Query 007814
Match_columns 588
No_of_seqs 511 out of 3412
Neff 8.9
Searched_HMMs 29240
Date Mon Mar 25 11:09:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007814.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/007814hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2db3_A ATP-dependent RNA helic 100.0 1.6E-69 5.4E-74 578.9 47.9 391 129-528 42-434 (434)
2 2i4i_A ATP-dependent RNA helic 100.0 3.6E-62 1.2E-66 519.6 44.0 394 131-531 3-412 (417)
3 2j0s_A ATP-dependent RNA helic 100.0 2.1E-59 7.2E-64 497.4 34.3 370 138-522 32-403 (410)
4 3eiq_A Eukaryotic initiation f 100.0 1.1E-57 3.9E-62 484.3 32.5 376 137-527 34-412 (414)
5 1s2m_A Putative ATP-dependent 100.0 1.4E-56 4.7E-61 474.0 37.2 368 140-523 18-386 (400)
6 1xti_A Probable ATP-dependent 100.0 3.8E-56 1.3E-60 468.9 35.5 369 143-524 8-380 (391)
7 1hv8_A Putative ATP-dependent 100.0 5.7E-55 1.9E-59 455.4 39.3 352 141-513 4-356 (367)
8 3pey_A ATP-dependent RNA helic 100.0 6.7E-55 2.3E-59 459.5 37.6 357 140-514 2-369 (395)
9 3fht_A ATP-dependent RNA helic 100.0 3.8E-55 1.3E-59 464.4 35.9 362 139-516 21-394 (412)
10 3sqw_A ATP-dependent RNA helic 100.0 9.7E-55 3.3E-59 481.5 38.5 356 150-512 28-408 (579)
11 1fuu_A Yeast initiation factor 100.0 1.6E-56 5.4E-61 472.2 22.5 372 138-525 16-389 (394)
12 3i5x_A ATP-dependent RNA helic 100.0 1.6E-54 5.5E-59 478.8 36.9 357 150-513 79-460 (563)
13 3fmp_B ATP-dependent RNA helic 100.0 1.4E-56 4.7E-61 485.6 19.7 372 131-518 77-463 (479)
14 2z0m_A 337AA long hypothetical 100.0 5E-52 1.7E-56 428.2 36.2 333 150-514 1-334 (337)
15 2v1x_A ATP-dependent DNA helic 100.0 2.2E-52 7.5E-57 459.8 33.4 331 145-501 23-374 (591)
16 1oyw_A RECQ helicase, ATP-depe 100.0 1.5E-50 5E-55 440.7 36.7 330 142-501 1-343 (523)
17 3fho_A ATP-dependent RNA helic 100.0 1.5E-52 5.1E-57 456.2 19.5 384 121-522 96-491 (508)
18 3oiy_A Reverse gyrase helicase 100.0 3E-50 1E-54 427.7 27.2 326 153-515 9-376 (414)
19 1tf5_A Preprotein translocase 100.0 2.7E-48 9.3E-53 427.7 24.3 355 113-503 35-547 (844)
20 3l9o_A ATP-dependent RNA helic 100.0 3.9E-48 1.3E-52 451.6 26.7 332 143-504 162-600 (1108)
21 4a2p_A RIG-I, retinoic acid in 100.0 8.6E-47 2.9E-51 416.0 25.9 327 162-502 4-509 (556)
22 2zj8_A DNA helicase, putative 100.0 1.2E-46 4E-51 426.9 26.7 332 144-502 2-388 (720)
23 2va8_A SSO2462, SKI2-type heli 100.0 8.9E-46 3E-50 419.8 33.6 336 142-501 7-408 (715)
24 4ddu_A Reverse gyrase; topoiso 100.0 1.8E-46 6.2E-51 437.4 27.0 324 155-515 68-503 (1104)
25 3tbk_A RIG-I helicase domain; 100.0 1.2E-45 3.9E-50 406.7 29.2 323 164-501 3-507 (555)
26 2ykg_A Probable ATP-dependent 100.0 2.1E-46 7.1E-51 424.3 21.3 333 155-501 3-516 (696)
27 2p6r_A Afuhel308 helicase; pro 100.0 4E-46 1.4E-50 421.4 22.5 330 144-501 2-388 (702)
28 2xgj_A ATP-dependent RNA helic 100.0 1.6E-44 5.4E-49 417.8 34.3 312 162-504 84-502 (1010)
29 4a2q_A RIG-I, retinoic acid in 100.0 4.4E-45 1.5E-49 418.1 27.5 327 161-501 244-749 (797)
30 2fsf_A Preprotein translocase 100.0 4E-45 1.4E-49 401.3 25.5 317 162-502 72-584 (853)
31 1gku_B Reverse gyrase, TOP-RG; 100.0 5.9E-46 2E-50 433.4 19.0 324 156-516 48-468 (1054)
32 1wp9_A ATP-dependent RNA helic 100.0 3E-43 1E-47 380.0 33.8 319 165-502 9-476 (494)
33 1nkt_A Preprotein translocase 100.0 4.6E-44 1.6E-48 393.1 24.6 318 161-502 108-618 (922)
34 4a2w_A RIG-I, retinoic acid in 100.0 1.4E-43 4.8E-48 410.1 24.9 327 161-501 244-749 (936)
35 4gl2_A Interferon-induced heli 100.0 2.8E-44 9.4E-49 407.1 18.4 323 164-501 6-518 (699)
36 1gm5_A RECG; helicase, replica 100.0 2.8E-43 9.7E-48 395.4 23.4 320 152-501 356-697 (780)
37 4a4z_A Antiviral helicase SKI2 100.0 1.7E-42 5.7E-47 400.9 28.9 307 162-499 37-490 (997)
38 4f92_B U5 small nuclear ribonu 100.0 1.6E-41 5.6E-46 408.7 33.3 331 150-501 911-1308(1724)
39 2eyq_A TRCF, transcription-rep 100.0 1.2E-40 4.2E-45 390.8 37.9 322 149-501 587-922 (1151)
40 3fe2_A Probable ATP-dependent 100.0 4.1E-41 1.4E-45 330.8 28.1 238 117-363 3-240 (242)
41 2whx_A Serine protease/ntpase/ 100.0 2.4E-43 8.2E-48 389.1 9.8 323 148-523 155-502 (618)
42 4f92_B U5 small nuclear ribonu 100.0 3.7E-41 1.3E-45 405.7 29.2 340 150-503 66-475 (1724)
43 2jlq_A Serine protease subunit 100.0 6.3E-42 2.2E-46 366.6 16.4 312 162-525 1-337 (451)
44 2oca_A DAR protein, ATP-depend 100.0 3E-41 1E-45 368.2 18.3 310 163-499 111-453 (510)
45 1yks_A Genome polyprotein [con 100.0 2.3E-42 7.9E-47 368.4 4.4 290 176-524 4-324 (440)
46 2wv9_A Flavivirin protease NS2 100.0 3.1E-42 1E-46 382.6 5.0 314 157-521 202-555 (673)
47 3o8b_A HCV NS3 protease/helica 100.0 6.1E-41 2.1E-45 366.7 11.4 278 165-504 217-517 (666)
48 2xau_A PRE-mRNA-splicing facto 100.0 8.7E-40 3E-44 369.4 17.7 334 139-501 68-443 (773)
49 2fwr_A DNA repair protein RAD2 100.0 2.8E-39 9.5E-44 349.2 17.3 293 164-502 92-455 (472)
50 2z83_A Helicase/nucleoside tri 100.0 2.1E-39 7E-44 347.7 14.4 276 171-501 12-313 (459)
51 1wrb_A DJVLGB; RNA helicase, D 100.0 9E-38 3.1E-42 309.0 21.9 238 129-372 7-251 (253)
52 3iuy_A Probable ATP-dependent 100.0 2E-37 6.8E-42 301.6 21.7 217 135-360 11-228 (228)
53 2v6i_A RNA helicase; membrane, 100.0 1.7E-37 5.7E-42 330.2 21.2 270 179-499 1-289 (431)
54 3dkp_A Probable ATP-dependent 100.0 5.9E-37 2E-41 301.6 20.5 230 121-363 3-243 (245)
55 3fmo_B ATP-dependent RNA helic 100.0 1.2E-36 4E-41 308.1 22.0 216 130-361 76-298 (300)
56 3bor_A Human initiation factor 100.0 1.3E-36 4.5E-41 297.6 21.1 214 134-361 21-235 (237)
57 3ber_A Probable ATP-dependent 100.0 4.8E-36 1.6E-40 295.7 24.0 207 141-361 41-248 (249)
58 3h1t_A Type I site-specific re 100.0 1.1E-36 3.8E-41 337.8 21.3 304 164-490 177-545 (590)
59 2oxc_A Probable ATP-dependent 100.0 5E-36 1.7E-40 292.1 21.9 212 135-360 16-228 (230)
60 2pl3_A Probable ATP-dependent 100.0 1.3E-35 4.6E-40 290.2 24.8 227 119-361 6-233 (236)
61 3rc3_A ATP-dependent RNA helic 100.0 4.4E-36 1.5E-40 332.2 22.6 278 170-498 145-442 (677)
62 1vec_A ATP-dependent RNA helic 100.0 2.2E-35 7.5E-40 282.3 23.5 203 143-358 3-205 (206)
63 1q0u_A Bstdead; DEAD protein, 100.0 5.1E-36 1.7E-40 289.8 19.2 212 141-362 2-213 (219)
64 1qde_A EIF4A, translation init 100.0 1.7E-35 5.8E-40 287.1 21.7 212 136-362 7-218 (224)
65 2gxq_A Heat resistant RNA depe 100.0 6.6E-35 2.3E-39 279.2 23.3 204 144-360 2-205 (207)
66 3ly5_A ATP-dependent RNA helic 100.0 7.3E-35 2.5E-39 289.5 22.9 204 143-356 52-258 (262)
67 3dmq_A RNA polymerase-associat 100.0 3.4E-35 1.2E-39 340.4 22.9 317 164-499 152-611 (968)
68 1t6n_A Probable ATP-dependent 100.0 1.3E-34 4.6E-39 280.0 21.9 209 138-359 9-219 (220)
69 1z63_A Helicase of the SNF2/RA 100.0 1.5E-34 5.1E-39 314.5 22.1 308 164-501 36-453 (500)
70 3jux_A Protein translocase sub 100.0 5.2E-33 1.8E-37 299.2 33.6 314 162-502 73-588 (822)
71 3mwy_W Chromo domain-containin 100.0 2.4E-32 8.3E-37 312.0 26.5 369 106-502 180-685 (800)
72 2w00_A HSDR, R.ECOR124I; ATP-b 100.0 5.2E-32 1.8E-36 311.6 24.8 309 164-499 270-707 (1038)
73 1z3i_X Similar to RAD54-like; 100.0 1.6E-30 5.5E-35 289.8 35.6 321 165-502 55-529 (644)
74 2p6n_A ATP-dependent RNA helic 100.0 5.5E-31 1.9E-35 248.2 18.5 183 348-530 8-190 (191)
75 2ipc_A Preprotein translocase 100.0 8E-28 2.8E-32 263.5 34.0 315 161-502 76-699 (997)
76 1c4o_A DNA nucleotide excision 100.0 1.3E-28 4.5E-33 274.2 27.5 109 392-501 437-550 (664)
77 2d7d_A Uvrabc system protein B 100.0 3.2E-27 1.1E-31 262.9 29.3 167 329-501 385-556 (661)
78 2jgn_A DBX, DDX3, ATP-dependen 100.0 4E-28 1.4E-32 227.6 16.9 165 365-530 15-181 (185)
79 2hjv_A ATP-dependent RNA helic 99.9 1.4E-26 4.9E-31 212.6 17.1 148 365-513 5-153 (163)
80 1t5i_A C_terminal domain of A 99.9 4.6E-27 1.6E-31 217.8 13.2 157 368-524 4-161 (172)
81 1fuk_A Eukaryotic initiation f 99.9 1.8E-26 6.2E-31 212.4 13.8 155 369-524 3-159 (165)
82 2rb4_A ATP-dependent RNA helic 99.9 8.4E-26 2.9E-30 210.0 15.8 147 367-514 5-159 (175)
83 3eaq_A Heat resistant RNA depe 99.9 3.9E-25 1.3E-29 211.9 15.3 141 374-515 10-151 (212)
84 3b6e_A Interferon-induced heli 99.9 2.2E-24 7.7E-29 207.0 14.7 166 162-339 30-216 (216)
85 3i32_A Heat resistant RNA depe 99.9 2.9E-24 9.8E-29 215.8 15.0 144 370-514 3-147 (300)
86 2vl7_A XPD; helicase, unknown 99.9 4.4E-24 1.5E-28 233.0 14.1 303 161-500 4-520 (540)
87 2yjt_D ATP-dependent RNA helic 99.8 1.2E-25 4.1E-30 207.9 0.0 144 370-514 4-149 (170)
88 3llm_A ATP-dependent RNA helic 99.9 8.1E-22 2.8E-26 192.1 17.2 182 153-356 49-232 (235)
89 3crv_A XPD/RAD3 related DNA he 99.9 3.1E-20 1E-24 203.4 29.3 306 165-501 3-531 (551)
90 1rif_A DAR protein, DNA helica 99.9 5.2E-22 1.8E-26 199.1 11.0 155 164-344 112-266 (282)
91 2fz4_A DNA repair protein RAD2 99.8 4.7E-19 1.6E-23 172.6 16.3 139 164-343 92-231 (237)
92 4a15_A XPD helicase, ATP-depen 99.8 4.4E-18 1.5E-22 187.9 25.2 111 386-500 440-583 (620)
93 1z5z_A Helicase of the SNF2/RA 99.8 1.3E-18 4.4E-23 172.5 12.5 123 379-501 94-224 (271)
94 1w36_D RECD, exodeoxyribonucle 98.9 3.2E-09 1.1E-13 116.9 8.8 146 167-339 151-298 (608)
95 2gk6_A Regulator of nonsense t 98.1 2.3E-05 8E-10 86.5 15.1 70 163-242 178-247 (624)
96 2xzl_A ATP-dependent helicase 98.1 3E-05 1E-09 87.7 15.2 70 163-242 358-427 (802)
97 4b3f_X DNA-binding protein smu 98.1 7.8E-06 2.7E-10 90.8 10.1 68 164-242 188-256 (646)
98 3hgt_A HDA1 complex subunit 3; 98.0 1.4E-05 4.6E-10 79.5 9.8 119 379-502 110-238 (328)
99 2wjy_A Regulator of nonsense t 98.0 5.3E-05 1.8E-09 85.6 14.4 70 163-242 354-423 (800)
100 3e1s_A Exodeoxyribonuclease V, 98.0 3.1E-05 1.1E-09 84.4 11.5 125 165-337 189-313 (574)
101 3lfu_A DNA helicase II; SF1 he 97.9 0.00043 1.5E-08 76.8 20.9 72 164-244 8-79 (647)
102 3upu_A ATP-dependent DNA helic 97.8 5.8E-05 2E-09 80.2 10.8 69 161-239 21-94 (459)
103 2o0j_A Terminase, DNA packagin 97.3 0.0025 8.5E-08 65.4 14.3 73 165-246 163-235 (385)
104 3cpe_A Terminase, DNA packagin 97.0 0.012 4E-07 64.4 16.5 73 165-246 163-235 (592)
105 3ec2_A DNA replication protein 96.8 0.0061 2.1E-07 55.4 10.4 31 167-197 16-55 (180)
106 2kjq_A DNAA-related protein; s 96.2 0.0047 1.6E-07 54.5 5.3 42 298-340 82-124 (149)
107 3vkw_A Replicase large subunit 96.0 0.012 4.1E-07 61.1 7.9 107 182-339 163-269 (446)
108 1l8q_A Chromosomal replication 95.8 0.043 1.5E-06 54.9 10.8 18 180-197 37-54 (324)
109 2j9r_A Thymidine kinase; TK1, 95.8 0.013 4.5E-07 54.6 6.3 40 180-230 28-67 (214)
110 1xx6_A Thymidine kinase; NESG, 95.8 0.024 8.3E-07 52.1 8.1 38 180-228 8-45 (191)
111 2orw_A Thymidine kinase; TMTK, 95.8 0.014 4.7E-07 53.4 6.3 40 179-229 2-41 (184)
112 3te6_A Regulatory protein SIR3 95.7 0.093 3.2E-06 52.2 12.7 20 179-198 44-63 (318)
113 2b8t_A Thymidine kinase; deoxy 95.5 0.013 4.3E-07 55.4 5.1 92 179-312 11-102 (223)
114 2z4s_A Chromosomal replication 95.4 0.092 3.2E-06 55.0 11.8 43 299-341 194-238 (440)
115 1pjr_A PCRA; DNA repair, DNA r 95.3 0.036 1.2E-06 62.1 9.0 72 164-244 10-81 (724)
116 1uaa_A REP helicase, protein ( 95.3 0.023 8E-07 63.1 7.4 71 165-244 2-72 (673)
117 2orv_A Thymidine kinase; TP4A 95.2 0.036 1.2E-06 52.2 7.2 40 179-229 18-57 (234)
118 3kl4_A SRP54, signal recogniti 95.2 0.13 4.6E-06 53.3 12.1 54 298-351 178-234 (433)
119 3bos_A Putative DNA replicatio 94.8 0.035 1.2E-06 52.4 6.1 19 179-197 51-69 (242)
120 1d2n_A N-ethylmaleimide-sensit 94.7 0.26 8.7E-06 47.7 12.3 17 181-197 65-81 (272)
121 2w58_A DNAI, primosome compone 94.7 0.14 4.7E-06 47.1 9.7 17 181-197 55-71 (202)
122 3u4q_A ATP-dependent helicase/ 94.5 0.052 1.8E-06 64.5 7.8 73 164-243 9-81 (1232)
123 2qgz_A Helicase loader, putati 94.5 0.19 6.4E-06 49.9 10.6 19 180-198 152-170 (308)
124 1w4r_A Thymidine kinase; type 94.2 0.07 2.4E-06 48.9 6.2 39 179-228 19-57 (195)
125 3e2i_A Thymidine kinase; Zn-bi 94.2 0.048 1.6E-06 50.7 5.1 40 179-229 27-66 (219)
126 2zpa_A Uncharacterized protein 94.1 0.08 2.7E-06 57.8 7.4 112 165-340 175-288 (671)
127 2chg_A Replication factor C sm 94.0 0.59 2E-05 42.8 12.6 39 298-337 101-139 (226)
128 1fnn_A CDC6P, cell division co 94.0 0.21 7.2E-06 50.8 10.2 16 182-197 46-61 (389)
129 2v1u_A Cell division control p 93.8 0.16 5.4E-06 51.6 8.9 19 179-197 43-61 (387)
130 1g5t_A COB(I)alamin adenosyltr 93.7 0.37 1.3E-05 44.1 10.0 52 297-348 118-171 (196)
131 2p6n_A ATP-dependent RNA helic 93.7 0.56 1.9E-05 42.8 11.4 72 219-306 54-129 (191)
132 2p65_A Hypothetical protein PF 93.5 0.26 8.9E-06 44.0 8.9 18 180-197 43-60 (187)
133 2hjv_A ATP-dependent RNA helic 93.5 0.49 1.7E-05 41.8 10.4 74 218-307 34-111 (163)
134 1gm5_A RECG; helicase, replica 93.3 0.16 5.6E-06 56.9 8.5 75 393-467 416-495 (780)
135 1a5t_A Delta prime, HOLB; zinc 93.2 0.35 1.2E-05 48.4 10.0 33 166-198 3-42 (334)
136 3dm5_A SRP54, signal recogniti 92.9 0.73 2.5E-05 47.8 12.1 53 299-351 182-235 (443)
137 3u61_B DNA polymerase accessor 92.9 0.23 7.9E-06 49.3 8.2 40 298-337 104-143 (324)
138 2qby_B CDC6 homolog 3, cell di 92.8 0.25 8.7E-06 50.2 8.5 18 180-197 45-62 (384)
139 3eaq_A Heat resistant RNA depe 92.5 0.72 2.5E-05 42.7 10.4 72 218-305 30-105 (212)
140 3h4m_A Proteasome-activating n 92.4 0.11 3.7E-06 50.7 4.8 55 141-197 12-68 (285)
141 1fuk_A Eukaryotic initiation f 92.4 0.77 2.6E-05 40.5 10.1 74 218-307 29-106 (165)
142 2rb4_A ATP-dependent RNA helic 92.4 0.54 1.9E-05 42.0 9.2 72 218-305 33-108 (175)
143 2r6a_A DNAB helicase, replicat 92.2 0.84 2.9E-05 47.8 11.7 24 179-202 202-225 (454)
144 3pfi_A Holliday junction ATP-d 92.2 0.5 1.7E-05 47.1 9.6 17 181-197 56-72 (338)
145 2dr3_A UPF0273 protein PH0284; 92.1 1.2 4.1E-05 41.8 11.7 50 179-240 22-71 (247)
146 2qby_A CDC6 homolog 1, cell di 92.1 0.34 1.2E-05 49.0 8.3 18 180-197 45-62 (386)
147 3syl_A Protein CBBX; photosynt 92.0 0.22 7.5E-06 49.0 6.5 19 180-198 67-85 (309)
148 3oiy_A Reverse gyrase helicase 91.9 0.4 1.4E-05 49.4 8.7 76 392-467 62-144 (414)
149 1t5i_A C_terminal domain of A 91.6 0.7 2.4E-05 41.2 8.9 74 218-307 30-107 (172)
150 2q6t_A DNAB replication FORK h 91.5 0.83 2.8E-05 47.7 10.7 116 179-314 199-325 (444)
151 1sxj_E Activator 1 40 kDa subu 90.7 0.63 2.2E-05 46.7 8.5 42 298-340 133-174 (354)
152 2w0m_A SSO2452; RECA, SSPF, un 90.3 1.5 5E-05 40.6 10.3 20 179-198 22-41 (235)
153 1iqp_A RFCS; clamp loader, ext 90.2 1.2 4E-05 43.9 9.9 42 298-341 109-150 (327)
154 1sxj_D Activator 1 41 kDa subu 89.9 1.3 4.4E-05 44.2 10.1 39 298-337 132-170 (353)
155 3pvs_A Replication-associated 89.9 0.74 2.5E-05 48.1 8.4 17 181-197 51-67 (447)
156 1n0w_A DNA repair protein RAD5 89.8 2 6.8E-05 40.1 10.8 22 179-200 23-44 (243)
157 2gno_A DNA polymerase III, gam 89.5 1.2 4.1E-05 43.9 9.1 44 297-342 80-123 (305)
158 2jgn_A DBX, DDX3, ATP-dependen 89.4 1 3.6E-05 40.6 8.1 72 218-305 45-120 (185)
159 4a1f_A DNAB helicase, replicat 89.2 0.46 1.6E-05 47.6 5.9 50 179-240 45-94 (338)
160 1hqc_A RUVB; extended AAA-ATPa 89.2 0.77 2.6E-05 45.3 7.6 18 180-197 38-55 (324)
161 1cr0_A DNA primase/helicase; R 89.1 0.73 2.5E-05 45.0 7.3 21 179-199 34-54 (296)
162 2px0_A Flagellar biosynthesis 88.9 2 6.8E-05 42.1 10.2 21 179-199 104-124 (296)
163 2i4i_A ATP-dependent RNA helic 88.6 1.7 5.8E-05 44.4 10.0 72 218-305 275-350 (417)
164 2z43_A DNA repair and recombin 88.4 1.8 6.3E-05 42.9 9.8 58 179-241 106-164 (324)
165 2eyq_A TRCF, transcription-rep 88.4 1 3.5E-05 52.9 9.0 76 392-467 650-730 (1151)
166 3hjh_A Transcription-repair-co 88.1 1.8 6.1E-05 45.6 9.8 51 179-243 13-63 (483)
167 3i32_A Heat resistant RNA depe 87.8 1.9 6.5E-05 42.3 9.3 71 219-305 28-102 (300)
168 4ddu_A Reverse gyrase; topoiso 87.8 0.98 3.4E-05 52.8 8.3 77 392-468 119-202 (1104)
169 2ehv_A Hypothetical protein PH 87.7 0.91 3.1E-05 42.8 6.8 46 298-343 134-184 (251)
170 3i5x_A ATP-dependent RNA helic 87.6 5.6 0.00019 42.5 13.8 78 218-308 338-419 (563)
171 2cvh_A DNA repair and recombin 87.6 2.9 0.0001 38.2 10.2 21 179-199 19-39 (220)
172 1nlf_A Regulatory protein REPA 87.1 7.7 0.00026 37.2 13.2 25 177-201 27-51 (279)
173 1t6n_A Probable ATP-dependent 87.1 2.4 8.3E-05 39.0 9.2 71 394-467 82-163 (220)
174 3cmu_A Protein RECA, recombina 86.7 1.1 3.7E-05 55.1 7.9 47 174-231 1415-1467(2050)
175 1sxj_C Activator 1 40 kDa subu 86.3 2 6.8E-05 42.8 8.7 39 298-337 109-147 (340)
176 3hr8_A Protein RECA; alpha and 86.1 1.7 5.8E-05 43.8 7.9 42 179-231 60-101 (356)
177 3sqw_A ATP-dependent RNA helic 86.0 7.7 0.00026 41.7 13.8 79 218-309 287-369 (579)
178 1sxj_B Activator 1 37 kDa subu 86.0 2 6.8E-05 42.1 8.4 38 299-337 107-144 (323)
179 3co5_A Putative two-component 85.8 0.63 2.1E-05 40.1 4.0 21 177-197 24-44 (143)
180 1w5s_A Origin recognition comp 85.5 1.7 5.7E-05 44.4 7.8 17 181-197 51-69 (412)
181 3bh0_A DNAB-like replicative h 85.5 4.5 0.00015 39.8 10.7 52 179-242 67-118 (315)
182 3hu3_A Transitional endoplasmi 85.3 1.1 3.9E-05 47.2 6.5 19 179-197 237-255 (489)
183 3fht_A ATP-dependent RNA helic 85.2 5.7 0.00019 40.2 11.8 72 218-305 265-340 (412)
184 3m6a_A ATP-dependent protease 85.2 0.88 3E-05 48.8 5.7 19 179-197 107-125 (543)
185 3fe2_A Probable ATP-dependent 85.1 2.4 8.2E-05 39.8 8.2 71 393-467 101-181 (242)
186 3n70_A Transport activator; si 85.1 0.63 2.2E-05 40.1 3.7 20 178-197 22-41 (145)
187 1e9r_A Conjugal transfer prote 84.9 0.87 3E-05 47.3 5.4 44 179-233 52-95 (437)
188 1hv8_A Putative ATP-dependent 84.5 2.2 7.6E-05 42.4 8.1 74 218-307 237-314 (367)
189 2zr9_A Protein RECA, recombina 84.1 1.1 3.7E-05 45.2 5.4 39 179-228 60-98 (349)
190 1ls1_A Signal recognition part 84.1 8.1 0.00028 37.6 11.7 19 179-197 97-115 (295)
191 1xp8_A RECA protein, recombina 83.6 3.2 0.00011 41.9 8.7 39 179-228 73-111 (366)
192 2i1q_A DNA repair and recombin 83.3 2.5 8.6E-05 41.7 7.7 22 179-200 97-118 (322)
193 3ber_A Probable ATP-dependent 82.9 4.5 0.00016 38.2 9.1 71 394-468 111-192 (249)
194 1s2m_A Putative ATP-dependent 82.8 5.4 0.00019 40.2 10.3 73 218-306 257-333 (400)
195 1oyw_A RECQ helicase, ATP-depe 82.7 1.8 6.1E-05 46.2 6.8 59 394-452 65-123 (523)
196 2v1x_A ATP-dependent DNA helic 82.5 1.5 5.2E-05 47.5 6.2 59 394-452 84-144 (591)
197 3pey_A ATP-dependent RNA helic 82.3 3.8 0.00013 41.2 8.9 77 218-310 242-322 (395)
198 1jr3_A DNA polymerase III subu 82.3 6.2 0.00021 39.4 10.4 16 182-197 40-55 (373)
199 1xti_A Probable ATP-dependent 82.0 3.7 0.00012 41.3 8.6 75 218-308 249-327 (391)
200 2l8b_A Protein TRAI, DNA helic 81.5 1.5 5.2E-05 39.3 4.7 58 167-234 36-95 (189)
201 1v5w_A DMC1, meiotic recombina 81.2 4.9 0.00017 40.1 9.0 51 174-229 111-166 (343)
202 2eyu_A Twitching motility prot 80.7 0.84 2.9E-05 43.9 3.0 21 177-197 22-42 (261)
203 3e70_C DPA, signal recognition 80.6 15 0.00052 36.3 12.2 52 300-351 212-264 (328)
204 3bor_A Human initiation factor 80.5 3.5 0.00012 38.6 7.3 72 393-467 97-178 (237)
205 2j0s_A ATP-dependent RNA helic 80.4 4.4 0.00015 41.2 8.6 71 219-305 276-350 (410)
206 3bgw_A DNAB-like replicative h 80.4 3.5 0.00012 42.9 7.8 50 179-240 196-245 (444)
207 2yhs_A FTSY, cell division pro 80.2 13 0.00044 39.0 12.0 17 181-197 294-310 (503)
208 2yjt_D ATP-dependent RNA helic 81.3 0.35 1.2E-05 43.1 0.0 73 218-306 29-105 (170)
209 2d7d_A Uvrabc system protein B 80.2 4.2 0.00014 44.7 8.7 78 218-311 444-525 (661)
210 3dmn_A Putative DNA helicase; 80.0 15 0.00051 32.4 11.0 64 393-471 60-123 (174)
211 3io5_A Recombination and repai 79.8 2.9 9.8E-05 41.3 6.4 42 182-232 30-71 (333)
212 2fna_A Conserved hypothetical 79.5 47 0.0016 32.2 16.5 53 283-340 124-179 (357)
213 2gxq_A Heat resistant RNA depe 79.4 4.4 0.00015 36.6 7.5 71 393-467 71-149 (207)
214 2pl3_A Probable ATP-dependent 79.3 3 0.0001 38.8 6.4 70 393-467 96-176 (236)
215 2oap_1 GSPE-2, type II secreti 79.2 2.3 7.8E-05 45.1 6.0 40 155-196 236-276 (511)
216 3iuy_A Probable ATP-dependent 79.2 4.2 0.00014 37.6 7.3 72 393-468 93-173 (228)
217 1qvr_A CLPB protein; coiled co 79.1 7.1 0.00024 44.3 10.5 18 180-197 191-208 (854)
218 1vec_A ATP-dependent RNA helic 79.1 4.8 0.00016 36.4 7.5 70 394-467 71-151 (206)
219 3cf2_A TER ATPase, transitiona 78.9 2.8 9.4E-05 47.0 6.7 54 141-197 472-528 (806)
220 3hws_A ATP-dependent CLP prote 78.8 2.8 9.7E-05 42.1 6.4 19 179-197 50-68 (363)
221 2oxc_A Probable ATP-dependent 78.6 3.3 0.00011 38.5 6.4 70 393-467 91-171 (230)
222 2db3_A ATP-dependent RNA helic 77.8 5.8 0.0002 40.9 8.6 69 221-305 302-374 (434)
223 1c4o_A DNA nucleotide excision 77.6 7.3 0.00025 42.8 9.6 78 218-311 438-519 (664)
224 3ly5_A ATP-dependent RNA helic 77.4 8.3 0.00029 36.6 9.0 72 393-468 125-207 (262)
225 3jvv_A Twitching mobility prot 76.8 2.3 8E-05 42.8 5.0 18 179-196 122-139 (356)
226 1wp9_A ATP-dependent RNA helic 76.6 12 0.0004 38.4 10.7 76 218-309 360-447 (494)
227 2ffh_A Protein (FFH); SRP54, s 76.0 42 0.0015 34.3 14.3 20 179-198 97-116 (425)
228 4b4t_M 26S protease regulatory 75.5 1 3.5E-05 46.7 1.9 55 140-197 175-232 (434)
229 1yks_A Genome polyprotein [con 75.0 3.8 0.00013 42.5 6.2 69 219-305 177-246 (440)
230 3b85_A Phosphate starvation-in 74.6 3 0.0001 38.4 4.8 35 163-197 5-39 (208)
231 3nbx_X ATPase RAVA; AAA+ ATPas 74.5 3.4 0.00011 43.7 5.6 36 162-197 23-58 (500)
232 1wrb_A DJVLGB; RNA helicase, D 74.1 10 0.00034 35.6 8.6 70 394-467 100-179 (253)
233 3cmw_A Protein RECA, recombina 73.6 5.5 0.00019 48.3 7.7 122 180-344 1431-1571(1706)
234 3lda_A DNA repair protein RAD5 73.5 22 0.00075 36.2 11.3 51 173-228 166-221 (400)
235 3cmu_A Protein RECA, recombina 73.3 7.1 0.00024 48.1 8.6 46 179-236 1080-1125(2050)
236 1pzn_A RAD51, DNA repair and r 72.8 8.3 0.00028 38.6 7.9 27 173-199 119-150 (349)
237 1p9r_A General secretion pathw 72.8 4.9 0.00017 41.4 6.2 27 170-196 155-183 (418)
238 4ag6_A VIRB4 ATPase, type IV s 72.4 3.2 0.00011 42.3 4.8 42 179-231 34-75 (392)
239 2zts_A Putative uncharacterize 72.2 3.2 0.00011 38.8 4.4 53 179-242 29-81 (251)
240 1qde_A EIF4A, translation init 72.0 5.8 0.0002 36.4 6.2 70 393-467 81-160 (224)
241 1kgd_A CASK, peripheral plasma 72.0 2.1 7.1E-05 38.3 2.9 20 178-197 3-22 (180)
242 2j37_W Signal recognition part 71.1 32 0.0011 36.2 12.1 18 181-198 102-119 (504)
243 2r44_A Uncharacterized protein 70.9 2.4 8E-05 42.0 3.3 23 175-197 41-63 (331)
244 2gza_A Type IV secretion syste 70.6 2.8 9.6E-05 42.3 3.8 20 177-196 172-191 (361)
245 3cf0_A Transitional endoplasmi 70.3 2.1 7.2E-05 41.9 2.7 56 141-197 10-66 (301)
246 3a8t_A Adenylate isopentenyltr 70.2 2.2 7.6E-05 42.4 2.8 18 180-197 40-57 (339)
247 2oca_A DAR protein, ATP-depend 70.1 11 0.00036 39.7 8.4 76 219-309 347-426 (510)
248 2bjv_A PSP operon transcriptio 69.7 3.1 0.00011 39.6 3.7 19 179-197 28-46 (265)
249 1jbk_A CLPB protein; beta barr 69.7 2.6 8.8E-05 37.3 3.0 18 180-197 43-60 (195)
250 1ofh_A ATP-dependent HSL prote 69.2 9.5 0.00032 36.8 7.3 19 179-197 49-67 (310)
251 4akg_A Glutathione S-transfera 69.0 4.9 0.00017 51.1 6.1 49 150-199 890-942 (2695)
252 1gku_B Reverse gyrase, TOP-RG; 68.8 6.3 0.00022 45.8 6.7 76 390-467 95-180 (1054)
253 2qz4_A Paraplegin; AAA+, SPG7, 68.8 2.4 8.2E-05 40.1 2.7 19 179-197 38-56 (262)
254 3vaa_A Shikimate kinase, SK; s 68.5 2.8 9.7E-05 38.0 3.0 20 179-198 24-43 (199)
255 1qhx_A CPT, protein (chloramph 68.2 2.2 7.6E-05 37.7 2.2 18 180-197 3-20 (178)
256 1lvg_A Guanylate kinase, GMP k 68.1 3 0.0001 37.9 3.1 19 179-197 3-21 (198)
257 3trf_A Shikimate kinase, SK; a 67.9 2.9 0.0001 37.2 3.0 19 180-198 5-23 (185)
258 3eiq_A Eukaryotic initiation f 67.5 5.1 0.00017 40.6 5.1 72 218-305 279-354 (414)
259 2lnd_A De novo designed protei 67.4 34 0.0011 25.6 8.0 62 379-441 36-99 (112)
260 2v6i_A RNA helicase; membrane, 67.3 7.4 0.00025 40.1 6.3 67 219-303 171-238 (431)
261 3o8b_A HCV NS3 protease/helica 67.1 5.5 0.00019 43.6 5.4 67 218-304 395-461 (666)
262 3iij_A Coilin-interacting nucl 66.7 2.5 8.6E-05 37.5 2.3 21 178-198 9-29 (180)
263 3foz_A TRNA delta(2)-isopenten 66.7 2.9 9.9E-05 41.1 2.8 16 182-197 12-27 (316)
264 1z5z_A Helicase of the SNF2/RA 66.7 21 0.00073 34.0 9.1 95 188-308 92-192 (271)
265 3tau_A Guanylate kinase, GMP k 66.7 3.2 0.00011 38.0 3.0 19 179-197 7-25 (208)
266 3exa_A TRNA delta(2)-isopenten 66.2 2.7 9.4E-05 41.3 2.5 17 181-197 4-20 (322)
267 2pt7_A CAG-ALFA; ATPase, prote 65.7 3.3 0.00011 41.2 3.1 19 178-196 169-187 (330)
268 3ney_A 55 kDa erythrocyte memb 65.4 3.5 0.00012 37.7 2.9 20 178-197 17-36 (197)
269 1u0j_A DNA replication protein 65.2 12 0.0004 35.9 6.7 44 152-198 73-122 (267)
270 2qmh_A HPR kinase/phosphorylas 65.0 2.9 0.0001 38.2 2.3 18 179-196 33-50 (205)
271 3dkp_A Probable ATP-dependent 64.9 3 0.0001 39.1 2.5 73 393-468 97-181 (245)
272 1um8_A ATP-dependent CLP prote 64.7 11 0.00039 37.7 7.0 18 180-197 72-89 (376)
273 2l82_A Designed protein OR32; 64.2 28 0.00096 27.7 7.4 51 397-447 5-55 (162)
274 1y63_A LMAJ004144AAA protein; 64.1 3.1 0.00011 37.2 2.3 19 179-197 9-27 (184)
275 1tf7_A KAIC; homohexamer, hexa 64.1 42 0.0014 35.4 11.6 21 179-199 280-300 (525)
276 2ze6_A Isopentenyl transferase 63.9 3.6 0.00012 39.1 2.8 15 183-197 4-18 (253)
277 2xau_A PRE-mRNA-splicing facto 63.8 13 0.00044 41.6 7.8 82 218-305 302-393 (773)
278 1ex7_A Guanylate kinase; subst 63.8 3.3 0.00011 37.4 2.4 16 181-196 2-17 (186)
279 3lw7_A Adenylate kinase relate 63.7 3 0.0001 36.4 2.1 16 182-197 3-18 (179)
280 2qor_A Guanylate kinase; phosp 63.3 3.6 0.00012 37.5 2.6 20 178-197 10-29 (204)
281 4b4t_J 26S protease regulatory 63.2 2.5 8.6E-05 43.2 1.6 54 141-197 143-199 (405)
282 2wv9_A Flavivirin protease NS2 63.1 9.1 0.00031 42.0 6.3 69 218-304 409-478 (673)
283 2j41_A Guanylate kinase; GMP, 63.1 3.9 0.00013 37.0 2.9 20 178-197 4-23 (207)
284 1zp6_A Hypothetical protein AT 62.5 3.7 0.00013 36.6 2.6 19 179-197 8-26 (191)
285 1wv9_A Rhodanese homolog TT165 62.1 5.7 0.00019 31.0 3.3 35 395-429 54-88 (94)
286 2xxa_A Signal recognition part 62.1 23 0.00078 36.5 8.7 19 181-199 101-119 (433)
287 1kag_A SKI, shikimate kinase I 62.0 4.9 0.00017 35.2 3.2 18 180-197 4-21 (173)
288 3rc3_A ATP-dependent RNA helic 61.9 20 0.00067 39.4 8.6 73 222-311 323-401 (677)
289 1ojl_A Transcriptional regulat 61.6 5 0.00017 39.3 3.5 19 179-197 24-42 (304)
290 1kht_A Adenylate kinase; phosp 61.1 3.7 0.00013 36.6 2.2 19 179-197 2-20 (192)
291 3nwj_A ATSK2; P loop, shikimat 61.0 5.5 0.00019 37.8 3.5 21 178-198 46-66 (250)
292 2jlq_A Serine protease subunit 61.0 11 0.00038 39.0 6.2 68 219-304 188-256 (451)
293 3crm_A TRNA delta(2)-isopenten 60.9 4.3 0.00015 40.2 2.8 16 182-197 7-22 (323)
294 3tr0_A Guanylate kinase, GMP k 60.8 4.8 0.00016 36.3 3.0 19 179-197 6-24 (205)
295 3gk5_A Uncharacterized rhodane 60.8 5.3 0.00018 32.2 2.9 37 393-429 54-90 (108)
296 3a00_A Guanylate kinase, GMP k 60.6 5.2 0.00018 35.7 3.2 17 181-197 2-18 (186)
297 1j8m_F SRP54, signal recogniti 60.6 77 0.0026 30.5 11.9 20 180-199 98-117 (297)
298 3g5j_A Putative ATP/GTP bindin 60.4 9 0.00031 31.8 4.5 35 395-429 90-125 (134)
299 1fuu_A Yeast initiation factor 60.3 23 0.00077 35.3 8.3 70 393-467 88-167 (394)
300 3uk6_A RUVB-like 2; hexameric 60.3 4.6 0.00016 40.4 3.0 19 180-198 70-88 (368)
301 1z6g_A Guanylate kinase; struc 60.0 5.6 0.00019 36.7 3.3 20 178-197 21-40 (218)
302 2whx_A Serine protease/ntpase/ 59.9 19 0.00065 39.0 8.0 68 219-304 355-423 (618)
303 3b9p_A CG5977-PA, isoform A; A 59.9 4.5 0.00015 39.1 2.8 19 179-197 53-71 (297)
304 1vma_A Cell division protein F 59.8 43 0.0015 32.5 9.9 19 179-197 103-121 (306)
305 4b4t_L 26S protease subunit RP 59.6 3 0.0001 43.1 1.5 55 140-197 175-232 (437)
306 2x8a_A Nuclear valosin-contain 59.4 1.9 6.4E-05 41.7 -0.1 54 141-197 5-61 (274)
307 4a2q_A RIG-I, retinoic acid in 59.3 14 0.00048 41.4 7.1 70 394-467 296-376 (797)
308 3nwn_A Kinesin-like protein KI 59.2 6.4 0.00022 39.5 3.8 24 173-196 96-121 (359)
309 1u6p_A GAG polyprotein; MLV, A 59.2 3.4 0.00012 29.2 1.3 22 544-565 23-44 (56)
310 2ewv_A Twitching motility prot 58.9 4.3 0.00015 41.1 2.5 19 178-196 134-152 (372)
311 1lv7_A FTSH; alpha/beta domain 58.8 4.9 0.00017 38.0 2.8 18 180-197 45-62 (257)
312 3fmp_B ATP-dependent RNA helic 58.7 2 6.9E-05 45.0 0.0 70 219-304 333-406 (479)
313 3d3q_A TRNA delta(2)-isopenten 58.6 5 0.00017 40.0 2.8 16 182-197 9-24 (340)
314 3tbk_A RIG-I helicase domain; 58.6 9.3 0.00032 40.3 5.3 70 394-467 52-132 (555)
315 3kb2_A SPBC2 prophage-derived 58.5 4.2 0.00014 35.4 2.1 16 182-197 3-18 (173)
316 3eme_A Rhodanese-like domain p 58.5 5.3 0.00018 31.8 2.6 36 393-428 55-90 (103)
317 2ius_A DNA translocase FTSK; n 58.4 10 0.00035 40.0 5.3 20 179-198 166-185 (512)
318 3eph_A TRNA isopentenyltransfe 57.7 5.3 0.00018 40.7 2.9 15 183-197 5-19 (409)
319 3iwh_A Rhodanese-like domain p 57.5 5.7 0.0002 31.9 2.6 36 393-428 55-90 (103)
320 1ly1_A Polynucleotide kinase; 57.4 4.5 0.00015 35.5 2.1 16 182-197 4-19 (181)
321 4b4t_I 26S protease regulatory 57.3 5 0.00017 41.3 2.6 55 140-197 176-233 (437)
322 4gp7_A Metallophosphoesterase; 57.3 4 0.00014 36.0 1.8 20 179-198 8-27 (171)
323 3foj_A Uncharacterized protein 57.2 5.5 0.00019 31.5 2.4 37 393-429 55-91 (100)
324 1knq_A Gluconate kinase; ALFA/ 57.1 4.1 0.00014 35.9 1.8 19 179-197 7-25 (175)
325 1tue_A Replication protein E1; 56.8 13 0.00046 34.0 5.2 45 151-197 27-75 (212)
326 1a6b_B Momulv, zinc finger pro 56.8 5 0.00017 26.1 1.7 22 544-565 10-31 (40)
327 4eun_A Thermoresistant glucoki 56.8 6.2 0.00021 35.7 3.0 19 179-197 28-46 (200)
328 1bg2_A Kinesin; motor protein, 56.6 7.4 0.00025 38.5 3.7 24 173-196 69-94 (325)
329 4b4t_H 26S protease regulatory 56.6 5.1 0.00018 41.6 2.6 54 141-197 204-260 (467)
330 4a2p_A RIG-I, retinoic acid in 56.6 13 0.00044 39.3 6.0 70 394-467 55-135 (556)
331 3fmo_B ATP-dependent RNA helic 56.2 9.2 0.00031 37.2 4.3 68 394-468 162-241 (300)
332 1znw_A Guanylate kinase, GMP k 56.1 6.5 0.00022 35.8 3.1 22 176-197 16-37 (207)
333 1xwi_A SKD1 protein; VPS4B, AA 55.7 5.8 0.0002 39.1 2.8 50 142-197 8-62 (322)
334 1u94_A RECA protein, recombina 55.7 11 0.00037 37.8 4.9 39 179-228 62-100 (356)
335 3eie_A Vacuolar protein sortin 55.7 6 0.00021 38.9 2.9 51 141-197 13-68 (322)
336 1f2t_A RAD50 ABC-ATPase; DNA d 55.5 7.9 0.00027 33.3 3.3 15 182-196 25-39 (149)
337 1rj9_A FTSY, signal recognitio 55.3 12 0.0004 36.6 4.9 18 180-197 102-119 (304)
338 4b4t_K 26S protease regulatory 55.2 4.2 0.00014 42.0 1.7 54 141-197 167-223 (428)
339 3t15_A Ribulose bisphosphate c 55.0 6.1 0.00021 38.3 2.8 17 181-197 37-53 (293)
340 2y65_A Kinesin, kinesin heavy 54.6 8.3 0.00028 38.8 3.7 24 173-196 76-101 (365)
341 1xjc_A MOBB protein homolog; s 54.5 14 0.00048 32.6 4.8 14 183-196 7-20 (169)
342 3vkg_A Dynein heavy chain, cyt 54.4 14 0.00047 47.8 6.3 48 150-198 873-924 (3245)
343 3b6u_A Kinesin-like protein KI 54.4 8.6 0.00029 38.8 3.8 24 173-196 93-118 (372)
344 2qp9_X Vacuolar protein sortin 54.3 7.1 0.00024 39.1 3.2 18 180-197 84-101 (355)
345 4etp_A Kinesin-like protein KA 54.2 9.1 0.00031 39.1 4.0 25 173-197 132-158 (403)
346 2nr8_A Kinesin-like protein KI 54.2 8.8 0.0003 38.5 3.8 24 173-196 95-120 (358)
347 3cm0_A Adenylate kinase; ATP-b 54.0 5.3 0.00018 35.4 2.0 19 179-197 3-21 (186)
348 1s96_A Guanylate kinase, GMP k 54.0 7.3 0.00025 36.1 3.0 21 177-197 13-33 (219)
349 2r8r_A Sensor protein; KDPD, P 54.0 12 0.00042 34.8 4.5 21 182-202 8-28 (228)
350 4a14_A Kinesin, kinesin-like p 53.7 8.6 0.00029 38.4 3.7 24 173-196 75-100 (344)
351 3dc4_A Kinesin-like protein NO 53.6 7.8 0.00027 38.7 3.3 23 174-196 87-111 (344)
352 2vvg_A Kinesin-2; motor protei 53.5 8.8 0.0003 38.3 3.7 24 173-196 81-106 (350)
353 1ixz_A ATP-dependent metallopr 53.5 6.7 0.00023 36.9 2.7 54 141-197 11-66 (254)
354 3gbj_A KIF13B protein; kinesin 53.5 9.1 0.00031 38.3 3.8 24 173-196 84-109 (354)
355 4f4c_A Multidrug resistance pr 53.4 11 0.00036 45.1 5.0 40 297-337 1233-1272(1321)
356 1w36_B RECB, exodeoxyribonucle 53.4 16 0.00054 43.0 6.5 66 179-245 16-82 (1180)
357 1v8k_A Kinesin-like protein KI 53.4 9.2 0.00032 39.0 3.9 24 173-196 146-171 (410)
358 2c9o_A RUVB-like 1; hexameric 53.2 6.7 0.00023 40.8 2.9 19 179-197 62-80 (456)
359 1q0u_A Bstdead; DEAD protein, 53.1 11 0.00037 34.4 4.1 70 394-467 72-155 (219)
360 1goj_A Kinesin, kinesin heavy 53.0 8.8 0.0003 38.5 3.6 23 174-196 73-97 (355)
361 3uie_A Adenylyl-sulfate kinase 53.0 6.6 0.00023 35.5 2.5 19 179-197 24-42 (200)
362 1t5c_A CENP-E protein, centrom 53.0 9.4 0.00032 38.1 3.8 25 173-197 69-95 (349)
363 2h58_A Kinesin-like protein KI 52.9 9.1 0.00031 37.9 3.7 25 172-196 71-97 (330)
364 3lre_A Kinesin-like protein KI 52.8 8.9 0.0003 38.4 3.6 24 173-196 97-122 (355)
365 1g41_A Heat shock protein HSLU 52.7 18 0.0006 37.4 5.9 18 180-197 50-67 (444)
366 2c95_A Adenylate kinase 1; tra 52.6 6.8 0.00023 34.9 2.5 19 179-197 8-26 (196)
367 1njg_A DNA polymerase III subu 52.6 10 0.00035 34.6 3.9 16 182-197 47-62 (250)
368 1x88_A Kinesin-like protein KI 52.5 8.8 0.0003 38.5 3.5 24 173-196 80-105 (359)
369 3t61_A Gluconokinase; PSI-biol 52.3 6 0.00021 35.7 2.1 17 181-197 19-35 (202)
370 1qxn_A SUD, sulfide dehydrogen 52.2 13 0.00045 31.3 4.1 37 393-429 81-118 (137)
371 2rhm_A Putative kinase; P-loop 52.1 5.8 0.0002 35.3 2.0 18 180-197 5-22 (193)
372 2jtq_A Phage shock protein E; 52.0 22 0.00074 26.8 5.1 37 392-429 39-76 (85)
373 3cob_A Kinesin heavy chain-lik 51.9 8.2 0.00028 38.9 3.2 24 173-196 71-96 (369)
374 3t0q_A AGR253WP; kinesin, alph 51.9 9 0.00031 38.3 3.5 25 173-197 77-103 (349)
375 3flh_A Uncharacterized protein 51.9 7.9 0.00027 32.0 2.6 36 394-429 71-108 (124)
376 2zfi_A Kinesin-like protein KI 51.8 9.7 0.00033 38.3 3.7 24 173-196 81-106 (366)
377 2fsx_A RV0390, COG0607: rhodan 51.7 16 0.00055 31.1 4.7 37 393-429 79-116 (148)
378 1g8p_A Magnesium-chelatase 38 51.6 8.5 0.00029 38.0 3.3 19 179-197 44-62 (350)
379 3kta_A Chromosome segregation 51.6 8.8 0.0003 33.8 3.1 16 182-197 28-43 (182)
380 3u4q_B ATP-dependent helicase/ 51.4 12 0.00041 44.1 4.9 31 396-426 344-375 (1166)
381 2bdt_A BH3686; alpha-beta prot 51.4 8.1 0.00028 34.4 2.8 17 181-197 3-19 (189)
382 3d8b_A Fidgetin-like protein 1 51.3 7.5 0.00026 38.9 2.9 19 179-197 116-134 (357)
383 4fcw_A Chaperone protein CLPB; 51.3 8.9 0.0003 37.1 3.3 17 181-197 48-64 (311)
384 1tev_A UMP-CMP kinase; ploop, 51.2 5.7 0.00019 35.3 1.7 18 180-197 3-20 (196)
385 3u06_A Protein claret segregat 51.0 9 0.00031 39.2 3.3 25 172-196 129-155 (412)
386 1via_A Shikimate kinase; struc 50.6 9.3 0.00032 33.5 3.1 17 182-198 6-22 (175)
387 1ak2_A Adenylate kinase isoenz 50.6 8.4 0.00029 35.8 2.9 20 179-198 15-34 (233)
388 2va8_A SSO2462, SKI2-type heli 50.4 40 0.0014 37.1 8.8 83 218-306 251-363 (715)
389 1tq1_A AT5G66040, senescence-a 50.3 12 0.00043 31.0 3.7 37 393-429 81-118 (129)
390 1f9v_A Kinesin-like protein KA 50.3 9.3 0.00032 38.1 3.3 25 173-197 76-102 (347)
391 2wbe_C Bipolar kinesin KRP-130 50.1 9.5 0.00033 38.5 3.3 24 173-196 92-117 (373)
392 3qf7_A RAD50; ABC-ATPase, ATPa 50.1 9.9 0.00034 38.2 3.5 17 182-198 25-41 (365)
393 3vfd_A Spastin; ATPase, microt 50.0 8 0.00027 39.2 2.8 19 179-197 147-165 (389)
394 2iyv_A Shikimate kinase, SK; t 49.7 8.2 0.00028 34.1 2.6 17 181-197 3-19 (184)
395 2r62_A Cell division protease 49.7 4.8 0.00016 38.3 1.0 18 180-197 44-61 (268)
396 1ye8_A Protein THEP1, hypothet 49.6 9.1 0.00031 34.1 2.8 16 182-197 2-17 (178)
397 1c9k_A COBU, adenosylcobinamid 49.6 10 0.00035 33.9 3.1 44 183-241 2-45 (180)
398 2yvu_A Probable adenylyl-sulfa 49.4 16 0.00054 32.3 4.5 20 179-198 12-31 (186)
399 3lnc_A Guanylate kinase, GMP k 49.3 6.9 0.00024 36.3 2.0 19 179-197 26-44 (231)
400 2v54_A DTMP kinase, thymidylat 49.2 7.8 0.00027 34.8 2.4 19 179-197 3-21 (204)
401 3f9v_A Minichromosome maintena 49.2 8.2 0.00028 41.7 2.9 15 182-196 329-343 (595)
402 1in4_A RUVB, holliday junction 49.2 9.1 0.00031 37.9 3.0 17 181-197 52-68 (334)
403 2heh_A KIF2C protein; kinesin, 49.2 10 0.00035 38.4 3.4 25 173-197 126-152 (387)
404 3b9q_A Chloroplast SRP recepto 49.2 15 0.00051 35.8 4.5 19 179-197 99-117 (302)
405 1zuh_A Shikimate kinase; alpha 49.1 9.2 0.00031 33.2 2.8 19 181-199 8-26 (168)
406 1iy2_A ATP-dependent metallopr 49.0 8.7 0.0003 36.8 2.8 54 141-197 35-90 (278)
407 1m7g_A Adenylylsulfate kinase; 48.7 8.5 0.00029 35.1 2.6 30 167-197 13-42 (211)
408 2f1r_A Molybdopterin-guanine d 48.6 7.4 0.00025 34.5 2.0 16 182-197 4-19 (171)
409 3hix_A ALR3790 protein; rhodan 48.6 9.6 0.00033 30.5 2.6 37 393-429 51-88 (106)
410 1gvn_B Zeta; postsegregational 48.6 6.5 0.00022 38.1 1.8 17 181-197 34-50 (287)
411 2bwj_A Adenylate kinase 5; pho 48.4 8.8 0.0003 34.3 2.6 19 179-197 11-29 (199)
412 3bfn_A Kinesin-like protein KI 48.4 8.9 0.00031 38.9 2.8 22 175-196 92-115 (388)
413 2r2a_A Uncharacterized protein 48.4 11 0.00037 34.3 3.2 16 183-198 8-23 (199)
414 1zd8_A GTP:AMP phosphotransfer 48.1 8.2 0.00028 35.6 2.4 18 180-197 7-24 (227)
415 1nks_A Adenylate kinase; therm 48.0 8 0.00027 34.3 2.2 16 182-197 3-18 (194)
416 3nhv_A BH2092 protein; alpha-b 47.9 12 0.0004 32.0 3.1 36 394-429 72-109 (144)
417 2k0z_A Uncharacterized protein 47.9 17 0.00059 29.1 4.1 38 392-429 54-91 (110)
418 1gmx_A GLPE protein; transfera 47.9 12 0.00041 29.9 3.1 37 393-429 57-94 (108)
419 3auy_A DNA double-strand break 47.9 7.6 0.00026 39.1 2.2 16 182-197 27-42 (371)
420 2iut_A DNA translocase FTSK; n 47.8 19 0.00065 38.4 5.3 24 180-203 214-237 (574)
421 2pez_A Bifunctional 3'-phospho 47.7 7.2 0.00025 34.4 1.8 19 179-197 4-22 (179)
422 1zak_A Adenylate kinase; ATP:A 47.6 12 0.0004 34.3 3.4 19 180-198 5-23 (222)
423 4gl2_A Interferon-induced heli 47.6 9.8 0.00034 41.8 3.3 77 219-305 400-488 (699)
424 3fb4_A Adenylate kinase; psych 47.3 8 0.00027 35.2 2.1 17 182-198 2-18 (216)
425 2z0m_A 337AA long hypothetical 47.2 30 0.001 33.4 6.6 69 394-467 56-134 (337)
426 1cke_A CK, MSSA, protein (cyti 47.2 10 0.00034 34.8 2.8 18 181-198 6-23 (227)
427 3c8u_A Fructokinase; YP_612366 47.0 8.3 0.00029 35.1 2.2 18 179-196 21-38 (208)
428 4a74_A DNA repair and recombin 46.9 9.5 0.00032 34.9 2.6 19 179-197 24-42 (231)
429 2if2_A Dephospho-COA kinase; a 46.8 8.6 0.00029 34.7 2.2 16 182-197 3-18 (204)
430 1e6c_A Shikimate kinase; phosp 46.7 9.1 0.00031 33.3 2.3 17 181-197 3-19 (173)
431 3dmq_A RNA polymerase-associat 46.7 32 0.0011 39.5 7.4 77 218-309 502-584 (968)
432 2rep_A Kinesin-like protein KI 46.4 11 0.00037 38.1 3.0 24 173-196 107-132 (376)
433 1aky_A Adenylate kinase; ATP:A 46.3 11 0.00039 34.4 3.1 18 180-197 4-21 (220)
434 3tif_A Uncharacterized ABC tra 46.1 9.1 0.00031 35.8 2.3 18 179-196 30-47 (235)
435 3asz_A Uridine kinase; cytidin 46.1 10 0.00035 34.4 2.6 18 180-197 6-23 (211)
436 2plr_A DTMP kinase, probable t 46.0 7.5 0.00026 35.1 1.7 19 179-197 3-21 (213)
437 2owm_A Nckin3-434, related to 46.0 13 0.00045 38.4 3.7 25 173-197 128-154 (443)
438 2i3b_A HCR-ntpase, human cance 45.9 12 0.00042 33.6 3.1 42 297-341 103-146 (189)
439 3k1j_A LON protease, ATP-depen 45.9 16 0.00055 39.5 4.6 23 175-197 55-77 (604)
440 3mwy_W Chromo domain-containin 45.8 81 0.0028 35.2 10.5 76 218-309 571-653 (800)
441 3dl0_A Adenylate kinase; phosp 45.8 8.7 0.0003 35.0 2.1 16 182-197 2-17 (216)
442 2v9p_A Replication protein E1; 45.7 11 0.00039 36.8 3.0 18 179-196 125-142 (305)
443 1jjv_A Dephospho-COA kinase; P 45.7 8.8 0.0003 34.7 2.1 15 183-197 5-19 (206)
444 2zan_A Vacuolar protein sortin 45.5 10 0.00036 39.2 2.9 53 141-197 129-184 (444)
445 1qf9_A UMP/CMP kinase, protein 45.2 12 0.00041 33.1 2.9 16 182-197 8-23 (194)
446 2cdn_A Adenylate kinase; phosp 45.0 9.9 0.00034 34.2 2.4 18 180-197 20-37 (201)
447 3h1t_A Type I site-specific re 45.0 42 0.0014 35.8 7.8 84 218-309 438-527 (590)
448 1tf5_A Preprotein translocase 45.0 26 0.00089 39.2 6.0 69 393-467 123-208 (844)
449 3qks_A DNA double-strand break 45.0 14 0.00047 33.6 3.3 24 182-207 25-48 (203)
450 2qt1_A Nicotinamide riboside k 44.8 6.8 0.00023 35.5 1.2 19 179-197 20-38 (207)
451 1np6_A Molybdopterin-guanine d 44.5 24 0.00083 31.2 4.8 15 182-196 8-22 (174)
452 1zu4_A FTSY; GTPase, signal re 44.5 19 0.00064 35.5 4.4 19 179-197 104-122 (320)
453 4e22_A Cytidylate kinase; P-lo 44.2 12 0.00042 35.2 3.0 19 179-197 26-44 (252)
454 1ry6_A Internal kinesin; kines 44.1 14 0.00047 37.1 3.4 18 179-196 82-101 (360)
455 2wwf_A Thymidilate kinase, put 44.1 11 0.00036 34.2 2.4 19 179-197 9-27 (212)
456 3pxg_A Negative regulator of g 43.9 15 0.00051 38.3 3.8 20 179-198 200-219 (468)
457 2ykg_A Probable ATP-dependent 43.8 22 0.00076 38.9 5.4 69 395-467 62-141 (696)
458 1ukz_A Uridylate kinase; trans 43.8 9.9 0.00034 34.2 2.1 16 182-197 17-32 (203)
459 2fsf_A Preprotein translocase 43.8 24 0.00082 39.4 5.5 69 393-467 114-199 (853)
460 3fho_A ATP-dependent RNA helic 43.6 3.4 0.00012 43.8 -1.3 72 219-306 357-432 (508)
461 2l82_A Designed protein OR32; 43.6 94 0.0032 24.7 7.4 48 401-448 86-133 (162)
462 3ice_A Transcription terminati 43.5 53 0.0018 33.3 7.5 90 106-198 73-192 (422)
463 1nn5_A Similar to deoxythymidy 43.4 11 0.00038 34.0 2.5 20 179-198 8-27 (215)
464 2og2_A Putative signal recogni 43.0 20 0.0007 35.8 4.5 19 179-197 156-174 (359)
465 1q57_A DNA primase/helicase; d 42.9 14 0.00049 38.8 3.5 50 179-239 241-290 (503)
466 2pt5_A Shikimate kinase, SK; a 42.8 10 0.00036 32.7 2.1 16 182-197 2-17 (168)
467 2vli_A Antibiotic resistance p 42.8 9.1 0.00031 33.7 1.7 18 180-197 5-22 (183)
468 2jaq_A Deoxyguanosine kinase; 42.1 13 0.00046 33.1 2.8 16 182-197 2-17 (205)
469 2fz4_A DNA repair protein RAD2 42.0 34 0.0012 31.7 5.7 46 394-452 133-179 (237)
470 1uf9_A TT1252 protein; P-loop, 42.0 14 0.00048 33.0 2.9 16 182-197 10-25 (203)
471 1sxj_A Activator 1 95 kDa subu 41.7 20 0.00068 37.8 4.4 17 181-197 78-94 (516)
472 2cbz_A Multidrug resistance-as 41.7 12 0.0004 35.1 2.3 18 179-196 30-47 (237)
473 3be4_A Adenylate kinase; malar 41.6 15 0.00052 33.5 3.1 18 180-197 5-22 (217)
474 1sgw_A Putative ABC transporte 41.6 13 0.00045 34.2 2.6 18 179-196 34-51 (214)
475 3h75_A Periplasmic sugar-bindi 41.5 2.5E+02 0.0084 27.0 15.0 38 383-420 193-230 (350)
476 3b6e_A Interferon-induced heli 41.4 12 0.0004 33.8 2.3 55 394-452 82-140 (216)
477 2ce7_A Cell division protein F 41.3 10 0.00035 39.6 2.1 17 181-197 50-66 (476)
478 1nij_A Hypothetical protein YJ 41.3 20 0.00067 35.2 4.0 14 183-196 7-20 (318)
479 2zj8_A DNA helicase, putative 41.1 57 0.0019 35.9 8.2 83 219-308 237-346 (720)
480 2pbr_A DTMP kinase, thymidylat 41.0 11 0.00039 33.2 2.1 15 183-197 3-17 (195)
481 3nh6_A ATP-binding cassette SU 41.0 12 0.00043 36.5 2.5 18 179-196 79-96 (306)
482 3a4m_A L-seryl-tRNA(SEC) kinas 41.0 11 0.00039 35.6 2.1 17 181-197 5-21 (260)
483 2bbw_A Adenylate kinase 4, AK4 40.9 14 0.00049 34.5 2.8 18 180-197 27-44 (246)
484 1z63_A Helicase of the SNF2/RA 40.9 61 0.0021 33.6 8.1 77 218-309 340-422 (500)
485 2p5t_B PEZT; postsegregational 40.7 8.1 0.00028 36.5 1.0 18 180-197 32-49 (253)
486 3sr0_A Adenylate kinase; phosp 40.7 15 0.00051 33.6 2.8 17 182-198 2-18 (206)
487 2hhg_A Hypothetical protein RP 40.7 13 0.00046 31.1 2.4 37 393-429 85-122 (139)
488 2v3c_C SRP54, signal recogniti 40.6 22 0.00074 36.6 4.3 19 181-199 100-118 (432)
489 4a2w_A RIG-I, retinoic acid in 40.5 21 0.00071 40.9 4.6 70 394-467 296-376 (936)
490 1e4v_A Adenylate kinase; trans 39.8 16 0.00055 33.2 2.9 16 182-197 2-17 (214)
491 1vee_A Proline-rich protein fa 39.7 22 0.00074 29.7 3.5 37 393-429 73-110 (134)
492 2pcj_A ABC transporter, lipopr 39.5 14 0.00047 34.3 2.4 18 179-196 29-46 (224)
493 2p6r_A Afuhel308 helicase; pro 39.4 53 0.0018 35.9 7.6 82 218-305 241-346 (702)
494 2pze_A Cystic fibrosis transme 39.2 13 0.00046 34.4 2.3 18 179-196 33-50 (229)
495 3nzo_A UDP-N-acetylglucosamine 39.2 2.3E+02 0.008 28.2 12.0 90 171-282 26-119 (399)
496 3gfo_A Cobalt import ATP-bindi 39.2 13 0.00045 35.7 2.3 18 179-196 33-50 (275)
497 4fn4_A Short chain dehydrogena 39.0 1.4E+02 0.0047 28.0 9.5 81 178-284 5-93 (254)
498 2z0h_A DTMP kinase, thymidylat 38.8 13 0.00045 33.0 2.1 15 183-197 3-17 (197)
499 3bs4_A Uncharacterized protein 38.6 54 0.0018 31.1 6.5 52 179-242 20-71 (260)
500 3cmw_A Protein RECA, recombina 38.6 33 0.0011 41.7 5.9 39 179-228 33-71 (1706)
No 1
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=100.00 E-value=1.6e-69 Score=578.88 Aligned_cols=391 Identities=39% Similarity=0.652 Sum_probs=363.6
Q ss_pred cCeEeecCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCCEEEEecCCchHhHHHHHHHHHHHHhh
Q 007814 129 WHIIVDGEDIPPPIKNFKDMRFPEPILKKLKAKGIVQPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPMIMIAMHE 208 (588)
Q Consensus 129 ~~i~v~g~~~p~p~~~f~~~~l~~~l~~~l~~~g~~~p~~~Q~~~i~~il~g~dvii~a~TGsGKTl~~~lp~l~~~~~~ 208 (588)
..+.+.|.++|.|+.+|+++++++.++++|.+.||.+|||+|.++||.+++|+|++++||||||||++|++|++..++..
T Consensus 42 ~~~~~~~~~~p~~~~~f~~~~l~~~l~~~l~~~g~~~pt~iQ~~ai~~i~~g~d~i~~a~TGsGKT~a~~lpil~~l~~~ 121 (434)
T 2db3_A 42 IPVKVTGSDVPQPIQHFTSADLRDIIIDNVNKSGYKIPTPIQKCSIPVISSGRDLMACAQTGSGKTAAFLLPILSKLLED 121 (434)
T ss_dssp SCEEEESSSCCCCCCCGGGSCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHHS
T ss_pred ceeEecCCCCCCCcCChhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCEEEECCCCCCchHHHHHHHHHHHHhc
Confidence 45788999999999999999999999999999999999999999999999999999999999999999999999988764
Q ss_pred cccCCCCCCCCCEEEEEcCCHHHHHHHHHHHHHHhhcccccCCCCceEEEEEcCcchHHHHHHHhcCCcEEEeChHHHHH
Q 007814 209 EMMMPIVPGEGPFCLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKD 288 (588)
Q Consensus 209 ~~~~~~~~~~~~~~Lil~Ptr~La~Q~~~~~~~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~L~~ 288 (588)
.. .....++++|||+|||+||.|+++.+.+++... ++++.+++||.....+...+..+++|+|+||++|.+
T Consensus 122 ~~---~~~~~~~~~lil~PtreLa~Q~~~~~~~~~~~~------~~~~~~~~gg~~~~~~~~~l~~~~~Ivv~Tp~~l~~ 192 (434)
T 2db3_A 122 PH---ELELGRPQVVIVSPTRELAIQIFNEARKFAFES------YLKIGIVYGGTSFRHQNECITRGCHVVIATPGRLLD 192 (434)
T ss_dssp CC---CCCTTCCSEEEECSSHHHHHHHHHHHHHHTTTS------SCCCCEECTTSCHHHHHHHHTTCCSEEEECHHHHHH
T ss_pred cc---ccccCCccEEEEecCHHHHHHHHHHHHHHhccC------CcEEEEEECCCCHHHHHHHhhcCCCEEEEChHHHHH
Confidence 21 112357899999999999999999999997644 788899999999998888888999999999999999
Q ss_pred HHHcccCCCCCcceeEecCcccccccCcHHHHHHHHHhh--hhcceeEEEecccchHHHHHHHHhcCCCeEEEecCCCCc
Q 007814 289 MLAKKKMNLDNCRYLTLDEADRLVDLGFEDDIREVFDHF--KAQRQTLLFSATMPTKIQNFARSALVKPVTVNVGRAGAA 366 (588)
Q Consensus 289 ~l~~~~~~l~~~~~lViDEah~l~~~~~~~~i~~i~~~~--~~~~q~l~~SAT~~~~i~~~~~~~l~~p~~i~~~~~~~~ 366 (588)
++.+....++++++||+||||+|+++||...++.++..+ +..+|+++||||+|+.+..++..++.++..+.++..+..
T Consensus 193 ~l~~~~~~l~~~~~lVlDEah~~~~~gf~~~~~~i~~~~~~~~~~q~l~~SAT~~~~~~~~~~~~l~~~~~i~~~~~~~~ 272 (434)
T 2db3_A 193 FVDRTFITFEDTRFVVLDEADRMLDMGFSEDMRRIMTHVTMRPEHQTLMFSATFPEEIQRMAGEFLKNYVFVAIGIVGGA 272 (434)
T ss_dssp HHHTTSCCCTTCCEEEEETHHHHTSTTTHHHHHHHHHCTTSCSSCEEEEEESCCCHHHHHHHHTTCSSCEEEEESSTTCC
T ss_pred HHHhCCcccccCCeEEEccHhhhhccCcHHHHHHHHHhcCCCCCceEEEEeccCCHHHHHHHHHhccCCEEEEecccccc
Confidence 999888889999999999999999999999999999885 578899999999999999999999999999998888777
Q ss_pred ccceEEEeeehhhHHHHHHHHHHhhcCCCCEEEEeCccccHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhcCCcE
Q 007814 367 NLDVIQEVEYVKQEAKIVYLLECLQKTPPPVLIFCENKADVDDIHEYLLLKGVEAVAVHGGKDQEEREYAISSFKAGKKD 446 (588)
Q Consensus 367 ~~~~~~~~~~~~~~~k~~~ll~~l~~~~~~viIF~~s~~~~~~l~~~L~~~g~~~~~ihg~~~~~~R~~~~~~f~~g~~~ 446 (588)
..++.+.+..+....+...+++.+.....++||||+++..++.+++.|...|+.+..+||++++.+|..+++.|++|+.+
T Consensus 273 ~~~i~~~~~~~~~~~k~~~l~~~l~~~~~~~lVF~~t~~~a~~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~~F~~g~~~ 352 (434)
T 2db3_A 273 CSDVKQTIYEVNKYAKRSKLIEILSEQADGTIVFVETKRGADFLASFLSEKEFPTTSIHGDRLQSQREQALRDFKNGSMK 352 (434)
T ss_dssp CTTEEEEEEECCGGGHHHHHHHHHHHCCTTEEEECSSHHHHHHHHHHHHHTTCCEEEESTTSCHHHHHHHHHHHHTSSCS
T ss_pred ccccceEEEEeCcHHHHHHHHHHHHhCCCCEEEEEeCcHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHHHcCCCc
Confidence 88888888888888888889998888777899999999999999999999999999999999999999999999999999
Q ss_pred EEEEcCccccCCCCCCcceEEecCCCCChhHHHHHhcccccCCCccEEEEEecCCCChhHHHHHHHHHHHhcccCchHHh
Q 007814 447 VLVATDVASKGLDFPDIQHVINYDMPAEIENYVHRIGRTGRCGKTGIATTFINKNQSETTLLDLKHLLQEAKQRIPPVLA 526 (588)
Q Consensus 447 vLVaT~~~~~GlDip~v~~VI~~~~p~s~~~y~qriGRagR~g~~g~~~~~~~~~~~~~~~~~l~~~l~~~~~~~p~~l~ 526 (588)
|||||+++++|+|+|++++||+||+|.++++|+||+|||||.|+.|.+++|+++..+...+.++.+++..+++.+|++|.
T Consensus 353 vLvaT~v~~rGlDi~~v~~VI~~d~p~~~~~y~qriGR~gR~g~~G~a~~~~~~~~~~~~~~~l~~~l~~~~~~vp~~l~ 432 (434)
T 2db3_A 353 VLIATSVASRGLDIKNIKHVINYDMPSKIDDYVHRIGRTGRVGNNGRATSFFDPEKDRAIAADLVKILEGSGQTVPDFLR 432 (434)
T ss_dssp EEEECGGGTSSCCCTTCCEEEESSCCSSHHHHHHHHTTSSCTTCCEEEEEEECTTTCGGGHHHHHHHHHHTTCCCCGGGC
T ss_pred EEEEchhhhCCCCcccCCEEEEECCCCCHHHHHHHhcccccCCCCCEEEEEEeccccHHHHHHHHHHHHHcCCCCCHHHH
Confidence 99999999999999999999999999999999999999999999999999999777888999999999999999999987
Q ss_pred hc
Q 007814 527 EL 528 (588)
Q Consensus 527 ~l 528 (588)
++
T Consensus 433 ~~ 434 (434)
T 2db3_A 433 TC 434 (434)
T ss_dssp --
T ss_pred hC
Confidence 54
No 2
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=100.00 E-value=3.6e-62 Score=519.61 Aligned_cols=394 Identities=39% Similarity=0.688 Sum_probs=351.1
Q ss_pred eEeecCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCCEEEEecCCchHhHHHHHHHHHHHHhhcc
Q 007814 131 IIVDGEDIPPPIKNFKDMRFPEPILKKLKAKGIVQPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPMIMIAMHEEM 210 (588)
Q Consensus 131 i~v~g~~~p~p~~~f~~~~l~~~l~~~l~~~g~~~p~~~Q~~~i~~il~g~dvii~a~TGsGKTl~~~lp~l~~~~~~~~ 210 (588)
+.+.|.++|+|+.+|+++++++.+.++|...||..|||+|.++|+.++.|+|++++||||||||++|++|++..+.....
T Consensus 3 ~~~~~~~~p~~~~~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKT~~~~~~~l~~~~~~~~ 82 (417)
T 2i4i_A 3 VEATGNNCPPHIESFSDVEMGEIIMGNIELTRYTRPTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPILSQIYSDGP 82 (417)
T ss_dssp EEEESTTCCCCCSSGGGSCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHHCC
T ss_pred cccCCCcCCcccCCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHccCCCEEEEcCCCCHHHHHHHHHHHHHHHhccc
Confidence 56789999999999999999999999999999999999999999999999999999999999999999999988765421
Q ss_pred c----------CCCCCCCCCEEEEEcCCHHHHHHHHHHHHHHhhcccccCCCCceEEEEEcCcchHHHHHHHhcCCcEEE
Q 007814 211 M----------MPIVPGEGPFCLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVV 280 (588)
Q Consensus 211 ~----------~~~~~~~~~~~Lil~Ptr~La~Q~~~~~~~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IvV 280 (588)
. .......++++|||+||++||.|+++.+.+++... ++++..++||.....+...+..+++|+|
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~------~~~~~~~~g~~~~~~~~~~~~~~~~I~v 156 (417)
T 2i4i_A 83 GEALRAMKENGRYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRS------RVRPCVVYGGADIGQQIRDLERGCHLLV 156 (417)
T ss_dssp CHHHHHHHHCBTTBSCSBCCSEEEECSSHHHHHHHHHHHHHHHTTS------SCCEEEECSSSCHHHHHHHHTTCCSEEE
T ss_pred cchhhccccccccccccCCccEEEECCcHHHHHHHHHHHHHHhCcC------CceEEEEECCCCHHHHHHHhhCCCCEEE
Confidence 0 00011235789999999999999999999987644 7899999999999888888888999999
Q ss_pred eChHHHHHHHHcccCCCCCcceeEecCcccccccCcHHHHHHHHHhh--hh--cceeEEEecccchHHHHHHHHhcCCCe
Q 007814 281 ATPGRLKDMLAKKKMNLDNCRYLTLDEADRLVDLGFEDDIREVFDHF--KA--QRQTLLFSATMPTKIQNFARSALVKPV 356 (588)
Q Consensus 281 ~Tp~~L~~~l~~~~~~l~~~~~lViDEah~l~~~~~~~~i~~i~~~~--~~--~~q~l~~SAT~~~~i~~~~~~~l~~p~ 356 (588)
+||++|.+++....+.+..+++||+||||++.+++|...+..++... +. .+|++++|||+++.+..++..++.++.
T Consensus 157 ~Tp~~l~~~l~~~~~~~~~~~~iViDEah~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~ 236 (417)
T 2i4i_A 157 ATPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQIRRIVEQDTMPPKGVRHTMMFSATFPKEIQMLARDFLDEYI 236 (417)
T ss_dssp ECHHHHHHHHHTTSBCCTTCCEEEESSHHHHHHTTCHHHHHHHHTSSSCCCBTTBEEEEEESCCCHHHHHHHHHHCSSCE
T ss_pred EChHHHHHHHHcCCcChhhCcEEEEEChhHhhccCcHHHHHHHHHhccCCCcCCcEEEEEEEeCCHHHHHHHHHHcCCCE
Confidence 99999999999888889999999999999999999999999998753 22 578999999999999999999999998
Q ss_pred EEEecCCCCcccceEEEeeehhhHHHHHHHHHHhhcC--CCCEEEEeCccccHHHHHHHHHHcCCcEEEEeCCCCHHHHH
Q 007814 357 TVNVGRAGAANLDVIQEVEYVKQEAKIVYLLECLQKT--PPPVLIFCENKADVDDIHEYLLLKGVEAVAVHGGKDQEERE 434 (588)
Q Consensus 357 ~i~~~~~~~~~~~~~~~~~~~~~~~k~~~ll~~l~~~--~~~viIF~~s~~~~~~l~~~L~~~g~~~~~ihg~~~~~~R~ 434 (588)
.+.+.........+.+.+.+.....+...+...+... +.++||||+++..++.+++.|...|+.+..+||++++.+|.
T Consensus 237 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~l~~~l~~~~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~ 316 (417)
T 2i4i_A 237 FLAVGRVGSTSENITQKVVWVEESDKRSFLLDLLNATGKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDRE 316 (417)
T ss_dssp EEEEC----CCSSEEEEEEECCGGGHHHHHHHHHHTCCTTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHH
T ss_pred EEEeCCCCCCccCceEEEEEeccHhHHHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHHCCCCeeEecCCCCHHHHH
Confidence 8888777667777888888887777887788877764 56899999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCcEEEEEcCccccCCCCCCcceEEecCCCCChhHHHHHhcccccCCCccEEEEEecCCCChhHHHHHHHHH
Q 007814 435 YAISSFKAGKKDVLVATDVASKGLDFPDIQHVINYDMPAEIENYVHRIGRTGRCGKTGIATTFINKNQSETTLLDLKHLL 514 (588)
Q Consensus 435 ~~~~~f~~g~~~vLVaT~~~~~GlDip~v~~VI~~~~p~s~~~y~qriGRagR~g~~g~~~~~~~~~~~~~~~~~l~~~l 514 (588)
.+++.|++|+.+|||||+++++|+|+|++++||+|++|.++..|+||+||+||.|+.|.+++|+++. +...+..+.+.+
T Consensus 317 ~~~~~f~~g~~~vlvaT~~~~~Gidip~v~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~-~~~~~~~l~~~~ 395 (417)
T 2i4i_A 317 EALHQFRSGKSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNER-NINITKDLLDLL 395 (417)
T ss_dssp HHHHHHHHTSSCEEEECHHHHTTSCCCCEEEEEESSCCSSHHHHHHHHTTBCC--CCEEEEEEECGG-GGGGHHHHHHHH
T ss_pred HHHHHHHcCCCCEEEECChhhcCCCcccCCEEEEEcCCCCHHHHHHhcCccccCCCCceEEEEEccc-cHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999987 677889999999
Q ss_pred HHhcccCchHHhhccCc
Q 007814 515 QEAKQRIPPVLAELNDP 531 (588)
Q Consensus 515 ~~~~~~~p~~l~~l~~~ 531 (588)
....+.+|.++..+...
T Consensus 396 ~~~~~~~~~~l~~~~~~ 412 (417)
T 2i4i_A 396 VEAKQEVPSWLENMAYE 412 (417)
T ss_dssp HHTTCCCCHHHHHHHTC
T ss_pred HHhcCcCCHHHHHHHHh
Confidence 99999999999888765
No 3
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=100.00 E-value=2.1e-59 Score=497.35 Aligned_cols=370 Identities=30% Similarity=0.522 Sum_probs=326.6
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCC
Q 007814 138 IPPPIKNFKDMRFPEPILKKLKAKGIVQPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPG 217 (588)
Q Consensus 138 ~p~p~~~f~~~~l~~~l~~~l~~~g~~~p~~~Q~~~i~~il~g~dvii~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~ 217 (588)
.+.+..+|+++++++.+++.|...||..|+|+|.++++.+++|+|+++++|||||||++|++|++..+.. ..
T Consensus 32 ~~~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~ai~~i~~~~~~lv~a~TGsGKT~~~~~~~~~~l~~--------~~ 103 (410)
T 2j0s_A 32 EVDVTPTFDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQCLDI--------QV 103 (410)
T ss_dssp TCCCCCSGGGGCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHTCCT--------TS
T ss_pred CccCCCCHhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEECCCCCCchHHHHHHHHHHHhh--------cc
Confidence 3456778999999999999999999999999999999999999999999999999999999999976532 12
Q ss_pred CCCEEEEEcCCHHHHHHHHHHHHHHhhcccccCCCCceEEEEEcCcchHHHHHHHhcCCcEEEeChHHHHHHHHcccCCC
Q 007814 218 EGPFCLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMNL 297 (588)
Q Consensus 218 ~~~~~Lil~Ptr~La~Q~~~~~~~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~L~~~l~~~~~~l 297 (588)
.++++|||+||++|+.|+++.+.+++... ++.+..++||.....+...+..+++|+|+||++|.+++.+....+
T Consensus 104 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~------~~~~~~~~g~~~~~~~~~~~~~~~~ivv~Tp~~l~~~l~~~~~~~ 177 (410)
T 2j0s_A 104 RETQALILAPTRELAVQIQKGLLALGDYM------NVQCHACIGGTNVGEDIRKLDYGQHVVAGTPGRVFDMIRRRSLRT 177 (410)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHTTTT------TCCEEEECTTSCHHHHHHHHHHCCSEEEECHHHHHHHHHTTSSCC
T ss_pred CCceEEEEcCcHHHHHHHHHHHHHHhccC------CeEEEEEECCCCHHHHHHHhhcCCCEEEcCHHHHHHHHHhCCccH
Confidence 56789999999999999999999997654 788999999999988888888899999999999999999888888
Q ss_pred CCcceeEecCcccccccCcHHHHHHHHHhhhhcceeEEEecccchHHHHHHHHhcCCCeEEEecCCCCcccceEEEeeeh
Q 007814 298 DNCRYLTLDEADRLVDLGFEDDIREVFDHFKAQRQTLLFSATMPTKIQNFARSALVKPVTVNVGRAGAANLDVIQEVEYV 377 (588)
Q Consensus 298 ~~~~~lViDEah~l~~~~~~~~i~~i~~~~~~~~q~l~~SAT~~~~i~~~~~~~l~~p~~i~~~~~~~~~~~~~~~~~~~ 377 (588)
..+++||+||||++.+++|...+..++..++...|++++|||+++.+..+...++.+|..+.+.........+.+.+...
T Consensus 178 ~~~~~vViDEah~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (410)
T 2j0s_A 178 RAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQVVLISATLPHEILEMTNKFMTDPIRILVKRDELTLEGIKQFFVAV 257 (410)
T ss_dssp TTCCEEEEETHHHHTSTTTHHHHHHHHTTSCTTCEEEEEESCCCHHHHTTGGGTCSSCEEECCCGGGCSCTTEEEEEEEE
T ss_pred hheeEEEEccHHHHHhhhhHHHHHHHHHhCccCceEEEEEcCCCHHHHHHHHHHcCCCEEEEecCccccCCCceEEEEEe
Confidence 99999999999999999999999999999999999999999999999999999999998887766655556666666555
Q ss_pred hhH-HHHHHHHHHhhc-CCCCEEEEeCccccHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhcCCcEEEEEcCccc
Q 007814 378 KQE-AKIVYLLECLQK-TPPPVLIFCENKADVDDIHEYLLLKGVEAVAVHGGKDQEEREYAISSFKAGKKDVLVATDVAS 455 (588)
Q Consensus 378 ~~~-~k~~~ll~~l~~-~~~~viIF~~s~~~~~~l~~~L~~~g~~~~~ihg~~~~~~R~~~~~~f~~g~~~vLVaT~~~~ 455 (588)
... .+...+...+.. ...++||||+++..++.+++.|...|+.+..+||++++.+|..+++.|++|+.+|||||++++
T Consensus 258 ~~~~~k~~~l~~~~~~~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~ 337 (410)
T 2j0s_A 258 EREEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDVWA 337 (410)
T ss_dssp SSTTHHHHHHHHHHHHHTSSEEEEECSSHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHHTSSCEEEECGGGS
T ss_pred CcHHhHHHHHHHHHHhcCCCcEEEEEcCHHHHHHHHHHHHhCCCceEEeeCCCCHHHHHHHHHHHHCCCCCEEEECChhh
Confidence 433 355556655544 456899999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCcceEEecCCCCChhHHHHHhcccccCCCccEEEEEecCCCChhHHHHHHHHHHHhcccCc
Q 007814 456 KGLDFPDIQHVINYDMPAEIENYVHRIGRTGRCGKTGIATTFINKNQSETTLLDLKHLLQEAKQRIP 522 (588)
Q Consensus 456 ~GlDip~v~~VI~~~~p~s~~~y~qriGRagR~g~~g~~~~~~~~~~~~~~~~~l~~~l~~~~~~~p 522 (588)
+|+|+|++++||+||+|+++..|+||+||+||.|+.|.+++|+++. +...+.++.+++......+|
T Consensus 338 ~Gidi~~v~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~-~~~~~~~i~~~~~~~~~~~~ 403 (410)
T 2j0s_A 338 RGLDVPQVSLIINYDLPNNRELYIHRIGRSGRYGRKGVAINFVKND-DIRILRDIEQYYSTQIDEMP 403 (410)
T ss_dssp SSCCCTTEEEEEESSCCSSHHHHHHHHTTSSGGGCCEEEEEEEEGG-GHHHHHHHHHHTTCCCEECC
T ss_pred CcCCcccCCEEEEECCCCCHHHHHHhcccccCCCCceEEEEEecHH-HHHHHHHHHHHhCCCceecc
Confidence 9999999999999999999999999999999999999999999987 55566666665554444444
No 4
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=100.00 E-value=1.1e-57 Score=484.26 Aligned_cols=376 Identities=30% Similarity=0.544 Sum_probs=316.2
Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCC
Q 007814 137 DIPPPIKNFKDMRFPEPILKKLKAKGIVQPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVP 216 (588)
Q Consensus 137 ~~p~p~~~f~~~~l~~~l~~~l~~~g~~~p~~~Q~~~i~~il~g~dvii~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~ 216 (588)
..+....+|+++++++.+.+.|.+.||..|+++|.++|+.+++|+|+++++|||||||++|++|++..+...
T Consensus 34 ~~~~~~~~f~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~~~~~-------- 105 (414)
T 3eiq_A 34 NWNEIVDSFDDMNLSESLLRGIYAYGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAISILQQIELD-------- 105 (414)
T ss_dssp CCCCCCCCGGGGCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEECCCSCSSSHHHHHHHHHHHCCTT--------
T ss_pred CccchhcCHhhCCCCHHHHHHHHHcCCCCCCHHHHHHhHHHhCCCCEEEECCCCCcccHHHHHHHHHHHhhc--------
Confidence 345567899999999999999999999999999999999999999999999999999999999999875431
Q ss_pred CCCCEEEEEcCCHHHHHHHHHHHHHHhhcccccCCCCceEEEEEcCcchHHHHHHHh-cCCcEEEeChHHHHHHHHcccC
Q 007814 217 GEGPFCLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVK-RGVHIVVATPGRLKDMLAKKKM 295 (588)
Q Consensus 217 ~~~~~~Lil~Ptr~La~Q~~~~~~~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~-~~~~IvV~Tp~~L~~~l~~~~~ 295 (588)
..++++||++||++|+.|+++.+.+++... ++.+..++|+.....+...+. .+++|+|+||++|.+++....+
T Consensus 106 ~~~~~~lil~P~~~L~~q~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~l~~~~~ 179 (414)
T 3eiq_A 106 LKATQALVLAPTRELAQQIQKVVMALGDYM------GASCHACIGGTNVRAEVQKLQMEAPHIIVGTPGRVFDMLNRRYL 179 (414)
T ss_dssp SCSCCEEEECSSHHHHHHHHHHHHHHGGGS------CCCEEECCCCTTHHHHHHHHTTTCCSEEEECHHHHHHHHHHTSS
T ss_pred CCceeEEEEeChHHHHHHHHHHHHHHhccc------CceEEEEECCcchHHHHHHHhcCCCCEEEECHHHHHHHHHcCCc
Confidence 256789999999999999999999997654 788889999988887777765 6789999999999999998888
Q ss_pred CCCCcceeEecCcccccccCcHHHHHHHHHhhhhcceeEEEecccchHHHHHHHHhcCCCeEEEecCCCCcccceEEEee
Q 007814 296 NLDNCRYLTLDEADRLVDLGFEDDIREVFDHFKAQRQTLLFSATMPTKIQNFARSALVKPVTVNVGRAGAANLDVIQEVE 375 (588)
Q Consensus 296 ~l~~~~~lViDEah~l~~~~~~~~i~~i~~~~~~~~q~l~~SAT~~~~i~~~~~~~l~~p~~i~~~~~~~~~~~~~~~~~ 375 (588)
.+..+++||+||||++.+++|...+..++..++...|+++||||+++.+..+...++.++..+...........+.+.+.
T Consensus 180 ~~~~~~~vViDEah~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (414)
T 3eiq_A 180 SPKYIKMFVLDEADEMLSRGFKDQIYDIFQKLNSNTQVVLLSATMPSDVLEVTKKFMRDPIRILVKKEELTLEGIRQFYI 259 (414)
T ss_dssp CSTTCCEEEECSHHHHHHTTTHHHHHHHHTTSCTTCEEEEECSCCCHHHHHHHTTTCSSCEEECCCCCCCCTTSCCEEEE
T ss_pred ccccCcEEEEECHHHhhccCcHHHHHHHHHhCCCCCeEEEEEEecCHHHHHHHHHHcCCCEEEEecCCccCCCCceEEEE
Confidence 88999999999999999999999999999999999999999999999999999999999988877666555555555555
Q ss_pred ehh-hHHHHHHHHHHhhc-CCCCEEEEeCccccHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhcCCcEEEEEcCc
Q 007814 376 YVK-QEAKIVYLLECLQK-TPPPVLIFCENKADVDDIHEYLLLKGVEAVAVHGGKDQEEREYAISSFKAGKKDVLVATDV 453 (588)
Q Consensus 376 ~~~-~~~k~~~ll~~l~~-~~~~viIF~~s~~~~~~l~~~L~~~g~~~~~ihg~~~~~~R~~~~~~f~~g~~~vLVaT~~ 453 (588)
... .+.+...+...+.. ..+++||||+++..++.+++.|...++.+..+||++++.+|..+++.|++|+.+|||||++
T Consensus 260 ~~~~~~~~~~~l~~~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~~ 339 (414)
T 3eiq_A 260 NVEREEWKLDTLCDLYETLTITQAVIFINTRRKVDWLTEKMHARDFTVSAMHGDMDQKERDVIMREFRSGSSRVLITTDL 339 (414)
T ss_dssp ECSSSTTHHHHHHHHHHSSCCSSCEEECSCHHHHHHHHHHHHTTTCCCEEC---CHHHHHHHHHHHHSCC---CEEECSS
T ss_pred EeChHHhHHHHHHHHHHhCCCCcEEEEeCCHHHHHHHHHHHHhcCCeEEEecCCCCHHHHHHHHHHHHcCCCcEEEECCc
Confidence 443 33466666666655 3568999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCCCcceEEecCCCCChhHHHHHhcccccCCCccEEEEEecCCCChhHHHHHHHHHHHhcccCchHHhh
Q 007814 454 ASKGLDFPDIQHVINYDMPAEIENYVHRIGRTGRCGKTGIATTFINKNQSETTLLDLKHLLQEAKQRIPPVLAE 527 (588)
Q Consensus 454 ~~~GlDip~v~~VI~~~~p~s~~~y~qriGRagR~g~~g~~~~~~~~~~~~~~~~~l~~~l~~~~~~~p~~l~~ 527 (588)
+++|+|+|++++||+|++|.++..|+||+||+||.|+.|.+++|+++. +...+..+..++......+|..+.+
T Consensus 340 ~~~Gidip~v~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 412 (414)
T 3eiq_A 340 LARGIDVQQVSLVINYDLPTNRENYIHRIGRGGRFGRKGVAINMVTEE-DKRTLRDIETFYNTSIEEMPLNVAD 412 (414)
T ss_dssp CC--CCGGGCSCEEESSCCSSTHHHHHHSCCC-------CEEEEECST-HHHHHHHHHHHTTCCCEECCC----
T ss_pred cccCCCccCCCEEEEeCCCCCHHHhhhhcCcccCCCCCceEEEEEcHH-HHHHHHHHHHHHcCCccccChhhhh
Confidence 999999999999999999999999999999999999999999999988 6667777777777766777766554
No 5
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=100.00 E-value=1.4e-56 Score=474.04 Aligned_cols=368 Identities=30% Similarity=0.534 Sum_probs=317.6
Q ss_pred CCCCCCCCCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCC
Q 007814 140 PPIKNFKDMRFPEPILKKLKAKGIVQPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEG 219 (588)
Q Consensus 140 ~p~~~f~~~~l~~~l~~~l~~~g~~~p~~~Q~~~i~~il~g~dvii~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~ 219 (588)
.+..+|+++++++.+.+.|.+.||..|+|+|.++++.+++|+++++++|||||||++|++|++..+... ..+
T Consensus 18 ~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~li~a~TGsGKT~~~~~~~~~~~~~~--------~~~ 89 (400)
T 1s2m_A 18 TKGNTFEDFYLKRELLMGIFEAGFEKPSPIQEEAIPVAITGRDILARAKNGTGKTAAFVIPTLEKVKPK--------LNK 89 (400)
T ss_dssp ---CCGGGGCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHHTCCEEEECCTTSCHHHHHHHHHHHHCCTT--------SCS
T ss_pred cccCChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCEEEECCCCcHHHHHHHHHHHHHHhhc--------cCC
Confidence 456789999999999999999999999999999999999999999999999999999999999765331 246
Q ss_pred CEEEEEcCCHHHHHHHHHHHHHHhhcccccCCCCceEEEEEcCcchHHHHHHHhcCCcEEEeChHHHHHHHHcccCCCCC
Q 007814 220 PFCLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMNLDN 299 (588)
Q Consensus 220 ~~~Lil~Ptr~La~Q~~~~~~~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~L~~~l~~~~~~l~~ 299 (588)
+++||++||++|+.|+++.+.+++... ++++..++|+.....+...+..+++|+|+||++|.+++......+.+
T Consensus 90 ~~~lil~P~~~L~~q~~~~~~~~~~~~------~~~~~~~~g~~~~~~~~~~~~~~~~Ivv~T~~~l~~~~~~~~~~~~~ 163 (400)
T 1s2m_A 90 IQALIMVPTRELALQTSQVVRTLGKHC------GISCMVTTGGTNLRDDILRLNETVHILVGTPGRVLDLASRKVADLSD 163 (400)
T ss_dssp CCEEEECSSHHHHHHHHHHHHHHTTTT------TCCEEEECSSSCHHHHHHHTTSCCSEEEECHHHHHHHHHTTCSCCTT
T ss_pred ccEEEEcCCHHHHHHHHHHHHHHhccc------CceEEEEeCCcchHHHHHHhcCCCCEEEEchHHHHHHHHhCCccccc
Confidence 689999999999999999999997654 78899999998888777777788999999999999999888788899
Q ss_pred cceeEecCcccccccCcHHHHHHHHHhhhhcceeEEEecccchHHHHHHHHhcCCCeEEEecCCCCcccceEEEeeehhh
Q 007814 300 CRYLTLDEADRLVDLGFEDDIREVFDHFKAQRQTLLFSATMPTKIQNFARSALVKPVTVNVGRAGAANLDVIQEVEYVKQ 379 (588)
Q Consensus 300 ~~~lViDEah~l~~~~~~~~i~~i~~~~~~~~q~l~~SAT~~~~i~~~~~~~l~~p~~i~~~~~~~~~~~~~~~~~~~~~ 379 (588)
+++||+||||++.+.+|...+..++..++...|++++|||++..+..++...+..|..+..... .....+.+.+.....
T Consensus 164 ~~~vIiDEaH~~~~~~~~~~~~~i~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 242 (400)
T 1s2m_A 164 CSLFIMDEADKMLSRDFKTIIEQILSFLPPTHQSLLFSATFPLTVKEFMVKHLHKPYEINLMEE-LTLKGITQYYAFVEE 242 (400)
T ss_dssp CCEEEEESHHHHSSHHHHHHHHHHHTTSCSSCEEEEEESCCCHHHHHHHHHHCSSCEEESCCSS-CBCTTEEEEEEECCG
T ss_pred CCEEEEeCchHhhhhchHHHHHHHHHhCCcCceEEEEEecCCHHHHHHHHHHcCCCeEEEeccc-cccCCceeEEEEech
Confidence 9999999999999988888899999988889999999999999999999999988877654432 333455666666666
Q ss_pred HHHHHHHHHHhhc-CCCCEEEEeCccccHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhcCCcEEEEEcCccccCC
Q 007814 380 EAKIVYLLECLQK-TPPPVLIFCENKADVDDIHEYLLLKGVEAVAVHGGKDQEEREYAISSFKAGKKDVLVATDVASKGL 458 (588)
Q Consensus 380 ~~k~~~ll~~l~~-~~~~viIF~~s~~~~~~l~~~L~~~g~~~~~ihg~~~~~~R~~~~~~f~~g~~~vLVaT~~~~~Gl 458 (588)
..+...+...+.. ..+++||||+++..++.+++.|...|+.+..+||++++.+|..+++.|++|+.+|||||+++++|+
T Consensus 243 ~~k~~~l~~~~~~~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gi 322 (400)
T 1s2m_A 243 RQKLHCLNTLFSKLQINQAIIFCNSTNRVELLAKKITDLGYSCYYSHARMKQQERNKVFHEFRQGKVRTLVCSDLLTRGI 322 (400)
T ss_dssp GGHHHHHHHHHHHSCCSEEEEECSSHHHHHHHHHHHHHHTCCEEEECTTSCHHHHHHHHHHHHTTSSSEEEESSCSSSSC
T ss_pred hhHHHHHHHHHhhcCCCcEEEEEecHHHHHHHHHHHHhcCCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCccccCC
Confidence 6666666666654 356899999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCcceEEecCCCCChhHHHHHhcccccCCCccEEEEEecCCCChhHHHHHHHHHHHhcccCch
Q 007814 459 DFPDIQHVINYDMPAEIENYVHRIGRTGRCGKTGIATTFINKNQSETTLLDLKHLLQEAKQRIPP 523 (588)
Q Consensus 459 Dip~v~~VI~~~~p~s~~~y~qriGRagR~g~~g~~~~~~~~~~~~~~~~~l~~~l~~~~~~~p~ 523 (588)
|+|++++||+|++|+++..|+||+||+||.|+.|.+++|+++. +...+..+.+.+....+.+|.
T Consensus 323 dip~~~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~l~~~~-~~~~~~~i~~~~~~~~~~~~~ 386 (400)
T 1s2m_A 323 DIQAVNVVINFDFPKTAETYLHRIGRSGRFGHLGLAINLINWN-DRFNLYKIEQELGTEIAAIPA 386 (400)
T ss_dssp CCTTEEEEEESSCCSSHHHHHHHHCBSSCTTCCEEEEEEECGG-GHHHHHHHHHHHTCCCEECCS
T ss_pred CccCCCEEEEeCCCCCHHHHHHhcchhcCCCCCceEEEEeccc-hHHHHHHHHHHhCCCcccccc
Confidence 9999999999999999999999999999999999999999887 444444444443333333443
No 6
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=100.00 E-value=3.8e-56 Score=468.92 Aligned_cols=369 Identities=28% Similarity=0.489 Sum_probs=318.3
Q ss_pred CCCCCCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEE
Q 007814 143 KNFKDMRFPEPILKKLKAKGIVQPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFC 222 (588)
Q Consensus 143 ~~f~~~~l~~~l~~~l~~~g~~~p~~~Q~~~i~~il~g~dvii~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~ 222 (588)
.+|+++++++.+.+.|.+.||..|+|+|.++++.++.|+++++++|||+|||++|++|++..+... ..++++
T Consensus 8 ~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~l~~~--------~~~~~~ 79 (391)
T 1xti_A 8 SGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPV--------TGQVSV 79 (391)
T ss_dssp -CGGGGCCCHHHHHHHHHHSCCSCCHHHHHHHHHHTTTCCEEEECSSCSSHHHHHHHHHHHHCCCC--------TTCCCE
T ss_pred CChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCcEEEECCCCCcHHHHHHHHHHHhhccc--------CCCeeE
Confidence 479999999999999999999999999999999999999999999999999999999998765321 246689
Q ss_pred EEEcCCHHHHHHHHHHHHHHhhcccccCCCCceEEEEEcCcchHHHHHHHhcC-CcEEEeChHHHHHHHHcccCCCCCcc
Q 007814 223 LIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRG-VHIVVATPGRLKDMLAKKKMNLDNCR 301 (588)
Q Consensus 223 Lil~Ptr~La~Q~~~~~~~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~~~-~~IvV~Tp~~L~~~l~~~~~~l~~~~ 301 (588)
||++||++|+.|+++.+.++.... +++++..++|+.........+..+ ++|+|+||++|..++......+..++
T Consensus 80 lil~P~~~L~~q~~~~~~~~~~~~-----~~~~~~~~~g~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~ 154 (391)
T 1xti_A 80 LVMCHTRELAFQISKEYERFSKYM-----PNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNKSLNLKHIK 154 (391)
T ss_dssp EEECSCHHHHHHHHHHHHHHTTTC-----TTCCEEEECTTSCHHHHHHHHHHSCCSEEEECHHHHHHHHHTTSSCCTTCS
T ss_pred EEECCCHHHHHHHHHHHHHHHhhC-----CCeEEEEEeCCCCHHHHHHHHhcCCCCEEEECHHHHHHHHHcCCccccccC
Confidence 999999999999999999997543 478999999998887777666554 79999999999999988888899999
Q ss_pred eeEecCccccccc-CcHHHHHHHHHhhhhcceeEEEecccchHHHHHHHHhcCCCeEEEecCCCC-cccceEEEeeehhh
Q 007814 302 YLTLDEADRLVDL-GFEDDIREVFDHFKAQRQTLLFSATMPTKIQNFARSALVKPVTVNVGRAGA-ANLDVIQEVEYVKQ 379 (588)
Q Consensus 302 ~lViDEah~l~~~-~~~~~i~~i~~~~~~~~q~l~~SAT~~~~i~~~~~~~l~~p~~i~~~~~~~-~~~~~~~~~~~~~~ 379 (588)
+||+||||++.++ ++...+..++...+...|++++|||+++.+..++..++..|..+....... ....+.+.+.....
T Consensus 155 ~vViDEaH~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (391)
T 1xti_A 155 HFILDECDKMLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCRKFMQDPMEIFVDDETKLTLHGLQQYYVKLKD 234 (391)
T ss_dssp EEEECSHHHHTSSHHHHHHHHHHHHTSCSSSEEEEEESSCCSTHHHHHHHHCSSCEEEECCCCCCCCCTTCEEEEEECCG
T ss_pred EEEEeCHHHHhhccchHHHHHHHHhhCCCCceEEEEEeeCCHHHHHHHHHHcCCCeEEEecCccccCcccceEEEEEcCc
Confidence 9999999999884 777888889888888999999999999999999999999998877655432 23345555555566
Q ss_pred HHHHHHHHHHhhc-CCCCEEEEeCccccHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhcCCcEEEEEcCccccCC
Q 007814 380 EAKIVYLLECLQK-TPPPVLIFCENKADVDDIHEYLLLKGVEAVAVHGGKDQEEREYAISSFKAGKKDVLVATDVASKGL 458 (588)
Q Consensus 380 ~~k~~~ll~~l~~-~~~~viIF~~s~~~~~~l~~~L~~~g~~~~~ihg~~~~~~R~~~~~~f~~g~~~vLVaT~~~~~Gl 458 (588)
..+...+...+.. ..+++||||+++..++.+++.|...|+.+..+||++++.+|..+++.|++|+.+|||||+++++|+
T Consensus 235 ~~~~~~l~~~l~~~~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gi 314 (391)
T 1xti_A 235 NEKNRKLFDLLDVLEFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNLFGRGM 314 (391)
T ss_dssp GGHHHHHHHHHHHSCCSEEEEECSCHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTCCSEEEESCCCSSCB
T ss_pred hhHHHHHHHHHHhcCCCcEEEEeCcHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHhcCCCcEEEECChhhcCC
Confidence 6666666666654 457899999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCcceEEecCCCCChhHHHHHhcccccCCCccEEEEEecCCCChhHHHHHHHHHHHhcccCchH
Q 007814 459 DFPDIQHVINYDMPAEIENYVHRIGRTGRCGKTGIATTFINKNQSETTLLDLKHLLQEAKQRIPPV 524 (588)
Q Consensus 459 Dip~v~~VI~~~~p~s~~~y~qriGRagR~g~~g~~~~~~~~~~~~~~~~~l~~~l~~~~~~~p~~ 524 (588)
|+|++++||+|++|+++..|+||+||+||.|+.|.+++|+++.++...+..+.+.+....+.+|..
T Consensus 315 di~~~~~Vi~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 380 (391)
T 1xti_A 315 DIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNDVQDRFEVNISELPDE 380 (391)
T ss_dssp CCTTEEEEEESSCCSSHHHHHHHHCBCSSSCCCCEEEEEECSHHHHHHHHHHHHHTTCCCEECCSC
T ss_pred CcccCCEEEEeCCCCCHHHHHHhcccccCCCCceEEEEEEcccchHHHHHHHHHHhcCChhhCCcc
Confidence 999999999999999999999999999999999999999988755555666665554444444443
No 7
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=100.00 E-value=5.7e-55 Score=455.40 Aligned_cols=352 Identities=34% Similarity=0.570 Sum_probs=313.0
Q ss_pred CCCCCCCCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcC-CCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCC
Q 007814 141 PIKNFKDMRFPEPILKKLKAKGIVQPTPIQVQGLPVVLSG-RDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEG 219 (588)
Q Consensus 141 p~~~f~~~~l~~~l~~~l~~~g~~~p~~~Q~~~i~~il~g-~dvii~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~ 219 (588)
...+|+++++++.+.+.|.+.||..|+|+|.++++.++++ +++++.+|||||||++|++|++..+.. ..+
T Consensus 4 ~~~~f~~~~l~~~~~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~~l~~~~TGsGKT~~~~~~~~~~~~~---------~~~ 74 (367)
T 1hv8_A 4 EYMNFNELNLSDNILNAIRNKGFEKPTDIQMKVIPLFLNDEYNIVAQARTGSGKTASFAIPLIELVNE---------NNG 74 (367)
T ss_dssp CCCCGGGSSCCHHHHHHHHHHTCCSCCHHHHHHHHHHHHTCSEEEEECCSSSSHHHHHHHHHHHHSCS---------SSS
T ss_pred ccCchhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCCEEEECCCCChHHHHHHHHHHHHhcc---------cCC
Confidence 3457999999999999999999999999999999999988 799999999999999999999876432 257
Q ss_pred CEEEEEcCCHHHHHHHHHHHHHHhhcccccCCCCceEEEEEcCcchHHHHHHHhcCCcEEEeChHHHHHHHHcccCCCCC
Q 007814 220 PFCLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMNLDN 299 (588)
Q Consensus 220 ~~~Lil~Ptr~La~Q~~~~~~~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~L~~~l~~~~~~l~~ 299 (588)
+++||++|+++|+.|+++.+.+++... ++++..++|+.....+...+. +++|+|+||++|.+.+......+.+
T Consensus 75 ~~~lil~P~~~L~~q~~~~~~~~~~~~------~~~v~~~~~~~~~~~~~~~~~-~~~iiv~T~~~l~~~~~~~~~~~~~ 147 (367)
T 1hv8_A 75 IEAIILTPTRELAIQVADEIESLKGNK------NLKIAKIYGGKAIYPQIKALK-NANIVVGTPGRILDHINRGTLNLKN 147 (367)
T ss_dssp CCEEEECSCHHHHHHHHHHHHHHHCSS------CCCEEEECTTSCHHHHHHHHH-TCSEEEECHHHHHHHHHTTCSCTTS
T ss_pred CcEEEEcCCHHHHHHHHHHHHHHhCCC------CceEEEEECCcchHHHHhhcC-CCCEEEecHHHHHHHHHcCCccccc
Confidence 789999999999999999999997543 788999999988877766665 5899999999999999888888899
Q ss_pred cceeEecCcccccccCcHHHHHHHHHhhhhcceeEEEecccchHHHHHHHHhcCCCeEEEecCCCCcccceEEEeeehhh
Q 007814 300 CRYLTLDEADRLVDLGFEDDIREVFDHFKAQRQTLLFSATMPTKIQNFARSALVKPVTVNVGRAGAANLDVIQEVEYVKQ 379 (588)
Q Consensus 300 ~~~lViDEah~l~~~~~~~~i~~i~~~~~~~~q~l~~SAT~~~~i~~~~~~~l~~p~~i~~~~~~~~~~~~~~~~~~~~~ 379 (588)
+++||+||||++.+++|...+..++..++...+++++|||+++.+..+...++.++..+..... ..+.+.+.....
T Consensus 148 ~~~iIiDEah~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~ 223 (367)
T 1hv8_A 148 VKYFILDEADEMLNMGFIKDVEKILNACNKDKRILLFSATMPREILNLAKKYMGDYSFIKAKIN----ANIEQSYVEVNE 223 (367)
T ss_dssp CCEEEEETHHHHHTTTTHHHHHHHHHTSCSSCEEEEECSSCCHHHHHHHHHHCCSEEEEECCSS----SSSEEEEEECCG
T ss_pred CCEEEEeCchHhhhhchHHHHHHHHHhCCCCceEEEEeeccCHHHHHHHHHHcCCCeEEEecCC----CCceEEEEEeCh
Confidence 9999999999999999999999999999889999999999999999999888887766554322 345555566667
Q ss_pred HHHHHHHHHHhhcCCCCEEEEeCccccHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhcCCcEEEEEcCccccCCC
Q 007814 380 EAKIVYLLECLQKTPPPVLIFCENKADVDDIHEYLLLKGVEAVAVHGGKDQEEREYAISSFKAGKKDVLVATDVASKGLD 459 (588)
Q Consensus 380 ~~k~~~ll~~l~~~~~~viIF~~s~~~~~~l~~~L~~~g~~~~~ihg~~~~~~R~~~~~~f~~g~~~vLVaT~~~~~GlD 459 (588)
..++..+...+...+.++||||+++..++.+++.|...|+.+..+||++++.+|..+++.|++|+.+|||||+++++|+|
T Consensus 224 ~~~~~~l~~~l~~~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gid 303 (367)
T 1hv8_A 224 NERFEALCRLLKNKEFYGLVFCKTKRDTKELASMLRDIGFKAGAIHGDLSQSQREKVIRLFKQKKIRILIATDVMSRGID 303 (367)
T ss_dssp GGHHHHHHHHHCSTTCCEEEECSSHHHHHHHHHHHHHTTCCEEEECSSSCHHHHHHHHHHHHTTSSSEEEECTTHHHHCC
T ss_pred HHHHHHHHHHHhcCCCcEEEEECCHHHHHHHHHHHHhcCCCeEEeeCCCCHHHHHHHHHHHHcCCCeEEEECChhhcCCC
Confidence 77888888888888889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcceEEecCCCCChhHHHHHhcccccCCCccEEEEEecCCCChhHHHHHHHH
Q 007814 460 FPDIQHVINYDMPAEIENYVHRIGRTGRCGKTGIATTFINKNQSETTLLDLKHL 513 (588)
Q Consensus 460 ip~v~~VI~~~~p~s~~~y~qriGRagR~g~~g~~~~~~~~~~~~~~~~~l~~~ 513 (588)
+|++++||++++|+|+..|+||+||+||.|+.|.+++|+++. +...+..+.+.
T Consensus 304 ~~~~~~Vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~-~~~~~~~i~~~ 356 (367)
T 1hv8_A 304 VNDLNCVINYHLPQNPESYMHRIGRTGRAGKKGKAISIINRR-EYKKLRYIERA 356 (367)
T ss_dssp CSCCSEEEESSCCSCHHHHHHHSTTTCCSSSCCEEEEEECTT-SHHHHHHHHHH
T ss_pred cccCCEEEEecCCCCHHHhhhcccccccCCCccEEEEEEcHH-HHHHHHHHHHH
Confidence 999999999999999999999999999999999999999887 44444444433
No 8
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=100.00 E-value=6.7e-55 Score=459.48 Aligned_cols=357 Identities=30% Similarity=0.499 Sum_probs=306.9
Q ss_pred CCCCCCCCCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcC--CCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCC
Q 007814 140 PPIKNFKDMRFPEPILKKLKAKGIVQPTPIQVQGLPVVLSG--RDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPG 217 (588)
Q Consensus 140 ~p~~~f~~~~l~~~l~~~l~~~g~~~p~~~Q~~~i~~il~g--~dvii~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~ 217 (588)
+...+|+++++++.+++.|.+.||..|+|+|.++++.++.+ +++++++|||||||++|++|++..+... .
T Consensus 2 ~~~~~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~~~~~--------~ 73 (395)
T 3pey_A 2 AMAKSFDELGLAPELLKGIYAMKFQKPSKIQERALPLLLHNPPRNMIAQSQSGTGKTAAFSLTMLTRVNPE--------D 73 (395)
T ss_dssp --CCSSTTSCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHCSSCCCEEEECCTTSCHHHHHHHHHHHHCCTT--------C
T ss_pred ccccCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHHhccC--------C
Confidence 34679999999999999999999999999999999999988 9999999999999999999999775432 3
Q ss_pred CCCEEEEEcCCHHHHHHHHHHHHHHhhcccccCCCCceEEEEEcCcchHHHHHHHhcCCcEEEeChHHHHHHHHcccCCC
Q 007814 218 EGPFCLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMNL 297 (588)
Q Consensus 218 ~~~~~Lil~Ptr~La~Q~~~~~~~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~L~~~l~~~~~~l 297 (588)
.++++|||+||++|+.|+++.+.+++... ++.+....++...... ..+++|+|+||++|.+++.+....+
T Consensus 74 ~~~~~lil~P~~~L~~q~~~~~~~~~~~~------~~~~~~~~~~~~~~~~----~~~~~iiv~T~~~l~~~~~~~~~~~ 143 (395)
T 3pey_A 74 ASPQAICLAPSRELARQTLEVVQEMGKFT------KITSQLIVPDSFEKNK----QINAQVIVGTPGTVLDLMRRKLMQL 143 (395)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHTTTS------CCCEEEESTTSSCTTS----CBCCSEEEECHHHHHHHHHTTCBCC
T ss_pred CCccEEEECCCHHHHHHHHHHHHHHhccc------CeeEEEEecCchhhhc----cCCCCEEEEcHHHHHHHHHcCCccc
Confidence 57789999999999999999999987543 6777777776543322 2368999999999999998888889
Q ss_pred CCcceeEecCcccccc-cCcHHHHHHHHHhhhhcceeEEEecccchHHHHHHHHhcCCCeEEEecCCCCcccceEEEeee
Q 007814 298 DNCRYLTLDEADRLVD-LGFEDDIREVFDHFKAQRQTLLFSATMPTKIQNFARSALVKPVTVNVGRAGAANLDVIQEVEY 376 (588)
Q Consensus 298 ~~~~~lViDEah~l~~-~~~~~~i~~i~~~~~~~~q~l~~SAT~~~~i~~~~~~~l~~p~~i~~~~~~~~~~~~~~~~~~ 376 (588)
.++++||+||||++.+ +++...+..+...++...|++++|||+++.+..+...++.++..+...........+.+.+..
T Consensus 144 ~~~~~iIiDEah~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (395)
T 3pey_A 144 QKIKIFVLDEADNMLDQQGLGDQCIRVKRFLPKDTQLVLFSATFADAVRQYAKKIVPNANTLELQTNEVNVDAIKQLYMD 223 (395)
T ss_dssp TTCCEEEEETHHHHHHSTTHHHHHHHHHHTSCTTCEEEEEESCCCHHHHHHHHHHSCSCEEECCCGGGCSCTTEEEEEEE
T ss_pred ccCCEEEEEChhhhcCccccHHHHHHHHHhCCCCcEEEEEEecCCHHHHHHHHHhCCCCeEEEccccccccccccEEEEE
Confidence 9999999999999998 688889999999999999999999999999999999999988887766655555556555555
Q ss_pred hh-hHHHHHHHHHHhhc-CCCCEEEEeCccccHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhcCCcEEEEEcCcc
Q 007814 377 VK-QEAKIVYLLECLQK-TPPPVLIFCENKADVDDIHEYLLLKGVEAVAVHGGKDQEEREYAISSFKAGKKDVLVATDVA 454 (588)
Q Consensus 377 ~~-~~~k~~~ll~~l~~-~~~~viIF~~s~~~~~~l~~~L~~~g~~~~~ihg~~~~~~R~~~~~~f~~g~~~vLVaT~~~ 454 (588)
.. ...+...+...+.. ..+++||||+++..++.+++.|...++.+..+||++++.+|..+++.|++|+.+|||||+++
T Consensus 224 ~~~~~~~~~~l~~~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~ 303 (395)
T 3pey_A 224 CKNEADKFDVLTELYGLMTIGSSIIFVATKKTANVLYGKLKSEGHEVSILHGDLQTQERDRLIDDFREGRSKVLITTNVL 303 (395)
T ss_dssp CSSHHHHHHHHHHHHTTTTSSEEEEECSCHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHTTSCCEEEECGGG
T ss_pred cCchHHHHHHHHHHHHhccCCCEEEEeCCHHHHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHHHHCCCCCEEEECChh
Confidence 43 44455555555544 35689999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCCcceEEecCCCC------ChhHHHHHhcccccCCCccEEEEEecCCCChhHHHHHHHHH
Q 007814 455 SKGLDFPDIQHVINYDMPA------EIENYVHRIGRTGRCGKTGIATTFINKNQSETTLLDLKHLL 514 (588)
Q Consensus 455 ~~GlDip~v~~VI~~~~p~------s~~~y~qriGRagR~g~~g~~~~~~~~~~~~~~~~~l~~~l 514 (588)
++|+|+|++++||+||+|+ ++..|+||+||+||.|+.|.+++|+...++...+..+.+.+
T Consensus 304 ~~Gidip~~~~Vi~~~~p~~~~~~~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~~i~~~~ 369 (395)
T 3pey_A 304 ARGIDIPTVSMVVNYDLPTLANGQADPATYIHRIGRTGRFGRKGVAISFVHDKNSFNILSAIQKYF 369 (395)
T ss_dssp SSSCCCTTEEEEEESSCCBCTTSSBCHHHHHHHHTTSSCTTCCEEEEEEECSHHHHHHHHHHHHHT
T ss_pred hcCCCcccCCEEEEcCCCCCCcCCCCHHHhhHhccccccCCCCceEEEEEechHHHHHHHHHHHHh
Confidence 9999999999999999999 99999999999999999999999998764444444444443
No 9
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=100.00 E-value=3.8e-55 Score=464.37 Aligned_cols=362 Identities=30% Similarity=0.484 Sum_probs=311.4
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcC--CCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCC
Q 007814 139 PPPIKNFKDMRFPEPILKKLKAKGIVQPTPIQVQGLPVVLSG--RDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVP 216 (588)
Q Consensus 139 p~p~~~f~~~~l~~~l~~~l~~~g~~~p~~~Q~~~i~~il~g--~dvii~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~ 216 (588)
+.++.+|+++++++.+++.|.+.||..|+|+|.++++.++++ ++++++||||||||++|++|++..+...
