss_pred ceeeeCCeeeeeccccCCCchHHHHHHHHHHHHcccC
Q 007808 536 SSIEVNEVVMLGCLSRELDRKSIVRAEANMIKLLPQN 572 (589)
Q Consensus 536 ~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~ 572 (589)
+.+|+|..+..+..-+..++.+.
T Consensus 102 --------------~~eP~n~QA~~Lk~~i~~~i~kd 124 (126)
T 1nzn_A 102 --------------QTEPQNNQAKELERLIDKAMKKD 124 (126)
T ss_dssp --------------HHCTTCHHHHHHHHHHHHHHHHC
T ss_pred --------------HhCCCCHHHHHHHHHHHHHHHhc
Confidence 78888888888887777666554
No 222
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=97.31 E-value=0.0014 Score=63.85 Aligned_cols=100 Identities=13% Similarity=-0.031 Sum_probs=72.9
Q ss_pred HHHHhccCcHHHHHHHHHHhHHhc--CCCCC----hHHHHHHHHHHHhcCCHHHHHHHHhhC---------CCCCC-HHH
Q 007808 403 LCACTHMGLVEEGLSYFQSMAMDY--SIVPQ----IEHYGCMVDLLARAGRLAEAVDFVKRM---------PIEAD-AVI 466 (589)
Q Consensus 403 ~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~---------~~~p~-~~~ 466 (589)
+..+.+.|++++|+.++++.+... -+.|+ ..+++.|+.+|...|++++|+.+++++ +..|+ ..+
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~ 373 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ 373 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence 344556688888888888775421 12232 457788888888899999988888765 13343 356
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHc-----cCCCCCcchH
Q 007808 467 WANLLGSCRVYKNVELAELALERLTE-----LEPKNPANFV 502 (589)
Q Consensus 467 ~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~p~~~~~~~ 502 (589)
++.+...|..+|++++|+.+++++++ +.|++|.+-.
T Consensus 374 l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~ 414 (429)
T 3qwp_A 374 VMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIED 414 (429)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHH
Confidence 78888999999999999999999987 5788775443
No 223
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=97.28 E-value=0.2 Score=50.91 Aligned_cols=114 Identities=11% Similarity=-0.003 Sum_probs=62.4
Q ss_pred CChHHHHHHHHHHHHCCCCCCHhH----HHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHH
Q 007808 375 GRGAGALSLFHEMKNAGEMPDGIT----FIGILCACTHMGLVEEGLSYFQSMAMDYSIVPQIEHYGCMVDLLARAGRLAE 450 (589)
Q Consensus 375 ~~~~~A~~~~~~m~~~~~~p~~~~----~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 450 (589)
.+++.|...|....... ..+... ...++......+...++...+...... .++.......+....+.|+++.
T Consensus 228 ~d~~~A~~~~~~~~~~~-~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~e~~~r~Alr~~d~~~ 303 (618)
T 1qsa_A 228 QDAENARLMIPSLAQAQ-QLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMR---SQSTSLIERRVRMALGTGDRRG 303 (618)
T ss_dssp HCHHHHHHHHHHHHHHT-TCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHT---CCCHHHHHHHHHHHHHHTCHHH
T ss_pred cCHHHHHHHHHhhhhcc-CCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhcccc---CCChHHHHHHHHHHHHCCCHHH
Confidence 36777888887776532 222222 222333333444344555555554321 2333333444444556788888
Q ss_pred HHHHHhhCCCCC--CHHHHHHHHHHHhcCCCHHHHHHHHHHHHc
Q 007808 451 AVDFVKRMPIEA--DAVIWANLLGSCRVYKNVELAELALERLTE 492 (589)
Q Consensus 451 A~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 492 (589)
|...|+.|+..+ .....-=+..++...|+.++|..+|+++.+
T Consensus 304 a~~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 304 LNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (618)
T ss_dssp HHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHccccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 888888885332 222222234566677888888888888765
No 224
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=97.27 E-value=0.00075 Score=60.21 Aligned_cols=87 Identities=15% Similarity=0.146 Sum_probs=70.5
Q ss_pred HHHHHHHHhhC-CCCCC---HHHHHHHHHHHhc-----CCCHHHHHHHHHHHHccCCCC-CcchHHHHHHHhhc-CChHH
Q 007808 448 LAEAVDFVKRM-PIEAD---AVIWANLLGSCRV-----YKNVELAELALERLTELEPKN-PANFVMLSNIYGDL-GRWKD 516 (589)
Q Consensus 448 ~~~A~~~~~~~-~~~p~---~~~~~~l~~~~~~-----~g~~~~A~~~~~~~~~~~p~~-~~~~~~l~~~~~~~-g~~~~ 516 (589)
..+|...++++ .+.|+ ...|..+...|.+ .|+.++|.++|+++++++|+. ..++..+++.+++. |+.++
T Consensus 179 l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~ 258 (301)
T 3u64_A 179 VHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAG 258 (301)
T ss_dssp HHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHH
T ss_pred HHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHH
Confidence 35566666666 46776 5567778888877 499999999999999999974 99999999999985 99999
Q ss_pred HHHHHHHhhhCCCccCCc
Q 007808 517 VARIKVAMRDTGFKKLPG 534 (589)
Q Consensus 517 A~~~~~~~~~~~~~~~~~ 534 (589)
|.+++++....+...+|+
T Consensus 259 a~~~L~kAL~a~p~~~P~ 276 (301)
T 3u64_A 259 FDEALDRALAIDPESVPH 276 (301)
T ss_dssp HHHHHHHHHHCCGGGCSS
T ss_pred HHHHHHHHHcCCCCCCCC
Confidence 999999998766654443
No 225
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=97.13 E-value=0.011 Score=45.23 Aligned_cols=142 Identities=10% Similarity=0.051 Sum_probs=101.6
Q ss_pred HHhCCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHH
Q 007808 371 LAMHGRGAGALSLFHEMKNAGEMPDGITFIGILCACTHMGLVEEGLSYFQSMAMDYSIVPQIEHYGCMVDLLARAGRLAE 450 (589)
Q Consensus 371 ~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 450 (589)
+.-.|..++..++..+... ..+..-||.++--....-+-+-..+.++.+-+- .| ...+|+...
T Consensus 17 ~ildG~v~qGveii~k~~~---ssni~E~NW~ICNiiD~a~C~y~v~vLd~IGki----FD----------is~C~NlKr 79 (172)
T 1wy6_A 17 FLLDGYIDEGVKIVLEITK---SSTKSEYNWFICNLLESIDCRYMFQVLDKIGSY----FD----------LDKCQNLKS 79 (172)
T ss_dssp HHHTTCHHHHHHHHHHHHH---HSCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGG----SC----------GGGCSCTHH
T ss_pred HHHhhhHHHHHHHHHHHcC---CCCccccceeeeecchhhchhHHHHHHHHHhhh----cC----------cHhhhcHHH
Confidence 3446777788888777776 234555666665555555556566666655322 22 125666666
Q ss_pred HHHHHhhCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHccCCCCCcchHHHHHHHhhcCChHHHHHHHHHhhhCCCc
Q 007808 451 AVDFVKRMPIEADAVIWANLLGSCRVYKNVELAELALERLTELEPKNPANFVMLSNIYGDLGRWKDVARIKVAMRDTGFK 530 (589)
Q Consensus 451 A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 530 (589)
....+-.+. .+...+...+..+..+|+-++-.+++..++...|.+|+.+..++.+|.+.|+..+|.++++++-+.|++
T Consensus 80 Vi~C~~~~n--~~se~vd~ALd~lv~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~k 157 (172)
T 1wy6_A 80 VVECGVINN--TLNEHVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKKGEK 157 (172)
T ss_dssp HHHHHHHTT--CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHhc--chHHHHHHHHHHHHHhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhhH
Confidence 666666664 345556667788899999999999999977766667999999999999999999999999999988875
Q ss_pred c
Q 007808 531 K 531 (589)
Q Consensus 531 ~ 531 (589)
.
T Consensus 158 E 158 (172)
T 1wy6_A 158 E 158 (172)
T ss_dssp H
T ss_pred H
Confidence 3
No 226
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=97.10 E-value=0.0003 Score=51.77 Aligned_cols=66 Identities=9% Similarity=-0.011 Sum_probs=58.5
Q ss_pred CCCCCcchHHHHHHHhhcCC---hHHHHHHHHHhhhCCCccCCccceeeeCCeeeeeccccCCCchHHHHHHHHHHHHcc
Q 007808 494 EPKNPANFVMLSNIYGDLGR---WKDVARIKVAMRDTGFKKLPGCSSIEVNEVVMLGCLSRELDRKSIVRAEANMIKLLP 570 (589)
Q Consensus 494 ~p~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~ 570 (589)
+|+++..+..++.++...++ .++|..++++.. +++|+++.+...||.++++.|
T Consensus 2 ~p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL------------------------~~dp~~~rA~~~lg~~~~~~g 57 (93)
T 3bee_A 2 NAVTATQLAAKATTLYYLHKQAMTDEVSLLLEQAL------------------------QLEPYNEAALSLIANDHFISF 57 (93)
T ss_dssp CCCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHH------------------------HHCTTCHHHHHHHHHHHHHTT
T ss_pred CCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH------------------------HHCcCCHHHHHHHHHHHHHcC
Confidence 58889999999999976655 799999999986 899999999999999999999
Q ss_pred cCCCCcchHhhhh
Q 007808 571 QNNHPLTFIVVIF 583 (589)
Q Consensus 571 ~~~~~~~~~~~~~ 583 (589)
+..+|+.+...+.
T Consensus 58 ~y~~Ai~~w~~~l 70 (93)
T 3bee_A 58 RFQEAIDTWVLLL 70 (93)
T ss_dssp CHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHH
Confidence 9999998766543
No 227
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=96.94 E-value=0.0075 Score=53.86 Aligned_cols=114 Identities=14% Similarity=0.093 Sum_probs=83.9
Q ss_pred hcCCHHHHHHHHhhCC-CCCCHHHHHHHHHH-Hhc--CC------CHHHHHHHHHHHHccCCC--CCcchHHHHHHHhh-
Q 007808 444 RAGRLAEAVDFVKRMP-IEADAVIWANLLGS-CRV--YK------NVELAELALERLTELEPK--NPANFVMLSNIYGD- 510 (589)
Q Consensus 444 ~~g~~~~A~~~~~~~~-~~p~~~~~~~l~~~-~~~--~g------~~~~A~~~~~~~~~~~p~--~~~~~~~l~~~~~~- 510 (589)
+.++..+-.+.+.++. ..+....|..++.+ +.. .| ....|...++++++++|+ +..+|..|+..|..
T Consensus 133 ~~~~~~~~~~~l~~~~~~dve~L~W~ai~~ss~a~~~~gg~~Al~~l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~v 212 (301)
T 3u64_A 133 FSGDEQRLHKVLSRCTRVDVGTLYWVGTGYVAAFALTPLGSALPDTVHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAA 212 (301)
T ss_dssp TSSCHHHHHHHHTTCCGGGHHHHHHHHHHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHS
T ss_pred HhcchhhHHHHHHHcCccccHHHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhC
Confidence 3444444455555553 23345667776643 322 23 368899999999999999 77899999999999
Q ss_pred ----cCChHHHHHHHHHhhhCCCccCCccceeeeCCeeeeeccccCCCc-hHHHHHHHHHHHH-cccCCCCcchHhh
Q 007808 511 ----LGRWKDVARIKVAMRDTGFKKLPGCSSIEVNEVVMLGCLSRELDR-KSIVRAEANMIKL-LPQNNHPLTFIVV 581 (589)
Q Consensus 511 ----~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~-~~~~~~l~~~~~~-~~~~~~~~~~~~~ 581 (589)
.|+.++|.+.|++.. +++|+. ..++...|+-+.. .|+..++.+++..
T Consensus 213 Pp~~gGd~ekA~~~ferAL------------------------~LnP~~~id~~v~YA~~l~~~~gd~~~a~~~L~k 265 (301)
T 3u64_A 213 PESFGGGMEKAHTAFEHLT------------------------RYCSAHDPDHHITYADALCIPLNNRAGFDEALDR 265 (301)
T ss_dssp CTTTTCCHHHHHHHHHHHH------------------------HHCCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHH
T ss_pred CCccCCCHHHHHHHHHHHH------------------------HhCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 499999999999986 788975 9999999988876 4766666666554
No 228
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.90 E-value=0.096 Score=56.12 Aligned_cols=153 Identities=14% Similarity=0.073 Sum_probs=91.2
Q ss_pred HHHHhCCCHHHHHH-HHHhCCCCChhHHHHHHHHHhcCCChHHHHHHhcccCCCChhhHHHHHHHHHhcCCHHHHHHHHh
Q 007808 174 NGYISCGDIVSARC-LFELAPERDVILWNTIVSGYIDVRNMIEARKLFDQMPKKDVISWNTMLSGYANNGDVEECKRLFE 252 (589)
Q Consensus 174 ~~~~~~g~~~~a~~-~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 252 (589)
......+++++|.+ ++..+. +......++..+.+.|.+++|.++.+. . ..-.......|+++.|.++.+
T Consensus 607 ~~~~~~~~~~~a~~~~l~~i~--~~~~~~~~~~~l~~~~~~~~a~~~~~~-----~---~~~f~~~l~~~~~~~A~~~~~ 676 (814)
T 3mkq_A 607 QTLTLRGEIEEAIENVLPNVE--GKDSLTKIARFLEGQEYYEEALNISPD-----Q---DQKFELALKVGQLTLARDLLT 676 (814)
T ss_dssp HHHHHTTCHHHHHHHTGGGCC--CHHHHHHHHHHHHHTTCHHHHHHHCCC-----H---HHHHHHHHHHTCHHHHHHHHT
T ss_pred hHHHHhCCHHHHHHHHHhcCC--chHHHHHHHHHHHhCCChHHheecCCC-----c---chheehhhhcCCHHHHHHHHH
Confidence 44455677777776 553332 122336666777778888888777642 1 112344566788888888877
Q ss_pred hCCCCCchhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhH
Q 007808 253 EMPERNVFSWNGLIGGYANNGLFFEVLDAFKRMLTEGRVFPNDATIVTVLSACARLGALDFSKWVHVYAEYNGYQGNVCV 332 (589)
Q Consensus 253 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 332 (589)
.+. +...|..+...+.+.|+++.|.+.|..+.. |..+...+...++.+....+-+.+...|.
T Consensus 677 ~~~--~~~~W~~la~~al~~~~~~~A~~~y~~~~d----------~~~l~~l~~~~~~~~~~~~~~~~a~~~~~------ 738 (814)
T 3mkq_A 677 DES--AEMKWRALGDASLQRFNFKLAIEAFTNAHD----------LESLFLLHSSFNNKEGLVTLAKDAETTGK------ 738 (814)
T ss_dssp TCC--CHHHHHHHHHHHHHTTCHHHHHHHHHHHTC----------HHHHHHHHHHTTCHHHHHHHHHHHHHTTC------
T ss_pred hhC--cHhHHHHHHHHHHHcCCHHHHHHHHHHccC----------hhhhHHHHHHcCCHHHHHHHHHHHHHcCc------
Confidence 663 456788888888888888888888887632 22333344445666555554444444331
Q ss_pred HHHHHHHHHhcCChHHHHHHHh
Q 007808 333 GNALIDMYAKCGIIENAVDVFN 354 (589)
Q Consensus 333 ~~~l~~~~~~~g~~~~A~~~~~ 354 (589)
++.-..+|.+.|++++|++++.
T Consensus 739 ~~~A~~~~~~~g~~~~a~~~~~ 760 (814)
T 3mkq_A 739 FNLAFNAYWIAGDIQGAKDLLI 760 (814)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHH
T ss_pred hHHHHHHHHHcCCHHHHHHHHH
Confidence 2223334555666666665543
No 229
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=96.88 E-value=0.014 Score=45.56 Aligned_cols=88 Identities=11% Similarity=0.017 Sum_probs=63.5
Q ss_pred CCCHHHHHHHHHHHhcCCC---HHHHHHHHHHHHccCC-CCCcchHHHHHHHhhcCChHHHHHHHHHhhhCCCccCCccc
Q 007808 461 EADAVIWANLLGSCRVYKN---VELAELALERLTELEP-KNPANFVMLSNIYGDLGRWKDVARIKVAMRDTGFKKLPGCS 536 (589)
Q Consensus 461 ~p~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 536 (589)
.|+..+--.+.+++.++.+ ..+++.+++.+.+..| ...+.++.|+-.+.+.|++++|.++.+.+.
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL----------- 104 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLF----------- 104 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHH-----------
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHH-----------
Confidence 4566665556667666654 4567778888877777 345677778888888888888888888775
Q ss_pred eeeeCCeeeeeccccCCCchHHHHHHHHHHHHcccC
Q 007808 537 SIEVNEVVMLGCLSRELDRKSIVRAEANMIKLLPQN 572 (589)
Q Consensus 537 ~~~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~ 572 (589)
+.+|+|..+..+...+..++.+.
T Consensus 105 -------------~~eP~n~QA~~Lk~~Ie~~i~kd 127 (144)
T 1y8m_A 105 -------------EHERNNKQVGALKSMVEDKIQKE 127 (144)
T ss_dssp -------------HTCCCCHHHHHHHHHHHHHHHHT
T ss_pred -------------hcCCCcHHHHHHHHHHHHHHHHh
Confidence 77888888888877777666554
No 230
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=96.82 E-value=0.0054 Score=46.18 Aligned_cols=71 Identities=11% Similarity=0.022 Sum_probs=50.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhCC---------CCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHccCCCCCcchHHHH
Q 007808 435 YGCMVDLLARAGRLAEAVDFVKRMP---------IEADAVIWANLLGSCRVYKNVELAELALERLTELEPKNPANFVMLS 505 (589)
Q Consensus 435 ~~~l~~~~~~~g~~~~A~~~~~~~~---------~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~ 505 (589)
...|+..+.+.|++..|...++.+. -.+....+..+..++.+.|++++|...++++++++|+++.+..++.
T Consensus 8 c~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~n~~ 87 (104)
T 2v5f_A 8 CFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANGNLK 87 (104)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHhhHH
Confidence 3445555556666666665555441 1234567788889999999999999999999999999877655554
No 231
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=96.70 E-value=0.0035 Score=50.18 Aligned_cols=87 Identities=16% Similarity=0.014 Sum_probs=61.6
Q ss_pred cHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcC---CHHHHHHHHhhC-CCC-C--CHHHHHHHHHHHhcCCCHHHH
Q 007808 411 LVEEGLSYFQSMAMDYSIVPQIEHYGCMVDLLARAG---RLAEAVDFVKRM-PIE-A--DAVIWANLLGSCRVYKNVELA 483 (589)
Q Consensus 411 ~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~-~~~-p--~~~~~~~l~~~~~~~g~~~~A 483 (589)
....+.+.|.+.... + .++..+.-.+..++++.+ +.++++.++++. ... | ....+-.+.-++.+.|++++|
T Consensus 13 ~l~~~~~~y~~e~~~-~-~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A 90 (152)
T 1pc2_A 13 DLLKFEKKFQSEKAA-G-SVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKA 90 (152)
T ss_dssp HHHHHHHHHHHHHHT-T-CCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHH
T ss_pred HHHHHHHHHHHHHcc-C-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHH
Confidence 344555555555432 2 367777777778888877 555788888776 223 5 245555666888999999999
Q ss_pred HHHHHHHHccCCCCCc
Q 007808 484 ELALERLTELEPKNPA 499 (589)
Q Consensus 484 ~~~~~~~~~~~p~~~~ 499 (589)
.++++++++++|+|..
T Consensus 91 ~~y~~~lL~ieP~n~Q 106 (152)
T 1pc2_A 91 LKYVRGLLQTEPQNNQ 106 (152)
T ss_dssp HHHHHHHHHHCTTCHH
T ss_pred HHHHHHHHhcCCCCHH
Confidence 9999999999998663
No 232
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.64 E-value=0.016 Score=62.15 Aligned_cols=98 Identities=13% Similarity=0.090 Sum_probs=55.5
Q ss_pred HhcCChHHHHH-HHhhCCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCcHHHHHHHH
Q 007808 341 AKCGIIENAVD-VFNSMDTKDLITWNTIISGLAMHGRGAGALSLFHEMKNAGEMPDGITFIGILCACTHMGLVEEGLSYF 419 (589)
Q Consensus 341 ~~~g~~~~A~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 419 (589)
...+++++|.+ ++..+.. ......++..+.+.|.+++|+++.+. |. .- .......|+++.|.++.
T Consensus 610 ~~~~~~~~a~~~~l~~i~~--~~~~~~~~~~l~~~~~~~~a~~~~~~-------~~-~~----f~~~l~~~~~~~A~~~~ 675 (814)
T 3mkq_A 610 TLRGEIEEAIENVLPNVEG--KDSLTKIARFLEGQEYYEEALNISPD-------QD-QK----FELALKVGQLTLARDLL 675 (814)
T ss_dssp HHTTCHHHHHHHTGGGCCC--HHHHHHHHHHHHHTTCHHHHHHHCCC-------HH-HH----HHHHHHHTCHHHHHHHH
T ss_pred HHhCCHHHHHHHHHhcCCc--hHHHHHHHHHHHhCCChHHheecCCC-------cc-hh----eehhhhcCCHHHHHHHH
Confidence 34566666666 4433220 11225555566666777766655421 11 11 12234557777777764
Q ss_pred HHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHhhCC
Q 007808 420 QSMAMDYSIVPQIEHYGCMVDLLARAGRLAEAVDFVKRMP 459 (589)
Q Consensus 420 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 459 (589)
+.+ .+...|..+...+.+.|+++.|++.|.+++
T Consensus 676 ~~~-------~~~~~W~~la~~al~~~~~~~A~~~y~~~~ 708 (814)
T 3mkq_A 676 TDE-------SAEMKWRALGDASLQRFNFKLAIEAFTNAH 708 (814)
T ss_dssp TTC-------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred Hhh-------CcHhHHHHHHHHHHHcCCHHHHHHHHHHcc
Confidence 433 455677777777777777777777777764
No 233
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=96.63 E-value=0.0039 Score=47.96 Aligned_cols=88 Identities=11% Similarity=0.007 Sum_probs=68.4
Q ss_pred CCCHHHHHHHHHHHhcCCC---HHHHHHHHHHHHccCCC-CCcchHHHHHHHhhcCChHHHHHHHHHhhhCCCccCCccc
Q 007808 461 EADAVIWANLLGSCRVYKN---VELAELALERLTELEPK-NPANFVMLSNIYGDLGRWKDVARIKVAMRDTGFKKLPGCS 536 (589)
Q Consensus 461 ~p~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 536 (589)
.|+..+--.+.+++.++.+ ..+++.+++.+.+.+|. ..+.+..|+-.+.+.|++++|.++.+.+.
T Consensus 37 ~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL----------- 105 (134)
T 3o48_A 37 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLF----------- 105 (134)
T ss_dssp GSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHH-----------
T ss_pred CCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHH-----------
Confidence 4566665566677766654 45788888888887773 46788889999999999999999988886
Q ss_pred eeeeCCeeeeeccccCCCchHHHHHHHHHHHHcccC
Q 007808 537 SIEVNEVVMLGCLSRELDRKSIVRAEANMIKLLPQN 572 (589)
Q Consensus 537 ~~~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~ 572 (589)
+.+|+|..+..+...|-.++.+.
T Consensus 106 -------------~~eP~N~QA~~Lk~~Ie~ki~kd 128 (134)
T 3o48_A 106 -------------EHERNNKQVGALKSMVEDKIQKE 128 (134)
T ss_dssp -------------TTCTTCHHHHHHHHHHHHHHHHH
T ss_pred -------------hhCCCCHHHHHHHHHHHHHHHhh
Confidence 78899999998888887766543
No 234
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=95.99 E-value=0.045 Score=44.12 Aligned_cols=132 Identities=14% Similarity=0.006 Sum_probs=71.1
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCCh-------HHHHHHHHHHHhcCCHHHHHHHHhhC----CCCC-CHH
Q 007808 398 TFIGILCACTHMGLVEEGLSYFQSMAMDYSIVPQI-------EHYGCMVDLLARAGRLAEAVDFVKRM----PIEA-DAV 465 (589)
Q Consensus 398 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~p-~~~ 465 (589)
++..-+..+...|.++.|+-+...+..-.+..|+. .++..+.+++...|++.+|...|+++ ..-+ ...
T Consensus 22 ~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s 101 (167)
T 3ffl_A 22 NVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSK 101 (167)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC-----
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 34444555666677777776665543322223331 23445566666777777766666653 0001 100
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHccCCCCCcchHHHHHHHhhcCChHHHHHHHHHhhhCCCccCCccceeeeCCeee
Q 007808 466 IWANLLGSCRVYKNVELAELALERLTELEPKNPANFVMLSNIYGDLGRWKDVARIKVAMRDTGFKKLPGCSSIEVNEVVM 545 (589)
Q Consensus 466 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 545 (589)
....+. ....... -..+ +.+.+..+.++.+|.+.|++++|+.+++.+.
