Query 007813
Match_columns 588
No_of_seqs 147 out of 174
Neff 4.0
Searched_HMMs 29240
Date Mon Mar 25 11:08:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007813.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/007813hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1wcn_A Transcription elongatio 91.7 0.034 1.2E-06 45.6 0.1 62 213-281 5-67 (70)
2 2kz3_A Putative uncharacterize 86.4 0.55 1.9E-05 39.8 3.7 40 230-274 17-56 (83)
3 2i1q_A DNA repair and recombin 74.0 0.87 3E-05 45.1 0.9 59 215-280 3-61 (322)
4 3lda_A DNA repair protein RAD5 70.9 2.1 7.1E-05 45.0 2.9 62 215-281 81-142 (400)
5 2z43_A DNA repair and recombin 68.7 1.1 3.7E-05 44.9 0.2 57 216-279 13-69 (324)
6 1b22_A DNA repair protein RAD5 68.3 0.86 3E-05 40.6 -0.6 62 216-282 24-85 (114)
7 3mab_A Uncharacterized protein 65.6 0.69 2.4E-05 40.0 -1.7 74 219-331 8-81 (93)
8 1v5w_A DMC1, meiotic recombina 63.4 1.6 5.5E-05 44.2 0.3 59 216-279 26-84 (343)
9 1pzn_A RAD51, DNA repair and r 61.9 3.1 0.00011 42.4 2.1 59 216-281 36-94 (349)
10 4dez_A POL IV 1, DNA polymeras 48.9 2.9 0.0001 42.6 -0.7 51 217-276 180-230 (356)
11 3pzp_A DNA polymerase kappa; D 45.7 8.5 0.00029 41.8 2.3 51 217-277 340-390 (517)
12 3osn_A DNA polymerase IOTA; ho 41.1 5.1 0.00017 42.3 -0.3 48 221-277 240-287 (420)
13 2aq4_A DNA repair protein REV1 39.1 8.2 0.00028 40.7 0.8 52 217-276 243-296 (434)
14 3im1_A Protein SNU246, PRE-mRN 38.8 13 0.00044 37.5 2.2 55 216-277 158-212 (328)
15 1t94_A Polymerase (DNA directe 37.9 13 0.00043 39.5 2.0 50 217-276 284-333 (459)
16 1jx4_A DNA polymerase IV (fami 34.7 8.6 0.00029 39.1 0.1 54 217-279 180-233 (352)
17 2q0z_X Protein Pro2281; SEC63, 32.7 27 0.00091 35.4 3.4 55 216-277 162-216 (339)
18 3bq0_A POL IV, DBH, DNA polyme 31.6 10 0.00036 38.5 0.2 54 217-279 181-234 (354)
19 4f4y_A POL IV, DNA polymerase 30.5 6.4 0.00022 40.5 -1.6 48 220-276 184-231 (362)
20 1inz_A EPS15-interacting porte 29.3 9.3 0.00032 35.3 -0.6 15 567-585 123-137 (148)
21 1z3e_B DNA-directed RNA polyme 26.0 38 0.0013 27.9 2.5 25 231-258 22-46 (73)
22 3gqc_A DNA repair protein REV1 24.8 13 0.00044 40.5 -0.6 51 217-276 317-367 (504)
23 3k4g_A DNA-directed RNA polyme 24.1 42 0.0014 28.6 2.5 38 231-273 25-62 (86)
24 1u9l_A Transcription elongatio 23.9 32 0.0011 28.0 1.7 51 226-281 15-65 (70)
25 1eyh_A Epsin; superhelix of he 22.1 9.3 0.00032 35.1 -2.0 15 567-585 105-119 (144)
26 3bqs_A Uncharacterized protein 21.9 22 0.00074 30.6 0.3 75 218-331 7-81 (93)
No 1
>1wcn_A Transcription elongation protein NUSA; RNA-binding protein, escherichia coli NUSA, transcription regulation, regulation of RNA binding; NMR {Escherichia coli} PDB: 2jzb_B
Probab=91.69 E-value=0.034 Score=45.56 Aligned_cols=62 Identities=24% Similarity=0.440 Sum_probs=51.2
Q ss_pred CCccceeeeeeccCchhhhhhhhcCCccHHHHHHHHhhChHHHHHHHccCCCchhHHHHHHhhcc-cccC
Q 007813 213 LNDEVWRLEKIGKDGSFHKRLNKAGIFTVEDFLRLVVRDSQRLRNILGSGMSNKMWDVLVDHAKT-CVLS 281 (588)
Q Consensus 213 L~DeVwRLekIgKdG~~hkrL~~~gI~tV~dFLrl~~~d~~kLR~iLg~gmS~k~We~~v~HAkt-Cvl~ 281 (588)
..|++-.|++|+..-+ ++|.++||+||+|+.. .+.+.|-.|. |+|...=+.++.-|+. |-+.