T Consensus 21 ~~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~~~lv~apTGsGKT~~~~~~~~~~~~~~-------- 92 (412)
T 3fht_A 21 LYSVKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPA-------- 92 (412)
T ss_dssp TCCSSCTGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHHSSSCCCEEEECCTTSCHHHHHHHHHHHHCCTT--------
T ss_pred ccccCCHhhCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCCeEEEECCCCchHHHHHHHHHHHHhhhc--------
Confidence 345789999999999999999999999999999999999987 9999999999999999999999875432
Q ss_pred CCCCEEEEEcCCHHHHHHHHHHHHHHhhcccccCCCCceEEEEEcCcchHHHHHHHhcCCcEEEeChHHHHHHHHc-ccC
Q 007814 217 GEGPFCLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAK-KKM 295 (588)
Q Consensus 217 ~~~~~~Lil~Ptr~La~Q~~~~~~~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~L~~~l~~-~~~ 295 (588)
..++++|||+||++|+.|+++.+.++.... +++.+....++....... ..+++|+|+||++|.+++.+ ..+
T Consensus 93 ~~~~~~lil~P~~~L~~q~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~---~~~~~ivv~T~~~l~~~~~~~~~~ 164 (412)
T 3fht_A 93 NKYPQCLCLSPTYELALQTGKVIEQMGKFY-----PELKLAYAVRGNKLERGQ---KISEQIVIGTPGTVLDWCSKLKFI 164 (412)
T ss_dssp SCSCCEEEECSSHHHHHHHHHHHHHHTTTS-----TTCCEEEECTTCCCCTTC---CCCCSEEEECHHHHHHHHTTSCSS
T ss_pred CCCCCEEEECCCHHHHHHHHHHHHHHHhhc-----ccceEEEeecCcchhhhh---cCCCCEEEECchHHHHHHHhcCCc
Confidence 356789999999999999999999986532 467888888876543321 34579999999999999865 566
Q ss_pred CCCCcceeEecCcccccc-cCcHHHHHHHHHhhhhcceeEEEecccchHHHHHHHHhcCCCeEEEecCCCCcccceEEEe
Q 007814 296 NLDNCRYLTLDEADRLVD-LGFEDDIREVFDHFKAQRQTLLFSATMPTKIQNFARSALVKPVTVNVGRAGAANLDVIQEV 374 (588)
Q Consensus 296 ~l~~~~~lViDEah~l~~-~~~~~~i~~i~~~~~~~~q~l~~SAT~~~~i~~~~~~~l~~p~~i~~~~~~~~~~~~~~~~ 374 (588)
.+.++++||+||||++.+ .++...+..++..++...|++++|||+++.+..++..++.++..+...........+.+.+
T Consensus 165 ~~~~~~~iViDEah~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (412)
T 3fht_A 165 DPKKIKVFVLDEADVMIATQGHQDQSIRIQRMLPRNCQMLLFSATFEDSVWKFAQKVVPDPNVIKLKREEETLDTIKQYY 244 (412)
T ss_dssp CGGGCCEEEEETHHHHHSTTTTHHHHHHHHHTSCTTCEEEEEESCCCHHHHHHHHHHSSSCEEECCCGGGSSCTTEEEEE
T ss_pred ChhhCcEEEEeCHHHHhhcCCcHHHHHHHHhhCCCCceEEEEEeecCHHHHHHHHHhcCCCeEEeeccccccccCceEEE
Confidence 778999999999999987 6888889999999999999999999999999999999999998887776666666666665
Q ss_pred eehh-hHHHHHHHHHHhhc-CCCCEEEEeCccccHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhcCCcEEEEEcC
Q 007814 375 EYVK-QEAKIVYLLECLQK-TPPPVLIFCENKADVDDIHEYLLLKGVEAVAVHGGKDQEEREYAISSFKAGKKDVLVATD 452 (588)
Q Consensus 375 ~~~~-~~~k~~~ll~~l~~-~~~~viIF~~s~~~~~~l~~~L~~~g~~~~~ihg~~~~~~R~~~~~~f~~g~~~vLVaT~ 452 (588)
.... ...+...+...+.. ..+++||||+++..++.+++.|...++.+..+||++++.+|..+++.|++|+.+|||||+
T Consensus 245 ~~~~~~~~~~~~l~~~~~~~~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~ 324 (412)
T 3fht_A 245 VLCSSRDEKFQALCNLYGAITIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREGKEKVLVTTN 324 (412)
T ss_dssp EECSSHHHHHHHHHHHHHHHSSSEEEEECSSHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHTTSCSEEEECG
T ss_pred EEcCChHHHHHHHHHHHhhcCCCCEEEEeCCHHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHHHHHCCCCcEEEEcC
Confidence 5554 34556666665544 457899999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCCCCCcceEEecCCC------CChhHHHHHhcccccCCCccEEEEEecCCCChhHHHHHHHHHHH
Q 007814 453 VASKGLDFPDIQHVINYDMP------AEIENYVHRIGRTGRCGKTGIATTFINKNQSETTLLDLKHLLQE 516 (588)
Q Consensus 453 ~~~~GlDip~v~~VI~~~~p------~s~~~y~qriGRagR~g~~g~~~~~~~~~~~~~~~~~l~~~l~~ 516 (588)
++++|+|+|++++||+|++| .+...|+||+||+||.|+.|.+++|++..++...+..+.+.+..
T Consensus 325 ~~~~Gidip~~~~Vi~~~~p~~~~~~~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~~i~~~~~~ 394 (412)
T 3fht_A 325 VCARGIDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLAVNMVDSKHSMNILNRIQEHFNK 394 (412)
T ss_dssp GGTSSCCCTTEEEEEESSCCBCSSSSBCHHHHHHHHTTSSCTTCCEEEEEEECSHHHHHHHHHHHHHHTC
T ss_pred ccccCCCccCCCEEEEECCCCCCCCCcchheeecccCcccCCCCCceEEEEEcChhhHHHHHHHHHHHCC
Confidence 99999999999999999999 46789999999999999999999999876445556665555543
No 10
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=100.00 E-value=9.7e-55 Score=481.48 Aligned_cols=356 Identities=29% Similarity=0.461 Sum_probs=299.0
Q ss_pred CCHHHHHHHHHCCCCCCcHHHHHHHHHHh--cCCCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEEEEEcC
Q 007814 150 FPEPILKKLKAKGIVQPTPIQVQGLPVVL--SGRDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFCLIVCP 227 (588)
Q Consensus 150 l~~~l~~~l~~~g~~~p~~~Q~~~i~~il--~g~dvii~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~Lil~P 227 (588)
+++.++++|...||..|+|+|.++|+.++ .|+|++++||||||||++|++|++..+..... ....++++|||+|
T Consensus 28 l~~~l~~~l~~~g~~~~~~~Q~~~i~~il~~~~~dvlv~apTGsGKTl~~~lpil~~l~~~~~----~~~~~~~~lvl~P 103 (579)
T 3sqw_A 28 LDKEIHKAITRMEFPGLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHLINTKF----DSQYMVKAVIVAP 103 (579)
T ss_dssp SCHHHHHHHHTTTCSSCCHHHHHHHHHHHCSSSEEEEEECCTTSCHHHHHHHHHHHHHHHTTT----SSTTSCCEEEECS
T ss_pred CCHHHHHHHHHCCCCCCCHHHHHHHHHHHccCCCeEEEEcCCCcHHHHHHHHHHHHHHHhccc----cccCCCeEEEEcc
Confidence 99999999999999999999999999999 78999999999999999999999998876431 1234678999999
Q ss_pred CHHHHHHHHHHHHHHhhcccccCCCCceEEEEEcCcchHHHHHHHh-cCCcEEEeChHHHHHHHHcc-cCCCCCcceeEe
Q 007814 228 SRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVK-RGVHIVVATPGRLKDMLAKK-KMNLDNCRYLTL 305 (588)
Q Consensus 228 tr~La~Q~~~~~~~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~-~~~~IvV~Tp~~L~~~l~~~-~~~l~~~~~lVi 305 (588)
|++||.|+++.+.+++... .+.+.+.+..+.||.....+...+. .+++|+|+||++|.+++.+. ...++.+++|||
T Consensus 104 tr~La~Q~~~~~~~~~~~~--~~~~~~~~~~~~gg~~~~~~~~~l~~~~~~IlV~Tp~~l~~~l~~~~~~~~~~~~~lVi 181 (579)
T 3sqw_A 104 TRDLALQIEAEVKKIHDMN--YGLKKYACVSLVGGTDFRAAMNKMNKLRPNIVIATPGRLIDVLEKYSNKFFRFVDYKVL 181 (579)
T ss_dssp SHHHHHHHHHHHHHHHHHC--GGGTTSCEEEECTTSCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHHHCTTCCEEEE
T ss_pred hHHHHHHHHHHHHHHHhhc--ccccceEEEEEECCccHHHHHHHHhcCCCCEEEECHHHHHHHHHhccccccccCCEEEE
Confidence 9999999999999986432 1234678889999988888877774 47999999999999988764 456788999999
Q ss_pred cCcccccccCcHHHHHHHHHhhhh-------cceeEEEecccchHHHHHHHHhcCCCeEEEecCCC----CcccceEEEe
Q 007814 306 DEADRLVDLGFEDDIREVFDHFKA-------QRQTLLFSATMPTKIQNFARSALVKPVTVNVGRAG----AANLDVIQEV 374 (588)
Q Consensus 306 DEah~l~~~~~~~~i~~i~~~~~~-------~~q~l~~SAT~~~~i~~~~~~~l~~p~~i~~~~~~----~~~~~~~~~~ 374 (588)
||||+|.+++|...+..++..++. .+|+++||||+++.+..++..++..+..+.+.... .....+.+.+
T Consensus 182 DEah~l~~~gf~~~~~~i~~~l~~~~~~~~~~~~~l~~SAT~~~~v~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~ 261 (579)
T 3sqw_A 182 DEADRLLEIGFRDDLETISGILNEKNSKSADNIKTLLFSATLDDKVQKLANNIMNKKECLFLDTVDKNEPEAHERIDQSV 261 (579)
T ss_dssp ETHHHHTSTTTHHHHHHHHHHHHHHCSSCTTCCEEEEEESSCCTHHHHHTTTTCCSSEEEEEESSCSSSCSSCTTEEEEE
T ss_pred EChHHhhcCCCHHHHHHHHHHhhhhhcccccCceEEEEeccCChHHHHHHHHHcCCCceEEEeecCccccccccccceEE
Confidence 999999999999999999888764 56999999999999999999999888766554322 2223344433
Q ss_pred eehhh-H----HHHHHHHHHhh--cCCCCEEEEeCccccHHHHHHHHHHc---CCcEEEEeCCCCHHHHHHHHHHHhcCC
Q 007814 375 EYVKQ-E----AKIVYLLECLQ--KTPPPVLIFCENKADVDDIHEYLLLK---GVEAVAVHGGKDQEEREYAISSFKAGK 444 (588)
Q Consensus 375 ~~~~~-~----~k~~~ll~~l~--~~~~~viIF~~s~~~~~~l~~~L~~~---g~~~~~ihg~~~~~~R~~~~~~f~~g~ 444 (588)
..... . ..+..+...+. ..+.++||||+++..++.+++.|... ++.+..+||+|++.+|..+++.|++|+
T Consensus 262 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~iVF~~t~~~~~~l~~~L~~~~~~~~~v~~~hg~~~~~~R~~~~~~F~~g~ 341 (579)
T 3sqw_A 262 VISEKFANSIFAAVEHIKKQIKERDSNYKAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQNKRTSLVKRFKKDE 341 (579)
T ss_dssp EEESSTTHHHHHHHHHHHHHHHHTTTCCEEEEECSSHHHHHHHHHHHHHHHTTTSCEEEESTTSCHHHHHHHHHHHHHCS
T ss_pred EEecchhhhHHHHHHHHHHHHhhcCCCCcEEEECCcHHHHHHHHHHHHHhhcCCCcEEEecCCCCHHHHHHHHHHhhcCC
Confidence 33321 1 22333344443 34668999999999999999999887 999999999999999999999999999
Q ss_pred cEEEEEcCccccCCCCCCcceEEecCCCCChhHHHHHhcccccCCCccEEEEEecCCCChhHHHHHHH
Q 007814 445 KDVLVATDVASKGLDFPDIQHVINYDMPAEIENYVHRIGRTGRCGKTGIATTFINKNQSETTLLDLKH 512 (588)
Q Consensus 445 ~~vLVaT~~~~~GlDip~v~~VI~~~~p~s~~~y~qriGRagR~g~~g~~~~~~~~~~~~~~~~~l~~ 512 (588)
.+|||||+++++|||+|++++||+|++|.++..|+||+|||||.|+.|.+++|+.+. +...+..+..
T Consensus 342 ~~vLVaT~~~~~GiDip~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~g~~i~~~~~~-e~~~~~~l~~ 408 (579)
T 3sqw_A 342 SGILVCTDVGARGMDFPNVHEVLQIGVPSELANYIHRIGRTARSGKEGSSVLFICKD-ELPFVRELED 408 (579)
T ss_dssp SEEEEECGGGTSSCCCTTCCEEEEESCCSSTTHHHHHHTTSSCTTCCEEEEEEEEGG-GHHHHHHHHH
T ss_pred CeEEEEcchhhcCCCcccCCEEEEcCCCCCHHHhhhhccccccCCCCceEEEEEccc-HHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999987 5555555544
No 11
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=100.00 E-value=1.6e-56 Score=472.16 Aligned_cols=372 Identities=28% Similarity=0.523 Sum_probs=189.2
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCC
Q 007814 138 IPPPIKNFKDMRFPEPILKKLKAKGIVQPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPG 217 (588)
Q Consensus 138 ~p~p~~~f~~~~l~~~l~~~l~~~g~~~p~~~Q~~~i~~il~g~dvii~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~ 217 (588)
...+..+|+++++++.+.+.|...||..|+|+|.++++.+++|+++++++|||+|||++|++|++..+... .
T Consensus 16 ~~~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~lv~~~TGsGKT~~~~~~~~~~l~~~--------~ 87 (394)
T 1fuu_A 16 YDKVVYKFDDMELDENLLRGVFGYGFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQRIDTS--------V 87 (394)
T ss_dssp SCCCCCSSGGGCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHHTCCEEECCCSSHHHHHHHHHHHHHHCCTT--------C
T ss_pred cccccCChhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHhhcc--------C
Confidence 44567789999999999999999999999999999999999999999999999999999999999775432 3
Q ss_pred CCCEEEEEcCCHHHHHHHHHHHHHHhhcccccCCCCceEEEEEcCcchHHHHHHHhcCCcEEEeChHHHHHHHHcccCCC
Q 007814 218 EGPFCLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMNL 297 (588)
Q Consensus 218 ~~~~~Lil~Ptr~La~Q~~~~~~~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~L~~~l~~~~~~l 297 (588)
.++++||++||++|+.|+++.+.+++... ++++..++|+.........+. +++|+|+||++|.+.+......+
T Consensus 88 ~~~~~lil~P~~~L~~q~~~~~~~~~~~~------~~~~~~~~g~~~~~~~~~~~~-~~~i~v~T~~~l~~~~~~~~~~~ 160 (394)
T 1fuu_A 88 KAPQALMLAPTRELALQIQKVVMALAFHM------DIKVHACIGGTSFVEDAEGLR-DAQIVVGTPGRVFDNIQRRRFRT 160 (394)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHTTTS------CCCEEEECSSCCHHHHHHHHH-HCSEEEECHHHHHHHHHTTSSCC
T ss_pred CCCCEEEEcCCHHHHHHHHHHHHHHhccC------CeeEEEEeCCCchHHHHhhcC-CCCEEEECHHHHHHHHHhCCcch
Confidence 57789999999999999999999997654 788999999988776666555 57999999999999998888888
Q ss_pred CCcceeEecCcccccccCcHHHHHHHHHhhhhcceeEEEecccchHHHHHHHHhcCCCeEEEecCCCCcccceEEEeeeh
Q 007814 298 DNCRYLTLDEADRLVDLGFEDDIREVFDHFKAQRQTLLFSATMPTKIQNFARSALVKPVTVNVGRAGAANLDVIQEVEYV 377 (588)
Q Consensus 298 ~~~~~lViDEah~l~~~~~~~~i~~i~~~~~~~~q~l~~SAT~~~~i~~~~~~~l~~p~~i~~~~~~~~~~~~~~~~~~~ 377 (588)
..+++||+||||++.+++|...+..++..++...|++++|||+++.+..+...++..|..+...........+.+.+...
T Consensus 161 ~~~~~vIiDEah~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (394)
T 1fuu_A 161 DKIKMFILDEADEMLSSGFKEQIYQIFTLLPPTTQVVLLSATMPNDVLEVTTKFMRNPVRILVKKDELTLEGIKQFYVNV 240 (394)
T ss_dssp TTCCEEEEETHHHHHHTTCHHHHHHHHHHSCTTCEEEEECSSCCHHHHHHHHHHCCSCEEEEECC---------------
T ss_pred hhCcEEEEEChHHhhCCCcHHHHHHHHHhCCCCceEEEEEEecCHHHHHHHHHhcCCCeEEEecCccccCCCceEEEEEc
Confidence 99999999999999999999999999999999999999999999999999999999998887765544444444444333
Q ss_pred hhHH-HHHHHHHHhhc-CCCCEEEEeCccccHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhcCCcEEEEEcCccc
Q 007814 378 KQEA-KIVYLLECLQK-TPPPVLIFCENKADVDDIHEYLLLKGVEAVAVHGGKDQEEREYAISSFKAGKKDVLVATDVAS 455 (588)
Q Consensus 378 ~~~~-k~~~ll~~l~~-~~~~viIF~~s~~~~~~l~~~L~~~g~~~~~ihg~~~~~~R~~~~~~f~~g~~~vLVaT~~~~ 455 (588)
.... +...+...+.. ..+++||||+++..++.+++.|...++.+..+||++++.+|..+++.|++|+.+|||||++++
T Consensus 241 ~~~~~~~~~l~~~~~~~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~ 320 (394)
T 1fuu_A 241 EEEEYKYECLTDLYDSISVTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIMKEFRSGSSRILISTDLLA 320 (394)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CchhhHHHHHHHHHhcCCCCcEEEEECCHHHHHHHHHHHHHcCCeEEEeeCCCCHHHHHHHHHHHHCCCCcEEEECChhh
Confidence 3322 33334444433 356899999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCcceEEecCCCCChhHHHHHhcccccCCCccEEEEEecCCCChhHHHHHHHHHHHhcccCchHH
Q 007814 456 KGLDFPDIQHVINYDMPAEIENYVHRIGRTGRCGKTGIATTFINKNQSETTLLDLKHLLQEAKQRIPPVL 525 (588)
Q Consensus 456 ~GlDip~v~~VI~~~~p~s~~~y~qriGRagR~g~~g~~~~~~~~~~~~~~~~~l~~~l~~~~~~~p~~l 525 (588)
+|+|+|++++||+|++|+++..|+||+||+||.|+.|.+++|+++. +...+..+.+++......+|..+
T Consensus 321 ~Gldi~~~~~Vi~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~~~~ 389 (394)
T 1fuu_A 321 RGIDVQQVSLVINYDLPANKENYIHRIGRGGRFGRKGVAINFVTNE-DVGAMRELEKFYSTQIEELPSDI 389 (394)
T ss_dssp ----------------------------------------------------------------------
T ss_pred cCCCcccCCEEEEeCCCCCHHHHHHHcCcccCCCCCceEEEEEchh-HHHHHHHHHHHhCCcccccCcch
Confidence 9999999999999999999999999999999999999999999887 55566666666655555555443
No 12
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=100.00 E-value=1.6e-54 Score=478.80 Aligned_cols=357 Identities=29% Similarity=0.458 Sum_probs=297.4
Q ss_pred CCHHHHHHHHHCCCCCCcHHHHHHHHHHh--cCCCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEEEEEcC
Q 007814 150 FPEPILKKLKAKGIVQPTPIQVQGLPVVL--SGRDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFCLIVCP 227 (588)
Q Consensus 150 l~~~l~~~l~~~g~~~p~~~Q~~~i~~il--~g~dvii~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~Lil~P 227 (588)
+++.++++|...||..|+|+|.++|+.++ .++|++++||||||||++|++|++..+..... ....++++|||+|
T Consensus 79 l~~~l~~~l~~~g~~~~~~~Q~~~i~~~l~~~~~~~lv~apTGsGKTl~~~lpil~~l~~~~~----~~~~~~~~lil~P 154 (563)
T 3i5x_A 79 LDKEIHKAITRMEFPGLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHLINTKF----DSQYMVKAVIVAP 154 (563)
T ss_dssp SCHHHHHHHHTTCCSSCCHHHHHHHHHHHSSSSEEEEEECCTTSCHHHHHHHHHHHHHHHTTT----SSTTSCCEEEECS
T ss_pred CCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCCeEEEECCCCCCccHHHHHHHHHHHHhccc----cccCCeeEEEEcC
Confidence 99999999999999999999999999999 67899999999999999999999998876431 1234678999999
Q ss_pred CHHHHHHHHHHHHHHhhcccccCCCCceEEEEEcCcchHHHHHHH-hcCCcEEEeChHHHHHHHHcc-cCCCCCcceeEe
Q 007814 228 SRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVV-KRGVHIVVATPGRLKDMLAKK-KMNLDNCRYLTL 305 (588)
Q Consensus 228 tr~La~Q~~~~~~~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l-~~~~~IvV~Tp~~L~~~l~~~-~~~l~~~~~lVi 305 (588)
|++||.|+++.+.+++... .+.+.+.+..++||.....+...+ ..+++|+|+||++|.+++.+. ...++.+++|||
T Consensus 155 tr~La~Q~~~~~~~~~~~~--~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~~lVi 232 (563)
T 3i5x_A 155 TRDLALQIEAEVKKIHDMN--YGLKKYACVSLVGGTDFRAAMNKMNKLRPNIVIATPGRLIDVLEKYSNKFFRFVDYKVL 232 (563)
T ss_dssp SHHHHHHHHHHHHHHHHHC--GGGTTSCEEEECTTSCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHHHCTTCCEEEE
T ss_pred cHHHHHHHHHHHHHHHhhc--cccCceeEEEEECCcCHHHHHHHHhcCCCCEEEECcHHHHHHHHhccccccccceEEEE
Confidence 9999999999999986532 123467788899998888777766 457999999999999988764 345788999999
Q ss_pred cCcccccccCcHHHHHHHHHhhhh-------cceeEEEecccchHHHHHHHHhcCCCeEEEecCCC----CcccceEEEe
Q 007814 306 DEADRLVDLGFEDDIREVFDHFKA-------QRQTLLFSATMPTKIQNFARSALVKPVTVNVGRAG----AANLDVIQEV 374 (588)
Q Consensus 306 DEah~l~~~~~~~~i~~i~~~~~~-------~~q~l~~SAT~~~~i~~~~~~~l~~p~~i~~~~~~----~~~~~~~~~~ 374 (588)
||||+|.+++|...+..++..++. .+|+++||||+++.+..++..++..+..+.+.... .....+.+.+
T Consensus 233 DEah~l~~~~f~~~~~~i~~~l~~~~~~~~~~~~~l~~SAT~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (563)
T 3i5x_A 233 DEADRLLEIGFRDDLETISGILNEKNSKSADNIKTLLFSATLDDKVQKLANNIMNKKECLFLDTVDKNEPEAHERIDQSV 312 (563)
T ss_dssp ETHHHHTSTTTHHHHHHHHHHHHHHCSSCTTCCEEEEEESSCCTHHHHHTTTTCCSSEEEEEESSCSSSCSSCTTEEEEE
T ss_pred eCHHHHhccchHHHHHHHHHhhhhccccCccCceEEEEEccCCHHHHHHHHHhcCCCceEEEeccCCCCccccccCceEE
Confidence 999999999999999999888754 56899999999999999999999887766553322 2223344433
Q ss_pred eehhh-HH----HHHHHHHHhh--cCCCCEEEEeCccccHHHHHHHHHHc---CCcEEEEeCCCCHHHHHHHHHHHhcCC
Q 007814 375 EYVKQ-EA----KIVYLLECLQ--KTPPPVLIFCENKADVDDIHEYLLLK---GVEAVAVHGGKDQEEREYAISSFKAGK 444 (588)
Q Consensus 375 ~~~~~-~~----k~~~ll~~l~--~~~~~viIF~~s~~~~~~l~~~L~~~---g~~~~~ihg~~~~~~R~~~~~~f~~g~ 444 (588)
..... .. .+..+...+. ..+.++||||+++..++.+++.|... ++.+..+||+|++.+|..+++.|++|+
T Consensus 313 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~iVF~~s~~~~~~l~~~L~~~~~~~~~v~~~h~~~~~~~R~~~~~~f~~g~ 392 (563)
T 3i5x_A 313 VISEKFANSIFAAVEHIKKQIKERDSNYKAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQNKRTSLVKRFKKDE 392 (563)
T ss_dssp EEESSTTHHHHHHHHHHHHHHHHTTTCCEEEEECSCHHHHHHHHHHHHHHHTTTSCEEEESTTSCHHHHHHHHHHHHHCS
T ss_pred EECchhHhhHHHHHHHHHHHHhhcCCCCcEEEEcCcHHHHHHHHHHHHHhccCCceEEEecCCCCHHHHHHHHHHHhcCC
Confidence 33221 12 2233333333 34669999999999999999999887 999999999999999999999999999
Q ss_pred cEEEEEcCccccCCCCCCcceEEecCCCCChhHHHHHhcccccCCCccEEEEEecCCCChhHHHHHHHH
Q 007814 445 KDVLVATDVASKGLDFPDIQHVINYDMPAEIENYVHRIGRTGRCGKTGIATTFINKNQSETTLLDLKHL 513 (588)
Q Consensus 445 ~~vLVaT~~~~~GlDip~v~~VI~~~~p~s~~~y~qriGRagR~g~~g~~~~~~~~~~~~~~~~~l~~~ 513 (588)
.+|||||+++++|||+|++++||+|++|.++..|+||+|||||.|+.|.+++|+.+. +...+..+.+.
T Consensus 393 ~~vLvaT~~~~~GiDip~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~g~~i~~~~~~-e~~~~~~l~~~ 460 (563)
T 3i5x_A 393 SGILVCTDVGARGMDFPNVHEVLQIGVPSELANYIHRIGRTARSGKEGSSVLFICKD-ELPFVRELEDA 460 (563)
T ss_dssp SEEEEECGGGTSSCCCTTCCEEEEESCCSSTTHHHHHHTTSSCTTCCEEEEEEEEGG-GHHHHHHHHHH
T ss_pred CCEEEEcchhhcCCCcccCCEEEEECCCCchhhhhhhcCccccCCCCceEEEEEchh-HHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999987 45455544433
No 13
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=100.00 E-value=1.4e-56 Score=485.56 Aligned_cols=372 Identities=30% Similarity=0.479 Sum_probs=182.7
Q ss_pred eEeecCCCCCC---CCCCCCCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcC--CCEEEEecCCchHhHHHHHHHHHHH
Q 007814 131 IIVDGEDIPPP---IKNFKDMRFPEPILKKLKAKGIVQPTPIQVQGLPVVLSG--RDMIGIAFTGSGKTLVFVLPMIMIA 205 (588)
Q Consensus 131 i~v~g~~~p~p---~~~f~~~~l~~~l~~~l~~~g~~~p~~~Q~~~i~~il~g--~dvii~a~TGsGKTl~~~lp~l~~~ 205 (588)
+.+.+.+.+.| +.+|.+++|++.+++.|.++||..|+|+|.++|+.++.+ ++++++||||||||++|++|++..+
T Consensus 77 ~~~~~~~~~~~~~~~~~f~~~~l~~~l~~~l~~~g~~~p~~~Q~~ai~~il~~~~~~~l~~a~TGsGKT~~~~l~il~~l 156 (479)
T 3fmp_B 77 VEVLQRDPNSPLYSVKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQV 156 (479)
T ss_dssp EEEECSSTTSCCCCCCCSGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHTSBSCCEEEEECCSSSSHHHHHHHHHHTTC
T ss_pred ceecCCCCCCCccCcCCHHHcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCCcEEEEcCCCCchhHHHHHHHHHHH
Confidence 34445554444 678999999999999999999999999999999999987 9999999999999999999998765
Q ss_pred HhhcccCCCCCCCCCEEEEEcCCHHHHHHHHHHHHHHhhcccccCCCCceEEEEEcCcchHHHHHHHhcCCcEEEeChHH
Q 007814 206 MHEEMMMPIVPGEGPFCLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGR 285 (588)
Q Consensus 206 ~~~~~~~~~~~~~~~~~Lil~Ptr~La~Q~~~~~~~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~ 285 (588)
... ..++++|||+||++|+.|+++.+.++.... +++.+.+..++....... ..+++|+|+||++
T Consensus 157 ~~~--------~~~~~~lil~Pt~~La~Q~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~---~~~~~Ivv~Tp~~ 220 (479)
T 3fmp_B 157 EPA--------NKYPQCLCLSPTYELALQTGKVIEQMGKFY-----PELKLAYAVRGNKLERGQ---KISEQIVIGTPGT 220 (479)
T ss_dssp CTT--------SCSCCEEEECSSHHHHHHHHHHHHHHHTTS-----TTCCEEEESTTCCCCTTC---CCCCSEEEECHHH
T ss_pred hhc--------CCCCcEEEEeChHHHHHHHHHHHHHHHhhC-----CCceEEEEeCCccccccc---cCCCCEEEECchH
Confidence 331 346689999999999999999999987542 467788887775543221 2357999999999
Q ss_pred HHHHHHc-ccCCCCCcceeEecCcccccc-cCcHHHHHHHHHhhhhcceeEEEecccchHHHHHHHHhcCCCeEEEecCC
Q 007814 286 LKDMLAK-KKMNLDNCRYLTLDEADRLVD-LGFEDDIREVFDHFKAQRQTLLFSATMPTKIQNFARSALVKPVTVNVGRA 363 (588)
Q Consensus 286 L~~~l~~-~~~~l~~~~~lViDEah~l~~-~~~~~~i~~i~~~~~~~~q~l~~SAT~~~~i~~~~~~~l~~p~~i~~~~~ 363 (588)
|.+++.+ ..+.+.++++|||||||++.+ .+|...+..++..++..+|+++||||++..+..++..++.+|..+.+...
T Consensus 221 l~~~l~~~~~~~~~~~~~iViDEah~~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~i~~~~~ 300 (479)
T 3fmp_B 221 VLDWCSKLKFIDPKKIKVFVLDEADVMIATQGHQDQSIRIQRMLPRNCQMLLFSATFEDSVWKFAQKVVPDPNVIKLKRE 300 (479)
T ss_dssp HHHHHTTSCCCCGGGCCEEEECCHHHHHTSTTHHHHHHHHHTTSCTTSEEEEEESCCCHHHHHHHHHHSSSEEEEEEC--
T ss_pred HHHHHHhcCCcCcccCCEEEEECHHHHhhcCCcHHHHHHHHhhCCccceEEEEeCCCCHHHHHHHHHHcCCCeEEecccc
Confidence 9999866 456778999999999999997 68888899999999999999999999999999999999999988887766
Q ss_pred CCcccceEEEeeehhh-HHHHHHHHHHhhc-CCCCEEEEeCccccHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHh
Q 007814 364 GAANLDVIQEVEYVKQ-EAKIVYLLECLQK-TPPPVLIFCENKADVDDIHEYLLLKGVEAVAVHGGKDQEEREYAISSFK 441 (588)
Q Consensus 364 ~~~~~~~~~~~~~~~~-~~k~~~ll~~l~~-~~~~viIF~~s~~~~~~l~~~L~~~g~~~~~ihg~~~~~~R~~~~~~f~ 441 (588)
......+.+.+..... ..+...+...+.. ...++||||+++..++.+++.|...++.+..+||++++.+|..+++.|+
T Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lvF~~s~~~~~~l~~~L~~~~~~v~~lh~~~~~~~R~~~~~~f~ 380 (479)
T 3fmp_B 301 EETLDTIKQYYVLCSSRDEKFQALCNLYGAITIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFR 380 (479)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccCcCCceEEEEEeCCHHHHHHHHHHHHhhccCCceEEEeCcHHHHHHHHHHHHhCCccEEEecCCCCHHHHHHHHHHHH
Confidence 5555555555554443 3444455554443 3568999999999999999999999999999999999999999999999
Q ss_pred cCCcEEEEEcCccccCCCCCCcceEEecCCCC------ChhHHHHHhcccccCCCccEEEEEecCCCChhHHHHHHHHHH
Q 007814 442 AGKKDVLVATDVASKGLDFPDIQHVINYDMPA------EIENYVHRIGRTGRCGKTGIATTFINKNQSETTLLDLKHLLQ 515 (588)
Q Consensus 442 ~g~~~vLVaT~~~~~GlDip~v~~VI~~~~p~------s~~~y~qriGRagR~g~~g~~~~~~~~~~~~~~~~~l~~~l~ 515 (588)
+|+.+|||||+++++|+|+|++++||+||+|. +...|+||+|||||.|+.|.+++|+++..+...+..+.+.+.
T Consensus 381 ~g~~~iLv~T~~~~~GlDip~v~~VI~~d~p~~~~~~~s~~~~~Qr~GRagR~g~~G~~i~~~~~~~~~~~~~~i~~~~~ 460 (479)
T 3fmp_B 381 EGKEKVLVTTNVCARGIDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLAVNMVDSKHSMNILNRIQEHFN 460 (479)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cCCCcEEEEccccccCCccccCCEEEEecCCCCCccCCCHHHHHHHhcccccCCCCceEEEEEcCcchHHHHHHHHHHhC
Confidence 99999999999999999999999999999994 678999999999999999999999998766666666666654
Q ss_pred Hhc
Q 007814 516 EAK 518 (588)
Q Consensus 516 ~~~ 518 (588)
...
T Consensus 461 ~~~ 463 (479)
T 3fmp_B 461 KKI 463 (479)
T ss_dssp ---
T ss_pred CCc
Confidence 433
No 14
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=100.00 E-value=5e-52 Score=428.16 Aligned_cols=333 Identities=32% Similarity=0.543 Sum_probs=285.6
Q ss_pred CCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEEEEEcCCH
Q 007814 150 FPEPILKKLKAKGIVQPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFCLIVCPSR 229 (588)
Q Consensus 150 l~~~l~~~l~~~g~~~p~~~Q~~~i~~il~g~dvii~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~Lil~Ptr 229 (588)
|++.+.+.|.+.||..|+|+|.++++.+++|+++++++|||+|||++|++|++.. ++++||++|++
T Consensus 1 l~~~i~~~l~~~g~~~l~~~Q~~~i~~i~~~~~~lv~~~TGsGKT~~~~~~~~~~--------------~~~~liv~P~~ 66 (337)
T 2z0m_A 1 MNEKIEQAIREMGFKNFTEVQSKTIPLMLQGKNVVVRAKTGSGKTAAYAIPILEL--------------GMKSLVVTPTR 66 (337)
T ss_dssp CCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHH--------------TCCEEEECSSH
T ss_pred CCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCEEEEcCCCCcHHHHHHHHHHhh--------------cCCEEEEeCCH
Confidence 5789999999999999999999999999999999999999999999999998752 56799999999
Q ss_pred HHHHHHHHHHHHHhhcccccCCCCceEEEEEcCcchHHHHHHHhcCCcEEEeChHHHHHHHHcccCCCCCcceeEecCcc
Q 007814 230 ELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMNLDNCRYLTLDEAD 309 (588)
Q Consensus 230 ~La~Q~~~~~~~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~L~~~l~~~~~~l~~~~~lViDEah 309 (588)
+|+.|+++.+.+++... ++++..++|+.....+...+.. ++|+|+||++|.+.+......+.++++||+||||
T Consensus 67 ~L~~q~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~-~~i~v~T~~~l~~~~~~~~~~~~~~~~iViDEah 139 (337)
T 2z0m_A 67 ELTRQVASHIRDIGRYM------DTKVAEVYGGMPYKAQINRVRN-ADIVVATPGRLLDLWSKGVIDLSSFEIVIIDEAD 139 (337)
T ss_dssp HHHHHHHHHHHHHTTTS------CCCEEEECTTSCHHHHHHHHTT-CSEEEECHHHHHHHHHTTSCCGGGCSEEEEESHH
T ss_pred HHHHHHHHHHHHHhhhc------CCcEEEEECCcchHHHHhhcCC-CCEEEECHHHHHHHHHcCCcchhhCcEEEEEChH
Confidence 99999999999987644 7889999999888777666654 8999999999999988877788899999999999
Q ss_pred cccccCcHHHHHHHHHhhhhcceeEEEecccchHHHHHHHHhcCCCeEEEecCCCCcccceEEEeeehhhHHHHHHHHHH
Q 007814 310 RLVDLGFEDDIREVFDHFKAQRQTLLFSATMPTKIQNFARSALVKPVTVNVGRAGAANLDVIQEVEYVKQEAKIVYLLEC 389 (588)
Q Consensus 310 ~l~~~~~~~~i~~i~~~~~~~~q~l~~SAT~~~~i~~~~~~~l~~p~~i~~~~~~~~~~~~~~~~~~~~~~~k~~~ll~~ 389 (588)
++.+++|...+..++..++...+++++|||+++.+......++.++..+... ....++.+.+.......+ ..+..
T Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~~~~~SAT~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~--~~~~~ 214 (337)
T 2z0m_A 140 LMFEMGFIDDIKIILAQTSNRKITGLFSATIPEEIRKVVKDFITNYEEIEAC---IGLANVEHKFVHVKDDWR--SKVQA 214 (337)
T ss_dssp HHHHTTCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHSCSCEEEECS---GGGGGEEEEEEECSSSSH--HHHHH
T ss_pred HhhccccHHHHHHHHhhCCcccEEEEEeCcCCHHHHHHHHHhcCCceeeecc---cccCCceEEEEEeChHHH--HHHHH
Confidence 9999999999999999999999999999999999999999998887766432 222334444433332211 12233
Q ss_pred h-hcCCCCEEEEeCccccHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhcCCcEEEEEcCccccCCCCCCcceEEe
Q 007814 390 L-QKTPPPVLIFCENKADVDDIHEYLLLKGVEAVAVHGGKDQEEREYAISSFKAGKKDVLVATDVASKGLDFPDIQHVIN 468 (588)
Q Consensus 390 l-~~~~~~viIF~~s~~~~~~l~~~L~~~g~~~~~ihg~~~~~~R~~~~~~f~~g~~~vLVaT~~~~~GlDip~v~~VI~ 468 (588)
+ ...+.++||||+++..++.+++.|. .+..+||+++..+|..+++.|++|+.+|||||+++++|+|+|++++||+
T Consensus 215 ~~~~~~~~~lvf~~~~~~~~~l~~~l~----~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gid~~~~~~Vi~ 290 (337)
T 2z0m_A 215 LRENKDKGVIVFVRTRNRVAKLVRLFD----NAIELRGDLPQSVRNRNIDAFREGEYDMLITTDVASRGLDIPLVEKVIN 290 (337)
T ss_dssp HHTCCCSSEEEECSCHHHHHHHHTTCT----TEEEECTTSCHHHHHHHHHHHHTTSCSEEEECHHHHTTCCCCCBSEEEE
T ss_pred HHhCCCCcEEEEEcCHHHHHHHHHHhh----hhhhhcCCCCHHHHHHHHHHHHcCCCcEEEEcCccccCCCccCCCEEEE
Confidence 3 3456799999999999999999886 6889999999999999999999999999999999999999999999999
Q ss_pred cCCCCChhHHHHHhcccccCCCccEEEEEecCCCChhHHHHHHHHH
Q 007814 469 YDMPAEIENYVHRIGRTGRCGKTGIATTFINKNQSETTLLDLKHLL 514 (588)
Q Consensus 469 ~~~p~s~~~y~qriGRagR~g~~g~~~~~~~~~~~~~~~~~l~~~l 514 (588)
|++|+|+..|+||+||+||.|+.|.+++|+. . +...+..+.+.+
T Consensus 291 ~~~~~s~~~~~Q~~GR~gR~g~~g~~~~~~~-~-~~~~~~~i~~~~ 334 (337)
T 2z0m_A 291 FDAPQDLRTYIHRIGRTGRMGRKGEAITFIL-N-EYWLEKEVKKVS 334 (337)
T ss_dssp SSCCSSHHHHHHHHTTBCGGGCCEEEEEEES-S-CHHHHHHHC---
T ss_pred ecCCCCHHHhhHhcCccccCCCCceEEEEEe-C-cHHHHHHHHHHh
Confidence 9999999999999999999999999999999 4 555666655544
No 15
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=100.00 E-value=2.2e-52 Score=459.77 Aligned_cols=331 Identities=20% Similarity=0.317 Sum_probs=275.9
Q ss_pred CCCCCCCHHHHHHHHHC-CCCCCcHHHHHHHHHHhcCCCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEEE
Q 007814 145 FKDMRFPEPILKKLKAK-GIVQPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFCL 223 (588)
Q Consensus 145 f~~~~l~~~l~~~l~~~-g~~~p~~~Q~~~i~~il~g~dvii~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~L 223 (588)
+.++++++.+.+.|++. ||..|+|+|.++|+.+++|+|+++++|||+|||++|++|++. ..+++|
T Consensus 23 ~~~~~l~~~l~~~L~~~fg~~~~rp~Q~~~i~~il~g~d~lv~~pTGsGKTl~~~lpal~--------------~~g~~l 88 (591)
T 2v1x_A 23 KEDFPWSGKVKDILQNVFKLEKFRPLQLETINVTMAGKEVFLVMPTGGGKSLCYQLPALC--------------SDGFTL 88 (591)
T ss_dssp CSCSTTHHHHHHHHHHTSCCCSCCTTHHHHHHHHHTTCCEEEECCTTSCTTHHHHHHHHT--------------SSSEEE
T ss_pred cccCCCCHHHHHHHHHHhCCCCCCHHHHHHHHHHHcCCCEEEEECCCChHHHHHHHHHHH--------------cCCcEE
Confidence 44678999999999995 999999999999999999999999999999999999999984 245899
Q ss_pred EEcCCHHHHHHHHHHHHHHhhcccccCCCCceEEEEEcCcchHHHHHHH------hcCCcEEEeChHHHH------HHHH
Q 007814 224 IVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVV------KRGVHIVVATPGRLK------DMLA 291 (588)
Q Consensus 224 il~Ptr~La~Q~~~~~~~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l------~~~~~IvV~Tp~~L~------~~l~ 291 (588)
||+|+++|+.|+.+.+.++ ++++..+.|+.+..+....+ ..+++|+|+||++|. +.+.
T Consensus 89 VisP~~~L~~q~~~~l~~~----------gi~~~~l~~~~~~~~~~~~~~~l~~~~~~~~Ilv~Tpe~L~~~~~~~~~l~ 158 (591)
T 2v1x_A 89 VICPLISLMEDQLMVLKQL----------GISATMLNASSSKEHVKWVHAEMVNKNSELKLIYVTPEKIAKSKMFMSRLE 158 (591)
T ss_dssp EECSCHHHHHHHHHHHHHH----------TCCEEECCSSCCHHHHHHHHHHHHCTTCCCCEEEECHHHHHSCHHHHHHHH
T ss_pred EEeCHHHHHHHHHHHHHhc----------CCcEEEEeCCCCHHHHHHHHHHhhcccCCCCEEEEChhHhhccHHHHHHHH
Confidence 9999999999999999987 67888899887766543322 346899999999874 2222
Q ss_pred cccCCCCCcceeEecCcccccccC--cHHHHHH--HHHhhhhcceeEEEecccchHHHHHHHHhcCCCeEEEecCCCCcc
Q 007814 292 KKKMNLDNCRYLTLDEADRLVDLG--FEDDIRE--VFDHFKAQRQTLLFSATMPTKIQNFARSALVKPVTVNVGRAGAAN 367 (588)
Q Consensus 292 ~~~~~l~~~~~lViDEah~l~~~~--~~~~i~~--i~~~~~~~~q~l~~SAT~~~~i~~~~~~~l~~p~~i~~~~~~~~~ 367 (588)
....+..+++|||||||++.+|| |...+.. ++....+..++++||||+++.+...+...+..+..+.+.. ....
T Consensus 159 -~~~~~~~i~~iViDEAH~is~~g~dfr~~~~~l~~l~~~~~~~~ii~lSAT~~~~v~~~i~~~l~~~~~~~~~~-~~~r 236 (591)
T 2v1x_A 159 -KAYEARRFTRIAVDEVHCCSQWGHDFRPDYKALGILKRQFPNASLIGLTATATNHVLTDAQKILCIEKCFTFTA-SFNR 236 (591)
T ss_dssp -HHHHTTCEEEEEEETGGGGSTTCTTCCGGGGGGGHHHHHCTTSEEEEEESSCCHHHHHHHHHHTTCCSCEEEEC-CCCC
T ss_pred -hhhhccCCcEEEEECcccccccccccHHHHHHHHHHHHhCCCCcEEEEecCCCHHHHHHHHHHhCCCCcEEEec-CCCC
Confidence 24457789999999999999998 7666654 3444445789999999999998888877776543222221 1223
Q ss_pred cceEEEeeeh--hhHHHHHHHHHHhhc--CCCCEEEEeCccccHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhcC
Q 007814 368 LDVIQEVEYV--KQEAKIVYLLECLQK--TPPPVLIFCENKADVDDIHEYLLLKGVEAVAVHGGKDQEEREYAISSFKAG 443 (588)
Q Consensus 368 ~~~~~~~~~~--~~~~k~~~ll~~l~~--~~~~viIF~~s~~~~~~l~~~L~~~g~~~~~ihg~~~~~~R~~~~~~f~~g 443 (588)
.++...+... ....++..++..+.. .+.++||||+++..++.+++.|...|+.+..+||+|++.+|..+++.|++|
T Consensus 237 ~nl~~~v~~~~~~~~~~~~~l~~~l~~~~~~~~~IVf~~sr~~~e~la~~L~~~g~~~~~~h~~l~~~~R~~~~~~F~~g 316 (591)
T 2v1x_A 237 PNLYYEVRQKPSNTEDFIEDIVKLINGRYKGQSGIIYCFSQKDSEQVTVSLQNLGIHAGAYHANLEPEDKTTVHRKWSAN 316 (591)
T ss_dssp TTEEEEEEECCSSHHHHHHHHHHHHTTTTTTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTT
T ss_pred cccEEEEEeCCCcHHHHHHHHHHHHHHhccCCCeEEEeCcHHHHHHHHHHHHHCCCCEEEecCCCCHHHHHHHHHHHHcC
Confidence 3444444332 234566777777764 467899999999999999999999999999999999999999999999999
Q ss_pred CcEEEEEcCccccCCCCCCcceEEecCCCCChhHHHHHhcccccCCCccEEEEEecCC
Q 007814 444 KKDVLVATDVASKGLDFPDIQHVINYDMPAEIENYVHRIGRTGRCGKTGIATTFINKN 501 (588)
Q Consensus 444 ~~~vLVaT~~~~~GlDip~v~~VI~~~~p~s~~~y~qriGRagR~g~~g~~~~~~~~~ 501 (588)
+.+|||||+++++|||+|+|++||+|++|.|++.|+||+|||||.|+.|.|++|++..
T Consensus 317 ~~~VlVAT~a~~~GID~p~V~~VI~~~~p~s~~~y~Qr~GRaGR~G~~g~~i~l~~~~ 374 (591)
T 2v1x_A 317 EIQVVVATVAFGMGIDKPDVRFVIHHSMSKSMENYYQESGRAGRDDMKADCILYYGFG 374 (591)
T ss_dssp SSSEEEECTTSCTTCCCSCEEEEEESSCCSSHHHHHHHHTTSCTTSSCEEEEEEECHH
T ss_pred CCeEEEEechhhcCCCcccccEEEEeCCCCCHHHHHHHhccCCcCCCCceEEEEEChH
Confidence 9999999999999999999999999999999999999999999999999999999765
No 16
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=100.00 E-value=1.5e-50 Score=440.75 Aligned_cols=330 Identities=22% Similarity=0.328 Sum_probs=269.8
Q ss_pred CCCCCCCCCCHHHHHHHHH-CCCCCCcHHHHHHHHHHhcCCCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCC
Q 007814 142 IKNFKDMRFPEPILKKLKA-KGIVQPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGP 220 (588)
Q Consensus 142 ~~~f~~~~l~~~l~~~l~~-~g~~~p~~~Q~~~i~~il~g~dvii~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~ 220 (588)
+.+|+++++++.+.+.|++ .||..|+|+|.++|+.+++|+|+++++|||+|||++|++|++.. .+
T Consensus 1 ~~~fe~l~L~~~~~~~l~~~~g~~~~r~~Q~~~i~~il~g~d~lv~apTGsGKTl~~~lp~l~~--------------~g 66 (523)
T 1oyw_A 1 MAQAEVLNLESGAKQVLQETFGYQQFRPGQEEIIDTVLSGRDCLVVMPTGGGKSLCYQIPALLL--------------NG 66 (523)
T ss_dssp CCCCCCSSHHHHHHHHHHHTTCCSSCCTTHHHHHHHHHTTCCEEEECSCHHHHHHHHHHHHHHS--------------SS
T ss_pred CCChhhCCCCHHHHHHHHHHhCCCCCCHHHHHHHHHHHcCCCEEEECCCCcHHHHHHHHHHHHh--------------CC
Confidence 3579999999999999999 59999999999999999999999999999999999999999842 35
Q ss_pred EEEEEcCCHHHHHHHHHHHHHHhhcccccCCCCceEEEEEcCcchHHHHH---HH-hcCCcEEEeChHHHHHHHHcccCC
Q 007814 221 FCLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLE---VV-KRGVHIVVATPGRLKDMLAKKKMN 296 (588)
Q Consensus 221 ~~Lil~Ptr~La~Q~~~~~~~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~---~l-~~~~~IvV~Tp~~L~~~l~~~~~~ 296 (588)
.+|||+|+++|+.|+.+.+..+ ++.+..+.|+........ .+ ...++|+|+||++|........+.
T Consensus 67 ~~lvi~P~~aL~~q~~~~l~~~----------gi~~~~l~~~~~~~~~~~~~~~~~~~~~~ilv~Tpe~l~~~~~~~~l~ 136 (523)
T 1oyw_A 67 LTVVVSPLISLMKDQVDQLQAN----------GVAAACLNSTQTREQQLEVMTGCRTGQIRLLYIAPERLMLDNFLEHLA 136 (523)
T ss_dssp EEEEECSCHHHHHHHHHHHHHT----------TCCEEEECTTSCHHHHHHHHHHHHHTCCSEEEECHHHHTSTTHHHHHT
T ss_pred CEEEECChHHHHHHHHHHHHHc----------CCcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhChHHHHHHh
Confidence 7999999999999999999886 678888888876554432 22 345899999999995332223344
Q ss_pred CCCcceeEecCcccccccC--cHHHHHHH---HHhhhhcceeEEEecccchHHHHHHHHhc--CCCeEEEecCCCCcccc
Q 007814 297 LDNCRYLTLDEADRLVDLG--FEDDIREV---FDHFKAQRQTLLFSATMPTKIQNFARSAL--VKPVTVNVGRAGAANLD 369 (588)
Q Consensus 297 l~~~~~lViDEah~l~~~~--~~~~i~~i---~~~~~~~~q~l~~SAT~~~~i~~~~~~~l--~~p~~i~~~~~~~~~~~ 369 (588)
..++++|||||||++.+|| |...+..+ ...+ +..+++++|||+++.+...+...+ ..+..+ .... ...+
T Consensus 137 ~~~~~~vViDEaH~i~~~g~~fr~~~~~l~~l~~~~-~~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~-~~~~--~r~~ 212 (523)
T 1oyw_A 137 HWNPVLLAVDEAHCISQWGHDFRPEYAALGQLRQRF-PTLPFMALTATADDTTRQDIVRLLGLNDPLIQ-ISSF--DRPN 212 (523)
T ss_dssp TSCEEEEEESSGGGGCTTSSCCCHHHHGGGGHHHHC-TTSCEEEEESCCCHHHHHHHHHHHTCCSCEEE-ECCC--CCTT
T ss_pred hCCCCEEEEeCccccCcCCCccHHHHHHHHHHHHhC-CCCCEEEEeCCCCHHHHHHHHHHhCCCCCeEE-eCCC--CCCc
Confidence 5789999999999999998 65555443 3333 357899999999998765444433 344433 3222 2233
Q ss_pred eEEEeeehhhHHHHHHHHHHhhc-CCCCEEEEeCccccHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhcCCcEEE
Q 007814 370 VIQEVEYVKQEAKIVYLLECLQK-TPPPVLIFCENKADVDDIHEYLLLKGVEAVAVHGGKDQEEREYAISSFKAGKKDVL 448 (588)
Q Consensus 370 ~~~~~~~~~~~~k~~~ll~~l~~-~~~~viIF~~s~~~~~~l~~~L~~~g~~~~~ihg~~~~~~R~~~~~~f~~g~~~vL 448 (588)
+...+. ....+...++..+.. .+.++||||+++..++.+++.|...|+.+..+||++++.+|..+++.|++|+.+||
T Consensus 213 l~~~v~--~~~~~~~~l~~~l~~~~~~~~IVf~~sr~~~e~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~vl 290 (523)
T 1oyw_A 213 IRYMLM--EKFKPLDQLMRYVQEQRGKSGIIYCNSRAKVEDTAARLQSKGISAAAYHAGLENNVRADVQEKFQRDDLQIV 290 (523)
T ss_dssp EEEEEE--ECSSHHHHHHHHHHHTTTCCEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSCSEE
T ss_pred eEEEEE--eCCCHHHHHHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHHCCCCEEEecCCCCHHHHHHHHHHHHcCCCeEE
Confidence 333332 223445556666654 45699999999999999999999999999999999999999999999999999999
Q ss_pred EEcCccccCCCCCCcceEEecCCCCChhHHHHHhcccccCCCccEEEEEecCC
Q 007814 449 VATDVASKGLDFPDIQHVINYDMPAEIENYVHRIGRTGRCGKTGIATTFINKN 501 (588)
Q Consensus 449 VaT~~~~~GlDip~v~~VI~~~~p~s~~~y~qriGRagR~g~~g~~~~~~~~~ 501 (588)
|||+++++|||+|++++||+|++|.|++.|+||+|||||.|+.|.+++|+++.
T Consensus 291 VaT~a~~~GiD~p~v~~VI~~~~p~s~~~y~Qr~GRaGR~g~~~~~~l~~~~~ 343 (523)
T 1oyw_A 291 VATVAFGMGINKPNVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAMLFYDPA 343 (523)
T ss_dssp EECTTSCTTTCCTTCCEEEESSCCSSHHHHHHHHTTSCTTSSCEEEEEEECHH
T ss_pred EEechhhCCCCccCccEEEEECCCCCHHHHHHHhccccCCCCCceEEEEeCHH
Confidence 99999999999999999999999999999999999999999999999999765
No 17
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1.5e-52 Score=456.17 Aligned_cols=384 Identities=26% Similarity=0.431 Sum_probs=259.9
Q ss_pred HHHHHHHhcCeE-eecCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcC--CCEEEEecCCchHhHHH
Q 007814 121 ACDLIRKQWHII-VDGEDIPPPIKNFKDMRFPEPILKKLKAKGIVQPTPIQVQGLPVVLSG--RDMIGIAFTGSGKTLVF 197 (588)
Q Consensus 121 ~~~~~r~~~~i~-v~g~~~p~p~~~f~~~~l~~~l~~~l~~~g~~~p~~~Q~~~i~~il~g--~dvii~a~TGsGKTl~~ 197 (588)
+...+...+++. +.....|.++..|...++++.+.+.+.+.|+..|+++|.++|+.++++ ++++++||||||||++|
T Consensus 96 ~~~~~~~~~~~~~~~~~~~p~~l~~~~~~~l~~~~~~~l~~~g~~~p~~~Q~~ai~~i~~~~~~~~ll~apTGsGKT~~~ 175 (508)
T 3fho_A 96 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKIQEKALPLLLSNPPRNMIGQSQSGTGKTAAF 175 (508)
T ss_dssp -------------------------------------------CEECCCTTSSSHHHHHCSSCCCEEEECCSSTTSHHHH
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccCcHHHHHHHHHHHHcCCCCCEEEECCCCccHHHHH
Confidence 333444444432 233334556677788889999999999999999999999999999988 99999999999999999
Q ss_pred HHHHHHHHHhhcccCCCCCCCCCEEEEEcCCHHHHHHHHHHHHHHhhcccccCCCCceEEEEEcCcchHHHHHHHhcCCc
Q 007814 198 VLPMIMIAMHEEMMMPIVPGEGPFCLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVH 277 (588)
Q Consensus 198 ~lp~l~~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Q~~~~~~~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~~~~~ 277 (588)
++|++..+... ..++++|||+|+++|+.|+++.+.+++... .+.+....++..... ...+++
T Consensus 176 ~~~il~~l~~~--------~~~~~vLvl~P~~~L~~Q~~~~~~~~~~~~------~~~~~~~~~~~~~~~----~~~~~~ 237 (508)
T 3fho_A 176 ALTMLSRVDAS--------VPKPQAICLAPSRELARQIMDVVTEMGKYT------EVKTAFGIKDSVPKG----AKIDAQ 237 (508)
T ss_dssp HHHHHHHSCTT--------CCSCCEEEECSCHHHHHHHHHHHHHHSTTS------SCCEEC--------------CCCCS
T ss_pred HHHHHHHHHhC--------CCCceEEEEECcHHHHHHHHHHHHHhCCcc------CeeEEEEeCCccccc----ccCCCC
Confidence 99999876432 346789999999999999999999997543 455555555433222 233689
Q ss_pred EEEeChHHHHHHHHcccCCCCCcceeEecCcccccc-cCcHHHHHHHHHhhhhcceeEEEecccchHHHHHHHHhcCCCe
Q 007814 278 IVVATPGRLKDMLAKKKMNLDNCRYLTLDEADRLVD-LGFEDDIREVFDHFKAQRQTLLFSATMPTKIQNFARSALVKPV 356 (588)
Q Consensus 278 IvV~Tp~~L~~~l~~~~~~l~~~~~lViDEah~l~~-~~~~~~i~~i~~~~~~~~q~l~~SAT~~~~i~~~~~~~l~~p~ 356 (588)
|+|+||++|.+.+......+..+++|||||||++.+ .++...+..++..++...|++++|||+++.+..+...++.++.
T Consensus 238 Ivv~T~~~l~~~l~~~~~~~~~~~lIIiDEaH~~~~~~~~~~~~~~i~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~ 317 (508)
T 3fho_A 238 IVIGTPGTVMDLMKRRQLDARDIKVFVLDEADNMLDQQGLGDQSMRIKHLLPRNTQIVLFSATFSERVEKYAERFAPNAN 317 (508)
T ss_dssp EEEECHHHHHHHHHTTCSCCTTCCEEEECCHHHHTTC--CHHHHHHHHHHSCTTCEEEEEESCCSTHHHHHHHHHSTTCE
T ss_pred EEEECHHHHHHHHHcCCccccCCCEEEEechhhhcccCCcHHHHHHHHHhCCcCCeEEEEeCCCCHHHHHHHHHhcCCCe
Confidence 999999999999988888899999999999999988 6898999999999999999999999999999999999999888
Q ss_pred EEEecCCCCcccceEEEeeeh-hhHHHHHHHHHHhhc-CCCCEEEEeCccccHHHHHHHHHHcCCcEEEEeCCCCHHHHH
Q 007814 357 TVNVGRAGAANLDVIQEVEYV-KQEAKIVYLLECLQK-TPPPVLIFCENKADVDDIHEYLLLKGVEAVAVHGGKDQEERE 434 (588)
Q Consensus 357 ~i~~~~~~~~~~~~~~~~~~~-~~~~k~~~ll~~l~~-~~~~viIF~~s~~~~~~l~~~L~~~g~~~~~ihg~~~~~~R~ 434 (588)
.+...........+.+.+... ....+...+...+.. ..+++||||+++..++.++..|...++.+..+||++++.+|.
T Consensus 318 ~i~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~ll~~~~~~~~LVF~~s~~~a~~l~~~L~~~~~~v~~~hg~~~~~~R~ 397 (508)
T 3fho_A 318 EIRLKTEELSVEGIKQLYMDCQSEEHKYNVLVELYGLLTIGQSIIFCKKKDTAEEIARRMTADGHTVACLTGNLEGAQRD 397 (508)
T ss_dssp EECCCCCC----CCCCEEEEC--CHHHHHHHHHHHC---CCCEEEBCSSTTTTTHHHHHHTTTTCCCCEEC-----CTTG
T ss_pred EEEeccccCCcccceEEEEECCchHHHHHHHHHHHHhcCCCcEEEEECCHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHH
Confidence 776655544444444444433 334455555555544 457999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCcEEEEEcCccccCCCCCCcceEEecCCC------CChhHHHHHhcccccCCCccEEEEEecCCCChhHHH
Q 007814 435 YAISSFKAGKKDVLVATDVASKGLDFPDIQHVINYDMP------AEIENYVHRIGRTGRCGKTGIATTFINKNQSETTLL 508 (588)
Q Consensus 435 ~~~~~f~~g~~~vLVaT~~~~~GlDip~v~~VI~~~~p------~s~~~y~qriGRagR~g~~g~~~~~~~~~~~~~~~~ 508 (588)
.+++.|++|+.+|||||+++++|+|+|++++||++++| .++..|+||+||+||.|+.|.+++|+....+...+.
T Consensus 398 ~il~~f~~g~~~VLVaT~~l~~GiDip~v~~VI~~~~p~~~~~~~s~~~~~Qr~GRagR~g~~g~~i~l~~~~~~~~~~~ 477 (508)
T 3fho_A 398 AIMDSFRVGTSKVLVTTNVIARGIDVSQVNLVVNYDMPLDQAGRPDPQTYLHRIGRTGRFGRVGVSINFVHDKKSWEEMN 477 (508)
T ss_dssp GGTHHHHSSSCCCCEECC-----CCCTTCCEEEC----CC-----CTHHHHHTTSCCC-----CEEEEEECTTTSSSSHH
T ss_pred HHHHHHHCCCCeEEEeCChhhcCCCccCCCEEEEECCCCcccCCCCHHHHHHHhhhcCCCCCCcEEEEEEeChHHHHHHH
Confidence 99999999999999999999999999999999999999 789999999999999999999999999776666677
Q ss_pred HHHHHHHHhcccCc
Q 007814 509 DLKHLLQEAKQRIP 522 (588)
Q Consensus 509 ~l~~~l~~~~~~~p 522 (588)
.+.+.+......+|
T Consensus 478 ~i~~~~~~~i~~l~ 491 (508)
T 3fho_A 478 AIQEYFQRPITRVP 491 (508)
T ss_dssp HHHHHSCCCCC---
T ss_pred HHHHHHCCCcccCC
Confidence 77666554444444
No 18
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=100.00 E-value=3e-50 Score=427.74 Aligned_cols=326 Identities=22% Similarity=0.336 Sum_probs=265.7
Q ss_pred HHHHHHHHC-CCCCCcHHHHHHHHHHhcCCCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEEEEEcCCHHH
Q 007814 153 PILKKLKAK-GIVQPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFCLIVCPSREL 231 (588)
Q Consensus 153 ~l~~~l~~~-g~~~p~~~Q~~~i~~il~g~dvii~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~Lil~Ptr~L 231 (588)
.+.+.+++. |+ +|+|+|.++++.+++|+|++++||||||||++|++|++..+ ..++++|||+||++|
T Consensus 9 ~~~~~l~~~~~~-~~~~~Q~~~i~~i~~~~~~lv~apTGsGKT~~~l~~~~~~~-----------~~~~~~lil~Pt~~L 76 (414)
T 3oiy_A 9 DFRSFFKKKFGK-DLTGYQRLWAKRIVQGKSFTMVAPTGVGKTTFGMMTALWLA-----------RKGKKSALVFPTVTL 76 (414)
T ss_dssp HHHHHHHHHHSS-CCCHHHHHHHHHHTTTCCEECCSCSSSSHHHHHHHHHHHHH-----------TTTCCEEEEESSHHH
T ss_pred HHHHHHHHhcCC-CCCHHHHHHHHHHhcCCCEEEEeCCCCCHHHHHHHHHHHHh-----------cCCCEEEEEECCHHH
Confidence 445566665 55 79999999999999999999999999999999999988754 257899999999999
Q ss_pred HHHHHHHHHHHhhcccccCCCCceEEEEEcCcch---HHHHHHHhcC-CcEEEeChHHHHHHHHcccCCCCCcceeEecC
Q 007814 232 ARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDM---RSQLEVVKRG-VHIVVATPGRLKDMLAKKKMNLDNCRYLTLDE 307 (588)
Q Consensus 232 a~Q~~~~~~~~~~~~~~~~~~~i~~~~~~gg~~~---~~~~~~l~~~-~~IvV~Tp~~L~~~l~~~~~~l~~~~~lViDE 307 (588)
|.|+++.+.+++. . ++++..++|+.+. ..+...+..+ ++|+|+||++|.+++.. +.+.++++||+||
T Consensus 77 ~~q~~~~~~~~~~-~------~~~v~~~~g~~~~~~~~~~~~~l~~~~~~Iiv~Tp~~l~~~l~~--~~~~~~~~iViDE 147 (414)
T 3oiy_A 77 VKQTLERLQKLAD-E------KVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREK--LSQKRFDFVFVDD 147 (414)
T ss_dssp HHHHHHHHHHHCC-S------SCCEEECCTTSCHHHHHHHHHHHHHTCCSEEEEEHHHHHHCHHH--HTTCCCSEEEESC
T ss_pred HHHHHHHHHHHcc-C------CceEEEEECCCChhhHHHHHHHhhcCCCCEEEECHHHHHHHHHH--hccccccEEEEeC
Confidence 9999999999865 3 7899999999988 5566677666 99999999999888764 6677999999999
Q ss_pred cccccc-----------cCcHHH-HHHHHHhhh-----------hcceeEEEecc-cchHHH-HHHHHhcCCCeEEEecC
Q 007814 308 ADRLVD-----------LGFEDD-IREVFDHFK-----------AQRQTLLFSAT-MPTKIQ-NFARSALVKPVTVNVGR 362 (588)
Q Consensus 308 ah~l~~-----------~~~~~~-i~~i~~~~~-----------~~~q~l~~SAT-~~~~i~-~~~~~~l~~p~~i~~~~ 362 (588)
||++.+ ++|... +..++..++ ..+|+++|||| +|..+. .+....+. +.+..
T Consensus 148 aH~~~~~~~~~d~~l~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~----~~~~~ 223 (414)
T 3oiy_A 148 VDAVLKASRNIDTLLMMVGIPEEIIRKAFSTIKQGKIYERPKNLKPGILVVSSATAKPRGIRPLLFRDLLN----FTVGR 223 (414)
T ss_dssp HHHHHHCHHHHHHHHHHTTCCHHHHHHHHHHHHHTCCCCCCTTCCCCEEEESSCCSSCCSSTTHHHHHHHS----CCSSC
T ss_pred hHhhhhccchhhhHHhhcCCcHHHHHHHHHhcccchhhhhcccCCCceEEEEecCCCcchhHHHHHHHhhc----cCcCc
Confidence 987654 778788 888998887 88999999999 565544 23333332 22223
Q ss_pred CCCcccceEEEeeehhhHHHHHHHHHHhhcCCCCEEEEeCccccHHHHHHHHHHcCCcEE-EEeCCCCHHHHHHHHHHHh
Q 007814 363 AGAANLDVIQEVEYVKQEAKIVYLLECLQKTPPPVLIFCENKADVDDIHEYLLLKGVEAV-AVHGGKDQEEREYAISSFK 441 (588)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~k~~~ll~~l~~~~~~viIF~~s~~~~~~l~~~L~~~g~~~~-~ihg~~~~~~R~~~~~~f~ 441 (588)
......++.+.+........+ ...+...+.++||||+++..++.+++.|...|+.+. .+||. +|. ++.|+
T Consensus 224 ~~~~~~~i~~~~~~~~~~~~l---~~~l~~~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~h~~----~r~--~~~f~ 294 (414)
T 3oiy_A 224 LVSVARNITHVRISSRSKEKL---VELLEIFRDGILIFAQTEEEGKELYEYLKRFKFNVGETWSEF----EKN--FEDFK 294 (414)
T ss_dssp CCCCCCSEEEEEESSCCHHHH---HHHHHHHCSSEEEEESSHHHHHHHHHHHHHTTCCEEESSSCH----HHH--HHHHH
T ss_pred cccccccchheeeccCHHHHH---HHHHHHcCCCEEEEECCHHHHHHHHHHHHHcCCceehhhcCc----chH--HHHHh
Confidence 333444555655555444444 444444558999999999999999999999999998 89984 444 99999
Q ss_pred cCCcEEEEE----cCccccCCCCCC-cceEEecCCC--CChhHHHHHhcccccCC----CccEEEEEecCCCChhHHHHH
Q 007814 442 AGKKDVLVA----TDVASKGLDFPD-IQHVINYDMP--AEIENYVHRIGRTGRCG----KTGIATTFINKNQSETTLLDL 510 (588)
Q Consensus 442 ~g~~~vLVa----T~~~~~GlDip~-v~~VI~~~~p--~s~~~y~qriGRagR~g----~~g~~~~~~~~~~~~~~~~~l 510 (588)
+|+.+|||| |+++++|+|+|+ +++||+||+| .++..|+||+|||||.| +.|.+++|+ .+...+..+
T Consensus 295 ~g~~~vLvat~s~T~~~~~GiDip~~v~~VI~~~~p~~~~~~~y~qr~GR~gR~g~~~~~~g~~i~~~---~~~~~~~~l 371 (414)
T 3oiy_A 295 VGKINILIGVQAYYGKLTRGVDLPERIKYVIFWGTPSGPDVYTYIQASGRSSRILNGVLVKGVSVIFE---EDEEIFESL 371 (414)
T ss_dssp TTSCSEEEEECCTTCCCCCCCCCTTTCCEEEEESCCTTTCHHHHHHHHGGGCCEETTEECCEEEEEEC---CCHHHHHHH
T ss_pred CCCCeEEEEecCcCchhhccCccccccCEEEEECCCCCCCHHHHHHHhCccccCCCCCCcceEEEEEE---ccHHHHHHH
Confidence 999999999 999999999999 9999999999 99999999999999987 589999999 256667777
Q ss_pred HHHHH
Q 007814 511 KHLLQ 515 (588)
Q Consensus 511 ~~~l~ 515 (588)
.+.+.
T Consensus 372 ~~~~~ 376 (414)
T 3oiy_A 372 KTRLL 376 (414)
T ss_dssp HHHHH
T ss_pred HHHhc
Confidence 77666
No 19
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A
Probab=100.00 E-value=2.7e-48 Score=427.68 Aligned_cols=355 Identities=21% Similarity=0.249 Sum_probs=272.3
Q ss_pred ccccCCHHHHHHHHHhcCeEe-ecCCCCCCCCCCCCCCCCHHHHHHHH--------HCCCCCCcHHHHHHHHHHhcCCCE
Q 007814 113 PIRRMSKKACDLIRKQWHIIV-DGEDIPPPIKNFKDMRFPEPILKKLK--------AKGIVQPTPIQVQGLPVVLSGRDM 183 (588)
Q Consensus 113 ~~~~~~~~~~~~~r~~~~i~v-~g~~~p~p~~~f~~~~l~~~l~~~l~--------~~g~~~p~~~Q~~~i~~il~g~dv 183 (588)
.+..||++++......+...+ +|+. +.+.+.+++. ..|| .|||+|..++|.++.|+
T Consensus 35 ~~~~lsd~el~~~t~~~~~~~~~g~~------------ld~~l~ea~a~vrea~~r~lG~-~pt~VQ~~~ip~ll~G~-- 99 (844)
T 1tf5_A 35 DYENLSDDALKHKTIEFKERLEKGAT------------TDDLLVEAFAVVREASRRVTGM-FPFKVQLMGGVALHDGN-- 99 (844)
T ss_dssp HHHTCCHHHHHHHHHHHHHHHHTTCC------------HHHHHHHHHHHHHHHHHHHHSC-CCCHHHHHHHHHHHTTS--
T ss_pred HHHhCCHHHHHHHHHHHHHHHhcCCC------------hHHHHHHHHHHHHHHHHHHcCC-CCcHHHHHhhHHHhCCC--
Confidence 456778888766655554332 3322 2222333332 4699 99999999999999999
Q ss_pred EEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEEEEEcCCHHHHHHHHHHHHHHhhcccccCCCCceEEEEEcCc
Q 007814 184 IGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFCLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGV 263 (588)
Q Consensus 184 ii~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Q~~~~~~~~~~~~~~~~~~~i~~~~~~gg~ 263 (588)
|+.|+||+|||++|.+|++...+ .|+.++||+||++||.|.++.+..++..+ ++++.+++||.
T Consensus 100 Iaea~TGeGKTlaf~LP~~l~aL-----------~g~~vlVltptreLA~qd~e~~~~l~~~l------gl~v~~i~gg~ 162 (844)
T 1tf5_A 100 IAEMKTGEGKTLTSTLPVYLNAL-----------TGKGVHVVTVNEYLASRDAEQMGKIFEFL------GLTVGLNLNSM 162 (844)
T ss_dssp EEECCTTSCHHHHHHHHHHHHHT-----------TSSCEEEEESSHHHHHHHHHHHHHHHHHT------TCCEEECCTTS
T ss_pred EEEccCCcHHHHHHHHHHHHHHH-----------cCCCEEEEeCCHHHHHHHHHHHHHHHhhc------CCeEEEEeCCC
Confidence 99999999999999999985442 35679999999999999999999998876 89999999998
Q ss_pred chHHHHHHHhcCCcEEEeChHHH-HHHHHcc------cCCCCCcceeEecCccccc-ccC---------------cHHHH
Q 007814 264 DMRSQLEVVKRGVHIVVATPGRL-KDMLAKK------KMNLDNCRYLTLDEADRLV-DLG---------------FEDDI 320 (588)
Q Consensus 264 ~~~~~~~~l~~~~~IvV~Tp~~L-~~~l~~~------~~~l~~~~~lViDEah~l~-~~~---------------~~~~i 320 (588)
+...+. ...+++|+|+||++| .|+|..+ .+.++.+.++||||||+|+ +++ |...+
T Consensus 163 ~~~~r~--~~~~~dIv~gTpgrlgfD~L~D~m~~~~~~l~lr~~~~lVlDEaD~mLiDea~tplIisg~~~~~~~~~~~i 240 (844)
T 1tf5_A 163 SKDEKR--EAYAADITYSTNNELGFDYLRDNMVLYKEQMVQRPLHFAVIDEVDSILIDEARTPLIISGQAAKSTKLYVQA 240 (844)
T ss_dssp CHHHHH--HHHHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCCCCEEEEETHHHHHTTTTTCEEEEEEEEECCCHHHHHH
T ss_pred CHHHHH--HhcCCCEEEECchhhhHHHHHHhhhcchhhhcccCCCEEEECchhhhhhhccccchhhcCCcccchhHHHHH
Confidence 765443 334689999999999 6666543 4668899999999999998 775 66889
Q ss_pred HHHHHhhh---------hcceeE-----------------EEecccchH---HHHH--HHHhcC-CCeEE-------Eec
Q 007814 321 REVFDHFK---------AQRQTL-----------------LFSATMPTK---IQNF--ARSALV-KPVTV-------NVG 361 (588)
Q Consensus 321 ~~i~~~~~---------~~~q~l-----------------~~SAT~~~~---i~~~--~~~~l~-~p~~i-------~~~ 361 (588)
..++..++ ..+|++ +||||++.. +... +..++. +...+ .+.
T Consensus 241 ~~iv~~l~~~~~y~vd~k~rq~~lt~~g~~~~e~~~~i~~Lfsat~~~~~~~i~~al~A~~l~~~d~dYiv~dg~v~ivD 320 (844)
T 1tf5_A 241 NAFVRTLKAEKDYTYDIKTKAVQLTEEGMTKAEKAFGIDNLFDVKHVALNHHINQALKAHVAMQKDVDYVVEDGQVVIVD 320 (844)
T ss_dssp HHHHTTCCSSSSBCCCSSSCCCCBCHHHHHHHHHHTTCSCTTSGGGHHHHHHHHHHHHHHHTCCBTTTEEEETTEEEEBC
T ss_pred HHHHHhCcccccceeccccceEEecHHHHHHHHHHhCccccCCCccchhHHHHHHHHHHHHHhhcCCceEEecCeeEEee
Confidence 99999987 367887 999998743 3332 222221 11111 000
Q ss_pred C-----------------------------CCCc-------------------------------------------ccc
Q 007814 362 R-----------------------------AGAA-------------------------------------------NLD 369 (588)
Q Consensus 362 ~-----------------------------~~~~-------------------------------------------~~~ 369 (588)
. .... +..
T Consensus 321 e~tgr~m~grr~sdGLhqaieake~v~I~~e~~t~a~It~q~~fr~y~kl~GmTGTa~te~~e~~~iY~l~vv~IPtn~p 400 (844)
T 1tf5_A 321 SFTGRLMKGRRYSEGLHQAIEAKEGLEIQNESMTLATITFQNYFRMYEKLAGMTGTAKTEEEEFRNIYNMQVVTIPTNRP 400 (844)
T ss_dssp TTTCCBCTTCCCSTTHHHHHHHHTTCCCCCCEEEEEEEEHHHHHTTSSEEEEEESCCGGGHHHHHHHHCCCEEECCCSSC
T ss_pred cccccccCCCccchhhHHHHhhcccceecccccccceeeHHHHHHHHhhhccCCcccchhHHHHHHHhCCceEEecCCCC
Confidence 0 0000 000
Q ss_pred e----EEEeeehhhHHHHHHHHHHhhc---CCCCEEEEeCccccHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhc
Q 007814 370 V----IQEVEYVKQEAKIVYLLECLQK---TPPPVLIFCENKADVDDIHEYLLLKGVEAVAVHGGKDQEEREYAISSFKA 442 (588)
Q Consensus 370 ~----~~~~~~~~~~~k~~~ll~~l~~---~~~~viIF~~s~~~~~~l~~~L~~~g~~~~~ihg~~~~~~R~~~~~~f~~ 442 (588)
+ .+.+.+.....|+..++..+.. .+.++||||+|+..++.++..|...|+++.++||++.+.+|..+...|+.
T Consensus 401 ~~r~d~~d~v~~~~~~K~~al~~~i~~~~~~~~pvLVft~s~~~se~Ls~~L~~~gi~~~vLhg~~~~rEr~ii~~ag~~ 480 (844)
T 1tf5_A 401 VVRDDRPDLIYRTMEGKFKAVAEDVAQRYMTGQPVLVGTVAVETSELISKLLKNKGIPHQVLNAKNHEREAQIIEEAGQK 480 (844)
T ss_dssp CCCEECCCEEESSHHHHHHHHHHHHHHHHHHTCCEEEEESCHHHHHHHHHHHHTTTCCCEEECSSCHHHHHHHHTTTTST
T ss_pred cccccCCcEEEeCHHHHHHHHHHHHHHHHhcCCcEEEEECCHHHHHHHHHHHHHCCCCEEEeeCCccHHHHHHHHHcCCC
Confidence 0 0113345567787777776643 56799999999999999999999999999999999988888766666666
Q ss_pred CCcEEEEEcCccccCCCCC--------CcceEEecCCCCChhHHHHHhcccccCCCccEEEEEecCCCC
Q 007814 443 GKKDVLVATDVASKGLDFP--------DIQHVINYDMPAEIENYVHRIGRTGRCGKTGIATTFINKNQS 503 (588)
Q Consensus 443 g~~~vLVaT~~~~~GlDip--------~v~~VI~~~~p~s~~~y~qriGRagR~g~~g~~~~~~~~~~~ 503 (588)
| .|+|||++++||+||+ ++.+||+|++|.|...|+||+|||||.|.+|.+++|++..++
T Consensus 481 g--~VlIATdmAgRG~DI~l~~~V~~~ggl~VIn~d~p~s~r~y~hr~GRTGRqG~~G~s~~~vs~eD~ 547 (844)
T 1tf5_A 481 G--AVTIATNMAGRGTDIKLGEGVKELGGLAVVGTERHESRRIDNQLRGRSGRQGDPGITQFYLSMEDE 547 (844)
T ss_dssp T--CEEEEETTSSTTCCCCCCTTSGGGTSEEEEESSCCSSHHHHHHHHTTSSGGGCCEEEEEEEETTSS
T ss_pred C--eEEEeCCccccCcCccccchhhhcCCcEEEEecCCCCHHHHHhhcCccccCCCCCeEEEEecHHHH
Confidence 5 6999999999999999 788999999999999999999999999999999999998754
No 20
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.9e-48 Score=451.59 Aligned_cols=332 Identities=19% Similarity=0.210 Sum_probs=269.5
Q ss_pred CCCCCCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEE
Q 007814 143 KNFKDMRFPEPILKKLKAKGIVQPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFC 222 (588)
Q Consensus 143 ~~f~~~~l~~~l~~~l~~~g~~~p~~~Q~~~i~~il~g~dvii~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~ 222 (588)
..|..+++++.+...+...++..|+|+|.++|+.+++|++++++||||||||++|++|++..+. .++++
T Consensus 162 ~~~~~~~l~~~~~~~~~~~~~f~ltp~Q~~AI~~i~~g~dvLV~ApTGSGKTlva~l~i~~~l~-----------~g~rv 230 (1108)
T 3l9o_A 162 PNYDYTPIAEHKRVNEARTYPFTLDPFQDTAISCIDRGESVLVSAHTSAGKTVVAEYAIAQSLK-----------NKQRV 230 (1108)
T ss_dssp SCCCSSTTTTTCCCSCSSCCSSCCCHHHHHHHHHHTTTCCEEEECCSSSHHHHHHHHHHHHHHH-----------TTCEE
T ss_pred CCcccCCCChhhhHHHHHhCCCCCCHHHHHHHHHHHcCCCEEEECCCCCChHHHHHHHHHHHHh-----------cCCeE
Confidence 3677778887777777667778899999999999999999999999999999999999998763 46799
Q ss_pred EEEcCCHHHHHHHHHHHHHHhhcccccCCCCceEEEEEcCcchHHHHHHHhcCCcEEEeChHHHHHHHHcccCCCCCcce
Q 007814 223 LIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMNLDNCRY 302 (588)
Q Consensus 223 Lil~Ptr~La~Q~~~~~~~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~L~~~l~~~~~~l~~~~~ 302 (588)
||++||++|+.|+++.+.+++. .+.+++|+.+.. .+++|+|+||++|.+++.+....+.++++
T Consensus 231 lvl~PtraLa~Q~~~~l~~~~~----------~VglltGd~~~~-------~~~~IlV~Tpe~L~~~L~~~~~~l~~l~l 293 (1108)
T 3l9o_A 231 IYTSPIKALSNQKYRELLAEFG----------DVGLMTGDITIN-------PDAGCLVMTTEILRSMLYRGSEVMREVAW 293 (1108)
T ss_dssp EEEESSHHHHHHHHHHHHHHTS----------SEEEECSSCBCC-------CSCSEEEEEHHHHHHHHHHCSSHHHHEEE
T ss_pred EEEcCcHHHHHHHHHHHHHHhC----------CccEEeCccccC-------CCCCEEEeChHHHHHHHHcCccccccCCE
Confidence 9999999999999999999852 577788887643 35899999999999999988777889999
Q ss_pred eEecCcccccccCcHHHHHHHHHhhhhcceeEEEecccchH--HHHHHHHhcCCCeEEEecCCCCcccceEEEeee----
Q 007814 303 LTLDEADRLVDLGFEDDIREVFDHFKAQRQTLLFSATMPTK--IQNFARSALVKPVTVNVGRAGAANLDVIQEVEY---- 376 (588)
Q Consensus 303 lViDEah~l~~~~~~~~i~~i~~~~~~~~q~l~~SAT~~~~--i~~~~~~~l~~p~~i~~~~~~~~~~~~~~~~~~---- 376 (588)
|||||||+|.+++|+..+..++..++...|+++||||+|+. +..++......|..+......... +...+..
T Consensus 294 VVIDEaH~l~d~~rg~~~e~ii~~l~~~~qvl~lSATipn~~e~a~~l~~~~~~~~~vi~~~~rp~p--l~~~~~~~~~~ 371 (1108)
T 3l9o_A 294 VIFDEVHYMRDKERGVVWEETIILLPDKVRYVFLSATIPNAMEFAEWICKIHSQPCHIVYTNFRPTP--LQHYLFPAHGD 371 (1108)
T ss_dssp EEEETGGGTTSHHHHHHHHHHHHHSCTTSEEEEEECSCSSCHHHHHHHHHHTCSCEEEEEECCCSSC--EEEEEEETTSS
T ss_pred EEEhhhhhccccchHHHHHHHHHhcCCCceEEEEcCCCCCHHHHHHHHHhhcCCCeEEEecCCCccc--ceEEEeecCCc
Confidence 99999999999999999999999999999999999999875 446666666666555433221111 1111000
Q ss_pred -----h---h-------------------------------------------hHHHHHHHHHHhhc-CCCCEEEEeCcc
Q 007814 377 -----V---K-------------------------------------------QEAKIVYLLECLQK-TPPPVLIFCENK 404 (588)
Q Consensus 377 -----~---~-------------------------------------------~~~k~~~ll~~l~~-~~~~viIF~~s~ 404 (588)
+ . ....+..++..+.. ...++||||+++
T Consensus 372 ~~~~~vd~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~l~~~~~~~vIVF~~sr 451 (1108)
T 3l9o_A 372 GIYLVVDEKSTFREENFQKAMASISNQIGDDPNSTDSRGKKGQTYKGGSAKGDAKGDIYKIVKMIWKKKYNPVIVFSFSK 451 (1108)
T ss_dssp CCEEEEETTTEECHHHHHHHHTTC-----------------------------CHHHHHHHHHHHHHTTCCCEEEEESCH
T ss_pred ceeeeeccccchhhhhHHHHHHHHHhhhcccccccccccccccccccccccccchhHHHHHHHHHHhcCCCCEEEEeCcH
Confidence 0 0 03344445555544 456999999999
Q ss_pred ccHHHHHHHHHHcCCc---------------------------------------EEEEeCCCCHHHHHHHHHHHhcCCc
Q 007814 405 ADVDDIHEYLLLKGVE---------------------------------------AVAVHGGKDQEEREYAISSFKAGKK 445 (588)
Q Consensus 405 ~~~~~l~~~L~~~g~~---------------------------------------~~~ihg~~~~~~R~~~~~~f~~g~~ 445 (588)
..|+.++..|...++. +..+||+|++.+|..+++.|++|.+
T Consensus 452 ~~~e~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gV~~~Hg~l~~~~R~~v~~~F~~G~i 531 (1108)
T 3l9o_A 452 RDCEELALKMSKLDFNSDDEKEALTKIFNNAIALLPETDRELPQIKHILPLLRRGIGIHHSGLLPILKEVIEILFQEGFL 531 (1108)
T ss_dssp HHHHHHHHHTCSHHHHCC----CHHHHGGGSCTHHHHHTTCCHHHHHHTHHHHHTEEEECSCSCHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHhhcchhhhhhhhHHHHHHhhhcCeeeecCCCCHHHHHHHHHHHhCCCC
Confidence 9999999998653332 7899999999999999999999999
Q ss_pred EEEEEcCccccCCCCCCcceEEecCCCC--------ChhHHHHHhcccccCC--CccEEEEEecCCCCh
Q 007814 446 DVLVATDVASKGLDFPDIQHVINYDMPA--------EIENYVHRIGRTGRCG--KTGIATTFINKNQSE 504 (588)
Q Consensus 446 ~vLVaT~~~~~GlDip~v~~VI~~~~p~--------s~~~y~qriGRagR~g--~~g~~~~~~~~~~~~ 504 (588)
+|||||+++++|||+|++++||+++.|+ |+.+|+||+|||||.| ..|.+++++.+....
T Consensus 532 kVLVAT~vla~GIDiP~v~~VI~~~~~~d~~~~r~iS~~eyiQr~GRAGR~G~d~~G~~ill~~~~~~~ 600 (1108)
T 3l9o_A 532 KVLFATETFSIGLNMPAKTVVFTSVRKWDGQQFRWVSGGEYIQMSGRAGRRGLDDRGIVIMMIDEKMEP 600 (1108)
T ss_dssp CEEEEESCCCSCCCC--CEEEESCSEEESSSCEEECCHHHHHHHHHHSCCSSSCSSEEEEEEECCCCCH
T ss_pred eEEEECcHHhcCCCCCCceEEEecCcccCccccccCCHHHHHHhhcccCCCCCCCceEEEEEecCCcCH
Confidence 9999999999999999999999888743 6677999999999999 678888888776443
No 21
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=100.00 E-value=8.6e-47 Score=416.05 Aligned_cols=327 Identities=17% Similarity=0.212 Sum_probs=201.9
Q ss_pred CCCCCcHHHHHHHHHHhcCCCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEEEEEcCCHHHHHHHHHHHHH
Q 007814 162 GIVQPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFCLIVCPSRELARQTYEVVEQ 241 (588)
Q Consensus 162 g~~~p~~~Q~~~i~~il~g~dvii~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Q~~~~~~~ 241 (588)
+..+|+|+|.++++.+++|+|+++++|||||||++|++|++..+.... ...++++|||+||++|+.|+++.+.+
T Consensus 4 ~~~~~~~~Q~~~i~~~~~~~~~l~~~~tGsGKT~~~~~~~~~~~~~~~------~~~~~~~lil~P~~~L~~q~~~~~~~ 77 (556)
T 4a2p_A 4 ETKKARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMP------AGRKAKVVFLATKVPVYEQQKNVFKH 77 (556)
T ss_dssp ----CCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHTCC------SSCCCCEEEECSSHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHHhCc------ccCCCeEEEEeCCHHHHHHHHHHHHH
Confidence 446899999999999999999999999999999999999998875521 12377899999999999999999999
Q ss_pred HhhcccccCCCCceEEEEEcCcchHHHHHHHhcCCcEEEeChHHHHHHHHcccC-CCCCcceeEecCcccccccCcHHHH
Q 007814 242 FLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKM-NLDNCRYLTLDEADRLVDLGFEDDI 320 (588)
Q Consensus 242 ~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~L~~~l~~~~~-~l~~~~~lViDEah~l~~~~~~~~i 320 (588)
++... ++++..++|+.....+...+..+++|+|+||++|.+++....+ .+..+++|||||||++.++++...+
T Consensus 78 ~~~~~------~~~~~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~vViDEah~~~~~~~~~~~ 151 (556)
T 4a2p_A 78 HFERQ------GYSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHNTTGNHPYNVL 151 (556)
T ss_dssp HHGGG------TCCEEECCCC-----CHHHHHHHCSEEEECHHHHHHHHHSSSCCCSTTCSEEEEETGGGCSTTSHHHHH
T ss_pred Hhccc------CceEEEEeCCCCcchhHHHhhCCCCEEEECHHHHHHHHHhCcccccccCCEEEEECCcccCCcchHHHH
Confidence 98765 7899999999887777777777799999999999999988777 7899999999999999988753333
Q ss_pred H-HHHHh-h---hhcceeEEEecccch-----------HHHHHHHH------------------hcCCCeEEEecCCCCc
Q 007814 321 R-EVFDH-F---KAQRQTLLFSATMPT-----------KIQNFARS------------------ALVKPVTVNVGRAGAA 366 (588)
Q Consensus 321 ~-~i~~~-~---~~~~q~l~~SAT~~~-----------~i~~~~~~------------------~l~~p~~i~~~~~~~~ 366 (588)
. ..+.. + .+..|+++||||++. .+..+... +...|...........
T Consensus 152 ~~~~~~~~~~~~~~~~~~l~lSAT~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (556)
T 4a2p_A 152 MTRYLEQKFNSASQLPQILGLTASVGVGNAKNIEETIEHICSLCSYLDIQAISTVRENIQELQRFMNKPEIDVRLVKRRI 231 (556)
T ss_dssp HHHHHHHHHCC---CCEEEEEESCCCCTTCSSHHHHHHHHHHHHHHHTCSEEECCCTTHHHHHHHTCCCCEEEEECCCCS
T ss_pred HHHHHHhhhcccCCCCeEEEEeCCcccCchhhHHHHHHHHHHHHHhcCCeEecchhcchHHHHhcCCCCceEEEEcCCCc
Confidence 2 22211 1 345789999999953 11111111 1122211111000000
Q ss_pred ccc-------e-------------------EEE--ee------eh-----------------------------------
Q 007814 367 NLD-------V-------------------IQE--VE------YV----------------------------------- 377 (588)
Q Consensus 367 ~~~-------~-------------------~~~--~~------~~----------------------------------- 377 (588)
... . ... +. ++
T Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 311 (556)
T 4a2p_A 232 HNPFAAIISNLMSETEALMRTIYSVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLEDKEEESRICRALFICTEHLRKY 311 (556)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHCC---------CCCSSHHHHHHHHHHHHHHHHC---CHHHHHHHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHHHHHhhhhhhhcccccccchhhHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHH
Confidence 000 0 000 00 00
Q ss_pred ---------------------------------------------------------hhHHHHHHHHHHhh-----cCCC
Q 007814 378 ---------------------------------------------------------KQEAKIVYLLECLQ-----KTPP 395 (588)
Q Consensus 378 ---------------------------------------------------------~~~~k~~~ll~~l~-----~~~~ 395 (588)
....|+..+.+.+. ..+.
T Consensus 312 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~K~~~L~~~l~~~~~~~~~~ 391 (556)
T 4a2p_A 312 NDALIISEDARIIDALSYLTEFFTNVKNGPYTELEQHLTAKFQEKEPELIALSKDETNENPKLEELVCILDDAYRYNPQT 391 (556)
T ss_dssp HHHHHHHHHSCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTHHHHHHHHHCSSSCCHHHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHhhhhhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHhhHHHHhhhhccCCCCCChHHHHHHHHHHHHhcCCCCc
Confidence 00224444555553 4567
Q ss_pred CEEEEeCccccHHHHHHHHHHc------------CCcEEEEeCCCCHHHHHHHHHHHhc-CCcEEEEEcCccccCCCCCC
Q 007814 396 PVLIFCENKADVDDIHEYLLLK------------GVEAVAVHGGKDQEEREYAISSFKA-GKKDVLVATDVASKGLDFPD 462 (588)
Q Consensus 396 ~viIF~~s~~~~~~l~~~L~~~------------g~~~~~ihg~~~~~~R~~~~~~f~~-g~~~vLVaT~~~~~GlDip~ 462 (588)
++||||+++..++.+++.|... |..+..+||+|++.+|..+++.|++ |+++|||||+++++|||+|+
T Consensus 392 k~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~R~~~~~~F~~~g~~~vLvaT~~~~~GiDip~ 471 (556)
T 4a2p_A 392 RTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATSVADEGIDIVQ 471 (556)
T ss_dssp CEEEEESSHHHHHHHHHHHTTCSGGGSCCEEC------------------------------CCEEEEEC----------
T ss_pred eEEEEEccHHHHHHHHHHHHhCCCcceeeeeEEEccCCcccccccCHHHHHHHHHHhcccCceEEEEEcCchhcCCCchh
Confidence 9999999999999999999775 5666677889999999999999999 99999999999999999999
Q ss_pred cceEEecCCCCChhHHHHHhcccccCCCccEEEEEecCCC
Q 007814 463 IQHVINYDMPAEIENYVHRIGRTGRCGKTGIATTFINKNQ 502 (588)
Q Consensus 463 v~~VI~~~~p~s~~~y~qriGRagR~g~~g~~~~~~~~~~ 502 (588)
+++||+||+|+|+..|+||+|| ||. +.|.+++|+++..
T Consensus 472 v~~VI~~d~p~s~~~~~Qr~GR-gR~-~~g~~~~l~~~~~ 509 (556)
T 4a2p_A 472 CNLVVLYEYSGNVTKMIQVRGR-GRA-AGSKCILVTSKTE 509 (556)
T ss_dssp -CEEEEETCCSCHHHHHHC----------CCEEEEESCHH
T ss_pred CCEEEEeCCCCCHHHHHHhcCC-CCC-CCceEEEEEeCcc
Confidence 9999999999999999999999 999 8999999998763
No 22
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=100.00 E-value=1.2e-46 Score=426.93 Aligned_cols=332 Identities=20% Similarity=0.310 Sum_probs=268.1
Q ss_pred CCCCCCCCHHHHHHHHHCCCCCCcHHHHHHHHH-HhcCCCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEE
Q 007814 144 NFKDMRFPEPILKKLKAKGIVQPTPIQVQGLPV-VLSGRDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFC 222 (588)
Q Consensus 144 ~f~~~~l~~~l~~~l~~~g~~~p~~~Q~~~i~~-il~g~dvii~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~ 222 (588)
+|+++++|+.+.+.+.+.||..|+|+|.++++. ++++++++++||||||||++|.+|++..+.. .+.++
T Consensus 2 ~f~~l~l~~~~~~~l~~~g~~~l~~~Q~~~i~~~~~~~~~~lv~apTGsGKT~~~~l~il~~~~~----------~~~~~ 71 (720)
T 2zj8_A 2 RVDELRVDERIKSTLKERGIESFYPPQAEALKSGILEGKNALISIPTASGKTLIAEIAMVHRILT----------QGGKA 71 (720)
T ss_dssp BGGGCCSCHHHHHHHHHTTCCBCCHHHHHHHTTTGGGTCEEEEECCGGGCHHHHHHHHHHHHHHH----------HCSEE
T ss_pred cHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCcEEEEcCCccHHHHHHHHHHHHHHHh----------CCCEE
Confidence 588999999999999999999999999999998 8899999999999999999999999988764 25789
Q ss_pred EEEcCCHHHHHHHHHHHHHHhhcccccCCCCceEEEEEcCcchHHHHHHHhcCCcEEEeChHHHHHHHHcccCCCCCcce
Q 007814 223 LIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMNLDNCRY 302 (588)
Q Consensus 223 Lil~Ptr~La~Q~~~~~~~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~L~~~l~~~~~~l~~~~~ 302 (588)
||++|+++||.|+++.++++.. + ++++..++|+....... ...++|+|+||++|..++.+....++++++
T Consensus 72 l~i~P~raLa~q~~~~~~~l~~-~------g~~v~~~~G~~~~~~~~---~~~~~Iiv~Tpe~l~~~~~~~~~~l~~~~~ 141 (720)
T 2zj8_A 72 VYIVPLKALAEEKFQEFQDWEK-I------GLRVAMATGDYDSKDEW---LGKYDIIIATAEKFDSLLRHGSSWIKDVKI 141 (720)
T ss_dssp EEECSSGGGHHHHHHHTGGGGG-G------TCCEEEECSCSSCCCGG---GGGCSEEEECHHHHHHHHHHTCTTGGGEEE
T ss_pred EEEcCcHHHHHHHHHHHHHHHh-c------CCEEEEecCCCCccccc---cCCCCEEEECHHHHHHHHHcChhhhhcCCE
Confidence 9999999999999999965532 2 78899999976654331 235899999999998888876666889999
Q ss_pred eEecCcccccccCcHHHHHHHHHhhhhcceeEEEecccchHHHHHHHHhcCCCeEEEecCCCCcccceEEE------eee
Q 007814 303 LTLDEADRLVDLGFEDDIREVFDHFKAQRQTLLFSATMPTKIQNFARSALVKPVTVNVGRAGAANLDVIQE------VEY 376 (588)
Q Consensus 303 lViDEah~l~~~~~~~~i~~i~~~~~~~~q~l~~SAT~~~~i~~~~~~~l~~p~~i~~~~~~~~~~~~~~~------~~~ 376 (588)
|||||+|++.++++...+..++..++...|++++|||+++. ..+.. ++..+. +..... ...+... +.+
T Consensus 142 vIiDE~H~l~~~~r~~~~~~ll~~l~~~~~ii~lSATl~n~-~~~~~-~l~~~~-~~~~~r---p~~l~~~~~~~~~~~~ 215 (720)
T 2zj8_A 142 LVADEIHLIGSRDRGATLEVILAHMLGKAQIIGLSATIGNP-EELAE-WLNAEL-IVSDWR---PVKLRRGVFYQGFVTW 215 (720)
T ss_dssp EEEETGGGGGCTTTHHHHHHHHHHHBTTBEEEEEECCCSCH-HHHHH-HTTEEE-EECCCC---SSEEEEEEEETTEEEE
T ss_pred EEEECCcccCCCcccHHHHHHHHHhhcCCeEEEEcCCcCCH-HHHHH-HhCCcc-cCCCCC---CCcceEEEEeCCeeec
Confidence 99999999999889999999999988789999999999863 34443 333211 111100 0111110 111
Q ss_pred hh-----hHHHHHHHHHHhhcCCCCEEEEeCccccHHHHHHHHHHc------------------C---------------
Q 007814 377 VK-----QEAKIVYLLECLQKTPPPVLIFCENKADVDDIHEYLLLK------------------G--------------- 418 (588)
Q Consensus 377 ~~-----~~~k~~~ll~~l~~~~~~viIF~~s~~~~~~l~~~L~~~------------------g--------------- 418 (588)
.. .......+.+.+ ..++++||||+++..++.++..|... +
T Consensus 216 ~~~~~~~~~~~~~~~~~~~-~~~~~~LVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~~~ 294 (720)
T 2zj8_A 216 EDGSIDRFSSWEELVYDAI-RKKKGALIFVNMRRKAERVALELSKKVKSLLTKPEIRALNELADSLEENPTNEKLAKAIR 294 (720)
T ss_dssp TTSCEEECSSTTHHHHHHH-HTTCCEEEECSCHHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHTSCSCHHHHHHHHHHT
T ss_pred cccchhhhhHHHHHHHHHH-hCCCCEEEEecCHHHHHHHHHHHHHHHHHhcChhhHHHHHHHHHHHhcccchHHHHHHHh
Confidence 11 112222233333 35689999999999999999998753 1
Q ss_pred CcEEEEeCCCCHHHHHHHHHHHhcCCcEEEEEcCccccCCCCCCcceEEe----cC----CCCChhHHHHHhcccccCC-
Q 007814 419 VEAVAVHGGKDQEEREYAISSFKAGKKDVLVATDVASKGLDFPDIQHVIN----YD----MPAEIENYVHRIGRTGRCG- 489 (588)
Q Consensus 419 ~~~~~ihg~~~~~~R~~~~~~f~~g~~~vLVaT~~~~~GlDip~v~~VI~----~~----~p~s~~~y~qriGRagR~g- 489 (588)
..+..+||++++.+|..+++.|++|..+|||||+++++|+|+|++++||+ || .|.+..+|+||+|||||.|
T Consensus 295 ~~v~~~h~~l~~~~R~~v~~~f~~g~~~vlvaT~~l~~Gvdip~~~~VI~~~~~yd~~g~~~~s~~~~~Qr~GRaGR~g~ 374 (720)
T 2zj8_A 295 GGVAFHHAGLGRDERVLVEENFRKGIIKAVVATPTLSAGINTPAFRVIIRDIWRYSDFGMERIPIIEVHQMLGRAGRPKY 374 (720)
T ss_dssp TTEEEECTTSCHHHHHHHHHHHHTTSSCEEEECSTTGGGCCCCBSEEEECCSEECCSSSCEECCHHHHHHHHTTBCCTTT
T ss_pred cCeeeecCCCCHHHHHHHHHHHHCCCCeEEEECcHhhccCCCCceEEEEcCCeeecCCCCccCCHHHHHHHHhhcCCCCC
Confidence 24899999999999999999999999999999999999999999999999 76 5899999999999999998
Q ss_pred -CccEEEEEecCCC
Q 007814 490 -KTGIATTFINKNQ 502 (588)
Q Consensus 490 -~~g~~~~~~~~~~ 502 (588)
..|.|++++++.+
T Consensus 375 ~~~G~~~~l~~~~~ 388 (720)
T 2zj8_A 375 DEVGEGIIVSTSDD 388 (720)
T ss_dssp CSEEEEEEECSSSC
T ss_pred CCCceEEEEecCcc
Confidence 5789999988763
No 23
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=100.00 E-value=8.9e-46 Score=419.79 Aligned_cols=336 Identities=22% Similarity=0.331 Sum_probs=264.4
Q ss_pred CCCCCCCCCCHHHHHHHHHCCCCCCcHHHHHHHHH-HhcCCCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCC
Q 007814 142 IKNFKDMRFPEPILKKLKAKGIVQPTPIQVQGLPV-VLSGRDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGP 220 (588)
Q Consensus 142 ~~~f~~~~l~~~l~~~l~~~g~~~p~~~Q~~~i~~-il~g~dvii~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~ 220 (588)
..+|+++++|+.+.+.+.+.||..|+|+|.++++. +.++++++++||||||||+++.+|++..+.. .+.
T Consensus 7 ~~~~~~l~l~~~~~~~l~~~g~~~l~~~Q~~~i~~~~~~~~~~lv~apTGsGKT~~~~l~il~~~~~----------~~~ 76 (715)
T 2va8_A 7 WMPIEDLKLPSNVIEIIKKRGIKKLNPPQTEAVKKGLLEGNRLLLTSPTGSGKTLIAEMGIISFLLK----------NGG 76 (715)
T ss_dssp CCBGGGSSSCHHHHHHHHTTSCCBCCHHHHHHHHTTTTTTCCEEEECCTTSCHHHHHHHHHHHHHHH----------SCS
T ss_pred cCcHHHcCCCHHHHHHHHhCCCCCCCHHHHHHHHHHhcCCCcEEEEcCCCCcHHHHHHHHHHHHHHH----------CCC
Confidence 35799999999999999999999999999999999 7799999999999999999999999987654 367
Q ss_pred EEEEEcCCHHHHHHHHHHHHHHhhcccccCCCCceEEEEEcCcchHHHHHHHhcCCcEEEeChHHHHHHHHcccCCCCCc
Q 007814 221 FCLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMNLDNC 300 (588)
Q Consensus 221 ~~Lil~Ptr~La~Q~~~~~~~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~L~~~l~~~~~~l~~~ 300 (588)
+++|++|+++||.|+++.++.+. .+ ++++..++|+....... + ..++|+|+||++|..++.+....++++
T Consensus 77 ~il~i~P~r~La~q~~~~~~~~~-~~------g~~v~~~~G~~~~~~~~--~-~~~~Iiv~Tpe~l~~~~~~~~~~l~~~ 146 (715)
T 2va8_A 77 KAIYVTPLRALTNEKYLTFKDWE-LI------GFKVAMTSGDYDTDDAW--L-KNYDIIITTYEKLDSLWRHRPEWLNEV 146 (715)
T ss_dssp EEEEECSCHHHHHHHHHHHGGGG-GG------TCCEEECCSCSSSCCGG--G-GGCSEEEECHHHHHHHHHHCCGGGGGE
T ss_pred eEEEEeCcHHHHHHHHHHHHHhh-cC------CCEEEEEeCCCCCchhh--c-CCCCEEEEcHHHHHHHHhCChhHhhcc
Confidence 99999999999999999996443 22 68888899986654431 1 358999999999999888776668899
Q ss_pred ceeEecCcccccccCcHHHHHHHHHhhhhcceeEEEecccchHHHHHHHHhcCCCeEEEecCCCCcccce--------EE
Q 007814 301 RYLTLDEADRLVDLGFEDDIREVFDHFKAQRQTLLFSATMPTKIQNFARSALVKPVTVNVGRAGAANLDV--------IQ 372 (588)
Q Consensus 301 ~~lViDEah~l~~~~~~~~i~~i~~~~~~~~q~l~~SAT~~~~i~~~~~~~l~~p~~i~~~~~~~~~~~~--------~~ 372 (588)
++|||||+|.+.++++...+..++..++ ..|++++|||+++. ..+.. ++..+......+.......+ ..
T Consensus 147 ~~vIiDE~H~l~~~~~~~~l~~i~~~~~-~~~ii~lSATl~n~-~~~~~-~l~~~~~~~~~r~~~l~~~~~~~~~~~~~~ 223 (715)
T 2va8_A 147 NYFVLDELHYLNDPERGPVVESVTIRAK-RRNLLALSATISNY-KQIAK-WLGAEPVATNWRPVPLIEGVIYPERKKKEY 223 (715)
T ss_dssp EEEEECSGGGGGCTTTHHHHHHHHHHHH-TSEEEEEESCCTTH-HHHHH-HHTCEEEECCCCSSCEEEEEEEECSSTTEE
T ss_pred CEEEEechhhcCCcccchHHHHHHHhcc-cCcEEEEcCCCCCH-HHHHH-HhCCCccCCCCCCCCceEEEEecCCcccce
Confidence 9999999999998889889999988887 78999999999853 34443 33322111100000000000 00
Q ss_pred Eeeehh--------hHHHHHHHHHHhhcCCCCEEEEeCccccHHHHHHHHHHcC--------------------------
Q 007814 373 EVEYVK--------QEAKIVYLLECLQKTPPPVLIFCENKADVDDIHEYLLLKG-------------------------- 418 (588)
Q Consensus 373 ~~~~~~--------~~~k~~~ll~~l~~~~~~viIF~~s~~~~~~l~~~L~~~g-------------------------- 418 (588)
.+.+.. .......+.+.+ ..++++||||+++..++.++..|....
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 302 (715)
T 2va8_A 224 NVIFKDNTTKKVHGDDAIIAYTLDSL-SKNGQVLVFRNSRKMAESTALKIANYMNFVSLDENALSEILKQLDDIEEGGSD 302 (715)
T ss_dssp EEEETTSCEEEEESSSHHHHHHHHHH-TTTCCEEEECSSHHHHHHHHHHHHHTTTSSCCCHHHHHHHHHHHHTCCSSCHH
T ss_pred eeecCcchhhhcccchHHHHHHHHHH-hcCCCEEEEECCHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHhhhcccc
Confidence 111111 123333333433 466899999999999999999998642
Q ss_pred ----------CcEEEEeCCCCHHHHHHHHHHHhcCCcEEEEEcCccccCCCCCCcceEEe----cC-------CCCChhH
Q 007814 419 ----------VEAVAVHGGKDQEEREYAISSFKAGKKDVLVATDVASKGLDFPDIQHVIN----YD-------MPAEIEN 477 (588)
Q Consensus 419 ----------~~~~~ihg~~~~~~R~~~~~~f~~g~~~vLVaT~~~~~GlDip~v~~VI~----~~-------~p~s~~~ 477 (588)
..+..+||++++.+|..+++.|++|..+|||||+++++|||+|++++||+ || .|.|..+
T Consensus 303 ~~~~l~~~~~~~v~~~h~~l~~~~r~~v~~~f~~g~~~vlvaT~~l~~Gidip~~~~VI~~~~~~d~~~~~~~~~~s~~~ 382 (715)
T 2va8_A 303 EKELLKSLISKGVAYHHAGLSKALRDLIEEGFRQRKIKVIVATPTLAAGVNLPARTVIIGDIYRFNKKIAGYYDEIPIME 382 (715)
T ss_dssp HHHHHHHHHTTTEEEECTTSCHHHHHHHHHHHHTTCSCEEEECGGGGGSSCCCBSEEEECCC--------------CHHH
T ss_pred ccHHHHHHHhcCEEEECCCCCHHHHHHHHHHHHcCCCeEEEEChHHhcccCCCceEEEEeCCeeccccCCCCCCcCCHHH
Confidence 24889999999999999999999999999999999999999999999999 99 8999999
Q ss_pred HHHHhcccccCC--CccEEEEEecCC
Q 007814 478 YVHRIGRTGRCG--KTGIATTFINKN 501 (588)
Q Consensus 478 y~qriGRagR~g--~~g~~~~~~~~~ 501 (588)
|.||+|||||.| ..|.|++++++.
T Consensus 383 ~~Qr~GRaGR~g~~~~G~~~~l~~~~ 408 (715)
T 2va8_A 383 YKQMSGRAGRPGFDQIGESIVVVRDK 408 (715)
T ss_dssp HHHHHTTBCCTTTCSCEEEEEECSCG
T ss_pred HHHHhhhcCCCCCCCCceEEEEeCCc
Confidence 999999999998 479999998765
No 24
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=100.00 E-value=1.8e-46 Score=437.41 Aligned_cols=324 Identities=22% Similarity=0.327 Sum_probs=262.9
Q ss_pred HHHHHH-CCCCCCcHHHHHHHHHHhcCCCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEEEEEcCCHHHHH
Q 007814 155 LKKLKA-KGIVQPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFCLIVCPSRELAR 233 (588)
Q Consensus 155 ~~~l~~-~g~~~p~~~Q~~~i~~il~g~dvii~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~ 233 (588)
.+.+.. .|| +|||+|.++++.++.|+|++++||||||||++|++|++..+ ..++++|||+||++||.
T Consensus 68 ~~~~~~~~gf-~pt~iQ~~ai~~il~g~dvlv~ApTGSGKTl~~l~~il~~~-----------~~~~~~Lil~PtreLa~ 135 (1104)
T 4ddu_A 68 RSFFKKKFGK-DLTGYQRLWAKRIVQGKSFTMVAPTGVGKTTFGMMTALWLA-----------RKGKKSALVFPTVTLVK 135 (1104)
T ss_dssp HHHHHHHSSS-CCCHHHHHHHHHHTTTCCEEECCSTTCCHHHHHHHHHHHHH-----------TTTCCEEEEESSHHHHH
T ss_pred HHHHHHhcCC-CCCHHHHHHHHHHHcCCCEEEEeCCCCcHHHHHHHHHHHHH-----------hcCCeEEEEechHHHHH
Confidence 344443 477 69999999999999999999999999999998888877655 25788999999999999
Q ss_pred HHHHHHHHHhhcccccCCCCceEEEEEcCcch---HHHHHHHhcC-CcEEEeChHHHHHHHHcccCCCCCcceeEecCcc
Q 007814 234 QTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDM---RSQLEVVKRG-VHIVVATPGRLKDMLAKKKMNLDNCRYLTLDEAD 309 (588)
Q Consensus 234 Q~~~~~~~~~~~~~~~~~~~i~~~~~~gg~~~---~~~~~~l~~~-~~IvV~Tp~~L~~~l~~~~~~l~~~~~lViDEah 309 (588)
|+++.+.+++ . .++++..++||.+. ..+...+..+ ++|+|+||++|.+++.. +.+.++++|||||||
T Consensus 136 Q~~~~l~~l~-~------~~i~v~~l~Gg~~~~er~~~~~~l~~g~~~IlV~Tp~rL~~~l~~--l~~~~l~~lViDEaH 206 (1104)
T 4ddu_A 136 QTLERLQKLA-D------EKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREK--LSQKRFDFVFVDDVD 206 (1104)
T ss_dssp HHHHHHHTTS-C------TTSCEEEECTTCCTTHHHHHHHHHHTSCCSEEEEEHHHHHHSHHH--HHTSCCSEEEESCHH
T ss_pred HHHHHHHHhh-C------CCCeEEEEeCCCCHHHHHHHHHHHhCCCCCEEEECHHHHHHHHHh--hcccCcCEEEEeCCC
Confidence 9999999975 2 27899999999988 6667777776 99999999999888764 567889999999997
Q ss_pred ccc----------c-cCcHHH-HHHHHHhhh-----------hcceeEEEecc-cchHHHH-HHHHhcCCCeEEEecCCC
Q 007814 310 RLV----------D-LGFEDD-IREVFDHFK-----------AQRQTLLFSAT-MPTKIQN-FARSALVKPVTVNVGRAG 364 (588)
Q Consensus 310 ~l~----------~-~~~~~~-i~~i~~~~~-----------~~~q~l~~SAT-~~~~i~~-~~~~~l~~p~~i~~~~~~ 364 (588)
++. + +||..+ +..++..++ ..+|+++|||| .|..+.. +....+. +.+....
T Consensus 207 ~l~~~~r~~Dr~L~~~gf~~~~i~~il~~l~~~~~~~~~~~~~~~q~ll~SAT~~p~~~~~~~~~~~l~----i~v~~~~ 282 (1104)
T 4ddu_A 207 AVLKASRNIDTLLMMVGIPEEIIRKAFSTIKQGKIYERPKNLKPGILVVSSATAKPRGIRPLLFRDLLN----FTVGRLV 282 (1104)
T ss_dssp HHTTSSHHHHHHHHTSSCCHHHHHHHHHHHHHTSCCCCCSSCCCCEEEEECBSSCCCSSTTHHHHHHTC----CCCCBCC
T ss_pred ccccccccchhhhHhcCCCHHHHHHHHHhcccchhhhhhccCCCceEEEEcCCCCcHHHHHHHhhccee----EEeccCC
Confidence 644 5 888888 899999888 78999999999 5655442 3333332 2333333
Q ss_pred CcccceEEEeeehhhHHHHHHHHHHhhcCCCCEEEEeCccccHHHHHHHHHHcCCcEE-EEeCCCCHHHHHHHHHHHhcC
Q 007814 365 AANLDVIQEVEYVKQEAKIVYLLECLQKTPPPVLIFCENKADVDDIHEYLLLKGVEAV-AVHGGKDQEEREYAISSFKAG 443 (588)
Q Consensus 365 ~~~~~~~~~~~~~~~~~k~~~ll~~l~~~~~~viIF~~s~~~~~~l~~~L~~~g~~~~-~ihg~~~~~~R~~~~~~f~~g 443 (588)
....++.+.+........+ ...+...++++||||+++..++.++..|...|+.+. .+|| +|.+ ++.|++|
T Consensus 283 ~~~~~i~~~~~~~~k~~~L---~~ll~~~~~~~LVF~~s~~~a~~l~~~L~~~g~~~~~~lhg-----~rr~-l~~F~~G 353 (1104)
T 4ddu_A 283 SVARNITHVRISSRSKEKL---VELLEIFRDGILIFAQTEEEGKELYEYLKRFKFNVGETWSE-----FEKN-FEDFKVG 353 (1104)
T ss_dssp CCCCCEEEEEESCCCHHHH---HHHHHHHCSSEEEEESSSHHHHHHHHHHHHTTCCEEESSSS-----HHHH-HHHHHHT
T ss_pred CCcCCceeEEEecCHHHHH---HHHHHhcCCCEEEEECcHHHHHHHHHHHHhCCCCeeeEecC-----cHHH-HHHHHCC
Confidence 4455566666555444444 444444568999999999999999999999999998 9999 2555 9999999
Q ss_pred CcEEEEE----cCccccCCCCCC-cceEEecCCCC---------------------------------------------
Q 007814 444 KKDVLVA----TDVASKGLDFPD-IQHVINYDMPA--------------------------------------------- 473 (588)
Q Consensus 444 ~~~vLVa----T~~~~~GlDip~-v~~VI~~~~p~--------------------------------------------- 473 (588)
+.+|||| |+++++|||+|+ |++|||||+|.