T Consensus 102 ~~~~~~----~~ss~p~-------s~~~-~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip-------------------- 149 (167)
T 3ffl_A 102 VRPSTG----NSASTPQ-------SQCL-PSEIEVKYKLAECYTVLKQDKDAIAILDGIP-------------------- 149 (167)
T ss_dssp --------------------------CC-CCHHHHHHHHHHHHHHTTCHHHHHHHHHTSC--------------------
T ss_pred cccccc----ccCCCcc-------cccc-cchHHHHHHHHHHHHHHCCHHHHHHHHhcCC--------------------
Confidence 000000 0000000 0111 2234677889999999999999999988763
Q ss_pred eeccccCCCchHHHHHHHHHH
Q 007808 546 LGCLSRELDRKSIVRAEANMI 566 (589)
Q Consensus 546 ~~~~~~~p~~~~~~~~l~~~~ 566 (589)
..-..+.+...||++|
T Consensus 150 -----~k~Rt~kvnm~LakLy 165 (167)
T 3ffl_A 150 -----SRQRTPKINMLLANLY 165 (167)
T ss_dssp -----GGGCCHHHHHHHHHHC
T ss_pred -----chhcCHHHHHHHHHHh
Confidence 2236688888888887
No 235
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=95.84 E-value=0.32 Score=39.92 Aligned_cols=101 Identities=16% Similarity=0.177 Sum_probs=49.7
Q ss_pred HhcCChHHHHHHHhhCCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCcHHHHHHHHH
Q 007808 341 AKCGIIENAVDVFNSMDTKDLITWNTIISGLAMHGRGAGALSLFHEMKNAGEMPDGITFIGILCACTHMGLVEEGLSYFQ 420 (589)
Q Consensus 341 ~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 420 (589)
...|+++.|.++.+.+ .+...|..|.......|+++-|.+.|++... +..+.-.|...|+.+.-.++-+
T Consensus 16 L~lg~l~~A~e~a~~l--~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L~kla~ 84 (177)
T 3mkq_B 16 LEYGNLDAALDEAKKL--NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKLSKMQN 84 (177)
T ss_dssp HHTTCHHHHHHHHHHH--CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHHHHHHH
T ss_pred HhcCCHHHHHHHHHHh--CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHHHHHHH
Confidence 4455666665555544 2445566666666666666666666654432 2233333444455544444333
Q ss_pred HhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHhhCC
Q 007808 421 SMAMDYSIVPQIEHYGCMVDLLARAGRLAEAVDFVKRMP 459 (589)
Q Consensus 421 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 459 (589)
....+ | -++.-...+.-.|++++++++|.+.+
T Consensus 85 iA~~~-g------~~n~af~~~l~lGdv~~~i~lL~~~~ 116 (177)
T 3mkq_B 85 IAQTR-E------DFGSMLLNTFYNNSTKERSSIFAEGG 116 (177)
T ss_dssp HHHHT-T------CHHHHHHHHHHHTCHHHHHHHHHHTT
T ss_pred HHHHC-c------cHHHHHHHHHHcCCHHHHHHHHHHCC
Confidence 22211 1 12333344555666666666666554
No 236
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=95.48 E-value=0.12 Score=39.58 Aligned_cols=90 Identities=16% Similarity=-0.028 Sum_probs=61.3
Q ss_pred CcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHH---HHHHHhhC-CCC-C--CHHHHHHHHHHHhcCCCHHH
Q 007808 410 GLVEEGLSYFQSMAMDYSIVPQIEHYGCMVDLLARAGRLAE---AVDFVKRM-PIE-A--DAVIWANLLGSCRVYKNVEL 482 (589)
Q Consensus 410 g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~---A~~~~~~~-~~~-p--~~~~~~~l~~~~~~~g~~~~ 482 (589)
.....+.+-|...... +. |+..+--.+..++++..+..+ ++.++++. ... | .....-.+.-++.+.|++++
T Consensus 15 ~~l~~~~~~y~~e~~~-~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~ 92 (126)
T 1nzn_A 15 EDLLKFEKKFQSEKAA-GS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEK 92 (126)
T ss_dssp HHHHHHHHHHHHHHHH-SC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHhcc-CC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHH
Confidence 3444555555555332 22 666666667788888877666 77788776 222 4 22334445578899999999
Q ss_pred HHHHHHHHHccCCCCCcch
Q 007808 483 AELALERLTELEPKNPANF 501 (589)
Q Consensus 483 A~~~~~~~~~~~p~~~~~~ 501 (589)
|.++++.+++++|+|..+.
T Consensus 93 A~~~~~~lL~~eP~n~QA~ 111 (126)
T 1nzn_A 93 ALKYVRGLLQTEPQNNQAK 111 (126)
T ss_dssp HHHHHHHHHHHCTTCHHHH
T ss_pred HHHHHHHHHHhCCCCHHHH
Confidence 9999999999999876543
No 237
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=94.87 E-value=0.082 Score=54.73 Aligned_cols=54 Identities=15% Similarity=-0.044 Sum_probs=50.7
Q ss_pred HHHhcCCCHHHHHHHHHHHHccCCCCCcchHHHHHHHhhcCChHHHHHHHHHhh
Q 007808 472 GSCRVYKNVELAELALERLTELEPKNPANFVMLSNIYGDLGRWKDVARIKVAMR 525 (589)
Q Consensus 472 ~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 525 (589)
..|...|+++.|+++.++++...|.+..+|..|+.+|...|+|+.|+-.+..+.
T Consensus 345 ~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 345 NFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred HHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 556789999999999999999999999999999999999999999999999884
No 238
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=94.70 E-value=1.5 Score=35.99 Aligned_cols=130 Identities=14% Similarity=0.069 Sum_probs=89.6
Q ss_pred HHHHhcCChhHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHhhCCCCCcchHHHHHHHHHhCCChHHHHH
Q 007808 303 SACARLGALDFSKWVHVYAEYNGYQGNVCVGNALIDMYAKCGIIENAVDVFNSMDTKDLITWNTIISGLAMHGRGAGALS 382 (589)
Q Consensus 303 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 382 (589)
......|+++.|.++.+.+ .+...|..|.+.....|+++-|++.|.+... +..+.-.|.-.|+.++-..
T Consensus 13 ~LAL~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D-----~~~L~~Ly~~tg~~e~L~k 81 (177)
T 3mkq_B 13 DLALEYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQHS-----FDKLSFLYLVTGDVNKLSK 81 (177)
T ss_dssp HHHHHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC-----HHHHHHHHHHHTCHHHHHH
T ss_pred HHHHhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC-----HHHHHHHHHHhCCHHHHHH
Confidence 3455678888888876654 3677899999999999999999999988764 4555556677788777666
Q ss_pred HHHHHHHCCCCCCHhHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHhhCC
Q 007808 383 LFHEMKNAGEMPDGITFIGILCACTHMGLVEEGLSYFQSMAMDYSIVPQIEHYGCMVDLLARAGRLAEAVDFVKRMP 459 (589)
Q Consensus 383 ~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 459 (589)
+-+.....| -++.....+...|+++++.++|.+.- .-|... ......|..+.|.++.++++
T Consensus 82 la~iA~~~g------~~n~af~~~l~lGdv~~~i~lL~~~~----r~~eA~------~~A~t~g~~~~a~~~~~~~~ 142 (177)
T 3mkq_B 82 MQNIAQTRE------DFGSMLLNTFYNNSTKERSSIFAEGG----SLPLAY------AVAKANGDEAAASAFLEQAE 142 (177)
T ss_dssp HHHHHHHTT------CHHHHHHHHHHHTCHHHHHHHHHHTT----CHHHHH------HHHHHTTCHHHHHHHHHHTT
T ss_pred HHHHHHHCc------cHHHHHHHHHHcCCHHHHHHHHHHCC----ChHHHH------HHHHHcCcHHHHHHHHHHhC
Confidence 655555544 24455556667799999999987662 223221 12224667788888888774
No 239
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=94.47 E-value=6 Score=42.01 Aligned_cols=27 Identities=15% Similarity=0.178 Sum_probs=22.0
Q ss_pred cchHHHHHHHHccCChhHHHHHhhcCC
Q 007808 35 YITPRIITACAQLKQMTYARKMFDKIT 61 (589)
Q Consensus 35 ~~~~~l~~~~~~~~~~~~A~~~~~~~~ 61 (589)
.-|..+++.+.+.++.+.+.++|+...
T Consensus 231 ~dy~~a~~~ai~LnD~~li~~if~~l~ 257 (963)
T 4ady_A 231 CDYLTLNKVVVNLNDAGLALQLFKKLK 257 (963)
T ss_dssp CCHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 456777888888899999999998864
No 240
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=94.46 E-value=1.3 Score=34.20 Aligned_cols=140 Identities=10% Similarity=0.021 Sum_probs=78.5
Q ss_pred HHhCCChHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHH
Q 007808 269 YANNGLFFEVLDAFKRMLTEGRVFPNDATIVTVLSACARLGALDFSKWVHVYAEYNGYQGNVCVGNALIDMYAKCGIIEN 348 (589)
Q Consensus 269 ~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 348 (589)
+.-.|..++..++..+..... +..-++.++--....-+-+-..++++.+-+ -.|. ..+|++..
T Consensus 17 ~ildG~v~qGveii~k~~~ss----ni~E~NW~ICNiiD~a~C~y~v~vLd~IGk---iFDi----------s~C~NlKr 79 (172)
T 1wy6_A 17 FLLDGYIDEGVKIVLEITKSS----TKSEYNWFICNLLESIDCRYMFQVLDKIGS---YFDL----------DKCQNLKS 79 (172)
T ss_dssp HHHTTCHHHHHHHHHHHHHHS----CHHHHTHHHHHHHHHCCHHHHHHHHHHHGG---GSCG----------GGCSCTHH
T ss_pred HHHhhhHHHHHHHHHHHcCCC----CccccceeeeecchhhchhHHHHHHHHHhh---hcCc----------HhhhcHHH
Confidence 344567777777777666543 334444444444444444444443333322 1111 12334444
Q ss_pred HHHHHhhCCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCcHHHHHHHHHHhHHhcCC
Q 007808 349 AVDVFNSMDTKDLITWNTIISGLAMHGRGAGALSLFHEMKNAGEMPDGITFIGILCACTHMGLVEEGLSYFQSMAMDYSI 428 (589)
Q Consensus 349 A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 428 (589)
....+-.+.. +.......+..+..+|+-++-.+++..+... .+|++.....+..+|.+.|+..+|.+++.++.++ |+
T Consensus 80 Vi~C~~~~n~-~se~vd~ALd~lv~~~KkDqLdki~~~~l~n-~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~k-G~ 156 (172)
T 1wy6_A 80 VVECGVINNT-LNEHVNKALDILVIQGKRDKLEEIGREILKN-NEVSASILVAIANALRRVGDERDATTLLIEACKK-GE 156 (172)
T ss_dssp HHHHHHHTTC-CCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT-TC
T ss_pred HHHHHHHhcc-hHHHHHHHHHHHHHhccHhHHHHHHHHHhcc-CCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHh-hh
Confidence 4443333322 3334455667777788888888887775442 4677777777888888888888888888777654 44
No 241
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=93.99 E-value=2.6 Score=35.95 Aligned_cols=124 Identities=10% Similarity=0.111 Sum_probs=52.3
Q ss_pred CCCeehHHHHHHHHHhCCCHHHHHHHHHhCCCCChhHHHHHHHHHhcCCChHHHHHHhcccCCCChhhHHHHHHHHHhcC
Q 007808 163 ERNVVVWTSMINGYISCGDIVSARCLFELAPERDVILWNTIVSGYIDVRNMIEARKLFDQMPKKDVISWNTMLSGYANNG 242 (589)
Q Consensus 163 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~ 242 (589)
.++...-...+.++...|+.+..-.+.+.+.++|...-...+.++.+.|+.+....+.+.+..++..+....+.++.+.+
T Consensus 61 ~~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~ 140 (211)
T 3ltm_A 61 DEDAWVRRAAADALGQIGDERAVEPLIKALKDEDGWVRQSAAVALGQIGDERAVEPLIKALKDEDWFVRIAAAFALGEIG 140 (211)
T ss_dssp CSCHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHHhhCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCcHHHHHHHHHHHhCCCHHHHHHHHHHHHHcC
Confidence 33433444444444444443333333333444454444444555555554433333333333355545445555555555
Q ss_pred CHHHHHHHHhhCCCCCchhHHHHHHHHHhCCChHHHHHHHHHHHH
Q 007808 243 DVEECKRLFEEMPERNVFSWNGLIGGYANNGLFFEVLDAFKRMLT 287 (589)
Q Consensus 243 ~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 287 (589)
+.+....+...+..++...-...+.++.+.+. .++...+..+.+
T Consensus 141 ~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~-~~~~~~L~~~l~ 184 (211)
T 3ltm_A 141 DERAVEPLIKALKDEDGWVRQSAADALGEIGG-ERVRAAMEKLAE 184 (211)
T ss_dssp CGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-hhHHHHHHHHHh
Confidence 43333333333333443333333444444333 334444444443
No 242
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=93.33 E-value=4.8 Score=36.93 Aligned_cols=113 Identities=11% Similarity=-0.043 Sum_probs=58.7
Q ss_pred cchHHHHHHHHccCChhHHHHHhhcCCCCCcccHHHHHHHHHcCCChhHHHHHH----HHhhhCCCCCCcccHHHHHHHH
Q 007808 35 YITPRIITACAQLKQMTYARKMFDKITDQNVVSWNAMFNGYAQNEFHRTVVVLF----TQMKKLDAMPNCFTFPIVLKSC 110 (589)
Q Consensus 35 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~----~~m~~~~~~p~~~~~~~ll~~~ 110 (589)
.+|.++..-|.+.+++++|++++.. -...+.+.|+...+.++- +...+.++++|......++..+
T Consensus 36 Q~~RTi~~Ry~~~k~y~eAidLL~~-----------GA~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L~ 104 (336)
T 3lpz_A 36 QETRLVAARYSKQGNWAAAVDILAS-----------VSQTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGCL 104 (336)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcCHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 4556666677777777777776532 244455566666655543 4444556677766666666665
Q ss_pred hccCChH-HHHHHH----HHHHHhC--CCCchHHHhHHHHHHHcCCChHHHHHHH
Q 007808 111 VKINALR-EGEELH----CLVLKNG--FRANIFVGTALIELYSTGKAIEAAYKVF 158 (589)
Q Consensus 111 ~~~~~~~-~a~~~~----~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~ 158 (589)
.....-+ .=..+. .+-.+.| ..-|+.....+...|.+.+++.+|+..|
T Consensus 105 ~~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~ 159 (336)
T 3lpz_A 105 RLFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHL 159 (336)
T ss_dssp TTSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HhCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHH
Confidence 5443211 111122 2222222 2234445555555555555555555555
No 243
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=93.10 E-value=0.2 Score=39.43 Aligned_cols=99 Identities=10% Similarity=0.081 Sum_probs=46.0
Q ss_pred CHhHHHHHHHHHhccCcH------HHHHHHHHHhHHhcCCCCChH-HHHHHHH------HHHhcCCHHHHHHHHhhCC--
Q 007808 395 DGITFIGILCACTHMGLV------EEGLSYFQSMAMDYSIVPQIE-HYGCMVD------LLARAGRLAEAVDFVKRMP-- 459 (589)
Q Consensus 395 ~~~~~~~l~~~~~~~g~~------~~A~~~~~~~~~~~~~~~~~~-~~~~l~~------~~~~~g~~~~A~~~~~~~~-- 459 (589)
|..+|-..+....+.|+. ++..++|+++.. .++|+.. .|...+. .+...++.++|.++|+.+.
T Consensus 12 ~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia--~~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~~ 89 (161)
T 4h7y_A 12 NPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIE--ALPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARAN 89 (161)
T ss_dssp SHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHH--HSCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHH--cCCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 455555555555555666 666666666654 3444321 1111111 1122345555555555441
Q ss_pred -CCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHccCCC
Q 007808 460 -IEADAVIWANLLGSCRVYKNVELAELALERLTELEPK 496 (589)
Q Consensus 460 -~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 496 (589)
..- ...|-.....-.++|+...|.+++.+++.+.|.
T Consensus 90 hKkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k 126 (161)
T 4h7y_A 90 CKKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERGAV 126 (161)
T ss_dssp CTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCB
T ss_pred hHHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCC
Confidence 011 333333333334555555555555555555554
No 244
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=93.10 E-value=0.68 Score=36.54 Aligned_cols=98 Identities=11% Similarity=0.149 Sum_probs=70.0
Q ss_pred CCCcchHHHHHHHHHhCCCh------HHHHHHHHHHHHCCCCCCHhH----HHHHHH---HHhccCcHHHHHHHHHHhHH
Q 007808 358 TKDLITWNTIISGLAMHGRG------AGALSLFHEMKNAGEMPDGIT----FIGILC---ACTHMGLVEEGLSYFQSMAM 424 (589)
Q Consensus 358 ~~~~~~~~~l~~~~~~~~~~------~~A~~~~~~m~~~~~~p~~~~----~~~l~~---~~~~~g~~~~A~~~~~~~~~ 424 (589)
..|..+|-..+...-+.|++ ++..++|++.... ++|+... |..+-- .+...++.++|.++|+.++.
T Consensus 10 p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~-~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~ 88 (161)
T 4h7y_A 10 ANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA-LPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARA 88 (161)
T ss_dssp CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH-SCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc-CCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 45778888888888888888 8888889888875 6775421 211111 12344788889999988865
Q ss_pred hcCCCCChHHHHHHHHHHHhcCCHHHHHHHHhhC
Q 007808 425 DYSIVPQIEHYGCMVDLLARAGRLAEAVDFVKRM 458 (589)
Q Consensus 425 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 458 (589)
. .-.- ...|......-.+.|+...|.+++.+.
T Consensus 89 ~-hKkF-AKiwi~~AqFEiRqgnl~kARkILg~A 120 (161)
T 4h7y_A 89 N-CKKF-AFVHISFAQFELSQGNVKKSKQLLQKA 120 (161)
T ss_dssp H-CTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred H-hHHH-HHHHHHHHHHHHHcccHHHHHHHHHHH
Confidence 4 2222 777777778788899999999998876
No 245
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=93.05 E-value=3.6 Score=34.70 Aligned_cols=80 Identities=11% Similarity=0.087 Sum_probs=34.0
Q ss_pred CCeehHHHHHHHHHhCCCHHHHHHHHHhCCCCChhHHHHHHHHHhcCCChHHHHHHhcccCCCChhhHHHHHHHHHhcCC
Q 007808 164 RNVVVWTSMINGYISCGDIVSARCLFELAPERDVILWNTIVSGYIDVRNMIEARKLFDQMPKKDVISWNTMLSGYANNGD 243 (589)
Q Consensus 164 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~ 243 (589)
++...-...+.++...|..+..-.+.+.+.+++...-...+.++.+.++.+....+.+.+..++..+....+.++.+.++
T Consensus 57 ~~~~vr~~a~~~L~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~ 136 (201)
T 3ltj_A 57 EDAWVRRAAADALGQIGDERAVEPLIKALKDEDGWVRQSAAVALGQIGDERAVEPLIKALKDEDWFVRIAAAFALGEIGD 136 (201)
T ss_dssp SSHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHTC
T ss_pred CCHHHHHHHHHHHHhhCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCC
Confidence 33333334444444444443333333334444444444444444444443333333333333444444444444444444
No 246
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=91.50 E-value=0.57 Score=41.21 Aligned_cols=53 Identities=9% Similarity=-0.015 Sum_probs=38.4
Q ss_pred HHhcCCCHHHHHHHHHHHHccCCCCCcchHHHHHHHhhcCChHHHHHHHHHhh
Q 007808 473 SCRVYKNVELAELALERLTELEPKNPANFVMLSNIYGDLGRWKDVARIKVAMR 525 (589)
Q Consensus 473 ~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 525 (589)
...+.|+.++|++..+..++-+|.|......|...+|-.|+|+.|.+-++-..
T Consensus 6 ~ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a 58 (273)
T 1zbp_A 6 NALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSI 58 (273)
T ss_dssp HHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 34566777777777777777777777777777777777777777777666664
No 247
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=91.40 E-value=1.3 Score=35.61 Aligned_cols=24 Identities=8% Similarity=0.155 Sum_probs=15.6
Q ss_pred HHHHHHHHhcCCHHHHHHHHhhCC
Q 007808 436 GCMVDLLARAGRLAEAVDFVKRMP 459 (589)
Q Consensus 436 ~~l~~~~~~~g~~~~A~~~~~~~~ 459 (589)
-.+..+|.+.|++++|+.+++.++
T Consensus 126 ykia~C~~~l~~~~~Ai~~Le~Ip 149 (167)
T 3ffl_A 126 YKLAECYTVLKQDKDAIAILDGIP 149 (167)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTSC
T ss_pred HHHHHHHHHHCCHHHHHHHHhcCC
Confidence 335566667777777777776664
No 248
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=90.87 E-value=19 Score=38.35 Aligned_cols=253 Identities=15% Similarity=0.104 Sum_probs=125.7
Q ss_pred HHhcCCChHHHHHHhcccCC----CChh--hHHHHHHHHHhcCCHHHHHHHHhhCCC-CC----------chhHHHHHHH
Q 007808 206 GYIDVRNMIEARKLFDQMPK----KDVI--SWNTMLSGYANNGDVEECKRLFEEMPE-RN----------VFSWNGLIGG 268 (589)
Q Consensus 206 ~~~~~g~~~~a~~~~~~~~~----~~~~--~~~~l~~~~~~~~~~~~A~~~~~~~~~-~~----------~~~~~~l~~~ 268 (589)
+....|+.+++..++..... .+.. .=..+.-+....|.-+++...+..... ++ +..-.++.-+
T Consensus 383 GlIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLG 462 (963)
T 4ady_A 383 GVIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIG 462 (963)
T ss_dssp HHHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHH
T ss_pred hhhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHH
Confidence 45667888888888887764 1222 222333445556665566665555432 22 1112233333
Q ss_pred HHhCCC-hHHHHHHHHHHHHcCCCCCcHHHHH--HHHHHHHhcCChhHHHHHHHHHHHcCCCCChhHHHHHHH--HHHhc
Q 007808 269 YANNGL-FFEVLDAFKRMLTEGRVFPNDATIV--TVLSACARLGALDFSKWVHVYAEYNGYQGNVCVGNALID--MYAKC 343 (589)
Q Consensus 269 ~~~~g~-~~~A~~~~~~~~~~~~~~p~~~~~~--~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~ 343 (589)
++..|. -+++.+.+..++... .+...... .+...+.-.|+.+....++..+.+.. +..+...+.. ++...
T Consensus 463 la~~GS~~eev~e~L~~~L~dd--~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~---~e~vrR~aalgLGll~~ 537 (963)
T 4ady_A 463 LAAMGSANIEVYEALKEVLYND--SATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQ---HGNITRGLAVGLALINY 537 (963)
T ss_dssp HHSTTCCCHHHHHHHHHHHHTC--CHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCS---CHHHHHHHHHHHHHHTT
T ss_pred HHhcCCCCHHHHHHHHHHHhcC--CHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccC---cHHHHHHHHHHHHhhhC
Confidence 443443 246667777666543 11111112 22223445566666666766665532 2233333333 33456
Q ss_pred CChHHHHHHHhhCCC-CCcch-HH---HHHHHHHhCCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCcHHHHHHH
Q 007808 344 GIIENAVDVFNSMDT-KDLIT-WN---TIISGLAMHGRGAGALSLFHEMKNAGEMPDGITFIGILCACTHMGLVEEGLSY 418 (589)
Q Consensus 344 g~~~~A~~~~~~~~~-~~~~~-~~---~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~ 418 (589)
|+.+.+..+.+.+.. .++.. |. ++..+|+..|+......++..+... ...+......+.-++...|+.+.+.++
T Consensus 538 g~~e~~~~li~~L~~~~dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d-~~d~VRraAViaLGlI~~g~~e~v~rl 616 (963)
T 4ady_A 538 GRQELADDLITKMLASDESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSD-SNDDVRRAAVIALGFVLLRDYTTVPRI 616 (963)
T ss_dssp TCGGGGHHHHHHHHHCSCHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHC-SCHHHHHHHHHHHHHHTSSSCSSHHHH
T ss_pred CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccC-CcHHHHHHHHHHHHhhccCCHHHHHHH
Confidence 776666666665542 23322 22 2344566778876666677777763 122222222233344445665556666
Q ss_pred HHHhHHhcCCCCChHHHHHHHHHHHhcCCH-HHHHHHHhhCCCCCCHHH
Q 007808 419 FQSMAMDYSIVPQIEHYGCMVDLLARAGRL-AEAVDFVKRMPIEADAVI 466 (589)
Q Consensus 419 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~A~~~~~~~~~~p~~~~ 466 (589)
++.+.+ ...|.+..-..+.-+....|.. .+|++.+..+..++|..+
T Consensus 617 v~~L~~--~~d~~VR~gAalALGli~aGn~~~~aid~L~~L~~D~d~~V 663 (963)
T 4ady_A 617 VQLLSK--SHNAHVRCGTAFALGIACAGKGLQSAIDVLDPLTKDPVDFV 663 (963)
T ss_dssp TTTGGG--CSCHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHTCSSHHH
T ss_pred HHHHHh--cCCHHHHHHHHHHHHHhccCCCcHHHHHHHHHHccCCCHHH
Confidence 655533 2234444333444444444443 567777777744555443
No 249
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=90.79 E-value=1.8 Score=33.85 Aligned_cols=71 Identities=14% Similarity=0.056 Sum_probs=50.2
Q ss_pred CCChHHHHHHHHHHHhcCCHH---HHHHHHhhC-CCCC-CH-HHHHHHHHHHhcCCCHHHHHHHHHHHHccCCCCCc
Q 007808 429 VPQIEHYGCMVDLLARAGRLA---EAVDFVKRM-PIEA-DA-VIWANLLGSCRVYKNVELAELALERLTELEPKNPA 499 (589)
Q Consensus 429 ~~~~~~~~~l~~~~~~~g~~~---~A~~~~~~~-~~~p-~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 499 (589)
.|+..+--.+..++++..+.+ +++.++++. ...| +. ...-.+.-++.+.|++++|.++.+.+++++|+|..
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~Q 112 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQ 112 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHH
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHH
Confidence 466666666677777777554 456666665 2234 33 33444557899999999999999999999998653
No 250
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=90.63 E-value=9 Score=34.25 Aligned_cols=18 Identities=11% Similarity=0.014 Sum_probs=7.1
Q ss_pred CCeehHHHHHHHHHhCCC
Q 007808 164 RNVVVWTSMINGYISCGD 181 (589)
Q Consensus 164 ~~~~~~~~l~~~~~~~g~ 181 (589)
++...-...+.++...|+
T Consensus 140 ~~~~vR~~a~~aL~~~~~ 157 (280)
T 1oyz_A 140 KSTNVRRATAFAISVIND 157 (280)
T ss_dssp SCHHHHHHHHHHHHTC--
T ss_pred CCHHHHHHHHHHHHhcCC
Confidence 444444444444444444
No 251
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=90.08 E-value=9.2 Score=37.16 Aligned_cols=186 Identities=9% Similarity=0.071 Sum_probs=117.3
Q ss_pred CCChHHHHHHHHHHHHcC----CCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhHHHHHH----HHHHhc
Q 007808 272 NGLFFEVLDAFKRMLTEG----RVFPNDATIVTVLSACARLGALDFSKWVHVYAEYNGYQGNVCVGNALI----DMYAKC 343 (589)
Q Consensus 272 ~g~~~~A~~~~~~~~~~~----~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~----~~~~~~ 343 (589)
.|++++|++.+..+.+.. ...........++..|...++++...+.+..+.+..... ......++ ......
