Query 007811
Match_columns 589
No_of_seqs 323 out of 1930
Neff 6.1
Searched_HMMs 46136
Date Thu Mar 28 15:39:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007811.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/007811hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0681 Actin-related protein 100.0 1.1E-99 2E-104 804.4 34.9 502 1-589 135-644 (645)
2 KOG0676 Actin and related prot 100.0 4.5E-62 9.7E-67 513.5 13.1 255 1-585 118-372 (372)
3 PTZ00452 actin; Provisional 100.0 1.9E-61 4.1E-66 517.2 18.1 257 1-585 119-375 (375)
4 PTZ00466 actin-like protein; P 100.0 6E-60 1.3E-64 506.4 18.3 256 1-585 125-380 (380)
5 PTZ00281 actin; Provisional 100.0 6.4E-59 1.4E-63 497.8 16.1 257 1-585 120-376 (376)
6 PTZ00004 actin-2; Provisional 100.0 1.7E-57 3.7E-62 487.1 16.8 258 1-585 120-378 (378)
7 PTZ00280 Actin-related protein 100.0 6.9E-55 1.5E-59 472.1 19.1 263 1-585 121-410 (414)
8 KOG0677 Actin-related protein 100.0 1.6E-53 3.5E-58 419.8 15.1 255 1-583 120-386 (389)
9 PF00022 Actin: Actin; InterP 100.0 2E-52 4.2E-57 447.9 14.5 137 445-585 249-393 (393)
10 smart00268 ACTIN Actin. ACTIN 100.0 1.3E-50 2.8E-55 431.9 17.4 260 1-585 114-373 (373)
11 KOG0680 Actin-related protein 100.0 9.7E-49 2.1E-53 395.6 17.6 283 1-586 112-400 (400)
12 KOG0679 Actin-related protein 100.0 2.6E-48 5.5E-53 400.7 18.5 138 442-584 272-425 (426)
13 COG5277 Actin and related prot 100.0 3.2E-48 6.9E-53 420.6 17.8 137 445-585 278-444 (444)
14 cd00012 ACTIN Actin; An ubiqui 100.0 6.5E-48 1.4E-52 411.0 18.1 256 1-583 114-371 (371)
15 KOG0678 Actin-related protein 100.0 1.1E-39 2.3E-44 330.5 9.7 270 1-587 125-413 (415)
16 KOG0797 Actin-related protein 99.9 3.9E-22 8.5E-27 212.4 14.7 111 2-117 247-363 (618)
17 PRK13930 rod shape-determining 99.7 4.7E-18 1E-22 178.9 5.9 103 2-109 119-221 (335)
18 TIGR00904 mreB cell shape dete 99.7 2.7E-17 5.8E-22 173.6 7.1 102 2-109 117-219 (333)
19 PRK13927 rod shape-determining 99.6 7.2E-17 1.6E-21 170.1 4.8 101 2-108 115-216 (334)
20 PRK13929 rod-share determining 99.6 1.9E-16 4.2E-21 167.6 6.0 99 5-109 120-219 (335)
21 PRK13928 rod shape-determining 99.4 1.6E-13 3.5E-18 145.2 4.6 101 2-107 114-214 (336)
22 PF06723 MreB_Mbl: MreB/Mbl pr 99.0 2.9E-10 6.4E-15 120.0 6.0 97 6-107 116-212 (326)
23 COG1077 MreB Actin-like ATPase 97.4 0.00024 5.3E-09 74.3 5.4 95 8-108 126-221 (342)
24 TIGR01174 ftsA cell division p 97.2 0.0028 6.1E-08 68.2 11.6 92 5-107 166-257 (371)
25 TIGR02529 EutJ ethanolamine ut 96.4 0.0099 2.1E-07 60.5 8.0 83 6-104 84-166 (239)
26 COG0849 ftsA Cell division ATP 96.0 0.017 3.7E-07 63.4 7.8 93 5-108 173-265 (418)
27 PRK15080 ethanolamine utilizat 96.0 0.022 4.8E-07 58.9 8.0 82 6-103 111-192 (267)
28 PRK09472 ftsA cell division pr 95.9 0.021 4.4E-07 62.9 7.8 92 5-107 174-265 (420)
29 PRK13917 plasmid segregation p 94.9 0.046 9.9E-07 58.7 6.3 91 9-101 151-249 (344)
30 TIGR01175 pilM type IV pilus a 94.4 0.19 4.2E-06 53.3 9.4 60 36-106 189-248 (348)
31 TIGR02529 EutJ ethanolamine ut 93.5 0.039 8.5E-07 56.1 1.9 43 505-555 196-238 (239)
32 PRK15080 ethanolamine utilizat 93.4 0.036 7.8E-07 57.3 1.6 46 504-557 222-267 (267)
33 KOG0681 Actin-related protein 93.3 0.81 1.7E-05 51.4 11.7 67 352-429 427-497 (645)
34 TIGR03739 PRTRC_D PRTRC system 93.3 0.066 1.4E-06 56.7 3.4 76 9-84 137-216 (320)
35 PRK01433 hscA chaperone protei 90.0 0.72 1.6E-05 53.2 7.2 78 7-84 165-245 (595)
36 PRK09472 ftsA cell division pr 89.1 0.16 3.4E-06 56.0 1.0 51 502-558 327-387 (420)
37 CHL00094 dnaK heat shock prote 88.5 0.21 4.5E-06 57.8 1.5 50 502-559 327-376 (621)
38 TIGR01991 HscA Fe-S protein as 88.1 0.24 5.2E-06 57.1 1.7 90 449-559 271-360 (599)
39 PTZ00400 DnaK-type molecular c 88.0 0.82 1.8E-05 53.4 5.9 76 8-83 199-277 (663)
40 CHL00094 dnaK heat shock prote 87.2 0.87 1.9E-05 52.8 5.5 75 8-82 160-237 (621)
41 TIGR02350 prok_dnaK chaperone 87.1 0.3 6.5E-06 56.1 1.7 86 453-559 287-372 (595)
42 TIGR02259 benz_CoA_red_A benzo 86.4 0.49 1.1E-05 51.7 2.7 52 503-557 381-432 (432)
43 TIGR01991 HscA Fe-S protein as 86.4 1.9 4E-05 49.9 7.6 77 7-83 153-232 (599)
44 TIGR03286 methan_mark_15 putat 86.4 0.38 8.3E-06 52.6 1.9 68 479-558 335-402 (404)
45 PRK00290 dnaK molecular chaper 86.0 0.35 7.6E-06 56.0 1.5 86 453-559 289-374 (627)
46 PF11104 PilM_2: Type IV pilus 85.9 1.4 3.1E-05 46.9 6.0 57 36-103 181-237 (340)
47 PRK05183 hscA chaperone protei 85.9 2.1 4.6E-05 49.6 7.8 78 7-84 173-253 (616)
48 TIGR02350 prok_dnaK chaperone 85.7 1.2 2.6E-05 51.2 5.7 75 8-82 155-233 (595)
49 PF06406 StbA: StbA protein; 85.7 0.7 1.5E-05 49.0 3.5 75 8-82 137-212 (318)
50 PRK00290 dnaK molecular chaper 85.6 1.2 2.5E-05 51.8 5.5 76 7-82 157-235 (627)
51 TIGR02261 benz_CoA_red_D benzo 85.4 0.5 1.1E-05 49.0 2.1 50 505-557 213-262 (262)
52 PTZ00400 DnaK-type molecular c 85.0 0.61 1.3E-05 54.5 2.8 86 453-559 330-415 (663)
53 COG4820 EutJ Ethanolamine util 84.5 0.71 1.5E-05 46.0 2.6 61 6-73 116-176 (277)
54 PLN03184 chloroplast Hsp70; Pr 84.1 1.4 3.1E-05 51.5 5.4 75 8-82 197-274 (673)
55 PRK13411 molecular chaperone D 83.9 0.48 1E-05 55.2 1.4 87 453-559 290-376 (653)
56 TIGR01174 ftsA cell division p 83.6 0.39 8.5E-06 51.7 0.5 24 505-528 315-339 (371)
57 PRK13410 molecular chaperone D 83.4 1.7 3.8E-05 50.8 5.6 75 8-82 160-237 (668)
58 TIGR03192 benz_CoA_bzdQ benzoy 82.9 0.58 1.3E-05 49.2 1.4 67 479-558 220-287 (293)
59 PTZ00186 heat shock 70 kDa pre 82.8 0.56 1.2E-05 54.8 1.3 50 502-559 352-401 (657)
60 COG4972 PilM Tfp pilus assembl 81.8 2.1 4.6E-05 45.6 5.0 67 37-115 195-261 (354)
61 PTZ00186 heat shock 70 kDa pre 81.6 2.8 6.1E-05 49.0 6.5 75 8-82 185-262 (657)
62 KOG1029 Endocytic adaptor prot 80.5 11 0.00025 44.1 10.4 41 387-429 429-469 (1118)
63 PRK05183 hscA chaperone protei 80.2 0.77 1.7E-05 53.2 1.2 48 504-559 329-376 (616)
64 PRK01433 hscA chaperone protei 80.0 0.98 2.1E-05 52.1 2.0 83 454-559 274-356 (595)
65 PRK13410 molecular chaperone D 79.6 0.88 1.9E-05 53.2 1.5 66 481-559 311-376 (668)
66 PRK10719 eutA reactivating fac 79.1 1.3 2.8E-05 49.4 2.4 55 18-74 126-183 (475)
67 COG0443 DnaK Molecular chapero 78.8 3.5 7.6E-05 47.5 6.0 77 6-82 143-222 (579)
68 TIGR00241 CoA_E_activ CoA-subs 77.6 1.6 3.4E-05 44.5 2.5 43 506-556 206-248 (248)
69 PRK11678 putative chaperone; P 77.2 4 8.7E-05 45.6 5.7 70 6-77 180-260 (450)
70 PLN03184 chloroplast Hsp70; Pr 76.8 1.4 3E-05 51.7 1.9 48 504-559 366-413 (673)
71 PF00012 HSP70: Hsp70 protein; 76.2 2.8 6.2E-05 47.8 4.3 76 7-82 159-238 (602)
72 PTZ00009 heat shock 70 kDa pro 76.0 4.8 0.0001 47.0 6.1 76 7-82 164-244 (653)
73 PTZ00009 heat shock 70 kDa pro 74.0 1.7 3.8E-05 50.6 1.8 87 452-559 294-381 (653)
74 PRK13411 molecular chaperone D 73.9 4.6 0.0001 47.2 5.3 74 9-82 159-236 (653)
75 PF00012 HSP70: Hsp70 protein; 73.8 1.5 3.1E-05 50.1 1.1 85 453-558 291-375 (602)
76 COG1924 Activator of 2-hydroxy 72.7 1.9 4.2E-05 46.7 1.6 44 507-558 346-389 (396)
77 PF02541 Ppx-GppA: Ppx/GppA ph 72.2 2.7 5.9E-05 43.6 2.6 41 34-76 111-151 (285)
78 COG0849 ftsA Cell division ATP 68.8 2.6 5.6E-05 46.6 1.6 59 501-559 318-380 (418)
79 PTZ00121 MAEBL; Provisional 67.7 3E+02 0.0066 35.4 18.2 38 269-306 1223-1260(2084)
80 PRK13317 pantothenate kinase; 65.9 5.9 0.00013 41.4 3.5 73 479-558 200-273 (277)
81 PTZ00121 MAEBL; Provisional 64.4 4E+02 0.0087 34.4 18.3 17 159-175 1137-1153(2084)
82 PF11104 PilM_2: Type IV pilus 64.0 4.5 9.7E-05 43.1 2.3 26 503-528 274-299 (340)
83 PF11239 DUF3040: Protein of u 60.9 5.2 0.00011 34.0 1.7 25 406-430 4-28 (82)
84 KOG0742 AAA+-type ATPase [Post 58.6 2.6E+02 0.0056 31.4 14.2 64 262-325 196-267 (630)
85 PF01968 Hydantoinase_A: Hydan 58.3 8.9 0.00019 40.2 3.2 40 34-73 76-131 (290)
86 KOG2072 Translation initiation 57.9 4E+02 0.0086 32.3 16.3 13 214-226 681-693 (988)
87 PRK11678 putative chaperone; P 57.1 4.4 9.6E-05 45.2 0.8 46 505-558 401-446 (450)
88 PF01869 BcrAD_BadFG: BadF/Bad 57.0 1.7 3.6E-05 44.6 -2.4 48 507-557 224-271 (271)
89 COG1548 Predicted transcriptio 56.6 7.7 0.00017 40.2 2.3 23 34-56 129-151 (330)
90 KOG4364 Chromatin assembly fac 55.0 1.4E+02 0.003 35.0 11.8 18 502-519 656-673 (811)
91 PF14450 FtsA: Cell division p 54.6 21 0.00045 32.2 4.6 60 38-108 2-72 (120)
92 KOG1029 Endocytic adaptor prot 54.0 3.1E+02 0.0068 32.9 14.5 7 466-472 709-715 (1118)
93 KOG2891 Surface glycoprotein [ 51.8 2E+02 0.0043 30.3 11.4 20 280-299 388-407 (445)
94 KOG4364 Chromatin assembly fac 51.4 3.5E+02 0.0075 31.9 14.2 17 39-55 122-138 (811)
95 TIGR01175 pilM type IV pilus a 50.7 11 0.00023 40.1 2.4 25 504-528 283-307 (348)
96 PRK11031 guanosine pentaphosph 47.2 15 0.00032 41.6 3.0 41 35-77 132-172 (496)
97 KOG2689 Predicted ubiquitin re 44.5 1.7E+02 0.0038 30.7 9.8 56 282-337 97-153 (290)
98 TIGR03706 exo_poly_only exopol 44.4 21 0.00045 37.5 3.4 41 35-77 125-165 (300)
99 COG4820 EutJ Ethanolamine util 44.3 19 0.0004 36.3 2.7 43 504-554 227-269 (277)
100 PF14048 MBD_C: C-terminal dom 43.6 32 0.0007 30.4 3.9 24 143-166 72-95 (96)
101 TIGR03123 one_C_unchar_1 proba 42.8 20 0.00044 38.3 3.0 27 34-60 127-153 (318)
102 PF07946 DUF1682: Protein of u 41.8 86 0.0019 33.4 7.6 9 20-28 67-75 (321)
103 PRK13917 plasmid segregation p 41.2 11 0.00023 40.6 0.6 44 504-558 292-335 (344)
104 COG0248 GppA Exopolyphosphatas 40.5 17 0.00036 41.3 2.0 41 34-76 128-168 (492)
105 PF09726 Macoilin: Transmembra 39.7 7.3E+02 0.016 29.6 17.3 17 358-374 611-627 (697)
106 PF08841 DDR: Diol dehydratase 39.2 88 0.0019 33.2 6.8 95 2-106 101-196 (332)
107 PRK10854 exopolyphosphatase; P 33.0 37 0.0008 38.6 3.3 40 35-76 137-176 (513)
108 PF06277 EutA: Ethanolamine ut 30.8 34 0.00073 38.5 2.4 51 19-71 124-177 (473)
109 KOG1144 Translation initiation 29.5 1.9E+02 0.0041 34.7 8.0 15 508-522 545-559 (1064)
110 TIGR00570 cdk7 CDK-activating 28.7 1.7E+02 0.0037 31.3 7.0 17 206-222 86-102 (309)
111 KOG4403 Cell surface glycoprot 28.1 5.4E+02 0.012 28.9 10.7 116 156-289 237-377 (575)
112 KOG2412 Nuclear-export-signal 27.5 8.9E+02 0.019 28.0 12.5 32 508-539 412-443 (591)
113 TIGR03739 PRTRC_D PRTRC system 27.3 36 0.00079 36.0 1.9 45 504-557 274-318 (320)
114 KOG3654 Uncharacterized CH dom 26.7 3E+02 0.0064 31.4 8.6 73 258-336 381-457 (708)
115 KOG4571 Activating transcripti 26.1 2E+02 0.0044 30.4 6.9 26 265-291 227-252 (294)
116 PF10147 CR6_interact: Growth 25.7 6.3E+02 0.014 25.7 10.1 66 262-327 83-149 (217)
117 PF05644 Miff: Mitochondrial a 25.1 21 0.00046 36.8 -0.4 12 505-516 55-66 (246)
118 KOG1144 Translation initiation 23.8 1.7E+02 0.0037 35.0 6.4 14 379-392 383-396 (1064)
119 PRK05082 N-acetylmannosamine k 21.9 89 0.0019 32.2 3.5 52 505-557 235-286 (291)
120 PF12268 DUF3612: Protein of u 21.6 1.4E+02 0.003 28.6 4.2 76 454-532 65-145 (178)
121 KOG0683 Glutamine synthetase [ 20.5 4.3E+02 0.0094 28.9 8.2 76 496-582 184-279 (380)
122 KOG0100 Molecular chaperones G 20.3 78 0.0017 35.1 2.7 30 496-525 355-384 (663)
No 1
>KOG0681 consensus Actin-related protein - Arp5p [Cytoskeleton]
Probab=100.00 E-value=1.1e-99 Score=804.43 Aligned_cols=502 Identities=41% Similarity=0.667 Sum_probs=440.7
Q ss_pred ChhhhhhhcCCCeEeeehhHHHhhhhhccCCCCCCcceeeeCCCcceEEEeecCCccccccceecccccchhHHHHHHhh
Q 007811 1 MAELLFETYGVPSVAFGVDAAFSYKYNQQYGICNKDGLAICPGFSTTHVIPFVEGEPVYRGSCRTNIGGYHITDYLKQLL 80 (589)
Q Consensus 1 m~EiLFE~f~vPsv~~~~qsvLSlya~g~~~~~~~tGLVVD~G~~~T~VvPV~eG~~l~~a~~rl~~GG~~lt~~L~~lL 80 (589)
|+|+||||||||+|.+++++++|+|.+-...+ ..+|+||++|+++|||+||.+|.++...++|+||||+++++||.+|+
T Consensus 135 m~elLFE~YgvP~V~yGIDslfS~~hN~~~~~-~~~~liis~g~~~T~vipvldG~~il~~~kRiN~GG~qa~dYL~~Lm 213 (645)
T KOG0681|consen 135 MVELLFETYGVPKVAYGIDSLFSFYHNYGKSS-NKSGLIISMGHSATHVIPVLDGRLILKDVKRINWGGYQAGDYLSRLM 213 (645)
T ss_pred HHHHHHHHcCCcceeechhhHHHHhhccCccc-CcceEEEecCCCcceeEEEecCchhhhcceeeccCcchHHHHHHHHH
Confidence 78999999999999999999999997542222 34899999999999999999999999999999999999999999999
Q ss_pred hccCCCCCCCCCHHHHHHHHhcccccccChHHHHHHHhcCcccccccceeeeCCCCCCCCCCCCCHHHHHHHHHHHHHHh
Q 007811 81 SLKHPQHMTKLTWEKVEDLKMEHCYIAPDYFSEAQLFQKGTKEAEHKTRCWQLPWVPPPTEEPPSEEEIARKAAIKERQG 160 (589)
Q Consensus 81 ~~k~~~~~~~~~~~~v~~IKE~~CyVa~Dy~~El~~~~~~~~~~~~~~~~~qlP~~~~~~~~~~t~eel~~~~~rr~~~~ 160 (589)
+.+||.|++.+++..++.+++.|||||.||..|+..+.. ++++++++.++||||++.+. +.||+++|++|++
T Consensus 214 q~Kyp~~~~~~t~sk~E~l~~eHcyis~DY~eei~~~l~-~d~~d~~~~~~qlP~~evl~-----~~e~~l~Ae~kqe-- 285 (645)
T KOG0681|consen 214 QLKYPFHLNAFTGSKAERLLHEHCYISPDYREEIIKILE-MDYYDENRNYFQLPYTEVLA-----EVELALTAEKKQE-- 285 (645)
T ss_pred hccCccchhhcCHHHHHHHhhhhceeCcchHHHHHHHhh-hhhhhccceEEecccccccc-----hhhhhccHHHHHH--
Confidence 999999999999999999999999999999999999998 99999999999999997542 2259999999999
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhhcHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHHhhhcchhhhhhh
Q 007811 161 QRLREMAEAKRSSRINELENQIHGLEFLLQQLEQVEENDIAAFLSDTGYVSRQEIESTLVKLTQSLRKAKGERKVEQAEL 240 (589)
Q Consensus 161 ~RLqe~~~~~r~ekl~~~e~~l~~~~~l~~~~~~~~~~~~~~~L~~~g~~~~~~l~~~i~~l~~~~~~~~~~~~~~~~e~ 240 (589)
+|||++++-+|.+|+.++|+.= .|+++|+++ . |++. ++ ++
T Consensus 286 kRlq~~a~lkrv~k~~~re~~r---------------------------edeqql~~~-~-------kaq~----e~-e~ 325 (645)
T KOG0681|consen 286 KRLQEQAALKRVEKINARENRR---------------------------EDEQQLESY-N-------KAQG----EQ-ES 325 (645)
T ss_pred HHHHHHHHHhhHHHHHHHHhhh---------------------------hhHHHHHHH-H-------Hhhh----ch-hc
Confidence 9999999999999999887721 345556555 2 2221 11 11
Q ss_pred hhhhcccCCCCCCccCCCccCCHHHHHHHHHhhhhccChHHHHHHHHHHHHHHHHHHHHhHHHHHHhhcChHHHHHHHHH
Q 007811 241 EKTDASMNEKYPLIHIPDNMLSLEQLKEKRRQIFLKTTTEGRQRAKQKRVEEELEQEKKNQEEEERRLENPELYVEQMRA 320 (589)
Q Consensus 241 ~~~~~~~~~~~~Ll~~pd~~l~~~~~keKr~q~~lk~~~~ar~~~k~~~~~ek~~~~~~~~~~e~~~~~~~~~~~~~~r~ 320 (589)
.. ..+.+|||++|| ++|+++|||+||+|+|||++++||+|+|.+|++ |++.+++++|.+|+.+|++++|.
T Consensus 326 ~~---D~~q~~~ll~v~-~eL~~d~lk~k~~qr~lkas~dar~rar~eke~------Er~~k~~~~r~~~~~swl~e~r~ 395 (645)
T KOG0681|consen 326 NL---DLEQKFPLLNVP-AELDEDQLKEKKKQRILKASTDARLRARVEKEL------ERLNKLEEEREENLISWLEELRE 395 (645)
T ss_pred Cc---cHhhhchhhcch-hhhCHHHHHHHHHHHHHHhhhhhhccccccchH------HHhhcccccccccHHHHHHHHHH
Confidence 11 123589999999 999999999999999999999999999999944 44466777888999999999999
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCcccccHHHHHHHHHhhhhhhc---c----CCCCCCCCCCchhhHHHH
Q 007811 321 KYKELSEKIDQRKRLKTNGNHTNGNNTSGGVGRGERLNAAQRERMRLLTTAAFD---R----GKGEDTFGAKDEDWQLYK 393 (589)
Q Consensus 321 ~~~~i~~~~~~r~~~~~~l~~~~~~~~~~~~~~~~r~s~a~~~rm~~i~~~~~~---~----~~~~d~fg~~d~dw~vy~ 393 (589)
+++.|++++++++++++++ ++|+|+++|.|||.|+.||.+ + +-.+|+|||+|+||+||.
T Consensus 396 k~~~ller~~~kk~lk~e~--------------~~r~s~~Sq~rmr~~~~La~~~~~rrk~~~~t~D~fg~~Dedw~vYe 461 (645)
T KOG0681|consen 396 KLEKLLERISQKKRLKQEL--------------KDRKSHASQLRMRALARLAYEQVVRRKRKEATPDNFGARDEDWDVYE 461 (645)
T ss_pred HHHHHHHHHHHHHHHHHhh--------------hhhhhhhhHhhhHHHHhhhHHHHHHHhcccCCccccccchhhHHHHH
Confidence 9999999999999999999 899999999999999999976 1 235888999999999996
Q ss_pred HhhcCCCCCchhhhHHHHHHHHHHHhhhhcCCCCCCCCCC-CCCCccCCCCccccCCCCCeEEEeCceeccccccCcCCC
Q 007811 394 LMSRDNDDDDEEMDENEAELARISARLQEVDPTFVPKQES-GPTQSAAEIPRVRPLTKEDFQIVLGVERFRCPEILFRPN 472 (589)
Q Consensus 394 ~i~~~~~~~~~d~e~~~~~l~~le~~L~~~Dp~F~~~~~~-~~~~~~~~~~~~y~lp~~~~~I~lg~ERf~~pE~LF~Ps 472 (589)
++. +..+.+...|..|+++|+++||+|++.... .+. . -...+-+..+++++++|.||++|||++|+|+
T Consensus 462 ~le-------e~~~~~~~dl~~l~~~L~e~Dp~F~~~~~~~~d~--~--~~~~p~~~~e~~qlh~nVEriRvPEIiFqPs 530 (645)
T KOG0681|consen 462 DLE-------EENKSILEDLKSLNHELLEFDPHFTQYVEGTTDP--R--NGVLPGFTAEDYQLHLNVERIRVPEIIFQPS 530 (645)
T ss_pred Hhh-------hhhhhHHHHHHHHHHHHHhhCcccccccccccCc--c--cCcchhHHHhhhhhhhcceeeccceeeeccc
Confidence 663 334456678999999999999999997411 111 0 0111223577799999999999999999999
Q ss_pred CCCCCCCCcchhHHHHhhcCCCCChhhhHhhcCCeEEecCCCCCCChHHHHHHHHHhhcCCCCCeEEEeCCCCccceeec
Q 007811 473 WVGIDQVGLDEMTGVSIRRLPTKDEDLEQRLTSSILMTGGCCLFPGMSERLEAGIRMIRPCGAPIKVVRALDPVLDAWRG 552 (589)
Q Consensus 473 l~g~~~~GL~e~I~~sI~~~~~c~~d~r~~L~~NIvLtGG~S~~~Gf~eRL~~EL~~l~p~~~~v~V~~~~d~~~~aW~G 552 (589)
++|.|++||.|++..++.++ |.+.+..|.+||+||||+|++||+.+||.+||..+.|.+++|+|+.+.||..+||.|
T Consensus 531 iiG~dQaGl~Ei~~~il~r~---p~~eq~~lV~nVllTGG~s~~pGmkeRi~kElt~mrP~gS~i~V~rasdP~LDAW~G 607 (645)
T KOG0681|consen 531 IIGIDQAGLAEIMDTILRRY---PHDEQEKLVSNVLLTGGCSQLPGMKERIKKELTSMRPVGSSINVVRASDPVLDAWRG 607 (645)
T ss_pred cccchhhhHHHHHHHHHHhC---chhhhHhhhhheEeecccccCcCHHHHHHHHhheecccCCceEEEecCCcchhhhhh
Confidence 99999999999999999866 999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhcccCCCCccceeHHHHhhhchHHHHHhhcccCC
Q 007811 553 ASVYATKLQFPQQTFSRMDYYEKGENWLRRYQLQYTL 589 (589)
Q Consensus 553 gsilasl~~f~~~wITk~EY~E~G~~iv~~k~~~~~~ 589 (589)
|+.+|...+|...||||+||+|+|+++++.|+.||+.
T Consensus 608 A~~~a~n~~f~~~~~Tr~dy~E~G~e~~kEh~~~n~~ 644 (645)
T KOG0681|consen 608 ASAWAANPTFTLTQITRKDYEEKGEEYLKEHVASNIY 644 (645)
T ss_pred hHHhhcCcccchhhhhHHhhhhhhHHHHHHHhhcccc
Confidence 9999999999999999999999999999999999863
No 2
>KOG0676 consensus Actin and related proteins [Cytoskeleton]
Probab=100.00 E-value=4.5e-62 Score=513.45 Aligned_cols=255 Identities=31% Similarity=0.571 Sum_probs=236.8
Q ss_pred ChhhhhhhcCCCeEeeehhHHHhhhhhccCCCCCCcceeeeCCCcceEEEeecCCccccccceecccccchhHHHHHHhh
Q 007811 1 MAELLFETYGVPSVAFGVDAAFSYKYNQQYGICNKDGLAICPGFSTTHVIPFVEGEPVYRGSCRTNIGGYHITDYLKQLL 80 (589)
Q Consensus 1 m~EiLFE~f~vPsv~~~~qsvLSlya~g~~~~~~~tGLVVD~G~~~T~VvPV~eG~~l~~a~~rl~~GG~~lt~~L~~lL 80 (589)
|+|+|||+||||++|++.|++| ||+| ++||+|||+|+++||+||||+|+++++++.++++||+++|+||..+|
T Consensus 118 ~tqi~FE~fnvpa~yva~qavl--ya~g-----~ttG~VvD~G~gvt~~vPI~eG~~lp~ai~~ldl~G~dlt~~l~~~L 190 (372)
T KOG0676|consen 118 LTQIMFETFNVPALYVAIQAVL--YASG-----RTTGLVVDSGDGVTHVVPIYEGYALPHAILRLDLAGRDLTDYLLKQL 190 (372)
T ss_pred HHHHhhhhcCccHhHHHHHHHH--HHcC-----CeeEEEEEcCCCceeeeecccccccchhhheecccchhhHHHHHHHH
Confidence 6899999999999999999888 9999 99999999999999999999999999999999999999999999999
Q ss_pred hccCCCCCCCCCHHHHHHHHhcccccccChHHHHHHHhcCcccccccceeeeCCCCCCCCCCCCCHHHHHHHHHHHHHHh
Q 007811 81 SLKHPQHMTKLTWEKVEDLKMEHCYIAPDYFSEAQLFQKGTKEAEHKTRCWQLPWVPPPTEEPPSEEEIARKAAIKERQG 160 (589)
Q Consensus 81 ~~k~~~~~~~~~~~~v~~IKE~~CyVa~Dy~~El~~~~~~~~~~~~~~~~~qlP~~~~~~~~~~t~eel~~~~~rr~~~~ 160 (589)
.+++++|.+....+++++|||++|||++||.+|+.. ... ++
T Consensus 191 ~~~g~s~~~~~~~eIv~diKeklCyvald~~~e~~~-~~~------------------------~~-------------- 231 (372)
T KOG0676|consen 191 RKRGYSFTTSAEFEIVRDIKEKLCYVALDFEEEEET-ANT------------------------SS-------------- 231 (372)
T ss_pred HhcccccccccHHHHHHHhHhhhcccccccchhhhc-ccc------------------------cc--------------
Confidence 999999999999999999999999999999888654 210 00
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhhcHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHHhhhcchhhhhhh
Q 007811 161 QRLREMAEAKRSSRINELENQIHGLEFLLQQLEQVEENDIAAFLSDTGYVSRQEIESTLVKLTQSLRKAKGERKVEQAEL 240 (589)
Q Consensus 161 ~RLqe~~~~~r~ekl~~~e~~l~~~~~l~~~~~~~~~~~~~~~L~~~g~~~~~~l~~~i~~l~~~~~~~~~~~~~~~~e~ 240 (589)
T Consensus 232 -------------------------------------------------------------------------------- 231 (372)
T KOG0676|consen 232 -------------------------------------------------------------------------------- 231 (372)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhhhcccCCCCCCccCCCccCCHHHHHHHHHhhhhccChHHHHHHHHHHHHHHHHHHHHhHHHHHHhhcChHHHHHHHHH
Q 007811 241 EKTDASMNEKYPLIHIPDNMLSLEQLKEKRRQIFLKTTTEGRQRAKQKRVEEELEQEKKNQEEEERRLENPELYVEQMRA 320 (589)
Q Consensus 241 ~~~~~~~~~~~~Ll~~pd~~l~~~~~keKr~q~~lk~~~~ar~~~k~~~~~ek~~~~~~~~~~e~~~~~~~~~~~~~~r~ 320 (589)
T Consensus 232 -------------------------------------------------------------------------------- 231 (372)
T KOG0676|consen 232 -------------------------------------------------------------------------------- 231 (372)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCcccccHHHHHHHHHhhhhhhccCCCCCCCCCCchhhHHHHHhhcCCC
Q 007811 321 KYKELSEKIDQRKRLKTNGNHTNGNNTSGGVGRGERLNAAQRERMRLLTTAAFDRGKGEDTFGAKDEDWQLYKLMSRDND 400 (589)
Q Consensus 321 ~~~~i~~~~~~r~~~~~~l~~~~~~~~~~~~~~~~r~s~a~~~rm~~i~~~~~~~~~~~d~fg~~d~dw~vy~~i~~~~~ 400 (589)
T Consensus 232 -------------------------------------------------------------------------------- 231 (372)
T KOG0676|consen 232 -------------------------------------------------------------------------------- 231 (372)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCchhhhHHHHHHHHHHHhhhhcCCCCCCCCCCCCCCccCCCCccccCCCCCeEEEeCceeccccccCcCCCCCCCCCCC
Q 007811 401 DDDEEMDENEAELARISARLQEVDPTFVPKQESGPTQSAAEIPRVRPLTKEDFQIVLGVERFRCPEILFRPNWVGIDQVG 480 (589)
Q Consensus 401 ~~~~d~e~~~~~l~~le~~L~~~Dp~F~~~~~~~~~~~~~~~~~~y~lp~~~~~I~lg~ERf~~pE~LF~Psl~g~~~~G 480 (589)
.+...|+|||+ +.|+++.|||+|||+||+|+++|.+..|
T Consensus 232 ----------------------------------------~l~~~y~lPDg-~~i~i~~erf~~pE~lFqP~~~g~e~~g 270 (372)
T KOG0676|consen 232 ----------------------------------------SLESSYELPDG-QKITIGNERFRCPEVLFQPSLLGMESPG 270 (372)
T ss_pred ----------------------------------------cccccccCCCC-CEEecCCcccccchhcCChhhcCCCCCc
Confidence 00112556777 6699999999999999999999999999
Q ss_pred cchhHHHHhhcCCCCChhhhHhhcCCeEEecCCCCCCChHHHHHHHHHhhcCCCCCeEEEeCCCCccceeechhhhcccC
Q 007811 481 LDEMTGVSIRRLPTKDEDLEQRLTSSILMTGGCCLFPGMSERLEAGIRMIRPCGAPIKVVRALDPVLDAWRGASVYATKL 560 (589)
Q Consensus 481 L~e~I~~sI~~~~~c~~d~r~~L~~NIvLtGG~S~~~Gf~eRL~~EL~~l~p~~~~v~V~~~~d~~~~aW~Ggsilasl~ 560 (589)
||+++.+||. +||+|+|+.||.||||+||+|++|||.+||++||..+.|..++++|+++|++.|++|+||||+||++
T Consensus 271 i~~~~~~sI~---kcd~dlrk~L~~nivLsGGtT~~pGl~~Rl~kEl~~l~P~~~~ikv~~pp~r~~s~WlGgSIlasls 347 (372)
T KOG0676|consen 271 IHELTVNSIM---KCDIDLRKDLYENIVLSGGTTMFPGLADRLQKELQALAPSTIKIKVIAPPERKYSAWLGGSILASLS 347 (372)
T ss_pred hhHHHHHHHH---hCChhHhHHHHhheEEeCCcccchhHHHHHHHHHhhcCCCCcceEEecCcccccceecCceeEeecc
Confidence 9999999995 6799999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCccceeHHHHhhhchHHHHHhhc
Q 007811 561 QFPQQTFSRMDYYEKGENWLRRYQL 585 (589)
Q Consensus 561 ~f~~~wITk~EY~E~G~~iv~~k~~ 585 (589)
+|+++||||+||+|+|+.++|++||
T Consensus 348 tfq~~witk~eY~e~g~~~~~rk~f 372 (372)
T KOG0676|consen 348 TFQQMWITKEEYEEHGPSIIHRKCF 372 (372)
T ss_pred hHhhccccHHHHhhhCCceeeeccC
Confidence 9999999999999999999999998
No 3
>PTZ00452 actin; Provisional
Probab=100.00 E-value=1.9e-61 Score=517.20 Aligned_cols=257 Identities=28% Similarity=0.483 Sum_probs=236.9
Q ss_pred ChhhhhhhcCCCeEeeehhHHHhhhhhccCCCCCCcceeeeCCCcceEEEeecCCccccccceecccccchhHHHHHHhh
Q 007811 1 MAELLFETYGVPSVAFGVDAAFSYKYNQQYGICNKDGLAICPGFSTTHVIPFVEGEPVYRGSCRTNIGGYHITDYLKQLL 80 (589)
Q Consensus 1 m~EiLFE~f~vPsv~~~~qsvLSlya~g~~~~~~~tGLVVD~G~~~T~VvPV~eG~~l~~a~~rl~~GG~~lt~~L~~lL 80 (589)
|+|+|||+|+||+++++++++||+||+| ++||||||+|++.|+|+||++|+++++++.|+++||.++|+||.++|
T Consensus 119 l~eilFE~~~vp~~~~~~~~~lslya~g-----~~tglVVDiG~~~t~v~PV~dG~~l~~~~~r~~~gG~~lt~~L~~lL 193 (375)
T PTZ00452 119 MTQIMFETFNTPCLYISNEAVLSLYTSG-----KTIGLVVDSGEGVTHCVPVFEGHQIPQAITKINLAGRLCTDYLTQIL 193 (375)
T ss_pred HHHHHhhccCCceEEEechHHHHHHHCC-----CceeeeecCCCCcceEEEEECCEEeccceEEeeccchHHHHHHHHHH
Confidence 6899999999999999999999999999 89999999999999999999999999999999999999999999999
Q ss_pred hccCCCCCCCCCHHHHHHHHhcccccccChHHHHHHHhcCcccccccceeeeCCCCCCCCCCCCCHHHHHHHHHHHHHHh
Q 007811 81 SLKHPQHMTKLTWEKVEDLKMEHCYIAPDYFSEAQLFQKGTKEAEHKTRCWQLPWVPPPTEEPPSEEEIARKAAIKERQG 160 (589)
Q Consensus 81 ~~k~~~~~~~~~~~~v~~IKE~~CyVa~Dy~~El~~~~~~~~~~~~~~~~~qlP~~~~~~~~~~t~eel~~~~~rr~~~~ 160 (589)
..+++.+.+..+..++++|||++|||+.||.+++..+..