T Consensus 354 ~~~VLVatas~TdvlarGIDip~~V~~VI~~d~P~~~~Sle~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~e~~~~~l~ 433 (1104)
T 4ddu_A 354 KINILIGVQAYYGKLTRGVDLPERIKYVIFWGTPSMRFSLELDKAPRFVLARVLKEMGLIKAQENPDVEELRKIAKEHLT 433 (1104)
T ss_dssp SCSEEEEETTTHHHHCCSCCCTTTCCEEEEESCCEEEEECSSSSCCHHHHHHHHHHHSSCSSCCCCHHHHHHHHHHHCCC
T ss_pred CCCEEEEecCCCCeeEecCcCCCCCCEEEEECCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 9999999 999999999999 99999999998
Q ss_pred ---------------------------ChhHHHHHhcccccCCC----ccEEEEEecCCCChhHHHHHHHHHH
Q 007814 474 ---------------------------EIENYVHRIGRTGRCGK----TGIATTFINKNQSETTLLDLKHLLQ 515 (588)
Q Consensus 474 ---------------------------s~~~y~qriGRagR~g~----~g~~~~~~~~~~~~~~~~~l~~~l~ 515 (588)
++..|+||+|||||.|. .|.+++|+ + +...+..|.+.+.
T Consensus 434 ~~~~~~~i~~~~~~l~~~~~~~~~~~pd~~tYihr~GRtgR~~~gg~~~Glsi~~~--~-d~~~~~~l~~~~~ 503 (1104)
T 4ddu_A 434 QKEFVEKVKEMFRGVVVKDEDLELIIPDVYTYIQASGRSSRILNGVLVKGVSVIFE--E-DEEIFESLKTRLL 503 (1104)
T ss_dssp HHHHHHHHHHHCCSSEEETTTTEEEEECHHHHHHHHHTTCCEETTEECCEEEEEEC--C-CHHHHHHHHHHHH
T ss_pred cHHHHHHHhhccceEEecCCeeEEEecChhhhhcccCchhcccCCCcccceEEEEE--e-cHHHHHHHHHHHh
Confidence 78899999999999654 45666666 3 6677777777775
No 25
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=100.00 E-value=1.2e-45 Score=406.68 Aligned_cols=323 Identities=19% Similarity=0.254 Sum_probs=225.4
Q ss_pred CCCcHHHHHHHHHHhcCCCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEEEEEcCCHHHHHHHHHHHHHHh
Q 007814 164 VQPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFCLIVCPSRELARQTYEVVEQFL 243 (588)
Q Consensus 164 ~~p~~~Q~~~i~~il~g~dvii~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Q~~~~~~~~~ 243 (588)
.+|+|+|.++++.+++|+|+++++|||||||++|++|++..+.... ...++++|||+||++|+.|+++.+.+++
T Consensus 3 ~~~~~~Q~~~i~~~~~~~~~l~~~~tGsGKT~~~~~~~~~~~~~~~------~~~~~~~lil~P~~~L~~q~~~~~~~~~ 76 (555)
T 3tbk_A 3 LKPRNYQLELALPAKKGKNTIICAPTGCGKTFVSLLICEHHLKKFP------CGQKGKVVFFANQIPVYEQQATVFSRYF 76 (555)
T ss_dssp CCCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHTCC------SSCCCCEEEECSSHHHHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHhCCCCEEEEeCCCChHHHHHHHHHHHHHHhcc------cCCCCEEEEEeCCHHHHHHHHHHHHHHh
Confidence 3799999999999999999999999999999999999998876531 1237789999999999999999999998
Q ss_pred hcccccCCCCceEEEEEcCcchHHHHHHHhcCCcEEEeChHHHHHHHHcccC-CCCCcceeEecCcccccccCcHHH-HH
Q 007814 244 TPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKM-NLDNCRYLTLDEADRLVDLGFEDD-IR 321 (588)
Q Consensus 244 ~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~L~~~l~~~~~-~l~~~~~lViDEah~l~~~~~~~~-i~ 321 (588)
... ++++..++|+.....+...+..+++|+|+||++|.+++....+ .+..+++|||||||++.+.+.... +.
T Consensus 77 ~~~------~~~~~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~vViDEah~~~~~~~~~~~~~ 150 (555)
T 3tbk_A 77 ERL------GYNIASISGATSDSVSVQHIIEDNDIIILTPQILVNNLNNGAIPSLSVFTLMIFDECHNTSKNHPYNQIMF 150 (555)
T ss_dssp HTT------TCCEEEECTTTGGGSCHHHHHHHCSEEEECHHHHHHHHHTSSSCCGGGCSEEEETTGGGCSTTCHHHHHHH
T ss_pred ccC------CcEEEEEcCCCcchhhHHHHhcCCCEEEECHHHHHHHHhcCcccccccCCEEEEECccccCCcchHHHHHH
Confidence 765 7899999999988777777777899999999999999988776 788999999999999998753222 22
Q ss_pred HHHHhh-----hhcceeEEEecccchH-----------HHHHHHHhcCCCeEEEecCC------CCcccceEEE-ee---
Q 007814 322 EVFDHF-----KAQRQTLLFSATMPTK-----------IQNFARSALVKPVTVNVGRA------GAANLDVIQE-VE--- 375 (588)
Q Consensus 322 ~i~~~~-----~~~~q~l~~SAT~~~~-----------i~~~~~~~l~~p~~i~~~~~------~~~~~~~~~~-~~--- 375 (588)
..+... ....|+++||||++.. +..+.. .+..+........ .......... +.
T Consensus 151 ~~~~~~~~~~~~~~~~~l~lSAT~~~~~~~~~~~~~~~~~~l~~-~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 229 (555)
T 3tbk_A 151 RYLDHKLGESRDPLPQVVGLTASVGVGDAKTAEEAMQHICKLCA-ALDASVIATVRDNVAELEQVVYKPQKISRKVASRT 229 (555)
T ss_dssp HHHHHHTSSCCSCCCEEEEEESCCCCTTCCSHHHHHHHHHHHHH-HTTCSEEECCCSCHHHHHTTCCCCCEEEEECCCCS
T ss_pred HHHHhhhccccCCCCeEEEEecCcccCccccHHHHHHHHHHHHH-hcCCeeeeccccCHHHHHhhcCCCceEEEEecCcc
Confidence 222221 1446899999999542 111111 1111111100000 0000000000 00
Q ss_pred --------------------------------------------eh----------------------------------
Q 007814 376 --------------------------------------------YV---------------------------------- 377 (588)
Q Consensus 376 --------------------------------------------~~---------------------------------- 377 (588)
+.
T Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 309 (555)
T 3tbk_A 230 SNTFKCIISQLMKETEKLAKDVSEELGKLFQIQNREFGTQKYEQWIVGVHKACSVFQMADKEEESRVCKALFLYTSHLRK 309 (555)
T ss_dssp CCHHHHHHHHHHHHHHHHHHTSCHHHHGGGGCCSCCSSSHHHHHHHHHHHHHHHTCCCSSHHHHHHHHHHHHHHHHHHHH
T ss_pred cChHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccccccchhhhHHHHHHHHHhhhhhccchhhHHHHHHHHHHHHHHHHH
Confidence 00
Q ss_pred ----------------------------------------------------------hhHHHHHHHHHHhhc-----CC
Q 007814 378 ----------------------------------------------------------KQEAKIVYLLECLQK-----TP 394 (588)
Q Consensus 378 ----------------------------------------------------------~~~~k~~~ll~~l~~-----~~ 394 (588)
....|+..+.+.+.. ..
T Consensus 310 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~ 389 (555)
T 3tbk_A 310 YNDALIISEDAQMTDALNYLKAFFHDVREAAFDETERELTRRFEEKLEELEKVSRDPSNENPKLRDLYLVLQEEYHLKPE 389 (555)
T ss_dssp HHHHHHHHHHSCHHHHHHHHHHHHHHHCC-----HHHHHHHHHHTTHHHHHHHHHCGGGCCHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHhhhhhhhHHHHHHHHHHHHHHHhhcccchHHHHHHHHHhhhhhhhhhhccCCCcCCHHHHHHHHHHHHHhccCCC
Confidence 002244444444432 45
Q ss_pred CCEEEEeCccccHHHHHHHHHHcC------------CcEEEEeCCCCHHHHHHHHHHHhc-CCcEEEEEcCccccCCCCC
Q 007814 395 PPVLIFCENKADVDDIHEYLLLKG------------VEAVAVHGGKDQEEREYAISSFKA-GKKDVLVATDVASKGLDFP 461 (588)
Q Consensus 395 ~~viIF~~s~~~~~~l~~~L~~~g------------~~~~~ihg~~~~~~R~~~~~~f~~-g~~~vLVaT~~~~~GlDip 461 (588)
.++||||+++..++.+++.|...+ .....+||+|++.+|..+++.|++ |+++|||||+++++|||+|
T Consensus 390 ~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~R~~~~~~F~~~g~~~vLvaT~~~~~GlDlp 469 (555)
T 3tbk_A 390 TKTILFVKTRALVDALKKWIEENPALSFLKPGILTGRGRTNRATGMTLPAQKCVLEAFRASGDNNILIATSVADEGIDIA 469 (555)
T ss_dssp CCEEEECSSHHHHHHHHHHHHHCGGGTTCCEEECCC--------------------------CCSEEEECCCTTCCEETT
T ss_pred ceEEEEeCcHHHHHHHHHHHhhCcCcCceeeeEEEecCCcccccccCHHHHHHHHHHHhcCCCeeEEEEcchhhcCCccc
Confidence 799999999999999999998864 345556779999999999999999 9999999999999999999
Q ss_pred CcceEEecCCCCChhHHHHHhcccccCCCccEEEEEecCC
Q 007814 462 DIQHVINYDMPAEIENYVHRIGRTGRCGKTGIATTFINKN 501 (588)
Q Consensus 462 ~v~~VI~~~~p~s~~~y~qriGRagR~g~~g~~~~~~~~~ 501 (588)
++++||+||+|+|+..|+||+|| ||. +.|.+++|+++.
T Consensus 470 ~v~~VI~~d~p~s~~~~~Qr~GR-gR~-~~g~~~~l~~~~ 507 (555)
T 3tbk_A 470 ECNLVILYEYVGNVIKMIQTRGR-GRA-RDSKCFLLTSSA 507 (555)
T ss_dssp SCSEEEEESCCSSCCCEECSSCC-CTT-TSCEEEEEESCH
T ss_pred cCCEEEEeCCCCCHHHHHHhcCc-CcC-CCceEEEEEcCC
Confidence 99999999999999999999999 999 899999999876
No 26
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=100.00 E-value=2.1e-46 Score=424.28 Aligned_cols=333 Identities=18% Similarity=0.242 Sum_probs=217.9
Q ss_pred HHHHHHCCCCCCcHHHHHHHHHHhcCCCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEEEEEcCCHHHHHH
Q 007814 155 LKKLKAKGIVQPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFCLIVCPSRELARQ 234 (588)
Q Consensus 155 ~~~l~~~g~~~p~~~Q~~~i~~il~g~dvii~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Q 234 (588)
...+...|+..|+|+|.++++.++.|+|+|+++|||+|||++|++|++..+.... .+.++++|||+||++|+.|
T Consensus 3 ~~~l~~~g~~~lr~~Q~~~i~~~l~g~~~iv~~~TGsGKTl~~~~~i~~~l~~~~------~~~~~~~lvl~Pt~~L~~Q 76 (696)
T 2ykg_A 3 VSDTNLYSPFKPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFP------QGQKGKVVFFANQIPVYEQ 76 (696)
T ss_dssp ----CTTC--CCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHHSC------TTCCCCEEEECSSHHHHHH
T ss_pred CCcccccCCCCccHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHHHHHHhCc------cCCCCeEEEEECCHHHHHH
Confidence 3456677999999999999999999999999999999999999999998775521 1234689999999999999
Q ss_pred HHHHHHHHhhcccccCCCCceEEEEEcCcchHHHHHHHhcCCcEEEeChHHHHHHHHcccC-CCCCcceeEecCcccccc
Q 007814 235 TYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKM-NLDNCRYLTLDEADRLVD 313 (588)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~L~~~l~~~~~-~l~~~~~lViDEah~l~~ 313 (588)
+.+.+.+++... ++++..++|+.....+...+..+++|+|+||++|.+.+....+ .+..+++|||||||++.+
T Consensus 77 ~~~~~~~~~~~~------~~~v~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~L~~~l~~~~~~~l~~~~~vViDEaH~~~~ 150 (696)
T 2ykg_A 77 NKSVFSKYFERH------GYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDECHNTSK 150 (696)
T ss_dssp HHHHHHHHTTTT------TCCEEEECSSSCSSSCHHHHHHTCSEEEECHHHHHHHHHTTSSCCGGGCSEEEEETGGGCST
T ss_pred HHHHHHHHhccC------CceEEEEeCCccccccHHHhccCCCEEEECHHHHHHHHhcCcccccccccEEEEeCCCcccC
Confidence 999999997643 7899999999877666677777899999999999999988766 688999999999999986
Q ss_pred cCcHH-HHHHHHHh-h----hhcceeEEEecccc-------hH-HHHHHHH---------------------hcCCCeEE
Q 007814 314 LGFED-DIREVFDH-F----KAQRQTLLFSATMP-------TK-IQNFARS---------------------ALVKPVTV 358 (588)
Q Consensus 314 ~~~~~-~i~~i~~~-~----~~~~q~l~~SAT~~-------~~-i~~~~~~---------------------~l~~p~~i 358 (588)
..... .+...+.. + +...+++++|||+. .. +..+... +...|...
T Consensus 151 ~~~~~~i~~~~l~~~~~~~~~~~~~il~LTATp~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~~l~~~~~~p~~~ 230 (696)
T 2ykg_A 151 QHPYNMIMFNYLDQKLGGSSGPLPQVIGLTASVGVGDAKTTDEALDYICKLCASLDASVIATVKHNLEELEQVVYKPQKF 230 (696)
T ss_dssp TCHHHHHHHHHHHHHHTTCCSCCCEEEEEESCCCCSSCCSHHHHHHHHHHHHHHTTCCEEECCCTTHHHHHHHSCCCEEE
T ss_pred cccHHHHHHHHHHHhhcccCCCCCeEEEEeCccccCccccHHHHHHHHHHHHHhcCCceEeecccchHHHHhhcCCCcee
Confidence 64222 22222221 1 35579999999996 11 1121111 11122111
Q ss_pred EecCCCCcc-----------------------------------------------------------------------
Q 007814 359 NVGRAGAAN----------------------------------------------------------------------- 367 (588)
Q Consensus 359 ~~~~~~~~~----------------------------------------------------------------------- 367 (588)
.........
T Consensus 231 ~~~~~~~~~~~fs~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 310 (696)
T 2ykg_A 231 FRKVESRISDKFKYIIAQLMRDTESLAKRICKDLENLSQIQNREFGTQKYEQWIVTVQKACMVFQMPDKDEESRICKALF 310 (696)
T ss_dssp EEECCCCSCCHHHHHHHHHHHHHHHHHHHHSTTGGGSSSCCSCCSSSHHHHHHHHHHHHTSCC------CCHHHHHHHHH
T ss_pred EEecCcccCChHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHHHHHhhcccchhhhHHHHHHH
Confidence 100000000
Q ss_pred ----------------------------------------cceEEEeee----------------hhhHHHHHHHHHHhh
Q 007814 368 ----------------------------------------LDVIQEVEY----------------VKQEAKIVYLLECLQ 391 (588)
Q Consensus 368 ----------------------------------------~~~~~~~~~----------------~~~~~k~~~ll~~l~ 391 (588)
..+.+.+.. .....++..+...+.
T Consensus 311 ~~~~~l~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~k~~~L~~ll~ 390 (696)
T 2ykg_A 311 LYTSHLRKYNDALIISEHARMKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQ 390 (696)
T ss_dssp HHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHTTHHHHHHHHHCGGGCCHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHhccchhhHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHH
Confidence 000000000 002234444555544
Q ss_pred c-----CCCCEEEEeCccccHHHHHHHHHHcC----CcEEEE--------eCCCCHHHHHHHHHHHhc-CCcEEEEEcCc
Q 007814 392 K-----TPPPVLIFCENKADVDDIHEYLLLKG----VEAVAV--------HGGKDQEEREYAISSFKA-GKKDVLVATDV 453 (588)
Q Consensus 392 ~-----~~~~viIF~~s~~~~~~l~~~L~~~g----~~~~~i--------hg~~~~~~R~~~~~~f~~-g~~~vLVaT~~ 453 (588)
. .+.++||||+++..++.+++.|...| +.+..+ ||+|++.+|..+++.|++ |+.+|||||++
T Consensus 391 ~~~~~~~~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~~~~l~G~~~~~~h~~~~~~eR~~v~~~F~~~g~~~vLVaT~v 470 (696)
T 2ykg_A 391 EEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSV 470 (696)
T ss_dssp HHHTTCTTCCEEEECSCHHHHHHHHHHHHHCTTCCSCCEEC-----------------------------CCSCSEEEES
T ss_pred HHhccCCCCcEEEEeCcHHHHHHHHHHHHhCCCccccceeEEEccCCCccccCCCHHHHHHHHHHHHhcCCccEEEEech
Confidence 3 35789999999999999999999988 888888 559999999999999998 99999999999
Q ss_pred cccCCCCCCcceEEecCCCCChhHHHHHhcccccCCCccEEEEEecCC
Q 007814 454 ASKGLDFPDIQHVINYDMPAEIENYVHRIGRTGRCGKTGIATTFINKN 501 (588)
Q Consensus 454 ~~~GlDip~v~~VI~~~~p~s~~~y~qriGRagR~g~~g~~~~~~~~~ 501 (588)
+++|||+|++++||+||+|+|++.|+||+|| ||. +.|.++.|++..
T Consensus 471 ~~~GiDip~v~~VI~~d~p~s~~~~~Qr~GR-GR~-~~g~~~~l~~~~ 516 (696)
T 2ykg_A 471 ADEGIDIAQCNLVILYEYVGNVIKMIQTRGR-GRA-RGSKCFLLTSNA 516 (696)
T ss_dssp SCCC---CCCSEEEEESCC--CCCC-----------CCCEEEEEESCH
T ss_pred hhcCCcCccCCEEEEeCCCCCHHHHHHhhcc-CcC-CCceEEEEecCC
Confidence 9999999999999999999999999999999 998 789999988765
No 27
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=100.00 E-value=4e-46 Score=421.43 Aligned_cols=330 Identities=22% Similarity=0.319 Sum_probs=261.5
Q ss_pred CCCCCC--CCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCE
Q 007814 144 NFKDMR--FPEPILKKLKAKGIVQPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPF 221 (588)
Q Consensus 144 ~f~~~~--l~~~l~~~l~~~g~~~p~~~Q~~~i~~il~g~dvii~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~ 221 (588)
+|++++ +|+.+.+.+.+.||..|+|+|.++++.++++++++++||||||||++|.+|++..+.. +++
T Consensus 2 ~f~~l~~~l~~~~~~~l~~~g~~~l~~~Q~~~i~~i~~~~~~lv~apTGsGKT~~~~l~il~~~~~-----------~~~ 70 (702)
T 2p6r_A 2 KVEELAESISSYAVGILKEEGIEELFPPQAEAVEKVFSGKNLLLAMPTAAGKTLLAEMAMVREAIK-----------GGK 70 (702)
T ss_dssp CSHHHHHHHHHHHHHHHHCC---CCCCCCHHHHHHHTTCSCEEEECSSHHHHHHHHHHHHHHHHHT-----------TCC
T ss_pred chhhhhhccCHHHHHHHHhCCCCCCCHHHHHHHHHHhCCCcEEEEcCCccHHHHHHHHHHHHHHHh-----------CCc
Confidence 578888 9999999999999999999999999999999999999999999999999999987542 568
Q ss_pred EEEEcCCHHHHHHHHHHHHHHhhcccccCCCCceEEEEEcCcchHHHHHHHhcCCcEEEeChHHHHHHHHcccCCCCCcc
Q 007814 222 CLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMNLDNCR 301 (588)
Q Consensus 222 ~Lil~Ptr~La~Q~~~~~~~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~L~~~l~~~~~~l~~~~ 301 (588)
+||++|+++||.|+++.++.+. .. ++++..++|+....... ..+++|+|+||++|..++.+....+++++
T Consensus 71 ~l~i~P~r~La~q~~~~~~~~~-~~------g~~v~~~~G~~~~~~~~---~~~~~Iiv~Tpe~l~~~l~~~~~~l~~~~ 140 (702)
T 2p6r_A 71 SLYVVPLRALAGEKYESFKKWE-KI------GLRIGISTGDYESRDEH---LGDCDIIVTTSEKADSLIRNRASWIKAVS 140 (702)
T ss_dssp EEEEESSHHHHHHHHHHHTTTT-TT------TCCEEEECSSCBCCSSC---STTCSEEEEEHHHHHHHHHTTCSGGGGCC
T ss_pred EEEEeCcHHHHHHHHHHHHHHH-hc------CCEEEEEeCCCCcchhh---ccCCCEEEECHHHHHHHHHcChhHHhhcC
Confidence 9999999999999999996443 22 78899999987654321 13689999999999988887666688999
Q ss_pred eeEecCcccccccCcHHHHHHHHHhh---hhcceeEEEecccchHHHHHHHHhcCCCeEEEecCCCCcccceEEEe----
Q 007814 302 YLTLDEADRLVDLGFEDDIREVFDHF---KAQRQTLLFSATMPTKIQNFARSALVKPVTVNVGRAGAANLDVIQEV---- 374 (588)
Q Consensus 302 ~lViDEah~l~~~~~~~~i~~i~~~~---~~~~q~l~~SAT~~~~i~~~~~~~l~~p~~i~~~~~~~~~~~~~~~~---- 374 (588)
+||+||+|++.++++...+..++..+ .+..|++++|||+++ ...+.. ++..+.. ..... ...+...+
T Consensus 141 ~vIiDE~H~l~~~~r~~~~~~ll~~l~~~~~~~~ii~lSATl~n-~~~~~~-~l~~~~~-~~~~r---~~~l~~~~~~~~ 214 (702)
T 2p6r_A 141 CLVVDEIHLLDSEKRGATLEILVTKMRRMNKALRVIGLSATAPN-VTEIAE-WLDADYY-VSDWR---PVPLVEGVLCEG 214 (702)
T ss_dssp EEEETTGGGGGCTTTHHHHHHHHHHHHHHCTTCEEEEEECCCTT-HHHHHH-HTTCEEE-ECCCC---SSCEEEEEECSS
T ss_pred EEEEeeeeecCCCCcccHHHHHHHHHHhcCcCceEEEECCCcCC-HHHHHH-HhCCCcc-cCCCC---CccceEEEeeCC
Confidence 99999999999988888888887766 467899999999986 344444 4433221 11111 11111110
Q ss_pred --eehhhH-------HHHHHHHHHhhcCCCCEEEEeCccccHHHHHHHHHHc----------------------------
Q 007814 375 --EYVKQE-------AKIVYLLECLQKTPPPVLIFCENKADVDDIHEYLLLK---------------------------- 417 (588)
Q Consensus 375 --~~~~~~-------~k~~~ll~~l~~~~~~viIF~~s~~~~~~l~~~L~~~---------------------------- 417 (588)
.+.... .....+.+.+ ..++++||||+++..++.++..|...
T Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~ 293 (702)
T 2p6r_A 215 TLELFDGAFSTSRRVKFEELVEECV-AENGGVLVFESTRRGAEKTAVKLSAITAKYVENEGLEKAILEENEGEMSRKLAE 293 (702)
T ss_dssp EEEEEETTEEEEEECCHHHHHHHHH-HTTCCEEEECSSHHHHHHHHHHHHHHHHTTCCCSSHHHHHHTTCCSHHHHHHHH
T ss_pred eeeccCcchhhhhhhhHHHHHHHHH-hcCCCEEEEcCCHHHHHHHHHHHHHHHHhhcChHHHHHHHHhhccccccHHHHH
Confidence 111100 0233333333 45789999999999999999998753
Q ss_pred --CCcEEEEeCCCCHHHHHHHHHHHhcCCcEEEEEcCccccCCCCCCcceEEe----cC---CCCChhHHHHHhcccccC
Q 007814 418 --GVEAVAVHGGKDQEEREYAISSFKAGKKDVLVATDVASKGLDFPDIQHVIN----YD---MPAEIENYVHRIGRTGRC 488 (588)
Q Consensus 418 --g~~~~~ihg~~~~~~R~~~~~~f~~g~~~vLVaT~~~~~GlDip~v~~VI~----~~---~p~s~~~y~qriGRagR~ 488 (588)
+..+..+||++++++|..+++.|++|+.+|||||+++++|+|+|++++||+ || .|.+..+|+||+|||||.
T Consensus 294 ~~~~~v~~~h~~l~~~~R~~v~~~f~~g~~~vlvaT~~l~~Gidip~~~~VI~~~~~yd~~~~~~s~~~~~Qr~GRaGR~ 373 (702)
T 2p6r_A 294 CVRKGAAFHHAGLLNGQRRVVEDAFRRGNIKVVVATPTLAAGVNLPARRVIVRSLYRFDGYSKRIKVSEYKQMAGRAGRP 373 (702)
T ss_dssp HHHTTCCEECTTSCHHHHHHHHHHHHTTSCCEEEECSTTTSSSCCCBSEEEECCSEEESSSEEECCHHHHHHHHTTBSCT
T ss_pred HHhcCeEEecCCCCHHHHHHHHHHHHCCCCeEEEECcHHhccCCCCceEEEEcCceeeCCCCCcCCHHHHHHHhhhcCCC
Confidence 235788999999999999999999999999999999999999999999999 66 789999999999999999
Q ss_pred C--CccEEEEEecCC
Q 007814 489 G--KTGIATTFINKN 501 (588)
Q Consensus 489 g--~~g~~~~~~~~~ 501 (588)
| ..|.|++++++.
T Consensus 374 g~~~~G~~~~l~~~~ 388 (702)
T 2p6r_A 374 GMDERGEAIIIVGKR 388 (702)
T ss_dssp TTCSCEEEEEECCGG
T ss_pred CCCCCceEEEEecCc
Confidence 8 578999998876
No 28
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.6e-44 Score=417.78 Aligned_cols=312 Identities=19% Similarity=0.241 Sum_probs=255.0
Q ss_pred CCCCCcHHHHHHHHHHhcCCCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEEEEEcCCHHHHHHHHHHHHH
Q 007814 162 GIVQPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFCLIVCPSRELARQTYEVVEQ 241 (588)
Q Consensus 162 g~~~p~~~Q~~~i~~il~g~dvii~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Q~~~~~~~ 241 (588)
+|. |+|+|.++++.+++|++++++||||||||++|.+|++..+. .++++||++||++|+.|+++.+.+
T Consensus 84 ~f~-L~~~Q~eai~~l~~g~~vLV~apTGSGKTlva~lai~~~l~-----------~g~rvL~l~PtkaLa~Q~~~~l~~ 151 (1010)
T 2xgj_A 84 PFT-LDPFQDTAISCIDRGESVLVSAHTSAGKTVVAEYAIAQSLK-----------NKQRVIYTSPIKALSNQKYRELLA 151 (1010)
T ss_dssp SSC-CCHHHHHHHHHHHHTCEEEEECCTTSCHHHHHHHHHHHHHH-----------TTCEEEEEESSHHHHHHHHHHHHH
T ss_pred CCC-CCHHHHHHHHHHHcCCCEEEECCCCCChHHHHHHHHHHHhc-----------cCCeEEEECChHHHHHHHHHHHHH
Confidence 664 99999999999999999999999999999999999887652 467999999999999999999999
Q ss_pred HhhcccccCCCCceEEEEEcCcchHHHHHHHhcCCcEEEeChHHHHHHHHcccCCCCCcceeEecCcccccccCcHHHHH
Q 007814 242 FLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMNLDNCRYLTLDEADRLVDLGFEDDIR 321 (588)
Q Consensus 242 ~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~L~~~l~~~~~~l~~~~~lViDEah~l~~~~~~~~i~ 321 (588)
++. ++.+++|+..... +++|+|+||++|.+++.+....+.++++|||||||++.+++++..+.
T Consensus 152 ~~~----------~vglltGd~~~~~-------~~~IvV~Tpe~L~~~L~~~~~~l~~l~lVViDEaH~l~d~~rg~~~e 214 (1010)
T 2xgj_A 152 EFG----------DVGLMTGDITINP-------DAGCLVMTTEILRSMLYRGSEVMREVAWVIFDEVHYMRDKERGVVWE 214 (1010)
T ss_dssp HHS----------CEEEECSSCEECT-------TCSEEEEEHHHHHHHHHHTCTTGGGEEEEEEETGGGGGCTTTHHHHH
T ss_pred HhC----------CEEEEeCCCccCC-------CCCEEEEcHHHHHHHHHcCcchhhcCCEEEEechhhhcccchhHHHH
Confidence 862 5777888876543 47999999999999998887888999999999999999999999999
Q ss_pred HHHHhhhhcceeEEEecccchHHH--HHHHHhcCCCeEEEecCCCCcccceEEEeeehh---------------------
Q 007814 322 EVFDHFKAQRQTLLFSATMPTKIQ--NFARSALVKPVTVNVGRAGAANLDVIQEVEYVK--------------------- 378 (588)
Q Consensus 322 ~i~~~~~~~~q~l~~SAT~~~~i~--~~~~~~l~~p~~i~~~~~~~~~~~~~~~~~~~~--------------------- 378 (588)
.++..++...|+++||||+|+... .++......+..+....... ..+.+.+....
T Consensus 215 ~il~~l~~~~~il~LSATi~n~~e~a~~l~~~~~~~~~vi~~~~rp--~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 292 (1010)
T 2xgj_A 215 ETIILLPDKVRYVFLSATIPNAMEFAEWICKIHSQPCHIVYTNFRP--TPLQHYLFPAHGDGIYLVVDEKSTFREENFQK 292 (1010)
T ss_dssp HHHHHSCTTCEEEEEECCCTTHHHHHHHHHHHHTSCEEEEEECCCS--SCEEEEEEETTSSCCEEEECTTCCBCHHHHHH
T ss_pred HHHHhcCCCCeEEEEcCCCCCHHHHHHHHHhhcCCCeEEEecCCCc--ccceEEEEecCCcceeeeeccccccchHHHHH
Confidence 999999999999999999987532 44444445555444332111 11111111000
Q ss_pred --------------------------h--------HHHHHHHHHHhhc-CCCCEEEEeCccccHHHHHHHHHHcCCc---
Q 007814 379 --------------------------Q--------EAKIVYLLECLQK-TPPPVLIFCENKADVDDIHEYLLLKGVE--- 420 (588)
Q Consensus 379 --------------------------~--------~~k~~~ll~~l~~-~~~~viIF~~s~~~~~~l~~~L~~~g~~--- 420 (588)
. ...+..++..+.. ...++||||+++..|+.++..|...++.
T Consensus 293 ~~~~l~~~~~~~~~~~~~~g~~~~~~k~~~~~~~~~~~l~~l~~~l~~~~~~~~IVF~~sr~~~e~la~~L~~~~~~~~~ 372 (1010)
T 2xgj_A 293 AMASISNQIGDDPNSTDSRGKKGQTYKGGSAKGDAKGDIYKIVKMIWKKKYNPVIVFSFSKRDCEELALKMSKLDFNSDD 372 (1010)
T ss_dssp HHHTCC------------------------------CHHHHHHHHHHHHTCCSEEEEESSHHHHHHHHHTTTTSCCCCHH
T ss_pred HHHHHhhhhcccccccccccccccccccccccccchHHHHHHHHHHHhcCCCCEEEEECCHHHHHHHHHHHHhCCCCChH
Confidence 0 1223445555544 3459999999999999999998764432
Q ss_pred ------------------------------------EEEEeCCCCHHHHHHHHHHHhcCCcEEEEEcCccccCCCCCCcc
Q 007814 421 ------------------------------------AVAVHGGKDQEEREYAISSFKAGKKDVLVATDVASKGLDFPDIQ 464 (588)
Q Consensus 421 ------------------------------------~~~ihg~~~~~~R~~~~~~f~~g~~~vLVaT~~~~~GlDip~v~ 464 (588)
+..+||+|++.+|..+++.|++|.++|||||+++++|||+|+++
T Consensus 373 e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gI~~~Hggl~~~eR~~ve~~F~~G~ikVLVAT~~la~GIDiP~~~ 452 (1010)
T 2xgj_A 373 EKEALTKIFNNAIALLPETDRELPQIKHILPLLRRGIGIHHSGLLPILKEVIEILFQEGFLKVLFATETFSIGLNMPAKT 452 (1010)
T ss_dssp HHHHHHHHHHHHHTTSCGGGTTCHHHHHHHHHHHHTEEEESTTSCHHHHHHHHHHHHTTCCSEEEEEGGGGGSTTCCBSE
T ss_pred HHHHHHHHHHHHHHhcchhhhcchhHHHHHHHHhCCeeEECCCCCHHHHHHHHHHHhcCCCcEEEEehHhhccCCCCCce
Confidence 78899999999999999999999999999999999999999999
Q ss_pred eEEe----cCC----CCChhHHHHHhcccccCCC--ccEEEEEecCCCCh
Q 007814 465 HVIN----YDM----PAEIENYVHRIGRTGRCGK--TGIATTFINKNQSE 504 (588)
Q Consensus 465 ~VI~----~~~----p~s~~~y~qriGRagR~g~--~g~~~~~~~~~~~~ 504 (588)
+||+ ||. |.++.+|+||+|||||.|. .|.+++|+++..+.
T Consensus 453 vVI~~~~kfd~~~~rp~s~~~y~Qr~GRAGR~G~d~~G~vi~l~~~~~e~ 502 (1010)
T 2xgj_A 453 VVFTSVRKWDGQQFRWVSGGEYIQMSGRAGRRGLDDRGIVIMMIDEKMEP 502 (1010)
T ss_dssp EEESCSEEECSSCEEECCHHHHHHHHTTBCCTTTCSSEEEEEEECSCCCH
T ss_pred EEEeCCcccCCcCCccCCHHHHhHhhhhcccCCCCCceEEEEEECCCCCH
Confidence 9999 999 8999999999999999997 59999999876443
No 29
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=100.00 E-value=4.4e-45 Score=418.09 Aligned_cols=327 Identities=17% Similarity=0.200 Sum_probs=207.8
Q ss_pred CCCCCCcHHHHHHHHHHhcCCCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEEEEEcCCHHHHHHHHHHHH
Q 007814 161 KGIVQPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFCLIVCPSRELARQTYEVVE 240 (588)
Q Consensus 161 ~g~~~p~~~Q~~~i~~il~g~dvii~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Q~~~~~~ 240 (588)
.|+..|+|+|.++++.+++|+|+|+++|||||||++|++|++..+.... .+.++++|||+||++|+.|+++.+.
T Consensus 244 ~g~~~l~~~Q~~~i~~~l~~~~~ll~~~TGsGKTl~~~~~i~~~l~~~~------~~~~~~~Lvl~Pt~~L~~Q~~~~~~ 317 (797)
T 4a2q_A 244 YETKKARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMP------AGRKAKVVFLATKVPVYEQQKNVFK 317 (797)
T ss_dssp ----CCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHTCC------SSCCCCEEEECSSHHHHHHHHHHHH
T ss_pred cCCCCCCHHHHHHHHHHHhCCCEEEEeCCCChHHHHHHHHHHHHHHhcc------ccCCCeEEEEeCCHHHHHHHHHHHH
Confidence 4788999999999999999999999999999999999999998876521 1237789999999999999999999
Q ss_pred HHhhcccccCCCCceEEEEEcCcchHHHHHHHhcCCcEEEeChHHHHHHHHcccC-CCCCcceeEecCcccccccCcHHH
Q 007814 241 QFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKM-NLDNCRYLTLDEADRLVDLGFEDD 319 (588)
Q Consensus 241 ~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~L~~~l~~~~~-~l~~~~~lViDEah~l~~~~~~~~ 319 (588)
+++... ++++..++|+.....+...+..+++|+|+||++|.+.+....+ .+..+++|||||||++.+.+....
T Consensus 318 ~~~~~~------~~~v~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~~iViDEaH~~~~~~~~~~ 391 (797)
T 4a2q_A 318 HHFERQ------GYSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHNTTGNHPYNV 391 (797)
T ss_dssp HHHGGG------TCCEEEECCC-----CHHHHHHTCSEEEECHHHHHHHHHSSSCCCGGGCSEEEETTGGGCSTTSHHHH
T ss_pred HhcccC------CceEEEEeCCcchhhhHHHhhCCCCEEEEchHHHHHHHHhccccccccCCEEEEECccccCCCccHHH
Confidence 998765 7899999999888777777778899999999999999988766 788999999999999998653222
Q ss_pred HH-HHHHhh----hhcceeEEEecccch-----------HHHHHHH------------------HhcCCCeEEEecCCCC
Q 007814 320 IR-EVFDHF----KAQRQTLLFSATMPT-----------KIQNFAR------------------SALVKPVTVNVGRAGA 365 (588)
Q Consensus 320 i~-~i~~~~----~~~~q~l~~SAT~~~-----------~i~~~~~------------------~~l~~p~~i~~~~~~~ 365 (588)
+. .++... ....|+++||||++. .+..+.. .++..|..........
T Consensus 392 i~~~~~~~~~~~~~~~~~~l~lSATp~~~~~~~~~~~~~~i~~l~~~L~~~~i~~~~~~~~~l~~~~~~~~~~~~~~~~~ 471 (797)
T 4a2q_A 392 LMTRYLEQKFNSASQLPQILGLTASVGVGNAKNIEETIEHICSLCSYLDIQAISTVRENIQELQRFMNKPEIDVRLVKRR 471 (797)
T ss_dssp HHHHHHHHHHTTCCCCCEEEEEESCCCCTTCCSHHHHHHHHHHHHHHHTCSEEECCCTTHHHHHHHSCCCCCEEEECCCC
T ss_pred HHHHHHHHhhccCCCCCeEEEEcCCccccccccHHHHHHHHHHHHHhcCCcEEecccccHHHHHHhcCCCceEEEecCCC
Confidence 22 222221 344789999999952 2222211 1112221111000000
Q ss_pred cccc------------------e--------EEEee--------ehh---------------------------------
Q 007814 366 ANLD------------------V--------IQEVE--------YVK--------------------------------- 378 (588)
Q Consensus 366 ~~~~------------------~--------~~~~~--------~~~--------------------------------- 378 (588)
.... + .+... ++.
T Consensus 472 ~~~~~~~~~~~l~~~i~~~~~~~~~l~~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~ 551 (797)
T 4a2q_A 472 IHNPFAAIISNLMSETEALMRTIYSVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLEDKEEESRICRALFICTEHLRK 551 (797)
T ss_dssp SCCHHHHHHHHHHHHHHHHHHHC------------CCSSHHHHHHHHHHHHHHHHCCCSSHHHHHHHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHhhHHhhhhccccccchhHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHH
Confidence 0000 0 00000 000
Q ss_pred -----------------------------------------------------------hHHHHHHHHHHhh-----cCC
Q 007814 379 -----------------------------------------------------------QEAKIVYLLECLQ-----KTP 394 (588)
Q Consensus 379 -----------------------------------------------------------~~~k~~~ll~~l~-----~~~ 394 (588)
...|+..|...+. ..+
T Consensus 552 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~K~~~L~~lL~~~~~~~~~ 631 (797)
T 4a2q_A 552 YNDALIISEDARIIDALSYLTEFFTNVKNGPYTELEQHLTAKFQEKEPELIALSKDETNENPKLEELVCILDDAYRYNPQ 631 (797)
T ss_dssp HHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHTTHHHHHHHHHCTTCCCHHHHHHHHHHHHHHHHCSS
T ss_pred HHHHHhhhccccHHHHHHHHHHHHHHHhccCccHHHHHHHHHHHHHHHHHHHhhcCCCCCChHHHHHHHHHHHHhccCCC
Confidence 0224444444443 346
Q ss_pred CCEEEEeCccccHHHHHHHHHHc------------CCcEEEEeCCCCHHHHHHHHHHHhc-CCcEEEEEcCccccCCCCC
Q 007814 395 PPVLIFCENKADVDDIHEYLLLK------------GVEAVAVHGGKDQEEREYAISSFKA-GKKDVLVATDVASKGLDFP 461 (588)
Q Consensus 395 ~~viIF~~s~~~~~~l~~~L~~~------------g~~~~~ihg~~~~~~R~~~~~~f~~-g~~~vLVaT~~~~~GlDip 461 (588)
.++||||+++..++.++++|... |..+..+||+|++.+|..+++.|++ |+++|||||+++++|||+|
T Consensus 632 ~kvLIF~~~~~~~~~L~~~L~~~~~~~~~~~~~l~G~~~~~~hg~~~~~eR~~~l~~F~~~g~~~vLVaT~~~~~GIDlp 711 (797)
T 4a2q_A 632 TRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATSVADEGIDIV 711 (797)
T ss_dssp CCEEEEESSHHHHHHHHHHHHTCSTTCSCCCEEC----------------------------CCSEEEEECC-------C
T ss_pred CeEEEEECcHHHHHHHHHHHHhCcccccccceEEEecCCcccCCCCCHHHHHHHHHHhhccCCceEEEEcCchhcCCCch
Confidence 79999999999999999999873 6667778999999999999999999 9999999999999999999
Q ss_pred CcceEEecCCCCChhHHHHHhcccccCCCccEEEEEecCC
Q 007814 462 DIQHVINYDMPAEIENYVHRIGRTGRCGKTGIATTFINKN 501 (588)
Q Consensus 462 ~v~~VI~~~~p~s~~~y~qriGRagR~g~~g~~~~~~~~~ 501 (588)
++++||+||+|+|+..|+||+|| ||. +.|.+++|++..
T Consensus 712 ~v~~VI~yd~p~s~~~~iQr~GR-GR~-~~g~~i~l~~~~ 749 (797)
T 4a2q_A 712 QCNLVVLYEYSGNVTKMIQVRGR-GRA-AGSKCILVTSKT 749 (797)
T ss_dssp CCSEEEEESCCSCHHHHHTC---------CCCEEEEECCH
T ss_pred hCCEEEEeCCCCCHHHHHHhcCC-CCC-CCceEEEEEeCC
Confidence 99999999999999999999999 999 899999999876
No 30
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A*
Probab=100.00 E-value=4e-45 Score=401.34 Aligned_cols=317 Identities=19% Similarity=0.239 Sum_probs=229.9
Q ss_pred CCCCCcHHHHHHHHHHhcCCCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEEEEEcCCHHHHHHHHHHHHH
Q 007814 162 GIVQPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFCLIVCPSRELARQTYEVVEQ 241 (588)
Q Consensus 162 g~~~p~~~Q~~~i~~il~g~dvii~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Q~~~~~~~ 241 (588)
|. .|+|+|..++|.++.|+ |+.|+||||||++|.+|++...+ .|+.++||+||++||.|+++.+..
T Consensus 72 g~-~p~~VQ~~~i~~ll~G~--Iaem~TGsGKTlaf~LP~l~~~l-----------~g~~vlVltPTreLA~Q~~e~~~~ 137 (853)
T 2fsf_A 72 GM-RHFDVQLLGGMVLNERC--IAEMRTGEGKTLTATLPAYLNAL-----------TGKGVHVVTVNDYLAQRDAENNRP 137 (853)
T ss_dssp SC-CCCHHHHHHHHHHHSSE--EEECCTTSCHHHHHHHHHHHHHT-----------TSSCCEEEESSHHHHHHHHHHHHH
T ss_pred CC-CCChHHHhhcccccCCe--eeeecCCchHHHHHHHHHHHHHH-----------cCCcEEEEcCCHHHHHHHHHHHHH
Confidence 64 89999999999999998 99999999999999999986542 356799999999999999999999
Q ss_pred HhhcccccCCCCceEEEEEcCcchHHHHHHHhcCCcEEEeChHHH-HHHHHcc------cCCCCCcceeEecCccccc-c
Q 007814 242 FLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRL-KDMLAKK------KMNLDNCRYLTLDEADRLV-D 313 (588)
Q Consensus 242 ~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~L-~~~l~~~------~~~l~~~~~lViDEah~l~-~ 313 (588)
++..+ ++++.+++||.+... ..+..+++|+|+||++| .|+|..+ .+.++.+.++|+||||+|+ +
T Consensus 138 l~~~l------gl~v~~i~GG~~~~~--r~~~~~~dIvvgTpgrl~fDyLrd~~~~~~~~~~~~~l~~lVlDEaD~mLiD 209 (853)
T 2fsf_A 138 LFEFL------GLTVGINLPGMPAPA--KREAYAADITYGTNNEYGFDYLRDNMAFSPEERVQRKLHYALVDEVDSILID 209 (853)
T ss_dssp HHHHT------TCCEEECCTTCCHHH--HHHHHHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCSCCEEEESCHHHHTTT
T ss_pred HHHhc------CCeEEEEeCCCCHHH--HHHhcCCCEEEECCchhhHHHHHhhhhccHhHhcccCCcEEEECchHHHHHh
Confidence 98877 899999999987643 34445799999999999 7888754 3567899999999999998 5
Q ss_pred cC---------------cHHHHHHHHHhhhh--------------------cceeE------------------------
Q 007814 314 LG---------------FEDDIREVFDHFKA--------------------QRQTL------------------------ 334 (588)
Q Consensus 314 ~~---------------~~~~i~~i~~~~~~--------------------~~q~l------------------------ 334 (588)
++ |...+..++..++. .+|++
T Consensus 210 ~a~tpLIiSg~~~~~~~~y~~i~~iv~~L~~~~~~~~~~~~~~~dy~vdek~rqv~lte~g~~~~e~~l~~~~l~~~~~~ 289 (853)
T 2fsf_A 210 EARTPLIISGPAEDSSEMYKRVNKIIPHLIRQEKEDSETFQGEGHFSVDEKSRQVNLTERGLVLIEELLVKEGIMDEGES 289 (853)
T ss_dssp TTTCEEEEEEC---------------------------------------------------------------------
T ss_pred cCcccccccCCCccchhHHHHHHHHHHhchhhhccccccccccccceeccccceEEEcHHHHHHHHHHHHhCCccccccc
Confidence 53 56788888888864 45654
Q ss_pred EEecccchHHHHH---H--HHhcC--------C-------------------------C----eEEEecCCCCcccceE-
Q 007814 335 LFSATMPTKIQNF---A--RSALV--------K-------------------------P----VTVNVGRAGAANLDVI- 371 (588)
Q Consensus 335 ~~SAT~~~~i~~~---~--~~~l~--------~-------------------------p----~~i~~~~~~~~~~~~~- 371 (588)
+||||++..+..+ + ..++. + + ..+.+.........+.
T Consensus 290 Lfsat~~~~~~~i~~al~A~~l~~~d~dYiV~d~~vviVde~tgR~m~grr~sdGLhQaieake~v~I~~e~~tla~It~ 369 (853)
T 2fsf_A 290 LYSPANIMLMHHVTAALRAHALFTRDVDYIVKDGEVIIVDEHTGRTMQGRRWSDGLHQAVEAKEGVQIQNENQTLASITF 369 (853)
T ss_dssp -------------------------------------------------------------------CCCCCEEEEEEEH
T ss_pred ccCcccchHHHHHHHHHHHHHHhhcCccceeecCcEEEEecccCcccCCCccchhhhHHHHhcccceecccccccceeeh
Confidence 8999986522211 1 11110 0 0 0111111111101111
Q ss_pred ----------------------------------------------EEeeehhhHHHHHHHHHHhh---cCCCCEEEEeC
Q 007814 372 ----------------------------------------------QEVEYVKQEAKIVYLLECLQ---KTPPPVLIFCE 402 (588)
Q Consensus 372 ----------------------------------------------~~~~~~~~~~k~~~ll~~l~---~~~~~viIF~~ 402 (588)
+.+.+.....|+..++..+. ..+.|+||||+
T Consensus 370 qnyfr~Y~kl~GmTGTa~te~~ef~~iY~l~vv~IPtn~p~~R~d~~d~v~~~~~~K~~al~~~i~~~~~~gqpvLVft~ 449 (853)
T 2fsf_A 370 QNYFRLYEKLAGMTGTADTEAFEFSSIYKLDTVVVPTNRPMIRKDLPDLVYMTEAEKIQAIIEDIKERTAKGQPVLVGTI 449 (853)
T ss_dssp HHHHTTSSEEEEEECTTCCCHHHHHHHHCCEEEECCCSSCCCCEECCCEEESSHHHHHHHHHHHHHHHHTTTCCEEEEES
T ss_pred HHHHhhhhhhhcCCCCchhHHHHHHHHhCCcEEEcCCCCCceeecCCcEEEeCHHHHHHHHHHHHHHHhcCCCCEEEEEC
Confidence 11234566778877777664 35779999999
Q ss_pred ccccHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhcCCcEEEEEcCccccCCCCCCc-------------------
Q 007814 403 NKADVDDIHEYLLLKGVEAVAVHGGKDQEEREYAISSFKAGKKDVLVATDVASKGLDFPDI------------------- 463 (588)
Q Consensus 403 s~~~~~~l~~~L~~~g~~~~~ihg~~~~~~R~~~~~~f~~g~~~vLVaT~~~~~GlDip~v------------------- 463 (588)
|+..++.++..|...|+++.++||++.+.++..+.+.|+.| .|+|||++++||+||+..
T Consensus 450 sie~se~Ls~~L~~~gi~~~vLnak~~~rEa~iia~agr~G--~VtIATnmAgRGtDI~l~gn~~~~~~~~~~~~~~~~~ 527 (853)
T 2fsf_A 450 SIEKSELVSNELTKAGIKHNVLNAKFHANEAAIVAQAGYPA--AVTIATNMAGRGTDIVLGGSWQAEVAALENPTAEQIE 527 (853)
T ss_dssp SHHHHHHHHHHHHHTTCCCEECCTTCHHHHHHHHHTTTSTT--CEEEEESCCSSCSCCCTTCCHHHHHHHCSSCCSSHHH
T ss_pred cHHHHHHHHHHHHHCCCCEEEecCChhHHHHHHHHhcCCCC--eEEEecccccCCcCccCCCchHhhhhhcccchhHHHH
Confidence 99999999999999999999999999988888888889988 699999999999999974
Q ss_pred ------------------ceEEecCCCCChhHHHHHhcccccCCCccEEEEEecCCC
Q 007814 464 ------------------QHVINYDMPAEIENYVHRIGRTGRCGKTGIATTFINKNQ 502 (588)
Q Consensus 464 ------------------~~VI~~~~p~s~~~y~qriGRagR~g~~g~~~~~~~~~~ 502 (588)
.|||+|++|.|...|.||+|||||.|.+|.+++|++..+
T Consensus 528 ~~~~~~~~~~~~V~~~GGl~VI~te~pes~riy~qr~GRTGRqGd~G~s~~fls~eD 584 (853)
T 2fsf_A 528 KIKADWQVRHDAVLEAGGLHIIGTERHESRRIDNQLRGRSGRQGDAGSSRFYLSMED 584 (853)
T ss_dssp HHHHHHHHHHHHHHHTTSEEEEESSCCSSHHHHHHHHTTSSGGGCCEEEEEEEETTS
T ss_pred HHHHHhhhhhhHHHhcCCcEEEEccCCCCHHHHHhhccccccCCCCeeEEEEecccH
Confidence 599999999999999999999999999999999998774
No 31
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=100.00 E-value=5.9e-46 Score=433.39 Aligned_cols=324 Identities=19% Similarity=0.292 Sum_probs=257.0
Q ss_pred HHHHH-CCCCCCcHHHHHHHHHHhcCCCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEEEEEcCCHHHHHH
Q 007814 156 KKLKA-KGIVQPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFCLIVCPSRELARQ 234 (588)
Q Consensus 156 ~~l~~-~g~~~p~~~Q~~~i~~il~g~dvii~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Q 234 (588)
+.+.+ .||. | |+|.++|+.++.|+|++++||||||||+ |.+|++..+.. .++++|||+||++||.|
T Consensus 48 ~~~~~~~g~~-p-~iQ~~ai~~il~g~dvlv~apTGSGKTl-~~lp~l~~~~~----------~~~~~lil~PtreLa~Q 114 (1054)
T 1gku_B 48 EFFRKCVGEP-R-AIQKMWAKRILRKESFAATAPTGVGKTS-FGLAMSLFLAL----------KGKRCYVIFPTSLLVIQ 114 (1054)
T ss_dssp HHHHTTTCSC-C-HHHHHHHHHHHTTCCEECCCCBTSCSHH-HHHHHHHHHHT----------TSCCEEEEESCHHHHHH
T ss_pred HHHHHhcCCC-H-HHHHHHHHHHHhCCCEEEEcCCCCCHHH-HHHHHHHHHhh----------cCCeEEEEeccHHHHHH
Confidence 45555 5999 9 9999999999999999999999999998 89999877654 47889999999999999
Q ss_pred HHHHHHHHhhcccccCCCCc----eEEEEEcCcchHHH---HHHHhcCCcEEEeChHHHHHHHHcccCCCCCcceeEecC
Q 007814 235 TYEVVEQFLTPMRDAGYPDL----RTLLCIGGVDMRSQ---LEVVKRGVHIVVATPGRLKDMLAKKKMNLDNCRYLTLDE 307 (588)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~i----~~~~~~gg~~~~~~---~~~l~~~~~IvV~Tp~~L~~~l~~~~~~l~~~~~lViDE 307 (588)
+++.+.+++..+ ++ ++..++||.+...+ ...+.+ ++|+|+||++|.+++.+ ++.+++|||||
T Consensus 115 ~~~~l~~l~~~~------~i~~~~~v~~~~Gg~~~~~~~~~~~~l~~-~~IlV~TP~~L~~~l~~----L~~l~~lViDE 183 (1054)
T 1gku_B 115 AAETIRKYAEKA------GVGTENLIGYYHGRIPKREKENFMQNLRN-FKIVITTTQFLSKHYRE----LGHFDFIFVDD 183 (1054)
T ss_dssp HHHHHHHHHTTT------CCSGGGSEEECCSSCCSHHHHHHHHSGGG-CSEEEEEHHHHHHCSTT----SCCCSEEEESC
T ss_pred HHHHHHHHHhhc------CCCccceEEEEeCCCChhhHHHHHhhccC-CCEEEEcHHHHHHHHHH----hccCCEEEEeC
Confidence 999999998755 56 89999999887764 334455 99999999999887654 67899999999
Q ss_pred cccccccCcHHHHHHHHHhhh-----------hcceeEEEecccchHHHHHHHHhcCCCeEEEecCCCCcccceEEEeee
Q 007814 308 ADRLVDLGFEDDIREVFDHFK-----------AQRQTLLFSATMPTKIQNFARSALVKPVTVNVGRAGAANLDVIQEVEY 376 (588)
Q Consensus 308 ah~l~~~~~~~~i~~i~~~~~-----------~~~q~l~~SAT~~~~i~~~~~~~l~~p~~i~~~~~~~~~~~~~~~~~~ 376 (588)
||+|+++ ...++.++..++ ..+|+++||||++.. ..+...++..+..+.+........++.+.+.
T Consensus 184 ah~~l~~--~~~~~~i~~~lgf~~~~~~~~~~~~~q~~l~SAT~t~~-~~~~~~~~~~~~~i~v~~~~~~~~~i~~~~~- 259 (1054)
T 1gku_B 184 VDAILKA--SKNVDKLLHLLGFHYDLKTKSWVGEARGCLMVSTATAK-KGKKAELFRQLLNFDIGSSRITVRNVEDVAV- 259 (1054)
T ss_dssp HHHHHTS--THHHHHHHHHTTEEEETTTTEEEECCSSEEEECCCCSC-CCTTHHHHHHHHCCCCSCCEECCCCEEEEEE-
T ss_pred hhhhhhc--cccHHHHHHHhCcchhhhhhhcccCCceEEEEecCCCc-hhHHHHHhhcceEEEccCcccCcCCceEEEe-
Confidence 9999994 488888888773 457899999999887 5333333333333333333333344444443
Q ss_pred hhhHHHHHHHHHHhhcCCCCEEEEeCccccHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhcCCcEEEEE----cC
Q 007814 377 VKQEAKIVYLLECLQKTPPPVLIFCENKADVDDIHEYLLLKGVEAVAVHGGKDQEEREYAISSFKAGKKDVLVA----TD 452 (588)
Q Consensus 377 ~~~~~k~~~ll~~l~~~~~~viIF~~s~~~~~~l~~~L~~~g~~~~~ihg~~~~~~R~~~~~~f~~g~~~vLVa----T~ 452 (588)
...+...+...+...++++||||+++..|+.+++.|... +.+..+||++. .+++.|++|+.+|||| |+
T Consensus 260 --~~~k~~~L~~ll~~~~~~~LVF~~t~~~a~~l~~~L~~~-~~v~~lhg~~~-----~~l~~F~~G~~~VLVaTas~Td 331 (1054)
T 1gku_B 260 --NDESISTLSSILEKLGTGGIIYARTGEEAEEIYESLKNK-FRIGIVTATKK-----GDYEKFVEGEIDHLIGTAHYYG 331 (1054)
T ss_dssp --SCCCTTTTHHHHTTSCSCEEEEESSHHHHHHHHHTTTTS-SCEEECTTSSS-----HHHHHHHHTSCSEEEEECC---
T ss_pred --chhHHHHHHHHHhhcCCCEEEEEcCHHHHHHHHHHHhhc-cCeeEEeccHH-----HHHHHHHcCCCcEEEEecCCCC
Confidence 233444455666666789999999999999999999888 99999999984 6789999999999999 99
Q ss_pred ccccCCCCCCc-ceEEecCCC-----------------------------------------------------------
Q 007814 453 VASKGLDFPDI-QHVINYDMP----------------------------------------------------------- 472 (588)
Q Consensus 453 ~~~~GlDip~v-~~VI~~~~p----------------------------------------------------------- 472 (588)
++++|||+|+| ++||+||+|
T Consensus 332 v~~rGIDip~VI~~VI~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 411 (1054)
T 1gku_B 332 TLVRGLDLPERIRFAVFVGCPSFRVTIEDIDSLSPQMVKLLAYLYRNVDEIERLLPAVERHIDEVREILKKVMGKERPQA 411 (1054)
T ss_dssp ---CCSCCTTTCCEEEEESCCEEEEECSCGGGSCHHHHHHHHTTTSCHHHHHTTCTTTSSCHHHHHHHHHHHHTTSCCSC
T ss_pred eeEeccccCCcccEEEEeCCCcccccccccccChHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhccccccc
Confidence 99999999996 999999999
Q ss_pred ------------CChhHHHHHhcccccCCCccE--EEEEecCCCChhHHHHHHHHHHH
Q 007814 473 ------------AEIENYVHRIGRTGRCGKTGI--ATTFINKNQSETTLLDLKHLLQE 516 (588)
Q Consensus 473 ------------~s~~~y~qriGRagR~g~~g~--~~~~~~~~~~~~~~~~l~~~l~~ 516 (588)
.|..+|+||+|||||.|..|. +++|+..+ +...+..|.+.+..
T Consensus 412 ~~~~~~~~~~~~~~~~~yiQr~GRagR~g~~g~~~g~~~~~~~-d~~~~~~l~~~l~~ 468 (1054)
T 1gku_B 412 KDVVVREGEVIFPDLRTYIQGSGRTSRLFAGGLTKGASFLLED-DSELLSAFIERAKL 468 (1054)
T ss_dssp SSSEEETTEEEEECHHHHHHHHHTTCCEETTEECCEEEEEECS-CHHHHHHHHHHHHT
T ss_pred cceeEeecceecCcHHHHhhhhchhhhccCCCCceEEEEEEec-CHHHHHHHHHHHhh
Confidence 789999999999999887764 78888776 56666677666653
No 32
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=100.00 E-value=3e-43 Score=379.96 Aligned_cols=319 Identities=21% Similarity=0.294 Sum_probs=248.2
Q ss_pred CCcHHHHHHHHHHhcCCCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEEEEEcCCHHHHHHHHHHHHHHhh
Q 007814 165 QPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFCLIVCPSRELARQTYEVVEQFLT 244 (588)
Q Consensus 165 ~p~~~Q~~~i~~il~g~dvii~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Q~~~~~~~~~~ 244 (588)
.|+|+|.++++.++.+ ++++.+|||+|||++++++++..+.. .+.++|||||+++|+.|+.+.+.+++.
T Consensus 9 ~l~~~Q~~~i~~~~~~-~~ll~~~tG~GKT~~~~~~~~~~~~~----------~~~~~liv~P~~~L~~q~~~~~~~~~~ 77 (494)
T 1wp9_A 9 QPRIYQEVIYAKCKET-NCLIVLPTGLGKTLIAMMIAEYRLTK----------YGGKVLMLAPTKPLVLQHAESFRRLFN 77 (494)
T ss_dssp CCCHHHHHHHHHGGGS-CEEEECCTTSCHHHHHHHHHHHHHHH----------SCSCEEEECSSHHHHHHHHHHHHHHBC
T ss_pred CccHHHHHHHHHHhhC-CEEEEcCCCCCHHHHHHHHHHHHHhc----------CCCeEEEEECCHHHHHHHHHHHHHHhC
Confidence 6999999999999999 99999999999999999999877642 467899999999999999999999863
Q ss_pred cccccCCCCceEEEEEcCcchHHHHHHHhcCCcEEEeChHHHHHHHHcccCCCCCcceeEecCcccccccCcHHHHHHHH
Q 007814 245 PMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMNLDNCRYLTLDEADRLVDLGFEDDIREVF 324 (588)
Q Consensus 245 ~~~~~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~L~~~l~~~~~~l~~~~~lViDEah~l~~~~~~~~i~~i~ 324 (588)
.+..++..++|+.......... .+++|+|+||+.|...+....+.+..+++||+||||++.+......+...+
T Consensus 78 ------~~~~~v~~~~g~~~~~~~~~~~-~~~~ivv~T~~~l~~~~~~~~~~~~~~~~vIiDEaH~~~~~~~~~~~~~~~ 150 (494)
T 1wp9_A 78 ------LPPEKIVALTGEKSPEERSKAW-ARAKVIVATPQTIENDLLAGRISLEDVSLIVFDEAHRAVGNYAYVFIAREY 150 (494)
T ss_dssp ------SCGGGEEEECSCSCHHHHHHHH-HHCSEEEECHHHHHHHHHTTSCCTTSCSEEEEETGGGCSTTCHHHHHHHHH
T ss_pred ------cchhheEEeeCCcchhhhhhhc-cCCCEEEecHHHHHHHHhcCCcchhhceEEEEECCcccCCCCcHHHHHHHH
Confidence 2356889999987766543333 357999999999999988888888999999999999998765445555555
Q ss_pred HhhhhcceeEEEecccchH---HHHHHHHhcCCCeEEEecCCCCc-----ccceEEE-e---------------------
Q 007814 325 DHFKAQRQTLLFSATMPTK---IQNFARSALVKPVTVNVGRAGAA-----NLDVIQE-V--------------------- 374 (588)
Q Consensus 325 ~~~~~~~q~l~~SAT~~~~---i~~~~~~~l~~p~~i~~~~~~~~-----~~~~~~~-~--------------------- 374 (588)
.......+++++|||++.. +..+...+......+........ ....... .
T Consensus 151 ~~~~~~~~~l~lTaTp~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (494)
T 1wp9_A 151 KRQAKNPLVIGLTASPGSTPEKIMEVINNLGIEHIEYRSENSPDVRPYVKGIRFEWVRVDLPEIYKEVRKLLREMLRDAL 230 (494)
T ss_dssp HHHCSSCCEEEEESCSCSSHHHHHHHHHHTTCCEEEECCTTSTTTGGGCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHH
T ss_pred HhcCCCCeEEEEecCCCCCcHHHHHHHHhcChheeeccCCCcHHHHHhcCCCceeEEecCCcHHHHHHHHHHHHHHHHHH
Confidence 5556678899999999743 33333333222111110000000 0000000 0
Q ss_pred --------------------------------------------------------------------eeh---------
Q 007814 375 --------------------------------------------------------------------EYV--------- 377 (588)
Q Consensus 375 --------------------------------------------------------------------~~~--------- 377 (588)
.+.
T Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 310 (494)
T 1wp9_A 231 KPLAETGLLESSSPDIPKKEVLRAGQIINEEMAKGNHDLRGLLLYHAMALKLHHAIELLETQGLSALRAYIKKLYEEAKA 310 (494)
T ss_dssp HHHHHHTSSSCCCTTSCHHHHHHHHHHHHHHHTTTCCSTTTHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHhccccccCCCcchhHHHHHHHHHHHHhhccccchhhHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhhcc
Confidence 000
Q ss_pred -----------------------------hhHHHHHHHHHHhhc-----CCCCEEEEeCccccHHHHHHHHHHcCCcEEE
Q 007814 378 -----------------------------KQEAKIVYLLECLQK-----TPPPVLIFCENKADVDDIHEYLLLKGVEAVA 423 (588)
Q Consensus 378 -----------------------------~~~~k~~~ll~~l~~-----~~~~viIF~~s~~~~~~l~~~L~~~g~~~~~ 423 (588)
....|+..+.+.+.. .+.++||||+++..++.+++.|...|+.+..
T Consensus 311 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~ 390 (494)
T 1wp9_A 311 GSTKASKEIFSDKRMKKAISLLVQAKEIGLDHPKMDKLKEIIREQLQRKQNSKIIVFTNYRETAKKIVNELVKDGIKAKR 390 (494)
T ss_dssp TCCHHHHHHHTSHHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHCTTCCEEEECSCHHHHHHHHHHHHHTTCCEEE
T ss_pred ccchhhhhhhhhHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhccCCCCeEEEEEccHHHHHHHHHHHHHcCCCcEE
Confidence 111234444444433 5779999999999999999999999999999
Q ss_pred EeC--------CCCHHHHHHHHHHHhcCCcEEEEEcCccccCCCCCCcceEEecCCCCChhHHHHHhcccccCCCccEEE
Q 007814 424 VHG--------GKDQEEREYAISSFKAGKKDVLVATDVASKGLDFPDIQHVINYDMPAEIENYVHRIGRTGRCGKTGIAT 495 (588)
Q Consensus 424 ihg--------~~~~~~R~~~~~~f~~g~~~vLVaT~~~~~GlDip~v~~VI~~~~p~s~~~y~qriGRagR~g~~g~~~ 495 (588)
+|| +++..+|..+++.|++|+.+|||||+++++|+|+|++++||+||+|+++..|+||+||+||.|+ |.++
T Consensus 391 ~~g~~~~~~~~~~~~~~r~~~~~~F~~~~~~vLv~T~~~~~Gldl~~~~~Vi~~d~~~~~~~~~Qr~GR~~R~g~-g~~~ 469 (494)
T 1wp9_A 391 FVGQASKENDRGLSQREQKLILDEFARGEFNVLVATSVGEEGLDVPEVDLVVFYEPVPSAIRSIQRRGRTGRHMP-GRVI 469 (494)
T ss_dssp ECCSSCC-------CCHHHHHHHHHHHTSCSEEEECGGGGGGGGSTTCCEEEESSCCHHHHHHHHHHTTSCSCCC-SEEE
T ss_pred EeccccccccccCCHHHHHHHHHHHhcCCceEEEECCccccCCCchhCCEEEEeCCCCCHHHHHHHHhhccCCCC-ceEE
Confidence 999 9999999999999999999999999999999999999999999999999999999999999998 9999
Q ss_pred EEecCCC
Q 007814 496 TFINKNQ 502 (588)
Q Consensus 496 ~~~~~~~ 502 (588)
.|+.++.
T Consensus 470 ~l~~~~t 476 (494)
T 1wp9_A 470 ILMAKGT 476 (494)
T ss_dssp EEEETTS
T ss_pred EEEecCC
Confidence 9999874
No 33
>1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A
Probab=100.00 E-value=4.6e-44 Score=393.08 Aligned_cols=318 Identities=19% Similarity=0.243 Sum_probs=255.3
Q ss_pred CCCCCCcHHHHHHHHHHhcCCCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEEEEEcCCHHHHHHHHHHHH
Q 007814 161 KGIVQPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFCLIVCPSRELARQTYEVVE 240 (588)
Q Consensus 161 ~g~~~p~~~Q~~~i~~il~g~dvii~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Q~~~~~~ 240 (588)
.|+ .||++|..++|.++.|+ |+.++||+|||++|.+|++...+ .|..++||+||++||.|.++.+.
T Consensus 108 lG~-rP~~VQ~~~ip~Ll~G~--Iaem~TGeGKTLa~~LP~~l~aL-----------~g~~v~VvTpTreLA~Qdae~m~ 173 (922)
T 1nkt_A 108 LDQ-RPFDVQVMGAAALHLGN--VAEMKTGEGKTLTCVLPAYLNAL-----------AGNGVHIVTVNDYLAKRDSEWMG 173 (922)
T ss_dssp HSC-CCCHHHHHHHHHHHTTE--EEECCTTSCHHHHTHHHHHHHHT-----------TTSCEEEEESSHHHHHHHHHHHH
T ss_pred cCC-CCCHHHHHHHHhHhcCC--EEEecCCCccHHHHHHHHHHHHH-----------hCCCeEEEeCCHHHHHHHHHHHH
Confidence 488 99999999999999998 99999999999999999976543 25579999999999999999999
Q ss_pred HHhhcccccCCCCceEEEEEcCcchHHHHHHHhcCCcEEEeChHHH-HHHHHcc------cCCCCCcceeEecCccccc-
Q 007814 241 QFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRL-KDMLAKK------KMNLDNCRYLTLDEADRLV- 312 (588)
Q Consensus 241 ~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~L-~~~l~~~------~~~l~~~~~lViDEah~l~- 312 (588)
.++..+ ++++.+++||.+...+ ....+++|+|+||++| .|+|..+ .+.++.+.++||||||+|+
T Consensus 174 ~l~~~l------GLsv~~i~gg~~~~~r--~~~y~~DIvygTpgrlgfDyLrD~m~~~~~~l~lr~l~~lIVDEaDsmLi 245 (922)
T 1nkt_A 174 RVHRFL------GLQVGVILATMTPDER--RVAYNADITYGTNNEFGFDYLRDNMAHSLDDLVQRGHHYAIVDEVDSILI 245 (922)
T ss_dssp HHHHHT------TCCEEECCTTCCHHHH--HHHHHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCCCCEEEETTHHHHHT
T ss_pred HHHhhc------CCeEEEEeCCCCHHHH--HHhcCCCEEEECchHhhHHHHHhhhhccHhhhccCCCCEEEEeChHHHHH
Confidence 998877 8999999999876443 3334689999999999 7888654 4668899999999999998
Q ss_pred cc---------------CcHHHHHHHHHhhh---------hcceeE-----------------EEecccchH---HHHHH
Q 007814 313 DL---------------GFEDDIREVFDHFK---------AQRQTL-----------------LFSATMPTK---IQNFA 348 (588)
Q Consensus 313 ~~---------------~~~~~i~~i~~~~~---------~~~q~l-----------------~~SAT~~~~---i~~~~ 348 (588)
|+ +|...+..++..++ ..+|++ +||||++.- +...+
T Consensus 246 DeartPLiiSg~~~~~~~~y~~i~~iv~~L~~~~dy~vDek~rqv~Lte~G~~~~e~~l~i~~Lfsat~~~l~~~i~~aL 325 (922)
T 1nkt_A 246 DEARTPLIISGPADGASNWYTEFARLAPLMEKDVHYEVDLRKRTVGVHEKGVEFVEDQLGIDNLYEAANSPLVSYLNNAL 325 (922)
T ss_dssp TGGGSCEEEEEECCCCHHHHHHHHHHHHHSCBTTTEEEETTTTEEEECHHHHHHHHHHHTCSSTTCSTTCCHHHHHHHHH
T ss_pred hcCccceeecCCCCcchhHHHHHHHHHHhCcccccceeccCcceEEecHhHHHHHHHHhCCccccCCcchhHHHHHHHHH
Confidence 43 57789999999997 678998 999998753 33222
Q ss_pred --HHhcC-C-------CeEEEecCC-CC----------------------------cccceE------------------
Q 007814 349 --RSALV-K-------PVTVNVGRA-GA----------------------------ANLDVI------------------ 371 (588)
Q Consensus 349 --~~~l~-~-------p~~i~~~~~-~~----------------------------~~~~~~------------------ 371 (588)
..++. + ...+.+... +. ....+.
T Consensus 326 ~A~~l~~~d~dYiV~dg~vviVDe~TGR~m~grr~sdGLHQaieaKe~V~I~~e~~TlatIt~Qnyfr~Y~kL~GMTGTa 405 (922)
T 1nkt_A 326 KAKELFSRDKDYIVRDGEVLIVDEFTGRVLIGRRYNEGMHQAIEAKEHVEIKAENQTLATITLQNYFRLYDKLAGMTGTA 405 (922)
T ss_dssp HHHHHCCBTTTEEECSSCEEEBCSSSCCBCTTCCCSTTHHHHHHHHTTCCCCCCEEEEEEECHHHHHTTSSEEEEEESCC
T ss_pred HHHHHhhcccceeeecCceEEEecccCcccCCccccchhhHHHhccccccccccccccceeehHHHHHhhhhhhccccCc
Confidence 12221 1 111111100 00 000000
Q ss_pred -----------------------------EEeeehhhHHHHHHHHHHhh---cCCCCEEEEeCccccHHHHHHHHHHcCC
Q 007814 372 -----------------------------QEVEYVKQEAKIVYLLECLQ---KTPPPVLIFCENKADVDDIHEYLLLKGV 419 (588)
Q Consensus 372 -----------------------------~~~~~~~~~~k~~~ll~~l~---~~~~~viIF~~s~~~~~~l~~~L~~~g~ 419 (588)
..+.+.....|+..++..+. ..+.|+||||+|+..++.++..|...|+
T Consensus 406 ~te~~Ef~~iY~l~vv~IPtn~p~~R~d~~d~v~~t~~~K~~al~~~i~~~~~~gqpvLVft~Sie~sE~Ls~~L~~~Gi 485 (922)
T 1nkt_A 406 QTEAAELHEIYKLGVVSIPTNMPMIREDQSDLIYKTEEAKYIAVVDDVAERYAKGQPVLIGTTSVERSEYLSRQFTKRRI 485 (922)
T ss_dssp GGGHHHHHHHHCCEEEECCCSSCCCCEECCCEEESCHHHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHTTC
T ss_pred hhHHHHHHHHhCCCeEEeCCCCCcccccCCcEEEeCHHHHHHHHHHHHHHHHhcCCcEEEEECCHHHHHHHHHHHHHCCC
Confidence 11234456677777777664 3567999999999999999999999999
Q ss_pred cEEEEeCCCCHHHHHHHHHHHhcCCcEEEEEcCccccCCCCCCc------------------------------------
Q 007814 420 EAVAVHGGKDQEEREYAISSFKAGKKDVLVATDVASKGLDFPDI------------------------------------ 463 (588)
Q Consensus 420 ~~~~ihg~~~~~~R~~~~~~f~~g~~~vLVaT~~~~~GlDip~v------------------------------------ 463 (588)
++.++||++.+.++..+.+.|+.| .|+|||++++||+||+.+
T Consensus 486 ~~~vLnak~~~rEa~iia~agr~G--~VtIATnmAgRGtDI~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 563 (922)
T 1nkt_A 486 PHNVLNAKYHEQEATIIAVAGRRG--GVTVATNMAGRGTDIVLGGNVDFLTDQRLRERGLDPVETPEEYEAAWHSELPIV 563 (922)
T ss_dssp CCEEECSSCHHHHHHHHHTTTSTT--CEEEEETTCSTTCCCCTTCCHHHHHHHHHHHTTCCTTTSHHHHHHHHHHHHHHH
T ss_pred CEEEecCChhHHHHHHHHhcCCCC--eEEEecchhhcCccccCCCCHHHHHHHHHhhccccccccchhhHHHHHHHHHHH
Confidence 999999999888887777888887 699999999999999975
Q ss_pred ----------------ceEEecCCCCChhHHHHHhcccccCCCccEEEEEecCCC
Q 007814 464 ----------------QHVINYDMPAEIENYVHRIGRTGRCGKTGIATTFINKNQ 502 (588)
Q Consensus 464 ----------------~~VI~~~~p~s~~~y~qriGRagR~g~~g~~~~~~~~~~ 502 (588)
.|||+|++|.|...|.||+|||||.|.+|.+++|++..+
T Consensus 564 ~~~~~~~~~~V~~~GGlhVI~te~pes~riy~qr~GRTGRqGdpG~s~fflSleD 618 (922)
T 1nkt_A 564 KEEASKEAKEVIEAGGLYVLGTERHESRRIDNQLRGRSGRQGDPGESRFYLSLGD 618 (922)
T ss_dssp HHHTTHHHHHHHHTTSEEEEECSCCSSHHHHHHHHHTSSGGGCCEEEEEEEETTS
T ss_pred HHHHHHhhhHHHhcCCcEEEeccCCCCHHHHHHHhcccccCCCCeeEEEEechhH
Confidence 499999999999999999999999999999999999874
No 34
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=100.00 E-value=1.4e-43 Score=410.06 Aligned_cols=327 Identities=17% Similarity=0.205 Sum_probs=205.8
Q ss_pred CCCCCCcHHHHHHHHHHhcCCCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEEEEEcCCHHHHHHHHHHHH
Q 007814 161 KGIVQPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFCLIVCPSRELARQTYEVVE 240 (588)
Q Consensus 161 ~g~~~p~~~Q~~~i~~il~g~dvii~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Q~~~~~~ 240 (588)
.|+..|+|+|.++++.+++|+|+++++|||||||++|++|++..+.... .+.++++|||+||++|+.|+++.+.
T Consensus 244 ~~~~~~r~~Q~~ai~~il~g~~~ll~a~TGsGKTl~~~~~i~~~l~~~~------~~~~~~vLvl~Pt~~L~~Q~~~~~~ 317 (936)
T 4a2w_A 244 YETKKARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMP------AGRKAKVVFLATKVPVYEQQKNVFK 317 (936)
T ss_dssp ----CCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHTTTTTCC------SSCCCCEEEECSSHHHHHHHHHHHH
T ss_pred cCCCCCCHHHHHHHHHHHcCCCEEEEeCCCchHHHHHHHHHHHHHHhcc------ccCCCeEEEEeCCHHHHHHHHHHHH
Confidence 4678999999999999999999999999999999999999987654321 1236789999999999999999999
Q ss_pred HHhhcccccCCCCceEEEEEcCcchHHHHHHHhcCCcEEEeChHHHHHHHHcccC-CCCCcceeEecCcccccccCcHHH
Q 007814 241 QFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKM-NLDNCRYLTLDEADRLVDLGFEDD 319 (588)
Q Consensus 241 ~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~L~~~l~~~~~-~l~~~~~lViDEah~l~~~~~~~~ 319 (588)
+++... ++++..++|+.+...+...+..+++|+|+||++|.+.+....+ .+..+++|||||||++...+....
T Consensus 318 ~~~~~~------~~~v~~~~G~~~~~~~~~~~~~~~~IvI~Tp~~L~~~l~~~~~~~l~~~~liViDEaH~~~~~~~~~~ 391 (936)
T 4a2w_A 318 HHFERQ------GYSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHNTTGNHPYNV 391 (936)
T ss_dssp HHHHTT------TCCEEEECCC-----CCHHHHHHCSEEEECHHHHHHHHHSSSCCCGGGCSEEEEETGGGCSTTCHHHH
T ss_pred HHhccc------CceEEEEECCcchhhHHHHhccCCCEEEecHHHHHHHHHcCccccccCCCEEEEECccccCCCccHHH
Confidence 998755 7899999999877766666666799999999999999987766 788999999999999988753222
Q ss_pred H-HHHHHhh----hhcceeEEEecccch-----------HHHHHH------------------HHhcCCCeEEEecCCCC
Q 007814 320 I-REVFDHF----KAQRQTLLFSATMPT-----------KIQNFA------------------RSALVKPVTVNVGRAGA 365 (588)
Q Consensus 320 i-~~i~~~~----~~~~q~l~~SAT~~~-----------~i~~~~------------------~~~l~~p~~i~~~~~~~ 365 (588)
+ ..++... ....|+++||||++. .+..+. ..++..|..........
T Consensus 392 i~~~~~~~~~~~~~~~~~~l~LSATp~~~~~~~l~~~~~~i~~L~~~L~~~~i~~~~~~~~~l~~~~~~p~~~~~~~~~~ 471 (936)
T 4a2w_A 392 LMTRYLEQKFNSASQLPQILGLTASVGVGNAKNIEETIEHICSLCSYLDIQAISTVRENIQELQRFMNKPEIDVRLVKRR 471 (936)
T ss_dssp HHHHHHHHHHTTCSCCCEEEEEESCCCCTTCCSHHHHHHHHHHHHHHHTCSEEECCCSSHHHHHHHSCCCCEEEEECCCC
T ss_pred HHHHHHHHhhccCCCcCeEEEecCCcccccchhHHHHHHHHHHHHHhcCCceeecccccHHHHHHhccCCcceEEecccc
Confidence 2 2222221 334789999999952 222211 11222222111110000
Q ss_pred cccc------------------e--------EEEee--------eh----------------------------------
Q 007814 366 ANLD------------------V--------IQEVE--------YV---------------------------------- 377 (588)
Q Consensus 366 ~~~~------------------~--------~~~~~--------~~---------------------------------- 377 (588)
.... + ..... ++
T Consensus 472 ~~~~~~~~l~~l~~~i~~~~~~~l~~~~l~~~~~~~~g~~~y~~~l~~l~k~~~~~~l~~~~~~~~~~~~l~~~~~~l~~ 551 (936)
T 4a2w_A 472 IHNPFAAIISNLMSETEALMRTIAYVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLEDKEEESRICRALFICTEHLRK 551 (936)
T ss_dssp SCCHHHHHHHHHHHHHHHHHHHC------------CCSSHHHHHHHHHHHHHHHHCCCSCHHHHHHHHHHHHHHHHHHHH
T ss_pred cCcHHHHHHHHHHHHHHHHHHHHHhhhhhhhccccccchHHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHH
Confidence 0000 0 00000 00
Q ss_pred ----------------------------------------------------------hhHHHHHHHHHHhhc-----CC
Q 007814 378 ----------------------------------------------------------KQEAKIVYLLECLQK-----TP 394 (588)
Q Consensus 378 ----------------------------------------------------------~~~~k~~~ll~~l~~-----~~ 394 (588)
....|+..+.+.+.+ .+
T Consensus 552 ~~~al~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~e~~l~~~~~~~~~~l~~~~~~~~~~~~K~~~L~~lL~~~~~~~~~ 631 (936)
T 4a2w_A 552 YNDALIISEDARIIDALSYLTEFFTNVKNGPYTELEQHLTAKFQEKEPELIALSKDETNENPKLEELVCILDDAYRYNPQ 631 (936)
T ss_dssp HHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTSTTCCCHHHHHHHHHHHHTTTSCTT
T ss_pred HHHHHhhhcchhHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHhhhccCCCCHHHHHHHHHHHHHhccCCC
Confidence 001233344444433 35
Q ss_pred CCEEEEeCccccHHHHHHHHHHc------------CCcEEEEeCCCCHHHHHHHHHHHhc-CCcEEEEEcCccccCCCCC
Q 007814 395 PPVLIFCENKADVDDIHEYLLLK------------GVEAVAVHGGKDQEEREYAISSFKA-GKKDVLVATDVASKGLDFP 461 (588)
Q Consensus 395 ~~viIF~~s~~~~~~l~~~L~~~------------g~~~~~ihg~~~~~~R~~~~~~f~~-g~~~vLVaT~~~~~GlDip 461 (588)
.++||||+++..++.++++|... |..+..+||+|++.+|..+++.|++ |+++|||||+++++|||+|
T Consensus 632 ~rvLIF~~t~~~ae~L~~~L~~~~~l~~ik~~~l~G~~~~~~hg~m~~~eR~~il~~Fr~~g~~~VLVaT~~~~eGIDlp 711 (936)
T 4a2w_A 632 TRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATSVADEGIDIV 711 (936)
T ss_dssp CCEEEEESSHHHHHHHHHHHHHCSTTSSCCCEEC----------------------------CCSEEEEECC------CC
T ss_pred CeEEEEeCCHHHHHHHHHHHhhCccccccceeEEecCCCcccCCCCCHHHHHHHHHHhhccCCeeEEEEeCchhcCCcch
Confidence 79999999999999999999986 6667778999999999999999999 9999999999999999999
Q ss_pred CcceEEecCCCCChhHHHHHhcccccCCCccEEEEEecCC
Q 007814 462 DIQHVINYDMPAEIENYVHRIGRTGRCGKTGIATTFINKN 501 (588)
Q Consensus 462 ~v~~VI~~~~p~s~~~y~qriGRagR~g~~g~~~~~~~~~ 501 (588)
++++||+||+|+|+..|+||+|| ||. +.|.++.|++..
T Consensus 712 ~v~~VI~yD~p~s~~~~iQr~GR-GR~-~~g~vi~Li~~~ 749 (936)
T 4a2w_A 712 QCNLVVLYEYSGNVTKMIQVRGR-GRA-AGSKCILVTSKT 749 (936)
T ss_dssp CCSEEEEESCCSCSHHHHCC---------CCCEEEEESCH
T ss_pred hCCEEEEeCCCCCHHHHHHhcCC-CCC-CCCEEEEEEeCC
Confidence 99999999999999999999999 999 789999998775
No 35
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=100.00 E-value=2.8e-44 Score=407.09 Aligned_cols=323 Identities=20% Similarity=0.264 Sum_probs=226.9
Q ss_pred CCCcHHHHHHHHHHhcCCCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEEEEEcCCHHHHHHH-HHHHHHH
Q 007814 164 VQPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFCLIVCPSRELARQT-YEVVEQF 242 (588)
Q Consensus 164 ~~p~~~Q~~~i~~il~g~dvii~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Q~-~~~~~~~ 242 (588)
..|+|+|.++++.++.|+|+++++|||+|||++|++|++..+..... .+.++++|||+|+++|+.|+ .+.+.++
T Consensus 6 ~~l~~~Q~~~i~~il~g~~~ll~~~TGsGKTl~~~~~i~~~l~~~~~-----~~~~~~vlvl~P~~~L~~Q~~~~~l~~~ 80 (699)
T 4gl2_A 6 LQLRPYQMEVAQPALEGKNIIICLPTGCGKTRVAVYIAKDHLDKKKK-----ASEPGKVIVLVNKVLLVEQLFRKEFQPF 80 (699)
T ss_dssp -CCCHHHHHHHHHHHSSCCEEECCCTTSCHHHHHHHHHHHHHHHHHH-----HTCCCCBCCEESCSHHHHHHHHHTHHHH
T ss_pred CCccHHHHHHHHHHHhCCCEEEEcCCCCcHHHHHHHHHHHHHHhccc-----cCCCCeEEEEECCHHHHHHHHHHHHHHH
Confidence 37999999999999999999999999999999999999988765421 12346899999999999999 9999999
Q ss_pred hhcccccCCCCceEEEEEcCcchHHHHHHHhcCCcEEEeChHHHHHHH------HcccCCCCCcceeEecCcccccccCc
Q 007814 243 LTPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDML------AKKKMNLDNCRYLTLDEADRLVDLGF 316 (588)
Q Consensus 243 ~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~L~~~l------~~~~~~l~~~~~lViDEah~l~~~~~ 316 (588)
+.. .+++..++|+.....+...+..+++|+|+||++|.+.+ ....+.+..+++|||||||++...++
T Consensus 81 ~~~-------~~~v~~~~g~~~~~~~~~~~~~~~~Ilv~Tp~~L~~~l~~~~~~~~~~~~~~~~~lvViDEaH~~~~~~~ 153 (699)
T 4gl2_A 81 LKK-------WYRVIGLSGDTQLKISFPEVVKSCDIIISTAQILENSLLNLENGEDAGVQLSDFSLIIIDECHHTNKEAV 153 (699)
T ss_dssp HTT-------TSCEEEEC----CCCCHHHHHHSCSEEEEEHHHHHHHTC--------CCCGGGCSEEEEESGGGCBTTBS
T ss_pred cCc-------CceEEEEeCCcchhhHHHhhhcCCCEEEECHHHHHHHHhccccccccceecccCcEEEEECccccCccch
Confidence 752 38899999998877766777778999999999999888 44556788999999999999876443
Q ss_pred HHH-HHHHHHh----hh---------hcceeEEEecccchH-----------HHHHHHHh------------------cC
Q 007814 317 EDD-IREVFDH----FK---------AQRQTLLFSATMPTK-----------IQNFARSA------------------LV 353 (588)
Q Consensus 317 ~~~-i~~i~~~----~~---------~~~q~l~~SAT~~~~-----------i~~~~~~~------------------l~ 353 (588)
... +...+.. .. +..|++++|||++.. +..+...+ ..
T Consensus 154 ~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~il~lTATp~~~~~~~~~~~~~~i~~l~~~l~~~~i~~~~~~~~~l~~~~~ 233 (699)
T 4gl2_A 154 YNNIMRHYLMQKLKNNRLKKENKPVIPLPQILGLTASPGVGGATKQAKAEEHILKLCANLDAFTIKTVKENLDQLKNQIQ 233 (699)
T ss_dssp SCSHHHHHHHHHHHHHHHHC----CCCCCEEEEECSCCCCCSCCSHHHHHHHHHHHHHHHTCSCCCCCCTTHHHHHHHSC
T ss_pred HHHHHHHHHHhhhcccccccccccCCCCCEEEEecccccccccccHHHHHHHHHHHHhhcCCCEEEeecCchHHHhhhcC
Confidence 332 2222221 11 457899999999862 22222211 11
Q ss_pred CCeEEEecCCCCcc-c----------------ce--EEEee---------------------------------------
Q 007814 354 KPVTVNVGRAGAAN-L----------------DV--IQEVE--------------------------------------- 375 (588)
Q Consensus 354 ~p~~i~~~~~~~~~-~----------------~~--~~~~~--------------------------------------- 375 (588)
.|............ . .+ ...+.
T Consensus 234 ~p~~~~~~~~~~~~~~~~~~l~~l~~~i~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 313 (699)
T 4gl2_A 234 EPCKKFAIADATREDPFKEKLLEIMTRIQTYCQMSPMSDFGTQPYEQWAIQMEKKAAKEGNRKERVCAEHLRKYNEALQI 313 (699)
T ss_dssp CCEEEEEEEC-----CHHHHHHHHHHHHHHHHTCCCCSCSSSHHHHHHHHHHHHHHHHHTCTTTHHHHHHHHHHHHHHHH
T ss_pred CCceEEEEcccccCChHHHHHHHHHHHHHHHhccCcchhccchHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHH
Confidence 12111000000000 0 00 00000
Q ss_pred -------------------------------------ehh-------------------------hHHHHHHHHHHhhc-
Q 007814 376 -------------------------------------YVK-------------------------QEAKIVYLLECLQK- 392 (588)
Q Consensus 376 -------------------------------------~~~-------------------------~~~k~~~ll~~l~~- 392 (588)
... ...++..+++.+..
T Consensus 314 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~k~~~L~~~L~~~ 393 (699)
T 4gl2_A 314 NDTIRMIDAYTHLETFYNEEKDKKFAVIEDDLKKPLKLDETDRFLMTLFFENNKMLKRLAENPEYENEKLTKLRNTIMEQ 393 (699)
T ss_dssp HHHSCHHHHHHHHHHHHHHHHHHHC------------CCHHHHHHHHHHHHHHHHHHHHHTCCC----CSSCSHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhccccccccccccccchhHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHH
Confidence 000 00111111222222
Q ss_pred ----C-CCCEEEEeCccccHHHHHHHHHHc------CCcEEEEeCC--------CCHHHHHHHHHHHhcCCcEEEEEcCc
Q 007814 393 ----T-PPPVLIFCENKADVDDIHEYLLLK------GVEAVAVHGG--------KDQEEREYAISSFKAGKKDVLVATDV 453 (588)
Q Consensus 393 ----~-~~~viIF~~s~~~~~~l~~~L~~~------g~~~~~ihg~--------~~~~~R~~~~~~f~~g~~~vLVaT~~ 453 (588)
. +.++||||+++..++.+++.|... |+.+..+||+ |++.+|..+++.|++|+.+|||||++
T Consensus 394 ~~~~~~~~~~IVF~~s~~~~~~l~~~L~~~~~l~~~g~~~~~lhg~~~~~~~~~~~~~eR~~~~~~F~~g~~~VLVaT~~ 473 (699)
T 4gl2_A 394 YTRTEESARGIIFTKTRQSAYALSQWITENEKFAEVGVKAHHLIGAGHSSEFKPMTQNEQKEVISKFRTGKINLLIATTV 473 (699)
T ss_dssp HHHSSSCCCEEEECSCHHHHHHHHHHHHSSCSCC-----CEECCCSCCCTTCCCCCHHHHHHHHHHHCC---CCSEEECS
T ss_pred HhcCCCCCcEEEEECcHHHHHHHHHHHHhCccccccCcceEEEECCCCccCCCCCCHHHHHHHHHHHhcCCCcEEEEccc
Confidence 2 689999999999999999999987 8999999999 99999999999999999999999999
Q ss_pred cccCCCCCCcceEEecCCCCChhHHHHHhcccccCCCccEEEEEecCC
Q 007814 454 ASKGLDFPDIQHVINYDMPAEIENYVHRIGRTGRCGKTGIATTFINKN 501 (588)
Q Consensus 454 ~~~GlDip~v~~VI~~~~p~s~~~y~qriGRagR~g~~g~~~~~~~~~ 501 (588)
+++|||+|++++||+||+|+|+..|+||+|||||.| .+++|+...
T Consensus 474 ~~~GIDip~v~~VI~~d~p~s~~~~~Qr~GRArr~g---~~~~l~~~~ 518 (699)
T 4gl2_A 474 AEEGLDIKECNIVIRYGLVTNEIAMVQARGRARADE---STYVLVAHS 518 (699)
T ss_dssp CCTTSCCCSCCCCEEESCCCCHHHHHHHHTTSCSSS---CEEEEEEES
T ss_pred cccCCccccCCEEEEeCCCCCHHHHHHHcCCCCCCC---ceEEEEEeC
Confidence 999999999999999999999999999999987665 455555443
No 36
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=100.00 E-value=2.8e-43 Score=395.36 Aligned_cols=320 Identities=18% Similarity=0.210 Sum_probs=241.5
Q ss_pred HHHHHHHHHCCCCCCcHHHHHHHHHHhcC------CCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEEEEE
Q 007814 152 EPILKKLKAKGIVQPTPIQVQGLPVVLSG------RDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFCLIV 225 (588)
Q Consensus 152 ~~l~~~l~~~g~~~p~~~Q~~~i~~il~g------~dvii~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~Lil 225 (588)
..+...+...+| .||++|.++|+.++.+ .+++++||||||||++|++|++..+. .+.+++||
T Consensus 356 ~~~~~~~~~lpf-~lt~~Q~~ai~~I~~~l~~~~~~~~Ll~a~TGSGKTlvall~il~~l~-----------~g~qvlvl 423 (780)
T 1gm5_A 356 KLAEEFIKSLPF-KLTNAQKRAHQEIRNDMISEKPMNRLLQGDVGSGKTVVAQLAILDNYE-----------AGFQTAFM 423 (780)
T ss_dssp HHHHHHHHHSSS-CCCHHHHHHHHHHHHHHHSSSCCCCEEECCSSSSHHHHHHHHHHHHHH-----------HTSCEEEE
T ss_pred HHHHHHHHhCCC-CCCHHHHHHHHHHHhhccccCCCcEEEEcCCCCCHHHHHHHHHHHHHH-----------cCCeEEEE
Confidence 344455567799 8999999999999865 59999999999999999999998763 36789999
Q ss_pred cCCHHHHHHHHHHHHHHhhcccccCCCCceEEEEEcCcchHHHH---HHHhcC-CcEEEeChHHHHHHHHcccCCCCCcc
Q 007814 226 CPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQL---EVVKRG-VHIVVATPGRLKDMLAKKKMNLDNCR 301 (588)
Q Consensus 226 ~Ptr~La~Q~~~~~~~~~~~~~~~~~~~i~~~~~~gg~~~~~~~---~~l~~~-~~IvV~Tp~~L~~~l~~~~~~l~~~~ 301 (588)
+||++||.|+++.+.+++..+ ++++..++|+....+.. ..+..| ++|+|+||+.|.+ ...+.+++
T Consensus 424 aPtr~La~Q~~~~l~~~~~~~------gi~v~~l~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~-----~~~~~~l~ 492 (780)
T 1gm5_A 424 VPTSILAIQHYRRTVESFSKF------NIHVALLIGATTPSEKEKIKSGLRNGQIDVVIGTHALIQE-----DVHFKNLG 492 (780)
T ss_dssp CSCHHHHHHHHHHHHHHHTCS------SCCEEECCSSSCHHHHHHHHHHHHSSCCCEEEECTTHHHH-----CCCCSCCC
T ss_pred eCcHHHHHHHHHHHHHHhhhc------CceEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhh-----hhhccCCc
Confidence 999999999999999998755 78999999998776543 344444 9999999987743 46688999
Q ss_pred eeEecCcccccccCcHHHHHHHHHhhhhcceeEEEecccchHHHHHHHHhcCCCeEEEecCCCCcccceEEEeeehhhHH
Q 007814 302 YLTLDEADRLVDLGFEDDIREVFDHFKAQRQTLLFSATMPTKIQNFARSALVKPVTVNVGRAGAANLDVIQEVEYVKQEA 381 (588)
Q Consensus 302 ~lViDEah~l~~~~~~~~i~~i~~~~~~~~q~l~~SAT~~~~i~~~~~~~l~~p~~i~~~~~~~~~~~~~~~~~~~~~~~ 381 (588)
+||+||+|++.. ..+..+.......++++||||+++....+.. ........+.........+...+.......
T Consensus 493 lVVIDEaHr~g~-----~qr~~l~~~~~~~~vL~mSATp~p~tl~~~~--~g~~~~s~i~~~p~~r~~i~~~~~~~~~~~ 565 (780)
T 1gm5_A 493 LVIIDEQHRFGV-----KQREALMNKGKMVDTLVMSATPIPRSMALAF--YGDLDVTVIDEMPPGRKEVQTMLVPMDRVN 565 (780)
T ss_dssp EEEEESCCCC----------CCCCSSSSCCCEEEEESSCCCHHHHHHH--TCCSSCEEECCCCSSCCCCEECCCCSSTHH
T ss_pred eEEecccchhhH-----HHHHHHHHhCCCCCEEEEeCCCCHHHHHHHH--hCCcceeeeeccCCCCcceEEEEeccchHH
Confidence 999999999632 1222333334568999999998776544332 222211112211111222322222222223
Q ss_pred HHHHHHHHhhcCCCCEEEEeCcc--------ccHHHHHHHHHH---cCCcEEEEeCCCCHHHHHHHHHHHhcCCcEEEEE
Q 007814 382 KIVYLLECLQKTPPPVLIFCENK--------ADVDDIHEYLLL---KGVEAVAVHGGKDQEEREYAISSFKAGKKDVLVA 450 (588)
Q Consensus 382 k~~~ll~~l~~~~~~viIF~~s~--------~~~~~l~~~L~~---~g~~~~~ihg~~~~~~R~~~~~~f~~g~~~vLVa 450 (588)
.+...+......+.+++|||++. ..++.+++.|.. .++.+..+||+|++.+|..+++.|++|+.+||||
T Consensus 566 ~l~~~i~~~l~~g~qvlVf~~~ie~se~l~~~~a~~l~~~L~~~~~~~~~v~~lHG~m~~~eR~~v~~~F~~G~~~ILVa 645 (780)
T 1gm5_A 566 EVYEFVRQEVMRGGQAFIVYPLIEESDKLNVKSAVEMYEYLSKEVFPEFKLGLMHGRLSQEEKDRVMLEFAEGRYDILVS 645 (780)
T ss_dssp HHHHHHHHHTTTSCCBCCBCCCC--------CHHHHHHHSGGGSCC---CBCCCCSSSCCSCSHHHHHHHTTTSSSBCCC
T ss_pred HHHHHHHHHHhcCCcEEEEecchhhhhhhhHHHHHHHHHHHHhhhcCCCcEEEEeCCCCHHHHHHHHHHHHCCCCeEEEE
Confidence 33333333334577999999976 447888888887 4788999999999999999999999999999999
Q ss_pred cCccccCCCCCCcceEEecCCCC-ChhHHHHHhcccccCCCccEEEEEecCC
Q 007814 451 TDVASKGLDFPDIQHVINYDMPA-EIENYVHRIGRTGRCGKTGIATTFINKN 501 (588)
Q Consensus 451 T~~~~~GlDip~v~~VI~~~~p~-s~~~y~qriGRagR~g~~g~~~~~~~~~ 501 (588)
|+++++|+|+|++++||+++.|. +...|+||+||+||.|+.|.|++++++.
T Consensus 646 T~vie~GIDiP~v~~VIi~d~~r~~l~~l~Qr~GRaGR~g~~g~~ill~~~~ 697 (780)
T 1gm5_A 646 TTVIEVGIDVPRANVMVIENPERFGLAQLHQLRGRVGRGGQEAYCFLVVGDV 697 (780)
T ss_dssp SSCCCSCSCCTTCCEEEBCSCSSSCTTHHHHHHHTSCCSSTTCEEECCCCSC
T ss_pred CCCCCccccCCCCCEEEEeCCCCCCHHHHHHHhcccCcCCCCCEEEEEECCC
Confidence 99999999999999999999996 7899999999999999999999998843
No 37
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A
Probab=100.00 E-value=1.7e-42 Score=400.90 Aligned_cols=307 Identities=20% Similarity=0.250 Sum_probs=243.7
Q ss_pred CCCCCcHHHHHHHHHHhcCCCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEEEEEcCCHHHHHHHHHHHHH
Q 007814 162 GIVQPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFCLIVCPSRELARQTYEVVEQ 241 (588)
Q Consensus 162 g~~~p~~~Q~~~i~~il~g~dvii~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Q~~~~~~~ 241 (588)
+| .|+|+|.++|+.+++|+|++++||||||||++|++|+...+. .++++||++|+++|+.|+++.+.+
T Consensus 37 ~f-~l~~~Q~~aI~~il~g~~vlv~apTGsGKTlv~~~~i~~~~~-----------~g~~vlvl~PtraLa~Q~~~~l~~ 104 (997)
T 4a4z_A 37 PF-ELDTFQKEAVYHLEQGDSVFVAAHTSAGKTVVAEYAIAMAHR-----------NMTKTIYTSPIKALSNQKFRDFKE 104 (997)
T ss_dssp SS-CCCHHHHHHHHHHHTTCEEEEECCTTSCSHHHHHHHHHHHHH-----------TTCEEEEEESCGGGHHHHHHHHHT
T ss_pred CC-CCCHHHHHHHHHHHcCCCEEEEECCCCcHHHHHHHHHHHHHh-----------cCCeEEEEeCCHHHHHHHHHHHHH
Confidence 45 589999999999999999999999999999999999876542 467899999999999999999998
Q ss_pred HhhcccccCCCCceEEEEEcCcchHHHHHHHhcCCcEEEeChHHHHHHHHcccCCCCCcceeEecCcccccccCcHHHHH
Q 007814 242 FLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMNLDNCRYLTLDEADRLVDLGFEDDIR 321 (588)
Q Consensus 242 ~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~L~~~l~~~~~~l~~~~~lViDEah~l~~~~~~~~i~ 321 (588)
++. ++++..++|+..... .++|+|+||++|.+++......+..+++|||||||++.+++|+..+.
T Consensus 105 ~~~--------~~~v~~l~G~~~~~~-------~~~IlV~Tpe~L~~~l~~~~~~l~~l~lvViDEaH~l~d~~~g~~~e 169 (997)
T 4a4z_A 105 TFD--------DVNIGLITGDVQINP-------DANCLIMTTEILRSMLYRGADLIRDVEFVIFDEVHYVNDQDRGVVWE 169 (997)
T ss_dssp TC----------CCEEEECSSCEECT-------TSSEEEEEHHHHHHHHHHTCSGGGGEEEEEECCTTCCCTTCTTCCHH
T ss_pred HcC--------CCeEEEEeCCCccCC-------CCCEEEECHHHHHHHHHhCchhhcCCCEEEEECcccccccchHHHHH
Confidence 753 678899999876543 37999999999999998887788999999999999999999999999
Q ss_pred HHHHhhhhcceeEEEecccchHHHHHHHHh---cCCCeEEEecCCCCcccceEEEee-----------------------
Q 007814 322 EVFDHFKAQRQTLLFSATMPTKIQNFARSA---LVKPVTVNVGRAGAANLDVIQEVE----------------------- 375 (588)
Q Consensus 322 ~i~~~~~~~~q~l~~SAT~~~~i~~~~~~~---l~~p~~i~~~~~~~~~~~~~~~~~----------------------- 375 (588)
.++..++...|+|++|||+++.. .+...+ ...++.+....... ..+.+.+.
T Consensus 170 ~ii~~l~~~v~iIlLSAT~~n~~-ef~~~l~~~~~~~~~vi~~~~r~--~pl~~~v~~~~~~~~~~~~~~~~~~~~~~~~ 246 (997)
T 4a4z_A 170 EVIIMLPQHVKFILLSATVPNTY-EFANWIGRTKQKNIYVISTPKRP--VPLEINIWAKKELIPVINQNSEFLEANFRKH 246 (997)
T ss_dssp HHHHHSCTTCEEEEEECCCTTHH-HHHHHHHHHHTCCEEEEECSSCS--SCEEEEEEETTEEEEEECTTCCBCHHHHHHH
T ss_pred HHHHhcccCCCEEEEcCCCCChH-HHHHHHhcccCCceEEEecCCCC--ccceEEEecCCcchhcccchhhhhHHHHHHH
Confidence 99999999999999999998653 333222 22232222111100 00000000
Q ss_pred ----------------------------------------------------------------------ehhhHHHHHH
Q 007814 376 ----------------------------------------------------------------------YVKQEAKIVY 385 (588)
Q Consensus 376 ----------------------------------------------------------------------~~~~~~k~~~ 385 (588)
.......+..
T Consensus 247 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (997)
T 4a4z_A 247 KEILNGESAKGAPSKTDNGRGGSTARGGRGGSNTRDGRGGRGNSTRGGANRGGSRGAGAIGSNKRKFFTQDGPSKKTWPE 326 (997)
T ss_dssp HHHHC-----------------------------------------------------------------CCCCTTHHHH
T ss_pred HHHhhccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccchhHHHH
Confidence 0001223445
Q ss_pred HHHHhhcC-CCCEEEEeCccccHHHHHHHHHHcCC---------------------------------------cEEEEe
Q 007814 386 LLECLQKT-PPPVLIFCENKADVDDIHEYLLLKGV---------------------------------------EAVAVH 425 (588)
Q Consensus 386 ll~~l~~~-~~~viIF~~s~~~~~~l~~~L~~~g~---------------------------------------~~~~ih 425 (588)
++..+... ..++||||+++..|+.++..|...++ .+..+|
T Consensus 327 li~~l~~~~~~~~IVF~~sr~~~e~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gi~~~H 406 (997)
T 4a4z_A 327 IVNYLRKRELLPMVVFVFSKKRCEEYADWLEGINFCNNKEKSQIHMFIEKSITRLKKEDRDLPQILKTRSLLERGIAVHH 406 (997)
T ss_dssp HHHHHHHTTCCSEEEECSCHHHHHHHHHTTTTCCCCCHHHHHHHHHHHHHHHTTSCHHHHTCHHHHHHHHHHTTTEEEEC
T ss_pred HHHHHHhCCCCCEEEEECCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhcchhhhcchhHHHHHHHhhcCeeeec
Confidence 66666554 46999999999999999999976655 478999
Q ss_pred CCCCHHHHHHHHHHHhcCCcEEEEEcCccccCCCCCCcceEEecCCCC---------ChhHHHHHhcccccCC--CccEE
Q 007814 426 GGKDQEEREYAISSFKAGKKDVLVATDVASKGLDFPDIQHVINYDMPA---------EIENYVHRIGRTGRCG--KTGIA 494 (588)
Q Consensus 426 g~~~~~~R~~~~~~f~~g~~~vLVaT~~~~~GlDip~v~~VI~~~~p~---------s~~~y~qriGRagR~g--~~g~~ 494 (588)
|+|++.+|..+++.|++|.++|||||+++++|||+|+ ..||++++|+ |+..|+||+|||||.| ..|.+
T Consensus 407 ~gl~~~~R~~v~~~F~~G~~kVLvAT~~~a~GIDiP~-~~VVi~~~~k~dg~~~~~~s~~~y~Qr~GRAGR~G~~~~G~v 485 (997)
T 4a4z_A 407 GGLLPIVKELIEILFSKGFIKVLFATETFAMGLNLPT-RTVIFSSIRKHDGNGLRELTPGEFTQMAGRAGRRGLDSTGTV 485 (997)
T ss_dssp TTSCHHHHHHHHHHHHTTCCSEEEECTHHHHSCCCCC-SEEEESCSEEEETTEEEECCHHHHHHHHGGGCCTTTCSSEEE
T ss_pred CCCCHHHHHHHHHHHHCCCCcEEEEchHhhCCCCCCC-ceEEEeccccccCccCCCCCHHHHhHHhcccccCCCCcceEE
Confidence 9999999999999999999999999999999999999 5555555555 9999999999999998 56777
Q ss_pred EEEec
Q 007814 495 TTFIN 499 (588)
Q Consensus 495 ~~~~~ 499 (588)
++++.
T Consensus 486 i~l~~ 490 (997)
T 4a4z_A 486 IVMAY 490 (997)
T ss_dssp EEECC
T ss_pred EEecC
Confidence 77774
No 38
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=100.00 E-value=1.6e-41 Score=408.75 Aligned_cols=331 Identities=15% Similarity=0.209 Sum_probs=248.4
Q ss_pred CCHHHHHHHHHCCCCCCcHHHHHHHHHHhc-CCCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEEEEEcCC
Q 007814 150 FPEPILKKLKAKGIVQPTPIQVQGLPVVLS-GRDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFCLIVCPS 228 (588)
Q Consensus 150 l~~~l~~~l~~~g~~~p~~~Q~~~i~~il~-g~dvii~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~Lil~Pt 228 (588)
++.+..+.+...+|..++|+|.++++.++. ++|++++||||||||++|.+|++..+.+. ++.++|||+|+
T Consensus 911 L~~~~~e~l~~~~f~~fnpiQ~q~~~~l~~~~~nvlv~APTGSGKTliaelail~~l~~~---------~~~kavyi~P~ 981 (1724)
T 4f92_B 911 LRNSAFESLYQDKFPFFNPIQTQVFNTVYNSDDNVFVGAPTGSGKTICAEFAILRMLLQS---------SEGRCVYITPM 981 (1724)
T ss_dssp SCCHHHHTTTTTTCSBCCHHHHHHHHHHHSCCSCEEEECCTTSCCHHHHHHHHHHHHHHC---------TTCCEEEECSC
T ss_pred ccCHHHHHHHHhcCCCCCHHHHHHHHHHhcCCCcEEEEeCCCCCchHHHHHHHHHHHHhC---------CCCEEEEEcCh
Confidence 456777888888999999999999999984 57899999999999999999999988762 46789999999
Q ss_pred HHHHHHHHHHHHHHhh-cccccCCCCceEEEEEcCcchHHHHHHHhcCCcEEEeChHHHHHHHHcc--cCCCCCcceeEe
Q 007814 229 RELARQTYEVVEQFLT-PMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKK--KMNLDNCRYLTL 305 (588)
Q Consensus 229 r~La~Q~~~~~~~~~~-~~~~~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~L~~~l~~~--~~~l~~~~~lVi 305 (588)
++||.|+++.+.+.+. .+ ++++..++|+...... . ..+++|+|||||+|..++.+. ...++++++||+
T Consensus 982 raLa~q~~~~~~~~f~~~~------g~~V~~ltGd~~~~~~--~-~~~~~IiV~TPEkld~llr~~~~~~~l~~v~lvVi 1052 (1724)
T 4f92_B 982 EALAEQVYMDWYEKFQDRL------NKKVVLLTGETSTDLK--L-LGKGNIIISTPEKWDILSRRWKQRKNVQNINLFVV 1052 (1724)
T ss_dssp HHHHHHHHHHHHHHHTTTS------CCCEEECCSCHHHHHH--H-HHHCSEEEECHHHHHHHHTTTTTCHHHHSCSEEEE
T ss_pred HHHHHHHHHHHHHHhchhc------CCEEEEEECCCCcchh--h-cCCCCEEEECHHHHHHHHhCcccccccceeeEEEe
Confidence 9999999999987543 33 7889999998654332 2 234799999999996666542 234678999999
Q ss_pred cCcccccccCcHHHHHHHHHh-------hhhcceeEEEecccchHHHHHHHHhcCCCe-EEEecCCCCcccceEEEeeeh
Q 007814 306 DEADRLVDLGFEDDIREVFDH-------FKAQRQTLLFSATMPTKIQNFARSALVKPV-TVNVGRAGAANLDVIQEVEYV 377 (588)
Q Consensus 306 DEah~l~~~~~~~~i~~i~~~-------~~~~~q~l~~SAT~~~~i~~~~~~~l~~p~-~i~~~~~~~~~~~~~~~~~~~ 377 (588)
||+|++.+. ++..+..++.. .+...|+|+||||+++. .+++..+-..+. ...+. .......+...+...
T Consensus 1053 DE~H~l~d~-rg~~le~il~rl~~i~~~~~~~~riI~lSATl~N~-~dla~WL~~~~~~~~~~~-~~~RPvpL~~~i~~~ 1129 (1724)
T 4f92_B 1053 DEVHLIGGE-NGPVLEVICSRMRYISSQIERPIRIVALSSSLSNA-KDVAHWLGCSATSTFNFH-PNVRPVPLELHIQGF 1129 (1724)
T ss_dssp CCGGGGGST-THHHHHHHHHHHHHHHHTTSSCCEEEEEESCBTTH-HHHHHHHTCCSTTEEECC-GGGCSSCEEEEEEEE
T ss_pred echhhcCCC-CCccHHHHHHHHHHHHhhcCCCceEEEEeCCCCCH-HHHHHHhCCCCCCeEEeC-CCCCCCCeEEEEEec
Confidence 999998874 55655555443 35678999999999864 455554433321 22221 112222222222111
Q ss_pred ---hhHHHHH----HHHHHh--hcCCCCEEEEeCccccHHHHHHHHHHc-------------------------------
Q 007814 378 ---KQEAKIV----YLLECL--QKTPPPVLIFCENKADVDDIHEYLLLK------------------------------- 417 (588)
Q Consensus 378 ---~~~~k~~----~ll~~l--~~~~~~viIF~~s~~~~~~l~~~L~~~------------------------------- 417 (588)
....++. .+...+ ....+++||||+++..|+.++..|...
T Consensus 1130 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~lVF~~sR~~~~~~A~~L~~~~~~~~~~~~~~~~~~~~l~~~l~~~~d~~L~ 1209 (1724)
T 4f92_B 1130 NISHTQTRLLSMAKPVYHAITKHSPKKPVIVFVPSRKQTRLTAIDILTTCAADIQRQRFLHCTEKDLIPYLEKLSDSTLK 1209 (1724)
T ss_dssp CCCSHHHHHHTTHHHHHHHHHHHCSSSCEEEEESSHHHHHHHHHHHHHHHHHTTCTTTTBCSCHHHHHHHHTTCCCHHHH
T ss_pred cCCCchhhhhhhcchHHHHHHHhcCCCCeeeeCCCHHHHHHHHHHHHHHHhhccchhhhhcccHHHHHHHHhhcccHHHH
Confidence 1111111 111122 235679999999999999988776431
Q ss_pred ---CCcEEEEeCCCCHHHHHHHHHHHhcCCcEEEEEcCccccCCCCCCcceEEe----------cCCCCChhHHHHHhcc
Q 007814 418 ---GVEAVAVHGGKDQEEREYAISSFKAGKKDVLVATDVASKGLDFPDIQHVIN----------YDMPAEIENYVHRIGR 484 (588)
Q Consensus 418 ---g~~~~~ihg~~~~~~R~~~~~~f~~g~~~vLVaT~~~~~GlDip~v~~VI~----------~~~p~s~~~y~qriGR 484 (588)
...++.+||||++.+|..+++.|++|.++|||||+++++|||+|++.+||. ...|.++.+|+||+||
T Consensus 1210 ~~l~~GIa~hHagL~~~~R~~VE~lF~~G~i~VLvaT~tlA~GVnlPa~~VVI~~~~~~dg~~~~~~~~s~~~~~Qm~GR 1289 (1724)
T 4f92_B 1210 ETLLNGVGYLHEGLSPMERRLVEQLFSSGAIQVVVASRSLCWGMNVAAHLVIIMDTQYYNGKIHAYVDYPIYDVLQMVGH 1289 (1724)
T ss_dssp HHHHTTEEEECTTSCHHHHHHHHHHHHHTSBCEEEEEGGGSSSCCCCBSEEEEECSEEEETTTTEEEECCHHHHHHHHTT
T ss_pred HHHhCCEEEECCCCCHHHHHHHHHHHHCCCCeEEEEChHHHcCCCCCccEEEEecCccccCcccccCCCCHHHHHHhhcc
Confidence 235789999999999999999999999999999999999999999999983 3346789999999999
Q ss_pred cccCCC--ccEEEEEecCC
Q 007814 485 TGRCGK--TGIATTFINKN 501 (588)
Q Consensus 485 agR~g~--~g~~~~~~~~~ 501 (588)
|||.|. .|.|++++.+.
T Consensus 1290 AGR~g~d~~G~avll~~~~ 1308 (1724)
T 4f92_B 1290 ANRPLQDDEGRCVIMCQGS 1308 (1724)
T ss_dssp BCCTTTCSCEEEEEEEEGG
T ss_pred ccCCCCCCceEEEEEecch
Confidence 999987 68999998765
No 39
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=100.00 E-value=1.2e-40 Score=390.78 Aligned_cols=322 Identities=20% Similarity=0.208 Sum_probs=258.3
Q ss_pred CCCHHHHHHHHHC-CCCCCcHHHHHHHHHHhc----CC--CEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCE
Q 007814 149 RFPEPILKKLKAK-GIVQPTPIQVQGLPVVLS----GR--DMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPF 221 (588)
Q Consensus 149 ~l~~~l~~~l~~~-g~~~p~~~Q~~~i~~il~----g~--dvii~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~ 221 (588)
+.+....+.+... +| .|||+|.++++.++. |+ |++++++||+|||++++++++..+. .+++
T Consensus 587 ~~~~~~~~~~~~~f~~-~~t~~Q~~ai~~il~~~~~g~p~d~ll~~~TGsGKT~val~aa~~~~~-----------~g~~ 654 (1151)
T 2eyq_A 587 KHDREQYQLFCDSFPF-ETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVD-----------NHKQ 654 (1151)
T ss_dssp CCCHHHHHHHHHTCCS-CCCHHHHHHHHHHHHHHHSSSCCEEEEECCCCTTTHHHHHHHHHHHHT-----------TTCE
T ss_pred CCCHHHHHHHHHhCCC-CCCHHHHHHHHHHHHHHhcCCcCcEEEECCCCCCHHHHHHHHHHHHHH-----------hCCe
Confidence 4556666666655 66 479999999999986 66 9999999999999999999887542 4679
Q ss_pred EEEEcCCHHHHHHHHHHHHHHhhcccccCCCCceEEEEEcCcchHHH---HHHHhc-CCcEEEeChHHHHHHHHcccCCC
Q 007814 222 CLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQ---LEVVKR-GVHIVVATPGRLKDMLAKKKMNL 297 (588)
Q Consensus 222 ~Lil~Ptr~La~Q~~~~~~~~~~~~~~~~~~~i~~~~~~gg~~~~~~---~~~l~~-~~~IvV~Tp~~L~~~l~~~~~~l 297 (588)
++||+||++||.|+++.+.+++... ++++..++|.....+. ...+.. .++|+|+||+.| .+.+.+
T Consensus 655 vlvlvPt~~La~Q~~~~~~~~~~~~------~i~v~~l~~~~~~~~~~~~~~~l~~g~~dIvV~T~~ll-----~~~~~~ 723 (1151)
T 2eyq_A 655 VAVLVPTTLLAQQHYDNFRDRFANW------PVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLL-----QSDVKF 723 (1151)
T ss_dssp EEEECSSHHHHHHHHHHHHHHSTTT------TCCEEEESTTSCHHHHHHHHHHHHTTCCSEEEECTHHH-----HSCCCC
T ss_pred EEEEechHHHHHHHHHHHHHHhhcC------CCeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHH-----hCCccc
Confidence 9999999999999999999887644 6788888876655443 334444 499999999755 345678
Q ss_pred CCcceeEecCcccccccCcHHHHHHHHHhhhhcceeEEEecccchHHHHHHHHhcCCCeEEEecCCCCcccceEEEeeeh
Q 007814 298 DNCRYLTLDEADRLVDLGFEDDIREVFDHFKAQRQTLLFSATMPTKIQNFARSALVKPVTVNVGRAGAANLDVIQEVEYV 377 (588)
Q Consensus 298 ~~~~~lViDEah~l~~~~~~~~i~~i~~~~~~~~q~l~~SAT~~~~i~~~~~~~l~~p~~i~~~~~~~~~~~~~~~~~~~ 377 (588)
.++++|||||+|++ ......++..++...++++||||+++....+....+.++..+.. .......+...+...