T Consensus 29 ~~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~ql-k~ai~~~V~~~~~~l~~~ 107 (445)
T 4b4t_P 29 QNDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQL-KLSIQYMIQKVMEYLKSS 107 (445)
T ss_dssp HHHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTS-HHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhh-HHHHHHHHHHHHHHHhcC
Confidence 378999998887776532 133456678889999999999999888777665443221 22223333 333333
Q ss_pred CChH--HHHHHHhhCCC---CCc-------chHHHHHHHHHhCCChHHHHHHHHHHHHC--CCCCC---HhHHHHHHHHH
Q 007808 344 GIIE--NAVDVFNSMDT---KDL-------ITWNTIISGLAMHGRGAGALSLFHEMKNA--GEMPD---GITFIGILCAC 406 (589)
Q Consensus 344 g~~~--~A~~~~~~~~~---~~~-------~~~~~l~~~~~~~~~~~~A~~~~~~m~~~--~~~p~---~~~~~~l~~~~ 406 (589)
...+ .-..+.+.+.. .-. .....|...|...|++.+|.+++..+... |..+. ...+...++.|
T Consensus 108 ~~~d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~ 187 (445)
T 4b4t_P 108 KSLDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELS 187 (445)
T ss_dssp CTTHHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 3322 22333333331 111 12356788889999999999999998752 32222 12456667788
Q ss_pred hccCcHHHHHHHHHHhHHh-cCCCCC----hHHHHHHHHHHHhcCCHHHHHHHHhhC
Q 007808 407 THMGLVEEGLSYFQSMAMD-YSIVPQ----IEHYGCMVDLLARAGRLAEAVDFVKRM 458 (589)
Q Consensus 407 ~~~g~~~~A~~~~~~~~~~-~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~ 458 (589)
...+++.+|..+++++... ....+. ...+...+..+...+++.+|-+.|.++
T Consensus 188 l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~ 244 (445)
T 4b4t_P 188 ILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEI 244 (445)
T ss_dssp HHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 8999999999999887432 122222 234566777888888998887766554
No 252
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=90.05 E-value=11 Score=34.30 Aligned_cols=184 Identities=10% Similarity=0.025 Sum_probs=107.4
Q ss_pred HHHHhcCCChHHHHHHhcccCCCChhhHHHHHHHHHhcCCHHHHHHHHhhCCCCCchhHHHHHHHHHhCCChHHHHHH--
Q 007808 204 VSGYIDVRNMIEARKLFDQMPKKDVISWNTMLSGYANNGDVEECKRLFEEMPERNVFSWNGLIGGYANNGLFFEVLDA-- 281 (589)
Q Consensus 204 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~-- 281 (589)
+......|++-+|.+.+ .++..-|.+.+++++|.+++..- ...+.+.|+...|.++
T Consensus 20 l~~~I~~G~yYEAhQ~~-----------Rtl~~Ry~~~~~~~eAidlL~~g-----------a~~ll~~~Q~~sa~DLa~ 77 (312)
T 2wpv_A 20 FENKIKAGDYYEAHQTL-----------RTIANRYVRSKSYEHAIELISQG-----------ALSFLKAKQGGSGTDLIF 77 (312)
T ss_dssp HHHHHHHTCHHHHHHHH-----------HHHHHHHHHTTCHHHHHHHHHHH-----------HHHHHHTTCHHHHHHHHH
T ss_pred HHHHhhccChHHHHHHH-----------HHHHHHHHHhcCHHHHHHHHHHH-----------HHHHHHCCCcchHHHHHH
Confidence 34445667777776665 45677788888888888876442 3445666776666554
Q ss_pred --HHHHHHcCCCCCcHHHHHHHHHHHHhcCCh-----hHHHHHHHHHHHcCC--CCChhHHHHHHHHHHhcCChHHHHHH
Q 007808 282 --FKRMLTEGRVFPNDATIVTVLSACARLGAL-----DFSKWVHVYAEYNGY--QGNVCVGNALIDMYAKCGIIENAVDV 352 (589)
Q Consensus 282 --~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~-----~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~ 352 (589)
++...+.+ ++++......++..+..-... +-.........+.|. ..++.....+...|.+.|++.+|+.-
T Consensus 78 llvev~~~~~-~~~~~~~~~rl~~l~~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H 156 (312)
T 2wpv_A 78 YLLEVYDLAE-VKVDDISVARLVRLIAELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERY 156 (312)
T ss_dssp HHHHHHHHTT-CCCSHHHHHHHHHHHTTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHcC-CCCCHHHHHHHHHHHHHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHH
Confidence 44444556 788888877777776553321 122233333333332 24778888899999999999999887
Q ss_pred HhhCCCCCcchHHHHHHHHHhC---CChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCcHHHHHHHHHHhHHh
Q 007808 353 FNSMDTKDLITWNTIISGLAMH---GRGAGALSLFHEMKNAGEMPDGITFIGILCACTHMGLVEEGLSYFQSMAMD 425 (589)
Q Consensus 353 ~~~~~~~~~~~~~~l~~~~~~~---~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 425 (589)
|-.-...+...+..++.-+... |...++-- ..-..++ -|.-.|+...|..+++...+.
T Consensus 157 ~i~~~~~s~~~~a~~l~~w~~~~~~~~~~e~dl--------------f~~RaVL-~yL~l~n~~~A~~~~~~f~~~ 217 (312)
T 2wpv_A 157 FMLGTHDSMIKYVDLLWDWLCQVDDIEDSTVAE--------------FFSRLVF-NYLFISNISFAHESKDIFLER 217 (312)
T ss_dssp HHTSCHHHHHHHHHHHHHHHHHTTCCCHHHHHH--------------HHHHHHH-HHHHTTBHHHHHHHHHHHHHH
T ss_pred HHhCCCccHHHHHHHHHHHHHhcCCCCcchHHH--------------HHHHHHH-HHHHhcCHHHHHHHHHHHHHH
Confidence 7632222344444443333332 32222111 1111222 244568888888888876543
No 253
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=89.63 E-value=0.67 Score=44.33 Aligned_cols=66 Identities=17% Similarity=0.058 Sum_probs=51.1
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHccCCCCCcchHHHHHHHhhcCChHHHHHHHHHhhh-----CCCccCC
Q 007808 468 ANLLGSCRVYKNVELAELALERLTELEPKNPANFVMLSNIYGDLGRWKDVARIKVAMRD-----TGFKKLP 533 (589)
Q Consensus 468 ~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~ 533 (589)
..++..+...|++++|...++.++..+|-+...+..++.+|.+.|+..+|++.|++..+ -|+.|.|
T Consensus 175 ~~~~~~~l~~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~ 245 (388)
T 2ff4_A 175 TAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGP 245 (388)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCH
Confidence 34556667788888888888888888888788888888888888888888888877643 3666654
No 254
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=89.56 E-value=8.8 Score=32.50 Aligned_cols=161 Identities=9% Similarity=0.083 Sum_probs=92.7
Q ss_pred HHccCCCCCeehHHHHHHHHHhCCCHHHHHHHHHhCCCCChhHHHHHHHHHhcCCChHHHHHHhcccCCCChhhHHHHHH
Q 007808 157 VFGEMDERNVVVWTSMINGYISCGDIVSARCLFELAPERDVILWNTIVSGYIDVRNMIEARKLFDQMPKKDVISWNTMLS 236 (589)
Q Consensus 157 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~ 236 (589)
+.+.+..++...-...+..+.+.|..+..-.+.+.+.++|...-...+.++...+..+....+.+.+..++..+....+.
T Consensus 24 L~~~L~~~~~~vR~~A~~~L~~~~~~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~~~~~~vr~~a~~ 103 (211)
T 3ltm_A 24 YIKNLQDDSYYVRRAAAYALGKIGDERAVEPLIKALKDEDAWVRRAAADALGQIGDERAVEPLIKALKDEDGWVRQSAAV 103 (211)
T ss_dssp HHHHTTCSSHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSCHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHH
T ss_pred HHHHHcCCCHHHHHHHHHHHHHhCCccHHHHHHHHHcCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHcCCCHHHHHHHHH
Confidence 33334445555555556666666665555555555566676666666777777776555555555555577777777777
Q ss_pred HHHhcCCHHHHHHHHhhCCCCCchhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHhcCChhHHHH
Q 007808 237 GYANNGDVEECKRLFEEMPERNVFSWNGLIGGYANNGLFFEVLDAFKRMLTEGRVFPNDATIVTVLSACARLGALDFSKW 316 (589)
Q Consensus 237 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~ 316 (589)
++.+.++.+....+.+.+..++...-...+.++...|+. +++..+..+.+. ++...-...+.++.+.+. ..+..
T Consensus 104 aL~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~-~~~~~L~~~l~d----~~~~vr~~a~~aL~~~~~-~~~~~ 177 (211)
T 3ltm_A 104 ALGQIGDERAVEPLIKALKDEDWFVRIAAAFALGEIGDE-RAVEPLIKALKD----EDGWVRQSAADALGEIGG-ERVRA 177 (211)
T ss_dssp HHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCG-GGHHHHHHHTTC----SSHHHHHHHHHHHHHHCS-HHHHH
T ss_pred HHHHhCcHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCH-HHHHHHHHHHcC----CCHHHHHHHHHHHHHhCc-hhHHH
Confidence 777777765555555555556665555556666666553 345555555432 455555555666666654 33334
Q ss_pred HHHHHHH
Q 007808 317 VHVYAEY 323 (589)
Q Consensus 317 ~~~~~~~ 323 (589)
.+..+.+
T Consensus 178 ~L~~~l~ 184 (211)
T 3ltm_A 178 AMEKLAE 184 (211)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 4444433
No 255
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=88.80 E-value=2.4 Score=30.64 Aligned_cols=63 Identities=10% Similarity=0.079 Sum_probs=50.3
Q ss_pred ChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHH
Q 007808 376 RGAGALSLFHEMKNAGEMPDGITFIGILCACTHMGLVEEGLSYFQSMAMDYSIVPQIEHYGCMVD 440 (589)
Q Consensus 376 ~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~ 440 (589)
+.-+...-++.+....+.|++......+.+|.+.+++..|.++++.+..+.+.. ..+|..+++
T Consensus 25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~~~~--~~iY~~~lq 87 (109)
T 1v54_E 25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPH--KEIYPYVIQ 87 (109)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTC--TTHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCc--hhhHHHHHH
Confidence 444667777778888899999999999999999999999999999887655433 456776664
No 256
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=87.76 E-value=2.5 Score=32.53 Aligned_cols=71 Identities=14% Similarity=0.056 Sum_probs=46.6
Q ss_pred CCChHHHHHHHHHHHhcCCHH---HHHHHHhhC-CCCC-C-HHHHHHHHHHHhcCCCHHHHHHHHHHHHccCCCCCc
Q 007808 429 VPQIEHYGCMVDLLARAGRLA---EAVDFVKRM-PIEA-D-AVIWANLLGSCRVYKNVELAELALERLTELEPKNPA 499 (589)
Q Consensus 429 ~~~~~~~~~l~~~~~~~g~~~---~A~~~~~~~-~~~p-~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 499 (589)
.|++.+--.+..++++....+ +++.++++. ...| . ...+-.+.-++.+.|++++|.++.+.+++++|+|..
T Consensus 37 ~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~Q 113 (134)
T 3o48_A 37 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQ 113 (134)
T ss_dssp GSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHH
T ss_pred CCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHH
Confidence 355555555666676666543 456666655 2234 2 344455557788889999999999999999888654
No 257
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=87.60 E-value=17 Score=33.36 Aligned_cols=182 Identities=10% Similarity=0.010 Sum_probs=101.8
Q ss_pred HHHhcCCCh---HHHHHHhcccCCCChhhHHHHHHHHHhcCCHHHHHHHHhhCCCCCchhHHHHHHHHHhCCChHHHHHH
Q 007808 205 SGYIDVRNM---IEARKLFDQMPKKDVISWNTMLSGYANNGDVEECKRLFEEMPERNVFSWNGLIGGYANNGLFFEVLDA 281 (589)
Q Consensus 205 ~~~~~~g~~---~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 281 (589)
......|++ -+|.+.+ .++..-|.+.+++++|.+++-.- ...+.+.|+...|.++
T Consensus 20 ~~~I~~G~y~~~YEAHQ~~-----------RTi~~Ry~~~k~y~eAidLL~~G-----------A~~ll~~~Q~~sg~DL 77 (336)
T 3lpz_A 20 QRRIAEGQPEEQYEAAQET-----------RLVAARYSKQGNWAAAVDILASV-----------SQTLLRSGQGGSGGDL 77 (336)
T ss_dssp HHHHHHCCHHHHHHHHHHH-----------HHHHHHHHHTTCHHHHHHHHHHH-----------HHHHHHTTCHHHHHHH
T ss_pred HHHHhCCCCccccHHHHHH-----------HHHHHHHHhhcCHHHHHHHHHHH-----------HHHHHHCCCcchHHHH
Confidence 334556777 5665554 45666677788888887776432 3345556666555444
Q ss_pred H----HHHHHcCCCCCcHHHHHHHHHHHHhcCChhHH-HHHHH----HHHHcC--CCCChhHHHHHHHHHHhcCChHHHH
Q 007808 282 F----KRMLTEGRVFPNDATIVTVLSACARLGALDFS-KWVHV----YAEYNG--YQGNVCVGNALIDMYAKCGIIENAV 350 (589)
Q Consensus 282 ~----~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a-~~~~~----~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~ 350 (589)
- +...+.+ +++|......++..+......+.. ..+.+ .-.+.| ...++.....+...|.+.+++.+|+
T Consensus 78 ~~llvevy~~~~-~~~~~~~~~rL~~L~~~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae 156 (336)
T 3lpz_A 78 AVLLVDTFRQAG-QRVDGASRGKLLGCLRLFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAE 156 (336)
T ss_dssp HHHHHHHHHHHT-CCCCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHcC-CCCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHH
Confidence 3 4445555 777777777777776655432211 22222 233333 3356778888999999999999998
Q ss_pred HHHhhCCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCcHHHHHHHHHHhHH
Q 007808 351 DVFNSMDTKDLITWNTIISGLAMHGRGAGALSLFHEMKNAGEMPDGITFIGILCACTHMGLVEEGLSYFQSMAM 424 (589)
Q Consensus 351 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 424 (589)
.-|-.-..+++..+..++.-+...+...+ ++...-..++ -|...++...|..+++...+
T Consensus 157 ~H~ilg~~~s~~~~a~mL~ew~~~~~~~e--------------~dlfiaRaVL-~yL~l~n~~~A~~~~~~f~~ 215 (336)
T 3lpz_A 157 KHLVLGTKESPEVLARMEYEWYKQDESHT--------------APLYCARAVL-PYLLVANVRAANTAYRIFTS 215 (336)
T ss_dssp HHHTTSCTTHHHHHHHHHHHHHHTSCGGG--------------HHHHHHHHHH-HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhcCCchHHHHHHHHHHHHHhcCCcc--------------HHHHHHHHHH-HHHHhCCHHHHHHHHHHHHH
Confidence 88743222223445444433333322111 1111222222 34556788888877666543
No 258
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=87.40 E-value=3.7 Score=39.09 Aligned_cols=70 Identities=10% Similarity=0.085 Sum_probs=49.3
Q ss_pred HHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCcHHHHHHHHHHhHH----hcCCCCChHHH
Q 007808 365 NTIISGLAMHGRGAGALSLFHEMKNAGEMPDGITFIGILCACTHMGLVEEGLSYFQSMAM----DYSIVPQIEHY 435 (589)
Q Consensus 365 ~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~~~~ 435 (589)
..++..+...|++++|+..++.+.... +-+...+..++.++...|+..+|++.|+.+.+ +.|+.|+..+-
T Consensus 175 ~~~~~~~l~~g~~~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~ 248 (388)
T 2ff4_A 175 TAKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLR 248 (388)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHH
Confidence 345566777788888888877777642 33667788888888888888888887776533 45777776543
No 259
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=87.30 E-value=20 Score=33.91 Aligned_cols=59 Identities=19% Similarity=0.078 Sum_probs=40.5
Q ss_pred HHHHHHHhCCChHHHHHHHHHHHHcCCCCCc-----HHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 007808 264 GLIGGYANNGLFFEVLDAFKRMLTEGRVFPN-----DATIVTVLSACARLGALDFSKWVHVYAEY 323 (589)
Q Consensus 264 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 323 (589)
-++..|...|++.+|.+++..+.+.- -..| ...+..-+..|...++..++...+..+..
T Consensus 104 kL~~l~~~~~~y~~a~~~i~~l~~~~-~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~ 167 (394)
T 3txn_A 104 RLIALYFDTALYTEALALGAQLLREL-KKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSART 167 (394)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHH-TTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHH-hccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHh
Confidence 46788889999999988888887752 1112 22345556667777888888777776654
No 260
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=87.27 E-value=5.3 Score=41.45 Aligned_cols=52 Identities=13% Similarity=0.098 Sum_probs=30.5
Q ss_pred HhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHhhCC
Q 007808 406 CTHMGLVEEGLSYFQSMAMDYSIVPQIEHYGCMVDLLARAGRLAEAVDFVKRMP 459 (589)
Q Consensus 406 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 459 (589)
|...|+++-|+++-++.+. -.+.+..+|..|..+|...|+++.|+-.+..++
T Consensus 347 Ll~K~~~elAL~~Ak~AV~--~aPseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 347 LLNRGDYELALGVSNTSTE--LALDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHTTCHHHHHHHHHHHHH--HCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred HhccCcHHHHHHHHHHHHh--cCchhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 4455666666666666543 122235566666666666666666666666554
No 261
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=87.23 E-value=17 Score=33.03 Aligned_cols=114 Identities=12% Similarity=0.094 Sum_probs=70.1
Q ss_pred HHHHHHHHHHhcCChHHHHHHHhhCCCCCcchHHHHHHHHHhCCChHHHHH----HHHHHHHCCCCCCHhHHHHHHHHHh
Q 007808 332 VGNALIDMYAKCGIIENAVDVFNSMDTKDLITWNTIISGLAMHGRGAGALS----LFHEMKNAGEMPDGITFIGILCACT 407 (589)
Q Consensus 332 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~----~~~~m~~~~~~p~~~~~~~l~~~~~ 407 (589)
+|.++..-|.+++++++|++++.. -...+.+.|+...|-+ +++-..+.+++++......++..+.
T Consensus 35 ~~Rtl~~Ry~~~~~~~eAidlL~~-----------ga~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l~~ 103 (312)
T 2wpv_A 35 TLRTIANRYVRSKSYEHAIELISQ-----------GALSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRLIA 103 (312)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 455666677888888888887654 2334556677666555 3455556778888777777776665
Q ss_pred ccCcHH-HHHHHHHHhHH---hcC--CCCChHHHHHHHHHHHhcCCHHHHHHHHh
Q 007808 408 HMGLVE-EGLSYFQSMAM---DYS--IVPQIEHYGCMVDLLARAGRLAEAVDFVK 456 (589)
Q Consensus 408 ~~g~~~-~A~~~~~~~~~---~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 456 (589)
....-+ .=.++++++++ +.+ -.-++.....+...|.+.|++.+|...|-
T Consensus 104 ~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i 158 (312)
T 2wpv_A 104 ELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFM 158 (312)
T ss_dssp TCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHH
Confidence 432111 01122222221 112 12356777888899999999999988664
No 262
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=87.07 E-value=2.6 Score=30.47 Aligned_cols=63 Identities=11% Similarity=0.127 Sum_probs=47.3
Q ss_pred ChhHHHHHHHHhhhCCCCCCcccHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchHHHhHHHH
Q 007808 80 FHRTVVVLFTQMKKLDAMPNCFTFPIVLKSCVKINALREGEELHCLVLKNGFRANIFVGTALIE 143 (589)
Q Consensus 80 ~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 143 (589)
+.-+..+-++.+...++.|++....+.+++|.|.+++..|.++++-....- .+...+|..+++
T Consensus 25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~-~~~~~iY~~~lq 87 (109)
T 1v54_E 25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA-GPHKEIYPYVIQ 87 (109)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTCTTHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh-cCchhhHHHHHH
Confidence 445667777788878888899999999999999999999999888876653 333455666554
No 263
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=86.74 E-value=4.8 Score=35.46 Aligned_cols=123 Identities=16% Similarity=0.092 Sum_probs=79.3
Q ss_pred HHHHhCCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChH----HHHHHHHHHHh
Q 007808 369 SGLAMHGRGAGALSLFHEMKNAGEMPDGITFIGILCACTHMGLVEEGLSYFQSMAMDYSIVPQIE----HYGCMVDLLAR 444 (589)
Q Consensus 369 ~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~----~~~~l~~~~~~ 444 (589)
..+.+.|+.++|++....-++.. +-|...-..++..+|-.|++++|.+-++...+ +.|+.. .|..+|.+
T Consensus 5 ~~ll~~g~L~~al~~~~~~VR~~-P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~---l~p~~~~~a~~yr~lI~a--- 77 (273)
T 1zbp_A 5 KNALSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIK---LFPEYLPGASQLRHLVKA--- 77 (273)
T ss_dssp HHHTTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH---HCGGGHHHHHHHHHHHHH---
T ss_pred HHHHhCCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH---hCchhhHHHHHHHHHHHH---
Confidence 34567889999999888888762 44677777888889999999999988887753 345533 33333332
Q ss_pred cCCHHHHH-HHHhhC--C--CCCCHHHHHHHHHHH--hcCCCHHHHHHHHHHHHccCCCCCcchH
Q 007808 445 AGRLAEAV-DFVKRM--P--IEADAVIWANLLGSC--RVYKNVELAELALERLTELEPKNPANFV 502 (589)
Q Consensus 445 ~g~~~~A~-~~~~~~--~--~~p~~~~~~~l~~~~--~~~g~~~~A~~~~~~~~~~~p~~~~~~~ 502 (589)
+... ++|.-- + +.....-...++.+. ...|+.++|.+.-.++.+..|..+...+
T Consensus 78 ----E~~R~~vfaG~~~P~~~g~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e~ap~~~G~~~ 138 (273)
T 1zbp_A 78 ----AQARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEKGFLAN 138 (273)
T ss_dssp ----HHHHHHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCCEEET
T ss_pred ----HHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCcccCCCcC
Confidence 2222 233321 1 111223334444443 4679999999999999998887665444
No 264
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=86.74 E-value=13 Score=31.11 Aligned_cols=159 Identities=9% Similarity=0.081 Sum_probs=92.4
Q ss_pred HccCCCCCeehHHHHHHHHHhCCCHHHHHHHHHhCCCCChhHHHHHHHHHhcCCChHHHHHHhcccCCCChhhHHHHHHH
Q 007808 158 FGEMDERNVVVWTSMINGYISCGDIVSARCLFELAPERDVILWNTIVSGYIDVRNMIEARKLFDQMPKKDVISWNTMLSG 237 (589)
Q Consensus 158 ~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~ 237 (589)
++.+..++.......+..+...|.....-.+.+.+..+|...-...+.++...|..+....+.+.+..++..+....+.+
T Consensus 20 i~~L~~~~~~vr~~A~~~L~~~~~~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~~~~~~~~L~~~l~d~~~~vr~~a~~a 99 (201)
T 3ltj_A 20 IKNLQDDSYYVRRAAAYALGKIGDERAVEPLIKALKDEDAWVRRAAADALGQIGDERAVEPLIKALKDEDGWVRQSAAVA 99 (201)
T ss_dssp HHHTTCSCHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHH
T ss_pred HHHhcCCCHHHHHHHHHHHHhcCChhHHHHHHHHHcCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 33344455555555666666666655555555666666776666667777777766555555555555777777777777
Q ss_pred HHhcCCHHHHHHHHhhCCCCCchhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHhcCChhHHHHH
Q 007808 238 YANNGDVEECKRLFEEMPERNVFSWNGLIGGYANNGLFFEVLDAFKRMLTEGRVFPNDATIVTVLSACARLGALDFSKWV 317 (589)
Q Consensus 238 ~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~ 317 (589)
+.+.++.+....+...+..++...-...+.++.+.++. ++...+..+... ++...-...+.++.+.++. .+...
T Consensus 100 L~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~-~~~~~L~~~l~d----~~~~vr~~A~~aL~~~~~~-~~~~~ 173 (201)
T 3ltj_A 100 LGQIGDERAVEPLIKALKDEDWFVRIAAAFALGEIGDE-RAVEPLIKALKD----EDGWVRQSAADALGEIGGE-RVRAA 173 (201)
T ss_dssp HHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHTCG-GGHHHHHHHTTC----SSHHHHHHHHHHHHHHCSH-HHHHH
T ss_pred HHHhCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCH-HHHHHHHHHHcC----CCHHHHHHHHHHHHHhCch-hHHHH
Confidence 77777765555555555556655555556666665543 344555555432 4555555556666666543 33333
Q ss_pred HHHHH
Q 007808 318 HVYAE 322 (589)
Q Consensus 318 ~~~~~ 322 (589)
+..+.
T Consensus 174 L~~~l 178 (201)
T 3ltj_A 174 MEKLA 178 (201)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 33333
No 265
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=84.78 E-value=13 Score=41.26 Aligned_cols=185 Identities=11% Similarity=0.076 Sum_probs=100.7
Q ss_pred HHHHHHhcCCChHHHHHHhcccCCCChhhHHHHHHHHHhcCCHHHHHHHHhhCCC------------------------C
Q 007808 202 TIVSGYIDVRNMIEARKLFDQMPKKDVISWNTMLSGYANNGDVEECKRLFEEMPE------------------------R 257 (589)
Q Consensus 202 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~------------------------~ 257 (589)
.++..+...+..+-+.++..-.. .+....-.+..++...|++++|.+.|.+... .
T Consensus 817 ~l~~~l~~~~~~~~~~~l~~~~~-~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~~~~ 895 (1139)
T 4fhn_B 817 ELVEKLFLFKQYNACMQLIGWLN-SDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYHHQ 895 (1139)
T ss_dssp HHHHHHHHHSCTTHHHHHHHHSC-CCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTTTSC
T ss_pred HHHHHHHHhhhHHHHHHHhhhcc-CCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhccccccccccccc
Confidence 34444555555555554443332 2222333344555566666666666655431 0
Q ss_pred C--chhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCC-c--HHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhH
Q 007808 258 N--VFSWNGLIGGYANNGLFFEVLDAFKRMLTEGRVFP-N--DATIVTVLSACARLGALDFSKWVHVYAEYNGYQGNVCV 332 (589)
Q Consensus 258 ~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p-~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 332 (589)
+ ..-|..++..+-+.|.++.+++.-...++.....+ + ...|..+.+.+...|++++|...+..+-..... ...
T Consensus 896 ~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~r--~~c 973 (1139)
T 4fhn_B 896 NLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPLK--KSC 973 (1139)
T ss_dssp CSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSSC--HHH
T ss_pred ccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHHH--HHH
Confidence 0 12256677778888888888887777666431111 1 124677788888888888888777666654432 334
Q ss_pred HHHHHHHHHhcCC------------hHHHHHHHhhCC------CCCcchHHHHHHHHHhCCChHHHHH-HHHHHHH
Q 007808 333 GNALIDMYAKCGI------------IENAVDVFNSMD------TKDLITWNTIISGLAMHGRGAGALS-LFHEMKN 389 (589)
Q Consensus 333 ~~~l~~~~~~~g~------------~~~A~~~~~~~~------~~~~~~~~~l~~~~~~~~~~~~A~~-~~~~m~~ 389 (589)
...|+...+..|. .++..+++..-. ...+.-|..|-.-+...|++.+|-. +|+.+.+
T Consensus 974 Lr~LV~~lce~~~~~~L~~lpf~gl~~~Vd~IL~~kAr~~~~~~~~p~Yy~iLYs~ri~r~dyR~AA~vmYe~~~R 1049 (1139)
T 4fhn_B 974 LLDFVNQLTKQGKINQLLNYSMPTLRQDVDNLLERKAFQMINVESQPCWYNILFSWRYKHQNYRDAAAIIYEKLSR 1049 (1139)
T ss_dssp HHHHHHHHHHHCCHHHHHHHTTTSCHHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCChhhhhCCCCccHHHHHHHHHHHHHHhCCccccCCCHHHHhHhhhhccCChHHHHHHHHHHHHH
Confidence 5555555554443 444445553211 1122335555555667777776544 5565544
No 266
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=84.38 E-value=31 Score=33.40 Aligned_cols=195 Identities=9% Similarity=0.008 Sum_probs=110.4
Q ss_pred CCHHHHHHHHhhCCC-----C----CchhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCcHHHHHHHHHH----HHhc
Q 007808 242 GDVEECKRLFEEMPE-----R----NVFSWNGLIGGYANNGLFFEVLDAFKRMLTEGRVFPNDATIVTVLSA----CARL 308 (589)
Q Consensus 242 ~~~~~A~~~~~~~~~-----~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~----~~~~ 308 (589)
|+++.|.+.+-.+.+ . .......++..|...|+++...+.+..+.+..+..+.. ...+++. ....