T Consensus 194 ~~~~~~~~~~~~~~~~~~iKe~~c~v~~d~~~e~~~~~~----------------------------------------- 232 (375)
T PTZ00452 194 QELGYSLTEPHQRIIVKNIKERLCYTALDPQDEKRIYKE----------------------------------------- 232 (375)
T ss_pred HhcCCCCCCHHHHHHHHHHHHHhccccCcHHHHHHHhhc-----------------------------------------
Confidence 999888876667889999999999999988665432110
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhhcHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHHhhhcchhhhhhh
Q 007811 161 QRLREMAEAKRSSRINELENQIHGLEFLLQQLEQVEENDIAAFLSDTGYVSRQEIESTLVKLTQSLRKAKGERKVEQAEL 240 (589)
Q Consensus 161 ~RLqe~~~~~r~ekl~~~e~~l~~~~~l~~~~~~~~~~~~~~~L~~~g~~~~~~l~~~i~~l~~~~~~~~~~~~~~~~e~ 240 (589)
T Consensus 233 -------------------------------------------------------------------------------- 232 (375)
T PTZ00452 233 -------------------------------------------------------------------------------- 232 (375)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhhhcccCCCCCCccCCCccCCHHHHHHHHHhhhhccChHHHHHHHHHHHHHHHHHHHHhHHHHHHhhcChHHHHHHHHH
Q 007811 241 EKTDASMNEKYPLIHIPDNMLSLEQLKEKRRQIFLKTTTEGRQRAKQKRVEEELEQEKKNQEEEERRLENPELYVEQMRA 320 (589)
Q Consensus 241 ~~~~~~~~~~~~Ll~~pd~~l~~~~~keKr~q~~lk~~~~ar~~~k~~~~~ek~~~~~~~~~~e~~~~~~~~~~~~~~r~ 320 (589)
T Consensus 233 -------------------------------------------------------------------------------- 232 (375)
T PTZ00452 233 -------------------------------------------------------------------------------- 232 (375)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCcccccHHHHHHHHHhhhhhhccCCCCCCCCCCchhhHHHHHhhcCCC
Q 007811 321 KYKELSEKIDQRKRLKTNGNHTNGNNTSGGVGRGERLNAAQRERMRLLTTAAFDRGKGEDTFGAKDEDWQLYKLMSRDND 400 (589)
Q Consensus 321 ~~~~i~~~~~~r~~~~~~l~~~~~~~~~~~~~~~~r~s~a~~~rm~~i~~~~~~~~~~~d~fg~~d~dw~vy~~i~~~~~ 400 (589)
.+
T Consensus 233 ------------------~~------------------------------------------------------------ 234 (375)
T PTZ00452 233 ------------------SN------------------------------------------------------------ 234 (375)
T ss_pred ------------------cC------------------------------------------------------------
Confidence 00
Q ss_pred CCchhhhHHHHHHHHHHHhhhhcCCCCCCCCCCCCCCccCCCCccccCCCCCeEEEeCceeccccccCcCCCCCCCCCCC
Q 007811 401 DDDEEMDENEAELARISARLQEVDPTFVPKQESGPTQSAAEIPRVRPLTKEDFQIVLGVERFRCPEILFRPNWVGIDQVG 480 (589)
Q Consensus 401 ~~~~d~e~~~~~l~~le~~L~~~Dp~F~~~~~~~~~~~~~~~~~~y~lp~~~~~I~lg~ERf~~pE~LF~Psl~g~~~~G 480 (589)
.+...|+|||| +.|+|+.|||+|||+||+|+++|.+..|
T Consensus 235 ----------------------------------------~~~~~y~LPDg-~~i~l~~er~~~~E~LF~P~~~g~~~~g 273 (375)
T PTZ00452 235 ----------------------------------------SQDSPYKLPDG-NILTIKSQKFRCSEILFQPKLIGLEVAG 273 (375)
T ss_pred ----------------------------------------CcCceEECCCC-CEEEeehHHhcCcccccChhhcCCCCCC
Confidence 01134678888 8999999999999999999999999999
Q ss_pred cchhHHHHhhcCCCCChhhhHhhcCCeEEecCCCCCCChHHHHHHHHHhhcCCCCCeEEEeCCCCccceeechhhhcccC
Q 007811 481 LDEMTGVSIRRLPTKDEDLEQRLTSSILMTGGCCLFPGMSERLEAGIRMIRPCGAPIKVVRALDPVLDAWRGASVYATKL 560 (589)
Q Consensus 481 L~e~I~~sI~~~~~c~~d~r~~L~~NIvLtGG~S~~~Gf~eRL~~EL~~l~p~~~~v~V~~~~d~~~~aW~Ggsilasl~ 560 (589)
|+++|.+||. +||+|+|+.|++|||||||+|+||||.+||++||..++|...+++|.++++|.+++|+||||||+++
T Consensus 274 i~~~i~~si~---~c~~d~r~~L~~nIvL~GG~Sl~~Gf~~RL~~El~~~~p~~~~v~v~~~~~r~~~aW~GgSilasl~ 350 (375)
T PTZ00452 274 IHHLAYSSIK---KCDLDLRQELCRNIVLSGGTTLFPGIANRLSNELTNLVPSQLKIQVAAPPDRRFSAWIGGSIQCTLS 350 (375)
T ss_pred hhHHHHHHHH---hCCHhHHHHhhccEEEecccccccCHHHHHHHHHHHhCCCCceeEEecCCCcceeEEECchhhcCcc
Confidence 9999999996 6799999999999999999999999999999999999998889999999999999999999999999
Q ss_pred CCCccceeHHHHhhhchHHHHHhhc
Q 007811 561 QFPQQTFSRMDYYEKGENWLRRYQL 585 (589)
Q Consensus 561 ~f~~~wITk~EY~E~G~~iv~~k~~ 585 (589)
+|+++||||+||+|+|++++++|||
T Consensus 351 ~f~~~~vtk~eYeE~G~~i~~~k~~ 375 (375)
T PTZ00452 351 TQQPQWIKRQEYDEQGPSIVHRKCF 375 (375)
T ss_pred chhhhEeEHHHHhccCcceeeeecC
Confidence 9999999999999999999999986
No 4
>PTZ00466 actin-like protein; Provisional
Probab=100.00 E-value=6e-60 Score=506.39 Aligned_cols=256 Identities=29% Similarity=0.463 Sum_probs=235.8
Q ss_pred ChhhhhhhcCCCeEeeehhHHHhhhhhccCCCCCCcceeeeCCCcceEEEeecCCccccccceecccccchhHHHHHHhh
Q 007811 1 MAELLFETYGVPSVAFGVDAAFSYKYNQQYGICNKDGLAICPGFSTTHVIPFVEGEPVYRGSCRTNIGGYHITDYLKQLL 80 (589)
Q Consensus 1 m~EiLFE~f~vPsv~~~~qsvLSlya~g~~~~~~~tGLVVD~G~~~T~VvPV~eG~~l~~a~~rl~~GG~~lt~~L~~lL 80 (589)
|+|+|||+|+||+++++.+++||+||+| ++||||||+|++.|+|+||++|+++.+++.++++||+++|+||.++|
T Consensus 125 ~~e~lFE~~~~p~~~~~~~~~lsl~a~g-----~~tglVVD~G~~~t~v~PV~~G~~~~~~~~~~~~GG~~lt~~L~~lL 199 (380)
T PTZ00466 125 IAEVFFETFNVPALFISIQAILSLYSCG-----KTNGTVLDCGDGVCHCVSIYEGYSITNTITRTDVAGRDITTYLGYLL 199 (380)
T ss_pred HHHHHhccCCCCeEEEecchHHHHHhcC-----CceEEEEeCCCCceEEEEEECCEEeecceeEecCchhHHHHHHHHHH
Confidence 5899999999999999999999999999 89999999999999999999999999999999999999999999999
Q ss_pred hccCCCCCCCCCHHHHHHHHhcccccccChHHHHHHHhcCcccccccceeeeCCCCCCCCCCCCCHHHHHHHHHHHHHHh
Q 007811 81 SLKHPQHMTKLTWEKVEDLKMEHCYIAPDYFSEAQLFQKGTKEAEHKTRCWQLPWVPPPTEEPPSEEEIARKAAIKERQG 160 (589)
Q Consensus 81 ~~k~~~~~~~~~~~~v~~IKE~~CyVa~Dy~~El~~~~~~~~~~~~~~~~~qlP~~~~~~~~~~t~eel~~~~~rr~~~~ 160 (589)
..++..+.+..+.+++++|||++|||+.||..++.....
T Consensus 200 ~~~~~~~~~~~~~~~v~~iKe~~c~v~~d~~~e~~~~~~----------------------------------------- 238 (380)
T PTZ00466 200 RKNGHLFNTSAEMEVVKNMKENCCYVSFNMNKEKNSSEK----------------------------------------- 238 (380)
T ss_pred HhcCCCCCcHHHHHHHHHHHHhCeEecCChHHHHhhccc-----------------------------------------
Confidence 988887777778899999999999999987554321000
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhhcHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHHhhhcchhhhhhh
Q 007811 161 QRLREMAEAKRSSRINELENQIHGLEFLLQQLEQVEENDIAAFLSDTGYVSRQEIESTLVKLTQSLRKAKGERKVEQAEL 240 (589)
Q Consensus 161 ~RLqe~~~~~r~ekl~~~e~~l~~~~~l~~~~~~~~~~~~~~~L~~~g~~~~~~l~~~i~~l~~~~~~~~~~~~~~~~e~ 240 (589)
T Consensus 239 -------------------------------------------------------------------------------- 238 (380)
T PTZ00466 239 -------------------------------------------------------------------------------- 238 (380)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhhhcccCCCCCCccCCCccCCHHHHHHHHHhhhhccChHHHHHHHHHHHHHHHHHHHHhHHHHHHhhcChHHHHHHHHH
Q 007811 241 EKTDASMNEKYPLIHIPDNMLSLEQLKEKRRQIFLKTTTEGRQRAKQKRVEEELEQEKKNQEEEERRLENPELYVEQMRA 320 (589)
Q Consensus 241 ~~~~~~~~~~~~Ll~~pd~~l~~~~~keKr~q~~lk~~~~ar~~~k~~~~~ek~~~~~~~~~~e~~~~~~~~~~~~~~r~ 320 (589)
T Consensus 239 -------------------------------------------------------------------------------- 238 (380)
T PTZ00466 239 -------------------------------------------------------------------------------- 238 (380)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCcccccHHHHHHHHHhhhhhhccCCCCCCCCCCchhhHHHHHhhcCCC
Q 007811 321 KYKELSEKIDQRKRLKTNGNHTNGNNTSGGVGRGERLNAAQRERMRLLTTAAFDRGKGEDTFGAKDEDWQLYKLMSRDND 400 (589)
Q Consensus 321 ~~~~i~~~~~~r~~~~~~l~~~~~~~~~~~~~~~~r~s~a~~~rm~~i~~~~~~~~~~~d~fg~~d~dw~vy~~i~~~~~ 400 (589)
-
T Consensus 239 ------------------~------------------------------------------------------------- 239 (380)
T PTZ00466 239 ------------------A------------------------------------------------------------- 239 (380)
T ss_pred ------------------c-------------------------------------------------------------
Confidence 0
Q ss_pred CCchhhhHHHHHHHHHHHhhhhcCCCCCCCCCCCCCCccCCCCccccCCCCCeEEEeCceeccccccCcCCCCCCCCCCC
Q 007811 401 DDDEEMDENEAELARISARLQEVDPTFVPKQESGPTQSAAEIPRVRPLTKEDFQIVLGVERFRCPEILFRPNWVGIDQVG 480 (589)
Q Consensus 401 ~~~~d~e~~~~~l~~le~~L~~~Dp~F~~~~~~~~~~~~~~~~~~y~lp~~~~~I~lg~ERf~~pE~LF~Psl~g~~~~G 480 (589)
....+|+||+| ++|.|+.|||+|||+||+|+++|.+..|
T Consensus 240 ----------------------------------------~~~~~y~LPdg-~~i~l~~er~~~~E~LF~P~~~g~~~~g 278 (380)
T PTZ00466 240 ----------------------------------------LTTLPYILPDG-SQILIGSERYRAPEVLFNPSILGLEYLG 278 (380)
T ss_pred ----------------------------------------ccceeEECCCC-cEEEEchHHhcCcccccCccccCCCCCC
Confidence 00134677888 8999999999999999999999999999
Q ss_pred cchhHHHHhhcCCCCChhhhHhhcCCeEEecCCCCCCChHHHHHHHHHhhcCCCCCeEEEeCCCCccceeechhhhcccC
Q 007811 481 LDEMTGVSIRRLPTKDEDLEQRLTSSILMTGGCCLFPGMSERLEAGIRMIRPCGAPIKVVRALDPVLDAWRGASVYATKL 560 (589)
Q Consensus 481 L~e~I~~sI~~~~~c~~d~r~~L~~NIvLtGG~S~~~Gf~eRL~~EL~~l~p~~~~v~V~~~~d~~~~aW~Ggsilasl~ 560 (589)
|+++|.+||. +||+|+|+.||+|||||||+|+||||.+||++||..+.|..++++|..+++|.+++|+||||||+++
T Consensus 279 l~~~i~~sI~---~c~~d~r~~L~~nIvL~GG~Sl~~Gf~~RL~~EL~~l~p~~~~v~v~~~~~r~~~aW~GgSilasl~ 355 (380)
T PTZ00466 279 LSELIVTSIT---RADMDLRRTLYSHIVLSGGTTMFHGFGDRLLNEIRKFAPKDITIRISAPPERKFSTFIGGSILASLA 355 (380)
T ss_pred HHHHHHHHHH---hCChhhHHHHhhcEEEeCCccccCCHHHHHHHHHHHhCCCCceEEEecCCCCceeEEECchhhcCcc
Confidence 9999999996 6799999999999999999999999999999999999999889999999999999999999999999
Q ss_pred CCCccceeHHHHhhhchHHHHHhhc
Q 007811 561 QFPQQTFSRMDYYEKGENWLRRYQL 585 (589)
Q Consensus 561 ~f~~~wITk~EY~E~G~~iv~~k~~ 585 (589)
+|+++||||+||+|+|+++|++|||
T Consensus 356 ~f~~~~itk~eYeE~G~~iv~rk~~ 380 (380)
T PTZ00466 356 TFKKIWISKQEFDEYGSVILHRKTF 380 (380)
T ss_pred chhhhEeEHHHHhhhCcHhheeecC
Confidence 9999999999999999999999986
No 5
>PTZ00281 actin; Provisional
Probab=100.00 E-value=6.4e-59 Score=497.83 Aligned_cols=257 Identities=28% Similarity=0.527 Sum_probs=235.8
Q ss_pred ChhhhhhhcCCCeEeeehhHHHhhhhhccCCCCCCcceeeeCCCcceEEEeecCCccccccceecccccchhHHHHHHhh
Q 007811 1 MAELLFETYGVPSVAFGVDAAFSYKYNQQYGICNKDGLAICPGFSTTHVIPFVEGEPVYRGSCRTNIGGYHITDYLKQLL 80 (589)
Q Consensus 1 m~EiLFE~f~vPsv~~~~qsvLSlya~g~~~~~~~tGLVVD~G~~~T~VvPV~eG~~l~~a~~rl~~GG~~lt~~L~~lL 80 (589)
|+|+|||+|+||+++++++++||+|++| ++||||||+|++.|+|+||++|+++.++++++++||.++|+||.++|
T Consensus 120 l~e~lFE~~~vp~~~~~~~~~ls~ya~g-----~~tglVVDiG~~~t~v~PV~dG~~~~~~~~~~~~GG~~lt~~L~~lL 194 (376)
T PTZ00281 120 MTQIMFETFNTPAMYVAIQAVLSLYASG-----RTTGIVMDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYMMKIL 194 (376)
T ss_pred HHHHHhcccCCceeEeeccHHHHHHhcC-----CceEEEEECCCceEEEEEEEecccchhheeeccCcHHHHHHHHHHHH
Confidence 6899999999999999999999999999 89999999999999999999999999999999999999999999999
Q ss_pred hccCCCCCCCCCHHHHHHHHhcccccccChHHHHHHHhcCcccccccceeeeCCCCCCCCCCCCCHHHHHHHHHHHHHHh
Q 007811 81 SLKHPQHMTKLTWEKVEDLKMEHCYIAPDYFSEAQLFQKGTKEAEHKTRCWQLPWVPPPTEEPPSEEEIARKAAIKERQG 160 (589)
Q Consensus 81 ~~k~~~~~~~~~~~~v~~IKE~~CyVa~Dy~~El~~~~~~~~~~~~~~~~~qlP~~~~~~~~~~t~eel~~~~~rr~~~~ 160 (589)
..+++.+.+..+.+++++|||++|||+.||..+++....
T Consensus 195 ~~~~~~~~~~~~~~~~~~iKe~~c~v~~d~~~~~~~~~~----------------------------------------- 233 (376)
T PTZ00281 195 TERGYSFTTTAEREIVRDIKEKLAYVALDFEAEMQTAAS----------------------------------------- 233 (376)
T ss_pred HhcCCCCCcHHHHHHHHHHHHhcEEecCCchHHHHhhhc-----------------------------------------
Confidence 999888877778899999999999999887544321100
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhhcHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHHhhhcchhhhhhh
Q 007811 161 QRLREMAEAKRSSRINELENQIHGLEFLLQQLEQVEENDIAAFLSDTGYVSRQEIESTLVKLTQSLRKAKGERKVEQAEL 240 (589)
Q Consensus 161 ~RLqe~~~~~r~ekl~~~e~~l~~~~~l~~~~~~~~~~~~~~~L~~~g~~~~~~l~~~i~~l~~~~~~~~~~~~~~~~e~ 240 (589)
T Consensus 234 -------------------------------------------------------------------------------- 233 (376)
T PTZ00281 234 -------------------------------------------------------------------------------- 233 (376)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhhhcccCCCCCCccCCCccCCHHHHHHHHHhhhhccChHHHHHHHHHHHHHHHHHHHHhHHHHHHhhcChHHHHHHHHH
Q 007811 241 EKTDASMNEKYPLIHIPDNMLSLEQLKEKRRQIFLKTTTEGRQRAKQKRVEEELEQEKKNQEEEERRLENPELYVEQMRA 320 (589)
Q Consensus 241 ~~~~~~~~~~~~Ll~~pd~~l~~~~~keKr~q~~lk~~~~ar~~~k~~~~~ek~~~~~~~~~~e~~~~~~~~~~~~~~r~ 320 (589)
T Consensus 234 -------------------------------------------------------------------------------- 233 (376)
T PTZ00281 234 -------------------------------------------------------------------------------- 233 (376)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCcccccHHHHHHHHHhhhhhhccCCCCCCCCCCchhhHHHHHhhcCCC
Q 007811 321 KYKELSEKIDQRKRLKTNGNHTNGNNTSGGVGRGERLNAAQRERMRLLTTAAFDRGKGEDTFGAKDEDWQLYKLMSRDND 400 (589)
Q Consensus 321 ~~~~i~~~~~~r~~~~~~l~~~~~~~~~~~~~~~~r~s~a~~~rm~~i~~~~~~~~~~~d~fg~~d~dw~vy~~i~~~~~ 400 (589)
.
T Consensus 234 ------------------~------------------------------------------------------------- 234 (376)
T PTZ00281 234 ------------------S------------------------------------------------------------- 234 (376)
T ss_pred ------------------C-------------------------------------------------------------
Confidence 0
Q ss_pred CCchhhhHHHHHHHHHHHhhhhcCCCCCCCCCCCCCCccCCCCccccCCCCCeEEEeCceeccccccCcCCCCCCCCCCC
Q 007811 401 DDDEEMDENEAELARISARLQEVDPTFVPKQESGPTQSAAEIPRVRPLTKEDFQIVLGVERFRCPEILFRPNWVGIDQVG 480 (589)
Q Consensus 401 ~~~~d~e~~~~~l~~le~~L~~~Dp~F~~~~~~~~~~~~~~~~~~y~lp~~~~~I~lg~ERf~~pE~LF~Psl~g~~~~G 480 (589)
+ .+...|+||++ +.|+|+.|||.|||+||+|+++|.+..|
T Consensus 235 ---------------------------------~------~~~~~y~LPdg-~~i~i~~er~~~~E~LF~P~~~~~~~~g 274 (376)
T PTZ00281 235 ---------------------------------S------ALEKSYELPDG-QVITIGNERFRCPEALFQPSFLGMESAG 274 (376)
T ss_pred ---------------------------------c------ccceeEECCCC-CEEEeeHHHeeCcccccChhhcCCCCCC
Confidence 0 01134677888 8999999999999999999999999999
Q ss_pred cchhHHHHhhcCCCCChhhhHhhcCCeEEecCCCCCCChHHHHHHHHHhhcCCCCCeEEEeCCCCccceeechhhhcccC
Q 007811 481 LDEMTGVSIRRLPTKDEDLEQRLTSSILMTGGCCLFPGMSERLEAGIRMIRPCGAPIKVVRALDPVLDAWRGASVYATKL 560 (589)
Q Consensus 481 L~e~I~~sI~~~~~c~~d~r~~L~~NIvLtGG~S~~~Gf~eRL~~EL~~l~p~~~~v~V~~~~d~~~~aW~Ggsilasl~ 560 (589)
|+++|.+||. +||+|+|+.||+|||||||+|+||||.+||++||+.+.|...+++|+.+++|.+++|+|||+||+++
T Consensus 275 i~~~i~~sI~---~~~~d~r~~L~~nIvl~GG~s~~~Gf~~RL~~El~~~~p~~~~v~v~~~~~r~~~aW~Ggsilasl~ 351 (376)
T PTZ00281 275 IHETTYNSIM---KCDVDIRKDLYGNVVLSGGTTMFPGIADRMNKELTALAPSTMKIKIIAPPERKYSVWIGGSILASLS 351 (376)
T ss_pred HHHHHHHHHH---hCChhHHHHHHhhccccCccccCcCHHHHHHHHHHHhCCCCcceEEecCCCCceeEEECcccccCcc
Confidence 9999999996 6799999999999999999999999999999999999998889999999999999999999999999
Q ss_pred CCCccceeHHHHhhhchHHHHHhhc
Q 007811 561 QFPQQTFSRMDYYEKGENWLRRYQL 585 (589)
Q Consensus 561 ~f~~~wITk~EY~E~G~~iv~~k~~ 585 (589)
+|+++||||+||+|+|++++++|||
T Consensus 352 ~f~~~~vtk~eY~E~G~~~~~~k~~ 376 (376)
T PTZ00281 352 TFQQMWISKEEYDESGPSIVHRKCF 376 (376)
T ss_pred cHhhceeeHHHHhhhCchheeeecC
Confidence 9999999999999999999999986
No 6
>PTZ00004 actin-2; Provisional
Probab=100.00 E-value=1.7e-57 Score=487.12 Aligned_cols=258 Identities=28% Similarity=0.494 Sum_probs=235.8
Q ss_pred ChhhhhhhcCCCeEeeehhHHHhhhhhccCCCCCCcceeeeCCCcceEEEeecCCccccccceecccccchhHHHHHHhh
Q 007811 1 MAELLFETYGVPSVAFGVDAAFSYKYNQQYGICNKDGLAICPGFSTTHVIPFVEGEPVYRGSCRTNIGGYHITDYLKQLL 80 (589)
Q Consensus 1 m~EiLFE~f~vPsv~~~~qsvLSlya~g~~~~~~~tGLVVD~G~~~T~VvPV~eG~~l~~a~~rl~~GG~~lt~~L~~lL 80 (589)
|+|+|||+|+||+++++++++||+|++| .+||||||+|++.|+|+||++|+++.+++.++++||+++|+||.++|
T Consensus 120 ~~e~lFE~~~~~~~~~~~~~~ls~ya~g-----~~tglVVDiG~~~t~v~pV~dG~~l~~~~~~~~~GG~~lt~~L~~lL 194 (378)
T PTZ00004 120 MTQIMFETHNVPAMYVAIQAVLSLYASG-----RTTGIVLDSGDGVSHTVPIYEGYSLPHAIHRLDVAGRDLTEYMMKIL 194 (378)
T ss_pred HHHHHHhhcCCceEEeeccHHHHHHhcC-----CceEEEEECCCCcEEEEEEECCEEeecceeeecccHHHHHHHHHHHH
Confidence 5799999999999999999999999999 89999999999999999999999999999999999999999999999
Q ss_pred hccCCCCCCCCCHHHHHHHHhcccccccChHHHHHHHhcCcccccccceeeeCCCCCCCCCCCCCHHHHHHHHHHHHHHh
Q 007811 81 SLKHPQHMTKLTWEKVEDLKMEHCYIAPDYFSEAQLFQKGTKEAEHKTRCWQLPWVPPPTEEPPSEEEIARKAAIKERQG 160 (589)
Q Consensus 81 ~~k~~~~~~~~~~~~v~~IKE~~CyVa~Dy~~El~~~~~~~~~~~~~~~~~qlP~~~~~~~~~~t~eel~~~~~rr~~~~ 160 (589)
..+++.+.+.....++++|||++|||+.||.+++......
T Consensus 195 ~~~~~~~~~~~~~~~~~~iKe~~c~v~~d~~~~~~~~~~~---------------------------------------- 234 (378)
T PTZ00004 195 HERGTTFTTTAEKEIVRDIKEKLCYIALDFDEEMGNSAGS---------------------------------------- 234 (378)
T ss_pred HhcCCCCCcHHHHHHHHHHhhcceeecCCHHHHHhhhhcC----------------------------------------
Confidence 9998877666678899999999999999886654221000
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhhcHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHHhhhcchhhhhhh
Q 007811 161 QRLREMAEAKRSSRINELENQIHGLEFLLQQLEQVEENDIAAFLSDTGYVSRQEIESTLVKLTQSLRKAKGERKVEQAEL 240 (589)
Q Consensus 161 ~RLqe~~~~~r~ekl~~~e~~l~~~~~l~~~~~~~~~~~~~~~L~~~g~~~~~~l~~~i~~l~~~~~~~~~~~~~~~~e~ 240 (589)
T Consensus 235 -------------------------------------------------------------------------------- 234 (378)
T PTZ00004 235 -------------------------------------------------------------------------------- 234 (378)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhhhcccCCCCCCccCCCccCCHHHHHHHHHhhhhccChHHHHHHHHHHHHHHHHHHHHhHHHHHHhhcChHHHHHHHHH
Q 007811 241 EKTDASMNEKYPLIHIPDNMLSLEQLKEKRRQIFLKTTTEGRQRAKQKRVEEELEQEKKNQEEEERRLENPELYVEQMRA 320 (589)
Q Consensus 241 ~~~~~~~~~~~~Ll~~pd~~l~~~~~keKr~q~~lk~~~~ar~~~k~~~~~ek~~~~~~~~~~e~~~~~~~~~~~~~~r~ 320 (589)
T Consensus 235 -------------------------------------------------------------------------------- 234 (378)
T PTZ00004 235 -------------------------------------------------------------------------------- 234 (378)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCcccccHHHHHHHHHhhhhhhccCCCCCCCCCCchhhHHHHHhhcCCC
Q 007811 321 KYKELSEKIDQRKRLKTNGNHTNGNNTSGGVGRGERLNAAQRERMRLLTTAAFDRGKGEDTFGAKDEDWQLYKLMSRDND 400 (589)
Q Consensus 321 ~~~~i~~~~~~r~~~~~~l~~~~~~~~~~~~~~~~r~s~a~~~rm~~i~~~~~~~~~~~d~fg~~d~dw~vy~~i~~~~~ 400 (589)
.
T Consensus 235 ------------------~------------------------------------------------------------- 235 (378)
T PTZ00004 235 ------------------S------------------------------------------------------------- 235 (378)
T ss_pred ------------------c-------------------------------------------------------------
Confidence 0
Q ss_pred CCchhhhHHHHHHHHHHHhhhhcCCCCCCCCCCCCCCccCCCCccccCCCCCeEEEeCceeccccccCcCCCCCCCC-CC
Q 007811 401 DDDEEMDENEAELARISARLQEVDPTFVPKQESGPTQSAAEIPRVRPLTKEDFQIVLGVERFRCPEILFRPNWVGID-QV 479 (589)
Q Consensus 401 ~~~~d~e~~~~~l~~le~~L~~~Dp~F~~~~~~~~~~~~~~~~~~y~lp~~~~~I~lg~ERf~~pE~LF~Psl~g~~-~~ 479 (589)
......|.||+| +.|+|+.|||.|||+||+|+++|.+ ..
T Consensus 236 ---------------------------------------~~~~~~y~lPdg-~~i~l~~er~~~~E~LF~P~~~~~~~~~ 275 (378)
T PTZ00004 236 ---------------------------------------DKYEESYELPDG-TIITVGSERFRCPEALFQPSLIGKEEPP 275 (378)
T ss_pred ---------------------------------------cccceEEECCCC-CEEEEcHHHeeCcccccChhhcCccccC
Confidence 001134677888 8999999999999999999999998 99
Q ss_pred CcchhHHHHhhcCCCCChhhhHhhcCCeEEecCCCCCCChHHHHHHHHHhhcCCCCCeEEEeCCCCccceeechhhhccc
Q 007811 480 GLDEMTGVSIRRLPTKDEDLEQRLTSSILMTGGCCLFPGMSERLEAGIRMIRPCGAPIKVVRALDPVLDAWRGASVYATK 559 (589)
Q Consensus 480 GL~e~I~~sI~~~~~c~~d~r~~L~~NIvLtGG~S~~~Gf~eRL~~EL~~l~p~~~~v~V~~~~d~~~~aW~Ggsilasl 559 (589)
||+++|.+||. +||+|+|+.|++|||||||+|+||||.+||++||+.++|...+++|..+++|.+++|+||||||++
T Consensus 276 gi~~~i~~sI~---~~~~d~r~~L~~nIvl~GG~s~~~Gf~~RL~~EL~~~~p~~~~~~v~~~~~~~~~aW~Ggsilas~ 352 (378)
T PTZ00004 276 GIHELTFQSIN---KCDIDIRKDLYGNIVLSGGTTMYRGLPERLTKELTTLAPSTMKIKVVAPPERKYSVWIGGSILSSL 352 (378)
T ss_pred ChHHHHHHHHH---hCChhHHHHHHhhEEeccchhcCcCHHHHHHHHHHHhCCCCccEEEecCCCCceeEEECcccccCc
Confidence 99999999996 679999999999999999999999999999999999999988999999999999999999999999
Q ss_pred CCCCccceeHHHHhhhchHHHHHhhc
Q 007811 560 LQFPQQTFSRMDYYEKGENWLRRYQL 585 (589)
Q Consensus 560 ~~f~~~wITk~EY~E~G~~iv~~k~~ 585 (589)
++|+++||||+||+|+|++++++|||
T Consensus 353 ~~f~~~~vtk~eYeE~G~~~~~rk~~ 378 (378)
T PTZ00004 353 PTFQQMWVTKEEYDESGPSIVHRKCF 378 (378)
T ss_pred cchhhhEeEHHHHhhhCcceEEeecC
Confidence 99999999999999999999999986
No 7
>PTZ00280 Actin-related protein 3; Provisional
Probab=100.00 E-value=6.9e-55 Score=472.09 Aligned_cols=263 Identities=25% Similarity=0.432 Sum_probs=227.1
Q ss_pred ChhhhhhhcCCCeEeeehhHHHhhhhh----------ccCCCCCCcceeeeCCCcceEEEeecCCccccccceecccccc
Q 007811 1 MAELLFETYGVPSVAFGVDAAFSYKYN----------QQYGICNKDGLAICPGFSTTHVIPFVEGEPVYRGSCRTNIGGY 70 (589)
Q Consensus 1 m~EiLFE~f~vPsv~~~~qsvLSlya~----------g~~~~~~~tGLVVD~G~~~T~VvPV~eG~~l~~a~~rl~~GG~ 70 (589)
|+|+|||+|+||+++++.+++||+||+ | .+||||||+|++.|+|+||++|+++.++++++++||.
T Consensus 121 l~e~lFE~~~~p~i~~~~~~~lslya~~~~~~~~~~~g-----~~tglVVDiG~~~T~i~PV~~G~~l~~~~~~~~~GG~ 195 (414)
T PTZ00280 121 TAEIMFETFNVKGLYIAVQAVLALRASWTSKKAKELGG-----TLTGTVIDSGDGVTHVIPVVDGYVIGSSIKHIPLAGR 195 (414)
T ss_pred HHHHHhhccCCCeEEEecCHHHhHhhhcccccccccCC-----ceeEEEEECCCCceEEEEEECCEEcccceEEecCcHH
Confidence 589999999999999999999999999 6 7899999999999999999999999999999999999
Q ss_pred hhHHHHHHhhhccCCCCCCCCCHHHHHHHHhcccccccChHHHHHHHhcCcccccccceeeeCCCCCCCCCCCCCHHHHH
Q 007811 71 HITDYLKQLLSLKHPQHMTKLTWEKVEDLKMEHCYIAPDYFSEAQLFQKGTKEAEHKTRCWQLPWVPPPTEEPPSEEEIA 150 (589)
Q Consensus 71 ~lt~~L~~lL~~k~~~~~~~~~~~~v~~IKE~~CyVa~Dy~~El~~~~~~~~~~~~~~~~~qlP~~~~~~~~~~t~eel~ 150 (589)
++|+||.++|..+++.+.+.....++++|||++|||+.||..|+..+...+ .
T Consensus 196 ~lt~~L~~lL~~~~~~~~~~~~~~~~~~iKe~~c~v~~d~~~e~~~~~~~~-----------------------~----- 247 (414)
T PTZ00280 196 DITNFIQQMLRERGEPIPAEDILLLAQRIKEKYCYVAPDIAKEFEKYDSDP-----------------------K----- 247 (414)
T ss_pred HHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHhcCcccCcHHHHHHHhhcCc-----------------------c-----
Confidence 999999999999988887666788999999999999999877765431100 0
Q ss_pred HHHHHHHHHhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhhcHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHHhh
Q 007811 151 RKAAIKERQGQRLREMAEAKRSSRINELENQIHGLEFLLQQLEQVEENDIAAFLSDTGYVSRQEIESTLVKLTQSLRKAK 230 (589)
Q Consensus 151 ~~~~rr~~~~~RLqe~~~~~r~ekl~~~e~~l~~~~~l~~~~~~~~~~~~~~~L~~~g~~~~~~l~~~i~~l~~~~~~~~ 230 (589)
T Consensus 248 -------------------------------------------------------------------------------- 247 (414)
T PTZ00280 248 -------------------------------------------------------------------------------- 247 (414)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hcchhhhhhhhhhhcccCCCCCCccCCCccCCHHHHHHHHHhhhhccChHHHHHHHHHHHHHHHHHHHHhHHHHHHhhcC
Q 007811 231 GERKVEQAELEKTDASMNEKYPLIHIPDNMLSLEQLKEKRRQIFLKTTTEGRQRAKQKRVEEELEQEKKNQEEEERRLEN 310 (589)
Q Consensus 231 ~~~~~~~~e~~~~~~~~~~~~~Ll~~pd~~l~~~~~keKr~q~~lk~~~~ar~~~k~~~~~ek~~~~~~~~~~e~~~~~~ 310 (589)
.....|.
T Consensus 248 ---------------~~~~~~~---------------------------------------------------------- 254 (414)
T PTZ00280 248 ---------------NHFKKYT---------------------------------------------------------- 254 (414)
T ss_pred ---------------cccceEE----------------------------------------------------------
Confidence 0000111
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCcccccHHHHHHHHHhhhhhhccCCCCCCCCCCchhhH
Q 007811 311 PELYVEQMRAKYKELSEKIDQRKRLKTNGNHTNGNNTSGGVGRGERLNAAQRERMRLLTTAAFDRGKGEDTFGAKDEDWQ 390 (589)
Q Consensus 311 ~~~~~~~~r~~~~~i~~~~~~r~~~~~~l~~~~~~~~~~~~~~~~r~s~a~~~rm~~i~~~~~~~~~~~d~fg~~d~dw~ 390 (589)
++
T Consensus 255 ----------------------------~~-------------------------------------------------- 256 (414)
T PTZ00280 255 ----------------------------AV-------------------------------------------------- 256 (414)
T ss_pred ----------------------------CC--------------------------------------------------
Confidence 10
Q ss_pred HHHHhhcCCCCCchhhhHHHHHHHHHHHhhhhcCCCCCCCCCCCCCCccCCCCccccCCCCCeEEEeCceeccccccCcC
Q 007811 391 LYKLMSRDNDDDDEEMDENEAELARISARLQEVDPTFVPKQESGPTQSAAEIPRVRPLTKEDFQIVLGVERFRCPEILFR 470 (589)
Q Consensus 391 vy~~i~~~~~~~~~d~e~~~~~l~~le~~L~~~Dp~F~~~~~~~~~~~~~~~~~~y~lp~~~~~I~lg~ERf~~pE~LF~ 470 (589)
|. . ++.+++|.|+.|||+|||+||+
T Consensus 257 ---------d~--------------------------------~--------------~g~~~~i~l~~erf~~~E~LF~ 281 (414)
T PTZ00280 257 ---------NS--------------------------------V--------------TKKPYTVDVGYERFLGPEMFFH 281 (414)
T ss_pred ---------CC--------------------------------C--------------CCCccEEEechHHhcCcccccC
Confidence 00 0 0112689999999999999999
Q ss_pred CCCCCCC-CCCcchhHHHHhhcCCCCChhhhHhhcCCeEEecCCCCCCChHHHHHHHHHhhc----------------CC
Q 007811 471 PNWVGID-QVGLDEMTGVSIRRLPTKDEDLEQRLTSSILMTGGCCLFPGMSERLEAGIRMIR----------------PC 533 (589)
Q Consensus 471 Psl~g~~-~~GL~e~I~~sI~~~~~c~~d~r~~L~~NIvLtGG~S~~~Gf~eRL~~EL~~l~----------------p~ 533 (589)
|+++|.+ ..||+++|.+||. +||+|+|+.||+|||||||+|+||||.+||++||..++ |.
T Consensus 282 P~~~~~~~~~gl~e~i~~sI~---~~~~d~r~~L~~nIvL~GG~s~~~Gf~eRL~~El~~~~~~~~~~~~~~~~~~~~~~ 358 (414)
T PTZ00280 282 PEIFSSEWTTPLPEVVDDAIQ---SCPIDCRRPLYKNIVLSGGSTMFKGFDKRLQRDVRKRVDRRLKKAEELSGGKLKPI 358 (414)
T ss_pred hhhcCCccCCCHHHHHHHHHH---hCChhhHHHHhhcEEEeCCcccCcCHHHHHHHHHHHhccccccccccccccccCCC
Confidence 9999766 4599999999996 57999999999999999999999999999999999986 44
Q ss_pred CCCeEEEeCCCCccceeechhhhcccCCCCccceeHHHHhhhchHHHHHhhc
Q 007811 534 GAPIKVVRALDPVLDAWRGASVYATKLQFPQQTFSRMDYYEKGENWLRRYQL 585 (589)
Q Consensus 534 ~~~v~V~~~~d~~~~aW~Ggsilasl~~f~~~wITk~EY~E~G~~iv~~k~~ 585 (589)
.++|+|+.++++.+++|+||||||++++|+++||||+||+|+|+++|+++.+
T Consensus 359 ~~~v~v~~~~~~~~~~W~GgSilas~~~f~~~~itk~eY~E~G~~i~~~~~~ 410 (414)
T PTZ00280 359 PIDVNVVSHPRQRYAVWYGGSMLASSPEFEKVCHTKAEYDEYGPSICRYNNV 410 (414)
T ss_pred CceEEEecCCccceeEEEChhhcccCcchhhheEEHHHHhccChHheeeccc
Confidence 6678999999999999999999999999999999999999999999998744
No 8
>KOG0677 consensus Actin-related protein Arp2/3 complex, subunit Arp2 [Cytoskeleton]
Probab=100.00 E-value=1.6e-53 Score=419.85 Aligned_cols=255 Identities=26% Similarity=0.408 Sum_probs=228.9
Q ss_pred ChhhhhhhcCCCeEeeehhHHHhhhhhccCCCCCCcceeeeCCCcceEEEeecCCccccccceecccccchhHHHHHHhh
Q 007811 1 MAELLFETYGVPSVAFGVDAAFSYKYNQQYGICNKDGLAICPGFSTTHVIPFVEGEPVYRGSCRTNIGGYHITDYLKQLL 80 (589)
Q Consensus 1 m~EiLFE~f~vPsv~~~~qsvLSlya~g~~~~~~~tGLVVD~G~~~T~VvPV~eG~~l~~a~~rl~~GG~~lt~~L~~lL 80 (589)
|+|+|||+|++.++|+++|+||+|||.| ..||+|||+|.++|||||||+|++++|-++|++++|+++|.||.+||
T Consensus 120 m~evMFEkY~F~gvyvaiQAVLtLYAQG-----L~tGvVvDSGDGVTHi~PVye~~~l~HLtrRldvAGRdiTryLi~LL 194 (389)
T KOG0677|consen 120 MIEVMFEKYGFGGVYVAIQAVLTLYAQG-----LLTGVVVDSGDGVTHIVPVYEGFVLPHLTRRLDVAGRDITRYLIKLL 194 (389)
T ss_pred HHHHHHHHcCCCeEEehHHHHHHHHHhc-----ccceEEEecCCCeeEEeeeecceehhhhhhhccccchhHHHHHHHHH
Confidence 6899999999999999999999999999 89999999999999999999999999999999999999999999999
Q ss_pred hccCCCCCCCCCHHHHHHHHhcccccccChHHHHHHHhcCcccccccceeeeCCCCCCCCCCCCCHHHHHHHHHHHHHHh
Q 007811 81 SLKHPQHMTKLTWEKVEDLKMEHCYIAPDYFSEAQLFQKGTKEAEHKTRCWQLPWVPPPTEEPPSEEEIARKAAIKERQG 160 (589)
Q Consensus 81 ~~k~~~~~~~~~~~~v~~IKE~~CyVa~Dy~~El~~~~~~~~~~~~~~~~~qlP~~~~~~~~~~t~eel~~~~~rr~~~~ 160 (589)
..+|+.|...+++++|+.|||++|||+.|++.|-+....