T Consensus 724 ~~l~lvIiDEaH~~-----g~~~~~~l~~l~~~~~vl~lSATp~p~~l~~~~~~~~~~~~i~~--~~~~r~~i~~~~~~~ 796 (1151)
T 2eyq_A 724 KDLGLLIVDEEHRF-----GVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSIIAT--PPARRLAVKTFVREY 796 (1151)
T ss_dssp SSEEEEEEESGGGS-----CHHHHHHHHHHHTTSEEEEEESSCCCHHHHHHHTTTSEEEECCC--CCCBCBCEEEEEEEC
T ss_pred cccceEEEechHhc-----ChHHHHHHHHhcCCCCEEEEcCCCChhhHHHHHhcCCCceEEec--CCCCccccEEEEecC
Confidence 89999999999994 35667778888888999999999988777666665554433322 222233444444433
Q ss_pred hhHHHHHHHHHHhhcCCCCEEEEeCccccHHHHHHHHHHc--CCcEEEEeCCCCHHHHHHHHHHHhcCCcEEEEEcCccc
Q 007814 378 KQEAKIVYLLECLQKTPPPVLIFCENKADVDDIHEYLLLK--GVEAVAVHGGKDQEEREYAISSFKAGKKDVLVATDVAS 455 (588)
Q Consensus 378 ~~~~k~~~ll~~l~~~~~~viIF~~s~~~~~~l~~~L~~~--g~~~~~ihg~~~~~~R~~~~~~f~~g~~~vLVaT~~~~ 455 (588)
........++..+. .+++++|||+++..++.+++.|... ++.+..+||+|++.+|..+++.|++|+.+|||||++++
T Consensus 797 ~~~~i~~~il~~l~-~g~qvlvf~~~v~~~~~l~~~L~~~~p~~~v~~lhg~~~~~eR~~il~~F~~g~~~VLVaT~v~e 875 (1151)
T 2eyq_A 797 DSMVVREAILREIL-RGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIE 875 (1151)
T ss_dssp CHHHHHHHHHHHHT-TTCEEEEECCCSSCHHHHHHHHHHHCTTSCEEECCSSCCHHHHHHHHHHHHTTSCCEEEESSTTG
T ss_pred CHHHHHHHHHHHHh-cCCeEEEEECCHHHHHHHHHHHHHhCCCCeEEEEeCCCCHHHHHHHHHHHHcCCCcEEEECCcce
Confidence 33333344444433 4678999999999999999999988 88999999999999999999999999999999999999
Q ss_pred cCCCCCCcceEEecCC-CCChhHHHHHhcccccCCCccEEEEEecCC
Q 007814 456 KGLDFPDIQHVINYDM-PAEIENYVHRIGRTGRCGKTGIATTFINKN 501 (588)
Q Consensus 456 ~GlDip~v~~VI~~~~-p~s~~~y~qriGRagR~g~~g~~~~~~~~~ 501 (588)
+|+|+|++++||+++. ++++.+|+||+||+||.|+.|.|++++++.
T Consensus 876 ~GiDip~v~~VIi~~~~~~~l~~l~Qr~GRvgR~g~~g~~~ll~~~~ 922 (1151)
T 2eyq_A 876 TGIDIPTANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHP 922 (1151)
T ss_dssp GGSCCTTEEEEEETTTTSSCHHHHHHHHTTCCBTTBCEEEEEEECCG
T ss_pred eeecccCCcEEEEeCCCCCCHHHHHHHHhccCcCCCceEEEEEECCc
Confidence 9999999999999988 569999999999999999999999998764
No 40
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=100.00 E-value=4.1e-41 Score=330.76 Aligned_cols=238 Identities=39% Similarity=0.707 Sum_probs=218.0
Q ss_pred CCHHHHHHHHHhcCeEeecCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCCEEEEecCCchHhHH
Q 007814 117 MSKKACDLIRKQWHIIVDGEDIPPPIKNFKDMRFPEPILKKLKAKGIVQPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLV 196 (588)
Q Consensus 117 ~~~~~~~~~r~~~~i~v~g~~~p~p~~~f~~~~l~~~l~~~l~~~g~~~p~~~Q~~~i~~il~g~dvii~a~TGsGKTl~ 196 (588)
++.+++..+|+++.+.+.|.+.|.|+.+|.++++++.+++.|.+.||..|+|+|.++|+.+++|+|++++||||||||++
T Consensus 3 ~~~~~~~~~~~~~~i~~~~~~~p~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~g~~~l~~apTGsGKT~~ 82 (242)
T 3fe2_A 3 RTAQEVETYRRSKEITVRGHNCPKPVLNFYEANFPANVMDVIARQNFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLS 82 (242)
T ss_dssp ---CHHHHHHHHHTEEEESSCCCCCCSSTTTTTCCHHHHHHHHTTTCCSCCHHHHHHHHHHHHTCCEEEEECTTSCHHHH
T ss_pred CCHHHHHHHHhcCceEEeCCCCCCccCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCcCHHHHH
Confidence 56778899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhcccCCCCCCCCCEEEEEcCCHHHHHHHHHHHHHHhhcccccCCCCceEEEEEcCcchHHHHHHHhcCC
Q 007814 197 FVLPMIMIAMHEEMMMPIVPGEGPFCLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGV 276 (588)
Q Consensus 197 ~~lp~l~~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Q~~~~~~~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~~~~ 276 (588)
|++|++..+.... ......++++|||+||++|+.|+++.+.+++... ++++..++||.+...+...+..++
T Consensus 83 ~~l~~l~~l~~~~---~~~~~~~~~~lil~Pt~~L~~Q~~~~~~~~~~~~------~~~~~~~~g~~~~~~~~~~~~~~~ 153 (242)
T 3fe2_A 83 YLLPAIVHINHQP---FLERGDGPICLVLAPTRELAQQVQQVAAEYCRAC------RLKSTCIYGGAPKGPQIRDLERGV 153 (242)
T ss_dssp HHHHHHHHHHTSC---CCCTTCCCSEEEECSSHHHHHHHHHHHHHHHHHT------TCCEEEECTTSCHHHHHHHHHHCC
T ss_pred HHHHHHHHHHhcc---ccccCCCCEEEEEeCcHHHHHHHHHHHHHHHhhc------CceEEEEECCCChHHHHHHhcCCC
Confidence 9999998876532 1122457889999999999999999999998765 789999999999998888888999
Q ss_pred cEEEeChHHHHHHHHcccCCCCCcceeEecCcccccccCcHHHHHHHHHhhhhcceeEEEecccchHHHHHHHHhcCCCe
Q 007814 277 HIVVATPGRLKDMLAKKKMNLDNCRYLTLDEADRLVDLGFEDDIREVFDHFKAQRQTLLFSATMPTKIQNFARSALVKPV 356 (588)
Q Consensus 277 ~IvV~Tp~~L~~~l~~~~~~l~~~~~lViDEah~l~~~~~~~~i~~i~~~~~~~~q~l~~SAT~~~~i~~~~~~~l~~p~ 356 (588)
+|+|+||++|.+++......+.++++||+||||++.+++|...+..++..++..+|+++||||+|+.+..+++.++.+|+
T Consensus 154 ~I~v~Tp~~l~~~l~~~~~~~~~~~~lViDEah~l~~~~~~~~~~~i~~~~~~~~q~~~~SAT~~~~~~~~~~~~l~~~~ 233 (242)
T 3fe2_A 154 EICIATPGRLIDFLECGKTNLRRTTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVRQLAEDFLKDYI 233 (242)
T ss_dssp SEEEECHHHHHHHHHHTSCCCTTCCEEEETTHHHHHHTTCHHHHHHHHTTSCSSCEEEEEESCCCHHHHHHHHHHCSSCE
T ss_pred CEEEECHHHHHHHHHcCCCCcccccEEEEeCHHHHhhhCcHHHHHHHHHhCCccceEEEEEeecCHHHHHHHHHHCCCCE
Confidence 99999999999999988888999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEecCC
Q 007814 357 TVNVGRA 363 (588)
Q Consensus 357 ~i~~~~~ 363 (588)
.+.++..
T Consensus 234 ~i~~~~~ 240 (242)
T 3fe2_A 234 HINIGAL 240 (242)
T ss_dssp EEEECC-
T ss_pred EEEecCC
Confidence 9987653
No 41
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A
Probab=100.00 E-value=2.4e-43 Score=389.09 Aligned_cols=323 Identities=15% Similarity=0.125 Sum_probs=241.4
Q ss_pred CCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEEEEEcC
Q 007814 148 MRFPEPILKKLKAKGIVQPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFCLIVCP 227 (588)
Q Consensus 148 ~~l~~~l~~~l~~~g~~~p~~~Q~~~i~~il~g~dvii~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~Lil~P 227 (588)
+++++.+.+.+... ...|+|+|..+++.+++|+|++++||||||||++|++|++..+.. .++++|||+|
T Consensus 155 l~~~~~~~~~l~~~-~~~~lpiq~~~i~~l~~g~dvlv~a~TGSGKT~~~~lpil~~l~~----------~~~~vLvl~P 223 (618)
T 2whx_A 155 VTKSGDYVSAITQA-ERIGEPDYEVDEDIFRKKRLTIMDLHPGAGKTKRILPSIVREALK----------RRLRTLILAP 223 (618)
T ss_dssp -------CEECBCC-CCCCCCCCCCCGGGGSTTCEEEECCCTTSSTTTTHHHHHHHHHHH----------TTCCEEEEES
T ss_pred ccchHHHHHHHhhc-cccCCCccccCHHHHhcCCeEEEEcCCCCCHHHHHHHHHHHHHHh----------CCCeEEEEcC
Confidence 55666666555443 478999999899999999999999999999999999999988765 4678999999
Q ss_pred CHHHHHHHHHHHHHHhhcccccCCCCceEEEEEcCcchHHHHHHHhcCCcEEEeChHHHHHHHHcccCCCCCcceeEecC
Q 007814 228 SRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMNLDNCRYLTLDE 307 (588)
Q Consensus 228 tr~La~Q~~~~~~~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~L~~~l~~~~~~l~~~~~lViDE 307 (588)
||+||.|+++.+..+ .+. +.+... . .....+..+.++|.+.+...+... ..++++++|||||
T Consensus 224 treLa~Qi~~~l~~~------------~v~-~~~~~l-~---~~~tp~~~i~~~t~~~l~~~l~~~-~~l~~~~~iViDE 285 (618)
T 2whx_A 224 TRVVAAEMEEALRGL------------PIR-YQTPAV-K---SDHTGREIVDLMCHATFTTRLLSS-TRVPNYNLIVMDE 285 (618)
T ss_dssp SHHHHHHHHHHTTTS------------CEE-ECCTTS-S---CCCCSSSCEEEEEHHHHHHHHHHC-SSCCCCSEEEEES
T ss_pred hHHHHHHHHHHhcCC------------cee-Eecccc-e---eccCCCceEEEEChHHHHHHHhcc-ccccCCeEEEEEC
Confidence 999999999877532 222 222110 0 000123467788888887655544 4588999999999
Q ss_pred cccccccCcHHHHHHHHHhhh-hcceeEEEecccchHHHHHHHHhcCCCeEEEecCCCCcccceEEEeeehhhHHHHHHH
Q 007814 308 ADRLVDLGFEDDIREVFDHFK-AQRQTLLFSATMPTKIQNFARSALVKPVTVNVGRAGAANLDVIQEVEYVKQEAKIVYL 386 (588)
Q Consensus 308 ah~l~~~~~~~~i~~i~~~~~-~~~q~l~~SAT~~~~i~~~~~~~l~~p~~i~~~~~~~~~~~~~~~~~~~~~~~k~~~l 386 (588)
||++ +.+|...+..++..++ ..+|+++||||++..+..++. .++..+.+..... . .++..+
T Consensus 286 ah~~-~~~~~~~~~~i~~~l~~~~~q~il~SAT~~~~~~~~~~---~~~~~~~v~~~~~-~-------------~~~~~l 347 (618)
T 2whx_A 286 AHFT-DPCSVAARGYISTRVEMGEAAAIFMTATPPGSTDPFPQ---SNSPIEDIEREIP-E-------------RSWNTG 347 (618)
T ss_dssp TTCC-SHHHHHHHHHHHHHHHHTSCEEEEECSSCTTCCCSSCC---CSSCEEEEECCCC-S-------------SCCSSS
T ss_pred CCCC-CccHHHHHHHHHHHhcccCccEEEEECCCchhhhhhhc---cCCceeeecccCC-H-------------HHHHHH
Confidence 9998 7778888888888875 678999999999887543332 2333332221100 0 001122
Q ss_pred HHHhhcCCCCEEEEeCccccHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhcCCcEEEEEcCccccCCCCCCcceE
Q 007814 387 LECLQKTPPPVLIFCENKADVDDIHEYLLLKGVEAVAVHGGKDQEEREYAISSFKAGKKDVLVATDVASKGLDFPDIQHV 466 (588)
Q Consensus 387 l~~l~~~~~~viIF~~s~~~~~~l~~~L~~~g~~~~~ihg~~~~~~R~~~~~~f~~g~~~vLVaT~~~~~GlDip~v~~V 466 (588)
+..+.+..+++||||+++..++.+++.|...++.+..+||. +|..+++.|++|+.+|||||+++++|||+| +++|
T Consensus 348 l~~l~~~~~~~LVF~~s~~~a~~l~~~L~~~g~~v~~lhg~----~R~~~l~~F~~g~~~VLVaTdv~~rGiDi~-v~~V 422 (618)
T 2whx_A 348 FDWITDYQGKTVWFVPSIKAGNDIANCLRKSGKRVIQLSRK----TFDTEYPKTKLTDWDFVVTTDISEMGANFR-AGRV 422 (618)
T ss_dssp CHHHHHCCSCEEEECSSHHHHHHHHHHHHHTTCCEEEECTT----THHHHTTHHHHSCCSEEEECGGGGTTCCCC-CSEE
T ss_pred HHHHHhCCCCEEEEECChhHHHHHHHHHHHcCCcEEEEChH----HHHHHHHhhcCCCcEEEEECcHHHcCcccC-ceEE
Confidence 33344457799999999999999999999999999999984 688899999999999999999999999997 9888
Q ss_pred --------------------EecCCCCChhHHHHHhcccccCCC-ccEEEEEec---CCCChhHHHHHHHHHHHhcccCc
Q 007814 467 --------------------INYDMPAEIENYVHRIGRTGRCGK-TGIATTFIN---KNQSETTLLDLKHLLQEAKQRIP 522 (588)
Q Consensus 467 --------------------I~~~~p~s~~~y~qriGRagR~g~-~g~~~~~~~---~~~~~~~~~~l~~~l~~~~~~~p 522 (588)
|+|++|.+.++|+||+|||||.|. .|.+++|++ +. +...+..+...+......+|
T Consensus 423 Id~g~~~~P~~~~~~~~~~~i~~d~P~s~~~yiQR~GRaGR~g~~~G~ai~l~~~~~~~-d~~~l~~le~~i~l~~~~~~ 501 (618)
T 2whx_A 423 IDPRRCLKPVILTDGPERVILAGPIPVTPASAAQRRGRIGRNPAQEDDQYVFSGDPLKN-DEDHAHWTEAKMLLDNIYTP 501 (618)
T ss_dssp EECCEEEEEEEECSSSCEEEEEEEEECCHHHHHHHHTTSSCCTTCCCEEEEECSCCCCC-CTTCHHHHHHHHHHTTCCCT
T ss_pred EECcceecceecccCCCceEEcccccCCHHHHHHhccccCCCCCCCCeEEEEccCCchh-hHHHHHHHHhHhccccccCC
Confidence 777889999999999999999965 999999997 44 55667777776655555555
Q ss_pred h
Q 007814 523 P 523 (588)
Q Consensus 523 ~ 523 (588)
.
T Consensus 502 ~ 502 (618)
T 2whx_A 502 E 502 (618)
T ss_dssp T
T ss_pred c
Confidence 4
No 42
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=100.00 E-value=3.7e-41 Score=405.74 Aligned_cols=340 Identities=17% Similarity=0.195 Sum_probs=250.7
Q ss_pred CCHHHHHHHHHCCCCCCcHHHHHHHHHHh-cCCCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEEEEEcCC
Q 007814 150 FPEPILKKLKAKGIVQPTPIQVQGLPVVL-SGRDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFCLIVCPS 228 (588)
Q Consensus 150 l~~~l~~~l~~~g~~~p~~~Q~~~i~~il-~g~dvii~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~Lil~Pt 228 (588)
||+.....+ .||++|+++|.+++|.++ +++|++++||||||||++|.+|++..+.............+.++|||+|+
T Consensus 66 Lp~~~~~~f--~g~~~ln~iQs~~~~~al~~~~N~lv~APTGsGKTlva~l~il~~l~~~~~~~~~~~~~~~k~lyiaP~ 143 (1724)
T 4f92_B 66 LPKYAQAGF--EGFKTLNRIQSKLYRAALETDENLLLCAPTGAGKTNVALMCMLREIGKHINMDGTINVDDFKIIYIAPM 143 (1724)
T ss_dssp SCGGGSTTC--TTCSBCCHHHHHTHHHHHTCCCCEEEECCTTSCCHHHHHHHHHHHHGGGCCTTSSCCTTSCEEEEECSS
T ss_pred cCHHHHHhc--CCCCCCCHHHHHHHHHHHcCCCcEEEEeCCcchHHHHHHHHHHHHHHhhccccccccCCCCEEEEECCH
Confidence 455444433 279999999999999988 68899999999999999999999998876533222333467899999999
Q ss_pred HHHHHHHHHHHHHHhhcccccCCCCceEEEEEcCcchHHHHHHHhcCCcEEEeChHHHHHHHHccc--CCCCCcceeEec
Q 007814 229 RELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKK--MNLDNCRYLTLD 306 (588)
Q Consensus 229 r~La~Q~~~~~~~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~L~~~l~~~~--~~l~~~~~lViD 306 (588)
++||.|+++.+.+.+..+ ++++..++|+.+...+. ..+++|+|||||+|..++.+.. ..++.+++||||
T Consensus 144 kALa~e~~~~l~~~~~~~------gi~V~~~tGd~~~~~~~---~~~~~IlVtTpEkld~llr~~~~~~~l~~v~~vIiD 214 (1724)
T 4f92_B 144 RSLVQEMVGSFGKRLATY------GITVAELTGDHQLCKEE---ISATQIIVCTPEKWDIITRKGGERTYTQLVRLIILD 214 (1724)
T ss_dssp HHHHHHHHHHHHHHHTTT------TCCEEECCSSCSSCCTT---GGGCSEEEECHHHHHHHTTSSTTHHHHTTEEEEEET
T ss_pred HHHHHHHHHHHHHHHhhC------CCEEEEEECCCCCCccc---cCCCCEEEECHHHHHHHHcCCccchhhcCcCEEEEe
Confidence 999999999999988765 89999999987654321 2458999999999954444322 237889999999
Q ss_pred CcccccccCcHHHHHHHHHh-------hhhcceeEEEecccchHHHHHHHHhcCCCe--EEEecCCCCcccceEEEeeeh
Q 007814 307 EADRLVDLGFEDDIREVFDH-------FKAQRQTLLFSATMPTKIQNFARSALVKPV--TVNVGRAGAANLDVIQEVEYV 377 (588)
Q Consensus 307 Eah~l~~~~~~~~i~~i~~~-------~~~~~q~l~~SAT~~~~i~~~~~~~l~~p~--~i~~~~~~~~~~~~~~~~~~~ 377 (588)
|+|.+.+ .++..++.++.. .+...|+|++|||+|+. .+++..+-..+. ...+. .......+.+.+...
T Consensus 215 EvH~l~d-~RG~~lE~~l~rl~~~~~~~~~~~riI~LSATl~N~-~dvA~wL~~~~~~~~~~~~-~~~RPvpL~~~~~~~ 291 (1724)
T 4f92_B 215 EIHLLHD-DRGPVLEALVARAIRNIEMTQEDVRLIGLSATLPNY-EDVATFLRVDPAKGLFYFD-NSFRPVPLEQTYVGI 291 (1724)
T ss_dssp TGGGGGS-TTHHHHHHHHHHHHHHHHHHTCCCEEEEEECSCTTH-HHHHHHTTCCHHHHEEECC-GGGCSSCEEEECCEE
T ss_pred cchhcCC-ccHHHHHHHHHHHHHHHHhCCCCCcEEEEecccCCH-HHHHHHhCCCCCCCeEEEC-CCCccCccEEEEecc
Confidence 9998876 466666655543 45678999999999863 445543322211 11111 111222333332221
Q ss_pred h---hHHH---HHH-HHHHhhc--CCCCEEEEeCccccHHHHHHHHHHc-------------------------------
Q 007814 378 K---QEAK---IVY-LLECLQK--TPPPVLIFCENKADVDDIHEYLLLK------------------------------- 417 (588)
Q Consensus 378 ~---~~~k---~~~-ll~~l~~--~~~~viIF~~s~~~~~~l~~~L~~~------------------------------- 417 (588)
. .... +.. +...+.+ .++++||||+|++.|+.+++.|...
T Consensus 292 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~LVF~~sR~~~~~~A~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 371 (1724)
T 4f92_B 292 TEKKAIKRFQIMNEIVYEKIMEHAGKNQVLVFVHSRKETGKTARAIRDMCLEKDTLGLFLREGSASTEVLRTEAEQCKNL 371 (1724)
T ss_dssp CCCCHHHHHHHHHHHHHHHHTTCCSSCCEEEECSSTTTTHHHHHHHHHHHHHTTSTTCCSSCCTTCSSHHHHTTSCCSTH
T ss_pred CCcchhhhhHHHHHHHHHHHHHHhcCCcEEEECCCHHHHHHHHHHHHHHHhhccchhhhcccchhHHHHHHhhhcccccH
Confidence 1 1111 111 1222322 3568999999999999999888542
Q ss_pred ------CCcEEEEeCCCCHHHHHHHHHHHhcCCcEEEEEcCccccCCCCCCcceEEe----cC------CCCChhHHHHH
Q 007814 418 ------GVEAVAVHGGKDQEEREYAISSFKAGKKDVLVATDVASKGLDFPDIQHVIN----YD------MPAEIENYVHR 481 (588)
Q Consensus 418 ------g~~~~~ihg~~~~~~R~~~~~~f~~g~~~vLVaT~~~~~GlDip~v~~VI~----~~------~p~s~~~y~qr 481 (588)
...++++||||++.+|..+++.|++|.++|||||+++++|||+|++++||. |+ .|.++.+|.||
T Consensus 372 ~l~~~l~~Gva~HHagL~~~~R~~vE~~F~~G~i~vlvaTsTLa~GVNlPa~~vVI~~~~~~~~~~~~~~~ls~~~~~Qm 451 (1724)
T 4f92_B 372 ELKDLLPYGFAIHHAGMTRVDRTLVEDLFADKHIQVLVSTATLAWGVNLPAHTVIIKGTQVYSPEKGRWTELGALDILQM 451 (1724)
T ss_dssp HHHHHTTTTEEEECSSSCTHHHHHHHHHHHTTCCCEEEECHHHHHHSCCCBSEEEEECCEEEETTTTEEEECCHHHHHHH
T ss_pred HHHHHhhcCEEEEcCCCCHHHHHHHHHHHHCCCCeEEEEcchhHhhCCCCCceEEEeCCEEecCcCCCcccCCHHHHHHh
Confidence 234789999999999999999999999999999999999999999999985 43 35689999999
Q ss_pred hcccccCCC--ccEEEEEecCCCC
Q 007814 482 IGRTGRCGK--TGIATTFINKNQS 503 (588)
Q Consensus 482 iGRagR~g~--~g~~~~~~~~~~~ 503 (588)
+|||||.|. .|.++++...++.
T Consensus 452 ~GRAGR~g~d~~G~~ii~~~~~~~ 475 (1724)
T 4f92_B 452 LGRAGRPQYDTKGEGILITSHGEL 475 (1724)
T ss_dssp HTTBSCTTTCSCEEEEEEEESTTC
T ss_pred hhhccCCCCCCccEEEEEecchhH
Confidence 999999874 6899998887743
No 43
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=100.00 E-value=6.3e-42 Score=366.64 Aligned_cols=312 Identities=15% Similarity=0.132 Sum_probs=226.6
Q ss_pred CCCCCcHHHHHHHHHHhcCCCE-EEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEEEEEcCCHHHHHHHHHHHH
Q 007814 162 GIVQPTPIQVQGLPVVLSGRDM-IGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFCLIVCPSRELARQTYEVVE 240 (588)
Q Consensus 162 g~~~p~~~Q~~~i~~il~g~dv-ii~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Q~~~~~~ 240 (588)
|+..|+|+|. +||.+++++++ +++||||||||++|++|++..+.. .++++||++||++||.|+++.+.
T Consensus 1 G~~q~~~iq~-~i~~~l~~~~~~lv~a~TGsGKT~~~~~~~l~~~~~----------~~~~~lvl~Ptr~La~Q~~~~l~ 69 (451)
T 2jlq_A 1 GSAMGEPDYE-VDEDIFRKKRLTIMDLHPGAGKTKRILPSIVREALL----------RRLRTLILAPTRVVAAEMEEALR 69 (451)
T ss_dssp CCCCCSCCCC-CCGGGGSTTCEEEECCCTTSSCCTTHHHHHHHHHHH----------TTCCEEEEESSHHHHHHHHHHTT
T ss_pred CCCCCCCcHH-HHHHHHhcCCeEEEECCCCCCHhhHHHHHHHHHHHh----------cCCcEEEECCCHHHHHHHHHHhc
Confidence 6789999985 79999999887 888999999999999999987655 46789999999999999998774
Q ss_pred HHhhcccccCCCCceEEEEEcCcchHHHHHHHhcCCcEEEeChHHHHHHHHcccCCCCCcceeEecCcccccccCcHHHH
Q 007814 241 QFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMNLDNCRYLTLDEADRLVDLGFEDDI 320 (588)
Q Consensus 241 ~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~L~~~l~~~~~~l~~~~~lViDEah~l~~~~~~~~i 320 (588)
.+ .+....+.... ....+..|.++|++.|.+.+... ..+.++++|||||||++ +.++...+
T Consensus 70 g~------------~v~~~~~~~~~-----~~~~~~~i~~~t~~~l~~~l~~~-~~l~~~~~iViDEah~~-~~~~~~~~ 130 (451)
T 2jlq_A 70 GL------------PIRYQTPAVKS-----DHTGREIVDLMCHATFTTRLLSS-TRVPNYNLIVMDEAHFT-DPCSVAAR 130 (451)
T ss_dssp TS------------CEEECCTTCSC-----CCCSSCCEEEEEHHHHHHHHHHC-SCCCCCSEEEEETTTCC-SHHHHHHH
T ss_pred Cc------------eeeeeeccccc-----cCCCCceEEEEChHHHHHHhhCc-ccccCCCEEEEeCCccC-CcchHHHH
Confidence 22 22221111110 01234579999999998777654 55889999999999987 44333333
Q ss_pred HHHHHh-hhhcceeEEEecccchHHHHHHHHhcCCCeEEEecCCCCcccceEEEeeehhhHHHHHHHHHHhhcCCCCEEE
Q 007814 321 REVFDH-FKAQRQTLLFSATMPTKIQNFARSALVKPVTVNVGRAGAANLDVIQEVEYVKQEAKIVYLLECLQKTPPPVLI 399 (588)
Q Consensus 321 ~~i~~~-~~~~~q~l~~SAT~~~~i~~~~~~~l~~p~~i~~~~~~~~~~~~~~~~~~~~~~~k~~~ll~~l~~~~~~viI 399 (588)
..+... ..+.+|+++||||+|..+..+ +..++..+....... .. .+. .+...+.+..+++||
T Consensus 131 ~~~~~~~~~~~~~~i~~SAT~~~~~~~~---~~~~~~~~~~~~~~p-~~------~~~-------~~~~~l~~~~~~~lV 193 (451)
T 2jlq_A 131 GYISTRVEMGEAAAIFMTATPPGSTDPF---PQSNSPIEDIEREIP-ER------SWN-------TGFDWITDYQGKTVW 193 (451)
T ss_dssp HHHHHHHHTTSCEEEEECSSCTTCCCSS---CCCSSCEEEEECCCC-SS------CCS-------SSCHHHHHCCSCEEE
T ss_pred HHHHHhhcCCCceEEEEccCCCccchhh---hcCCCceEecCccCC-ch------hhH-------HHHHHHHhCCCCEEE
Confidence 333222 345789999999998754332 223333333321100 00 000 112333445679999
Q ss_pred EeCccccHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhcCCcEEEEEcCccccCCCCCCcceEEecC---------
Q 007814 400 FCENKADVDDIHEYLLLKGVEAVAVHGGKDQEEREYAISSFKAGKKDVLVATDVASKGLDFPDIQHVINYD--------- 470 (588)
Q Consensus 400 F~~s~~~~~~l~~~L~~~g~~~~~ihg~~~~~~R~~~~~~f~~g~~~vLVaT~~~~~GlDip~v~~VI~~~--------- 470 (588)
||+++..++.+++.|...|+.+..+||.+. ..+++.|++|+.+|||||+++++|+|+|+ ++||+||
T Consensus 194 F~~s~~~a~~l~~~L~~~g~~~~~lh~~~~----~~~~~~f~~g~~~vLVaT~v~~~GiDip~-~~VI~~~~~~~~~~d~ 268 (451)
T 2jlq_A 194 FVPSIKAGNDIANCLRKSGKRVIQLSRKTF----DTEYPKTKLTDWDFVVTTDISEMGANFRA-GRVIDPRRCLKPVILT 268 (451)
T ss_dssp ECSSHHHHHHHHHHHHTTTCCEEEECTTTH----HHHGGGGGSSCCSEEEECGGGGSSCCCCC-SEEEECCEEEEEEEEC
T ss_pred EcCCHHHHHHHHHHHHHcCCeEEECCHHHH----HHHHHhhccCCceEEEECCHHHhCcCCCC-CEEEECCCcccccccc
Confidence 999999999999999999999999999764 56899999999999999999999999999 9999999
Q ss_pred -----------CCCChhHHHHHhcccccCCC-ccEEEEEecCCCC-hhHH-HHHHHHHHHhcccCchHH
Q 007814 471 -----------MPAEIENYVHRIGRTGRCGK-TGIATTFINKNQS-ETTL-LDLKHLLQEAKQRIPPVL 525 (588)
Q Consensus 471 -----------~p~s~~~y~qriGRagR~g~-~g~~~~~~~~~~~-~~~~-~~l~~~l~~~~~~~p~~l 525 (588)
.|.+..+|+||+|||||.|. .|.+++|+..... ...+ ..+...+...+..+|..+
T Consensus 269 ~~~~~l~~~~~~p~s~~~y~Qr~GRaGR~g~~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 337 (451)
T 2jlq_A 269 DGPERVILAGPIPVTPASAAQRRGRIGRNPAQEDDQYVFSGDPLKNDEDHAHWTEAKMLLDNIYTPEGI 337 (451)
T ss_dssp SSSCEEEEEEEEECCHHHHHHHHTTSSCCTTCCCEEEEECSCCCCCCTTCHHHHHHHHHHTTCCCTTCC
T ss_pred cccceeeecccccCCHHHHHHhccccCCCCCCCccEEEEeCCchhhcchhHHHHHHHHHHhcCCChhHh
Confidence 99999999999999999998 8888888754321 1111 112233334555666543
No 44
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=100.00 E-value=3e-41 Score=368.21 Aligned_cols=310 Identities=16% Similarity=0.132 Sum_probs=233.7
Q ss_pred CCCCcHHHHHHHHHHhcCCCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEEEEEcCCHHHHHHHHHHHHHH
Q 007814 163 IVQPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFCLIVCPSRELARQTYEVVEQF 242 (588)
Q Consensus 163 ~~~p~~~Q~~~i~~il~g~dvii~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Q~~~~~~~~ 242 (588)
...|+|+|.++++.++.++++++++|||+|||+++++++...+.. .++++|||+||++|+.|+++.+.++
T Consensus 111 ~~~l~~~Q~~ai~~~~~~~~~ll~~~tGsGKT~~~~~~~~~~~~~----------~~~~vlvl~P~~~L~~Q~~~~~~~~ 180 (510)
T 2oca_A 111 RIEPHWYQKDAVFEGLVNRRRILNLPTSAGRSLIQALLARYYLEN----------YEGKILIIVPTTALTTQMADDFVDY 180 (510)
T ss_dssp EECCCHHHHHHHHHHHHHSEEEEECCSTTTHHHHHHHHHHHHHHH----------CSSEEEEEESSHHHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHHHHHhC----------CCCeEEEEECcHHHHHHHHHHHHHh
Confidence 348999999999999999999999999999999999988876543 2458999999999999999999888
Q ss_pred hhcccccCCCCceEEEEEcCcchHHHHHHHhcCCcEEEeChHHHHHHHHcccCCCCCcceeEecCcccccccCcHHHHHH
Q 007814 243 LTPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMNLDNCRYLTLDEADRLVDLGFEDDIRE 322 (588)
Q Consensus 243 ~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~L~~~l~~~~~~l~~~~~lViDEah~l~~~~~~~~i~~ 322 (588)
.. .+++++..++|+.+...+ +..+++|+|+||+.|.. .....+.++++|||||||++.. ..+..
T Consensus 181 ~~------~~~~~v~~~~~~~~~~~~---~~~~~~I~i~T~~~l~~---~~~~~~~~~~liIiDE~H~~~~----~~~~~ 244 (510)
T 2oca_A 181 RL------FSHAMIKKIGGGASKDDK---YKNDAPVVVGTWQTVVK---QPKEWFSQFGMMMNDECHLATG----KSISS 244 (510)
T ss_dssp TS------SCGGGEEECGGGCCTTGG---GCTTCSEEEEEHHHHTT---SCGGGGGGEEEEEEETGGGCCH----HHHHH
T ss_pred hc------CCccceEEEecCCccccc---cccCCcEEEEeHHHHhh---chhhhhhcCCEEEEECCcCCCc----ccHHH
Confidence 43 236788888888766554 34568999999997633 2335577899999999999875 56777
Q ss_pred HHHhhhhcceeEEEecccchHHHHHH-HHhcCCCeEEEecCCCC------cccceEEEee-------------ehh----
Q 007814 323 VFDHFKAQRQTLLFSATMPTKIQNFA-RSALVKPVTVNVGRAGA------ANLDVIQEVE-------------YVK---- 378 (588)
Q Consensus 323 i~~~~~~~~q~l~~SAT~~~~i~~~~-~~~l~~p~~i~~~~~~~------~~~~~~~~~~-------------~~~---- 378 (588)
++..+....++++||||+++....+. ...+..+..+....... ....+..... ...
T Consensus 245 il~~~~~~~~~l~lSATp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (510)
T 2oca_A 245 IISGLNNCMFKFGLSGSLRDGKANIMQYVGMFGEIFKPVTTSKLMEDGQVTELKINSIFLRYPDEFTTKLKGKTYQEEIK 324 (510)
T ss_dssp HGGGCTTCCEEEEEESCGGGCSSCHHHHHHHHCSEECCCCCC---------CCEEEEEEEECCHHHHHHHTTCCHHHHHH
T ss_pred HHHhcccCcEEEEEEeCCCCCcccHHHhHHhhCCeEEeeCHHHHhhCCcCCCceEEEEeecCChHHhccccccchHHHHH
Confidence 88888888899999999977643321 11222333222211100 0000100000 000
Q ss_pred ----hHHHHHHHHHHhhc----CCCCEEEEeCccccHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhcCCcEEEEE
Q 007814 379 ----QEAKIVYLLECLQK----TPPPVLIFCENKADVDDIHEYLLLKGVEAVAVHGGKDQEEREYAISSFKAGKKDVLVA 450 (588)
Q Consensus 379 ----~~~k~~~ll~~l~~----~~~~viIF~~s~~~~~~l~~~L~~~g~~~~~ihg~~~~~~R~~~~~~f~~g~~~vLVa 450 (588)
...+...+...+.. .+.++||||+ ...++.+++.|...+..+..+||++++.+|..+++.|++|+.+||||
T Consensus 325 ~~~~~~~~~~~l~~~l~~~~~~~~~~~ivf~~-~~~~~~l~~~L~~~~~~v~~~~g~~~~~~r~~i~~~f~~g~~~vLv~ 403 (510)
T 2oca_A 325 IITGLSKRNKWIAKLAIKLAQKDENAFVMFKH-VSHGKAIFDLIKNEYDKVYYVSGEVDTETRNIMKTLAENGKGIIIVA 403 (510)
T ss_dssp HHHTCHHHHHHHHHHHHHHHTTTCEEEEEESS-HHHHHHHHHHHHTTCSSEEEESSSTTHHHHHHHHHHHHHCCSCEEEE
T ss_pred HHhccHHHHHHHHHHHHHHHhcCCCeEEEEec-HHHHHHHHHHHHHcCCCeEEEECCCCHHHHHHHHHHHhCCCCCEEEE
Confidence 11122223333222 3445666666 88999999999999889999999999999999999999999999999
Q ss_pred c-CccccCCCCCCcceEEecCCCCChhHHHHHhcccccCCCccEEEEEec
Q 007814 451 T-DVASKGLDFPDIQHVINYDMPAEIENYVHRIGRTGRCGKTGIATTFIN 499 (588)
Q Consensus 451 T-~~~~~GlDip~v~~VI~~~~p~s~~~y~qriGRagR~g~~g~~~~~~~ 499 (588)
| +++++|+|+|++++||++++|+++..|+||+||+||.|+.|.++++++
T Consensus 404 T~~~~~~GiDip~v~~vi~~~~~~s~~~~~Q~~GR~gR~g~~~~~v~i~~ 453 (510)
T 2oca_A 404 SYGVFSTGISVKNLHHVVLAHGVKSKIIVLQTIGRVLRKHGSKTIATVWD 453 (510)
T ss_dssp EHHHHHHSCCCCSEEEEEESSCCCSCCHHHHHHHHHHTTTCCCCCCEEEE
T ss_pred EcChhhcccccccCcEEEEeCCCCCHHHHHHHHhcccccCCCCceEEEEE
Confidence 9 999999999999999999999999999999999999998875555544
No 45
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=100.00 E-value=2.3e-42 Score=368.43 Aligned_cols=290 Identities=16% Similarity=0.179 Sum_probs=204.9
Q ss_pred HHhcCCCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEEEEEcCCHHHHHHHHHHHHHHhhcccccCCCCce
Q 007814 176 VVLSGRDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFCLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLR 255 (588)
Q Consensus 176 ~il~g~dvii~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Q~~~~~~~~~~~~~~~~~~~i~ 255 (588)
.+++|+|++++||||||||++|++|++..+.. .++++||++||++||.|+++.+..+ +
T Consensus 4 ~l~~g~~vlv~a~TGSGKT~~~l~~~l~~~~~----------~~~~~lil~Ptr~La~Q~~~~l~~~----------~-- 61 (440)
T 1yks_A 4 MLKKGMTTVLDFHPGAGKTRRFLPQILAECAR----------RRLRTLVLAPTRVVLSEMKEAFHGL----------D-- 61 (440)
T ss_dssp TTSTTCEEEECCCTTSSTTTTHHHHHHHHHHH----------TTCCEEEEESSHHHHHHHHHHTTTS----------C--
T ss_pred HhhCCCCEEEEcCCCCCHHHHHHHHHHHHHHh----------cCCeEEEEcchHHHHHHHHHHHhcC----------C--
Confidence 35689999999999999999999999987755 4678999999999999999887644 2
Q ss_pred EEEEEcCcchHHHHHHHhcCCcEEEeChHHHHHHHHc--------ccCCCCCcceeEecCcccccccCcHHHHHHHHHhh
Q 007814 256 TLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAK--------KKMNLDNCRYLTLDEADRLVDLGFEDDIREVFDHF 327 (588)
Q Consensus 256 ~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~L~~~l~~--------~~~~l~~~~~lViDEah~l~~~~~~~~i~~i~~~~ 327 (588)
+....+.. -.|+||+++.+++.. ....+.++++||+||||++ +.++...+..+....
T Consensus 62 v~~~~~~~--------------~~v~Tp~~l~~~l~~~~l~~~~~~~~~~~~l~~vViDEah~~-~~~~~~~~~~~~~~~ 126 (440)
T 1yks_A 62 VKFHTQAF--------------SAHGSGREVIDAMCHATLTYRMLEPTRVVNWEVIIMDEAHFL-DPASIAARGWAAHRA 126 (440)
T ss_dssp EEEESSCC--------------CCCCCSSCCEEEEEHHHHHHHHTSSSCCCCCSEEEETTTTCC-SHHHHHHHHHHHHHH
T ss_pred eEEecccc--------------eeccCCccceeeecccchhHhhhCcccccCccEEEEECcccc-CcchHHHHHHHHHHh
Confidence 22111110 036777655433222 2345789999999999998 444433333333333
Q ss_pred -hhcceeEEEecccchHHHHHHHHhcCCCeEEEecCCCCcccceEEEeeehhhHHHHHHHHHHhhcCCCCEEEEeCcccc
Q 007814 328 -KAQRQTLLFSATMPTKIQNFARSALVKPVTVNVGRAGAANLDVIQEVEYVKQEAKIVYLLECLQKTPPPVLIFCENKAD 406 (588)
Q Consensus 328 -~~~~q~l~~SAT~~~~i~~~~~~~l~~p~~i~~~~~~~~~~~~~~~~~~~~~~~k~~~ll~~l~~~~~~viIF~~s~~~ 406 (588)
+..+|+++||||+++.+..+... ..++...... ... .....++..+.+.++++||||+++..
T Consensus 127 ~~~~~~~l~~SAT~~~~~~~~~~~--~~~~~~~~~~--------------~~~-~~~~~~~~~l~~~~~~~lVF~~s~~~ 189 (440)
T 1yks_A 127 RANESATILMTATPPGTSDEFPHS--NGEIEDVQTD--------------IPS-EPWNTGHDWILADKRPTAWFLPSIRA 189 (440)
T ss_dssp HTTSCEEEEECSSCTTCCCSSCCC--SSCEEEEECC--------------CCS-SCCSSSCHHHHHCCSCEEEECSCHHH
T ss_pred ccCCceEEEEeCCCCchhhhhhhc--CCCeeEeeec--------------cCh-HHHHHHHHHHHhcCCCEEEEeCCHHH
Confidence 35789999999998775433221 1111111000 000 00111223334457899999999999
Q ss_pred HHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhcCCcEEEEEcCccccCCCCCCcceEEe------------------
Q 007814 407 VDDIHEYLLLKGVEAVAVHGGKDQEEREYAISSFKAGKKDVLVATDVASKGLDFPDIQHVIN------------------ 468 (588)
Q Consensus 407 ~~~l~~~L~~~g~~~~~ihg~~~~~~R~~~~~~f~~g~~~vLVaT~~~~~GlDip~v~~VI~------------------ 468 (588)
++.+++.|...++.+..+|| .+|..+++.|++|+.+|||||+++++|+|+| +++||+
T Consensus 190 a~~l~~~L~~~~~~v~~lhg----~~R~~~~~~F~~g~~~vLVaT~v~e~GiDip-v~~VI~~g~~~~pv~~~~~~~~vi 264 (440)
T 1yks_A 190 ANVMAASLRKAGKSVVVLNR----KTFEREYPTIKQKKPDFILATDIAEMGANLC-VERVLDCRTAFKPVLVDEGRKVAI 264 (440)
T ss_dssp HHHHHHHHHHTTCCEEECCS----SSCC--------CCCSEEEESSSTTCCTTCC-CSEEEECCEEEEEEEETTTTEEEE
T ss_pred HHHHHHHHHHcCCCEEEecc----hhHHHHHhhhcCCCceEEEECChhheeeccC-ceEEEeCCccceeeecccccceee
Confidence 99999999999999999999 4688999999999999999999999999999 999996
Q ss_pred -cCCCCChhHHHHHhcccccC-CCccEEEEEec--CCCChhHHHHHHHHHHHhcccCchH
Q 007814 469 -YDMPAEIENYVHRIGRTGRC-GKTGIATTFIN--KNQSETTLLDLKHLLQEAKQRIPPV 524 (588)
Q Consensus 469 -~~~p~s~~~y~qriGRagR~-g~~g~~~~~~~--~~~~~~~~~~l~~~l~~~~~~~p~~ 524 (588)
|+.|.+.++|+||+||+||. |+.|.|++|+. ...+...+..+...+......+|..
T Consensus 265 ~~~~p~~~~~~~Qr~GR~GR~g~~~g~~~~l~~~~~~~~~~~l~~l~~~~~~~~~~l~~~ 324 (440)
T 1yks_A 265 KGPLRISASSAAQRRGRIGRNPNRDGDSYYYSEPTSENNAHHVCWLEASMLLDNMEVRGG 324 (440)
T ss_dssp EEEEECCHHHHHHHHTTSSCCTTCCCEEEEECSCCCCCCTTBHHHHHHHHHHTTSCCGGG
T ss_pred ccccccCHHHHHHhccccCCCCCCCceEEEEeccCChhhhhhhhhhhHHhcccccccccc
Confidence 88999999999999999997 78999999973 2335667777777776666666654
No 46
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}
Probab=100.00 E-value=3.1e-42 Score=382.55 Aligned_cols=314 Identities=16% Similarity=0.190 Sum_probs=221.8
Q ss_pred HHHHCCCC-----CCcHHHH-----HHHHHHh------cCCCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCC
Q 007814 157 KLKAKGIV-----QPTPIQV-----QGLPVVL------SGRDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGP 220 (588)
Q Consensus 157 ~l~~~g~~-----~p~~~Q~-----~~i~~il------~g~dvii~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~ 220 (588)
+|..+||. .||++|. ++||.++ +|+|++++||||||||++|++|++..+.. .++
T Consensus 202 ~l~~~Gf~~~~~~~pt~IQ~~~r~~~aIp~~l~~~~l~~g~dvlv~apTGSGKTl~~ll~il~~l~~----------~~~ 271 (673)
T 2wv9_A 202 GLYGNGVILGNGAYVSAIVQGERVEEPVPEAYNPEMLKKRQLTVLDLHPGAGKTRRILPQIIKDAIQ----------KRL 271 (673)
T ss_dssp EEEEEEEECSSSCEEEEEECC-------CCCCCGGGGSTTCEEEECCCTTTTTTTTHHHHHHHHHHH----------TTC
T ss_pred EeeeccccccCCCccCceeeccccccchHHHhhHHHHhcCCeEEEEeCCCCCHHHHHHHHHHHHHHh----------CCC
Confidence 45556777 8999999 9999988 89999999999999999999999987655 467
Q ss_pred EEEEEcCCHHHHHHHHHHHHHHhhcccccCCCCceEEEEEcCcchHHHHHHHhcCCcEEEeChHHHHHHHHcccCCCCCc
Q 007814 221 FCLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMNLDNC 300 (588)
Q Consensus 221 ~~Lil~Ptr~La~Q~~~~~~~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~L~~~l~~~~~~l~~~ 300 (588)
++|||+||++||.|+++.+..+ ++. ...+.... ....+.-+-+.+.+.+...+... ..+.++
T Consensus 272 ~~lilaPTr~La~Q~~~~l~~~----------~i~--~~~~~l~~-----v~tp~~ll~~l~~~~l~~~l~~~-~~l~~l 333 (673)
T 2wv9_A 272 RTAVLAPTRVVAAEMAEALRGL----------PVR--YLTPAVQR-----EHSGNEIVDVMCHATLTHRLMSP-LRVPNY 333 (673)
T ss_dssp CEEEEESSHHHHHHHHHHTTTS----------CCE--ECCC---C-----CCCSCCCEEEEEHHHHHHHHHSS-SCCCCC
T ss_pred cEEEEccHHHHHHHHHHHHhcC----------Cee--eecccccc-----cCCHHHHHHHHHhhhhHHHHhcc-cccccc
Confidence 8999999999999999887754 221 11110000 00011223344444444444332 568899
Q ss_pred ceeEecCcccccccCcHHHHHHHHHhhh-hcceeEEEecccchHHHHHHHHhcCCCeEEEecCCCCcccceEEEeeehhh
Q 007814 301 RYLTLDEADRLVDLGFEDDIREVFDHFK-AQRQTLLFSATMPTKIQNFARSALVKPVTVNVGRAGAANLDVIQEVEYVKQ 379 (588)
Q Consensus 301 ~~lViDEah~l~~~~~~~~i~~i~~~~~-~~~q~l~~SAT~~~~i~~~~~~~l~~p~~i~~~~~~~~~~~~~~~~~~~~~ 379 (588)
++|||||||++ +..+...+..+...++ ..+|+++||||+++.+..+... ..|+...... ..
T Consensus 334 ~lvViDEaH~~-~~~~~~~~~~l~~~~~~~~~~vl~~SAT~~~~i~~~~~~--~~~i~~v~~~--------------~~- 395 (673)
T 2wv9_A 334 NLFVMDEAHFT-DPASIAARGYIATRVEAGEAAAIFMTATPPGTSDPFPDT--NSPVHDVSSE--------------IP- 395 (673)
T ss_dssp SEEEEESTTCC-CHHHHHHHHHHHHHHHTTSCEEEEECSSCTTCCCSSCCC--SSCEEEEECC--------------CC-
T ss_pred eEEEEeCCccc-CccHHHHHHHHHHhccccCCcEEEEcCCCChhhhhhccc--CCceEEEeee--------------cC-
Confidence 99999999998 2222233333333343 5789999999998764432221 1122111100 00
Q ss_pred HHHHHHHHHHhhcCCCCEEEEeCccccHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhcCCcEEEEEcCccccCCC
Q 007814 380 EAKIVYLLECLQKTPPPVLIFCENKADVDDIHEYLLLKGVEAVAVHGGKDQEEREYAISSFKAGKKDVLVATDVASKGLD 459 (588)
Q Consensus 380 ~~k~~~ll~~l~~~~~~viIF~~s~~~~~~l~~~L~~~g~~~~~ihg~~~~~~R~~~~~~f~~g~~~vLVaT~~~~~GlD 459 (588)
...+..++..+.+.++++||||+++..++.+++.|...++.+..+||. +|..+++.|++|+.+|||||+++++|||
T Consensus 396 ~~~~~~~l~~l~~~~~~~lVF~~s~~~~e~la~~L~~~g~~v~~lHg~----eR~~v~~~F~~g~~~VLVaTdv~e~GID 471 (673)
T 2wv9_A 396 DRAWSSGFEWITDYAGKTVWFVASVKMSNEIAQCLQRAGKRVIQLNRK----SYDTEYPKCKNGDWDFVITTDISEMGAN 471 (673)
T ss_dssp SSCCSSCCHHHHSCCSCEEEECSSHHHHHHHHHHHHTTTCCEEEECSS----SHHHHGGGGGTCCCSEEEECGGGGTTCC
T ss_pred HHHHHHHHHHHHhCCCCEEEEECCHHHHHHHHHHHHhCCCeEEEeChH----HHHHHHHHHHCCCceEEEECchhhccee
Confidence 001111233444567899999999999999999999999999999993 7899999999999999999999999999
Q ss_pred CCCcceEEe--------------------cCCCCChhHHHHHhcccccC-CCccEEEEEec--CCCChhHHHHHHHHHHH
Q 007814 460 FPDIQHVIN--------------------YDMPAEIENYVHRIGRTGRC-GKTGIATTFIN--KNQSETTLLDLKHLLQE 516 (588)
Q Consensus 460 ip~v~~VI~--------------------~~~p~s~~~y~qriGRagR~-g~~g~~~~~~~--~~~~~~~~~~l~~~l~~ 516 (588)
+| +++||+ |++|.+.++|+||+||+||. |+.|.|++|+. ...+...+..+...+..
T Consensus 472 ip-v~~VI~~g~~~~p~vi~da~~r~~ll~d~P~s~~~y~Qr~GRaGR~~g~~G~ai~l~~~~~~~d~~~l~~ie~~~~l 550 (673)
T 2wv9_A 472 FG-ASRVIDCRKSVKPTILDEGEGRVILSVPSAITSASAAQRRGRVGRNPSQIGDEYHYGGGTSEDDTMLAHWTEAKILL 550 (673)
T ss_dssp CC-CSEEEECCEECCEEEECSTTCEEEECCSEECCHHHHHHHHTTSSCCSSCCCEEEEECSCCCCCCTTBHHHHHHHHHH
T ss_pred eC-CcEEEECCCcccceeeecccccceecccCCCCHHHHHHHhhccCCCCCCCCEEEEEEecCChhHHHHHHHHHHHHhh
Confidence 99 999998 67899999999999999999 89999999974 22355566666555543
Q ss_pred hcccC
Q 007814 517 AKQRI 521 (588)
Q Consensus 517 ~~~~~ 521 (588)
....+
T Consensus 551 ~~~~~ 555 (673)
T 2wv9_A 551 DNIHL 555 (673)
T ss_dssp HTSCB
T ss_pred hhccC
Confidence 33333
No 47
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=100.00 E-value=6.1e-41 Score=366.68 Aligned_cols=278 Identities=23% Similarity=0.231 Sum_probs=214.7
Q ss_pred CCcHHHHHHHHHHhcCCCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEEEEEcCCHHHHHHHHHHHHHHhh
Q 007814 165 QPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFCLIVCPSRELARQTYEVVEQFLT 244 (588)
Q Consensus 165 ~p~~~Q~~~i~~il~g~dvii~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Q~~~~~~~~~~ 244 (588)
.++++|.++++.+..+++++++||||||||++|.+|++. .+.++||++|||+||.|+++.+.+.+
T Consensus 217 P~~~~q~~i~~~L~~~~~vlv~ApTGSGKT~a~~l~ll~--------------~g~~vLVl~PTReLA~Qia~~l~~~~- 281 (666)
T 3o8b_A 217 PVFTDNSSPPAVPQSFQVAHLHAPTGSGKSTKVPAAYAA--------------QGYKVLVLNPSVAATLGFGAYMSKAH- 281 (666)
T ss_dssp CSCCCCCSCCCCCSSCEEEEEECCTTSCTTTHHHHHHHH--------------TTCCEEEEESCHHHHHHHHHHHHHHH-
T ss_pred CcHHHHHHHHHHHHcCCeEEEEeCCchhHHHHHHHHHHH--------------CCCeEEEEcchHHHHHHHHHHHHHHh-
Confidence 345666666666678899999999999999999998874 35689999999999999999887765
Q ss_pred cccccCCCCceEEEEEcCcchHHHHHHHhcCCcEEEeChHHHHHHHHcccCCCCCcceeEecCcccccccCcHHHHHHHH
Q 007814 245 PMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMNLDNCRYLTLDEADRLVDLGFEDDIREVF 324 (588)
Q Consensus 245 ~~~~~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~L~~~l~~~~~~l~~~~~lViDEah~l~~~~~~~~i~~i~ 324 (588)
+..+...+|+.. +..+++|+|+||++| +....+.++++++||||||| +++++|...+..++
T Consensus 282 --------g~~vg~~vG~~~-------~~~~~~IlV~TPGrL---l~~~~l~l~~l~~lVlDEAH-~l~~~~~~~l~~Il 342 (666)
T 3o8b_A 282 --------GIDPNIRTGVRT-------ITTGAPVTYSTYGKF---LADGGCSGGAYDIIICDECH-STDSTTILGIGTVL 342 (666)
T ss_dssp --------SCCCEEECSSCE-------ECCCCSEEEEEHHHH---HHTTSCCTTSCSEEEETTTT-CCSHHHHHHHHHHH
T ss_pred --------CCCeeEEECcEe-------ccCCCCEEEECcHHH---HhCCCcccCcccEEEEccch-hcCccHHHHHHHHH
Confidence 455666777754 245689999999998 45667788899999999995 56677888899999
Q ss_pred Hhhhhcce--eEEEecccchHHHHHHHHhcCCCeEEEecCCCCcccceEEEeeehhhHHHHHHHHHHhhcCCCCEEEEeC
Q 007814 325 DHFKAQRQ--TLLFSATMPTKIQNFARSALVKPVTVNVGRAGAANLDVIQEVEYVKQEAKIVYLLECLQKTPPPVLIFCE 402 (588)
Q Consensus 325 ~~~~~~~q--~l~~SAT~~~~i~~~~~~~l~~p~~i~~~~~~~~~~~~~~~~~~~~~~~k~~~ll~~l~~~~~~viIF~~ 402 (588)
+.++..+| +++||||++..+. ...+....+...... .. .+...... .-...++++||||+
T Consensus 343 ~~l~~~~~~llil~SAT~~~~i~------~~~p~i~~v~~~~~~---~i---~~~~~~~~------l~~~~~~~vLVFv~ 404 (666)
T 3o8b_A 343 DQAETAGARLVVLATATPPGSVT------VPHPNIEEVALSNTG---EI---PFYGKAIP------IEAIRGGRHLIFCH 404 (666)
T ss_dssp HHTTTTTCSEEEEEESSCTTCCC------CCCTTEEEEECBSCS---SE---EETTEEEC------GGGSSSSEEEEECS
T ss_pred HhhhhcCCceEEEECCCCCcccc------cCCcceEEEeecccc---hh---HHHHhhhh------hhhccCCcEEEEeC
Confidence 99887777 6778999997421 112211111100000 00 11100000 01124679999999
Q ss_pred ccccHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhcCCcEEEEEcCccccCCCCCCcceEE----------ecC--
Q 007814 403 NKADVDDIHEYLLLKGVEAVAVHGGKDQEEREYAISSFKAGKKDVLVATDVASKGLDFPDIQHVI----------NYD-- 470 (588)
Q Consensus 403 s~~~~~~l~~~L~~~g~~~~~ihg~~~~~~R~~~~~~f~~g~~~vLVaT~~~~~GlDip~v~~VI----------~~~-- 470 (588)
+++.++.+++.|...|+.+..+||++++.+ |.++..+|||||+++++|||++ +++|| |||
T Consensus 405 Tr~~ae~la~~L~~~g~~v~~lHG~l~q~e-------r~~~~~~VLVATdVaerGIDId-V~~VI~~Gl~~~~ViNyDyd 476 (666)
T 3o8b_A 405 SKKKCDELAAKLSGLGINAVAYYRGLDVSV-------IPTIGDVVVVATDALMTGYTGD-FDSVIDCNTCVTQTVDFSLD 476 (666)
T ss_dssp CHHHHHHHHHHHHTTTCCEEEECTTSCGGG-------SCSSSCEEEEECTTHHHHCCCC-BSEEEECCEEEEEEEECCCS
T ss_pred CHHHHHHHHHHHHhCCCcEEEecCCCCHHH-------HHhCCCcEEEECChHHccCCCC-CcEEEecCcccccccccccc
Confidence 999999999999999999999999999875 5567779999999999999997 99988 677
Q ss_pred ---------CCCChhHHHHHhcccccCCCccEEEEEecCCCCh
Q 007814 471 ---------MPAEIENYVHRIGRTGRCGKTGIATTFINKNQSE 504 (588)
Q Consensus 471 ---------~p~s~~~y~qriGRagR~g~~g~~~~~~~~~~~~ 504 (588)
+|.+.++|+||+||||| |+.|. ++|+++.+..
T Consensus 477 P~~gl~~~~~P~s~~syiQRiGRtGR-g~~G~-i~lvt~~e~~ 517 (666)
T 3o8b_A 477 PTFTIETTTVPQDAVSRSQRRGRTGR-GRRGI-YRFVTPGERP 517 (666)
T ss_dssp SSCEEEEEEEECBHHHHHHHHTTBCS-SSCEE-EEESCCCCBC
T ss_pred cccccccccCcCCHHHHHHHhccCCC-CCCCE-EEEEecchhh
Confidence 89999999999999999 99999 9999887543
No 48
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=100.00 E-value=8.7e-40 Score=369.42 Aligned_cols=334 Identities=17% Similarity=0.192 Sum_probs=246.2
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHh-cCCCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCC
Q 007814 139 PPPIKNFKDMRFPEPILKKLKAKGIVQPTPIQVQGLPVVL-SGRDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPG 217 (588)
Q Consensus 139 p~p~~~f~~~~l~~~l~~~l~~~g~~~p~~~Q~~~i~~il-~g~dvii~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~ 217 (588)
+.++.+|.++++++.+.+.+...+ ..|+++|+++|+.++ .+++++++||||||||+ ++|++...... ..+
T Consensus 68 ~~~~~~f~~~~l~~~~~~~l~~r~-~lP~~~q~~~i~~~l~~~~~vii~gpTGSGKTt--llp~ll~~~~~------~~~ 138 (773)
T 2xau_A 68 DGKINPFTGREFTPKYVDILKIRR-ELPVHAQRDEFLKLYQNNQIMVFVGETGSGKTT--QIPQFVLFDEM------PHL 138 (773)
T ss_dssp HSSBCTTTCSBCCHHHHHHHHHHT-TSGGGGGHHHHHHHHHHCSEEEEECCTTSSHHH--HHHHHHHHHHC------GGG
T ss_pred cCCCCCccccCCCHHHHHHHHHhh-cCChHHHHHHHHHHHhCCCeEEEECCCCCCHHH--HHHHHHHHhcc------ccC
Confidence 347789999999999999999988 789999999999988 45689999999999997 56666322110 012
Q ss_pred CCCEEEEEcCCHHHHHHHHHHHHHHhhcccccCCCCceEEEEEcCcchHHHHHHHhcCCcEEEeChHHHHHHHHcccCCC
Q 007814 218 EGPFCLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMNL 297 (588)
Q Consensus 218 ~~~~~Lil~Ptr~La~Q~~~~~~~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~L~~~l~~~~~~l 297 (588)
.++.++|++|+++||.|+++.+...+... .+..+......... ...+.+|+|+|||++...+... ..+
T Consensus 139 ~g~~ilvl~P~r~La~q~~~~l~~~~~~~-----v~~~vG~~i~~~~~------~~~~~~I~v~T~G~l~r~l~~~-~~l 206 (773)
T 2xau_A 139 ENTQVACTQPRRVAAMSVAQRVAEEMDVK-----LGEEVGYSIRFENK------TSNKTILKYMTDGMLLREAMED-HDL 206 (773)
T ss_dssp GTCEEEEEESCHHHHHHHHHHHHHHTTCC-----BTTTEEEEETTEEE------CCTTCSEEEEEHHHHHHHHHHS-TTC
T ss_pred CCceEEecCchHHHHHHHHHHHHHHhCCc-----hhheecceeccccc------cCCCCCEEEECHHHHHHHHhhC-ccc
Confidence 36789999999999999998776654210 01222221111110 1135799999999998877664 458
Q ss_pred CCcceeEecCccc-ccccCc-HHHHHHHHHhhhhcceeEEEecccchHHHHHHHHhcCCCeEEEecCCCCcccceEEEee
Q 007814 298 DNCRYLTLDEADR-LVDLGF-EDDIREVFDHFKAQRQTLLFSATMPTKIQNFARSALVKPVTVNVGRAGAANLDVIQEVE 375 (588)
Q Consensus 298 ~~~~~lViDEah~-l~~~~~-~~~i~~i~~~~~~~~q~l~~SAT~~~~i~~~~~~~l~~p~~i~~~~~~~~~~~~~~~~~ 375 (588)
.++++|||||+|. +++..+ ...+..+... .+..|+++||||++.. .+. .++.+...+.+.... ..+.+.+.
T Consensus 207 ~~~~~lIlDEah~R~ld~d~~~~~l~~l~~~-~~~~~iIl~SAT~~~~--~l~-~~~~~~~vi~v~gr~---~pv~~~~~ 279 (773)
T 2xau_A 207 SRYSCIILDEAHERTLATDILMGLLKQVVKR-RPDLKIIIMSATLDAE--KFQ-RYFNDAPLLAVPGRT---YPVELYYT 279 (773)
T ss_dssp TTEEEEEECSGGGCCHHHHHHHHHHHHHHHH-CTTCEEEEEESCSCCH--HHH-HHTTSCCEEECCCCC---CCEEEECC
T ss_pred cCCCEEEecCccccccchHHHHHHHHHHHHh-CCCceEEEEeccccHH--HHH-HHhcCCCcccccCcc---cceEEEEe
Confidence 8999999999995 655322 1223333332 3568999999999753 343 444444444433221 23333332
Q ss_pred ehhhH----HHHHHHHHHhhc-CCCCEEEEeCccccHHHHHHHHHH-----------cCCcEEEEeCCCCHHHHHHHHHH
Q 007814 376 YVKQE----AKIVYLLECLQK-TPPPVLIFCENKADVDDIHEYLLL-----------KGVEAVAVHGGKDQEEREYAISS 439 (588)
Q Consensus 376 ~~~~~----~k~~~ll~~l~~-~~~~viIF~~s~~~~~~l~~~L~~-----------~g~~~~~ihg~~~~~~R~~~~~~ 439 (588)
..... ..+..++..+.. .++++||||+++..++.+++.|.. .++.+..+||++++.+|..+++.
T Consensus 280 ~~~~~~~~~~~l~~l~~~~~~~~~g~iLVF~~~~~~i~~l~~~L~~~~~~l~~~~~~~~~~v~~lhg~l~~~eR~~v~~~ 359 (773)
T 2xau_A 280 PEFQRDYLDSAIRTVLQIHATEEAGDILLFLTGEDEIEDAVRKISLEGDQLVREEGCGPLSVYPLYGSLPPHQQQRIFEP 359 (773)
T ss_dssp SSCCSCHHHHHHHHHHHHHHHSCSCEEEEECSCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECTTCCHHHHGGGGSC
T ss_pred cCCchhHHHHHHHHHHHHHHhcCCCCEEEECCCHHHHHHHHHHHHHHHHhhcccccCCCeEEEEeCCCCCHHHHHHHHhh
Confidence 22222 223333443333 577999999999999999999975 57889999999999999999999
Q ss_pred Hh-----cCCcEEEEEcCccccCCCCCCcceEEecCC------------------CCChhHHHHHhcccccCCCccEEEE
Q 007814 440 FK-----AGKKDVLVATDVASKGLDFPDIQHVINYDM------------------PAEIENYVHRIGRTGRCGKTGIATT 496 (588)
Q Consensus 440 f~-----~g~~~vLVaT~~~~~GlDip~v~~VI~~~~------------------p~s~~~y~qriGRagR~g~~g~~~~ 496 (588)
|. +|..+|||||+++++|||+|++++||++++ |.|..+|+||+|||||. ..|.|+.
T Consensus 360 f~~~~~~~g~~kVlVAT~iae~GidIp~v~~VId~g~~k~~~yd~~~g~~~L~~~p~S~~s~~QR~GRaGR~-~~G~~~~ 438 (773)
T 2xau_A 360 APESHNGRPGRKVVISTNIAETSLTIDGIVYVVDPGFSKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRT-RPGKCFR 438 (773)
T ss_dssp CCCCSSSSCCEEEEEECTHHHHTCCCTTEEEEEECSEEEEEEEETTTTEEEEEEEECCHHHHHHHHHGGGSS-SSEEEEE
T ss_pred cccccCCCCceEEEEeCcHHHhCcCcCCeEEEEeCCCccceeeccccCccccccccCCHHHHHhhccccCCC-CCCEEEE
Confidence 99 999999999999999999999999999988 88999999999999999 8999999
Q ss_pred EecCC
Q 007814 497 FINKN 501 (588)
Q Consensus 497 ~~~~~ 501 (588)
|+++.
T Consensus 439 l~~~~ 443 (773)
T 2xau_A 439 LYTEE 443 (773)
T ss_dssp SSCHH
T ss_pred EecHH
Confidence 99754
No 49
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=100.00 E-value=2.8e-39 Score=349.17 Aligned_cols=293 Identities=23% Similarity=0.214 Sum_probs=220.6
Q ss_pred CCCcHHHHHHHHHHhcCCCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEEEEEcCCHHHHHHHHHHHHHHh
Q 007814 164 VQPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFCLIVCPSRELARQTYEVVEQFL 243 (588)
Q Consensus 164 ~~p~~~Q~~~i~~il~g~dvii~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Q~~~~~~~~~ 243 (588)
..|+|+|.++++.++.++++++++|||+|||++|++++... +.++|||||+++|+.|+.+.+.+|
T Consensus 92 ~~l~~~Q~~ai~~i~~~~~~ll~~~TGsGKT~~~l~~i~~~--------------~~~~Lvl~P~~~L~~Q~~~~~~~~- 156 (472)
T 2fwr_A 92 ISLRDYQEKALERWLVDKRGCIVLPTGSGKTHVAMAAINEL--------------STPTLIVVPTLALAEQWKERLGIF- 156 (472)
T ss_dssp CCBCHHHHHHHHHHTTTTEEEEECCTTSCHHHHHHHHHHHH--------------CSCEEEEESSHHHHHHHHHHGGGG-
T ss_pred CCcCHHHHHHHHHHHhcCCEEEEeCCCCCHHHHHHHHHHHc--------------CCCEEEEECCHHHHHHHHHHHHhC-
Confidence 47999999999999999999999999999999999987743 457999999999999999999885
Q ss_pred hcccccCCCCce-EEEEEcCcchHHHHHHHhcCCcEEEeChHHHHHHHHcccCCCCCcceeEecCcccccccCcHHHHHH
Q 007814 244 TPMRDAGYPDLR-TLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMNLDNCRYLTLDEADRLVDLGFEDDIRE 322 (588)
Q Consensus 244 ~~~~~~~~~~i~-~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~L~~~l~~~~~~l~~~~~lViDEah~l~~~~~~~~i~~ 322 (588)
+++ +..++|+... ..+|+|+||+.+...+..- ...+++|||||||++.+.+|..
T Consensus 157 ---------~~~~v~~~~g~~~~---------~~~Ivv~T~~~l~~~~~~~---~~~~~liIvDEaH~~~~~~~~~---- 211 (472)
T 2fwr_A 157 ---------GEEYVGEFSGRIKE---------LKPLTVSTYDSAYVNAEKL---GNRFMLLIFDEVHHLPAESYVQ---- 211 (472)
T ss_dssp ---------CGGGEEEBSSSCBC---------CCSEEEEEHHHHHHTHHHH---TTTCSEEEEETGGGTTSTTTHH----
T ss_pred ---------CCcceEEECCCcCC---------cCCEEEEEcHHHHHHHHHh---cCCCCEEEEECCcCCCChHHHH----
Confidence 567 7788877543 3789999999987665421 2458999999999999887743
Q ss_pred HHHhhhhcceeEEEecccch-------------------HHHHHHHHhcCCCeE--EEecCCCC----------------
Q 007814 323 VFDHFKAQRQTLLFSATMPT-------------------KIQNFARSALVKPVT--VNVGRAGA---------------- 365 (588)
Q Consensus 323 i~~~~~~~~q~l~~SAT~~~-------------------~i~~~~~~~l~~p~~--i~~~~~~~---------------- 365 (588)
++..+ ...+++++|||+.. ...++...++..+.. +.+.....
T Consensus 212 ~~~~~-~~~~~l~lSATp~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 290 (472)
T 2fwr_A 212 IAQMS-IAPFRLGLTATFEREDGRHEILKEVVGGKVFELFPDSLAGKHLAKYTIKRIFVPLAEDERVEYEKREKVYKQFL 290 (472)
T ss_dssp HHHTC-CCSEEEEEESCCCCTTSGGGSHHHHTCCEEEECCHHHHTSCCCCSEEECCEEECCCHHHHHHTTTTTHHHHSCS
T ss_pred HHHhc-CCCeEEEEecCccCCCCHHHHHHHHhCCeEeecCHHHHhcCcCCCeEEEEEEcCCCHHHHHHHHHHHHHHHHHH
Confidence 44444 35679999999973 122332222222211 11110000
Q ss_pred --------cccceEEEe---------------------eehhhHHHHHHHHHHhhc-CCCCEEEEeCccccHHHHHHHHH
Q 007814 366 --------ANLDVIQEV---------------------EYVKQEAKIVYLLECLQK-TPPPVLIFCENKADVDDIHEYLL 415 (588)
Q Consensus 366 --------~~~~~~~~~---------------------~~~~~~~k~~~ll~~l~~-~~~~viIF~~s~~~~~~l~~~L~ 415 (588)
....+.+.+ .......++..+.+.+.. .+.++||||++...++.+++.|
T Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~k~lvF~~~~~~~~~l~~~l- 369 (472)
T 2fwr_A 291 RARGITLRRAEDFNKIVMASGYDERAYEALRAWEEARRIAFNSKNKIRKLREILERHRKDKIIIFTRHNELVYRISKVF- 369 (472)
T ss_dssp SSCCCTTTCCSSSTTTTTTTCCSSSSSTTTHHHHHHHHHHHSCSHHHHHHHHHHHHTSSSCBCCBCSCHHHHHHHHHHT-
T ss_pred HhcCccccchhhHHHHHHHhccCHHHHHHHHHHHHHHHHhhcChHHHHHHHHHHHhCCCCcEEEEECCHHHHHHHHHHh-
Confidence 000000000 001123345555555554 4679999999999999999988
Q ss_pred HcCCcEEEEeCCCCHHHHHHHHHHHhcCCcEEEEEcCccccCCCCCCcceEEecCCCCChhHHHHHhcccccCCCc-c--
Q 007814 416 LKGVEAVAVHGGKDQEEREYAISSFKAGKKDVLVATDVASKGLDFPDIQHVINYDMPAEIENYVHRIGRTGRCGKT-G-- 492 (588)
Q Consensus 416 ~~g~~~~~ihg~~~~~~R~~~~~~f~~g~~~vLVaT~~~~~GlDip~v~~VI~~~~p~s~~~y~qriGRagR~g~~-g-- 492 (588)
.+..+||+++..+|..+++.|++|+.+|||||+++++|+|+|++++||+++.|+++..|+||+||+||.|+. +
T Consensus 370 ----~~~~~~g~~~~~~R~~~~~~F~~g~~~vLv~T~~~~~Gldlp~~~~Vi~~~~~~s~~~~~Q~~GR~~R~g~~k~~~ 445 (472)
T 2fwr_A 370 ----LIPAITHRTSREEREEILEGFRTGRFRAIVSSQVLDEGIDVPDANVGVIMSGSGSAREYIQRLGRILRPSKGKKEA 445 (472)
T ss_dssp ----TCCBCCSSSCSHHHHTHHHHHHHSSCSBCBCSSCCCSSSCSCCBSEEEEECCSSCCHHHHHHHHHSBCCCTTTCCE
T ss_pred ----CcceeeCCCCHHHHHHHHHHHhCCCCCEEEEcCchhcCcccccCcEEEEECCCCCHHHHHHHHhhccCCCCCCceE
Confidence 366799999999999999999999999999999999999999999999999999999999999999999854 3
Q ss_pred EEEEEecCCC
Q 007814 493 IATTFINKNQ 502 (588)
Q Consensus 493 ~~~~~~~~~~ 502 (588)
..+.|++.+.
T Consensus 446 ~i~~lv~~~t 455 (472)
T 2fwr_A 446 VLYELISRGT 455 (472)
T ss_dssp EEEEEEECSC
T ss_pred EEEEEEeCCC
Confidence 4555666553
No 50
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=100.00 E-value=2.1e-39 Score=347.74 Aligned_cols=276 Identities=17% Similarity=0.184 Sum_probs=199.4
Q ss_pred HHHHHHHhcCCCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEEEEEcCCHHHHHHHHHHHHHHhhcccccC
Q 007814 171 VQGLPVVLSGRDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFCLIVCPSRELARQTYEVVEQFLTPMRDAG 250 (588)
Q Consensus 171 ~~~i~~il~g~dvii~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Q~~~~~~~~~~~~~~~~ 250 (588)
......+.++++++++||||||||++|++|++..+.. .++++||++||++||.|+++.+..+
T Consensus 12 ~~~~~~l~~~~~vlv~a~TGsGKT~~~~l~il~~~~~----------~~~~~lvl~Ptr~La~Q~~~~l~g~-------- 73 (459)
T 2z83_A 12 RGSPNMLRKRQMTVLDLHPGSGKTRKILPQIIKDAIQ----------QRLRTAVLAPTRVVAAEMAEALRGL-------- 73 (459)
T ss_dssp ---CGGGSTTCEEEECCCTTSCTTTTHHHHHHHHHHH----------TTCCEEEEECSHHHHHHHHHHTTTS--------
T ss_pred HHHHHHHhcCCcEEEECCCCCCHHHHHHHHHHHHHHh----------CCCcEEEECchHHHHHHHHHHhcCc--------
Confidence 3333445678999999999999999999999988764 4678999999999999999887632
Q ss_pred CCCceEEEEEcCcchHHHHHHHhcCCcEEEeChHHHHHHHHcccCCCCCcceeEecCccc-----ccccCcHHHHHHHHH
Q 007814 251 YPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMNLDNCRYLTLDEADR-----LVDLGFEDDIREVFD 325 (588)
Q Consensus 251 ~~~i~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~L~~~l~~~~~~l~~~~~lViDEah~-----l~~~~~~~~i~~i~~ 325 (588)
.+....+..... -..+.-+.++|.+.+...+... ..++++++|||||||+ +..++|.....
T Consensus 74 ----~v~~~~~~~~~~-----~t~~~~i~~~~~~~l~~~l~~~-~~l~~~~~iViDEaH~~~~~~~~~~~~~~~~~---- 139 (459)
T 2z83_A 74 ----PVRYQTSAVQRE-----HQGNEIVDVMCHATLTHRLMSP-NRVPNYNLFVMDEAHFTDPASIAARGYIATKV---- 139 (459)
T ss_dssp ----CEEECC-------------CCCSEEEEEHHHHHHHHHSC-C-CCCCSEEEESSTTCCSHHHHHHHHHHHHHH----
T ss_pred ----eEeEEecccccC-----CCCCcEEEEEchHHHHHHhhcc-ccccCCcEEEEECCccCCchhhHHHHHHHHHh----
Confidence 222111111100 1233567788988886666543 5588999999999998 44444322211
Q ss_pred hhhhcceeEEEecccchHHHHHHHHhcCCCeEEEecCCCCcccceEEEeeehhhHHHHHHHHHHhhcCCCCEEEEeCccc
Q 007814 326 HFKAQRQTLLFSATMPTKIQNFARSALVKPVTVNVGRAGAANLDVIQEVEYVKQEAKIVYLLECLQKTPPPVLIFCENKA 405 (588)
Q Consensus 326 ~~~~~~q~l~~SAT~~~~i~~~~~~~l~~p~~i~~~~~~~~~~~~~~~~~~~~~~~k~~~ll~~l~~~~~~viIF~~s~~ 405 (588)
.....|+++||||++..+..+... ..|+......... .. ...++..+.+.++++||||+++.
T Consensus 140 -~~~~~~~il~SAT~~~~~~~~~~~--~~pi~~~~~~~~~--~~-------------~~~~~~~l~~~~~~~LVF~~s~~ 201 (459)
T 2z83_A 140 -ELGEAAAIFMTATPPGTTDPFPDS--NAPIHDLQDEIPD--RA-------------WSSGYEWITEYAGKTVWFVASVK 201 (459)
T ss_dssp -HTTSCEEEEECSSCTTCCCSSCCC--SSCEEEEECCCCS--SC-------------CSSCCHHHHHCCSCEEEECSCHH
T ss_pred -ccCCccEEEEEcCCCcchhhhccC--CCCeEEecccCCc--ch-------------hHHHHHHHHhcCCCEEEEeCChH
Confidence 135789999999999764333221 2333221110000 00 00112233345789999999999
Q ss_pred cHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhcCCcEEEEEcCccccCCCCCCcceEEe-----------------
Q 007814 406 DVDDIHEYLLLKGVEAVAVHGGKDQEEREYAISSFKAGKKDVLVATDVASKGLDFPDIQHVIN----------------- 468 (588)
Q Consensus 406 ~~~~l~~~L~~~g~~~~~ihg~~~~~~R~~~~~~f~~g~~~vLVaT~~~~~GlDip~v~~VI~----------------- 468 (588)
.++.+++.|...|+.+..+||. +|..+++.|++|+.+|||||+++++|+|+|+ ++||+
T Consensus 202 ~~~~l~~~L~~~g~~v~~lh~~----~R~~~~~~f~~g~~~iLVaT~v~~~GiDip~-~~VI~~G~~~~~~~~~~~~~~~ 276 (459)
T 2z83_A 202 MGNEIAMCLQRAGKKVIQLNRK----SYDTEYPKCKNGDWDFVITTDISEMGANFGA-SRVIDCRKSVKPTILEEGEGRV 276 (459)
T ss_dssp HHHHHHHHHHHTTCCEEEESTT----CCCCCGGGSSSCCCSEEEESSCC---CCCSC-SEEEECCEECCEEEECSSSCEE
T ss_pred HHHHHHHHHHhcCCcEEecCHH----HHHHHHhhccCCCceEEEECChHHhCeecCC-CEEEECCccccccccccccccc
Confidence 9999999999999999999995 6778999999999999999999999999999 99999
Q ss_pred ---cCCCCChhHHHHHhcccccCCC-ccEEEEEecCC
Q 007814 469 ---YDMPAEIENYVHRIGRTGRCGK-TGIATTFINKN 501 (588)
Q Consensus 469 ---~~~p~s~~~y~qriGRagR~g~-~g~~~~~~~~~ 501 (588)
|++|.|..+|+||+|||||.|. .|.+++|+...
T Consensus 277 ~~~~d~p~s~~~~~QR~GRaGR~g~~~G~~~~~~~~~ 313 (459)
T 2z83_A 277 ILGNPSPITSASAAQRRGRVGRNPNQVGDEYHYGGAT 313 (459)
T ss_dssp EECSCEECCHHHHHHHHTTSSCCTTCCCEEEEECSCC
T ss_pred ccccCCCCCHHHHHHhccccCCCCCCCCeEEEEEccc
Confidence 7799999999999999999997 99999999875
No 51
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=100.00 E-value=9e-38 Score=309.03 Aligned_cols=238 Identities=38% Similarity=0.648 Sum_probs=200.8
Q ss_pred cCeEeecCCCCC--CCCCCCCCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCCEEEEecCCchHhHHHHHHHHHHHH
Q 007814 129 WHIIVDGEDIPP--PIKNFKDMRFPEPILKKLKAKGIVQPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPMIMIAM 206 (588)
Q Consensus 129 ~~i~v~g~~~p~--p~~~f~~~~l~~~l~~~l~~~g~~~p~~~Q~~~i~~il~g~dvii~a~TGsGKTl~~~lp~l~~~~ 206 (588)
..+.+.|...|. ++.+|+++++++.++++|...||..|+|+|.++++.+++|+|+++++|||||||++|++|++..+.
T Consensus 7 ~~~~~~~~~~~~~~~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~l~~a~TGsGKT~~~~~~~l~~l~ 86 (253)
T 1wrb_A 7 IPVSVTGPDYSATNVIENFDELKLDPTIRNNILLASYQRPTPIQKNAIPAILEHRDIMACAQTGSGKTAAFLIPIINHLV 86 (253)
T ss_dssp CCCCEECCSSSCCSCCCSSGGGSCCCSTTTTTTTTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CceeeeCCCCCCCCccCCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHH
Confidence 346678888887 899999999999999999999999999999999999999999999999999999999999998876
Q ss_pred hhcccC-CCCCCCCCEEEEEcCCHHHHHHHHHHHHHHhhcccccCCCCceEEEEEcCcchHHHHHHHhcCCcEEEeChHH
Q 007814 207 HEEMMM-PIVPGEGPFCLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGR 285 (588)
Q Consensus 207 ~~~~~~-~~~~~~~~~~Lil~Ptr~La~Q~~~~~~~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~ 285 (588)
...... ......++++|||+||++|+.|+++.+.+++... ++++..++||.+...+...+..+++|+|+||++
T Consensus 87 ~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~------~~~~~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~ 160 (253)
T 1wrb_A 87 CQDLNQQRYSKTAYPKCLILAPTRELAIQILSESQKFSLNT------PLRSCVVYGGADTHSQIREVQMGCHLLVATPGR 160 (253)
T ss_dssp TTCC------CCBCCSEEEECSSHHHHHHHHHHHHHHHTTS------SCCEEEECSSSCSHHHHHHHSSCCSEEEECHHH
T ss_pred hhccccccccccCCceEEEEECCHHHHHHHHHHHHHHhccC------CceEEEEECCCCHHHHHHHhCCCCCEEEECHHH
Confidence 532110 0112346789999999999999999999987644 688899999998888888888899999999999
Q ss_pred HHHHHHcccCCCCCcceeEecCcccccccCcHHHHHHHHHhh--hh--cceeEEEecccchHHHHHHHHhcCCCeEEEec
Q 007814 286 LKDMLAKKKMNLDNCRYLTLDEADRLVDLGFEDDIREVFDHF--KA--QRQTLLFSATMPTKIQNFARSALVKPVTVNVG 361 (588)
Q Consensus 286 L~~~l~~~~~~l~~~~~lViDEah~l~~~~~~~~i~~i~~~~--~~--~~q~l~~SAT~~~~i~~~~~~~l~~p~~i~~~ 361 (588)
|.+++......+..+++||+||||++.+++|...+..++..+ +. .+|+++||||+++.+..+++.++.+|+.+.++
T Consensus 161 l~~~l~~~~~~~~~~~~lViDEah~~~~~~~~~~~~~i~~~~~~~~~~~~q~l~~SAT~~~~~~~~~~~~l~~~~~i~~~ 240 (253)
T 1wrb_A 161 LVDFIEKNKISLEFCKYIVLDEADRMLDMGFEPQIRKIIEESNMPSGINRQTLMFSATFPKEIQKLAADFLYNYIFMTVG 240 (253)
T ss_dssp HHHHHHTTSBCCTTCCEEEEETHHHHHHTTCHHHHHHHHHSSCCCCGGGCEEEEEESSCCHHHHHHHHHHCSSCEEEEEC
T ss_pred HHHHHHcCCCChhhCCEEEEeCHHHHHhCchHHHHHHHHhhccCCCCCCcEEEEEEEeCCHHHHHHHHHHcCCCEEEEEC
Confidence 999999888889999999999999999999999999999853 33 68999999999999999999999999999888
Q ss_pred CCCCcccceEE
Q 007814 362 RAGAANLDVIQ 372 (588)
Q Consensus 362 ~~~~~~~~~~~ 372 (588)
..+....++.|
T Consensus 241 ~~~~~~~~i~q 251 (253)
T 1wrb_A 241 RVGSTSDSIKQ 251 (253)
T ss_dssp -----------
T ss_pred CCCCCcCCcee
Confidence 77665555544
No 52
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=100.00 E-value=2e-37 Score=301.60 Aligned_cols=217 Identities=36% Similarity=0.606 Sum_probs=188.7
Q ss_pred cCCCCCCCCCCCC-CCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCCEEEEecCCchHhHHHHHHHHHHHHhhcccCC
Q 007814 135 GEDIPPPIKNFKD-MRFPEPILKKLKAKGIVQPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMP 213 (588)
Q Consensus 135 g~~~p~p~~~f~~-~~l~~~l~~~l~~~g~~~p~~~Q~~~i~~il~g~dvii~a~TGsGKTl~~~lp~l~~~~~~~~~~~ 213 (588)
+..+|.|+.+|.+ +++++.++++|.+.||.+|+|+|.++++.+++|+|++++||||||||++|++|++..+..... .
T Consensus 11 ~~~~p~p~~~f~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~l~~apTGsGKT~~~~l~~~~~l~~~~~--~ 88 (228)
T 3iuy_A 11 KRLIPKPTCRFKDAFQQYPDLLKSIIRVGILKPTPIQSQAWPIILQGIDLIVVAQTGTGKTLSYLMPGFIHLDSQPI--S 88 (228)
T ss_dssp CCCCCCCCCSHHHHHTTCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHC-------
T ss_pred cCcCCCChhhHhhhhccCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhccc--h
Confidence 4558999999999 799999999999999999999999999999999999999999999999999999987754321 1
Q ss_pred CCCCCCCEEEEEcCCHHHHHHHHHHHHHHhhcccccCCCCceEEEEEcCcchHHHHHHHhcCCcEEEeChHHHHHHHHcc
Q 007814 214 IVPGEGPFCLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKK 293 (588)
Q Consensus 214 ~~~~~~~~~Lil~Ptr~La~Q~~~~~~~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~L~~~l~~~ 293 (588)
.....++++||++||++||.|+++.+.++.. .++++..++||.....+...+.++++|+|+||++|.+++...
T Consensus 89 ~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~Tp~~l~~~~~~~ 161 (228)
T 3iuy_A 89 REQRNGPGMLVLTPTRELALHVEAECSKYSY-------KGLKSICIYGGRNRNGQIEDISKGVDIIIATPGRLNDLQMNN 161 (228)
T ss_dssp ----CCCSEEEECSSHHHHHHHHHHHHHHCC-------TTCCEEEECC------CHHHHHSCCSEEEECHHHHHHHHHTT
T ss_pred hhccCCCcEEEEeCCHHHHHHHHHHHHHhcc-------cCceEEEEECCCChHHHHHHhcCCCCEEEECHHHHHHHHHcC
Confidence 1123678899999999999999999999852 378899999999888888888889999999999999999888
Q ss_pred cCCCCCcceeEecCcccccccCcHHHHHHHHHhhhhcceeEEEecccchHHHHHHHHhcCCCeEEEe
Q 007814 294 KMNLDNCRYLTLDEADRLVDLGFEDDIREVFDHFKAQRQTLLFSATMPTKIQNFARSALVKPVTVNV 360 (588)
Q Consensus 294 ~~~l~~~~~lViDEah~l~~~~~~~~i~~i~~~~~~~~q~l~~SAT~~~~i~~~~~~~l~~p~~i~~ 360 (588)
...+.++++||+||||++.+++|...+..++..++..+|+++||||+|+.+..+++.++.+|+.+.+
T Consensus 162 ~~~~~~~~~lViDEah~~~~~~~~~~~~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~l~~p~~i~v 228 (228)
T 3iuy_A 162 SVNLRSITYLVIDEADKMLDMEFEPQIRKILLDVRPDRQTVMTSATWPDTVRQLALSYLKDPMIVYV 228 (228)
T ss_dssp CCCCTTCCEEEECCHHHHHHTTCHHHHHHHHHHSCSSCEEEEEESCCCHHHHHHHHTTCSSCEEEEC
T ss_pred CcCcccceEEEEECHHHHhccchHHHHHHHHHhCCcCCeEEEEEeeCCHHHHHHHHHHCCCCEEEeC
Confidence 8889999999999999999999999999999999999999999999999999999999999987753
No 53
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=100.00 E-value=1.7e-37 Score=330.24 Aligned_cols=270 Identities=17% Similarity=0.175 Sum_probs=195.9
Q ss_pred cCCCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEEEEEcCCHHHHHHHHHHHHHHhhcccccCCCCceEEE
Q 007814 179 SGRDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFCLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLL 258 (588)
Q Consensus 179 ~g~dvii~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Q~~~~~~~~~~~~~~~~~~~i~~~~ 258 (588)
.|+++++++|||||||++|++|++..+.. .++++||++||++||.|+++.+. ++.+..
T Consensus 1 kg~~~lv~a~TGsGKT~~~l~~~l~~~~~----------~g~~~lvl~Pt~~La~Q~~~~~~------------~~~v~~ 58 (431)
T 2v6i_A 1 KRELTVLDLHPGAGKTRRVLPQLVREAVK----------KRLRTVILAPTRVVASEMYEALR------------GEPIRY 58 (431)
T ss_dssp -CCEEEEECCTTSCTTTTHHHHHHHHHHH----------TTCCEEEEESSHHHHHHHHHHTT------------TSCEEE
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHHHh----------CCCCEEEECcHHHHHHHHHHHhC------------CCeEEE
Confidence 47899999999999999999999976654 46789999999999999887664 234444
Q ss_pred EEcCcchHHHHHHHhcCCcEEEeChHHHHHHHHcccCCCCCcceeEecCcccccccCcHHHHHHHHHhh-hhcceeEEEe
Q 007814 259 CIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMNLDNCRYLTLDEADRLVDLGFEDDIREVFDHF-KAQRQTLLFS 337 (588)
Q Consensus 259 ~~gg~~~~~~~~~l~~~~~IvV~Tp~~L~~~l~~~~~~l~~~~~lViDEah~l~~~~~~~~i~~i~~~~-~~~~q~l~~S 337 (588)
..|+... .-..+.-+.+.|.+.+...+.. ...+.++++|||||+|++ +.++......+.... +..+|+++||
T Consensus 59 ~~~~~~~-----~~~~~~~~~~~~~~~l~~~l~~-~~~~~~l~~vViDEaH~~-~~~~~~~~~~l~~~~~~~~~~~l~~S 131 (431)
T 2v6i_A 59 MTPAVQS-----ERTGNEIVDFMCHSTFTMKLLQ-GVRVPNYNLYIMDEAHFL-DPASVAARGYIETRVSMGDAGAIFMT 131 (431)
T ss_dssp C--------------CCCSEEEEEHHHHHHHHHH-TCCCCCCSEEEEESTTCC-SHHHHHHHHHHHHHHHTTSCEEEEEE
T ss_pred EecCccc-----cCCCCceEEEEchHHHHHHHhc-CccccCCCEEEEeCCccC-CccHHHHHHHHHHHhhCCCCcEEEEe
Confidence 4443221 1112456778899888766665 556889999999999997 433333333333332 4578999999
Q ss_pred cccchHHHHHHHHhcCCCeEEEecCCCCcccceEEEeeehhhHHHHHHHHHHhhcCCCCEEEEeCccccHHHHHHHHHHc
Q 007814 338 ATMPTKIQNFARSALVKPVTVNVGRAGAANLDVIQEVEYVKQEAKIVYLLECLQKTPPPVLIFCENKADVDDIHEYLLLK 417 (588)
Q Consensus 338 AT~~~~i~~~~~~~l~~p~~i~~~~~~~~~~~~~~~~~~~~~~~k~~~ll~~l~~~~~~viIF~~s~~~~~~l~~~L~~~ 417 (588)
||+++.+..+... ..|+...... .. ...+..++..+.+.++++||||+++..++.+++.|...
T Consensus 132 AT~~~~~~~~~~~--~~~i~~~~~~--------------~~-~~~~~~~~~~l~~~~~~~lVF~~~~~~~~~l~~~L~~~ 194 (431)
T 2v6i_A 132 ATPPGTTEAFPPS--NSPIIDEETR--------------IP-DKAWNSGYEWITEFDGRTVWFVHSIKQGAEIGTCLQKA 194 (431)
T ss_dssp SSCTTCCCSSCCC--SSCCEEEECC--------------CC-SSCCSSCCHHHHSCSSCEEEECSSHHHHHHHHHHHHHT
T ss_pred CCCCcchhhhcCC--CCceeecccc--------------CC-HHHHHHHHHHHHcCCCCEEEEeCCHHHHHHHHHHHHHc
Confidence 9999753322111 1111111000 00 00111223344555779999999999999999999999
Q ss_pred CCcEEEEeCCCCHHHHHHHHHHHhcCCcEEEEEcCccccCCCCCCcce-----------------EEecCCCCChhHHHH
Q 007814 418 GVEAVAVHGGKDQEEREYAISSFKAGKKDVLVATDVASKGLDFPDIQH-----------------VINYDMPAEIENYVH 480 (588)
Q Consensus 418 g~~~~~ihg~~~~~~R~~~~~~f~~g~~~vLVaT~~~~~GlDip~v~~-----------------VI~~~~p~s~~~y~q 480 (588)
++.+..+||+ +|..+++.|++|+.+|||||+++++|+|+| +.+ ||+++.|.+..+|+|
T Consensus 195 ~~~v~~lhg~----~r~~~~~~f~~g~~~vLVaT~v~e~GiDip-~~~VI~~g~~~~~v~d~~~~vi~~~~p~~~~~~~Q 269 (431)
T 2v6i_A 195 GKKVLYLNRK----TFESEYPKCKSEKWDFVITTDISEMGANFK-ADRVIDPRKTIKPILLDGRVSMQGPIAITPASAAQ 269 (431)
T ss_dssp TCCEEEESTT----THHHHTTHHHHSCCSEEEECGGGGTSCCCC-CSEEEECCEEEEEEEETTEEEEEEEEECCHHHHHH
T ss_pred CCeEEEeCCc----cHHHHHHhhcCCCCeEEEECchHHcCcccC-CcEEEecCccccceecccceeecccccCCHHHHHH
Confidence 9999999997 577899999999999999999999999999 544 678899999999999
Q ss_pred HhcccccCCC-ccEEEEEec
Q 007814 481 RIGRTGRCGK-TGIATTFIN 499 (588)
Q Consensus 481 riGRagR~g~-~g~~~~~~~ 499 (588)
|+||+||.|. .|.+++|..
T Consensus 270 r~GR~GR~g~~~~~~~~~~~ 289 (431)
T 2v6i_A 270 RRGRIGRNPEKLGDIYAYSG 289 (431)
T ss_dssp HHTTSSCCTTCCCCEEEECS
T ss_pred hhhccCCCCCCCCeEEEEcC
Confidence 9999999985 556666653
No 54
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=100.00 E-value=5.9e-37 Score=301.64 Aligned_cols=230 Identities=29% Similarity=0.540 Sum_probs=197.6
Q ss_pred HHHHHHHhcCeEeecCCCCCCCCCCCCC----CCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCCEEEEecCCchHhHH
Q 007814 121 ACDLIRKQWHIIVDGEDIPPPIKNFKDM----RFPEPILKKLKAKGIVQPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLV 196 (588)
Q Consensus 121 ~~~~~r~~~~i~v~g~~~p~p~~~f~~~----~l~~~l~~~l~~~g~~~p~~~Q~~~i~~il~g~dvii~a~TGsGKTl~ 196 (588)
+++.+|+++.+.+.|.++|.|+.+|+++ ++++.+++.|.+.||..|+|+|.++++.+++|+|++++||||||||++
T Consensus 3 ~~~~~~~~~~i~~~~~~~p~~~~~f~~l~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~l~~a~TGsGKT~~ 82 (245)
T 3dkp_A 3 KINFLRNKHKIHVQGTDLPDPIATFQQLDQEYKINSRLLQNILDAGFQMPTPIQMQAIPVMLHGRELLASAPTGSGKTLA 82 (245)
T ss_dssp HHHHHHHHTTEEEESSSCCCCCSSHHHHHHHHCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHH
T ss_pred hHHHHHHhCceEecCCCCCCcccCHHHhhhccCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHH
Confidence 4677899999999999999999999987 899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhcccCCCCCCCCCEEEEEcCCHHHHHHHHHHHHHHhhcccccCCCCceEEEEEcCcchHHHH-HHHhcC
Q 007814 197 FVLPMIMIAMHEEMMMPIVPGEGPFCLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQL-EVVKRG 275 (588)
Q Consensus 197 ~~lp~l~~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Q~~~~~~~~~~~~~~~~~~~i~~~~~~gg~~~~~~~-~~l~~~ 275 (588)
|++|++..+... ...++++|||+||++|+.|+++.+.+++... ++++..++|+....... .....+
T Consensus 83 ~~l~~l~~l~~~-------~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~ 149 (245)
T 3dkp_A 83 FSIPILMQLKQP-------ANKGFRALIISPTRELASQIHRELIKISEGT------GFRIHMIHKAAVAAKKFGPKSSKK 149 (245)
T ss_dssp HHHHHHHHHCSC-------CSSSCCEEEECSSHHHHHHHHHHHHHHTTTS------CCCEECCCHHHHHHTTTSTTSCCC
T ss_pred HHHHHHHHHhhc-------ccCCceEEEEeCCHHHHHHHHHHHHHHhccc------CceEEEEecCccHHHHhhhhhcCC
Confidence 999999876431 2357789999999999999999999997654 67777777664333221 112346
Q ss_pred CcEEEeChHHHHHHHHcc--cCCCCCcceeEecCcccccc---cCcHHHHHHHHHhh-hhcceeEEEecccchHHHHHHH
Q 007814 276 VHIVVATPGRLKDMLAKK--KMNLDNCRYLTLDEADRLVD---LGFEDDIREVFDHF-KAQRQTLLFSATMPTKIQNFAR 349 (588)
Q Consensus 276 ~~IvV~Tp~~L~~~l~~~--~~~l~~~~~lViDEah~l~~---~~~~~~i~~i~~~~-~~~~q~l~~SAT~~~~i~~~~~ 349 (588)
++|+|+||++|.+++... ...+.++++||+||||++.+ .+|...+..++..+ +...|+++||||+|+.+..+++
T Consensus 150 ~~I~v~Tp~~l~~~l~~~~~~~~~~~~~~lViDEah~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~SAT~~~~v~~~~~ 229 (245)
T 3dkp_A 150 FDILVTTPNRLIYLLKQDPPGIDLASVEWLVVDESDKLFEDGKTGFRDQLASIFLACTSHKVRRAMFSATFAYDVEQWCK 229 (245)
T ss_dssp CCEEEECHHHHHHHHHSSSCSCCCTTCCEEEESSHHHHHHHC--CHHHHHHHHHHHCCCTTCEEEEEESSCCHHHHHHHH
T ss_pred CCEEEECHHHHHHHHHhCCCCcccccCcEEEEeChHHhcccccccHHHHHHHHHHhcCCCCcEEEEEeccCCHHHHHHHH
Confidence 899999999999999876 46788999999999999998 46888888887765 3568999999999999999999
Q ss_pred HhcCCCeEEEecCC
Q 007814 350 SALVKPVTVNVGRA 363 (588)
Q Consensus 350 ~~l~~p~~i~~~~~ 363 (588)
.++.+|+.+.++..
T Consensus 230 ~~l~~p~~i~~~~~ 243 (245)
T 3dkp_A 230 LNLDNVISVSIGAR 243 (245)
T ss_dssp HHSSSCEEEEECC-
T ss_pred HhCCCCEEEEeCCC
Confidence 99999999988754
No 55
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=100.00 E-value=1.2e-36 Score=308.06 Aligned_cols=216 Identities=30% Similarity=0.481 Sum_probs=189.3
Q ss_pred CeEeecCCCCCC---CCCCCCCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcC--CCEEEEecCCchHhHHHHHHHHHH
Q 007814 130 HIIVDGEDIPPP---IKNFKDMRFPEPILKKLKAKGIVQPTPIQVQGLPVVLSG--RDMIGIAFTGSGKTLVFVLPMIMI 204 (588)
Q Consensus 130 ~i~v~g~~~p~p---~~~f~~~~l~~~l~~~l~~~g~~~p~~~Q~~~i~~il~g--~dvii~a~TGsGKTl~~~lp~l~~ 204 (588)
.+.+.+.+.+.| +.+|+++++++.+++.|..+||..||++|.++||.++.| +|++++||||||||++|++|++..
T Consensus 76 ~v~v~~~~~~~p~~~~~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~ai~~il~~~~~~~l~~a~TGsGKT~a~~lp~l~~ 155 (300)
T 3fmo_B 76 QVEVLQRDPNSPLYSVKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQ 155 (300)
T ss_dssp CEEEECSSTTCCCCCCCCSGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHTSSSCCCEEEECCTTSSHHHHHHHHHHHH
T ss_pred cceeccCCCCCCcCCcCCHhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCCeEEEECCCCCCccHHHHHHHHHh
Confidence 455666665555 578999999999999999999999999999999999987 999999999999999999999987
Q ss_pred HHhhcccCCCCCCCCCEEEEEcCCHHHHHHHHHHHHHHhhcccccCCCCceEEEEEcCcchHHHHHHHhcCCcEEEeChH
Q 007814 205 AMHEEMMMPIVPGEGPFCLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPG 284 (588)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Q~~~~~~~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~ 284 (588)
+... ..++++|||+|||+||.|+++.+..+.... +++.+.+++|+....... ..+++|+|+||+
T Consensus 156 l~~~--------~~~~~~lil~PtreLa~Q~~~~~~~l~~~~-----~~~~~~~~~~~~~~~~~~---~~~~~IlV~TP~ 219 (300)
T 3fmo_B 156 VEPA--------NKYPQCLCLSPTYELALQTGKVIEQMGKFY-----PELKLAYAVRGNKLERGQ---KISEQIVIGTPG 219 (300)
T ss_dssp CCTT--------SCSCCEEEECSSHHHHHHHHHHHHHHTTTS-----TTCCEEEESTTCCCCTTC---CCCCSEEEECHH
T ss_pred hhcc--------CCCceEEEEcCcHHHHHHHHHHHHHHHhhC-----CCcEEEEEeCCccHhhhh---cCCCCEEEECHH
Confidence 6432 357799999999999999999999987542 468888888887654332 456899999999
Q ss_pred HHHHHHHc-ccCCCCCcceeEecCcccccc-cCcHHHHHHHHHhhhhcceeEEEecccchHHHHHHHHhcCCCeEEEec
Q 007814 285 RLKDMLAK-KKMNLDNCRYLTLDEADRLVD-LGFEDDIREVFDHFKAQRQTLLFSATMPTKIQNFARSALVKPVTVNVG 361 (588)
Q Consensus 285 ~L~~~l~~-~~~~l~~~~~lViDEah~l~~-~~~~~~i~~i~~~~~~~~q~l~~SAT~~~~i~~~~~~~l~~p~~i~~~ 361 (588)
+|.+++.+ +.+.++++++|||||||+|++ .+|...+..++..++..+|+++||||+++.+..+++.++.+|+.+.+.
T Consensus 220 ~l~~~l~~~~~~~l~~l~~lVlDEad~l~~~~~~~~~~~~i~~~~~~~~q~i~~SAT~~~~v~~~a~~~l~~p~~i~~~ 298 (300)
T 3fmo_B 220 TVLDWCSKLKFIDPKKIKVFVLDEADVMIATQGHQDQSIRIQRMLPRNCQMLLFSATFEDSVWKFAQKVVPDPNVIKLK 298 (300)
T ss_dssp HHHHHHTTTCCCCGGGCSEEEETTHHHHHHSTTHHHHHHHHHTTSCTTCEEEEEESCCCHHHHHHHHHHSSSCEEEEEC
T ss_pred HHHHHHHhcCCCChhhceEEEEeCHHHHhhccCcHHHHHHHHHhCCCCCEEEEEeccCCHHHHHHHHHHCCCCeEEEec
Confidence 99999976 567789999999999999998 789999999999999999999999999999999999999999988764
No 56
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=100.00 E-value=1.3e-36 Score=297.61 Aligned_cols=214 Identities=31% Similarity=0.527 Sum_probs=179.1
Q ss_pred ecCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCCEEEEecCCchHhHHHHHHHHHHHHhhcccCC
Q 007814 134 DGEDIPPPIKNFKDMRFPEPILKKLKAKGIVQPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMP 213 (588)
Q Consensus 134 ~g~~~p~p~~~f~~~~l~~~l~~~l~~~g~~~p~~~Q~~~i~~il~g~dvii~a~TGsGKTl~~~lp~l~~~~~~~~~~~ 213 (588)
...+.|+++.+|+++++++.++++|.+.||..|+++|.++++.+++|+|+++++|||||||++|++|++..+...
T Consensus 21 ~~~~~~~~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~ai~~i~~~~~~li~apTGsGKT~~~~l~~l~~l~~~----- 95 (237)
T 3bor_A 21 IESNWNEIVDNFDDMNLKESLLRGIYAYGFEKPSAIQQRAIIPCIKGYDVIAQAQSGTGKTATFAISILQQLEIE----- 95 (237)
T ss_dssp ------CCCCSGGGSCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEECCCSSHHHHHHHHHHHHHHCCTT-----
T ss_pred ccCCCCCccCChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHHHhc-----
Confidence 345577889999999999999999999999999999999999999999999999999999999999999875331
Q ss_pred CCCCCCCEEEEEcCCHHHHHHHHHHHHHHhhcccccCCCCceEEEEEcCcchHHHHHHHhcC-CcEEEeChHHHHHHHHc
Q 007814 214 IVPGEGPFCLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRG-VHIVVATPGRLKDMLAK 292 (588)
Q Consensus 214 ~~~~~~~~~Lil~Ptr~La~Q~~~~~~~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~~~-~~IvV~Tp~~L~~~l~~ 292 (588)
..++++||++||++|+.|+++.+.+++... ++.+..++||.....+...+..+ ++|+|+||++|.+++..
T Consensus 96 ---~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~------~~~~~~~~g~~~~~~~~~~l~~~~~~Ilv~Tp~~l~~~l~~ 166 (237)
T 3bor_A 96 ---FKETQALVLAPTRELAQQIQKVILALGDYM------GATCHACIGGTNVRNEMQKLQAEAPHIVVGTPGRVFDMLNR 166 (237)
T ss_dssp ---SCSCCEEEECSSHHHHHHHHHHHHHHTTTT------TCCEEEECC-------------CCCSEEEECHHHHHHHHHT
T ss_pred ---CCCceEEEEECcHHHHHHHHHHHHHHhhhc------CceEEEEECCCchHHHHHHHhcCCCCEEEECHHHHHHHHHh
Confidence 246789999999999999999999997644 67888899998877777767665 89999999999999988
Q ss_pred ccCCCCCcceeEecCcccccccCcHHHHHHHHHhhhhcceeEEEecccchHHHHHHHHhcCCCeEEEec
Q 007814 293 KKMNLDNCRYLTLDEADRLVDLGFEDDIREVFDHFKAQRQTLLFSATMPTKIQNFARSALVKPVTVNVG 361 (588)
Q Consensus 293 ~~~~l~~~~~lViDEah~l~~~~~~~~i~~i~~~~~~~~q~l~~SAT~~~~i~~~~~~~l~~p~~i~~~ 361 (588)
+...+..+++||+||||++.+++|...+..++..++..+|+++||||+|+.+.++++.++.+|+.+.++
T Consensus 167 ~~~~~~~~~~lViDEah~~~~~~~~~~l~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~l~~p~~i~v~ 235 (237)
T 3bor_A 167 RYLSPKWIKMFVLDEADEMLSRGFKDQIYEIFQKLNTSIQVVLLSATMPTDVLEVTKKFMRDPIRILVK 235 (237)
T ss_dssp TSSCSTTCCEEEEESHHHHHHTTCHHHHHHHHHHSCTTCEEEEECSSCCHHHHHHHHHHCSSCEEEC--
T ss_pred CCcCcccCcEEEECCchHhhccCcHHHHHHHHHhCCCCCeEEEEEEecCHHHHHHHHHHCCCCEEEEec
Confidence 888889999999999999999999999999999999999999999999999999999999999887654
No 57
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=100.00 E-value=4.8e-36 Score=295.68 Aligned_cols=207 Identities=38% Similarity=0.649 Sum_probs=191.0
Q ss_pred CCCCCCCCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCC
Q 007814 141 PIKNFKDMRFPEPILKKLKAKGIVQPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGP 220 (588)
Q Consensus 141 p~~~f~~~~l~~~l~~~l~~~g~~~p~~~Q~~~i~~il~g~dvii~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~ 220 (588)
+..+|+++++++.+.+.|...||..|+++|.++++.+++|+|++++||||||||++|++|++..+... ..++
T Consensus 41 ~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKT~~~~~~il~~l~~~--------~~~~ 112 (249)
T 3ber_A 41 ETKTFKDLGVTDVLCEACDQLGWTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPILNALLET--------PQRL 112 (249)
T ss_dssp HHCCTGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHS--------CCSS
T ss_pred ccCCHHHcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEEcCCCCCchhHhHHHHHHHHhcC--------CCCc
Confidence 56789999999999999999999999999999999999999999999999999999999999887653 2467
Q ss_pred EEEEEcCCHHHHHHHHHHHHHHhhcccccCCCCceEEEEEcCcchHHHHHHHhcCCcEEEeChHHHHHHHHc-ccCCCCC
Q 007814 221 FCLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAK-KKMNLDN 299 (588)
Q Consensus 221 ~~Lil~Ptr~La~Q~~~~~~~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~L~~~l~~-~~~~l~~ 299 (588)
++||++||++|+.|+++.+.+++... ++++..++||.....+...+..+++|+|+||++|.+.+.. ..+.+..
T Consensus 113 ~~lil~Ptr~L~~q~~~~~~~~~~~~------~~~~~~~~g~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~l~~ 186 (249)
T 3ber_A 113 FALVLTPTRELAFQISEQFEALGSSI------GVQSAVIVGGIDSMSQSLALAKKPHIIIATPGRLIDHLENTKGFNLRA 186 (249)
T ss_dssp CEEEECSSHHHHHHHHHHHHHHHGGG------TCCEEEECTTSCHHHHHHHHHTCCSEEEECHHHHHHHHHHSTTCCCTT
T ss_pred eEEEEeCCHHHHHHHHHHHHHHhccC------CeeEEEEECCCChHHHHHHhcCCCCEEEECHHHHHHHHHcCCCcCccc
Confidence 89999999999999999999998765 7889999999988888888888999999999999998876 4567899
Q ss_pred cceeEecCcccccccCcHHHHHHHHHhhhhcceeEEEecccchHHHHHHHHhcCCCeEEEec
Q 007814 300 CRYLTLDEADRLVDLGFEDDIREVFDHFKAQRQTLLFSATMPTKIQNFARSALVKPVTVNVG 361 (588)
Q Consensus 300 ~~~lViDEah~l~~~~~~~~i~~i~~~~~~~~q~l~~SAT~~~~i~~~~~~~l~~p~~i~~~ 361 (588)
+++||+||||++.+++|...+..++..++..+|+++||||+++.+.++++.++.+|+.+.++
T Consensus 187 ~~~lViDEah~l~~~~~~~~l~~i~~~~~~~~~~l~~SAT~~~~v~~~~~~~l~~p~~i~v~ 248 (249)
T 3ber_A 187 LKYLVMDEADRILNMDFETEVDKILKVIPRDRKTFLFSATMTKKVQKLQRAALKNPVKCAVS 248 (249)
T ss_dssp CCEEEECSHHHHHHTTCHHHHHHHHHSSCSSSEEEEEESSCCHHHHHHHHHHCSSCEEEECC
T ss_pred cCEEEEcChhhhhccChHHHHHHHHHhCCCCCeEEEEeccCCHHHHHHHHHHCCCCEEEEec
Confidence 99999999999999999999999999999899999999999999999999999999987653
No 58
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=100.00 E-value=1.1e-36 Score=337.80 Aligned_cols=304 Identities=17% Similarity=0.192 Sum_probs=188.9
Q ss_pred CCCcHHHHHHHHHHhc----C-CCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEEEEEcCCHHHHHHHH-H
Q 007814 164 VQPTPIQVQGLPVVLS----G-RDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFCLIVCPSRELARQTY-E 237 (588)
Q Consensus 164 ~~p~~~Q~~~i~~il~----g-~dvii~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Q~~-~ 237 (588)
..|+|+|.++++.++. | ++++++++||||||++++..+ ..++...+... ....++++|||+||++|+.|+. +
T Consensus 177 ~~lr~~Q~~ai~~~~~~~~~~~~~~ll~~~TGsGKT~~~~~~~-~~l~~~~~~~~-~~~~~~~vlil~P~~~L~~Q~~~~ 254 (590)
T 3h1t_A 177 YSPRYYQQIAINRAVQSVLQGKKRSLITMATGTGKTVVAFQIS-WKLWSARWNRT-GDYRKPRILFLADRNVLVDDPKDK 254 (590)
T ss_dssp --CCHHHHHHHHHHHHHHHTTCSEEEEEECTTSCHHHHHHHHH-HHHHHTTCCSS-CSSSCCCEEEEEC-----------
T ss_pred CCchHHHHHHHHHHHHHHhcCCCceEEEecCCCChHHHHHHHH-HHHHhcccccc-cccCCCeEEEEeCCHHHHHHHHHH
Confidence 3699999999999885 4 669999999999999965544 44443211000 0125688999999999999999 7
Q ss_pred HHHHHhhcccccCCCCceEEEEEcCcchHHHHHHHhcCCcEEEeChHHHHHHHHc----ccCCCCCcceeEecCcccccc
Q 007814 238 VVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAK----KKMNLDNCRYLTLDEADRLVD 313 (588)
Q Consensus 238 ~~~~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~L~~~l~~----~~~~l~~~~~lViDEah~l~~ 313 (588)
.+..+. ..+..+.++. ...+.+|+|+||++|...+.. ..+....+++||+||||++..
T Consensus 255 ~~~~~~----------~~~~~~~~~~--------~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~~~~lvIiDEaH~~~~ 316 (590)
T 3h1t_A 255 TFTPFG----------DARHKIEGGK--------VVKSREIYFAIYQSIASDERRPGLYKEFPQDFFDLIIIDECHRGSA 316 (590)
T ss_dssp CCTTTC----------SSEEECCC----------CCSSCSEEEEEGGGC------CCGGGGSCTTSCSEEEESCCC----
T ss_pred HHHhcc----------hhhhhhhccC--------CCCCCcEEEEEhhhhccccccccccccCCCCccCEEEEECCccccc
Confidence 776653 2333333321 224579999999999877642 344567799999999999976
Q ss_pred cCcHHHHHHHHHhhhhcceeEEEecccchHHHHHHHHhcCCCeE-----------------E-EecCCCCc-c-------
Q 007814 314 LGFEDDIREVFDHFKAQRQTLLFSATMPTKIQNFARSALVKPVT-----------------V-NVGRAGAA-N------- 367 (588)
Q Consensus 314 ~~~~~~i~~i~~~~~~~~q~l~~SAT~~~~i~~~~~~~l~~p~~-----------------i-~~~~~~~~-~------- 367 (588)
.+ ...++.++..++. .++++||||+..........++..++. + .+...... .
T Consensus 317 ~~-~~~~~~il~~~~~-~~~l~lTATP~~~~~~~~~~~f~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 394 (590)
T 3h1t_A 317 RD-NSNWREILEYFEP-AFQIGMTATPLREDNRDTYRYFGNPIYTYSLRQGIDDGFLAPYRVHRVISEVDAAGWRPSKGD 394 (590)
T ss_dssp ------CHHHHHHSTT-SEEEEEESSCSCTTTHHHHHHSCSCSEEECHHHHHHHTSSCCEEEEEEEETTCC---------
T ss_pred cc-hHHHHHHHHhCCc-ceEEEeccccccccchhHHHHcCCceEecCHHHHhhCCccCCcEEEEeeeeeecccccccccc
Confidence 53 2566777777763 679999999874332222222222221 1 11000000 0
Q ss_pred ----cceEEEeee--------hhhHHHHHH----HHHHhh--cCCCCEEEEeCccccHHHHHHHHHHcCCc--------E
Q 007814 368 ----LDVIQEVEY--------VKQEAKIVY----LLECLQ--KTPPPVLIFCENKADVDDIHEYLLLKGVE--------A 421 (588)
Q Consensus 368 ----~~~~~~~~~--------~~~~~k~~~----ll~~l~--~~~~~viIF~~s~~~~~~l~~~L~~~g~~--------~ 421 (588)
........+ .....+... +.+.+. ...+++||||+++..|+.+++.|...+.. +
T Consensus 395 ~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~i~~~l~~~l~~~~~~~k~lVF~~~~~~a~~l~~~L~~~~~~~~~~~~~~~ 474 (590)
T 3h1t_A 395 VDRFGREIPDGEYQTKDFERVIALKARTDAFAKHLTDFMKRTDRFAKTIVFCVDQEHADEMRRALNNLNSDLSRKHPDYV 474 (590)
T ss_dssp --------------CCSHHHHHHHHHTHHHHHHHHHHHHHHHCTTSEEEEEESSHHHHHHHHHHHHHHTHHHHTTCTTSE
T ss_pred ccccccccccccCCHHHhhhHhcChHHHHHHHHHHHHHHHhcCCCccEEEEECCHHHHHHHHHHHHHhhhhhhccCCCeE
Confidence 000000000 000111111 222232 23578999999999999999999876543 7
Q ss_pred EEEeCCCCHHHHHHHHHHHhcCCcE---EEEEcCccccCCCCCCcceEEecCCCCChhHHHHHhcccccCCC
Q 007814 422 VAVHGGKDQEEREYAISSFKAGKKD---VLVATDVASKGLDFPDIQHVINYDMPAEIENYVHRIGRTGRCGK 490 (588)
Q Consensus 422 ~~ihg~~~~~~R~~~~~~f~~g~~~---vLVaT~~~~~GlDip~v~~VI~~~~p~s~~~y~qriGRagR~g~ 490 (588)
..+||.+++ +|..+++.|++|+.+ |||||+++++|+|+|++++||++++|+|+..|+||+||+||.|.