T Consensus 5 ~~~~l~~L~Gi~~~~~--~kL~e~Gi~TvedlA~---~~~~eL~~i~--gise~kA~~ii~aAr~~~w~~ 67 (70)
T 1wcn_A 5 PADDLLNLEGVDRDLA--FKLAARGVCTLEDLAE---QGIDDLADIE--GLTDEKAGALIMAARNICWFG 67 (70)
T ss_dssp CCHHHHSSTTCCHHHH--HHHHTTTCCSHHHHHT---SCHHHHHTSS--SCCHHHHHHHHHHHHHHHTTC
T ss_pred hhhHHHHcCCCCHHHH--HHHHHcCCCcHHHHHc---CCHHHHHHcc--CCCHHHHHHHHHHHHHccCcc
Confidence 4567778888877655 8999999999998765 4788898887 7999999999999998 7553
No 2
>2kz3_A Putative uncharacterized protein RAD51L3; RAD51D, homologous recombination, unknown function; NMR {Homo sapiens}
Probab=86.42 E-value=0.55 Score=39.82 Aligned_cols=40 Identities=25% Similarity=0.202 Sum_probs=30.7
Q ss_pred hhhhhhcCCccHHHHHHHHhhChHHHHHHHccCCCchhHHHHHHh
Q 007813 230 HKRLNKAGIFTVEDFLRLVVRDSQRLRNILGSGMSNKMWDVLVDH 274 (588)
Q Consensus 230 hkrL~~~gI~tV~dFLrl~~~d~~kLR~iLg~gmS~k~We~~v~H 274 (588)
-++|.+++|.||+||+. .|+.+|-+++ |+|-+.=-.+..|
T Consensus 17 ~~~L~~~~I~Tv~Dfl~---~d~~eL~~~~--~ls~~~v~~l~r~ 56 (83)
T 2kz3_A 17 IQLLRSHRIKTVVDLVS---ADLEEVAQKC--GLSYKALVALRRV 56 (83)
T ss_dssp HHHHHHTTCCCHHHHTT---SCHHHHHHHH--TCCHHHHHHHHHH
T ss_pred HHHHHHCCCCCHHHHHh---CCHHHHHHHh--CCCHHHHHHHHHH
Confidence 47899999999999975 7999999998 4565544444433
No 3
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=73.95 E-value=0.87 Score=45.11 Aligned_cols=59 Identities=22% Similarity=0.250 Sum_probs=44.4
Q ss_pred ccceeeeeeccCchhhhhhhhcCCccHHHHHHHHhhChHHHHHHHccCCCchhHHHHHHhhccccc
Q 007813 215 DEVWRLEKIGKDGSFHKRLNKAGIFTVEDFLRLVVRDSQRLRNILGSGMSNKMWDVLVDHAKTCVL 280 (588)
Q Consensus 215 DeVwRLekIgKdG~~hkrL~~~gI~tV~dFLrl~~~d~~kLR~iLg~gmS~k~We~~v~HAktCvl 280 (588)
+++..|++|+. ..-++|.++||+||+||+. .++..|-++. |+|.+.=+.+++.|+.+..
T Consensus 3 ~~~~~l~gi~~--~~~~kL~~~gi~t~~~~~~---~~~~~L~~~~--gis~~~a~~~i~~a~~~~~ 61 (322)
T 2i1q_A 3 DNLTDLPGVGP--STAEKLVEAGYIDFMKIAT---ATVGELTDIE--GISEKAAAKMIMGARDLCD 61 (322)
T ss_dssp --CTTSTTCCH--HHHHHHHHHTCCSHHHHHT---CCHHHHHTST--TCCHHHHHHHHHHHHHHTT
T ss_pred ccHhhcCCCCH--HHHHHHHHcCCCcHHHHHh---CCHHHHHHhh--CcCHHHHHHHHHHHHHhhh
Confidence 45666775554 4669999999999999985 4677787776 6888888888888887753
No 4
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=70.91 E-value=2.1 Score=45.01 Aligned_cols=62 Identities=24% Similarity=0.229 Sum_probs=50.6
Q ss_pred ccceeeeeeccCchhhhhhhhcCCccHHHHHHHHhhChHHHHHHHccCCCchhHHHHHHhhcccccC
Q 007813 215 DEVWRLEKIGKDGSFHKRLNKAGIFTVEDFLRLVVRDSQRLRNILGSGMSNKMWDVLVDHAKTCVLS 281 (588)
Q Consensus 215 DeVwRLekIgKdG~~hkrL~~~gI~tV~dFLrl~~~d~~kLR~iLg~gmS~k~We~~v~HAktCvl~ 281 (588)
.+|-+|+..|-.-.--++|.++||+||++|+. .++..|.++. |+|...=+.+++.|++++..
T Consensus 81 ~~~~~l~~~gi~~~~~~~L~~ag~~tv~~~~~---~~~~~L~~~~--gis~~~~~~i~~~a~~~~~~ 142 (400)
T 3lda_A 81 VPIEKLQVNGITMADVKKLRESGLHTAEAVAY---APRKDLLEIK--GISEAKADKLLNEAARLVPM 142 (400)
T ss_dssp CBGGGGCCTTCCHHHHHHHHHTTCCBHHHHHH---SCHHHHHTST--TCCHHHHHHHHHHHHHHSCC
T ss_pred cCHHHHHhCCCCHHHHHHHHHcCCCcHHHHHh---CCHHHHHHHh--CCCHHHHHHHHHHHHHhccc
Confidence 46778888555556679999999999999975 5888999987 68888888888999876654
No 5
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=68.65 E-value=1.1 Score=44.92 Aligned_cols=57 Identities=18% Similarity=0.235 Sum_probs=0.0
Q ss_pred cceeeeeeccCchhhhhhhhcCCccHHHHHHHHhhChHHHHHHHccCCCchhHHHHHHhhcccc
Q 007813 216 EVWRLEKIGKDGSFHKRLNKAGIFTVEDFLRLVVRDSQRLRNILGSGMSNKMWDVLVDHAKTCV 279 (588)
Q Consensus 216 eVwRLekIgKdG~~hkrL~~~gI~tV~dFLrl~~~d~~kLR~iLg~gmS~k~We~~v~HAktCv 279 (588)
++.+|.+|+.. .-++|.++||+||++|+.. ++..|-++. |+|...=+.+++.|+.+.