T Consensus 195 l~rGYafN~tADFETVR~iKEKLCYisYd~e~e~kLalE----------------------------------------- 233 (389)
T KOG0677|consen 195 LRRGYAFNHTADFETVREIKEKLCYISYDLELEQKLALE----------------------------------------- 233 (389)
T ss_pred HhhccccccccchHHHHHHHhhheeEeechhhhhHhhhh-----------------------------------------
Confidence 999999999999999999999999999887555221100
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhhcHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHHhhhcchhhhhhh
Q 007811 161 QRLREMAEAKRSSRINELENQIHGLEFLLQQLEQVEENDIAAFLSDTGYVSRQEIESTLVKLTQSLRKAKGERKVEQAEL 240 (589)
Q Consensus 161 ~RLqe~~~~~r~ekl~~~e~~l~~~~~l~~~~~~~~~~~~~~~L~~~g~~~~~~l~~~i~~l~~~~~~~~~~~~~~~~e~ 240 (589)
T Consensus 234 -------------------------------------------------------------------------------- 233 (389)
T KOG0677|consen 234 -------------------------------------------------------------------------------- 233 (389)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhhhcccCCCCCCccCCCccCCHHHHHHHHHhhhhccChHHHHHHHHHHHHHHHHHHHHhHHHHHHhhcChHHHHHHHHH
Q 007811 241 EKTDASMNEKYPLIHIPDNMLSLEQLKEKRRQIFLKTTTEGRQRAKQKRVEEELEQEKKNQEEEERRLENPELYVEQMRA 320 (589)
Q Consensus 241 ~~~~~~~~~~~~Ll~~pd~~l~~~~~keKr~q~~lk~~~~ar~~~k~~~~~ek~~~~~~~~~~e~~~~~~~~~~~~~~r~ 320 (589)
T Consensus 234 -------------------------------------------------------------------------------- 233 (389)
T KOG0677|consen 234 -------------------------------------------------------------------------------- 233 (389)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCcccccHHHHHHHHHhhhhhhccCCCCCCCCCCchhhHHHHHhhcCCC
Q 007811 321 KYKELSEKIDQRKRLKTNGNHTNGNNTSGGVGRGERLNAAQRERMRLLTTAAFDRGKGEDTFGAKDEDWQLYKLMSRDND 400 (589)
Q Consensus 321 ~~~~i~~~~~~r~~~~~~l~~~~~~~~~~~~~~~~r~s~a~~~rm~~i~~~~~~~~~~~d~fg~~d~dw~vy~~i~~~~~ 400 (589)
.
T Consensus 234 ------------------T------------------------------------------------------------- 234 (389)
T KOG0677|consen 234 ------------------T------------------------------------------------------------- 234 (389)
T ss_pred ------------------h-------------------------------------------------------------
Confidence 0
Q ss_pred CCchhhhHHHHHHHHHHHhhhhcCCCCCCCCCCCCCCccCCCCccccCCCCCeEEEeCceeccccccCcCCCCCCCCCCC
Q 007811 401 DDDEEMDENEAELARISARLQEVDPTFVPKQESGPTQSAAEIPRVRPLTKEDFQIVLGVERFRCPEILFRPNWVGIDQVG 480 (589)
Q Consensus 401 ~~~~d~e~~~~~l~~le~~L~~~Dp~F~~~~~~~~~~~~~~~~~~y~lp~~~~~I~lg~ERf~~pE~LF~Psl~g~~~~G 480 (589)
+ -+...|+||+| ..|.+|.|||.+||+||+|.++..+.+|
T Consensus 235 -------------------------------T--------vLv~~YtLPDG-RvIkvG~ERFeAPE~LFqP~Li~VE~~G 274 (389)
T KOG0677|consen 235 -------------------------------T--------VLVESYTLPDG-RVIKVGGERFEAPEALFQPHLINVEGPG 274 (389)
T ss_pred -------------------------------e--------eeeeeeecCCC-cEEEecceeccCchhhcCcceeccCCCc
Confidence 0 01234778898 9999999999999999999999999999
Q ss_pred cchhHHHHhhcCCCCChhhhHhhcCCeEEecCCCCCCChHHHHHHHHHhhcC-----------CCCCeEEEeCCCCccce
Q 007811 481 LDEMTGVSIRRLPTKDEDLEQRLTSSILMTGGCCLFPGMSERLEAGIRMIRP-----------CGAPIKVVRALDPVLDA 549 (589)
Q Consensus 481 L~e~I~~sI~~~~~c~~d~r~~L~~NIvLtGG~S~~~Gf~eRL~~EL~~l~p-----------~~~~v~V~~~~d~~~~a 549 (589)
+.++++++|+ ..|+|+|..||++|||+||+|+.||+..||.+||+.+.- ...+|+|-.||.|.+.+
T Consensus 275 ~aellF~~iQ---aaDiD~R~~lYkhIVLSGGstMYPGLPSRLEkElkqlyl~rVL~~d~~~l~KfkiRIEdPPrRKhMV 351 (389)
T KOG0677|consen 275 VAELLFNTIQ---AADIDIRSELYKHIVLSGGSTMYPGLPSRLEKELKQLYLDRVLKGDTDKLKKFKIRIEDPPRRKHMV 351 (389)
T ss_pred HHHHHHHHHH---HhccchHHHHHhHeeecCCcccCCCCcHHHHHHHHHHHHHHHHcCChhhhhheEEeccCCCccceeE
Confidence 9999999996 569999999999999999999999999999999987641 12467788899999999
Q ss_pred eechhhhccc-CCCCccceeHHHHhhhchHHHHHh
Q 007811 550 WRGASVYATK-LQFPQQTFSRMDYYEKGENWLRRY 583 (589)
Q Consensus 550 W~Ggsilasl-~~f~~~wITk~EY~E~G~~iv~~k 583 (589)
|+||++||++ ..-..+|+||+||+|.|..++.+.
T Consensus 352 flGGAVLA~imkD~d~fW~skqeyqE~G~~~l~k~ 386 (389)
T KOG0677|consen 352 FLGGAVLAGIMKDKDEFWMSKQEYQEEGINVLNKL 386 (389)
T ss_pred EEchHHHHHHhcCCccceecHHHHHhhhHHHHHhh
Confidence 9999999986 445688999999999999999875
No 9
>PF00022 Actin: Actin; InterPro: IPR004000 Actin [, ] is a ubiquitous protein involved in the formation of filaments that are major components of the cytoskeleton. These filaments interact with myosin to produce a sliding effect, which is the basis of muscular contraction and many aspects of cell motility, including cytokinesis. Each actin protomer binds one molecule of ATP and has one high affinity site for either calcium or magnesium ions, as well as several low affinity sites. Actin exists as a monomer in low salt concentrations, but filaments form rapidly as salt concentration rises, with the consequent hydrolysis of ATP. Actin from many sources forms a tight complex with deoxyribonuclease (DNase I) although the significance of this is still unknown. The formation of this complex results in the inhibition of DNase I activity, and actin loses its ability to polymerise. It has been shown that an ATPase domain of actin shares similarity with ATPase domains of hexokinase and hsp70 proteins [, ]. In vertebrates there are three groups of actin isoforms: alpha, beta and gamma. The alpha actins are found in muscle tissues and are a major constituent of the contractile apparatus. The beta and gamma actins co-exists in most cell types as components of the cytoskeleton and as mediators of internal cell motility. In plants there are many isoforms which are probably involved in a variety of functions such as cytoplasmic streaming, cell shape determination, tip growth, graviperception, cell wall deposition, etc. Recently some divergent actin-like proteins have been identified in several species. These proteins include centractin (actin-RPV) from mammals, fungi yeast ACT5, Neurospora crassa ro-4) and Pneumocystis carinii, which seems to be a component of a multi-subunit centrosomal complex involved in microtubule based vesicle motility (this subfamily is known as ARP1); ARP2 subfamily, which includes chicken ACTL, Saccharomyces cerevisiae ACT2, Drosophila melanogaster 14D and Caenorhabditis elegans actC; ARP3 subfamily, which includes actin 2 from mammals, Drosophila 66B, yeast ACT4 and Schizosaccharomyces pombe act2; and ARP4 subfamily, which includes yeast ACT3 and Drosophila 13E.; PDB: 2OAN_B 1HLU_A 2BTF_A 3UB5_A 3U4L_A 4EFH_A 1YVN_A 1YAG_A 1D4X_A 1MDU_B ....
Probab=100.00 E-value=2e-52 Score=447.90 Aligned_cols=137 Identities=38% Similarity=0.611 Sum_probs=127.9
Q ss_pred cccCCCCCeEEEeCceeccccccCcCCCCCCCCCC-------CcchhHHHHhhcCCCCChhhhHhhcCCeEEecCCCCCC
Q 007811 445 VRPLTKEDFQIVLGVERFRCPEILFRPNWVGIDQV-------GLDEMTGVSIRRLPTKDEDLEQRLTSSILMTGGCCLFP 517 (589)
Q Consensus 445 ~y~lp~~~~~I~lg~ERf~~pE~LF~Psl~g~~~~-------GL~e~I~~sI~~~~~c~~d~r~~L~~NIvLtGG~S~~~ 517 (589)
.|.||++ +.+.++.|||++||+||+|+.+|.+.. ||+++|.+||. +||+|+|+.|++|||||||+|+||
T Consensus 249 ~~~lPdg-~~i~~~~er~~~~E~LF~p~~~~~~~~~~~~~~~gL~~~I~~si~---~~~~d~r~~l~~nIvl~GG~S~i~ 324 (393)
T PF00022_consen 249 SYELPDG-QTIILGKERFRIPEILFNPSLIGIDSASEPSEFMGLPELILDSIS---KCPIDLRKELLSNIVLTGGSSLIP 324 (393)
T ss_dssp EEE-TTS-SEEEESTHHHHHHHTTTSGGGGTSSSTS---SSSCHHHHHHHHHH---TSTTTTHHHHHTTEEEESGGGGST
T ss_pred ecccccc-cccccccccccccccccccccccccccccccccchhhhhhhhhhh---ccccccccccccceEEeccccccc
Confidence 4677888 799999999999999999999999877 99999999996 579999999999999999999999
Q ss_pred ChHHHHHHHHHhhcCCCCCeEEEeCC-CCccceeechhhhcccCCCCccceeHHHHhhhchHHHHHhhc
Q 007811 518 GMSERLEAGIRMIRPCGAPIKVVRAL-DPVLDAWRGASVYATKLQFPQQTFSRMDYYEKGENWLRRYQL 585 (589)
Q Consensus 518 Gf~eRL~~EL~~l~p~~~~v~V~~~~-d~~~~aW~Ggsilasl~~f~~~wITk~EY~E~G~~iv~~k~~ 585 (589)
||.+||+.||..+.|...+++|+.++ +|.+++|+||||||++++|+++||||+||+|+|+++|++|||
T Consensus 325 G~~eRL~~eL~~~~~~~~~~~v~~~~~~~~~~aW~Ggsilasl~~f~~~~itr~eYeE~G~~~i~rkc~ 393 (393)
T PF00022_consen 325 GFKERLQQELRSLLPSSTKVKVIAPPSDRQFAAWIGGSILASLSSFQSFWITREEYEEYGPSIIHRKCF 393 (393)
T ss_dssp THHHHHHHHHHHHSGTTSTEEEE--T-TTTSHHHHHHHHHHTSGGGGGTSEEHHHHHHHGGGGHHHHT-
T ss_pred chHHHHHHHhhhhhhccccceeccCchhhhhcccccceeeeccccccceeeeHHHHhCcCcceeeecCC
Confidence 99999999999999999999999999 999999999999999999999999999999999999999997
No 10
>smart00268 ACTIN Actin. ACTIN subfamily of ACTIN/mreB/sugarkinase/Hsp70 superfamily
Probab=100.00 E-value=1.3e-50 Score=431.90 Aligned_cols=260 Identities=31% Similarity=0.549 Sum_probs=233.3
Q ss_pred ChhhhhhhcCCCeEeeehhHHHhhhhhccCCCCCCcceeeeCCCcceEEEeecCCccccccceecccccchhHHHHHHhh
Q 007811 1 MAELLFETYGVPSVAFGVDAAFSYKYNQQYGICNKDGLAICPGFSTTHVIPFVEGEPVYRGSCRTNIGGYHITDYLKQLL 80 (589)
Q Consensus 1 m~EiLFE~f~vPsv~~~~qsvLSlya~g~~~~~~~tGLVVD~G~~~T~VvPV~eG~~l~~a~~rl~~GG~~lt~~L~~lL 80 (589)
|+|+|||.|+||+++++.++++++|++| .++|||||+|++.|+|+||++|+++.++++++++||.+++++|.++|
T Consensus 114 ~~e~lfE~~~~~~v~~~~~~~~a~~~~g-----~~~~lVVDiG~~~t~v~pv~~G~~~~~~~~~~~~GG~~l~~~l~~~l 188 (373)
T smart00268 114 ILEIMFETFNFPALYIAIQAVLSLYASG-----RTTGLVIDSGDGVTHVVPVVDGYVLPHAIKRIDIAGRDLTDYLKELL 188 (373)
T ss_pred HHHHhhccCCCCeEEEeccHHHHHHhCC-----CCEEEEEecCCCcceEEEEECCEEchhhheeccCcHHHHHHHHHHHH
Confidence 5799999999999999999999999999 89999999999999999999999999999999999999999999999
Q ss_pred hccCCCCCCCCCHHHHHHHHhcccccccChHHHHHHHhcCcccccccceeeeCCCCCCCCCCCCCHHHHHHHHHHHHHHh
Q 007811 81 SLKHPQHMTKLTWEKVEDLKMEHCYIAPDYFSEAQLFQKGTKEAEHKTRCWQLPWVPPPTEEPPSEEEIARKAAIKERQG 160 (589)
Q Consensus 81 ~~k~~~~~~~~~~~~v~~IKE~~CyVa~Dy~~El~~~~~~~~~~~~~~~~~qlP~~~~~~~~~~t~eel~~~~~rr~~~~ 160 (589)
...+..+....+..++++||+++|||+.+|..++......
T Consensus 189 ~~~~~~~~~~~~~~~~~~iKe~~~~v~~~~~~~~~~~~~~---------------------------------------- 228 (373)
T smart00268 189 SERGYQFNSSAEFEIVREIKEKLCYVAEDFEKEMKKARES---------------------------------------- 228 (373)
T ss_pred HhcCCCCCcHHHHHHHHHhhhheeeecCChHHHHHHhhhc----------------------------------------
Confidence 8865555555678899999999999998876554321100
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhhcHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHHhhhcchhhhhhh
Q 007811 161 QRLREMAEAKRSSRINELENQIHGLEFLLQQLEQVEENDIAAFLSDTGYVSRQEIESTLVKLTQSLRKAKGERKVEQAEL 240 (589)
Q Consensus 161 ~RLqe~~~~~r~ekl~~~e~~l~~~~~l~~~~~~~~~~~~~~~L~~~g~~~~~~l~~~i~~l~~~~~~~~~~~~~~~~e~ 240 (589)
T Consensus 229 -------------------------------------------------------------------------------- 228 (373)
T smart00268 229 -------------------------------------------------------------------------------- 228 (373)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhhhcccCCCCCCccCCCccCCHHHHHHHHHhhhhccChHHHHHHHHHHHHHHHHHHHHhHHHHHHhhcChHHHHHHHHH
Q 007811 241 EKTDASMNEKYPLIHIPDNMLSLEQLKEKRRQIFLKTTTEGRQRAKQKRVEEELEQEKKNQEEEERRLENPELYVEQMRA 320 (589)
Q Consensus 241 ~~~~~~~~~~~~Ll~~pd~~l~~~~~keKr~q~~lk~~~~ar~~~k~~~~~ek~~~~~~~~~~e~~~~~~~~~~~~~~r~ 320 (589)
.
T Consensus 229 ----------~--------------------------------------------------------------------- 229 (373)
T smart00268 229 ----------S--------------------------------------------------------------------- 229 (373)
T ss_pred ----------c---------------------------------------------------------------------
Confidence 0
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCcccccHHHHHHHHHhhhhhhccCCCCCCCCCCchhhHHHHHhhcCCC
Q 007811 321 KYKELSEKIDQRKRLKTNGNHTNGNNTSGGVGRGERLNAAQRERMRLLTTAAFDRGKGEDTFGAKDEDWQLYKLMSRDND 400 (589)
Q Consensus 321 ~~~~i~~~~~~r~~~~~~l~~~~~~~~~~~~~~~~r~s~a~~~rm~~i~~~~~~~~~~~d~fg~~d~dw~vy~~i~~~~~ 400 (589)
.+
T Consensus 230 ------------------~~------------------------------------------------------------ 231 (373)
T smart00268 230 ------------------ES------------------------------------------------------------ 231 (373)
T ss_pred ------------------cc------------------------------------------------------------
Confidence 00
Q ss_pred CCchhhhHHHHHHHHHHHhhhhcCCCCCCCCCCCCCCccCCCCccccCCCCCeEEEeCceeccccccCcCCCCCCCCCCC
Q 007811 401 DDDEEMDENEAELARISARLQEVDPTFVPKQESGPTQSAAEIPRVRPLTKEDFQIVLGVERFRCPEILFRPNWVGIDQVG 480 (589)
Q Consensus 401 ~~~~d~e~~~~~l~~le~~L~~~Dp~F~~~~~~~~~~~~~~~~~~y~lp~~~~~I~lg~ERf~~pE~LF~Psl~g~~~~G 480 (589)
...+..|++|++ ..+.++.|||.|||+||+|+++|.+..|
T Consensus 232 ---------------------------------------~~~~~~~~lpdg-~~~~~~~er~~~~E~lf~p~~~~~~~~~ 271 (373)
T smart00268 232 ---------------------------------------SKLEKTYELPDG-NTIKVGNERFRIPEILFKPELIGLEQKG 271 (373)
T ss_pred ---------------------------------------cccceeEECCCC-CEEEEChHHeeCchhcCCchhcCCCcCC
Confidence 001234677888 8899999999999999999999999999
Q ss_pred cchhHHHHhhcCCCCChhhhHhhcCCeEEecCCCCCCChHHHHHHHHHhhcCCCCCeEEEeCCCCccceeechhhhcccC
Q 007811 481 LDEMTGVSIRRLPTKDEDLEQRLTSSILMTGGCCLFPGMSERLEAGIRMIRPCGAPIKVVRALDPVLDAWRGASVYATKL 560 (589)
Q Consensus 481 L~e~I~~sI~~~~~c~~d~r~~L~~NIvLtGG~S~~~Gf~eRL~~EL~~l~p~~~~v~V~~~~d~~~~aW~Ggsilasl~ 560 (589)
|+++|.++|. +||+|+|+.|++|||||||+|++|||.+||++||..+.|...+++|..+++|.+++|+|||++|+++
T Consensus 272 i~~~i~~~i~---~~~~d~r~~l~~nIvltGG~s~i~Gl~~RL~~el~~~~p~~~~v~v~~~~~~~~~~W~G~silas~~ 348 (373)
T smart00268 272 IHELVYESIQ---KCDIDVRKDLYENIVLSGGSTLIPGFGERLEKELKQLAPKKLKVKVIAPPERKYSVWLGGSILASLS 348 (373)
T ss_pred HHHHHHHHHH---hCCHhHHHHHHhCeEeecccccCcCHHHHHHHHHHHhCCCCceeEEecCCCCccceEeCcccccCcc
Confidence 9999999996 5799999999999999999999999999999999999998888999999999999999999999999
Q ss_pred CCCccceeHHHHhhhchHHHHHhhc
Q 007811 561 QFPQQTFSRMDYYEKGENWLRRYQL 585 (589)
Q Consensus 561 ~f~~~wITk~EY~E~G~~iv~~k~~ 585 (589)
+|+.+||||+||+|+|++++++|||
T Consensus 349 ~f~~~~vtk~eY~E~G~~i~~~k~~ 373 (373)
T smart00268 349 TFEDMWITKKEYEEHGSQIVERKCF 373 (373)
T ss_pred chhhhEEEHHHHhhhCcceEEeecC
Confidence 9999999999999999999999997
No 11
>KOG0680 consensus Actin-related protein - Arp6p [Cytoskeleton]
Probab=100.00 E-value=9.7e-49 Score=395.59 Aligned_cols=283 Identities=28% Similarity=0.447 Sum_probs=238.1
Q ss_pred ChhhhhhhcCCCeEeeehhHHHhhhhhc---cCC-C--CCCcceeeeCCCcceEEEeecCCccccccceecccccchhHH
Q 007811 1 MAELLFETYGVPSVAFGVDAAFSYKYNQ---QYG-I--CNKDGLAICPGFSTTHVIPFVEGEPVYRGSCRTNIGGYHITD 74 (589)
Q Consensus 1 m~EiLFE~f~vPsv~~~~qsvLSlya~g---~~~-~--~~~tGLVVD~G~~~T~VvPV~eG~~l~~a~~rl~~GG~~lt~ 74 (589)
+.|+|||-|+|-+++-...++|+.+..- ..+ . ...++||||+|++.|||+||+.|.+...+++|+++||+.+|.
T Consensus 112 t~eilFEey~fd~v~kttaa~lva~~~~~~~ne~~tt~~~~c~lVIDsGysfThIip~v~g~~~~qaV~RiDvGGK~LTn 191 (400)
T KOG0680|consen 112 TDEILFEEYQFDAVLKTTAAVLVAFTKYVRNNEDSTTTSSECCLVIDSGYSFTHIIPVVKGIPYYQAVKRIDVGGKALTN 191 (400)
T ss_pred HHHHHHHHhccceEeecCHHHhcchhhhccCCccccccccceEEEEeCCCceEEEehhhcCcchhhceEEeecchHHHHH
Confidence 4699999999999999999999988731 111 0 124799999999999999999999999999999999999999
Q ss_pred HHHHhhhccCCCCCCCCCHHHHHHHHhcccccccChHHHHHHHhcCcccccccceeeeCCCCCCCCCCCCCHHHHHHHHH
Q 007811 75 YLKQLLSLKHPQHMTKLTWEKVEDLKMEHCYIAPDYFSEAQLFQKGTKEAEHKTRCWQLPWVPPPTEEPPSEEEIARKAA 154 (589)
Q Consensus 75 ~L~~lL~~k~~~~~~~~~~~~v~~IKE~~CyVa~Dy~~El~~~~~~~~~~~~~~~~~qlP~~~~~~~~~~t~eel~~~~~ 154 (589)
+|+.+++.|..+++. +..+|++|||.+||||+||.+.|..+... ..-+.....|-||+-.
T Consensus 192 ~LKE~iSyR~lNvmd--ET~vVNeiKEdvcfVSqnF~~~m~~~~~k-~~~~~~~i~YvLPDF~----------------- 251 (400)
T KOG0680|consen 192 LLKETISYRHLNVMD--ETYVVNEIKEDVCFVSQNFKEDMDIAKTK-FQENKVMIDYVLPDFS----------------- 251 (400)
T ss_pred HHHHHhhhhhhcccc--hhhhhhhhhhheEEechhhHHHHHHHhhc-cccceeEEEEecCCcc-----------------
Confidence 999999999888863 67899999999999999999998776541 0111222334444442
Q ss_pred HHHHHhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhhcHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHHhhhcch
Q 007811 155 IKERQGQRLREMAEAKRSSRINELENQIHGLEFLLQQLEQVEENDIAAFLSDTGYVSRQEIESTLVKLTQSLRKAKGERK 234 (589)
Q Consensus 155 rr~~~~~RLqe~~~~~r~ekl~~~e~~l~~~~~l~~~~~~~~~~~~~~~L~~~g~~~~~~l~~~i~~l~~~~~~~~~~~~ 234 (589)
T Consensus 252 -------------------------------------------------------------------------------- 251 (400)
T KOG0680|consen 252 -------------------------------------------------------------------------------- 251 (400)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhhhhhhhhhcccCCCCCCccCCCccCCHHHHHHHHHhhhhccChHHHHHHHHHHHHHHHHHHHHhHHHHHHhhcChHHH
Q 007811 235 VEQAELEKTDASMNEKYPLIHIPDNMLSLEQLKEKRRQIFLKTTTEGRQRAKQKRVEEELEQEKKNQEEEERRLENPELY 314 (589)
Q Consensus 235 ~~~~e~~~~~~~~~~~~~Ll~~pd~~l~~~~~keKr~q~~lk~~~~ar~~~k~~~~~ek~~~~~~~~~~e~~~~~~~~~~ 314 (589)
T Consensus 252 -------------------------------------------------------------------------------- 251 (400)
T KOG0680|consen 252 -------------------------------------------------------------------------------- 251 (400)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCcccccHHHHHHHHHhhhhhhccCCCCCCCCCCchhhHHHHH
Q 007811 315 VEQMRAKYKELSEKIDQRKRLKTNGNHTNGNNTSGGVGRGERLNAAQRERMRLLTTAAFDRGKGEDTFGAKDEDWQLYKL 394 (589)
Q Consensus 315 ~~~~r~~~~~i~~~~~~r~~~~~~l~~~~~~~~~~~~~~~~r~s~a~~~rm~~i~~~~~~~~~~~d~fg~~d~dw~vy~~ 394 (589)
T Consensus 252 -------------------------------------------------------------------------------- 251 (400)
T KOG0680|consen 252 -------------------------------------------------------------------------------- 251 (400)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhcCCCCCchhhhHHHHHHHHHHHhhhhcCCCCCCCCCCCCCCccCCCCccccCCCCCeEEEeCceeccccccCcCCCCC
Q 007811 395 MSRDNDDDDEEMDENEAELARISARLQEVDPTFVPKQESGPTQSAAEIPRVRPLTKEDFQIVLGVERFRCPEILFRPNWV 474 (589)
Q Consensus 395 i~~~~~~~~~d~e~~~~~l~~le~~L~~~Dp~F~~~~~~~~~~~~~~~~~~y~lp~~~~~I~lg~ERf~~pE~LF~Psl~ 474 (589)
... -|..+ +.+-.+|.+.+.|+|++|||.+||+||+|+.+
T Consensus 252 ----------------------------------T~k---~Gyvr---~~~vk~~~d~qii~L~nErF~IPEilF~Psdi 291 (400)
T KOG0680|consen 252 ----------------------------------TSK---RGYVR---NEDVKLPEDEQIITLTNERFTIPEILFSPSDI 291 (400)
T ss_pred ----------------------------------ccc---ceeEe---cCCCCCCCCcceeeecccccccchhhcChhhc
Confidence 110 00000 00111233338999999999999999999999
Q ss_pred CCCCCCcchhHHHHhhcCCCCChhhhHhhcCCeEEecCCCCCCChHHHHHHHHHhhcCCCCCeEEEeCCCCccceeechh
Q 007811 475 GIDQVGLDEMTGVSIRRLPTKDEDLEQRLTSSILMTGGCCLFPGMSERLEAGIRMIRPCGAPIKVVRALDPVLDAWRGAS 554 (589)
Q Consensus 475 g~~~~GL~e~I~~sI~~~~~c~~d~r~~L~~NIvLtGG~S~~~Gf~eRL~~EL~~l~p~~~~v~V~~~~d~~~~aW~Ggs 554 (589)
|+.++||+|+|..||. .||..+|+.|+.|||++||+++||||.+||..||++++|..+.++|..|.||..-+|-||+
T Consensus 292 ~I~q~GIpEAV~esl~---~~Pe~~~p~l~~NIv~iGGn~~fPgF~~RL~~Elr~l~P~d~~v~V~~p~dp~~~~W~~g~ 368 (400)
T KOG0680|consen 292 GIQQPGIPEAVLESLS---MLPEEVRPLLLENIVCIGGNSNFPGFRQRLARELRSLLPADWEVSVSVPEDPITFAWEGGS 368 (400)
T ss_pred CcccCCchHHHHHHHH---hCHHHHHHHHHhcEEEecCccCCcchHHHHHHHHHhhCCccceEEEecCCCcceeeehhcc
Confidence 9999999999999996 5799999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcccCCCCccceeHHHHhhhchHHHHHhhcc
Q 007811 555 VYATKLQFPQQTFSRMDYYEKGENWLRRYQLQ 586 (589)
Q Consensus 555 ilasl~~f~~~wITk~EY~E~G~~iv~~k~~~ 586 (589)
-+|.+.+|..+||||+||+|+|++++.+|.|+
T Consensus 369 ~~~~~~~~~~~~itR~dy~E~G~~~~~~~~~~ 400 (400)
T KOG0680|consen 369 EFAKTDSFEKAVITREDYEEHGPSWCTKKRFI 400 (400)
T ss_pred ccccCcchhcceecHhhHhhcCchhhhhhccC
Confidence 99999999999999999999999999999874
No 12
>KOG0679 consensus Actin-related protein - Arp4p/Act3p [Cytoskeleton]
Probab=100.00 E-value=2.6e-48 Score=400.68 Aligned_cols=138 Identities=29% Similarity=0.498 Sum_probs=128.4
Q ss_pred CCccccCCCCCeEEEeCceeccccccCcCCCCCC------------CCCCCcchhHHHHhhcCCCCChhhhHhhcCCeEE
Q 007811 442 IPRVRPLTKEDFQIVLGVERFRCPEILFRPNWVG------------IDQVGLDEMTGVSIRRLPTKDEDLEQRLTSSILM 509 (589)
Q Consensus 442 ~~~~y~lp~~~~~I~lg~ERf~~pE~LF~Psl~g------------~~~~GL~e~I~~sI~~~~~c~~d~r~~L~~NIvL 509 (589)
++.+|++|++ ++..+|.|||++||.||+|+++- ....|+++++..||. .||+|+|..||+||||
T Consensus 272 ~~~~~efP~g-~~~~~G~er~ripe~lF~Ps~v~~~s~~~~~~~~~n~~lG~~~lv~sSi~---~cDvdiR~~L~~nViv 347 (426)
T KOG0679|consen 272 PTKHFEFPDG-YTLDFGAERFRIPEYLFKPSLVKSSSKEAGATSHINTMLGLPHLVYSSIN---MCDVDIRSSLLGNVIV 347 (426)
T ss_pred CCccccCCCC-cccccCcceeecchhhcCcchhccccccccCCCCCccccCchHHHHhhhc---cChHHHHHHhhccEEE
Confidence 5789999999 79999999999999999999862 223699999999995 6899999999999999
Q ss_pred ecCCCCCCChHHHHHHHHHhhcCCCCCeEEEeCC---CCccceeechhhhcccCCCCccceeHHHHhhhch-HHHHHhh
Q 007811 510 TGGCCLFPGMSERLEAGIRMIRPCGAPIKVVRAL---DPVLDAWRGASVYATKLQFPQQTFSRMDYYEKGE-NWLRRYQ 584 (589)
Q Consensus 510 tGG~S~~~Gf~eRL~~EL~~l~p~~~~v~V~~~~---d~~~~aW~Ggsilasl~~f~~~wITk~EY~E~G~-~iv~~k~ 584 (589)
|||+|+++||.+||.+||..++|.+ +++|+++. +|+|++|+||||||||++|+++||||+||+|.|. ..+.++|
T Consensus 348 tGGtSliqG~s~RL~~ELs~~~P~s-rlki~as~~t~eR~~~~WlGGSILASLgtFqq~WiSKqEYEE~G~d~~ve~rc 425 (426)
T KOG0679|consen 348 TGGTSLIQGFSERLNKELSKRAPSS-RLKIIASGHTVERRFQSWLGGSILASLGTFQQLWISKQEYEEVGKDQLVERRC 425 (426)
T ss_pred ecCcchhhhHHHHHHHHHHHhCCcc-eEEEEecCceeeehhhhhhhhHHHhccccHHHHhhhHHHHHHhhhHHHHhhcC
Confidence 9999999999999999999999987 99999875 7999999999999999999999999999999999 8888887
No 13
>COG5277 Actin and related proteins [Cytoskeleton]
Probab=100.00 E-value=3.2e-48 Score=420.62 Aligned_cols=137 Identities=36% Similarity=0.628 Sum_probs=129.1
Q ss_pred cccCCCCCeEEEeCce-eccccccCcCCC--CCCCCCCC---------------------------cchhHHHHhhcCCC
Q 007811 445 VRPLTKEDFQIVLGVE-RFRCPEILFRPN--WVGIDQVG---------------------------LDEMTGVSIRRLPT 494 (589)
Q Consensus 445 ~y~lp~~~~~I~lg~E-Rf~~pE~LF~Ps--l~g~~~~G---------------------------L~e~I~~sI~~~~~ 494 (589)
.+++|++ ..|.++.| ||++||.||+|. ..+.+..| |+++|.++|. .
T Consensus 278 ~~~~p~~-~~i~~~~e~rf~~pE~lF~pe~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~e~v~~si~---~ 353 (444)
T COG5277 278 SKELPDG-EEIEFGNEERFKAPEILFKPELPISGLEEAGKIDESKQELVAENYEISPTNLGNDIAGLPELVYQSIQ---I 353 (444)
T ss_pred cccCCCC-ceEeechhhhhhcchhhcCCccccccccccccchhhhhhhhhhccccccccccccccchHHHHHHHHH---h
Confidence 3456777 99999999 999999999999 87777766 9999999995 6
Q ss_pred CChhhhHhhcCCeEEecCCCCCCChHHHHHHHHHhhcCCCCCeEEEeCCCCccceeechhhhcccCCCCccceeHHHHhh
Q 007811 495 KDEDLEQRLTSSILMTGGCCLFPGMSERLEAGIRMIRPCGAPIKVVRALDPVLDAWRGASVYATKLQFPQQTFSRMDYYE 574 (589)
Q Consensus 495 c~~d~r~~L~~NIvLtGG~S~~~Gf~eRL~~EL~~l~p~~~~v~V~~~~d~~~~aW~Ggsilasl~~f~~~wITk~EY~E 574 (589)
||.+.|+.||+|||||||+|++|||.+||++||..+.|....|.|+.+++|.+.+|+|||+||++++|.++||||+||+|
T Consensus 354 ~~~~~r~~l~~nivitGGts~~pg~~~Rl~~el~~~~p~~~~v~v~~~~~~~~~~W~GaSila~~~~~~~~~itk~eY~e 433 (444)
T COG5277 354 CDEDVRKSLYSNIVLTGGTSKIPGFAERLQKELTSLAPSIWKVSVIPPPDPSLDAWLGASILASLETFQQLWITKEEYEE 433 (444)
T ss_pred ccHHHHHHHhhCEEEecCccCCCCHHHHHHHHHHhhcCCCCceeeecCCchhhccccchhhhccccchhheEeeHHHhhh
Confidence 79999999999999999999999999999999999999989999999999999999999999999999999999999999
Q ss_pred hchHHHHHhhc
Q 007811 575 KGENWLRRYQL 585 (589)
Q Consensus 575 ~G~~iv~~k~~ 585 (589)
+|++++++|||
T Consensus 434 ~G~~~~~~~~~ 444 (444)
T COG5277 434 HGPDILQEKRF 444 (444)
T ss_pred hhhHHHhhccC
Confidence 99999999986
No 14
>cd00012 ACTIN Actin; An ubiquitous protein involved in the formation of filaments that are a major component of the cytoskeleton. Interaction with myosin provides the basis of muscular contraction and many aspects of cell motility. Each actin protomer binds one molecule of ATP and either calcium or magnesium ions. Actin exists as a monomer in low salt concentrations, but filaments form rapidly as salt concentration rises, with the consequent hydrolysis of ATP. Polymerization is regulated by so-called capping proteins. The ATPase domain of actin shares similarity with ATPase domains of hexokinase and hsp70 proteins.
Probab=100.00 E-value=6.5e-48 Score=411.03 Aligned_cols=256 Identities=32% Similarity=0.514 Sum_probs=228.7
Q ss_pred ChhhhhhhcCCCeEeeehhHHHhhhhhccCCCCCCcceeeeCCCcceEEEeecCCccccccceecccccchhHHHHHHhh
Q 007811 1 MAELLFETYGVPSVAFGVDAAFSYKYNQQYGICNKDGLAICPGFSTTHVIPFVEGEPVYRGSCRTNIGGYHITDYLKQLL 80 (589)
Q Consensus 1 m~EiLFE~f~vPsv~~~~qsvLSlya~g~~~~~~~tGLVVD~G~~~T~VvPV~eG~~l~~a~~rl~~GG~~lt~~L~~lL 80 (589)
++|+|||.|++|+|++++++++|+|++| .++|||||+|++.|+|+||++|+++.+++.++++||.+++++|.++|
T Consensus 114 ~~e~lfe~~~~~~v~~~~~~~~a~~~~g-----~~~~lVVDiG~~~t~i~pv~~G~~~~~~~~~~~~GG~~l~~~l~~~l 188 (371)
T cd00012 114 TTEIMFETFNVPALYVAIQAVLSLYASG-----RTTGLVVDSGDGVTHVVPVYDGYVLPHAIKRLDLAGRDLTRYLKELL 188 (371)
T ss_pred HHHHhhccCCCCEEEEechHHHHHHhcC-----CCeEEEEECCCCeeEEEEEECCEEchhhheeccccHHHHHHHHHHHH
Confidence 4799999999999999999999999999 89999999999999999999999999999999999999999999999
Q ss_pred hccCCCCCCCCCHHHHHHHHhcccccccChHHHHHHHhcCcccccccceeeeCCCCCCCCCCCCCHHHHHHHHHHHHHHh
Q 007811 81 SLKHPQHMTKLTWEKVEDLKMEHCYIAPDYFSEAQLFQKGTKEAEHKTRCWQLPWVPPPTEEPPSEEEIARKAAIKERQG 160 (589)
Q Consensus 81 ~~k~~~~~~~~~~~~v~~IKE~~CyVa~Dy~~El~~~~~~~~~~~~~~~~~qlP~~~~~~~~~~t~eel~~~~~rr~~~~ 160 (589)
..+++.+.......++++||+++|||+.++..++.....