T Consensus 475 ~~i~g~~~~-~r~~~l~~F~~~~~~~~~ilvtt~~l~~GiDip~v~~Vi~~~~~~s~~~~~Q~iGR~~R~~~ 545 (590)
T 3h1t_A 475 ARVTSEEGK-IGKGHLSRFQELETSTPVILTTSQLLTTGVDAPTCKNVVLARVVNSMSEFKQIVGRGTRLRE 545 (590)
T ss_dssp EECSSTTHH-HHHHHHHHHHCTTCCCCCEEEESSTTTTTCCCTTEEEEEEESCCCCHHHHHHHHTTSCCCBG
T ss_pred EEEeCCChH-HHHHHHHHHhCCCCCCCEEEEECChhhcCccchheeEEEEEecCCChHHHHHHHhhhcccCc
Confidence 788998764 799999999998866 89999999999999999999999999999999999999999875
No 59
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=100.00 E-value=5e-36 Score=292.14 Aligned_cols=212 Identities=30% Similarity=0.495 Sum_probs=184.4
Q ss_pred cCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCCEEEEecCCchHhHHHHHHHHHHHHhhcccCCC
Q 007814 135 GEDIPPPIKNFKDMRFPEPILKKLKAKGIVQPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPI 214 (588)
Q Consensus 135 g~~~p~p~~~f~~~~l~~~l~~~l~~~g~~~p~~~Q~~~i~~il~g~dvii~a~TGsGKTl~~~lp~l~~~~~~~~~~~~ 214 (588)
+...|++..+|+++++++.+.+.|.+.||..|+++|.++++.+++|+|+++++|||||||++|++|++..+...
T Consensus 16 ~~~~~~~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~l~~a~TGsGKT~~~~l~~l~~l~~~------ 89 (230)
T 2oxc_A 16 GDVLLAEPADFESLLLSRPVLEGLRAAGFERPSPVQLKAIPLGRCGLDLIVQAKSGTGKTCVFSTIALDSLVLE------ 89 (230)
T ss_dssp --------CCGGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHCCTT------
T ss_pred CCCCCCCCCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHHHhc------
Confidence 45577888999999999999999999999999999999999999999999999999999999999999876432
Q ss_pred CCCCCCEEEEEcCCHHHHHHHHHHHHHHhhcccccCCCCceEEEEEcCcchHHHHHHHhcCCcEEEeChHHHHHHHHccc
Q 007814 215 VPGEGPFCLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKK 294 (588)
Q Consensus 215 ~~~~~~~~Lil~Ptr~La~Q~~~~~~~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~L~~~l~~~~ 294 (588)
..++++|||+||++|+.|+++.+.++.... +++++..++||.....+...+ .+++|+|+||++|.+++....
T Consensus 90 --~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~-----~~~~~~~~~g~~~~~~~~~~~-~~~~Iiv~Tp~~l~~~~~~~~ 161 (230)
T 2oxc_A 90 --NLSTQILILAPTREIAVQIHSVITAIGIKM-----EGLECHVFIGGTPLSQDKTRL-KKCHIAVGSPGRIKQLIELDY 161 (230)
T ss_dssp --SCSCCEEEECSSHHHHHHHHHHHHHHTTTS-----TTCCEEEECTTSCHHHHHHHT-TSCSEEEECHHHHHHHHHTTS
T ss_pred --CCCceEEEEeCCHHHHHHHHHHHHHHhccc-----CCceEEEEeCCCCHHHHHHhc-cCCCEEEECHHHHHHHHhcCC
Confidence 356789999999999999999999986532 378899999998877665554 468999999999999998888
Q ss_pred CCCCCcceeEecCcccccccC-cHHHHHHHHHhhhhcceeEEEecccchHHHHHHHHhcCCCeEEEe
Q 007814 295 MNLDNCRYLTLDEADRLVDLG-FEDDIREVFDHFKAQRQTLLFSATMPTKIQNFARSALVKPVTVNV 360 (588)
Q Consensus 295 ~~l~~~~~lViDEah~l~~~~-~~~~i~~i~~~~~~~~q~l~~SAT~~~~i~~~~~~~l~~p~~i~~ 360 (588)
+.+.++++||+||||++.++| |...+..++..++..+|+++||||+|+.+.+++..++.+|+.+.+
T Consensus 162 ~~~~~~~~lViDEah~~~~~~~~~~~~~~i~~~~~~~~~~l~lSAT~~~~~~~~~~~~~~~p~~i~~ 228 (230)
T 2oxc_A 162 LNPGSIRLFILDEADKLLEEGSFQEQINWIYSSLPASKQMLAVSATYPEFLANALTKYMRDPTFVRL 228 (230)
T ss_dssp SCGGGCCEEEESSHHHHHSTTSSHHHHHHHHHHSCSSCEEEEEESCCCHHHHHHHTTTCSSCEEECC
T ss_pred cccccCCEEEeCCchHhhcCcchHHHHHHHHHhCCCCCeEEEEEeccCHHHHHHHHHHcCCCeEEEc
Confidence 888999999999999999998 999999999999989999999999999999999999999987754
No 60
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=100.00 E-value=1.3e-35 Score=290.23 Aligned_cols=227 Identities=34% Similarity=0.533 Sum_probs=194.7
Q ss_pred HHHHHHHHHhcCeEeecCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCCEEEEecCCchHhHHHH
Q 007814 119 KKACDLIRKQWHIIVDGEDIPPPIKNFKDMRFPEPILKKLKAKGIVQPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFV 198 (588)
Q Consensus 119 ~~~~~~~r~~~~i~v~g~~~p~p~~~f~~~~l~~~l~~~l~~~g~~~p~~~Q~~~i~~il~g~dvii~a~TGsGKTl~~~ 198 (588)
+++++.+++.+.. ..++++.+|+++++++.+++.|.+.||..|+|+|.++++.+++|+|+++++|||||||++|+
T Consensus 6 ~~~~~~~~~~~~~-----~~~~~~~~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~li~a~TGsGKT~~~~ 80 (236)
T 2pl3_A 6 RESISRLMQNYEK-----INVNEITRFSDFPLSKKTLKGLQEAQYRLVTEIQKQTIGLALQGKDVLGAAKTGSGKTLAFL 80 (236)
T ss_dssp HHHHHHHHHTTTT-----CCGGGCSBGGGSCCCHHHHHHHHHTTCCBCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHH
T ss_pred HhHHHHHHhcccc-----CCCcccCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEEeCCCCcHHHHHH
Confidence 4455556665532 12456789999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhcccCCCCCCCCCEEEEEcCCHHHHHHHHHHHHHHhhcccccCCCCceEEEEEcCcchHHHHHHHhcCCcE
Q 007814 199 LPMIMIAMHEEMMMPIVPGEGPFCLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHI 278 (588)
Q Consensus 199 lp~l~~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Q~~~~~~~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~~~~~I 278 (588)
+|++..+..... ....++++||++||++|+.|+++.+.+++... ++++..++|+.+...+...+ .+++|
T Consensus 81 ~~~l~~l~~~~~----~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~------~~~~~~~~g~~~~~~~~~~~-~~~~i 149 (236)
T 2pl3_A 81 VPVLEALYRLQW----TSTDGLGVLIISPTRELAYQTFEVLRKVGKNH------DFSAGLIIGGKDLKHEAERI-NNINI 149 (236)
T ss_dssp HHHHHHHHHTTC----CGGGCCCEEEECSSHHHHHHHHHHHHHHTTTS------SCCEEEECCC--CHHHHHHH-TTCSE
T ss_pred HHHHHHHHhhcc----cccCCceEEEEeCCHHHHHHHHHHHHHHhCCC------CeeEEEEECCCCHHHHHHhC-CCCCE
Confidence 999988765321 12357889999999999999999999987543 68899999998877666555 46899
Q ss_pred EEeChHHHHHHHHcc-cCCCCCcceeEecCcccccccCcHHHHHHHHHhhhhcceeEEEecccchHHHHHHHHhcCCCeE
Q 007814 279 VVATPGRLKDMLAKK-KMNLDNCRYLTLDEADRLVDLGFEDDIREVFDHFKAQRQTLLFSATMPTKIQNFARSALVKPVT 357 (588)
Q Consensus 279 vV~Tp~~L~~~l~~~-~~~l~~~~~lViDEah~l~~~~~~~~i~~i~~~~~~~~q~l~~SAT~~~~i~~~~~~~l~~p~~ 357 (588)
+|+||++|.+.+... ...+.++++||+||||++.+++|...+..++..++..+|+++||||+++.+.++++.++.+|..
T Consensus 150 iv~Tp~~l~~~l~~~~~~~~~~~~~lViDEah~~~~~~~~~~~~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~~~~p~~ 229 (236)
T 2pl3_A 150 LVCTPGRLLQHMDETVSFHATDLQMLVLDEADRILDMGFADTMNAVIENLPKKRQTLLFSATQTKSVKDLARLSLKNPEY 229 (236)
T ss_dssp EEECHHHHHHHHHHCSSCCCTTCCEEEETTHHHHHHTTTHHHHHHHHHTSCTTSEEEEEESSCCHHHHHHHHHSCSSCEE
T ss_pred EEECHHHHHHHHHhcCCcccccccEEEEeChHHHhcCCcHHHHHHHHHhCCCCCeEEEEEeeCCHHHHHHHHHhCCCCEE
Confidence 999999999888764 5678899999999999999999999999999999999999999999999999999999999988
Q ss_pred EEec
Q 007814 358 VNVG 361 (588)
Q Consensus 358 i~~~ 361 (588)
+.++
T Consensus 230 i~~~ 233 (236)
T 2pl3_A 230 VWVH 233 (236)
T ss_dssp EECC
T ss_pred EEeC
Confidence 8764
No 61
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Probab=100.00 E-value=4.4e-36 Score=332.21 Aligned_cols=278 Identities=18% Similarity=0.171 Sum_probs=208.4
Q ss_pred HHHHHHHHhcCCCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEEEEEcCCHHHHHHHHHHHHHHhhccccc
Q 007814 170 QVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFCLIVCPSRELARQTYEVVEQFLTPMRDA 249 (588)
Q Consensus 170 Q~~~i~~il~g~dvii~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Q~~~~~~~~~~~~~~~ 249 (588)
|.......+.|++++++||||||||+ +++..+.. .+.++|++|||+||.|+++.+.+.
T Consensus 145 ~~~p~ar~l~rk~vlv~apTGSGKT~----~al~~l~~-----------~~~gl~l~PtR~LA~Qi~~~l~~~------- 202 (677)
T 3rc3_A 145 NWYPDARAMQRKIIFHSGPTNSGKTY----HAIQKYFS-----------AKSGVYCGPLKLLAHEIFEKSNAA------- 202 (677)
T ss_dssp GGCHHHHTSCCEEEEEECCTTSSHHH----HHHHHHHH-----------SSSEEEEESSHHHHHHHHHHHHHT-------
T ss_pred hhCHHHHhcCCCEEEEEcCCCCCHHH----HHHHHHHh-----------cCCeEEEeCHHHHHHHHHHHHHhc-------
Confidence 33344456799999999999999997 33444433 134599999999999999998876
Q ss_pred CCCCceEEEEEcCcchHHHHHHHhcCCcEEEeChHHHHHHHHcccCCCCCcceeEecCcccccccCcHHHHHHHHHhhh-
Q 007814 250 GYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMNLDNCRYLTLDEADRLVDLGFEDDIREVFDHFK- 328 (588)
Q Consensus 250 ~~~~i~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~L~~~l~~~~~~l~~~~~lViDEah~l~~~~~~~~i~~i~~~~~- 328 (588)
++++..++|+...-.. .-.+..+++++|++.+. ....+++|||||||++.+.+|+..+..++..++
T Consensus 203 ---g~~v~lltG~~~~iv~--TpGr~~~il~~T~e~~~--------l~~~v~lvVIDEaH~l~d~~~g~~~~~~l~~l~~ 269 (677)
T 3rc3_A 203 ---GVPCDLVTGEERVTVQ--PNGKQASHVSCTVEMCS--------VTTPYEVAVIDEIQMIRDPARGWAWTRALLGLCA 269 (677)
T ss_dssp ---TCCEEEECSSCEECCS--TTCCCCSEEEEEGGGCC--------SSSCEEEEEECSGGGGGCTTTHHHHHHHHHHCCE
T ss_pred ---CCcEEEEECCeeEEec--CCCcccceeEecHhHhh--------hcccCCEEEEecceecCCccchHHHHHHHHccCc
Confidence 6788889988554100 00012567777774431 246789999999999999999999999998887
Q ss_pred hcceeEEEecccchHHHHHHHHhcCCCeEEEecCCCCcccceEEEeeehhhHHHHHHHHHHhhcCCCCEEEEeCccccHH
Q 007814 329 AQRQTLLFSATMPTKIQNFARSALVKPVTVNVGRAGAANLDVIQEVEYVKQEAKIVYLLECLQKTPPPVLIFCENKADVD 408 (588)
Q Consensus 329 ~~~q~l~~SAT~~~~i~~~~~~~l~~p~~i~~~~~~~~~~~~~~~~~~~~~~~k~~~ll~~l~~~~~~viIF~~s~~~~~ 408 (588)
...+++++|||.+ .+..+.... ...+.+..... .......... +..+.....+.||||+++.+++
T Consensus 270 ~~i~il~~SAT~~-~i~~l~~~~-~~~~~v~~~~r---~~~l~~~~~~----------l~~l~~~~~g~iIf~~s~~~ie 334 (677)
T 3rc3_A 270 EEVHLCGEPAAID-LVMELMYTT-GEEVEVRDYKR---LTPISVLDHA----------LESLDNLRPGDCIVCFSKNDIY 334 (677)
T ss_dssp EEEEEEECGGGHH-HHHHHHHHH-TCCEEEEECCC---SSCEEECSSC----------CCSGGGCCTTEEEECSSHHHHH
T ss_pred cceEEEeccchHH-HHHHHHHhc-CCceEEEEeee---cchHHHHHHH----------HHHHHhcCCCCEEEEcCHHHHH
Confidence 6789999999953 344444433 33333322111 0011000000 1112233556799999999999
Q ss_pred HHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhc--CCcEEEEEcCccccCCCCCCcceEEecCC--------------C
Q 007814 409 DIHEYLLLKGVEAVAVHGGKDQEEREYAISSFKA--GKKDVLVATDVASKGLDFPDIQHVINYDM--------------P 472 (588)
Q Consensus 409 ~l~~~L~~~g~~~~~ihg~~~~~~R~~~~~~f~~--g~~~vLVaT~~~~~GlDip~v~~VI~~~~--------------p 472 (588)
.+++.|...++.+..+||+|++.+|..+++.|++ |+.+|||||+++++|||+ ++++||++++ |
T Consensus 335 ~la~~L~~~g~~v~~lHG~L~~~~R~~~~~~F~~~~g~~~VLVATdi~e~GlDi-~v~~VI~~~~~k~~~~~~G~~~~~p 413 (677)
T 3rc3_A 335 SVSRQIEIRGLESAVIYGSLPPGTKLAQAKKFNDPNDPCKILVATDAIGMGLNL-SIRRIIFYSLIKPSINEKGERELEP 413 (677)
T ss_dssp HHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHCTTSSCCEEEECGGGGSSCCC-CBSEEEESCSBC-----------CB
T ss_pred HHHHHHHhcCCCeeeeeccCCHHHHHHHHHHHHccCCCeEEEEeCcHHHCCcCc-CccEEEECCccccccccCCcccccc
Confidence 9999999999999999999999999999999999 899999999999999999 9999999999 7
Q ss_pred CChhHHHHHhcccccCCCc---cEEEEEe
Q 007814 473 AEIENYVHRIGRTGRCGKT---GIATTFI 498 (588)
Q Consensus 473 ~s~~~y~qriGRagR~g~~---g~~~~~~ 498 (588)
.+..+|+||+|||||.|.. |.++.+.
T Consensus 414 ~s~~~~~QR~GRAGR~g~~g~~G~v~~l~ 442 (677)
T 3rc3_A 414 ITTSQALQIAGRAGRFSSRFKEGEVTTMN 442 (677)
T ss_dssp CCHHHHHHHHTTBTCTTSSCSSEEEEESS
T ss_pred CCHHHHHHHhcCCCCCCCCCCCEEEEEEe
Confidence 8999999999999999965 5555544
No 62
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=100.00 E-value=2.2e-35 Score=282.35 Aligned_cols=203 Identities=31% Similarity=0.554 Sum_probs=185.6
Q ss_pred CCCCCCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEE
Q 007814 143 KNFKDMRFPEPILKKLKAKGIVQPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFC 222 (588)
Q Consensus 143 ~~f~~~~l~~~l~~~l~~~g~~~p~~~Q~~~i~~il~g~dvii~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~ 222 (588)
.+|+++++++.+++.|.+.||..|+|+|.++++.+++|+|+++++|||||||++|++|++..+... ..++++
T Consensus 3 ~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~apTGsGKT~~~~~~~~~~~~~~--------~~~~~~ 74 (206)
T 1vec_A 3 NEFEDYCLKRELLMGIFEMGWEKPSPIQEESIPIALSGRDILARAKNGTGKSGAYLIPLLERLDLK--------KDNIQA 74 (206)
T ss_dssp SSGGGSCCCHHHHHHHHTTTCCSCCHHHHHHHHHHHTTCCEEEECCSSSTTHHHHHHHHHHHCCTT--------SCSCCE
T ss_pred CChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHccCCCEEEECCCCCchHHHHHHHHHHHhccc--------CCCeeE
Confidence 479999999999999999999999999999999999999999999999999999999999765331 356789
Q ss_pred EEEcCCHHHHHHHHHHHHHHhhcccccCCCCceEEEEEcCcchHHHHHHHhcCCcEEEeChHHHHHHHHcccCCCCCcce
Q 007814 223 LIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMNLDNCRY 302 (588)
Q Consensus 223 Lil~Ptr~La~Q~~~~~~~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~L~~~l~~~~~~l~~~~~ 302 (588)
||++||++|+.|+++.+.++.... +++++..++|+.....+...+..+++|+|+||++|.+.+.+....+.++++
T Consensus 75 lil~Pt~~L~~q~~~~~~~~~~~~-----~~~~~~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~ 149 (206)
T 1vec_A 75 MVIVPTRELALQVSQICIQVSKHM-----GGAKVMATTGGTNLRDDIMRLDDTVHVVIATPGRILDLIKKGVAKVDHVQM 149 (206)
T ss_dssp EEECSCHHHHHHHHHHHHHHTTTS-----SSCCEEEECSSSCHHHHHHHTTSCCSEEEECHHHHHHHHHTTCSCCTTCCE
T ss_pred EEEeCcHHHHHHHHHHHHHHHhhc-----CCceEEEEeCCccHHHHHHhcCCCCCEEEeCHHHHHHHHHcCCcCcccCCE
Confidence 999999999999999999987542 367889999999888887777788999999999999999888888999999
Q ss_pred eEecCcccccccCcHHHHHHHHHhhhhcceeEEEecccchHHHHHHHHhcCCCeEE
Q 007814 303 LTLDEADRLVDLGFEDDIREVFDHFKAQRQTLLFSATMPTKIQNFARSALVKPVTV 358 (588)
Q Consensus 303 lViDEah~l~~~~~~~~i~~i~~~~~~~~q~l~~SAT~~~~i~~~~~~~l~~p~~i 358 (588)
||+||||++.+.+|...+..++..++..+|+++||||+|+.+.++++.++.+|+.+
T Consensus 150 lViDEah~~~~~~~~~~l~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~l~~p~~i 205 (206)
T 1vec_A 150 IVLDEADKLLSQDFVQIMEDIILTLPKNRQILLYSATFPLSVQKFMNSHLEKPYEI 205 (206)
T ss_dssp EEEETHHHHTSTTTHHHHHHHHHHSCTTCEEEEEESCCCHHHHHHHHHHCSSCEEE
T ss_pred EEEEChHHhHhhCcHHHHHHHHHhCCccceEEEEEeeCCHHHHHHHHHHcCCCeEe
Confidence 99999999999999999999999998899999999999999999999999999765
No 63
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=100.00 E-value=5.1e-36 Score=289.81 Aligned_cols=212 Identities=30% Similarity=0.495 Sum_probs=186.3
Q ss_pred CCCCCCCCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCC
Q 007814 141 PIKNFKDMRFPEPILKKLKAKGIVQPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGP 220 (588)
Q Consensus 141 p~~~f~~~~l~~~l~~~l~~~g~~~p~~~Q~~~i~~il~g~dvii~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~ 220 (588)
|..+|+++++++.+.++|.+.||..|+++|.++++.+++|+|+++++|||||||++|++|++..+... ..++
T Consensus 2 ~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~--------~~~~ 73 (219)
T 1q0u_A 2 AETQFTRFPFQPFIIEAIKTLRFYKPTEIQERIIPGALRGESMVGQSQTGTGKTHAYLLPIMEKIKPE--------RAEV 73 (219)
T ss_dssp --CCGGGSCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHHTCCEEEECCSSHHHHHHHHHHHHHHCCTT--------SCSC
T ss_pred CCCCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhC--------cCCc
Confidence 45689999999999999999999999999999999999999999999999999999999999875432 2467
Q ss_pred EEEEEcCCHHHHHHHHHHHHHHhhcccccCCCCceEEEEEcCcchHHHHHHHhcCCcEEEeChHHHHHHHHcccCCCCCc
Q 007814 221 FCLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMNLDNC 300 (588)
Q Consensus 221 ~~Lil~Ptr~La~Q~~~~~~~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~L~~~l~~~~~~l~~~ 300 (588)
++||++||++|+.|+++.+.++....... .++++..++||.+...+...+..+++|+|+||++|.+++......+..+
T Consensus 74 ~~lil~Pt~~L~~q~~~~~~~~~~~~~~~--~~~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~ 151 (219)
T 1q0u_A 74 QAVITAPTRELATQIYHETLKITKFCPKD--RMIVARCLIGGTDKQKALEKLNVQPHIVIGTPGRINDFIREQALDVHTA 151 (219)
T ss_dssp CEEEECSSHHHHHHHHHHHHHHHTTSCGG--GCCCEEEECCCSHHHHTTCCCSSCCSEEEECHHHHHHHHHTTCCCGGGC
T ss_pred eEEEEcCcHHHHHHHHHHHHHHhhhcccc--cceEEEEEeCCCCHHHHHHHcCCCCCEEEeCHHHHHHHHHcCCCCcCcc
Confidence 89999999999999999999987643111 1577888899987766655555678999999999999998888888999
Q ss_pred ceeEecCcccccccCcHHHHHHHHHhhhhcceeEEEecccchHHHHHHHHhcCCCeEEEecC
Q 007814 301 RYLTLDEADRLVDLGFEDDIREVFDHFKAQRQTLLFSATMPTKIQNFARSALVKPVTVNVGR 362 (588)
Q Consensus 301 ~~lViDEah~l~~~~~~~~i~~i~~~~~~~~q~l~~SAT~~~~i~~~~~~~l~~p~~i~~~~ 362 (588)
++||+||||++.+++|...+..++..++..+|+++||||+|+.+.++++.++.+|..+.+..
T Consensus 152 ~~lViDEah~~~~~~~~~~l~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~~~~p~~~~~~~ 213 (219)
T 1q0u_A 152 HILVVDEADLMLDMGFITDVDQIAARMPKDLQMLVFSATIPEKLKPFLKKYMENPTFVHVLE 213 (219)
T ss_dssp CEEEECSHHHHHHTTCHHHHHHHHHTSCTTCEEEEEESCCCGGGHHHHHHHCSSCEEEECC-
T ss_pred eEEEEcCchHHhhhChHHHHHHHHHhCCcccEEEEEecCCCHHHHHHHHHHcCCCeEEEeec
Confidence 99999999999999999999999999998999999999999999999999999998876543
No 64
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=100.00 E-value=1.7e-35 Score=287.08 Aligned_cols=212 Identities=29% Similarity=0.522 Sum_probs=182.8
Q ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCC
Q 007814 136 EDIPPPIKNFKDMRFPEPILKKLKAKGIVQPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIV 215 (588)
Q Consensus 136 ~~~p~p~~~f~~~~l~~~l~~~l~~~g~~~p~~~Q~~~i~~il~g~dvii~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~ 215 (588)
...|+++.+|+++++++.+++.|.+.||..|+|+|.++++.+++|+|+++++|||||||++|++|++..+...
T Consensus 7 ~~~~~~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~~pTGsGKT~~~~~~~l~~l~~~------- 79 (224)
T 1qde_A 7 TNYDKVVYKFDDMELDENLLRGVFGYGFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQRIDTS------- 79 (224)
T ss_dssp BSCCCCCCCGGGGTCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHCCTT-------
T ss_pred cccCcccCChhhcCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHHhcc-------
Confidence 4467788999999999999999999999999999999999999999999999999999999999999876432
Q ss_pred CCCCCEEEEEcCCHHHHHHHHHHHHHHhhcccccCCCCceEEEEEcCcchHHHHHHHhcCCcEEEeChHHHHHHHHcccC
Q 007814 216 PGEGPFCLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKM 295 (588)
Q Consensus 216 ~~~~~~~Lil~Ptr~La~Q~~~~~~~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~L~~~l~~~~~ 295 (588)
..++++||++||++|+.|+++.+.+++... ++++..++|+.....+...+.. ++|+|+||++|.+.+.+...
T Consensus 80 -~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~------~~~~~~~~g~~~~~~~~~~~~~-~~iiv~Tp~~l~~~~~~~~~ 151 (224)
T 1qde_A 80 -VKAPQALMLAPTRELALQIQKVVMALAFHM------DIKVHACIGGTSFVEDAEGLRD-AQIVVGTPGRVFDNIQRRRF 151 (224)
T ss_dssp -CCSCCEEEECSSHHHHHHHHHHHHHHTTTS------CCCEEEECC----------CTT-CSEEEECHHHHHHHHHTTSS
T ss_pred -CCCceEEEEECCHHHHHHHHHHHHHHhccc------CceEEEEeCCcchHHHHhcCCC-CCEEEECHHHHHHHHHhCCc
Confidence 356789999999999999999999987654 7889999998877666555544 89999999999999988888
Q ss_pred CCCCcceeEecCcccccccCcHHHHHHHHHhhhhcceeEEEecccchHHHHHHHHhcCCCeEEEecC
Q 007814 296 NLDNCRYLTLDEADRLVDLGFEDDIREVFDHFKAQRQTLLFSATMPTKIQNFARSALVKPVTVNVGR 362 (588)
Q Consensus 296 ~l~~~~~lViDEah~l~~~~~~~~i~~i~~~~~~~~q~l~~SAT~~~~i~~~~~~~l~~p~~i~~~~ 362 (588)
.+.++++||+||||++.+++|...+..++..++...|+++||||+++.+.++++.++.+|+.+.+..
T Consensus 152 ~~~~~~~iViDEah~~~~~~~~~~l~~i~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~p~~i~~~~ 218 (224)
T 1qde_A 152 RTDKIKMFILDEADEMLSSGFKEQIYQIFTLLPPTTQVVLLSATMPNDVLEVTTKFMRNPVRILVKK 218 (224)
T ss_dssp CCTTCCEEEEETHHHHHHTTCHHHHHHHHHHSCTTCEEEEEESSCCHHHHHHHHHHCSSCEEEC---
T ss_pred chhhCcEEEEcChhHHhhhhhHHHHHHHHHhCCccCeEEEEEeecCHHHHHHHHHHCCCCEEEEecC
Confidence 8999999999999999999999999999999999999999999999999999999999998876654
No 65
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=100.00 E-value=6.6e-35 Score=279.16 Aligned_cols=204 Identities=38% Similarity=0.631 Sum_probs=186.0
Q ss_pred CCCCCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEEE
Q 007814 144 NFKDMRFPEPILKKLKAKGIVQPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFCL 223 (588)
Q Consensus 144 ~f~~~~l~~~l~~~l~~~g~~~p~~~Q~~~i~~il~g~dvii~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~L 223 (588)
+|+++++++.+.+.|.+.||..|+|+|.++++.+++|+|+++++|||||||++|++|++..+.... ....++++|
T Consensus 2 ~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~li~~~TGsGKT~~~~~~~~~~l~~~~-----~~~~~~~~l 76 (207)
T 2gxq_A 2 EFKDFPLKPEILEALHGRGLTTPTPIQAAALPLALEGKDLIGQARTGTGKTLAFALPIAERLAPSQ-----ERGRKPRAL 76 (207)
T ss_dssp CGGGSCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHCCCCC-----CTTCCCSEE
T ss_pred ChhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHcCCCCEEEECCCCChHHHHHHHHHHHHHhhcc-----ccCCCCcEE
Confidence 689999999999999999999999999999999999999999999999999999999998764311 123578899
Q ss_pred EEcCCHHHHHHHHHHHHHHhhcccccCCCCceEEEEEcCcchHHHHHHHhcCCcEEEeChHHHHHHHHcccCCCCCccee
Q 007814 224 IVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMNLDNCRYL 303 (588)
Q Consensus 224 il~Ptr~La~Q~~~~~~~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~L~~~l~~~~~~l~~~~~l 303 (588)
|++||++|+.|+++.+.+++. .+++..++|+.....+...+..+++|+|+||+++.+++......+..+++|
T Consensus 77 il~P~~~L~~q~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~i 148 (207)
T 2gxq_A 77 VLTPTRELALQVASELTAVAP--------HLKVVAVYGGTGYGKQKEALLRGADAVVATPGRALDYLRQGVLDLSRVEVA 148 (207)
T ss_dssp EECSSHHHHHHHHHHHHHHCT--------TSCEEEECSSSCSHHHHHHHHHCCSEEEECHHHHHHHHHHTSSCCTTCSEE
T ss_pred EEECCHHHHHHHHHHHHHHhh--------cceEEEEECCCChHHHHHHhhCCCCEEEECHHHHHHHHHcCCcchhhceEE
Confidence 999999999999999999864 477888999988888878888889999999999999998888889999999
Q ss_pred EecCcccccccCcHHHHHHHHHhhhhcceeEEEecccchHHHHHHHHhcCCCeEEEe
Q 007814 304 TLDEADRLVDLGFEDDIREVFDHFKAQRQTLLFSATMPTKIQNFARSALVKPVTVNV 360 (588)
Q Consensus 304 ViDEah~l~~~~~~~~i~~i~~~~~~~~q~l~~SAT~~~~i~~~~~~~l~~p~~i~~ 360 (588)
|+||||++.+++|...+..++..++..+|+++||||+++.+.++++.++.+|..+.+
T Consensus 149 ViDEah~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~p~~i~~ 205 (207)
T 2gxq_A 149 VLDEADEMLSMGFEEEVEALLSATPPSRQTLLFSATLPSWAKRLAERYMKNPVLINV 205 (207)
T ss_dssp EEESHHHHHHTTCHHHHHHHHHTSCTTSEEEEECSSCCHHHHHHHHHHCSSCEEEEC
T ss_pred EEEChhHhhccchHHHHHHHHHhCCccCeEEEEEEecCHHHHHHHHHHcCCCeEEEc
Confidence 999999999999999999999999989999999999999999999999999988765
No 66
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=100.00 E-value=7.3e-35 Score=289.45 Aligned_cols=204 Identities=36% Similarity=0.602 Sum_probs=180.7
Q ss_pred CCCCCCC--CCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCC
Q 007814 143 KNFKDMR--FPEPILKKLKAKGIVQPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGP 220 (588)
Q Consensus 143 ~~f~~~~--l~~~l~~~l~~~g~~~p~~~Q~~~i~~il~g~dvii~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~ 220 (588)
.+|.+++ +++.+++.|.+.||..|+|+|.++++.++.|+|++++||||||||++|++|++..+.... .....++
T Consensus 52 ~~f~~l~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~l~~l~~l~~~~----~~~~~~~ 127 (262)
T 3ly5_A 52 TSFASLCNLVNENTLKAIKEMGFTNMTEIQHKSIRPLLEGRDLLAAAKTGSGKTLAFLIPAVELIVKLR----FMPRNGT 127 (262)
T ss_dssp GCC-----CCCHHHHHHHHHTTCCBCCHHHHHHHHHHHHTCCCEECCCTTSCHHHHHHHHHHHHHHHTT----CCGGGCC
T ss_pred CChhHhccccCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCcEEEEccCCCCchHHHHHHHHHHHHhcc----ccccCCc
Confidence 3566666 999999999999999999999999999999999999999999999999999998876532 1123577
Q ss_pred EEEEEcCCHHHHHHHHHHHHHHhhcccccCCCCceEEEEEcCcchHHHHHHHhcCCcEEEeChHHHHHHHHcc-cCCCCC
Q 007814 221 FCLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKK-KMNLDN 299 (588)
Q Consensus 221 ~~Lil~Ptr~La~Q~~~~~~~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~L~~~l~~~-~~~l~~ 299 (588)
++|||+||++||.|+++.+.+++... ++.+..++|+.....+...+..+++|+|+||++|.+++... ...+.+
T Consensus 128 ~~lil~Pt~~La~q~~~~~~~~~~~~------~~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~~~~~~~~~~~~ 201 (262)
T 3ly5_A 128 GVLILSPTRELAMQTFGVLKELMTHH------VHTYGLIMGGSNRSAEAQKLGNGINIIVATPGRLLDHMQNTPGFMYKN 201 (262)
T ss_dssp CEEEECSSHHHHHHHHHHHHHHTTTC------CSCEEEECSSSCHHHHHHHHHHCCSEEEECHHHHHHHHHHCTTCCCTT
T ss_pred eEEEEeCCHHHHHHHHHHHHHHHhhc------CceEEEEECCCCHHHHHHHhcCCCCEEEEcHHHHHHHHHccCCccccc
Confidence 89999999999999999999998654 78889999999988888888888999999999999888765 467889
Q ss_pred cceeEecCcccccccCcHHHHHHHHHhhhhcceeEEEecccchHHHHHHHHhcCCCe
Q 007814 300 CRYLTLDEADRLVDLGFEDDIREVFDHFKAQRQTLLFSATMPTKIQNFARSALVKPV 356 (588)
Q Consensus 300 ~~~lViDEah~l~~~~~~~~i~~i~~~~~~~~q~l~~SAT~~~~i~~~~~~~l~~p~ 356 (588)
+++||+||||++.+++|...+..++..++..+|+++||||+|+.+.++++.++.++.
T Consensus 202 l~~lViDEah~l~~~~~~~~l~~i~~~~~~~~q~l~~SAT~~~~v~~~~~~~l~~~~ 258 (262)
T 3ly5_A 202 LQCLVIDEADRILDVGFEEELKQIIKLLPTRRQTMLFSATQTRKVEDLARISLKKEP 258 (262)
T ss_dssp CCEEEECSHHHHHHTTCHHHHHHHHHHSCSSSEEEEECSSCCHHHHHHHHHHCSSCC
T ss_pred CCEEEEcChHHHhhhhHHHHHHHHHHhCCCCCeEEEEEecCCHHHHHHHHHHcCCCC
Confidence 999999999999999999999999999999999999999999999999999887654
No 67
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12}
Probab=100.00 E-value=3.4e-35 Score=340.44 Aligned_cols=317 Identities=19% Similarity=0.232 Sum_probs=220.3
Q ss_pred CCCcHHHHHHHHHHhc--CCCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEEEEEcCCHHHHHHHHHHHHH
Q 007814 164 VQPTPIQVQGLPVVLS--GRDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFCLIVCPSRELARQTYEVVEQ 241 (588)
Q Consensus 164 ~~p~~~Q~~~i~~il~--g~dvii~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Q~~~~~~~ 241 (588)
..|+|+|.+++..++. +.++|++++||+|||++++..+...+.. +...++|||||+ .|+.||.+.+.+
T Consensus 152 ~~LrpyQ~eav~~~l~~~~~~~LLad~tGlGKTi~Ai~~i~~l~~~---------g~~~rvLIVvP~-sLl~Qw~~E~~~ 221 (968)
T 3dmq_A 152 TSLIPHQLNIAHDVGRRHAPRVLLADEVGLGKTIEAGMILHQQLLS---------GAAERVLIIVPE-TLQHQWLVEMLR 221 (968)
T ss_dssp SCCCHHHHHHHHHHHHSSSCEEEECCCTTSCHHHHHHHHHHHHHHT---------SSCCCEEEECCT-TTHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHHHh---------CCCCeEEEEeCH-HHHHHHHHHHHH
Confidence 4799999999999885 4589999999999999987776655432 234579999999 999999999977
Q ss_pred HhhcccccCCCCceEEEEEcCcchHHHHH--HHhcCCcEEEeChHHHHHHHHc-ccCCCCCcceeEecCcccccccCcH-
Q 007814 242 FLTPMRDAGYPDLRTLLCIGGVDMRSQLE--VVKRGVHIVVATPGRLKDMLAK-KKMNLDNCRYLTLDEADRLVDLGFE- 317 (588)
Q Consensus 242 ~~~~~~~~~~~~i~~~~~~gg~~~~~~~~--~l~~~~~IvV~Tp~~L~~~l~~-~~~~l~~~~~lViDEah~l~~~~~~- 317 (588)
.+ ++++..+.|+........ ......+|+|+|++.+...... ..+....+++|||||||++.+.+..
T Consensus 222 ~f---------~l~v~v~~~~~~~~~~~~~~~~~~~~dIvI~T~~~L~~~~~~~~~l~~~~~dlVIvDEAH~~kn~~~~~ 292 (968)
T 3dmq_A 222 RF---------NLRFALFDDERYAEAQHDAYNPFDTEQLVICSLDFARRSKQRLEHLCEAEWDLLVVDEAHHLVWSEDAP 292 (968)
T ss_dssp HS---------CCCCEECCHHHHHHHHHTTCSSSTTCSEEEECHHHHHTSTTTTHHHHTSCCCEEEECCSSCCCCBTTBC
T ss_pred Hh---------CCCEEEEccchhhhhhhhcccccccCCEEEEcHHHHhhCHHHHHHhhhcCCCEEEehhhHhhcCCCCcc
Confidence 65 455555554322111100 0112468999999877432111 1233457899999999999865422
Q ss_pred HHHHHHHHhh-hhcceeEEEecccch----HHHHHH----------------------------HHhcCC----------
Q 007814 318 DDIREVFDHF-KAQRQTLLFSATMPT----KIQNFA----------------------------RSALVK---------- 354 (588)
Q Consensus 318 ~~i~~i~~~~-~~~~q~l~~SAT~~~----~i~~~~----------------------------~~~l~~---------- 354 (588)
......+..+ ....+++++|||+.. .+..++ ...+..
T Consensus 293 s~~~~~l~~L~~~~~~~L~LTATPi~n~~~el~sll~~L~p~~~~~~~~f~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~ 372 (968)
T 3dmq_A 293 SREYQAIEQLAEHVPGVLLLTATPEQLGMESHFARLRLLDPNRFHDFAQFVEEQKNYCPVADAVAMLLAGNKLSNDELNM 372 (968)
T ss_dssp CHHHHHHHHHHTTCSSEEESCSSCSSSCSSCTHHHHHHHCTTTCSSTHHHHHHHHHHHHHHHHHHTTTTSCCCCGGGTTS
T ss_pred hHHHHHHHHHhhcCCcEEEEEcCCccCCHHHHHHHHHhcCccccCCHHHHHHHHHhHHHHHHHHHHHhccCCCCHHHHHH
Confidence 1112223333 245569999999842 000100 000000
Q ss_pred ------------------------------------------CeEEEecCCCCccc---ceEE-E---------------
Q 007814 355 ------------------------------------------PVTVNVGRAGAANL---DVIQ-E--------------- 373 (588)
Q Consensus 355 ------------------------------------------p~~i~~~~~~~~~~---~~~~-~--------------- 373 (588)
.+.+...+...... .... .
T Consensus 373 L~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~i~~lld~~g~~~~l~r~~r~~i~~~p~r~~~~~~l~~~~~~~~~~~~~~ 452 (968)
T 3dmq_A 373 LGEMIGEQDIEPLLQAANSDSEDAQSARQELVSMLMDRHGTSRVLFRNTRNGVKGFPKRELHTIKLPLPTQYQTAIKVSG 452 (968)
T ss_dssp STTTTCTTCSSTTGGGTCCCSSCSTTTHHHHHHHHGGGCTTTTTEECCCTTTCCCCCCCCCCEEEECCCHHHHHHHHHHH
T ss_pred HHHHhcchhhHHHHhcccchhhhhHHHHHHHHHHHHHhhCcchhhhhhhhhhhcccChhheEeeecCCCHHHHHHHHHHh
Confidence 00000000000000 0000 0
Q ss_pred -----------------------------eeehhhHHHHHHHHHHhhc-CCCCEEEEeCccccHHHHHHHHHH-cCCcEE
Q 007814 374 -----------------------------VEYVKQEAKIVYLLECLQK-TPPPVLIFCENKADVDDIHEYLLL-KGVEAV 422 (588)
Q Consensus 374 -----------------------------~~~~~~~~k~~~ll~~l~~-~~~~viIF~~s~~~~~~l~~~L~~-~g~~~~ 422 (588)
..+.....|...+...+.. .+.++||||+++..++.++..|.. .|+.+.
T Consensus 453 ~~~~~~~~~~~~~~~l~pe~~~~~l~~~~~~~~~~~~K~~~L~~ll~~~~~~k~iVF~~~~~~~~~l~~~L~~~~g~~~~ 532 (968)
T 3dmq_A 453 IMGARKSAEDRARDMLYPERIYQEFEGDNATWWNFDPRVEWLMGYLTSHRSQKVLVICAKAATALQLEQVLREREGIRAA 532 (968)
T ss_dssp HTTCCSSGGGGTHHHHCSGGGTTTTTSSSCCTTTTSHHHHHHHHHHHHTSSSCCCEECSSTHHHHHHHHHHHTTTCCCEE
T ss_pred hhhhhhhhHHHHhhhcChHHHHHHhhhhhhcccCccHHHHHHHHHHHhCCCCCEEEEeCcHHHHHHHHHHHHHHcCCcEE
Confidence 0122334566677777665 467999999999999999999995 599999
Q ss_pred EEeCCCCHHHHHHHHHHHhcCC--cEEEEEcCccccCCCCCCcceEEecCCCCChhHHHHHhcccccCCCccEEEEEec
Q 007814 423 AVHGGKDQEEREYAISSFKAGK--KDVLVATDVASKGLDFPDIQHVINYDMPAEIENYVHRIGRTGRCGKTGIATTFIN 499 (588)
Q Consensus 423 ~ihg~~~~~~R~~~~~~f~~g~--~~vLVaT~~~~~GlDip~v~~VI~~~~p~s~~~y~qriGRagR~g~~g~~~~~~~ 499 (588)
.+||+|++.+|..+++.|++|+ ++|||||+++++|+|+|++++||+||+|+++..|+||+||+||.|+.|.++++..
T Consensus 533 ~lhG~~~~~~R~~~l~~F~~g~~~~~vLvaT~v~~~GlDl~~~~~VI~~d~p~~~~~~~Q~~GR~~R~Gq~~~v~v~~~ 611 (968)
T 3dmq_A 533 VFHEGMSIIERDRAAAWFAEEDTGAQVLLCSEIGSEGRNFQFASHMVMFDLPFNPDLLEQRIGRLDRIGQAHDIQIHVP 611 (968)
T ss_dssp EECTTSCTTHHHHHHHHHHSTTSSCEEEECSCCTTCSSCCTTCCEEECSSCCSSHHHHHHHHHTTSCSSSCSCCEEEEE
T ss_pred EEeCCCCHHHHHHHHHHHhCCCCcccEEEecchhhcCCCcccCcEEEEecCCCCHHHHHHHhhccccCCCCceEEEEEe
Confidence 9999999999999999999998 9999999999999999999999999999999999999999999999996666643
No 68
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=100.00 E-value=1.3e-34 Score=279.98 Aligned_cols=209 Identities=29% Similarity=0.518 Sum_probs=182.8
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCC
Q 007814 138 IPPPIKNFKDMRFPEPILKKLKAKGIVQPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPG 217 (588)
Q Consensus 138 ~p~p~~~f~~~~l~~~l~~~l~~~g~~~p~~~Q~~~i~~il~g~dvii~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~ 217 (588)
.+....+|+++++++.+.+.|.+.||..|+|+|.++++.+++|+|+++++|||+|||++|++|++..+.. ..
T Consensus 9 ~~~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~li~~~TGsGKT~~~~~~~~~~~~~--------~~ 80 (220)
T 1t6n_A 9 VSIHSSGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEP--------VT 80 (220)
T ss_dssp -----CCSTTSCCCHHHHHHHHHTTCCCCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHCCC--------CT
T ss_pred ccccCCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCchhhhhhHHHHHhhhc--------cC
Confidence 3445567999999999999999999999999999999999999999999999999999999999976532 12
Q ss_pred CCCEEEEEcCCHHHHHHHHHHHHHHhhcccccCCCCceEEEEEcCcchHHHHHHHhc-CCcEEEeChHHHHHHHHcccCC
Q 007814 218 EGPFCLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVKR-GVHIVVATPGRLKDMLAKKKMN 296 (588)
Q Consensus 218 ~~~~~Lil~Ptr~La~Q~~~~~~~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~~-~~~IvV~Tp~~L~~~l~~~~~~ 296 (588)
.++++||++||++|+.|+++.+.++.... +++++..++|+.+...+...+.. .++|+|+||++|.+++......
T Consensus 81 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~-----~~~~v~~~~g~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~ 155 (220)
T 1t6n_A 81 GQVSVLVMCHTRELAFQISKEYERFSKYM-----PNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNKSLN 155 (220)
T ss_dssp TCCCEEEECSCHHHHHHHHHHHHHHTTTS-----TTCCEEEESCCSCHHHHHHHHHHSCCSEEEECHHHHHHHHHTTSSC
T ss_pred CCEEEEEEeCCHHHHHHHHHHHHHHHhhC-----CCceEEEEeCCCChHHHHHHHhcCCCCEEEeCHHHHHHHHHhCCCC
Confidence 45689999999999999999999986542 47889999999888777776655 4799999999999999888888
Q ss_pred CCCcceeEecCcccccc-cCcHHHHHHHHHhhhhcceeEEEecccchHHHHHHHHhcCCCeEEE
Q 007814 297 LDNCRYLTLDEADRLVD-LGFEDDIREVFDHFKAQRQTLLFSATMPTKIQNFARSALVKPVTVN 359 (588)
Q Consensus 297 l~~~~~lViDEah~l~~-~~~~~~i~~i~~~~~~~~q~l~~SAT~~~~i~~~~~~~l~~p~~i~ 359 (588)
+..+++||+||||++.+ .+|...+..++..++..+|+++||||+++.+.++++.++.+|+.+.
T Consensus 156 ~~~~~~lViDEah~~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~p~~i~ 219 (220)
T 1t6n_A 156 LKHIKHFILDECDKMLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCRKFMQDPMEIF 219 (220)
T ss_dssp CTTCCEEEEESHHHHHSSHHHHHHHHHHHHTSCSSSEEEEEESCCCTTTHHHHHTTCSSCEEEE
T ss_pred cccCCEEEEcCHHHHhcccCcHHHHHHHHHhCCCcCeEEEEEeecCHHHHHHHHHHcCCCeEEe
Confidence 99999999999999987 5788899999999888999999999999999999999999998764
No 69
>1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A
Probab=100.00 E-value=1.5e-34 Score=314.46 Aligned_cols=308 Identities=18% Similarity=0.232 Sum_probs=215.2
Q ss_pred CCCcHHHHHHHHHHh----cCCCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEEEEEcCCHHHHHHHHHHH
Q 007814 164 VQPTPIQVQGLPVVL----SGRDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFCLIVCPSRELARQTYEVV 239 (588)
Q Consensus 164 ~~p~~~Q~~~i~~il----~g~dvii~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Q~~~~~ 239 (588)
..|+|+|.++++.+. .++++|+.++||+|||++++..+ ..+... +...++|||||+ .|+.||.+++
T Consensus 36 ~~L~~~Q~~~v~~l~~~~~~~~~~ilad~~GlGKT~~ai~~i-~~~~~~--------~~~~~~LIv~P~-~l~~qw~~e~ 105 (500)
T 1z63_A 36 ANLRPYQIKGFSWMRFMNKLGFGICLADDMGLGKTLQTIAVF-SDAKKE--------NELTPSLVICPL-SVLKNWEEEL 105 (500)
T ss_dssp SCCCHHHHHHHHHHHHHHHTTCCEEECCCTTSCHHHHHHHHH-HHHHHT--------TCCSSEEEEECS-TTHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHhhCCCCEEEEeCCCCcHHHHHHHHH-HHHHhc--------CCCCCEEEEccH-HHHHHHHHHH
Confidence 479999999998774 67899999999999999875544 333331 235679999995 6899999999
Q ss_pred HHHhhcccccCCCCceEEEEEcCcchHHHHHHHhcCCcEEEeChHHHHHHHHcccCCCCCcceeEecCcccccccCcHHH
Q 007814 240 EQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMNLDNCRYLTLDEADRLVDLGFEDD 319 (588)
Q Consensus 240 ~~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~L~~~l~~~~~~l~~~~~lViDEah~l~~~~~~~~ 319 (588)
.+++. ++++..++|+... ......+|+|+||+.+..... +....+++||+||||++.+.+ ..
T Consensus 106 ~~~~~--------~~~v~~~~g~~~~-----~~~~~~~ivi~t~~~l~~~~~---l~~~~~~~vIvDEaH~~kn~~--~~ 167 (500)
T 1z63_A 106 SKFAP--------HLRFAVFHEDRSK-----IKLEDYDIILTTYAVLLRDTR---LKEVEWKYIVIDEAQNIKNPQ--TK 167 (500)
T ss_dssp HHHCT--------TSCEEECSSSTTS-----CCGGGSSEEEEEHHHHTTCHH---HHTCCEEEEEEETGGGGSCTT--SH
T ss_pred HHHCC--------CceEEEEecCchh-----ccccCCcEEEeeHHHHhccch---hcCCCcCEEEEeCccccCCHh--HH
Confidence 99853 5677777766422 112347999999998864432 334568899999999998765 34
Q ss_pred HHHHHHhhhhcceeEEEecccchH-HHHH------------------------------------HHHhcCCCeEEEecC
Q 007814 320 IREVFDHFKAQRQTLLFSATMPTK-IQNF------------------------------------ARSALVKPVTVNVGR 362 (588)
Q Consensus 320 i~~i~~~~~~~~q~l~~SAT~~~~-i~~~------------------------------------~~~~l~~p~~i~~~~ 362 (588)
....+..++ ..+.+++|||+..+ ..++ +... ..|+.+....
T Consensus 168 ~~~~l~~l~-~~~~l~LTaTP~~n~~~el~~ll~~l~p~~~~~~~~f~~~~~~~~~~~~~~~~~~l~~~-l~~~~lrr~k 245 (500)
T 1z63_A 168 IFKAVKELK-SKYRIALTGTPIENKVDDLWSIMTFLNPGLLGSYSEFKSKFATPIKKGDNMAKEELKAI-ISPFILRRTK 245 (500)
T ss_dssp HHHHHHTSC-EEEEEEECSSCSTTCHHHHHHHHHHHSTTTTCCHHHHHTTTHHHHHTTCHHHHHHHHHH-HTTTEECCCT
T ss_pred HHHHHHhhc-cCcEEEEecCCCCCCHHHHHHHHHHhCCCcCCCHHHHHHHhccccccccHHHHHHHHHH-HhhHeeeecc
Confidence 455555564 35679999998432 1111 1111 1222222111
Q ss_pred CC----CcccceEEEeeeh---------------------------------------------------------hhHH
Q 007814 363 AG----AANLDVIQEVEYV---------------------------------------------------------KQEA 381 (588)
Q Consensus 363 ~~----~~~~~~~~~~~~~---------------------------------------------------------~~~~ 381 (588)
.. ...+.......++ ....
T Consensus 246 ~~~~~~~~lp~~~~~~v~~~l~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lr~~~~~p~l~~~~~~~~~~s~ 325 (500)
T 1z63_A 246 YDKAIINDLPDKIETNVYCNLTPEQAAMYKAEVENLFNNIDSVTGIKRKGMILSTLLKLKQIVDHPALLKGGEQSVRRSG 325 (500)
T ss_dssp TCHHHHTTSCSEEEEEEEECCCHHHHHHHHHHHHHHTTTTTTCCTHHHHHHHHHHHHHHHHHTTCTHHHHCSCCCSTTCH
T ss_pred cccchhhcCCCCeEEEEEcCCCHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhCCHHHhcCccchhhcch
Confidence 00 0001111111000 0112
Q ss_pred HHHHHHHHh---hcCCCCEEEEeCccccHHHHHHHHHHc-CCcEEEEeCCCCHHHHHHHHHHHhcC-CcE-EEEEcCccc
Q 007814 382 KIVYLLECL---QKTPPPVLIFCENKADVDDIHEYLLLK-GVEAVAVHGGKDQEEREYAISSFKAG-KKD-VLVATDVAS 455 (588)
Q Consensus 382 k~~~ll~~l---~~~~~~viIF~~s~~~~~~l~~~L~~~-g~~~~~ihg~~~~~~R~~~~~~f~~g-~~~-vLVaT~~~~ 455 (588)
|+..+.+.+ ...+.++||||++...++.+.+.|... |+.+..+||++++.+|..+++.|++| ... +|++|++++
T Consensus 326 K~~~l~~~l~~~~~~~~k~lvF~~~~~~~~~l~~~l~~~~~~~~~~~~g~~~~~~R~~~~~~F~~~~~~~vil~st~~~~ 405 (500)
T 1z63_A 326 KMIRTMEIIEEALDEGDKIAIFTQFVDMGKIIRNIIEKELNTEVPFLYGELSKKERDDIISKFQNNPSVKFIVLSVKAGG 405 (500)
T ss_dssp HHHHHHHHHHHHHTTTCCEEEECSCHHHHHHHHHHHHHHHTCCCCEEETTSCHHHHHHHHHHHHHCTTCCCCEEECCCC-
T ss_pred hHHHHHHHHHHHHccCCcEEEEEehHHHHHHHHHHHHHhhCCCeEEEECCCCHHHHHHHHHHhcCCCCCCEEEEeccccc
Confidence 333333333 345779999999999999999999885 99999999999999999999999998 455 799999999
Q ss_pred cCCCCCCcceEEecCCCCChhHHHHHhcccccCCCccEE--EEEecCC
Q 007814 456 KGLDFPDIQHVINYDMPAEIENYVHRIGRTGRCGKTGIA--TTFINKN 501 (588)
Q Consensus 456 ~GlDip~v~~VI~~~~p~s~~~y~qriGRagR~g~~g~~--~~~~~~~ 501 (588)
+|+|+|++++||+||+|+|+..|.||+||++|.|+++.+ +.|+..+
T Consensus 406 ~Glnl~~~~~vi~~d~~~~~~~~~Q~~gR~~R~Gq~~~v~v~~lv~~~ 453 (500)
T 1z63_A 406 FGINLTSANRVIHFDRWWNPAVEDQATDRVYRIGQTRNVIVHKLISVG 453 (500)
T ss_dssp CCCCCTTCSEEEESSCCSCC---CHHHHTTTTTTTTSCEEEEEEEETT
T ss_pred CCCchhhCCEEEEeCCCCCcchHHHHHHHHHHcCCCCeeEEEEEEeCC
Confidence 999999999999999999999999999999999988765 4455554
No 70
>3jux_A Protein translocase subunit SECA; protein translocation, ATPase, conformational change, peptide binding, ATP-binding, cell inner membrane; HET: ADP; 3.10A {Thermotoga maritima} PDB: 3din_A*
Probab=100.00 E-value=5.2e-33 Score=299.23 Aligned_cols=314 Identities=21% Similarity=0.244 Sum_probs=235.9
Q ss_pred CCCCCcHHHHHHHHHHhcCCCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEEEEEcCCHHHHHHHHHHHHH
Q 007814 162 GIVQPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFCLIVCPSRELARQTYEVVEQ 241 (588)
Q Consensus 162 g~~~p~~~Q~~~i~~il~g~dvii~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Q~~~~~~~ 241 (588)
|+ .|+++|..+.-.+..|+ |..+.||+|||+++.+|++..++. |..+.||+||+.||.|-++.+..
T Consensus 73 g~-r~~dvQligg~~L~~G~--iaEM~TGEGKTLva~lp~~lnAL~-----------G~~vhVvT~ndyLA~rdae~m~~ 138 (822)
T 3jux_A 73 GM-RPFDVQVMGGIALHEGK--VAEMKTGEGKTLAATMPIYLNALI-----------GKGVHLVTVNDYLARRDALWMGP 138 (822)
T ss_dssp SC-CCCHHHHHHHHHHHTTC--EEECCTTSCHHHHTHHHHHHHHTT-----------SSCEEEEESSHHHHHHHHHHHHH
T ss_pred CC-CCcHHHHHHHHHHhCCC--hhhccCCCCccHHHHHHHHHHHhc-----------CCceEEEeccHHHHHhHHHHHHH
Confidence 54 69999999999998888 899999999999999999866543 66799999999999999999999
Q ss_pred HhhcccccCCCCceEEEEEcC--------------------------------------------------cchHHHHHH
Q 007814 242 FLTPMRDAGYPDLRTLLCIGG--------------------------------------------------VDMRSQLEV 271 (588)
Q Consensus 242 ~~~~~~~~~~~~i~~~~~~gg--------------------------------------------------~~~~~~~~~ 271 (588)
+...+ ++.+++++.. .+..+....
T Consensus 139 l~~~L------glsvg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~err~a 212 (822)
T 3jux_A 139 VYLFL------GLRVGVINSLGKSYEVVWKNPDLARKAIEENWSVWPDGFNGEVLKEESMNKEAVEAFQVELKEITRKEA 212 (822)
T ss_dssp HHHHT------TCCEEEEETTTEEEEEEESSHHHHHHHHHTTCCSSCTTCCSSSCCGGGSCHHHHTTTCEECCBCCHHHH
T ss_pred HHHHh------CCEEEEEcCCCcccccccccchhhhhhhcccccccccccccccccccccccccchhccccCCHHHHHHH
Confidence 98887 9999998872 122222222
Q ss_pred HhcCCcEEEeChHHH-HHHHHcc------cCCCCCcceeEecCccccc-ccC----------------------------
Q 007814 272 VKRGVHIVVATPGRL-KDMLAKK------KMNLDNCRYLTLDEADRLV-DLG---------------------------- 315 (588)
Q Consensus 272 l~~~~~IvV~Tp~~L-~~~l~~~------~~~l~~~~~lViDEah~l~-~~~---------------------------- 315 (588)
. .|||+++|..-| .|.|..+ ......+.|.||||+|.++ |..
T Consensus 213 Y--~~DItYgTn~EfgFDYLRDnm~~~~~~~vqR~~~~aIVDEvDSiLIDeArtPLiISg~~~~~~~~y~~~~~~v~~l~ 290 (822)
T 3jux_A 213 Y--LCDVTYGTNNEFGFDYLRDNLVLDYNDKVQRGHFYAIVDEADSVLIDEARTPLIISGPSKESPSVYRRFAQIAKKFV 290 (822)
T ss_dssp H--HSSEEEEEHHHHHHHHHHHTSCSSTTSCCCCCCCEEEEETHHHHHTTGGGSCEEEECCCCSCHHHHHHHHHHTTSSC
T ss_pred h--cCCCEEccCcchhhHhHHhhccCCHHHhccCCCCeEEEecccceeecCCCCCceeeCCCCCccHHHHHHHHHHHhcC
Confidence 2 379999999877 3555432 2335678899999999865 100
Q ss_pred ----cH---------------HHHHH------------------HHHhhhh-----------------------------
Q 007814 316 ----FE---------------DDIRE------------------VFDHFKA----------------------------- 329 (588)
Q Consensus 316 ----~~---------------~~i~~------------------i~~~~~~----------------------------- 329 (588)
|. ..++. +...+..
T Consensus 291 ~~~dy~vdek~~~v~lTe~G~~~~E~~l~i~nly~~~n~~l~~~i~~AL~A~~l~~~d~dYiV~dg~V~iVDe~TGR~m~ 370 (822)
T 3jux_A 291 KDKDFTVDEKARTIILTEEGVAKAEKIIGVENLYDPGNVSLLYHLINALKALHLFKKDVDYVVMNGEVIIVDEFTGRLLP 370 (822)
T ss_dssp BTTTEEECCSSSCEEECHHHHHHHHHHHTCSCTTSGGGHHHHHHHHHHHHHHHHSTTTSSEEEETTEEEECSSSSCSCCC
T ss_pred cCCcEEEEcccCeEEECHHHHHHHHHHhCCccccchhhhHHHHHHHHHHHHHHHHcCCCcEEEECCEEEEEECCCCcCCC
Confidence 00 00111 1111100
Q ss_pred --------------------------------------cceeEEEecccchHHHHHHHHhcCCCeEEEecCCCCcccceE
Q 007814 330 --------------------------------------QRQTLLFSATMPTKIQNFARSALVKPVTVNVGRAGAANLDVI 371 (588)
Q Consensus 330 --------------------------------------~~q~l~~SAT~~~~i~~~~~~~l~~p~~i~~~~~~~~~~~~~ 371 (588)
-.++.+||+|.......|...+-.. ++.+... .......
T Consensus 371 grr~s~GLHQaiEaKEgv~i~~e~~tla~IT~Qn~Fr~Y~kL~GMTGTa~te~~Ef~~iY~l~--vv~IPtn-kp~~R~d 447 (822)
T 3jux_A 371 GRRYSGGLHQAIEAKEGVPIKEESITYATITFQNYFRMYEKLAGMTGTAKTEESEFVQVYGME--VVVIPTH-KPMIRKD 447 (822)
T ss_dssp SCCCGGGHHHHHHHHHSSCCCCCCCEEEEECHHHHHTTSSEEEEEESSCGGGHHHHHHHSCCC--EEECCCS-SCCCCEE
T ss_pred CCcCchHHHHHHHHHcCCCCCCCcchhHHHHHHHHHHHhhHHeEECCCCchHHHHHHHHhCCe--EEEECCC-CCcceee
Confidence 0257899999998877777666433 3333221 1112222
Q ss_pred -EEeeehhhHHHHHHHHHHhhc---CCCCEEEEeCccccHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhcCCcEE
Q 007814 372 -QEVEYVKQEAKIVYLLECLQK---TPPPVLIFCENKADVDDIHEYLLLKGVEAVAVHGGKDQEEREYAISSFKAGKKDV 447 (588)
Q Consensus 372 -~~~~~~~~~~k~~~ll~~l~~---~~~~viIF~~s~~~~~~l~~~L~~~g~~~~~ihg~~~~~~R~~~~~~f~~g~~~v 447 (588)
+...+.....|+..++..+.. .+.|+||||+|+..++.++..|...|+++.++||+..+.++..+...|+.| .|
T Consensus 448 ~~d~vy~t~~eK~~al~~~I~~~~~~gqpVLVFt~S~e~sE~Ls~~L~~~Gi~~~vLhgkq~~rE~~ii~~ag~~g--~V 525 (822)
T 3jux_A 448 HDDLVFRTQKEKYEKIVEEIEKRYKKGQPVLVGTTSIEKSELLSSMLKKKGIPHQVLNAKYHEKEAEIVAKAGQKG--MV 525 (822)
T ss_dssp CCCEEESSHHHHHHHHHHHHHHHHHHTCCEEEEESSHHHHHHHHHHHHTTTCCCEEECSCHHHHHHHHHHHHHSTT--CE
T ss_pred cCcEEEecHHHHHHHHHHHHHHHhhCCCCEEEEECCHHHHHHHHHHHHHCCCCEEEeeCCchHHHHHHHHhCCCCC--eE
Confidence 234566777888888877754 578999999999999999999999999999999996655555555666655 69
Q ss_pred EEEcCccccCCCCC--------CcceEEecCCCCChhHHHHHhcccccCCCccEEEEEecCCC
Q 007814 448 LVATDVASKGLDFP--------DIQHVINYDMPAEIENYVHRIGRTGRCGKTGIATTFINKNQ 502 (588)
Q Consensus 448 LVaT~~~~~GlDip--------~v~~VI~~~~p~s~~~y~qriGRagR~g~~g~~~~~~~~~~ 502 (588)
+|||++++||+||+ +..+||++++|.|...|+||+|||||.|.+|.+++|++.++
T Consensus 526 tVATdmAgRGtDI~lg~~V~~~GglhVInte~Pes~r~y~qriGRTGRqG~~G~a~~fvsleD 588 (822)
T 3jux_A 526 TIATNMAGRGTDIKLGPGVAELGGLCIIGTERHESRRIDNQLRGRAGRQGDPGESIFFLSLED 588 (822)
T ss_dssp EEEETTTTTTCCCCCCTTTTTTTSCEEEESSCCSSHHHHHHHHTTSSCSSCCCEEEEEEETTS
T ss_pred EEEcchhhCCcCccCCcchhhcCCCEEEecCCCCCHHHHHHhhCccccCCCCeeEEEEechhH
Confidence 99999999999998 66799999999999999999999999999999999999874
No 71
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.4e-32 Score=311.96 Aligned_cols=369 Identities=17% Similarity=0.269 Sum_probs=247.9
Q ss_pred CCCCCCCccccCCHHHHHHHHHhcCeE---eecCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHh----
Q 007814 106 TGWKPPLPIRRMSKKACDLIRKQWHII---VDGEDIPPPIKNFKDMRFPEPILKKLKAKGIVQPTPIQVQGLPVVL---- 178 (588)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~r~~~~i~---v~g~~~p~p~~~f~~~~l~~~l~~~l~~~g~~~p~~~Q~~~i~~il---- 178 (588)
..|.....+..+..+.++.+..+.... ......+.....|..+...+.... -..++|+|.+++..++
T Consensus 180 ~tWe~~~~~~~~~~~~i~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~------~~~Lr~yQ~egv~~l~~~~~ 253 (800)
T 3mwy_W 180 ATWENATDIVKLAPEQVKHFQNRENSKILPQYSSNYTSQRPRFEKLSVQPPFIK------GGELRDFQLTGINWMAFLWS 253 (800)
T ss_dssp CBCCBHHHHTTTCHHHHHHHHHTTTCTTCSTTCCCCCSCCCCCCCCSSCCTTCC------SSCCCTHHHHHHHHHHHHHT
T ss_pred ccccchhhhhhhhHHHHHHHHHhhhcccCCcchhcccccCCcccccccCCCccC------CCCcCHHHHHHHHHHHHHhh
Confidence 456554445556677777776654321 111122222334554443333221 2379999999998776
Q ss_pred cCCCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEEEEEcCCHHHHHHHHHHHHHHhhcccccCCCCceEEE
Q 007814 179 SGRDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFCLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLL 258 (588)
Q Consensus 179 ~g~dvii~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Q~~~~~~~~~~~~~~~~~~~i~~~~ 258 (588)
.++++|++.+||+|||+.++..+...+... .....+||||| ..|+.||.+++.+++ |++++.+
T Consensus 254 ~~~~~ILademGlGKT~~ai~~i~~l~~~~--------~~~~~~LIV~P-~sll~qW~~E~~~~~--------p~~~v~~ 316 (800)
T 3mwy_W 254 KGDNGILADEMGLGKTVQTVAFISWLIFAR--------RQNGPHIIVVP-LSTMPAWLDTFEKWA--------PDLNCIC 316 (800)
T ss_dssp TTCCEEECCCTTSSTTHHHHHHHHHHHHHH--------SCCSCEEEECC-TTTHHHHHHHHHHHS--------TTCCEEE
T ss_pred cCCCEEEEeCCCcchHHHHHHHHHHHHHhc--------CCCCCEEEEEC-chHHHHHHHHHHHHC--------CCceEEE
Confidence 789999999999999988766554443332 23445899999 678899999999985 4788888
Q ss_pred EEcCcchHHHHHHHh------------cCCcEEEeChHHHHHHHHcccCCCCCcceeEecCcccccccCcHHHHHHHHHh
Q 007814 259 CIGGVDMRSQLEVVK------------RGVHIVVATPGRLKDMLAKKKMNLDNCRYLTLDEADRLVDLGFEDDIREVFDH 326 (588)
Q Consensus 259 ~~gg~~~~~~~~~l~------------~~~~IvV~Tp~~L~~~l~~~~~~l~~~~~lViDEah~l~~~~~~~~i~~i~~~ 326 (588)
++|+........... ...+|+|+|++.+...... +....+++|||||||++.+.+ ......+..
T Consensus 317 ~~g~~~~r~~~~~~~~~~~~~~~~~~~~~~dvvitTy~~l~~~~~~--l~~~~w~~vIvDEaH~lkn~~--s~~~~~l~~ 392 (800)
T 3mwy_W 317 YMGNQKSRDTIREYEFYTNPRAKGKKTMKFNVLLTTYEYILKDRAE--LGSIKWQFMAVDEAHRLKNAE--SSLYESLNS 392 (800)
T ss_dssp CCCSSHHHHHHHHHHSCSCC-----CCCCCSEEEECTTHHHHTHHH--HHTSEEEEEEETTGGGGCCSS--SHHHHHHTT
T ss_pred EeCCHHHHHHHHHHHhhccccccccccccCCEEEecHHHHHhhHHH--HhcCCcceeehhhhhhhcCch--hHHHHHHHH
Confidence 888766555443321 2478999999998654322 222367899999999997654 455666666
Q ss_pred hhhcceeEEEecccc----hHHHHHHHHhc-----------------------------CCCeEEEecCCCCc--ccceE
Q 007814 327 FKAQRQTLLFSATMP----TKIQNFARSAL-----------------------------VKPVTVNVGRAGAA--NLDVI 371 (588)
Q Consensus 327 ~~~~~q~l~~SAT~~----~~i~~~~~~~l-----------------------------~~p~~i~~~~~~~~--~~~~~ 371 (588)
++.. ..+++|||+- ..+..++..+. ..|..+........ .+...
T Consensus 393 l~~~-~rl~LTgTPiqN~l~el~~ll~fL~p~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~p~~lRR~k~dv~~~LP~k~ 471 (800)
T 3mwy_W 393 FKVA-NRMLITGTPLQNNIKELAALVNFLMPGRFTIDQEIDFENQDEEQEEYIHDLHRRIQPFILRRLKKDVEKSLPSKT 471 (800)
T ss_dssp SEEE-EEEEECSCCCSSCSHHHHHHHHHHCSCCC---------CCTTHHHHHHHHHHHTTGGGEEECCGGGGTTTSCCEE
T ss_pred hhhc-cEEEeeCCcCCCCHHHHHHHHHHhCccccCchhhhcccccchhHHHHHHHHHHHHhHHHhhhhHHhhhhccCCcE
Confidence 6544 4688999982 12222111111 11111110000000 00000
Q ss_pred EEeee---------------------------------------------------------------------------
Q 007814 372 QEVEY--------------------------------------------------------------------------- 376 (588)
Q Consensus 372 ~~~~~--------------------------------------------------------------------------- 376 (588)
....+
T Consensus 472 ~~~v~v~ls~~q~~~Y~~i~~~~~~~l~~~~~~~~~~~l~~l~~Lrk~~~hp~l~~~~~~~~~~~~~~~~~~~~~~~~~l 551 (800)
T 3mwy_W 472 ERILRVELSDVQTEYYKNILTKNYSALTAGAKGGHFSLLNIMNELKKASNHPYLFDNAEERVLQKFGDGKMTRENVLRGL 551 (800)
T ss_dssp EEEEEECCCHHHHHHHHHHHHHCCC----------CTHHHHHHHHHHHHHCGGGSSSHHHHHCCCC----CCSHHHHHHH
T ss_pred EEEEEeCCCHHHHHHHHHHHHHHHHHHhhccccchhhHHHHHHHHHHHhcChhhhcchHHHHHHhcccccccHHHHHHHh
Confidence 00000
Q ss_pred hhhHHHH---HHHHHHhhcCCCCEEEEeCccccHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhcCCc---EEEEE
Q 007814 377 VKQEAKI---VYLLECLQKTPPPVLIFCENKADVDDIHEYLLLKGVEAVAVHGGKDQEEREYAISSFKAGKK---DVLVA 450 (588)
Q Consensus 377 ~~~~~k~---~~ll~~l~~~~~~viIF~~s~~~~~~l~~~L~~~g~~~~~ihg~~~~~~R~~~~~~f~~g~~---~vLVa 450 (588)
.....|+ ..++..+...+.++||||.....++.|..+|...|+.+..+||+++..+|..+++.|+++.. .+|++
T Consensus 552 ~~~s~K~~~L~~lL~~~~~~g~kvLIFsq~~~~ld~L~~~L~~~g~~~~~i~G~~~~~eR~~~i~~F~~~~~~~~v~LlS 631 (800)
T 3mwy_W 552 IMSSGKMVLLDQLLTRLKKDGHRVLIFSQMVRMLDILGDYLSIKGINFQRLDGTVPSAQRRISIDHFNSPDSNDFVFLLS 631 (800)
T ss_dssp HHTCHHHHHHHHHHHHHTTTTCCEEEEESCHHHHHHHHHHHHHHTCCCEEESTTSCHHHHHHHHHTTSSTTCSCCCEEEE
T ss_pred hhcChHHHHHHHHHHHHhhCCCeEEEEechHHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHhhCCCCCceEEEEe
Confidence 0011233 33344444567899999999999999999999999999999999999999999999998654 49999
Q ss_pred cCccccCCCCCCcceEEecCCCCChhHHHHHhcccccCCCccEE--EEEecCCC
Q 007814 451 TDVASKGLDFPDIQHVINYDMPAEIENYVHRIGRTGRCGKTGIA--TTFINKNQ 502 (588)
Q Consensus 451 T~~~~~GlDip~v~~VI~~~~p~s~~~y~qriGRagR~g~~g~~--~~~~~~~~ 502 (588)
|.+++.|||++.+++||+||+|||+..+.||+||++|.|++..+ +.|+..+.
T Consensus 632 t~agg~GlNL~~a~~VI~~D~~wnp~~~~Qa~gR~~RiGQ~k~V~Vyrlv~~~T 685 (800)
T 3mwy_W 632 TRAGGLGINLMTADTVVIFDSDWNPQADLQAMARAHRIGQKNHVMVYRLVSKDT 685 (800)
T ss_dssp HHHHTTTCCCTTCCEEEESSCCSCSHHHHHHHTTTSCSSCCSCEEEEEEEETTS
T ss_pred cccccCCCCccccceEEEecCCCChhhHHHHHHHHHhcCCCceEEEEEEecCCC
Confidence 99999999999999999999999999999999999999987654 45666653
No 72
>2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system, helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP; 2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B*
Probab=100.00 E-value=5.2e-32 Score=311.59 Aligned_cols=309 Identities=16% Similarity=0.125 Sum_probs=213.6
Q ss_pred CCCcHHHHHHHHHHhc--------------CCCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEEEEEcCCH
Q 007814 164 VQPTPIQVQGLPVVLS--------------GRDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFCLIVCPSR 229 (588)
Q Consensus 164 ~~p~~~Q~~~i~~il~--------------g~dvii~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~Lil~Ptr 229 (588)
..|+|+|..|++.++. +++++++++||||||+++ ++++..+.. .+..+++|||+|++
T Consensus 270 ~~~R~~Q~~AI~~il~~i~~~~~~~~~~~~~~~gli~~~TGSGKT~t~-~~l~~ll~~--------~~~~~rvLvlvpr~ 340 (1038)
T 2w00_A 270 LVMRPYQIAATERILWKIKSSFTAKNWSKPESGGYIWHTTGSGKTLTS-FKAARLATE--------LDFIDKVFFVVDRK 340 (1038)
T ss_dssp EECCHHHHHHHHHHHHHHHHHHHHTCCSSGGGSEEEEECTTSSHHHHH-HHHHHHHTT--------CTTCCEEEEEECGG
T ss_pred ccCCHHHHHHHHHHHHHHHhcccccccccCCCCEEEEecCCCCHHHHH-HHHHHHHHh--------cCCCceEEEEeCcH
Confidence 3599999999999875 378999999999999997 666544322 12346899999999
Q ss_pred HHHHHHHHHHHHHhhcccccCCCCceEEEEEcCcchHHHHHHHh-cCCcEEEeChHHHHHHHHccc--CCCCCcceeEec
Q 007814 230 ELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVK-RGVHIVVATPGRLKDMLAKKK--MNLDNCRYLTLD 306 (588)
Q Consensus 230 ~La~Q~~~~~~~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~-~~~~IvV~Tp~~L~~~l~~~~--~~l~~~~~lViD 306 (588)
+|+.|+.+.+..+... .+.++.+.......+. .+.+|+|+||++|..++.... ..+..+.+||+|
T Consensus 341 eL~~Q~~~~f~~f~~~------------~v~~~~s~~~l~~~L~~~~~~IiVtTiqkl~~~l~~~~~~~~~~~~~lvIiD 408 (1038)
T 2w00_A 341 DLDYQTMKEYQRFSPD------------SVNGSENTAGLKRNLDKDDNKIIVTTIQKLNNLMKAESDLPVYNQQVVFIFD 408 (1038)
T ss_dssp GCCHHHHHHHHTTSTT------------CSSSSCCCHHHHHHHHCSSCCEEEEEHHHHHHHHHHCCCCGGGGSCEEEEEE
T ss_pred HHHHHHHHHHHHhccc------------ccccccCHHHHHHHhcCCCCCEEEEEHHHHHHHHhcccchhccccccEEEEE
Confidence 9999999999887531 1234445555555554 468999999999998876532 235678899999
Q ss_pred CcccccccCcHHHHHHHHHhhhhcceeEEEecccchH--------HHH-------------HHHHhcCCCeEEEecCCCC
Q 007814 307 EADRLVDLGFEDDIREVFDHFKAQRQTLLFSATMPTK--------IQN-------------FARSALVKPVTVNVGRAGA 365 (588)
Q Consensus 307 Eah~l~~~~~~~~i~~i~~~~~~~~q~l~~SAT~~~~--------i~~-------------~~~~~l~~p~~i~~~~~~~ 365 (588)
|||++... .....+...++ ..++++|||||... ... .+......|+.+.......
T Consensus 409 EAHrs~~~---~~~~~I~~~~p-~a~~lgfTATP~~~~~~~~~~~t~~~FG~~i~~Y~l~~AI~dg~l~p~~v~y~~v~~ 484 (1038)
T 2w00_A 409 ECHRSQFG---EAQKNLKKKFK-RYYQFGFTGTPIFPENALGSETTASVFGRELHSYVITDAIRDEKVLKFKVDYNDVRP 484 (1038)
T ss_dssp SCCTTHHH---HHHHHHHHHCS-SEEEEEEESSCCCSTTCTTSCCHHHHHCSEEEEECHHHHHHHTSSCCEEEEECCCCG
T ss_pred ccchhcch---HHHHHHHHhCC-cccEEEEeCCccccccchhhhHHHHHhCCeeEeecHHHHHhCCCcCCeEEEEEeccc
Confidence 99997642 34566667665 46899999999742 111 1222222333322111000
Q ss_pred cc----c--c------eEEEeeehhhHHHHHH----HHHHhhc---------CCCCEEEEeCccccHHHHHHHHHHcC--
Q 007814 366 AN----L--D------VIQEVEYVKQEAKIVY----LLECLQK---------TPPPVLIFCENKADVDDIHEYLLLKG-- 418 (588)
Q Consensus 366 ~~----~--~------~~~~~~~~~~~~k~~~----ll~~l~~---------~~~~viIF~~s~~~~~~l~~~L~~~g-- 418 (588)
.. . + +.+ ........++.. ++..... .+.++||||+++..|..+++.|...+
T Consensus 485 ~~~~~~~e~d~~~~~~i~~-~~~l~~~~ri~~I~~~Il~~~~~~~~~~~~~~~g~kamVf~~S~~~A~~~~~~l~~~~~~ 563 (1038)
T 2w00_A 485 QFKSLETETDEKKLSAAEN-QQAFLHPMRIQEITQYILNNFRQKTHRTFPGSKGFNAMLAVSSVDAAKAYYATFKRLQEE 563 (1038)
T ss_dssp GGHHHHTCCCHHHHHHTCS-TTTTTCHHHHHHHHHHHHHHHHHHTTCSSSSCCCCEEEEEESSHHHHHHHHHHHHHHHHH
T ss_pred hhhhccccccHHHHHHHHH-HHHhcCHHHHHHHHHHHHHHHHHhhhhhcccCCCCcEEEEECCHHHHHHHHHHHHhhhhh
Confidence 00 0 0 000 000111222222 3332211 23579999999999999999997764
Q ss_pred ----------CcE-EEEeCC----------C----------CH-----------------------------HHHHHHHH
Q 007814 419 ----------VEA-VAVHGG----------K----------DQ-----------------------------EEREYAIS 438 (588)
Q Consensus 419 ----------~~~-~~ihg~----------~----------~~-----------------------------~~R~~~~~ 438 (588)
+.+ .++||. + ++ .+|..+++
T Consensus 564 ~~~~~~~~~~~k~avv~s~~~~~~~~~~G~~~~e~~~~~~~~~~~r~~l~~~I~dyn~~f~~~~~~~~~~~~~~R~~i~~ 643 (1038)
T 2w00_A 564 AANKSATYKPLRIATIFSFAANEEQNAIGEISDETFDTSAMDSSAKEFLDAAIREYNSHFKTNFSTDSNGFQNYYRDLAQ 643 (1038)
T ss_dssp HTTTSSSCCCCCEEEECCCCC------CCCCCCCCSCGGGSCHHHHHHHHHHHHHHHHHHTCCCCSSHHHHHHHHHHHHH
T ss_pred hcccccccccCcEEEEEeCCCccccccccccccccccccccchhHHHHHHHHHHHHHHHhcccccccchhhhHHHHHHHH
Confidence 455 455542 2 22 24788999
Q ss_pred HHhcCCcEEEEEcCccccCCCCCCcceEEecCCCCChhHHHHHhcccccCCCc----cEEEEEec
Q 007814 439 SFKAGKKDVLVATDVASKGLDFPDIQHVINYDMPAEIENYVHRIGRTGRCGKT----GIATTFIN 499 (588)
Q Consensus 439 ~f~~g~~~vLVaT~~~~~GlDip~v~~VI~~~~p~s~~~y~qriGRagR~g~~----g~~~~~~~ 499 (588)
+|++|+++|||+|+++.+|+|+|.+ +|+++|.|.+...|+|++||++|.+.. |.++.|++
T Consensus 644 ~Fk~g~i~ILIvvd~lltGfDiP~l-~tlylDkpl~~~~liQaIGRtnR~~~~~K~~G~IVdf~~ 707 (1038)
T 2w00_A 644 RVKNQDIDLLIVVGMFLTGFDAPTL-NTLFVDKNLRYHGLMQAFSRTNRIYDATKTFGNIVTFRD 707 (1038)
T ss_dssp HHHTTSSSEEEESSTTSSSCCCTTE-EEEEEESCCCHHHHHHHHHTTCCCCCTTCCSEEEEESSC
T ss_pred HHHcCCCeEEEEcchHHhCcCcccc-cEEEEccCCCccceeehhhccCcCCCCCCCcEEEEEccc
Confidence 9999999999999999999999999 788999999999999999999998754 77777765
No 73
>1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19
Probab=100.00 E-value=1.6e-30 Score=289.82 Aligned_cols=321 Identities=17% Similarity=0.216 Sum_probs=218.5
Q ss_pred CCcHHHHHHHHHHh---------cCCCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEEEEEcCCHHHHHHH
Q 007814 165 QPTPIQVQGLPVVL---------SGRDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFCLIVCPSRELARQT 235 (588)
Q Consensus 165 ~p~~~Q~~~i~~il---------~g~dvii~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Q~ 235 (588)
.|+|+|.+++..+. .++.+|+.++||+|||+.++..+...+... +.......++|||||+ +|+.||
T Consensus 55 ~LrpyQ~~gv~~l~~~~~~~~~~~~~g~ILad~mGlGKT~~~i~~i~~l~~~~----~~~~p~~~~~LiV~P~-sll~qW 129 (644)
T 1z3i_X 55 VLRPHQREGVKFLWDCVTGRRIENSYGCIMADEMGLGKTLQCITLIWTLLKQS----PDCKPEIDKVIVVSPS-SLVRNW 129 (644)
T ss_dssp TCCHHHHHHHHHHHHHHTTSSSTTCCEEEECCCTTSCHHHHHHHHHHHHHHCC----TTSSCSCSCEEEEECH-HHHHHH
T ss_pred cccHHHHHHHHHHHHhhhcccccCCCCeEeeeCCCchHHHHHHHHHHHHHHhC----ccccCCCCcEEEEecH-HHHHHH
Confidence 69999999999874 456799999999999998766665443221 1111123468999997 889999
Q ss_pred HHHHHHHhhcccccCCCCceEEEEEcCcchHH--HHHHHhc------CCcEEEeChHHHHHHHHcccCCCCCcceeEecC
Q 007814 236 YEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRS--QLEVVKR------GVHIVVATPGRLKDMLAKKKMNLDNCRYLTLDE 307 (588)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~i~~~~~~gg~~~~~--~~~~l~~------~~~IvV~Tp~~L~~~l~~~~~~l~~~~~lViDE 307 (588)
.+++.+++.. .+.+..++||..... ....... ..+|+|+|++.+.... ..+....+++||+||
T Consensus 130 ~~E~~~~~~~-------~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~l~~~~--~~l~~~~~~~vI~DE 200 (644)
T 1z3i_X 130 YNEVGKWLGG-------RVQPVAIDGGSKDEIDSKLVNFISQQGMRIPTPILIISYETFRLHA--EVLHKGKVGLVICDE 200 (644)
T ss_dssp HHHHHHHHGG-------GCCEEEECSSCHHHHHHHHHHHHCCCSSCCSCCEEEEEHHHHHHHT--TTTTTSCCCEEEETT
T ss_pred HHHHHHHcCC-------CeeEEEEeCCCHHHHHHHHHHHHHhcCCCCCCcEEEeeHHHHHhhH--HHhhcCCccEEEEEC
Confidence 9999999753 355666777643321 1112211 3789999999886442 233445788999999
Q ss_pred cccccccCcHHHHHHHHHhhhhcceeEEEecccchHH-------H------------HH---------------------
Q 007814 308 ADRLVDLGFEDDIREVFDHFKAQRQTLLFSATMPTKI-------Q------------NF--------------------- 347 (588)
Q Consensus 308 ah~l~~~~~~~~i~~i~~~~~~~~q~l~~SAT~~~~i-------~------------~~--------------------- 347 (588)
||++.+.. ......+..++. ...+++|||+-.+- . .|
T Consensus 201 aH~ikn~~--~~~~~al~~l~~-~~rl~LTgTPiqN~l~El~sll~fl~p~~l~~~~~F~~~f~~pi~~~~~~~~~~~~~ 277 (644)
T 1z3i_X 201 GHRLKNSD--NQTYLALNSMNA-QRRVLISGTPIQNDLLEYFSLVHFVNSGILGTAQEFKKRFEIPILKGRDADASDKDR 277 (644)
T ss_dssp GGGCCTTC--HHHHHHHHHHCC-SEEEEECSSCSGGGGGGCHHHHHHHHHHHHCCHHHHHHHTHHHHHHHHSTTCCSHHH
T ss_pred ceecCChh--hHHHHHHHhccc-CcEEEEecCcccCCHHHHHHHHHhhCCCcCCCHHHHHHhhcchhhhcCCcCCCHHHH
Confidence 99998654 444445555543 45799999983210 0 00
Q ss_pred -------------HHHhcC----------CCe--E--EEecCC----------------------CCcccceEE------
Q 007814 348 -------------ARSALV----------KPV--T--VNVGRA----------------------GAANLDVIQ------ 372 (588)
Q Consensus 348 -------------~~~~l~----------~p~--~--i~~~~~----------------------~~~~~~~~~------ 372 (588)
+..++. -|. . +.+... +........
T Consensus 278 ~~~~~~~~~L~~~l~~~~lRR~k~~v~~~LP~k~~~~v~~~ls~~q~~lY~~~~~~~~~~~~~~~g~~~~~~l~~l~~Lr 357 (644)
T 1z3i_X 278 AAGEQKLQELISIVNRCLIRRTSDILSKYLPVKIEQVVCCNLTPLQKELYKLFLKQAKPVESLQTGKISVSSLSSITSLK 357 (644)
T ss_dssp HHHHHHHHHHHHHHHHHEECCCGGGGGGTSCCEEEEEEEECCCHHHHHHHHHHHHHHCGGGSSCTTCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHhHhhhCCCceEEEEEeCCCHHHHHHHHHHHHHHHHHHHHhcCccchhHHHHHHHHH
Confidence 000100 010 0 000000 000000000
Q ss_pred -----------------------------E----eeehhhHHH---HHHHHHHhh-cCCCCEEEEeCccccHHHHHHHHH
Q 007814 373 -----------------------------E----VEYVKQEAK---IVYLLECLQ-KTPPPVLIFCENKADVDDIHEYLL 415 (588)
Q Consensus 373 -----------------------------~----~~~~~~~~k---~~~ll~~l~-~~~~~viIF~~s~~~~~~l~~~L~ 415 (588)
. ........| +..++..+. ..+.++||||++...++.+...|.
T Consensus 358 k~c~hp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~K~~~l~~ll~~~~~~~~~k~lIFs~~~~~~~~l~~~l~ 437 (644)
T 1z3i_X 358 KLCNHPALIYEKCLTGEEGFDGALDLFPQNYSTKAVEPQLSGKMLVLDYILAMTRTTTSDKVVLVSNYTQTLDLFEKLCR 437 (644)
T ss_dssp HHHHCTHHHHHHHHHTCTTCTTGGGTSCSSCCSSSCCGGGSHHHHHHHHHHHHHHHHCCCEEEEEESCHHHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHhcccchhhhHHhhccccccccccCcccChHHHHHHHHHHHHhhcCCCEEEEEEccHHHHHHHHHHHH
Confidence 0 000001122 233333333 246799999999999999999999
Q ss_pred HcCCcEEEEeCCCCHHHHHHHHHHHhcCCc---EEEEEcCccccCCCCCCcceEEecCCCCChhHHHHHhcccccCCCcc
Q 007814 416 LKGVEAVAVHGGKDQEEREYAISSFKAGKK---DVLVATDVASKGLDFPDIQHVINYDMPAEIENYVHRIGRTGRCGKTG 492 (588)
Q Consensus 416 ~~g~~~~~ihg~~~~~~R~~~~~~f~~g~~---~vLVaT~~~~~GlDip~v~~VI~~~~p~s~~~y~qriGRagR~g~~g 492 (588)
..|+.+..+||++++.+|..+++.|++|.. .+||+|.++++|||++++++||+||+|||+..|.|++||++|.|++.
T Consensus 438 ~~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~~v~L~st~a~g~Glnl~~a~~Vi~~d~~wnp~~~~Qa~gR~~R~Gq~~ 517 (644)
T 1z3i_X 438 NRRYLYVRLDGTMSIKKRAKIVERFNNPSSPEFIFMLSSKAGGCGLNLIGANRLVMFDPDWNPANDEQAMARVWRDGQKK 517 (644)
T ss_dssp HHTCCEEEECSSCCHHHHHHHHHHHHSTTCCCCEEEEEGGGSCTTCCCTTEEEEEECSCCSSHHHHHHHHTTSSSTTCCS
T ss_pred HCCCCEEEEeCCCCHHHHHHHHHHhcCCCCCcEEEEEecccccCCcccccCCEEEEECCCCCccHHHHHHHhhhhcCCCC
Confidence 999999999999999999999999999875 48999999999999999999999999999999999999999999876
Q ss_pred E--EEEEecCCC
Q 007814 493 I--ATTFINKNQ 502 (588)
Q Consensus 493 ~--~~~~~~~~~ 502 (588)
. ++.|+..+.
T Consensus 518 ~v~v~~lv~~~t 529 (644)
T 1z3i_X 518 TCYIYRLLSTGT 529 (644)
T ss_dssp CEEEEEEEETTS
T ss_pred ceEEEEEEECCC
Confidence 4 455666653
No 74
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens}
Probab=99.97 E-value=5.5e-31 Score=248.22 Aligned_cols=183 Identities=74% Similarity=1.081 Sum_probs=153.5
Q ss_pred HHHhcCCCeEEEecCCCCcccceEEEeeehhhHHHHHHHHHHhhcCCCCEEEEeCccccHHHHHHHHHHcCCcEEEEeCC
Q 007814 348 ARSALVKPVTVNVGRAGAANLDVIQEVEYVKQEAKIVYLLECLQKTPPPVLIFCENKADVDDIHEYLLLKGVEAVAVHGG 427 (588)
Q Consensus 348 ~~~~l~~p~~i~~~~~~~~~~~~~~~~~~~~~~~k~~~ll~~l~~~~~~viIF~~s~~~~~~l~~~L~~~g~~~~~ihg~ 427 (588)
...++.+|..+.++..+..+.++.|.+.++....|+..|++.+...++++||||+++..++.+++.|...|+.+..+||+
T Consensus 8 ~~~~~~~p~~i~v~~~~~~~~~i~q~~~~~~~~~K~~~L~~~l~~~~~~~lVF~~~~~~~~~l~~~L~~~g~~~~~lhg~ 87 (191)
T 2p6n_A 8 SSGVDLGTENLYFQSMGAASLDVIQEVEYVKEEAKMVYLLECLQKTPPPVLIFAEKKADVDAIHEYLLLKGVEAVAIHGG 87 (191)
T ss_dssp --------------------CCSEEEEEECCGGGHHHHHHHHHTTSCSCEEEECSCHHHHHHHHHHHHHHTCCEEEECTT
T ss_pred cccccCCCEEEEECCCCCCCcCceEEEEEcChHHHHHHHHHHHHhCCCCEEEEECCHHHHHHHHHHHHHcCCcEEEEeCC
Confidence 34577889888888888888899999999999999999999998888899999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHhcCCcEEEEEcCccccCCCCCCcceEEecCCCCChhHHHHHhcccccCCCccEEEEEecCCCChhHH
Q 007814 428 KDQEEREYAISSFKAGKKDVLVATDVASKGLDFPDIQHVINYDMPAEIENYVHRIGRTGRCGKTGIATTFINKNQSETTL 507 (588)
Q Consensus 428 ~~~~~R~~~~~~f~~g~~~vLVaT~~~~~GlDip~v~~VI~~~~p~s~~~y~qriGRagR~g~~g~~~~~~~~~~~~~~~ 507 (588)
+++.+|..+++.|++|+.+|||||+++++|+|+|++++||+||+|+++..|+||+||+||.|+.|.+++|+++..+...+
T Consensus 88 ~~~~~R~~~l~~F~~g~~~vLvaT~~~~~Gldi~~v~~VI~~d~p~~~~~~~qr~GR~gR~g~~g~~i~l~~~~~~~~~~ 167 (191)
T 2p6n_A 88 KDQEERTKAIEAFREGKKDVLVATDVASKGLDFPAIQHVINYDMPEEIENYVHRIGRTGCSGNTGIATTFINKACDESVL 167 (191)
T ss_dssp SCHHHHHHHHHHHHHTSCSEEEECHHHHTTCCCCCCSEEEESSCCSSHHHHHHHHTTSCC---CCEEEEEECTTSCHHHH
T ss_pred CCHHHHHHHHHHHhcCCCEEEEEcCchhcCCCcccCCEEEEeCCCCCHHHHHHHhCccccCCCCcEEEEEEcCchhHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999987677889
Q ss_pred HHHHHHHHHhcccCchHHhhccC
Q 007814 508 LDLKHLLQEAKQRIPPVLAELND 530 (588)
Q Consensus 508 ~~l~~~l~~~~~~~p~~l~~l~~ 530 (588)
..+.+++...++.+|++|.++.+
T Consensus 168 ~~l~~~l~~~~~~~p~~l~~~~~ 190 (191)
T 2p6n_A 168 MDLKALLLEAKQKVPPVLQVLHC 190 (191)
T ss_dssp HHHHHHHHHTTCCCCHHHHSTTC
T ss_pred HHHHHHHHHccCcCCHHHHhhcC
Confidence 99999999999999999988765
No 75
>2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold, ATPase, parallel dimer; 2.80A {Thermus thermophilus}
Probab=99.96 E-value=8e-28 Score=263.52 Aligned_cols=315 Identities=21% Similarity=0.246 Sum_probs=233.5
Q ss_pred CCCCCCcHHHHHHHHHHhcCCCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEEEEEcCCHHHHHHHHHHHH
Q 007814 161 KGIVQPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFCLIVCPSRELARQTYEVVE 240 (588)
Q Consensus 161 ~g~~~p~~~Q~~~i~~il~g~dvii~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Q~~~~~~ 240 (588)
.|+ .||++|..++|.++.|+ |+.+.||+|||++|.+|++...+ .|..++||+||++||.|.++.+.
T Consensus 76 lG~-~Pt~VQ~~~ip~LlqG~--IaeakTGeGKTLvf~Lp~~L~aL-----------~G~qv~VvTPTreLA~Qdae~m~ 141 (997)
T 2ipc_A 76 LGM-RHFDVQLIGGAVLHEGK--IAEMKTGEGKTLVATLAVALNAL-----------TGKGVHVVTVNDYLARRDAEWMG 141 (997)
T ss_dssp TCC-CCCHHHHHHHHHHHTTS--EEECCSTHHHHHHHHHHHHHHHT-----------TCSCCEEEESSHHHHHHHHHHHH
T ss_pred hCC-CCcHHHHhhcccccCCc--eeeccCCCchHHHHHHHHHHHHH-----------hCCCEEEEeCCHHHHHHHHHHHH
Confidence 488 99999999999999998 99999999999999999975543 25579999999999999999999
Q ss_pred HHhhcccccCCCCceEEEEEcCcchHHHHHHHhcCCcEEEeChHHH-HHHHHccc------CCCC---CcceeEecCccc
Q 007814 241 QFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRL-KDMLAKKK------MNLD---NCRYLTLDEADR 310 (588)
Q Consensus 241 ~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~L-~~~l~~~~------~~l~---~~~~lViDEah~ 310 (588)
.++..+ ++++.+++||.+... .....+++|+|+||++| .|+|..+. +.++ .+.++|+||+|.
T Consensus 142 ~l~~~l------GLsv~~i~Gg~~~~~--r~~ay~~DIvyGTpgrlgfDyLrd~m~~~~~~l~~r~d~~l~~lIIDEaDs 213 (997)
T 2ipc_A 142 PVYRGL------GLSVGVIQHASTPAE--RRKAYLADVTYVTNSELGFDYLRDNMAISPDQLVLRHDHPLHYAIIDEVDS 213 (997)
T ss_dssp HHHHTT------TCCEEECCTTCCHHH--HHHHHTSSEEEEEHHHHHHHHHHHTSCSSTTTCCSCSSSSSCEEEETTHHH
T ss_pred HHHHhc------CCeEEEEeCCCCHHH--HHHHcCCCEEEECchhhhhHHHHHhhhcchhhcccccCCCcceEEEechHH
Confidence 999877 899999999987543 33344699999999999 88887652 5677 899999999999
Q ss_pred cc-ccCcH---------------HHHHHHHHhhhh---------------------------------------------
Q 007814 311 LV-DLGFE---------------DDIREVFDHFKA--------------------------------------------- 329 (588)
Q Consensus 311 l~-~~~~~---------------~~i~~i~~~~~~--------------------------------------------- 329 (588)
|+ +.++. ..+..++..++.
T Consensus 214 mLiDeartPLIISgp~~~~~~lY~~~~~~i~~L~~~~~~~~~~~~~~~~dy~vdek~r~v~LTe~G~~~~E~~l~i~~Ly 293 (997)
T 2ipc_A 214 ILIDEARTPLIISGPAEKATDLYYKMAEIAKKLERGLPAEPGVRKEPTGDYTVEEKNRSVHLTLQGIAKAEKLLGIEGLF 293 (997)
T ss_dssp HTTSSTTSCEEEEESCSSCHHHHHHHHHHHHHSCCCCCCCSSSCCCSSCCCCCTTSCCCCCCCHHHHHHHHHHHSCHHHH
T ss_pred HHHhCCCCCeeeeCCCccchHHHHHHHHHHHHhhhccccccccccCCCCCeEEecCcceEEEchHHHHHHHHHcCCcccc
Confidence 87 22210 011111111100
Q ss_pred --------------------------------------------------------------------------------
Q 007814 330 -------------------------------------------------------------------------------- 329 (588)
Q Consensus 330 -------------------------------------------------------------------------------- 329 (588)
T Consensus 294 ~~~n~~l~~~i~~ALrA~~lf~rd~dYiV~dgeV~IVDe~TGR~m~grrwsdGLHQAiEAKEgv~I~~e~~TlAsIT~Qn 373 (997)
T 2ipc_A 294 SPENMELAHMLIQAIRAKELYHRDRDYIVQDGQVIIVDEFTGRLMPGRRYGEGLHQAIEAKEGVRIERENQTLATITYQN 373 (997)
T ss_dssp TTTCHHHHHHHHHHHHHHHSSCHHHHEEECSSCEEEEETTTTEECTTCCCGGGHHHHHHHHTTCCCCCSCEEEEEECHHH
T ss_pred CchhHHHHHHHHHHHHHHHHHhcCCCeEEECCEEEEEECCCCeeCCCCcccHHHHHHHHHHhCCCCCCCceeeeeeeHHH
Confidence
Q ss_pred ----cceeEEEecccchHHHHHHHHhcCCCeEEEecCCCCcccceEEEeeehhhHHHHHHHHHHhh---cCCCCEEEEeC
Q 007814 330 ----QRQTLLFSATMPTKIQNFARSALVKPVTVNVGRAGAANLDVIQEVEYVKQEAKIVYLLECLQ---KTPPPVLIFCE 402 (588)
Q Consensus 330 ----~~q~l~~SAT~~~~i~~~~~~~l~~p~~i~~~~~~~~~~~~~~~~~~~~~~~k~~~ll~~l~---~~~~~viIF~~ 402 (588)
...+.+||+|....-..|...+-..-+.+ ....+....+ .....|.....|+..+++.+. +.+.||||+|.
T Consensus 374 yFr~Y~kLsGMTGTA~tE~~Ef~~iY~l~Vv~I-PTn~p~~R~D-~~d~vy~t~~~K~~AIv~eI~~~~~~GqPVLVgT~ 451 (997)
T 2ipc_A 374 FFRLYEKRAGMTGTAKTEEKEFQEIYGMDVVVV-PTNRPVIRKD-FPDVVYRTEKGKFYAVVEEIAEKYERGQPVLVGTI 451 (997)
T ss_dssp HHTTSSEEEEEESSCGGGHHHHHHHHCCCEEEC-CCSSCCCCEE-EEEEEESSHHHHHHHHHHHHHHHHHHTCCEEEECS
T ss_pred HHHhChHheecCCCchHHHHHHHHHhCCCEEEc-CCCCCccccc-CCCeEEcCHHHHHHHHHHHHHHHHHCCCCEEEEeC
Confidence 01456788888777666666654442222 2222222222 233456667778777776554 46889999999
Q ss_pred ccccHHHHHHHHH-------------------------------------------------------------------
Q 007814 403 NKADVDDIHEYLL------------------------------------------------------------------- 415 (588)
Q Consensus 403 s~~~~~~l~~~L~------------------------------------------------------------------- 415 (588)
|+...+.++.+|.
T Consensus 452 SIe~SE~LS~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~ 531 (997)
T 2ipc_A 452 SIEKSERLSQMLKEPRLYLPRLEMRLELFKKASQKQQGPEWERLRKLLERPAQLKDEDLAPFEGLIPPKGNLRTAWEGLK 531 (997)
T ss_dssp SHHHHHHHHHHHHCGGGGHHHHHHHHHHHHHHHTTCCSHHHHHHHHHTSSSTTCSHHHHSGGGGGCCSSHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhhccccchhhhhhhhhhhhhhhhccccchhhhhhhhhccccccccccccccccccccccccccccccc
Confidence 9999999999998
Q ss_pred ---------HcCCcEEEEeCCCCHHHHHHHHHHHhcC-CcEEEEEcCccccCCCCCCc-------------------c--
Q 007814 416 ---------LKGVEAVAVHGGKDQEEREYAISSFKAG-KKDVLVATDVASKGLDFPDI-------------------Q-- 464 (588)
Q Consensus 416 ---------~~g~~~~~ihg~~~~~~R~~~~~~f~~g-~~~vLVaT~~~~~GlDip~v-------------------~-- 464 (588)
..|++.-++++.....+- .++. ..| .-.|-|||++++||.||.=- .
T Consensus 532 ~~~~~~~~~~~gI~H~VLNAK~he~EA-eIIA--qAG~~GaVTIATNMAGRGTDIkLggn~e~~~~~~~~~~~~~~~~~~ 608 (997)
T 2ipc_A 532 RAVHTLAVLRQGIPHQVLNAKHHAREA-EIVA--QAGRSKTVTIATNMAGRGTDIKLGGNPEYLAAALLEKEGFDRYEWK 608 (997)
T ss_dssp HHHHHHHHHHHCCCCCEECSSSHHHHH-HHHH--TTTSTTCEEEECSSTTTTSCCCSSCCHHHHHHHTTSSSCSSTTHHH
T ss_pred hhhhhhHHHHcCCCeeeccccchHHHH-HHHH--hcCCCCeEEEEecccCCCcCeecCCCHHHHHHHHHHhhcccccccc
Confidence 567777777776433222 2222 234 34689999999999998532 1
Q ss_pred -----------------------------------------------------eEEecCCCCChhHHHHHhcccccCCCc
Q 007814 465 -----------------------------------------------------HVINYDMPAEIENYVHRIGRTGRCGKT 491 (588)
Q Consensus 465 -----------------------------------------------------~VI~~~~p~s~~~y~qriGRagR~g~~ 491 (588)
|||--..+.|..--.|-.||+||-|.+
T Consensus 609 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~V~e~GGLhVIGTeRhESrRIDnQLRGRaGRQGDP 688 (997)
T 2ipc_A 609 VELFIKKMVAGKEEEARALAQELGIREELLERIREIREECKQDEERVRALGGLFIIGTERHESRRIDNQLRGRAGRQGDP 688 (997)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTTCCCCEEESSCCSSHHHHHHHHHTSSCSSCC
T ss_pred cccccccccccchhhccccchhhhhhhhHHHHHHHhhhhhhhhhhHHHhcCCeEEEeccCCchHHHHHHHhcccccCCCC
Confidence 788888889999999999999999999
Q ss_pred cEEEEEecCCC
Q 007814 492 GIATTFINKNQ 502 (588)
Q Consensus 492 g~~~~~~~~~~ 502 (588)
|.+..|++-++
T Consensus 689 GsSrF~LSLeD 699 (997)
T 2ipc_A 689 GGSRFYVSFDD 699 (997)
T ss_dssp CEEEEEEESSS
T ss_pred CCeEEEEECCh
Confidence 99999998763
No 76
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=99.96 E-value=1.3e-28 Score=274.20 Aligned_cols=109 Identities=21% Similarity=0.348 Sum_probs=104.5
Q ss_pred cCCCCEEEEeCccccHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhcCCcEEEEEcCccccCCCCCCcceEEecCC
Q 007814 392 KTPPPVLIFCENKADVDDIHEYLLLKGVEAVAVHGGKDQEEREYAISSFKAGKKDVLVATDVASKGLDFPDIQHVINYDM 471 (588)
Q Consensus 392 ~~~~~viIF~~s~~~~~~l~~~L~~~g~~~~~ihg~~~~~~R~~~~~~f~~g~~~vLVaT~~~~~GlDip~v~~VI~~~~ 471 (588)
+.+.++||||+|+..++.++++|...|+.+..+||++++.+|..+++.|++|+++|||||+++++|+|+|++++||+++.
T Consensus 437 ~~~~~vlVf~~t~~~ae~L~~~L~~~gi~~~~lh~~~~~~~R~~~~~~f~~g~~~VLvaT~~l~~GlDip~v~lVI~~d~ 516 (664)
T 1c4o_A 437 ARGERTLVTVLTVRMAEELTSFLVEHGIRARYLHHELDAFKRQALIRDLRLGHYDCLVGINLLREGLDIPEVSLVAILDA 516 (664)
T ss_dssp HTTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTCCHHHHHHHHHHHHTTSCSEEEESCCCCTTCCCTTEEEEEETTT
T ss_pred hcCCEEEEEECCHHHHHHHHHHHHhcCCCceeecCCCCHHHHHHHHHHhhcCCceEEEccChhhcCccCCCCCEEEEeCC
Confidence 35679999999999999999999999999999999999999999999999999999999999999999999999999997
Q ss_pred -----CCChhHHHHHhcccccCCCccEEEEEecCC
Q 007814 472 -----PAEIENYVHRIGRTGRCGKTGIATTFINKN 501 (588)
Q Consensus 472 -----p~s~~~y~qriGRagR~g~~g~~~~~~~~~ 501 (588)
|.|..+|+||+|||||.| .|.+++|++..
T Consensus 517 d~~G~p~s~~~~iQr~GRagR~~-~G~~i~~~~~~ 550 (664)
T 1c4o_A 517 DKEGFLRSERSLIQTIGRAARNA-RGEVWLYADRV 550 (664)
T ss_dssp TSCSGGGSHHHHHHHHGGGTTST-TCEEEEECSSC
T ss_pred cccCCCCCHHHHHHHHCccCcCC-CCEEEEEEcCC
Confidence 899999999999999995 89999999876
No 77
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=99.96 E-value=3.2e-27 Score=262.94 Aligned_cols=167 Identities=22% Similarity=0.249 Sum_probs=126.6
Q ss_pred hcceeEEEecccchHHHHHHHHhcCCCeEEEecCCCCcccceEEEeeehhhHHHHHHHHHHhhcCCCCEEEEeCccccHH
Q 007814 329 AQRQTLLFSATMPTKIQNFARSALVKPVTVNVGRAGAANLDVIQEVEYVKQEAKIVYLLECLQKTPPPVLIFCENKADVD 408 (588)
Q Consensus 329 ~~~q~l~~SAT~~~~i~~~~~~~l~~p~~i~~~~~~~~~~~~~~~~~~~~~~~k~~~ll~~l~~~~~~viIF~~s~~~~~ 408 (588)
..+|+++||||+++..... ....+...+...+.... .............+...+....+.+.++||||+|+..++
T Consensus 385 ~~~q~i~~SAT~~~~~~~~----~~~~~~~~~r~~~l~~p-~i~v~~~~~~~~~Ll~~l~~~~~~~~~vlVf~~t~~~ae 459 (661)
T 2d7d_A 385 HMHNIVYVSATPGPYEIEH----TDEMVEQIIRPTGLLDP-LIDVRPIEGQIDDLIGEIQARIERNERVLVTTLTKKMSE 459 (661)
T ss_dssp TCSEEEEECSSCCHHHHHH----CSSCEEECCCTTCCCCC-EEEEECSTTHHHHHHHHHHHHHTTTCEEEEECSSHHHHH
T ss_pred cCCCEEEEecCCChhHHHh----hhCeeeeeecccCCCCC-eEEEecccchHHHHHHHHHHHHhcCCeEEEEECCHHHHH
Confidence 4678999999998654222 11112221111111111 111111112222222222222345679999999999999
Q ss_pred HHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhcCCcEEEEEcCccccCCCCCCcceEEecCC-----CCChhHHHHHhc
Q 007814 409 DIHEYLLLKGVEAVAVHGGKDQEEREYAISSFKAGKKDVLVATDVASKGLDFPDIQHVINYDM-----PAEIENYVHRIG 483 (588)
Q Consensus 409 ~l~~~L~~~g~~~~~ihg~~~~~~R~~~~~~f~~g~~~vLVaT~~~~~GlDip~v~~VI~~~~-----p~s~~~y~qriG 483 (588)
.+++.|...|+.+..+||++++.+|..+++.|++|+.+|||||+++++|+|+|++++||+++. |.+..+|+||+|
T Consensus 460 ~L~~~L~~~gi~~~~lh~~~~~~~R~~~l~~f~~g~~~VLVaT~~l~~GlDip~v~lVi~~d~d~~G~p~s~~~~iQr~G 539 (661)
T 2d7d_A 460 DLTDYLKEIGIKVNYLHSEIKTLERIEIIRDLRLGKYDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIG 539 (661)
T ss_dssp HHHHHHHHTTCCEEEECTTCCHHHHHHHHHHHHHTSCSEEEESCCCSTTCCCTTEEEEEETTTTCCTTTTSHHHHHHHHH
T ss_pred HHHHHHHhcCCCeEEEeCCCCHHHHHHHHHHHhcCCeEEEEecchhhCCcccCCCCEEEEeCcccccCCCCHHHHHHHhC
Confidence 999999999999999999999999999999999999999999999999999999999999997 999999999999
Q ss_pred ccccCCCccEEEEEecCC
Q 007814 484 RTGRCGKTGIATTFINKN 501 (588)
Q Consensus 484 RagR~g~~g~~~~~~~~~ 501 (588)
||||. ..|.+++|+++.
T Consensus 540 RagR~-~~G~~i~~~~~~ 556 (661)
T 2d7d_A 540 RAARN-AEGRVIMYADKI 556 (661)
T ss_dssp TTTTS-TTCEEEEECSSC
T ss_pred cccCC-CCCEEEEEEeCC
Confidence 99998 789999999887
No 78
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens}
Probab=99.95 E-value=4e-28 Score=227.57 Aligned_cols=165 Identities=41% Similarity=0.727 Sum_probs=139.7
Q ss_pred CcccceEEEeeehhhHHHHHHHHHHhhcC--CCCEEEEeCccccHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhc
Q 007814 365 AANLDVIQEVEYVKQEAKIVYLLECLQKT--PPPVLIFCENKADVDDIHEYLLLKGVEAVAVHGGKDQEEREYAISSFKA 442 (588)
Q Consensus 365 ~~~~~~~~~~~~~~~~~k~~~ll~~l~~~--~~~viIF~~s~~~~~~l~~~L~~~g~~~~~ihg~~~~~~R~~~~~~f~~ 442 (588)
..+.++.|.+..+....|+..|.+.+... +.++||||+++..++.+++.|...|+.+..+||++++.+|..+++.|++
T Consensus 15 ~~~~~i~q~~~~v~~~~K~~~L~~ll~~~~~~~k~lVF~~~~~~~~~l~~~L~~~g~~~~~lhg~~~~~~r~~~~~~f~~ 94 (185)
T 2jgn_A 15 STSENITQKVVWVEESDKRSFLLDLLNATGKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRS 94 (185)
T ss_dssp -CCTTEEEEEEECCGGGHHHHHHHHHHHC-CCSCEEEEESCHHHHHHHHHHHHHTTCCEEEEC--------CHHHHHHHH
T ss_pred CCCCCceEEEEEeCcHHHHHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHHcCCceEEEeCCCCHHHHHHHHHHHHc
Confidence 45678889988888888988888888764 5789999999999999999999999999999999999999999999999
Q ss_pred CCcEEEEEcCccccCCCCCCcceEEecCCCCChhHHHHHhcccccCCCccEEEEEecCCCChhHHHHHHHHHHHhcccCc
Q 007814 443 GKKDVLVATDVASKGLDFPDIQHVINYDMPAEIENYVHRIGRTGRCGKTGIATTFINKNQSETTLLDLKHLLQEAKQRIP 522 (588)
Q Consensus 443 g~~~vLVaT~~~~~GlDip~v~~VI~~~~p~s~~~y~qriGRagR~g~~g~~~~~~~~~~~~~~~~~l~~~l~~~~~~~p 522 (588)
|+.+|||||+++++|+|+|++++||+||+|+++..|+||+||+||.|+.|.+++|+++. +...+..+.+.+....+.+|
T Consensus 95 g~~~vLvaT~~~~~Gldi~~~~~VI~~d~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~-~~~~~~~l~~~l~~~~~~~~ 173 (185)
T 2jgn_A 95 GKSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNER-NINITKDLLDLLVEAKQEVP 173 (185)
T ss_dssp TSSSEEEEEC------CCCSBSEEEESSCCSSHHHHHHHHTTBCCTTSCEEEEEEECGG-GGGGHHHHHHHHHHTTCCCC
T ss_pred CCCeEEEEcChhhcCCCcccCCEEEEeCCCCCHHHHHHHccccCCCCCCcEEEEEEchh-hHHHHHHHHHHHHhccCCCC
Confidence 99999999999999999999999999999999999999999999999999999999987 67788999999999999999
Q ss_pred hHHhhccC
Q 007814 523 PVLAELND 530 (588)
Q Consensus 523 ~~l~~l~~ 530 (588)
.++.++..
T Consensus 174 ~~l~~~a~ 181 (185)
T 2jgn_A 174 SWLENMAY 181 (185)
T ss_dssp HHHHHHHC
T ss_pred HHHHHHHH
Confidence 99988764
No 79
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis}
Probab=99.94 E-value=1.4e-26 Score=212.61 Aligned_cols=148 Identities=38% Similarity=0.612 Sum_probs=132.9
Q ss_pred CcccceEEEeeehhhHHHHHHHHHHhhc-CCCCEEEEeCccccHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhcC
Q 007814 365 AANLDVIQEVEYVKQEAKIVYLLECLQK-TPPPVLIFCENKADVDDIHEYLLLKGVEAVAVHGGKDQEEREYAISSFKAG 443 (588)
Q Consensus 365 ~~~~~~~~~~~~~~~~~k~~~ll~~l~~-~~~~viIF~~s~~~~~~l~~~L~~~g~~~~~ihg~~~~~~R~~~~~~f~~g 443 (588)
....++.+.+..+....|+..|...+.. .+.++||||+++..++.+++.|...|+.+..+||+|++.+|..+++.|++|
T Consensus 5 ~~~~~i~~~~~~~~~~~K~~~L~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~hg~~~~~~r~~~~~~f~~g 84 (163)
T 2hjv_A 5 LTTRNIEHAVIQVREENKFSLLKDVLMTENPDSCIIFCRTKEHVNQLTDELDDLGYPCDKIHGGMIQEDRFDVMNEFKRG 84 (163)
T ss_dssp -CCCCEEEEEEECCGGGHHHHHHHHHHHHCCSSEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTT
T ss_pred cCcccceEEEEECChHHHHHHHHHHHHhcCCCcEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHHcC
Confidence 3456688888888888888888887765 456999999999999999999999999999999999999999999999999
Q ss_pred CcEEEEEcCccccCCCCCCcceEEecCCCCChhHHHHHhcccccCCCccEEEEEecCCCChhHHHHHHHH
Q 007814 444 KKDVLVATDVASKGLDFPDIQHVINYDMPAEIENYVHRIGRTGRCGKTGIATTFINKNQSETTLLDLKHL 513 (588)
Q Consensus 444 ~~~vLVaT~~~~~GlDip~v~~VI~~~~p~s~~~y~qriGRagR~g~~g~~~~~~~~~~~~~~~~~l~~~ 513 (588)
+.+|||||+++++|+|+|++++||+||+|+++..|+||+||+||.|+.|.+++|+++. +...+..+.+.
T Consensus 85 ~~~vlv~T~~~~~Gld~~~~~~Vi~~~~p~~~~~~~qr~GR~~R~g~~g~~~~~~~~~-~~~~~~~i~~~ 153 (163)
T 2hjv_A 85 EYRYLVATDVAARGIDIENISLVINYDLPLEKESYVHRTGRTGRAGNKGKAISFVTAF-EKRFLADIEEY 153 (163)
T ss_dssp SCSEEEECGGGTTTCCCSCCSEEEESSCCSSHHHHHHHTTTSSCTTCCEEEEEEECGG-GHHHHHHHHHH
T ss_pred CCeEEEECChhhcCCchhcCCEEEEeCCCCCHHHHHHhccccCcCCCCceEEEEecHH-HHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999877 45555555443
No 80
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19
Probab=99.94 E-value=4.6e-27 Score=217.77 Aligned_cols=157 Identities=28% Similarity=0.460 Sum_probs=136.2
Q ss_pred cceEEEeeehhhHHHHHHHHHHhhcC-CCCEEEEeCccccHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhcCCcE
Q 007814 368 LDVIQEVEYVKQEAKIVYLLECLQKT-PPPVLIFCENKADVDDIHEYLLLKGVEAVAVHGGKDQEEREYAISSFKAGKKD 446 (588)
Q Consensus 368 ~~~~~~~~~~~~~~k~~~ll~~l~~~-~~~viIF~~s~~~~~~l~~~L~~~g~~~~~ihg~~~~~~R~~~~~~f~~g~~~ 446 (588)
..+.|.+..+....|+..+...+... ..++||||+++..++.+++.|...|+.+..+||+|++.+|..+++.|++|+.+
T Consensus 4 ~~i~q~~~~~~~~~K~~~L~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~hg~~~~~~r~~~~~~f~~g~~~ 83 (172)
T 1t5i_A 4 HGLQQYYVKLKDNEKNRKLFDLLDVLEFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRR 83 (172)
T ss_dssp -CCEEEEEECCGGGHHHHHHHHHHHSCCSSEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSCS
T ss_pred CCeEEEEEECChHHHHHHHHHHHHhCCCCcEEEEECCHHHHHHHHHHHHhcCCCEEEEECCCCHHHHHHHHHHHHCCCCc
Confidence 45677777788888888888887664 56899999999999999999999999999999999999999999999999999
Q ss_pred EEEEcCccccCCCCCCcceEEecCCCCChhHHHHHhcccccCCCccEEEEEecCCCChhHHHHHHHHHHHhcccCchH
Q 007814 447 VLVATDVASKGLDFPDIQHVINYDMPAEIENYVHRIGRTGRCGKTGIATTFINKNQSETTLLDLKHLLQEAKQRIPPV 524 (588)
Q Consensus 447 vLVaT~~~~~GlDip~v~~VI~~~~p~s~~~y~qriGRagR~g~~g~~~~~~~~~~~~~~~~~l~~~l~~~~~~~p~~ 524 (588)
|||||+++++|+|+|++++||+||+|+++..|+||+||+||.|+.|.+++|+++.++...+..+.+.+......+|..