T Consensus 13 ~~~~l~g~~~~--~~~~l~~~g~~t~~~~~~~---~~~~l~~~~--g~s~~~~~~~~~~~~~~~ 69 (324)
T 2z43_A 13 TINDLPGISQT--VINKLIEAGYSSLETLAVA---SPQDLSVAA--GIPLSTAQKIIKEARDAL 69 (324)
T ss_dssp ----------------------------------------------------------------
T ss_pred cHHHcCCCCHH--HHHHHHHcCCCcHHHHHcC---CHHHHHHhh--CCCHHHHHHHHHHHHhhc
Confidence 67888877665 4599999999999999853 456677776 567777777777777654
No 6
>1b22_A DNA repair protein RAD51; DNA binding, riken structural genomics/proteomics initiative, RSGI, structural genomics, DNA binding protein; HET: DNA; NMR {Homo sapiens} SCOP: a.60.4.1
Probab=68.27 E-value=0.86 Score=40.61 Aligned_cols=62 Identities=32% Similarity=0.395 Sum_probs=50.5
Q ss_pred cceeeeeeccCchhhhhhhhcCCccHHHHHHHHhhChHHHHHHHccCCCchhHHHHHHhhcccccCC
Q 007813 216 EVWRLEKIGKDGSFHKRLNKAGIFTVEDFLRLVVRDSQRLRNILGSGMSNKMWDVLVDHAKTCVLSG 282 (588)
Q Consensus 216 eVwRLekIgKdG~~hkrL~~~gI~tV~dFLrl~~~d~~kLR~iLg~gmS~k~We~~v~HAktCvl~~ 282 (588)
+|.+|+..|-.-+.-++|.++|++||++. ...++..|.+|- |+|...=+.+++=|+.++..+
T Consensus 24 ~I~~L~~~GIg~~~i~kL~eAG~~Tve~v---a~a~~~eL~~i~--GIse~ka~kIi~aA~kl~~~g 85 (114)
T 1b22_A 24 PISRLEQCGINANDVKKLEEAGFHTVEAV---AYAPKKELINIK--GISEAKADKILAEAAKLVPMG 85 (114)
T ss_dssp CHHHHHHTTCSHHHHHHHHTTCCSSGGGB---TSSBHHHHHTTT--TCSTTHHHHHHHHHHHHSCCC
T ss_pred cHHHHHhcCCCHHHHHHHHHcCcCcHHHH---HhCCHHHHHHcc--CCCHHHHHHHHHHHHHHcccC
Confidence 68889855444467799999999999976 456788999986 789999999999999887554
No 7
>3mab_A Uncharacterized protein; NYSGXRC, PSI-2, structural genomics; 1.42A {Listeria monocytogenes} PDB: 3bqt_A
Probab=65.63 E-value=0.69 Score=39.98 Aligned_cols=74 Identities=23% Similarity=0.348 Sum_probs=48.9
Q ss_pred eeeeeccCchhhhhhhhcCCccHHHHHHHHhhChHHHHHHHccCCCchhHHHHHHhhcccccCCceEEEeeCCCCceEEE
Q 007813 219 RLEKIGKDGSFHKRLNKAGIFTVEDFLRLVVRDSQRLRNILGSGMSNKMWDVLVDHAKTCVLSGKLYVYYPDDPRNVGVV 298 (588)
Q Consensus 219 RLekIgKdG~~hkrL~~~gI~tV~dFLrl~~~d~~kLR~iLg~gmS~k~We~~v~HAktCvl~~k~y~y~~~~~~nvgl~ 298 (588)
.|-+||+.- -+.|.+.||+||+||..+ ++ .+.|..+.++- .+ +-
T Consensus 8 dLPNig~~~--e~~L~~~GI~t~~~Lr~~---Ga------------~~ay~rLk~~~-----------------~~--~~ 51 (93)
T 3mab_A 8 ELPNIGKVL--EQDLIKAGIKTPVELKDV---GS------------KEAFLRIWEND-----------------SS--VC 51 (93)
T ss_dssp GSTTCCHHH--HHHHHHTTCCSHHHHHHH---CH------------HHHHHHHHHHC-----------------TT--CC
T ss_pred hCCCCCHHH--HHHHHHcCCCCHHHHHhC---CH------------HHHHHHHHHhC-----------------CC--CC
Confidence 345566643 478999999999998763 22 23333333210 11 22
Q ss_pred EccccceeeeecCCeeecCCCCChHhHHHHHHH
Q 007813 299 FNNIYEFCGLIADGQYHSADSLSESQKVHVDTL 331 (588)
Q Consensus 299 FN~i~~lvG~~~~g~y~s~d~L~~~qk~~V~~L 331 (588)
+|..|.|+|++-| +....|++..|....++
T Consensus 52 ~~~L~aL~gAi~G---~~w~~l~~~~K~~L~~~ 81 (93)
T 3mab_A 52 MSELYALEGAVQG---IRWHGLDEAKKIELKKF 81 (93)
T ss_dssp HHHHHHHHHHHHT---SCGGGSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcC---CcHHHCCHHHHHHHHHH
Confidence 7888999999988 66788999988766554
No 8
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=63.41 E-value=1.6 Score=44.20 Aligned_cols=59 Identities=24% Similarity=0.308 Sum_probs=0.0
Q ss_pred cceeeeeeccCchhhhhhhhcCCccHHHHHHHHhhChHHHHHHHccCCCchhHHHHHHhhcccc
Q 007813 216 EVWRLEKIGKDGSFHKRLNKAGIFTVEDFLRLVVRDSQRLRNILGSGMSNKMWDVLVDHAKTCV 279 (588)
Q Consensus 216 eVwRLekIgKdG~~hkrL~~~gI~tV~dFLrl~~~d~~kLR~iLg~gmS~k~We~~v~HAktCv 279 (588)
++++|+.-|-.=..-++|.++||+||++|+. .++.+|.++. |+|...=+.+++.|..+.
T Consensus 26 ~~~~l~~~g~~~~~~~~l~~~g~~t~~~~~~---~~~~~l~~~~--~is~~~~~~~~~~a~~~~ 84 (343)
T 1v5w_A 26 DIDLLQKHGINVADIKKLKSVGICTIKGIQM---TTRRALCNVK--GLSEAKVDKIKEAANKLI 84 (343)
T ss_dssp ----------------------------------------------------------------
T ss_pred cHHHHhhCCCCHHHHHHHHHcCCCcHHHHHh---CCHHHHHHhh--CCCHHHHHHHHHHHHhhc
Confidence 6889994444445669999999999999985 4566777765 567666667777776653
No 9
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=61.86 E-value=3.1 Score=42.40 Aligned_cols=59 Identities=19% Similarity=0.245 Sum_probs=46.1
Q ss_pred cceeeeeeccCchhhhhhhhcCCccHHHHHHHHhhChHHHHHHHccCCCchhHHHHHHhhcccccC
Q 007813 216 EVWRLEKIGKDGSFHKRLNKAGIFTVEDFLRLVVRDSQRLRNILGSGMSNKMWDVLVDHAKTCVLS 281 (588)
Q Consensus 216 eVwRLekIgKdG~~hkrL~~~gI~tV~dFLrl~~~d~~kLR~iLg~gmS~k~We~~v~HAktCvl~ 281 (588)
++.+|.+|+. ...++|.++||+||++++. .++..|-++. |+|...=+.+++.|.++...