T Consensus 30 ~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~qlk~a--i~~~V~~~~~~l~~~ 107 (445)
T 4b4t_P 30 NDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLKLS--IQYMIQKVMEYLKSS 107 (445)
T ss_dssp HHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTSHHH--HHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhHHH--HHHHHHHHHHHHhcC
Confidence 677888777655432 1 23446678888889999998888777665543122222 2233332 2233
Q ss_pred CChhHHHHHHHHHHHc--CCC-----C---ChhHHHHHHHHHHhcCChHHHHHHHhhCCC----C-----CcchHHHHHH
Q 007808 309 GALDFSKWVHVYAEYN--GYQ-----G---NVCVGNALIDMYAKCGIIENAVDVFNSMDT----K-----DLITWNTIIS 369 (589)
Q Consensus 309 ~~~~~a~~~~~~~~~~--~~~-----~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~-----~~~~~~~l~~ 369 (589)
...+.... ...... .+. . .......|...|...|++.+|.+++..+.. . -+..+...+.
T Consensus 108 ~~~d~~~~--~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~r 185 (445)
T 4b4t_P 108 KSLDLNTR--ISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQME 185 (445)
T ss_dssp CTTHHHHH--HHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHH
T ss_pred CchhHHHH--HHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 33332211 111111 111 1 123445678889999999999999887751 1 1245666778
Q ss_pred HHHhCCChHHHHHHHHHHHH----CCCCCCH--hHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHH
Q 007808 370 GLAMHGRGAGALSLFHEMKN----AGEMPDG--ITFIGILCACTHMGLVEEGLSYFQSMAMDYSIVPQIEHYGCMVDLLA 443 (589)
Q Consensus 370 ~~~~~~~~~~A~~~~~~m~~----~~~~p~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 443 (589)
.|...+++.+|..++.+... ....|+. ..+...+..+...+++.+|.+ .|..+...+.
T Consensus 186 l~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~----------------~y~e~~~~~~ 249 (445)
T 4b4t_P 186 LSILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQ----------------YLQEIYQTDA 249 (445)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHH----------------HHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHH----------------HHHHHHhccc
Confidence 88889999999999888643 2112221 223444445555555555433 2444556666
Q ss_pred hcCCHHHHHHHHh
Q 007808 444 RAGRLAEAVDFVK 456 (589)
Q Consensus 444 ~~g~~~~A~~~~~ 456 (589)
..++.......+.
T Consensus 250 ~~~d~~~~~~~L~ 262 (445)
T 4b4t_P 250 IKSDEAKWKPVLS 262 (445)
T ss_dssp HHSCHHHHHHHHH
T ss_pred ccCCHHHHHHHHH
Confidence 6666655444443
No 267
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=83.98 E-value=9.9 Score=27.36 Aligned_cols=86 Identities=15% Similarity=0.103 Sum_probs=54.3
Q ss_pred ChhHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHhhCCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHH
Q 007808 310 ALDFSKWVHVYAEYNGYQGNVCVGNALIDMYAKCGIIENAVDVFNSMDTKDLITWNTIISGLAMHGRGAGALSLFHEMKN 389 (589)
Q Consensus 310 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~ 389 (589)
..++|..|-+.+...+. ...+--.-+..+...|++++|..+.+...-||...|-.|-. .+.|-.+++...+.++..
T Consensus 21 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la~ 96 (115)
T 2uwj_G 21 CHEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGNPWPALEPWFALCE--WHLGLGAALDRRLAGLGG 96 (115)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTCCCGGGHHHHHHHH--HHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHHh
Confidence 34455555555554432 11111122344667888999988888888888888876643 467777888888877777
Q ss_pred CCCCCCHhHHH
Q 007808 390 AGEMPDGITFI 400 (589)
Q Consensus 390 ~~~~p~~~~~~ 400 (589)
+| .|....|.
T Consensus 97 sg-~p~~q~Fa 106 (115)
T 2uwj_G 97 SS-DPALADFA 106 (115)
T ss_dssp CS-SHHHHHHH
T ss_pred CC-CHHHHHHH
Confidence 66 55555543
No 268
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=83.65 E-value=6.7 Score=43.56 Aligned_cols=63 Identities=6% Similarity=-0.165 Sum_probs=34.0
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHccCCCCCc-----chHHHHHHHhhcCChHHHHHHHHHhhhCC
Q 007808 466 IWANLLGSCRVYKNVELAELALERLTELEPKNPA-----NFVMLSNIYGDLGRWKDVARIKVAMRDTG 528 (589)
Q Consensus 466 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~-----~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 528 (589)
-|..++..+.+.|.++.+.+..+.+++..+.+.. .|..+.+.+...|+|++|...+-.+.+..
T Consensus 901 YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~ 968 (1139)
T 4fhn_B 901 YYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTP 968 (1139)
T ss_dssp HHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSS
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHH
Confidence 3444555556666666666666666653322111 34555555666666666666655554433
No 269
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=83.35 E-value=11 Score=27.25 Aligned_cols=85 Identities=16% Similarity=0.185 Sum_probs=51.9
Q ss_pred hhHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHhhCCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHHC
Q 007808 311 LDFSKWVHVYAEYNGYQGNVCVGNALIDMYAKCGIIENAVDVFNSMDTKDLITWNTIISGLAMHGRGAGALSLFHEMKNA 390 (589)
Q Consensus 311 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~ 390 (589)
.++|..|-+.+...+. ...+--.-+..+...|++++|..+.+...-||...|-.|-. .+.|-.+++...+.++..+
T Consensus 23 HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la~s 98 (116)
T 2p58_C 23 HEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKLAYPDLEPWLALCE--YRLGLGSALESRLNRLARS 98 (116)
T ss_dssp HHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTSCCGGGHHHHHHHH--HHHTCHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHHhC
Confidence 4455555555554432 11111122334567888888888888888888888876644 4557777777777777766
Q ss_pred CCCCCHhHHH
Q 007808 391 GEMPDGITFI 400 (589)
Q Consensus 391 ~~~p~~~~~~ 400 (589)
| .|....|.
T Consensus 99 g-~p~~q~Fa 107 (116)
T 2p58_C 99 Q-DPRIQTFV 107 (116)
T ss_dssp C-CHHHHHHH
T ss_pred C-CHHHHHHH
Confidence 5 55544443
No 270
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=82.95 E-value=7 Score=30.05 Aligned_cols=63 Identities=11% Similarity=0.150 Sum_probs=50.2
Q ss_pred ChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHH
Q 007808 376 RGAGALSLFHEMKNAGEMPDGITFIGILCACTHMGLVEEGLSYFQSMAMDYSIVPQIEHYGCMVD 440 (589)
Q Consensus 376 ~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~ 440 (589)
|.-+...-++.+....+.|++......+.+|.+.+++..|..+++.+..+.+ +...+|..+++
T Consensus 68 D~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~~--~~~~iY~y~lq 130 (152)
T 2y69_E 68 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAG--PHKEIYPYVIQ 130 (152)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTT--TCTTHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcC--CchhhHHHHHH
Confidence 3445666777777788999999999999999999999999999999876544 44556777664
No 271
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=81.10 E-value=50 Score=33.49 Aligned_cols=170 Identities=9% Similarity=-0.058 Sum_probs=97.0
Q ss_pred CChHHHHHHHhhCCC---CCcc----hHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCcHHHHH
Q 007808 344 GIIENAVDVFNSMDT---KDLI----TWNTIISGLAMHGRGAGALSLFHEMKNAGEMPDGITFIGILCACTHMGLVEEGL 416 (589)
Q Consensus 344 g~~~~A~~~~~~~~~---~~~~----~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~ 416 (589)
.+.+.|...+....+ .+.. .+..++..+...+...++...+...... .++.....-.+....+.|+++.|.
T Consensus 228 ~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~e~~~r~Alr~~d~~~a~ 305 (618)
T 1qsa_A 228 QDAENARLMIPSLAQAQQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMR--SQSTSLIERRVRMALGTGDRRGLN 305 (618)
T ss_dssp HCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHT--CCCHHHHHHHHHHHHHHTCHHHHH
T ss_pred cCHHHHHHHHHhhhhccCCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhcccc--CCChHHHHHHHHHHHHCCCHHHHH
Confidence 478899999876642 1222 2333333344455456777777776653 344444444555555779999999
Q ss_pred HHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHccCCC
Q 007808 417 SYFQSMAMDYSIVPQIEHYGCMVDLLARAGRLAEAVDFVKRMPIEADAVIWANLLGSCRVYKNVELAELALERLTELEPK 496 (589)
Q Consensus 417 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 496 (589)
..|+.+... ......-.-.+..++...|+.++|..+|+++.... +|..++.+ .+.|..-. . ......+.
T Consensus 306 ~~~~~l~~~--~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~~~---~fYg~lAa-~~Lg~~~~-~----~~~~~~~~ 374 (618)
T 1qsa_A 306 TWLARLPME--AKEKDEWRYWQADLLLERGREAEAKEILHQLMQQR---GFYPMVAA-QRIGEEYE-L----KIDKAPQN 374 (618)
T ss_dssp HHHHHSCTT--GGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC---SHHHHHHH-HHTTCCCC-C----CCCCCCSC
T ss_pred HHHHHcccc--ccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhcCC---ChHHHHHH-HHcCCCCC-C----CCCCCChh
Confidence 999998542 11223334457788889999999999999984222 33333322 12232100 0 00011111
Q ss_pred CCc-----chHHHHHHHhhcCChHHHHHHHHHhhh
Q 007808 497 NPA-----NFVMLSNIYGDLGRWKDVARIKVAMRD 526 (589)
Q Consensus 497 ~~~-----~~~~l~~~~~~~g~~~~A~~~~~~~~~ 526 (589)
... .-...+..+...|...+|...+..+.+
T Consensus 375 ~~~~~~~~~~~~r~~~L~~~g~~~~a~~ew~~~~~ 409 (618)
T 1qsa_A 375 VDSALTQGPEMARVRELMYWNLDNTARSEWANLVK 409 (618)
T ss_dssp CCCHHHHSHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHhhhccChHHHHHHHHHHCCChhhHHHHHHHHHh
Confidence 111 123345667888999998888777653
No 272
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=80.43 E-value=6.3 Score=30.29 Aligned_cols=63 Identities=11% Similarity=0.127 Sum_probs=50.4
Q ss_pred ChhHHHHHHHHhhhCCCCCCcccHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchHHHhHHHH
Q 007808 80 FHRTVVVLFTQMKKLDAMPNCFTFPIVLKSCVKINALREGEELHCLVLKNGFRANIFVGTALIE 143 (589)
Q Consensus 80 ~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 143 (589)
+.-+..+-++.+...++.|++......+++|.+.+|+..|.++++-.+..- .+...+|..+++
T Consensus 68 D~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~-~~~~~iY~y~lq 130 (152)
T 2y69_E 68 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA-GPHKEIYPYVIQ 130 (152)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTCTTHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhc-CCchhhHHHHHH
Confidence 344567777888888899999999999999999999999999999887653 444556776654
No 273
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=79.17 E-value=15 Score=26.39 Aligned_cols=78 Identities=8% Similarity=-0.089 Sum_probs=55.2
Q ss_pred cCChHHHHHHHHHHHHhCCCCchHHHhHHHHHHHcCCChHHHHHHHccCCCCCeehHHHHHHHHHhCCCHHHHHHHHHhC
Q 007808 113 INALREGEELHCLVLKNGFRANIFVGTALIELYSTGKAIEAAYKVFGEMDERNVVVWTSMINGYISCGDIVSARCLFELA 192 (589)
Q Consensus 113 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 192 (589)
....++|..+-+.+...+. ...+--+-+..+...|++++|..+.+....||...|.+|.. .+.|.-+++...+..+
T Consensus 19 ~H~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~l 94 (115)
T 2uwj_G 19 QHCHEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGNPWPALEPWFALCE--WHLGLGAALDRRLAGL 94 (115)
T ss_dssp TTCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTCCCGGGHHHHHHHH--HHTTCHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHH
Confidence 3567888888888777653 33333333455677899999999999999899888877765 4677777777766444
Q ss_pred CC
Q 007808 193 PE 194 (589)
Q Consensus 193 ~~ 194 (589)
..
T Consensus 95 a~ 96 (115)
T 2uwj_G 95 GG 96 (115)
T ss_dssp HT
T ss_pred Hh
Confidence 33
No 274
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=78.67 E-value=16 Score=26.34 Aligned_cols=79 Identities=8% Similarity=-0.029 Sum_probs=55.4
Q ss_pred cCChHHHHHHHHHHHHhCCCCchHHHhHHHHHHHcCCChHHHHHHHccCCCCCeehHHHHHHHHHhCCCHHHHHHHHHhC
Q 007808 113 INALREGEELHCLVLKNGFRANIFVGTALIELYSTGKAIEAAYKVFGEMDERNVVVWTSMINGYISCGDIVSARCLFELA 192 (589)
Q Consensus 113 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 192 (589)
....++|..+-+.+...+. ...+--+-+..+...|++++|..+.+...-||...|.+|... +.|.-+++...+..+
T Consensus 20 ~H~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce~--rlGl~s~le~rL~~l 95 (116)
T 2p58_C 20 NHYHEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKLAYPDLEPWLALCEY--RLGLGSALESRLNRL 95 (116)
T ss_dssp TTCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTSCCGGGHHHHHHHHH--HHTCHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHHH--hcccHHHHHHHHHHH
Confidence 3567888888888777653 333333334556778999999999999998898888777654 567777777776444
Q ss_pred CCC
Q 007808 193 PER 195 (589)
Q Consensus 193 ~~~ 195 (589)
...
T Consensus 96 a~s 98 (116)
T 2p58_C 96 ARS 98 (116)
T ss_dssp TTC
T ss_pred HhC
Confidence 433
No 275
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=74.49 E-value=14 Score=35.65 Aligned_cols=95 Identities=12% Similarity=-0.020 Sum_probs=55.1
Q ss_pred HHHHHHHHHHhcCChHHHHHHHhhCCC------CCcchHHHHHHHHHhCCChHHHHHHHHHHHH---CCCCCCHhHH--H
Q 007808 332 VGNALIDMYAKCGIIENAVDVFNSMDT------KDLITWNTIISGLAMHGRGAGALSLFHEMKN---AGEMPDGITF--I 400 (589)
Q Consensus 332 ~~~~l~~~~~~~g~~~~A~~~~~~~~~------~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~---~~~~p~~~~~--~ 400 (589)
+...+...|.+.|++++|.+.|.++.. .-...+-..+..+...+++..+...+.+... .+-.|+.... .
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk~ 212 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYKT 212 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHHH
Confidence 455677777777777777777776652 1234556666677777777777777776543 2222222211 1
Q ss_pred HHHHHHhccCcHHHHHHHHHHhHHhc
Q 007808 401 GILCACTHMGLVEEGLSYFQSMAMDY 426 (589)
Q Consensus 401 ~l~~~~~~~g~~~~A~~~~~~~~~~~ 426 (589)
.-+..+...+++..|.+.|-++...+
T Consensus 213 ~~gl~~l~~r~f~~Aa~~f~e~~~t~ 238 (429)
T 4b4t_R 213 YYGIHCLAVRNFKEAAKLLVDSLATF 238 (429)
T ss_dssp HHHHGGGGTSCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHhChHHHHHHHHHHHhccC
Confidence 11222345577777777777776543
No 276
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=73.12 E-value=25 Score=29.41 Aligned_cols=29 Identities=14% Similarity=-0.017 Sum_probs=14.3
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHcc
Q 007808 465 VIWANLLGSCRVYKNVELAELALERLTEL 493 (589)
Q Consensus 465 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 493 (589)
..|......+...|++++|.++|+..++.
T Consensus 116 lfYe~wA~~lE~~g~~~~A~~Vy~~GI~~ 144 (202)
T 3esl_A 116 LFYEEFSKLLENAQFFLEAKVLLELGAEN 144 (202)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 33444444444555555555555555543
No 277
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=72.42 E-value=22 Score=34.83 Aligned_cols=66 Identities=12% Similarity=0.124 Sum_probs=43.4
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHhhCCCCC----CH--HHHH-HHHHHHhcCCCHHHHHHHHHHHHccCCCC
Q 007808 432 IEHYGCMVDLLARAGRLAEAVDFVKRMPIEA----DA--VIWA-NLLGSCRVYKNVELAELALERLTELEPKN 497 (589)
Q Consensus 432 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p----~~--~~~~-~l~~~~~~~g~~~~A~~~~~~~~~~~p~~ 497 (589)
...+|.++..|...+.++.|..+..+..++. +. ..|. .++..+.-++++.+|.+.+..+++.-|.+
T Consensus 231 a~l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rkap~~ 303 (523)
T 4b4t_S 231 AMLINLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRKAPHN 303 (523)
T ss_dssp HHHHHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSSCSCS
T ss_pred HHHHHHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcc
Confidence 4567777788888888888888888774321 11 2222 23355667788888888888887766653
No 278
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=68.19 E-value=30 Score=30.86 Aligned_cols=134 Identities=10% Similarity=-0.008 Sum_probs=59.6
Q ss_pred HHHHHHHHHhCCCCCccchHHHHHHHHccCChhHHHHHhhcCCCCCcccHHHHHHHHHcCCChhHHHHHHHHhhhCCCCC
Q 007808 19 HQIQTQVVTSGLEKSDYITPRIITACAQLKQMTYARKMFDKITDQNVVSWNAMFNGYAQNEFHRTVVVLFTQMKKLDAMP 98 (589)
Q Consensus 19 ~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p 98 (589)
..+...+.+.++......-.+.+...++.|+.+.+..+++....++...-.+.+...+..|+.+-+. .+.+.|..+
T Consensus 13 ~~v~~lL~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~g~t~L~~A~~~g~~~~v~----~Ll~~ga~~ 88 (285)
T 3kea_A 13 KQLKSFLSSKDTFKADVHGHSASYYAIADNNVRLVCTLLNAGALKNLLENEFPLHQAATLEDTKIVK----ILLFSGLDD 88 (285)
T ss_dssp HHHHHHHHSTTTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTGGGSCCTTCCHHHHHTTSSSCHHHH----HHHHTTCCT
T ss_pred HHHHHHHHhCCCCccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCHHHHHHHcCCHHHHH----HHHHCCCCC
Confidence 3444444444432222222344555566777777777776644332221123344444556554333 333344443
Q ss_pred Ccc---cHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchHH---HhHHHHHHHcCCChHHHHHHHccC
Q 007808 99 NCF---TFPIVLKSCVKINALREGEELHCLVLKNGFRANIFV---GTALIELYSTGKAIEAAYKVFGEM 161 (589)
Q Consensus 99 ~~~---~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~---~~~li~~~~~~g~~~~A~~~~~~~ 161 (589)
+.. -.+.| ...+..|+.+ +.+.+++.|..++... +...+...+..|+.+-+.-+++.-
T Consensus 89 ~~~d~~g~t~L-~~A~~~g~~~----~v~~Ll~~ga~~~~~~~~g~~t~L~~A~~~~~~~~v~~Ll~~g 152 (285)
T 3kea_A 89 SQFDDKGNTAL-YYAVDSGNMQ----TVKLFVKKNWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEI 152 (285)
T ss_dssp TCCCTTSCCHH-HHHHHTTCHH----HHHHHHHHCGGGGGCSSSGGGSHHHHHHHTTCHHHHHHHHTTS
T ss_pred CCcCCCCCcHH-HHHHHcCCHH----HHHHHHhcCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHhCC
Confidence 322 22222 3333445543 3344444454443221 123344445556665555555443
No 279
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=67.19 E-value=67 Score=28.35 Aligned_cols=146 Identities=9% Similarity=-0.090 Sum_probs=67.7
Q ss_pred CCccchHHHHHHHHccCChhHHHHHhhcCCCCCcccHHHHHHHHHcCCChh----HHHHHHHHhhhCCCCCCcccHHHHH
Q 007808 32 KSDYITPRIITACAQLKQMTYARKMFDKITDQNVVSWNAMFNGYAQNEFHR----TVVVLFTQMKKLDAMPNCFTFPIVL 107 (589)
Q Consensus 32 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~----~a~~~~~~m~~~~~~p~~~~~~~ll 107 (589)
++..+-...+..+.+.|..+....+.+.+..++...-...+.++.+.|... ..+.++..+... .++...-...+
T Consensus 35 ~~~~vr~~A~~~L~~~~~~~~~~~L~~~l~d~~~~vR~~A~~aL~~l~~~~~~~~~l~~~L~~~~~~--d~~~~vr~~a~ 112 (280)
T 1oyz_A 35 HNSLKRISSARVLQLRGGQDAVRLAIEFCSDKNYIRRDIGAFILGQIKICKKCEDNVFNILNNMALN--DKSACVRATAI 112 (280)
T ss_dssp SSHHHHHHHHHHHHHHCCHHHHHHHHHHHTCSSHHHHHHHHHHHHHSCCCTTTHHHHHHHHHHHHHH--CSCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHccCCchHHHHHHHHHcCCCHHHHHHHHHHHHHhccccccchHHHHHHHHHHhc--CCCHHHHHHHH
Confidence 455555556666666665444444444444566555555666666666332 233344322111 24444444555
Q ss_pred HHHhccCC--hHHHHHHHHHHHHhCCCCchHHHhHHHHHHHcCCChHHHHHHHccCCCCCeehHHHHHHHHHhC
Q 007808 108 KSCVKINA--LREGEELHCLVLKNGFRANIFVGTALIELYSTGKAIEAAYKVFGEMDERNVVVWTSMINGYISC 179 (589)
Q Consensus 108 ~~~~~~~~--~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~ 179 (589)
.++...+. ......+...+.+.=-.++..+-...+.++...|+.+....+.+.+..++...-...+.++...
T Consensus 113 ~aL~~l~~~~~~~~~~~~~~L~~~l~d~~~~vR~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~ 186 (280)
T 1oyz_A 113 ESTAQRCKKNPIYSPKIVEQSQITAFDKSTNVRRATAFAISVINDKATIPLLINLLKDPNGDVRNWAAFAININ 186 (280)
T ss_dssp HHHHHHHHHCGGGHHHHHHHHHHHTTCSCHHHHHHHHHHHHTC---CCHHHHHHHHTCSSHHHHHHHHHHHHHH
T ss_pred HHHHHHhccCCcccHHHHHHHHHHhhCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHcCCCHHHHHHHHHHHHhh
Confidence 55554431 1111222333333223567777777777777776643333333333344444444444444443
No 280
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=65.27 E-value=45 Score=26.40 Aligned_cols=47 Identities=6% Similarity=0.021 Sum_probs=28.9
Q ss_pred HHHHHHHHHc--cCCCCCcchHHHHHHHhhcCChHHHHHHHHHhhhCCC
Q 007808 483 AELALERLTE--LEPKNPANFVMLSNIYGDLGRWKDVARIKVAMRDTGF 529 (589)
Q Consensus 483 A~~~~~~~~~--~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 529 (589)
+.++|+.+.. +.-..+..|...+..+...|++.+|.++++.-.+.+-
T Consensus 84 p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A 132 (152)
T 4a1g_A 84 LHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQA 132 (152)
T ss_dssp HHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Confidence 5566666655 3344455666666667777777777777666654443
No 281
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=64.35 E-value=37 Score=33.37 Aligned_cols=56 Identities=16% Similarity=0.067 Sum_probs=47.3
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHccCCCCCcchHHHHHHHhhcCChHHHHHHHHHhh
Q 007808 470 LLGSCRVYKNVELAELALERLTELEPKNPANFVMLSNIYGDLGRWKDVARIKVAMR 525 (589)
Q Consensus 470 l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 525 (589)
++....-...++.|...|.++..+.|++...|+.|+.+....|+.-+|.-.|-+..
T Consensus 158 LGDL~RY~~~~~~A~~~Y~~A~~~~P~~G~~~nqLavla~~~~~~l~a~y~y~rsl 213 (497)
T 1ya0_A 158 LGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSI 213 (497)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHhcccccHHHHHHHHHHH
Confidence 44445556678999999999999999999999999999999999888888776664
No 282
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=64.06 E-value=1.3e+02 Score=30.67 Aligned_cols=80 Identities=6% Similarity=-0.079 Sum_probs=37.7
Q ss_pred HHHHHhcCCChHHHHHHhcccCCCChhhHHHHHHHHHhcCCHHHHHHHHhhCCCCCchhHHHHHHHHHh---CCChHHHH
Q 007808 203 IVSGYIDVRNMIEARKLFDQMPKKDVISWNTMLSGYANNGDVEECKRLFEEMPERNVFSWNGLIGGYAN---NGLFFEVL 279 (589)
Q Consensus 203 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~---~g~~~~A~ 279 (589)
...++.-.|+++.|++.+-.....+.+.+...+ ...|-+..-..++..-......-+..||..|.+ ..+..+|+
T Consensus 300 Yf~vLlLtgqFE~AI~~L~~~~~vdAVH~AIaL---~~~gLL~~~~~lls~~~~~~~lN~arLI~~Yt~~F~~td~~~Al 376 (661)
T 2qx5_A 300 YLQTLLLSGLYGLAIDYTYTFSEMDAVHLAIGL---ASLKLFKIDSSTRLTKKPKRDIRFANILANYTKSFRYSDPRVAV 376 (661)
T ss_dssp HHHHHHHTTCHHHHHHHHHTTCHHHHHHHHHHH---HHTTC-----------------CHHHHHHHHHTTTTTTCHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHhcCchhHHHHHHHH---HHcCCccCCCcccccCCCcccccHHHHHHHHHHHhhcCCHHHHH
Confidence 344556678888888887765222333332222 223333321111111000112235667777765 47888888
Q ss_pred HHHHHH
Q 007808 280 DAFKRM 285 (589)
Q Consensus 280 ~~~~~~ 285 (589)
++|--+
T Consensus 377 ~Y~~li 382 (661)
T 2qx5_A 377 EYLVLI 382 (661)
T ss_dssp HHHHGG
T ss_pred HHHHHH
Confidence 887776
No 283
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=62.16 E-value=65 Score=30.95 Aligned_cols=62 Identities=13% Similarity=0.029 Sum_probs=44.6
Q ss_pred hHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCC--cHHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 007808 261 SWNGLIGGYANNGLFFEVLDAFKRMLTEGRVFP--NDATIVTVLSACARLGALDFSKWVHVYAEY 323 (589)
Q Consensus 261 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 323 (589)
++..+...|.+.|++++|.+.|.++.... ..+ -...+...++.+...+++..+...+.++..
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~-~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~ 196 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKA-ISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNS 196 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHH-TCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhc-CChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 55667888888888888888888887653 222 244566777777778888888777776643
No 284
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=56.54 E-value=57 Score=26.20 Aligned_cols=29 Identities=7% Similarity=0.061 Sum_probs=14.0
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHcc
Q 007808 465 VIWANLLGSCRVYKNVELAELALERLTEL 493 (589)
Q Consensus 465 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 493 (589)
..|......+-..|++.+|.++|+..++.