T Consensus 84 vLvaT~~~~~Gldi~~~~~Vi~~d~p~~~~~~~qr~GR~~R~g~~g~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 161 (172)
T 1t5i_A 84 ILVATNLFGRGMDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNDVQDRFEVNISELPDE 161 (172)
T ss_dssp EEEESSCCSTTCCGGGCSEEEESSCCSSHHHHHHHHHHHTGGGCCCEEEEEECSHHHHHHHHHHHHHHCCCEEECC--
T ss_pred EEEECCchhcCcchhhCCEEEEECCCCCHHHHHHHhcccccCCCCcEEEEEEcChhHHHHHHHHHHHHhcchhhCChh
Confidence 999999999999999999999999999999999999999999999999999987644455666665554444445544
No 81
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19
Probab=99.94 E-value=1.8e-26 Score=212.40 Aligned_cols=155 Identities=28% Similarity=0.554 Sum_probs=129.2
Q ss_pred ceEEEeeehhhHH-HHHHHHHHhhc-CCCCEEEEeCccccHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhcCCcE
Q 007814 369 DVIQEVEYVKQEA-KIVYLLECLQK-TPPPVLIFCENKADVDDIHEYLLLKGVEAVAVHGGKDQEEREYAISSFKAGKKD 446 (588)
Q Consensus 369 ~~~~~~~~~~~~~-k~~~ll~~l~~-~~~~viIF~~s~~~~~~l~~~L~~~g~~~~~ihg~~~~~~R~~~~~~f~~g~~~ 446 (588)
++.|.+..+..+. |+..+...+.. .++++||||+++..++.++..|...|+.+..+||++++.+|..+++.|++|+.+
T Consensus 3 ~i~~~~~~~~~~~~K~~~l~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ 82 (165)
T 1fuk_A 3 GIKQFYVNVEEEEYKYECLTDLYDSISVTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIMKEFRSGSSR 82 (165)
T ss_dssp -CEEEEEEEESGGGHHHHHHHHHHHTTCSCEEEEESSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSCS
T ss_pred CcEEEEEECCcchhHHHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHHcCCCE
Confidence 3556666666555 87777777765 457899999999999999999999999999999999999999999999999999
Q ss_pred EEEEcCccccCCCCCCcceEEecCCCCChhHHHHHhcccccCCCccEEEEEecCCCChhHHHHHHHHHHHhcccCchH
Q 007814 447 VLVATDVASKGLDFPDIQHVINYDMPAEIENYVHRIGRTGRCGKTGIATTFINKNQSETTLLDLKHLLQEAKQRIPPV 524 (588)
Q Consensus 447 vLVaT~~~~~GlDip~v~~VI~~~~p~s~~~y~qriGRagR~g~~g~~~~~~~~~~~~~~~~~l~~~l~~~~~~~p~~ 524 (588)
|||||+++++|+|+|++++||+||+|+++..|+||+||+||.|+.|.+++|+++. +...+..+.+++....+.+|..
T Consensus 83 vlv~T~~~~~G~d~~~~~~Vi~~~~p~~~~~~~qr~GR~gR~g~~g~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 159 (165)
T 1fuk_A 83 ILISTDLLARGIDVQQVSLVINYDLPANKENYIHRIGRGGRFGRKGVAINFVTNE-DVGAMRELEKFYSTQIEELPSD 159 (165)
T ss_dssp EEEEEGGGTTTCCCCSCSEEEESSCCSSGGGGGGSSCSCC-----CEEEEEEETT-THHHHHHHHHHSSCCCEECCSC
T ss_pred EEEEcChhhcCCCcccCCEEEEeCCCCCHHHHHHHhcccccCCCCceEEEEEcch-HHHHHHHHHHHHccCccccCcc
Confidence 9999999999999999999999999999999999999999999999999999987 5556666666655444555544
No 82
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens}
Probab=99.93 E-value=8.4e-26 Score=210.05 Aligned_cols=147 Identities=27% Similarity=0.509 Sum_probs=125.8
Q ss_pred ccceEEEeeehhhHH-HHHHHHHHhhcC-CCCEEEEeCccccHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhcCC
Q 007814 367 NLDVIQEVEYVKQEA-KIVYLLECLQKT-PPPVLIFCENKADVDDIHEYLLLKGVEAVAVHGGKDQEEREYAISSFKAGK 444 (588)
Q Consensus 367 ~~~~~~~~~~~~~~~-k~~~ll~~l~~~-~~~viIF~~s~~~~~~l~~~L~~~g~~~~~ihg~~~~~~R~~~~~~f~~g~ 444 (588)
..++.|.+..+.... |+..+...+... .+++||||+++..++.++..|...|+.+..+||++++.+|..+++.|++|+
T Consensus 5 ~~~i~q~~~~~~~~~~K~~~L~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~R~~~~~~f~~g~ 84 (175)
T 2rb4_A 5 LNNIRQYYVLCEHRKDKYQALCNIYGSITIGQAIIFCQTRRNAKWLTVEMIQDGHQVSLLSGELTVEQRASIIQRFRDGK 84 (175)
T ss_dssp BCCEEEEEEECSSHHHHHHHHHHHHTTSCCSEEEEECSCHHHHHHHHHHHHTTTCCEEEECSSCCHHHHHHHHHHHHTTS
T ss_pred cCCceEEEEEcCChHhHHHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHHcCC
Confidence 456777777776544 888888887764 568999999999999999999999999999999999999999999999999
Q ss_pred cEEEEEcCccccCCCCCCcceEEecCCC------CChhHHHHHhcccccCCCccEEEEEecCCCChhHHHHHHHHH
Q 007814 445 KDVLVATDVASKGLDFPDIQHVINYDMP------AEIENYVHRIGRTGRCGKTGIATTFINKNQSETTLLDLKHLL 514 (588)
Q Consensus 445 ~~vLVaT~~~~~GlDip~v~~VI~~~~p------~s~~~y~qriGRagR~g~~g~~~~~~~~~~~~~~~~~l~~~l 514 (588)
.+|||||+++++|+|+|++++||+||+| .+..+|+||+||+||.|+.|.+++|+++. +...+..+.+.+
T Consensus 85 ~~vLvaT~~~~~Gid~~~~~~Vi~~d~p~~~~~~~~~~~~~qr~GR~gR~g~~g~~~~~~~~~-~~~~~~~i~~~~ 159 (175)
T 2rb4_A 85 EKVLITTNVCARGIDVKQVTIVVNFDLPVKQGEEPDYETYLHRIGRTGRFGKKGLAFNMIEVD-ELPSLMKIQDHF 159 (175)
T ss_dssp CSEEEECCSCCTTTCCTTEEEEEESSCCC--CCSCCHHHHHHHHCBC----CCEEEEEEECGG-GHHHHHHHHHHH
T ss_pred CeEEEEecchhcCCCcccCCEEEEeCCCCCccccCCHHHHHHHhcccccCCCCceEEEEEccc-hHHHHHHHHHHh
Confidence 9999999999999999999999999999 89999999999999999999999999877 344444444433
No 83
>3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A
Probab=99.92 E-value=3.9e-25 Score=211.93 Aligned_cols=141 Identities=33% Similarity=0.555 Sum_probs=122.9
Q ss_pred eeehhhHHHHHHHHHHhhc-CCCCEEEEeCccccHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhcCCcEEEEEcC
Q 007814 374 VEYVKQEAKIVYLLECLQK-TPPPVLIFCENKADVDDIHEYLLLKGVEAVAVHGGKDQEEREYAISSFKAGKKDVLVATD 452 (588)
Q Consensus 374 ~~~~~~~~k~~~ll~~l~~-~~~~viIF~~s~~~~~~l~~~L~~~g~~~~~ihg~~~~~~R~~~~~~f~~g~~~vLVaT~ 452 (588)
........|+..+...+.. .++++||||+++..++.+++.|...|+.+..+||++++.+|..+++.|++|+.+|||||+
T Consensus 10 ~~~~~~~~k~~~l~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vlvaT~ 89 (212)
T 3eaq_A 10 AVPAPVRGRLEVLSDLLYVASPDRAMVFTRTKAETEEIAQGLLRLGHPAQALHGDLSQGERERVLGAFRQGEVRVLVATD 89 (212)
T ss_dssp EEECCTTSHHHHHHHHHHHHCCSCEEEECSSHHHHHHHHHHHHHHTCCEEEECSSSCHHHHHHHHHHHHSSSCCEEEECT
T ss_pred EEeCCHHHHHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHHCCCCeEEEecC
Confidence 3344556677777776654 567999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCCCCCcceEEecCCCCChhHHHHHhcccccCCCccEEEEEecCCCChhHHHHHHHHHH
Q 007814 453 VASKGLDFPDIQHVINYDMPAEIENYVHRIGRTGRCGKTGIATTFINKNQSETTLLDLKHLLQ 515 (588)
Q Consensus 453 ~~~~GlDip~v~~VI~~~~p~s~~~y~qriGRagR~g~~g~~~~~~~~~~~~~~~~~l~~~l~ 515 (588)
++++|+|+|++++||+||+|+++..|+||+|||||.|+.|.+++|+++. +...+..+.+.+.
T Consensus 90 ~~~~Gidi~~v~~Vi~~~~p~~~~~~~qr~GR~gR~g~~g~~~~l~~~~-~~~~~~~i~~~~~ 151 (212)
T 3eaq_A 90 VAARGLDIPQVDLVVHYRLPDRAEAYQHRSGRTGRAGRGGRVVLLYGPR-ERRDVEALERAVG 151 (212)
T ss_dssp TTTCSSSCCCBSEEEESSCCSSHHHHHHHHTTBCCCC--BEEEEEECGG-GHHHHHHHHHHHS
T ss_pred hhhcCCCCccCcEEEECCCCcCHHHHHHHhcccCCCCCCCeEEEEEchh-HHHHHHHHHHHhc
Confidence 9999999999999999999999999999999999999999999999887 4555555555443
No 84
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=99.91 E-value=2.2e-24 Score=207.01 Aligned_cols=166 Identities=20% Similarity=0.220 Sum_probs=122.6
Q ss_pred CCCCCcHHHHHHHHHHhcCCCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEEEEEcCCHHHHHH-HHHHHH
Q 007814 162 GIVQPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFCLIVCPSRELARQ-TYEVVE 240 (588)
Q Consensus 162 g~~~p~~~Q~~~i~~il~g~dvii~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Q-~~~~~~ 240 (588)
....|+++|.++++.++.++++++.+|||+|||++++++++..+..... ...++++||++|+++|+.| +.+.+.
T Consensus 30 ~~~~l~~~Q~~~i~~~~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~-----~~~~~~~lil~p~~~L~~q~~~~~~~ 104 (216)
T 3b6e_A 30 PELQLRPYQMEVAQPALEGKNIIICLPTGSGKTRVAVYIAKDHLDKKKK-----ASEPGKVIVLVNKVLLVEQLFRKEFQ 104 (216)
T ss_dssp CCCCCCHHHHHHHHHHHTTCCEEEECSCHHHHHHHHHHHHHHHHHHHHH-----TTCCCCEEEEESSHHHHHHHHHHTHH
T ss_pred CCCCchHHHHHHHHHHhcCCCEEEEcCCCCCHHHHHHHHHHHHHhhccc-----ccCCCcEEEEECHHHHHHHHHHHHHH
Confidence 4568999999999999999999999999999999999999877654321 1246789999999999999 778888
Q ss_pred HHhhcccccCCCCceEEEEEcCcchHHHHHHHhcCCcEEEeChHHHHHHHHccc------CCCCCcceeEecCccccccc
Q 007814 241 QFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKK------MNLDNCRYLTLDEADRLVDL 314 (588)
Q Consensus 241 ~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~L~~~l~~~~------~~l~~~~~lViDEah~l~~~ 314 (588)
.+... ++++..++|+.........+..+++|+|+||++|...+.... ..+..+++|||||||++.+.
T Consensus 105 ~~~~~-------~~~v~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~~~~~~iIiDEah~~~~~ 177 (216)
T 3b6e_A 105 PFLKK-------WYRVIGLSGDTQLKISFPEVVKSCDIIISTAQILENSLLNLENGEDAGVQLSDFSLIIIDECHHTNKE 177 (216)
T ss_dssp HHHTT-------TSCEEECCC---CCCCHHHHHHHCSEEEEEHHHHHHHHHC-------CCCGGGCSEEEETTC------
T ss_pred HHhcc-------CceEEEEeCCcccchhHHhhccCCCEEEECHHHHHHHHhccCcccccccchhcccEEEEECchhhccC
Confidence 88642 578888888876665555555678999999999998887643 56788999999999999887
Q ss_pred CcHHHHHHHH-Hh-hh------------hcceeEEEecc
Q 007814 315 GFEDDIREVF-DH-FK------------AQRQTLLFSAT 339 (588)
Q Consensus 315 ~~~~~i~~i~-~~-~~------------~~~q~l~~SAT 339 (588)
++...+...+ .. +. +..++|+||||
T Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lSAT 216 (216)
T 3b6e_A 178 AVYNNIMRHYLMQKLKNNRLKKENKPVIPLPQILGLTAS 216 (216)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHTTCCCCCCCEEEEEECC
T ss_pred CcHHHHHHHHHHHhcccccccccccCCCCcceEEEeecC
Confidence 6655543222 21 11 45789999998
No 85
>3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus}
Probab=99.91 E-value=2.9e-24 Score=215.79 Aligned_cols=144 Identities=34% Similarity=0.553 Sum_probs=122.0
Q ss_pred eEEEeeehhhHHHHHHHHHHhhc-CCCCEEEEeCccccHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhcCCcEEE
Q 007814 370 VIQEVEYVKQEAKIVYLLECLQK-TPPPVLIFCENKADVDDIHEYLLLKGVEAVAVHGGKDQEEREYAISSFKAGKKDVL 448 (588)
Q Consensus 370 ~~~~~~~~~~~~k~~~ll~~l~~-~~~~viIF~~s~~~~~~l~~~L~~~g~~~~~ihg~~~~~~R~~~~~~f~~g~~~vL 448 (588)
+.+.+..+....|+..+...+.. .+.++||||+++..++.+++.|...|+.+..+||+|++.+|..+++.|++|+.+||
T Consensus 3 v~~~~i~~~~~~K~~~L~~ll~~~~~~~~LVF~~t~~~~~~l~~~L~~~g~~~~~lhg~l~~~~r~~~~~~f~~g~~~vL 82 (300)
T 3i32_A 3 YEEEAVPAPVRGRLEVLSDLLYVASPDRAMVFTRTKAETEEIAQGLLRLGHPAQALHGDMSQGERERVMGAFRQGEVRVL 82 (300)
T ss_dssp SEEEEEECCSSSHHHHHHHHHHHHCCSSEEEECSSHHHHHHHHHHHHTTTCCEEEECSCCCTHHHHHHHHHHHHTSCCEE
T ss_pred eEEEEEECCHHHHHHHHHHHHHhcCCCCEEEEECCHHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHhhcCCceEE
Confidence 34555556666777777777654 47899999999999999999999999999999999999999999999999999999
Q ss_pred EEcCccccCCCCCCcceEEecCCCCChhHHHHHhcccccCCCccEEEEEecCCCChhHHHHHHHHH
Q 007814 449 VATDVASKGLDFPDIQHVINYDMPAEIENYVHRIGRTGRCGKTGIATTFINKNQSETTLLDLKHLL 514 (588)
Q Consensus 449 VaT~~~~~GlDip~v~~VI~~~~p~s~~~y~qriGRagR~g~~g~~~~~~~~~~~~~~~~~l~~~l 514 (588)
|||+++++|+|+|++++||+||+|++...|+||+|||||.|+.|.+++|+++. +...+..+.+.+
T Consensus 83 VaT~va~~Gidi~~v~~VI~~d~p~s~~~y~Qr~GRagR~g~~G~~i~l~~~~-e~~~~~~ie~~~ 147 (300)
T 3i32_A 83 VATDVAARGLDIPQVDLVVHYRMPDRAEAYQHRSGRTGRAGRGGRVVLLYGPR-ERRDVEALERAV 147 (300)
T ss_dssp EECSTTTCSTTCCCCSEEEESSCCSSTTHHHHHHTCCC-----CEEEEEECSS-THHHHHHHHHHH
T ss_pred EEechhhcCccccceeEEEEcCCCCCHHHHHHHccCcCcCCCCceEEEEeChH-HHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999987 444444444443
No 86
>2vl7_A XPD; helicase, unknown function; 2.25A {Sulfolobus tokodaii}
Probab=99.90 E-value=4.4e-24 Score=233.03 Aligned_cols=303 Identities=17% Similarity=0.216 Sum_probs=170.3
Q ss_pred CCCCCCcHHHHHHHHH----HhcCCCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEEEEEcCCHHHHHHHH
Q 007814 161 KGIVQPTPIQVQGLPV----VLSGRDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFCLIVCPSRELARQTY 236 (588)
Q Consensus 161 ~g~~~p~~~Q~~~i~~----il~g~dvii~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Q~~ 236 (588)
.|| .|+|+|.+++.. +..|+++++.||||+|||++|++|++.. +++++|++||++|+.|+.
T Consensus 4 ~~~-~~r~~Q~~~~~~v~~~~~~~~~~~~~a~TGtGKT~~~l~~~~~~--------------~~~~~~~~~t~~l~~q~~ 68 (540)
T 2vl7_A 4 LKL-QLRQWQAEKLGEAINALKHGKTLLLNAKPGLGKTVFVEVLGMQL--------------KKKVLIFTRTHSQLDSIY 68 (540)
T ss_dssp ------CCHHHHHHHHHHHHHHTTCEEEEECCTTSCHHHHHHHHHHHH--------------TCEEEEEESCHHHHHHHH
T ss_pred CCC-CCCHHHHHHHHHHHHHHHcCCCEEEEcCCCCcHHHHHHHHHHhC--------------CCcEEEEcCCHHHHHHHH
Confidence 366 899999998754 4589999999999999999999998742 568999999999999999
Q ss_pred HHHHHHhhcccccCCCCceEEEEEcCcch--------------------------------HHHHH--------------
Q 007814 237 EVVEQFLTPMRDAGYPDLRTLLCIGGVDM--------------------------------RSQLE-------------- 270 (588)
Q Consensus 237 ~~~~~~~~~~~~~~~~~i~~~~~~gg~~~--------------------------------~~~~~-------------- 270 (588)
+.+..+ ++++..+.|.... .+.+.
T Consensus 69 ~~~~~l----------~~~~~~l~gr~~lC~~~~~~~~~~~~~c~~c~~~~~~~~~gd~~~~~~~~~~~~~~~~Cpy~~~ 138 (540)
T 2vl7_A 69 KNAKLL----------GLKTGFLIGKSASCIYAQGDEEPDEINCSKCRLKDKIKTIEDKEPSKLIEEFKDAVDYCPYYSL 138 (540)
T ss_dssp HHHGGG----------TCCEEEC---------------------------------------------------------
T ss_pred HHHHhc----------CCcEEEecCCccccCCchhcccccccCCCCCCchhcccccccCCcHHHHHHHhhhcCCChHHHH
Confidence 888774 2333333221100 00001
Q ss_pred -HHhcCCcEEEeChHHHHHHHHcccC-------CCCCcceeEecCcccccccC--c-----HHH----------------
Q 007814 271 -VVKRGVHIVVATPGRLKDMLAKKKM-------NLDNCRYLTLDEADRLVDLG--F-----EDD---------------- 319 (588)
Q Consensus 271 -~l~~~~~IvV~Tp~~L~~~l~~~~~-------~l~~~~~lViDEah~l~~~~--~-----~~~---------------- 319 (588)
....+++|||+|+..|.+....+.+ .+....++||||||.|.+.. | ...
T Consensus 139 r~~~~~adiVV~n~~~l~~~~~~~~~~~~~~~~~~~~~~~vIiDEAHnl~~a~~~~s~~ls~~~l~~~~~~l~~~~~~~~ 218 (540)
T 2vl7_A 139 RANLKDKDVIAMTYPYLFQKPIRNSVFCNKDDCLKLEDYLIVIDEAHNLLEADKWFTRKISRKMLERALKEIEIVERLNR 218 (540)
T ss_dssp CTTGGGCSEEEEETHHHHSHHHHHHHSCSSTTSCCGGGEEEEETTGGGGGGGGGGGCEEECHHHHHHHHHHHHHHHHTTC
T ss_pred HHHhhcCCEEEEChHHhcCHHHHHhhCcccccccCcCCCEEEEEccccHHHHHHHhccccCHHHHHHHHHHHHHHHhcch
Confidence 1123579999999999876554332 24567899999999984310 0 000
Q ss_pred ------------------------------------------HHHHH--------------------Hhh----------
Q 007814 320 ------------------------------------------IREVF--------------------DHF---------- 327 (588)
Q Consensus 320 ------------------------------------------i~~i~--------------------~~~---------- 327 (588)
+..++ ..+
T Consensus 219 ~~~~~l~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~ 298 (540)
T 2vl7_A 219 IDAKKVKDYINLLIDYMSKLIKDGRCHELSLMPLPDRETNGELIVVTRAYLNIDEGPVKKSSLKSLLKFVEMKGDLYNCN 298 (540)
T ss_dssp CCCHHHHHHHHHHHHHHHTSCCSSSEEEESCCCCCCHHHHHHHHHHHHHHHTTCCSSSCCCHHHHHHHHHHSCCEEEEET
T ss_pred hhHHHHHHHHHHHHHHHHHhhccccccchhhcccccHHHHHHHHHHHHHHHHhhccCccHHHHHHHHHHHHhCCCEEEEC
Confidence 00000 000
Q ss_pred ------hh--------cce----eEEEecccchHHHHHHHHhcCCCeEEEecCC-CCc----ccceEEEeeehhh--HHH
Q 007814 328 ------KA--------QRQ----TLLFSATMPTKIQNFARSALVKPVTVNVGRA-GAA----NLDVIQEVEYVKQ--EAK 382 (588)
Q Consensus 328 ------~~--------~~q----~l~~SAT~~~~i~~~~~~~l~~p~~i~~~~~-~~~----~~~~~~~~~~~~~--~~k 382 (588)
|. ... +|++|||+++.. .+...+ ....... +.. ...+...+.+-.. ...
T Consensus 299 ~~l~~~P~~~~~~l~~~~~~~~~~IltSATL~p~~-~~~~~f-----~~~~~~~~g~~~~~~~~~l~s~f~~r~~~~~~~ 372 (540)
T 2vl7_A 299 GSLVKVPSDVNQLIEDALNVKTFKVLMSGTLPESL-TLTNSY-----KIVVNESYGRGEYYYCPNVTSELRKRNSNIPIY 372 (540)
T ss_dssp TEEEEECSCHHHHHHHHTCCSSCEEEEESSCCTTC-CCTTEE-----EEECCCC-CCCEEEECTTCCCCGGGHHHHHHHH
T ss_pred CeEEEehHHHHHHHHHhcCccCCeEEEcccCCCCc-ccchhc-----CCchhheecCCcceeccccCCCcccccCHHHHH
Confidence 00 012 377788877610 000001 0000000 000 0001001111110 112
Q ss_pred HHHHHHHhhcCCCCEEEEeCccccHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhcCCcEEEE--EcCccccCCCC
Q 007814 383 IVYLLECLQKTPPPVLIFCENKADVDDIHEYLLLKGVEAVAVHGGKDQEEREYAISSFKAGKKDVLV--ATDVASKGLDF 460 (588)
Q Consensus 383 ~~~ll~~l~~~~~~viIF~~s~~~~~~l~~~L~~~g~~~~~ihg~~~~~~R~~~~~~f~~g~~~vLV--aT~~~~~GlDi 460 (588)
...+...+...++.+|||++|+..++.+++.|.. +. ..++|.. .+|..+++.|+++. .||+ +|+.+++|||+
T Consensus 373 ~~~l~~~~~~~~g~~lvff~S~~~~~~v~~~l~~--~~-~~~q~~~--~~~~~~l~~f~~~~-~il~~V~~~~~~EGiD~ 446 (540)
T 2vl7_A 373 SILLKRIYENSSKSVLVFFPSYEMLESVRIHLSG--IP-VIEENKK--TRHEEVLELMKTGK-YLVMLVMRAKESEGVEF 446 (540)
T ss_dssp HHHHHHHHHTCSSEEEEEESCHHHHHHHHTTCTT--SC-EEESTTT--CCHHHHHHHHHTSC-CEEEEEC----------
T ss_pred HHHHHHHHHhCCCCEEEEeCCHHHHHHHHHHhcc--Cc-eEecCCC--CcHHHHHHHHhcCC-eEEEEEecCceecceec
Confidence 2233444455677899999999999999988854 33 4556654 46888999999865 5666 88999999999
Q ss_pred CC----cceEEecCCCCC-h-----------------------------hHHHHHhcccccCCCccEEEEEecC
Q 007814 461 PD----IQHVINYDMPAE-I-----------------------------ENYVHRIGRTGRCGKTGIATTFINK 500 (588)
Q Consensus 461 p~----v~~VI~~~~p~s-~-----------------------------~~y~qriGRagR~g~~g~~~~~~~~ 500 (588)
|+ +++||++++|.. + ..+.|.+||+-|....--+++++++
T Consensus 447 ~~~~~~~~~Vii~~lPf~~~~d~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Q~~GR~iR~~~D~g~v~llD~ 520 (540)
T 2vl7_A 447 REKENLFESLVLAGLPYPNVSDDMVRKRIERLSKLTGKDEDSIIHDLTAIVIKQTIGRAFRDPNDYVKIYLCDS 520 (540)
T ss_dssp -----CEEEEEEESCCCCCTTSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHCCSTTCCCEEEEESG
T ss_pred CCCcccccEEEEECCCCCCCCCHHHHHHHHHHHHhhCCChhHHHHHHHHHHHHHHhCCcccCCCccEEEEEEcc
Confidence 98 899999999942 1 1245889999998544334555544
No 87
>2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity A; hydrolase inhibitor-hydrolase complex, DEAD box RNA helicase; 2.90A {Escherichia coli}
Probab=99.84 E-value=1.2e-25 Score=207.95 Aligned_cols=144 Identities=31% Similarity=0.561 Sum_probs=125.7
Q ss_pred eEEEeeehhh-HHHHHHHHHHhhc-CCCCEEEEeCccccHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhcCCcEE
Q 007814 370 VIQEVEYVKQ-EAKIVYLLECLQK-TPPPVLIFCENKADVDDIHEYLLLKGVEAVAVHGGKDQEEREYAISSFKAGKKDV 447 (588)
Q Consensus 370 ~~~~~~~~~~-~~k~~~ll~~l~~-~~~~viIF~~s~~~~~~l~~~L~~~g~~~~~ihg~~~~~~R~~~~~~f~~g~~~v 447 (588)
+.+.+..+.. ..|+..+...+.. .+.++||||+++..++.+++.|...|+.+..+||++++.+|..+++.|++|+.+|
T Consensus 4 i~~~~~~~~~~~~k~~~l~~ll~~~~~~~~iVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~r~~~~~~f~~g~~~v 83 (170)
T 2yjt_D 4 IHQWYYRADDLEHKTALLVHLLKQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVNV 83 (170)
Confidence 4455555555 6677777776665 3568999999999999999999999999999999999999999999999999999
Q ss_pred EEEcCccccCCCCCCcceEEecCCCCChhHHHHHhcccccCCCccEEEEEecCCCChhHHHHHHHHH
Q 007814 448 LVATDVASKGLDFPDIQHVINYDMPAEIENYVHRIGRTGRCGKTGIATTFINKNQSETTLLDLKHLL 514 (588)
Q Consensus 448 LVaT~~~~~GlDip~v~~VI~~~~p~s~~~y~qriGRagR~g~~g~~~~~~~~~~~~~~~~~l~~~l 514 (588)
||||+++++|+|+|++++||+||+|+++..|+||+||+||.|+.|.+++|++.. +...+..+.+.+
T Consensus 84 LvaT~~~~~Gid~~~~~~Vi~~~~p~~~~~~~qr~GR~~R~g~~g~~~~~~~~~-~~~~~~~~~~~~ 149 (170)
T 2yjt_D 84 LVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAH-DHLLLGKVGRYI 149 (170)
Confidence 999999999999999999999999999999999999999999999999999887 444555555443
No 88
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=99.88 E-value=8.1e-22 Score=192.14 Aligned_cols=182 Identities=17% Similarity=0.160 Sum_probs=132.0
Q ss_pred HHHHHHHHCCCCCCcHHHHHHHHHHhcCCCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEEEEEcCCHHHH
Q 007814 153 PILKKLKAKGIVQPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFCLIVCPSRELA 232 (588)
Q Consensus 153 ~l~~~l~~~g~~~p~~~Q~~~i~~il~g~dvii~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~Lil~Ptr~La 232 (588)
.+.+.+.......++++|.++++.+..|++++++||||||||.++.++++........ ..+..+++++|+++|+
T Consensus 49 ~~~~~~~~~~~~p~~~~q~~~i~~i~~g~~~~i~g~TGsGKTt~~~~~~~~~~~~~~~------~~~~~~l~~~p~~~la 122 (235)
T 3llm_A 49 DLQAILQERELLPVKKFESEILEAISQNSVVIIRGATGCGKTTQVPQFILDDFIQNDR------AAECNIVVTQPRRISA 122 (235)
T ss_dssp HHHHHHHHHHTSGGGGGHHHHHHHHHHCSEEEEECCTTSSHHHHHHHHHHHHHHHTTC------GGGCEEEEEESSHHHH
T ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhcCCEEEEEeCCCCCcHHhHHHHHhcchhhcCC------CCceEEEEeccchHHH
Confidence 3333344444456799999999999999999999999999999999998877655321 2345899999999999
Q ss_pred HHHHHHHHHHhhcccccCCCCceEEEEEcCcchHHHHHHHhcCCcEEEeChHHHHHHHHcccCCCCCcceeEecCcccc-
Q 007814 233 RQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMNLDNCRYLTLDEADRL- 311 (588)
Q Consensus 233 ~Q~~~~~~~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~L~~~l~~~~~~l~~~~~lViDEah~l- 311 (588)
.|+.+.+....... .+..+.......... ...+++|+|+||++|.+++.. .++++++||+||||++
T Consensus 123 ~q~~~~~~~~~~~~-----~~~~~g~~~~~~~~~-----~~~~~~Ivv~Tpg~l~~~l~~---~l~~~~~lVlDEah~~~ 189 (235)
T 3llm_A 123 VSVAERVAFERGEE-----PGKSCGYSVRFESIL-----PRPHASIMFCTVGVLLRKLEA---GIRGISHVIVDEIHERD 189 (235)
T ss_dssp HHHHHHHHHTTTCC-----TTSSEEEEETTEEEC-----CCSSSEEEEEEHHHHHHHHHH---CCTTCCEEEECCTTSCC
T ss_pred HHHHHHHHHHhccc-----cCceEEEeechhhcc-----CCCCCeEEEECHHHHHHHHHh---hhcCCcEEEEECCccCC
Confidence 99998887764321 133333322211110 013478999999999999876 4889999999999996
Q ss_pred cccCcH-HHHHHHHHhhhhcceeEEEecccchHHHHHHHHhcCCCe
Q 007814 312 VDLGFE-DDIREVFDHFKAQRQTLLFSATMPTKIQNFARSALVKPV 356 (588)
Q Consensus 312 ~~~~~~-~~i~~i~~~~~~~~q~l~~SAT~~~~i~~~~~~~l~~p~ 356 (588)
.+++|. ..++.++... +..|+++||||++... +.+.+...|+
T Consensus 190 ~~~~~~~~~l~~i~~~~-~~~~~il~SAT~~~~~--~~~~~~~~pv 232 (235)
T 3llm_A 190 INTDFLLVVLRDVVQAY-PEVRIVLMSATIDTSM--FCEYFFNCPI 232 (235)
T ss_dssp HHHHHHHHHHHHHHHHC-TTSEEEEEECSSCCHH--HHHHTTSCCC
T ss_pred cchHHHHHHHHHHHhhC-CCCeEEEEecCCCHHH--HHHHcCCCCE
Confidence 777776 3556666554 4789999999999875 5555544444
No 89
>3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer aging, hydrolase; HET: FLC; 2.00A {Sulfolobus acidocaldarius} PDB: 3crw_1*
Probab=99.87 E-value=3.1e-20 Score=203.40 Aligned_cols=306 Identities=15% Similarity=0.104 Sum_probs=195.6
Q ss_pred CCcHHHHHHHHHH----hcCCCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEEEEEcCCHHHHHHHHHHHH
Q 007814 165 QPTPIQVQGLPVV----LSGRDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFCLIVCPSRELARQTYEVVE 240 (588)
Q Consensus 165 ~p~~~Q~~~i~~i----l~g~dvii~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Q~~~~~~ 240 (588)
.|+|+|.+.+..+ ..|+++++.||||+|||++|++|++. .+++++|++||++|+.|+.+.+.
T Consensus 3 ~~r~~Q~~~~~~v~~~l~~~~~~~~~a~TGtGKT~~~l~p~l~--------------~~~~v~i~~pt~~l~~q~~~~~~ 68 (551)
T 3crv_A 3 KLRDWQEKLKDKVIEGLRNNFLVALNAPTGSGKTLFSLLVSLE--------------VKPKVLFVVRTHNEFYPIYRDLT 68 (551)
T ss_dssp SCCHHHHHHHHHHHHHHHTTCEEEEECCTTSSHHHHHHHHHHH--------------HCSEEEEEESSGGGHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHHHcCCcEEEECCCCccHHHHHHHHHHh--------------CCCeEEEEcCCHHHHHHHHHHHH
Confidence 6999999977654 48999999999999999999999996 25789999999999999998888
Q ss_pred HHhhcccccCCCCceEEEEEcCcch---------------------------------HHHH------------------
Q 007814 241 QFLTPMRDAGYPDLRTLLCIGGVDM---------------------------------RSQL------------------ 269 (588)
Q Consensus 241 ~~~~~~~~~~~~~i~~~~~~gg~~~---------------------------------~~~~------------------ 269 (588)
.+.... ++++..+.|..+. ....
T Consensus 69 ~l~~~~------~~~~~~l~gr~~~c~~~~~~~~~~~~~c~~c~~~~~~~~~g~~~~~~~~~~~~~~~G~~~~~Cpy~~a 142 (551)
T 3crv_A 69 KIREKR------NITFSFLVGKPSSCLYAEKGAESEDIPCKYCELKGSIVEVKTDDSPLSLVKKLKKDGLQDKFCPYYSL 142 (551)
T ss_dssp TCCCSS------CCCEEECCCHHHHCTTBCTTCCGGGCCGGGCTTTTCCCCCCCCSCHHHHHHHHHHHHHHHTCCHHHHH
T ss_pred HHhhhc------CccEEEEccccccCcCchhcCCCcccccCCCCCccccccccccCCHHHHHHHHHHcCCcCCcCccHHH
Confidence 875433 6777777663221 1111
Q ss_pred HHHhcCCcEEEeChHHHHHHHHcccCCC-CCcceeEecCcccccccCc--------------------------------
Q 007814 270 EVVKRGVHIVVATPGRLKDMLAKKKMNL-DNCRYLTLDEADRLVDLGF-------------------------------- 316 (588)
Q Consensus 270 ~~l~~~~~IvV~Tp~~L~~~l~~~~~~l-~~~~~lViDEah~l~~~~~-------------------------------- 316 (588)
.....+++|||+||..|.+...+..+.+ ....+|||||||.|.+ ..
T Consensus 143 r~~~~~adIVV~~~~~l~~~~~~~~~~~~~~~~~vIiDEAHnl~d-~~~~~s~~ls~~~l~~~~~~l~~~~~~~~l~~l~ 221 (551)
T 3crv_A 143 LNSLYKADVIALTYPYFFIDRYREFIDIDLREYMIVIDEAHNLDK-VNELEERSLSEITIQMAIKQSKSEESRRILSKLL 221 (551)
T ss_dssp HHHGGGCSEEEEETHHHHCHHHHTTSCCCSTTEEEEETTGGGGGG-GGGGGCEEEEHHHHHHHHHHCSCHHHHHHHHHHH
T ss_pred HhhhhcCCEEEeCchHhcCHHHHHhcCCCcCCeEEEEecccchHH-HHHhhceecCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2223468999999999988765544433 3667899999999876 20
Q ss_pred -----------------------HHHHHHH----------------------------HH--------------------
Q 007814 317 -----------------------EDDIREV----------------------------FD-------------------- 325 (588)
Q Consensus 317 -----------------------~~~i~~i----------------------------~~-------------------- 325 (588)
...+..+ +.
T Consensus 222 ~~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~l~~~p 301 (551)
T 3crv_A 222 NQLREVVLPDEKYIKVENVPKLSKEELEILADDYEDIRKDSLKQGKVNKIHIGSILRFFSLLSIGSFIPFSYSKRLVIKN 301 (551)
T ss_dssp HHHTTSCCSCSSCEECSCCCCCCHHHHHHHHHHHHHHHHHHHHTTCBCCCHHHHHHHHHHHHHHSSCEEEEETTEEEEEC
T ss_pred HHHHHHhhccccccccccChHHHHHHHHHHHHHHHHHHHhhhhcCCcccchHHHHHHHHHHHhccCCeEeccCCEEEEEE
Confidence 0000000 00
Q ss_pred --------hhhhc-ceeEEEecccchHHHHHHHHhcCCC--eEE-----EecCCCCcccceEEEee-eh----h------
Q 007814 326 --------HFKAQ-RQTLLFSATMPTKIQNFARSALVKP--VTV-----NVGRAGAANLDVIQEVE-YV----K------ 378 (588)
Q Consensus 326 --------~~~~~-~q~l~~SAT~~~~i~~~~~~~l~~p--~~i-----~~~~~~~~~~~~~~~~~-~~----~------ 378 (588)
.+... +.+|++|||+.+ ...+.. .+.-+ ... .+...- ..+..-.+. .. .
T Consensus 302 l~~~~~l~~~~~~~~svIltSaTL~~-~~~~~~-~lGl~~~~~~~~~~~~~~spf--~~~~~l~v~~~~~~~~~~r~~~~ 377 (551)
T 3crv_A 302 PEISYYLNLLNDNELSIILMSGTLPP-REYMEK-VWGIKRNMLYLDVEREIQKRV--SGSYECYIGVDVTSKYDMRSDNM 377 (551)
T ss_dssp CCTHHHHGGGGCTTCEEEEEESSCCC-HHHHHH-TSCCCSCEEEEEHHHHTTSCC--SCEEEEEEECSCCCCTTTCCHHH
T ss_pred CCHHHHHHHHhccCceEEEEeeCCCc-HHHHHH-HhCCCCccccccceeecCCcC--CCceEEEEeCCCCCccccCCHHH
Confidence 01112 578999999987 333333 33322 210 111111 111100000 00 0
Q ss_pred hHHHHHHHHHHhhcCCCCEEEEeCccccHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhcCCcEEEEEc--Ccccc
Q 007814 379 QEAKIVYLLECLQKTPPPVLIFCENKADVDDIHEYLLLKGVEAVAVHGGKDQEEREYAISSFKAGKKDVLVAT--DVASK 456 (588)
Q Consensus 379 ~~~k~~~ll~~l~~~~~~viIF~~s~~~~~~l~~~L~~~g~~~~~ihg~~~~~~R~~~~~~f~~g~~~vLVaT--~~~~~ 456 (588)
...-...+...+...++.++||++|....+.+++. .+..+..=..+++ +...++.|+.....||+|| ..+++
T Consensus 378 ~~~l~~~i~~l~~~~~g~~lvlF~Sy~~l~~v~~~---~~~~v~~q~~~~~---~~~~~~~~~~~~~~vl~~v~gg~~~E 451 (551)
T 3crv_A 378 WKRYADYLLKIYFQAKANVLVVFPSYEIMDRVMSR---ISLPKYVESEDSS---VEDLYSAISANNKVLIGSVGKGKLAE 451 (551)
T ss_dssp HHHHHHHHHHHHHHCSSEEEEEESCHHHHHHHHTT---CCSSEEECCSSCC---HHHHHHHTTSSSSCEEEEESSCCSCC
T ss_pred HHHHHHHHHHHHHhCCCCEEEEecCHHHHHHHHHh---cCCcEEEcCCCCC---HHHHHHHHHhcCCeEEEEEecceecc
Confidence 01112233344455678999999999999999873 3444433333455 3457778864445799998 68999
Q ss_pred CCCCC-----CcceEEecCCCCC---h----------------h-----------HHHHHhcccccCCCccEEEEEecCC
Q 007814 457 GLDFP-----DIQHVINYDMPAE---I----------------E-----------NYVHRIGRTGRCGKTGIATTFINKN 501 (588)
Q Consensus 457 GlDip-----~v~~VI~~~~p~s---~----------------~-----------~y~qriGRagR~g~~g~~~~~~~~~ 501 (588)
|||+| .++.||..++|.. + . ...|.+||+-|.....-+++++++.
T Consensus 452 GiD~~d~~g~~l~~viI~~lPfp~~dp~~~ar~~~~~~~~g~~~~~~~y~~pa~~~l~Qa~GRlIR~~~D~G~v~llD~R 531 (551)
T 3crv_A 452 GIELRNNDRSLISDVVIVGIPYPPPDDYLKILAQRVSLKMNRENEEFLFKIPALVTIKQAIGRAIRDVNDKCNVWLLDKR 531 (551)
T ss_dssp SSCCEETTEESEEEEEEESCCCCCCSHHHHHHHHHTTCCSSTTTHHHHTHHHHHHHHHHHHHTTCCSTTCEEEEEEESGG
T ss_pred cccccccCCcceeEEEEEcCCCCCCCHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHhccCccCCCccEEEEEeehh
Confidence 99999 3788998888731 0 1 1248889999986555556666544
No 90
>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23
Probab=99.86 E-value=5.2e-22 Score=199.05 Aligned_cols=155 Identities=16% Similarity=0.093 Sum_probs=124.2
Q ss_pred CCCcHHHHHHHHHHhcCCCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEEEEEcCCHHHHHHHHHHHHHHh
Q 007814 164 VQPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFCLIVCPSRELARQTYEVVEQFL 243 (588)
Q Consensus 164 ~~p~~~Q~~~i~~il~g~dvii~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Q~~~~~~~~~ 243 (588)
..|+++|.++++.++.+++.++++|||+|||+++++++...+.. .+.++|||+||++|+.|+.+.+.+++
T Consensus 112 ~~l~~~Q~~ai~~~l~~~~~ll~~~tGsGKT~~~~~~~~~~~~~----------~~~~~lil~Pt~~L~~q~~~~l~~~~ 181 (282)
T 1rif_A 112 IEPHWYQKDAVFEGLVNRRRILNLPTSAGRSLIQALLARYYLEN----------YEGKILIIVPTTALTTQMADDFVDYR 181 (282)
T ss_dssp CCCCHHHHHHHHHHHHHSEEEECCCTTSCHHHHHHHHHHHHHHH----------CSSEEEEECSSHHHHHHHHHHHHHHT
T ss_pred cCccHHHHHHHHHHHhcCCeEEEcCCCCCcHHHHHHHHHHHHHc----------CCCeEEEEECCHHHHHHHHHHHHHhc
Confidence 37999999999999988899999999999999998887765533 23489999999999999999999985
Q ss_pred hcccccCCCCceEEEEEcCcchHHHHHHHhcCCcEEEeChHHHHHHHHcccCCCCCcceeEecCcccccccCcHHHHHHH
Q 007814 244 TPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMNLDNCRYLTLDEADRLVDLGFEDDIREV 323 (588)
Q Consensus 244 ~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~L~~~l~~~~~~l~~~~~lViDEah~l~~~~~~~~i~~i 323 (588)
.. +...+..+.||..... ....+.+|+|+||+.+... ....+..+++||+||||++.+ ..+..+
T Consensus 182 ~~------~~~~~~~~~~~~~~~~---~~~~~~~I~v~T~~~l~~~---~~~~~~~~~~vIiDEaH~~~~----~~~~~i 245 (282)
T 1rif_A 182 LF------SHAMIKKIGGGASKDD---KYKNDAPVVVGTWQTVVKQ---PKEWFSQFGMMMNDECHLATG----KSISSI 245 (282)
T ss_dssp SC------CGGGEEECSTTCSSTT---CCCTTCSEEEECHHHHTTS---CGGGGGGEEEEEEETGGGCCH----HHHHHH
T ss_pred cc------ccceEEEEeCCCcchh---hhccCCcEEEEchHHHHhh---HHHHHhhCCEEEEECCccCCc----ccHHHH
Confidence 42 2567777777765432 1124579999999877432 233467889999999999974 577888
Q ss_pred HHhhhhcceeEEEecccchHH
Q 007814 324 FDHFKAQRQTLLFSATMPTKI 344 (588)
Q Consensus 324 ~~~~~~~~q~l~~SAT~~~~i 344 (588)
+..+...+++++||||+++..
T Consensus 246 l~~~~~~~~~l~lSATp~~~~ 266 (282)
T 1rif_A 246 ISGLNNCMFKFGLSGSLRDGK 266 (282)
T ss_dssp TTTCTTCCEEEEECSSCCTTS
T ss_pred HHHhhcCCeEEEEeCCCCCcc
Confidence 888877899999999998654
No 91
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=99.80 E-value=4.7e-19 Score=172.56 Aligned_cols=139 Identities=22% Similarity=0.115 Sum_probs=110.6
Q ss_pred CCCcHHHHHHHHHHhcCCCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEEEEEcCCHHHHHHHHHHHHHHh
Q 007814 164 VQPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFCLIVCPSRELARQTYEVVEQFL 243 (588)
Q Consensus 164 ~~p~~~Q~~~i~~il~g~dvii~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Q~~~~~~~~~ 243 (588)
..|+++|.++++.++.++++++++|||+|||++++.++... +.++||++|+++|+.|+.+.+.++
T Consensus 92 ~~l~~~Q~~ai~~~~~~~~~ll~~~tG~GKT~~a~~~~~~~--------------~~~~liv~P~~~L~~q~~~~~~~~- 156 (237)
T 2fz4_A 92 ISLRDYQEKALERWLVDKRGCIVLPTGSGKTHVAMAAINEL--------------STPTLIVVPTLALAEQWKERLGIF- 156 (237)
T ss_dssp CCCCHHHHHHHHHHTTTSEEEEEESSSTTHHHHHHHHHHHS--------------CSCEEEEESSHHHHHHHHHHHGGG-
T ss_pred CCcCHHHHHHHHHHHhCCCEEEEeCCCCCHHHHHHHHHHHc--------------CCCEEEEeCCHHHHHHHHHHHHhC-
Confidence 57999999999999999999999999999999988776531 457999999999999999998884
Q ss_pred hcccccCCCCce-EEEEEcCcchHHHHHHHhcCCcEEEeChHHHHHHHHcccCCCCCcceeEecCcccccccCcHHHHHH
Q 007814 244 TPMRDAGYPDLR-TLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMNLDNCRYLTLDEADRLVDLGFEDDIRE 322 (588)
Q Consensus 244 ~~~~~~~~~~i~-~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~L~~~l~~~~~~l~~~~~lViDEah~l~~~~~~~~i~~ 322 (588)
+++ +..+.|+... ..+|+|+||+.+...... ....+++|||||||++.+..| +.
T Consensus 157 ---------~~~~v~~~~g~~~~---------~~~i~v~T~~~l~~~~~~---~~~~~~llIiDEaH~l~~~~~----~~ 211 (237)
T 2fz4_A 157 ---------GEEYVGEFSGRIKE---------LKPLTVSTYDSAYVNAEK---LGNRFMLLIFDEVHHLPAESY----VQ 211 (237)
T ss_dssp ---------CGGGEEEESSSCBC---------CCSEEEEEHHHHHHTHHH---HTTTCSEEEEECSSCCCTTTH----HH
T ss_pred ---------CCCeEEEEeCCCCC---------cCCEEEEeHHHHHhhHHH---hcccCCEEEEECCccCCChHH----HH
Confidence 566 7777776542 469999999998665542 124589999999999987654 34
Q ss_pred HHHhhhhcceeEEEecccchH
Q 007814 323 VFDHFKAQRQTLLFSATMPTK 343 (588)
Q Consensus 323 i~~~~~~~~q~l~~SAT~~~~ 343 (588)
++..++ ..+++++|||++..
T Consensus 212 i~~~~~-~~~~l~LSATp~r~ 231 (237)
T 2fz4_A 212 IAQMSI-APFRLGLTATFERE 231 (237)
T ss_dssp HHHTCC-CSEEEEEEESCC--
T ss_pred HHHhcc-CCEEEEEecCCCCC
Confidence 555554 56789999999764
No 92
>4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A*
Probab=99.80 E-value=4.4e-18 Score=187.89 Aligned_cols=111 Identities=18% Similarity=0.256 Sum_probs=75.7
Q ss_pred HHHHhhcCCCCEEEEeCccccHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhcCCcEEEEEcC--ccccCCCCCC-
Q 007814 386 LLECLQKTPPPVLIFCENKADVDDIHEYLLLKGVEAVAVHGGKDQEEREYAISSFKAGKKDVLVATD--VASKGLDFPD- 462 (588)
Q Consensus 386 ll~~l~~~~~~viIF~~s~~~~~~l~~~L~~~g~~~~~ihg~~~~~~R~~~~~~f~~g~~~vLVaT~--~~~~GlDip~- 462 (588)
+...+...++.++||++|....+.+++.|. .+... ...+++..++..+++.|+ ++..||++|. .+++|||+|+
T Consensus 440 i~~l~~~~~g~~lvlF~Sy~~l~~v~~~l~--~~~~~-~~q~~~~~~~~~ll~~f~-~~~~vL~~v~~gsf~EGiD~~g~ 515 (620)
T 4a15_A 440 IEDIILKVKKNTIVYFPSYSLMDRVENRVS--FEHMK-EYRGIDQKELYSMLKKFR-RDHGTIFAVSGGRLSEGINFPGN 515 (620)
T ss_dssp HHHHHHHHCSCEEEEESCHHHHHHHTSSCC--SCCEE-CCTTCCSHHHHHHHHHHT-TSCCEEEEETTSCC--------C
T ss_pred HHHHHHhCCCCEEEEeCCHHHHHHHHHHHH--hcchh-ccCCCChhHHHHHHHHhc-cCCcEEEEEecCceeccccCCCC
Confidence 334444567889999999999999998886 22222 445566678999999999 8888999974 8999999998
Q ss_pred -cceEEecCCCCC-------------------h----------hHHHHHhcccccCCCccEEEEEecC
Q 007814 463 -IQHVINYDMPAE-------------------I----------ENYVHRIGRTGRCGKTGIATTFINK 500 (588)
Q Consensus 463 -v~~VI~~~~p~s-------------------~----------~~y~qriGRagR~g~~g~~~~~~~~ 500 (588)
.+.||..++|.. . ....|.+||+-|.-..--++++++.
T Consensus 516 ~l~~viI~~lPfp~~~p~~~ar~~~~~~~~g~~~~~~y~~pa~~~l~Qa~GRlIR~~~D~G~v~llD~ 583 (620)
T 4a15_A 516 ELEMIILAGLPFPRPDAINRSLFDYYERKYGKGWEYSVVYPTAIKIRQEIGRLIRSAEDTGACVILDK 583 (620)
T ss_dssp CCCEEEESSCCCCCCCHHHHHHHHHHHHHHSCHHHHHTHHHHHHHHHHHHHTTCCSTTCCEEEEEECG
T ss_pred ceEEEEEEcCCCCCCCHHHHHHHHHHHHhhCCCchHHhHHHHHHHHHHHhCccccCCCceEEEEEEcc
Confidence 778999998842 1 1125899999998655555666644
No 93
>1z5z_A Helicase of the SNF2/RAD54 family; hydrolase, recombination, hydrolase-recombination complex; 2.00A {Sulfolobus solfataricus} SCOP: c.37.1.19
Probab=99.77 E-value=1.3e-18 Score=172.49 Aligned_cols=123 Identities=17% Similarity=0.225 Sum_probs=94.8
Q ss_pred hHHHHHHHHHHhh---cCCCCEEEEeCccccHHHHHHHHHHc-CCcEEEEeCCCCHHHHHHHHHHHhcC-CcE-EEEEcC
Q 007814 379 QEAKIVYLLECLQ---KTPPPVLIFCENKADVDDIHEYLLLK-GVEAVAVHGGKDQEEREYAISSFKAG-KKD-VLVATD 452 (588)
Q Consensus 379 ~~~k~~~ll~~l~---~~~~~viIF~~s~~~~~~l~~~L~~~-g~~~~~ihg~~~~~~R~~~~~~f~~g-~~~-vLVaT~ 452 (588)
...|+..+.+.+. ..+.++||||++...++.+...|... |+.+..+||++++.+|..+++.|++| ..+ +|++|+
T Consensus 94 ~s~K~~~L~~ll~~~~~~~~kvlIFs~~~~~~~~l~~~L~~~~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~v~L~st~ 173 (271)
T 1z5z_A 94 RSGKMIRTMEIIEEALDEGDKIAIFTQFVDMGKIIRNIIEKELNTEVPFLYGELSKKERDDIISKFQNNPSVKFIVLSVK 173 (271)
T ss_dssp TCHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHHHCSCCCEECTTSCHHHHHHHHHHHHHCTTCCEEEEECC
T ss_pred cCHHHHHHHHHHHHHHhCCCeEEEEeccHHHHHHHHHHHHHhcCCcEEEEECCCCHHHHHHHHHHhcCCCCCCEEEEehh
Confidence 3455555555543 46789999999999999999999885 99999999999999999999999998 666 799999
Q ss_pred ccccCCCCCCcceEEecCCCCChhHHHHHhcccccCCCccEE--EEEecCC
Q 007814 453 VASKGLDFPDIQHVINYDMPAEIENYVHRIGRTGRCGKTGIA--TTFINKN 501 (588)
Q Consensus 453 ~~~~GlDip~v~~VI~~~~p~s~~~y~qriGRagR~g~~g~~--~~~~~~~ 501 (588)
++++|+|++++++||+||+||++..|.||+||++|.|+++.+ +.|+..+
T Consensus 174 ~~g~Glnl~~a~~VI~~d~~wnp~~~~Q~~gR~~R~Gq~~~v~v~~li~~~ 224 (271)
T 1z5z_A 174 AGGFGINLTSANRVIHFDRWWNPAVEDQATDRVYRIGQTRNVIVHKLISVG 224 (271)
T ss_dssp TTCCCCCCTTCSEEEECSCCSCTTTC--------------CCEEEEEEETT
T ss_pred hhcCCcCcccCCEEEEECCCCChhHHHHHHHhccccCCCCceEEEEEeeCC
Confidence 999999999999999999999999999999999999998765 5566665
No 94
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=98.86 E-value=3.2e-09 Score=116.94 Aligned_cols=146 Identities=18% Similarity=0.205 Sum_probs=91.5
Q ss_pred cHHHHHHHHHHhcCCCEEEEecCCchHh--HHHHHHHHHHHHhhcccCCCCCCCCCEEEEEcCCHHHHHHHHHHHHHHhh
Q 007814 167 TPIQVQGLPVVLSGRDMIGIAFTGSGKT--LVFVLPMIMIAMHEEMMMPIVPGEGPFCLIVCPSRELARQTYEVVEQFLT 244 (588)
Q Consensus 167 ~~~Q~~~i~~il~g~dvii~a~TGsGKT--l~~~lp~l~~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Q~~~~~~~~~~ 244 (588)
++.|..+++.++.++.+++.|++|+||| ++++++++..+. ...+.++++++||..+|.++.+.+.....
T Consensus 151 ~~~Q~~Ai~~~l~~~~~vi~G~pGTGKTt~l~~ll~~l~~~~---------~~~~~~vll~APTg~AA~~L~e~~~~~~~ 221 (608)
T 1w36_D 151 INWQKVAAAVALTRRISVISGGPGTGKTTTVAKLLAALIQMA---------DGERCRIRLAAPTGKAAARLTESLGKALR 221 (608)
T ss_dssp CCHHHHHHHHHHTBSEEEEECCTTSTHHHHHHHHHHHHHHTC---------SSCCCCEEEEBSSHHHHHHHHHHHTHHHH
T ss_pred CHHHHHHHHHHhcCCCEEEEeCCCCCHHHHHHHHHHHHHHhh---------hcCCCeEEEEeCChhHHHHHHHHHHHHHh
Confidence 7899999999999999999999999999 666666664321 12466899999999999999888877655
Q ss_pred cccccCCCCceEEEEEcCcchHHHHHHHhcCCcEEEeChHHHHHHHHcccCCCCCcceeEecCcccccccCcHHHHHHHH
Q 007814 245 PMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMNLDNCRYLTLDEADRLVDLGFEDDIREVF 324 (588)
Q Consensus 245 ~~~~~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~L~~~l~~~~~~l~~~~~lViDEah~l~~~~~~~~i~~i~ 324 (588)
.+ ++..... .+.+. ....+ ..++-.+|+.. . +.........+++||||||+ |++ ...+..++
T Consensus 222 ~l------~l~~~~~-~~~~~--~~~Ti---h~ll~~~~~~~-~-~~~~~~~~l~~d~lIIDEAs-ml~---~~~~~~Ll 283 (608)
T 1w36_D 222 QL------PLTDEQK-KRIPE--DASTL---HRLLGAQPGSQ-R-LRHHAGNPLHLDVLVVDEAS-MID---LPMMSRLI 283 (608)
T ss_dssp HS------SCCSCCC-CSCSC--CCBTT---TSCC-------------CTTSCCSCSEEEECSGG-GCB---HHHHHHHH
T ss_pred cC------CCCHHHH-hccch--hhhhh---HhhhccCCCch-H-HHhccCCCCCCCEEEEechh-hCC---HHHHHHHH
Confidence 43 1110000 00000 00000 11222233221 1 11112223378999999999 554 36778889
Q ss_pred HhhhhcceeEEEecc
Q 007814 325 DHFKAQRQTLLFSAT 339 (588)
Q Consensus 325 ~~~~~~~q~l~~SAT 339 (588)
..++...|++++.=.
T Consensus 284 ~~l~~~~~liLvGD~ 298 (608)
T 1w36_D 284 DALPDHARVIFLGDR 298 (608)
T ss_dssp HTCCTTCEEEEEECT
T ss_pred HhCCCCCEEEEEcch
Confidence 999888898887644
No 95
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=98.13 E-value=2.3e-05 Score=86.51 Aligned_cols=70 Identities=20% Similarity=0.147 Sum_probs=55.4
Q ss_pred CCCCcHHHHHHHHHHhcCCCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEEEEEcCCHHHHHHHHHHHHHH
Q 007814 163 IVQPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFCLIVCPSRELARQTYEVVEQF 242 (588)
Q Consensus 163 ~~~p~~~Q~~~i~~il~g~dvii~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Q~~~~~~~~ 242 (588)
+..+++.|.+|+..++.+.-+++.||+|+|||.+.. .++..+.. ..+.++|+++||...+.++.+.+.+.
T Consensus 178 ~~~ln~~Q~~av~~~l~~~~~li~GppGTGKT~~~~-~~i~~l~~---------~~~~~ilv~a~tn~A~~~l~~~l~~~ 247 (624)
T 2gk6_A 178 LPDLNHSQVYAVKTVLQRPLSLIQGPPGTGKTVTSA-TIVYHLAR---------QGNGPVLVCAPSNIAVDQLTEKIHQT 247 (624)
T ss_dssp SCCCCHHHHHHHHHHHTCSEEEEECCTTSCHHHHHH-HHHHHHHT---------SSSCCEEEEESSHHHHHHHHHHHHTT
T ss_pred cCCCCHHHHHHHHHHhcCCCeEEECCCCCCHHHHHH-HHHHHHHH---------cCCCeEEEEeCcHHHHHHHHHHHHhc
Confidence 467899999999999988888999999999997643 33333332 14568999999999999998887654
No 96
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=98.09 E-value=3e-05 Score=87.69 Aligned_cols=70 Identities=16% Similarity=0.115 Sum_probs=55.7
Q ss_pred CCCCcHHHHHHHHHHhcCCCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEEEEEcCCHHHHHHHHHHHHHH
Q 007814 163 IVQPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFCLIVCPSRELARQTYEVVEQF 242 (588)
Q Consensus 163 ~~~p~~~Q~~~i~~il~g~dvii~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Q~~~~~~~~ 242 (588)
+..+++.|.+|+..++.+.-+++.||.|+|||.+..- ++..+... .+.++|+++||...+.++.+.+.+.
T Consensus 358 ~~~Ln~~Q~~Av~~~l~~~~~lI~GppGTGKT~~i~~-~i~~l~~~---------~~~~ILv~a~tn~A~d~l~~rL~~~ 427 (802)
T 2xzl_A 358 FAQLNSSQSNAVSHVLQRPLSLIQGPPGTGKTVTSAT-IVYHLSKI---------HKDRILVCAPSNVAVDHLAAKLRDL 427 (802)
T ss_dssp SCCCCHHHHHHHHHHTTCSEEEEECSTTSSHHHHHHH-HHHHHHHH---------HCCCEEEEESSHHHHHHHHHHHHHT
T ss_pred cccCCHHHHHHHHHHhcCCCEEEECCCCCCHHHHHHH-HHHHHHhC---------CCCeEEEEcCcHHHHHHHHHHHHhh
Confidence 4568999999999999877789999999999976433 33333331 2567999999999999999988765
No 97
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=98.08 E-value=7.8e-06 Score=90.81 Aligned_cols=68 Identities=24% Similarity=0.216 Sum_probs=53.8
Q ss_pred CCCcHHHHHHHHHHhcCCC-EEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEEEEEcCCHHHHHHHHHHHHHH
Q 007814 164 VQPTPIQVQGLPVVLSGRD-MIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFCLIVCPSRELARQTYEVVEQF 242 (588)
Q Consensus 164 ~~p~~~Q~~~i~~il~g~d-vii~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Q~~~~~~~~ 242 (588)
..+.+-|.+|+..+++.++ .+|.||.|+|||.+..- ++..+.. .+.++|+++||..-+.++.+.+...
T Consensus 188 ~~LN~~Q~~AV~~al~~~~~~lI~GPPGTGKT~ti~~-~I~~l~~----------~~~~ILv~a~TN~AvD~i~erL~~~ 256 (646)
T 4b3f_X 188 TCLDTSQKEAVLFALSQKELAIIHGPPGTGKTTTVVE-IILQAVK----------QGLKVLCCAPSNIAVDNLVERLALC 256 (646)
T ss_dssp TTCCHHHHHHHHHHHHCSSEEEEECCTTSCHHHHHHH-HHHHHHH----------TTCCEEEEESSHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHhcCCCceEEECCCCCCHHHHHHH-HHHHHHh----------CCCeEEEEcCchHHHHHHHHHHHhc
Confidence 3579999999999997776 57789999999976433 3334443 4668999999999999998888664
No 98
>3hgt_A HDA1 complex subunit 3; RECA-like domain, SWI2/SNF2 helical domain, chromatin regulator, coiled coil, nucleus, repressor, transcription; 2.20A {Saccharomyces cerevisiae} PDB: 3hgq_A
Probab=98.04 E-value=1.4e-05 Score=79.47 Aligned_cols=119 Identities=12% Similarity=0.068 Sum_probs=88.6
Q ss_pred hHHHHHHHHHHhhcCCCCEEEEeCccccHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhcCCcEEEEEcCccccCC
Q 007814 379 QEAKIVYLLECLQKTPPPVLIFCENKADVDDIHEYLLLKGVEAVAVHGGKDQEEREYAISSFKAGKKDVLVATDVASKGL 458 (588)
Q Consensus 379 ~~~k~~~ll~~l~~~~~~viIF~~s~~~~~~l~~~L~~~g~~~~~ihg~~~~~~R~~~~~~f~~g~~~vLVaT~~~~~Gl 458 (588)
...-+..++..+.+.+.+++||++.....+.+..+|..+|+.+..+.|.....++. -.++...+.+.|...+-|+
T Consensus 110 Kf~~L~~LL~~l~~~~~kVLIfsq~t~~LDilE~~l~~~~~~y~RlDG~~~~~~~k-----~~~~~~~i~Lltsag~~gi 184 (328)
T 3hgt_A 110 KFSVLRDLINLVQEYETETAIVCRPGRTMDLLEALLLGNKVHIKRYDGHSIKSAAA-----ANDFSCTVHLFSSEGINFT 184 (328)
T ss_dssp HHHHHHHHHHHHTTSCEEEEEEECSTHHHHHHHHHHTTSSCEEEESSSCCC------------CCSEEEEEEESSCCCTT
T ss_pred cHHHHHHHHHHHHhCCCEEEEEECChhHHHHHHHHHhcCCCceEeCCCCchhhhhh-----cccCCceEEEEECCCCCCc
Confidence 33446677777888899999999999999999999999999999999985543221 1245666666677777777
Q ss_pred C-----CCCcceEEecCCCCChhHH-HHHhcccccCC----CccEEEEEecCCC
Q 007814 459 D-----FPDIQHVINYDMPAEIENY-VHRIGRTGRCG----KTGIATTFINKNQ 502 (588)
Q Consensus 459 D-----ip~v~~VI~~~~p~s~~~y-~qriGRagR~g----~~g~~~~~~~~~~ 502 (588)
| +...+.||.||..|++.+- +|.+-|+.|.| +.-.++-|++.+.
T Consensus 185 n~~~~nl~~aD~VI~~DsdwNp~~d~iQa~~r~~R~~~gq~k~v~V~RLvt~~T 238 (328)
T 3hgt_A 185 KYPIKSKARFDMLICLDTTVDTSQKDIQYLLQYKRERKGLERYAPIVRLVAINS 238 (328)
T ss_dssp TSCCCCCSCCSEEEECSTTCCTTSHHHHHHHCCC---------CCEEEEEETTS
T ss_pred CcccccCCCCCEEEEECCCCCCCChHHHHHHHHhhhccCCCCcceEEEEeCCCC
Confidence 6 6789999999999999985 99998888873 3456777777663
No 99
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=97.98 E-value=5.3e-05 Score=85.57 Aligned_cols=70 Identities=20% Similarity=0.160 Sum_probs=55.1
Q ss_pred CCCCcHHHHHHHHHHhcCCCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEEEEEcCCHHHHHHHHHHHHHH
Q 007814 163 IVQPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFCLIVCPSRELARQTYEVVEQF 242 (588)
Q Consensus 163 ~~~p~~~Q~~~i~~il~g~dvii~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Q~~~~~~~~ 242 (588)
...+++.|.+|+..++.+.-+++.||.|+|||.+.. .++..+... .+.++|+++||...+.++.+.+...
T Consensus 354 ~~~Ln~~Q~~Av~~~l~~~~~lI~GppGTGKT~ti~-~~i~~l~~~---------~~~~ilv~a~tn~A~~~l~~~l~~~ 423 (800)
T 2wjy_A 354 LPDLNHSQVYAVKTVLQRPLSLIQGPPGTGKTVTSA-TIVYHLARQ---------GNGPVLVCAPSNIAVDQLTEKIHQT 423 (800)
T ss_dssp SCCCCHHHHHHHHHHHTSSEEEEECCTTSCHHHHHH-HHHHHHHTT---------CSSCEEEEESSHHHHHHHHHHHHTT
T ss_pred ccCCCHHHHHHHHHhccCCeEEEEcCCCCCHHHHHH-HHHHHHHHc---------CCCcEEEEcCcHHHHHHHHHHHHHh
Confidence 456899999999999988888999999999996643 333343321 4568999999999999988887654
No 100
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=97.96 E-value=3.1e-05 Score=84.38 Aligned_cols=125 Identities=16% Similarity=0.105 Sum_probs=79.5
Q ss_pred CCcHHHHHHHHHHhcCCCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEEEEEcCCHHHHHHHHHHHHHHhh
Q 007814 165 QPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFCLIVCPSRELARQTYEVVEQFLT 244 (588)
Q Consensus 165 ~p~~~Q~~~i~~il~g~dvii~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Q~~~~~~~~~~ 244 (588)
.+++.|.+++..++.++.+++.|+.|+|||.+. ..++..+.. .+.++++++||...+..+.+.+
T Consensus 189 ~L~~~Q~~Av~~~~~~~~~~I~G~pGTGKTt~i-~~l~~~l~~----------~g~~Vl~~ApT~~Aa~~L~e~~----- 252 (574)
T 3e1s_A 189 GLSEEQASVLDQLAGHRLVVLTGGPGTGKSTTT-KAVADLAES----------LGLEVGLCAPTGKAARRLGEVT----- 252 (574)
T ss_dssp TCCHHHHHHHHHHTTCSEEEEECCTTSCHHHHH-HHHHHHHHH----------TTCCEEEEESSHHHHHHHHHHH-----
T ss_pred CCCHHHHHHHHHHHhCCEEEEEcCCCCCHHHHH-HHHHHHHHh----------cCCeEEEecCcHHHHHHhHhhh-----
Confidence 689999999999999999999999999999552 223333322 4677999999999888765432
Q ss_pred cccccCCCCceEEEEEcCcchHHHHHHHhcCCcEEEeChHHHHHHHHcccCCCCCcceeEecCcccccccCcHHHHHHHH
Q 007814 245 PMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMNLDNCRYLTLDEADRLVDLGFEDDIREVF 324 (588)
Q Consensus 245 ~~~~~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~L~~~l~~~~~~l~~~~~lViDEah~l~~~~~~~~i~~i~ 324 (588)
+.....++ .+. .. .|. .+.........+++|||||++.+.. ..+..++
T Consensus 253 --------~~~a~Tih----------~ll---~~---~~~----~~~~~~~~~~~~dvlIIDEasml~~----~~~~~Ll 300 (574)
T 3e1s_A 253 --------GRTASTVH----------RLL---GY---GPQ----GFRHNHLEPAPYDLLIVDEVSMMGD----ALMLSLL 300 (574)
T ss_dssp --------TSCEEEHH----------HHT---TE---ETT----EESCSSSSCCSCSEEEECCGGGCCH----HHHHHHH
T ss_pred --------cccHHHHH----------HHH---cC---Ccc----hhhhhhcccccCCEEEEcCccCCCH----HHHHHHH
Confidence 11111110 000 00 000 0011122344678999999998643 5667777
Q ss_pred HhhhhcceeEEEe
Q 007814 325 DHFKAQRQTLLFS 337 (588)
Q Consensus 325 ~~~~~~~q~l~~S 337 (588)
..++...+++++.
T Consensus 301 ~~~~~~~~lilvG 313 (574)
T 3e1s_A 301 AAVPPGARVLLVG 313 (574)
T ss_dssp TTSCTTCEEEEEE
T ss_pred HhCcCCCEEEEEe
Confidence 7777666666653
No 101
>3lfu_A DNA helicase II; SF1 helicase, ATP-binding, DNA damage, DNA REP replication, DNA-binding, hydrolase, nucleotide-B SOS response; HET: DNA; 1.80A {Escherichia coli} PDB: 2is6_A* 2is2_A* 2is1_A* 2is4_A*
Probab=97.95 E-value=0.00043 Score=76.79 Aligned_cols=72 Identities=18% Similarity=0.148 Sum_probs=54.1
Q ss_pred CCCcHHHHHHHHHHhcCCCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEEEEEcCCHHHHHHHHHHHHHHh
Q 007814 164 VQPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFCLIVCPSRELARQTYEVVEQFL 243 (588)
Q Consensus 164 ~~p~~~Q~~~i~~il~g~dvii~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Q~~~~~~~~~ 243 (588)
..+++-|.+++.. ....++|.|+.|||||.+.+--+...+.... ....++|++++|+..+.++.+.+.+++
T Consensus 8 ~~Ln~~Q~~av~~--~~~~~lV~a~aGsGKT~~l~~ri~~l~~~~~-------~~~~~iL~ltft~~aa~e~~~rl~~~~ 78 (647)
T 3lfu_A 8 DSLNDKQREAVAA--PRSNLLVLAGAGSGKTRVLVHRIAWLMSVEN-------CSPYSIMAVTFTNKAAAEMRHRIGQLM 78 (647)
T ss_dssp TTCCHHHHHHHTC--CSSCEEEEECTTSCHHHHHHHHHHHHHHTSC-------CCGGGEEEEESSHHHHHHHHHHHHHHH
T ss_pred hcCCHHHHHHHhC--CCCCEEEEECCCCCHHHHHHHHHHHHHHhCC-------CChhhEEEEeccHHHHHHHHHHHHHHh
Confidence 4789999999973 4678999999999999775544443332211 122479999999999999999998875
Q ss_pred h
Q 007814 244 T 244 (588)
Q Consensus 244 ~ 244 (588)
.
T Consensus 79 ~ 79 (647)
T 3lfu_A 79 G 79 (647)
T ss_dssp C
T ss_pred c
Confidence 3
No 102
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=97.83 E-value=5.8e-05 Score=80.18 Aligned_cols=69 Identities=12% Similarity=0.084 Sum_probs=49.9
Q ss_pred CCCCCCcHHHHHHHHHHhcC-----CCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEEEEEcCCHHHHHHH
Q 007814 161 KGIVQPTPIQVQGLPVVLSG-----RDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFCLIVCPSRELARQT 235 (588)
Q Consensus 161 ~g~~~p~~~Q~~~i~~il~g-----~dvii~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Q~ 235 (588)
+.|..+++-|.+++..++.. ..+++.|+.|||||.+. ..++..+... ....+++++||...|..+
T Consensus 21 ~~~~~Ln~~Q~~av~~~~~~i~~~~~~~li~G~aGTGKT~ll-~~~~~~l~~~---------~~~~il~~a~T~~Aa~~l 90 (459)
T 3upu_A 21 MTFDDLTEGQKNAFNIVMKAIKEKKHHVTINGPAGTGATTLT-KFIIEALIST---------GETGIILAAPTHAAKKIL 90 (459)
T ss_dssp CCSSCCCHHHHHHHHHHHHHHHSSSCEEEEECCTTSCHHHHH-HHHHHHHHHT---------TCCCEEEEESSHHHHHHH
T ss_pred CccccCCHHHHHHHHHHHHHHhcCCCEEEEEeCCCCCHHHHH-HHHHHHHHhc---------CCceEEEecCcHHHHHHH
Confidence 45889999999999987632 38999999999999543 3344444332 123689999999888766
Q ss_pred HHHH
Q 007814 236 YEVV 239 (588)
Q Consensus 236 ~~~~ 239 (588)
.+.+
T Consensus 91 ~~~~ 94 (459)
T 3upu_A 91 SKLS 94 (459)
T ss_dssp HHHH
T ss_pred Hhhh
Confidence 5543
No 103
>2o0j_A Terminase, DNA packaging protein GP17; nucleotide-binding fold, hydrolase; HET: DNA ADP; 1.80A {Enterobacteria phage T4} PDB: 2o0h_A* 2o0k_A*
Probab=97.33 E-value=0.0025 Score=65.41 Aligned_cols=73 Identities=15% Similarity=0.093 Sum_probs=57.6
Q ss_pred CCcHHHHHHHHHHhcCCCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEEEEEcCCHHHHHHHHHHHHHHhh
Q 007814 165 QPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFCLIVCPSRELARQTYEVVEQFLT 244 (588)
Q Consensus 165 ~p~~~Q~~~i~~il~g~dvii~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Q~~~~~~~~~~ 244 (588)
.|+|+|...+..+...+-+++..+-+.|||.+....++..+.. ..+..+++++|++.-|..+++.+..+..
T Consensus 163 ~L~p~Qk~il~~l~~~R~~vi~~sRq~GKT~l~a~~~l~~a~~---------~~g~~v~~vA~t~~qA~~vf~~i~~mi~ 233 (385)
T 2o0j_A 163 QLRDYQRDMLKIMSSKRMTVCNLSRQLGKTTVVAIFLAHFVCF---------NKDKAVGILAHKGSMSAEVLDRTKQAIE 233 (385)
T ss_dssp CCCHHHHHHHHHHHHSSEEEEEECSSSCHHHHHHHHHHHHHHS---------SSSCEEEEEESSHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHhhccCcEEEEEEcCcCChhHHHHHHHHHHHHh---------CCCCeEEEEeCCHHHHHHHHHHHHHHHH
Confidence 6899999999877555678999999999998766655543332 2466899999999999999988888775
Q ss_pred cc
Q 007814 245 PM 246 (588)
Q Consensus 245 ~~ 246 (588)
.+
T Consensus 234 ~~ 235 (385)
T 2o0j_A 234 LL 235 (385)
T ss_dssp HS
T ss_pred hC
Confidence 43
No 104
>3cpe_A Terminase, DNA packaging protein GP17; large terminase, alternative initiation, ATP-binding, DNA- binding, hydrolase, nuclease; HET: DNA; 2.80A {Bacteriophage T4} PDB: 3ezk_A*
Probab=97.02 E-value=0.012 Score=64.39 Aligned_cols=73 Identities=15% Similarity=0.093 Sum_probs=57.8
Q ss_pred CCcHHHHHHHHHHhcCCCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEEEEEcCCHHHHHHHHHHHHHHhh
Q 007814 165 QPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFCLIVCPSRELARQTYEVVEQFLT 244 (588)
Q Consensus 165 ~p~~~Q~~~i~~il~g~dvii~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Q~~~~~~~~~~ 244 (588)
.|+|+|...+..+-..+-+++..+-|+|||.+....++..+.. ..+..+++++|++..|..+++.++.++.
T Consensus 163 ~l~p~Q~~i~~~l~~~r~~~i~~~Rq~GKS~~~a~~~l~~~~~---------~~~~~i~~va~t~~qA~~~~~~i~~~i~ 233 (592)
T 3cpe_A 163 QLRDYQRDMLKIMSSKRMTVCNLSRQLGKTTVVAIFLAHFVCF---------NKDKAVGILAHKGSMSAEVLDRTKQAIE 233 (592)
T ss_dssp CCCHHHHHHHHHHHHCSEEEEEECSSSCHHHHHHHHHHHHHHT---------SSSCEEEEEESSHHHHHHHHHHHHHHHT
T ss_pred cCCHHHHHHHHhhccccEEEEEEcCccChHHHHHHHHHHHHHh---------CCCCeEEEEECCHHHHHHHHHHHHHHHH
Confidence 5899999999877556789999999999998766554444433 2356899999999999999988888776
Q ss_pred cc
Q 007814 245 PM 246 (588)
Q Consensus 245 ~~ 246 (588)
.+
T Consensus 234 ~~ 235 (592)
T 3cpe_A 234 LL 235 (592)
T ss_dssp TS
T ss_pred hC
Confidence 54
No 105
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=96.83 E-value=0.0061 Score=55.37 Aligned_cols=31 Identities=23% Similarity=0.270 Sum_probs=22.5
Q ss_pred cHHHHHHHHHHh---------cCCCEEEEecCCchHhHHH
Q 007814 167 TPIQVQGLPVVL---------SGRDMIGIAFTGSGKTLVF 197 (588)
Q Consensus 167 ~~~Q~~~i~~il---------~g~dvii~a~TGsGKTl~~ 197 (588)
.+.|..++..+. .|+.+++.+|+|+|||...
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~g~~~~l~G~~G~GKTtL~ 55 (180)
T 3ec2_A 16 NVSQNRALLTIRVFVHNFNPEEGKGLTFVGSPGVGKTHLA 55 (180)
T ss_dssp SHHHHHHHHHHHHHHHSCCGGGCCEEEECCSSSSSHHHHH
T ss_pred CHHHHHHHHHHHHHHHhccccCCCEEEEECCCCCCHHHHH
Confidence 345665555543 4788999999999999554
No 106
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=96.23 E-value=0.0047 Score=54.46 Aligned_cols=42 Identities=19% Similarity=0.422 Sum_probs=25.5
Q ss_pred CCcceeEecCcccccccCcHHHHHHHHHhhhhc-ceeEEEeccc
Q 007814 298 DNCRYLTLDEADRLVDLGFEDDIREVFDHFKAQ-RQTLLFSATM 340 (588)
Q Consensus 298 ~~~~~lViDEah~l~~~~~~~~i~~i~~~~~~~-~q~l~~SAT~ 340 (588)
.+.++||+||++.+.... ...+..+++.+... ..++++|+..
T Consensus 82 ~~~~lLilDE~~~~~~~~-~~~l~~li~~~~~~g~~~iiits~~ 124 (149)
T 2kjq_A 82 FEAEYLAVDQVEKLGNEE-QALLFSIFNRFRNSGKGFLLLGSEY 124 (149)
T ss_dssp GGCSEEEEESTTCCCSHH-HHHHHHHHHHHHHHTCCEEEEEESS
T ss_pred hCCCEEEEeCccccChHH-HHHHHHHHHHHHHcCCcEEEEECCC
Confidence 356899999999865543 45555565555443 3325555553
No 107
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=96.04 E-value=0.012 Score=61.14 Aligned_cols=107 Identities=16% Similarity=0.028 Sum_probs=60.1
Q ss_pred CEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEEEEEcCCHHHHHHHHHHHHHHhhcccccCCCCceEEEEEc
Q 007814 182 DMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFCLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIG 261 (588)
Q Consensus 182 dvii~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Q~~~~~~~~~~~~~~~~~~~i~~~~~~g 261 (588)
=.++.|+.|+|||....- . .. ....+|++||++++..+.+.+.+... +
T Consensus 163 v~~I~G~aGsGKTt~I~~----~-~~-----------~~~~lVlTpT~~aa~~l~~kl~~~~~-------~--------- 210 (446)
T 3vkw_A 163 VVLVDGVPGCGKTKEILS----R-VN-----------FEEDLILVPGRQAAEMIRRRANASGI-------I--------- 210 (446)
T ss_dssp EEEEEECTTSCHHHHHHH----H-CC-----------TTTCEEEESCHHHHHHHHHHHTTTSC-------C---------
T ss_pred EEEEEcCCCCCHHHHHHH----H-hc-----------cCCeEEEeCCHHHHHHHHHHhhhcCc-------c---------
Confidence 356789999999965311 1 11 12359999999999887776633200 0
Q ss_pred CcchHHHHHHHhcCCcEEEeChHHHHHHHHcccCCCCCcceeEecCcccccccCcHHHHHHHHHhhhhcceeEEEecc
Q 007814 262 GVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMNLDNCRYLTLDEADRLVDLGFEDDIREVFDHFKAQRQTLLFSAT 339 (588)
Q Consensus 262 g~~~~~~~~~l~~~~~IvV~Tp~~L~~~l~~~~~~l~~~~~lViDEah~l~~~~~~~~i~~i~~~~~~~~q~l~~SAT 339 (588)
.....-|.|-++++. .......-.+++||||||-.+ +. ..+..++...+. .+++++.-+
T Consensus 211 ------------~~~~~~V~T~dsfL~--~~~~~~~~~~d~liiDE~sm~-~~---~~l~~l~~~~~~-~~vilvGD~ 269 (446)
T 3vkw_A 211 ------------VATKDNVRTVDSFLM--NYGKGARCQFKRLFIDEGLML-HT---GCVNFLVEMSLC-DIAYVYGDT 269 (446)
T ss_dssp ------------CCCTTTEEEHHHHHH--TTTSSCCCCCSEEEEETGGGS-CH---HHHHHHHHHTTC-SEEEEEECT
T ss_pred ------------ccccceEEEeHHhhc--CCCCCCCCcCCEEEEeCcccC-CH---HHHHHHHHhCCC-CEEEEecCc
Confidence 001233667665432 122222234789999999854 33 334444444443 455554433
No 108
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=95.80 E-value=0.043 Score=54.85 Aligned_cols=18 Identities=22% Similarity=0.259 Sum_probs=15.4
Q ss_pred CCCEEEEecCCchHhHHH
Q 007814 180 GRDMIGIAFTGSGKTLVF 197 (588)
Q Consensus 180 g~dvii~a~TGsGKTl~~ 197 (588)
+..+++.||+|+|||...
T Consensus 37 ~~~lll~G~~GtGKT~la 54 (324)
T 1l8q_A 37 YNPIFIYGSVGTGKTHLL 54 (324)
T ss_dssp CSSEEEECSSSSSHHHHH
T ss_pred CCeEEEECCCCCcHHHHH
Confidence 468999999999999654
No 109
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=95.79 E-value=0.013 Score=54.59 Aligned_cols=40 Identities=13% Similarity=0.055 Sum_probs=26.4
Q ss_pred CCCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEEEEEcCCHH
Q 007814 180 GRDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFCLIVCPSRE 230 (588)
Q Consensus 180 g~dvii~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~Lil~Ptr~ 230 (588)
|+=.++.+++|||||.+.+--+..+. . .+.+++++.|...
T Consensus 28 G~l~vitG~MgsGKTT~lL~~a~r~~-~----------~g~kVli~k~~~d 67 (214)
T 2j9r_A 28 GWIEVICGSMFSGKSEELIRRVRRTQ-F----------AKQHAIVFKPCID 67 (214)
T ss_dssp CEEEEEECSTTSCHHHHHHHHHHHHH-H----------TTCCEEEEECC--
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHH-H----------CCCEEEEEEeccC
Confidence 44446789999999977554444332 2 4678999998753
No 110
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=95.78 E-value=0.024 Score=52.08 Aligned_cols=38 Identities=13% Similarity=-0.001 Sum_probs=26.5
Q ss_pred CCCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEEEEEcCC
Q 007814 180 GRDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFCLIVCPS 228 (588)
Q Consensus 180 g~dvii~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~Lil~Pt 228 (588)
|+=.++.+++|||||.+.+-.+... .. .+.+++++.|.
T Consensus 8 g~i~v~~G~mgsGKTT~ll~~a~r~-~~----------~g~kV~v~k~~ 45 (191)
T 1xx6_A 8 GWVEVIVGPMYSGKSEELIRRIRRA-KI----------AKQKIQVFKPE 45 (191)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHH-HH----------TTCCEEEEEEC
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHH-HH----------CCCEEEEEEec
Confidence 4556778999999997754433333 22 46789999887
No 111
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=95.76 E-value=0.014 Score=53.41 Aligned_cols=40 Identities=18% Similarity=0.009 Sum_probs=26.4
Q ss_pred cCCCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEEEEEcCCH
Q 007814 179 SGRDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFCLIVCPSR 229 (588)
Q Consensus 179 ~g~dvii~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~Lil~Ptr 229 (588)
.|+=.++.+++|+|||...+--+.. +.. .+.+++++.|..
T Consensus 2 ~g~i~vi~G~~gsGKTT~ll~~~~~-~~~----------~g~~v~~~~~~~ 41 (184)
T 2orw_A 2 SGKLTVITGPMYSGKTTELLSFVEI-YKL----------GKKKVAVFKPKI 41 (184)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHH-HHH----------TTCEEEEEEEC-
T ss_pred ccEEEEEECCCCCCHHHHHHHHHHH-HHH----------CCCeEEEEeecc
Confidence 3555788999999999775433332 222 356788888873
No 112
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=95.74 E-value=0.093 Score=52.22 Aligned_cols=20 Identities=10% Similarity=-0.117 Sum_probs=16.5
Q ss_pred cCCCEEEEecCCchHhHHHH
Q 007814 179 SGRDMIGIAFTGSGKTLVFV 198 (588)
Q Consensus 179 ~g~dvii~a~TGsGKTl~~~ 198 (588)
.+.++++.||+|+|||.+.-
T Consensus 44 ~~~~lli~GpPGTGKT~~v~ 63 (318)
T 3te6_A 44 QNKLFYITNADDSTKFQLVN 63 (318)
T ss_dssp CCCEEEEECCCSHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHH
Confidence 45689999999999996643
No 113
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=95.48 E-value=0.013 Score=55.37 Aligned_cols=92 Identities=11% Similarity=0.077 Sum_probs=50.5
Q ss_pred cCCCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEEEEEcCCHHHHHHHHHHHHHHhhcccccCCCCceEEE
Q 007814 179 SGRDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFCLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLL 258 (588)
Q Consensus 179 ~g~dvii~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Q~~~~~~~~~~~~~~~~~~~i~~~~ 258 (588)
.|.=+++.+++|+|||.+.+-.+... .. .+.+++++.|...-. . ...+...+ ++
T Consensus 11 ~G~i~litG~mGsGKTT~ll~~~~r~-~~----------~g~kVli~~~~~d~r---~--~~~i~srl------G~---- 64 (223)
T 2b8t_A 11 IGWIEFITGPMFAGKTAELIRRLHRL-EY----------ADVKYLVFKPKIDTR---S--IRNIQSRT------GT---- 64 (223)
T ss_dssp CCEEEEEECSTTSCHHHHHHHHHHHH-HH----------TTCCEEEEEECCCGG---G--CSSCCCCC------CC----
T ss_pred CcEEEEEECCCCCcHHHHHHHHHHHH-Hh----------cCCEEEEEEeccCch---H--HHHHHHhc------CC----
Confidence 45556778999999997754443333 22 456788887764210 0 00111111 10
Q ss_pred EEcCcchHHHHHHHhcCCcEEEeChHHHHHHHHcccCCCCCcceeEecCccccc
Q 007814 259 CIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMNLDNCRYLTLDEADRLV 312 (588)
Q Consensus 259 ~~gg~~~~~~~~~l~~~~~IvV~Tp~~L~~~l~~~~~~l~~~~~lViDEah~l~ 312 (588)
.. ..+-+.+...+.+.+... ..-..+++|||||++.+.
T Consensus 65 -----~~----------~~~~~~~~~~i~~~i~~~-~~~~~~dvViIDEaQ~l~ 102 (223)
T 2b8t_A 65 -----SL----------PSVEVESAPEILNYIMSN-SFNDETKVIGIDEVQFFD 102 (223)
T ss_dssp -----SS----------CCEEESSTHHHHHHHHST-TSCTTCCEEEECSGGGSC
T ss_pred -----Cc----------cccccCCHHHHHHHHHHH-hhCCCCCEEEEecCccCc
Confidence 00 123355666666665542 223457899999999753
No 114
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=95.36 E-value=0.092 Score=54.97 Aligned_cols=43 Identities=19% Similarity=0.427 Sum_probs=24.9
Q ss_pred CcceeEecCccccccc-CcHHHHHHHHHhhh-hcceeEEEecccc
Q 007814 299 NCRYLTLDEADRLVDL-GFEDDIREVFDHFK-AQRQTLLFSATMP 341 (588)
Q Consensus 299 ~~~~lViDEah~l~~~-~~~~~i~~i~~~~~-~~~q~l~~SAT~~ 341 (588)
..++|+|||+|.+.+. .....+..++..+. ...++|+.|...+
T Consensus 194 ~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~~~ 238 (440)
T 2z4s_A 194 KVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREP 238 (440)
T ss_dssp TCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESSCG
T ss_pred CCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECCCH
Confidence 5678999999998863 22344444444433 3345555444333
No 115
>1pjr_A PCRA; DNA repair, DNA replication, SOS response, helicase, ATP- binding, DNA-binding; 2.50A {Geobacillus stearothermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1qhg_A* 3pjr_A* 2pjr_A* 1qhh_B* 1qhh_D* 1qhh_A* 1qhh_C* 2pjr_B*
Probab=95.33 E-value=0.036 Score=62.11 Aligned_cols=72 Identities=19% Similarity=0.165 Sum_probs=54.3
Q ss_pred CCCcHHHHHHHHHHhcCCCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEEEEEcCCHHHHHHHHHHHHHHh
Q 007814 164 VQPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFCLIVCPSRELARQTYEVVEQFL 243 (588)
Q Consensus 164 ~~p~~~Q~~~i~~il~g~dvii~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Q~~~~~~~~~ 243 (588)
..+++-|.+++.. ....++|.|+.|||||.+..--+...+.+.. -....+|+|+.|+..|.++.+.+.+++
T Consensus 10 ~~Ln~~Q~~av~~--~~g~~lV~AgAGSGKT~vL~~ri~~ll~~~~-------~~p~~IL~vTFTnkAA~Em~~Rl~~~l 80 (724)
T 1pjr_A 10 AHLNKEQQEAVRT--TEGPLLIMAGAGSGKTRVLTHRIAYLMAEKH-------VAPWNILAITFTNKAAREMRERVQSLL 80 (724)
T ss_dssp TTSCHHHHHHHHC--CSSCEEEEECTTSCHHHHHHHHHHHHHHTTC-------CCGGGEEEEESSHHHHHHHHHHHHHHH
T ss_pred hhCCHHHHHHHhC--CCCCEEEEEcCCCCHHHHHHHHHHHHHHhcC-------CCHHHeEEEeccHHHHHHHHHHHHHHh
Confidence 4689999999875 4578999999999999775544444333211 123468999999999999999988875
Q ss_pred h
Q 007814 244 T 244 (588)
Q Consensus 244 ~ 244 (588)
.
T Consensus 81 ~ 81 (724)
T 1pjr_A 81 G 81 (724)
T ss_dssp G
T ss_pred c
Confidence 3
No 116
>1uaa_A REP helicase, protein (ATP-dependent DNA helicase REP.); complex (helicase/DNA), DNA unwinding, hydrolase/DNA complex; HET: DNA; 3.00A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19
Probab=95.32 E-value=0.023 Score=63.09 Aligned_cols=71 Identities=24% Similarity=0.133 Sum_probs=53.9
Q ss_pred CCcHHHHHHHHHHhcCCCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEEEEEcCCHHHHHHHHHHHHHHhh
Q 007814 165 QPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFCLIVCPSRELARQTYEVVEQFLT 244 (588)
Q Consensus 165 ~p~~~Q~~~i~~il~g~dvii~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Q~~~~~~~~~~ 244 (588)
.+++-|.+++.. .+..++|.|+.|||||.+..--+...+.+.. -....+|+|+.|+..|.++.+.+.+.+.
T Consensus 2 ~L~~~Q~~av~~--~~~~~lV~AgaGSGKT~~l~~ri~~ll~~~~-------~~~~~IL~lTfT~~Aa~em~~Rl~~~l~ 72 (673)
T 1uaa_A 2 RLNPGQQQAVEF--VTGPCLVLAGAGSGKTRVITNKIAHLIRGCG-------YQARHIAAVTFTNKAAREMKERVGQTLG 72 (673)
T ss_dssp CCCHHHHHHHHC--CSSEEEECCCTTSCHHHHHHHHHHHHHHHHC-------CCGGGEEEEESSHHHHHHHHHHHHHHSC
T ss_pred CCCHHHHHHHhC--CCCCEEEEeCCCCChHHHHHHHHHHHHHhcC-------CCHHHeEEEeccHHHHHHHHHHHHHHcC
Confidence 578999999875 3678999999999999775544444433321 1234689999999999999999988753
No 117
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=95.23 E-value=0.036 Score=52.20 Aligned_cols=40 Identities=15% Similarity=0.104 Sum_probs=28.0
Q ss_pred cCCCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEEEEEcCCH
Q 007814 179 SGRDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFCLIVCPSR 229 (588)
Q Consensus 179 ~g~dvii~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~Lil~Ptr 229 (588)
.|+=.++.+++|||||...+--+..+. ..|.+++++-|..
T Consensus 18 ~g~l~v~~G~MgsGKTT~lL~~~~r~~-----------~~g~kvli~kp~~ 57 (234)
T 2orv_A 18 RGQIQVILGPMFSGKSTELMRRVRRFQ-----------IAQYKCLVIKYAK 57 (234)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHHH-----------TTTCCEEEEEETT
T ss_pred ceEEEEEECCCCCcHHHHHHHHHHHHH-----------HCCCeEEEEeecC
Confidence 456667789999999977554444332 2567889988874
No 118
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=95.19 E-value=0.13 Score=53.34 Aligned_cols=54 Identities=19% Similarity=0.344 Sum_probs=35.9
Q ss_pred CCcceeEecCccccc---ccCcHHHHHHHHHhhhhcceeEEEecccchHHHHHHHHh
Q 007814 298 DNCRYLTLDEADRLV---DLGFEDDIREVFDHFKAQRQTLLFSATMPTKIQNFARSA 351 (588)
Q Consensus 298 ~~~~~lViDEah~l~---~~~~~~~i~~i~~~~~~~~q~l~~SAT~~~~i~~~~~~~ 351 (588)
..+++||+|++-++. +..+...+..+...+.+..-++.++|+......+.+..+
T Consensus 178 ~~~DvvIIDTaGr~~~~~d~~lm~el~~i~~~~~pd~vlLVlDa~~gq~a~~~a~~f 234 (433)
T 3kl4_A 178 NKMDIIIVDTAGRHGYGEETKLLEEMKEMYDVLKPDDVILVIDASIGQKAYDLASRF 234 (433)
T ss_dssp TTCSEEEEEECCCSSSCCTTHHHHHHHHHHHHHCCSEEEEEEEGGGGGGGHHHHHHH
T ss_pred cCCCEEEEECCCCccccCCHHHHHHHHHHHHhhCCcceEEEEeCccchHHHHHHHHH
Confidence 578899999998754 333445666666666666667778888765544444433
No 119
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=94.84 E-value=0.035 Score=52.39 Aligned_cols=19 Identities=16% Similarity=0.080 Sum_probs=16.2
Q ss_pred cCCCEEEEecCCchHhHHH
Q 007814 179 SGRDMIGIAFTGSGKTLVF 197 (588)
Q Consensus 179 ~g~dvii~a~TGsGKTl~~ 197 (588)
.++.+++.||+|+|||...
T Consensus 51 ~~~~~ll~G~~G~GKT~la 69 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLI 69 (242)
T ss_dssp SCSEEEEECSTTSSHHHHH
T ss_pred CCCeEEEECCCCCCHHHHH
Confidence 4678999999999999654
No 120
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=94.75 E-value=0.26 Score=47.69 Aligned_cols=17 Identities=24% Similarity=0.081 Sum_probs=14.9
Q ss_pred CCEEEEecCCchHhHHH
Q 007814 181 RDMIGIAFTGSGKTLVF 197 (588)
Q Consensus 181 ~dvii~a~TGsGKTl~~ 197 (588)
+.+++.+|+|+|||.++
T Consensus 65 ~~vLl~G~~GtGKT~la 81 (272)
T 1d2n_A 65 VSVLLEGPPHSGKTALA 81 (272)
T ss_dssp EEEEEECSTTSSHHHHH
T ss_pred eEEEEECCCCCcHHHHH
Confidence 57999999999999664
No 121
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=94.69 E-value=0.14 Score=47.06 Aligned_cols=17 Identities=24% Similarity=0.305 Sum_probs=15.0
Q ss_pred CCEEEEecCCchHhHHH
Q 007814 181 RDMIGIAFTGSGKTLVF 197 (588)
Q Consensus 181 ~dvii~a~TGsGKTl~~ 197 (588)
+.+++.+|+|+|||...
T Consensus 55 ~~~~l~G~~GtGKT~la 71 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLL 71 (202)
T ss_dssp CEEEEECSTTSSHHHHH
T ss_pred CeEEEECCCCCCHHHHH
Confidence 78999999999999654
No 122
>3u4q_A ATP-dependent helicase/nuclease subunit A; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_A*
Probab=94.54 E-value=0.052 Score=64.52 Aligned_cols=73 Identities=29% Similarity=0.226 Sum_probs=54.9
Q ss_pred CCCcHHHHHHHHHHhcCCCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEEEEEcCCHHHHHHHHHHHHHHh
Q 007814 164 VQPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFCLIVCPSRELARQTYEVVEQFL 243 (588)
Q Consensus 164 ~~p~~~Q~~~i~~il~g~dvii~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Q~~~~~~~~~ 243 (588)
.++|+-|.++|..- +++++|.|..|||||.+.+--++..+.... .+-....+|+|++|++.|..+.+.+...+
T Consensus 9 ~~~t~eQ~~~i~~~--~~~~~v~a~AGSGKT~vl~~ri~~ll~~~~-----~~~~~~~il~~Tft~~aa~e~~~ri~~~l 81 (1232)
T 3u4q_A 9 STWTDDQWNAIVST--GQDILVAAAAGSGKTAVLVERMIRKITAEE-----NPIDVDRLLVVTFTNASAAEMKHRIAEAL 81 (1232)
T ss_dssp -CCCHHHHHHHHCC--SSCEEEEECTTCCHHHHHHHHHHHHHSCSS-----SCCCGGGEEEECSSHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHhCC--CCCEEEEecCCCcHHHHHHHHHHHHHhcCC-----CCCCccceEEEeccHHHHHHHHHHHHHHH
Confidence 36899999998753 889999999999999876555555443311 01133479999999999999999888754
No 123
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=94.48 E-value=0.19 Score=49.87 Aligned_cols=19 Identities=16% Similarity=0.251 Sum_probs=16.1
Q ss_pred CCCEEEEecCCchHhHHHH
Q 007814 180 GRDMIGIAFTGSGKTLVFV 198 (588)
Q Consensus 180 g~dvii~a~TGsGKTl~~~ 198 (588)
++++++.||+|+|||....
T Consensus 152 ~~~lll~G~~GtGKT~La~ 170 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLA 170 (308)
T ss_dssp CCEEEEECSTTSSHHHHHH
T ss_pred CceEEEECCCCCCHHHHHH
Confidence 6899999999999996543
No 124
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=94.20 E-value=0.07 Score=48.86 Aligned_cols=39 Identities=15% Similarity=0.095 Sum_probs=26.1
Q ss_pred cCCCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEEEEEcCC
Q 007814 179 SGRDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFCLIVCPS 228 (588)
Q Consensus 179 ~g~dvii~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~Lil~Pt 228 (588)
.|+=.++.+++|||||.-. +-.+..... .+.+++++.|.
T Consensus 19 ~g~l~fiyG~MgsGKTt~L-l~~i~n~~~----------~~~kvl~~kp~ 57 (195)
T 1w4r_A 19 RGQIQVILGPMFSGKSTEL-MRRVRRFQI----------AQYKCLVIKYA 57 (195)
T ss_dssp CCEEEEEEECTTSCHHHHH-HHHHHHHHH----------TTCCEEEEEET
T ss_pred ceEEEEEECCCCCcHHHHH-HHHHHHHHH----------cCCeEEEEccc
Confidence 4566788899999999543 333333322 35678999876
No 125
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}
Probab=94.16 E-value=0.048 Score=50.74 Aligned_cols=40 Identities=15% Similarity=0.013 Sum_probs=26.2
Q ss_pred cCCCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEEEEEcCCH
Q 007814 179 SGRDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFCLIVCPSR 229 (588)
Q Consensus 179 ~g~dvii~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~Lil~Ptr 229 (588)
.|.=.++.+++|||||...+-- +..+.. .+.+++++-|..
T Consensus 27 ~G~I~vitG~M~sGKTT~Llr~-~~r~~~----------~g~kvli~kp~~ 66 (219)
T 3e2i_A 27 SGWIECITGSMFSGKSEELIRR-LRRGIY----------AKQKVVVFKPAI 66 (219)
T ss_dssp CCEEEEEEECTTSCHHHHHHHH-HHHHHH----------TTCCEEEEEEC-
T ss_pred CceEEEEECCCCCCHHHHHHHH-HHHHHH----------cCCceEEEEecc
Confidence 3555678899999999654333 333322 456789998864
No 126
>2zpa_A Uncharacterized protein YPFI; RNA modification enzyme, RNA helicase, acetyltransferase, GCN5 acetyltransferase; HET: ACO ADP; 2.35A {Escherichia coli K12}
Probab=94.07 E-value=0.08 Score=57.81 Aligned_cols=112 Identities=20% Similarity=0.241 Sum_probs=72.2
Q ss_pred CCcHHHHHHHHHHhc--CCCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEEEEEcCCHHHHHHHHHHHHHH
Q 007814 165 QPTPIQVQGLPVVLS--GRDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFCLIVCPSRELARQTYEVVEQF 242 (588)
Q Consensus 165 ~p~~~Q~~~i~~il~--g~dvii~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Q~~~~~~~~ 242 (588)
.+|.-|.+++..++. ..-.++.|+-|.|||.+.-+.+- .+ . ..++|.+|+.+-+..+. ++
T Consensus 175 ~~T~dQ~~al~~~~~~~~~~~vlta~RGRGKSa~lG~~~a-~~-~------------~~~~vtAP~~~a~~~l~----~~ 236 (671)
T 2zpa_A 175 APQPEQQQLLKQLMTMPPGVAAVTAARGRGKSALAGQLIS-RI-A------------GRAIVTAPAKASTDVLA----QF 236 (671)
T ss_dssp SCCHHHHHHHHHHTTCCSEEEEEEECTTSSHHHHHHHHHH-HS-S------------SCEEEECSSCCSCHHHH----HH
T ss_pred CCCHHHHHHHHHHHHhhhCeEEEecCCCCCHHHHHHHHHH-HH-H------------hCcEEECCCHHHHHHHH----HH
Confidence 689999999998885 33478889999999955444332 21 1 13699999988766433 22
Q ss_pred hhcccccCCCCceEEEEEcCcchHHHHHHHhcCCcEEEeChHHHHHHHHcccCCCCCcceeEecCcccccccCcHHHHHH
Q 007814 243 LTPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMNLDNCRYLTLDEADRLVDLGFEDDIRE 322 (588)
Q Consensus 243 ~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~L~~~l~~~~~~l~~~~~lViDEah~l~~~~~~~~i~~ 322 (588)
... .|-+..|+.+. . .+..+++||||||=.+. .+.+..
T Consensus 237 ~~~-------------------------------~i~~~~Pd~~~---~----~~~~~dlliVDEAAaIp----~pll~~ 274 (671)
T 2zpa_A 237 AGE-------------------------------KFRFIAPDALL---A----SDEQADWLVVDEAAAIP----APLLHQ 274 (671)
T ss_dssp HGG-------------------------------GCCBCCHHHHH---H----SCCCCSEEEEETGGGSC----HHHHHH
T ss_pred hhC-------------------------------CeEEeCchhhh---h----CcccCCEEEEEchhcCC----HHHHHH
Confidence 210 13344675432 1 23458999999998764 355666
Q ss_pred HHHhhhhcceeEEEeccc
Q 007814 323 VFDHFKAQRQTLLFSATM 340 (588)
Q Consensus 323 i~~~~~~~~q~l~~SAT~ 340 (588)
++..++ .++||.|.
T Consensus 275 ll~~~~----~v~~~tTv 288 (671)
T 2zpa_A 275 LVSRFP----RTLLTTTV 288 (671)
T ss_dssp HHTTSS----EEEEEEEB
T ss_pred HHhhCC----eEEEEecC
Confidence 655432 57777786
No 127
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=94.03 E-value=0.59 Score=42.81 Aligned_cols=39 Identities=21% Similarity=0.301 Sum_probs=23.3
Q ss_pred CCcceeEecCcccccccCcHHHHHHHHHhhhhcceeEEEe
Q 007814 298 DNCRYLTLDEADRLVDLGFEDDIREVFDHFKAQRQTLLFS 337 (588)
Q Consensus 298 ~~~~~lViDEah~l~~~~~~~~i~~i~~~~~~~~q~l~~S 337 (588)
....+|||||+|.+... ....+..++...+....+++.|
T Consensus 101 ~~~~vliiDe~~~l~~~-~~~~l~~~l~~~~~~~~~i~~~ 139 (226)
T 2chg_A 101 APFKIIFLDEADALTAD-AQAALRRTMEMYSKSCRFILSC 139 (226)
T ss_dssp CSCEEEEEETGGGSCHH-HHHHHHHHHHHTTTTEEEEEEE
T ss_pred cCceEEEEeChhhcCHH-HHHHHHHHHHhcCCCCeEEEEe
Confidence 45678999999998643 2234445555544445444444
No 128
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=93.97 E-value=0.21 Score=50.80 Aligned_cols=16 Identities=25% Similarity=0.385 Sum_probs=14.1
Q ss_pred CEEEEecCCchHhHHH
Q 007814 182 DMIGIAFTGSGKTLVF 197 (588)
Q Consensus 182 dvii~a~TGsGKTl~~ 197 (588)
.+++.||+|+|||...
T Consensus 46 ~~li~G~~G~GKTtl~ 61 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTL 61 (389)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred eEEEECCCCCCHHHHH
Confidence 7999999999999654
No 129
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=93.83 E-value=0.16 Score=51.62 Aligned_cols=19 Identities=32% Similarity=0.401 Sum_probs=16.0
Q ss_pred cCCCEEEEecCCchHhHHH
Q 007814 179 SGRDMIGIAFTGSGKTLVF 197 (588)
Q Consensus 179 ~g~dvii~a~TGsGKTl~~ 197 (588)
.++.+++.||+|+|||...
T Consensus 43 ~~~~vll~G~~G~GKT~l~ 61 (387)
T 2v1u_A 43 KPSNALLYGLTGTGKTAVA 61 (387)
T ss_dssp CCCCEEECBCTTSSHHHHH
T ss_pred CCCcEEEECCCCCCHHHHH
Confidence 4578999999999999654
No 130
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=93.67 E-value=0.37 Score=44.09 Aligned_cols=52 Identities=12% Similarity=0.183 Sum_probs=35.2
Q ss_pred CCCcceeEecCcccccccCc--HHHHHHHHHhhhhcceeEEEecccchHHHHHH
Q 007814 297 LDNCRYLTLDEADRLVDLGF--EDDIREVFDHFKAQRQTLLFSATMPTKIQNFA 348 (588)
Q Consensus 297 l~~~~~lViDEah~l~~~~~--~~~i~~i~~~~~~~~q~l~~SAT~~~~i~~~~ 348 (588)
-..+++||+||+-..+..++ .+.+..++..-+...-+|+.+--.|+.+.+.+
T Consensus 118 ~~~yDlvILDEi~~al~~g~l~~~ev~~~l~~Rp~~~~vIlTGr~ap~~l~e~A 171 (196)
T 1g5t_A 118 DPLLDMVVLDELTYMVAYDYLPLEEVISALNARPGHQTVIITGRGCHRDILDLA 171 (196)
T ss_dssp CTTCSEEEEETHHHHHHTTSSCHHHHHHHHHTSCTTCEEEEECSSCCHHHHHHC
T ss_pred cCCCCEEEEeCCCccccCCCCCHHHHHHHHHhCcCCCEEEEECCCCcHHHHHhC
Confidence 36789999999987666553 24555566655555566776667777766554
No 131
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens}
Probab=93.67 E-value=0.56 Score=42.77 Aligned_cols=72 Identities=17% Similarity=0.203 Sum_probs=55.2
Q ss_pred CCEEEEEcCCHHHHHHHHHHHHHHhhcccccCCCCceEEEEEcCcchHHHHHHH---h-cCCcEEEeChHHHHHHHHccc
Q 007814 219 GPFCLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVV---K-RGVHIVVATPGRLKDMLAKKK 294 (588)
Q Consensus 219 ~~~~Lil~Ptr~La~Q~~~~~~~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l---~-~~~~IvV~Tp~~L~~~l~~~~ 294 (588)
++++||.|+++.-+..+.+.+... ++.+..++|+.+..++...+ . ....|+|+| +.+. .+
T Consensus 54 ~~~~lVF~~~~~~~~~l~~~L~~~----------g~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLvaT-----~~~~-~G 117 (191)
T 2p6n_A 54 PPPVLIFAEKKADVDAIHEYLLLK----------GVEAVAIHGGKDQEERTKAIEAFREGKKDVLVAT-----DVAS-KG 117 (191)
T ss_dssp CSCEEEECSCHHHHHHHHHHHHHH----------TCCEEEECTTSCHHHHHHHHHHHHHTSCSEEEEC-----HHHH-TT
T ss_pred CCCEEEEECCHHHHHHHHHHHHHc----------CCcEEEEeCCCCHHHHHHHHHHHhcCCCEEEEEc-----Cchh-cC
Confidence 457999999999999988888776 78899999998776554433 2 358999999 5554 46
Q ss_pred CCCCCcceeEec
Q 007814 295 MNLDNCRYLTLD 306 (588)
Q Consensus 295 ~~l~~~~~lViD 306 (588)
+++..+++||.=
T Consensus 118 ldi~~v~~VI~~ 129 (191)
T 2p6n_A 118 LDFPAIQHVINY 129 (191)
T ss_dssp CCCCCCSEEEES
T ss_pred CCcccCCEEEEe
Confidence 678888888763
No 132
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=93.54 E-value=0.26 Score=43.97 Aligned_cols=18 Identities=28% Similarity=0.324 Sum_probs=15.3
Q ss_pred CCCEEEEecCCchHhHHH
Q 007814 180 GRDMIGIAFTGSGKTLVF 197 (588)
Q Consensus 180 g~dvii~a~TGsGKTl~~ 197 (588)
.+++++.+|+|+|||...
T Consensus 43 ~~~vll~G~~G~GKT~la 60 (187)
T 2p65_A 43 KNNPILLGDPGVGKTAIV 60 (187)
T ss_dssp SCEEEEESCGGGCHHHHH
T ss_pred CCceEEECCCCCCHHHHH
Confidence 568999999999999654
No 133
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis}
Probab=93.45 E-value=0.49 Score=41.77 Aligned_cols=74 Identities=19% Similarity=0.351 Sum_probs=55.4
Q ss_pred CCCEEEEEcCCHHHHHHHHHHHHHHhhcccccCCCCceEEEEEcCcchHHHHHHH---h-cCCcEEEeChHHHHHHHHcc
Q 007814 218 EGPFCLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVV---K-RGVHIVVATPGRLKDMLAKK 293 (588)
Q Consensus 218 ~~~~~Lil~Ptr~La~Q~~~~~~~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l---~-~~~~IvV~Tp~~L~~~l~~~ 293 (588)
.+.++||.|+++.-+..+.+.+... ++.+..++|+.+..++...+ . ...+|+|+| +.+ ..
T Consensus 34 ~~~~~lVF~~~~~~~~~l~~~L~~~----------~~~~~~~hg~~~~~~r~~~~~~f~~g~~~vlv~T-----~~~-~~ 97 (163)
T 2hjv_A 34 NPDSCIIFCRTKEHVNQLTDELDDL----------GYPCDKIHGGMIQEDRFDVMNEFKRGEYRYLVAT-----DVA-AR 97 (163)
T ss_dssp CCSSEEEECSSHHHHHHHHHHHHHT----------TCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEEC-----GGG-TT
T ss_pred CCCcEEEEECCHHHHHHHHHHHHHc----------CCcEEEEeCCCCHHHHHHHHHHHHcCCCeEEEEC-----Chh-hc
Confidence 3457999999999999988888775 67899999998766554433 2 357899999 343 34
Q ss_pred cCCCCCcceeEecC
Q 007814 294 KMNLDNCRYLTLDE 307 (588)
Q Consensus 294 ~~~l~~~~~lViDE 307 (588)
++++..+++||.-.
T Consensus 98 Gld~~~~~~Vi~~~ 111 (163)
T 2hjv_A 98 GIDIENISLVINYD 111 (163)
T ss_dssp TCCCSCCSEEEESS
T ss_pred CCchhcCCEEEEeC
Confidence 67778888887644
No 134
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=93.33 E-value=0.16 Score=56.90 Aligned_cols=75 Identities=15% Similarity=0.195 Sum_probs=65.0
Q ss_pred CCCCEEEEeCccccHHHHHHHHHHc----CCcEEEEeCCCCHHHHHHHHHHHhcCCcEEEEEcCcc-ccCCCCCCcceEE
Q 007814 393 TPPPVLIFCENKADVDDIHEYLLLK----GVEAVAVHGGKDQEEREYAISSFKAGKKDVLVATDVA-SKGLDFPDIQHVI 467 (588)
Q Consensus 393 ~~~~viIF~~s~~~~~~l~~~L~~~----g~~~~~ihg~~~~~~R~~~~~~f~~g~~~vLVaT~~~-~~GlDip~v~~VI 467 (588)
.+.+++|.++++.-+..+++.+... |+.+..+||+++..+|...+..+.+|..+|+|+|... ...+++.++.+||
T Consensus 416 ~g~qvlvlaPtr~La~Q~~~~l~~~~~~~gi~v~~l~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~~~~~~~l~lVV 495 (780)
T 1gm5_A 416 AGFQTAFMVPTSILAIQHYRRTVESFSKFNIHVALLIGATTPSEKEKIKSGLRNGQIDVVIGTHALIQEDVHFKNLGLVI 495 (780)
T ss_dssp HTSCEEEECSCHHHHHHHHHHHHHHHTCSSCCEEECCSSSCHHHHHHHHHHHHSSCCCEEEECTTHHHHCCCCSCCCEEE
T ss_pred cCCeEEEEeCcHHHHHHHHHHHHHHhhhcCceEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhhhhhccCCceEE
Confidence 3579999999999888888777654 7999999999999999999999999999999999754 4567888888887
No 135
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=93.16 E-value=0.35 Score=48.42 Aligned_cols=33 Identities=18% Similarity=0.276 Sum_probs=25.0
Q ss_pred CcHHHHHHHHHHh----cCC---CEEEEecCCchHhHHHH
Q 007814 166 PTPIQVQGLPVVL----SGR---DMIGIAFTGSGKTLVFV 198 (588)
Q Consensus 166 p~~~Q~~~i~~il----~g~---dvii~a~TGsGKTl~~~ 198 (588)
++|+|.+++..+. +|+ .+++.||.|+|||.+..
T Consensus 3 ~~pw~~~~~~~l~~~i~~~~~~~a~L~~G~~G~GKt~~a~ 42 (334)
T 1a5t_A 3 WYPWLRPDFEKLVASYQAGRGHHALLIQALPGMGDDALIY 42 (334)
T ss_dssp CCGGGHHHHHHHHHHHHTTCCCSEEEEECCTTSCHHHHHH
T ss_pred CCCchHHHHHHHHHHHHcCCcceeEEEECCCCchHHHHHH
Confidence 4788888877655 443 38999999999996654
No 136
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=92.93 E-value=0.73 Score=47.85 Aligned_cols=53 Identities=13% Similarity=0.220 Sum_probs=31.7
Q ss_pred CcceeEecCccccccc-CcHHHHHHHHHhhhhcceeEEEecccchHHHHHHHHh
Q 007814 299 NCRYLTLDEADRLVDL-GFEDDIREVFDHFKAQRQTLLFSATMPTKIQNFARSA 351 (588)
Q Consensus 299 ~~~~lViDEah~l~~~-~~~~~i~~i~~~~~~~~q~l~~SAT~~~~i~~~~~~~ 351 (588)
.++++|||.+-++... .....+..+.....+..-++.+.||........+..+
T Consensus 182 ~~DvVIIDTaGrl~~d~~lm~el~~i~~~~~pd~vlLVvDA~~gq~a~~~a~~f 235 (443)
T 3dm5_A 182 GVDIIIVDTAGRHKEDKALIEEMKQISNVIHPHEVILVIDGTIGQQAYNQALAF 235 (443)
T ss_dssp TCSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGGGGHHHHHHHH
T ss_pred CCCEEEEECCCcccchHHHHHHHHHHHHhhcCceEEEEEeCCCchhHHHHHHHH
Confidence 4678999988665421 1223455555555555557778888766555555444
No 137
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=92.92 E-value=0.23 Score=49.32 Aligned_cols=40 Identities=13% Similarity=0.238 Sum_probs=24.6
Q ss_pred CCcceeEecCcccccccCcHHHHHHHHHhhhhcceeEEEe
Q 007814 298 DNCRYLTLDEADRLVDLGFEDDIREVFDHFKAQRQTLLFS 337 (588)
Q Consensus 298 ~~~~~lViDEah~l~~~~~~~~i~~i~~~~~~~~q~l~~S 337 (588)
...++|+|||+|.+........+..++...+...++|+.|
T Consensus 104 ~~~~vliiDEi~~l~~~~~~~~L~~~le~~~~~~~iI~~~ 143 (324)
T 3u61_B 104 GRQKVIVIDEFDRSGLAESQRHLRSFMEAYSSNCSIIITA 143 (324)
T ss_dssp SCEEEEEEESCCCGGGHHHHHHHHHHHHHHGGGCEEEEEE
T ss_pred CCCeEEEEECCcccCcHHHHHHHHHHHHhCCCCcEEEEEe
Confidence 3678999999999862222344555555555555555533
No 138
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=92.83 E-value=0.25 Score=50.16 Aligned_cols=18 Identities=33% Similarity=0.416 Sum_probs=15.1
Q ss_pred CCCEEEEecCCchHhHHH
Q 007814 180 GRDMIGIAFTGSGKTLVF 197 (588)
Q Consensus 180 g~dvii~a~TGsGKTl~~ 197 (588)
.+.+++.||+|+|||...
T Consensus 45 ~~~vll~G~~G~GKT~la 62 (384)
T 2qby_B 45 KFSNLFLGLTGTGKTFVS 62 (384)
T ss_dssp CCEEEEEECTTSSHHHHH
T ss_pred CCcEEEECCCCCCHHHHH
Confidence 457999999999999654
No 139
>3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A
Probab=92.48 E-value=0.72 Score=42.74 Aligned_cols=72 Identities=10% Similarity=0.172 Sum_probs=55.5
Q ss_pred CCCEEEEEcCCHHHHHHHHHHHHHHhhcccccCCCCceEEEEEcCcchHHHHHHH---h-cCCcEEEeChHHHHHHHHcc
Q 007814 218 EGPFCLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVV---K-RGVHIVVATPGRLKDMLAKK 293 (588)
Q Consensus 218 ~~~~~Lil~Ptr~La~Q~~~~~~~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l---~-~~~~IvV~Tp~~L~~~l~~~ 293 (588)
.+.++||.|+++.-+..+.+.+... ++.+..++|+.+..++...+ . ...+|+||| +.+ ..