T Consensus 36 ~l~~l~Gi~~--~~~~kL~~ag~~t~~~~~~---~~~~~L~~~~--~~s~~~~~~~l~~~~~~~~~ 94 (349)
T 1pzn_A 36 SIEDLPGVGP--ATAEKLREAGYDTLEAIAV---ASPIELKEVA--GISEGTALKIIQAARKAANL 94 (349)
T ss_dssp CSSCCTTCCH--HHHHHHHTTTCCSHHHHHT---CCHHHHHHHH--CCCHHHHHHHHHHHHHHCST
T ss_pred cHHHcCCCCH--HHHHHHHHcCCCcHHHHHh---CCHHHHHhhc--CCCHHHHHHHHHHHhhhccc
Confidence 4666665544 6779999999999999875 5788898887 57877778888988877643
No 10
>4dez_A POL IV 1, DNA polymerase IV 1; Y-family, transferase; HET: DNA; 2.60A {Mycobacterium smegmatis}
Probab=48.94 E-value=2.9 Score=42.61 Aligned_cols=51 Identities=31% Similarity=0.271 Sum_probs=35.8
Q ss_pred ceeeeeeccCchhhhhhhhcCCccHHHHHHHHhhChHHHHHHHccCCCchhHHHHHHhhc
Q 007813 217 VWRLEKIGKDGSFHKRLNKAGIFTVEDFLRLVVRDSQRLRNILGSGMSNKMWDVLVDHAK 276 (588)
Q Consensus 217 VwRLekIgKdG~~hkrL~~~gI~tV~dFLrl~~~d~~kLR~iLg~gmS~k~We~~v~HAk 276 (588)
|-.|-+||+.- -++|...||+|++|+. ..++..|++.||..+ -..+.++|+
T Consensus 180 v~~l~GiG~~~--~~~L~~~GI~Ti~dL~---~~~~~~L~~~fG~~~----g~~l~~~a~ 230 (356)
T 4dez_A 180 PDALWGVGPKT--TKKLAAMGITTVADLA---VTDPSVLTTAFGPST----GLWLLLLAK 230 (356)
T ss_dssp GGGSTTCCHHH--HHHHHHTTCCSHHHHH---TSCHHHHHHHHCHHH----HHHHHHHHT
T ss_pred HHHHcCCchhH--HHHHHHcCCCeecccc---cCCHHHHHHHhCChH----HHHHHHHHc
Confidence 33444677644 4899999999999986 468999999997422 233445554
No 11
>3pzp_A DNA polymerase kappa; DNA nucleotidyltransferase, DNA binding nucleotide binding M binding, nucleus; HET: DNA TTD DTP; 3.34A {Homo sapiens}
Probab=45.72 E-value=8.5 Score=41.82 Aligned_cols=51 Identities=20% Similarity=0.360 Sum_probs=38.3
Q ss_pred ceeeeeeccCchhhhhhhhcCCccHHHHHHHHhhChHHHHHHHccCCCchhHHHHHHhhcc
Q 007813 217 VWRLEKIGKDGSFHKRLNKAGIFTVEDFLRLVVRDSQRLRNILGSGMSNKMWDVLVDHAKT 277 (588)
Q Consensus 217 VwRLekIgKdG~~hkrL~~~gI~tV~dFLrl~~~d~~kLR~iLg~gmS~k~We~~v~HAkt 277 (588)
|-+|-+||+.+. ++|...||+|++|+.++ +..|+..|| ...|..+.++|.-
T Consensus 340 V~kl~GIG~~t~--~~L~~lGI~TigDL~~~----~~~L~~~fG----~~~~~~l~~~a~G 390 (517)
T 3pzp_A 340 IRKVSGIGKVTE--KMLKALGIITCTELYQQ----RALLSLLFS----ETSWHYFLHISLG 390 (517)
T ss_dssp GGGSTTCCHHHH--HHHHHTTCCBHHHHHHH----HHHHHHHSC----HHHHHHHHHHHTT
T ss_pred hhhhccccHHHH--HHHHHhCCCcHHHHHhh----HHHHHHHhC----hHHHHHHHHHHcC
Confidence 445557787554 99999999999999885 357888775 3568877777653
No 12
>3osn_A DNA polymerase IOTA; hoogsteen base PAIR, protein-DNA complex, Y-family DNA polym translesion synthesis, nucleoside triphosphate; HET: DNA DOC 6OG TTP; 1.90A {Homo sapiens} PDB: 2dpj_A* 2fll_A* 2fln_A* 2flp_A* 3epg_A* 3epi_A* 2dpi_A* 3g6v_A* 3g6y_A* 3g6x_A* 3gv7_B* 3gv8_B* 3ngd_A* 3gv5_B* 3q8p_B* 3q8q_B* 3q8r_B* 3q8s_B* 4ebc_A* 4ebd_A* ...