T Consensus 97 lfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~ 125 (164)
T 2wvi_A 97 QFYISWAEEYEARENFRKADAIFQEGIQQ 125 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 33434444444455555555555555543
No 285
>3bqo_A Telomeric repeat-binding factor 1; TRF1 TRFH domain dimerization domain TIN2, ADP-ribosylation, alternative splicing, cell cycle, cell division; 2.00A {Homo sapiens} SCOP: a.146.1.1 PDB: 3l82_A 1h6o_A
Probab=55.74 E-value=37 Score=28.08 Aligned_cols=72 Identities=17% Similarity=0.081 Sum_probs=41.2
Q ss_pred HHHHHHHHhhCCCCCCH--HHHH-----HHHHHHhcCCCHHHHHHHHHHHHccCCCCCcchHHHHHHHhhcCChHHHHH
Q 007808 448 LAEAVDFVKRMPIEADA--VIWA-----NLLGSCRVYKNVELAELALERLTELEPKNPANFVMLSNIYGDLGRWKDVAR 519 (589)
Q Consensus 448 ~~~A~~~~~~~~~~p~~--~~~~-----~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 519 (589)
++-|+.+|+.+...-+. .... ..+..|.+.|.+++|.+++++..+-+|.+...-..|..+-.+..-+..-++
T Consensus 94 LESAl~v~~~I~~e~~~lheei~~Llk~qAV~VCiekg~Fk~A~eiLkr~f~~~~~~~~lr~kL~~II~~Kd~~H~~lq 172 (211)
T 3bqo_A 94 LESALMIWGSIEKEHDKLHEEIQNLIKIQAIAVCMENGNFKEAEEVFERIFGDPNSHMPFKSKLLMIISQKDTFHSFFQ 172 (211)
T ss_dssp HHHHHHHHTTSCSCCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHC-----CCTTHHHHHHHHHTTCTTCHHHH
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHhcCCCCchHHHHHHHHHHHccCCCcHHHH
Confidence 45677777777422221 1111 223568888889999999888888777766666666666665555554444
No 286
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=53.60 E-value=54 Score=25.07 Aligned_cols=64 Identities=16% Similarity=0.251 Sum_probs=41.0
Q ss_pred HHHHHHHHHhcCChHHHHHHHhhCCCCCc---chHHHHHHHHHhCCC--hHHHHHHHHHHHHCCCCCCH
Q 007808 333 GNALIDMYAKCGIIENAVDVFNSMDTKDL---ITWNTIISGLAMHGR--GAGALSLFHEMKNAGEMPDG 396 (589)
Q Consensus 333 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~l~~~~~~~~~--~~~A~~~~~~m~~~~~~p~~ 396 (589)
...++.-|...|+.++|.+.++++..|.. .+...+..++-+.++ .+.+..++..+...|+-+..
T Consensus 10 i~~ll~EY~~~~D~~Ea~~cl~eL~~p~f~~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~is~~ 78 (129)
T 2nsz_A 10 IDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITID 78 (129)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCCCccHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCHH
Confidence 35577778888888888888888876522 233444444544432 35577778888777655443
No 287
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=50.73 E-value=1.7e+02 Score=27.66 Aligned_cols=284 Identities=13% Similarity=0.021 Sum_probs=141.0
Q ss_pred HHHHHHHHhcCCHHHHHHHHhhCCC--------CCchhHHHHHHHHHhC-CChHHHHHHHHHHHH----cCCCCCcHHHH
Q 007808 232 NTMLSGYANNGDVEECKRLFEEMPE--------RNVFSWNGLIGGYANN-GLFFEVLDAFKRMLT----EGRVFPNDATI 298 (589)
Q Consensus 232 ~~l~~~~~~~~~~~~A~~~~~~~~~--------~~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~----~~~~~p~~~~~ 298 (589)
..+...|.+.|+.++..+++..... .....-..++..+... +..+.-+++..+.++ +.+.-.....=
T Consensus 23 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~~r~flr~~l~ 102 (394)
T 3txn_A 23 LQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQEKRTFLRQSLE 102 (394)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455556666666666666555543 1122234455555443 223333444444433 22011111122
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHcCCCCC-----hhHHHHHHHHHHhcCChHHHHHHHhhCC------CCCcchHH--
Q 007808 299 VTVLSACARLGALDFSKWVHVYAEYNGYQGN-----VCVGNALIDMYAKCGIIENAVDVFNSMD------TKDLITWN-- 365 (589)
Q Consensus 299 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~------~~~~~~~~-- 365 (589)
..++..|...|++.+|..++..+.+.=-..+ ..++-.-+..|...+++.++...+.... .+++....
T Consensus 103 ~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~a~i 182 (394)
T 3txn_A 103 ARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQGAL 182 (394)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHHHHH
Confidence 3577788899999999888888776421111 3345556677888889888887776543 12222211
Q ss_pred --HHHHHHH-hCCChHHHHHHHHHHHHC--CC-CCC---HhHHHHHHHHHhccCcHHHHHHHH-HHhHHhcCCCCChHHH
Q 007808 366 --TIISGLA-MHGRGAGALSLFHEMKNA--GE-MPD---GITFIGILCACTHMGLVEEGLSYF-QSMAMDYSIVPQIEHY 435 (589)
Q Consensus 366 --~l~~~~~-~~~~~~~A~~~~~~m~~~--~~-~p~---~~~~~~l~~~~~~~g~~~~A~~~~-~~~~~~~~~~~~~~~~ 435 (589)
.-.-.+. ..++|..|...|-+..+. .. .|. ...|..+.... . ++..+-..++ ......+ ..|+...+
T Consensus 183 ~~~~Gi~~l~~~rdyk~A~~~F~eaf~~f~~~~~~~~~~~lkYlvL~aLl-~-~~r~el~~~l~~~~~~~~-~~pei~~l 259 (394)
T 3txn_A 183 DLQSGILHAADERDFKTAFSYFYEAFEGFDSVDSVKALTSLKYMLLCKIM-L-GQSDDVNQLVSGKLAITY-SGRDIDAM 259 (394)
T ss_dssp HHHHHHHHHHTTSCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHH-T-TCGGGHHHHHHSHHHHTT-CSHHHHHH
T ss_pred HHHhhHHHHHhccCHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHH-c-CCHHHHHHHhcccccccc-CCccHHHH
Confidence 1222355 688898888877766431 01 111 11232222222 2 2211211222 1111111 23555556
Q ss_pred HHHHHHHHhcCCHHHHHHHHhhCC--CCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHccCCCCCcchHHHHHHHhhcCC
Q 007808 436 GCMVDLLARAGRLAEAVDFVKRMP--IEADAVIWANLLGSCRVYKNVELAELALERLTELEPKNPANFVMLSNIYGDLGR 513 (589)
Q Consensus 436 ~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 513 (589)
..++.+| ..+++.+...+++... +..|......+-..+.+ -. ...+.++ ..|-..-....++..+.- .
T Consensus 260 ~~L~~a~-~~~dl~~f~~iL~~~~~~l~~D~~l~~h~~~L~~~--Ir---~~~L~~i--~~pYsrIsl~~iA~~l~l--s 329 (394)
T 3txn_A 260 KSVAEAS-HKRSLADFQAALKEYKKELAEDVIVQAHLGTLYDT--ML---EQNLCRI--IEPYSRVQVAHVAESIQL--P 329 (394)
T ss_dssp HHHHHHH-HTTCHHHHHHHHHHSTTTTTTSHHHHHHHHHHHHH--HH---HHHHHHH--HTTCSEEEHHHHHHHHTC--C
T ss_pred HHHHHHH-HhCCHHHHHHHHHHHHHHHhcChHHHHHHHHHHHH--HH---HHHHHHH--hHhhceeeHHHHHHHHCc--C
Confidence 6666665 5667777777777652 34454321111111000 00 0111111 346655566666666654 6
Q ss_pred hHHHHHHHHHhhhCC
Q 007808 514 WKDVARIKVAMRDTG 528 (589)
Q Consensus 514 ~~~A~~~~~~~~~~~ 528 (589)
.++++..+-+|...|
T Consensus 330 ~~evE~~L~~lI~dg 344 (394)
T 3txn_A 330 MPQVEKKLSQMILDK 344 (394)
T ss_dssp HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHCC
Confidence 788999999997655
No 288
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=50.10 E-value=56 Score=28.23 Aligned_cols=30 Identities=17% Similarity=0.209 Sum_probs=19.4
Q ss_pred CCChHHHHHHHHHHHhcCCHHHHHHHHhhC
Q 007808 429 VPQIEHYGCMVDLLARAGRLAEAVDFVKRM 458 (589)
Q Consensus 429 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 458 (589)
.++.......+..+.+.|+.++|.++|-+.
T Consensus 88 ~~~~~~~r~~v~~L~rLg~~~~A~~lfL~~ 117 (235)
T 2d2s_A 88 SNEIVHLKSGTENMIKLGLPEQALDLFLQN 117 (235)
T ss_dssp CSSHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHCCChhHHHHHHHHH
Confidence 344555555667777788888887776543
No 289
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=49.98 E-value=1.7e+02 Score=27.67 Aligned_cols=204 Identities=13% Similarity=0.113 Sum_probs=89.2
Q ss_pred HHHHHHccCChhHHHHHhhcCCCCCccc--HHHHHHHHHcCCChhHHHHHHHHhhhCCCCCCc---ccHHHHHHHHhccC
Q 007808 40 IITACAQLKQMTYARKMFDKITDQNVVS--WNAMFNGYAQNEFHRTVVVLFTQMKKLDAMPNC---FTFPIVLKSCVKIN 114 (589)
Q Consensus 40 l~~~~~~~~~~~~A~~~~~~~~~~~~~~--~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~---~~~~~ll~~~~~~~ 114 (589)
.+...++.|+++-+..+++....++... ..+.+...+..|+.+-+.-+++ .|..++. .-. +.+...+..|
T Consensus 17 ~L~~Aa~~g~~~~v~~Ll~~g~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~----~g~~~~~~~~~g~-t~L~~A~~~g 91 (437)
T 1n11_A 17 PLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQ----NKAKVNAKAKDDQ-TPLHCAARIG 91 (437)
T ss_dssp HHHHHHHHTCHHHHHHHHHTTCCSCCSSSCCCCHHHHHHHHTCHHHHHHHHH----HTCCSSCCCTTSC-CHHHHHHHHT
T ss_pred HHHHHHHCCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHh----CCCCCCCCCCCCC-CHHHHHHHCC
Confidence 4555556777777777776654433221 1123334445566554443333 3332222 112 2233334455
Q ss_pred ChHHHHHHHHHHHHhCCCCchH--HHhHHHHHHHcCCChHHHHHHHccCCCCCee--hHHHHHHHHHhCCCHHHHHHHHH
Q 007808 115 ALREGEELHCLVLKNGFRANIF--VGTALIELYSTGKAIEAAYKVFGEMDERNVV--VWTSMINGYISCGDIVSARCLFE 190 (589)
Q Consensus 115 ~~~~a~~~~~~~~~~~~~~~~~--~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~l~~~~~~~g~~~~a~~~~~ 190 (589)
+.+ +.+.+++.|..++.. .....+...+..|+.+-+..+++.-...+.. .-.+.+...+..|+.+-+..+++
T Consensus 92 ~~~----~v~~Ll~~ga~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~ 167 (437)
T 1n11_A 92 HTN----MVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEKEASQACMTKKGFTPLHVAAKYGKVRVAELLLE 167 (437)
T ss_dssp CHH----HHHHHHHHTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHH
T ss_pred CHH----HHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCcCCCCCCCCHHHHHHHcCCHHHHHHHHh
Confidence 543 444455555544321 1122333445566666666666543321110 00112334445566665555555
Q ss_pred hCCCCChh--HHHHHHHHHhcCCChHHHHHHhcccCCCCh---hhHHHHHHHHHhcCCHHHHHHHHhh
Q 007808 191 LAPERDVI--LWNTIVSGYIDVRNMIEARKLFDQMPKKDV---ISWNTMLSGYANNGDVEECKRLFEE 253 (589)
Q Consensus 191 ~~~~~~~~--~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~A~~~~~~ 253 (589)
....++.. .-...+...+..|+.+-+..+++.-..++. ..+ +.+...+..|+.+-+..+++.
T Consensus 168 ~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~-t~L~~A~~~~~~~~~~~Ll~~ 234 (437)
T 1n11_A 168 RDAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGY-TPLHIAAKQNQVEVARSLLQY 234 (437)
T ss_dssp TTCCTTCCCSSCCCHHHHHHHTTCHHHHHHHGGGTCCSCCCCTTCC-CHHHHHHHTTCHHHHHHHHHT
T ss_pred CCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCcCCCCC-CHHHHHHHcCCHHHHHHHHHc
Confidence 43322110 001122333455666555555554332211 111 223344456666666555554
No 290
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=45.57 E-value=1.2e+02 Score=24.54 Aligned_cols=80 Identities=15% Similarity=0.131 Sum_probs=52.5
Q ss_pred HHhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHc----c-------------CCCCCc-chHH
Q 007808 442 LARAGRLAEAVDFVKRMPIEADAVIWANLLGSCRVYKNVELAELALERLTE----L-------------EPKNPA-NFVM 503 (589)
Q Consensus 442 ~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~-------------~p~~~~-~~~~ 503 (589)
+.-.|.+.+++-++.... .....-|.. -+|.+.+++..|+..++.+++ . +|.|.+ .+..
T Consensus 43 LyyngEY~R~Lf~L~~lN-T~Ts~YYk~--LCy~klKdYkkA~~~le~il~~kvd~d~~~d~~~~~ffvd~~DkEfFy~l 119 (242)
T 3kae_A 43 LYLNGEYTRALFHLHKLN-TCTSKYYES--LCYKKKKDYKKAIKSLESILEGKVERDPDVDARIQEMFVDPGDEEFFESL 119 (242)
T ss_dssp HHHTTCHHHHHHHHHTCC-BHHHHHHHH--HHHHHTTCHHHHHHHHHHHHTTCSBCCCCCCHHHHTTSCCTTCHHHHHHH
T ss_pred hhhcchHhHHHHHHHhcc-hHHHHHHHH--HHHHHHHHHHHHHHHHHHHHhcccccCcccccccceeeeccchHHHHHHH
Confidence 445777777777777653 112222222 345677788888888888773 1 233333 5667
Q ss_pred HHHHHhhcCChHHHHHHHHHh
Q 007808 504 LSNIYGDLGRWKDVARIKVAM 524 (589)
Q Consensus 504 l~~~~~~~g~~~~A~~~~~~~ 524 (589)
++.++...|+-++|+..+..-
T Consensus 120 ~a~lltq~g~r~EaI~y~~~S 140 (242)
T 3kae_A 120 LGDLCTLSGYREEGIGHYVRS 140 (242)
T ss_dssp HHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHhcCHHHhhhHhhhh
Confidence 788899999999999988765
No 291
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=44.64 E-value=51 Score=26.16 Aligned_cols=64 Identities=16% Similarity=0.251 Sum_probs=40.5
Q ss_pred HHHHHHHHHhcCChHHHHHHHhhCCCCCc---chHHHHHHHHHhCCC--hHHHHHHHHHHHHCCCCCCH
Q 007808 333 GNALIDMYAKCGIIENAVDVFNSMDTKDL---ITWNTIISGLAMHGR--GAGALSLFHEMKNAGEMPDG 396 (589)
Q Consensus 333 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~l~~~~~~~~~--~~~A~~~~~~m~~~~~~p~~ 396 (589)
...++.-|...|+.++|...++++..|.. .+...+..++-+.++ .+.+..++..+...|+-+..
T Consensus 12 i~~lL~EY~~~~D~~EA~~cl~EL~~p~f~~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~is~~ 80 (152)
T 2ion_A 12 IDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITID 80 (152)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCHH
Confidence 45577778888888888888888876522 233444444544322 34577777777776654433
No 292
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=44.36 E-value=93 Score=33.64 Aligned_cols=85 Identities=6% Similarity=-0.155 Sum_probs=47.0
Q ss_pred HHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHhhCC--CCC-----------------
Q 007808 402 ILCACTHMGLVEEGLSYFQSMAMDYSIVPQIEHYGCMVDLLARAGRLAEAVDFVKRMP--IEA----------------- 462 (589)
Q Consensus 402 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p----------------- 462 (589)
++..|...|.++-+.++..-+ +.++..--.++.+|...|++++|.+.|+++. +.+
T Consensus 816 l~~~L~~~~~~~~a~eL~~~~------~~t~~~~yv~gr~~L~~ge~~~A~~~F~kAA~gl~~~~~~~~~~~~~~~ll~~ 889 (950)
T 4gq2_M 816 LVEKLFLFKQYNACMQLIGWL------NSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEK 889 (950)
T ss_dssp HHHHHHHTTCHHHHHHHGGGC------CSSHHHHHHHHHHHHHTTCHHHHHHHHHTCCCTTCSSCCSCGGGHHHHHHHHH
T ss_pred HHHHHHHhcHHHHHHHHHhhc------CCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcccCcccccchhhhhhccCc
Confidence 455556666666555433222 2232222235566777777777777777662 110
Q ss_pred ------CHHHHHHHHHHHhcCCCHHHHHHHHHHHHc
Q 007808 463 ------DAVIWANLLGSCRVYKNVELAELALERLTE 492 (589)
Q Consensus 463 ------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 492 (589)
...-|..++..+.+.+-++-+.++.+.+++
T Consensus 890 ~e~~~~~~~YY~hV~~LFE~~~a~~~vi~fA~lAI~ 925 (950)
T 4gq2_M 890 YHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADA 925 (950)
T ss_dssp TTTCSHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ccccchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Confidence 112445555666667777777777777765
No 293
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=44.06 E-value=74 Score=27.45 Aligned_cols=87 Identities=9% Similarity=-0.059 Sum_probs=46.8
Q ss_pred HHHHHHHcCCChhHHHHHHHHhhhC--CCCC----CcccHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchHHHhHHHH
Q 007808 70 AMFNGYAQNEFHRTVVVLFTQMKKL--DAMP----NCFTFPIVLKSCVKINALREGEELHCLVLKNGFRANIFVGTALIE 143 (589)
Q Consensus 70 ~ll~~~~~~~~~~~a~~~~~~m~~~--~~~p----~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 143 (589)
--++.+....++++|.+++++..+. +.++ ........+..-.....-.-+..+.+.+ .. .++.......+.
T Consensus 23 deLDv~IA~r~feeAv~lle~~~~~l~~~~~~~~~~~~~~~~~l~~ki~eR~~~L~~~L~~~l-~~--~~~~~~~r~~v~ 99 (235)
T 2d2s_A 23 EEIDIELARLRFESAVETLLDIESQLEDLSERISDEELMLLNLISLKIEQRREAISSKLSQSI-LS--SNEIVHLKSGTE 99 (235)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTC-------CHHHHHHHHHHHHHHHHHHHHHHHHH-HT--CSSHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHhCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHH-Hh--cCCHHHHHHHHH
Confidence 3467888888999998888876542 2222 1122222233322222333344444444 22 344555555667
Q ss_pred HHHcCCChHHHHHHHc
Q 007808 144 LYSTGKAIEAAYKVFG 159 (589)
Q Consensus 144 ~~~~~g~~~~A~~~~~ 159 (589)
.+.+.|+-++|.++|-
T Consensus 100 ~L~rLg~~~~A~~lfL 115 (235)
T 2d2s_A 100 NMIKLGLPEQALDLFL 115 (235)
T ss_dssp HHHHTTCHHHHHHHHH
T ss_pred HHHHCCChhHHHHHHH
Confidence 7777777777777763
No 294
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=43.99 E-value=94 Score=24.97 Aligned_cols=56 Identities=2% Similarity=-0.053 Sum_probs=41.2
Q ss_pred hHHHHHHHHhhhCCCCCCcc-cHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchHH
Q 007808 82 RTVVVLFTQMKKLDAMPNCF-TFPIVLKSCVKINALREGEELHCLVLKNGFRANIFV 137 (589)
Q Consensus 82 ~~a~~~~~~m~~~~~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 137 (589)
+.+.++|..|...|+--... .|..-...+...|++.+|.++|+.-++.+-.|-...
T Consensus 77 ~~p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P~~~L 133 (164)
T 2wvi_A 77 NEPLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAEPLERL 133 (164)
T ss_dssp SCHHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHHHH
T ss_pred CCHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHH
Confidence 44777888888887654443 455666667778899999999999888887775443
No 295
>2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein structure initia YORK SGX research center for structural genomics, nysgxrc; 2.09A {Enterococcus faecium} SCOP: a.80.1.2 PDB: 2qw6_A
Probab=43.97 E-value=1.4e+02 Score=24.83 Aligned_cols=47 Identities=19% Similarity=0.193 Sum_probs=33.6
Q ss_pred HHHHHHHHH---hCCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCc
Q 007808 364 WNTIISGLA---MHGRGAGALSLFHEMKNAGEMPDGITFIGILCACTHMGL 411 (589)
Q Consensus 364 ~~~l~~~~~---~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~ 411 (589)
..-+|+++. +..+++.|+-++-+|++.| .|....-..++.+....|.
T Consensus 14 HYd~iSAf~KSiRGSDpDAAly~LaRml~~G-Dp~~IaRRLvi~AsEDIGl 63 (204)
T 2r9g_A 14 HYDVISAFQKSIRGSDVDAALHYLARLVEAG-DLASICRRLMVIGYEDIGL 63 (204)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHTTGG
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhhccC
Confidence 334555554 4689999999999999999 7776666666666655553
No 296
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=43.04 E-value=1.5e+02 Score=24.93 Aligned_cols=41 Identities=10% Similarity=0.101 Sum_probs=23.0
Q ss_pred HHHHHHHhCCCCCccch--HHHHHHHHccCChhHHHHHhhcCC
Q 007808 21 IQTQVVTSGLEKSDYIT--PRIITACAQLKQMTYARKMFDKIT 61 (589)
Q Consensus 21 ~~~~~~~~g~~~~~~~~--~~l~~~~~~~~~~~~A~~~~~~~~ 61 (589)
+...+.+.|..++.... ...+...++.|+.+-+..+++...
T Consensus 26 ~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~ 68 (237)
T 3b7b_A 26 ICHMLVQAGANIDTCSEDQRTPLMEAAENNHLEAVKYLIKAGA 68 (237)
T ss_dssp HHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTC
T ss_pred HHHHHHHcCCCcCccCCCCCCHHHHHHHhCCHHHHHHHHhCCC
Confidence 45556666665554221 234555556677777777666543
No 297
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=42.89 E-value=1.5e+02 Score=24.86 Aligned_cols=41 Identities=10% Similarity=0.072 Sum_probs=19.2
Q ss_pred HHHHHHHhCCCCCccc--hHHHHHHHHccCChhHHHHHhhcCC
Q 007808 21 IQTQVVTSGLEKSDYI--TPRIITACAQLKQMTYARKMFDKIT 61 (589)
Q Consensus 21 ~~~~~~~~g~~~~~~~--~~~l~~~~~~~~~~~~A~~~~~~~~ 61 (589)
+...+.+.|..++... -...+...++.|+++-+..+++...
T Consensus 24 ~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~ 66 (240)
T 3eu9_A 24 RCRELVEAGYDVRQPDKENVTLLHWAAINNRIDLVKYYISKGA 66 (240)
T ss_dssp HHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTC
T ss_pred HHHHHHHcCCCcCCCCCCCCCHHHHHHHhCCHHHHHHHHHcCC
Confidence 3344445554443321 1134444555556665555555443
No 298
>3mv2_A Coatomer subunit alpha; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_A
Probab=41.98 E-value=1.9e+02 Score=26.25 Aligned_cols=58 Identities=10% Similarity=0.011 Sum_probs=41.1
Q ss_pred HhhCCCCCC--HHHHHHHHHHHhcCCCHHHHHHHHHHHHccCCCCCcchHHHHHHHhhcCChHHHHHHHHHhhh
Q 007808 455 VKRMPIEAD--AVIWANLLGSCRVYKNVELAELALERLTELEPKNPANFVMLSNIYGDLGRWKDVARIKVAMRD 526 (589)
Q Consensus 455 ~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 526 (589)
|-...+.|. ..++..-+....+.+++..|..+.++++++.|. +. ..++|.+++..-.+
T Consensus 196 FT~c~LQp~H~~LaLr~AM~~a~K~KNy~tAa~fArrLLel~p~-~~-------------~a~qArkil~~ce~ 255 (325)
T 3mv2_A 196 FTKAKLSPIHRTNALQVAMSQHFKHKNFLQASYFAGEFLKIISS-GP-------------RAEQARKIKNKADS 255 (325)
T ss_dssp GGGSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCS-SH-------------HHHHHHHHHHHHHT
T ss_pred hccCCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCC-HH-------------HHHHHHHHHHHHhc
Confidence 444455664 345566677788999999999999999999995 21 44557777666543
No 299
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=41.06 E-value=52 Score=27.98 Aligned_cols=43 Identities=7% Similarity=0.121 Sum_probs=19.2
Q ss_pred HHHHHHHHHc--cCCCCCcchHHHHHHHhhcCChHHHHHHHHHhh
Q 007808 483 AELALERLTE--LEPKNPANFVMLSNIYGDLGRWKDVARIKVAMR 525 (589)
Q Consensus 483 A~~~~~~~~~--~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 525 (589)
+.++|..+.. +.-.....|...+..+...|++.+|.++|+.-.
T Consensus 133 p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi 177 (223)
T 4aez_C 133 PVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGK 177 (223)
T ss_dssp HHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3344444443 223333444444444555555555555544443
No 300
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=40.46 E-value=1.2e+02 Score=23.10 Aligned_cols=62 Identities=18% Similarity=0.367 Sum_probs=37.9
Q ss_pred HHHHHHHHhcCCHHHHHHHHhhCCCCCc---hhHHHHHHHHHhCCC--hHHHHHHHHHHHHcCCCCCc
Q 007808 232 NTMLSGYANNGDVEECKRLFEEMPERNV---FSWNGLIGGYANNGL--FFEVLDAFKRMLTEGRVFPN 294 (589)
Q Consensus 232 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~---~~~~~l~~~~~~~g~--~~~A~~~~~~~~~~~~~~p~ 294 (589)
..++.-|...|+.++|.+.++++..|.. .....+..++-+.++ .+.+..++..+...| +-+.