T Consensus 30 ~~~~~lVF~~~~~~~~~l~~~L~~~----------~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vlvaT-----~~~-~~ 93 (212)
T 3eaq_A 30 SPDRAMVFTRTKAETEEIAQGLLRL----------GHPAQALHGDLSQGERERVLGAFRQGEVRVLVAT-----DVA-AR 93 (212)
T ss_dssp CCSCEEEECSSHHHHHHHHHHHHHH----------TCCEEEECSSSCHHHHHHHHHHHHSSSCCEEEEC-----TTT-TC
T ss_pred CCCeEEEEeCCHHHHHHHHHHHHHc----------CCCEEEEECCCCHHHHHHHHHHHHCCCCeEEEec-----Chh-hc
Confidence 3567999999999999988888776 77899999998876665444 2 357899999 444 35
Q ss_pred cCCCCCcceeEe
Q 007814 294 KMNLDNCRYLTL 305 (588)
Q Consensus 294 ~~~l~~~~~lVi 305 (588)
++++..+++||.
T Consensus 94 Gidi~~v~~Vi~ 105 (212)
T 3eaq_A 94 GLDIPQVDLVVH 105 (212)
T ss_dssp SSSCCCBSEEEE
T ss_pred CCCCccCcEEEE
Confidence 677888888774
No 140
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=92.39 E-value=0.11 Score=50.69 Aligned_cols=55 Identities=16% Similarity=0.256 Sum_probs=31.7
Q ss_pred CCCCCCCCCCCHHHHHHHHHCCCCCCcHHHHHHHHH--HhcCCCEEEEecCCchHhHHH
Q 007814 141 PIKNFKDMRFPEPILKKLKAKGIVQPTPIQVQGLPV--VLSGRDMIGIAFTGSGKTLVF 197 (588)
Q Consensus 141 p~~~f~~~~l~~~l~~~l~~~g~~~p~~~Q~~~i~~--il~g~dvii~a~TGsGKTl~~ 197 (588)
|-.+|+++.-....++.|... +..+. ...+.+.. +..++.+++.||+|+|||...
T Consensus 12 ~~~~~~~i~G~~~~~~~l~~~-~~~~~-~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la 68 (285)
T 3h4m_A 12 PNVRYEDIGGLEKQMQEIREV-VELPL-KHPELFEKVGIEPPKGILLYGPPGTGKTLLA 68 (285)
T ss_dssp CCCCGGGSCSCHHHHHHHHHH-THHHH-HCHHHHHHHCCCCCSEEEEESSSSSSHHHHH
T ss_pred CCCCHHHhcCHHHHHHHHHHH-HHHHh-hCHHHHHhcCCCCCCeEEEECCCCCcHHHHH
Confidence 345678877666666666543 11000 00111111 124678999999999999654
No 141
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19
Probab=92.39 E-value=0.77 Score=40.51 Aligned_cols=74 Identities=9% Similarity=0.209 Sum_probs=55.0
Q ss_pred CCCEEEEEcCCHHHHHHHHHHHHHHhhcccccCCCCceEEEEEcCcchHHHHHHH---h-cCCcEEEeChHHHHHHHHcc
Q 007814 218 EGPFCLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVV---K-RGVHIVVATPGRLKDMLAKK 293 (588)
Q Consensus 218 ~~~~~Lil~Ptr~La~Q~~~~~~~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l---~-~~~~IvV~Tp~~L~~~l~~~ 293 (588)
.+.++||.|+++.-+..+.+.+... ++.+..++|+.+..++...+ . ....|+||| +.+ ..
T Consensus 29 ~~~~~lVF~~~~~~~~~l~~~L~~~----------~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T-----~~~-~~ 92 (165)
T 1fuk_A 29 SVTQAVIFCNTRRKVEELTTKLRND----------KFTVSAIYSDLPQQERDTIMKEFRSGSSRILIST-----DLL-AR 92 (165)
T ss_dssp TCSCEEEEESSHHHHHHHHHHHHHT----------TCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEEE-----GGG-TT
T ss_pred CCCCEEEEECCHHHHHHHHHHHHHc----------CCCEEEEECCCCHHHHHHHHHHHHcCCCEEEEEc-----Chh-hc
Confidence 3567999999999999988887765 67889999998766654433 2 357899999 333 34
Q ss_pred cCCCCCcceeEecC
Q 007814 294 KMNLDNCRYLTLDE 307 (588)
Q Consensus 294 ~~~l~~~~~lViDE 307 (588)
++++..+++||.-.
T Consensus 93 G~d~~~~~~Vi~~~ 106 (165)
T 1fuk_A 93 GIDVQQVSLVINYD 106 (165)
T ss_dssp TCCCCSCSEEEESS
T ss_pred CCCcccCCEEEEeC
Confidence 66777888877643
No 142
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens}
Probab=92.38 E-value=0.54 Score=41.97 Aligned_cols=72 Identities=11% Similarity=0.188 Sum_probs=54.7
Q ss_pred CCCEEEEEcCCHHHHHHHHHHHHHHhhcccccCCCCceEEEEEcCcchHHHHHHH---h-cCCcEEEeChHHHHHHHHcc
Q 007814 218 EGPFCLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVV---K-RGVHIVVATPGRLKDMLAKK 293 (588)
Q Consensus 218 ~~~~~Lil~Ptr~La~Q~~~~~~~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l---~-~~~~IvV~Tp~~L~~~l~~~ 293 (588)
.+.++||.|+++..+..+.+.+... ++.+..++|+.+..++...+ . ...+|+||| +.+ ..
T Consensus 33 ~~~~~lVF~~~~~~~~~l~~~L~~~----------~~~~~~~~g~~~~~~R~~~~~~f~~g~~~vLvaT-----~~~-~~ 96 (175)
T 2rb4_A 33 TIGQAIIFCQTRRNAKWLTVEMIQD----------GHQVSLLSGELTVEQRASIIQRFRDGKEKVLITT-----NVC-AR 96 (175)
T ss_dssp CCSEEEEECSCHHHHHHHHHHHHTT----------TCCEEEECSSCCHHHHHHHHHHHHTTSCSEEEEC-----CSC-CT
T ss_pred CCCCEEEEECCHHHHHHHHHHHHHc----------CCcEEEEeCCCCHHHHHHHHHHHHcCCCeEEEEe-----cch-hc
Confidence 4568999999999999888877664 67899999998776654443 2 357999999 333 35
Q ss_pred cCCCCCcceeEe
Q 007814 294 KMNLDNCRYLTL 305 (588)
Q Consensus 294 ~~~l~~~~~lVi 305 (588)
++++..+++||.
T Consensus 97 Gid~~~~~~Vi~ 108 (175)
T 2rb4_A 97 GIDVKQVTIVVN 108 (175)
T ss_dssp TTCCTTEEEEEE
T ss_pred CCCcccCCEEEE
Confidence 677888888885
No 143
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=92.22 E-value=0.84 Score=47.79 Aligned_cols=24 Identities=21% Similarity=-0.004 Sum_probs=17.5
Q ss_pred cCCCEEEEecCCchHhHHHHHHHH
Q 007814 179 SGRDMIGIAFTGSGKTLVFVLPMI 202 (588)
Q Consensus 179 ~g~dvii~a~TGsGKTl~~~lp~l 202 (588)
.|.-+++.|++|+|||...+--+.
T Consensus 202 ~G~liiI~G~pG~GKTtl~l~ia~ 225 (454)
T 2r6a_A 202 RSDLIIVAARPSVGKTAFALNIAQ 225 (454)
T ss_dssp TTCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHH
Confidence 456788889999999965444333
No 144
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=92.19 E-value=0.5 Score=47.14 Aligned_cols=17 Identities=24% Similarity=0.212 Sum_probs=15.0
Q ss_pred CCEEEEecCCchHhHHH
Q 007814 181 RDMIGIAFTGSGKTLVF 197 (588)
Q Consensus 181 ~dvii~a~TGsGKTl~~ 197 (588)
.++++.||+|+|||..+
T Consensus 56 ~~vll~G~~GtGKT~la 72 (338)
T 3pfi_A 56 DHILFSGPAGLGKTTLA 72 (338)
T ss_dssp CCEEEECSTTSSHHHHH
T ss_pred CeEEEECcCCCCHHHHH
Confidence 58999999999999664
No 145
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=92.08 E-value=1.2 Score=41.78 Aligned_cols=50 Identities=16% Similarity=0.040 Sum_probs=29.9
Q ss_pred cCCCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEEEEEcCCHHHHHHHHHHHH
Q 007814 179 SGRDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFCLIVCPSRELARQTYEVVE 240 (588)
Q Consensus 179 ~g~dvii~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Q~~~~~~ 240 (588)
.|.-+++.+++|+|||...+--+... .. .+..++++.-. ....++.+.+.
T Consensus 22 ~G~~~~i~G~~GsGKTtl~~~~~~~~-~~----------~~~~v~~~~~e-~~~~~~~~~~~ 71 (247)
T 2dr3_A 22 ERNVVLLSGGPGTGKTIFSQQFLWNG-LK----------MGEPGIYVALE-EHPVQVRQNMA 71 (247)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHHHHH-HH----------TTCCEEEEESS-SCHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHH-Hh----------cCCeEEEEEcc-CCHHHHHHHHH
Confidence 56778999999999996643333322 22 24456776643 33455555554
No 146
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=92.05 E-value=0.34 Score=49.02 Aligned_cols=18 Identities=33% Similarity=0.499 Sum_probs=15.5
Q ss_pred CCCEEEEecCCchHhHHH
Q 007814 180 GRDMIGIAFTGSGKTLVF 197 (588)
Q Consensus 180 g~dvii~a~TGsGKTl~~ 197 (588)
++.+++.||+|+|||...
T Consensus 45 ~~~vli~G~~G~GKTtl~ 62 (386)
T 2qby_A 45 PNNIFIYGLTGTGKTAVV 62 (386)
T ss_dssp CCCEEEEECTTSSHHHHH
T ss_pred CCeEEEECCCCCCHHHHH
Confidence 578999999999999654
No 147
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=91.98 E-value=0.22 Score=49.04 Aligned_cols=19 Identities=32% Similarity=0.235 Sum_probs=15.7
Q ss_pred CCCEEEEecCCchHhHHHH
Q 007814 180 GRDMIGIAFTGSGKTLVFV 198 (588)
Q Consensus 180 g~dvii~a~TGsGKTl~~~ 198 (588)
+.++++.||+|+|||.++.
T Consensus 67 ~~~vll~G~~GtGKT~la~ 85 (309)
T 3syl_A 67 TLHMSFTGNPGTGKTTVAL 85 (309)
T ss_dssp CCEEEEEECTTSSHHHHHH
T ss_pred CceEEEECCCCCCHHHHHH
Confidence 3579999999999996643
No 148
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=91.89 E-value=0.4 Score=49.36 Aligned_cols=76 Identities=17% Similarity=0.138 Sum_probs=63.4
Q ss_pred cCCCCEEEEeCccccHHHHHHHHHH---cCCcEEEEeCCCCHHHHHHHHHHHhcCCcEEEEEcCccc----cCCCCCCcc
Q 007814 392 KTPPPVLIFCENKADVDDIHEYLLL---KGVEAVAVHGGKDQEEREYAISSFKAGKKDVLVATDVAS----KGLDFPDIQ 464 (588)
Q Consensus 392 ~~~~~viIF~~s~~~~~~l~~~L~~---~g~~~~~ihg~~~~~~R~~~~~~f~~g~~~vLVaT~~~~----~GlDip~v~ 464 (588)
..++++||.+|++.-+..+++.+.. .++.+..+||+.+..++....+.+..|..+|+|+|.-.- .-+++.+++
T Consensus 62 ~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~l~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~ 141 (414)
T 3oiy_A 62 RKGKKSALVFPTVTLVKQTLERLQKLADEKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREKLSQKRFD 141 (414)
T ss_dssp TTTCCEEEEESSHHHHHHHHHHHHHHCCSSCCEEECCTTSCHHHHHHHHHHHHHTCCSEEEEEHHHHHHCHHHHTTCCCS
T ss_pred cCCCEEEEEECCHHHHHHHHHHHHHHccCCceEEEEECCCChhhHHHHHHHhhcCCCCEEEECHHHHHHHHHHhcccccc
Confidence 4667999999999999999999988 588999999999999999999999999999999996322 114455677
Q ss_pred eEE
Q 007814 465 HVI 467 (588)
Q Consensus 465 ~VI 467 (588)
+||
T Consensus 142 ~iV 144 (414)
T 3oiy_A 142 FVF 144 (414)
T ss_dssp EEE
T ss_pred EEE
Confidence 766
No 149
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19
Probab=91.62 E-value=0.7 Score=41.21 Aligned_cols=74 Identities=15% Similarity=0.134 Sum_probs=55.0
Q ss_pred CCCEEEEEcCCHHHHHHHHHHHHHHhhcccccCCCCceEEEEEcCcchHHHHHHH---h-cCCcEEEeChHHHHHHHHcc
Q 007814 218 EGPFCLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVV---K-RGVHIVVATPGRLKDMLAKK 293 (588)
Q Consensus 218 ~~~~~Lil~Ptr~La~Q~~~~~~~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l---~-~~~~IvV~Tp~~L~~~l~~~ 293 (588)
.+.++||.|+++.-+..+++.+... ++.+..++|+.+..++...+ . ....|+|||. .+ ..
T Consensus 30 ~~~~~lVF~~~~~~~~~l~~~L~~~----------~~~~~~~hg~~~~~~r~~~~~~f~~g~~~vLvaT~-----~~-~~ 93 (172)
T 1t5i_A 30 EFNQVVIFVKSVQRCIALAQLLVEQ----------NFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATN-----LF-GR 93 (172)
T ss_dssp CCSSEEEECSSHHHHHHHHHHHHHT----------TCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEESS-----CC-ST
T ss_pred CCCcEEEEECCHHHHHHHHHHHHhc----------CCCEEEEECCCCHHHHHHHHHHHHCCCCcEEEECC-----ch-hc
Confidence 3557999999999999988888775 67889999998776654433 2 3578999993 33 34
Q ss_pred cCCCCCcceeEecC
Q 007814 294 KMNLDNCRYLTLDE 307 (588)
Q Consensus 294 ~~~l~~~~~lViDE 307 (588)
++++..+++||.-+
T Consensus 94 Gldi~~~~~Vi~~d 107 (172)
T 1t5i_A 94 GMDIERVNIAFNYD 107 (172)
T ss_dssp TCCGGGCSEEEESS
T ss_pred CcchhhCCEEEEEC
Confidence 66777788877644
No 150
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=91.53 E-value=0.83 Score=47.67 Aligned_cols=116 Identities=16% Similarity=0.029 Sum_probs=55.7
Q ss_pred cCCCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEEEEEcCCHHHHHHHHHHHHHHhhcccccCCCCceEEE
Q 007814 179 SGRDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFCLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLL 258 (588)
Q Consensus 179 ~g~dvii~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Q~~~~~~~~~~~~~~~~~~~i~~~~ 258 (588)
.|.=+++.|++|+|||...+--+...+.. .+..++|+..- .-..|+..++......+ ....++
T Consensus 199 ~G~l~ii~G~pg~GKT~lal~ia~~~a~~----------~g~~vl~~slE-~~~~~l~~R~~~~~~~i---~~~~l~--- 261 (444)
T 2q6t_A 199 PGSLNIIAARPAMGKTAFALTIAQNAALK----------EGVGVGIYSLE-MPAAQLTLRMMCSEARI---DMNRVR--- 261 (444)
T ss_dssp TTCEEEEEECTTSCHHHHHHHHHHHHHHT----------TCCCEEEEESS-SCHHHHHHHHHHHHTTC---CTTTCC---
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHHh----------CCCeEEEEECC-CCHHHHHHHHHHHHcCC---CHHHHh---
Confidence 45667888999999995544433333221 24457776543 22344444443221111 011121
Q ss_pred EEcCcchHHH------HHHHhcCCcEEEe-----ChHHHHHHHHcccCCCCCcceeEecCccccccc
Q 007814 259 CIGGVDMRSQ------LEVVKRGVHIVVA-----TPGRLKDMLAKKKMNLDNCRYLTLDEADRLVDL 314 (588)
Q Consensus 259 ~~gg~~~~~~------~~~l~~~~~IvV~-----Tp~~L~~~l~~~~~~l~~~~~lViDEah~l~~~ 314 (588)
.|..+..+. ...+.. ..+.+- |+..+...+.+-.. -..+++||||..+.|...
T Consensus 262 -~g~l~~~~~~~~~~a~~~l~~-~~l~i~d~~~~s~~~l~~~~~~l~~-~~~~~lIvID~l~~~~~~ 325 (444)
T 2q6t_A 262 -LGQLTDRDFSRLVDVASRLSE-APIYIDDTPDLTLMEVRARARRLVS-QNQVGLIIIDYLQLMSGP 325 (444)
T ss_dssp -GGGCCHHHHHHHHHHHHHHHT-SCEEEECCTTCBHHHHHHHHHHHHH-HSCCCEEEEECGGGCBCC
T ss_pred -CCCCCHHHHHHHHHHHHHHhc-CCEEEECCCCCCHHHHHHHHHHHHH-HcCCCEEEEcChhhcCCC
Confidence 122221111 111222 345553 44555443332110 125789999999998753
No 151
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=90.67 E-value=0.63 Score=46.66 Aligned_cols=42 Identities=12% Similarity=0.357 Sum_probs=25.7
Q ss_pred CCcceeEecCcccccccCcHHHHHHHHHhhhhcceeEEEeccc
Q 007814 298 DNCRYLTLDEADRLVDLGFEDDIREVFDHFKAQRQTLLFSATM 340 (588)
Q Consensus 298 ~~~~~lViDEah~l~~~~~~~~i~~i~~~~~~~~q~l~~SAT~ 340 (588)
...+++|+||+|.| +......+..++...+....+|+.|..+
T Consensus 133 ~~~~vlilDE~~~L-~~~~~~~L~~~le~~~~~~~~Il~t~~~ 174 (354)
T 1sxj_E 133 HRYKCVIINEANSL-TKDAQAALRRTMEKYSKNIRLIMVCDSM 174 (354)
T ss_dssp -CCEEEEEECTTSS-CHHHHHHHHHHHHHSTTTEEEEEEESCS
T ss_pred CCCeEEEEeCcccc-CHHHHHHHHHHHHhhcCCCEEEEEeCCH
Confidence 46779999999994 3333355566666655555555555443
No 152
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=90.28 E-value=1.5 Score=40.63 Aligned_cols=20 Identities=25% Similarity=0.248 Sum_probs=15.9
Q ss_pred cCCCEEEEecCCchHhHHHH
Q 007814 179 SGRDMIGIAFTGSGKTLVFV 198 (588)
Q Consensus 179 ~g~dvii~a~TGsGKTl~~~ 198 (588)
.|.-+++.+|+|+|||....
T Consensus 22 ~G~~~~i~G~~GsGKTtl~~ 41 (235)
T 2w0m_A 22 QGFFIALTGEPGTGKTIFSL 41 (235)
T ss_dssp TTCEEEEECSTTSSHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHH
Confidence 46778889999999995543
No 153
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=90.18 E-value=1.2 Score=43.88 Aligned_cols=42 Identities=24% Similarity=0.415 Sum_probs=24.2
Q ss_pred CCcceeEecCcccccccCcHHHHHHHHHhhhhcceeEEEecccc
Q 007814 298 DNCRYLTLDEADRLVDLGFEDDIREVFDHFKAQRQTLLFSATMP 341 (588)
Q Consensus 298 ~~~~~lViDEah~l~~~~~~~~i~~i~~~~~~~~q~l~~SAT~~ 341 (588)
....+||+||+|.+.... ...+..++...+....+++ +++.+
T Consensus 109 ~~~~vliiDe~~~l~~~~-~~~L~~~le~~~~~~~~i~-~~~~~ 150 (327)
T 1iqp_A 109 ASFKIIFLDEADALTQDA-QQALRRTMEMFSSNVRFIL-SCNYS 150 (327)
T ss_dssp CSCEEEEEETGGGSCHHH-HHHHHHHHHHTTTTEEEEE-EESCG
T ss_pred CCCeEEEEeCCCcCCHHH-HHHHHHHHHhcCCCCeEEE-EeCCc
Confidence 456799999999986432 2334444444444444444 44443
No 154
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=89.90 E-value=1.3 Score=44.17 Aligned_cols=39 Identities=18% Similarity=0.352 Sum_probs=23.2
Q ss_pred CCcceeEecCcccccccCcHHHHHHHHHhhhhcceeEEEe
Q 007814 298 DNCRYLTLDEADRLVDLGFEDDIREVFDHFKAQRQTLLFS 337 (588)
Q Consensus 298 ~~~~~lViDEah~l~~~~~~~~i~~i~~~~~~~~q~l~~S 337 (588)
....+|++||+|.+.... ...+..++...+....+++.+
T Consensus 132 ~~~~vliiDE~~~l~~~~-~~~Ll~~le~~~~~~~~il~~ 170 (353)
T 1sxj_D 132 PPYKIIILDEADSMTADA-QSALRRTMETYSGVTRFCLIC 170 (353)
T ss_dssp CSCEEEEETTGGGSCHHH-HHHHHHHHHHTTTTEEEEEEE
T ss_pred CCceEEEEECCCccCHHH-HHHHHHHHHhcCCCceEEEEe
Confidence 355799999999986432 234444555444444455544
No 155
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=89.89 E-value=0.74 Score=48.11 Aligned_cols=17 Identities=35% Similarity=0.366 Sum_probs=14.7
Q ss_pred CCEEEEecCCchHhHHH
Q 007814 181 RDMIGIAFTGSGKTLVF 197 (588)
Q Consensus 181 ~dvii~a~TGsGKTl~~ 197 (588)
.++++.+|+|+|||.+.
T Consensus 51 ~~vLL~GppGtGKTtlA 67 (447)
T 3pvs_A 51 HSMILWGPPGTGKTTLA 67 (447)
T ss_dssp CEEEEECSTTSSHHHHH
T ss_pred cEEEEECCCCCcHHHHH
Confidence 47999999999999664
No 156
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=89.84 E-value=2 Score=40.13 Aligned_cols=22 Identities=18% Similarity=0.012 Sum_probs=17.1
Q ss_pred cCCCEEEEecCCchHhHHHHHH
Q 007814 179 SGRDMIGIAFTGSGKTLVFVLP 200 (588)
Q Consensus 179 ~g~dvii~a~TGsGKTl~~~lp 200 (588)
.|.-+.+.+|+|+|||......
T Consensus 23 ~G~~~~i~G~~GsGKTtl~~~l 44 (243)
T 1n0w_A 23 TGSITEMFGEFRTGKTQICHTL 44 (243)
T ss_dssp TTSEEEEECCTTSSHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHH
Confidence 4677889999999999665443
No 157
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=89.45 E-value=1.2 Score=43.88 Aligned_cols=44 Identities=7% Similarity=0.196 Sum_probs=24.7
Q ss_pred CCCcceeEecCcccccccCcHHHHHHHHHhhhhcceeEEEecccch
Q 007814 297 LDNCRYLTLDEADRLVDLGFEDDIREVFDHFKAQRQTLLFSATMPT 342 (588)
Q Consensus 297 l~~~~~lViDEah~l~~~~~~~~i~~i~~~~~~~~q~l~~SAT~~~ 342 (588)
....+++||||||.|..... +.+.+.+..-++.. ++++.++-+.
T Consensus 80 ~~~~kvviIdead~lt~~a~-naLLk~LEep~~~t-~fIl~t~~~~ 123 (305)
T 2gno_A 80 LYTRKYVIVHDCERMTQQAA-NAFLKALEEPPEYA-VIVLNTRRWH 123 (305)
T ss_dssp SSSSEEEEETTGGGBCHHHH-HHTHHHHHSCCTTE-EEEEEESCGG
T ss_pred cCCceEEEeccHHHhCHHHH-HHHHHHHhCCCCCe-EEEEEECChH
Confidence 34678999999999875332 33344444333333 3444444443
No 158
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens}
Probab=89.41 E-value=1 Score=40.61 Aligned_cols=72 Identities=14% Similarity=0.175 Sum_probs=44.9
Q ss_pred CCCEEEEEcCCHHHHHHHHHHHHHHhhcccccCCCCceEEEEEcCcchHHHHHH---Hh-cCCcEEEeChHHHHHHHHcc
Q 007814 218 EGPFCLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEV---VK-RGVHIVVATPGRLKDMLAKK 293 (588)
Q Consensus 218 ~~~~~Lil~Ptr~La~Q~~~~~~~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~---l~-~~~~IvV~Tp~~L~~~l~~~ 293 (588)
.+.++||.|+++.-+..+.+.+... ++.+..++|+.+..++... +. ....|+|+| +.+ ..
T Consensus 45 ~~~k~lVF~~~~~~~~~l~~~L~~~----------g~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLvaT-----~~~-~~ 108 (185)
T 2jgn_A 45 KDSLTLVFVETKKGADSLEDFLYHE----------GYACTSIHGDRSQRDREEALHQFRSGKSPILVAT-----AVA-AR 108 (185)
T ss_dssp CCSCEEEEESCHHHHHHHHHHHHHT----------TCCEEEEC--------CHHHHHHHHTSSSEEEEE-----C-----
T ss_pred CCCeEEEEECCHHHHHHHHHHHHHc----------CCceEEEeCCCCHHHHHHHHHHHHcCCCeEEEEc-----Chh-hc
Confidence 4567999999999999988877764 6788999998765544332 22 357899999 343 34
Q ss_pred cCCCCCcceeEe
Q 007814 294 KMNLDNCRYLTL 305 (588)
Q Consensus 294 ~~~l~~~~~lVi 305 (588)
++++..+++||.
T Consensus 109 Gldi~~~~~VI~ 120 (185)
T 2jgn_A 109 GLDISNVKHVIN 120 (185)
T ss_dssp --CCCSBSEEEE
T ss_pred CCCcccCCEEEE
Confidence 567778888776
No 159
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=89.19 E-value=0.46 Score=47.58 Aligned_cols=50 Identities=16% Similarity=-0.021 Sum_probs=29.6
Q ss_pred cCCCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEEEEEcCCHHHHHHHHHHHH
Q 007814 179 SGRDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFCLIVCPSRELARQTYEVVE 240 (588)
Q Consensus 179 ~g~dvii~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Q~~~~~~ 240 (588)
.|.=+++.|++|+|||...+-.+...+ . .+..++|+..- .-..|+..++.
T Consensus 45 ~G~LiiIaG~pG~GKTt~al~ia~~~a-~----------~g~~Vl~fSlE-ms~~ql~~Rll 94 (338)
T 4a1f_A 45 KGSLVIIGARPSMGKTSLMMNMVLSAL-N----------DDRGVAVFSLE-MSAEQLALRAL 94 (338)
T ss_dssp TTCEEEEEECTTSCHHHHHHHHHHHHH-H----------TTCEEEEEESS-SCHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHH-H----------cCCeEEEEeCC-CCHHHHHHHHH
Confidence 456678889999999965444333332 2 24567777642 33445554443
No 160
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=89.17 E-value=0.77 Score=45.34 Aligned_cols=18 Identities=22% Similarity=0.194 Sum_probs=15.5
Q ss_pred CCCEEEEecCCchHhHHH
Q 007814 180 GRDMIGIAFTGSGKTLVF 197 (588)
Q Consensus 180 g~dvii~a~TGsGKTl~~ 197 (588)
...+++.||+|+|||..+
T Consensus 38 ~~~vll~G~~GtGKT~la 55 (324)
T 1hqc_A 38 LEHLLLFGPPGLGKTTLA 55 (324)
T ss_dssp CCCCEEECCTTCCCHHHH
T ss_pred CCcEEEECCCCCCHHHHH
Confidence 478999999999999654
No 161
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=89.10 E-value=0.73 Score=45.04 Aligned_cols=21 Identities=19% Similarity=0.237 Sum_probs=16.8
Q ss_pred cCCCEEEEecCCchHhHHHHH
Q 007814 179 SGRDMIGIAFTGSGKTLVFVL 199 (588)
Q Consensus 179 ~g~dvii~a~TGsGKTl~~~l 199 (588)
.|.-++++|++|+|||.....
T Consensus 34 ~G~~~~i~G~~G~GKTTl~~~ 54 (296)
T 1cr0_A 34 GGEVIMVTSGSGMGKSTFVRQ 54 (296)
T ss_dssp TTCEEEEEESTTSSHHHHHHH
T ss_pred CCeEEEEEeCCCCCHHHHHHH
Confidence 577788999999999965443
No 162
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=88.89 E-value=2 Score=42.09 Aligned_cols=21 Identities=24% Similarity=0.338 Sum_probs=16.5
Q ss_pred cCCCEEEEecCCchHhHHHHH
Q 007814 179 SGRDMIGIAFTGSGKTLVFVL 199 (588)
Q Consensus 179 ~g~dvii~a~TGsGKTl~~~l 199 (588)
.++-+++++++|+|||.....
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~ 124 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAK 124 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHH
Confidence 467788899999999965433
No 163
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=88.57 E-value=1.7 Score=44.39 Aligned_cols=72 Identities=15% Similarity=0.195 Sum_probs=55.7
Q ss_pred CCCEEEEEcCCHHHHHHHHHHHHHHhhcccccCCCCceEEEEEcCcchHHHHHHH---h-cCCcEEEeChHHHHHHHHcc
Q 007814 218 EGPFCLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVV---K-RGVHIVVATPGRLKDMLAKK 293 (588)
Q Consensus 218 ~~~~~Lil~Ptr~La~Q~~~~~~~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l---~-~~~~IvV~Tp~~L~~~l~~~ 293 (588)
.+.++||.|+++.-+..+++.+.+. ++.+..++|+.+..++...+ . ...+|+||| +.+. .
T Consensus 275 ~~~~~lVf~~~~~~~~~l~~~L~~~----------~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT-----~~~~-~ 338 (417)
T 2i4i_A 275 KDSLTLVFVETKKGADSLEDFLYHE----------GYACTSIHGDRSQRDREEALHQFRSGKSPILVAT-----AVAA-R 338 (417)
T ss_dssp TTCEEEEECSSHHHHHHHHHHHHHT----------TCCEEEECTTSCHHHHHHHHHHHHHTSSCEEEEC-----HHHH-T
T ss_pred CCCeEEEEECCHHHHHHHHHHHHHC----------CCCeeEecCCCCHHHHHHHHHHHHcCCCCEEEEC-----Chhh-c
Confidence 4678999999999999988888765 67899999998876554433 2 357899999 5554 4
Q ss_pred cCCCCCcceeEe
Q 007814 294 KMNLDNCRYLTL 305 (588)
Q Consensus 294 ~~~l~~~~~lVi 305 (588)
++++..+++||.
T Consensus 339 Gidip~v~~Vi~ 350 (417)
T 2i4i_A 339 GLDISNVKHVIN 350 (417)
T ss_dssp TSCCCCEEEEEE
T ss_pred CCCcccCCEEEE
Confidence 677888888775
No 164
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=88.41 E-value=1.8 Score=42.89 Aligned_cols=58 Identities=12% Similarity=0.021 Sum_probs=31.2
Q ss_pred cCCCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEEEEEcCCHHH-HHHHHHHHHH
Q 007814 179 SGRDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFCLIVCPSREL-ARQTYEVVEQ 241 (588)
Q Consensus 179 ~g~dvii~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~Lil~Ptr~L-a~Q~~~~~~~ 241 (588)
.|.-+++.+++|+|||...+-.+........ ..+.+..++|+.--..+ ..++...+..
T Consensus 106 ~G~i~~i~G~~GsGKT~la~~la~~~~~~~~-----~gg~~~~vlyi~~e~~~~~~~l~~~~~~ 164 (324)
T 2z43_A 106 TRTMTEFFGEFGSGKTQLCHQLSVNVQLPPE-----KGGLSGKAVYIDTEGTFRWERIENMAKA 164 (324)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHTTSCGG-----GTCCSCEEEEEESSSCCCHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHhHHHHHHHHHHhcccc-----cCCCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 4577899999999999654433332111100 01124578888754332 3444444443
No 165
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=88.39 E-value=1 Score=52.94 Aligned_cols=76 Identities=14% Similarity=0.224 Sum_probs=64.8
Q ss_pred cCCCCEEEEeCccccHHHHHHHHHHc----CCcEEEEeCCCCHHHHHHHHHHHhcCCcEEEEEcC-ccccCCCCCCcceE
Q 007814 392 KTPPPVLIFCENKADVDDIHEYLLLK----GVEAVAVHGGKDQEEREYAISSFKAGKKDVLVATD-VASKGLDFPDIQHV 466 (588)
Q Consensus 392 ~~~~~viIF~~s~~~~~~l~~~L~~~----g~~~~~ihg~~~~~~R~~~~~~f~~g~~~vLVaT~-~~~~GlDip~v~~V 466 (588)
..+.+++|.|+++.-+...++.+... ++.+..+++..+..++...++.+.+|..+|+|+|. .+...+.+.++.+|
T Consensus 650 ~~g~~vlvlvPt~~La~Q~~~~~~~~~~~~~i~v~~l~~~~~~~~~~~~~~~l~~g~~dIvV~T~~ll~~~~~~~~l~lv 729 (1151)
T 2eyq_A 650 DNHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSDVKFKDLGLL 729 (1151)
T ss_dssp TTTCEEEEECSSHHHHHHHHHHHHHHSTTTTCCEEEESTTSCHHHHHHHHHHHHTTCCSEEEECTHHHHSCCCCSSEEEE
T ss_pred HhCCeEEEEechHHHHHHHHHHHHHHhhcCCCeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhCCccccccceE
Confidence 35668999999999998888887643 67899999999999999999999999999999995 44566888888887
Q ss_pred E
Q 007814 467 I 467 (588)
Q Consensus 467 I 467 (588)
|
T Consensus 730 I 730 (1151)
T 2eyq_A 730 I 730 (1151)
T ss_dssp E
T ss_pred E
Confidence 7
No 166
>3hjh_A Transcription-repair-coupling factor; MFD, mutation frequency decline, ATP-binding, DNA DAMA repair, DNA-binding, helicase, hydrolase; 1.95A {Escherichia coli} PDB: 2b2n_A* 4dfc_A
Probab=88.13 E-value=1.8 Score=45.56 Aligned_cols=51 Identities=16% Similarity=0.236 Sum_probs=38.6
Q ss_pred cCCCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEEEEEcCCHHHHHHHHHHHHHHh
Q 007814 179 SGRDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFCLIVCPSRELARQTYEVVEQFL 243 (588)
Q Consensus 179 ~g~dvii~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Q~~~~~~~~~ 243 (588)
.|....+.+-||||||++ ++.+. .. .+..+|||+|+...|.|+++.+..|+
T Consensus 13 ~~~~~~l~g~~gs~ka~~--~a~l~---~~---------~~~p~lvv~~~~~~A~~l~~~l~~~~ 63 (483)
T 3hjh_A 13 AGEQRLLGELTGAACATL--VAEIA---ER---------HAGPVVLIAPDMQNALRLHDEISQFT 63 (483)
T ss_dssp TTCEEEEECCCTTHHHHH--HHHHH---HH---------SSSCEEEEESSHHHHHHHHHHHHHTC
T ss_pred CCCeEEEeCCCchHHHHH--HHHHH---HH---------hCCCEEEEeCCHHHHHHHHHHHHhhC
Confidence 456788899999999954 33322 11 13347999999999999999999885
No 167
>3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus}
Probab=87.82 E-value=1.9 Score=42.34 Aligned_cols=71 Identities=10% Similarity=0.171 Sum_probs=54.2
Q ss_pred CCEEEEEcCCHHHHHHHHHHHHHHhhcccccCCCCceEEEEEcCcchHHHHHHH---h-cCCcEEEeChHHHHHHHHccc
Q 007814 219 GPFCLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVV---K-RGVHIVVATPGRLKDMLAKKK 294 (588)
Q Consensus 219 ~~~~Lil~Ptr~La~Q~~~~~~~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l---~-~~~~IvV~Tp~~L~~~l~~~~ 294 (588)
+.++||.|+|+.-+..+++.+... ++.+..++|+.+..++...+ . ...+|+||| +.+ ..+
T Consensus 28 ~~~~LVF~~t~~~~~~l~~~L~~~----------g~~~~~lhg~l~~~~r~~~~~~f~~g~~~vLVaT-----~va-~~G 91 (300)
T 3i32_A 28 PDRAMVFTRTKAETEEIAQGLLRL----------GHPAQALHGDMSQGERERVMGAFRQGEVRVLVAT-----DVA-ARG 91 (300)
T ss_dssp CSSEEEECSSHHHHHHHHHHHHTT----------TCCEEEECSCCCTHHHHHHHHHHHHTSCCEEEEC-----STT-TCS
T ss_pred CCCEEEEECCHHHHHHHHHHHHhC----------CCCEEEEeCCCCHHHHHHHHHHhhcCCceEEEEe-----chh-hcC
Confidence 567999999999988887777654 78899999998776655444 2 357899999 444 346
Q ss_pred CCCCCcceeEe
Q 007814 295 MNLDNCRYLTL 305 (588)
Q Consensus 295 ~~l~~~~~lVi 305 (588)
+++..+++||.
T Consensus 92 idi~~v~~VI~ 102 (300)
T 3i32_A 92 LDIPQVDLVVH 102 (300)
T ss_dssp TTCCCCSEEEE
T ss_pred ccccceeEEEE
Confidence 77888888875
No 168
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=87.76 E-value=0.98 Score=52.80 Aligned_cols=77 Identities=17% Similarity=0.127 Sum_probs=64.6
Q ss_pred cCCCCEEEEeCccccHHHHHHHHHH---cCCcEEEEeCCCCHHHHHHHHHHHhcCCcEEEEEcCccc----cCCCCCCcc
Q 007814 392 KTPPPVLIFCENKADVDDIHEYLLL---KGVEAVAVHGGKDQEEREYAISSFKAGKKDVLVATDVAS----KGLDFPDIQ 464 (588)
Q Consensus 392 ~~~~~viIF~~s~~~~~~l~~~L~~---~g~~~~~ihg~~~~~~R~~~~~~f~~g~~~vLVaT~~~~----~GlDip~v~ 464 (588)
..+.++||.+|++.-+..+++.|.. .++.+..+||+.+..+|...++.+..|..+|+|+|.-.- .-+++.+++
T Consensus 119 ~~~~~~Lil~PtreLa~Q~~~~l~~l~~~~i~v~~l~Gg~~~~er~~~~~~l~~g~~~IlV~Tp~rL~~~l~~l~~~~l~ 198 (1104)
T 4ddu_A 119 RKGKKSALVFPTVTLVKQTLERLQKLADEKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREKLSQKRFD 198 (1104)
T ss_dssp TTTCCEEEEESSHHHHHHHHHHHHTTSCTTSCEEEECTTCCTTHHHHHHHHHHTSCCSEEEEEHHHHHHSHHHHHTSCCS
T ss_pred hcCCeEEEEechHHHHHHHHHHHHHhhCCCCeEEEEeCCCCHHHHHHHHHHHhCCCCCEEEECHHHHHHHHHhhcccCcC
Confidence 5677899999999999999999988 578999999999998989999999999999999996321 114566788
Q ss_pred eEEe
Q 007814 465 HVIN 468 (588)
Q Consensus 465 ~VI~ 468 (588)
+||.
T Consensus 199 ~lVi 202 (1104)
T 4ddu_A 199 FVFV 202 (1104)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 8774
No 169
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=87.68 E-value=0.91 Score=42.76 Aligned_cols=46 Identities=11% Similarity=0.127 Sum_probs=29.8
Q ss_pred CCcceeEecCcccccc-----cCcHHHHHHHHHhhhhcceeEEEecccchH
Q 007814 298 DNCRYLTLDEADRLVD-----LGFEDDIREVFDHFKAQRQTLLFSATMPTK 343 (588)
Q Consensus 298 ~~~~~lViDEah~l~~-----~~~~~~i~~i~~~~~~~~q~l~~SAT~~~~ 343 (588)
...+++|+||.-.+++ ......+..++..+...-.+++++......
T Consensus 134 ~~p~~lilDep~~~ld~~~d~~~~~~~l~~l~~~l~~~g~tii~vtH~~~~ 184 (251)
T 2ehv_A 134 INAKRLVIDSIPSIALRLEEERKIREVLLKLNTILLEMGVTTILTTEAPDP 184 (251)
T ss_dssp TTCSEEEEECHHHHHHHSSSGGGHHHHHHHHHHHHHHHCCEEEEEECCC--
T ss_pred hCCCEEEEccHHHHHhhcCCHHHHHHHHHHHHHHHHHCCCeEEEEECCCCC
Confidence 4578899999998876 334445677777765544566666665444
No 170
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=87.63 E-value=5.6 Score=42.52 Aligned_cols=78 Identities=18% Similarity=0.219 Sum_probs=59.1
Q ss_pred CCCEEEEEcCCHHHHHHHHHHHHHHhhcccccCCCCceEEEEEcCcchHHHHHHHh----cCCcEEEeChHHHHHHHHcc
Q 007814 218 EGPFCLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVK----RGVHIVVATPGRLKDMLAKK 293 (588)
Q Consensus 218 ~~~~~Lil~Ptr~La~Q~~~~~~~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~----~~~~IvV~Tp~~L~~~l~~~ 293 (588)
.+.++||.|+|+.-|..+++.+.+.+.. ++.+..++|+.+...+...+. ...+|+||| +.+ ..
T Consensus 338 ~~~~~iVF~~s~~~~~~l~~~L~~~~~~-------~~~v~~~h~~~~~~~R~~~~~~f~~g~~~vLvaT-----~~~-~~ 404 (563)
T 3i5x_A 338 SNYKAIIFAPTVKFTSFLCSILKNEFKK-------DLPILEFHGKITQNKRTSLVKRFKKDESGILVCT-----DVG-AR 404 (563)
T ss_dssp TCCEEEEECSCHHHHHHHHHHHHHHHTT-------TSCEEEESTTSCHHHHHHHHHHHHHCSSEEEEEC-----GGG-TS
T ss_pred CCCcEEEEcCcHHHHHHHHHHHHHhccC-------CceEEEecCCCCHHHHHHHHHHHhcCCCCEEEEc-----chh-hc
Confidence 4668999999999999999988887532 678899999987766544332 358999999 444 45
Q ss_pred cCCCCCcceeEecCc
Q 007814 294 KMNLDNCRYLTLDEA 308 (588)
Q Consensus 294 ~~~l~~~~~lViDEa 308 (588)
++++..+++||.-..
T Consensus 405 GiDip~v~~VI~~~~ 419 (563)
T 3i5x_A 405 GMDFPNVHEVLQIGV 419 (563)
T ss_dssp SCCCTTCCEEEEESC
T ss_pred CCCcccCCEEEEECC
Confidence 778888888885543
No 171
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=87.61 E-value=2.9 Score=38.22 Aligned_cols=21 Identities=24% Similarity=0.045 Sum_probs=16.3
Q ss_pred cCCCEEEEecCCchHhHHHHH
Q 007814 179 SGRDMIGIAFTGSGKTLVFVL 199 (588)
Q Consensus 179 ~g~dvii~a~TGsGKTl~~~l 199 (588)
.|.-+++.+++|+|||.....
T Consensus 19 ~G~~~~i~G~~GsGKTtl~~~ 39 (220)
T 2cvh_A 19 PGVLTQVYGPYASGKTTLALQ 39 (220)
T ss_dssp TTSEEEEECSTTSSHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHH
Confidence 456788999999999965443
No 172
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=87.12 E-value=7.7 Score=37.21 Aligned_cols=25 Identities=16% Similarity=0.230 Sum_probs=19.3
Q ss_pred HhcCCCEEEEecCCchHhHHHHHHH
Q 007814 177 VLSGRDMIGIAFTGSGKTLVFVLPM 201 (588)
Q Consensus 177 il~g~dvii~a~TGsGKTl~~~lp~ 201 (588)
+..|.-+++.+|+|+|||.....-+
T Consensus 27 l~~G~i~~i~G~~GsGKTtl~~~l~ 51 (279)
T 1nlf_A 27 MVAGTVGALVSPGGAGKSMLALQLA 51 (279)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHH
T ss_pred ccCCCEEEEEcCCCCCHHHHHHHHH
Confidence 4578889999999999996654433
No 173
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=87.08 E-value=2.4 Score=38.96 Aligned_cols=71 Identities=23% Similarity=0.312 Sum_probs=53.5
Q ss_pred CCCEEEEeCccccHHHHHHHHHHc-----CCcEEEEeCCCCHHHHHHHHHHHhcCCcEEEEEcCcc------ccCCCCCC
Q 007814 394 PPPVLIFCENKADVDDIHEYLLLK-----GVEAVAVHGGKDQEEREYAISSFKAGKKDVLVATDVA------SKGLDFPD 462 (588)
Q Consensus 394 ~~~viIF~~s~~~~~~l~~~L~~~-----g~~~~~ihg~~~~~~R~~~~~~f~~g~~~vLVaT~~~------~~GlDip~ 462 (588)
..++||.|+++.-+..+++.+... ++.+..++|+.+..++.. .+..+..+|+|+|.-. ...+++.+
T Consensus 82 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~---~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~ 158 (220)
T 1t6n_A 82 QVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEE---VLKKNCPHIVVGTPGRILALARNKSLNLKH 158 (220)
T ss_dssp CCCEEEECSCHHHHHHHHHHHHHHTTTSTTCCEEEESCCSCHHHHHH---HHHHSCCSEEEECHHHHHHHHHTTSSCCTT
T ss_pred CEEEEEEeCCHHHHHHHHHHHHHHHhhCCCceEEEEeCCCChHHHHH---HHhcCCCCEEEeCHHHHHHHHHhCCCCccc
Confidence 348999999999999998888765 788999999988765543 3456778999999521 23456667
Q ss_pred cceEE
Q 007814 463 IQHVI 467 (588)
Q Consensus 463 v~~VI 467 (588)
+++||
T Consensus 159 ~~~lV 163 (220)
T 1t6n_A 159 IKHFI 163 (220)
T ss_dssp CCEEE
T ss_pred CCEEE
Confidence 77766
No 174
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=86.67 E-value=1.1 Score=55.06 Aligned_cols=47 Identities=26% Similarity=0.306 Sum_probs=33.1
Q ss_pred HHHHhc------CCCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEEEEEcCCHHH
Q 007814 174 LPVVLS------GRDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFCLIVCPSREL 231 (588)
Q Consensus 174 i~~il~------g~dvii~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~Lil~Ptr~L 231 (588)
+..++. ++++++.+|+|+|||..+...+.... ..|.+++|+..--.+
T Consensus 1415 LD~lLG~GGi~~g~~vll~GppGtGKT~LA~ala~ea~-----------~~G~~v~Fi~~e~~~ 1467 (2050)
T 3cmu_A 1415 LDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQ-----------REGKTCAFIDAEHAL 1467 (2050)
T ss_dssp HHHHHSSSSEETTSEEEEECCTTSSHHHHHHHHHHHHH-----------TTTCCEEEECTTSCC
T ss_pred HHHhcCCCCccCCeEEEEECCCCCCHHHHHHHHHHHHH-----------HcCCcEEEEEccccc
Confidence 555555 78999999999999977655444332 246678888866443
No 175
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=86.28 E-value=2 Score=42.83 Aligned_cols=39 Identities=18% Similarity=0.474 Sum_probs=24.5
Q ss_pred CCcceeEecCcccccccCcHHHHHHHHHhhhhcceeEEEe
Q 007814 298 DNCRYLTLDEADRLVDLGFEDDIREVFDHFKAQRQTLLFS 337 (588)
Q Consensus 298 ~~~~~lViDEah~l~~~~~~~~i~~i~~~~~~~~q~l~~S 337 (588)
...+++|+||+|.|.... ...+..++...+....+++.+
T Consensus 109 ~~~~viiiDe~~~l~~~~-~~~L~~~le~~~~~~~~il~~ 147 (340)
T 1sxj_C 109 KGFKLIILDEADAMTNAA-QNALRRVIERYTKNTRFCVLA 147 (340)
T ss_dssp CSCEEEEETTGGGSCHHH-HHHHHHHHHHTTTTEEEEEEE
T ss_pred CCceEEEEeCCCCCCHHH-HHHHHHHHhcCCCCeEEEEEe
Confidence 457899999999986532 244555555555555554443
No 176
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=86.06 E-value=1.7 Score=43.77 Aligned_cols=42 Identities=26% Similarity=0.215 Sum_probs=26.6
Q ss_pred cCCCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEEEEEcCCHHH
Q 007814 179 SGRDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFCLIVCPSREL 231 (588)
Q Consensus 179 ~g~dvii~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~Lil~Ptr~L 231 (588)
.|.-+++.+|+|+|||... +.++..+.. .+..++|+..-..+
T Consensus 60 ~G~i~~I~GppGsGKSTLa-l~la~~~~~----------~gg~VlyId~E~s~ 101 (356)
T 3hr8_A 60 RGRIVEIFGQESSGKTTLA-LHAIAEAQK----------MGGVAAFIDAEHAL 101 (356)
T ss_dssp TTEEEEEEESTTSSHHHHH-HHHHHHHHH----------TTCCEEEEESSCCC
T ss_pred CCcEEEEECCCCCCHHHHH-HHHHHHHHh----------cCCeEEEEeccccc
Confidence 4567888999999999554 334333322 34567888765433
No 177
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=86.03 E-value=7.7 Score=41.68 Aligned_cols=79 Identities=18% Similarity=0.214 Sum_probs=59.7
Q ss_pred CCCEEEEEcCCHHHHHHHHHHHHHHhhcccccCCCCceEEEEEcCcchHHHHHHHh----cCCcEEEeChHHHHHHHHcc
Q 007814 218 EGPFCLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVK----RGVHIVVATPGRLKDMLAKK 293 (588)
Q Consensus 218 ~~~~~Lil~Ptr~La~Q~~~~~~~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~----~~~~IvV~Tp~~L~~~l~~~ 293 (588)
.+.++||.|+|+.-|..+++.+.+.+. .++.+..++|+.+..++...+. ...+|+||| +.+ ..
T Consensus 287 ~~~~~iVF~~t~~~~~~l~~~L~~~~~-------~~~~v~~~hg~~~~~~R~~~~~~F~~g~~~vLVaT-----~~~-~~ 353 (579)
T 3sqw_A 287 SNYKAIIFAPTVKFTSFLCSILKNEFK-------KDLPILEFHGKITQNKRTSLVKRFKKDESGILVCT-----DVG-AR 353 (579)
T ss_dssp TCCEEEEECSSHHHHHHHHHHHHHHHT-------TTSCEEEESTTSCHHHHHHHHHHHHHCSSEEEEEC-----GGG-TS
T ss_pred CCCcEEEECCcHHHHHHHHHHHHHhhc-------CCCcEEEecCCCCHHHHHHHHHHhhcCCCeEEEEc-----chh-hc
Confidence 466899999999999999998888753 2678899999987766544332 358999999 444 34
Q ss_pred cCCCCCcceeEecCcc
Q 007814 294 KMNLDNCRYLTLDEAD 309 (588)
Q Consensus 294 ~~~l~~~~~lViDEah 309 (588)
++++..+++||.-..-
T Consensus 354 GiDip~v~~VI~~~~p 369 (579)
T 3sqw_A 354 GMDFPNVHEVLQIGVP 369 (579)
T ss_dssp SCCCTTCCEEEEESCC
T ss_pred CCCcccCCEEEEcCCC
Confidence 7778889988865543
No 178
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=85.97 E-value=2 Score=42.05 Aligned_cols=38 Identities=16% Similarity=0.316 Sum_probs=22.3
Q ss_pred CcceeEecCcccccccCcHHHHHHHHHhhhhcceeEEEe
Q 007814 299 NCRYLTLDEADRLVDLGFEDDIREVFDHFKAQRQTLLFS 337 (588)
Q Consensus 299 ~~~~lViDEah~l~~~~~~~~i~~i~~~~~~~~q~l~~S 337 (588)
...+|||||+|.+.... ...+..++...+....+++.|
T Consensus 107 ~~~viiiDe~~~l~~~~-~~~L~~~le~~~~~~~~il~~ 144 (323)
T 1sxj_B 107 KHKIVILDEADSMTAGA-QQALRRTMELYSNSTRFAFAC 144 (323)
T ss_dssp CCEEEEEESGGGSCHHH-HHTTHHHHHHTTTTEEEEEEE
T ss_pred CceEEEEECcccCCHHH-HHHHHHHHhccCCCceEEEEe
Confidence 36799999999986532 123344444444444455544
No 179
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=85.76 E-value=0.63 Score=40.06 Aligned_cols=21 Identities=14% Similarity=-0.089 Sum_probs=17.5
Q ss_pred HhcCCCEEEEecCCchHhHHH
Q 007814 177 VLSGRDMIGIAFTGSGKTLVF 197 (588)
Q Consensus 177 il~g~dvii~a~TGsGKTl~~ 197 (588)
+..+.++++.+++|+|||.++
T Consensus 24 ~~~~~~vll~G~~GtGKt~lA 44 (143)
T 3co5_A 24 AKRTSPVFLTGEAGSPFETVA 44 (143)
T ss_dssp HTCSSCEEEEEETTCCHHHHH
T ss_pred hCCCCcEEEECCCCccHHHHH
Confidence 446789999999999999653
No 180
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=85.53 E-value=1.7 Score=44.41 Aligned_cols=17 Identities=41% Similarity=0.415 Sum_probs=13.6
Q ss_pred CCEEE--EecCCchHhHHH
Q 007814 181 RDMIG--IAFTGSGKTLVF 197 (588)
Q Consensus 181 ~dvii--~a~TGsGKTl~~ 197 (588)
..+++ .|+.|+|||...
T Consensus 51 ~~~li~i~G~~G~GKT~L~ 69 (412)
T 1w5s_A 51 VNMIYGSIGRVGIGKTTLA 69 (412)
T ss_dssp EEEEEECTTCCSSSHHHHH
T ss_pred CEEEEeCcCcCCCCHHHHH
Confidence 45777 799999999654
No 181
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=85.46 E-value=4.5 Score=39.82 Aligned_cols=52 Identities=8% Similarity=-0.077 Sum_probs=30.9
Q ss_pred cCCCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEEEEEcCCHHHHHHHHHHHHHH
Q 007814 179 SGRDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFCLIVCPSRELARQTYEVVEQF 242 (588)
Q Consensus 179 ~g~dvii~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Q~~~~~~~~ 242 (588)
.|.=+++.|++|+|||...+--+...+ . .+..++|++-- .-..|+...+...
T Consensus 67 ~G~l~li~G~pG~GKTtl~l~ia~~~a-~----------~g~~vl~~slE-~s~~~l~~R~~~~ 118 (315)
T 3bh0_A 67 RRNFVLIAARPSMGKTAFALKQAKNMS-D----------NDDVVNLHSLE-MGKKENIKRLIVT 118 (315)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHHHHH-T----------TTCEEEEEESS-SCHHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHH-H----------cCCeEEEEECC-CCHHHHHHHHHHH
Confidence 566788889999999955443333332 1 23467777643 3445555555443
No 182
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=85.30 E-value=1.1 Score=47.22 Aligned_cols=19 Identities=32% Similarity=0.454 Sum_probs=16.0
Q ss_pred cCCCEEEEecCCchHhHHH
Q 007814 179 SGRDMIGIAFTGSGKTLVF 197 (588)
Q Consensus 179 ~g~dvii~a~TGsGKTl~~ 197 (588)
..+.+++.+|+|+|||+++
T Consensus 237 ~~~~vLL~GppGtGKT~lA 255 (489)
T 3hu3_A 237 PPRGILLYGPPGTGKTLIA 255 (489)
T ss_dssp CCCEEEEECSTTSSHHHHH
T ss_pred CCCcEEEECcCCCCHHHHH
Confidence 3468999999999999764
No 183
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=85.22 E-value=5.7 Score=40.16 Aligned_cols=72 Identities=13% Similarity=0.207 Sum_probs=55.7
Q ss_pred CCCEEEEEcCCHHHHHHHHHHHHHHhhcccccCCCCceEEEEEcCcchHHHHHHH---h-cCCcEEEeChHHHHHHHHcc
Q 007814 218 EGPFCLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVV---K-RGVHIVVATPGRLKDMLAKK 293 (588)
Q Consensus 218 ~~~~~Lil~Ptr~La~Q~~~~~~~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l---~-~~~~IvV~Tp~~L~~~l~~~ 293 (588)
.+.++||.|+++.-|..+++.+.+. ++.+..++|+.+..++...+ . ...+|+||| +.+ ..
T Consensus 265 ~~~~~lvf~~~~~~~~~l~~~L~~~----------~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T-----~~~-~~ 328 (412)
T 3fht_A 265 TIAQAMIFCHTRKTASWLAAELSKE----------GHQVALLSGEMMVEQRAAVIERFREGKEKVLVTT-----NVC-AR 328 (412)
T ss_dssp SSSEEEEECSSHHHHHHHHHHHHHT----------TCCCEEECTTSCHHHHHHHHHHHHTTSCSEEEEC-----GGG-TS
T ss_pred CCCCEEEEeCCHHHHHHHHHHHHhC----------CCeEEEecCCCCHHHHHHHHHHHHCCCCcEEEEc-----Ccc-cc
Confidence 3568999999999999988888775 67788999998776654443 2 357899999 343 45
Q ss_pred cCCCCCcceeEe
Q 007814 294 KMNLDNCRYLTL 305 (588)
Q Consensus 294 ~~~l~~~~~lVi 305 (588)
++++..+++||.
T Consensus 329 Gidip~~~~Vi~ 340 (412)
T 3fht_A 329 GIDVEQVSVVIN 340 (412)
T ss_dssp SCCCTTEEEEEE
T ss_pred CCCccCCCEEEE
Confidence 778888998884
No 184
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=85.20 E-value=0.88 Score=48.83 Aligned_cols=19 Identities=26% Similarity=0.188 Sum_probs=16.3
Q ss_pred cCCCEEEEecCCchHhHHH
Q 007814 179 SGRDMIGIAFTGSGKTLVF 197 (588)
Q Consensus 179 ~g~dvii~a~TGsGKTl~~ 197 (588)
.|..+++.+|+|+|||..+
T Consensus 107 ~g~~vll~Gp~GtGKTtla 125 (543)
T 3m6a_A 107 KGPILCLAGPPGVGKTSLA 125 (543)
T ss_dssp CSCEEEEESSSSSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 4778999999999999654
No 185
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=85.13 E-value=2.4 Score=39.82 Aligned_cols=71 Identities=8% Similarity=0.174 Sum_probs=53.2
Q ss_pred CCCCEEEEeCccccHHHHHHHHHHc----CCcEEEEeCCCCHHHHHHHHHHHhcCCcEEEEEcC-----ccc-cCCCCCC
Q 007814 393 TPPPVLIFCENKADVDDIHEYLLLK----GVEAVAVHGGKDQEEREYAISSFKAGKKDVLVATD-----VAS-KGLDFPD 462 (588)
Q Consensus 393 ~~~~viIF~~s~~~~~~l~~~L~~~----g~~~~~ihg~~~~~~R~~~~~~f~~g~~~vLVaT~-----~~~-~GlDip~ 462 (588)
.++.+||.++++.-+..+++.+... ++.+..++|+.+.......+. . ..+|+|+|. .+. ..+++.+
T Consensus 101 ~~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~---~-~~~I~v~Tp~~l~~~l~~~~~~~~~ 176 (242)
T 3fe2_A 101 DGPICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLE---R-GVEICIATPGRLIDFLECGKTNLRR 176 (242)
T ss_dssp CCCSEEEECSSHHHHHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHH---H-CCSEEEECHHHHHHHHHHTSCCCTT
T ss_pred CCCEEEEEeCcHHHHHHHHHHHHHHHhhcCceEEEEECCCChHHHHHHhc---C-CCCEEEECHHHHHHHHHcCCCCccc
Confidence 3567999999999988887777553 889999999998776655443 2 478999995 222 3467778
Q ss_pred cceEE
Q 007814 463 IQHVI 467 (588)
Q Consensus 463 v~~VI 467 (588)
+++||
T Consensus 177 ~~~lV 181 (242)
T 3fe2_A 177 TTYLV 181 (242)
T ss_dssp CCEEE
T ss_pred ccEEE
Confidence 88777
No 186
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=85.11 E-value=0.63 Score=40.12 Aligned_cols=20 Identities=10% Similarity=-0.014 Sum_probs=17.3
Q ss_pred hcCCCEEEEecCCchHhHHH
Q 007814 178 LSGRDMIGIAFTGSGKTLVF 197 (588)
Q Consensus 178 l~g~dvii~a~TGsGKTl~~ 197 (588)
..+.++++.+++|+|||.++
T Consensus 22 ~~~~~vll~G~~GtGKt~lA 41 (145)
T 3n70_A 22 ETDIAVWLYGAPGTGRMTGA 41 (145)
T ss_dssp TCCSCEEEESSTTSSHHHHH
T ss_pred CCCCCEEEECCCCCCHHHHH
Confidence 46789999999999999664
No 187
>1e9r_A Conjugal transfer protein TRWB; coupling protein, bacterial conjugation, F1-ATPase-like quaternary structure, ring helicases; 2.4A {Escherichia coli} SCOP: c.37.1.11 PDB: 1e9s_A 1gki_A* 1gl7_A* 1gl6_A*
Probab=84.91 E-value=0.87 Score=47.31 Aligned_cols=44 Identities=20% Similarity=0.369 Sum_probs=32.3
Q ss_pred cCCCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEEEEEcCCHHHHH
Q 007814 179 SGRDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFCLIVCPSRELAR 233 (588)
Q Consensus 179 ~g~dvii~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~ 233 (588)
...+++++|+||||||... .+++..++. .+..++|+=|..++..
T Consensus 52 ~~~h~~i~G~tGsGKs~~~-~~li~~~~~----------~g~~viv~Dpkge~~~ 95 (437)
T 1e9r_A 52 EPRHLLVNGATGTGKSVLL-RELAYTGLL----------RGDRMVIVDPNGDMLS 95 (437)
T ss_dssp GGGCEEEEECTTSSHHHHH-HHHHHHHHH----------TTCEEEEEEETTHHHH
T ss_pred CcceEEEECCCCCCHHHHH-HHHHHHHHH----------CCCcEEEEeCCCchhH
Confidence 4579999999999999763 344444443 3567888899988854
No 188
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=84.47 E-value=2.2 Score=42.42 Aligned_cols=74 Identities=12% Similarity=0.343 Sum_probs=54.9
Q ss_pred CCCEEEEEcCCHHHHHHHHHHHHHHhhcccccCCCCceEEEEEcCcchHHHHHHH---h-cCCcEEEeChHHHHHHHHcc
Q 007814 218 EGPFCLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVV---K-RGVHIVVATPGRLKDMLAKK 293 (588)
Q Consensus 218 ~~~~~Lil~Ptr~La~Q~~~~~~~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l---~-~~~~IvV~Tp~~L~~~l~~~ 293 (588)
.+.++||.|+++.-+..+++.+.+. ++.+..++|+.+..++...+ . ...+|+|+| +.+. .
T Consensus 237 ~~~~~lvf~~~~~~~~~l~~~L~~~----------~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T-----~~~~-~ 300 (367)
T 1hv8_A 237 KEFYGLVFCKTKRDTKELASMLRDI----------GFKAGAIHGDLSQSQREKVIRLFKQKKIRILIAT-----DVMS-R 300 (367)
T ss_dssp TTCCEEEECSSHHHHHHHHHHHHHT----------TCCEEEECSSSCHHHHHHHHHHHHTTSSSEEEEC-----TTHH-H
T ss_pred CCCcEEEEECCHHHHHHHHHHHHhc----------CCCeEEeeCCCCHHHHHHHHHHHHcCCCeEEEEC-----Chhh-c
Confidence 4567999999999999988888775 67888999988766554433 2 357899999 3443 3
Q ss_pred cCCCCCcceeEecC
Q 007814 294 KMNLDNCRYLTLDE 307 (588)
Q Consensus 294 ~~~l~~~~~lViDE 307 (588)
++++..+++||.-.
T Consensus 301 Gid~~~~~~Vi~~~ 314 (367)
T 1hv8_A 301 GIDVNDLNCVINYH 314 (367)
T ss_dssp HCCCSCCSEEEESS
T ss_pred CCCcccCCEEEEec
Confidence 56777788887543
No 189
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=84.14 E-value=1.1 Score=45.15 Aligned_cols=39 Identities=21% Similarity=0.147 Sum_probs=25.2
Q ss_pred cCCCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEEEEEcCC
Q 007814 179 SGRDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFCLIVCPS 228 (588)
Q Consensus 179 ~g~dvii~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~Lil~Pt 228 (588)
.|+-+++.++.|+|||...+..+... .. .+..++|+.--
T Consensus 60 ~G~iv~I~G~pGsGKTtLal~la~~~-~~----------~g~~vlyi~~E 98 (349)
T 2zr9_A 60 RGRVIEIYGPESSGKTTVALHAVANA-QA----------AGGIAAFIDAE 98 (349)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHH-HH----------TTCCEEEEESS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH-Hh----------CCCeEEEEECC
Confidence 46778999999999996644433332 22 24567777643
No 190
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=84.05 E-value=8.1 Score=37.60 Aligned_cols=19 Identities=26% Similarity=0.256 Sum_probs=14.8
Q ss_pred cCCCEEEEecCCchHhHHH
Q 007814 179 SGRDMIGIAFTGSGKTLVF 197 (588)
Q Consensus 179 ~g~dvii~a~TGsGKTl~~ 197 (588)
.++-+.+++++|+|||...
T Consensus 97 ~~~~i~i~g~~G~GKTT~~ 115 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTA 115 (295)
T ss_dssp SSEEEEEECCTTTTHHHHH
T ss_pred CCeEEEEECCCCCCHHHHH
Confidence 4566778899999999554
No 191
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=83.60 E-value=3.2 Score=41.91 Aligned_cols=39 Identities=23% Similarity=0.262 Sum_probs=25.1
Q ss_pred cCCCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEEEEEcCC
Q 007814 179 SGRDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFCLIVCPS 228 (588)
Q Consensus 179 ~g~dvii~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~Lil~Pt 228 (588)
.|+-+++.+++|+|||... +.++..+.. .+..++|+..-
T Consensus 73 ~G~li~I~G~pGsGKTtla-l~la~~~~~----------~g~~vlyi~~E 111 (366)
T 1xp8_A 73 RGRITEIYGPESGGKTTLA-LAIVAQAQK----------AGGTCAFIDAE 111 (366)
T ss_dssp TTSEEEEEESTTSSHHHHH-HHHHHHHHH----------TTCCEEEEESS
T ss_pred CCcEEEEEcCCCCChHHHH-HHHHHHHHH----------CCCeEEEEECC
Confidence 4567888999999999654 334333332 24457777654
No 192
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=83.26 E-value=2.5 Score=41.72 Aligned_cols=22 Identities=27% Similarity=0.126 Sum_probs=16.7
Q ss_pred cCCCEEEEecCCchHhHHHHHH
Q 007814 179 SGRDMIGIAFTGSGKTLVFVLP 200 (588)
Q Consensus 179 ~g~dvii~a~TGsGKTl~~~lp 200 (588)
.|.-+++.+++|+|||...+-.
T Consensus 97 ~g~i~~i~G~~gsGKT~la~~l 118 (322)
T 2i1q_A 97 SQSVTEFAGVFGSGKTQIMHQS 118 (322)
T ss_dssp TTEEEEEEESTTSSHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHH
Confidence 4567889999999999654433
No 193
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=82.92 E-value=4.5 Score=38.16 Aligned_cols=71 Identities=21% Similarity=0.320 Sum_probs=53.0
Q ss_pred CCCEEEEeCccccHHHHHHHHHHc----CCcEEEEeCCCCHHHHHHHHHHHhcCCcEEEEEcCc-----c--ccCCCCCC
Q 007814 394 PPPVLIFCENKADVDDIHEYLLLK----GVEAVAVHGGKDQEEREYAISSFKAGKKDVLVATDV-----A--SKGLDFPD 462 (588)
Q Consensus 394 ~~~viIF~~s~~~~~~l~~~L~~~----g~~~~~ihg~~~~~~R~~~~~~f~~g~~~vLVaT~~-----~--~~GlDip~ 462 (588)
+.++||.++++.-+..+++.+... ++.+..++|+.+.......+ .+..+|+|+|.- + ..++++..
T Consensus 111 ~~~~lil~Ptr~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~----~~~~~I~v~Tp~~l~~~l~~~~~~~l~~ 186 (249)
T 3ber_A 111 RLFALVLTPTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLAL----AKKPHIIIATPGRLIDHLENTKGFNLRA 186 (249)
T ss_dssp SSCEEEECSSHHHHHHHHHHHHHHHGGGTCCEEEECTTSCHHHHHHHH----HTCCSEEEECHHHHHHHHHHSTTCCCTT
T ss_pred CceEEEEeCCHHHHHHHHHHHHHHhccCCeeEEEEECCCChHHHHHHh----cCCCCEEEECHHHHHHHHHcCCCcCccc
Confidence 457999999999999888877654 78899999998866544333 356889999952 1 14567777
Q ss_pred cceEEe
Q 007814 463 IQHVIN 468 (588)
Q Consensus 463 v~~VI~ 468 (588)
+++||.
T Consensus 187 ~~~lVi 192 (249)
T 3ber_A 187 LKYLVM 192 (249)
T ss_dssp CCEEEE
T ss_pred cCEEEE
Confidence 887773
No 194
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=82.80 E-value=5.4 Score=40.24 Aligned_cols=73 Identities=11% Similarity=0.191 Sum_probs=55.2
Q ss_pred CCCEEEEEcCCHHHHHHHHHHHHHHhhcccccCCCCceEEEEEcCcchHHHHHHH---h-cCCcEEEeChHHHHHHHHcc
Q 007814 218 EGPFCLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVV---K-RGVHIVVATPGRLKDMLAKK 293 (588)
Q Consensus 218 ~~~~~Lil~Ptr~La~Q~~~~~~~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l---~-~~~~IvV~Tp~~L~~~l~~~ 293 (588)
.+.++||.|+++.-+..+++.+... ++.+..++|+.+..++...+ . ...+|+|+| +.+ ..
T Consensus 257 ~~~~~lVf~~~~~~~~~l~~~L~~~----------~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T-----~~~-~~ 320 (400)
T 1s2m_A 257 QINQAIIFCNSTNRVELLAKKITDL----------GYSCYYSHARMKQQERNKVFHEFRQGKVRTLVCS-----DLL-TR 320 (400)
T ss_dssp CCSEEEEECSSHHHHHHHHHHHHHH----------TCCEEEECTTSCHHHHHHHHHHHHTTSSSEEEES-----SCS-SS
T ss_pred CCCcEEEEEecHHHHHHHHHHHHhc----------CCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEc-----Ccc-cc
Confidence 4568999999999999988888876 67888999988776554433 2 357899999 333 34
Q ss_pred cCCCCCcceeEec
Q 007814 294 KMNLDNCRYLTLD 306 (588)
Q Consensus 294 ~~~l~~~~~lViD 306 (588)
++++..+++||.-
T Consensus 321 Gidip~~~~Vi~~ 333 (400)
T 1s2m_A 321 GIDIQAVNVVINF 333 (400)
T ss_dssp SCCCTTEEEEEES
T ss_pred CCCccCCCEEEEe
Confidence 6778888888753
No 195
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=82.69 E-value=1.8 Score=46.16 Aligned_cols=59 Identities=14% Similarity=0.193 Sum_probs=54.9
Q ss_pred CCCEEEEeCccccHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhcCCcEEEEEcC
Q 007814 394 PPPVLIFCENKADVDDIHEYLLLKGVEAVAVHGGKDQEEREYAISSFKAGKKDVLVATD 452 (588)
Q Consensus 394 ~~~viIF~~s~~~~~~l~~~L~~~g~~~~~ihg~~~~~~R~~~~~~f~~g~~~vLVaT~ 452 (588)
.+.+||.++++.-+....+.|...|+.+..+||+.+..++..+...+..|..+||++|.
T Consensus 65 ~g~~lvi~P~~aL~~q~~~~l~~~gi~~~~l~~~~~~~~~~~~~~~~~~~~~~ilv~Tp 123 (523)
T 1oyw_A 65 NGLTVVVSPLISLMKDQVDQLQANGVAAACLNSTQTREQQLEVMTGCRTGQIRLLYIAP 123 (523)
T ss_dssp SSEEEEECSCHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHHTCCSEEEECH
T ss_pred CCCEEEECChHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECH
Confidence 46799999999999999999999999999999999999999999999999999999995
No 196
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=82.48 E-value=1.5 Score=47.48 Aligned_cols=59 Identities=15% Similarity=0.224 Sum_probs=54.2
Q ss_pred CCCEEEEeCccccHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHH--hcCCcEEEEEcC
Q 007814 394 PPPVLIFCENKADVDDIHEYLLLKGVEAVAVHGGKDQEEREYAISSF--KAGKKDVLVATD 452 (588)
Q Consensus 394 ~~~viIF~~s~~~~~~l~~~L~~~g~~~~~ihg~~~~~~R~~~~~~f--~~g~~~vLVaT~ 452 (588)
.+.+||.+|++.-+....+.|...|+.+..++|+.+..++..++..+ ..+..+||++|.
T Consensus 84 ~g~~lVisP~~~L~~q~~~~l~~~gi~~~~l~~~~~~~~~~~~~~~l~~~~~~~~Ilv~Tp 144 (591)
T 2v1x_A 84 DGFTLVICPLISLMEDQLMVLKQLGISATMLNASSSKEHVKWVHAEMVNKNSELKLIYVTP 144 (591)
T ss_dssp SSEEEEECSCHHHHHHHHHHHHHHTCCEEECCSSCCHHHHHHHHHHHHCTTCCCCEEEECH
T ss_pred CCcEEEEeCHHHHHHHHHHHHHhcCCcEEEEeCCCCHHHHHHHHHHhhcccCCCCEEEECh
Confidence 46899999999999999999999999999999999999999888888 578899999997
No 197
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=82.35 E-value=3.8 Score=41.16 Aligned_cols=77 Identities=8% Similarity=0.174 Sum_probs=58.3
Q ss_pred CCCEEEEEcCCHHHHHHHHHHHHHHhhcccccCCCCceEEEEEcCcchHHHHHHH---h-cCCcEEEeChHHHHHHHHcc
Q 007814 218 EGPFCLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVV---K-RGVHIVVATPGRLKDMLAKK 293 (588)
Q Consensus 218 ~~~~~Lil~Ptr~La~Q~~~~~~~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l---~-~~~~IvV~Tp~~L~~~l~~~ 293 (588)
.+.++||.|+++.-|..+++.+... ++.+..++|+.+..++...+ . ...+|+|+| +.+ ..
T Consensus 242 ~~~~~lvf~~~~~~~~~l~~~l~~~----------~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T-----~~~-~~ 305 (395)
T 3pey_A 242 TIGSSIIFVATKKTANVLYGKLKSE----------GHEVSILHGDLQTQERDRLIDDFREGRSKVLITT-----NVL-AR 305 (395)
T ss_dssp TSSEEEEECSCHHHHHHHHHHHHHT----------TCCCEEECTTSCHHHHHHHHHHHHTTSCCEEEEC-----GGG-SS
T ss_pred cCCCEEEEeCCHHHHHHHHHHHHhc----------CCcEEEeCCCCCHHHHHHHHHHHHCCCCCEEEEC-----Chh-hc
Confidence 4568999999999999988888765 67788999998776554433 2 357899999 333 45
Q ss_pred cCCCCCcceeEecCccc
Q 007814 294 KMNLDNCRYLTLDEADR 310 (588)
Q Consensus 294 ~~~l~~~~~lViDEah~ 310 (588)
++++..+++||.-....
T Consensus 306 Gidip~~~~Vi~~~~p~ 322 (395)
T 3pey_A 306 GIDIPTVSMVVNYDLPT 322 (395)
T ss_dssp SCCCTTEEEEEESSCCB
T ss_pred CCCcccCCEEEEcCCCC
Confidence 77888899988755543
No 198
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=82.31 E-value=6.2 Score=39.41 Aligned_cols=16 Identities=25% Similarity=0.210 Sum_probs=13.6
Q ss_pred CEEEEecCCchHhHHH
Q 007814 182 DMIGIAFTGSGKTLVF 197 (588)
Q Consensus 182 dvii~a~TGsGKTl~~ 197 (588)
.+++.||.|+|||...
T Consensus 40 ~~ll~G~~G~GKT~la 55 (373)
T 1jr3_A 40 AYLFSGTRGVGKTSIA 55 (373)
T ss_dssp EEEEESCTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4789999999999654
No 199
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=82.00 E-value=3.7 Score=41.34 Aligned_cols=75 Identities=15% Similarity=0.143 Sum_probs=56.4
Q ss_pred CCCEEEEEcCCHHHHHHHHHHHHHHhhcccccCCCCceEEEEEcCcchHHHHHHH---h-cCCcEEEeChHHHHHHHHcc
Q 007814 218 EGPFCLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVV---K-RGVHIVVATPGRLKDMLAKK 293 (588)
Q Consensus 218 ~~~~~Lil~Ptr~La~Q~~~~~~~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l---~-~~~~IvV~Tp~~L~~~l~~~ 293 (588)
.+.++||.|+++.-+..+++.+... ++.+..++|+.+..++...+ . ....|+|+| +.+ ..
T Consensus 249 ~~~~~lvf~~~~~~~~~l~~~L~~~----------~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T-----~~~-~~ 312 (391)
T 1xti_A 249 EFNQVVIFVKSVQRCIALAQLLVEQ----------NFPAIAIHRGMPQEERLSRYQQFKDFQRRILVAT-----NLF-GR 312 (391)
T ss_dssp CCSEEEEECSCHHHHHHHHHHHHHT----------TCCEEEECTTSCHHHHHHHHHHHHTTCCSEEEES-----CCC-SS
T ss_pred CCCcEEEEeCcHHHHHHHHHHHHhC----------CCcEEEEeCCCCHHHHHHHHHHHhcCCCcEEEEC-----Chh-hc
Confidence 4568999999999999988888765 67888999998766554433 2 357899999 333 35
Q ss_pred cCCCCCcceeEecCc
Q 007814 294 KMNLDNCRYLTLDEA 308 (588)
Q Consensus 294 ~~~l~~~~~lViDEa 308 (588)
++++..+++||.-..
T Consensus 313 Gidi~~~~~Vi~~~~ 327 (391)
T 1xti_A 313 GMDIERVNIAFNYDM 327 (391)
T ss_dssp CBCCTTEEEEEESSC
T ss_pred CCCcccCCEEEEeCC
Confidence 677888888887544
No 200
>2l8b_A Protein TRAI, DNA helicase I; RECD, hydrolase; NMR {Escherichia coli}
Probab=81.55 E-value=1.5 Score=39.33 Aligned_cols=58 Identities=17% Similarity=0.127 Sum_probs=42.0
Q ss_pred cHHHHHHHHHHhcC--CCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEEEEEcCCHHHHHH
Q 007814 167 TPIQVQGLPVVLSG--RDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFCLIVCPSRELARQ 234 (588)
Q Consensus 167 ~~~Q~~~i~~il~g--~dvii~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Q 234 (588)
.+-|..++..++.. +=.++.++-|++||...+.-++....+ .|..+.+|+|+..-...
T Consensus 36 ~~~~~~a~~~l~~s~~~~~iv~g~ggs~~~~~~~a~L~~~a~~----------~Gr~V~vLAp~~~s~~~ 95 (189)
T 2l8b_A 36 TAGYSDAVSVLAQDRPSLAIVSGQGGAAGQRERVAELVMMARE----------QGREVQIIAADRRSQMN 95 (189)
T ss_dssp HHHHHHHHHHHHHHSCCEECCBCSSCSHHHHHHHHHHHHHHHH----------TTCCEEEECSTTHHHHH
T ss_pred CccchhHHHHHhccCCceEEEecccchHHHHHHHHHHHHHHHh----------cCeEEEEEcCchHHHHH
Confidence 46789999998743 345666999999998865555444333 58889999999776544
No 201
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=81.22 E-value=4.9 Score=40.13 Aligned_cols=51 Identities=12% Similarity=-0.048 Sum_probs=29.1
Q ss_pred HHHHh-----cCCCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEEEEEcCCH
Q 007814 174 LPVVL-----SGRDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFCLIVCPSR 229 (588)
Q Consensus 174 i~~il-----~g~dvii~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~Lil~Ptr 229 (588)
+..++ .|.-+++.+++|+|||...+-.+...... +...+.+..++|+.-..
T Consensus 111 LD~~LgGGl~~G~i~~I~G~~GsGKTtla~~la~~~~~~-----~~~gg~~~~vlyi~~E~ 166 (343)
T 1v5w_A 111 FDKLLGGGIESMAITEAFGEFRTGKTQLSHTLCVTAQLP-----GAGGYPGGKIIFIDTEN 166 (343)
T ss_dssp HHHHTTSSBCSSEEEEEECCTTCTHHHHHHHHHHHTTSC-----BTTTBCCCEEEEEESSS
T ss_pred HHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHHhcc-----cccCCCCCeEEEEECCC
Confidence 55555 34667889999999996544333221110 01112356788887544
No 202
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=80.72 E-value=0.84 Score=43.88 Aligned_cols=21 Identities=24% Similarity=0.126 Sum_probs=17.0
Q ss_pred HhcCCCEEEEecCCchHhHHH
Q 007814 177 VLSGRDMIGIAFTGSGKTLVF 197 (588)
Q Consensus 177 il~g~dvii~a~TGsGKTl~~ 197 (588)
+..|.-+.+++|||||||...
T Consensus 22 i~~g~~v~i~Gp~GsGKSTll 42 (261)
T 2eyu_A 22 HRKMGLILVTGPTGSGKSTTI 42 (261)
T ss_dssp GCSSEEEEEECSTTCSHHHHH
T ss_pred hCCCCEEEEECCCCccHHHHH
Confidence 346778899999999999553
No 203
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=80.58 E-value=15 Score=36.28 Aligned_cols=52 Identities=17% Similarity=0.134 Sum_probs=30.7
Q ss_pred cceeEecCcccccc-cCcHHHHHHHHHhhhhcceeEEEecccchHHHHHHHHh
Q 007814 300 CRYLTLDEADRLVD-LGFEDDIREVFDHFKAQRQTLLFSATMPTKIQNFARSA 351 (588)
Q Consensus 300 ~~~lViDEah~l~~-~~~~~~i~~i~~~~~~~~q~l~~SAT~~~~i~~~~~~~ 351 (588)
.+++++|.+.++.. ......+..+.+.+.++..++.+.+|....+.+.++.+
T Consensus 212 ~d~vliDtaG~~~~~~~l~~eL~~i~ral~~de~llvLDa~t~~~~~~~~~~~ 264 (328)
T 3e70_C 212 IDVVLIDTAGRSETNRNLMDEMKKIARVTKPNLVIFVGDALAGNAIVEQARQF 264 (328)
T ss_dssp CSEEEEEECCSCCTTTCHHHHHHHHHHHHCCSEEEEEEEGGGTTHHHHHHHHH
T ss_pred chhhHHhhccchhHHHHHHHHHHHHHHHhcCCCCEEEEecHHHHHHHHHHHHH
Confidence 45678888876542 22334555555555566667777777666555555443
No 204
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=80.50 E-value=3.5 Score=38.55 Aligned_cols=72 Identities=17% Similarity=0.277 Sum_probs=45.5
Q ss_pred CCCCEEEEeCccccHHHHHHHHHHc----CCcEEEEeCCCCHHHHHHHHHHHhcCCcEEEEEcC-----ccc-cCCCCCC
Q 007814 393 TPPPVLIFCENKADVDDIHEYLLLK----GVEAVAVHGGKDQEEREYAISSFKAGKKDVLVATD-----VAS-KGLDFPD 462 (588)
Q Consensus 393 ~~~~viIF~~s~~~~~~l~~~L~~~----g~~~~~ihg~~~~~~R~~~~~~f~~g~~~vLVaT~-----~~~-~GlDip~ 462 (588)
.+.++||.++++.-+..+++.+... ++.+..++|+.+... ....+..+..+|+|+|. .+. ..+++..
T Consensus 97 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~---~~~~l~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~ 173 (237)
T 3bor_A 97 KETQALVLAPTRELAQQIQKVILALGDYMGATCHACIGGTNVRN---EMQKLQAEAPHIVVGTPGRVFDMLNRRYLSPKW 173 (237)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECC----------------CCCSEEEECHHHHHHHHHTTSSCSTT
T ss_pred CCceEEEEECcHHHHHHHHHHHHHHhhhcCceEEEEECCCchHH---HHHHHhcCCCCEEEECHHHHHHHHHhCCcCccc
Confidence 3568999999999999999888765 567888888765433 23445567789999994 233 3356667
Q ss_pred cceEE
Q 007814 463 IQHVI 467 (588)
Q Consensus 463 v~~VI 467 (588)
+++||
T Consensus 174 ~~~lV 178 (237)
T 3bor_A 174 IKMFV 178 (237)
T ss_dssp CCEEE
T ss_pred CcEEE
Confidence 77766
No 205
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=80.44 E-value=4.4 Score=41.16 Aligned_cols=71 Identities=8% Similarity=0.215 Sum_probs=54.2
Q ss_pred CCEEEEEcCCHHHHHHHHHHHHHHhhcccccCCCCceEEEEEcCcchHHHHHHH---h-cCCcEEEeChHHHHHHHHccc
Q 007814 219 GPFCLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVV---K-RGVHIVVATPGRLKDMLAKKK 294 (588)
Q Consensus 219 ~~~~Lil~Ptr~La~Q~~~~~~~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l---~-~~~~IvV~Tp~~L~~~l~~~~ 294 (588)
..++||.|+++.-+..+++.+... ++.+..++|+.+..++...+ . ....|+|+| +.+ ..+
T Consensus 276 ~~~~lVf~~~~~~~~~l~~~L~~~----------~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T-----~~~-~~G 339 (410)
T 2j0s_A 276 ITQAVIFCNTKRKVDWLTEKMREA----------NFTVSSMHGDMPQKERESIMKEFRSGASRVLIST-----DVW-ARG 339 (410)
T ss_dssp SSEEEEECSSHHHHHHHHHHHHHT----------TCCCEEECTTSCHHHHHHHHHHHHHTSSCEEEEC-----GGG-SSS
T ss_pred CCcEEEEEcCHHHHHHHHHHHHhC----------CCceEEeeCCCCHHHHHHHHHHHHCCCCCEEEEC-----Chh-hCc
Confidence 458999999999999988888765 67888999998766554433 2 357899999 333 457
Q ss_pred CCCCCcceeEe
Q 007814 295 MNLDNCRYLTL 305 (588)
Q Consensus 295 ~~l~~~~~lVi 305 (588)
+++..+++||.
T Consensus 340 idi~~v~~Vi~ 350 (410)
T 2j0s_A 340 LDVPQVSLIIN 350 (410)
T ss_dssp CCCTTEEEEEE
T ss_pred CCcccCCEEEE
Confidence 78888888885
No 206
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=80.35 E-value=3.5 Score=42.86 Aligned_cols=50 Identities=8% Similarity=-0.055 Sum_probs=28.9
Q ss_pred cCCCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEEEEEcCCHHHHHHHHHHHH
Q 007814 179 SGRDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFCLIVCPSRELARQTYEVVE 240 (588)
Q Consensus 179 ~g~dvii~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Q~~~~~~ 240 (588)
.|.=+++.|++|+|||...+--+...+ . .|..++|++-- .-..|+..++.
T Consensus 196 ~G~liiIaG~pG~GKTtlal~ia~~~a-~----------~g~~vl~fSlE-ms~~ql~~R~~ 245 (444)
T 3bgw_A 196 RRNFVLIAARPSMGKTAFALKQAKNMS-D----------NDDVVNLHSLE-MGKKENIKRLI 245 (444)
T ss_dssp SSCEEEEEECSSSSHHHHHHHHHHHHH-H----------TTCEEEEECSS-SCTTHHHHHHH
T ss_pred CCcEEEEEeCCCCChHHHHHHHHHHHH-H----------cCCEEEEEECC-CCHHHHHHHHH
Confidence 456678889999999965444333332 2 24567777632 33344444443
No 207
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=80.22 E-value=13 Score=38.99 Aligned_cols=17 Identities=24% Similarity=0.344 Sum_probs=13.4
Q ss_pred CCEEEEecCCchHhHHH
Q 007814 181 RDMIGIAFTGSGKTLVF 197 (588)
Q Consensus 181 ~dvii~a~TGsGKTl~~ 197 (588)
.-+.+++++|||||...
T Consensus 294 eVI~LVGpNGSGKTTLl 310 (503)
T 2yhs_A 294 FVILMVGVNGVGKTTTI 310 (503)
T ss_dssp EEEEEECCTTSSHHHHH
T ss_pred eEEEEECCCcccHHHHH
Confidence 35678899999999553
No 208
>2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity A; hydrolase inhibitor-hydrolase complex, DEAD box RNA helicase; 2.90A {Escherichia coli}
Probab=81.27 E-value=0.35 Score=43.10 Aligned_cols=73 Identities=15% Similarity=0.188 Sum_probs=50.9
Q ss_pred CCCEEEEEcCCHHHHHHHHHHHHHHhhcccccCCCCceEEEEEcCcchHHHHHHH---h-cCCcEEEeChHHHHHHHHcc
Q 007814 218 EGPFCLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVV---K-RGVHIVVATPGRLKDMLAKK 293 (588)
Q Consensus 218 ~~~~~Lil~Ptr~La~Q~~~~~~~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l---~-~~~~IvV~Tp~~L~~~l~~~ 293 (588)
.+.++||.|+++.-+..+.+.+... ++.+..++|+.+..++...+ . ....|+||| +.+. .
T Consensus 29 ~~~~~iVF~~~~~~~~~l~~~L~~~----------~~~~~~~~g~~~~~~r~~~~~~f~~g~~~vLvaT-----~~~~-~ 92 (170)
T 2yjt_D 29 EATRSIVFVRKRERVHELANWLREA----------GINNCYLEGEMVQGKRNEAIKRLTEGRVNVLVAT-----DVAA-R 92 (170)
Confidence 3567999999999999888777665 67788888887665544333 2 246899999 3433 3
Q ss_pred cCCCCCcceeEec
Q 007814 294 KMNLDNCRYLTLD 306 (588)
Q Consensus 294 ~~~l~~~~~lViD 306 (588)
++++..+++||.-
T Consensus 93 Gid~~~~~~Vi~~ 105 (170)
T 2yjt_D 93 GIDIPDVSHVFNF 105 (170)
Confidence 5566677776653
No 209
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=80.15 E-value=4.2 Score=44.68 Aligned_cols=78 Identities=8% Similarity=0.288 Sum_probs=60.7
Q ss_pred CCCEEEEEcCCHHHHHHHHHHHHHHhhcccccCCCCceEEEEEcCcchHHHHHH---Hh-cCCcEEEeChHHHHHHHHcc
Q 007814 218 EGPFCLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEV---VK-RGVHIVVATPGRLKDMLAKK 293 (588)
Q Consensus 218 ~~~~~Lil~Ptr~La~Q~~~~~~~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~---l~-~~~~IvV~Tp~~L~~~l~~~ 293 (588)
.+.++||.|+|+.-|..+.+.+... ++++..++|+.+..++... +. ...+|+||| +.+ ..
T Consensus 444 ~~~~vlVf~~t~~~ae~L~~~L~~~----------gi~~~~lh~~~~~~~R~~~l~~f~~g~~~VLVaT-----~~l-~~ 507 (661)
T 2d7d_A 444 RNERVLVTTLTKKMSEDLTDYLKEI----------GIKVNYLHSEIKTLERIEIIRDLRLGKYDVLVGI-----NLL-RE 507 (661)
T ss_dssp TTCEEEEECSSHHHHHHHHHHHHHT----------TCCEEEECTTCCHHHHHHHHHHHHHTSCSEEEES-----CCC-ST
T ss_pred cCCeEEEEECCHHHHHHHHHHHHhc----------CCCeEEEeCCCCHHHHHHHHHHHhcCCeEEEEec-----chh-hC
Confidence 4678999999999999988888775 6788888988776655444 33 358999999 333 45
Q ss_pred cCCCCCcceeEecCcccc
Q 007814 294 KMNLDNCRYLTLDEADRL 311 (588)
Q Consensus 294 ~~~l~~~~~lViDEah~l 311 (588)
++++..+++||+-+++..
T Consensus 508 GlDip~v~lVi~~d~d~~ 525 (661)
T 2d7d_A 508 GLDIPEVSLVAILDADKE 525 (661)
T ss_dssp TCCCTTEEEEEETTTTCC
T ss_pred CcccCCCCEEEEeCcccc
Confidence 777889999999998874
No 210
>3dmn_A Putative DNA helicase; APC89291.2, lactobacillus plantarum WCFS1, STR genomics, PSI-2, midwest center for structural genomics; HET: MSE; 1.66A {Lactobacillus plantarum}
Probab=79.96 E-value=15 Score=32.41 Aligned_cols=64 Identities=19% Similarity=0.318 Sum_probs=50.1
Q ss_pred CCCCEEEEeCccccHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhcCCcEEEEEcCccccCCCCCCcceEEecCC
Q 007814 393 TPPPVLIFCENKADVDDIHEYLLLKGVEAVAVHGGKDQEEREYAISSFKAGKKDVLVATDVASKGLDFPDIQHVINYDM 471 (588)
Q Consensus 393 ~~~~viIF~~s~~~~~~l~~~L~~~g~~~~~ihg~~~~~~R~~~~~~f~~g~~~vLVaT~~~~~GlDip~v~~VI~~~~ 471 (588)
....+.|.|.+...+..+.+.|...|+++..+.++.. .....|.|+|--.+.|+-+ ++||.+++
T Consensus 60 g~~~iAVL~r~~~~~~~l~~~L~~~gi~~~~l~~~~~------------~~~~~v~v~t~~~~KGlEf---~~V~~~~~ 123 (174)
T 3dmn_A 60 ERDTTAIIGKSLAECEALTKALKARGEQVTLIQTENQ------------RLAPGVIVVPSFLAKGLEF---DAVIVWNA 123 (174)
T ss_dssp TTCCEEEEESSHHHHHHHHHHHHTTTCCEEECSSCC-------------CCCSSEEEEEGGGCTTCCE---EEEEEETC
T ss_pred CCCcEEEEecCHHHHHHHHHHHHHcCCcceeeccccc------------ccCCCeEEEEccccCCcCC---CEEEEecC
Confidence 4567999999999999999999999999877766432 1234689999999999987 56666554
No 211
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=79.76 E-value=2.9 Score=41.29 Aligned_cols=42 Identities=14% Similarity=-0.006 Sum_probs=27.5
Q ss_pred CEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEEEEEcCCHHHH
Q 007814 182 DMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFCLIVCPSRELA 232 (588)
Q Consensus 182 dvii~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~Lil~Ptr~La 232 (588)
-+.+.+|.|+|||...+-. +..+... +.+.+++|+..-..+.
T Consensus 30 iteI~G~pGsGKTtL~Lq~-~~~~~~~--------g~g~~vlyId~E~s~~ 71 (333)
T 3io5_A 30 LLILAGPSKSFKSNFGLTM-VSSYMRQ--------YPDAVCLFYDSEFGIT 71 (333)
T ss_dssp EEEEEESSSSSHHHHHHHH-HHHHHHH--------CTTCEEEEEESSCCCC
T ss_pred eEEEECCCCCCHHHHHHHH-HHHHHhc--------CCCceEEEEeccchhh
Confidence 5788899999999665443 3333321 2356889988765553
No 212
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=79.55 E-value=47 Score=32.25 Aligned_cols=53 Identities=19% Similarity=0.327 Sum_probs=28.8
Q ss_pred hHHHHHHHHcccCCCCCcceeEecCcccccc---cCcHHHHHHHHHhhhhcceeEEEeccc
Q 007814 283 PGRLKDMLAKKKMNLDNCRYLTLDEADRLVD---LGFEDDIREVFDHFKAQRQTLLFSATM 340 (588)
Q Consensus 283 p~~L~~~l~~~~~~l~~~~~lViDEah~l~~---~~~~~~i~~i~~~~~~~~q~l~~SAT~ 340 (588)
...+.+.+..... .--+|||||+|.+.. ..+...++.+....+ ... ++++++.
T Consensus 124 ~~~l~~~l~~~~~---~~~vlvlDe~~~~~~~~~~~~~~~l~~~~~~~~-~~~-~i~~g~~ 179 (357)
T 2fna_A 124 FANLLESFEQASK---DNVIIVLDEAQELVKLRGVNLLPALAYAYDNLK-RIK-FIMSGSE 179 (357)
T ss_dssp HHHHHHHHHHTCS---SCEEEEEETGGGGGGCTTCCCHHHHHHHHHHCT-TEE-EEEEESS
T ss_pred HHHHHHHHHhcCC---CCeEEEEECHHHhhccCchhHHHHHHHHHHcCC-CeE-EEEEcCc
Confidence 4455555543211 234799999999874 345555555555432 333 4444443
No 213
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=79.43 E-value=4.4 Score=36.59 Aligned_cols=71 Identities=21% Similarity=0.251 Sum_probs=51.6
Q ss_pred CCCCEEEEeCccccHHHHHHHHHHc--CCcEEEEeCCCCHHHHHHHHHHHhcCCcEEEEEcCc-----cc-cCCCCCCcc
Q 007814 393 TPPPVLIFCENKADVDDIHEYLLLK--GVEAVAVHGGKDQEEREYAISSFKAGKKDVLVATDV-----AS-KGLDFPDIQ 464 (588)
Q Consensus 393 ~~~~viIF~~s~~~~~~l~~~L~~~--g~~~~~ihg~~~~~~R~~~~~~f~~g~~~vLVaT~~-----~~-~GlDip~v~ 464 (588)
.+.++||.|+++.-+..+++.+... ++.+..++|+.+.......+. ...+|+|+|.- +. ..+++.+++
T Consensus 71 ~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~i~v~T~~~l~~~~~~~~~~~~~~~ 146 (207)
T 2gxq_A 71 RKPRALVLTPTRELALQVASELTAVAPHLKVVAVYGGTGYGKQKEALL----RGADAVVATPGRALDYLRQGVLDLSRVE 146 (207)
T ss_dssp CCCSEEEECSSHHHHHHHHHHHHHHCTTSCEEEECSSSCSHHHHHHHH----HCCSEEEECHHHHHHHHHHTSSCCTTCS
T ss_pred CCCcEEEEECCHHHHHHHHHHHHHHhhcceEEEEECCCChHHHHHHhh----CCCCEEEECHHHHHHHHHcCCcchhhce
Confidence 3568999999999999999998876 467888999887654433332 25789999952 12 346677777
Q ss_pred eEE
Q 007814 465 HVI 467 (588)
Q Consensus 465 ~VI 467 (588)
+||
T Consensus 147 ~iV 149 (207)
T 2gxq_A 147 VAV 149 (207)
T ss_dssp EEE
T ss_pred EEE
Confidence 776
No 214
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=79.27 E-value=3 Score=38.80 Aligned_cols=70 Identities=23% Similarity=0.246 Sum_probs=49.0
Q ss_pred CCCCEEEEeCccccHHHHHHHHHHc----CCcEEEEeCCCCHHHHHHHHHHHhcCCcEEEEEcCc-----ccc--CCCCC
Q 007814 393 TPPPVLIFCENKADVDDIHEYLLLK----GVEAVAVHGGKDQEEREYAISSFKAGKKDVLVATDV-----ASK--GLDFP 461 (588)
Q Consensus 393 ~~~~viIF~~s~~~~~~l~~~L~~~----g~~~~~ihg~~~~~~R~~~~~~f~~g~~~vLVaT~~-----~~~--GlDip 461 (588)
.+.++||.++++.-+..+++.+... ++.+..++|+.+.......+ +..+|+|+|.- +.. .+++.
T Consensus 96 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-----~~~~iiv~Tp~~l~~~l~~~~~~~~~ 170 (236)
T 2pl3_A 96 DGLGVLIISPTRELAYQTFEVLRKVGKNHDFSAGLIIGGKDLKHEAERI-----NNINILVCTPGRLLQHMDETVSFHAT 170 (236)
T ss_dssp GCCCEEEECSSHHHHHHHHHHHHHHTTTSSCCEEEECCC--CHHHHHHH-----TTCSEEEECHHHHHHHHHHCSSCCCT
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHHhCCCCeeEEEEECCCCHHHHHHhC-----CCCCEEEECHHHHHHHHHhcCCcccc
Confidence 3568999999999999999888765 47889999987755443332 46789999952 112 35666
Q ss_pred CcceEE
Q 007814 462 DIQHVI 467 (588)
Q Consensus 462 ~v~~VI 467 (588)
++++||
T Consensus 171 ~~~~lV 176 (236)
T 2pl3_A 171 DLQMLV 176 (236)
T ss_dssp TCCEEE
T ss_pred cccEEE
Confidence 677666
No 215
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=79.22 E-value=2.3 Score=45.15 Aligned_cols=40 Identities=25% Similarity=0.095 Sum_probs=27.1
Q ss_pred HHHHHHCCCCCCcHHHHHHHHH-HhcCCCEEEEecCCchHhHH
Q 007814 155 LKKLKAKGIVQPTPIQVQGLPV-VLSGRDMIGIAFTGSGKTLV 196 (588)
Q Consensus 155 ~~~l~~~g~~~p~~~Q~~~i~~-il~g~dvii~a~TGsGKTl~ 196 (588)
+..|.+.| .+++.+...+.. +..|..+++++|||||||..
T Consensus 236 ~~~l~~~G--~~~~~~l~~l~~~v~~g~~i~I~GptGSGKTTl 276 (511)
T 2oap_1 236 PIDLIEKG--TVPSGVLAYLWLAIEHKFSAIVVGETASGKTTT 276 (511)
T ss_dssp HHHHHHTT--SSCHHHHHHHHHHHHTTCCEEEEESTTSSHHHH
T ss_pred hhhHHhcC--CCCHHHHHHHHHHHhCCCEEEEECCCCCCHHHH
Confidence 34455555 244555555544 34788999999999999954
No 216
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=79.17 E-value=4.2 Score=37.57 Aligned_cols=72 Identities=13% Similarity=0.264 Sum_probs=48.5
Q ss_pred CCCCEEEEeCccccHHHHHHHHHHc---CCcEEEEeCCCCHHHHHHHHHHHhcCCcEEEEEcCc------cccCCCCCCc
Q 007814 393 TPPPVLIFCENKADVDDIHEYLLLK---GVEAVAVHGGKDQEEREYAISSFKAGKKDVLVATDV------ASKGLDFPDI 463 (588)
Q Consensus 393 ~~~~viIF~~s~~~~~~l~~~L~~~---g~~~~~ihg~~~~~~R~~~~~~f~~g~~~vLVaT~~------~~~GlDip~v 463 (588)
.+.++||.++++.-+..+++.+... ++.+..++|+.+...+... +. ...+|+|+|.- ....+++.++
T Consensus 93 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~-~~~~iiv~Tp~~l~~~~~~~~~~~~~~ 168 (228)
T 3iuy_A 93 NGPGMLVLTPTRELALHVEAECSKYSYKGLKSICIYGGRNRNGQIED---IS-KGVDIIIATPGRLNDLQMNNSVNLRSI 168 (228)
T ss_dssp CCCSEEEECSSHHHHHHHHHHHHHHCCTTCCEEEECC------CHHH---HH-SCCSEEEECHHHHHHHHHTTCCCCTTC
T ss_pred CCCcEEEEeCCHHHHHHHHHHHHHhcccCceEEEEECCCChHHHHHH---hc-CCCCEEEECHHHHHHHHHcCCcCcccc
Confidence 4668999999999999999988774 7888999998775544333 22 34789999952 1235667777
Q ss_pred ceEEe
Q 007814 464 QHVIN 468 (588)
Q Consensus 464 ~~VI~ 468 (588)
++||.
T Consensus 169 ~~lVi 173 (228)
T 3iuy_A 169 TYLVI 173 (228)
T ss_dssp CEEEE
T ss_pred eEEEE
Confidence 77663
No 217
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=79.12 E-value=7.1 Score=44.26 Aligned_cols=18 Identities=28% Similarity=0.340 Sum_probs=15.2
Q ss_pred CCCEEEEecCCchHhHHH
Q 007814 180 GRDMIGIAFTGSGKTLVF 197 (588)
Q Consensus 180 g~dvii~a~TGsGKTl~~ 197 (588)
..+++++||+|+|||.+.
T Consensus 191 ~~~vlL~G~pG~GKT~la 208 (854)
T 1qvr_A 191 KNNPVLIGEPGVGKTAIV 208 (854)
T ss_dssp CCCCEEEECTTSCHHHHH
T ss_pred CCceEEEcCCCCCHHHHH
Confidence 358999999999999654
No 218
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=79.09 E-value=4.8 Score=36.39 Aligned_cols=70 Identities=11% Similarity=0.194 Sum_probs=50.5
Q ss_pred CCCEEEEeCccccHHHHHHHHHHc-----CCcEEEEeCCCCHHHHHHHHHHHhcCCcEEEEEcCc-----cc-cCCCCCC
Q 007814 394 PPPVLIFCENKADVDDIHEYLLLK-----GVEAVAVHGGKDQEEREYAISSFKAGKKDVLVATDV-----AS-KGLDFPD 462 (588)
Q Consensus 394 ~~~viIF~~s~~~~~~l~~~L~~~-----g~~~~~ihg~~~~~~R~~~~~~f~~g~~~vLVaT~~-----~~-~GlDip~ 462 (588)
+.++||.++++.-+..+++.+... ++.+..++|+.+..+.... + .+..+|+|+|.- +. ..+++.+
T Consensus 71 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---~-~~~~~i~v~T~~~l~~~~~~~~~~~~~ 146 (206)
T 1vec_A 71 NIQAMVIVPTRELALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIMR---L-DDTVHVVIATPGRILDLIKKGVAKVDH 146 (206)
T ss_dssp SCCEEEECSCHHHHHHHHHHHHHHTTTSSSCCEEEECSSSCHHHHHHH---T-TSCCSEEEECHHHHHHHHHTTCSCCTT
T ss_pred CeeEEEEeCcHHHHHHHHHHHHHHHhhcCCceEEEEeCCccHHHHHHh---c-CCCCCEEEeCHHHHHHHHHcCCcCccc
Confidence 458999999999999988888654 6788999999886554322 2 356789999962 22 2345667
Q ss_pred cceEE
Q 007814 463 IQHVI 467 (588)
Q Consensus 463 v~~VI 467 (588)
+++||
T Consensus 147 ~~~lV 151 (206)
T 1vec_A 147 VQMIV 151 (206)
T ss_dssp CCEEE
T ss_pred CCEEE
Confidence 77766
No 219
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=78.91 E-value=2.8 Score=46.98 Aligned_cols=54 Identities=20% Similarity=0.293 Sum_probs=34.2
Q ss_pred CCCCCCCCCCCHHHHHHHHHC-CC--CCCcHHHHHHHHHHhcCCCEEEEecCCchHhHHH
Q 007814 141 PIKNFKDMRFPEPILKKLKAK-GI--VQPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVF 197 (588)
Q Consensus 141 p~~~f~~~~l~~~l~~~l~~~-g~--~~p~~~Q~~~i~~il~g~dvii~a~TGsGKTl~~ 197 (588)
|-.+|++.+.-....+.|.+. -+ ..|..++.-. +...+.+++.+|.|+|||+.+
T Consensus 472 p~v~w~diggl~~~k~~l~e~v~~p~~~p~~f~~~g---~~~~~gvLl~GPPGtGKT~lA 528 (806)
T 3cf2_A 472 PQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFG---MTPSKGVLFYGPPGCGKTLLA 528 (806)
T ss_dssp CCCCSTTCCSCHHHHHHHTTTTTTTTTCSGGGSSSC---CCCCSCCEEESSTTSSHHHHH
T ss_pred CCCCHHHhCCHHHHHHHHHHHHHhhhhCHHHHHhcC---CCCCceEEEecCCCCCchHHH
Confidence 446788888888888888765 22 1221111100 112468999999999999654
No 220
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=78.82 E-value=2.8 Score=42.14 Aligned_cols=19 Identities=42% Similarity=0.527 Sum_probs=16.3
Q ss_pred cCCCEEEEecCCchHhHHH
Q 007814 179 SGRDMIGIAFTGSGKTLVF 197 (588)
Q Consensus 179 ~g~dvii~a~TGsGKTl~~ 197 (588)
.+.++++.+|+|+|||.++
T Consensus 50 ~~~~vll~GppGtGKT~la 68 (363)
T 3hws_A 50 GKSNILLIGPTGSGKTLLA 68 (363)
T ss_dssp CCCCEEEECCTTSSHHHHH
T ss_pred CCCeEEEECCCCCCHHHHH
Confidence 4578999999999999664
No 221
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=78.62 E-value=3.3 Score=38.46 Aligned_cols=70 Identities=19% Similarity=0.218 Sum_probs=51.5
Q ss_pred CCCCEEEEeCccccHHHHHHHHHHc-----CCcEEEEeCCCCHHHHHHHHHHHhcCCcEEEEEcCcc------ccCCCCC
Q 007814 393 TPPPVLIFCENKADVDDIHEYLLLK-----GVEAVAVHGGKDQEEREYAISSFKAGKKDVLVATDVA------SKGLDFP 461 (588)
Q Consensus 393 ~~~~viIF~~s~~~~~~l~~~L~~~-----g~~~~~ihg~~~~~~R~~~~~~f~~g~~~vLVaT~~~------~~GlDip 461 (588)
.+.++||.|+++.-+..+++.+... ++.+..++|+.+..++...+ ...+|+|+|.-. ...+++.
T Consensus 91 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-----~~~~Iiv~Tp~~l~~~~~~~~~~~~ 165 (230)
T 2oxc_A 91 LSTQILILAPTREIAVQIHSVITAIGIKMEGLECHVFIGGTPLSQDKTRL-----KKCHIAVGSPGRIKQLIELDYLNPG 165 (230)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEECTTSCHHHHHHHT-----TSCSEEEECHHHHHHHHHTTSSCGG
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHHhcccCCceEEEEeCCCCHHHHHHhc-----cCCCEEEECHHHHHHHHhcCCcccc
Confidence 3568999999999999999888764 67889999999876654433 357899999631 1345566
Q ss_pred CcceEE
Q 007814 462 DIQHVI 467 (588)
Q Consensus 462 ~v~~VI 467 (588)
++++||
T Consensus 166 ~~~~lV 171 (230)
T 2oxc_A 166 SIRLFI 171 (230)
T ss_dssp GCCEEE
T ss_pred cCCEEE
Confidence 666665
No 222
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=77.83 E-value=5.8 Score=40.90 Aligned_cols=69 Identities=10% Similarity=0.139 Sum_probs=53.2
Q ss_pred EEEEEcCCHHHHHHHHHHHHHHhhcccccCCCCceEEEEEcCcchHHHHHHH---h-cCCcEEEeChHHHHHHHHcccCC
Q 007814 221 FCLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVV---K-RGVHIVVATPGRLKDMLAKKKMN 296 (588)
Q Consensus 221 ~~Lil~Ptr~La~Q~~~~~~~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l---~-~~~~IvV~Tp~~L~~~l~~~~~~ 296 (588)
.+||.|+++.-|..+++.+.+. ++.+..++|+.+..++...+ . ...+|+||| +.+ ..+++
T Consensus 302 ~~lVF~~t~~~a~~l~~~L~~~----------~~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLvaT-----~v~-~rGlD 365 (434)
T 2db3_A 302 GTIVFVETKRGADFLASFLSEK----------EFPTTSIHGDRLQSQREQALRDFKNGSMKVLIAT-----SVA-SRGLD 365 (434)
T ss_dssp TEEEECSSHHHHHHHHHHHHHT----------TCCEEEESTTSCHHHHHHHHHHHHTSSCSEEEEC-----GGG-TSSCC
T ss_pred CEEEEEeCcHHHHHHHHHHHhC----------CCCEEEEeCCCCHHHHHHHHHHHHcCCCcEEEEc-----hhh-hCCCC
Confidence 3999999999999988887765 67889999998766554443 2 357899999 443 45777
Q ss_pred CCCcceeEe
Q 007814 297 LDNCRYLTL 305 (588)
Q Consensus 297 l~~~~~lVi 305 (588)
+..+++||.
T Consensus 366 i~~v~~VI~ 374 (434)
T 2db3_A 366 IKNIKHVIN 374 (434)
T ss_dssp CTTCCEEEE
T ss_pred cccCCEEEE
Confidence 888888875
No 223
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=77.59 E-value=7.3 Score=42.77 Aligned_cols=78 Identities=12% Similarity=0.232 Sum_probs=60.1
Q ss_pred CCCEEEEEcCCHHHHHHHHHHHHHHhhcccccCCCCceEEEEEcCcchHHHHHH---Hh-cCCcEEEeChHHHHHHHHcc
Q 007814 218 EGPFCLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEV---VK-RGVHIVVATPGRLKDMLAKK 293 (588)
Q Consensus 218 ~~~~~Lil~Ptr~La~Q~~~~~~~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~---l~-~~~~IvV~Tp~~L~~~l~~~ 293 (588)
.+.++||.|+|+.-|..+.+.+... ++++..++|+.+..++... +. ...+|+||| +.+ ..
T Consensus 438 ~~~~vlVf~~t~~~ae~L~~~L~~~----------gi~~~~lh~~~~~~~R~~~~~~f~~g~~~VLvaT-----~~l-~~ 501 (664)
T 1c4o_A 438 RGERTLVTVLTVRMAEELTSFLVEH----------GIRARYLHHELDAFKRQALIRDLRLGHYDCLVGI-----NLL-RE 501 (664)
T ss_dssp TTCEEEEECSSHHHHHHHHHHHHHT----------TCCEEEECTTCCHHHHHHHHHHHHTTSCSEEEES-----CCC-CT
T ss_pred cCCEEEEEECCHHHHHHHHHHHHhc----------CCCceeecCCCCHHHHHHHHHHhhcCCceEEEcc-----Chh-hc
Confidence 4668999999999999988888775 6788888988776655544 33 348999999 343 45
Q ss_pred cCCCCCcceeEecCcccc
Q 007814 294 KMNLDNCRYLTLDEADRL 311 (588)
Q Consensus 294 ~~~l~~~~~lViDEah~l 311 (588)
++++..+++||+=+++..
T Consensus 502 GlDip~v~lVI~~d~d~~ 519 (664)
T 1c4o_A 502 GLDIPEVSLVAILDADKE 519 (664)
T ss_dssp TCCCTTEEEEEETTTTSC
T ss_pred CccCCCCCEEEEeCCccc
Confidence 777888999998888764
No 224
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=77.39 E-value=8.3 Score=36.59 Aligned_cols=72 Identities=17% Similarity=0.209 Sum_probs=52.6
Q ss_pred CCCCEEEEeCccccHHHHHHHHHHc----CCcEEEEeCCCCHHHHHHHHHHHhcCCcEEEEEcC-----cc--ccCCCCC
Q 007814 393 TPPPVLIFCENKADVDDIHEYLLLK----GVEAVAVHGGKDQEEREYAISSFKAGKKDVLVATD-----VA--SKGLDFP 461 (588)
Q Consensus 393 ~~~~viIF~~s~~~~~~l~~~L~~~----g~~~~~ihg~~~~~~R~~~~~~f~~g~~~vLVaT~-----~~--~~GlDip 461 (588)
.+.++||.++++.-+..+++.+... +..+..++|+......... +..+ .+|+|+|. .+ ..++++.
T Consensus 125 ~~~~~lil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---~~~~-~~Iiv~Tp~~l~~~~~~~~~~~~~ 200 (262)
T 3ly5_A 125 NGTGVLILSPTRELAMQTFGVLKELMTHHVHTYGLIMGGSNRSAEAQK---LGNG-INIIVATPGRLLDHMQNTPGFMYK 200 (262)
T ss_dssp GCCCEEEECSSHHHHHHHHHHHHHHTTTCCSCEEEECSSSCHHHHHHH---HHHC-CSEEEECHHHHHHHHHHCTTCCCT
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHHHhhcCceEEEEECCCCHHHHHHH---hcCC-CCEEEEcHHHHHHHHHccCCcccc
Confidence 4668999999999999998888764 6678889998876654433 3334 88999994 12 2356777
Q ss_pred CcceEEe
Q 007814 462 DIQHVIN 468 (588)
Q Consensus 462 ~v~~VI~ 468 (588)
++++||.
T Consensus 201 ~l~~lVi 207 (262)
T 3ly5_A 201 NLQCLVI 207 (262)
T ss_dssp TCCEEEE
T ss_pred cCCEEEE
Confidence 8887773
No 225
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=76.77 E-value=2.3 Score=42.77 Aligned_cols=18 Identities=28% Similarity=0.241 Sum_probs=14.8
Q ss_pred cCCCEEEEecCCchHhHH
Q 007814 179 SGRDMIGIAFTGSGKTLV 196 (588)
Q Consensus 179 ~g~dvii~a~TGsGKTl~ 196 (588)
.+.-+++++|||||||..
T Consensus 122 ~~g~i~I~GptGSGKTTl 139 (356)
T 3jvv_A 122 PRGLVLVTGPTGSGKSTT 139 (356)
T ss_dssp SSEEEEEECSTTSCHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 455788999999999954
No 226
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=76.62 E-value=12 Score=38.40 Aligned_cols=76 Identities=14% Similarity=0.235 Sum_probs=53.0
Q ss_pred CCCEEEEEcCCHHHHHHHHHHHHHHhhcccccCCCCceEEEEEc--------CcchHHHHHH---Hh-cCCcEEEeChHH
Q 007814 218 EGPFCLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIG--------GVDMRSQLEV---VK-RGVHIVVATPGR 285 (588)
Q Consensus 218 ~~~~~Lil~Ptr~La~Q~~~~~~~~~~~~~~~~~~~i~~~~~~g--------g~~~~~~~~~---l~-~~~~IvV~Tp~~ 285 (588)
.+.++||.|+++.-+..+.+.+... ++++..++| +.+..++... +. ...+|+|+|
T Consensus 360 ~~~k~lVF~~~~~~~~~l~~~L~~~----------~~~~~~~~g~~~~~~~~~~~~~~r~~~~~~F~~~~~~vLv~T--- 426 (494)
T 1wp9_A 360 QNSKIIVFTNYRETAKKIVNELVKD----------GIKAKRFVGQASKENDRGLSQREQKLILDEFARGEFNVLVAT--- 426 (494)
T ss_dssp TTCCEEEECSCHHHHHHHHHHHHHT----------TCCEEEECCSSCC-------CCHHHHHHHHHHHTSCSEEEEC---
T ss_pred CCCeEEEEEccHHHHHHHHHHHHHc----------CCCcEEEeccccccccccCCHHHHHHHHHHHhcCCceEEEEC---
Confidence 4668999999999999888887775 678888888 5555444333 32 357899999
Q ss_pred HHHHHHcccCCCCCcceeEecCcc
Q 007814 286 LKDMLAKKKMNLDNCRYLTLDEAD 309 (588)
Q Consensus 286 L~~~l~~~~~~l~~~~~lViDEah 309 (588)
+.+ ..++++..+++||+-+..
T Consensus 427 --~~~-~~Gldl~~~~~Vi~~d~~ 447 (494)
T 1wp9_A 427 --SVG-EEGLDVPEVDLVVFYEPV 447 (494)
T ss_dssp --GGG-GGGGGSTTCCEEEESSCC
T ss_pred --Ccc-ccCCCchhCCEEEEeCCC
Confidence 333 457788888888865443
No 227
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=76.02 E-value=42 Score=34.34 Aligned_cols=20 Identities=25% Similarity=0.245 Sum_probs=14.9
Q ss_pred cCCCEEEEecCCchHhHHHH
Q 007814 179 SGRDMIGIAFTGSGKTLVFV 198 (588)
Q Consensus 179 ~g~dvii~a~TGsGKTl~~~ 198 (588)
.++-+.+++++|+|||....