T Consensus 189 ~~~~~~~~~~~~~~~~~~iKe~~~~v~~~~~~~~~~~~~----------------------------------------- 227 (371)
T cd00012 189 RERGYELNSSDEREIVRDIKEKLCYVALDIEEEQDKSAK----------------------------------------- 227 (371)
T ss_pred HhcCCCccchhHHHHHHHHHHhheeecCCHHHHHHhhhc-----------------------------------------
Confidence 998876666778899999999999999876544311000
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhhcHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHHhhhcchhhhhhh
Q 007811 161 QRLREMAEAKRSSRINELENQIHGLEFLLQQLEQVEENDIAAFLSDTGYVSRQEIESTLVKLTQSLRKAKGERKVEQAEL 240 (589)
Q Consensus 161 ~RLqe~~~~~r~ekl~~~e~~l~~~~~l~~~~~~~~~~~~~~~L~~~g~~~~~~l~~~i~~l~~~~~~~~~~~~~~~~e~ 240 (589)
T Consensus 228 -------------------------------------------------------------------------------- 227 (371)
T cd00012 228 -------------------------------------------------------------------------------- 227 (371)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhhhcccCCCCCCccCCCccCCHHHHHHHHHhhhhccChHHHHHHHHHHHHHHHHHHHHhHHHHHHhhcChHHHHHHHHH
Q 007811 241 EKTDASMNEKYPLIHIPDNMLSLEQLKEKRRQIFLKTTTEGRQRAKQKRVEEELEQEKKNQEEEERRLENPELYVEQMRA 320 (589)
Q Consensus 241 ~~~~~~~~~~~~Ll~~pd~~l~~~~~keKr~q~~lk~~~~ar~~~k~~~~~ek~~~~~~~~~~e~~~~~~~~~~~~~~r~ 320 (589)
+
T Consensus 228 -----------~-------------------------------------------------------------------- 228 (371)
T cd00012 228 -----------E-------------------------------------------------------------------- 228 (371)
T ss_pred -----------c--------------------------------------------------------------------
Confidence 0
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCcccccHHHHHHHHHhhhhhhccCCCCCCCCCCchhhHHHHHhhcCCC
Q 007811 321 KYKELSEKIDQRKRLKTNGNHTNGNNTSGGVGRGERLNAAQRERMRLLTTAAFDRGKGEDTFGAKDEDWQLYKLMSRDND 400 (589)
Q Consensus 321 ~~~~i~~~~~~r~~~~~~l~~~~~~~~~~~~~~~~r~s~a~~~rm~~i~~~~~~~~~~~d~fg~~d~dw~vy~~i~~~~~ 400 (589)
. +
T Consensus 229 ------------------~------------------------------------------------------------~ 230 (371)
T cd00012 229 ------------------T------------------------------------------------------------S 230 (371)
T ss_pred ------------------C------------------------------------------------------------C
Confidence 0 0
Q ss_pred CCchhhhHHHHHHHHHHHhhhhcCCCCCCCCCCCCCCccCCCCccccCCCCCeEEEeCceeccccccCcCCCCCCCCCCC
Q 007811 401 DDDEEMDENEAELARISARLQEVDPTFVPKQESGPTQSAAEIPRVRPLTKEDFQIVLGVERFRCPEILFRPNWVGIDQVG 480 (589)
Q Consensus 401 ~~~~d~e~~~~~l~~le~~L~~~Dp~F~~~~~~~~~~~~~~~~~~y~lp~~~~~I~lg~ERf~~pE~LF~Psl~g~~~~G 480 (589)
.....|.+|++ +.|.++.|||.+||+||+|+++|....|
T Consensus 231 ----------------------------------------~~~~~~~lpd~-~~i~~~~er~~~~E~lF~p~~~~~~~~~ 269 (371)
T cd00012 231 ----------------------------------------LLEKTYELPDG-RTIKVGNERFRAPEILFNPSLIGSEQVG 269 (371)
T ss_pred ----------------------------------------ccceeEECCCC-eEEEEChHHhhChHhcCChhhcCCCcCC
Confidence 00123566777 8999999999999999999999999999
Q ss_pred cchhHHHHhhcCCCCChhhhHhhcCCeEEecCCCCCCChHHHHHHHHHhhcCC--CCCeEEEeCCCCccceeechhhhcc
Q 007811 481 LDEMTGVSIRRLPTKDEDLEQRLTSSILMTGGCCLFPGMSERLEAGIRMIRPC--GAPIKVVRALDPVLDAWRGASVYAT 558 (589)
Q Consensus 481 L~e~I~~sI~~~~~c~~d~r~~L~~NIvLtGG~S~~~Gf~eRL~~EL~~l~p~--~~~v~V~~~~d~~~~aW~Ggsilas 558 (589)
|+++|..+|. .||+++|+.+++||+||||+|++|||.+||++||..+.|. ...++|..+++|.+++|+|||+||+
T Consensus 270 i~~~i~~~i~---~~~~~~~~~l~~~Ivl~GG~s~~~gl~~rl~~el~~~~~~~~~~~~~~~~~~~~~~~aw~G~si~as 346 (371)
T cd00012 270 ISEAIYSSIN---KCDIDLRKDLYSNIVLSGGSTLFPGFGERLQKELLKLAPPSKDTKVKVIAPPERKYSVWLGGSILAS 346 (371)
T ss_pred HHHHHHHHHH---hCCHhHHHHHHhCEEEeCCccCCcCHHHHHHHHHHHhCCcccceEEEEccCCCccccEEeCchhhcC
Confidence 9999999996 5799999999999999999999999999999999999997 5567788888999999999999999
Q ss_pred cCCCCccceeHHHHhhhchHHHHHh
Q 007811 559 KLQFPQQTFSRMDYYEKGENWLRRY 583 (589)
Q Consensus 559 l~~f~~~wITk~EY~E~G~~iv~~k 583 (589)
+++|+++||||+||+|+|++++++|
T Consensus 347 ~~~~~~~~itk~eY~E~G~~~~~~k 371 (371)
T cd00012 347 LSTFQQLWITKEEYEEHGPSIVHRK 371 (371)
T ss_pred chhhhheEeeHHHHhhhCchhEecC
Confidence 9999999999999999999999875
No 15
>KOG0678 consensus Actin-related protein Arp2/3 complex, subunit Arp3 [Cytoskeleton]
Probab=100.00 E-value=1.1e-39 Score=330.51 Aligned_cols=270 Identities=26% Similarity=0.414 Sum_probs=225.9
Q ss_pred ChhhhhhhcCCCeEeeehhHHHhhhhhccC-C--CCCCcceeeeCCCcceEEEeecCCccccccceecccccchhHHHHH
Q 007811 1 MAELLFETYGVPSVAFGVDAAFSYKYNQQY-G--ICNKDGLAICPGFSTTHVIPFVEGEPVYRGSCRTNIGGYHITDYLK 77 (589)
Q Consensus 1 m~EiLFE~f~vPsv~~~~qsvLSlya~g~~-~--~~~~tGLVVD~G~~~T~VvPV~eG~~l~~a~~rl~~GG~~lt~~L~ 77 (589)
++|+|||.||||.+|+++|+||+|-++-.. . ....||+|||+|.|+|||+||.+||++..+++.++++|+++|-+.+
T Consensus 125 taeImfEsfnvpglyiAVqavLALaaswts~~v~er~ltG~VidsGdgvThvipvaEgyVigScik~iPiagrdiT~fiQ 204 (415)
T KOG0678|consen 125 TAEIMFESFNVPGLYIAVQAVLALAASWTSRQVGERFLTGIVIDSGDGVTHVIPVAEGYVIGSCIKHIPIAGRDITYFIQ 204 (415)
T ss_pred HHHhhhhhccCchHHHHHHHHHHHHHHHHHhhhhhheeeeEEEecCCCeeEEEEeecceEEeeeeccccccCCchhHHHH
Confidence 479999999999999999999999888521 1 1246999999999999999999999999999999999999999999
Q ss_pred HhhhccCCCCCCCCCHHHHHHHHhcccccccChHHHHHHHhcCcccccccceeeeCCCCCCCCCCCCCHHHHHHHHHHHH
Q 007811 78 QLLSLKHPQHMTKLTWEKVEDLKMEHCYIAPDYFSEAQLFQKGTKEAEHKTRCWQLPWVPPPTEEPPSEEEIARKAAIKE 157 (589)
Q Consensus 78 ~lL~~k~~~~~~~~~~~~v~~IKE~~CyVa~Dy~~El~~~~~~~~~~~~~~~~~qlP~~~~~~~~~~t~eel~~~~~rr~ 157 (589)
.||.++++..+.....+++..||+++||+.+|+..|...+..+
T Consensus 205 ~llRer~~~iP~e~sl~tak~iKe~ycy~cPdivkef~k~d~e------------------------------------- 247 (415)
T KOG0678|consen 205 QLLREREVGIPPEQSLETAKAIKEKYCYTCPDIVKEFAKYDRE------------------------------------- 247 (415)
T ss_pred HHhhCCCCCCChHHhhhhhHHHHhhhcccCcHHHHHHHHhccC-------------------------------------
Confidence 9999999988888899999999999999999999998776431
Q ss_pred HHhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhhcHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHHhhhcchhhh
Q 007811 158 RQGQRLREMAEAKRSSRINELENQIHGLEFLLQQLEQVEENDIAAFLSDTGYVSRQEIESTLVKLTQSLRKAKGERKVEQ 237 (589)
Q Consensus 158 ~~~~RLqe~~~~~r~ekl~~~e~~l~~~~~l~~~~~~~~~~~~~~~L~~~g~~~~~~l~~~i~~l~~~~~~~~~~~~~~~ 237 (589)
T Consensus 248 -------------------------------------------------------------------------------- 247 (415)
T KOG0678|consen 248 -------------------------------------------------------------------------------- 247 (415)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhhhhhhcccCCCCCCccCCCccCCHHHHHHHHHhhhhccChHHHHHHHHHHHHHHHHHHHHhHHHHHHhhcChHHHHHH
Q 007811 238 AELEKTDASMNEKYPLIHIPDNMLSLEQLKEKRRQIFLKTTTEGRQRAKQKRVEEELEQEKKNQEEEERRLENPELYVEQ 317 (589)
Q Consensus 238 ~e~~~~~~~~~~~~~Ll~~pd~~l~~~~~keKr~q~~lk~~~~ar~~~k~~~~~ek~~~~~~~~~~e~~~~~~~~~~~~~ 317 (589)
+..|++.
T Consensus 248 -------------------------------------------------------------------------p~K~ikq 254 (415)
T KOG0678|consen 248 -------------------------------------------------------------------------PAKWIKQ 254 (415)
T ss_pred -------------------------------------------------------------------------HHHHHHH
Confidence 1111110
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCcccccHHHHHHHHHhhhhhhccCCCCCCCCCCchhhHHHHHhhc
Q 007811 318 MRAKYKELSEKIDQRKRLKTNGNHTNGNNTSGGVGRGERLNAAQRERMRLLTTAAFDRGKGEDTFGAKDEDWQLYKLMSR 397 (589)
Q Consensus 318 ~r~~~~~i~~~~~~r~~~~~~l~~~~~~~~~~~~~~~~r~s~a~~~rm~~i~~~~~~~~~~~d~fg~~d~dw~vy~~i~~ 397 (589)
-. .++ .
T Consensus 255 ~~------------------~~~-----------------------------------------------------~--- 260 (415)
T KOG0678|consen 255 YT------------------GIN-----------------------------------------------------V--- 260 (415)
T ss_pred Hh------------------ccc-----------------------------------------------------h---
Confidence 00 000 0
Q ss_pred CCCCCchhhhHHHHHHHHHHHhhhhcCCCCCCCCCCCCCCccCCCCccccCCCCCeEEEeCceeccccccCcCCCCCCCC
Q 007811 398 DNDDDDEEMDENEAELARISARLQEVDPTFVPKQESGPTQSAAEIPRVRPLTKEDFQIVLGVERFRCPEILFRPNWVGID 477 (589)
Q Consensus 398 ~~~~~~~d~e~~~~~l~~le~~L~~~Dp~F~~~~~~~~~~~~~~~~~~y~lp~~~~~I~lg~ERf~~pE~LF~Psl~g~~ 477 (589)
+.+....|.+|.|||..||+||+|.+...+
T Consensus 261 --------------------------------------------------i~~~~~~vDvgyerFlgpEiff~Pe~a~~d 290 (415)
T KOG0678|consen 261 --------------------------------------------------ITGKKFVVDVGYERFLGPEIFFHPEFANPD 290 (415)
T ss_pred --------------------------------------------------hcCCceeecccHHhhcChhhhcCccccCCc
Confidence 011127888999999999999999998777
Q ss_pred C-CCcchhHHHHhhcCCCCChhhhHhhcCCeEEecCCCCCCChHHHHHHHHHhhc--------------CCCCCeEEEeC
Q 007811 478 Q-VGLDEMTGVSIRRLPTKDEDLEQRLTSSILMTGGCCLFPGMSERLEAGIRMIR--------------PCGAPIKVVRA 542 (589)
Q Consensus 478 ~-~GL~e~I~~sI~~~~~c~~d~r~~L~~NIvLtGG~S~~~Gf~eRL~~EL~~l~--------------p~~~~v~V~~~ 542 (589)
. ..|+++|...|+ .||+|+|+-||+||+|+||+++|.+|..|++.++..++ |....|+|+..
T Consensus 291 ~~~~~~~~vd~~Iq---~~pIdvrr~ly~nivlsggst~fk~fgr~lqrD~kr~vd~rl~~s~~lsg~k~~~vdvqvish 367 (415)
T KOG0678|consen 291 FLTPLSEVVDWVIQ---HCPIDVRRPLYKNIVLSGGSTMFKDFGRRLQRDLKRLVDTRLAESEGLSGIKSKPVDVQVLSH 367 (415)
T ss_pred cCcchHHHhhhhhh---hCCcccchhhhhHHhhccchHHHHHhhhhccHHHHHHHHHHHHHhcccccCCCCCceeehhhh
Confidence 5 579999999995 67999999999999999999999999999999988664 22334677776
Q ss_pred CCCccceeechhhhcccCCCCccceeHHHHhhhchHHHHHhh-ccc
Q 007811 543 LDPVLDAWRGASVYATKLQFPQQTFSRMDYYEKGENWLRRYQ-LQY 587 (589)
Q Consensus 543 ~d~~~~aW~Ggsilasl~~f~~~wITk~EY~E~G~~iv~~k~-~~~ 587 (589)
.-.++++|.|||+|||.+.|-..+-||++|+|+|++|++... ||+
T Consensus 368 ~~qr~avwfggs~lastpef~~~~~tk~~yee~g~si~r~~~~f~~ 413 (415)
T KOG0678|consen 368 LLQRTAVWFGGSKLASTPEFVPACHTKEDYEEYGPSICRTNPVFGV 413 (415)
T ss_pred hhhhcceeccCccccCCcccccccCcchhhhhhChhhhhcCchhcc
Confidence 667899999999999999999999999999999999998753 443
No 16
>KOG0797 consensus Actin-related protein [Cytoskeleton]
Probab=99.88 E-value=3.9e-22 Score=212.40 Aligned_cols=111 Identities=15% Similarity=0.160 Sum_probs=96.8
Q ss_pred hhhhhhhcCCCeEeeehhHHHhhhhhccCCCCCCcceeeeCCCcceEEEeecCCccccccceecccccchhHHHHHHhhh
Q 007811 2 AELLFETYGVPSVAFGVDAAFSYKYNQQYGICNKDGLAICPGFSTTHVIPFVEGEPVYRGSCRTNIGGYHITDYLKQLLS 81 (589)
Q Consensus 2 ~EiLFE~f~vPsv~~~~qsvLSlya~g~~~~~~~tGLVVD~G~~~T~VvPV~eG~~l~~a~~rl~~GG~~lt~~L~~lL~ 81 (589)
.-+||-.++|.++.+...+|.+.|++| .++++|||+|...|+|++|-+|.+++++-.++++||.+||..|..+|.
T Consensus 247 l~ilL~eL~F~~~~v~QESlaatfGaG-----lss~CVVdiGAQkTsIaCVEdGvs~~ntri~L~YGGdDitr~f~~ll~ 321 (618)
T KOG0797|consen 247 LTILLGELGFNSAVVHQESLAATFGAG-----LSSACVVDIGAQKTSIACVEDGVSLPNTRIILPYGGDDITRCFLWLLR 321 (618)
T ss_pred HHHHHHHhccceEEEEhhhhHHHhcCC-----ccceeEEEccCcceeEEEeecCccccCceEEeccCCchHHHHHHHHHH
Confidence 457888899999999999999999999 889999999999999999999999999999999999999999999987
Q ss_pred ccCC-----CCCCCCCHHHHHHHHhcccccccC-hHHHHHHH
Q 007811 82 LKHP-----QHMTKLTWEKVEDLKMEHCYIAPD-YFSEAQLF 117 (589)
Q Consensus 82 ~k~~-----~~~~~~~~~~v~~IKE~~CyVa~D-y~~El~~~ 117 (589)
..+. .+.+..++.+++++|+++|.+..+ +.-.+..|
T Consensus 322 rs~FPy~d~~v~~~~d~lLl~~LKe~Fc~l~~a~~~vQ~~~F 363 (618)
T KOG0797|consen 322 RSGFPYQDCDVLAPIDWLLLNQLKEKFCHLRAAELGVQLTVF 363 (618)
T ss_pred hcCCCcccccccccccHHHHHHHHHHhccccHhhhhhhhhhh
Confidence 7543 345678999999999999999753 33344433
No 17
>PRK13930 rod shape-determining protein MreB; Provisional
Probab=99.71 E-value=4.7e-18 Score=178.93 Aligned_cols=103 Identities=17% Similarity=0.052 Sum_probs=85.1
Q ss_pred hhhhhhhcCCCeEeeehhHHHhhhhhccCCCCCCcceeeeCCCcceEEEeecCCccccccceecccccchhHHHHHHhhh
Q 007811 2 AELLFETYGVPSVAFGVDAAFSYKYNQQYGICNKDGLAICPGFSTTHVIPFVEGEPVYRGSCRTNIGGYHITDYLKQLLS 81 (589)
Q Consensus 2 ~EiLFE~f~vPsv~~~~qsvLSlya~g~~~~~~~tGLVVD~G~~~T~VvPV~eG~~l~~a~~rl~~GG~~lt~~L~~lL~ 81 (589)
+..+||.+++|.+++.+++++|+|++|.......+++|||+|+++|+|+||..|.++. ...+++||.++|++|.++|.
T Consensus 119 ~~~~~e~~g~~~~~lv~ep~AAa~a~g~~~~~~~~~lVvDiG~gttdvs~v~~g~~~~--~~~~~lGG~~id~~l~~~l~ 196 (335)
T PRK13930 119 VREAAEHAGAREVYLIEEPMAAAIGAGLPVTEPVGNMVVDIGGGTTEVAVISLGGIVY--SESIRVAGDEMDEAIVQYVR 196 (335)
T ss_pred HHHHHHHcCCCeEEecccHHHHHHhcCCCcCCCCceEEEEeCCCeEEEEEEEeCCEEe--ecCcCchhHHHHHHHHHHHH
Confidence 3458999999999999999999999982211124689999999999999999999876 67889999999999999997
Q ss_pred ccCCCCCCCCCHHHHHHHHhcccccccC
Q 007811 82 LKHPQHMTKLTWEKVEDLKMEHCYIAPD 109 (589)
Q Consensus 82 ~k~~~~~~~~~~~~v~~IKE~~CyVa~D 109 (589)
.++. + ..+...++.+|+++||++.+
T Consensus 197 ~~~~-~--~~~~~~ae~~K~~~~~~~~~ 221 (335)
T PRK13930 197 RKYN-L--LIGERTAEEIKIEIGSAYPL 221 (335)
T ss_pred HHhC-C--CCCHHHHHHHHHHhhcCcCC
Confidence 6532 2 24567899999999999765
No 18
>TIGR00904 mreB cell shape determining protein, MreB/Mrl family. A close homolog is found in the Archaeon Methanobacterium thermoautotrophicum, and a more distant homolog in Archaeoglobus fulgidus. The family is related to cell division protein FtsA and heat shock protein DnaK.
Probab=99.69 E-value=2.7e-17 Score=173.60 Aligned_cols=102 Identities=15% Similarity=0.033 Sum_probs=82.7
Q ss_pred hhhhhhhcCCCeEeeehhHHHhhhhhccCCCCCCcceeeeCCCcceEEEee-cCCccccccceecccccchhHHHHHHhh
Q 007811 2 AELLFETYGVPSVAFGVDAAFSYKYNQQYGICNKDGLAICPGFSTTHVIPF-VEGEPVYRGSCRTNIGGYHITDYLKQLL 80 (589)
Q Consensus 2 ~EiLFE~f~vPsv~~~~qsvLSlya~g~~~~~~~tGLVVD~G~~~T~VvPV-~eG~~l~~a~~rl~~GG~~lt~~L~~lL 80 (589)
++.+||.++++.+++.+++++|+|++|.+.....+++|||+|+++|+|+|| ++|+++.+. +++||.++|++|.+++
T Consensus 117 ~~~~~~~ag~~~~~li~ep~aaa~~~g~~~~~~~~~lVvDiG~gttdvs~v~~~~~~~~~~---~~lGG~did~~l~~~l 193 (333)
T TIGR00904 117 VKESALSAGAREVYLIEEPMAAAIGAGLPVEEPTGSMVVDIGGGTTEVAVISLGGIVVSRS---IRVGGDEFDEAIINYI 193 (333)
T ss_pred HHHHHHHcCCCeEEEecCHHHHHHhcCCcccCCceEEEEEcCCCeEEEEEEEeCCEEecCC---ccchHHHHHHHHHHHH
Confidence 456899999999999999999999998221112578999999999999999 777776654 4899999999999988
Q ss_pred hccCCCCCCCCCHHHHHHHHhcccccccC
Q 007811 81 SLKHPQHMTKLTWEKVEDLKMEHCYIAPD 109 (589)
Q Consensus 81 ~~k~~~~~~~~~~~~v~~IKE~~CyVa~D 109 (589)
..++. ...+...++.||+++|++..+
T Consensus 194 ~~~~~---~~~~~~~ae~lK~~l~~~~~~ 219 (333)
T TIGR00904 194 RRTYN---LLIGEQTAERIKIEIGSAYPL 219 (333)
T ss_pred HHHhc---ccCCHHHHHHHHHHHhccccc
Confidence 75532 234677899999999998654
No 19
>PRK13927 rod shape-determining protein MreB; Provisional
Probab=99.65 E-value=7.2e-17 Score=170.11 Aligned_cols=101 Identities=13% Similarity=0.022 Sum_probs=81.3
Q ss_pred hhhhhhhcCCCeEeeehhHHHhhhhhccCCCCCCcceeeeCCCcceEEEee-cCCccccccceecccccchhHHHHHHhh
Q 007811 2 AELLFETYGVPSVAFGVDAAFSYKYNQQYGICNKDGLAICPGFSTTHVIPF-VEGEPVYRGSCRTNIGGYHITDYLKQLL 80 (589)
Q Consensus 2 ~EiLFE~f~vPsv~~~~qsvLSlya~g~~~~~~~tGLVVD~G~~~T~VvPV-~eG~~l~~a~~rl~~GG~~lt~~L~~lL 80 (589)
++.+|+.++++.+++.+++++|+|++|........++|||+|+++|+++|| ++|++..+. +++||.++|++|.++|
T Consensus 115 ~~~a~~~ag~~~~~li~ep~aaa~~~g~~~~~~~~~lvvDiGggttdvs~v~~~~~~~~~~---~~lGG~~id~~l~~~l 191 (334)
T PRK13927 115 VRESALGAGAREVYLIEEPMAAAIGAGLPVTEPTGSMVVDIGGGTTEVAVISLGGIVYSKS---VRVGGDKFDEAIINYV 191 (334)
T ss_pred HHHHHHHcCCCeeccCCChHHHHHHcCCcccCCCeEEEEEeCCCeEEEEEEecCCeEeeCC---cCChHHHHHHHHHHHH
Confidence 578999999999999999999999998221112457999999999999999 777776654 4799999999999998
Q ss_pred hccCCCCCCCCCHHHHHHHHhccccccc
Q 007811 81 SLKHPQHMTKLTWEKVEDLKMEHCYIAP 108 (589)
Q Consensus 81 ~~k~~~~~~~~~~~~v~~IKE~~CyVa~ 108 (589)
..++ .+ ..+...++.||+.+||+..
T Consensus 192 ~~~~-~~--~~~~~~ae~iK~~~~~~~~ 216 (334)
T PRK13927 192 RRNY-NL--LIGERTAERIKIEIGSAYP 216 (334)
T ss_pred HHHh-Cc--CcCHHHHHHHHHHhhccCC
Confidence 7543 22 2456788999999998864
No 20
>PRK13929 rod-share determining protein MreBH; Provisional
Probab=99.63 E-value=1.9e-16 Score=167.59 Aligned_cols=99 Identities=16% Similarity=0.101 Sum_probs=79.9
Q ss_pred hhhhcCCCeEeeehhHHHhhhhhccCCCCCCcceeeeCCCcceEEEee-cCCccccccceecccccchhHHHHHHhhhcc
Q 007811 5 LFETYGVPSVAFGVDAAFSYKYNQQYGICNKDGLAICPGFSTTHVIPF-VEGEPVYRGSCRTNIGGYHITDYLKQLLSLK 83 (589)
Q Consensus 5 LFE~f~vPsv~~~~qsvLSlya~g~~~~~~~tGLVVD~G~~~T~VvPV-~eG~~l~~a~~rl~~GG~~lt~~L~~lL~~k 83 (589)
+|+.+|++.+++.+++++|+|++|.......+++|||+|+++|+++|| ++|.... ..+++||.++|++|.++|...
T Consensus 120 a~~~ag~~~~~li~ep~Aaa~~~g~~~~~~~~~lvvDiG~gtt~v~vi~~~~~~~~---~~~~~GG~~id~~l~~~l~~~ 196 (335)
T PRK13929 120 AVKNCGAKNVHLIEEPVAAAIGADLPVDEPVANVVVDIGGGTTEVAIISFGGVVSC---HSIRIGGDQLDEDIVSFVRKK 196 (335)
T ss_pred HHHHcCCCeeEeecCHHHHHHhcCCCcCCCceEEEEEeCCCeEEEEEEEeCCEEEe---cCcCCHHHHHHHHHHHHHHHH
Confidence 789999999999999999999997332224679999999999999999 6555543 346899999999999998754
Q ss_pred CCCCCCCCCHHHHHHHHhcccccccC
Q 007811 84 HPQHMTKLTWEKVEDLKMEHCYIAPD 109 (589)
Q Consensus 84 ~~~~~~~~~~~~v~~IKE~~CyVa~D 109 (589)
+ .+. .+...++.||+++|+++.+
T Consensus 197 ~-~~~--~~~~~AE~iK~~l~~~~~~ 219 (335)
T PRK13929 197 Y-NLL--IGERTAEQVKMEIGYALIE 219 (335)
T ss_pred h-CcC--cCHHHHHHHHHHHcCCCCC
Confidence 3 332 3567899999999999754
No 21
>PRK13928 rod shape-determining protein Mbl; Provisional
Probab=99.39 E-value=1.6e-13 Score=145.16 Aligned_cols=101 Identities=12% Similarity=0.004 Sum_probs=79.0
Q ss_pred hhhhhhhcCCCeEeeehhHHHhhhhhccCCCCCCcceeeeCCCcceEEEeecCCccccccceecccccchhHHHHHHhhh
Q 007811 2 AELLFETYGVPSVAFGVDAAFSYKYNQQYGICNKDGLAICPGFSTTHVIPFVEGEPVYRGSCRTNIGGYHITDYLKQLLS 81 (589)
Q Consensus 2 ~EiLFE~f~vPsv~~~~qsvLSlya~g~~~~~~~tGLVVD~G~~~T~VvPV~eG~~l~~a~~rl~~GG~~lt~~L~~lL~ 81 (589)
++.+|+.++++.+++.+++++|+|++|........++|||+|+++|.|.+|..|.++.. ..+++||.++|+.|.+.|.
T Consensus 114 ~~~a~~~ag~~~~~li~ep~Aaa~~~g~~~~~~~~~lVvDiGggttdvsvv~~g~~~~~--~~~~lGG~did~~i~~~l~ 191 (336)
T PRK13928 114 VREAAEQAGAKKVYLIEEPLAAAIGAGLDISQPSGNMVVDIGGGTTDIAVLSLGGIVTS--SSIKVAGDKFDEAIIRYIR 191 (336)
T ss_pred HHHHHHHcCCCceEecccHHHHHHHcCCcccCCCeEEEEEeCCCeEEEEEEEeCCEEEe--CCcCCHHHHHHHHHHHHHH
Confidence 46789999999999999999999999821111256899999999999999999987764 4789999999999999887
Q ss_pred ccCCCCCCCCCHHHHHHHHhcccccc
Q 007811 82 LKHPQHMTKLTWEKVEDLKMEHCYIA 107 (589)
Q Consensus 82 ~k~~~~~~~~~~~~v~~IKE~~CyVa 107 (589)
.++. + ..+...++.+|+.+|++.
T Consensus 192 ~~~~-~--~~~~~~ae~lK~~~~~~~ 214 (336)
T PRK13928 192 KKYK-L--LIGERTAEEIKIKIGTAF 214 (336)
T ss_pred HHhc-h--hcCHHHHHHHHHHhcccc
Confidence 5432 1 123456777777766654
No 22
>PF06723 MreB_Mbl: MreB/Mbl protein; InterPro: IPR004753 Bacterial cell shape varies greatly between species, and characteristic morphologies are used for identification purposes. In addition to individual cell shape, the way in which groups of cells are arranged is also typical of some bacterial species, especially Gram-positive coccoids. For many years, it was believed that micro-organisms with other than spheroidal cell shapes maintained morphology by means of their external cell walls. Recently, however, studies of the Gram-positive rod Bacillus subtilis have revealed two related genes that are essential for the integrity of cell morphogenesis []. Termed mreB and mbl, the gene products localise close to the cell surface, forming filamentous helical structures. Many homologues have been found in diverse bacterial groups, suggesting a common ancestor []. The crystal structure of MreB from Thermotoga maritima has been resolved using X-ray crystallography []. It consists of 19 beta-strands and 15 alpha- helices, and shows remarkable structural similarity to eukaryotic actin. MreB crystals also contain proto-filaments, with individual proteins assembling into polymers like F-actin, in the same orientation. It is hypothesised therefore, that MreB was the forerunner of actin in early eukaryotes [].; GO: 0000902 cell morphogenesis; PDB: 1JCF_A 1JCE_A 2WUS_A 1JCG_A.
Probab=99.02 E-value=2.9e-10 Score=120.04 Aligned_cols=97 Identities=16% Similarity=0.055 Sum_probs=73.9
Q ss_pred hhhcCCCeEeeehhHHHhhhhhccCCCCCCcceeeeCCCcceEEEeecCCccccccceecccccchhHHHHHHhhhccCC
Q 007811 6 FETYGVPSVAFGVDAAFSYKYNQQYGICNKDGLAICPGFSTTHVIPFVEGEPVYRGSCRTNIGGYHITDYLKQLLSLKHP 85 (589)
Q Consensus 6 FE~f~vPsv~~~~qsvLSlya~g~~~~~~~tGLVVD~G~~~T~VvPV~eG~~l~~a~~rl~~GG~~lt~~L~~lL~~k~~ 85 (589)
+...++..+++...++++.++.|..-..-...+|||+|.++|.+.-|.-|-++. ...+.+||.++++-+.+++..+|.
T Consensus 116 ~~~aGa~~V~li~ep~AaAiGaGl~i~~~~g~miVDIG~GtTdiavislggiv~--s~si~~gG~~~DeaI~~~ir~~y~ 193 (326)
T PF06723_consen 116 ARQAGARKVYLIEEPIAAAIGAGLDIFEPRGSMIVDIGGGTTDIAVISLGGIVA--SRSIRIGGDDIDEAIIRYIREKYN 193 (326)
T ss_dssp HHHTT-SEEEEEEHHHHHHHHTT--TTSSS-EEEEEE-SS-EEEEEEETTEEEE--EEEES-SHHHHHHHHHHHHHHHHS
T ss_pred HHHcCCCEEEEecchHHHHhcCCCCCCCCCceEEEEECCCeEEEEEEECCCEEE--EEEEEecCcchhHHHHHHHHHhhC
Confidence 456799999999999999999983211123469999999999999999998877 677889999999999999998873
Q ss_pred CCCCCCCHHHHHHHHhcccccc
Q 007811 86 QHMTKLTWEKVEDLKMEHCYIA 107 (589)
Q Consensus 86 ~~~~~~~~~~v~~IKE~~CyVa 107 (589)
+ .+...+++.||++++++.
T Consensus 194 -l--~Ig~~tAE~iK~~~g~~~ 212 (326)
T PF06723_consen 194 -L--LIGERTAEKIKIEIGSAS 212 (326)
T ss_dssp -E--E--HHHHHHHHHHH-BSS
T ss_pred -c--ccCHHHHHHHHHhcceee
Confidence 3 468899999999999886
No 23
>COG1077 MreB Actin-like ATPase involved in cell morphogenesis [Cell division and chromosome partitioning]
Probab=97.35 E-value=0.00024 Score=74.34 Aligned_cols=95 Identities=18% Similarity=0.108 Sum_probs=73.1
Q ss_pred hcCCCeEeeehhHHHhhhhhccCCCCCCc-ceeeeCCCcceEEEeecCCccccccceecccccchhHHHHHHhhhccCCC
Q 007811 8 TYGVPSVAFGVDAAFSYKYNQQYGICNKD-GLAICPGFSTTHVIPFVEGEPVYRGSCRTNIGGYHITDYLKQLLSLKHPQ 86 (589)
Q Consensus 8 ~f~vPsv~~~~qsvLSlya~g~~~~~~~t-GLVVD~G~~~T~VvPV~eG~~l~~a~~rl~~GG~~lt~~L~~lL~~k~~~ 86 (589)
.=+...+++...++.+..+.|.+ ...++ .+|||+|.++|.|.-|.-|-++. ...+-+||..+++-+..++..+|.-
T Consensus 126 ~aGa~~V~lieEp~aAAIGaglp-i~ep~G~mvvDIGgGTTevaVISlggiv~--~~Sirv~GD~~De~Ii~yvr~~~nl 202 (342)
T COG1077 126 SAGAREVYLIEEPMAAAIGAGLP-IMEPTGSMVVDIGGGTTEVAVISLGGIVS--SSSVRVGGDKMDEAIIVYVRKKYNL 202 (342)
T ss_pred hccCceEEEeccHHHHHhcCCCc-ccCCCCCEEEEeCCCceeEEEEEecCEEE--EeeEEEecchhhHHHHHHHHHHhCe
Confidence 33567789999999999988832 11234 89999999999998887777766 4456689999999998888876554
Q ss_pred CCCCCCHHHHHHHHhccccccc
Q 007811 87 HMTKLTWEKVEDLKMEHCYIAP 108 (589)
Q Consensus 87 ~~~~~~~~~v~~IKE~~CyVa~ 108 (589)
. +....+++||...+|+.+
T Consensus 203 ~---IGe~taE~iK~eiG~a~~ 221 (342)
T COG1077 203 L---IGERTAEKIKIEIGSAYP 221 (342)
T ss_pred e---ecHHHHHHHHHHhccccc
Confidence 3 456778899988888864
No 24
>TIGR01174 ftsA cell division protein FtsA. This bacterial cell division protein interacts with FtsZ, the bacterial homolog of tubulin. It is an ATP-binding protein and shows structural similarities to actin and heat shock cognate protein 70.
Probab=97.18 E-value=0.0028 Score=68.23 Aligned_cols=92 Identities=21% Similarity=0.141 Sum_probs=72.3
Q ss_pred hhhhcCCCeEeeehhHHHhhhhhccCCCCCCcceeeeCCCcceEEEeecCCccccccceecccccchhHHHHHHhhhccC
Q 007811 5 LFETYGVPSVAFGVDAAFSYKYNQQYGICNKDGLAICPGFSTTHVIPFVEGEPVYRGSCRTNIGGYHITDYLKQLLSLKH 84 (589)
Q Consensus 5 LFE~f~vPsv~~~~qsvLSlya~g~~~~~~~tGLVVD~G~~~T~VvPV~eG~~l~~a~~rl~~GG~~lt~~L~~lL~~k~ 84 (589)
+++.-++.-+.+..+++.+.++...........+|||+|+++|.++.+.+|.+.. +..+++||.++|+.+.+.|.
T Consensus 166 ~~~~aGl~~~~i~~~~~A~a~a~~~~~~~~~~~~vvDiG~gtt~i~i~~~g~~~~--~~~i~~GG~~it~~i~~~l~--- 240 (371)
T TIGR01174 166 CVERCGLEVDNIVLSGLASAIAVLTEDEKELGVCLIDIGGGTTDIAVYTGGSIRY--TKVIPIGGNHITKDIAKALR--- 240 (371)
T ss_pred HHHHcCCCeeeEEEhhhhhhhhhcCcchhcCCEEEEEeCCCcEEEEEEECCEEEE--EeeecchHHHHHHHHHHHhC---
Confidence 4566678888888888888887652111123468999999999999999998765 67789999999999877653
Q ss_pred CCCCCCCCHHHHHHHHhcccccc
Q 007811 85 PQHMTKLTWEKVEDLKMEHCYIA 107 (589)
Q Consensus 85 ~~~~~~~~~~~v~~IKE~~CyVa 107 (589)
.+...++.+|..+|.+.
T Consensus 241 ------~~~~~AE~lK~~~~~~~ 257 (371)
T TIGR01174 241 ------TPLEEAERIKIKYGCAS 257 (371)
T ss_pred ------CCHHHHHHHHHHeeEec
Confidence 46788999999999874
No 25
>TIGR02529 EutJ ethanolamine utilization protein EutJ family protein.