Probab=41.08 E-value=5.1 Score=42.27 Aligned_cols=48 Identities=23% Similarity=0.194 Sum_probs=36.1
Q ss_pred eeeccCchhhhhhhhcCCccHHHHHHHHhhChHHHHHHHccCCCchhHHHHHHhhcc
Q 007813 221 EKIGKDGSFHKRLNKAGIFTVEDFLRLVVRDSQRLRNILGSGMSNKMWDVLVDHAKT 277 (588)
Q Consensus 221 ekIgKdG~~hkrL~~~gI~tV~dFLrl~~~d~~kLR~iLg~gmS~k~We~~v~HAkt 277 (588)
-+||+ ..-++|...||+|++|+.+ .++..|++.||. +....+.+||+-
T Consensus 240 ~GIG~--~t~~~L~~lGI~TigdLa~---~~~~~L~~~fG~----~~g~~L~~~a~G 287 (420)
T 3osn_A 240 PGIGY--KTAKCLEALGINSVRDLQT---FSPKILEKELGI----SVAQRIQKLSFG 287 (420)
T ss_dssp TTCCH--HHHHHHHHTTCCSHHHHHH---SCHHHHHHHHHH----HHHHHHHHHHTT
T ss_pred cCCCH--HHHHHHHHhCCCcHHHHhh---CCHHHHHHHhCc----hHHHHHHHHhcC
Confidence 34554 4569999999999999865 588999999974 345666677753
No 13
>2aq4_A DNA repair protein REV1; polymerase, PAD, N-digit, G-loop, transferase; HET: DNA DOC DCP; 2.32A {Saccharomyces cerevisiae} PDB: 3bjy_A* 3osp_A*
Probab=39.08 E-value=8.2 Score=40.68 Aligned_cols=52 Identities=19% Similarity=0.190 Sum_probs=38.4
Q ss_pred ceeeeeeccCchhhhhhhh--cCCccHHHHHHHHhhChHHHHHHHccCCCchhHHHHHHhhc
Q 007813 217 VWRLEKIGKDGSFHKRLNK--AGIFTVEDFLRLVVRDSQRLRNILGSGMSNKMWDVLVDHAK 276 (588)
Q Consensus 217 VwRLekIgKdG~~hkrL~~--~gI~tV~dFLrl~~~d~~kLR~iLg~gmS~k~We~~v~HAk 276 (588)
|-.|-+||+ ..-++|.. .||+|++|+.++. ++..|++.||. +....+..||+
T Consensus 243 v~~l~GiG~--~~~~~L~~~~~GI~ti~dL~~~~--~~~~L~~~fG~----~~g~~l~~~a~ 296 (434)
T 2aq4_A 243 LDDLPGVGH--STLSRLESTFDSPHSLNDLRKRY--TLDALKASVGS----KLGMKIHLALQ 296 (434)
T ss_dssp GGGSTTCCH--HHHHHHHHHTTCCCSHHHHHHHC--CHHHHHHHHCS----SHHHHHHHHTT
T ss_pred cccccCcCH--HHHHHHHHhcCCceEHHHHHhcC--CHHHHHHHhCH----HHHHHHHHHhc
Confidence 444445564 55689999 8999999999874 88999999974 34555566665
No 14
>3im1_A Protein SNU246, PRE-mRNA-splicing helicase BRR2; ATPase, RNA helicase, rnpase, RNA unwindase, molecular model mRNA splicing; 1.65A {Saccharomyces cerevisiae} PDB: 3im2_A* 3hib_A
Probab=38.78 E-value=13 Score=37.52 Aligned_cols=55 Identities=9% Similarity=0.177 Sum_probs=43.1
Q ss_pred cceeeeeeccCchhhhhhhhcCCccHHHHHHHHhhChHHHHHHHccCCCchhHHHHHHhhcc
Q 007813 216 EVWRLEKIGKDGSFHKRLNKAGIFTVEDFLRLVVRDSQRLRNILGSGMSNKMWDVLVDHAKT 277 (588)
Q Consensus 216 eVwRLekIgKdG~~hkrL~~~gI~tV~dFLrl~~~d~~kLR~iLg~gmS~k~We~~v~HAkt 277 (588)
+..-|.+|+.+-+ ++|.++||.|++|+.. .++++++++| +++++.-+.+.+-|..
T Consensus 158 pL~Qlp~i~~~~~--~~l~~~~i~s~~~l~~---~~~~e~~~ll--~~~~~~~~~v~~~~~~ 212 (328)
T 3im1_A 158 PLRQIPHFNNKIL--EKCKEINVETVYDIMA---LEDEERDEIL--TLTDSQLAQVAAFVNN 212 (328)
T ss_dssp GGGGSTTCCHHHH--HHHHHTTCCSHHHHHH---SCHHHHHHHC--CCCHHHHHHHHHHHHH
T ss_pred ceeCCCCCCHHHH--HHHHhCCCCCHHHHhc---CCHHHHHhHh--CCCHHHHHHHHHHHHh
Confidence 4566778877644 7799999999999865 5899999998 6888888887776653
No 15
>1t94_A Polymerase (DNA directed) kappa; replication, DNA repair, Y-family DNA polymerase, translesion DNA synthesis, lesion bypass; 2.40A {Homo sapiens} SCOP: d.240.1.1 e.8.1.7 PDB: 2oh2_A* 2w7o_A* 2w7p_A* 3hed_A* 3in5_A*
Probab=37.91 E-value=13 Score=39.50 Aligned_cols=50 Identities=20% Similarity=0.375 Sum_probs=37.5
Q ss_pred ceeeeeeccCchhhhhhhhcCCccHHHHHHHHhhChHHHHHHHccCCCchhHHHHHHhhc
Q 007813 217 VWRLEKIGKDGSFHKRLNKAGIFTVEDFLRLVVRDSQRLRNILGSGMSNKMWDVLVDHAK 276 (588)
Q Consensus 217 VwRLekIgKdG~~hkrL~~~gI~tV~dFLrl~~~d~~kLR~iLg~gmS~k~We~~v~HAk 276 (588)
|-+|-+||+.+ .++|...||+|++|+.++ +..|++.|| .+.|..+.++|+
T Consensus 284 v~~l~GiG~~~--~~~L~~lGI~T~gdL~~~----~~~L~~~fG----~~~~~~l~~~a~ 333 (459)
T 1t94_A 284 IRKVSGIGKVT--EKMLKALGIITCTELYQQ----RALLSLLFS----ETSWHYFLHISL 333 (459)
T ss_dssp GGGCTTSCHHH--HHHHHHTTCCBHHHHHHT----HHHHHHHSC----HHHHHHHHHHHT
T ss_pred HHhcCCcCHHH--HHHHHHcCCCcHHHHHhh----HHHHHHHhC----hHhHHHHHHHHc
Confidence 55666777654 489999999999998874 357999886 345666777776
No 16
>1jx4_A DNA polymerase IV (family Y); protein-DNA complex, Y-family, transferase-D complex; HET: DNA MSE ADI; 1.70A {Sulfolobus solfataricus} SCOP: d.240.1.1 e.8.1.7 PDB: 1jxl_A* 1n48_A* 1n56_A* 1ryr_A* 1rys_A* 1s0m_A* 1s0n_A* 1s0o_A* 1s10_A* 1s97_A* 1s9f_A* 2ia6_A* 2ibk_A* 2r8g_A* 2r8h_A* 2r8i_A* 2rdj_A* 3fds_A* 3m9m_B* 3m9n_B* ...