T Consensus 11 ~~ll~EY~~~~D~~Ea~~cl~eL~~p~f~~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~-~is~ 77 (129)
T 2nsz_A 11 DMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSS-TITI 77 (129)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTT-CSCH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHhCCCccHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCC-CcCH
Confidence 4567777778888888888888765522 223334444444432 355677777777776 4333
No 301
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=40.06 E-value=1.6e+02 Score=24.56 Aligned_cols=111 Identities=14% Similarity=0.076 Sum_probs=53.5
Q ss_pred HHHHHccCChhHHHHHhhcCCCCCc---ccHHHHHHHHHcCCChhHHHHHHHHhhhCCCCCCccc---HHHHHHHHhccC
Q 007808 41 ITACAQLKQMTYARKMFDKITDQNV---VSWNAMFNGYAQNEFHRTVVVLFTQMKKLDAMPNCFT---FPIVLKSCVKIN 114 (589)
Q Consensus 41 ~~~~~~~~~~~~A~~~~~~~~~~~~---~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~---~~~ll~~~~~~~ 114 (589)
+...++.|+++....+++....++. ... ..+...+..|+.+-+ +.+.+.|..++... -...+...+..|
T Consensus 13 l~~A~~~g~~~~~~~Ll~~g~~~~~~~~~g~-t~L~~A~~~~~~~~v----~~Ll~~~~~~~~~~~~~~~t~L~~A~~~~ 87 (240)
T 3eu9_A 13 IVKATQYGIYERCRELVEAGYDVRQPDKENV-TLLHWAAINNRIDLV----KYYISKGAIVDQLGGDLNSTPLHWATRQG 87 (240)
T ss_dssp HHHHHHTTCHHHHHHHHHTTCCTTCCCTTSC-CHHHHHHHTTCHHHH----HHHHHTTCCTTCCBTTTTBCHHHHHHHHT
T ss_pred HHHHHHcCChHHHHHHHHcCCCcCCCCCCCC-CHHHHHHHhCCHHHH----HHHHHcCCcchhhcCCcCCChhHHHHHcC
Confidence 3445567888888888876544322 222 344455566666444 33444443333221 112333344455
Q ss_pred ChHHHHHHHHHHHHhCCCCchH--HHhHHHHHHHcCCChHHHHHHHcc
Q 007808 115 ALREGEELHCLVLKNGFRANIF--VGTALIELYSTGKAIEAAYKVFGE 160 (589)
Q Consensus 115 ~~~~a~~~~~~~~~~~~~~~~~--~~~~li~~~~~~g~~~~A~~~~~~ 160 (589)
+.+ +++.+++.|..++.. .....+...+..|+.+-+..+++.
T Consensus 88 ~~~----~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~ 131 (240)
T 3eu9_A 88 HLS----MVVQLMKYGADPSLIDGEGCSCIHLAAQFGHTSIVAYLIAK 131 (240)
T ss_dssp CHH----HHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHT
T ss_pred CHH----HHHHHHHcCCCCcccCCCCCCHHHHHHHcCHHHHHHHHHhc
Confidence 543 445555666554422 111233344455666555555543
No 302
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=40.06 E-value=1.1e+02 Score=24.30 Aligned_cols=58 Identities=19% Similarity=0.402 Sum_probs=34.7
Q ss_pred HHHHHHHHhcCCHHHHHHHHhhCCCCCc---hhHHHHHHHHHhCCC--hHHHHHHHHHHHHcC
Q 007808 232 NTMLSGYANNGDVEECKRLFEEMPERNV---FSWNGLIGGYANNGL--FFEVLDAFKRMLTEG 289 (589)
Q Consensus 232 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~---~~~~~l~~~~~~~g~--~~~A~~~~~~~~~~~ 289 (589)
..++.-|...|+.++|.+.++++..|.. .....+..++-+.++ .+.+..++..+...+
T Consensus 13 ~~lL~EY~~~~D~~EA~~cl~EL~~p~f~~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~ 75 (152)
T 2ion_A 13 DMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSS 75 (152)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhCCCHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCC
Confidence 4566777777778888777777765521 223334444444322 345667777777666
No 303
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=39.91 E-value=1.8e+02 Score=25.08 Aligned_cols=22 Identities=5% Similarity=0.217 Sum_probs=11.3
Q ss_pred HHHHHHccCChhHHHHHhhcCC
Q 007808 40 IITACAQLKQMTYARKMFDKIT 61 (589)
Q Consensus 40 l~~~~~~~~~~~~A~~~~~~~~ 61 (589)
.+...++.|+++....+++...
T Consensus 8 ~L~~A~~~g~~~~v~~Ll~~g~ 29 (285)
T 1wdy_A 8 LLIKAVQNEDVDLVQQLLEGGA 29 (285)
T ss_dssp HHHHHHHTTCHHHHHHHHHTTC
T ss_pred HHHHHHHcCCHHHHHHHHHcCC
Confidence 3444445555555555555443
No 304
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=39.28 E-value=1.2e+02 Score=26.90 Aligned_cols=131 Identities=9% Similarity=0.045 Sum_probs=74.7
Q ss_pred HHHHHHHHhCCCCCccchHHHHHHHHccCChhHHHHHhhcCCCCC---cccHHHHHHHHHcCCChhHHHHHHHHhhhCCC
Q 007808 20 QIQTQVVTSGLEKSDYITPRIITACAQLKQMTYARKMFDKITDQN---VVSWNAMFNGYAQNEFHRTVVVLFTQMKKLDA 96 (589)
Q Consensus 20 ~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~ 96 (589)
.+...+.+.|..++..--.+.+...++.|+.+-+..+++....++ ..-++.+ ...+..|+.+-+.-+++. |.
T Consensus 45 ~~v~~Ll~~g~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~t~L-~~A~~~g~~~~v~~Ll~~----ga 119 (285)
T 3kea_A 45 RLVCTLLNAGALKNLLENEFPLHQAATLEDTKIVKILLFSGLDDSQFDDKGNTAL-YYAVDSGNMQTVKLFVKK----NW 119 (285)
T ss_dssp HHHHHHHHTTGGGSCCTTCCHHHHHTTSSSCHHHHHHHHTTCCTTCCCTTSCCHH-HHHHHTTCHHHHHHHHHH----CG
T ss_pred HHHHHHHhCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCcHH-HHHHHcCCHHHHHHHHhc----CC
Confidence 456677778877776655567777888999999999988765533 3333344 334456666555444443 43
Q ss_pred CCCcc---cHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchH-HHhHHHHHHHcCCChHHHHHHHc
Q 007808 97 MPNCF---TFPIVLKSCVKINALREGEELHCLVLKNGFRANIF-VGTALIELYSTGKAIEAAYKVFG 159 (589)
Q Consensus 97 ~p~~~---~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~li~~~~~~g~~~~A~~~~~ 159 (589)
.++.. -+.+.+...+..|+.+ +.+.+++.|..+... .-.+.+...+..|+.+-+.-+++
T Consensus 120 ~~~~~~~~g~~t~L~~A~~~~~~~----~v~~Ll~~g~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~ 182 (285)
T 3kea_A 120 RLMFYGKTGWKTSFYHAVMLNDVS----IVSYFLSEIPSTFDLAILLSCIHITIKNGHVDMMILLLD 182 (285)
T ss_dssp GGGGCSSSGGGSHHHHHHHTTCHH----HHHHHHTTSCTTCCCSTHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CCCccCCCCCCCHHHHHHHcCCHH----HHHHHHhCCCccccccCCccHHHHHHHcChHHHHHHHHH
Confidence 33322 2234455555666654 455556666443221 22333444556677666655554
No 305
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=38.07 E-value=76 Score=21.59 Aligned_cols=61 Identities=11% Similarity=0.053 Sum_probs=39.5
Q ss_pred HHhhhCCCCCCcccHHHHHHHHhccC-ChHHHHHHHHHHHHhCCCCchHHHhHHHHHHHcCCC
Q 007808 89 TQMKKLDAMPNCFTFPIVLKSCVKIN-ALREGEELHCLVLKNGFRANIFVGTALIELYSTGKA 150 (589)
Q Consensus 89 ~~m~~~~~~p~~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 150 (589)
+.+.+.|+..+..- ..++..+...+ ..-.+.++++.+.+.++..+..|-...++.+...|-
T Consensus 6 ~~l~~~g~~~t~~r-~~IL~~l~~~~~~~~s~~el~~~l~~~~~~is~~TVyR~L~~L~~~Gl 67 (83)
T 2fu4_A 6 TALKKAGLKVTLPR-LKILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGI 67 (83)
T ss_dssp HHHHHTTCCCCHHH-HHHHHHHTSGGGSSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTS
T ss_pred HHHHHcCCCcCHHH-HHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCC
Confidence 34566777766554 34556665554 566788888888887766666666666666666554
No 306
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=37.49 E-value=1.4e+02 Score=25.35 Aligned_cols=53 Identities=8% Similarity=-0.041 Sum_probs=35.7
Q ss_pred hHHHHHHHHhhhCCCCCCcc-cHHHHHHHHhccCChHHHHHHHHHHHHhCCCCc
Q 007808 82 RTVVVLFTQMKKLDAMPNCF-TFPIVLKSCVKINALREGEELHCLVLKNGFRAN 134 (589)
Q Consensus 82 ~~a~~~~~~m~~~~~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~ 134 (589)
+.+.++|..|...|+--... .|..-...+...|++.+|.++|+.-++.+-.|-
T Consensus 131 ~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P~ 184 (223)
T 4aez_C 131 DEPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMKAKPF 184 (223)
T ss_dssp SCHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCBSH
T ss_pred CCHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccH
Confidence 56667777777776544433 455556666677788888888887777776663
No 307
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=37.02 E-value=3.6e+02 Score=27.55 Aligned_cols=89 Identities=8% Similarity=-0.026 Sum_probs=47.2
Q ss_pred HHHHhcCCHHHHHHHHhhCCCCCc--hhHHHHHH-HHHhCC--------------Ch-HHHHHHHHHHHHc-----CCCC
Q 007808 236 SGYANNGDVEECKRLFEEMPERNV--FSWNGLIG-GYANNG--------------LF-FEVLDAFKRMLTE-----GRVF 292 (589)
Q Consensus 236 ~~~~~~~~~~~A~~~~~~~~~~~~--~~~~~l~~-~~~~~g--------------~~-~~A~~~~~~~~~~-----~~~~ 292 (589)
.-+...|++++|..+|.-..+.|. ...|.++. +..... ++ ..|.++.+..... . +.
T Consensus 451 ~~ae~~G~~~dAi~LY~La~~~d~vl~lln~~Ls~~l~~~~~~~~~~~~~~~~~~~l~~la~~i~~~y~~~~~~~~~-~~ 529 (661)
T 2qx5_A 451 RRADEDGRIYDSILLYQLAEEYDIVITLVNSLLSDTLSASDLDQPLVGPDDNSETNPVLLARRMASIYFDNAGISRQ-IH 529 (661)
T ss_dssp HHHHHTTCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTSCSSCSSCCTTTCHHHHHHHHHHHHTTCHHHHTT-SC
T ss_pred HHHHHCCCHHHHHHHHHHhcCHHHHHHHHHHHHHHHhcccccccccccccccccccHHHHHHHHHHHHhcCchhhhh-cc
Confidence 355567888888888887776443 23343333 222211 12 2333333332221 1 22
Q ss_pred C-cHHHHHHHHHH-----HHhcCChhHHHHHHHHHHHcCCCC
Q 007808 293 P-NDATIVTVLSA-----CARLGALDFSKWVHVYAEYNGYQG 328 (589)
Q Consensus 293 p-~~~~~~~l~~~-----~~~~~~~~~a~~~~~~~~~~~~~~ 328 (589)
+ +..|+..|+.. +...|+++.|.+.++.+ ++-|
T Consensus 530 ~~~~~t~~lLl~l~~f~~~~~~g~~~~AL~~i~~L---~llP 568 (661)
T 2qx5_A 530 VKNKEICMLLLNISSIRELYFNKQWQETLSQMELL---DLLP 568 (661)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHT---SCSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhC---CCCC
Confidence 2 44566665543 36789999998777664 4555
No 308
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=36.87 E-value=1.7e+02 Score=24.35 Aligned_cols=111 Identities=11% Similarity=0.030 Sum_probs=50.0
Q ss_pred HHHHHHccCChhHHHHHhhcCCC----CCcccHHHHHHHHHcCCChhHHHHHHHHhhhCCCCCCcc---cHHHHHHHHhc
Q 007808 40 IITACAQLKQMTYARKMFDKITD----QNVVSWNAMFNGYAQNEFHRTVVVLFTQMKKLDAMPNCF---TFPIVLKSCVK 112 (589)
Q Consensus 40 l~~~~~~~~~~~~A~~~~~~~~~----~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~---~~~~ll~~~~~ 112 (589)
.+...++.|+++....+++.-.. ++...++.+. ..+..|+.+ +++.+.+.|..++.. -.+.+ ...+.
T Consensus 9 ~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~-~A~~~g~~~----~v~~Ll~~g~~~~~~~~~g~t~L-~~A~~ 82 (231)
T 3aji_A 9 MICNLAYSGKLDELKERILADKSLATRTDQDSRTALH-WACSAGHTE----IVEFLLQLGVPVNDKDDAGWSPL-HIAAS 82 (231)
T ss_dssp HHHHHHHHTCHHHHHHHHHHCGGGGGCCCTTSCCHHH-HHHHHTCHH----HHHHHHHTTCCSCCCCTTSCCHH-HHHHH
T ss_pred hHHHHHHhCCHHHHHHHHHhchhhhhcCCCCCCCHHH-HHHHcCcHH----HHHHHHHhCCCCCCcCCCCCCHH-HHHHH
Confidence 35556667778777777765432 2333333333 333445543 333344444443322 22223 33334
Q ss_pred cCChHHHHHHHHHHHHhCCCCchHH--HhHHHHHHHcCCChHHHHHHHcc
Q 007808 113 INALREGEELHCLVLKNGFRANIFV--GTALIELYSTGKAIEAAYKVFGE 160 (589)
Q Consensus 113 ~~~~~~a~~~~~~~~~~~~~~~~~~--~~~li~~~~~~g~~~~A~~~~~~ 160 (589)
.|+.+ +++.+++.|..++... ....+...+..|+.+-+..+++.
T Consensus 83 ~~~~~----~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~ 128 (231)
T 3aji_A 83 AGXDE----IVKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEG 128 (231)
T ss_dssp HTCHH----HHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHT
T ss_pred cCHHH----HHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHc
Confidence 45543 4445555555443211 11223333445555555555443
No 309
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=36.46 E-value=45 Score=25.30 Aligned_cols=50 Identities=6% Similarity=-0.021 Sum_probs=20.8
Q ss_pred CCChhHHHHHHHHHhcCCChHHHHHHhcccCCCChhhHHHHHHHHHhcCC
Q 007808 194 ERDVILWNTIVSGYIDVRNMIEARKLFDQMPKKDVISWNTMLSGYANNGD 243 (589)
Q Consensus 194 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~ 243 (589)
++|...-...+.++.+.|+.+....+.+.+..++..+....+.++.+.|+
T Consensus 53 d~~~~vR~~A~~aL~~~~~~~a~~~L~~~L~d~~~~VR~~A~~aL~~~~~ 102 (131)
T 1te4_A 53 NEDWRIRGAAAWIIGNFQDERAVEPLIKLLEDDSGFVRSGAARSLEQIGG 102 (131)
T ss_dssp CSCHHHHHHHHHHHGGGCSHHHHHHHHHHHHHCCTHHHHHHHHHHHHHCS
T ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc
Confidence 33444444444445554443322222222223444444444444444444
No 310
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=36.22 E-value=57 Score=31.98 Aligned_cols=61 Identities=18% Similarity=0.144 Sum_probs=49.7
Q ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHccCCCC-------CcchHHHHHHHhhcCChHHHHHHHHHhhh
Q 007808 464 AVIWANLLGSCRVYKNVELAELALERLTELEPKN-------PANFVMLSNIYGDLGRWKDVARIKVAMRD 526 (589)
Q Consensus 464 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~-------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 526 (589)
...++.++..|...+.++.|..+..+.. .|.+ ...++.+|.++.-.++|.+|.+.+....+
T Consensus 231 a~l~nllLRnYL~~~~y~qA~~lvsk~~--fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~r 298 (523)
T 4b4t_S 231 AMLINLILRDFLNNGEVDSASDFISKLE--YPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIR 298 (523)
T ss_dssp HHHHHHHHHHHHHSSCSTTHHHHHHHHC--SCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHccCcHHHHHHHHhcCc--CCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 4668888899999999999999999986 3432 23456679999999999999999888743
No 311
>3ctd_A Putative ATPase, AAA family; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Prochlorococcus marinus subsp} SCOP: a.80.1.2
Probab=35.71 E-value=2e+02 Score=24.17 Aligned_cols=48 Identities=25% Similarity=0.319 Sum_probs=35.2
Q ss_pred hHHHHHHHHH---hCCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccC
Q 007808 363 TWNTIISGLA---MHGRGAGALSLFHEMKNAGEMPDGITFIGILCACTHMG 410 (589)
Q Consensus 363 ~~~~l~~~~~---~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g 410 (589)
...-+|+++. +..+++.|+-++-+|++.|-.|....-..++.+....|
T Consensus 34 ~HYd~ISAf~KSiRGSDpDAALywLaRMl~~GEDp~~IaRRLvi~AsEDIG 84 (213)
T 3ctd_A 34 NHFDVISAFIKSIRGSDPDATLYWLANMVEAGEDPNFIFRRLLISACEDIG 84 (213)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTG
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhcc
Confidence 3444566664 46899999999999999998887766666666655544
No 312
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=33.88 E-value=2.3e+02 Score=25.91 Aligned_cols=206 Identities=10% Similarity=-0.085 Sum_probs=93.7
Q ss_pred HHHHHHHccCChhHHHHHhhcCCCCC---cccHHHHHHHHHcCCChhHHHHHHHHhhhCCCCCCcccHHHHHHHHhccCC
Q 007808 39 RIITACAQLKQMTYARKMFDKITDQN---VVSWNAMFNGYAQNEFHRTVVVLFTQMKKLDAMPNCFTFPIVLKSCVKINA 115 (589)
Q Consensus 39 ~l~~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~ 115 (589)
+.+...++.|+.+.+..+++....++ ..-++.| ...+..|+.+-+.-+ .+.|..++...-...+...+..|+
T Consensus 22 t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~g~t~L-~~A~~~g~~~~v~~L----l~~g~~~~~~~g~t~L~~A~~~g~ 96 (364)
T 3ljn_A 22 EKIHVAARKGQTDEVRRLIETGVSPTIQNRFGCTAL-HLACKFGCVDTAKYL----ASVGEVHSLWHGQKPIHLAVMANK 96 (364)
T ss_dssp HHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHH-HHHHHHCCHHHHHHH----HHHCCCCCCBTTBCHHHHHHHTTC
T ss_pred CHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCcHH-HHHHHcCCHHHHHHH----HHCCCCccccCCCCHHHHHHHcCC
Confidence 34445555667776666666543322 2222233 333344554333322 333333333222223333445566
Q ss_pred hHHHHHHHHHHHHhCCCCch--------------------HHHhHHHHHHHcCC--ChHHHHHHHccCCCCC---eehHH
Q 007808 116 LREGEELHCLVLKNGFRANI--------------------FVGTALIELYSTGK--AIEAAYKVFGEMDERN---VVVWT 170 (589)
Q Consensus 116 ~~~a~~~~~~~~~~~~~~~~--------------------~~~~~li~~~~~~g--~~~~A~~~~~~~~~~~---~~~~~ 170 (589)
.+-+..+++.....|..++. ...+ .+...+..| +.+-+..+++.-..++ ..-+
T Consensus 97 ~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t-~L~~A~~~g~~~~~~v~~Ll~~ga~~~~~d~~g~- 174 (364)
T 3ljn_A 97 TDLVVALVEGAKERGQMPESLLNECDEREVNEIGSHVKHCKGQT-ALHWCVGLGPEYLEMIKILVQLGASPTAKDKADE- 174 (364)
T ss_dssp HHHHHHHHHHHHHHTCCHHHHHTCCCCCCEEEETTEEEEESCCC-HHHHHHHSCGGGHHHHHHHHHHTCCTTCCCTTSC-
T ss_pred HHHHHHHHHhccccCCCHHHHHhhcchHhhhhhccccCCCCCCC-HHHHHHHcCCchHHHHHHHHHcCCCCcccCCCCC-
Confidence 66555555554444443332 1122 233344455 5555555554432221 1111
Q ss_pred HHHHHHHhCCCHHHHHHHHHhCCC-----C---ChhHHHHHHHHHhcCCChHHHHHHhcccCCC---ChhhHHHHHHHHH
Q 007808 171 SMINGYISCGDIVSARCLFELAPE-----R---DVILWNTIVSGYIDVRNMIEARKLFDQMPKK---DVISWNTMLSGYA 239 (589)
Q Consensus 171 ~l~~~~~~~g~~~~a~~~~~~~~~-----~---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~l~~~~~ 239 (589)
+.+...+..|+.+-+..+++.... . |..-.+ .+...+..|+.+-+.-+++.-..+ |..-.+ -+...+
T Consensus 175 t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~g~t-~L~~A~~~g~~~~v~~Ll~~gad~~~~d~~g~t-pL~~A~ 252 (364)
T 3ljn_A 175 TPLMRAMEFRNREALDLMMDTVPSKSSLRLDYANKQGNS-HLHWAILINWEDVAMRFVEMGIDVNMEDNEHTV-PLYLSV 252 (364)
T ss_dssp CHHHHHHHTTCHHHHHHHHHHCSCSSSCCTTCCCTTCCC-TTHHHHTTTCHHHHHHHHTTTCCTTCCCTTSCC-HHHHHH
T ss_pred CHHHHHHHcCCHHHHHHHHhcccccccccccccCCCCCc-HHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCC-HHHHHH
Confidence 223344466676666666655332 1 211111 223345667777777776654332 222222 234445
Q ss_pred hcCCHHHHHHHHhh
Q 007808 240 NNGDVEECKRLFEE 253 (589)
Q Consensus 240 ~~~~~~~A~~~~~~ 253 (589)
..|+.+-+.-+++.
T Consensus 253 ~~g~~~~v~~Ll~~ 266 (364)
T 3ljn_A 253 RAAMVLLTKELLQK 266 (364)
T ss_dssp HTCCHHHHHHHHHH
T ss_pred HhChHHHHHHHHHc
Confidence 66777777777765
No 313
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=33.77 E-value=1.9e+02 Score=23.41 Aligned_cols=51 Identities=10% Similarity=0.117 Sum_probs=29.5
Q ss_pred HHHHHHHccCChhHHHHHhhcCCCCCc---ccHHHHHHHHHcCCChhHHHHHHHH
Q 007808 39 RIITACAQLKQMTYARKMFDKITDQNV---VSWNAMFNGYAQNEFHRTVVVLFTQ 90 (589)
Q Consensus 39 ~l~~~~~~~~~~~~A~~~~~~~~~~~~---~~~~~ll~~~~~~~~~~~a~~~~~~ 90 (589)
+.+...++.|+.+-+..+++....++. ..++.+ ...+..|+.+-+..+++.
T Consensus 41 t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l-~~A~~~~~~~~~~~Ll~~ 94 (201)
T 3hra_A 41 TPLNIAVHNNDIEIAKALIDRGADINLQNSISDSPY-LYAGAQGRTEILAYMLKH 94 (201)
T ss_dssp CHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHH-HHHHHTTCHHHHHHHHHH
T ss_pred CHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHH-HHHHHcCCHHHHHHHHhc
Confidence 455666677888888888887554332 223333 334456666555555533
No 314
>3bge_A Predicted ATPase; structural genomics, predicted AAA+ATPase C-terminal fragmen protein structure initiative; 1.85A {Haemophilus influenzae} SCOP: a.80.1.2
Probab=33.33 E-value=1.7e+02 Score=24.23 Aligned_cols=90 Identities=14% Similarity=0.100 Sum_probs=0.0
Q ss_pred HHHHHHhC---CChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCc-----HHHHHHHHHHhHHhcCCCCChHHHHHH
Q 007808 367 IISGLAMH---GRGAGALSLFHEMKNAGEMPDGITFIGILCACTHMGL-----VEEGLSYFQSMAMDYSIVPQIEHYGCM 438 (589)
Q Consensus 367 l~~~~~~~---~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~-----~~~A~~~~~~~~~~~~~~~~~~~~~~l 438 (589)
+|+++.+. .+++.|+-++-+|++.|-.|....-..++.+....|. ...|...++.. +..|.+--.......
T Consensus 10 ~ISAf~KSiRGSDpDAAly~LaRMl~~GEDp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~-~~iG~PE~~i~Laqa 88 (201)
T 3bge_A 10 LISALHKSVRGSAPDAALYWYARILTAGGDPLYVARRLLAIASEDVGNADPRAMQVALAAWDCF-TRVGAYEGERAIAQA 88 (201)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTGGGCTTHHHHHHHHHHHH-HHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHH-HHHCCcHHHHHHHHH
Q ss_pred HHHHHhcCCHHHHHHHHhh
Q 007808 439 VDLLARAGRLAEAVDFVKR 457 (589)
Q Consensus 439 ~~~~~~~g~~~~A~~~~~~ 457 (589)
+--++.+-+...+...++.
T Consensus 89 viyLA~aPKSNs~y~A~~~ 107 (201)
T 3bge_A 89 IIYLSVAPKSNAVYTAFNT 107 (201)
T ss_dssp HHHHHHSCCCCHHHHHHHH
T ss_pred HHHHHcCCccHHHHHHHHH
No 315
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=33.32 E-value=2.7e+02 Score=25.38 Aligned_cols=178 Identities=12% Similarity=0.051 Sum_probs=85.9
Q ss_pred CcccHHHHHHHHHcCCChhHHHHHHHHhhhCCCCCCcc---cHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchHHHhH
Q 007808 64 NVVSWNAMFNGYAQNEFHRTVVVLFTQMKKLDAMPNCF---TFPIVLKSCVKINALREGEELHCLVLKNGFRANIFVGTA 140 (589)
Q Consensus 64 ~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~---~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 140 (589)
|..-++.|. ..+..|+.+.+..++ +.|..++.. -.+ .+...+..|+.+ +.+.+++.|..++......
T Consensus 17 d~~g~t~L~-~Aa~~g~~~~v~~Ll----~~g~~~~~~d~~g~t-~L~~A~~~g~~~----~v~~Ll~~g~~~~~~~g~t 86 (364)
T 3ljn_A 17 DDENMEKIH-VAARKGQTDEVRRLI----ETGVSPTIQNRFGCT-ALHLACKFGCVD----TAKYLASVGEVHSLWHGQK 86 (364)
T ss_dssp CHHHHHHHH-HHHHHTCHHHHHHHH----HTTCCTTCCCTTCCC-HHHHHHHHCCHH----HHHHHHHHCCCCCCBTTBC
T ss_pred CCCCCCHHH-HHHHcCCHHHHHHHH----HcCCCccccCCCCCc-HHHHHHHcCCHH----HHHHHHHCCCCccccCCCC
Confidence 333344443 344556665444444 445444432 222 333444556653 4455566665555433333
Q ss_pred HHHHHHcCCChHHHHHHHccCC----C--------------------CCeehHHHHHHHHHhCC--CHHHHHHHHHhCCC
Q 007808 141 LIELYSTGKAIEAAYKVFGEMD----E--------------------RNVVVWTSMINGYISCG--DIVSARCLFELAPE 194 (589)
Q Consensus 141 li~~~~~~g~~~~A~~~~~~~~----~--------------------~~~~~~~~l~~~~~~~g--~~~~a~~~~~~~~~ 194 (589)
.+...+..|+.+-+..+++... . .+..-+ +.+...+..| +.+-+..+++....