Probab=96.43 E-value=0.0099 Score=60.49 Aligned_cols=83 Identities=23% Similarity=0.302 Sum_probs=66.0
Q ss_pred hhhcCCCeEeeehhHHHhhhhhccCCCCCCcceeeeCCCcceEEEeecCCccccccceecccccchhHHHHHHhhhccCC
Q 007811 6 FETYGVPSVAFGVDAAFSYKYNQQYGICNKDGLAICPGFSTTHVIPFVEGEPVYRGSCRTNIGGYHITDYLKQLLSLKHP 85 (589)
Q Consensus 6 FE~f~vPsv~~~~qsvLSlya~g~~~~~~~tGLVVD~G~~~T~VvPV~eG~~l~~a~~rl~~GG~~lt~~L~~lL~~k~~ 85 (589)
++.-++.-+.+.+.++.+.++.+ ...++|||+|.++|.+.-+..|.++. ...+++||.++|+.+.+.+.
T Consensus 84 ~~~aGl~~~~li~ep~Aaa~~~~-----~~~~~vvDiGggtt~i~i~~~G~i~~--~~~~~~GG~~it~~Ia~~~~---- 152 (239)
T TIGR02529 84 IESAGIEVLHVLDEPTAAAAVLQ-----IKNGAVVDVGGGTTGISILKKGKVIY--SADEPTGGTHMSLVLAGAYG---- 152 (239)
T ss_pred HHHcCCceEEEeehHHHHHHHhc-----CCCcEEEEeCCCcEEEEEEECCeEEE--EEeeecchHHHHHHHHHHhC----
Confidence 34557888899999998888877 44579999999999998888888776 56778999999998876553
Q ss_pred CCCCCCCHHHHHHHHhccc
Q 007811 86 QHMTKLTWEKVEDLKMEHC 104 (589)
Q Consensus 86 ~~~~~~~~~~v~~IKE~~C 104 (589)
++...++.+|..+.
T Consensus 153 -----i~~~~AE~~K~~~~ 166 (239)
T TIGR02529 153 -----ISFEEAEEYKRGHK 166 (239)
T ss_pred -----CCHHHHHHHHHhcC
Confidence 46677888887643
No 26
>COG0849 ftsA Cell division ATPase FtsA [Cell division and chromosome partitioning]
Probab=96.02 E-value=0.017 Score=63.39 Aligned_cols=93 Identities=18% Similarity=0.113 Sum_probs=72.3
Q ss_pred hhhhcCCCeEeeehhHHHhhhhhccCCCCCCcceeeeCCCcceEEEeecCCccccccceecccccchhHHHHHHhhhccC
Q 007811 5 LFETYGVPSVAFGVDAAFSYKYNQQYGICNKDGLAICPGFSTTHVIPFVEGEPVYRGSCRTNIGGYHITDYLKQLLSLKH 84 (589)
Q Consensus 5 LFE~f~vPsv~~~~qsvLSlya~g~~~~~~~tGLVVD~G~~~T~VvPV~eG~~l~~a~~rl~~GG~~lt~~L~~lL~~k~ 84 (589)
++|.-++.-..++.+++.|.++.-..+-....+++||+|+++|.|.-+.+|.+.. +..+++||.++|.=+.+-|.
T Consensus 173 ~v~r~gl~v~~i~l~plAsa~a~L~~dEkelGv~lIDiG~GTTdIai~~~G~l~~--~~~ipvgG~~vT~DIa~~l~--- 247 (418)
T COG0849 173 CVERAGLKVDNIVLEPLASALAVLTEDEKELGVALIDIGGGTTDIAIYKNGALRY--TGVIPVGGDHVTKDIAKGLK--- 247 (418)
T ss_pred HHHHhCCCeeeEEEehhhhhhhccCcccHhcCeEEEEeCCCcEEEEEEECCEEEE--EeeEeeCccHHHHHHHHHhC---
Confidence 4555566666676677777766642222245789999999999999999999988 77889999999999988874
Q ss_pred CCCCCCCCHHHHHHHHhccccccc
Q 007811 85 PQHMTKLTWEKVEDLKMEHCYIAP 108 (589)
Q Consensus 85 ~~~~~~~~~~~v~~IKE~~CyVa~ 108 (589)
.+.+.++.||.+|+....
T Consensus 248 ------t~~~~AE~iK~~~g~a~~ 265 (418)
T COG0849 248 ------TPFEEAERIKIKYGSALI 265 (418)
T ss_pred ------CCHHHHHHHHHHcCcccc
Confidence 467889999999876643
No 27
>PRK15080 ethanolamine utilization protein EutJ; Provisional
Probab=95.98 E-value=0.022 Score=58.86 Aligned_cols=82 Identities=21% Similarity=0.257 Sum_probs=63.4
Q ss_pred hhhcCCCeEeeehhHHHhhhhhccCCCCCCcceeeeCCCcceEEEeecCCccccccceecccccchhHHHHHHhhhccCC
Q 007811 6 FETYGVPSVAFGVDAAFSYKYNQQYGICNKDGLAICPGFSTTHVIPFVEGEPVYRGSCRTNIGGYHITDYLKQLLSLKHP 85 (589)
Q Consensus 6 FE~f~vPsv~~~~qsvLSlya~g~~~~~~~tGLVVD~G~~~T~VvPV~eG~~l~~a~~rl~~GG~~lt~~L~~lL~~k~~ 85 (589)
++.-++.-..+...+..+.++.+ ...++|||+|.++|.+.-+.+|.++. ...+++||.++|+.|.+.+.
T Consensus 111 ~~~aGl~~~~ii~e~~A~a~~~~-----~~~~~vvDIGggtt~i~v~~~g~~~~--~~~~~~GG~~it~~Ia~~l~---- 179 (267)
T PRK15080 111 VESAGLEVTHVLDEPTAAAAVLG-----IDNGAVVDIGGGTTGISILKDGKVVY--SADEPTGGTHMSLVLAGAYG---- 179 (267)
T ss_pred HHHcCCceEEEechHHHHHHHhC-----CCCcEEEEeCCCcEEEEEEECCeEEE--EecccCchHHHHHHHHHHhC----
Confidence 44557777777788877777766 44589999999999998888888776 45779999999999987653
Q ss_pred CCCCCCCHHHHHHHHhcc
Q 007811 86 QHMTKLTWEKVEDLKMEH 103 (589)
Q Consensus 86 ~~~~~~~~~~v~~IKE~~ 103 (589)
.+...++.+|...
T Consensus 180 -----i~~~eAE~lK~~~ 192 (267)
T PRK15080 180 -----ISFEEAEQYKRDP 192 (267)
T ss_pred -----CCHHHHHHHHhcc
Confidence 3567777787654
No 28
>PRK09472 ftsA cell division protein FtsA; Reviewed
Probab=95.90 E-value=0.021 Score=62.89 Aligned_cols=92 Identities=12% Similarity=-0.013 Sum_probs=71.5
Q ss_pred hhhhcCCCeEeeehhHHHhhhhhccCCCCCCcceeeeCCCcceEEEeecCCccccccceecccccchhHHHHHHhhhccC
Q 007811 5 LFETYGVPSVAFGVDAAFSYKYNQQYGICNKDGLAICPGFSTTHVIPFVEGEPVYRGSCRTNIGGYHITDYLKQLLSLKH 84 (589)
Q Consensus 5 LFE~f~vPsv~~~~qsvLSlya~g~~~~~~~tGLVVD~G~~~T~VvPV~eG~~l~~a~~rl~~GG~~lt~~L~~lL~~k~ 84 (589)
.++.-++.-..+..+++.+.++...........+|||+|+++|.+.-+.+|.++. +..+++||.++|+.|..-|.
T Consensus 174 a~~~aGl~v~~iv~ep~Aaa~a~l~~~e~~~gv~vvDiGggtTdisv~~~G~l~~--~~~i~~GG~~it~dIa~~l~--- 248 (420)
T PRK09472 174 AVERCGLKVDQLIFAGLASSYAVLTEDERELGVCVVDIGGGTMDIAVYTGGALRH--TKVIPYAGNVVTSDIAYAFG--- 248 (420)
T ss_pred HHHHcCCeEeeEEehhhHHHHHhcChhhhhcCeEEEEeCCCceEEEEEECCEEEE--EeeeechHHHHHHHHHHHhC---
Confidence 4566677778888899888888752211123578999999999999999998775 78899999999999976553
Q ss_pred CCCCCCCCHHHHHHHHhcccccc
Q 007811 85 PQHMTKLTWEKVEDLKMEHCYIA 107 (589)
Q Consensus 85 ~~~~~~~~~~~v~~IKE~~CyVa 107 (589)
++...++.+|..++...
T Consensus 249 ------i~~~~AE~lK~~~g~~~ 265 (420)
T PRK09472 249 ------TPPSDAEAIKVRHGCAL 265 (420)
T ss_pred ------cCHHHHHHHHHhcceec
Confidence 46788999998876543
No 29
>PRK13917 plasmid segregation protein ParM; Provisional
Probab=94.95 E-value=0.046 Score=58.67 Aligned_cols=91 Identities=14% Similarity=-0.071 Sum_probs=67.7
Q ss_pred cCCCeEeeehhHHHhhhhhccCC--------CCCCcceeeeCCCcceEEEeecCCccccccceecccccchhHHHHHHhh
Q 007811 9 YGVPSVAFGVDAAFSYKYNQQYG--------ICNKDGLAICPGFSTTHVIPFVEGEPVYRGSCRTNIGGYHITDYLKQLL 80 (589)
Q Consensus 9 f~vPsv~~~~qsvLSlya~g~~~--------~~~~tGLVVD~G~~~T~VvPV~eG~~l~~a~~rl~~GG~~lt~~L~~lL 80 (589)
.+|..|.+.+|++-++|...... ......+|||+|+++|.++-+.+|.+....+..++.|..++-+.+.+.+
T Consensus 151 I~i~~V~V~pQ~~ga~~~~~~~~~g~~~~~~~~~~~ilvIDIG~~TtD~~v~~~~~~~~~~s~s~~~G~~~~~~~I~~~i 230 (344)
T PRK13917 151 INVKGVKVVAQPMGTLLDLYLDNDGVVADKAFEEGKVSVIDFGSGTTDLDTIQNLKRVEEESFVIPKGTIDVYKRIASHI 230 (344)
T ss_pred EEEEEEEEecccHHHHHHHHhcccCcccchhcccCcEEEEEcCCCcEEEEEEeCcEEcccccccccchHHHHHHHHHHHH
Confidence 45677899999998887654110 0112459999999999999999999999888999999999999999999
Q ss_pred hccCCCCCCCCCHHHHHHHHh
Q 007811 81 SLKHPQHMTKLTWEKVEDLKM 101 (589)
Q Consensus 81 ~~k~~~~~~~~~~~~v~~IKE 101 (589)
..+.+.. .++.+.++.+.+
T Consensus 231 ~~~~~~~--~~~~~~ie~~l~ 249 (344)
T PRK13917 231 SKKEEGA--SITPYMLEKGLE 249 (344)
T ss_pred HhhCCCC--CCCHHHHHHHHH
Confidence 6443332 345566665543
No 30
>TIGR01175 pilM type IV pilus assembly protein PilM. This protein is required for the assembly of the type IV fimbria in Pseudomonas aeruginosa responsible for twitching motility, and for a similar pilus-like structure in Synechocystis. It is also found in species such as Deinococcus described as having natural transformation (for which a type IV pilus-like structure is proposed) but not fimbria.
Probab=94.37 E-value=0.19 Score=53.29 Aligned_cols=60 Identities=15% Similarity=0.179 Sum_probs=51.8
Q ss_pred cceeeeCCCcceEEEeecCCccccccceecccccchhHHHHHHhhhccCCCCCCCCCHHHHHHHHhccccc
Q 007811 36 DGLAICPGFSTTHVIPFVEGEPVYRGSCRTNIGGYHITDYLKQLLSLKHPQHMTKLTWEKVEDLKMEHCYI 106 (589)
Q Consensus 36 tGLVVD~G~~~T~VvPV~eG~~l~~a~~rl~~GG~~lt~~L~~lL~~k~~~~~~~~~~~~v~~IKE~~CyV 106 (589)
+.++||+|+++|.++-+.+|.++. ++.+++||.++|+-+.+.+. ++...++.+|....+.
T Consensus 189 ~~~lvdiG~~~t~l~i~~~g~~~~--~r~i~~G~~~i~~~i~~~~~---------~~~~~Ae~~k~~~~~~ 248 (348)
T TIGR01175 189 DAALVDIGATSSTLNLLHPGRMLF--TREVPFGTRQLTSELSRAYG---------LNPEEAGEAKQQGGLP 248 (348)
T ss_pred eEEEEEECCCcEEEEEEECCeEEE--EEEeechHHHHHHHHHHHcC---------CCHHHHHHHHhcCCCC
Confidence 488999999999999999999888 88999999999998876653 4678899999887654
No 31
>TIGR02529 EutJ ethanolamine utilization protein EutJ family protein.
Probab=93.46 E-value=0.039 Score=56.11 Aligned_cols=43 Identities=21% Similarity=0.566 Sum_probs=35.1
Q ss_pred CCeEEecCCCCCCChHHHHHHHHHhhcCCCCCeEEEeCCCCccceeechhh
Q 007811 505 SSILMTGGCCLFPGMSERLEAGIRMIRPCGAPIKVVRALDPVLDAWRGASV 555 (589)
Q Consensus 505 ~NIvLtGG~S~~~Gf~eRL~~EL~~l~p~~~~v~V~~~~d~~~~aW~Ggsi 555 (589)
..|+||||+|++||+.+.|.+.+. +.|..+.+|.+.+=+|+++
T Consensus 196 ~~v~LtGG~a~ipgl~e~l~~~lg--------~~v~~~~~P~~~va~Gaa~ 238 (239)
T TIGR02529 196 KDLYLVGGACSFSGFADVFEKQLG--------LNVIKPQHPLYVTPLGIAM 238 (239)
T ss_pred CEEEEECchhcchhHHHHHHHHhC--------CCcccCCCCCeehhheeec
Confidence 479999999999999999998873 1234467899999888764
No 32
>PRK15080 ethanolamine utilization protein EutJ; Provisional
Probab=93.45 E-value=0.036 Score=57.29 Aligned_cols=46 Identities=26% Similarity=0.517 Sum_probs=37.3
Q ss_pred cCCeEEecCCCCCCChHHHHHHHHHhhcCCCCCeEEEeCCCCccceeechhhhc
Q 007811 504 TSSILMTGGCCLFPGMSERLEAGIRMIRPCGAPIKVVRALDPVLDAWRGASVYA 557 (589)
Q Consensus 504 ~~NIvLtGG~S~~~Gf~eRL~~EL~~l~p~~~~v~V~~~~d~~~~aW~Ggsila 557 (589)
...|+||||+|.+||+.+.+.+.+. .+ |..+++|.+++=+|+++++
T Consensus 222 ~~~IvLtGG~s~lpgl~e~l~~~lg------~~--v~~~~~P~~~~a~Gaa~~~ 267 (267)
T PRK15080 222 VEDIYLVGGTCCLPGFEEVFEKQTG------LP--VHKPQHPLFVTPLGIALSC 267 (267)
T ss_pred CCEEEEECCcccchhHHHHHHHHhC------CC--cccCCCchHHHHHHHHhhC
Confidence 4689999999999999999998873 12 3346789999999988753
No 33
>KOG0681 consensus Actin-related protein - Arp5p [Cytoskeleton]
Probab=93.33 E-value=0.81 Score=51.37 Aligned_cols=67 Identities=22% Similarity=0.180 Sum_probs=42.2
Q ss_pred CCcccccHHHHHHHHHhhhhhhcc-C-CCCC--CCCCCchhhHHHHHhhcCCCCCchhhhHHHHHHHHHHHhhhhcCCCC
Q 007811 352 GRGERLNAAQRERMRLLTTAAFDR-G-KGED--TFGAKDEDWQLYKLMSRDNDDDDEEMDENEAELARISARLQEVDPTF 427 (589)
Q Consensus 352 ~~~~r~s~a~~~rm~~i~~~~~~~-~-~~~d--~fg~~d~dw~vy~~i~~~~~~~~~d~e~~~~~l~~le~~L~~~Dp~F 427 (589)
+.-.|++.+.+.| |.....+.|. | +++| -| +|.+-+.+- +-+|....+.+|.++...+-.++++-
T Consensus 427 r~~~~La~~~~~r-rk~~~~t~D~fg~~Dedw~vY----e~lee~~~~------~~~dl~~l~~~L~e~Dp~F~~~~~~~ 495 (645)
T KOG0681|consen 427 RALARLAYEQVVR-RKRKEATPDNFGARDEDWDVY----EDLEEENKS------ILEDLKSLNHELLEFDPHFTQYVEGT 495 (645)
T ss_pred HHHHhhhHHHHHH-HhcccCCccccccchhhHHHH----HHhhhhhhh------HHHHHHHHHHHHHhhCcccccccccc
Confidence 3346888888888 7888888773 2 2222 33 333333321 12455677789999999999999554
Q ss_pred CC
Q 007811 428 VP 429 (589)
Q Consensus 428 ~~ 429 (589)
++
T Consensus 496 ~d 497 (645)
T KOG0681|consen 496 TD 497 (645)
T ss_pred cC
Confidence 43
No 34
>TIGR03739 PRTRC_D PRTRC system protein D. A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. It is often found on plasmids. This protein family is designated PRTRC system protein D. The gray zone, between trusted and noise, includes proteins found in the same genomes as other proteins of the PRTRC systems, but not in the same contiguous gene region.
Probab=93.30 E-value=0.066 Score=56.66 Aligned_cols=76 Identities=18% Similarity=-0.019 Sum_probs=60.1
Q ss_pred cCCCeEeeehhHHHhhhhhccC----CCCCCcceeeeCCCcceEEEeecCCccccccceecccccchhHHHHHHhhhccC
Q 007811 9 YGVPSVAFGVDAAFSYKYNQQY----GICNKDGLAICPGFSTTHVIPFVEGEPVYRGSCRTNIGGYHITDYLKQLLSLKH 84 (589)
Q Consensus 9 f~vPsv~~~~qsvLSlya~g~~----~~~~~tGLVVD~G~~~T~VvPV~eG~~l~~a~~rl~~GG~~lt~~L~~lL~~k~ 84 (589)
+.|..|.+.+|++-++|..-.. .....+.+|||+|+.+|.++-+-++.+....+..++.|-..+.+-+.+.|..++
T Consensus 137 i~I~~V~V~PQ~~Ga~~~~~~~~~~~~~~~~~~lVIDIG~~TtD~~~~~~~~~~~~~s~s~~~G~~~~~~~I~~~i~~~~ 216 (320)
T TIGR03739 137 VTVRKVLAVPQPQGALVHFVAQHGKLLTGKEQSLIIDPGYFTFDWLVARGMRLVQKRSGSVNGGMSDIYRLLAAEISKDI 216 (320)
T ss_pred EEEEEEEEeCCChHHHHHHHhcCCCcccCcCcEEEEecCCCeeeeehccCCEEcccccCCchhHHHHHHHHHHHHHHhhc
Confidence 4677889999998777654200 001345699999999999998888888888888999999999999999987653
No 35
>PRK01433 hscA chaperone protein HscA; Provisional
Probab=89.95 E-value=0.72 Score=53.21 Aligned_cols=78 Identities=17% Similarity=0.005 Sum_probs=54.0
Q ss_pred hhcCCCeEeeehhHHHhhhhhccCCCCCCcceeeeCCCcceEEEee--cCCccc-cccceecccccchhHHHHHHhhhcc
Q 007811 7 ETYGVPSVAFGVDAAFSYKYNQQYGICNKDGLAICPGFSTTHVIPF--VEGEPV-YRGSCRTNIGGYHITDYLKQLLSLK 83 (589)
Q Consensus 7 E~f~vPsv~~~~qsvLSlya~g~~~~~~~tGLVVD~G~~~T~VvPV--~eG~~l-~~a~~rl~~GG~~lt~~L~~lL~~k 83 (589)
+.-|++-+.+.+.+..+.+++|.......+-+|+|+|.+++.|.-+ .+|..- .....-..+||.+++..|...+..+
T Consensus 165 ~~AGl~v~~li~EPtAAAlay~~~~~~~~~vlV~DlGGGT~DvSi~~~~~~~~~V~at~gd~~lGG~d~D~~l~~~~~~~ 244 (595)
T PRK01433 165 KIAGFEVLRLIAEPTAAAYAYGLNKNQKGCYLVYDLGGGTFDVSILNIQEGIFQVIATNGDNMLGGNDIDVVITQYLCNK 244 (595)
T ss_pred HHcCCCEEEEecCcHHHHHHHhcccCCCCEEEEEECCCCcEEEEEEEEeCCeEEEEEEcCCcccChHHHHHHHHHHHHHh
Confidence 3447788889999999999987321112457999999999987654 345221 1112234699999999998888765
Q ss_pred C
Q 007811 84 H 84 (589)
Q Consensus 84 ~ 84 (589)
.
T Consensus 245 ~ 245 (595)
T PRK01433 245 F 245 (595)
T ss_pred c
Confidence 3
No 36
>PRK09472 ftsA cell division protein FtsA; Reviewed
Probab=89.11 E-value=0.16 Score=56.02 Aligned_cols=51 Identities=18% Similarity=0.359 Sum_probs=38.0
Q ss_pred hhcCCeEEecCCCCCCChHHHHHHHHHhhcCCCCCeEEEeC----------CCCccceeechhhhcc
Q 007811 502 RLTSSILMTGGCCLFPGMSERLEAGIRMIRPCGAPIKVVRA----------LDPVLDAWRGASVYAT 558 (589)
Q Consensus 502 ~L~~NIvLtGG~S~~~Gf~eRL~~EL~~l~p~~~~v~V~~~----------~d~~~~aW~Ggsilas 558 (589)
.+-+.||||||+|++||+.+.+.+-+.. ++++..| .+|.|++=+|...++.
T Consensus 327 ~~~~givLtGG~a~lpgi~e~~~~~f~~------~vri~~P~~~~g~~~~~~~P~~ata~Gl~~~~~ 387 (420)
T PRK09472 327 HLAAGIVLTGGAAQIEGLAACAQRVFHT------QVRIGAPLNITGLTDYAQEPYYSTAVGLLHYGK 387 (420)
T ss_pred cCCCEEEEeCchhccccHHHHHHHHhCC------CeEEeCCcccCCChhhcCCcHHHHHHHHHHHhh
Confidence 3456699999999999999998877642 2344322 3678888899888865
No 37
>CHL00094 dnaK heat shock protein 70
Probab=88.48 E-value=0.21 Score=57.80 Aligned_cols=50 Identities=20% Similarity=0.244 Sum_probs=38.8
Q ss_pred hhcCCeEEecCCCCCCChHHHHHHHHHhhcCCCCCeEEEeCCCCccceeechhhhccc
Q 007811 502 RLTSSILMTGGCCLFPGMSERLEAGIRMIRPCGAPIKVVRALDPVLDAWRGASVYATK 559 (589)
Q Consensus 502 ~L~~NIvLtGG~S~~~Gf~eRL~~EL~~l~p~~~~v~V~~~~d~~~~aW~Ggsilasl 559 (589)
.-...|+|+||+|.+|++.+.|..-+.. .+....+|..++..||+++|..
T Consensus 327 ~~i~~ViLvGGssriP~v~~~l~~~fg~--------~~~~~~~pdeava~GAA~~aa~ 376 (621)
T CHL00094 327 SDIDEVVLVGGSTRIPAIQELVKKLLGK--------KPNQSVNPDEVVAIGAAVQAGV 376 (621)
T ss_pred hhCcEEEEECCccCChHHHHHHHHHhCC--------CcCcCCCchhHHHhhhHHHHHH
Confidence 3458999999999999999999876531 1233456788999999999864
No 38
>TIGR01991 HscA Fe-S protein assembly chaperone HscA. The Heat Shock Cognate proteins HscA and HscB act together as chaperones. HscA resembles DnaK but belongs in a separate clade. The apparent function is to aid assembly of iron-sulfur cluster proteins. Homologs from Buchnera and Wolbachia are clearly in the same clade but are highly derived and score lower than some examples of DnaK.
Probab=88.08 E-value=0.24 Score=57.07 Aligned_cols=90 Identities=19% Similarity=0.241 Sum_probs=57.7
Q ss_pred CCCCeEEEeCceeccccccCcCCCCCCCCCCCcchhHHHHhhcCCCCChhhhHhhcCCeEEecCCCCCCChHHHHHHHHH
Q 007811 449 TKEDFQIVLGVERFRCPEILFRPNWVGIDQVGLDEMTGVSIRRLPTKDEDLEQRLTSSILMTGGCCLFPGMSERLEAGIR 528 (589)
Q Consensus 449 p~~~~~I~lg~ERf~~pE~LF~Psl~g~~~~GL~e~I~~sI~~~~~c~~d~r~~L~~NIvLtGG~S~~~Gf~eRL~~EL~ 528 (589)
++.+..+.|+.+.| |-++.|-+ ..+-+.|..++.. ..+...-...|+|+||+|.+|++.+.|..-+.
T Consensus 271 ~g~~~~~~itr~ef---e~l~~~ll-----~~i~~~i~~~L~~-----a~~~~~~id~ViLvGGssriP~V~~~l~~~f~ 337 (599)
T TIGR01991 271 DGKDFKGKLTRDEF---EALIQPLV-----QKTLSICRRALRD-----AGLSVEEIKGVVLVGGSTRMPLVRRAVAELFG 337 (599)
T ss_pred CCcEEEEEEeHHHH---HHHHHHHH-----HHHHHHHHHHHHH-----cCCChhhCCEEEEECCcCCChHHHHHHHHHhC
Confidence 34446677776666 34455532 2344555666642 12223335789999999999999999987653
Q ss_pred hhcCCCCCeEEEeCCCCccceeechhhhccc
Q 007811 529 MIRPCGAPIKVVRALDPVLDAWRGASVYATK 559 (589)
Q Consensus 529 ~l~p~~~~v~V~~~~d~~~~aW~Ggsilasl 559 (589)
. .+....+|..++=.||++.|..
T Consensus 338 ~--------~~~~~~npdeaVA~GAai~a~~ 360 (599)
T TIGR01991 338 Q--------EPLTDIDPDQVVALGAAIQADL 360 (599)
T ss_pred C--------CCCCCCCCcHHHHHHHHHHHHH
Confidence 1 1233457788888999998854
No 39
>PTZ00400 DnaK-type molecular chaperone; Provisional
Probab=87.95 E-value=0.82 Score=53.44 Aligned_cols=76 Identities=12% Similarity=-0.035 Sum_probs=54.7
Q ss_pred hcCCCeEeeehhHHHhhhhhccCCCCCCcceeeeCCCcceEEEee--cCCccc-cccceecccccchhHHHHHHhhhcc
Q 007811 8 TYGVPSVAFGVDAAFSYKYNQQYGICNKDGLAICPGFSTTHVIPF--VEGEPV-YRGSCRTNIGGYHITDYLKQLLSLK 83 (589)
Q Consensus 8 ~f~vPsv~~~~qsvLSlya~g~~~~~~~tGLVVD~G~~~T~VvPV--~eG~~l-~~a~~rl~~GG~~lt~~L~~lL~~k 83 (589)
.-|++.+.+.+.+..+.+++|........-+|+|+|.+++.|.-+ .+|... .....-.++||.+++..|...+..+
T Consensus 199 ~AGl~v~~li~EptAAAlay~~~~~~~~~vlV~DlGgGT~DvSv~~~~~g~~~v~a~~gd~~LGG~d~D~~l~~~l~~~ 277 (663)
T PTZ00400 199 IAGLDVLRIINEPTAAALAFGMDKNDGKTIAVYDLGGGTFDISILEILGGVFEVKATNGNTSLGGEDFDQRILNYLIAE 277 (663)
T ss_pred HcCCceEEEeCchHHHHHHhccccCCCcEEEEEeCCCCeEEEEEEEecCCeeEEEecccCCCcCHHHHHHHHHHHHHHH
Confidence 347788999999999999988321123468999999999998754 355432 2223345899999999998777543
No 40
>CHL00094 dnaK heat shock protein 70
Probab=87.19 E-value=0.87 Score=52.77 Aligned_cols=75 Identities=17% Similarity=0.053 Sum_probs=53.1
Q ss_pred hcCCCeEeeehhHHHhhhhhccCCCCCCcceeeeCCCcceEEEeecCCcc---ccccceecccccchhHHHHHHhhhc
Q 007811 8 TYGVPSVAFGVDAAFSYKYNQQYGICNKDGLAICPGFSTTHVIPFVEGEP---VYRGSCRTNIGGYHITDYLKQLLSL 82 (589)
Q Consensus 8 ~f~vPsv~~~~qsvLSlya~g~~~~~~~tGLVVD~G~~~T~VvPV~eG~~---l~~a~~rl~~GG~~lt~~L~~lL~~ 82 (589)
.-|+..+.+.+.+..+.++++........-+|+|+|.+++.|.-+--|.. +.....-.++||.+++..|...+..
T Consensus 160 ~AGl~v~~li~EptAAAlay~~~~~~~~~vlV~DlGgGT~DvSv~~~~~~~~~vla~~gd~~lGG~d~D~~l~~~~~~ 237 (621)
T CHL00094 160 IAGLEVLRIINEPTAASLAYGLDKKNNETILVFDLGGGTFDVSILEVGDGVFEVLSTSGDTHLGGDDFDKKIVNWLIK 237 (621)
T ss_pred HcCCceEEEeccHHHHHHHhccccCCCCEEEEEEcCCCeEEEEEEEEcCCEEEEEEEecCCCcChHHHHHHHHHHHHH
Confidence 34677788999999999888732112346899999999999876543321 1222344689999999988877654
No 41
>TIGR02350 prok_dnaK chaperone protein DnaK. Members of this family are the chaperone DnaK, of the DnaK-DnaJ-GrpE chaperone system. All members of the seed alignment were taken from completely sequenced bacterial or archaeal genomes and (except for Mycoplasma sequence) found clustered with other genes of this systems. This model excludes DnaK homologs that are not DnaK itself, such as the heat shock cognate protein HscA (TIGR01991). However, it is not designed to distinguish among DnaK paralogs in eukaryotes. Note that a number of dnaK genes have shadow ORFs in the same reverse (relative to dnaK) reading frame, a few of which have been assigned glutamate dehydrogenase activity. The significance of this observation is unclear; lengths of such shadow ORFs are highly variable as if the presumptive protein product is not conserved.
Probab=87.10 E-value=0.3 Score=56.12 Aligned_cols=86 Identities=14% Similarity=0.169 Sum_probs=55.4
Q ss_pred eEEEeCceeccccccCcCCCCCCCCCCCcchhHHHHhhcCCCCChhhhHhhcCCeEEecCCCCCCChHHHHHHHHHhhcC
Q 007811 453 FQIVLGVERFRCPEILFRPNWVGIDQVGLDEMTGVSIRRLPTKDEDLEQRLTSSILMTGGCCLFPGMSERLEAGIRMIRP 532 (589)
Q Consensus 453 ~~I~lg~ERf~~pE~LF~Psl~g~~~~GL~e~I~~sI~~~~~c~~d~r~~L~~NIvLtGG~S~~~Gf~eRL~~EL~~l~p 532 (589)
..+.|..+.|. -++.|-+ ..+..+|..++... .+...-...|+|+||+|.+|++.+.|..-+.
T Consensus 287 ~~~~itr~~fe---~l~~~l~-----~~~~~~i~~~l~~a-----~~~~~~i~~V~LvGGssriP~v~~~i~~~f~---- 349 (595)
T TIGR02350 287 LEMTLTRAKFE---ELTADLV-----ERTKEPVRQALKDA-----GLSASDIDEVILVGGSTRIPAVQELVKDFFG---- 349 (595)
T ss_pred EEEEEeHHHHH---HHHHHHH-----HHHHHHHHHHHHHc-----CCCHhHCcEEEEECCcccChHHHHHHHHHhC----
Confidence 45566666552 3444421 23555566666421 2223335889999999999999999877542
Q ss_pred CCCCeEEEeCCCCccceeechhhhccc
Q 007811 533 CGAPIKVVRALDPVLDAWRGASVYATK 559 (589)
Q Consensus 533 ~~~~v~V~~~~d~~~~aW~Ggsilasl 559 (589)
. .+....+|..++..||++.|..
T Consensus 350 ~----~~~~~~~pdeava~GAa~~aa~ 372 (595)
T TIGR02350 350 K----EPNKSVNPDEVVAIGAAIQGGV 372 (595)
T ss_pred C----cccCCcCcHHHHHHHHHHHHHH
Confidence 1 2344557788999999998863
No 42
>TIGR02259 benz_CoA_red_A benzoyl-CoA reductase, bcr type, subunit A. This model describes A, or gamma, subunit of the bcr type of benzoyl-CoA reductase, a 4-subunit enzyme. Many aromatic compounds are metabolized by way of benzoyl-CoA. This family shows strong sequence similarity to the 2-hydroxyglutaryl-CoA dehydratase alpha chain and to subunits of different types of benzoyl-CoA reductase (such as the bzd type).
Probab=86.37 E-value=0.49 Score=51.68 Aligned_cols=52 Identities=21% Similarity=0.233 Sum_probs=43.3
Q ss_pred hcCCeEEecCCCCCCChHHHHHHHHHhhcCCCCCeEEEeCCCCccceeechhhhc
Q 007811 503 LTSSILMTGGCCLFPGMSERLEAGIRMIRPCGAPIKVVRALDPVLDAWRGASVYA 557 (589)
Q Consensus 503 L~~NIvLtGG~S~~~Gf~eRL~~EL~~l~p~~~~v~V~~~~d~~~~aW~Ggsila 557 (589)
+-..|+++||.+.-+||...|.+.|..-.+ ..+|+.|++|++..-+||+++|
T Consensus 381 i~~~VvftGGvA~N~gvv~aLe~~L~~~~~---~~~V~Vp~~pq~~GALGAAL~a 432 (432)
T TIGR02259 381 ITDQFTFTGGVAKNEAAVKELRKLIKENYG---EVQINIDPDSIYTGALGASEFA 432 (432)
T ss_pred CCCCEEEECCccccHHHHHHHHHHHccccC---CCeEecCCCccHHHHHHHHHhC
Confidence 456899999999999999999998864332 2467779999999999999875
No 43
>TIGR01991 HscA Fe-S protein assembly chaperone HscA. The Heat Shock Cognate proteins HscA and HscB act together as chaperones. HscA resembles DnaK but belongs in a separate clade. The apparent function is to aid assembly of iron-sulfur cluster proteins. Homologs from Buchnera and Wolbachia are clearly in the same clade but are highly derived and score lower than some examples of DnaK.
Probab=86.36 E-value=1.9 Score=49.88 Aligned_cols=77 Identities=12% Similarity=-0.013 Sum_probs=53.5
Q ss_pred hhcCCCeEeeehhHHHhhhhhccCCCCCCcceeeeCCCcceEEEee--cCCcc-ccccceecccccchhHHHHHHhhhcc
Q 007811 7 ETYGVPSVAFGVDAAFSYKYNQQYGICNKDGLAICPGFSTTHVIPF--VEGEP-VYRGSCRTNIGGYHITDYLKQLLSLK 83 (589)
Q Consensus 7 E~f~vPsv~~~~qsvLSlya~g~~~~~~~tGLVVD~G~~~T~VvPV--~eG~~-l~~a~~rl~~GG~~lt~~L~~lL~~k 83 (589)
+.-|++-+.+.+.+..+.++++.......+-+|+|+|.+++.|.-+ ..|.. +.....-..+||.+++..|...+..+
T Consensus 153 ~~AGl~v~~li~EPtAAAlay~~~~~~~~~vlV~DlGgGT~DvSi~~~~~~~~~vla~~gd~~lGG~d~D~~l~~~l~~~ 232 (599)
T TIGR01991 153 RLAGLNVLRLLNEPTAAAVAYGLDKASEGIYAVYDLGGGTFDVSILKLTKGVFEVLATGGDSALGGDDFDHALAKWILKQ 232 (599)
T ss_pred HHcCCCceEEecCHHHHHHHHhhccCCCCEEEEEEcCCCeEEEEEEEEcCCeEEEEEEcCCCCCCHHHHHHHHHHHHHHh
Confidence 4457778889999988888776221123567999999999988644 24432 11122335899999999999888654
No 44
>TIGR03286 methan_mark_15 putative methanogenesis marker protein 15. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The exact function is unknown, but likely is linked to methanogenesis or a process closely connected to it. Related proteins include the BadF/BadG/BcrA/BcrD ATPase family (pfam01869), which includes an activator for (R)-2-hydroxyglutaryl-CoA dehydratase.
Probab=86.35 E-value=0.38 Score=52.63 Aligned_cols=68 Identities=18% Similarity=0.208 Sum_probs=50.2
Q ss_pred CCcchhHHHHhhcCCCCChhhhHhhcCCeEEecCCCCCCChHHHHHHHHHhhcCCCCCeEEEeCCCCccceeechhhhcc
Q 007811 479 VGLDEMTGVSIRRLPTKDEDLEQRLTSSILMTGGCCLFPGMSERLEAGIRMIRPCGAPIKVVRALDPVLDAWRGASVYAT 558 (589)
Q Consensus 479 ~GL~e~I~~sI~~~~~c~~d~r~~L~~NIvLtGG~S~~~Gf~eRL~~EL~~l~p~~~~v~V~~~~d~~~~aW~Ggsilas 558 (589)
.||+..|..-+.. -.--+..+-..|+++||.+..+|+...|...|. .+|+.|++|++..-+||+++|+
T Consensus 335 AGl~~SIa~rv~~----~l~~~~~i~~~VvftGGva~N~gvv~ale~~Lg--------~~iivPe~pq~~GAiGAAL~A~ 402 (404)
T TIGR03286 335 AAACHSVAEQVYE----QQLQEIDVREPVILVGGTSLIEGLVKALGDLLG--------IEVVVPEYSQYIGAVGAALLAS 402 (404)
T ss_pred HHHHHHHHHHHHH----HHhhcCCCCCcEEEECChhhhHHHHHHHHHHhC--------CcEEECCcccHHHHHHHHHHhc
Confidence 5676666655520 001122344569999999999999999988873 4677799999999999999984
No 45
>PRK00290 dnaK molecular chaperone DnaK; Provisional
Probab=86.04 E-value=0.35 Score=56.00 Aligned_cols=86 Identities=15% Similarity=0.149 Sum_probs=54.3
Q ss_pred eEEEeCceeccccccCcCCCCCCCCCCCcchhHHHHhhcCCCCChhhhHhhcCCeEEecCCCCCCChHHHHHHHHHhhcC
Q 007811 453 FQIVLGVERFRCPEILFRPNWVGIDQVGLDEMTGVSIRRLPTKDEDLEQRLTSSILMTGGCCLFPGMSERLEAGIRMIRP 532 (589)
Q Consensus 453 ~~I~lg~ERf~~pE~LF~Psl~g~~~~GL~e~I~~sI~~~~~c~~d~r~~L~~NIvLtGG~S~~~Gf~eRL~~EL~~l~p 532 (589)
..+.|..+.|. -++.|-+ ..+...|..+|... .+...-...|+|+||+|.+|++.++|..-+.