Probab=34.66 E-value=8.6 Score=39.06 Aligned_cols=54 Identities=22% Similarity=0.319 Sum_probs=39.9
Q ss_pred ceeeeeeccCchhhhhhhhcCCccHHHHHHHHhhChHHHHHHHccCCCchhHHHHHHhhcccc
Q 007813 217 VWRLEKIGKDGSFHKRLNKAGIFTVEDFLRLVVRDSQRLRNILGSGMSNKMWDVLVDHAKTCV 279 (588)
Q Consensus 217 VwRLekIgKdG~~hkrL~~~gI~tV~dFLrl~~~d~~kLR~iLg~gmS~k~We~~v~HAktCv 279 (588)
|..|-+||+ ...++|...||+|++|+.+ .++..|++.||. .....+.+||+--+
T Consensus 180 v~~l~GiG~--~~~~~L~~~Gi~t~~dL~~---~~~~~L~~~fG~----~~g~~l~~~a~G~d 233 (352)
T 1jx4_A 180 IADVPGIGN--ITAEKLKKLGINKLVDTLS---IEFDKLKGMIGE----AKAKYLISLARDEY 233 (352)
T ss_dssp GGGSTTCCH--HHHHHHHTTTCCBGGGGGS---SCHHHHHHHHCH----HHHHHHHHHHTTCC
T ss_pred CCcccccCH--HHHHHHHHcCCchHHHHHC---CCHHHHHHhcCh----hHHHHHHHHhCCCC
Confidence 555556665 4668999999999999874 688999999974 22566777776433
No 17
>2q0z_X Protein Pro2281; SEC63, SEC, NESG, HR1979, structural genomics, translocase, northeast structural genomics consortium, PSI-2; 2.00A {Homo sapiens} SCOP: a.289.1.1 b.1.18.22
Probab=32.70 E-value=27 Score=35.43 Aligned_cols=55 Identities=13% Similarity=0.212 Sum_probs=42.8
Q ss_pred cceeeeeeccCchhhhhhhhcCCccHHHHHHHHhhChHHHHHHHccCCCchhHHHHHHhhcc
Q 007813 216 EVWRLEKIGKDGSFHKRLNKAGIFTVEDFLRLVVRDSQRLRNILGSGMSNKMWDVLVDHAKT 277 (588)
Q Consensus 216 eVwRLekIgKdG~~hkrL~~~gI~tV~dFLrl~~~d~~kLR~iLg~gmS~k~We~~v~HAkt 277 (588)
+..-|.+|+.+ .-++|.++||.|++||.. .++.++.++|| +++..-+.+.+-+..
T Consensus 162 pL~Qlp~i~~~--~~~~l~~~~i~s~~~l~~---~~~~e~~~ll~--l~~~~~~~i~~~~~~ 216 (339)
T 2q0z_X 162 YLKQLPHFTSE--HIKRCTDKGVESVFDIME---MEDEERNALLQ--LTDSQIADVARFCNR 216 (339)
T ss_dssp GGGGSTTCCHH--HHHHHHHTTCCSHHHHHH---SCHHHHHHHHC--CCHHHHHHHHHHHTT
T ss_pred ceecCCCCCHH--HHHHHHhcCCCCHHHHHh---CCHHHHHHHHC--CCHHHHHHHHHHHHh
Confidence 46678888775 447899999999999875 78999999994 887776777665543
No 18
>3bq0_A POL IV, DBH, DNA polymerase IV; Y-family, lesion bypass; HET: DNA; 2.60A {Sulfolobus acidocaldarius} SCOP: d.240.1.1 e.8.1.7 PDB: 3bq1_A* 3bq2_A* 1k1q_A 1k1s_A
Probab=31.61 E-value=10 Score=38.48 Aligned_cols=54 Identities=26% Similarity=0.362 Sum_probs=39.6
Q ss_pred ceeeeeeccCchhhhhhhhcCCccHHHHHHHHhhChHHHHHHHccCCCchhHHHHHHhhcccc
Q 007813 217 VWRLEKIGKDGSFHKRLNKAGIFTVEDFLRLVVRDSQRLRNILGSGMSNKMWDVLVDHAKTCV 279 (588)
Q Consensus 217 VwRLekIgKdG~~hkrL~~~gI~tV~dFLrl~~~d~~kLR~iLg~gmS~k~We~~v~HAktCv 279 (588)
|..|-+||+ ...++|...||+|++|+.+ .++..|++.||. .....+.+||+--+
T Consensus 181 v~~l~GiG~--~~~~~L~~~Gi~t~~dL~~---~~~~~L~~~fG~----~~g~~l~~~a~G~d 234 (354)
T 3bq0_A 181 IDEIPGIGS--VLARRLNELGIQKLRDILS---KNYNELEKITGK----AKALYLLKLAQNKY 234 (354)
T ss_dssp STTSTTCCH--HHHHHHTTTTCCBGGGGGG---SCHHHHHHHHCH----HHHHHHHHHHTTCC
T ss_pred cccccCcCH--HHHHHHHHcCCccHHHHhc---CCHHHHHHHHCH----HHHHHHHHHhCCCC
Confidence 334445564 5668999999999999875 688999999974 22666777777433
No 19
>4f4y_A POL IV, DNA polymerase IV; Y-family polymerase, transferase-DNA complex; HET: DNA DCP; 2.34A {Sulfolobus acidocaldarius} PDB: 3bq0_A* 3bq1_A* 3bq2_A* 4hyk_A* 1k1q_A 1k1s_A
Probab=30.53 E-value=6.4 Score=40.54 Aligned_cols=48 Identities=29% Similarity=0.430 Sum_probs=35.5
Q ss_pred eeeeccCchhhhhhhhcCCccHHHHHHHHhhChHHHHHHHccCCCchhHHHHHHhhc
Q 007813 220 LEKIGKDGSFHKRLNKAGIFTVEDFLRLVVRDSQRLRNILGSGMSNKMWDVLVDHAK 276 (588)
Q Consensus 220 LekIgKdG~~hkrL~~~gI~tV~dFLrl~~~d~~kLR~iLg~gmS~k~We~~v~HAk 276 (588)