T Consensus 87 ~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-t~L~~A~~~g~~~~~~v~~Ll~~ga~ 165 (364)
T 3ljn_A 87 PIHLAVMANKTDLVVALVEGAKERGQMPESLLNECDEREVNEIGSHVKHCKGQ-TALHWCVGLGPEYLEMIKILVQLGAS 165 (364)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHTCCHHHHHTCCCCCCEEEETTEEEEESCC-CHHHHHHHSCGGGHHHHHHHHHHTCC
T ss_pred HHHHHHHcCCHHHHHHHHHhccccCCCHHHHHhhcchHhhhhhccccCCCCCC-CHHHHHHHcCCchHHHHHHHHHcCCC
Confidence 4444556677777776666511 1 011111 2334445666 66666666665443
Q ss_pred C---ChhHHHHHHHHHhcCCChHHHHHHhcccCC--------CChhhHHHHHHHHHhcCCHHHHHHHHhhC
Q 007808 195 R---DVILWNTIVSGYIDVRNMIEARKLFDQMPK--------KDVISWNTMLSGYANNGDVEECKRLFEEM 254 (589)
Q Consensus 195 ~---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--------~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 254 (589)
+ |..-.+ .+...+..|+.+-+..+++.... .+..-.+ -+...+..|+.+-+.-+++.-
T Consensus 166 ~~~~d~~g~t-~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~g~t-~L~~A~~~g~~~~v~~Ll~~g 234 (364)
T 3ljn_A 166 PTAKDKADET-PLMRAMEFRNREALDLMMDTVPSKSSLRLDYANKQGNS-HLHWAILINWEDVAMRFVEMG 234 (364)
T ss_dssp TTCCCTTSCC-HHHHHHHTTCHHHHHHHHHHCSCSSSCCTTCCCTTCCC-TTHHHHTTTCHHHHHHHHTTT
T ss_pred CcccCCCCCC-HHHHHHHcCCHHHHHHHHhcccccccccccccCCCCCc-HHHHHHHcCCHHHHHHHHHcC
Confidence 3 221122 23334566777777777764322 1222122 233445677777666666643
No 316
>3i5p_A Nucleoporin NUP170; helical stack, membrane, mRNA transport, nuclear pore complex, nucleus, phosphoprotein, protein transport; 3.20A {Saccharomyces cerevisiae}
Probab=33.06 E-value=3.7e+02 Score=26.50 Aligned_cols=68 Identities=10% Similarity=-0.028 Sum_probs=41.3
Q ss_pred CCCHHHHHHHHHHHhcCCCHHHHHHH----HHHHH-ccCCCCCcchHHHHHHHhhcCChHHHHHHHHHhhhCC
Q 007808 461 EADAVIWANLLGSCRVYKNVELAELA----LERLT-ELEPKNPANFVMLSNIYGDLGRWKDVARIKVAMRDTG 528 (589)
Q Consensus 461 ~p~~~~~~~l~~~~~~~g~~~~A~~~----~~~~~-~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 528 (589)
.+|......+-..+...|..++-+++ ++.-+ +..|++......|-.-|.+.|++-+|.+++..+...+
T Consensus 175 s~DelFH~~LYdWli~~gl~d~LL~i~sPfle~yL~r~~~~~~~~~dLLWryy~k~~~~~~AA~VL~~LA~s~ 247 (525)
T 3i5p_A 175 YNDRLFHYHMYDWLVSQNREEKLLDIETPFILPYLMEKAGSSLKISNILWVYYSRRSKFFESAEILYRLATSN 247 (525)
T ss_dssp SCCHHHHHHHHHHHHHTTCGGGGGGCCCTTHHHHHHHTCC---CHHHHHHTHHHHCCSHHHHHHHHHHHHSSS
T ss_pred CChHHHHHHHHHHHHhCCCcchhhcCCCchHHHHHHhcCccchhHHHHHHHHHHHcccHHHHHHHHHHHHhCC
Confidence 44555555555667777654433221 11111 2346666677777788889999999999999998664
No 317
>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}
Probab=29.86 E-value=2.4e+02 Score=24.58 Aligned_cols=17 Identities=6% Similarity=-0.029 Sum_probs=8.6
Q ss_pred HHhCCCHHHHHHHHHhC
Q 007808 176 YISCGDIVSARCLFELA 192 (589)
Q Consensus 176 ~~~~g~~~~a~~~~~~~ 192 (589)
.+..|+.+-+.-+++..
T Consensus 192 A~~~g~~~~v~~Ll~~G 208 (269)
T 4b93_B 192 AVIEKHVFVVELLLLHG 208 (269)
T ss_dssp HHHTTCHHHHHHHHHTT
T ss_pred HHHcCCHHHHHHHHHCC
Confidence 34555555555555443
No 318
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=29.56 E-value=2.7e+02 Score=23.93 Aligned_cols=195 Identities=15% Similarity=0.016 Sum_probs=93.5
Q ss_pred HHHHHHHHHhCCCCCccc--hHHHHHHHHccCChhHHHHHhhcCCCCC---cccHHHHHHHHHcCCChhHHHHHHHHhhh
Q 007808 19 HQIQTQVVTSGLEKSDYI--TPRIITACAQLKQMTYARKMFDKITDQN---VVSWNAMFNGYAQNEFHRTVVVLFTQMKK 93 (589)
Q Consensus 19 ~~~~~~~~~~g~~~~~~~--~~~l~~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~ll~~~~~~~~~~~a~~~~~~m~~ 93 (589)
..+...+.+.|..++... -...+...++.|+.+-+..+++....++ ...++.+ ...+..|+.+ +++.+.+
T Consensus 52 ~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L-~~A~~~~~~~----~~~~Ll~ 126 (285)
T 1wdy_A 52 EDIVELLLRHGADPVLRKKNGATPFLLAAIAGSVKLLKLFLSKGADVNECDFYGFTAF-MEAAVYGKVK----ALKFLYK 126 (285)
T ss_dssp HHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCBCTTCCBHH-HHHHHTTCHH----HHHHHHH
T ss_pred HHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCcccCCHH-HHHHHhCCHH----HHHHHHH
Confidence 356677778887766532 2245666667888888888887755433 2233333 3344556654 3444445
Q ss_pred CCCCCCcc------------cHHHHHHHHhccCChHHHHHHHHHHHHh-CCCCch---HHHhHHHHHHHcCCCh---HHH
Q 007808 94 LDAMPNCF------------TFPIVLKSCVKINALREGEELHCLVLKN-GFRANI---FVGTALIELYSTGKAI---EAA 154 (589)
Q Consensus 94 ~~~~p~~~------------~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~~~---~~~~~li~~~~~~g~~---~~A 154 (589)
.|..++.. .-...+...+..|+.+ +++.+++. |..++. ...+.|..+ +..|+. .+.
T Consensus 127 ~g~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~----~v~~Ll~~~~~~~~~~~~~g~t~l~~a-~~~~~~~~~~~i 201 (285)
T 1wdy_A 127 RGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVE----VLKILLDEMGADVNACDNMGRNALIHA-LLSSDDSDVEAI 201 (285)
T ss_dssp TTCCTTCCCCCCHHHHHTTCCCCCHHHHHHHHTCHH----HHHHHHHTSCCCTTCCCTTSCCHHHHH-HHCSCTTTHHHH
T ss_pred hCCCcccccccHHHHHhhccCCCcHHHHHHHcCCHH----HHHHHHHhcCCCCCccCCCCCCHHHHH-HHccccchHHHH
Confidence 55444322 0112333444556654 44444444 544332 223333333 334442 233
Q ss_pred HHHH-ccCCCCCee--hHHHHHHHHHhCCCHHHHHHHHHh-CCCC---ChhHHHHHHHHHhcCCChHHHHHHhcccC
Q 007808 155 YKVF-GEMDERNVV--VWTSMINGYISCGDIVSARCLFEL-APER---DVILWNTIVSGYIDVRNMIEARKLFDQMP 224 (589)
Q Consensus 155 ~~~~-~~~~~~~~~--~~~~l~~~~~~~g~~~~a~~~~~~-~~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 224 (589)
.+++ +.-...+.. .-.+.+...++.|+.+-+..+++. ...+ |.... +.+...++.|+.+-+.-+++.-.
T Consensus 202 ~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~~~~~~~~g~-t~l~~A~~~~~~~i~~~Ll~~Ga 277 (285)
T 1wdy_A 202 THLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGK-TALLLAVELKLKKIAELLCKRGA 277 (285)
T ss_dssp HHHHHHTTCCSSCCCTTSCCHHHHHHHTTCHHHHHHHHHSSSCCTTCCCTTSC-CHHHHHHHTTCHHHHHHHHHHSS
T ss_pred HHHHHHcCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHhccCCCccccCCCCC-cHHHHHHHcCcHHHHHHHHHcCC
Confidence 3333 221111111 111234455667888777777762 2222 22111 12333445677766666665443
No 319
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=29.45 E-value=3.6e+02 Score=25.34 Aligned_cols=224 Identities=12% Similarity=0.036 Sum_probs=120.8
Q ss_pred HHHHHHHHhCCCCCccc--hHHHHHHHHccCChhHHHHHhhcCCCCC---cccHHHHHHHHHcCCChhHHHHHHHHhhhC
Q 007808 20 QIQTQVVTSGLEKSDYI--TPRIITACAQLKQMTYARKMFDKITDQN---VVSWNAMFNGYAQNEFHRTVVVLFTQMKKL 94 (589)
Q Consensus 20 ~~~~~~~~~g~~~~~~~--~~~l~~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~ 94 (589)
.+...+.+.|..|+... ....+...++.|+.+-+..+++.....+ ...++ .+...+..|+.+-+. .+.+.
T Consensus 28 ~~v~~Ll~~g~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t-~L~~A~~~g~~~~v~----~Ll~~ 102 (437)
T 1n11_A 28 PIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNAKAKDDQT-PLHCAARIGHTNMVK----LLLEN 102 (437)
T ss_dssp HHHHHHHHTTCCSCCSSSCCCCHHHHHHHHTCHHHHHHHHHHTCCSSCCCTTSCC-HHHHHHHHTCHHHHH----HHHHH
T ss_pred HHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCC-HHHHHHHCCCHHHHH----HHHhC
Confidence 45666777888776532 2356677778899999999988765432 22233 344445566665443 33444
Q ss_pred CCCCCcc---cHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchH--HHhHHHHHHHcCCChHHHHHHHccCCCCCee--
Q 007808 95 DAMPNCF---TFPIVLKSCVKINALREGEELHCLVLKNGFRANIF--VGTALIELYSTGKAIEAAYKVFGEMDERNVV-- 167 (589)
Q Consensus 95 ~~~p~~~---~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~-- 167 (589)
|..|+.. -.+ .+...+..|+.+.+.. +++.+..++.. .-...+...+..|+.+-+..+++.-..++..
T Consensus 103 ga~~~~~~~~g~t-~L~~A~~~g~~~~v~~----Ll~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~ 177 (437)
T 1n11_A 103 NANPNLATTAGHT-PLHIAAREGHVETVLA----LLEKEASQACMTKKGFTPLHVAAKYGKVRVAELLLERDAHPNAAGK 177 (437)
T ss_dssp TCCTTCCCTTCCC-HHHHHHHHTCHHHHHH----HHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCS
T ss_pred CCCCCCCCCCCCc-HHHHHHHcCCHHHHHH----HHhCCCCCcCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCCCC
Confidence 5444322 222 3344456677655444 44455433211 1123445556778888887777754432221
Q ss_pred hHHHHHHHHHhCCCHHHHHHHHHhCCCCCh---hHHHHHHHHHhcCCChHHHHHHhcccCCC---ChhhHHHHHHHHHhc
Q 007808 168 VWTSMINGYISCGDIVSARCLFELAPERDV---ILWNTIVSGYIDVRNMIEARKLFDQMPKK---DVISWNTMLSGYANN 241 (589)
Q Consensus 168 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~ 241 (589)
.-.+.+...+..|+.+-+.-+++....++. ..+ ..+...+..|+.+-+..+++.-..+ +.... +.+...+..
T Consensus 178 ~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~-t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~-t~L~~A~~~ 255 (437)
T 1n11_A 178 NGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGY-TPLHIAAKQNQVEVARSLLQYGGSANAESVQGV-TPLHLAAQE 255 (437)
T ss_dssp SCCCHHHHHHHTTCHHHHHHHGGGTCCSCCCCTTCC-CHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCC-CHHHHHHHT
T ss_pred CCCCHHHHHHHcCCHHHHHHHHhCCCCCCCcCCCCC-CHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCC-CHHHHHHHC
Confidence 111234455677888777766665544321 111 2334456678888887777654332 21111 223344566
Q ss_pred CCHHHHHHHHhhCC
Q 007808 242 GDVEECKRLFEEMP 255 (589)
Q Consensus 242 ~~~~~A~~~~~~~~ 255 (589)
|+.+-+.-+++.-.
T Consensus 256 g~~~~v~~Ll~~~~ 269 (437)
T 1n11_A 256 GHAEMVALLLSKQA 269 (437)
T ss_dssp TCHHHHHHHHTTTC
T ss_pred CCHHHHHHHHhcCC
Confidence 77776666665433
No 320
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=29.41 E-value=5.2e+02 Score=27.86 Aligned_cols=52 Identities=10% Similarity=0.026 Sum_probs=38.1
Q ss_pred HHHHHHhcCCHHHHHHHHhhCCCCCchhHHHHHHHHHhCCChHHHHHHHHHHH
Q 007808 234 MLSGYANNGDVEECKRLFEEMPERNVFSWNGLIGGYANNGLFFEVLDAFKRML 286 (589)
Q Consensus 234 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 286 (589)
++..+...|..+-+.++...+.. +...-..+..+|...|++++|...|+++-
T Consensus 816 l~~~L~~~~~~~~a~eL~~~~~~-t~~~~yv~gr~~L~~ge~~~A~~~F~kAA 867 (950)
T 4gq2_M 816 LVEKLFLFKQYNACMQLIGWLNS-DPIAVYLKALIYLKSKEAVKAVRCFKTTS 867 (950)
T ss_dssp HHHHHHHTTCHHHHHHHGGGCCS-SHHHHHHHHHHHHHTTCHHHHHHHHHTCC
T ss_pred HHHHHHHhcHHHHHHHHHhhcCC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 55666778888877776666654 44444567788999999999999998763
No 321
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=28.76 E-value=3.2e+02 Score=24.52 Aligned_cols=36 Identities=11% Similarity=0.015 Sum_probs=17.9
Q ss_pred HHHHHHHhCCCCchHHHhHHHHHHHcCCChHHHHHHHcc
Q 007808 122 LHCLVLKNGFRANIFVGTALIELYSTGKAIEAAYKVFGE 160 (589)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 160 (589)
+.+.+++.|..++..+ .+...++.|+.+-+.-+++.
T Consensus 288 iv~~Ll~~GAd~n~~~---~L~~A~~~~~~~iv~~Ll~~ 323 (337)
T 4g8k_A 288 IAELLCKRGASTDCGD---LVMTARRNYDHSLVKVLLSH 323 (337)
T ss_dssp HHHHHHTTSCSSTTCC---HHHHHHHTTCHHHHHHHHHT
T ss_pred HHHHHHHCCCCCCCCC---HHHHHHHcCCHHHHHHHHHC
Confidence 4444556665555432 23334455666555555544
No 322
>3ygs_P Procaspase 9; apoptosis, caspase activation, caspase recruitment, recognition complex; 2.50A {Homo sapiens} SCOP: a.77.1.3
Probab=28.55 E-value=75 Score=22.76 Aligned_cols=37 Identities=19% Similarity=0.153 Sum_probs=28.7
Q ss_pred CChHHHHHHHhhCCCCCcchHHHHHHHHHhCCChHHH
Q 007808 344 GIIENAVDVFNSMDTKDLITWNTIISGLAMHGRGAGA 380 (589)
Q Consensus 344 g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 380 (589)
...+.|.++++.+..+++.+|..++.++...|+..-|
T Consensus 51 t~~~~ar~Lld~L~~rG~~Af~~F~~aL~et~~~~La 87 (97)
T 3ygs_P 51 SRRDQARQLIIDLETRGSQALPLFISCLEDTGQDMLA 87 (97)
T ss_dssp CHHHHHHHHHHHHTTSCTTHHHHHHHHHHTTTCHHHH
T ss_pred ChHHHHHHHHHHHHHcChHHHHHHHHHHHHcCcHHHH
Confidence 4678888888888888888888888888776765544
No 323
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=27.77 E-value=2.7e+02 Score=23.24 Aligned_cols=57 Identities=14% Similarity=0.055 Sum_probs=36.6
Q ss_pred CCChHHHHHHHHHHHHcCCCCCc-HHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC
Q 007808 272 NGLFFEVLDAFKRMLTEGRVFPN-DATIVTVLSACARLGALDFSKWVHVYAEYNGYQGN 329 (589)
Q Consensus 272 ~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 329 (589)
.+...++.++|..|...| +.-. ..-|......+...|++.+|.++|..-++.+-.|-
T Consensus 92 ~~~~~~p~~if~~L~~~~-IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P~ 149 (202)
T 3esl_A 92 SNNFHESENTFKYMFNKG-IGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRPY 149 (202)
T ss_dssp TTCHHHHHHHHHHHHHHT-SSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSH
T ss_pred ccccCCHHHHHHHHHHCC-CcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccH
Confidence 334557777777777776 4333 44555666666777777777777777776665553
No 324
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=27.14 E-value=2.7e+02 Score=23.19 Aligned_cols=20 Identities=10% Similarity=-0.065 Sum_probs=9.4
Q ss_pred HcCCChhHHHHHHHHhhhCC
Q 007808 76 AQNEFHRTVVVLFTQMKKLD 95 (589)
Q Consensus 76 ~~~~~~~~a~~~~~~m~~~~ 95 (589)
++.|+.+.+..+++.+.+.|
T Consensus 17 ~~~g~~~~v~~Ll~~~~~~~ 36 (241)
T 1k1a_A 17 VVQGNLPAVHRLVNLFQQGG 36 (241)
T ss_dssp HHTTCHHHHHHHHHHHHHTT
T ss_pred HHcCCHHHHHHHHHHHHhcC
Confidence 34455555555554444443
No 325
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=27.06 E-value=1.6e+02 Score=23.06 Aligned_cols=62 Identities=10% Similarity=0.060 Sum_probs=42.0
Q ss_pred HHhhhCCCCCCcccHHHHHHHHhccC-ChHHHHHHHHHHHHhCCCCchHHHhHHHHHHHcCCCh
Q 007808 89 TQMKKLDAMPNCFTFPIVLKSCVKIN-ALREGEELHCLVLKNGFRANIFVGTALIELYSTGKAI 151 (589)
Q Consensus 89 ~~m~~~~~~p~~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 151 (589)
+.+.+.|++++..-. .++..+...+ ..-.|.++++.+.+.++..+..|.-.-++.+...|-+
T Consensus 6 ~~l~~~g~r~T~qR~-~Il~~L~~~~~~h~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv 68 (150)
T 2w57_A 6 QALKDAGLKVTLPRL-KILEVLQQPECQHISAEELYKKLIDLGEEIGLATVYRVLNQFDDAGIV 68 (150)
T ss_dssp HHHHHTTCCCCHHHH-HHHHHHTSGGGSSEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSE
T ss_pred HHHHHcCCCCCHHHH-HHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCcE
Confidence 446677877766544 3455555555 6778999999998887766666655566677776644
No 326
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=26.98 E-value=3.1e+02 Score=25.04 Aligned_cols=25 Identities=16% Similarity=0.223 Sum_probs=13.9
Q ss_pred HHHHHHHhCCCHHHHHHHHHhCCCC
Q 007808 171 SMINGYISCGDIVSARCLFELAPER 195 (589)
Q Consensus 171 ~l~~~~~~~g~~~~a~~~~~~~~~~ 195 (589)
.++.-|...|+.++|.+.++++..|
T Consensus 16 ~ll~Ey~~~~d~~Ea~~ci~el~~p 40 (339)
T 1ug3_A 16 AIIEEYLHLNDMKEAVQCVQELASP 40 (339)
T ss_dssp HHHHHHHHHCCHHHHHHHHHTTCCG
T ss_pred HHHHHHHhCCCHHHHHHHHHHcCCc
Confidence 4455555555666666655555544
No 327
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=26.50 E-value=2.8e+02 Score=23.12 Aligned_cols=142 Identities=9% Similarity=0.016 Sum_probs=63.9
Q ss_pred cCCchHHHHHHHHHHhCCCCCccc--hHHHHHHHHccCChhHHHHHhhcCCCCCc---ccHHHHHHHHHcCCChhHHHHH
Q 007808 13 ETTKHLHQIQTQVVTSGLEKSDYI--TPRIITACAQLKQMTYARKMFDKITDQNV---VSWNAMFNGYAQNEFHRTVVVL 87 (589)
Q Consensus 13 ~~~~~~~~~~~~~~~~g~~~~~~~--~~~l~~~~~~~~~~~~A~~~~~~~~~~~~---~~~~~ll~~~~~~~~~~~a~~~ 87 (589)
++.+.++.+.+.+.+.|..++... -.+.+...+..|+.+-+..+++....++. ..+ ..+...+..|+.+-+..+
T Consensus 20 g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~-t~l~~A~~~~~~~~~~~L 98 (241)
T 1k1a_A 20 GNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGASPMALDRHGQ-TAAHLACEHRSPTCLRAL 98 (241)
T ss_dssp TCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSC-CHHHHHHHTTCHHHHHHH
T ss_pred CCHHHHHHHHHHHHhcCCCCCcccccCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCC-CHHHHHHHcCCHHHHHHH
Confidence 344445556665556666555432 22345555566777777766665444322 122 223333455665555545
Q ss_pred HHHhhhCCCCCC---cccHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchH---HHhHHHHHHHcCCChHHHHHHHcc
Q 007808 88 FTQMKKLDAMPN---CFTFPIVLKSCVKINALREGEELHCLVLKNGFRANIF---VGTALIELYSTGKAIEAAYKVFGE 160 (589)
Q Consensus 88 ~~~m~~~~~~p~---~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~li~~~~~~g~~~~A~~~~~~ 160 (589)
++.....++.++ ..-.+. +...+..|+. ++++.+++.|..++.. .....+...+..|+.+-+.-+++.
T Consensus 99 l~~~~~~~~~~~~~~~~g~t~-L~~A~~~~~~----~~~~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ 172 (241)
T 1k1a_A 99 LDSAAPGTLDLEARNYDGLTA-LHVAVNTECQ----ETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQH 172 (241)
T ss_dssp HHHSCTTSCCTTCCCTTSCCH-HHHHHHHTCH----HHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHT
T ss_pred HHcCCCccccccccCcCCCcH-HHHHHHcCCH----HHHHHHHHcCCCcccccccCCCcHHHHHHHcCCHHHHHHHHHc
Confidence 544332111111 111222 2223333443 3444555555544321 122333444455665555555544
No 328
>1wgl_A TOLL-interacting protein; CUE domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, immune system; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=26.20 E-value=62 Score=20.70 Aligned_cols=22 Identities=9% Similarity=-0.006 Sum_probs=12.3
Q ss_pred hcCChHHHHHHHHHhhhCCCcc
Q 007808 510 DLGRWKDVARIKVAMRDTGFKK 531 (589)
Q Consensus 510 ~~g~~~~A~~~~~~~~~~~~~~ 531 (589)
..|+.+.|+..+-.|...+..|
T Consensus 35 ~~gdvd~aI~~LL~m~~~~~~~ 56 (59)
T 1wgl_A 35 QRGNKDAAINSLLQMGEEPSGP 56 (59)
T ss_dssp TTTCHHHHHHHHHHSSCCCCSC
T ss_pred cCCCHHHHHHHHHcCcCCCCCC
Confidence 3456666666666665444433
No 329
>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1
Probab=25.89 E-value=75 Score=22.43 Aligned_cols=25 Identities=4% Similarity=0.016 Sum_probs=18.0
Q ss_pred chHHHHHHHhhcCChHHHHHHHHHh
Q 007808 500 NFVMLSNIYGDLGRWKDVARIKVAM 524 (589)
Q Consensus 500 ~~~~l~~~~~~~g~~~~A~~~~~~~ 524 (589)
.+...++.+.+.|+|++|++..++.
T Consensus 17 ~~~RrAe~ll~~gkydeAIech~kA 41 (97)
T 2crb_A 17 QQSRRADRLLAAGKYEEAISCHRKA 41 (97)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HhhhHHHHHHhcCCHHHHHHHHHHH
Confidence 4455667788888888887766655
No 330
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=25.78 E-value=2.9e+02 Score=22.98 Aligned_cols=15 Identities=13% Similarity=0.255 Sum_probs=9.0
Q ss_pred HHHHHHHHhCCCCCc
Q 007808 20 QIQTQVVTSGLEKSD 34 (589)
Q Consensus 20 ~~~~~~~~~g~~~~~ 34 (589)
.+...+.+.|..++.
T Consensus 89 ~~v~~Ll~~g~~~~~ 103 (232)
T 2rfa_A 89 NLVRALLARGASVSA 103 (232)
T ss_dssp HHHHHHHHTTCCTTC
T ss_pred HHHHHHHhCCCCCCc
Confidence 455566666666554
No 331
>1oai_A Nuclear RNA export factor; nuclear transport, nuclear transport factor; 1.0A {Homo sapiens} SCOP: a.5.2.3
Probab=25.35 E-value=60 Score=20.74 Aligned_cols=25 Identities=20% Similarity=0.235 Sum_probs=20.1
Q ss_pred hCCChHHHHHHHHHHHHcCCCCCcH
Q 007808 271 NNGLFFEVLDAFKRMLTEGRVFPND 295 (589)
Q Consensus 271 ~~g~~~~A~~~~~~~~~~~~~~p~~ 295 (589)
..-+++.|+..|.++...|.++|+.