T Consensus 289 ~~~~itR~~fe---~l~~~l~-----~~~~~~i~~~l~~a-----~~~~~~id~ViLvGGssriP~v~~~l~~~fg---- 351 (627)
T PRK00290 289 LEIKLTRAKFE---ELTEDLV-----ERTIEPCKQALKDA-----GLSVSDIDEVILVGGSTRMPAVQELVKEFFG---- 351 (627)
T ss_pred EEEEECHHHHH---HHHHHHH-----HHHHHHHHHHHHHc-----CCChhhCcEEEEECCcCCChHHHHHHHHHhC----
Confidence 34566666552 3444421 23445556666421 1222335789999999999999999977652
Q ss_pred CCCCeEEEeCCCCccceeechhhhccc
Q 007811 533 CGAPIKVVRALDPVLDAWRGASVYATK 559 (589)
Q Consensus 533 ~~~~v~V~~~~d~~~~aW~Ggsilasl 559 (589)
. .+....+|..++..||++.|..
T Consensus 352 ~----~~~~~~npdeava~GAa~~aa~ 374 (627)
T PRK00290 352 K----EPNKGVNPDEVVAIGAAIQGGV 374 (627)
T ss_pred C----CCCcCcCChHHHHHhHHHHHHH
Confidence 1 1234457788999999998863
No 46
>PF11104 PilM_2: Type IV pilus assembly protein PilM;; PDB: 2YCH_A.
Probab=85.92 E-value=1.4 Score=46.93 Aligned_cols=57 Identities=32% Similarity=0.494 Sum_probs=43.5
Q ss_pred cceeeeCCCcceEEEeecCCccccccceecccccchhHHHHHHhhhccCCCCCCCCCHHHHHHHHhcc
Q 007811 36 DGLAICPGFSTTHVIPFVEGEPVYRGSCRTNIGGYHITDYLKQLLSLKHPQHMTKLTWEKVEDLKMEH 103 (589)
Q Consensus 36 tGLVVD~G~~~T~VvPV~eG~~l~~a~~rl~~GG~~lt~~L~~lL~~k~~~~~~~~~~~~v~~IKE~~ 103 (589)
+-+|||+|+..|+++-+.+|.++. ++.+++||.++|+-+.+.+. ++...++.+|...
T Consensus 181 ~~~lvdiG~~~t~~~i~~~g~~~f--~R~i~~G~~~l~~~i~~~~~---------i~~~~Ae~~k~~~ 237 (340)
T PF11104_consen 181 TVALVDIGASSTTVIIFQNGKPIF--SRSIPIGGNDLTEAIARELG---------IDFEEAEELKRSG 237 (340)
T ss_dssp EEEEEEE-SS-EEEEEEETTEEEE--EEEES-SHHHHHHHHHHHTT-----------HHHHHHHHHHT
T ss_pred eEEEEEecCCeEEEEEEECCEEEE--EEEEeeCHHHHHHHHHHhcC---------CCHHHHHHHHhcC
Confidence 458999999999999999999987 78889999999999987753 4566677777654
No 47
>PRK05183 hscA chaperone protein HscA; Provisional
Probab=85.85 E-value=2.1 Score=49.59 Aligned_cols=78 Identities=10% Similarity=-0.043 Sum_probs=54.2
Q ss_pred hhcCCCeEeeehhHHHhhhhhccCCCCCCcceeeeCCCcceEEEeec--CCcc-ccccceecccccchhHHHHHHhhhcc
Q 007811 7 ETYGVPSVAFGVDAAFSYKYNQQYGICNKDGLAICPGFSTTHVIPFV--EGEP-VYRGSCRTNIGGYHITDYLKQLLSLK 83 (589)
Q Consensus 7 E~f~vPsv~~~~qsvLSlya~g~~~~~~~tGLVVD~G~~~T~VvPV~--eG~~-l~~a~~rl~~GG~~lt~~L~~lL~~k 83 (589)
+.-|++.+.+.+.+..+.++++.......+-+|+|+|.+++.|.-+- .|.. +.....-..+||.+++..|...+..+
T Consensus 173 ~~AGl~v~~li~EPtAAAlay~~~~~~~~~vlV~DlGGGT~DvSv~~~~~~~~evlat~gd~~lGG~d~D~~l~~~~~~~ 252 (616)
T PRK05183 173 RLAGLNVLRLLNEPTAAAIAYGLDSGQEGVIAVYDLGGGTFDISILRLSKGVFEVLATGGDSALGGDDFDHLLADWILEQ 252 (616)
T ss_pred HHcCCCeEEEecchHHHHHHhhcccCCCCEEEEEECCCCeEEEEEEEeeCCEEEEEEecCCCCcCHHHHHHHHHHHHHHH
Confidence 44578888999999999888762211134578999999999886543 3422 12222335799999999998888665
Q ss_pred C
Q 007811 84 H 84 (589)
Q Consensus 84 ~ 84 (589)
+
T Consensus 253 ~ 253 (616)
T PRK05183 253 A 253 (616)
T ss_pred c
Confidence 3
No 48
>TIGR02350 prok_dnaK chaperone protein DnaK. Members of this family are the chaperone DnaK, of the DnaK-DnaJ-GrpE chaperone system. All members of the seed alignment were taken from completely sequenced bacterial or archaeal genomes and (except for Mycoplasma sequence) found clustered with other genes of this systems. This model excludes DnaK homologs that are not DnaK itself, such as the heat shock cognate protein HscA (TIGR01991). However, it is not designed to distinguish among DnaK paralogs in eukaryotes. Note that a number of dnaK genes have shadow ORFs in the same reverse (relative to dnaK) reading frame, a few of which have been assigned glutamate dehydrogenase activity. The significance of this observation is unclear; lengths of such shadow ORFs are highly variable as if the presumptive protein product is not conserved.
Probab=85.68 E-value=1.2 Score=51.19 Aligned_cols=75 Identities=15% Similarity=0.028 Sum_probs=51.9
Q ss_pred hcCCCeEeeehhHHHhhhhhccCC-CCCCcceeeeCCCcceEEEee--cCCcc-ccccceecccccchhHHHHHHhhhc
Q 007811 8 TYGVPSVAFGVDAAFSYKYNQQYG-ICNKDGLAICPGFSTTHVIPF--VEGEP-VYRGSCRTNIGGYHITDYLKQLLSL 82 (589)
Q Consensus 8 ~f~vPsv~~~~qsvLSlya~g~~~-~~~~tGLVVD~G~~~T~VvPV--~eG~~-l~~a~~rl~~GG~~lt~~L~~lL~~ 82 (589)
.-|++-+.+.+.+..+.++++... ....+-+|+|+|++++.|.-+ .+|.. +.....-.++||.+++..|...+..
T Consensus 155 ~AGl~v~~li~EptAAAl~y~~~~~~~~~~vlV~D~Gggt~dvsv~~~~~~~~~v~~~~gd~~lGG~d~D~~l~~~~~~ 233 (595)
T TIGR02350 155 IAGLEVLRIINEPTAAALAYGLDKSKKDEKILVFDLGGGTFDVSILEIGDGVFEVLSTAGDTHLGGDDFDQRIIDWLAD 233 (595)
T ss_pred HcCCceEEEecchHHHHHHHhhcccCCCcEEEEEECCCCeEEEEEEEecCCeEEEEEecCCcccCchhHHHHHHHHHHH
Confidence 347788889999988888877321 123568999999999988654 23322 1222234579999999988877654
No 49
>PF06406 StbA: StbA protein; InterPro: IPR009440 This entry represents bacterial plasmid segregation proteins ParM and StbA []. They are involved in the control of plasmid partition and required for the accurate segregation of the plasmid. ; PDB: 3IKY_C 3IKU_I 2ZGZ_B 1MWM_A 1MWK_A 2ZHC_A 2ZGY_A 2QU4_A.
Probab=85.65 E-value=0.7 Score=48.97 Aligned_cols=75 Identities=19% Similarity=0.016 Sum_probs=51.9
Q ss_pred hcCCCeEeeehhHHHhhhhhccCCCCCCcceeeeCCCcceEEEeecCCccccccce-ecccccchhHHHHHHhhhc
Q 007811 8 TYGVPSVAFGVDAAFSYKYNQQYGICNKDGLAICPGFSTTHVIPFVEGEPVYRGSC-RTNIGGYHITDYLKQLLSL 82 (589)
Q Consensus 8 ~f~vPsv~~~~qsvLSlya~g~~~~~~~tGLVVD~G~~~T~VvPV~eG~~l~~a~~-rl~~GG~~lt~~L~~lL~~ 82 (589)
.|++-.+.+.+|++-++|..-..-....+.||||+|+.+|.++-|..+......+. ..++|-..+.+-+.+.|..
T Consensus 137 ~i~I~~V~V~PQ~~~A~~~~~~~~~~~~~~lVVDIGG~T~Dv~~v~~~~~~~~~~~~~~~~Gvs~~~~~I~~~l~~ 212 (318)
T PF06406_consen 137 TITIKDVEVFPQSVGAVFDALMDLDEDESVLVVDIGGRTTDVAVVRGGLPDISKCSGTPEIGVSDLYDAIAQALRS 212 (318)
T ss_dssp --EEEEEEEEESSHHHHHHHHHTS-TTSEEEEEEE-SS-EEEEEEEGGG--EEEEEEETTSSTHHHHHHHHHHTT-
T ss_pred eEEEeeEEEEcccHHHHHHHHHhhcccCcEEEEEcCCCeEEeeeecCCccccchhccCCchhHHHHHHHHHHHHHH
Confidence 45677899999999888876311001256899999999999998887766555554 4578999999999998876
No 50
>PRK00290 dnaK molecular chaperone DnaK; Provisional
Probab=85.56 E-value=1.2 Score=51.75 Aligned_cols=76 Identities=14% Similarity=0.038 Sum_probs=52.7
Q ss_pred hhcCCCeEeeehhHHHhhhhhccCCCCCCcceeeeCCCcceEEEeec--CCcc-ccccceecccccchhHHHHHHhhhc
Q 007811 7 ETYGVPSVAFGVDAAFSYKYNQQYGICNKDGLAICPGFSTTHVIPFV--EGEP-VYRGSCRTNIGGYHITDYLKQLLSL 82 (589)
Q Consensus 7 E~f~vPsv~~~~qsvLSlya~g~~~~~~~tGLVVD~G~~~T~VvPV~--eG~~-l~~a~~rl~~GG~~lt~~L~~lL~~ 82 (589)
+.-|++-+.+.+.+..+.++++.......+-+|+|+|.++|.|.-+- .|.. +.....-.++||.+++..|...+..
T Consensus 157 ~~AGl~v~~li~EptAAAl~y~~~~~~~~~vlV~D~GggT~dvsv~~~~~~~~~vla~~gd~~lGG~d~D~~l~~~~~~ 235 (627)
T PRK00290 157 KIAGLEVLRIINEPTAAALAYGLDKKGDEKILVYDLGGGTFDVSILEIGDGVFEVLSTNGDTHLGGDDFDQRIIDYLAD 235 (627)
T ss_pred HHcCCceEEEecchHHHHHHhhhccCCCCEEEEEECCCCeEEEEEEEEeCCeEEEEEecCCCCcChHHHHHHHHHHHHH
Confidence 34577888899999988888873211236789999999999886543 2222 2222334689999999988877654
No 51
>TIGR02261 benz_CoA_red_D benzoyl-CoA reductase, bcr type, subunit D. This model describes the D subunit of benzoyl-CoA reductase, a 4-subunit enzyme. Many aromatic compounds are metabolized by way of benzoyl-CoA. This family shows sequence similarity to the A subunit (TIGR02259) and to the 2-hydroxyglutaryl-CoA dehydratase alpha chain.
Probab=85.42 E-value=0.5 Score=48.97 Aligned_cols=50 Identities=24% Similarity=0.377 Sum_probs=40.9
Q ss_pred CCeEEecCCCCCCChHHHHHHHHHhhcCCCCCeEEEeCCCCccceeechhhhc
Q 007811 505 SSILMTGGCCLFPGMSERLEAGIRMIRPCGAPIKVVRALDPVLDAWRGASVYA 557 (589)
Q Consensus 505 ~NIvLtGG~S~~~Gf~eRL~~EL~~l~p~~~~v~V~~~~d~~~~aW~Ggsila 557 (589)
.+|+++||.+.-+||...|..+|... ...+.|..+++|++..-+||++++
T Consensus 213 ~~v~~~GGva~n~~~~~~le~~l~~~---~~~~~v~~~~~~q~~gAlGAAl~~ 262 (262)
T TIGR02261 213 GTVLCTGGLALDAGLLEALKDAIQEA---KMAVAAENHPDAIYAGAIGAALWG 262 (262)
T ss_pred CcEEEECcccccHHHHHHHHHHhccC---CcceEecCCCcchHHHHHHHHHcC
Confidence 46999999999999999999998532 133556668899999999999875
No 52
>PTZ00400 DnaK-type molecular chaperone; Provisional
Probab=85.01 E-value=0.61 Score=54.49 Aligned_cols=86 Identities=17% Similarity=0.197 Sum_probs=54.4
Q ss_pred eEEEeCceeccccccCcCCCCCCCCCCCcchhHHHHhhcCCCCChhhhHhhcCCeEEecCCCCCCChHHHHHHHHHhhcC
Q 007811 453 FQIVLGVERFRCPEILFRPNWVGIDQVGLDEMTGVSIRRLPTKDEDLEQRLTSSILMTGGCCLFPGMSERLEAGIRMIRP 532 (589)
Q Consensus 453 ~~I~lg~ERf~~pE~LF~Psl~g~~~~GL~e~I~~sI~~~~~c~~d~r~~L~~NIvLtGG~S~~~Gf~eRL~~EL~~l~p 532 (589)
..+.|+.+.|. -++.|-+ ..+.+.|..++... .+.+.-...|+|+||+|.+|++.+.|..-+..
T Consensus 330 ~~~~itR~efe---~l~~~l~-----~~~~~~i~~~L~~a-----~~~~~~i~~ViLvGGssriP~v~~~l~~~f~~--- 393 (663)
T PTZ00400 330 LQIKLSRAKLE---ELTHDLL-----KKTIEPCEKCIKDA-----GVKKDELNDVILVGGMTRMPKVSETVKKIFGK--- 393 (663)
T ss_pred EEEEECHHHHH---HHHHHHH-----HHHHHHHHHHHHHc-----CCCHHHCcEEEEECCccCChHHHHHHHHHhCC---
Confidence 35566655552 3343321 23455566666532 22233368899999999999999998776531
Q ss_pred CCCCeEEEeCCCCccceeechhhhccc
Q 007811 533 CGAPIKVVRALDPVLDAWRGASVYATK 559 (589)
Q Consensus 533 ~~~~v~V~~~~d~~~~aW~Ggsilasl 559 (589)
.+....+|..++=.||++.|..
T Consensus 394 -----~~~~~~npdeaVA~GAAi~aa~ 415 (663)
T PTZ00400 394 -----EPSKGVNPDEAVAMGAAIQAGV 415 (663)
T ss_pred -----CcccCCCCccceeeccHHHHHh
Confidence 1233457778888999998854
No 53
>COG4820 EutJ Ethanolamine utilization protein, possible chaperonin [Amino acid transport and metabolism]
Probab=84.50 E-value=0.71 Score=46.04 Aligned_cols=61 Identities=23% Similarity=0.259 Sum_probs=51.4
Q ss_pred hhhcCCCeEeeehhHHHhhhhhccCCCCCCcceeeeCCCcceEEEeecCCccccccceecccccchhH
Q 007811 6 FETYGVPSVAFGVDAAFSYKYNQQYGICNKDGLAICPGFSTTHVIPFVEGEPVYRGSCRTNIGGYHIT 73 (589)
Q Consensus 6 FE~f~vPsv~~~~qsvLSlya~g~~~~~~~tGLVVD~G~~~T~VvPV~eG~~l~~a~~rl~~GG~~lt 73 (589)
.|+-+.-.+++...+..+.|--+ ..+|.|||+|.++|-|.-+-.|.++..+ --+.||.|+|
T Consensus 116 iESAGlevl~vlDEPTAaa~vL~-----l~dg~VVDiGGGTTGIsi~kkGkViy~A--DEpTGGtHmt 176 (277)
T COG4820 116 IESAGLEVLHVLDEPTAAADVLQ-----LDDGGVVDIGGGTTGISIVKKGKVIYSA--DEPTGGTHMT 176 (277)
T ss_pred ecccCceeeeecCCchhHHHHhc-----cCCCcEEEeCCCcceeEEEEcCcEEEec--cCCCCceeEE
Confidence 46667777888888888888787 8899999999999999999999999854 4478999876
No 54
>PLN03184 chloroplast Hsp70; Provisional
Probab=84.07 E-value=1.4 Score=51.53 Aligned_cols=75 Identities=17% Similarity=0.066 Sum_probs=52.5
Q ss_pred hcCCCeEeeehhHHHhhhhhccCCCCCCcceeeeCCCcceEEEeec--CCcc-ccccceecccccchhHHHHHHhhhc
Q 007811 8 TYGVPSVAFGVDAAFSYKYNQQYGICNKDGLAICPGFSTTHVIPFV--EGEP-VYRGSCRTNIGGYHITDYLKQLLSL 82 (589)
Q Consensus 8 ~f~vPsv~~~~qsvLSlya~g~~~~~~~tGLVVD~G~~~T~VvPV~--eG~~-l~~a~~rl~~GG~~lt~~L~~lL~~ 82 (589)
.-++..+.+.+.+..+.+++|........-+|+|+|.+++.|.-+- +|.. +.....-.++||.+++..|.+.+..
T Consensus 197 ~AGl~v~~li~EPtAAAlayg~~~~~~~~vlV~DlGgGT~DvSi~~~~~~~~eVla~~gd~~LGG~dfD~~L~~~~~~ 274 (673)
T PLN03184 197 IAGLEVLRIINEPTAASLAYGFEKKSNETILVFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHLGGDDFDKRIVDWLAS 274 (673)
T ss_pred HCCCCeEEEeCcHHHHHHHhhcccCCCCEEEEEECCCCeEEEEEEEecCCEEEEEEecCCCccCHHHHHHHHHHHHHH
Confidence 3477888899999999888873211234689999999999886543 2321 1222234689999999999877754
No 55
>PRK13411 molecular chaperone DnaK; Provisional
Probab=83.89 E-value=0.48 Score=55.21 Aligned_cols=87 Identities=17% Similarity=0.206 Sum_probs=55.0
Q ss_pred eEEEeCceeccccccCcCCCCCCCCCCCcchhHHHHhhcCCCCChhhhHhhcCCeEEecCCCCCCChHHHHHHHHHhhcC
Q 007811 453 FQIVLGVERFRCPEILFRPNWVGIDQVGLDEMTGVSIRRLPTKDEDLEQRLTSSILMTGGCCLFPGMSERLEAGIRMIRP 532 (589)
Q Consensus 453 ~~I~lg~ERf~~pE~LF~Psl~g~~~~GL~e~I~~sI~~~~~c~~d~r~~L~~NIvLtGG~S~~~Gf~eRL~~EL~~l~p 532 (589)
..+.|+.+.| |-|+.|-+ ..+.+.|..++.. ..+...-...|+|+||+|.+|++.+.|..-+..
T Consensus 290 ~~~~itR~~f---e~l~~~l~-----~~~~~~i~~~L~~-----a~~~~~~id~ViLvGGssriP~v~~~l~~~f~~--- 353 (653)
T PRK13411 290 LEMELTRAKF---EELTKDLV-----EATIEPMQQALKD-----AGLKPEDIDRVILVGGSTRIPAVQEAIQKFFGG--- 353 (653)
T ss_pred EEEEEcHHHH---HHHHHHHH-----HHHHHHHHHHHHH-----cCCCHHHCcEEEEECCCCCcchHHHHHHHHcCC---
Confidence 4556666655 34444421 2345566666652 223334467999999999999999999765421
Q ss_pred CCCCeEEEeCCCCccceeechhhhccc
Q 007811 533 CGAPIKVVRALDPVLDAWRGASVYATK 559 (589)
Q Consensus 533 ~~~~v~V~~~~d~~~~aW~Ggsilasl 559 (589)
..+....+|..++=.||++.|..
T Consensus 354 ----~~~~~~~npdeaVA~GAAi~aa~ 376 (653)
T PRK13411 354 ----KQPDRSVNPDEAVALGAAIQAGV 376 (653)
T ss_pred ----cCcCCCCCchHHHHHHHHHHHHh
Confidence 12334456777888899988753
No 56
>TIGR01174 ftsA cell division protein FtsA. This bacterial cell division protein interacts with FtsZ, the bacterial homolog of tubulin. It is an ATP-binding protein and shows structural similarities to actin and heat shock cognate protein 70.
Probab=83.59 E-value=0.39 Score=51.72 Aligned_cols=24 Identities=29% Similarity=0.458 Sum_probs=21.5
Q ss_pred CC-eEEecCCCCCCChHHHHHHHHH
Q 007811 505 SS-ILMTGGCCLFPGMSERLEAGIR 528 (589)
Q Consensus 505 ~N-IvLtGG~S~~~Gf~eRL~~EL~ 528 (589)
.+ ||||||+|.+||+.+.+.+.+.
T Consensus 315 ~~gIvLtGG~S~ipgi~~~l~~~~~ 339 (371)
T TIGR01174 315 NGGIVLTGGGAQLEGIVELAEKVFD 339 (371)
T ss_pred CCEEEEeChHHcccCHHHHHHHHhC
Confidence 45 9999999999999999988874
No 57
>PRK13410 molecular chaperone DnaK; Provisional
Probab=83.35 E-value=1.7 Score=50.80 Aligned_cols=75 Identities=16% Similarity=0.028 Sum_probs=51.7
Q ss_pred hcCCCeEeeehhHHHhhhhhccCCCCCCcceeeeCCCcceEEEeec--CCcc-ccccceecccccchhHHHHHHhhhc
Q 007811 8 TYGVPSVAFGVDAAFSYKYNQQYGICNKDGLAICPGFSTTHVIPFV--EGEP-VYRGSCRTNIGGYHITDYLKQLLSL 82 (589)
Q Consensus 8 ~f~vPsv~~~~qsvLSlya~g~~~~~~~tGLVVD~G~~~T~VvPV~--eG~~-l~~a~~rl~~GG~~lt~~L~~lL~~ 82 (589)
.=|+..+.+.+.+..+.+++|.......+-+|+|+|++++.|.-+- .|.. +.....-.++||.+++..|...|..
T Consensus 160 ~AGl~v~~li~EPtAAAlayg~~~~~~~~vlV~DlGgGT~Dvsv~~~~~g~~~V~at~gd~~lGG~dfD~~l~~~l~~ 237 (668)
T PRK13410 160 IAGLEVERILNEPTAAALAYGLDRSSSQTVLVFDLGGGTFDVSLLEVGNGVFEVKATSGDTQLGGNDFDKRIVDWLAE 237 (668)
T ss_pred HcCCCeEEEecchHHHHHHhccccCCCCEEEEEECCCCeEEEEEEEEcCCeEEEEEeecCCCCChhHHHHHHHHHHHH
Confidence 3467778889999988888873221235689999999999886543 3422 2222233579999999988776654
No 58
>TIGR03192 benz_CoA_bzdQ benzoyl-CoA reductase, bzd-type, Q subunit. Members of this family are the Q subunit of one of two related types of four-subunit ATP-dependent benzoyl-CoA reductase. This enzyme system catalyzes the dearomatization of benzoyl-CoA, a common intermediate in pathways for the degradation for a number of different aromatic compounds, such as phenol and toluene.
Probab=82.95 E-value=0.58 Score=49.21 Aligned_cols=67 Identities=19% Similarity=0.283 Sum_probs=48.0
Q ss_pred CCcchhHHHHhhcCCCCChhhhHhhcCCeEEecCCCCCCChHHHHHHHHHhhcCCCCCeEEE-eCCCCccceeechhhhc
Q 007811 479 VGLDEMTGVSIRRLPTKDEDLEQRLTSSILMTGGCCLFPGMSERLEAGIRMIRPCGAPIKVV-RALDPVLDAWRGASVYA 557 (589)
Q Consensus 479 ~GL~e~I~~sI~~~~~c~~d~r~~L~~NIvLtGG~S~~~Gf~eRL~~EL~~l~p~~~~v~V~-~~~d~~~~aW~Ggsila 557 (589)
.||+..|.+-+. ..--|..+-..|+++||.+.-+||...|.+.|. ..|. .+++|++..=+|++++|
T Consensus 220 aGl~~sia~rv~-----~~~~~~~i~~~v~~~GGva~N~~l~~al~~~Lg--------~~v~~~p~~p~~~GAlGAAL~A 286 (293)
T TIGR03192 220 AAYCQAMAERVV-----SLLERIGVEEGFFITGGIAKNPGVVKRIERILG--------IKAVDTKIDSQIAGALGAALFG 286 (293)
T ss_pred HHHHHHHHHHHH-----HHhcccCCCCCEEEECcccccHHHHHHHHHHhC--------CCceeCCCCccHHHHHHHHHHH
Confidence 466666654442 111123455689999999999999999999883 2233 36789999999999998
Q ss_pred c
Q 007811 558 T 558 (589)
Q Consensus 558 s 558 (589)
.
T Consensus 287 ~ 287 (293)
T TIGR03192 287 Y 287 (293)
T ss_pred H
Confidence 4
No 59
>PTZ00186 heat shock 70 kDa precursor protein; Provisional
Probab=82.76 E-value=0.56 Score=54.76 Aligned_cols=50 Identities=16% Similarity=0.269 Sum_probs=37.7
Q ss_pred hhcCCeEEecCCCCCCChHHHHHHHHHhhcCCCCCeEEEeCCCCccceeechhhhccc
Q 007811 502 RLTSSILMTGGCCLFPGMSERLEAGIRMIRPCGAPIKVVRALDPVLDAWRGASVYATK 559 (589)
Q Consensus 502 ~L~~NIvLtGG~S~~~Gf~eRL~~EL~~l~p~~~~v~V~~~~d~~~~aW~Ggsilasl 559 (589)
.-...|+|+||+|.+|++.+.|..-+.. . +....+|..++=+||+++|..
T Consensus 352 ~dId~VvLVGGssriP~V~~~l~~~fg~-~-------~~~~~nPdeaVA~GAAi~a~~ 401 (657)
T PTZ00186 352 KEINDVVLVGGMTRMPKVVEEVKKFFQK-D-------PFRGVNPDEAVALGAATLGGV 401 (657)
T ss_pred hhCCEEEEECCcccChHHHHHHHHHhCC-C-------ccccCCCchHHHHhHHHHHHH
Confidence 3457899999999999999999876532 1 123456778888999998863
No 60
>COG4972 PilM Tfp pilus assembly protein, ATPase PilM [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=81.81 E-value=2.1 Score=45.61 Aligned_cols=67 Identities=24% Similarity=0.338 Sum_probs=52.6
Q ss_pred ceeeeCCCcceEEEeecCCccccccceecccccchhHHHHHHhhhccCCCCCCCCCHHHHHHHHhcccccccChHHHHH
Q 007811 37 GLAICPGFSTTHVIPFVEGEPVYRGSCRTNIGGYHITDYLKQLLSLKHPQHMTKLTWEKVEDLKMEHCYIAPDYFSEAQ 115 (589)
Q Consensus 37 GLVVD~G~~~T~VvPV~eG~~l~~a~~rl~~GG~~lt~~L~~lL~~k~~~~~~~~~~~~v~~IKE~~CyVa~Dy~~El~ 115 (589)
.+|+|+|+..|.++-+++|.++. .+.+++||+++|.-+.+... ++.+...+||.... .+.||..++.
T Consensus 195 vav~~Igat~s~l~vi~~gk~ly--~r~~~~g~~Qlt~~i~r~~~---------L~~~~a~~~k~~~~-~P~~y~~~vl 261 (354)
T COG4972 195 VAVFDIGATSSELLVIQDGKILY--TREVPVGTDQLTQEIQRAYS---------LTEEKAEEIKRGGT-LPTDYGSEVL 261 (354)
T ss_pred heeeeecccceEEEEEECCeeee--EeeccCcHHHHHHHHHHHhC---------CChhHhHHHHhCCC-CCCchhHHHH
Confidence 45999999999999999999998 78999999999999988764 34556667765543 3446766653
No 61
>PTZ00186 heat shock 70 kDa precursor protein; Provisional
Probab=81.64 E-value=2.8 Score=49.00 Aligned_cols=75 Identities=11% Similarity=-0.074 Sum_probs=52.2
Q ss_pred hcCCCeEeeehhHHHhhhhhccCCCCCCcceeeeCCCcceEEEeec--CCccc-cccceecccccchhHHHHHHhhhc
Q 007811 8 TYGVPSVAFGVDAAFSYKYNQQYGICNKDGLAICPGFSTTHVIPFV--EGEPV-YRGSCRTNIGGYHITDYLKQLLSL 82 (589)
Q Consensus 8 ~f~vPsv~~~~qsvLSlya~g~~~~~~~tGLVVD~G~~~T~VvPV~--eG~~l-~~a~~rl~~GG~~lt~~L~~lL~~ 82 (589)
.-|+.-+.+.+.+..+.+++|........-+|+|+|.+++.|.-+- +|..- .....-..+||.+++..|...+..
T Consensus 185 ~AGl~v~rlInEPtAAAlayg~~~~~~~~vlV~DlGGGT~DvSil~~~~g~~~V~at~Gd~~LGG~DfD~~l~~~~~~ 262 (657)
T PTZ00186 185 IAGLNVIRVVNEPTAAALAYGMDKTKDSLIAVYDLGGGTFDISVLEIAGGVFEVKATNGDTHLGGEDFDLALSDYILE 262 (657)
T ss_pred HcCCCeEEEEcChHHHHHHHhccCCCCCEEEEEECCCCeEEEEEEEEeCCEEEEEEecCCCCCCchhHHHHHHHHHHH
Confidence 3477778899999999988873211134689999999999886543 55332 222234589999998888776654
No 62
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=80.52 E-value=11 Score=44.09 Aligned_cols=41 Identities=20% Similarity=0.442 Sum_probs=24.3
Q ss_pred hhhHHHHHhhcCCCCCchhhhHHHHHHHHHHHhhhhcCCCCCC
Q 007811 387 EDWQLYKLMSRDNDDDDEEMDENEAELARISARLQEVDPTFVP 429 (589)
Q Consensus 387 ~dw~vy~~i~~~~~~~~~d~e~~~~~l~~le~~L~~~Dp~F~~ 429 (589)
..|.||-.-.+.. -.-+++-.+-++.+|+.+|+++.-.-+.
T Consensus 429 qe~iv~~nak~~q--l~~eletLn~k~qqls~kl~Dvr~~~tt 469 (1118)
T KOG1029|consen 429 QEWIVYLNAKKKQ--LQQELETLNFKLQQLSGKLQDVRVDITT 469 (1118)
T ss_pred HHHHHHHHHHHHH--HHHHHHHHHHHHHHHhhhhhhheeccch
Confidence 4888883322211 1235556666777777777777666554
No 63
>PRK05183 hscA chaperone protein HscA; Provisional
Probab=80.22 E-value=0.77 Score=53.19 Aligned_cols=48 Identities=21% Similarity=0.252 Sum_probs=36.9
Q ss_pred cCCeEEecCCCCCCChHHHHHHHHHhhcCCCCCeEEEeCCCCccceeechhhhccc
Q 007811 504 TSSILMTGGCCLFPGMSERLEAGIRMIRPCGAPIKVVRALDPVLDAWRGASVYATK 559 (589)
Q Consensus 504 ~~NIvLtGG~S~~~Gf~eRL~~EL~~l~p~~~~v~V~~~~d~~~~aW~Ggsilasl 559 (589)
...|+|+||+|.+|++.+.|..-+.. .+....+|..++=.||++.|..
T Consensus 329 i~~ViLvGGssriP~v~~~l~~~fg~--------~~~~~~npdeaVA~GAAi~a~~ 376 (616)
T PRK05183 329 VKEVVMVGGSTRVPLVREAVGEFFGR--------TPLTSIDPDKVVAIGAAIQADI 376 (616)
T ss_pred CCEEEEECCcccChHHHHHHHHHhcc--------CcCcCCCchHHHHHHHHHHHHH
Confidence 57899999999999999998776532 1223457778888899988763
No 64
>PRK01433 hscA chaperone protein HscA; Provisional
Probab=79.96 E-value=0.98 Score=52.14 Aligned_cols=83 Identities=16% Similarity=0.286 Sum_probs=53.2
Q ss_pred EEEeCceeccccccCcCCCCCCCCCCCcchhHHHHhhcCCCCChhhhHhhcCCeEEecCCCCCCChHHHHHHHHHhhcCC
Q 007811 454 QIVLGVERFRCPEILFRPNWVGIDQVGLDEMTGVSIRRLPTKDEDLEQRLTSSILMTGGCCLFPGMSERLEAGIRMIRPC 533 (589)
Q Consensus 454 ~I~lg~ERf~~pE~LF~Psl~g~~~~GL~e~I~~sI~~~~~c~~d~r~~L~~NIvLtGG~S~~~Gf~eRL~~EL~~l~p~ 533 (589)
.+.|+.+.| |-++.|-+ ..+...|..++... . ..=...|+|+||+|.+|.+.+.|..-+.
T Consensus 274 ~~~itr~ef---e~l~~~l~-----~~~~~~i~~~L~~a---~----~~~Id~ViLvGGssriP~v~~~l~~~f~----- 333 (595)
T PRK01433 274 NISINKQTL---EQLILPLV-----ERTINIAQECLEQA---G----NPNIDGVILVGGATRIPLIKDELYKAFK----- 333 (595)
T ss_pred eEEEcHHHH---HHHHHHHH-----HHHHHHHHHHHhhc---C----cccCcEEEEECCcccChhHHHHHHHHhC-----
Confidence 556666555 23333321 22445556666432 1 1225889999999999999998886652
Q ss_pred CCCeEEEeCCCCccceeechhhhccc
Q 007811 534 GAPIKVVRALDPVLDAWRGASVYATK 559 (589)
Q Consensus 534 ~~~v~V~~~~d~~~~aW~Ggsilasl 559 (589)
..+....+|..++=.||++.|..
T Consensus 334 ---~~~~~~~npdeaVA~GAAi~a~~ 356 (595)
T PRK01433 334 ---VDILSDIDPDKAVVWGAALQAEN 356 (595)
T ss_pred ---CCceecCCchHHHHHHHHHHHHH
Confidence 12344567888888999998864
No 65
>PRK13410 molecular chaperone DnaK; Provisional
Probab=79.60 E-value=0.88 Score=53.24 Aligned_cols=66 Identities=17% Similarity=0.211 Sum_probs=43.5
Q ss_pred cchhHHHHhhcCCCCChhhhHhhcCCeEEecCCCCCCChHHHHHHHHHhhcCCCCCeEEEeCCCCccceeechhhhccc
Q 007811 481 LDEMTGVSIRRLPTKDEDLEQRLTSSILMTGGCCLFPGMSERLEAGIRMIRPCGAPIKVVRALDPVLDAWRGASVYATK 559 (589)
Q Consensus 481 L~e~I~~sI~~~~~c~~d~r~~L~~NIvLtGG~S~~~Gf~eRL~~EL~~l~p~~~~v~V~~~~d~~~~aW~Ggsilasl 559 (589)
+.+.|..++.. ..+.+.-...|+|+||+|.+|.+.+.|..-+ +. .+....+|..++=+||++.|..
T Consensus 311 ~~~~i~~~L~~-----ag~~~~dId~VvLVGGssRiP~V~~~l~~~f----g~----~~~~~~npdeaVA~GAAi~aa~ 376 (668)
T PRK13410 311 LLRPVKRALKD-----AGLSPEDIDEVVLVGGSTRMPMVQQLVRTLI----PR----EPNQNVNPDEVVAVGAAIQAGI 376 (668)
T ss_pred HHHHHHHHHHH-----cCCChhhCcEEEEECCccccHHHHHHHHHHc----CC----CcccCCCCchHHHHhHHHHHHh
Confidence 44555555542 2223344578999999999999999987643 21 1223346677888899988764
No 66
>PRK10719 eutA reactivating factor for ethanolamine ammonia lyase; Provisional
Probab=79.08 E-value=1.3 Score=49.42 Aligned_cols=55 Identities=22% Similarity=0.163 Sum_probs=40.4
Q ss_pred hhHHHhhhhhccC---CCCCCcceeeeCCCcceEEEeecCCccccccceecccccchhHH
Q 007811 18 VDAAFSYKYNQQY---GICNKDGLAICPGFSTTHVIPFVEGEPVYRGSCRTNIGGYHITD 74 (589)
Q Consensus 18 ~qsvLSlya~g~~---~~~~~tGLVVD~G~~~T~VvPV~eG~~l~~a~~rl~~GG~~lt~ 74 (589)
..++++-+|+|.. .-.....++||+|.++|+++-+.+|.++. ..-+++||+++|.
T Consensus 126 le~iva~~ASg~avLseEke~gVa~IDIGgGTT~iaVf~~G~l~~--T~~l~vGG~~IT~ 183 (475)
T PRK10719 126 LESIIAGKGAGAQTLSEERNTRVLNIDIGGGTANYALFDAGKVID--TACLNVGGRLIET 183 (475)
T ss_pred HHHhhhHHHhhHHHhhhhccCceEEEEeCCCceEEEEEECCEEEE--EEEEecccceEEE
Confidence 3444555555511 11245688999999999999999999888 6778999998773
No 67
>COG0443 DnaK Molecular chaperone [Posttranslational modification, protein turnover, chaperones]
Probab=78.85 E-value=3.5 Score=47.51 Aligned_cols=77 Identities=16% Similarity=0.036 Sum_probs=57.0
Q ss_pred hhhcCCCeEeeehhHHHhhhhhccCCCCCCcceeeeCCCcceEEEee--cCC-ccccccceecccccchhHHHHHHhhhc
Q 007811 6 FETYGVPSVAFGVDAAFSYKYNQQYGICNKDGLAICPGFSTTHVIPF--VEG-EPVYRGSCRTNIGGYHITDYLKQLLSL 82 (589)
Q Consensus 6 FE~f~vPsv~~~~qsvLSlya~g~~~~~~~tGLVVD~G~~~T~VvPV--~eG-~~l~~a~~rl~~GG~~lt~~L~~lL~~ 82 (589)
...-+++-+.+.+.+..++|++|.......+-||+|+|.|++.|.=| -+| +.+........+||.+++..|...+..
T Consensus 143 ~~iaGl~vlrlinEPtAAAlayg~~~~~~~~vlV~DlGGGTfDvSll~~~~g~~ev~at~gd~~LGGddfD~~l~~~~~~ 222 (579)
T COG0443 143 ARIAGLNVLRLINEPTAAALAYGLDKGKEKTVLVYDLGGGTFDVSLLEIGDGVFEVLATGGDNHLGGDDFDNALIDYLVM 222 (579)
T ss_pred HHHcCCCeEEEecchHHHHHHhHhccCCCcEEEEEEcCCCCEEEEEEEEcCCEEEEeecCCCcccCchhHHHHHHHHHHH
Confidence 34558888999999999999999432234688999999999987644 334 223445667789999999888666543
No 68
>TIGR00241 CoA_E_activ CoA-substrate-specific enzyme activase, putative. This domain may be involved in generating or regenerating the active sites of enzymes related to (R)-2-hydroxyglutaryl-CoA dehydratase and benzoyl-CoA reductase.