|-+||+. .-++|...||+|++|+.+ .++..|++.||. +....+..+|+
T Consensus 184 l~GiG~~--~~~~L~~~GI~Ti~dL~~---~~~~~L~~~fG~----~~g~~l~~~a~ 231 (362)
T 4f4y_A 184 IPGIGSV--LARRLNELGIQKLRDILS---KNYNELEKITGK----AKALYLLKLAQ 231 (362)
T ss_dssp STTCCST--THHHHHHTTCCBGGGGTT---SCHHHHHHHHCH----HHHHHHHHHHT
T ss_pred ccCCCHH--HHHHHHHcCCChHHHHhc---CCHHHHHHHhCh----HHHHHHHHHhc
Confidence 3356665 458999999999999764 688999999973 34555566665
No 20
>1inz_A EPS15-interacting portein(epsin); alpha-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.118.9.1
Probab=29.29 E-value=9.3 Score=35.34 Aligned_cols=15 Identities=53% Similarity=0.716 Sum_probs=13.9
Q ss_pred hhheeehhhHHhhhccccc
Q 007813 567 WGIFIRKKAAERRAQLVEL 585 (588)
Q Consensus 567 WGiFiRKKAAERRAQlVEL 585 (588)
||+.||+||. +|++|
T Consensus 123 ~G~nVR~kAk----~l~~L 137 (148)
T 1inz_A 123 QGVNVREKAK----QLVAL 137 (148)
T ss_dssp CCHHHHHHHH----HHHHH
T ss_pred chHHHHHHHH----HHHHH
Confidence 8999999999 88888
No 21
>1z3e_B DNA-directed RNA polymerase alpha chain; bacterial transcription regulation, disulfide stress; 1.50A {Bacillus subtilis} SCOP: a.60.3.1 PDB: 3ihq_B
Probab=26.00 E-value=38 Score=27.89 Aligned_cols=25 Identities=24% Similarity=0.490 Sum_probs=19.3
Q ss_pred hhhhhcCCccHHHHHHHHhhChHHHHHH
Q 007813 231 KRLNKAGIFTVEDFLRLVVRDSQRLRNI 258 (588)
Q Consensus 231 krL~~~gI~tV~dFLrl~~~d~~kLR~i 258 (588)
.-|+.+||+||+|+++ +.++.|.+|
T Consensus 22 NcLkragI~Tv~dL~~---~s~~dLlki 46 (73)
T 1z3e_B 22 NCLKRAGINTVQELAN---KTEEDMMKV 46 (73)
T ss_dssp HHHHHTTCCBHHHHHT---SCHHHHHTS
T ss_pred HHHHHcCCCcHHHHHc---CCHHHHHHc
Confidence 4678899999999877 456666666
No 22
>3gqc_A DNA repair protein REV1; protein-DNA complex, DNA damage, DNA repair, DNA synthesis, binding, magnesium, metal-binding; HET: DNA DOC DCP; 2.50A {Homo sapiens}
Probab=24.79 E-value=13 Score=40.47 Aligned_cols=51 Identities=24% Similarity=0.328 Sum_probs=35.9
Q ss_pred ceeeeeeccCchhhhhhhhcCCccHHHHHHHHhhChHHHHHHHccCCCchhHHHHHHhhc
Q 007813 217 VWRLEKIGKDGSFHKRLNKAGIFTVEDFLRLVVRDSQRLRNILGSGMSNKMWDVLVDHAK 276 (588)
Q Consensus 217 VwRLekIgKdG~~hkrL~~~gI~tV~dFLrl~~~d~~kLR~iLg~gmS~k~We~~v~HAk 276 (588)
|-.|-+||+ ..-++|...||+|++|+. ..++..|++.||.. ....+..+|+
T Consensus 317 V~~l~GIG~--~t~~kL~~lGI~TigDLa---~~~~~~L~~~fG~~----~g~~L~~~a~ 367 (504)
T 3gqc_A 317 VTNLPGVGH--SMESKLASLGIKTCGDLQ---YMTMAKLQKEFGPK----TGQMLYRFCR 367 (504)
T ss_dssp GGGSTTCCH--HHHHHHHHTTCCBHHHHT---TSCHHHHHHHHCHH----HHHHHHHHTT
T ss_pred hhHhhCcCH--HHHHHHHHcCCCcHHHHH---hccHHHHHHhhChh----HHHHHHHHhc
Confidence 444445665 455899999999999986 46889999999752 2333445554
No 23
>3k4g_A DNA-directed RNA polymerase subunit alpha; bacterial transcription regulation, DNA-directed RNA polymer nucleotidyltransferase; HET: MLY; 2.05A {Escherichia coli k-12} SCOP: a.60.3.1 PDB: 3n4m_B* 1lb2_B* 3n97_B* 1xs9_D
Probab=24.09 E-value=42 Score=28.64 Aligned_cols=38 Identities=13% Similarity=0.165 Sum_probs=24.3
Q ss_pred hhhhhcCCccHHHHHHHHhhChHHHHHHHccCCCchhHHHHHH
Q 007813 231 KRLNKAGIFTVEDFLRLVVRDSQRLRNILGSGMSNKMWDVLVD 273 (588)
Q Consensus 231 krL~~~gI~tV~dFLrl~~~d~~kLR~iLg~gmS~k~We~~v~ 273 (588)
.-|+.+||+||+|+++. +++.|.+|= |+-.|.-+.+.+
T Consensus 25 NcLkragI~Tv~dL~~~---se~dLlki~--n~G~KSl~EI~~ 62 (86)
T 3k4g_A 25 NCLXAEAIHYIGDLVQR---TEVELLXTP--NLGXXSLTEIXD 62 (86)