T Consensus 32 ~~Wd~~~A~~~F~~l~~~~~IP~eA 56 (59)
T 1oai_A 32 NNWDYTRSAQAFTHLKAKGEIPEVA 56 (59)
T ss_dssp TTTCHHHHHHHHHHHHHTTCSCGGG
T ss_pred cCCCHHHHHHHHHHHHHcCCCCHHH
Confidence 3568999999999998887677764
No 332
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=24.99 E-value=1.1e+02 Score=23.79 Aligned_cols=61 Identities=7% Similarity=-0.019 Sum_probs=33.4
Q ss_pred HhhhCCCCCCcccHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchHHHhHHHHHHHcCCCh
Q 007808 90 QMKKLDAMPNCFTFPIVLKSCVKINALREGEELHCLVLKNGFRANIFVGTALIELYSTGKAI 151 (589)
Q Consensus 90 ~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 151 (589)
.+.+.|++++..-. .++..+...+..-.|.++++.+.+.++..+..|.-.-++.+...|-+
T Consensus 12 ~l~~~g~r~T~qR~-~Il~~L~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv 72 (145)
T 2fe3_A 12 TLKETGVRITPQRH-AILEYLVNSMAHPTADDIYKALEGKFPNMSVATVYNNLRVFRESGLV 72 (145)
T ss_dssp HHHHTTCCCCHHHH-HHHHHHHHCSSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTTSE
T ss_pred HHHHcCCCCCHHHH-HHHHHHHhCCCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHCCCE
Confidence 34556666554433 23334444455566777777776666555555544455566665543
No 333
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=24.63 E-value=1.7e+02 Score=22.72 Aligned_cols=12 Identities=0% Similarity=0.085 Sum_probs=5.3
Q ss_pred cHHHHHHHHHHh
Q 007808 411 LVEEGLSYFQSM 422 (589)
Q Consensus 411 ~~~~A~~~~~~~ 422 (589)
..-.|.++++.+
T Consensus 36 ~~~sa~ei~~~l 47 (145)
T 2fe3_A 36 AHPTADDIYKAL 47 (145)
T ss_dssp SCCCHHHHHHHH
T ss_pred CCCCHHHHHHHH
Confidence 333444444444
No 334
>2b7e_A PRE-mRNA processing protein PRP40; structural protein; NMR {Saccharomyces cerevisiae} SCOP: a.159.2.1
Probab=24.20 E-value=77 Score=20.25 Aligned_cols=30 Identities=13% Similarity=0.204 Sum_probs=21.1
Q ss_pred hhHHHHHHHHhhhCCCCCCcccHHHHHHHH
Q 007808 81 HRTVVVLFTQMKKLDAMPNCFTFPIVLKSC 110 (589)
Q Consensus 81 ~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~ 110 (589)
.++|.+.|.+|++..-.++..||...++.+
T Consensus 2 ~eEae~aF~~lL~~~~V~s~wsweqamr~i 31 (59)
T 2b7e_A 2 AMEAEKEFITMLKENQVDSTWSFSRIISEL 31 (59)
T ss_dssp TTHHHHHHHHHHHHTTCCSSCCHHHHHHHH
T ss_pred hhHHHHHHHHHHHHcCCCCCCcHHHHHHHh
Confidence 356777777776665455667788888777
No 335
>3ygs_P Procaspase 9; apoptosis, caspase activation, caspase recruitment, recognition complex; 2.50A {Homo sapiens} SCOP: a.77.1.3
Probab=23.85 E-value=87 Score=22.41 Aligned_cols=37 Identities=5% Similarity=0.045 Sum_probs=27.4
Q ss_pred CChhHHHHHhhcCCCCCcccHHHHHHHHHcCCChhHH
Q 007808 48 KQMTYARKMFDKITDQNVVSWNAMFNGYAQNEFHRTV 84 (589)
Q Consensus 48 ~~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a 84 (589)
.+.+.|+++++.+++....+|..++.++...|+..-|
T Consensus 51 t~~~~ar~Lld~L~~rG~~Af~~F~~aL~et~~~~La 87 (97)
T 3ygs_P 51 SRRDQARQLIIDLETRGSQALPLFISCLEDTGQDMLA 87 (97)
T ss_dssp CHHHHHHHHHHHHTTSCTTHHHHHHHHHHTTTCHHHH
T ss_pred ChHHHHHHHHHHHHHcChHHHHHHHHHHHHcCcHHHH
Confidence 4678888888888887778888888888766655444
No 336
>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*
Probab=23.61 E-value=2.6e+02 Score=21.64 Aligned_cols=112 Identities=9% Similarity=-0.017 Sum_probs=51.3
Q ss_pred HHHHHHccCChhHHHHHhhcCCC----CCcccHHHHHHHHHcCCChhHHHHHHHHhhhCCCCCCcccH--HHHHHHHhcc
Q 007808 40 IITACAQLKQMTYARKMFDKITD----QNVVSWNAMFNGYAQNEFHRTVVVLFTQMKKLDAMPNCFTF--PIVLKSCVKI 113 (589)
Q Consensus 40 l~~~~~~~~~~~~A~~~~~~~~~----~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~--~~ll~~~~~~ 113 (589)
.+...++.|+++....+++.... .+..-++. +...+..|+.+ +++.+.+.|..++.... .+.+...+..
T Consensus 11 ~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~-L~~A~~~~~~~----~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~ 85 (165)
T 3twr_A 11 QLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTP-LHFAAGYNRVS----VVEYLLQHGADVHAKDKGGLVPLHNACSY 85 (165)
T ss_dssp HHHHHHHHTCHHHHHHHCCTTTTTCCCTTTTCCCH-HHHHHHTTCHH----HHHHHHHTTCCTTCCCTTSCCHHHHHHHT
T ss_pred HHHHHHHhCCHHHHHHHHHcCCCCccccccCCCCH-HHHHHHcChHH----HHHHHHhcCCCCCccCCCCCCHHHHHHHc
Confidence 44455567788888887764332 22222233 33334555543 34444445544443321 1223333444
Q ss_pred CChHHHHHHHHHHHHhCCCCchHH--HhHHHHHHHcCCChHHHHHHHcc
Q 007808 114 NALREGEELHCLVLKNGFRANIFV--GTALIELYSTGKAIEAAYKVFGE 160 (589)
Q Consensus 114 ~~~~~a~~~~~~~~~~~~~~~~~~--~~~li~~~~~~g~~~~A~~~~~~ 160 (589)
|+.+ +.+.+++.|..++... -.+-+...+..|+.+-+..+++.
T Consensus 86 ~~~~----~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ 130 (165)
T 3twr_A 86 GHYE----VAELLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQH 130 (165)
T ss_dssp TCHH----HHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHT
T ss_pred CcHH----HHHHHHhCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHc
Confidence 5544 4445555665443221 11223334445555555544443
No 337
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=23.44 E-value=5.1e+02 Score=25.01 Aligned_cols=129 Identities=15% Similarity=0.035 Sum_probs=59.8
Q ss_pred HHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHhhCCCC---CcchHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHh
Q 007808 321 AEYNGYQGNVCVGNALIDMYAKCGIIENAVDVFNSMDTK---DLITWNTIISGLAMHGRGAGALSLFHEMKNAGEMPDGI 397 (589)
Q Consensus 321 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~ 397 (589)
+.+.|++.....|..-.+.+...|++++|-++--..+.. ++.+.+.+-..=..-|+..--+.+|..+.+.| ..+..
T Consensus 352 A~R~~LpGAd~L~~~~F~~l~~~g~y~~AA~~aA~sP~giLRt~~Ti~rFk~vp~~pgq~splL~YF~~Ll~~g-~Ln~~ 430 (494)
T 1bpo_A 352 AVRNNLAGAEELFARKFNALFAQGNYSEAAKVAANAPKGILRTPDTIRRFQSVPAQPGQTSPLLQYFGILLDQG-QLNKY 430 (494)
T ss_dssp HHHTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSGGGSSCSHHHHHHHTTSCCCTTSCCHHHHHHHHHHHHS-CCCHH
T ss_pred HHhcCCccHHHHHHHHHHHHHHcCCHHHHHHHHHhCccccccCHHHHHHHhcCCCCCCCCCHHHHHHHHHhccC-ccchH
Confidence 344555555555665566666777777777665544321 22222222222222344444555555555554 33332
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHhhCC
Q 007808 398 TFIGILCACTHMGLVEEGLSYFQSMAMDYSIVPQIEHYGCMVDLLARAGRLAEAVDFVKRMP 459 (589)
Q Consensus 398 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 459 (589)
--.-+++.-...|+.+-..+.+.+ ..+..+... .+.. +..+..-|+.+|.+..
T Consensus 431 ESlEl~r~vL~q~r~~llekWl~e----~KL~~SEeL----GDlv-k~~d~~LAl~IY~~a~ 483 (494)
T 1bpo_A 431 ESLELCRPVLQQGRKQLLEKWLKE----DKLECSEEL----GDLV-KSVDPTLALSVYLRAN 483 (494)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHH----TCSCCCHHH----HHHH-HHHCSHHHHHHHHHHC
T ss_pred HhhHHhHHHHhccHHHHHHHHHhc----CCccccHHh----Hhhh-hhcCHHHHHHHHHHcC
Confidence 222344444444554444444332 234444332 2211 3335555666666554
No 338
>2cfu_A SDSA1; SDS-hydrolase, lactamase, hydrolase; HET: 1DB; 1.9A {Pseudomonas aeruginosa} SCOP: d.106.1.3 d.157.1.13 PDB: 2cfz_A* 2cg2_A 2cg3_A*
Probab=23.36 E-value=1.1e+02 Score=31.31 Aligned_cols=62 Identities=19% Similarity=0.130 Sum_probs=47.3
Q ss_pred HHHHHHHHhhCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHccCCCCCcchHHHHHHHhhcC
Q 007808 448 LAEAVDFVKRMPIEADAVIWANLLGSCRVYKNVELAELALERLTELEPKNPANFVMLSNIYGDLG 512 (589)
Q Consensus 448 ~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 512 (589)
.+.|.++.+-|+ ...............|++..|.++.+.++..+|+|..+...++++|.+.|
T Consensus 436 ~~~a~~~v~~~g---g~~~~~~~a~~~~~~g~~~wa~~l~~~~~~~~p~~~~a~~l~a~~~~~l~ 497 (658)
T 2cfu_A 436 EDSAGRYVEYMG---GAERLLEQARASYARGEYRWVVEVVNRLVFAEPDNRAARELQADALEQLG 497 (658)
T ss_dssp HHHHHHHHHHTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhc---CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHH
Confidence 355666777775 22223334455668899999999999999999999999999999988776
No 339
>3qye_A TBC1 domain family member 1; rabgap, RAB, myocytes, hydrolase activator; 2.20A {Homo sapiens} PDB: 3qyb_A
Probab=23.17 E-value=4.2e+02 Score=23.99 Aligned_cols=128 Identities=5% Similarity=0.100 Sum_probs=73.1
Q ss_pred ChhHHHHHHHHhhhC-C----CCCCcccHHHH---HHHHhccCChHHHHHHHHHHHHhCCCCchHHHhHHHHHHHcCCCh
Q 007808 80 FHRTVVVLFTQMKKL-D----AMPNCFTFPIV---LKSCVKINALREGEELHCLVLKNGFRANIFVGTALIELYSTGKAI 151 (589)
Q Consensus 80 ~~~~a~~~~~~m~~~-~----~~p~~~~~~~l---l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 151 (589)
+-++|.-+|..+... + ..|+....... +..+.+..+ -+++..+.+.|+.|...+..-++..+++.=.+
T Consensus 164 ~E~~aF~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~----p~L~~hL~~~~i~~~~~~~~W~l~lF~~~lp~ 239 (331)
T 3qye_A 164 SEEEAFKMLKFLMFDMGLRKQYRPDMIILQIQMYQLSRLLHDYH----RDLYNHLEEHEIGPSLYAAPWFLTMFASQFPL 239 (331)
T ss_dssp CHHHHHHHHHHHHTTTCGGGGGSTTCHHHHHHHHHHHHHHHHHC----HHHHHHHHHTTCCGGGTSHHHHHSTTTTTSCH
T ss_pred hHHHHHHHHHHHHHhcCchhcCCCChHHHHHHHHHHHHHHHHHH----HHHHHHHHHcCCChHHHHHHHHHHHhhhhCCH
Confidence 556788888776543 1 23443222221 122222222 35777778888888888888888888877778
Q ss_pred HHHHHHHccCCC--CCeehHHH--HH----HHHHhCCCHHHHHHHHHhCC-CCChhHHHHHHHHHhcCC
Q 007808 152 EAAYKVFGEMDE--RNVVVWTS--MI----NGYISCGDIVSARCLFELAP-ERDVILWNTIVSGYIDVR 211 (589)
Q Consensus 152 ~~A~~~~~~~~~--~~~~~~~~--l~----~~~~~~g~~~~a~~~~~~~~-~~~~~~~~~l~~~~~~~g 211 (589)
+.+.++++.+.. +....+-+ ++ .......+.++....++... ..+......++.-.....
T Consensus 240 ~~~lrlwD~~l~~g~~~l~~valaiL~~~~~~ll~~~~~~~il~~l~~~~p~~~~~di~~li~~A~~l~ 308 (331)
T 3qye_A 240 GFVARVFDMIFLQGTEVIFKVALSLLGSHKPLILQHENLETIVDFIKSTLPNLGLVQMEKTINQVFEMD 308 (331)
T ss_dssp HHHHHHHHHHHHHCTTHHHHHHHHHHHHTHHHHHTCCSHHHHHHHHHHTTTCCCHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHhCC
Confidence 888888887753 22221111 11 12233457888888888743 344444455554444433
No 340
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=22.73 E-value=1.6e+02 Score=22.52 Aligned_cols=60 Identities=7% Similarity=0.055 Sum_probs=37.8
Q ss_pred HhhhCCCCCCcccHHHHHHHHhccC-ChHHHHHHHHHHHHhCCCCchHHHhHHHHHHHcCCC
Q 007808 90 QMKKLDAMPNCFTFPIVLKSCVKIN-ALREGEELHCLVLKNGFRANIFVGTALIELYSTGKA 150 (589)
Q Consensus 90 ~m~~~~~~p~~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 150 (589)
.+++.|.+++..-. .++..+...+ ..-.|.++++.+.+.++..+..|.-.-++.+...|-
T Consensus 8 ~l~~~g~r~T~qR~-~Il~~L~~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Gl 68 (136)
T 1mzb_A 8 ELRKAGLKVTLPRV-KILQMLDSAEQRHMSAEDVYKALMEAGEDVGLATVYRVLTQFEAAGL 68 (136)
T ss_dssp HHHHTTCCCCHHHH-HHHHHHHCC-CCSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTS
T ss_pred HHHHCCCCCCHHHH-HHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCc
Confidence 45667777666544 3445555555 677888999988887766666555455566665553
No 341
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=22.48 E-value=3.2e+02 Score=22.69 Aligned_cols=162 Identities=11% Similarity=0.031 Sum_probs=81.4
Q ss_pred HHHHHHHh-CCCCCccc--hHHHHHHHHccCChhHHHHHhhcCCCC--------CcccHHHHHHHHHcCCChhHHHHHHH
Q 007808 21 IQTQVVTS-GLEKSDYI--TPRIITACAQLKQMTYARKMFDKITDQ--------NVVSWNAMFNGYAQNEFHRTVVVLFT 89 (589)
Q Consensus 21 ~~~~~~~~-g~~~~~~~--~~~l~~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~ll~~~~~~~~~~~a~~~~~ 89 (589)
+...+.+. |..++... -.+.+...+..|+.+-+..+++....+ +..-++.+ ...+..|+.+-+ +
T Consensus 18 ~v~~Ll~~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~g~t~L-~~A~~~~~~~~v----~ 92 (232)
T 2rfa_A 18 ALSKLLKFEGCEVHQRGAMGETALHIAALYDNLEAAMVLMEAAPELVFEPMTSELYEGQTAL-HIAVINQNVNLV----R 92 (232)
T ss_dssp HHHHHHTTTCSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCGGGGGCCCCSTTTTTCCHH-HHHHHTTCHHHH----H
T ss_pred HHHHHHHhcCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHcCchhccccccccCCCCcCHH-HHHHHcCCHHHH----H
Confidence 33444444 76655432 234566666788999888888765431 22233333 334456665433 4
Q ss_pred HhhhCCCCCCccc---------------HHHHHHHHhccCChHHHHHHHHHHHHhCCCCchH--HHhHHHHHHHcCCChH
Q 007808 90 QMKKLDAMPNCFT---------------FPIVLKSCVKINALREGEELHCLVLKNGFRANIF--VGTALIELYSTGKAIE 152 (589)
Q Consensus 90 ~m~~~~~~p~~~~---------------~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~li~~~~~~g~~~ 152 (589)
.+.+.|..++... -...+...+..|+.+ +.+.+++.|..++.. .-.+-+...+..|+.+
T Consensus 93 ~Ll~~g~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~----~v~~Ll~~ga~~~~~d~~g~t~L~~A~~~~~~~ 168 (232)
T 2rfa_A 93 ALLARGASVSARATGSVFHYRPHNLIYYGEHPLSFAACVGSEE----IVRLLIEHGADIRAQDSLGNTVLHILILQPNKT 168 (232)
T ss_dssp HHHHTTCCTTCCCCSGGGSCCTTCSCCCCSSHHHHHHHHTCHH----HHHHHHHTTCCTTCCCTTSCCHHHHHHTCSCHH
T ss_pred HHHhCCCCCCcccCCcceeecccccccCCCCHHHHHHHcCCHH----HHHHHHHCCCCCCCCCCCCCCHHHHHHHcCChH
Confidence 4444454444321 222344444556654 455556667655432 1223445556777777
Q ss_pred HHHHHHccCCC-------------CCeehHHHHHHHHHhCCCHHHHHHHHHhC
Q 007808 153 AAYKVFGEMDE-------------RNVVVWTSMINGYISCGDIVSARCLFELA 192 (589)
Q Consensus 153 ~A~~~~~~~~~-------------~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 192 (589)
-+..+++.+.+ +|..-+ +-+...++.|+.+-+.-+++..
T Consensus 169 ~~~~i~~~Ll~~g~~~~~~~~~~~~~~~g~-tpl~~A~~~g~~~~v~~Ll~~g 220 (232)
T 2rfa_A 169 FACQMYNLLLSYDGGDHLKSLELVPNNQGL-TPFKLAGVEGNIVMFQHLMQKR 220 (232)
T ss_dssp HHHHHHHHHHHTTCSCSSCCGGGCCCTTSC-CHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCchhhhhhhccCCCCCC-CHHHHHHHcCCHHHHHHHHhcC
Confidence 66333322211 111111 2344555677777666666543
No 342
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=22.24 E-value=3.6e+02 Score=22.87 Aligned_cols=47 Identities=11% Similarity=0.001 Sum_probs=25.6
Q ss_pred cCCchHHHHHHHHHHhCCCCCccch-------HHHHHHHH--ccCChhHHHHHhhc
Q 007808 13 ETTKHLHQIQTQVVTSGLEKSDYIT-------PRIITACA--QLKQMTYARKMFDK 59 (589)
Q Consensus 13 ~~~~~~~~~~~~~~~~g~~~~~~~~-------~~l~~~~~--~~~~~~~A~~~~~~ 59 (589)
++...++.+.+.+.+.|..++...+ +.|..+.. +.|+.+-+..+++.
T Consensus 16 g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~ 71 (260)
T 3jxi_A 16 GSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDI 71 (260)
T ss_dssp TCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHh
Confidence 4455556677777777766664332 22222221 55666666666654
No 343
>3bqo_A Telomeric repeat-binding factor 1; TRF1 TRFH domain dimerization domain TIN2, ADP-ribosylation, alternative splicing, cell cycle, cell division; 2.00A {Homo sapiens} SCOP: a.146.1.1 PDB: 3l82_A 1h6o_A
Probab=21.67 E-value=2.3e+02 Score=23.50 Aligned_cols=44 Identities=9% Similarity=0.034 Sum_probs=29.5
Q ss_pred hhHHHHHhhcCCCCCccc--------HHHHHHHHHcCCChhHHHHHHHHhhh
Q 007808 50 MTYARKMFDKITDQNVVS--------WNAMFNGYAQNEFHRTVVVLFTQMKK 93 (589)
Q Consensus 50 ~~~A~~~~~~~~~~~~~~--------~~~ll~~~~~~~~~~~a~~~~~~m~~ 93 (589)
++.|+-+|+.+.+--... --..+..|.+.|.+++|.++|++.-.
T Consensus 94 LESAl~v~~~I~~e~~~lheei~~Llk~qAV~VCiekg~Fk~A~eiLkr~f~ 145 (211)
T 3bqo_A 94 LESALMIWGSIEKEHDKLHEEIQNLIKIQAIAVCMENGNFKEAEEVFERIFG 145 (211)
T ss_dssp HHHHHHHHTTSCSCCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHhc
Confidence 578888888887621111 11334568888999999999988544
No 344
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=21.64 E-value=1e+02 Score=23.44 Aligned_cols=36 Identities=14% Similarity=0.200 Sum_probs=15.6
Q ss_pred CChHHHHHHHHHHHHhCCCCchHHHhHHHHHHHcCC
Q 007808 114 NALREGEELHCLVLKNGFRANIFVGTALIELYSTGK 149 (589)
Q Consensus 114 ~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 149 (589)
+..-.|.++++.+.+.++..+..|.-..++.+...|
T Consensus 24 ~~~~sa~ei~~~l~~~~~~is~~TVYR~L~~L~e~G 59 (131)
T 2o03_A 24 DDFRSAQELHDELRRRGENIGLTTVYRTLQSMASSG 59 (131)
T ss_dssp CSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHTTT
T ss_pred CCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCC
Confidence 334445555555544443333333333344444444
No 345
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=20.93 E-value=3.6e+02 Score=22.29 Aligned_cols=84 Identities=10% Similarity=-0.047 Sum_probs=42.3
Q ss_pred HHHHHHcCCChhHHHHHHHHhhhCCCCCCcccHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchH---HHhHHHHHHHc
Q 007808 71 MFNGYAQNEFHRTVVVLFTQMKKLDAMPNCFTFPIVLKSCVKINALREGEELHCLVLKNGFRANIF---VGTALIELYST 147 (589)
Q Consensus 71 ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~li~~~~~ 147 (589)
.+...++.|+.+....+++.-...-..++..-.+.|.. .+..|+.+ +++.+++.|..++.. ..+ .+...+.
T Consensus 9 ~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~-A~~~g~~~----~v~~Ll~~g~~~~~~~~~g~t-~L~~A~~ 82 (231)
T 3aji_A 9 MICNLAYSGKLDELKERILADKSLATRTDQDSRTALHW-ACSAGHTE----IVEFLLQLGVPVNDKDDAGWS-PLHIAAS 82 (231)
T ss_dssp HHHHHHHHTCHHHHHHHHHHCGGGGGCCCTTSCCHHHH-HHHHTCHH----HHHHHHHTTCCSCCCCTTSCC-HHHHHHH
T ss_pred hHHHHHHhCCHHHHHHHHHhchhhhhcCCCCCCCHHHH-HHHcCcHH----HHHHHHHhCCCCCCcCCCCCC-HHHHHHH
Confidence 45566677888888777766433211223333333333 34455543 445555666554432 222 2333444
Q ss_pred CCChHHHHHHHcc
Q 007808 148 GKAIEAAYKVFGE 160 (589)
Q Consensus 148 ~g~~~~A~~~~~~ 160 (589)
.|+.+-+..+++.
T Consensus 83 ~~~~~~v~~Ll~~ 95 (231)
T 3aji_A 83 AGXDEIVKALLVK 95 (231)
T ss_dssp HTCHHHHHHHHHT
T ss_pred cCHHHHHHHHHHc
Confidence 5666655555544
No 346
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=20.89 E-value=3.4e+02 Score=22.01 Aligned_cols=80 Identities=15% Similarity=0.106 Sum_probs=49.2
Q ss_pred HhcCChHHHHHHHhhCCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHHCCCC--C--------------CH-hHHHHHH
Q 007808 341 AKCGIIENAVDVFNSMDTKDLITWNTIISGLAMHGRGAGALSLFHEMKNAGEM--P--------------DG-ITFIGIL 403 (589)
Q Consensus 341 ~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~--p--------------~~-~~~~~l~ 403 (589)
.-.|.+..++-++.....-...-|..| +|-+.+++.+|+..++.+....+. | |. .-|+.+.
T Consensus 44 yyngEY~R~Lf~L~~lNT~Ts~YYk~L--Cy~klKdYkkA~~~le~il~~kvd~d~~~d~~~~~ffvd~~DkEfFy~l~a 121 (242)
T 3kae_A 44 YLNGEYTRALFHLHKLNTCTSKYYESL--CYKKKKDYKKAIKSLESILEGKVERDPDVDARIQEMFVDPGDEEFFESLLG 121 (242)
T ss_dssp HHTTCHHHHHHHHHTCCBHHHHHHHHH--HHHHTTCHHHHHHHHHHHHTTCSBCCCCCCHHHHTTSCCTTCHHHHHHHHH
T ss_pred hhcchHhHHHHHHHhcchHHHHHHHHH--HHHHHHHHHHHHHHHHHHHhcccccCcccccccceeeeccchHHHHHHHHH
Confidence 345677777766665432222223322 456678888888888888754443 1 11 2356666
Q ss_pred HHHhccCcHHHHHHHHHHh
Q 007808 404 CACTHMGLVEEGLSYFQSM 422 (589)
Q Consensus 404 ~~~~~~g~~~~A~~~~~~~ 422 (589)
..|.+.|+.++|+..+...
T Consensus 122 ~lltq~g~r~EaI~y~~~S 140 (242)
T 3kae_A 122 DLCTLSGYREEGIGHYVRS 140 (242)
T ss_dssp HHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHhcCHHHhhhHhhhh
Confidence 6778888888888877654
No 347
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=20.82 E-value=3.3e+02 Score=21.93 Aligned_cols=92 Identities=14% Similarity=0.068 Sum_probs=53.5
Q ss_pred HHHccCChhHHHHHhhcCCCC-C-cccHHHHHHHHHcCCChhHHHHHHHHhhhCCCCCCcc---cHHHHHHHHhc-cCCh
Q 007808 43 ACAQLKQMTYARKMFDKITDQ-N-VVSWNAMFNGYAQNEFHRTVVVLFTQMKKLDAMPNCF---TFPIVLKSCVK-INAL 116 (589)
Q Consensus 43 ~~~~~~~~~~A~~~~~~~~~~-~-~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~---~~~~ll~~~~~-~~~~ 116 (589)
..++.|+++....++..-... + ..-+ +.+...+..|+.+.-.++.+.+.+.|..++.. -.+.|..++.. ..+.
T Consensus 12 ~Aa~~g~~~~~~~l~~~~~~~~~~~~g~-T~Lh~A~~~~~~~~~~~iv~~Ll~~Gadvn~~d~~g~TpLh~a~~~~~~~~ 90 (186)
T 3t8k_A 12 AAAMLGTYEDFLELFEKGYEDKESVLKS-NILYDVLRNNNDEARYKISMFLINKGADIKSRTKEGTTLFFPLFQGGGNDI 90 (186)
T ss_dssp HHHHHSCHHHHHHHHHHSSSCHHHHHTT-THHHHHTTCSCHHHHHHHHHHHHHTTCCSSCCCTTCCCTHHHHHHHCTTCH
T ss_pred HHHHcCCHHHHHHHHhcCcccccccCCC-CHHHHHHHcCCcchHHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCcch
Confidence 345678888888887764321 1 1122 34445556677666677777788888766543 22333332222 2334
Q ss_pred HHHHHHHHHHHHhCCCCch
Q 007808 117 REGEELHCLVLKNGFRANI 135 (589)
Q Consensus 117 ~~a~~~~~~~~~~~~~~~~ 135 (589)
....++.+.+++.|..++.
T Consensus 91 ~~~~~iv~~Ll~~Gadin~ 109 (186)
T 3t8k_A 91 TGTTELCKIFLEKGADITA 109 (186)
T ss_dssp HHHHHHHHHHHHTTCCSSS
T ss_pred hhHHHHHHHHHHCCCCCCc
Confidence 4556778888888876654
No 348
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=20.12 E-value=2.5e+02 Score=21.95 Aligned_cols=13 Identities=8% Similarity=0.212 Sum_probs=5.4
Q ss_pred hHHHHHHHHHHHH
Q 007808 377 GAGALSLFHEMKN 389 (589)
Q Consensus 377 ~~~A~~~~~~m~~ 389 (589)
+-.|.++++.+.+
T Consensus 42 ~~sa~ei~~~l~~ 54 (150)
T 2xig_A 42 HLSPEEITHSIRQ 54 (150)
T ss_dssp CBCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHH
Confidence 3334444444443
Done!