Probab=77.63 E-value=1.6 Score=44.47 Aligned_cols=43 Identities=28% Similarity=0.468 Sum_probs=36.3
Q ss_pred CeEEecCCCCCCChHHHHHHHHHhhcCCCCCeEEEeCCCCccceeechhhh
Q 007811 506 SILMTGGCCLFPGMSERLEAGIRMIRPCGAPIKVVRALDPVLDAWRGASVY 556 (589)
Q Consensus 506 NIvLtGG~S~~~Gf~eRL~~EL~~l~p~~~~v~V~~~~d~~~~aW~Ggsil 556 (589)
.|+|+||.+..+++.+.|...|. +.|..++++.+.+=+|++++
T Consensus 206 ~Vvl~GGva~n~~l~~~l~~~lg--------~~v~~~~~~~~~~AlGaAl~ 248 (248)
T TIGR00241 206 PIVFTGGVSKNKGLVKALEKKLG--------MKVITPPEPQIVGAVGAALL 248 (248)
T ss_pred CEEEECccccCHHHHHHHHHHhC--------CcEEcCCCccHHHHHHHHhC
Confidence 79999999999999999988872 45677888888888888764
No 69
>PRK11678 putative chaperone; Provisional
Probab=77.24 E-value=4 Score=45.57 Aligned_cols=70 Identities=17% Similarity=0.075 Sum_probs=49.2
Q ss_pred hhhcCCCeEeeehhHHHhhhhhccCCCCCCcceeeeCCCcceEEEeecC--C---------ccccccceecccccchhHH
Q 007811 6 FETYGVPSVAFGVDAAFSYKYNQQYGICNKDGLAICPGFSTTHVIPFVE--G---------EPVYRGSCRTNIGGYHITD 74 (589)
Q Consensus 6 FE~f~vPsv~~~~qsvLSlya~g~~~~~~~tGLVVD~G~~~T~VvPV~e--G---------~~l~~a~~rl~~GG~~lt~ 74 (589)
.+.-+++.+.+.+.+..+.++++.......+-||+|+|.+++.+.-|-- + .++.++- ..+||.+++.
T Consensus 180 a~~AG~~~v~li~EPtAAAl~y~~~~~~~~~vlV~D~GGGT~D~Svv~~~~~~~~~~~r~~~vla~~G--~~lGG~DfD~ 257 (450)
T PRK11678 180 AKRAGFKDVEFQFEPVAAGLDFEATLTEEKRVLVVDIGGGTTDCSMLLMGPSWRGRADRSASLLGHSG--QRIGGNDLDI 257 (450)
T ss_pred HHHcCCCEEEEEcCHHHHHHHhccccCCCCeEEEEEeCCCeEEEEEEEecCcccccCCcceeEEecCC--CCCChHHHHH
Confidence 3556889999999999999998732112356899999999987764421 1 1222221 4699999999
Q ss_pred HHH
Q 007811 75 YLK 77 (589)
Q Consensus 75 ~L~ 77 (589)
.|.
T Consensus 258 ~L~ 260 (450)
T PRK11678 258 ALA 260 (450)
T ss_pred HHH
Confidence 885
No 70
>PLN03184 chloroplast Hsp70; Provisional
Probab=76.75 E-value=1.4 Score=51.70 Aligned_cols=48 Identities=19% Similarity=0.207 Sum_probs=36.1
Q ss_pred cCCeEEecCCCCCCChHHHHHHHHHhhcCCCCCeEEEeCCCCccceeechhhhccc
Q 007811 504 TSSILMTGGCCLFPGMSERLEAGIRMIRPCGAPIKVVRALDPVLDAWRGASVYATK 559 (589)
Q Consensus 504 ~~NIvLtGG~S~~~Gf~eRL~~EL~~l~p~~~~v~V~~~~d~~~~aW~Ggsilasl 559 (589)
...|+|+||+|.+|++.++|..-+.. . +....+|..++=.||++.|..
T Consensus 366 Id~ViLvGGssriP~V~~~i~~~fg~------~--~~~~~npdeaVA~GAAi~aa~ 413 (673)
T PLN03184 366 IDEVILVGGSTRIPAVQELVKKLTGK------D--PNVTVNPDEVVALGAAVQAGV 413 (673)
T ss_pred ccEEEEECCccccHHHHHHHHHHhCC------C--cccccCcchHHHHHHHHHHHH
Confidence 48999999999999999999776521 1 122345677888898888753
No 71
>PF00012 HSP70: Hsp70 protein; InterPro: IPR013126 Heat shock proteins, Hsp70 chaperones help to fold many proteins. Hsp70 assisted folding involves repeated cycles of substrate binding and release. Hsp70 activity is ATP dependent. Hsp70 proteins are made up of two regions: the amino terminus is the ATPase domain and the carboxyl terminus is the substrate binding region []. Hsp70 proteins have an average molecular weight of 70 kDa [, , ]. In most species,there are many proteins that belong to the hsp70 family. Some of these are only expressed under stress conditions (strictly inducible), while some are present in cells under normal growth conditions and are not heat-inducible (constitutive or cognate) [, ]. Hsp70 proteins can be found in different cellular compartments(nuclear, cytosolic, mitochondrial, endoplasmic reticulum, for example).; PDB: 2P32_D 3D2F_A 2QXL_A 3D2E_C 3C7N_A 3FE1_C 4ANI_C 2V7Y_A 2KHO_A 3DPQ_B ....
Probab=76.19 E-value=2.8 Score=47.77 Aligned_cols=76 Identities=17% Similarity=0.061 Sum_probs=51.5
Q ss_pred hhcCCCeEeeehhHHHhhhhhccC-CCCCCcceeeeCCCcceEEEee--cCCccc-cccceecccccchhHHHHHHhhhc
Q 007811 7 ETYGVPSVAFGVDAAFSYKYNQQY-GICNKDGLAICPGFSTTHVIPF--VEGEPV-YRGSCRTNIGGYHITDYLKQLLSL 82 (589)
Q Consensus 7 E~f~vPsv~~~~qsvLSlya~g~~-~~~~~tGLVVD~G~~~T~VvPV--~eG~~l-~~a~~rl~~GG~~lt~~L~~lL~~ 82 (589)
+.-|++.+.+.+.+..+.++++.. .....+-+|+|+|++++.|.-| ..|..- ........+||.+++..|...+..
T Consensus 159 ~~agl~~~~li~Ep~Aaa~~y~~~~~~~~~~vlv~D~Gggt~dvs~~~~~~~~~~v~~~~~~~~lGG~~~D~~l~~~~~~ 238 (602)
T PF00012_consen 159 ELAGLNVLRLINEPTAAALAYGLERSDKGKTVLVVDFGGGTFDVSVVEFSNGQFEVLATAGDNNLGGRDFDEALAEYLLE 238 (602)
T ss_dssp HHTT-EEEEEEEHHHHHHHHTTTTSSSSEEEEEEEEEESSEEEEEEEEEETTEEEEEEEEEETTCSHHHHHHHHHHHHHH
T ss_pred cccccccceeecccccccccccccccccccceeccccccceEeeeehhcccccccccccccccccccceecceeeccccc
Confidence 445677788888888887766521 1123578999999999977644 345332 223345689999999999887753
No 72
>PTZ00009 heat shock 70 kDa protein; Provisional
Probab=75.95 E-value=4.8 Score=47.02 Aligned_cols=76 Identities=16% Similarity=0.043 Sum_probs=52.0
Q ss_pred hhcCCCeEeeehhHHHhhhhhccC--CCCCCcceeeeCCCcceEEEee--cCCccc-cccceecccccchhHHHHHHhhh
Q 007811 7 ETYGVPSVAFGVDAAFSYKYNQQY--GICNKDGLAICPGFSTTHVIPF--VEGEPV-YRGSCRTNIGGYHITDYLKQLLS 81 (589)
Q Consensus 7 E~f~vPsv~~~~qsvLSlya~g~~--~~~~~tGLVVD~G~~~T~VvPV--~eG~~l-~~a~~rl~~GG~~lt~~L~~lL~ 81 (589)
+.-+++.+.+.+.+..+.++++.. .....+-+|+|+|++++.|.-| ..|..- .....-..+||.+++..|.+.+.
T Consensus 164 ~~AGl~v~~li~EptAAAl~y~~~~~~~~~~~vlv~D~GggT~dvsv~~~~~~~~~v~a~~gd~~lGG~d~D~~l~~~~~ 243 (653)
T PTZ00009 164 TIAGLNVLRIINEPTAAAIAYGLDKKGDGEKNVLIFDLGGGTFDVSLLTIEDGIFEVKATAGDTHLGGEDFDNRLVEFCV 243 (653)
T ss_pred HHcCCceeEEecchHHHHHHHhhhccCCCCCEEEEEECCCCeEEEEEEEEeCCeEEEEEecCCCCCChHHHHHHHHHHHH
Confidence 344778888999998888888721 1113468999999999987543 344322 21223358999999998887765
Q ss_pred c
Q 007811 82 L 82 (589)
Q Consensus 82 ~ 82 (589)
.
T Consensus 244 ~ 244 (653)
T PTZ00009 244 Q 244 (653)
T ss_pred H
Confidence 4
No 73
>PTZ00009 heat shock 70 kDa protein; Provisional
Probab=74.01 E-value=1.7 Score=50.64 Aligned_cols=87 Identities=16% Similarity=0.268 Sum_probs=52.8
Q ss_pred CeEEEeCceeccc-cccCcCCCCCCCCCCCcchhHHHHhhcCCCCChhhhHhhcCCeEEecCCCCCCChHHHHHHHHHhh
Q 007811 452 DFQIVLGVERFRC-PEILFRPNWVGIDQVGLDEMTGVSIRRLPTKDEDLEQRLTSSILMTGGCCLFPGMSERLEAGIRMI 530 (589)
Q Consensus 452 ~~~I~lg~ERf~~-pE~LF~Psl~g~~~~GL~e~I~~sI~~~~~c~~d~r~~L~~NIvLtGG~S~~~Gf~eRL~~EL~~l 530 (589)
+..+.|..+.|.- .+.+|. .+...|..++... . +...-...|+|+||+|.+|.+.+.|..-+..
T Consensus 294 d~~~~itR~~fe~l~~~l~~---------~~~~~i~~~L~~a---~--~~~~~i~~ViLvGGssriP~v~~~i~~~f~~- 358 (653)
T PTZ00009 294 DYNVTISRARFEELCGDYFR---------NTLQPVEKVLKDA---G--MDKRSVHEVVLVGGSTRIPKVQSLIKDFFNG- 358 (653)
T ss_pred eEEEEECHHHHHHHHHHHHH---------HHHHHHHHHHHHc---C--CCHHHCcEEEEECCCCCChhHHHHHHHHhCC-
Confidence 3566777666632 222322 2334555666421 2 2223357999999999999999998765421
Q ss_pred cCCCCCeEEEeCCCCccceeechhhhccc
Q 007811 531 RPCGAPIKVVRALDPVLDAWRGASVYATK 559 (589)
Q Consensus 531 ~p~~~~v~V~~~~d~~~~aW~Ggsilasl 559 (589)
..+....+|..++=.||++.|..
T Consensus 359 ------~~~~~~~npdeaVA~GAa~~aa~ 381 (653)
T PTZ00009 359 ------KEPCKSINPDEAVAYGAAVQAAI 381 (653)
T ss_pred ------CCCCCCCCcchHHhhhhhhhHHH
Confidence 11233446777888898887753
No 74
>PRK13411 molecular chaperone DnaK; Provisional
Probab=73.95 E-value=4.6 Score=47.18 Aligned_cols=74 Identities=14% Similarity=-0.007 Sum_probs=50.3
Q ss_pred cCCCeEeeehhHHHhhhhhccC-CCCCCcceeeeCCCcceEEEee--cCCcc-ccccceecccccchhHHHHHHhhhc
Q 007811 9 YGVPSVAFGVDAAFSYKYNQQY-GICNKDGLAICPGFSTTHVIPF--VEGEP-VYRGSCRTNIGGYHITDYLKQLLSL 82 (589)
Q Consensus 9 f~vPsv~~~~qsvLSlya~g~~-~~~~~tGLVVD~G~~~T~VvPV--~eG~~-l~~a~~rl~~GG~~lt~~L~~lL~~ 82 (589)
-|+..+.+.+.+..+.+++|.. .....+-+|+|+|.+++.|.-+ ..|.. +.....-..+||.+++..|...+..
T Consensus 159 AGl~v~~li~EPtAAAl~y~~~~~~~~~~vlV~DlGgGT~dvsi~~~~~~~~~V~at~gd~~LGG~dfD~~l~~~l~~ 236 (653)
T PRK13411 159 AGLEVLRIINEPTAAALAYGLDKQDQEQLILVFDLGGGTFDVSILQLGDGVFEVKATAGNNHLGGDDFDNCIVDWLVE 236 (653)
T ss_pred cCCCeEEEecchHHHHHHhcccccCCCCEEEEEEcCCCeEEEEEEEEeCCEEEEEEEecCCCcCHHHHHHHHHHHHHH
Confidence 3677788999999998888731 1113457999999999988633 23322 1212223479999999988877654
No 75
>PF00012 HSP70: Hsp70 protein; InterPro: IPR013126 Heat shock proteins, Hsp70 chaperones help to fold many proteins. Hsp70 assisted folding involves repeated cycles of substrate binding and release. Hsp70 activity is ATP dependent. Hsp70 proteins are made up of two regions: the amino terminus is the ATPase domain and the carboxyl terminus is the substrate binding region []. Hsp70 proteins have an average molecular weight of 70 kDa [, , ]. In most species,there are many proteins that belong to the hsp70 family. Some of these are only expressed under stress conditions (strictly inducible), while some are present in cells under normal growth conditions and are not heat-inducible (constitutive or cognate) [, ]. Hsp70 proteins can be found in different cellular compartments(nuclear, cytosolic, mitochondrial, endoplasmic reticulum, for example).; PDB: 2P32_D 3D2F_A 2QXL_A 3D2E_C 3C7N_A 3FE1_C 4ANI_C 2V7Y_A 2KHO_A 3DPQ_B ....
Probab=73.80 E-value=1.5 Score=50.13 Aligned_cols=85 Identities=26% Similarity=0.389 Sum_probs=54.1
Q ss_pred eEEEeCceeccccccCcCCCCCCCCCCCcchhHHHHhhcCCCCChhhhHhhcCCeEEecCCCCCCChHHHHHHHHHhhcC
Q 007811 453 FQIVLGVERFRCPEILFRPNWVGIDQVGLDEMTGVSIRRLPTKDEDLEQRLTSSILMTGGCCLFPGMSERLEAGIRMIRP 532 (589)
Q Consensus 453 ~~I~lg~ERf~~pE~LF~Psl~g~~~~GL~e~I~~sI~~~~~c~~d~r~~L~~NIvLtGG~S~~~Gf~eRL~~EL~~l~p 532 (589)
..+.|..+.|. -++.|-+ ..+..+|..++..+ . ....=...|+|+||+|.+|.+.+.|..-+ +
T Consensus 291 ~~~~itr~~fe---~l~~~~~-----~~~~~~i~~~l~~~---~--~~~~~i~~V~lvGG~sr~p~v~~~l~~~f----~ 353 (602)
T PF00012_consen 291 FSITITREEFE---ELCEPLL-----ERIIEPIEKALKDA---G--LKKEDIDSVLLVGGSSRIPYVQEALKELF----G 353 (602)
T ss_dssp EEEEEEHHHHH---HHTHHHH-----HHTHHHHHHHHHHT---T----GGGESEEEEESGGGGSHHHHHHHHHHT----T
T ss_pred cccccccceec---ccccccc-----cccccccccccccc---c--ccccccceeEEecCcccchhhhhhhhhcc----c
Confidence 56677766664 2333321 23566777777532 1 22333578999999999999998886654 3
Q ss_pred CCCCeEEEeCCCCccceeechhhhcc
Q 007811 533 CGAPIKVVRALDPVLDAWRGASVYAT 558 (589)
Q Consensus 533 ~~~~v~V~~~~d~~~~aW~Ggsilas 558 (589)
-.+....+|..++=.||+++|.
T Consensus 354 ----~~~~~~~~p~~aVA~GAa~~a~ 375 (602)
T PF00012_consen 354 ----KKISKSVNPDEAVARGAALYAA 375 (602)
T ss_dssp ----SEEB-SS-TTTHHHHHHHHHHH
T ss_pred ----cccccccccccccccccccchh
Confidence 1344556778888999999885
No 76
>COG1924 Activator of 2-hydroxyglutaryl-CoA dehydratase (HSP70-class ATPase domain) [Lipid metabolism]
Probab=72.72 E-value=1.9 Score=46.66 Aligned_cols=44 Identities=27% Similarity=0.280 Sum_probs=40.2
Q ss_pred eEEecCCCCCCChHHHHHHHHHhhcCCCCCeEEEeCCCCccceeechhhhcc
Q 007811 507 ILMTGGCCLFPGMSERLEAGIRMIRPCGAPIKVVRALDPVLDAWRGASVYAT 558 (589)
Q Consensus 507 IvLtGG~S~~~Gf~eRL~~EL~~l~p~~~~v~V~~~~d~~~~aW~Ggsilas 558 (589)
|||+||++...|+..-|.+.|. .+|+.|+.+++..-+||+++|+
T Consensus 346 iv~~GGva~n~av~~ale~~lg--------~~V~vP~~~ql~GAiGAAL~a~ 389 (396)
T COG1924 346 IVLQGGVALNKAVVRALEDLLG--------RKVIVPPYAQLMGAIGAALIAK 389 (396)
T ss_pred EEEECcchhhHHHHHHHHHHhC--------CeeecCCccchhhHHHHHHHHh
Confidence 9999999999999999888874 5788999999999999999986
No 77
>PF02541 Ppx-GppA: Ppx/GppA phosphatase family; InterPro: IPR003695 Exopolyphosphate phosphatase (Ppx) 3.6.1.11 from EC and guanosine pentaphosphate phosphatase (GppA) 3.6.1.40 from EC belong to the sugar kinase/actin/hsp70 superfamily [].; PDB: 3MDQ_A 1U6Z_A 1T6D_B 2J4R_B 1T6C_A 2FLO_B 3CER_B 3HI0_A.
Probab=72.21 E-value=2.7 Score=43.56 Aligned_cols=41 Identities=32% Similarity=0.502 Sum_probs=33.9
Q ss_pred CCcceeeeCCCcceEEEeecCCccccccceecccccchhHHHH
Q 007811 34 NKDGLAICPGFSTTHVIPFVEGEPVYRGSCRTNIGGYHITDYL 76 (589)
Q Consensus 34 ~~tGLVVD~G~~~T~VvPV~eG~~l~~a~~rl~~GG~~lt~~L 76 (589)
..+++|||+|.|+|.++-+-+|.+.. ...+++|.-.+++.+
T Consensus 111 ~~~~lviDIGGGStEl~~~~~~~~~~--~~Sl~lG~vrl~e~~ 151 (285)
T PF02541_consen 111 DKNGLVIDIGGGSTELILFENGKVVF--SQSLPLGAVRLTERF 151 (285)
T ss_dssp TSSEEEEEEESSEEEEEEEETTEEEE--EEEES--HHHHHHHH
T ss_pred cCCEEEEEECCCceEEEEEECCeeeE--eeeeehHHHHHHHHH
Confidence 46899999999999999999988776 778999998877766
No 78
>COG0849 ftsA Cell division ATPase FtsA [Cell division and chromosome partitioning]
Probab=68.84 E-value=2.6 Score=46.63 Aligned_cols=59 Identities=25% Similarity=0.437 Sum_probs=38.2
Q ss_pred HhhcCCeEEecCCCCCCChHHHHHHHHHhhcCCCCCeEEEe----CCCCccceeechhhhccc
Q 007811 501 QRLTSSILMTGGCCLFPGMSERLEAGIRMIRPCGAPIKVVR----ALDPVLDAWRGASVYATK 559 (589)
Q Consensus 501 ~~L~~NIvLtGG~S~~~Gf~eRL~~EL~~l~p~~~~v~V~~----~~d~~~~aW~Ggsilasl 559 (589)
..+-+.||||||++++||+.+=...=+...+--..+..+.- ..+|.|++-+|.-.++..
T Consensus 318 ~~~~~gvVlTGG~a~l~Gi~elA~~if~~~vRig~P~~~~Gl~d~~~~p~fs~avGl~~~~~~ 380 (418)
T COG0849 318 NHLPGGVVLTGGGAQLPGIVELAERIFGRPVRLGVPLNIVGLTDIARNPAFSTAVGLLLYGAL 380 (418)
T ss_pred ccCCCeEEEECchhcCccHHHHHHHhcCCceEeCCCccccCchhhccCchhhhhHHHHHHHhh
Confidence 56778999999999999997654443322111111112222 346899999999887764
No 79
>PTZ00121 MAEBL; Provisional
Probab=67.69 E-value=3e+02 Score=35.39 Aligned_cols=38 Identities=18% Similarity=0.271 Sum_probs=16.7
Q ss_pred HHHhhhhccChHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 007811 269 KRRQIFLKTTTEGRQRAKQKRVEEELEQEKKNQEEEER 306 (589)
Q Consensus 269 Kr~q~~lk~~~~ar~~~k~~~~~ek~~~~~~~~~~e~~ 306 (589)
.|+...++...++|.++-+.|..|..+..++.|+-|+-
T Consensus 1223 ErR~EE~RraEEaRK~aEEAkraEEeR~~EE~Rk~Eea 1260 (2084)
T PTZ00121 1223 AKKAEAVKKAEEAKKDAEEAKKAEEERNNEEIRKFEEA 1260 (2084)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444445555555544444444444433333333333
No 80
>PRK13317 pantothenate kinase; Provisional
Probab=65.90 E-value=5.9 Score=41.45 Aligned_cols=73 Identities=18% Similarity=0.161 Sum_probs=52.1
Q ss_pred CCcchhHHHHhhcCCCCChhhhHhhcCCeEEec-CCCCCCChHHHHHHHHHhhcCCCCCeEEEeCCCCccceeechhhhc
Q 007811 479 VGLDEMTGVSIRRLPTKDEDLEQRLTSSILMTG-GCCLFPGMSERLEAGIRMIRPCGAPIKVVRALDPVLDAWRGASVYA 557 (589)
Q Consensus 479 ~GL~e~I~~sI~~~~~c~~d~r~~L~~NIvLtG-G~S~~~Gf~eRL~~EL~~l~p~~~~v~V~~~~d~~~~aW~Ggsila 557 (589)
.||..+|.+.|..+ .|- -.|..-..+|+++| |.+..|++.+.|.+.+.- ..++++.|+++.|..=+||++++
T Consensus 200 asl~~~v~~~I~~l-A~~-~ar~~~~~~Ivf~G~gla~n~~l~~~l~~~l~~-----~~~~~~~p~~~~~~gAlGAaL~a 272 (277)
T PRK13317 200 AGVIGLVGEVITTL-SIQ-AAREKNIENIVYIGSTLTNNPLLQEIIESYTKL-----RNCTPIFLENGGYSGAIGALLLA 272 (277)
T ss_pred HHHHHHHHHHHHHH-HHH-HHHhcCCCeEEEECcccccCHHHHHHHHHHHhc-----CCceEEecCCCchhHHHHHHHHh
Confidence 57777777766321 000 11333348999999 799999999999877642 12577789999999999999886
Q ss_pred c
Q 007811 558 T 558 (589)
Q Consensus 558 s 558 (589)
.
T Consensus 273 ~ 273 (277)
T PRK13317 273 T 273 (277)
T ss_pred h
Confidence 4
No 81
>PTZ00121 MAEBL; Provisional
Probab=64.43 E-value=4e+02 Score=34.43 Aligned_cols=17 Identities=18% Similarity=0.188 Sum_probs=8.7
Q ss_pred HhHHHHHHHHHHHhhHH
Q 007811 159 QGQRLREMAEAKRSSRI 175 (589)
Q Consensus 159 ~~~RLqe~~~~~r~ekl 175 (589)
-..|+.|.+.+++..+.
T Consensus 1137 e~~Rr~EeaRKrEeaRr 1153 (2084)
T PTZ00121 1137 EDARKAEEARKAEDAKR 1153 (2084)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33455555555555443
No 82
>PF11104 PilM_2: Type IV pilus assembly protein PilM;; PDB: 2YCH_A.
Probab=64.04 E-value=4.5 Score=43.15 Aligned_cols=26 Identities=27% Similarity=0.542 Sum_probs=22.5
Q ss_pred hcCCeEEecCCCCCCChHHHHHHHHH
Q 007811 503 LTSSILMTGGCCLFPGMSERLEAGIR 528 (589)
Q Consensus 503 L~~NIvLtGG~S~~~Gf~eRL~~EL~ 528 (589)
=...|+||||++.++||.+-|..+|.
T Consensus 274 ~i~~I~L~Ggga~l~gL~~~l~~~l~ 299 (340)
T PF11104_consen 274 SIERIYLSGGGARLPGLAEYLSEELG 299 (340)
T ss_dssp --SEEEEESGGGGSTTHHHHHHHHHT
T ss_pred CCCEEEEECCccchhhHHHHHHHHHC
Confidence 35779999999999999999999984
No 83
>PF11239 DUF3040: Protein of unknown function (DUF3040); InterPro: IPR021401 Some members in this family of proteins with unknown function are annotated as membrane proteins however this cannot be confirmed.
Probab=60.93 E-value=5.2 Score=33.96 Aligned_cols=25 Identities=24% Similarity=0.513 Sum_probs=22.7
Q ss_pred hhHHHHHHHHHHHhhhhcCCCCCCC
Q 007811 406 MDENEAELARISARLQEVDPTFVPK 430 (589)
Q Consensus 406 ~e~~~~~l~~le~~L~~~Dp~F~~~ 430 (589)
+|.|+..|.+||..|..-||.|...
T Consensus 4 Se~E~r~L~eiEr~L~~~DP~fa~~ 28 (82)
T PF11239_consen 4 SEHEQRRLEEIERQLRADDPRFAAR 28 (82)
T ss_pred CHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 4678899999999999999999975
No 84
>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=58.64 E-value=2.6e+02 Score=31.43 Aligned_cols=64 Identities=20% Similarity=0.353 Sum_probs=32.8
Q ss_pred CHHHHHHHHHh-hhhccChH---HHHHHHHHHH----HHHHHHHHHhHHHHHHhhcChHHHHHHHHHHHHHH
Q 007811 262 SLEQLKEKRRQ-IFLKTTTE---GRQRAKQKRV----EEELEQEKKNQEEEERRLENPELYVEQMRAKYKEL 325 (589)
Q Consensus 262 ~~~~~keKr~q-~~lk~~~~---ar~~~k~~~~----~ek~~~~~~~~~~e~~~~~~~~~~~~~~r~~~~~i 325 (589)
|+|++...|+| .+.++--+ .|-+|+++++ +.|+-+..-++..-..-..+-+.||+.++--...|
T Consensus 196 TeE~iqaqrr~tE~erae~EretiRvkA~Aeaegraheakl~edvnrr~l~~~~n~eRekwl~aInTtf~hi 267 (630)
T KOG0742|consen 196 TEEQIQAQRRKTEMERAEAERETIRVKAKAEAEGRAHEAKLNEDVNRRQLRLKANEEREKWLEAINTTFTHI 267 (630)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhcchhhhhhhHHHHHHHHHHHhhhHHHHHHHHHhhhHHHh
Confidence 44455444433 34444444 5666666665 33443333333333333445567888887766654
No 85
>PF01968 Hydantoinase_A: Hydantoinase/oxoprolinase; InterPro: IPR002821 This family includes the enzymes hydantoinase and oxoprolinase (3.5.2.9 from EC). Both reactions involve the hydrolysis of 5-membered rings via hydrolysis of their internal imide bonds [].; GO: 0016787 hydrolase activity; PDB: 3C0B_C 3CET_B.
Probab=58.26 E-value=8.9 Score=40.22 Aligned_cols=40 Identities=20% Similarity=0.269 Sum_probs=25.6
Q ss_pred CCcceeeeCCCcceEEEeecCCccccc----------------cceecccccchhH
Q 007811 34 NKDGLAICPGFSTTHVIPFVEGEPVYR----------------GSCRTNIGGYHIT 73 (589)
Q Consensus 34 ~~tGLVVD~G~~~T~VvPV~eG~~l~~----------------a~~rl~~GG~~lt 73 (589)
..+++|||+|..+|.|.+|.+|.+... .+..+.+||-.++
T Consensus 76 ~~~~i~vDmGGTTtDi~~i~~G~p~~~~~~~~i~g~~t~~~~~~v~sig~GGgS~~ 131 (290)
T PF01968_consen 76 LENAIVVDMGGTTTDIALIKDGRPEISSEGAIIGGYPTDVPMLDVRSIGAGGGSIV 131 (290)
T ss_dssp -SSEEEEEE-SS-EEEEEEETTEE----------S-SSHHHHHTTTSEE---SSS-
T ss_pred CCCEEEEeCCCCEEEEEEEECCeeeccccccccCCceeeccchhheeeeeecceEE
Confidence 578999999999999999999988521 3456667787766
No 86
>KOG2072 consensus Translation initiation factor 3, subunit a (eIF-3a) [Translation, ribosomal structure and biogenesis]
Probab=57.86 E-value=4e+02 Score=32.27 Aligned_cols=13 Identities=23% Similarity=0.340 Sum_probs=6.0
Q ss_pred HHHHHHHHHHHHH
Q 007811 214 EIESTLVKLTQSL 226 (589)
Q Consensus 214 ~l~~~i~~l~~~~ 226 (589)
+|++.++.+.++|
T Consensus 681 Elq~rL~~q~Kki 693 (988)
T KOG2072|consen 681 ELQSRLQYQEKKI 693 (988)
T ss_pred HHHHHHHHHHhhh
Confidence 4444444444443
No 87
>PRK11678 putative chaperone; Provisional
Probab=57.07 E-value=4.4 Score=45.22 Aligned_cols=46 Identities=26% Similarity=0.341 Sum_probs=33.7
Q ss_pred CCeEEecCCCCCCChHHHHHHHHHhhcCCCCCeEEEeCCCCccceeechhhhcc
Q 007811 505 SSILMTGGCCLFPGMSERLEAGIRMIRPCGAPIKVVRALDPVLDAWRGASVYAT 558 (589)
Q Consensus 505 ~NIvLtGG~S~~~Gf~eRL~~EL~~l~p~~~~v~V~~~~d~~~~aW~Ggsilas 558 (589)
..||||||+|.+|++.+.|...+ |. ..|. ..++-.++=.|.+++|.
T Consensus 401 d~VvLvGGsSriP~V~~~l~~~f----g~---~~v~-~g~~~~sVa~Gla~~a~ 446 (450)
T PRK11678 401 DVIYLTGGSARSPLIRAALAQQL----PG---IPIV-GGDDFGSVTAGLARWAQ 446 (450)
T ss_pred CEEEEcCcccchHHHHHHHHHHC----CC---CcEE-eCCCcchHHHHHHHHHH
Confidence 57999999999999999886654 32 1222 24566788888888774
No 88
>PF01869 BcrAD_BadFG: BadF/BadG/BcrA/BcrD ATPase family; InterPro: IPR002731 This domain is found in the BadF (O07462 from SWISSPROT) and BadG (O07463 from SWISSPROT) proteins that are two subunits of Benzoyl-CoA reductase, that may be involved in ATP hydrolysis. The family also includes an activase subunit from the enzyme 2-hydroxyglutaryl-CoA dehydratase (P11568 from SWISSPROT). The hypothetical protein AQ_278 from Aquifex aeolicus O66634 from SWISSPROT contains two copies of this region suggesting that the family may structurally dimerise.; PDB: 2E2N_B 2E2Q_A 2E2P_B 2E2O_A 1ZBS_A 2CH6_A 2CH5_D 1ZC6_A 1HUX_A.
Probab=56.96 E-value=1.7 Score=44.65 Aligned_cols=48 Identities=19% Similarity=0.355 Sum_probs=36.0
Q ss_pred eEEecCCCCCCChHHHHHHHHHhhcCCCCCeEEEeCCCCccceeechhhhc
Q 007811 507 ILMTGGCCLFPGMSERLEAGIRMIRPCGAPIKVVRALDPVLDAWRGASVYA 557 (589)
Q Consensus 507 IvLtGG~S~~~Gf~eRL~~EL~~l~p~~~~v~V~~~~d~~~~aW~Ggsila 557 (589)
|+|+||...-..+...|...|....+.. .+..+..|.+.+..||.+||
T Consensus 224 v~l~GGv~~~~~~~~~l~~~l~~~~~~~---~~~~~~~~~~~~a~GAallA 271 (271)
T PF01869_consen 224 VVLSGGVFKNSPLVKALRDALKEKLPKV---PIIIPVEPQYDPAYGAALLA 271 (271)
T ss_dssp EEEESGGGGCHHHHHHHGGGS-HHHHCC---TCECECCGSSHHHHHHHHHH
T ss_pred EEEECCccCchHHHHHHHHHHHHhcCCC---ceEECCCCCccHHHHHHHhC
Confidence 9999999888778777777666655533 23345578999999999886
No 89
>COG1548 Predicted transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism]
Probab=56.62 E-value=7.7 Score=40.25 Aligned_cols=23 Identities=30% Similarity=0.530 Sum_probs=21.2
Q ss_pred CCcceeeeCCCcceEEEeecCCc
Q 007811 34 NKDGLAICPGFSTTHVIPFVEGE 56 (589)
Q Consensus 34 ~~tGLVVD~G~~~T~VvPV~eG~ 56 (589)
..+++.||+|..+|.||||.+|.
T Consensus 129 ~dsci~VD~GSTTtDIIPi~~ge 151 (330)
T COG1548 129 KDSCILVDMGSTTTDIIPIKDGE 151 (330)
T ss_pred CCceEEEecCCcccceEeecchh
Confidence 35799999999999999999997
No 90
>KOG4364 consensus Chromatin assembly factor-I [Chromatin structure and dynamics]
Probab=55.04 E-value=1.4e+02 Score=35.04 Aligned_cols=18 Identities=6% Similarity=-0.162 Sum_probs=8.2
Q ss_pred hhcCCeEEecCCCCCCCh
Q 007811 502 RLTSSILMTGGCCLFPGM 519 (589)
Q Consensus 502 ~L~~NIvLtGG~S~~~Gf 519 (589)
.|+.-+-|+-|+-.-..|
T Consensus 656 lm~ql~pl~hgn~ns~~~ 673 (811)
T KOG4364|consen 656 LMVQLFPLSHGNENSIND 673 (811)
T ss_pred HHHHHhhhhcccccchHH
Confidence 334444555555443333
No 91
>PF14450 FtsA: Cell division protein FtsA; PDB: 1E4F_T 4A2B_A 4A2A_A 1E4G_T.
Probab=54.60 E-value=21 Score=32.21 Aligned_cols=60 Identities=28% Similarity=0.307 Sum_probs=40.1
Q ss_pred eeeeCCCcceEEEeecCCccccccceecccc--------cchhH--HHHHHhhhccCCCCCCCCCHHHHHHH-Hhccccc
Q 007811 38 LAICPGFSTTHVIPFVEGEPVYRGSCRTNIG--------GYHIT--DYLKQLLSLKHPQHMTKLTWEKVEDL-KMEHCYI 106 (589)
Q Consensus 38 LVVD~G~~~T~VvPV~eG~~l~~a~~rl~~G--------G~~lt--~~L~~lL~~k~~~~~~~~~~~~v~~I-KE~~CyV 106 (589)
++||+|.+.|.++-...|.... +.-+++| |.+++ +-+.+-|.. ....++.+ |.+++.|
T Consensus 2 ~~iDiGs~~~~~~i~~~~~~~~--~~vl~~g~~~s~gi~~g~Itd~~~i~~~i~~---------a~~~AE~~~k~~i~~v 70 (120)
T PF14450_consen 2 VVIDIGSSKTKVAIAEDGSDGY--IRVLGVGEVPSKGIKGGHITDIEDISKAIKI---------AIEEAERLAKCEIGSV 70 (120)
T ss_dssp EEEEE-SSSEEEEEEETTEEEE--EEEES----------HHHHH--HHHHHHHT-----------HHHHHHH-HHHH--S
T ss_pred EEEEcCCCcEEEEEEEeCCCCc--EEEEEEecccccccCCCEEEEHHHHHHHHHH---------HHHHHHHHhCCeeeEE
Confidence 6899999999998777766555 7888999 99999 888777753 45667777 7766554
Q ss_pred cc
Q 007811 107 AP 108 (589)
Q Consensus 107 a~ 108 (589)
..
T Consensus 71 ~v 72 (120)
T PF14450_consen 71 YV 72 (120)
T ss_dssp --
T ss_pred Ee
Confidence 43
No 92
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=54.00 E-value=3.1e+02 Score=32.91 Aligned_cols=7 Identities=57% Similarity=0.994 Sum_probs=4.1
Q ss_pred ccCcCCC
Q 007811 466 EILFRPN 472 (589)
Q Consensus 466 E~LF~Ps 472 (589)
|+-|+|.
T Consensus 709 Eisf~pG 715 (1118)
T KOG1029|consen 709 EISFEPG 715 (1118)
T ss_pred cccccCC
Confidence 5566664
No 93
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=51.77 E-value=2e+02 Score=30.28 Aligned_cols=20 Identities=30% Similarity=0.609 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 007811 280 EGRQRAKQKRVEEELEQEKK 299 (589)
Q Consensus 280 ~ar~~~k~~~~~ek~~~~~~ 299 (589)
+||..-+..+++||+..++.
T Consensus 388 eareerrkqkeeeklk~e~q 407 (445)
T KOG2891|consen 388 EAREERRKQKEEEKLKAEEQ 407 (445)
T ss_pred HHHHHHHhhhHHHHHHHHHH
Confidence 45555555566666655544
No 94
>KOG4364 consensus Chromatin assembly factor-I [Chromatin structure and dynamics]
Probab=51.35 E-value=3.5e+02 Score=31.92 Aligned_cols=17 Identities=12% Similarity=0.186 Sum_probs=6.7
Q ss_pred eeeCCCcceEEEeecCC
Q 007811 39 AICPGFSTTHVIPFVEG 55 (589)
Q Consensus 39 VVD~G~~~T~VvPV~eG 55 (589)
|+..|-.+.+.+--.+|
T Consensus 122 ~~s~~~~~~s~~e~~d~ 138 (811)
T KOG4364|consen 122 VVSVGQRVSSGVENVDA 138 (811)
T ss_pred cccccccccccccccCC
Confidence 33444444443333333
No 95
>TIGR01175 pilM type IV pilus assembly protein PilM. This protein is required for the assembly of the type IV fimbria in Pseudomonas aeruginosa responsible for twitching motility, and for a similar pilus-like structure in Synechocystis. It is also found in species such as Deinococcus described as having natural transformation (for which a type IV pilus-like structure is proposed) but not fimbria.