T ss_dssp HHHHHTTCCBHHHHHHS---CHHHHHTST--TCCHHHHHHHHH
T ss_pred HHHHHcCCCcHHHHHhC---CHHHHhhcc--ccCcccHHHHHH
Confidence 46889999999998764 555555552 344444444443
No 24
>1u9l_A Transcription elongation protein NUSA; escherichia coli NUSA, phage lambda protein N, regulation of RNA binding, transcription antitermination, X-RAY crystallography; 1.90A {Escherichia coli} SCOP: a.60.4.2 PDB: 1wcl_A
Probab=23.90 E-value=32 Score=27.99 Aligned_cols=51 Identities=24% Similarity=0.352 Sum_probs=40.7
Q ss_pred CchhhhhhhhcCCccHHHHHHHHhhChHHHHHHHccCCCchhHHHHHHhhcccccC
Q 007813 226 DGSFHKRLNKAGIFTVEDFLRLVVRDSQRLRNILGSGMSNKMWDVLVDHAKTCVLS 281 (588)
Q Consensus 226 dG~~hkrL~~~gI~tV~dFLrl~~~d~~kLR~iLg~gmS~k~We~~v~HAktCvl~ 281 (588)
+-..-++|..+|++||++. .+.+++.|-.|- |++...=+.+.+-|+.++..
T Consensus 15 ~e~~a~~L~~~Gf~tve~v---A~~~~~eL~~I~--G~dE~~a~~l~~~A~~~l~~ 65 (70)
T 1u9l_A 15 DEDFATVLVEEGFSTLEEL---AYVPMKELLEIE--GLDEPTVEALRERAKNALAT 65 (70)
T ss_dssp CHHHHHHHHHTTCCCHHHH---HHSCHHHHTTST--TCCHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHcCcCcHHHH---HcCCHHHHhhcc--CCCHHHHHHHHHHHHHHHHH
Confidence 3456689999999999964 556777887775 78999999999999877543
No 25
>1eyh_A Epsin; superhelix of helices, cell cycle; 1.56A {Rattus norvegicus} SCOP: a.118.9.1 PDB: 1h0a_A* 1edu_A
Probab=22.06 E-value=9.3 Score=35.15 Aligned_cols=15 Identities=53% Similarity=0.716 Sum_probs=13.5
Q ss_pred hhheeehhhHHhhhccccc
Q 007813 567 WGIFIRKKAAERRAQLVEL 585 (588)
Q Consensus 567 WGiFiRKKAAERRAQlVEL 585 (588)
||+.||+||. +|++|
T Consensus 105 ~G~~VR~kak----~l~~L 119 (144)
T 1eyh_A 105 QGVNVREKAK----QLVAL 119 (144)
T ss_dssp CHHHHHHHHH----HHHHH
T ss_pred hHHHHHHHHH----HHHHH
Confidence 8999999998 77777
No 26
>3bqs_A Uncharacterized protein; 10114F, NYSGXRC, PSI-2, structural genomics, protein structure initiative; 1.42A {Listeria monocytogenes str} PDB: 3bqt_A 3mab_A
Probab=21.89 E-value=22 Score=30.55 Aligned_cols=75 Identities=23% Similarity=0.358 Sum_probs=48.3
Q ss_pred eeeeeeccCchhhhhhhhcCCccHHHHHHHHhhChHHHHHHHccCCCchhHHHHHHhhcccccCCceEEEeeCCCCceEE
Q 007813 218 WRLEKIGKDGSFHKRLNKAGIFTVEDFLRLVVRDSQRLRNILGSGMSNKMWDVLVDHAKTCVLSGKLYVYYPDDPRNVGV 297 (588)
Q Consensus 218 wRLekIgKdG~~hkrL~~~gI~tV~dFLrl~~~d~~kLR~iLg~gmS~k~We~~v~HAktCvl~~k~y~y~~~~~~nvgl 297 (588)
-.|-.||+. .-+.|.+.||+||+||..+ ++. ++|..+.+. ... +
T Consensus 7 ~~LPNiG~~--~e~~L~~vGI~s~e~L~~~---Ga~------------~ay~rL~~~-----------------~~~--~ 50 (93)
T 3bqs_A 7 SELPNIGKV--LEQDLIKAGIKTPVELKDV---GSK------------EAFLRIWEN-----------------DSS--V 50 (93)
T ss_dssp GGSTTCCHH--HHHHHHHTTCCSHHHHHHH---HHH------------HHHHHHHTT-----------------CTT--C
T ss_pred hcCCCCCHH--HHHHHHHcCCCCHHHHHhC---CHH------------HHHHHHHHH-----------------CCC--C
Confidence 344556664 4488999999999998764 222 233333221 011 2
Q ss_pred EEccccceeeeecCCeeecCCCCChHhHHHHHHH
Q 007813 298 VFNNIYEFCGLIADGQYHSADSLSESQKVHVDTL 331 (588)
Q Consensus 298 ~FN~i~~lvG~~~~g~y~s~d~L~~~qk~~V~~L 331 (588)
.++.+|.|+||+-| +....|++..|....+.
T Consensus 51 c~~~L~aL~gAi~G---~~w~~l~~~~K~~L~~~ 81 (93)
T 3bqs_A 51 CMSELYALEGAVQG---IRWHGLDEAKKIELKKF 81 (93)
T ss_dssp CHHHHHHHHHHHHT---SCGGGSCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHcC---CCHHHCCHHHHHHHHHH
Confidence 23778889999987 67788998888776543
Done!