Probab=50.72 E-value=11 Score=40.08 Aligned_cols=25 Identities=12% Similarity=0.407 Sum_probs=23.0
Q ss_pred cCCeEEecCCCCCCChHHHHHHHHH
Q 007811 504 TSSILMTGGCCLFPGMSERLEAGIR 528 (589)
Q Consensus 504 ~~NIvLtGG~S~~~Gf~eRL~~EL~ 528 (589)
.+.|+||||++.++||.+-|+.++.
T Consensus 283 i~~I~LtGgga~~~gl~~~l~~~l~ 307 (348)
T TIGR01175 283 LDGLVLAGGGATLSGLDAAIYQRLG 307 (348)
T ss_pred cceEEEECccccchhHHHHHHHHHC
Confidence 5779999999999999999999885
No 96
>PRK11031 guanosine pentaphosphate phosphohydrolase; Provisional
Probab=47.23 E-value=15 Score=41.56 Aligned_cols=41 Identities=10% Similarity=0.043 Sum_probs=33.8
Q ss_pred CcceeeeCCCcceEEEeecCCccccccceecccccchhHHHHH
Q 007811 35 KDGLAICPGFSTTHVIPFVEGEPVYRGSCRTNIGGYHITDYLK 77 (589)
Q Consensus 35 ~tGLVVD~G~~~T~VvPV~eG~~l~~a~~rl~~GG~~lt~~L~ 77 (589)
.+++|||+|.|+|.++-+-+|.+.. ...+++|.-.+++.+.
T Consensus 132 ~~~lviDIGGGStEl~~~~~~~~~~--~~Sl~lG~vrl~e~f~ 172 (496)
T PRK11031 132 DQRLVVDIGGASTELVTGTGAQATS--LFSLSMGCVTWLERYF 172 (496)
T ss_pred CCEEEEEecCCeeeEEEecCCceee--eeEEeccchHHHHHhc
Confidence 3589999999999999888887655 6789999988776543
No 97
>KOG2689 consensus Predicted ubiquitin regulatory protein [Posttranslational modification, protein turnover, chaperones]
Probab=44.54 E-value=1.7e+02 Score=30.68 Aligned_cols=56 Identities=20% Similarity=0.258 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHhhcChHHHHHHHHHHHHHHHHH-HHHHHHHhh
Q 007811 282 RQRAKQKRVEEELEQEKKNQEEEERRLENPELYVEQMRAKYKELSEK-IDQRKRLKT 337 (589)
Q Consensus 282 r~~~k~~~~~ek~~~~~~~~~~e~~~~~~~~~~~~~~r~~~~~i~~~-~~~r~~~~~ 337 (589)
+..+|+++.+......+|...-+..+...-..|...++..++.-..+ +++|++.+.
T Consensus 97 ~ekik~k~~k~~e~e~~E~~~~~k~~~ks~~~~~~a~~r~q~~e~~~~~qkRrreK~ 153 (290)
T KOG2689|consen 97 LEKIKQKQIKREELELREALEREKQRRKSGDEMSAAKRRLQDDEMRRAAQKRRREKA 153 (290)
T ss_pred HHHhcchhHHHHHHHHHHhhhhHHhhhhcccHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 44566666666666667777777777777788999998877766666 677777663
No 98
>TIGR03706 exo_poly_only exopolyphosphatase. It appears that a single enzyme may act as both exopolyphosphatase (Ppx) and guanosine pentaphosphate phosphohydrolase (GppA) in a number of species. Members of the seed alignment use to define this exception-level model are encoded adjacent to a polyphosphate kinase 1 gene, and the trusted cutoff is set high enough (425) that no genome has a second hit. Therefore all members may be presumed to at least share exopolyphospatase activity, and may lack GppA activity. GppA acts in the stringent response.
Probab=44.44 E-value=21 Score=37.51 Aligned_cols=41 Identities=24% Similarity=0.227 Sum_probs=34.4
Q ss_pred CcceeeeCCCcceEEEeecCCccccccceecccccchhHHHHH
Q 007811 35 KDGLAICPGFSTTHVIPFVEGEPVYRGSCRTNIGGYHITDYLK 77 (589)
Q Consensus 35 ~tGLVVD~G~~~T~VvPV~eG~~l~~a~~rl~~GG~~lt~~L~ 77 (589)
.+++|||+|.++|.++-+-+|.+.. ...+++|...+++.+.
T Consensus 125 ~~~~v~DiGGGSte~~~~~~~~~~~--~~Sl~lG~vrl~e~f~ 165 (300)
T TIGR03706 125 ADGLVVDIGGGSTELILGKDFEPGE--GVSLPLGCVRLTEQFF 165 (300)
T ss_pred CCcEEEEecCCeEEEEEecCCCEeE--EEEEccceEEhHHhhC
Confidence 4579999999999999888887654 7799999998887653
No 99
>COG4820 EutJ Ethanolamine utilization protein, possible chaperonin [Amino acid transport and metabolism]
Probab=44.30 E-value=19 Score=36.29 Aligned_cols=43 Identities=23% Similarity=0.503 Sum_probs=32.8
Q ss_pred cCCeEEecCCCCCCChHHHHHHHHHhhcCCCCCeEEEeCCCCccceeechh
Q 007811 504 TSSILMTGGCCLFPGMSERLEAGIRMIRPCGAPIKVVRALDPVLDAWRGAS 554 (589)
Q Consensus 504 ~~NIvLtGG~S~~~Gf~eRL~~EL~~l~p~~~~v~V~~~~d~~~~aW~Ggs 554 (589)
...++|+||++++||+.+-+.++|. ++|+.|..|.|..=.|-+
T Consensus 227 i~dl~lvGGac~~~g~e~~Fe~~l~--------l~v~~P~~p~y~TPLgIA 269 (277)
T COG4820 227 ITDLWLVGGACMQPGVEELFEKQLA--------LQVHLPQHPLYMTPLGIA 269 (277)
T ss_pred CcceEEecccccCccHHHHHHHHhc--------cccccCCCcceechhhhh
Confidence 4678999999999999999998872 456666666666555543
No 100
>PF14048 MBD_C: C-terminal domain of methyl-CpG binding protein 2 and 3; PDB: 2L2L_B.
Probab=43.57 E-value=32 Score=30.39 Aligned_cols=24 Identities=29% Similarity=0.389 Sum_probs=19.5
Q ss_pred CCCHHHHHHHHHHHHHHhHHHHHH
Q 007811 143 PPSEEEIARKAAIKERQGQRLREM 166 (589)
Q Consensus 143 ~~t~eel~~~~~rr~~~~~RLqe~ 166 (589)
.+|+||+.+|.+|=+...+||+|.
T Consensus 72 ~VT~eDIr~QE~rVk~aR~RLaeA 95 (96)
T PF14048_consen 72 VVTEEDIRRQERRVKKARKRLAEA 95 (96)
T ss_dssp ---HHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHHHHHHHH
Confidence 489999999999999999999885
No 101
>TIGR03123 one_C_unchar_1 probable H4MPT-linked C1 transfer pathway protein. This protein family was identified, by the method of partial phylogenetic profiling, as related to the use of tetrahydromethanopterin (H4MPT) as a C-1 carrier. Characteristic markers of the H4MPT-linked C1 transfer pathway include formylmethanofuran dehydrogenase subunits, methenyltetrahydromethanopterin cyclohydrolase, etc. Tetrahydromethanopterin, a tetrahydrofolate analog, occurs in methanogenic archaea, bacterial methanotrophs, planctomycetes, and a few other lineages.
Probab=42.78 E-value=20 Score=38.31 Aligned_cols=27 Identities=30% Similarity=0.466 Sum_probs=24.5
Q ss_pred CCcceeeeCCCcceEEEeecCCccccc
Q 007811 34 NKDGLAICPGFSTTHVIPFVEGEPVYR 60 (589)
Q Consensus 34 ~~tGLVVD~G~~~T~VvPV~eG~~l~~ 60 (589)
..++|+||+|..+|.|+||.+|.+...
T Consensus 127 ~~~~I~~DmGGTTtDi~~i~~G~p~~~ 153 (318)
T TIGR03123 127 IPECLFVDMGSTTTDIIPIIDGEVAAK 153 (318)
T ss_pred CCCEEEEEcCccceeeEEecCCEeeee
Confidence 578999999999999999999998763
No 102
>PF07946 DUF1682: Protein of unknown function (DUF1682); InterPro: IPR012879 The members of this family are all hypothetical eukaryotic proteins of unknown function. One member (Q920S6 from SWISSPROT) is described as being an adipocyte-specific protein, but no evidence of this was found.
Probab=41.80 E-value=86 Score=33.42 Aligned_cols=9 Identities=11% Similarity=0.316 Sum_probs=5.3
Q ss_pred HHHhhhhhc
Q 007811 20 AAFSYKYNQ 28 (589)
Q Consensus 20 svLSlya~g 28 (589)
..+++||+|
T Consensus 67 ~~f~~yaTG 75 (321)
T PF07946_consen 67 NEFTFYATG 75 (321)
T ss_pred ceEEEEEeC
Confidence 455666666
No 103
>PRK13917 plasmid segregation protein ParM; Provisional
Probab=41.15 E-value=11 Score=40.63 Aligned_cols=44 Identities=18% Similarity=0.211 Sum_probs=31.8
Q ss_pred cCCeEEecCCCCCCChHHHHHHHHHhhcCCCCCeEEEeCCCCccceeechhhhcc
Q 007811 504 TSSILMTGGCCLFPGMSERLEAGIRMIRPCGAPIKVVRALDPVLDAWRGASVYAT 558 (589)
Q Consensus 504 ~~NIvLtGG~S~~~Gf~eRL~~EL~~l~p~~~~v~V~~~~d~~~~aW~Ggsilas 558 (589)
+.+|+|+||++.+ ++.-|+..+|. +...++|+++.=.|...++.
T Consensus 292 ~d~IiL~GGGA~l------l~~~lk~~f~~-----~~~~~~p~~ANa~G~~~~g~ 335 (344)
T PRK13917 292 FDRVIVTGGGANI------FFDSLSHWYSD-----VEKADESQFANVRGYYKYGE 335 (344)
T ss_pred CCEEEEECCcHHH------HHHHHHHHcCC-----eEEcCChHHHHHHHHHHHHH
Confidence 5789999999976 34445555662 34568899988888777765
No 104
>COG0248 GppA Exopolyphosphatase [Nucleotide transport and metabolism / Inorganic ion transport and metabolism]
Probab=40.55 E-value=17 Score=41.26 Aligned_cols=41 Identities=22% Similarity=0.139 Sum_probs=33.2
Q ss_pred CCcceeeeCCCcceEEEeecCCccccccceecccccchhHHHH
Q 007811 34 NKDGLAICPGFSTTHVIPFVEGEPVYRGSCRTNIGGYHITDYL 76 (589)
Q Consensus 34 ~~tGLVVD~G~~~T~VvPV~eG~~l~~a~~rl~~GG~~lt~~L 76 (589)
...+||+|+|.|+|-++-+-+..+.. ...+++|.-.+|+.+
T Consensus 128 ~~~~lv~DIGGGStEl~~g~~~~~~~--~~Sl~~G~v~lt~~~ 168 (492)
T COG0248 128 KGDGLVIDIGGGSTELVLGDNFEIGL--LISLPLGCVRLTERF 168 (492)
T ss_pred CCCEEEEEecCCeEEEEEecCCccce--eEEeecceEEeehhh
Confidence 46899999999999999887665555 788899988777655
No 105
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=39.74 E-value=7.3e+02 Score=29.64 Aligned_cols=17 Identities=18% Similarity=0.258 Sum_probs=10.5
Q ss_pred cHHHHHHHHHhhhhhhc
Q 007811 358 NAAQRERMRLLTTAAFD 374 (589)
Q Consensus 358 s~a~~~rm~~i~~~~~~ 374 (589)
|++.+-.|-++.-|+..
T Consensus 611 saEtriKldLfsaLg~a 627 (697)
T PF09726_consen 611 SAETRIKLDLFSALGDA 627 (697)
T ss_pred hHHHHHHHHHHHHHHHH
Confidence 55566666667777643
No 106
>PF08841 DDR: Diol dehydratase reactivase ATPase-like domain; InterPro: IPR009191 Diol dehydratase (propanediol dehydratase) and glycerol dehydratase undergo concomitant, irreversible inactivation by glycerol during catalysis [, ]. This inactivation is mechanism-based and involves cleavage of the Co-C bond of the cobalamin cofactor, coenzyme B12 (AdoCbl), forming 5 -deoxyadenosine and a modified coenzyme []. Irreversible inactivation of the enzyme results from tight binding to the modified, inactive cobalamin [, ]. The glycerol-inactivated enzyme undergoes rapid reactivation in the presence of free AdoCbl, ATP, and Mg 2+ (or Mn 2+ ) []. Reactivation is mediated by a complex of two proteins: a large subunit (DdrA/PduG) and a small subunit (DdrB/PduH, IPR009192 from INTERPRO) [, ]. The two subunits of the reactivating factor for glycerol dehydratase have been shown to form a tight complex that serves to reactivate the glycerol-inactivated holoenzyme, as well as O2-inactivated holoenzyme in vitro []. It is believed that this reactivating factor replaces an enzyme-bound, adenine-lacking inactive cobalamin with a free, adenine-containing active cobalamin []. PduG and PduH, part of the propanediol utilization pdu operon, are believed to have a similar function in the reactivation of propanediol dehydratase. PduG was also proposed, on the basis of genetic tests, to be a cobalamin adenosyltransferase involved in the conversion of inactive cobalamin (B12) to AdoCbl []. However, this function has since been shown to belong to another protein, PduO (IPR009221 from INTERPRO, IPR012228 from INTERPRO) []. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO for more details on the propanediol utilization pathway and pdu operon, as well as on the glycerol breakdown pathway.; PDB: 1NBW_C 2D0P_C 2D0O_C.
Probab=39.21 E-value=88 Score=33.17 Aligned_cols=95 Identities=21% Similarity=0.086 Sum_probs=59.3
Q ss_pred hhhhhhhcCCCeEeeehhHHHhhhhhccCCCCCCcceeeeCCCcceEEEeecCCccccccceecccccchhHHHHHHhhh
Q 007811 2 AELLFETYGVPSVAFGVDAAFSYKYNQQYGICNKDGLAICPGFSTTHVIPFVEGEPVYRGSCRTNIGGYHITDYLKQLLS 81 (589)
Q Consensus 2 ~EiLFE~f~vPsv~~~~qsvLSlya~g~~~~~~~tGLVVD~G~~~T~VvPV~eG~~l~~a~~rl~~GG~~lt~~L~~lL~ 81 (589)
++.|=+.+++|.-.-+..+-++..+.-.+++....-.|+|+|.++|...-|-..-.+. ..++-=+|.-+|-.+..-|-
T Consensus 101 A~~l~~~lgv~V~igGvEAemAi~GALTTPGt~~PlaIlDmG~GSTDAsii~~~g~v~--~iHlAGAG~mVTmlI~sELG 178 (332)
T PF08841_consen 101 ADELEEELGVPVEIGGVEAEMAILGALTTPGTDKPLAILDMGGGSTDASIINRDGEVT--AIHLAGAGNMVTMLINSELG 178 (332)
T ss_dssp HHHHHHHHTSEEEEECEHHHHHHHHHTTSTT--SSEEEEEE-SSEEEEEEE-TTS-EE--EEEEE-SHHHHHHHHHHHCT
T ss_pred HHHHHHHHCCceEEccccHHHHHhcccCCCCCCCCeEEEecCCCcccHHHhCCCCcEE--EEEecCCchhhHHHHHHhhC
Confidence 4566778899999999999998887754444444567899999999976554433222 23334455666655555443
Q ss_pred ccCCCCCCCCCHHHHHHHHhc-cccc
Q 007811 82 LKHPQHMTKLTWEKVEDLKME-HCYI 106 (589)
Q Consensus 82 ~k~~~~~~~~~~~~v~~IKE~-~CyV 106 (589)
.-+++++++||.. +|-|
T Consensus 179 --------l~d~~lAE~IKkyPlaKV 196 (332)
T PF08841_consen 179 --------LEDRELAEDIKKYPLAKV 196 (332)
T ss_dssp ---------S-HHHHHHHHHS-EEEE
T ss_pred --------CCCHHHHHHhhhcchhhh
Confidence 2377899999975 4444
No 107
>PRK10854 exopolyphosphatase; Provisional
Probab=33.02 E-value=37 Score=38.56 Aligned_cols=40 Identities=18% Similarity=0.130 Sum_probs=33.2
Q ss_pred CcceeeeCCCcceEEEeecCCccccccceecccccchhHHHH
Q 007811 35 KDGLAICPGFSTTHVIPFVEGEPVYRGSCRTNIGGYHITDYL 76 (589)
Q Consensus 35 ~tGLVVD~G~~~T~VvPV~eG~~l~~a~~rl~~GG~~lt~~L 76 (589)
.+++|||+|.|+|.++-+-+|.+.. ...+++|.-.+++.+
T Consensus 137 ~~~lvvDIGGGStEl~~~~~~~~~~--~~S~~lG~vrl~e~f 176 (513)
T PRK10854 137 GRKLVIDIGGGSTELVIGENFEPIL--VESRRMGCVSFAQLY 176 (513)
T ss_pred CCeEEEEeCCCeEEEEEecCCCeeE--eEEEecceeeHHhhh
Confidence 4689999999999999998887665 556699999888743
No 108
>PF06277 EutA: Ethanolamine utilisation protein EutA; InterPro: IPR009377 Proteins in this entry are EutA ethanolamine utilization proteins, reactivating factors for ethanolamine ammonia lyase, encoded by the ethanolamine utilization eut operon. The holoenzyme of adenosylcobalamin-dependent ethanolamine ammonia-lyase (EutBC, IPR0092462 from INTERPRO, IPR010628 from INTERPRO), which is part of the ethanolamine utilization pathway [, , ], undergoes suicidal inactivation during catalysis as well as inactivation in the absence of substrate. The inactivation involves the irreversible cleavage of the Co-C bond of the coenzyme. The inactivated holoenzyme undergoes rapid and continuous reactivation in the presence of ATP, Mg2+, and free adenosylcobalamin in permeabilised cells (in situ), homogenate, and cell extracts of Escherichia coli. The EutA protein is essential for reactivation. It was demonstrated with purified recombinant EutA that both the suicidally inactivated and O2-inactivated holoethanolamine ammonia lyase underwent rapid reactivation in vitro by EutA in the presence of adenosylcobalamin, ATP, and Mg2+ []. The inactive enzyme-cyanocobalamin complex was also activated in situ and in vitro by EutA under the same conditions. Thus EutA is believed to be the only component of the reactivating factor for ethanolamine ammonia lyase. Reactivation and activation occur through the exchange of modified coenzyme for free intact adenosylcobalamin []. Bacteria that harbor the ethanolamine utilization pathway can use ethanolamine as a source of carbon and nitrogen. For more information on the ethanolamine utilization pathway, please see IPR009194 from INTERPRO, IPR012408 from INTERPRO.
Probab=30.80 E-value=34 Score=38.50 Aligned_cols=51 Identities=22% Similarity=0.128 Sum_probs=37.1
Q ss_pred hHHHhhhhhccC---CCCCCcceeeeCCCcceEEEeecCCccccccceecccccch
Q 007811 19 DAAFSYKYNQQY---GICNKDGLAICPGFSTTHVIPFVEGEPVYRGSCRTNIGGYH 71 (589)
Q Consensus 19 qsvLSlya~g~~---~~~~~tGLVVD~G~~~T~VvPV~eG~~l~~a~~rl~~GG~~ 71 (589)
.++++-+++|.. .....+-+=||+|.|+|.++-+-+|.++.. ..+++||+.
T Consensus 124 EsiiAgkGsGA~~~S~~~~~~V~NiDIGGGTtN~avf~~G~v~~T--~cl~IGGRL 177 (473)
T PF06277_consen 124 ESIIAGKGSGAAALSKEHHTVVANIDIGGGTTNIAVFDNGEVIDT--ACLDIGGRL 177 (473)
T ss_pred HHHHhccCccHHHHhhhhCCeEEEEEeCCCceeEEEEECCEEEEE--EEEeeccEE
Confidence 456666666621 112345566899999999999999999984 457999993
No 109
>KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis]
Probab=29.54 E-value=1.9e+02 Score=34.71 Aligned_cols=15 Identities=27% Similarity=0.355 Sum_probs=7.5
Q ss_pred EEecCCCCCCChHHH
Q 007811 508 LMTGGCCLFPGMSER 522 (589)
Q Consensus 508 vLtGG~S~~~Gf~eR 522 (589)
+-|-|.-.|.+|..|
T Consensus 545 IdtpghEsFtnlRsr 559 (1064)
T KOG1144|consen 545 IDTPGHESFTNLRSR 559 (1064)
T ss_pred ecCCCchhhhhhhhc
Confidence 334455555555544
No 110
>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1. All proteins in this family for which functions are known are cyclin dependent protein kinases that are components of TFIIH, a complex that is involved in nucleotide excision repair and transcription initiation. Also known as MAT1 (menage a trois 1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=28.67 E-value=1.7e+02 Score=31.29 Aligned_cols=17 Identities=18% Similarity=0.296 Sum_probs=12.2
Q ss_pred hcCCCCHHHHHHHHHHH
Q 007811 206 DTGYVSRQEIESTLVKL 222 (589)
Q Consensus 206 ~~g~~~~~~l~~~i~~l 222 (589)
+.-|.|..+.+.+++..
T Consensus 86 e~dF~~l~~yNdYLE~v 102 (309)
T TIGR00570 86 EEDFPSLREYNDYLEEV 102 (309)
T ss_pred hhccCCHHHHHHHHHHH
Confidence 34577888888877765
No 111
>KOG4403 consensus Cell surface glycoprotein STIM, contains SAM domain [General function prediction only]
Probab=28.06 E-value=5.4e+02 Score=28.89 Aligned_cols=116 Identities=24% Similarity=0.312 Sum_probs=0.0
Q ss_pred HHHHhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhh------cHHHHHHHhh--------hcCCCCHHHHHHHHHH
Q 007811 156 KERQGQRLREMAEAKRSSRINELENQIHGLEFLLQQLEQV------EENDIAAFLS--------DTGYVSRQEIESTLVK 221 (589)
Q Consensus 156 r~~~~~RLqe~~~~~r~ekl~~~e~~l~~~~~l~~~~~~~------~~~~~~~~L~--------~~g~~~~~~l~~~i~~ 221 (589)
.+.+.+.+.+|+.+ .|-|...|+.|+.++.-.+..... .+-+.+++|. ..|..++..- +.|+.
T Consensus 237 nk~akehv~km~kd--le~Lq~aEqsl~dlQk~Lekar~e~rnvavek~~lerkl~ea~rl~elreg~e~e~~r-kelE~ 313 (575)
T KOG4403|consen 237 NKKAKEHVNKMMKD--LEGLQRAEQSLEDLQKRLEKAREEQRNVAVEKLDLERKLDEAPRLSELREGVENETSR-KELEQ 313 (575)
T ss_pred hhHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHhhhchhhhhhhHHHHHhhhhhhhhhhcchhHHHHH-HHHHH
Q ss_pred HHHHHHHhhhcchhhhhhhhhhhcccCCCCCCccCCCc-----cCCHH---HHHHHHHh---hhhccChHHHHHHHHHH
Q 007811 222 LTQSLRKAKGERKVEQAELEKTDASMNEKYPLIHIPDN-----MLSLE---QLKEKRRQ---IFLKTTTEGRQRAKQKR 289 (589)
Q Consensus 222 l~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~Ll~~pd~-----~l~~~---~~keKr~q---~~lk~~~~ar~~~k~~~ 289 (589)
++..+++|..+- +....+. .|+. +||-| +--+|++| +-|+...++-.+.|++|
T Consensus 314 lR~~L~kAEkel------------e~nS~ws---aP~aLQ~wLq~T~E~E~q~~~kkrqnaekql~~Ake~~eklkKKr 377 (575)
T KOG4403|consen 314 LRVALEKAEKEL------------EANSSWS---APLALQKWLQLTHEVEVQYYNKKRQNAEKQLKEAKEMAEKLKKKR 377 (575)
T ss_pred HHHHHHHHHHHH------------HhccCCC---CcHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhh
No 112
>KOG2412 consensus Nuclear-export-signal (NES)-containing protein/polyadenylated-RNA export factor [RNA processing and modification]
Probab=27.50 E-value=8.9e+02 Score=28.01 Aligned_cols=32 Identities=19% Similarity=0.269 Sum_probs=23.3
Q ss_pred EEecCCCCCCChHHHHHHHHHhhcCCCCCeEE
Q 007811 508 LMTGGCCLFPGMSERLEAGIRMIRPCGAPIKV 539 (589)
Q Consensus 508 vLtGG~S~~~Gf~eRL~~EL~~l~p~~~~v~V 539 (589)
|+.|=.+++|-|.+-|...|...+|..+++.+
T Consensus 412 V~l~i~~q~Pdv~dlllA~l~KkCP~~VPf~~ 443 (591)
T KOG2412|consen 412 VILYIWSQFPDVGDLLLARLHKKCPYVVPFHI 443 (591)
T ss_pred HHHHHHHhCchHHHHHHHHHHhcCCccccccc
Confidence 44555778888888888888888886555443
No 113
>TIGR03739 PRTRC_D PRTRC system protein D. A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. It is often found on plasmids. This protein family is designated PRTRC system protein D. The gray zone, between trusted and noise, includes proteins found in the same genomes as other proteins of the PRTRC systems, but not in the same contiguous gene region.
Probab=27.32 E-value=36 Score=35.96 Aligned_cols=45 Identities=18% Similarity=0.437 Sum_probs=31.5
Q ss_pred cCCeEEecCCCCCCChHHHHHHHHHhhcCCCCCeEEEeCCCCccceeechhhhc
Q 007811 504 TSSILMTGGCCLFPGMSERLEAGIRMIRPCGAPIKVVRALDPVLDAWRGASVYA 557 (589)
Q Consensus 504 ~~NIvLtGG~S~~~Gf~eRL~~EL~~l~p~~~~v~V~~~~d~~~~aW~Ggsila 557 (589)
+.+|+|+||++.+ |..-|+..+|. ..|...++|+|+.=.|--.++
T Consensus 274 ~~~Iil~GGGa~l------l~~~l~~~f~~---~~i~~~~dp~~ANarG~~~~g 318 (320)
T TIGR03739 274 IQNIVLVGGGAFL------FKKAVKAAFPK---HRIVEVDEPMFANVRGFQIAG 318 (320)
T ss_pred ccEEEEeCCcHHH------HHHHHHHHCCC---CeeEecCCcHHHHHHHHHHhh
Confidence 6789999999963 34456666774 355566888888777765554
No 114
>KOG3654 consensus Uncharacterized CH domain protein [Cytoskeleton]
Probab=26.74 E-value=3e+02 Score=31.39 Aligned_cols=73 Identities=25% Similarity=0.394 Sum_probs=37.3
Q ss_pred CccCCHHHHHHHHHhhhhccCh---HHHHHHHHHHHHHHH-HHHHHhHHHHHHhhcChHHHHHHHHHHHHHHHHHHHHHH
Q 007811 258 DNMLSLEQLKEKRRQIFLKTTT---EGRQRAKQKRVEEEL-EQEKKNQEEEERRLENPELYVEQMRAKYKELSEKIDQRK 333 (589)
Q Consensus 258 d~~l~~~~~keKr~q~~lk~~~---~ar~~~k~~~~~ek~-~~~~~~~~~e~~~~~~~~~~~~~~r~~~~~i~~~~~~r~ 333 (589)
|++-.++++-+||..-|.|... +||.|.. .-+.|++ +++|-+|+.||+|..- ++-+..|+-|..+-..|+
T Consensus 381 deqkaedema~kraallekqqrraeear~rkq-qleae~e~kreearrkaeeer~~k-----eee~arrefirqey~rrk 454 (708)
T KOG3654|consen 381 DEQKAEDEMAQKRAALLEKQQRRAEEARRRKQ-QLEAEKEQKREEARRKAEEERAPK-----EEEVARREFIRQEYERRK 454 (708)
T ss_pred cccchhHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhhHhhhcch-----hhhhhHHHHHHHHHHHHH
Confidence 5566677888888876665543 3444432 2233333 3444455555554322 223445554544455555
Q ss_pred HHh
Q 007811 334 RLK 336 (589)
Q Consensus 334 ~~~ 336 (589)
+++
T Consensus 455 qlk 457 (708)
T KOG3654|consen 455 QLK 457 (708)
T ss_pred HHH
Confidence 554
No 115
>KOG4571 consensus Activating transcription factor 4 [Transcription]
Probab=26.07 E-value=2e+02 Score=30.37 Aligned_cols=26 Identities=27% Similarity=0.356 Sum_probs=16.1
Q ss_pred HHHHHHHhhhhccChHHHHHHHHHHHH
Q 007811 265 QLKEKRRQIFLKTTTEGRQRAKQKRVE 291 (589)
Q Consensus 265 ~~keKr~q~~lk~~~~ar~~~k~~~~~ 291 (589)
.++-||.|+.. |.+-+|+|.|+|++.
T Consensus 227 ~~~rkr~qnk~-AAtRYRqKkRae~E~ 252 (294)
T KOG4571|consen 227 KLRRKRQQNKA-AATRYRQKKRAEKEA 252 (294)
T ss_pred HHHHHHHHhHH-HHHHHHHHHHHHHHH
Confidence 44555555544 677777777777753
No 116
>PF10147 CR6_interact: Growth arrest and DNA-damage-inducible proteins-interacting protein 1; InterPro: IPR018472 Members of this family of proteins act as negative regulators of G1 to S cell cycle phase progression by inhibiting cyclin-dependent kinases. Inhibitory effects are additive with GADD45 proteins but occur also in the absence of GADD45 proteins. Furthermore, they act as a repressor of the orphan nuclear receptor NR4A1 by inhibiting AB domain-mediated transcriptional activity []. They may be involved in the hormone-mediated regulation of NR4A1 transcriptional activity.; GO: 0007049 cell cycle, 0005634 nucleus
Probab=25.70 E-value=6.3e+02 Score=25.72 Aligned_cols=66 Identities=14% Similarity=0.174 Sum_probs=37.4
Q ss_pred CHHHHHHHHHhhhhccChH-HHHHHHHHHHHHHHHHHHHhHHHHHHhhcChHHHHHHHHHHHHHHHH
Q 007811 262 SLEQLKEKRRQIFLKTTTE-GRQRAKQKRVEEELEQEKKNQEEEERRLENPELYVEQMRAKYKELSE 327 (589)
Q Consensus 262 ~~~~~keKr~q~~lk~~~~-ar~~~k~~~~~ek~~~~~~~~~~e~~~~~~~~~~~~~~r~~~~~i~~ 327 (589)
|++++.+--.+........ ..+..-.++.+++.....++.++-.........|+++.+.+..+--.
T Consensus 83 t~eelee~e~Ee~~~~~sl~em~k~~~~~~~~k~~k~~~Rek~Ia~nM~Kmpk~i~e~~~~~~kk~~ 149 (217)
T PF10147_consen 83 TPEELEEQEYEEVEWPPSLQEMLKELREKKEEKEEKRLAREKEIAKNMAKMPKWIAEWKAKIAKKEA 149 (217)
T ss_pred CHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 7777766544444333332 23333333334444444555566677788889999998777554433
No 117
>PF05644 Miff: Mitochondrial and peroxisomal fission factor Mff; InterPro: IPR008518 This family consists of several eukaryotic proteins of unknown function.
Probab=25.09 E-value=21 Score=36.80 Aligned_cols=12 Identities=25% Similarity=0.351 Sum_probs=11.0
Q ss_pred CCeEEecCCCCC
Q 007811 505 SSILMTGGCCLF 516 (589)
Q Consensus 505 ~NIvLtGG~S~~ 516 (589)
..|||+||+..+
T Consensus 55 ERIvV~G~~~~~ 66 (246)
T PF05644_consen 55 ERIVVAGGDQDI 66 (246)
T ss_pred CeEEEeCCCCcC
Confidence 789999999988
No 118
>KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis]
Probab=23.81 E-value=1.7e+02 Score=35.04 Aligned_cols=14 Identities=21% Similarity=0.698 Sum_probs=7.9
Q ss_pred CCCCCCCchhhHHH
Q 007811 379 EDTFGAKDEDWQLY 392 (589)
Q Consensus 379 ~d~fg~~d~dw~vy 392 (589)
+|.-|...+||.--
T Consensus 383 ~~e~g~~e~~~~~k 396 (1064)
T KOG1144|consen 383 DQEEGEEEDDWDAK 396 (1064)
T ss_pred hhhhcccchhhhcc
Confidence 44455555666655
No 119
>PRK05082 N-acetylmannosamine kinase; Provisional
Probab=21.89 E-value=89 Score=32.22 Aligned_cols=52 Identities=19% Similarity=0.204 Sum_probs=35.2
Q ss_pred CCeEEecCCCCCCChHHHHHHHHHhhcCCCCCeEEEeCCCCccceeechhhhc
Q 007811 505 SSILMTGGCCLFPGMSERLEAGIRMIRPCGAPIKVVRALDPVLDAWRGASVYA 557 (589)
Q Consensus 505 ~NIvLtGG~S~~~Gf~eRL~~EL~~l~p~~~~v~V~~~~d~~~~aW~Ggsila 557 (589)
.-|||.||.+..+.|-+++...+... +....+.|..+.....++-+||+.++
T Consensus 235 e~IvlgG~~~~~~~~~~~i~~~l~~~-~~~~~~~i~~s~~~~~~~~~GAa~~~ 286 (291)
T PRK05082 235 QCVVLGGSVGLAEGYLELVQAYLAQE-PAIYHVPLLAAHYRHDAGLLGAALWA 286 (291)
T ss_pred CEEEEcCccccHHHHHHHHHHHHHhc-ccccCCeEEECccCCchhhhhHHHHh
Confidence 35778777777777888888877764 22224566666656666777888775
No 120
>PF12268 DUF3612: Protein of unknown function (DUF3612); InterPro: IPR022055 This domain family is found in bacteria, and is approximately 180 amino acids in length. The family is found in association with PF01381 from PFAM.
Probab=21.55 E-value=1.4e+02 Score=28.64 Aligned_cols=76 Identities=16% Similarity=0.263 Sum_probs=37.2
Q ss_pred EEEe-CceeccccccCcCCCCCCCCC---CCcchhHHHHhhcCCCCCh-hhhHhhcCCeEEecCCCCCCChHHHHHHHHH
Q 007811 454 QIVL-GVERFRCPEILFRPNWVGIDQ---VGLDEMTGVSIRRLPTKDE-DLEQRLTSSILMTGGCCLFPGMSERLEAGIR 528 (589)
Q Consensus 454 ~I~l-g~ERf~~pE~LF~Psl~g~~~---~GL~e~I~~sI~~~~~c~~-d~r~~L~~NIvLtGG~S~~~Gf~eRL~~EL~ 528 (589)
.+++ +..|+.|+|..---.+.|... .||+---.-.- +.-|. .+-.+|-+--|-.||++.+|-.-.+-..-+.
T Consensus 65 IL~v~~~prIYcCESi~v~D~Agn~hVLCaGIDLNPAi~a---QG~da~~iA~~lK~~Cv~~gG~a~iP~~Ik~~l~sva 141 (178)
T PF12268_consen 65 ILNVGNEPRIYCCESIKVKDLAGNNHVLCAGIDLNPAIDA---QGGDALSIAEELKQACVSNGGSAPIPKHIKKDLTSVA 141 (178)
T ss_pred EeecCCCceEEEecccccccCCCCceeEEecccCCHhHhh---cCCCHHHHHHHHHHHHHhCCCCccCCHHHHHHHHHHH
Confidence 3444 466888888766555555432 23321111000 01111 1222222333456999999987666555555
Q ss_pred hhcC
Q 007811 529 MIRP 532 (589)
Q Consensus 529 ~l~p 532 (589)
.++.
T Consensus 142 ~ILN 145 (178)
T PF12268_consen 142 RILN 145 (178)
T ss_pred HHhh
Confidence 5543
No 121
>KOG0683 consensus Glutamine synthetase [Amino acid transport and metabolism]
Probab=20.51 E-value=4.3e+02 Score=28.94 Aligned_cols=76 Identities=14% Similarity=0.218 Sum_probs=49.7
Q ss_pred ChhhhHhhcCCeEEecCCC-CCCC-------------------hHHHHHHHHHhhcCCCCCeEEEeCCCCccceeechhh
Q 007811 496 DEDLEQRLTSSILMTGGCC-LFPG-------------------MSERLEAGIRMIRPCGAPIKVVRALDPVLDAWRGASV 555 (589)
Q Consensus 496 ~~d~r~~L~~NIvLtGG~S-~~~G-------------------f~eRL~~EL~~l~p~~~~v~V~~~~d~~~~aW~Ggsi 555 (589)
+..++..||.-|-++|-+. .+|| +..-+.+++...+ -|.+.-.|.|..+-|.|+.
T Consensus 184 eahy~acLyaGl~i~G~N~EvmPgQwEfqvGp~~GI~~gD~lw~aR~il~rVae~~----Gviasf~pKp~~g~WngaG- 258 (380)
T KOG0683|consen 184 EAHYRACLYAGLNISGINVEVMPGQWEFQVGPCEGISMGDQLWMARYILHRVAEKF----GVIASFDPKPILGDWNGAG- 258 (380)
T ss_pred hhhHHHHHhhheeeccccccccCceeEEeecchhcccchhhHHHHHHHHHHHHHHh----CeeEEecCCCCCCcccCcc-
Confidence 4566777888888888774 2333 1223334444333 2455556778899999943
Q ss_pred hcccCCCCccceeHHHHhhhchHHHHH
Q 007811 556 YATKLQFPQQTFSRMDYYEKGENWLRR 582 (589)
Q Consensus 556 lasl~~f~~~wITk~EY~E~G~~iv~~ 582 (589)
-+..+.|+++|.+.|..++..
T Consensus 259 ------~Htn~ST~~mr~~~g~~~i~~ 279 (380)
T KOG0683|consen 259 ------CHTNFSTKEMREAGGLKIIEE 279 (380)
T ss_pred ------cccccchhHHHhccCHHHHHH
Confidence 244567999999999988754
No 122
>KOG0100 consensus Molecular chaperones GRP78/BiP/KAR2, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=20.31 E-value=78 Score=35.10 Aligned_cols=30 Identities=27% Similarity=0.502 Sum_probs=24.7
Q ss_pred ChhhhHhhcCCeEEecCCCCCCChHHHHHH
Q 007811 496 DEDLEQRLTSSILMTGGCCLFPGMSERLEA 525 (589)
Q Consensus 496 ~~d~r~~L~~NIvLtGG~S~~~Gf~eRL~~ 525 (589)
|.++.+.=..-|||+||+|.+|-..+-|..
T Consensus 355 Ds~lkKsdideiVLVGGsTrIPKvQqllk~ 384 (663)
T KOG0100|consen 355 DSDLKKSDIDEIVLVGGSTRIPKVQQLLKD 384 (663)
T ss_pred hcCcccccCceEEEecCcccChhHHHHHHH
Confidence 667777778899999999999988776644
Done!