T Consensus 97 ~~~vi~i~G~~GsGKTT~~~ 116 (425)
T 2ffh_A 97 DRNLWFLVGLQGSGKTTTAA 116 (425)
T ss_dssp SSEEEEEECCTTSSHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHH
Confidence 34557778999999996543
No 228
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=75.50 E-value=1 Score=46.68 Aligned_cols=55 Identities=16% Similarity=0.285 Sum_probs=36.3
Q ss_pred CCCCCCCCCCCCHHHHHHHHHC---CCCCCcHHHHHHHHHHhcCCCEEEEecCCchHhHHH
Q 007814 140 PPIKNFKDMRFPEPILKKLKAK---GIVQPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVF 197 (588)
Q Consensus 140 ~p~~~f~~~~l~~~l~~~l~~~---g~~~p~~~Q~~~i~~il~g~dvii~a~TGsGKTl~~ 197 (588)
.|-.+|++.+--+...+.|.+. -+..|.-++...++ -.+.+++.||+|+|||+.+
T Consensus 175 ~p~~t~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~---~prGvLLyGPPGTGKTllA 232 (434)
T 4b4t_M 175 KPTETYSDVGGLDKQIEELVEAIVLPMKRADKFKDMGIR---APKGALMYGPPGTGKTLLA 232 (434)
T ss_dssp SCSCCGGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCC---CCCEEEEESCTTSSHHHHH
T ss_pred CCCCChHhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCC---CCCeeEEECcCCCCHHHHH
Confidence 4667899998777777777653 12233333322221 3478999999999999664
No 229
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=75.00 E-value=3.8 Score=42.53 Aligned_cols=69 Identities=13% Similarity=0.063 Sum_probs=46.7
Q ss_pred CCEEEEEcCCHHHHHHHHHHHHHHhhcccccCCCCceEEEEEcCcchHHHHHHHh-cCCcEEEeChHHHHHHHHcccCCC
Q 007814 219 GPFCLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVK-RGVHIVVATPGRLKDMLAKKKMNL 297 (588)
Q Consensus 219 ~~~~Lil~Ptr~La~Q~~~~~~~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~-~~~~IvV~Tp~~L~~~l~~~~~~l 297 (588)
+.++||.||+++-|..+++.+.+. ++++..++|.. .......+. ...+|+||| +.+. .++++
T Consensus 177 ~~~~lVF~~s~~~a~~l~~~L~~~----------~~~v~~lhg~~-R~~~~~~F~~g~~~vLVaT-----~v~e-~GiDi 239 (440)
T 1yks_A 177 KRPTAWFLPSIRAANVMAASLRKA----------GKSVVVLNRKT-FEREYPTIKQKKPDFILAT-----DIAE-MGANL 239 (440)
T ss_dssp CSCEEEECSCHHHHHHHHHHHHHT----------TCCEEECCSSS-CC--------CCCSEEEES-----SSTT-CCTTC
T ss_pred CCCEEEEeCCHHHHHHHHHHHHHc----------CCCEEEecchh-HHHHHhhhcCCCceEEEEC-----Chhh-eeecc
Confidence 567999999999999988888775 67788888843 233334443 358999999 4443 45667
Q ss_pred CCcceeEe
Q 007814 298 DNCRYLTL 305 (588)
Q Consensus 298 ~~~~~lVi 305 (588)
. +++||.
T Consensus 240 p-v~~VI~ 246 (440)
T 1yks_A 240 C-VERVLD 246 (440)
T ss_dssp C-CSEEEE
T ss_pred C-ceEEEe
Confidence 7 777763
No 230
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=74.60 E-value=3 Score=38.39 Aligned_cols=35 Identities=26% Similarity=0.223 Sum_probs=27.5
Q ss_pred CCCCcHHHHHHHHHHhcCCCEEEEecCCchHhHHH
Q 007814 163 IVQPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVF 197 (588)
Q Consensus 163 ~~~p~~~Q~~~i~~il~g~dvii~a~TGsGKTl~~ 197 (588)
+.--+.-|..++..+..|.-+.+++|.|||||..+
T Consensus 5 i~pk~~g~~~~l~~i~~Ge~~~liG~nGsGKSTLl 39 (208)
T 3b85_A 5 IRPKTLGQKHYVDAIDTNTIVFGLGPAGSGKTYLA 39 (208)
T ss_dssp CCCCSHHHHHHHHHHHHCSEEEEECCTTSSTTHHH
T ss_pred cccCCHhHHHHHHhccCCCEEEEECCCCCCHHHHH
Confidence 33335567778888888999999999999999554
No 231
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=74.46 E-value=3.4 Score=43.69 Aligned_cols=36 Identities=22% Similarity=0.274 Sum_probs=26.0
Q ss_pred CCCCCcHHHHHHHHHHhcCCCEEEEecCCchHhHHH
Q 007814 162 GIVQPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVF 197 (588)
Q Consensus 162 g~~~p~~~Q~~~i~~il~g~dvii~a~TGsGKTl~~ 197 (588)
.+..-...-..++..+..+.++++.||+|+|||..+
T Consensus 23 ~ivGq~~~i~~l~~al~~~~~VLL~GpPGtGKT~LA 58 (500)
T 3nbx_X 23 GLYERSHAIRLCLLAALSGESVFLLGPPGIAKSLIA 58 (500)
T ss_dssp TCSSCHHHHHHHHHHHHHTCEEEEECCSSSSHHHHH
T ss_pred hhHHHHHHHHHHHHHHhcCCeeEeecCchHHHHHHH
Confidence 344444444555666678999999999999999653
No 232
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=74.08 E-value=10 Score=35.58 Aligned_cols=70 Identities=17% Similarity=0.139 Sum_probs=50.5
Q ss_pred CCCEEEEeCccccHHHHHHHHHHc----CCcEEEEeCCCCHHHHHHHHHHHhcCCcEEEEEcCcc------ccCCCCCCc
Q 007814 394 PPPVLIFCENKADVDDIHEYLLLK----GVEAVAVHGGKDQEEREYAISSFKAGKKDVLVATDVA------SKGLDFPDI 463 (588)
Q Consensus 394 ~~~viIF~~s~~~~~~l~~~L~~~----g~~~~~ihg~~~~~~R~~~~~~f~~g~~~vLVaT~~~------~~GlDip~v 463 (588)
+.++||.|+++.-+..+++.+... ++.+..++|+.+.......+ ....+|+|+|.-. ...+++..+
T Consensus 100 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~----~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~ 175 (253)
T 1wrb_A 100 YPKCLILAPTRELAIQILSESQKFSLNTPLRSCVVYGGADTHSQIREV----QMGCHLLVATPGRLVDFIEKNKISLEFC 175 (253)
T ss_dssp CCSEEEECSSHHHHHHHHHHHHHHHTTSSCCEEEECSSSCSHHHHHHH----SSCCSEEEECHHHHHHHHHTTSBCCTTC
T ss_pred CceEEEEECCHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHh----CCCCCEEEECHHHHHHHHHcCCCChhhC
Confidence 468999999999999888887654 57788899988765443322 3467899999631 123567777
Q ss_pred ceEE
Q 007814 464 QHVI 467 (588)
Q Consensus 464 ~~VI 467 (588)
++||
T Consensus 176 ~~lV 179 (253)
T 1wrb_A 176 KYIV 179 (253)
T ss_dssp CEEE
T ss_pred CEEE
Confidence 7777
No 233
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=73.59 E-value=5.5 Score=48.29 Aligned_cols=122 Identities=18% Similarity=0.250 Sum_probs=69.4
Q ss_pred CCCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEEEEEcCCHHHHHHHHHHHHHHhhcccccCCCCceEEEE
Q 007814 180 GRDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFCLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLC 259 (588)
Q Consensus 180 g~dvii~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Q~~~~~~~~~~~~~~~~~~~i~~~~~ 259 (588)
|+-+.+.+|.|||||...+ +++..... .|..++|+.+--+|.... ++++. +.
T Consensus 1431 g~~iei~g~~~sGkttl~~-~~~a~~~~----------~g~~~~~i~~e~~~~~~~---~~~~G----------v~---- 1482 (1706)
T 3cmw_A 1431 GRIVEIYGPESSGKTTLTL-QVIAAAQR----------EGKTCAFIDAEHALDPIY---ARKLG----------VD---- 1482 (1706)
T ss_dssp TSEEEEECSTTSSHHHHHH-HHHHHHHH----------TTCCEEEECTTSCCCHHH---HHHTT----------CC----
T ss_pred CCEEEEEcCCCCCHHHHHH-HHHHHHHh----------cCCeEEEEecCCCCCHHH---HHHcC----------CC----
Confidence 4678999999999997754 44443333 477889998877765543 44442 11
Q ss_pred EcCcchHHHHHHHhcCCcEEEeChHHHHHHHHc--ccCCCCCcceeEecCcccccccC-----------------cHHHH
Q 007814 260 IGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAK--KKMNLDNCRYLTLDEADRLVDLG-----------------FEDDI 320 (588)
Q Consensus 260 ~gg~~~~~~~~~l~~~~~IvV~Tp~~L~~~l~~--~~~~l~~~~~lViDEah~l~~~~-----------------~~~~i 320 (588)
. -+++|.-|+.--+.|.- ..+.-..+++||||.+-.+...+ +...+
T Consensus 1483 -----~----------~~l~~~~p~~~e~~l~~~~~~~~s~~~~~vvvDsv~al~~~~e~~~~~~~~~~~~~ar~m~~~l 1547 (1706)
T 3cmw_A 1483 -----I----------DNLLCSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAM 1547 (1706)
T ss_dssp -----G----------GGCEEECCSSHHHHHHHHHHHHHHTCCSEEEESCSTTCCCTTTTC-------CCHHHHHHHHHH
T ss_pred -----H----------HHeEEeCCCcHHHHHHHHHHHHHcCCCCEEEEccHHhCCccccccccccccchhHHHHHHHHHH
Confidence 1 13556666432222211 11222457899999998876532 11124
Q ss_pred HHHHHhhhhcceeEEEecccchHH
Q 007814 321 REVFDHFKAQRQTLLFSATMPTKI 344 (588)
Q Consensus 321 ~~i~~~~~~~~q~l~~SAT~~~~i 344 (588)
+++...++...-+++|...+..++
T Consensus 1548 r~l~~~~~~~~~~~i~~~~~~~~~ 1571 (1706)
T 3cmw_A 1548 RKLAGNLKQSNTLLIFINQIRMKI 1571 (1706)
T ss_dssp HHHHHHHHHHTCEEEEEECBC---
T ss_pred HHHHHHHHhCCcEEEEeecccccc
Confidence 444555555555777777766543
No 234
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=73.50 E-value=22 Score=36.19 Aligned_cols=51 Identities=16% Similarity=0.120 Sum_probs=28.9
Q ss_pred HHHHHh-----cCCCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEEEEEcCC
Q 007814 173 GLPVVL-----SGRDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFCLIVCPS 228 (588)
Q Consensus 173 ~i~~il-----~g~dvii~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~Lil~Pt 228 (588)
.+..++ .|.-+.+++|+|+|||......++..+. .+...+.+..++++.-.
T Consensus 166 ~LD~lLgGGI~~Gei~~I~G~sGsGKTTLl~~la~~~~~-----p~~~Gg~~~~viyid~E 221 (400)
T 3lda_A 166 NLDTLLGGGVETGSITELFGEFRTGKSQLCHTLAVTCQI-----PLDIGGGEGKCLYIDTE 221 (400)
T ss_dssp HHHHHTTTSEETTSEEEEEESTTSSHHHHHHHHHHHTTS-----CGGGTCCSSEEEEEESS
T ss_pred hHHHHhcCCcCCCcEEEEEcCCCCChHHHHHHHHHHhcc-----CcccCCCCCcEEEEeCC
Confidence 455555 4567889999999999665432322211 11111234567887643
No 235
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=73.33 E-value=7.1 Score=48.06 Aligned_cols=46 Identities=22% Similarity=0.244 Sum_probs=31.8
Q ss_pred cCCCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEEEEEcCCHHHHHHHH
Q 007814 179 SGRDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFCLIVCPSRELARQTY 236 (588)
Q Consensus 179 ~g~dvii~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Q~~ 236 (588)
.|+++++.+++|+|||......+...+ . .|.+++|+. ..++..+++
T Consensus 1080 ~g~~vll~G~~GtGKT~la~~~~~ea~-k----------~Ge~~~Fit-~ee~~~~L~ 1125 (2050)
T 3cmu_A 1080 MGRIVEIYGPESSGKTTLTLQVIAAAQ-R----------EGKTCAFID-AEHALDPIY 1125 (2050)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHHH-T----------TTCCEEEEC-TTSCCCHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHH-H----------cCCeEEEEE-ccccHHHHH
Confidence 678999999999999977655544443 2 466788876 445555555
No 236
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=72.83 E-value=8.3 Score=38.55 Aligned_cols=27 Identities=26% Similarity=0.106 Sum_probs=19.5
Q ss_pred HHHHHh-----cCCCEEEEecCCchHhHHHHH
Q 007814 173 GLPVVL-----SGRDMIGIAFTGSGKTLVFVL 199 (588)
Q Consensus 173 ~i~~il-----~g~dvii~a~TGsGKTl~~~l 199 (588)
.+..++ .|.-+.+++|.|||||.....
T Consensus 119 ~LD~lL~ggi~~G~i~~I~G~~GsGKTTL~~~ 150 (349)
T 1pzn_A 119 SLDKLLGGGIETQAITEVFGEFGSGKTQLAHT 150 (349)
T ss_dssp HHHHHHTSSEESSEEEEEEESTTSSHHHHHHH
T ss_pred HHHHHhcCCCCCCeEEEEECCCCCCHHHHHHH
Confidence 455555 456788899999999966444
No 237
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=72.82 E-value=4.9 Score=41.38 Aligned_cols=27 Identities=19% Similarity=0.215 Sum_probs=18.1
Q ss_pred HHHHHHHHh--cCCCEEEEecCCchHhHH
Q 007814 170 QVQGLPVVL--SGRDMIGIAFTGSGKTLV 196 (588)
Q Consensus 170 Q~~~i~~il--~g~dvii~a~TGsGKTl~ 196 (588)
+..++..++ .|.-+++++|||||||..
T Consensus 155 ~~~~L~~l~~~~ggii~I~GpnGSGKTTl 183 (418)
T 1p9r_A 155 NHDNFRRLIKRPHGIILVTGPTGSGKSTT 183 (418)
T ss_dssp HHHHHHHHHTSSSEEEEEECSTTSCHHHH
T ss_pred HHHHHHHHHHhcCCeEEEECCCCCCHHHH
Confidence 333444333 445678999999999954
No 238
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=72.38 E-value=3.2 Score=42.27 Aligned_cols=42 Identities=21% Similarity=0.377 Sum_probs=28.5
Q ss_pred cCCCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEEEEEcCCHHH
Q 007814 179 SGRDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFCLIVCPSREL 231 (588)
Q Consensus 179 ~g~dvii~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~Lil~Ptr~L 231 (588)
.+.+++++++||||||...-.-+ ..+.. .+.+++++=|..+.
T Consensus 34 ~~~~~~i~G~~G~GKs~~~~~~~-~~~~~----------~~~~~~~~D~~~~~ 75 (392)
T 4ag6_A 34 TNSNWTILAKPGAGKSFTAKMLL-LREYM----------QGSRVIIIDPEREY 75 (392)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHH-HHHHT----------TTCCEEEEESSCCS
T ss_pred ccCceEEEcCCCCCHHHHHHHHH-HHHHH----------CCCEEEEEeCCcCH
Confidence 56799999999999995543322 22221 35677888887654
No 239
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=72.20 E-value=3.2 Score=38.82 Aligned_cols=53 Identities=25% Similarity=0.171 Sum_probs=30.6
Q ss_pred cCCCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEEEEEcCCHHHHHHHHHHHHHH
Q 007814 179 SGRDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFCLIVCPSRELARQTYEVVEQF 242 (588)
Q Consensus 179 ~g~dvii~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Q~~~~~~~~ 242 (588)
.|.-+++.|++|+|||...+--+.+.+.. .+..++|+.-. +-..++.+.+..+
T Consensus 29 ~G~l~~i~G~pG~GKT~l~l~~~~~~~~~----------~~~~v~~~s~E-~~~~~~~~~~~~~ 81 (251)
T 2zts_A 29 EGTTVLLTGGTGTGKTTFAAQFIYKGAEE----------YGEPGVFVTLE-ERARDLRREMASF 81 (251)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHHHHHHH----------HCCCEEEEESS-SCHHHHHHHHHTT
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHHHh----------cCCCceeeccc-CCHHHHHHHHHHc
Confidence 45678999999999995544333333332 23346666533 3345555555443
No 240
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=72.04 E-value=5.8 Score=36.38 Aligned_cols=70 Identities=16% Similarity=0.258 Sum_probs=44.7
Q ss_pred CCCCEEEEeCccccHHHHHHHHHHc----CCcEEEEeCCCCHHHHHHHHHHHhcCCcEEEEEcCcc------ccCCCCCC
Q 007814 393 TPPPVLIFCENKADVDDIHEYLLLK----GVEAVAVHGGKDQEEREYAISSFKAGKKDVLVATDVA------SKGLDFPD 462 (588)
Q Consensus 393 ~~~~viIF~~s~~~~~~l~~~L~~~----g~~~~~ihg~~~~~~R~~~~~~f~~g~~~vLVaT~~~------~~GlDip~ 462 (588)
.+.++||.++++.-+..+++.+... ++.+..++|+.+..+.... +. ..+|+|+|.-. ...+++..
T Consensus 81 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---~~--~~~iiv~Tp~~l~~~~~~~~~~~~~ 155 (224)
T 1qde_A 81 KAPQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEG---LR--DAQIVVGTPGRVFDNIQRRRFRTDK 155 (224)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECC-------------CT--TCSEEEECHHHHHHHHHTTSSCCTT
T ss_pred CCceEEEEECCHHHHHHHHHHHHHHhcccCceEEEEeCCcchHHHHhc---CC--CCCEEEECHHHHHHHHHhCCcchhh
Confidence 3568999999999999888887654 6788999998775543332 22 37899999522 23456666
Q ss_pred cceEE
Q 007814 463 IQHVI 467 (588)
Q Consensus 463 v~~VI 467 (588)
+++||
T Consensus 156 ~~~iV 160 (224)
T 1qde_A 156 IKMFI 160 (224)
T ss_dssp CCEEE
T ss_pred CcEEE
Confidence 77766
No 241
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=72.03 E-value=2.1 Score=38.28 Aligned_cols=20 Identities=10% Similarity=0.222 Sum_probs=16.2
Q ss_pred hcCCCEEEEecCCchHhHHH
Q 007814 178 LSGRDMIGIAFTGSGKTLVF 197 (588)
Q Consensus 178 l~g~dvii~a~TGsGKTl~~ 197 (588)
+.|+-+++++|+|||||...
T Consensus 3 ~~g~~i~i~GpsGsGKSTL~ 22 (180)
T 1kgd_A 3 HMRKTLVLLGAHGVGRRHIK 22 (180)
T ss_dssp CCCCEEEEECCTTSSHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHH
Confidence 35677889999999999653
No 242
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=71.08 E-value=32 Score=36.20 Aligned_cols=18 Identities=28% Similarity=0.386 Sum_probs=14.2
Q ss_pred CCEEEEecCCchHhHHHH
Q 007814 181 RDMIGIAFTGSGKTLVFV 198 (588)
Q Consensus 181 ~dvii~a~TGsGKTl~~~ 198 (588)
+.+++++++|+|||..+.
T Consensus 102 ~vI~ivG~~GvGKTTl~~ 119 (504)
T 2j37_W 102 NVIMFVGLQGSGKTTTCS 119 (504)
T ss_dssp EEEEEECSTTSSHHHHHH
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 357788999999996643
No 243
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=70.89 E-value=2.4 Score=42.01 Aligned_cols=23 Identities=22% Similarity=0.232 Sum_probs=18.7
Q ss_pred HHHhcCCCEEEEecCCchHhHHH
Q 007814 175 PVVLSGRDMIGIAFTGSGKTLVF 197 (588)
Q Consensus 175 ~~il~g~dvii~a~TGsGKTl~~ 197 (588)
..+..+.++++.||+|+|||...
T Consensus 41 ~~l~~~~~vll~G~pGtGKT~la 63 (331)
T 2r44_A 41 IGICTGGHILLEGVPGLAKTLSV 63 (331)
T ss_dssp HHHHHTCCEEEESCCCHHHHHHH
T ss_pred HHHHcCCeEEEECCCCCcHHHHH
Confidence 34456889999999999999654
No 244
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=70.62 E-value=2.8 Score=42.29 Aligned_cols=20 Identities=40% Similarity=0.383 Sum_probs=17.2
Q ss_pred HhcCCCEEEEecCCchHhHH
Q 007814 177 VLSGRDMIGIAFTGSGKTLV 196 (588)
Q Consensus 177 il~g~dvii~a~TGsGKTl~ 196 (588)
+..|..+++++|||||||..
T Consensus 172 i~~G~~i~ivG~sGsGKSTl 191 (361)
T 2gza_A 172 VQLERVIVVAGETGSGKTTL 191 (361)
T ss_dssp HHTTCCEEEEESSSSCHHHH
T ss_pred HhcCCEEEEECCCCCCHHHH
Confidence 34789999999999999954
No 245
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=70.32 E-value=2.1 Score=41.89 Aligned_cols=56 Identities=20% Similarity=0.254 Sum_probs=30.8
Q ss_pred CCCCCCCCCCCHHHHHHHHHCCCCCCcHHHHHHHHH-HhcCCCEEEEecCCchHhHHH
Q 007814 141 PIKNFKDMRFPEPILKKLKAKGIVQPTPIQVQGLPV-VLSGRDMIGIAFTGSGKTLVF 197 (588)
Q Consensus 141 p~~~f~~~~l~~~l~~~l~~~g~~~p~~~Q~~~i~~-il~g~dvii~a~TGsGKTl~~ 197 (588)
|-.+|+++.-...+.+.|... +..|.......... +..++.+++.||+|+|||+.+
T Consensus 10 ~~~~~~di~G~~~~~~~l~~~-v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la 66 (301)
T 3cf0_A 10 PQVTWEDIGGLEDVKRELQEL-VQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLA 66 (301)
T ss_dssp CCCCGGGSCSCHHHHHHHHHH-HHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHH
T ss_pred CCCCHHHhCCHHHHHHHHHHH-HHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHH
Confidence 345677776666666666543 00000000000111 124678999999999999664
No 246
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=70.17 E-value=2.2 Score=42.44 Aligned_cols=18 Identities=22% Similarity=0.349 Sum_probs=14.6
Q ss_pred CCCEEEEecCCchHhHHH
Q 007814 180 GRDMIGIAFTGSGKTLVF 197 (588)
Q Consensus 180 g~dvii~a~TGsGKTl~~ 197 (588)
++-+++++|||||||.+.
T Consensus 40 ~~lIvI~GPTgsGKTtLa 57 (339)
T 3a8t_A 40 EKLLVLMGATGTGKSRLS 57 (339)
T ss_dssp CEEEEEECSTTSSHHHHH
T ss_pred CceEEEECCCCCCHHHHH
Confidence 346889999999999654
No 247
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=70.14 E-value=11 Score=39.69 Aligned_cols=76 Identities=12% Similarity=0.170 Sum_probs=50.3
Q ss_pred CCEEEEEcCCHHHHHHHHHHHHHHhhcccccCCCCceEEEEEcCcchHHHHHH---H-hcCCcEEEeChHHHHHHHHccc
Q 007814 219 GPFCLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEV---V-KRGVHIVVATPGRLKDMLAKKK 294 (588)
Q Consensus 219 ~~~~Lil~Ptr~La~Q~~~~~~~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~---l-~~~~~IvV~Tp~~L~~~l~~~~ 294 (588)
+...+|++.+..-+..+.+.+.+. +.++..++|+.+..++... + ....+|+|||+..+ ..+
T Consensus 347 ~~~~~ivf~~~~~~~~l~~~L~~~----------~~~v~~~~g~~~~~~r~~i~~~f~~g~~~vLv~T~~~~-----~~G 411 (510)
T 2oca_A 347 DENAFVMFKHVSHGKAIFDLIKNE----------YDKVYYVSGEVDTETRNIMKTLAENGKGIIIVASYGVF-----STG 411 (510)
T ss_dssp TCEEEEEESSHHHHHHHHHHHHTT----------CSSEEEESSSTTHHHHHHHHHHHHHCCSCEEEEEHHHH-----HHS
T ss_pred CCCeEEEEecHHHHHHHHHHHHHc----------CCCeEEEECCCCHHHHHHHHHHHhCCCCCEEEEEcChh-----hcc
Confidence 445556666666665555544443 3478889998876554332 2 23578999997444 346
Q ss_pred CCCCCcceeEecCcc
Q 007814 295 MNLDNCRYLTLDEAD 309 (588)
Q Consensus 295 ~~l~~~~~lViDEah 309 (588)
+++..+++||+..+.
T Consensus 412 iDip~v~~vi~~~~~ 426 (510)
T 2oca_A 412 ISVKNLHHVVLAHGV 426 (510)
T ss_dssp CCCCSEEEEEESSCC
T ss_pred cccccCcEEEEeCCC
Confidence 788899999988777
No 248
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=69.69 E-value=3.1 Score=39.62 Aligned_cols=19 Identities=26% Similarity=0.403 Sum_probs=16.5
Q ss_pred cCCCEEEEecCCchHhHHH
Q 007814 179 SGRDMIGIAFTGSGKTLVF 197 (588)
Q Consensus 179 ~g~dvii~a~TGsGKTl~~ 197 (588)
.+.++++.+++|+|||.++
T Consensus 28 ~~~~vll~G~~GtGKt~la 46 (265)
T 2bjv_A 28 LDKPVLIIGERGTGKELIA 46 (265)
T ss_dssp SCSCEEEECCTTSCHHHHH
T ss_pred CCCCEEEECCCCCcHHHHH
Confidence 5689999999999999654
No 249
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=69.67 E-value=2.6 Score=37.27 Aligned_cols=18 Identities=28% Similarity=0.340 Sum_probs=15.3
Q ss_pred CCCEEEEecCCchHhHHH
Q 007814 180 GRDMIGIAFTGSGKTLVF 197 (588)
Q Consensus 180 g~dvii~a~TGsGKTl~~ 197 (588)
.+.+++.||+|+|||...
T Consensus 43 ~~~~ll~G~~G~GKT~l~ 60 (195)
T 1jbk_A 43 KNNPVLIGEPGVGKTAIV 60 (195)
T ss_dssp SCEEEEECCTTSCHHHHH
T ss_pred CCceEEECCCCCCHHHHH
Confidence 467999999999999654
No 250
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=69.18 E-value=9.5 Score=36.80 Aligned_cols=19 Identities=32% Similarity=0.452 Sum_probs=16.1
Q ss_pred cCCCEEEEecCCchHhHHH
Q 007814 179 SGRDMIGIAFTGSGKTLVF 197 (588)
Q Consensus 179 ~g~dvii~a~TGsGKTl~~ 197 (588)
...++++.||+|+|||.+.
T Consensus 49 ~~~~vll~G~~GtGKT~la 67 (310)
T 1ofh_A 49 TPKNILMIGPTGVGKTEIA 67 (310)
T ss_dssp CCCCEEEECCTTSSHHHHH
T ss_pred CCceEEEECCCCCCHHHHH
Confidence 3678999999999999654
No 251
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=68.97 E-value=4.9 Score=51.08 Aligned_cols=49 Identities=12% Similarity=0.080 Sum_probs=33.9
Q ss_pred CCHHHHHHHHHCCCCCCcHHHHH----HHHHHhcCCCEEEEecCCchHhHHHHH
Q 007814 150 FPEPILKKLKAKGIVQPTPIQVQ----GLPVVLSGRDMIGIAFTGSGKTLVFVL 199 (588)
Q Consensus 150 l~~~l~~~l~~~g~~~p~~~Q~~----~i~~il~g~dvii~a~TGsGKTl~~~l 199 (588)
+...+.+.+.+.|+. +++.+.. ....+...+.++++||||||||.++-.
T Consensus 890 l~~~i~~~~~~~~l~-~~~~~~~K~~ql~e~~~~r~gvmlvGptgsGKTt~~~~ 942 (2695)
T 4akg_A 890 IVQCLKDAGQRSGFS-MSEEFLKKCMQFYYMQKTQQALILVGKAGCGKTATWKT 942 (2695)
T ss_dssp HHHHHHHHHHHHTCC-CCHHHHHHHHHHHHHHHHCSEEEEECSTTSSHHHHHHH
T ss_pred HHHHHHHHHHHcCCc-ccHHHHHHHHHHHHHHHhcceEEEECCCCCCHHHHHHH
Confidence 445667777777764 6665532 233344678899999999999977644
No 252
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=68.80 E-value=6.3 Score=45.79 Aligned_cols=76 Identities=16% Similarity=0.154 Sum_probs=57.4
Q ss_pred hhcCCCCEEEEeCccccHHHHHHHHHHc----CC----cEEEEeCCCCHHHHHHHHHHHhcCCcEEEEEcCc-cccCCC-
Q 007814 390 LQKTPPPVLIFCENKADVDDIHEYLLLK----GV----EAVAVHGGKDQEEREYAISSFKAGKKDVLVATDV-ASKGLD- 459 (588)
Q Consensus 390 l~~~~~~viIF~~s~~~~~~l~~~L~~~----g~----~~~~ihg~~~~~~R~~~~~~f~~g~~~vLVaT~~-~~~GlD- 459 (588)
+...+.++||.++++.-+..+++.+... ++ .+..+||+.+..++....+.+.+ .+|+|+|.- +..-+.
T Consensus 95 ~~~~~~~~lil~PtreLa~Q~~~~l~~l~~~~~i~~~~~v~~~~Gg~~~~~~~~~~~~l~~--~~IlV~TP~~L~~~l~~ 172 (1054)
T 1gku_B 95 LALKGKRCYVIFPTSLLVIQAAETIRKYAEKAGVGTENLIGYYHGRIPKREKENFMQNLRN--FKIVITTTQFLSKHYRE 172 (1054)
T ss_dssp HHTTSCCEEEEESCHHHHHHHHHHHHHHHTTTCCSGGGSEEECCSSCCSHHHHHHHHSGGG--CSEEEEEHHHHHHCSTT
T ss_pred HhhcCCeEEEEeccHHHHHHHHHHHHHHHhhcCCCccceEEEEeCCCChhhHHHHHhhccC--CCEEEEcHHHHHHHHHH
Confidence 3345779999999999999888888653 56 78999999999888777777777 899999962 111111
Q ss_pred CCCcceEE
Q 007814 460 FPDIQHVI 467 (588)
Q Consensus 460 ip~v~~VI 467 (588)
+..+++||
T Consensus 173 L~~l~~lV 180 (1054)
T 1gku_B 173 LGHFDFIF 180 (1054)
T ss_dssp SCCCSEEE
T ss_pred hccCCEEE
Confidence 45677766
No 253
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=68.76 E-value=2.4 Score=40.12 Aligned_cols=19 Identities=26% Similarity=0.352 Sum_probs=15.8
Q ss_pred cCCCEEEEecCCchHhHHH
Q 007814 179 SGRDMIGIAFTGSGKTLVF 197 (588)
Q Consensus 179 ~g~dvii~a~TGsGKTl~~ 197 (588)
..+.+++.+|+|+|||...
T Consensus 38 ~~~~vll~G~~GtGKT~la 56 (262)
T 2qz4_A 38 VPKGALLLGPPGCGKTLLA 56 (262)
T ss_dssp CCCEEEEESCTTSSHHHHH
T ss_pred CCceEEEECCCCCCHHHHH
Confidence 3467999999999999654
No 254
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=68.46 E-value=2.8 Score=38.00 Aligned_cols=20 Identities=20% Similarity=0.208 Sum_probs=16.8
Q ss_pred cCCCEEEEecCCchHhHHHH
Q 007814 179 SGRDMIGIAFTGSGKTLVFV 198 (588)
Q Consensus 179 ~g~dvii~a~TGsGKTl~~~ 198 (588)
.++.+++++++|||||.+.-
T Consensus 24 ~~~~i~l~G~~GsGKsTl~~ 43 (199)
T 3vaa_A 24 AMVRIFLTGYMGAGKTTLGK 43 (199)
T ss_dssp CCCEEEEECCTTSCHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHH
Confidence 57789999999999996643
No 255
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=68.20 E-value=2.2 Score=37.68 Aligned_cols=18 Identities=22% Similarity=0.156 Sum_probs=15.0
Q ss_pred CCCEEEEecCCchHhHHH
Q 007814 180 GRDMIGIAFTGSGKTLVF 197 (588)
Q Consensus 180 g~dvii~a~TGsGKTl~~ 197 (588)
++-++++|++|||||.+.
T Consensus 3 ~~~i~l~G~~GsGKST~a 20 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIV 20 (178)
T ss_dssp CCEEEEECCTTSSHHHHH
T ss_pred ceEEEEECCCCCCHHHHH
Confidence 456889999999999664
No 256
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=68.12 E-value=3 Score=37.94 Aligned_cols=19 Identities=21% Similarity=0.370 Sum_probs=14.9
Q ss_pred cCCCEEEEecCCchHhHHH
Q 007814 179 SGRDMIGIAFTGSGKTLVF 197 (588)
Q Consensus 179 ~g~dvii~a~TGsGKTl~~ 197 (588)
.|+-+.+++|+|+|||...
T Consensus 3 ~g~~i~lvGpsGaGKSTLl 21 (198)
T 1lvg_A 3 GPRPVVLSGPSGAGKSTLL 21 (198)
T ss_dssp --CCEEEECCTTSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 4678999999999999554
No 257
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=67.90 E-value=2.9 Score=37.18 Aligned_cols=19 Identities=32% Similarity=0.282 Sum_probs=15.9
Q ss_pred CCCEEEEecCCchHhHHHH
Q 007814 180 GRDMIGIAFTGSGKTLVFV 198 (588)
Q Consensus 180 g~dvii~a~TGsGKTl~~~ 198 (588)
++.+++++++|||||.+.-
T Consensus 5 ~~~i~l~G~~GsGKst~a~ 23 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGS 23 (185)
T ss_dssp CCEEEEECSTTSSHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHH
Confidence 5678999999999996653
No 258
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=67.47 E-value=5.1 Score=40.61 Aligned_cols=72 Identities=11% Similarity=0.180 Sum_probs=46.4
Q ss_pred CCCEEEEEcCCHHHHHHHHHHHHHHhhcccccCCCCceEEEEEcCcchHHHHHHH---hc-CCcEEEeChHHHHHHHHcc
Q 007814 218 EGPFCLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVV---KR-GVHIVVATPGRLKDMLAKK 293 (588)
Q Consensus 218 ~~~~~Lil~Ptr~La~Q~~~~~~~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l---~~-~~~IvV~Tp~~L~~~l~~~ 293 (588)
.+.++||.|+++.-+..+++.+.+. ++.+..++|+.+..++...+ .. ..+|+|+|. .+ ..
T Consensus 279 ~~~~~lvf~~~~~~~~~l~~~l~~~----------~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~-----~~-~~ 342 (414)
T 3eiq_A 279 TITQAVIFINTRRKVDWLTEKMHAR----------DFTVSAMHGDMDQKERDVIMREFRSGSSRVLITTD-----LL-AR 342 (414)
T ss_dssp CCSSCEEECSCHHHHHHHHHHHHTT----------TCCCEEC---CHHHHHHHHHHHHSCC---CEEECS-----SC-C-
T ss_pred CCCcEEEEeCCHHHHHHHHHHHHhc----------CCeEEEecCCCCHHHHHHHHHHHHcCCCcEEEECC-----cc-cc
Confidence 3457899999999999888777654 67888899988766654443 22 468999993 33 34
Q ss_pred cCCCCCcceeEe
Q 007814 294 KMNLDNCRYLTL 305 (588)
Q Consensus 294 ~~~l~~~~~lVi 305 (588)
++++..+++||.
T Consensus 343 Gidip~v~~Vi~ 354 (414)
T 3eiq_A 343 GIDVQQVSLVIN 354 (414)
T ss_dssp -CCGGGCSCEEE
T ss_pred CCCccCCCEEEE
Confidence 566777887775
No 259
>2lnd_A De novo designed protein, PFK fold; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Artificial gene}
Probab=67.38 E-value=34 Score=25.61 Aligned_cols=62 Identities=16% Similarity=0.328 Sum_probs=46.4
Q ss_pred hHHHHHHHHHHhhcCCCCEEEEeCc--cccHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHh
Q 007814 379 QEAKIVYLLECLQKTPPPVLIFCEN--KADVDDIHEYLLLKGVEAVAVHGGKDQEEREYAISSFK 441 (588)
Q Consensus 379 ~~~k~~~ll~~l~~~~~~viIF~~s--~~~~~~l~~~L~~~g~~~~~ihg~~~~~~R~~~~~~f~ 441 (588)
+...+..++..++..+.|.+||++. .+++.++.+.-++.|+...++.+.- +++-..-.+.|.
T Consensus 36 ssqdirdiiksmkdngkplvvfvngasqndvnefqneakkegvsydvlkstd-peeltqrvrefl 99 (112)
T 2lnd_A 36 SSQDIRDIIKSMKDNGKPLVVFVNGASQNDVNEFQNEAKKEGVSYDVLKSTD-PEELTQRVREFL 99 (112)
T ss_dssp SHHHHHHHHHHHTTCCSCEEEEECSCCHHHHHHHHHHHHHHTCEEEEEECCC-HHHHHHHHHHHH
T ss_pred chhhHHHHHHHHHhcCCeEEEEecCcccccHHHHHHHHHhcCcchhhhccCC-HHHHHHHHHHHH
Confidence 3456677888888999999999985 5678888888888999988887754 444444445553
No 260
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=67.33 E-value=7.4 Score=40.14 Aligned_cols=67 Identities=12% Similarity=0.072 Sum_probs=46.5
Q ss_pred CCEEEEEcCCHHHHHHHHHHHHHHhhcccccCCCCceEEEEEcCcchHHHHHHHh-cCCcEEEeChHHHHHHHHcccCCC
Q 007814 219 GPFCLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVK-RGVHIVVATPGRLKDMLAKKKMNL 297 (588)
Q Consensus 219 ~~~~Lil~Ptr~La~Q~~~~~~~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~-~~~~IvV~Tp~~L~~~l~~~~~~l 297 (588)
+.++||+||++.-+..+++.+.+. ++++..++|+. .......+. ...+|+||| +.+.. ++++
T Consensus 171 ~~~~lVF~~~~~~~~~l~~~L~~~----------~~~v~~lhg~~-r~~~~~~f~~g~~~vLVaT-----~v~e~-GiDi 233 (431)
T 2v6i_A 171 DGRTVWFVHSIKQGAEIGTCLQKA----------GKKVLYLNRKT-FESEYPKCKSEKWDFVITT-----DISEM-GANF 233 (431)
T ss_dssp SSCEEEECSSHHHHHHHHHHHHHT----------TCCEEEESTTT-HHHHTTHHHHSCCSEEEEC-----GGGGT-SCCC
T ss_pred CCCEEEEeCCHHHHHHHHHHHHHc----------CCeEEEeCCcc-HHHHHHhhcCCCCeEEEEC-----chHHc-Cccc
Confidence 447999999999999988888775 67788888873 222333333 458999999 55543 4555
Q ss_pred CCccee
Q 007814 298 DNCRYL 303 (588)
Q Consensus 298 ~~~~~l 303 (588)
. +..|
T Consensus 234 p-~~~V 238 (431)
T 2v6i_A 234 K-ADRV 238 (431)
T ss_dssp C-CSEE
T ss_pred C-CcEE
Confidence 4 4444
No 261
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=67.12 E-value=5.5 Score=43.55 Aligned_cols=67 Identities=22% Similarity=0.272 Sum_probs=49.9
Q ss_pred CCCEEEEEcCCHHHHHHHHHHHHHHhhcccccCCCCceEEEEEcCcchHHHHHHHhcCCcEEEeChHHHHHHHHcccCCC
Q 007814 218 EGPFCLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMNL 297 (588)
Q Consensus 218 ~~~~~Lil~Ptr~La~Q~~~~~~~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IvV~Tp~~L~~~l~~~~~~l 297 (588)
.+.++||.|||+.-+.++++.+.+. ++++..++|+.+..+. ...+.+|+||| +.+.. .+++
T Consensus 395 ~~~~vLVFv~Tr~~ae~la~~L~~~----------g~~v~~lHG~l~q~er---~~~~~~VLVAT-----dVaer-GIDI 455 (666)
T 3o8b_A 395 RGGRHLIFCHSKKKCDELAAKLSGL----------GINAVAYYRGLDVSVI---PTIGDVVVVAT-----DALMT-GYTG 455 (666)
T ss_dssp SSSEEEEECSCHHHHHHHHHHHHTT----------TCCEEEECTTSCGGGS---CSSSCEEEEEC-----TTHHH-HCCC
T ss_pred cCCcEEEEeCCHHHHHHHHHHHHhC----------CCcEEEecCCCCHHHH---HhCCCcEEEEC-----ChHHc-cCCC
Confidence 4568999999999999988887764 6889999998776542 23567999999 55554 3445
Q ss_pred CCcceeE
Q 007814 298 DNCRYLT 304 (588)
Q Consensus 298 ~~~~~lV 304 (588)
. +++||
T Consensus 456 d-V~~VI 461 (666)
T 3o8b_A 456 D-FDSVI 461 (666)
T ss_dssp C-BSEEE
T ss_pred C-CcEEE
Confidence 4 77666
No 262
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=66.71 E-value=2.5 Score=37.49 Aligned_cols=21 Identities=19% Similarity=0.126 Sum_probs=17.2
Q ss_pred hcCCCEEEEecCCchHhHHHH
Q 007814 178 LSGRDMIGIAFTGSGKTLVFV 198 (588)
Q Consensus 178 l~g~dvii~a~TGsGKTl~~~ 198 (588)
..++.+++++++|||||.+.-
T Consensus 9 ~~~~~i~i~G~~GsGKst~~~ 29 (180)
T 3iij_A 9 MLLPNILLTGTPGVGKTTLGK 29 (180)
T ss_dssp CCCCCEEEECSTTSSHHHHHH
T ss_pred ccCCeEEEEeCCCCCHHHHHH
Confidence 356789999999999996643
No 263
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=66.70 E-value=2.9 Score=41.07 Aligned_cols=16 Identities=31% Similarity=0.289 Sum_probs=13.1
Q ss_pred CEEEEecCCchHhHHH
Q 007814 182 DMIGIAFTGSGKTLVF 197 (588)
Q Consensus 182 dvii~a~TGsGKTl~~ 197 (588)
-+++++|||||||..+
T Consensus 12 ~i~i~GptgsGKt~la 27 (316)
T 3foz_A 12 AIFLMGPTASGKTALA 27 (316)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred EEEEECCCccCHHHHH
Confidence 3678899999999654
No 264
>1z5z_A Helicase of the SNF2/RAD54 family; hydrolase, recombination, hydrolase-recombination complex; 2.00A {Sulfolobus solfataricus} SCOP: c.37.1.19
Probab=66.70 E-value=21 Score=34.04 Aligned_cols=95 Identities=17% Similarity=0.231 Sum_probs=60.6
Q ss_pred cCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEEEEEcCCHHHHHHHHHHHHHHhhcccccCCCCceEEEEEcCcchHH
Q 007814 188 FTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFCLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRS 267 (588)
Q Consensus 188 ~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Q~~~~~~~~~~~~~~~~~~~i~~~~~~gg~~~~~ 267 (588)
...+||-.+ +.-++..+.. .+.++||.+.++..+..+.+.+.... ++.+..++|+.+..+
T Consensus 92 ~~~s~K~~~-L~~ll~~~~~----------~~~kvlIFs~~~~~~~~l~~~L~~~~---------g~~~~~l~G~~~~~~ 151 (271)
T 1z5z_A 92 VRRSGKMIR-TMEIIEEALD----------EGDKIAIFTQFVDMGKIIRNIIEKEL---------NTEVPFLYGELSKKE 151 (271)
T ss_dssp STTCHHHHH-HHHHHHHHHH----------TTCCEEEEESCHHHHHHHHHHHHHHH---------CSCCCEECTTSCHHH
T ss_pred cccCHHHHH-HHHHHHHHHh----------CCCeEEEEeccHHHHHHHHHHHHHhc---------CCcEEEEECCCCHHH
Confidence 456888754 4444444332 35689999999998888887776632 566778899887655
Q ss_pred HHH---HHhcC--Cc-EEEeChHHHHHHHHcccCCCCCcceeEecCc
Q 007814 268 QLE---VVKRG--VH-IVVATPGRLKDMLAKKKMNLDNCRYLTLDEA 308 (588)
Q Consensus 268 ~~~---~l~~~--~~-IvV~Tp~~L~~~l~~~~~~l~~~~~lViDEa 308 (588)
+.. .+..+ +. ++++| +. ...++++..+++||+=+.
T Consensus 152 R~~~i~~F~~~~~~~v~L~st-----~~-~g~Glnl~~a~~VI~~d~ 192 (271)
T 1z5z_A 152 RDDIISKFQNNPSVKFIVLSV-----KA-GGFGINLTSANRVIHFDR 192 (271)
T ss_dssp HHHHHHHHHHCTTCCEEEEEC-----CT-TCCCCCCTTCSEEEECSC
T ss_pred HHHHHHHhcCCCCCCEEEEeh-----hh-hcCCcCcccCCEEEEECC
Confidence 543 33333 45 55565 22 245677888887775443
No 265
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=66.69 E-value=3.2 Score=38.01 Aligned_cols=19 Identities=26% Similarity=0.195 Sum_probs=15.5
Q ss_pred cCCCEEEEecCCchHhHHH
Q 007814 179 SGRDMIGIAFTGSGKTLVF 197 (588)
Q Consensus 179 ~g~dvii~a~TGsGKTl~~ 197 (588)
.|+-++++||+|+|||...
T Consensus 7 ~g~~i~l~GpsGsGKsTl~ 25 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKGTVR 25 (208)
T ss_dssp CCCEEEEECCTTSCHHHHH
T ss_pred CCcEEEEECcCCCCHHHHH
Confidence 4667888999999999654
No 266
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=66.18 E-value=2.7 Score=41.34 Aligned_cols=17 Identities=24% Similarity=0.085 Sum_probs=13.5
Q ss_pred CCEEEEecCCchHhHHH
Q 007814 181 RDMIGIAFTGSGKTLVF 197 (588)
Q Consensus 181 ~dvii~a~TGsGKTl~~ 197 (588)
+-+++++|||||||..+
T Consensus 4 ~~i~i~GptgsGKt~la 20 (322)
T 3exa_A 4 KLVAIVGPTAVGKTKTS 20 (322)
T ss_dssp EEEEEECCTTSCHHHHH
T ss_pred cEEEEECCCcCCHHHHH
Confidence 34678899999999654
No 267
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=65.71 E-value=3.3 Score=41.17 Aligned_cols=19 Identities=42% Similarity=0.461 Sum_probs=16.7
Q ss_pred hcCCCEEEEecCCchHhHH
Q 007814 178 LSGRDMIGIAFTGSGKTLV 196 (588)
Q Consensus 178 l~g~dvii~a~TGsGKTl~ 196 (588)
..|..+.+++|||||||..
T Consensus 169 ~~g~~v~i~G~~GsGKTTl 187 (330)
T 2pt7_A 169 AIGKNVIVCGGTGSGKTTY 187 (330)
T ss_dssp HHTCCEEEEESTTSCHHHH
T ss_pred cCCCEEEEECCCCCCHHHH
Confidence 3789999999999999954
No 268
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=65.37 E-value=3.5 Score=37.66 Aligned_cols=20 Identities=15% Similarity=0.335 Sum_probs=16.7
Q ss_pred hcCCCEEEEecCCchHhHHH
Q 007814 178 LSGRDMIGIAFTGSGKTLVF 197 (588)
Q Consensus 178 l~g~dvii~a~TGsGKTl~~ 197 (588)
+.|+-++++||+|+|||...
T Consensus 17 ~~g~~ivl~GPSGaGKsTL~ 36 (197)
T 3ney_A 17 QGRKTLVLIGASGVGRSHIK 36 (197)
T ss_dssp CSCCEEEEECCTTSSHHHHH
T ss_pred CCCCEEEEECcCCCCHHHHH
Confidence 36788899999999999653
No 269
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=65.23 E-value=12 Score=35.88 Aligned_cols=44 Identities=18% Similarity=0.124 Sum_probs=30.6
Q ss_pred HHHHHHHHHCCCCCCcHHHHHH-HHHHhcCC-----CEEEEecCCchHhHHHH
Q 007814 152 EPILKKLKAKGIVQPTPIQVQG-LPVVLSGR-----DMIGIAFTGSGKTLVFV 198 (588)
Q Consensus 152 ~~l~~~l~~~g~~~p~~~Q~~~-i~~il~g~-----dvii~a~TGsGKTl~~~ 198 (588)
..+.+.|+-.|+. |++... +...+.++ .+++.+|.|+|||+.+.
T Consensus 73 n~i~~~l~~qg~~---~~~~~~~l~~~l~~~~~~~n~~~l~GppgtGKt~~a~ 122 (267)
T 1u0j_A 73 NRIYKILELNGYD---PQYAASVFLGWATKKFGKRNTIWLFGPATTGKTNIAE 122 (267)
T ss_dssp CHHHHHHHHTTCC---HHHHHHHHHHHHTTCSTTCCEEEEECSTTSSHHHHHH
T ss_pred HHHHHHHHHcCCC---HHHHHHHHHHHHhCCCCCCcEEEEECCCCCCHHHHHH
Confidence 4778888877764 555433 44455543 48888999999997654
No 270
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=65.00 E-value=2.9 Score=38.22 Aligned_cols=18 Identities=22% Similarity=0.252 Sum_probs=15.1
Q ss_pred cCCCEEEEecCCchHhHH
Q 007814 179 SGRDMIGIAFTGSGKTLV 196 (588)
Q Consensus 179 ~g~dvii~a~TGsGKTl~ 196 (588)
.|+-+++.+|||+|||..
T Consensus 33 ~g~~ilI~GpsGsGKStL 50 (205)
T 2qmh_A 33 YGLGVLITGDSGVGKSET 50 (205)
T ss_dssp TTEEEEEECCCTTTTHHH
T ss_pred CCEEEEEECCCCCCHHHH
Confidence 466789999999999854
No 271
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=64.94 E-value=3 Score=39.07 Aligned_cols=73 Identities=19% Similarity=0.279 Sum_probs=49.1
Q ss_pred CCCCEEEEeCccccHHHHHHHHHHc----CCcEEEEeCCCCHHHHHHHHHHHhcCCcEEEEEcCc-----ccc---CCCC
Q 007814 393 TPPPVLIFCENKADVDDIHEYLLLK----GVEAVAVHGGKDQEEREYAISSFKAGKKDVLVATDV-----ASK---GLDF 460 (588)
Q Consensus 393 ~~~~viIF~~s~~~~~~l~~~L~~~----g~~~~~ihg~~~~~~R~~~~~~f~~g~~~vLVaT~~-----~~~---GlDi 460 (588)
.+.++||.++++.-+..+++.+... ++.+..++|+..... .......+..+|+|+|.- +.. .+++
T Consensus 97 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~~~ 173 (245)
T 3dkp_A 97 KGFRALIISPTRELASQIHRELIKISEGTGFRIHMIHKAAVAAK---KFGPKSSKKFDILVTTPNRLIYLLKQDPPGIDL 173 (245)
T ss_dssp SSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEECCCHHHHHHT---TTSTTSCCCCCEEEECHHHHHHHHHSSSCSCCC
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHHhcccCceEEEEecCccHHH---HhhhhhcCCCCEEEECHHHHHHHHHhCCCCccc
Confidence 3457999999999999999888765 667777776532211 111223567789999942 112 4777
Q ss_pred CCcceEEe
Q 007814 461 PDIQHVIN 468 (588)
Q Consensus 461 p~v~~VI~ 468 (588)
.++++||.
T Consensus 174 ~~~~~lVi 181 (245)
T 3dkp_A 174 ASVEWLVV 181 (245)
T ss_dssp TTCCEEEE
T ss_pred ccCcEEEE
Confidence 88887773
No 272
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=64.67 E-value=11 Score=37.74 Aligned_cols=18 Identities=44% Similarity=0.545 Sum_probs=15.6
Q ss_pred CCCEEEEecCCchHhHHH
Q 007814 180 GRDMIGIAFTGSGKTLVF 197 (588)
Q Consensus 180 g~dvii~a~TGsGKTl~~ 197 (588)
..++++.+|+|+|||.++
T Consensus 72 ~~~ill~Gp~GtGKT~la 89 (376)
T 1um8_A 72 KSNILLIGPTGSGKTLMA 89 (376)
T ss_dssp CCCEEEECCTTSSHHHHH
T ss_pred CCCEEEECCCCCCHHHHH
Confidence 568999999999999664
No 273
>2l82_A Designed protein OR32; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, de novo protein; NMR {Artificial gene}
Probab=64.19 E-value=28 Score=27.70 Aligned_cols=51 Identities=20% Similarity=0.356 Sum_probs=43.2
Q ss_pred EEEEeCccccHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhcCCcEE
Q 007814 397 VLIFCENKADVDDIHEYLLLKGVEAVAVHGGKDQEEREYAISSFKAGKKDV 447 (588)
Q Consensus 397 viIF~~s~~~~~~l~~~L~~~g~~~~~ihg~~~~~~R~~~~~~f~~g~~~v 447 (588)
.+||.+...-...+...++..|+.++.++++.+...|..-++.|.....+|
T Consensus 5 fvvfssdpeilkeivreikrqgvrvvllysdqdekrrrerleefekqgvdv 55 (162)
T 2l82_A 5 FVVFSSDPEILKEIVREIKRQGVRVVLLYSDQDEKRRRERLEEFEKQGVDV 55 (162)
T ss_dssp EEEEESCHHHHHHHHHHHHHTTCEEEEEECCSCHHHHHHHHHHHHTTTCEE
T ss_pred EEEecCCHHHHHHHHHHHHhCCeEEEEEecCchHHHHHHHHHHHHHcCCce
Confidence 467888888888888899999999999999999999999999998654443
No 274
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=64.13 E-value=3.1 Score=37.21 Aligned_cols=19 Identities=26% Similarity=0.399 Sum_probs=16.1
Q ss_pred cCCCEEEEecCCchHhHHH
Q 007814 179 SGRDMIGIAFTGSGKTLVF 197 (588)
Q Consensus 179 ~g~dvii~a~TGsGKTl~~ 197 (588)
.+..+++++++|||||.+.
T Consensus 9 ~~~~I~l~G~~GsGKSTv~ 27 (184)
T 1y63_A 9 KGINILITGTPGTGKTSMA 27 (184)
T ss_dssp SSCEEEEECSTTSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 4678999999999999664
No 275
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=64.10 E-value=42 Score=35.35 Aligned_cols=21 Identities=29% Similarity=0.401 Sum_probs=16.5
Q ss_pred cCCCEEEEecCCchHhHHHHH
Q 007814 179 SGRDMIGIAFTGSGKTLVFVL 199 (588)
Q Consensus 179 ~g~dvii~a~TGsGKTl~~~l 199 (588)
.|.-+++.+++|+|||.....
T Consensus 280 ~G~i~~i~G~~GsGKSTLl~~ 300 (525)
T 1tf7_A 280 KDSIILATGATGTGKTLLVSR 300 (525)
T ss_dssp SSCEEEEEECTTSSHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHH
Confidence 567788899999999965433
No 276
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=63.94 E-value=3.6 Score=39.12 Aligned_cols=15 Identities=33% Similarity=0.076 Sum_probs=12.8
Q ss_pred EEEEecCCchHhHHH
Q 007814 183 MIGIAFTGSGKTLVF 197 (588)
Q Consensus 183 vii~a~TGsGKTl~~ 197 (588)
+++++|||||||..+
T Consensus 4 i~I~G~~GSGKSTla 18 (253)
T 2ze6_A 4 HLIYGPTCSGKTDMA 18 (253)
T ss_dssp EEEECCTTSSHHHHH
T ss_pred EEEECCCCcCHHHHH
Confidence 678899999999654
No 277
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=63.81 E-value=13 Score=41.55 Aligned_cols=82 Identities=15% Similarity=0.228 Sum_probs=58.0
Q ss_pred CCCEEEEEcCCHHHHHHHHHHHHHHhhcc-cccCCCCceEEEEEcCcchHHHHHHHhc---------CCcEEEeChHHHH
Q 007814 218 EGPFCLIVCPSRELARQTYEVVEQFLTPM-RDAGYPDLRTLLCIGGVDMRSQLEVVKR---------GVHIVVATPGRLK 287 (588)
Q Consensus 218 ~~~~~Lil~Ptr~La~Q~~~~~~~~~~~~-~~~~~~~i~~~~~~gg~~~~~~~~~l~~---------~~~IvV~Tp~~L~ 287 (588)
.+..+||.||++.-+..+++.+.+.+..+ ......++.+..++|+.+..++...+.. ...|||||
T Consensus 302 ~~g~iLVF~~~~~~i~~l~~~L~~~~~~l~~~~~~~~~~v~~lhg~l~~~eR~~v~~~f~~~~~~~g~~kVlVAT----- 376 (773)
T 2xau_A 302 EAGDILLFLTGEDEIEDAVRKISLEGDQLVREEGCGPLSVYPLYGSLPPHQQQRIFEPAPESHNGRPGRKVVIST----- 376 (773)
T ss_dssp CSCEEEEECSCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECTTCCHHHHGGGGSCCCCCSSSSCCEEEEEEC-----
T ss_pred CCCCEEEECCCHHHHHHHHHHHHHHHHhhcccccCCCeEEEEeCCCCCHHHHHHHHhhcccccCCCCceEEEEeC-----
Confidence 35689999999999999998887643322 0112247889999999887776554432 35899999
Q ss_pred HHHHcccCCCCCcceeEe
Q 007814 288 DMLAKKKMNLDNCRYLTL 305 (588)
Q Consensus 288 ~~l~~~~~~l~~~~~lVi 305 (588)
+.+. ..+++..+.+||-
T Consensus 377 ~iae-~GidIp~v~~VId 393 (773)
T 2xau_A 377 NIAE-TSLTIDGIVYVVD 393 (773)
T ss_dssp THHH-HTCCCTTEEEEEE
T ss_pred cHHH-hCcCcCCeEEEEe
Confidence 4544 3667788887774
No 278
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=63.77 E-value=3.3 Score=37.43 Aligned_cols=16 Identities=25% Similarity=0.447 Sum_probs=13.9
Q ss_pred CCEEEEecCCchHhHH
Q 007814 181 RDMIGIAFTGSGKTLV 196 (588)
Q Consensus 181 ~dvii~a~TGsGKTl~ 196 (588)
|-++++||+|+|||.+
T Consensus 2 RpIVi~GPSG~GK~Tl 17 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTL 17 (186)
T ss_dssp CCEEEECCTTSSHHHH
T ss_pred CEEEEECCCCCCHHHH
Confidence 5689999999999954
No 279
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=63.73 E-value=3 Score=36.39 Aligned_cols=16 Identities=25% Similarity=0.306 Sum_probs=13.2
Q ss_pred CEEEEecCCchHhHHH
Q 007814 182 DMIGIAFTGSGKTLVF 197 (588)
Q Consensus 182 dvii~a~TGsGKTl~~ 197 (588)
-++++|++|||||...
T Consensus 3 ~I~l~G~~GsGKsT~a 18 (179)
T 3lw7_A 3 VILITGMPGSGKSEFA 18 (179)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 3678899999999654
No 280
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=63.29 E-value=3.6 Score=37.47 Aligned_cols=20 Identities=15% Similarity=0.135 Sum_probs=16.8
Q ss_pred hcCCCEEEEecCCchHhHHH
Q 007814 178 LSGRDMIGIAFTGSGKTLVF 197 (588)
Q Consensus 178 l~g~dvii~a~TGsGKTl~~ 197 (588)
..|+-+++++|+|||||...
T Consensus 10 ~~~~~i~l~G~sGsGKsTl~ 29 (204)
T 2qor_A 10 ARIPPLVVCGPSGVGKGTLI 29 (204)
T ss_dssp CCCCCEEEECCTTSCHHHHH
T ss_pred ccCCEEEEECCCCCCHHHHH
Confidence 46788999999999999654
No 281
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=63.15 E-value=2.5 Score=43.16 Aligned_cols=54 Identities=20% Similarity=0.291 Sum_probs=32.5
Q ss_pred CCCCCCCCCCCHHHHHHHHHC-C--CCCCcHHHHHHHHHHhcCCCEEEEecCCchHhHHH
Q 007814 141 PIKNFKDMRFPEPILKKLKAK-G--IVQPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVF 197 (588)
Q Consensus 141 p~~~f~~~~l~~~l~~~l~~~-g--~~~p~~~Q~~~i~~il~g~dvii~a~TGsGKTl~~ 197 (588)
|-.+|++.+=-....+.|++. - +..|.-++.-.+ --.+.+++.||+|+|||+.+
T Consensus 143 p~v~~~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi---~~prGvLL~GPPGTGKTllA 199 (405)
T 4b4t_J 143 PDSTYDMVGGLTKQIKEIKEVIELPVKHPELFESLGI---AQPKGVILYGPPGTGKTLLA 199 (405)
T ss_dssp CSCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTC---CCCCCEEEESCSSSSHHHHH
T ss_pred CCCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCC---CCCCceEEeCCCCCCHHHHH
Confidence 445788887556666666543 1 122222222111 13478999999999999664
No 282
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}
Probab=63.14 E-value=9.1 Score=42.01 Aligned_cols=69 Identities=10% Similarity=0.091 Sum_probs=47.7
Q ss_pred CCCEEEEEcCCHHHHHHHHHHHHHHhhcccccCCCCceEEEEEcCcchHHHHHHHh-cCCcEEEeChHHHHHHHHcccCC
Q 007814 218 EGPFCLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVK-RGVHIVVATPGRLKDMLAKKKMN 296 (588)
Q Consensus 218 ~~~~~Lil~Ptr~La~Q~~~~~~~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~-~~~~IvV~Tp~~L~~~l~~~~~~ 296 (588)
.+.++||.||++.-+..+++.+.+. ++++..++|. ........+. ...+|+||| +.+. ..++
T Consensus 409 ~~~~~lVF~~s~~~~e~la~~L~~~----------g~~v~~lHg~-eR~~v~~~F~~g~~~VLVaT-----dv~e-~GID 471 (673)
T 2wv9_A 409 YAGKTVWFVASVKMSNEIAQCLQRA----------GKRVIQLNRK-SYDTEYPKCKNGDWDFVITT-----DISE-MGAN 471 (673)
T ss_dssp CCSCEEEECSSHHHHHHHHHHHHTT----------TCCEEEECSS-SHHHHGGGGGTCCCSEEEEC-----GGGG-TTCC
T ss_pred CCCCEEEEECCHHHHHHHHHHHHhC----------CCeEEEeChH-HHHHHHHHHHCCCceEEEEC-----chhh-ccee
Confidence 3567999999999999888777654 6788888884 2222223333 357899999 5554 4556
Q ss_pred CCCcceeE
Q 007814 297 LDNCRYLT 304 (588)
Q Consensus 297 l~~~~~lV 304 (588)
+. +++||
T Consensus 472 ip-v~~VI 478 (673)
T 2wv9_A 472 FG-ASRVI 478 (673)
T ss_dssp CC-CSEEE
T ss_pred eC-CcEEE
Confidence 66 77665
No 283
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=63.09 E-value=3.9 Score=36.97 Aligned_cols=20 Identities=25% Similarity=0.144 Sum_probs=16.4
Q ss_pred hcCCCEEEEecCCchHhHHH
Q 007814 178 LSGRDMIGIAFTGSGKTLVF 197 (588)
Q Consensus 178 l~g~dvii~a~TGsGKTl~~ 197 (588)
..|.-++++||+|||||...
T Consensus 4 ~~g~~i~l~G~~GsGKSTl~ 23 (207)
T 2j41_A 4 EKGLLIVLSGPSGVGKGTVR 23 (207)
T ss_dssp CCCCEEEEECSTTSCHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHH
Confidence 35777889999999999654
No 284
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=62.49 E-value=3.7 Score=36.63 Aligned_cols=19 Identities=26% Similarity=0.405 Sum_probs=15.9
Q ss_pred cCCCEEEEecCCchHhHHH
Q 007814 179 SGRDMIGIAFTGSGKTLVF 197 (588)
Q Consensus 179 ~g~dvii~a~TGsGKTl~~ 197 (588)
.|.-+++++|+|||||...
T Consensus 8 ~g~~i~l~G~~GsGKSTl~ 26 (191)
T 1zp6_A 8 GGNILLLSGHPGSGKSTIA 26 (191)
T ss_dssp TTEEEEEEECTTSCHHHHH
T ss_pred CCeEEEEECCCCCCHHHHH
Confidence 5677899999999999653
No 285
>1wv9_A Rhodanese homolog TT1651; CDC25, phosphatase, sulfurtransferase, structural genomics, NPPSFA; 2.00A {Thermus thermophilus}
Probab=62.13 E-value=5.7 Score=31.01 Aligned_cols=35 Identities=31% Similarity=0.525 Sum_probs=31.2
Q ss_pred CCEEEEeCccccHHHHHHHHHHcCCcEEEEeCCCC
Q 007814 395 PPVLIFCENKADVDDIHEYLLLKGVEAVAVHGGKD 429 (588)
Q Consensus 395 ~~viIF~~s~~~~~~l~~~L~~~g~~~~~ihg~~~ 429 (588)
.++++||.+-..+...+..|...|+.+..+.||+.
T Consensus 54 ~~ivvyC~~g~rs~~a~~~L~~~G~~v~~l~GG~~ 88 (94)
T 1wv9_A 54 RPLLLVCEKGLLSQVAALYLEAEGYEAMSLEGGLQ 88 (94)
T ss_dssp SCEEEECSSSHHHHHHHHHHHHHTCCEEEETTGGG
T ss_pred CCEEEEcCCCChHHHHHHHHHHcCCcEEEEcccHH
Confidence 78999999998999999999999999777888864
No 286
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=62.13 E-value=23 Score=36.51 Aligned_cols=19 Identities=21% Similarity=0.204 Sum_probs=14.5
Q ss_pred CCEEEEecCCchHhHHHHH
Q 007814 181 RDMIGIAFTGSGKTLVFVL 199 (588)
Q Consensus 181 ~dvii~a~TGsGKTl~~~l 199 (588)
+.+++++++|+|||.+..-
T Consensus 101 ~vI~ivG~~GvGKTT~a~~ 119 (433)
T 2xxa_A 101 AVVLMAGLQGAGKTTSVGK 119 (433)
T ss_dssp EEEEEECSTTSSHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHH
Confidence 4577779999999966543
No 287
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=61.97 E-value=4.9 Score=35.16 Aligned_cols=18 Identities=22% Similarity=0.366 Sum_probs=15.2
Q ss_pred CCCEEEEecCCchHhHHH
Q 007814 180 GRDMIGIAFTGSGKTLVF 197 (588)
Q Consensus 180 g~dvii~a~TGsGKTl~~ 197 (588)
+..++++++.|||||.+.
T Consensus 4 ~~~i~l~G~~GsGKSTl~ 21 (173)
T 1kag_A 4 KRNIFLVGPMGAGKSTIG 21 (173)
T ss_dssp CCCEEEECCTTSCHHHHH
T ss_pred CCeEEEECCCCCCHHHHH
Confidence 567899999999999654
No 288
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Probab=61.86 E-value=20 Score=39.35 Aligned_cols=73 Identities=22% Similarity=0.217 Sum_probs=54.7
Q ss_pred EEEEcCCHHHHHHHHHHHHHHhhcccccCCCCceEEEEEcCcchH---HHHHHHhc---CCcEEEeChHHHHHHHHcccC
Q 007814 222 CLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMR---SQLEVVKR---GVHIVVATPGRLKDMLAKKKM 295 (588)
Q Consensus 222 ~Lil~Ptr~La~Q~~~~~~~~~~~~~~~~~~~i~~~~~~gg~~~~---~~~~~l~~---~~~IvV~Tp~~L~~~l~~~~~ 295 (588)
.+|+|+|+.-+.++.+.+.+. ++.+..++|+.+.. .+...+.. ..+|+||| +.+ ..++
T Consensus 323 ~iIf~~s~~~ie~la~~L~~~----------g~~v~~lHG~L~~~~R~~~~~~F~~~~g~~~VLVAT-----di~-e~Gl 386 (677)
T 3rc3_A 323 DCIVCFSKNDIYSVSRQIEIR----------GLESAVIYGSLPPGTKLAQAKKFNDPNDPCKILVAT-----DAI-GMGL 386 (677)
T ss_dssp EEEECSSHHHHHHHHHHHHHT----------TCCCEEECTTSCHHHHHHHHHHHHCTTSSCCEEEEC-----GGG-GSSC
T ss_pred CEEEEcCHHHHHHHHHHHHhc----------CCCeeeeeccCCHHHHHHHHHHHHccCCCeEEEEeC-----cHH-HCCc
Confidence 467799998888888777764 67889999998876 44455553 37999999 444 4467
Q ss_pred CCCCcceeEecCcccc
Q 007814 296 NLDNCRYLTLDEADRL 311 (588)
Q Consensus 296 ~l~~~~~lViDEah~l 311 (588)
++ .+++||.-...+.
T Consensus 387 Di-~v~~VI~~~~~k~ 401 (677)
T 3rc3_A 387 NL-SIRRIIFYSLIKP 401 (677)
T ss_dssp CC-CBSEEEESCSBC-
T ss_pred Cc-CccEEEECCcccc
Confidence 78 8999998888664
No 289
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=61.58 E-value=5 Score=39.28 Aligned_cols=19 Identities=32% Similarity=0.349 Sum_probs=16.5
Q ss_pred cCCCEEEEecCCchHhHHH
Q 007814 179 SGRDMIGIAFTGSGKTLVF 197 (588)
Q Consensus 179 ~g~dvii~a~TGsGKTl~~ 197 (588)
...++++.+++|+|||.++
T Consensus 24 ~~~~vLi~Ge~GtGKt~lA 42 (304)
T 1ojl_A 24 SDATVLIHGDSGTGKELVA 42 (304)
T ss_dssp TTSCEEEESCTTSCHHHHH
T ss_pred CCCcEEEECCCCchHHHHH
Confidence 5679999999999999664
No 290
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=61.06 E-value=3.7 Score=36.56 Aligned_cols=19 Identities=16% Similarity=0.204 Sum_probs=15.0
Q ss_pred cCCCEEEEecCCchHhHHH
Q 007814 179 SGRDMIGIAFTGSGKTLVF 197 (588)
Q Consensus 179 ~g~dvii~a~TGsGKTl~~ 197 (588)
.+.-+++.+++|||||...
T Consensus 2 ~~~~I~i~G~~GsGKsT~~ 20 (192)
T 1kht_A 2 KNKVVVVTGVPGVGSTTSS 20 (192)
T ss_dssp -CCEEEEECCTTSCHHHHH
T ss_pred CCeEEEEECCCCCCHHHHH
Confidence 3566889999999999654
No 291
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=60.98 E-value=5.5 Score=37.81 Aligned_cols=21 Identities=48% Similarity=0.585 Sum_probs=17.7
Q ss_pred hcCCCEEEEecCCchHhHHHH
Q 007814 178 LSGRDMIGIAFTGSGKTLVFV 198 (588)
Q Consensus 178 l~g~dvii~a~TGsGKTl~~~ 198 (588)
+.|+.+++++++|||||.+.-
T Consensus 46 l~g~~i~l~G~~GsGKSTl~~ 66 (250)
T 3nwj_A 46 LNGRSMYLVGMMGSGKTTVGK 66 (250)
T ss_dssp HTTCCEEEECSTTSCHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHH
Confidence 359999999999999996643
No 292
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=60.97 E-value=11 Score=39.03 Aligned_cols=68 Identities=13% Similarity=0.057 Sum_probs=46.9
Q ss_pred CCEEEEEcCCHHHHHHHHHHHHHHhhcccccCCCCceEEEEEcCcchHHHHHHHh-cCCcEEEeChHHHHHHHHcccCCC
Q 007814 219 GPFCLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVK-RGVHIVVATPGRLKDMLAKKKMNL 297 (588)
Q Consensus 219 ~~~~Lil~Ptr~La~Q~~~~~~~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~-~~~~IvV~Tp~~L~~~l~~~~~~l 297 (588)
+.++||.||++.-|.++++.+.+. ++.+..++|.... .....+. ...+|+||| +.+. .++++
T Consensus 188 ~~~~lVF~~s~~~a~~l~~~L~~~----------g~~~~~lh~~~~~-~~~~~f~~g~~~vLVaT-----~v~~-~GiDi 250 (451)
T 2jlq_A 188 QGKTVWFVPSIKAGNDIANCLRKS----------GKRVIQLSRKTFD-TEYPKTKLTDWDFVVTT-----DISE-MGANF 250 (451)
T ss_dssp CSCEEEECSSHHHHHHHHHHHHTT----------TCCEEEECTTTHH-HHGGGGGSSCCSEEEEC-----GGGG-SSCCC
T ss_pred CCCEEEEcCCHHHHHHHHHHHHHc----------CCeEEECCHHHHH-HHHHhhccCCceEEEEC-----CHHH-hCcCC
Confidence 447999999999999888877654 6778888876542 2222333 357999999 5554 45666
Q ss_pred CCcceeE
Q 007814 298 DNCRYLT 304 (588)
Q Consensus 298 ~~~~~lV 304 (588)
.. .+||
T Consensus 251 p~-~~VI 256 (451)
T 2jlq_A 251 RA-GRVI 256 (451)
T ss_dssp CC-SEEE
T ss_pred CC-CEEE
Confidence 66 6555
No 293
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=60.87 E-value=4.3 Score=40.16 Aligned_cols=16 Identities=25% Similarity=0.208 Sum_probs=13.6
Q ss_pred CEEEEecCCchHhHHH
Q 007814 182 DMIGIAFTGSGKTLVF 197 (588)
Q Consensus 182 dvii~a~TGsGKTl~~ 197 (588)
.+++++|||||||...
T Consensus 7 ~i~i~GptGsGKTtla 22 (323)
T 3crm_A 7 AIFLMGPTAAGKTDLA 22 (323)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 5788999999999654
No 294
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=60.84 E-value=4.8 Score=36.33 Aligned_cols=19 Identities=32% Similarity=0.284 Sum_probs=15.6
Q ss_pred cCCCEEEEecCCchHhHHH
Q 007814 179 SGRDMIGIAFTGSGKTLVF 197 (588)
Q Consensus 179 ~g~dvii~a~TGsGKTl~~ 197 (588)
.|.-+.++||+|||||...
T Consensus 6 ~g~ii~l~Gp~GsGKSTl~ 24 (205)
T 3tr0_A 6 KANLFIISAPSGAGKTSLV 24 (205)
T ss_dssp CCCEEEEECCTTSCHHHHH
T ss_pred CCcEEEEECcCCCCHHHHH
Confidence 5667888999999999653
No 295
>3gk5_A Uncharacterized rhodanese-related protein TVG0868615; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.40A {Thermoplasma volcanium GSS1}
Probab=60.78 E-value=5.3 Score=32.23 Aligned_cols=37 Identities=22% Similarity=0.367 Sum_probs=32.7
Q ss_pred CCCCEEEEeCccccHHHHHHHHHHcCCcEEEEeCCCC
Q 007814 393 TPPPVLIFCENKADVDDIHEYLLLKGVEAVAVHGGKD 429 (588)
Q Consensus 393 ~~~~viIF~~s~~~~~~l~~~L~~~g~~~~~ihg~~~ 429 (588)
...++++||.+-..+...+..|...|+++..+.||+.
T Consensus 54 ~~~~ivvyC~~G~rs~~aa~~L~~~G~~v~~l~GG~~ 90 (108)
T 3gk5_A 54 RDKKYAVICAHGNRSAAAVEFLSQLGLNIVDVEGGIQ 90 (108)
T ss_dssp TTSCEEEECSSSHHHHHHHHHHHTTTCCEEEETTHHH
T ss_pred CCCeEEEEcCCCcHHHHHHHHHHHcCCCEEEEcCcHH
Confidence 3568999999999999999999999999999999854
No 296
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=60.64 E-value=5.2 Score=35.73 Aligned_cols=17 Identities=24% Similarity=0.460 Sum_probs=13.7
Q ss_pred CCEEEEecCCchHhHHH
Q 007814 181 RDMIGIAFTGSGKTLVF 197 (588)
Q Consensus 181 ~dvii~a~TGsGKTl~~ 197 (588)
+-+.+++|+|+|||...
T Consensus 2 ~ii~l~GpsGaGKsTl~ 18 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLL 18 (186)
T ss_dssp CCEEEESSSSSSHHHHH
T ss_pred CEEEEECCCCCCHHHHH
Confidence 45788999999999553
No 297
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=60.55 E-value=77 Score=30.55 Aligned_cols=20 Identities=20% Similarity=0.159 Sum_probs=15.0
Q ss_pred CCCEEEEecCCchHhHHHHH
Q 007814 180 GRDMIGIAFTGSGKTLVFVL 199 (588)
Q Consensus 180 g~dvii~a~TGsGKTl~~~l 199 (588)
++-+++++++|+|||.....
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~ 117 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGK 117 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHH
Confidence 45677789999999965433
No 298
>3g5j_A Putative ATP/GTP binding protein; N-terminal domain of ATP/GTP binding protein, PSI, MCSG, STR genomics, protein structure initiative; HET: PGE; 1.76A {Clostridium difficile}
Probab=60.43 E-value=9 Score=31.80 Aligned_cols=35 Identities=23% Similarity=0.442 Sum_probs=31.0
Q ss_pred CCEEEEe-CccccHHHHHHHHHHcCCcEEEEeCCCC
Q 007814 395 PPVLIFC-ENKADVDDIHEYLLLKGVEAVAVHGGKD 429 (588)
Q Consensus 395 ~~viIF~-~s~~~~~~l~~~L~~~g~~~~~ihg~~~ 429 (588)
.+++||| .+-..+...+..|...|+++..+.||+.
T Consensus 90 ~~ivvyC~~~G~rs~~a~~~L~~~G~~v~~l~GG~~ 125 (134)
T 3g5j_A 90 DNIVIYCARGGMRSGSIVNLLSSLGVNVYQLEGGYK 125 (134)
T ss_dssp SEEEEECSSSSHHHHHHHHHHHHTTCCCEEETTHHH
T ss_pred CeEEEEECCCChHHHHHHHHHHHcCCceEEEeCcHH
Confidence 6899999 5777888999999999999999999865
No 299
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=60.31 E-value=23 Score=35.31 Aligned_cols=70 Identities=16% Similarity=0.248 Sum_probs=51.4
Q ss_pred CCCCEEEEeCccccHHHHHHHHHHc----CCcEEEEeCCCCHHHHHHHHHHHhcCCcEEEEEcCcc------ccCCCCCC
Q 007814 393 TPPPVLIFCENKADVDDIHEYLLLK----GVEAVAVHGGKDQEEREYAISSFKAGKKDVLVATDVA------SKGLDFPD 462 (588)
Q Consensus 393 ~~~~viIF~~s~~~~~~l~~~L~~~----g~~~~~ihg~~~~~~R~~~~~~f~~g~~~vLVaT~~~------~~GlDip~ 462 (588)
.++++||.|+++.-+..+++.+... ++.+..++|+.+..+....+. ..+|+|+|.-. ...+++..
T Consensus 88 ~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-----~~~i~v~T~~~l~~~~~~~~~~~~~ 162 (394)
T 1fuu_A 88 KAPQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEGLR-----DAQIVVGTPGRVFDNIQRRRFRTDK 162 (394)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECSSCCHHHHHHHHH-----HCSEEEECHHHHHHHHHTTSSCCTT
T ss_pred CCCCEEEEcCCHHHHHHHHHHHHHHhccCCeeEEEEeCCCchHHHHhhcC-----CCCEEEECHHHHHHHHHhCCcchhh
Confidence 3568999999999999888887653 688999999998766554443 46799999421 23455667
Q ss_pred cceEE
Q 007814 463 IQHVI 467 (588)
Q Consensus 463 v~~VI 467 (588)
+++||
T Consensus 163 ~~~vI 167 (394)
T 1fuu_A 163 IKMFI 167 (394)
T ss_dssp CCEEE
T ss_pred CcEEE
Confidence 77776
No 300
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=60.27 E-value=4.6 Score=40.41 Aligned_cols=19 Identities=32% Similarity=0.522 Sum_probs=15.8
Q ss_pred CCCEEEEecCCchHhHHHH
Q 007814 180 GRDMIGIAFTGSGKTLVFV 198 (588)
Q Consensus 180 g~dvii~a~TGsGKTl~~~ 198 (588)
++.+++.||+|+|||.+..
T Consensus 70 ~~~vLl~GppGtGKT~la~ 88 (368)
T 3uk6_A 70 GRAVLIAGQPGTGKTAIAM 88 (368)
T ss_dssp TCEEEEEESTTSSHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHH
Confidence 4689999999999996643
No 301
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=59.96 E-value=5.6 Score=36.70 Aligned_cols=20 Identities=15% Similarity=0.089 Sum_probs=16.4
Q ss_pred hcCCCEEEEecCCchHhHHH
Q 007814 178 LSGRDMIGIAFTGSGKTLVF 197 (588)
Q Consensus 178 l~g~dvii~a~TGsGKTl~~ 197 (588)
..|+-+.+++|+|+|||...
T Consensus 21 ~~G~~~~lvGpsGsGKSTLl 40 (218)
T 1z6g_A 21 NNIYPLVICGPSGVGKGTLI 40 (218)
T ss_dssp -CCCCEEEECSTTSSHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHH
Confidence 36888999999999999553
No 302
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A
Probab=59.94 E-value=19 Score=39.01 Aligned_cols=68 Identities=13% Similarity=0.104 Sum_probs=47.7
Q ss_pred CCEEEEEcCCHHHHHHHHHHHHHHhhcccccCCCCceEEEEEcCcchHHHHHHHh-cCCcEEEeChHHHHHHHHcccCCC
Q 007814 219 GPFCLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVK-RGVHIVVATPGRLKDMLAKKKMNL 297 (588)
Q Consensus 219 ~~~~Lil~Ptr~La~Q~~~~~~~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~-~~~~IvV~Tp~~L~~~l~~~~~~l 297 (588)
+.++||.|+|+.-|..+++.+.+. ++++..++|.. .......+. ...+|+||| +.+. ..+++
T Consensus 355 ~~~~LVF~~s~~~a~~l~~~L~~~----------g~~v~~lhg~~-R~~~l~~F~~g~~~VLVaT-----dv~~-rGiDi 417 (618)
T 2whx_A 355 QGKTVWFVPSIKAGNDIANCLRKS----------GKRVIQLSRKT-FDTEYPKTKLTDWDFVVTT-----DISE-MGANF 417 (618)
T ss_dssp CSCEEEECSSHHHHHHHHHHHHHT----------TCCEEEECTTT-HHHHTTHHHHSCCSEEEEC-----GGGG-TTCCC
T ss_pred CCCEEEEECChhHHHHHHHHHHHc----------CCcEEEEChHH-HHHHHHhhcCCCcEEEEEC-----cHHH-cCccc
Confidence 457999999999999988888775 67788888752 222333333 457899999 5554 35556
Q ss_pred CCcceeE
Q 007814 298 DNCRYLT 304 (588)
Q Consensus 298 ~~~~~lV 304 (588)
. +++||
T Consensus 418 ~-v~~VI 423 (618)
T 2whx_A 418 R-AGRVI 423 (618)
T ss_dssp C-CSEEE
T ss_pred C-ceEEE
Confidence 4 66664
No 303
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=59.92 E-value=4.5 Score=39.11 Aligned_cols=19 Identities=26% Similarity=0.457 Sum_probs=16.1
Q ss_pred cCCCEEEEecCCchHhHHH
Q 007814 179 SGRDMIGIAFTGSGKTLVF 197 (588)
Q Consensus 179 ~g~dvii~a~TGsGKTl~~ 197 (588)
.++.+++.||+|+|||..+
T Consensus 53 ~~~~vll~Gp~GtGKT~la 71 (297)
T 3b9p_A 53 PAKGLLLFGPPGNGKTLLA 71 (297)
T ss_dssp CCSEEEEESSSSSCHHHHH
T ss_pred CCCeEEEECcCCCCHHHHH
Confidence 3578999999999999654
No 304
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=59.81 E-value=43 Score=32.54 Aligned_cols=19 Identities=21% Similarity=0.281 Sum_probs=14.6
Q ss_pred cCCCEEEEecCCchHhHHH
Q 007814 179 SGRDMIGIAFTGSGKTLVF 197 (588)
Q Consensus 179 ~g~dvii~a~TGsGKTl~~ 197 (588)
.++-+++++++|+|||...
T Consensus 103 ~~~vi~ivG~~GsGKTTl~ 121 (306)
T 1vma_A 103 PPFVIMVVGVNGTGKTTSC 121 (306)
T ss_dssp SCEEEEEECCTTSSHHHHH
T ss_pred CCeEEEEEcCCCChHHHHH
Confidence 3455778899999999554
No 305
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=59.60 E-value=3 Score=43.12 Aligned_cols=55 Identities=18% Similarity=0.244 Sum_probs=32.3
Q ss_pred CCCCCCCCCCCCHHHHHHHHHC-C--CCCCcHHHHHHHHHHhcCCCEEEEecCCchHhHHH
Q 007814 140 PPIKNFKDMRFPEPILKKLKAK-G--IVQPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVF 197 (588)
Q Consensus 140 ~p~~~f~~~~l~~~l~~~l~~~-g--~~~p~~~Q~~~i~~il~g~dvii~a~TGsGKTl~~ 197 (588)
.|-.+|++.+=-....+.|.+. - +..|.-++.-. +--.+.+++.||+|+|||+.+
T Consensus 175 ~p~v~~~digGl~~~k~~l~e~v~~pl~~p~~f~~~g---~~~prGvLL~GPPGtGKTllA 232 (437)
T 4b4t_L 175 QGEITFDGIGGLTEQIRELREVIELPLKNPEIFQRVG---IKPPKGVLLYGPPGTGKTLLA 232 (437)
T ss_dssp SCSSCSGGGCSCHHHHHHHHHHHHHHHHCHHHHHHHC---CCCCCEEEEESCTTSSHHHHH
T ss_pred CCCCChhHhCChHHHHHHHHHHHHHHHhCHHHHHhCC---CCCCCeEEEECCCCCcHHHHH
Confidence 3456788887556666666543 1 11222121111 113478999999999999664
No 306
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=59.45 E-value=1.9 Score=41.68 Aligned_cols=54 Identities=22% Similarity=0.322 Sum_probs=27.0
Q ss_pred CCCCCCCCCCCHHHHHHHHHCCCCCCcHHH-HHHHHHHh--cCCCEEEEecCCchHhHHH
Q 007814 141 PIKNFKDMRFPEPILKKLKAKGIVQPTPIQ-VQGLPVVL--SGRDMIGIAFTGSGKTLVF 197 (588)
Q Consensus 141 p~~~f~~~~l~~~l~~~l~~~g~~~p~~~Q-~~~i~~il--~g~dvii~a~TGsGKTl~~ 197 (588)
|-.+|++.+-...+.+.|.+. +. .|+. ..++..+- -.+.+++.+|.|+|||..+
T Consensus 5 ~~~~~~di~g~~~~~~~l~~~-i~--~~~~~~~~l~~~~l~~~~GvlL~Gp~GtGKTtLa 61 (274)
T 2x8a_A 5 PNVTWADIGALEDIREELTMA-IL--APVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLA 61 (274)
T ss_dssp -------CCHHHHHHHHHHHH-HT--HHHHSHHHHHHTTCCCCSEEEEESSTTSCHHHHH
T ss_pred CCCCHHHhCCHHHHHHHHHHH-HH--HHhhCHHHHHHcCCCCCCeEEEECCCCCcHHHHH
Confidence 445788888777777777653 11 1221 11222211 2244999999999999553
No 307
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=59.33 E-value=14 Score=41.43 Aligned_cols=70 Identities=13% Similarity=0.173 Sum_probs=47.6
Q ss_pred CCCEEEEeCccccHHHHHHHHHHc----CCcEEEEeCCCCHHHHHHHHHHHhcCCcEEEEEcCc-----cccC-C-CCCC
Q 007814 394 PPPVLIFCENKADVDDIHEYLLLK----GVEAVAVHGGKDQEEREYAISSFKAGKKDVLVATDV-----ASKG-L-DFPD 462 (588)
Q Consensus 394 ~~~viIF~~s~~~~~~l~~~L~~~----g~~~~~ihg~~~~~~R~~~~~~f~~g~~~vLVaT~~-----~~~G-l-Dip~ 462 (588)
++++||.|+++.-+....+.+... ++.+..+||+.+...+...+. +..+|+|+|.- +..+ + .+.+
T Consensus 296 ~~~~Lvl~Pt~~L~~Q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~----~~~~Ivv~Tp~~l~~~l~~~~~~~~~~ 371 (797)
T 4a2q_A 296 KAKVVFLATKVPVYEQQKNVFKHHFERQGYSVQGISGENFSNVSVEKVI----EDSDIIVVTPQILVNSFEDGTLTSLSI 371 (797)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHHGGGTCCEEEECCC-----CHHHHH----HTCSEEEECHHHHHHHHHSSSCCCGGG
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHhcccCCceEEEEeCCcchhhhHHHhh----CCCCEEEEchHHHHHHHHhcccccccc
Confidence 678999999999888888877665 899999999987655433221 35789999952 1222 3 5667
Q ss_pred cceEE
Q 007814 463 IQHVI 467 (588)
Q Consensus 463 v~~VI 467 (588)
+++||
T Consensus 372 ~~~iV 376 (797)
T 4a2q_A 372 FTLMI 376 (797)
T ss_dssp CSEEE
T ss_pred CCEEE
Confidence 78777
No 308
>3nwn_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics, structural consortium, SGC, contractIle protein; HET: ADP; 2.00A {Homo sapiens}
Probab=59.18 E-value=6.4 Score=39.51 Aligned_cols=24 Identities=29% Similarity=0.315 Sum_probs=17.9
Q ss_pred HHHHHhcCCCEE--EEecCCchHhHH
Q 007814 173 GLPVVLSGRDMI--GIAFTGSGKTLV 196 (588)
Q Consensus 173 ~i~~il~g~dvi--i~a~TGsGKTl~ 196 (588)
.+..++.|-|+. .-+.||||||..
T Consensus 96 lv~~~l~G~N~tifAYGQTGSGKTyT 121 (359)
T 3nwn_A 96 VVSQALDGYNGTIMCYGQTGAGKTYT 121 (359)
T ss_dssp HHHHHHTTCCEEEEEEESTTSSHHHH
T ss_pred HHHHHhCCCCEEEEEeCCCCCCccEE
Confidence 456677888754 448999999965
No 309
>1u6p_A GAG polyprotein; MLV, A-minor K-turn, stem loop, bulge, G-U mismatch, G-A MIS U mismatch, A-C mismatch, zinc finger, NC, viral protein-RN; HET: AP7; NMR {Moloney murine leukemia virus} SCOP: g.40.1.1 PDB: 1wwd_A 1wwe_A 1wwf_A 1wwg_A
Probab=59.16 E-value=3.4 Score=29.17 Aligned_cols=22 Identities=45% Similarity=0.978 Sum_probs=18.9
Q ss_pred CCCCccCCCCCcccccCcchHH
Q 007814 544 VKGCAYCGGLGHRIRDCPKLEH 565 (588)
Q Consensus 544 ~~~c~~cg~~g~~~~~~~~~~~ 565 (588)
.-.|.+||..||...+||+-..
T Consensus 23 ~~~C~~Cge~GH~ardCp~~~~ 44 (56)
T 1u6p_A 23 RDQCAYCKEKGHWAKDCPKKPR 44 (56)
T ss_dssp TTBCSSSCCBSSCGGGCTTCCC
T ss_pred CCcceeCCCCCcccccCcCCcc
Confidence 3579999999999999998643
No 310
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=58.87 E-value=4.3 Score=41.09 Aligned_cols=19 Identities=26% Similarity=0.156 Sum_probs=15.9
Q ss_pred hcCCCEEEEecCCchHhHH
Q 007814 178 LSGRDMIGIAFTGSGKTLV 196 (588)
Q Consensus 178 l~g~dvii~a~TGsGKTl~ 196 (588)
..|..+++++|||||||..
T Consensus 134 ~~g~~i~ivG~~GsGKTTl 152 (372)
T 2ewv_A 134 RKMGLILVTGPTGSGKSTT 152 (372)
T ss_dssp SSSEEEEEECSSSSSHHHH
T ss_pred cCCCEEEEECCCCCCHHHH
Confidence 3677889999999999954
No 311
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=58.83 E-value=4.9 Score=37.99 Aligned_cols=18 Identities=28% Similarity=0.480 Sum_probs=15.1
Q ss_pred CCCEEEEecCCchHhHHH
Q 007814 180 GRDMIGIAFTGSGKTLVF 197 (588)
Q Consensus 180 g~dvii~a~TGsGKTl~~ 197 (588)
.+.+++.+|+|+|||...
T Consensus 45 ~~~vll~G~~GtGKT~la 62 (257)
T 1lv7_A 45 PKGVLMVGPPGTGKTLLA 62 (257)
T ss_dssp CCEEEEECCTTSCHHHHH
T ss_pred CCeEEEECcCCCCHHHHH
Confidence 457999999999999654
No 312
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=58.69 E-value=2 Score=44.99 Aligned_cols=70 Identities=14% Similarity=0.241 Sum_probs=0.0
Q ss_pred CCEEEEEcCCHHHHHHHHHHHHHHhhcccccCCCCceEEEEEcCcchHHHHHHH---h-cCCcEEEeChHHHHHHHHccc
Q 007814 219 GPFCLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVV---K-RGVHIVVATPGRLKDMLAKKK 294 (588)
Q Consensus 219 ~~~~Lil~Ptr~La~Q~~~~~~~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l---~-~~~~IvV~Tp~~L~~~l~~~~ 294 (588)
+.++||.||++.-|..+++.+... ++.+..++|+.+...+...+ . ...+|+||| +++. .+
T Consensus 333 ~~~~lvF~~s~~~~~~l~~~L~~~----------~~~v~~lh~~~~~~~R~~~~~~f~~g~~~iLv~T-----~~~~-~G 396 (479)
T 3fmp_B 333 IAQAMIFCHTRKTASWLAAELSKE----------GHQVALLSGEMMVEQRAAVIERFREGKEKVLVTT-----NVCA-RG 396 (479)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCceEEEeCcHHHHHHHHHHHHhC----------CccEEEecCCCCHHHHHHHHHHHHcCCCcEEEEc-----cccc-cC
Confidence 457899999999998888877765 56788889887665544333 2 247899999 4543 45
Q ss_pred CCCCCcceeE
Q 007814 295 MNLDNCRYLT 304 (588)
Q Consensus 295 ~~l~~~~~lV 304 (588)
+++..+++||
T Consensus 397 lDip~v~~VI 406 (479)
T 3fmp_B 397 IDVEQVSVVI 406 (479)
T ss_dssp ----------
T ss_pred CccccCCEEE
Confidence 6677777776
No 313
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=58.64 E-value=5 Score=39.99 Aligned_cols=16 Identities=31% Similarity=0.223 Sum_probs=13.3
Q ss_pred CEEEEecCCchHhHHH
Q 007814 182 DMIGIAFTGSGKTLVF 197 (588)
Q Consensus 182 dvii~a~TGsGKTl~~ 197 (588)
-++++||||||||...
T Consensus 9 lI~I~GptgSGKTtla 24 (340)
T 3d3q_A 9 LIVIVGPTASGKTELS 24 (340)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred eEEEECCCcCcHHHHH
Confidence 4678899999999654
No 314
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=58.63 E-value=9.3 Score=40.30 Aligned_cols=70 Identities=13% Similarity=0.212 Sum_probs=49.8
Q ss_pred CCCEEEEeCccccHHHHHHHHHHc----CCcEEEEeCCCCHHHHHHHHHHHhcCCcEEEEEcCc-----cccC-C-CCCC
Q 007814 394 PPPVLIFCENKADVDDIHEYLLLK----GVEAVAVHGGKDQEEREYAISSFKAGKKDVLVATDV-----ASKG-L-DFPD 462 (588)
Q Consensus 394 ~~~viIF~~s~~~~~~l~~~L~~~----g~~~~~ihg~~~~~~R~~~~~~f~~g~~~vLVaT~~-----~~~G-l-Dip~ 462 (588)
+.++||+|+++.-+..+++.+... ++.+..+||+.+...+...+. +..+|+|+|.- +..+ + ++.+
T Consensus 52 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~----~~~~i~v~T~~~l~~~~~~~~~~~~~~ 127 (555)
T 3tbk_A 52 KGKVVFFANQIPVYEQQATVFSRYFERLGYNIASISGATSDSVSVQHII----EDNDIIILTPQILVNNLNNGAIPSLSV 127 (555)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHHHTTTCCEEEECTTTGGGSCHHHHH----HHCSEEEECHHHHHHHHHTSSSCCGGG
T ss_pred CCEEEEEeCCHHHHHHHHHHHHHHhccCCcEEEEEcCCCcchhhHHHHh----cCCCEEEECHHHHHHHHhcCccccccc
Confidence 678999999999888888777665 899999999986554432221 24679999953 2222 3 5666
Q ss_pred cceEE
Q 007814 463 IQHVI 467 (588)
Q Consensus 463 v~~VI 467 (588)
+++||
T Consensus 128 ~~~vV 132 (555)
T 3tbk_A 128 FTLMI 132 (555)
T ss_dssp CSEEE
T ss_pred CCEEE
Confidence 77777
No 315
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=58.55 E-value=4.2 Score=35.41 Aligned_cols=16 Identities=19% Similarity=-0.216 Sum_probs=13.4
Q ss_pred CEEEEecCCchHhHHH
Q 007814 182 DMIGIAFTGSGKTLVF 197 (588)
Q Consensus 182 dvii~a~TGsGKTl~~ 197 (588)
-+++.|+.|||||.+.
T Consensus 3 ~i~l~G~~GsGKsT~~ 18 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVA 18 (173)
T ss_dssp EEEEECSSSSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4688999999999664
No 316
>3eme_A Rhodanese-like domain protein; alpha-beta-alpha sandwich, structural genomics; 2.00A {Staphylococcus aureus subsp} PDB: 3iwh_A 3mzz_A
Probab=58.48 E-value=5.3 Score=31.77 Aligned_cols=36 Identities=31% Similarity=0.517 Sum_probs=31.9
Q ss_pred CCCCEEEEeCccccHHHHHHHHHHcCCcEEEEeCCC
Q 007814 393 TPPPVLIFCENKADVDDIHEYLLLKGVEAVAVHGGK 428 (588)
Q Consensus 393 ~~~~viIF~~s~~~~~~l~~~L~~~g~~~~~ihg~~ 428 (588)
...++++||.+-..+...+..|...|+++..+.||+
T Consensus 55 ~~~~iv~yC~~g~rs~~a~~~L~~~G~~v~~l~GG~ 90 (103)
T 3eme_A 55 KNEIYYIVCAGGVRSAKVVEYLEANGIDAVNVEGGM 90 (103)
T ss_dssp TTSEEEEECSSSSHHHHHHHHHHTTTCEEEEETTHH
T ss_pred CCCeEEEECCCChHHHHHHHHHHHCCCCeEEeCCCH
Confidence 346899999999999999999999999988888874
No 317
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=58.35 E-value=10 Score=40.01 Aligned_cols=20 Identities=20% Similarity=0.190 Sum_probs=16.6
Q ss_pred cCCCEEEEecCCchHhHHHH
Q 007814 179 SGRDMIGIAFTGSGKTLVFV 198 (588)
Q Consensus 179 ~g~dvii~a~TGsGKTl~~~ 198 (588)
.+.++++.+.||||||.+.-
T Consensus 166 ~~pHlLIaG~TGSGKSt~L~ 185 (512)
T 2ius_A 166 KMPHLLVAGTTGSGASVGVN 185 (512)
T ss_dssp GSCSEEEECCTTSSHHHHHH
T ss_pred cCceEEEECCCCCCHHHHHH
Confidence 46799999999999996543
No 318
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=57.74 E-value=5.3 Score=40.74 Aligned_cols=15 Identities=27% Similarity=0.344 Sum_probs=12.7
Q ss_pred EEEEecCCchHhHHH
Q 007814 183 MIGIAFTGSGKTLVF 197 (588)
Q Consensus 183 vii~a~TGsGKTl~~ 197 (588)
++++||||||||..+
T Consensus 5 i~i~GptgsGKttla 19 (409)
T 3eph_A 5 IVIAGTTGVGKSQLS 19 (409)
T ss_dssp EEEEECSSSSHHHHH
T ss_pred EEEECcchhhHHHHH
Confidence 678899999999654
No 319
>3iwh_A Rhodanese-like domain protein; alpha-beta-alpha sandwich, structural genomics, C structural genomics of infectious diseases, csgid; 2.00A {Staphylococcus aureus subsp} PDB: 3mzz_A
Probab=57.50 E-value=5.7 Score=31.87 Aligned_cols=36 Identities=31% Similarity=0.517 Sum_probs=31.6
Q ss_pred CCCCEEEEeCccccHHHHHHHHHHcCCcEEEEeCCC
Q 007814 393 TPPPVLIFCENKADVDDIHEYLLLKGVEAVAVHGGK 428 (588)
Q Consensus 393 ~~~~viIF~~s~~~~~~l~~~L~~~g~~~~~ihg~~ 428 (588)
...++++||.+-..+...+..|...|+++..+.||+
T Consensus 55 ~~~~ivv~C~~G~rS~~aa~~L~~~G~~~~~l~GG~ 90 (103)
T 3iwh_A 55 KNEIYYIVCAGGVRSAKVVEYLEANGIDAVNVEGGM 90 (103)
T ss_dssp TTSEEEEECSSSSHHHHHHHHHHTTTCEEEEETTHH
T ss_pred CCCeEEEECCCCHHHHHHHHHHHHcCCCEEEecChH
Confidence 346899999999999999999999999998888875
No 320
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=57.40 E-value=4.5 Score=35.53 Aligned_cols=16 Identities=31% Similarity=0.378 Sum_probs=13.2
Q ss_pred CEEEEecCCchHhHHH
Q 007814 182 DMIGIAFTGSGKTLVF 197 (588)
Q Consensus 182 dvii~a~TGsGKTl~~ 197 (588)
-++++|++|||||...
T Consensus 4 ~I~i~G~~GsGKST~a 19 (181)
T 1ly1_A 4 IILTIGCPGSGKSTWA 19 (181)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEecCCCCCHHHHH
Confidence 3678899999999654
No 321
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=57.33 E-value=5 Score=41.29 Aligned_cols=55 Identities=22% Similarity=0.391 Sum_probs=33.0
Q ss_pred CCCCCCCCCCCCHHHHHHHHHC---CCCCCcHHHHHHHHHHhcCCCEEEEecCCchHhHHH
Q 007814 140 PPIKNFKDMRFPEPILKKLKAK---GIVQPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVF 197 (588)
Q Consensus 140 ~p~~~f~~~~l~~~l~~~l~~~---g~~~p~~~Q~~~i~~il~g~dvii~a~TGsGKTl~~ 197 (588)
.|-.+|++.+=-..+.+.|.+. -+..|--++...+ --.+.+++.+|.|+|||+.+
T Consensus 176 ~p~v~~~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi---~~prGvLLyGPPGTGKTlLA 233 (437)
T 4b4t_I 176 SPTESYSDIGGLESQIQEIKESVELPLTHPELYEEMGI---KPPKGVILYGAPGTGKTLLA 233 (437)
T ss_dssp SCCCCGGGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTC---CCCSEEEEESSTTTTHHHHH
T ss_pred CCCCcceecCcHHHHHHHHHHHHHHHHhCHHHHHhCCC---CCCCCCceECCCCchHHHHH
Confidence 3556888887555555555443 1223333332221 13478999999999999664
No 322
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=57.31 E-value=4 Score=36.01 Aligned_cols=20 Identities=25% Similarity=0.169 Sum_probs=15.8
Q ss_pred cCCCEEEEecCCchHhHHHH
Q 007814 179 SGRDMIGIAFTGSGKTLVFV 198 (588)
Q Consensus 179 ~g~dvii~a~TGsGKTl~~~ 198 (588)
.|.=+.+++|+|||||..+-
T Consensus 8 ~gei~~l~G~nGsGKSTl~~ 27 (171)
T 4gp7_A 8 ELSLVVLIGSSGSGKSTFAK 27 (171)
T ss_dssp SSEEEEEECCTTSCHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHH
Confidence 45667889999999996644
No 323
>3foj_A Uncharacterized protein; protein SSP1007, structural genomics, PSI-2, protein structure initiative; 1.60A {Staphylococcus saprophyticus subsp}
Probab=57.24 E-value=5.5 Score=31.53 Aligned_cols=37 Identities=32% Similarity=0.554 Sum_probs=32.2
Q ss_pred CCCCEEEEeCccccHHHHHHHHHHcCCcEEEEeCCCC
Q 007814 393 TPPPVLIFCENKADVDDIHEYLLLKGVEAVAVHGGKD 429 (588)
Q Consensus 393 ~~~~viIF~~s~~~~~~l~~~L~~~g~~~~~ihg~~~ 429 (588)
...++++||.+-..+...+..|...|+++..+.||+.
T Consensus 55 ~~~~ivvyC~~g~rs~~a~~~L~~~G~~v~~l~GG~~ 91 (100)
T 3foj_A 55 DNETYYIICKAGGRSAQVVQYLEQNGVNAVNVEGGMD 91 (100)
T ss_dssp TTSEEEEECSSSHHHHHHHHHHHTTTCEEEEETTHHH
T ss_pred CCCcEEEEcCCCchHHHHHHHHHHCCCCEEEecccHH
Confidence 3468999999999999999999999998888888753
No 324
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=57.08 E-value=4.1 Score=35.86 Aligned_cols=19 Identities=26% Similarity=0.335 Sum_probs=15.3
Q ss_pred cCCCEEEEecCCchHhHHH
Q 007814 179 SGRDMIGIAFTGSGKTLVF 197 (588)
Q Consensus 179 ~g~dvii~a~TGsGKTl~~ 197 (588)
.|.-++++++.|||||...
T Consensus 7 ~g~~i~l~G~~GsGKSTl~ 25 (175)
T 1knq_A 7 DHHIYVLMGVSGSGKSAVA 25 (175)
T ss_dssp TSEEEEEECSTTSCHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHH
Confidence 3556889999999999654
No 325
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=56.83 E-value=13 Score=34.02 Aligned_cols=45 Identities=20% Similarity=0.231 Sum_probs=28.9
Q ss_pred CHHHHHHHHHCCCCCCcHHHHHHHHHHhcC----CCEEEEecCCchHhHHH
Q 007814 151 PEPILKKLKAKGIVQPTPIQVQGLPVVLSG----RDMIGIAFTGSGKTLVF 197 (588)
Q Consensus 151 ~~~l~~~l~~~g~~~p~~~Q~~~i~~il~g----~dvii~a~TGsGKTl~~ 197 (588)
...+.+.|+=.|+ .+... ...+..++.+ +.+++.+|.|+|||..+
T Consensus 27 w~~I~~~l~yq~~-~~~~f-~~~l~~~~~~iPkkn~ili~GPPGtGKTt~a 75 (212)
T 1tue_A 27 WRPIVQFLRYQQI-EFITF-LGALKSFLKGTPKKNCLVFCGPANTGKSYFG 75 (212)
T ss_dssp SHHHHHHHHHTTC-CHHHH-HHHHHHHHHTCTTCSEEEEESCGGGCHHHHH
T ss_pred HHHHHHHHHHcCc-CHHHH-HHHHHHHHhcCCcccEEEEECCCCCCHHHHH
Confidence 3567777775553 34444 4445555544 35888999999999554
No 326
>1a6b_B Momulv, zinc finger protein NCP10; nucleocapsid protein, intercalation, nucleic acid, retrovirus, viral protein/DNA complex; HET: DNA; NMR {Synthetic} SCOP: g.40.1.1
Probab=56.82 E-value=5 Score=26.14 Aligned_cols=22 Identities=45% Similarity=0.978 Sum_probs=19.2
Q ss_pred CCCCccCCCCCcccccCcchHH
Q 007814 544 VKGCAYCGGLGHRIRDCPKLEH 565 (588)
Q Consensus 544 ~~~c~~cg~~g~~~~~~~~~~~ 565 (588)
...|.+||-.||...+||+-..
T Consensus 10 ~~~C~~Cgk~GH~ardCP~~~~ 31 (40)
T 1a6b_B 10 RDQCAYCKEKGHWAKDCPKKPR 31 (40)
T ss_dssp SSSCSSSCCTTCCTTSCSSSCC
T ss_pred CCeeeECCCCCcchhhCcCCcc
Confidence 4689999999999999998643
No 327
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=56.82 E-value=6.2 Score=35.67 Aligned_cols=19 Identities=32% Similarity=0.545 Sum_probs=15.9
Q ss_pred cCCCEEEEecCCchHhHHH
Q 007814 179 SGRDMIGIAFTGSGKTLVF 197 (588)
Q Consensus 179 ~g~dvii~a~TGsGKTl~~ 197 (588)
.|.-++++++.|||||...
T Consensus 28 ~g~~i~l~G~~GsGKSTl~ 46 (200)
T 4eun_A 28 PTRHVVVMGVSGSGKTTIA 46 (200)
T ss_dssp CCCEEEEECCTTSCHHHHH
T ss_pred CCcEEEEECCCCCCHHHHH
Confidence 4678899999999999654
No 328
>1bg2_A Kinesin; motor protein, ATPase, microtubule associated; HET: ADP; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 2p4n_K* 1mkj_A* 2kin_A* 3kin_A*
Probab=56.61 E-value=7.4 Score=38.48 Aligned_cols=24 Identities=33% Similarity=0.267 Sum_probs=17.6
Q ss_pred HHHHHhcCCCE--EEEecCCchHhHH
Q 007814 173 GLPVVLSGRDM--IGIAFTGSGKTLV 196 (588)
Q Consensus 173 ~i~~il~g~dv--ii~a~TGsGKTl~ 196 (588)
.+..++.|.|+ +..+.||||||..
T Consensus 69 lv~~~l~G~n~tifAYGqTGSGKTyT 94 (325)
T 1bg2_A 69 IVKDVLEGYNGTIFAYGQTSSGKTHT 94 (325)
T ss_dssp HHHHHHTTCCEEEEEECSTTSSHHHH
T ss_pred hHHHHhCCCeEEEEEECCCCCCCceE
Confidence 34556788875 4458999999965
No 329
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=56.57 E-value=5.1 Score=41.60 Aligned_cols=54 Identities=20% Similarity=0.306 Sum_probs=33.6
Q ss_pred CCCCCCCCCCCHHHHHHHHHCC---CCCCcHHHHHHHHHHhcCCCEEEEecCCchHhHHH
Q 007814 141 PIKNFKDMRFPEPILKKLKAKG---IVQPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVF 197 (588)
Q Consensus 141 p~~~f~~~~l~~~l~~~l~~~g---~~~p~~~Q~~~i~~il~g~dvii~a~TGsGKTl~~ 197 (588)
|-.+|++.+=-..+.+.|.+.= +..|--++.-. +--.+.+++.+|+|+|||+.+
T Consensus 204 P~vt~~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~G---i~pprGILLyGPPGTGKTlLA 260 (467)
T 4b4t_H 204 PDVTYSDVGGCKDQIEKLREVVELPLLSPERFATLG---IDPPKGILLYGPPGTGKTLCA 260 (467)
T ss_dssp CSCCCSSCTTCHHHHHHHHHHTHHHHHCHHHHHHHT---CCCCSEEEECSCTTSSHHHHH
T ss_pred CCCCHHHhccHHHHHHHHHHHHHHHhcCHHHHHHCC---CCCCCceEeeCCCCCcHHHHH
Confidence 4568999887777777776541 11121111111 113578999999999999654
No 330
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=56.55 E-value=13 Score=39.28 Aligned_cols=70 Identities=13% Similarity=0.180 Sum_probs=47.7
Q ss_pred CCCEEEEeCccccHHHHHHHHHHc----CCcEEEEeCCCCHHHHHHHHHHHhcCCcEEEEEcCcc-----ccC-C-CCCC
Q 007814 394 PPPVLIFCENKADVDDIHEYLLLK----GVEAVAVHGGKDQEEREYAISSFKAGKKDVLVATDVA-----SKG-L-DFPD 462 (588)
Q Consensus 394 ~~~viIF~~s~~~~~~l~~~L~~~----g~~~~~ihg~~~~~~R~~~~~~f~~g~~~vLVaT~~~-----~~G-l-Dip~ 462 (588)
+.++||.|+++.-+..+++.+... ++.+..+||+.+...+...+. ...+|+|+|.-. ..+ + ++..
T Consensus 55 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~----~~~~i~v~T~~~l~~~~~~~~~~~~~~ 130 (556)
T 4a2p_A 55 KAKVVFLATKVPVYEQQKNVFKHHFERQGYSVQGISGENFSNVSVEKVI----EDSDIIVVTPQILVNSFEDGTLTSLSI 130 (556)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHHGGGTCCEEECCCC-----CHHHHH----HHCSEEEECHHHHHHHHHSSSCCCSTT
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHHhcccCceEEEEeCCCCcchhHHHhh----CCCCEEEECHHHHHHHHHhCccccccc
Confidence 678999999999888888887765 899999999987655432221 236799999532 222 4 6777
Q ss_pred cceEE
Q 007814 463 IQHVI 467 (588)
Q Consensus 463 v~~VI 467 (588)
+++||
T Consensus 131 ~~~vV 135 (556)
T 4a2p_A 131 FTLMI 135 (556)
T ss_dssp CSEEE
T ss_pred CCEEE
Confidence 88877
No 331
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=56.25 E-value=9.2 Score=37.21 Aligned_cols=68 Identities=12% Similarity=0.063 Sum_probs=48.6
Q ss_pred CCCEEEEeCccccHHHHHHHHHHc-----CCcEEEEeCCCCHHHHHHHHHHHhcCCcEEEEEcCcc------c-cCCCCC
Q 007814 394 PPPVLIFCENKADVDDIHEYLLLK-----GVEAVAVHGGKDQEEREYAISSFKAGKKDVLVATDVA------S-KGLDFP 461 (588)
Q Consensus 394 ~~~viIF~~s~~~~~~l~~~L~~~-----g~~~~~ihg~~~~~~R~~~~~~f~~g~~~vLVaT~~~------~-~GlDip 461 (588)
.+++||.++++.-+..+++.+... ++.+..++|+.+.... .....+|||+|.-. . ..+++.
T Consensus 162 ~~~~lil~PtreLa~Q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-------~~~~~~IlV~TP~~l~~~l~~~~~~~l~ 234 (300)
T 3fmo_B 162 YPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERG-------QKISEQIVIGTPGTVLDWCSKLKFIDPK 234 (300)
T ss_dssp SCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEESTTCCCCTT-------CCCCCSEEEECHHHHHHHHTTTCCCCGG
T ss_pred CceEEEEcCcHHHHHHHHHHHHHHHhhCCCcEEEEEeCCccHhhh-------hcCCCCEEEECHHHHHHHHHhcCCCChh
Confidence 447999999999999988887664 4677788887653221 13456899999632 1 357788
Q ss_pred CcceEEe
Q 007814 462 DIQHVIN 468 (588)
Q Consensus 462 ~v~~VI~ 468 (588)
++++||.
T Consensus 235 ~l~~lVl 241 (300)
T 3fmo_B 235 KIKVFVL 241 (300)
T ss_dssp GCSEEEE
T ss_pred hceEEEE
Confidence 8888773
No 332
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=56.12 E-value=6.5 Score=35.78 Aligned_cols=22 Identities=23% Similarity=0.217 Sum_probs=16.5
Q ss_pred HHhcCCCEEEEecCCchHhHHH
Q 007814 176 VVLSGRDMIGIAFTGSGKTLVF 197 (588)
Q Consensus 176 ~il~g~dvii~a~TGsGKTl~~ 197 (588)
.+..|.-+.+++|+|||||..+
T Consensus 16 ~i~~Gei~~l~GpnGsGKSTLl 37 (207)
T 1znw_A 16 PAAVGRVVVLSGPSAVGKSTVV 37 (207)
T ss_dssp ---CCCEEEEECSTTSSHHHHH
T ss_pred CCCCCCEEEEECCCCCCHHHHH
Confidence 4567888899999999999553
No 333
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=55.74 E-value=5.8 Score=39.13 Aligned_cols=50 Identities=22% Similarity=0.313 Sum_probs=29.5
Q ss_pred CCCCCCCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHh-----cCCCEEEEecCCchHhHHH
Q 007814 142 IKNFKDMRFPEPILKKLKAKGIVQPTPIQVQGLPVVL-----SGRDMIGIAFTGSGKTLVF 197 (588)
Q Consensus 142 ~~~f~~~~l~~~l~~~l~~~g~~~p~~~Q~~~i~~il-----~g~dvii~a~TGsGKTl~~ 197 (588)
-.+|+++.=...+.+.|.+.= . .|.+ .|.++ ..+.+++.+|+|+|||..+
T Consensus 8 ~~~~~di~G~~~~k~~l~~~v-~--~p~~---~~~~~~~~~~~~~~iLL~GppGtGKT~la 62 (322)
T 1xwi_A 8 NVKWSDVAGLEGAKEALKEAV-I--LPIK---FPHLFTGKRTPWRGILLFGPPGTGKSYLA 62 (322)
T ss_dssp CCCGGGSCSCHHHHHHHHHHH-H--HHHH---CGGGSCTTCCCCSEEEEESSSSSCHHHHH
T ss_pred CCCHHHhcCHHHHHHHHHHHH-H--HHHh---CHHHHhCCCCCCceEEEECCCCccHHHHH
Confidence 347888776666666665320 0 0100 01122 2368999999999999654
No 334
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=55.73 E-value=11 Score=37.80 Aligned_cols=39 Identities=26% Similarity=0.259 Sum_probs=25.8
Q ss_pred cCCCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEEEEEcCC
Q 007814 179 SGRDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFCLIVCPS 228 (588)
Q Consensus 179 ~g~dvii~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~Lil~Pt 228 (588)
.|+-+++.+++|+|||...+-.+.. +.. .+..++|+..-
T Consensus 62 ~G~ii~I~G~pGsGKTtLal~la~~-~~~----------~g~~vlyid~E 100 (356)
T 1u94_A 62 MGRIVEIYGPESSGKTTLTLQVIAA-AQR----------EGKTCAFIDAE 100 (356)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHH-HHH----------TTCCEEEEESS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH-HHH----------CCCeEEEEeCC
Confidence 5677899999999999665443333 222 24467777753
No 335
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=55.70 E-value=6 Score=38.95 Aligned_cols=51 Identities=20% Similarity=0.316 Sum_probs=30.6
Q ss_pred CCCCCCCCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHh-----cCCCEEEEecCCchHhHHH
Q 007814 141 PIKNFKDMRFPEPILKKLKAKGIVQPTPIQVQGLPVVL-----SGRDMIGIAFTGSGKTLVF 197 (588)
Q Consensus 141 p~~~f~~~~l~~~l~~~l~~~g~~~p~~~Q~~~i~~il-----~g~dvii~a~TGsGKTl~~ 197 (588)
|-.+|+++.-...+.+.|...= . .|. ..|.++ ..+.+++.+|+|+|||.++
T Consensus 13 ~~~~~~di~G~~~~~~~l~~~i-~--~~~---~~~~~~~~~~~~~~~vLl~GppGtGKT~la 68 (322)
T 3eie_A 13 PNVKWEDVAGLEGAKEALKEAV-I--LPV---KFPHLFKGNRKPTSGILLYGPPGTGKSYLA 68 (322)
T ss_dssp CCCCGGGSCSCHHHHHHHHHHT-H--HHH---HCGGGCCTTCCCCCEEEEECSSSSCHHHHH
T ss_pred CCCCHHHhcChHHHHHHHHHHH-H--HHH---hCHHHHhcCCCCCCeEEEECCCCCcHHHHH
Confidence 3346788776677777665431 0 011 011111 2357999999999999664
No 336
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=55.51 E-value=7.9 Score=33.31 Aligned_cols=15 Identities=33% Similarity=0.324 Sum_probs=12.5
Q ss_pred CEEEEecCCchHhHH
Q 007814 182 DMIGIAFTGSGKTLV 196 (588)
Q Consensus 182 dvii~a~TGsGKTl~ 196 (588)
-.++++|+|||||.+
T Consensus 25 ~~~I~G~NGsGKSti 39 (149)
T 1f2t_A 25 INLIIGQNGSGKSSL 39 (149)
T ss_dssp EEEEECCTTSSHHHH
T ss_pred eEEEECCCCCCHHHH
Confidence 357889999999965
No 337
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=55.30 E-value=12 Score=36.63 Aligned_cols=18 Identities=33% Similarity=0.580 Sum_probs=14.4
Q ss_pred CCCEEEEecCCchHhHHH
Q 007814 180 GRDMIGIAFTGSGKTLVF 197 (588)
Q Consensus 180 g~dvii~a~TGsGKTl~~ 197 (588)
|.-+.+++|+|||||...
T Consensus 102 g~vi~lvG~nGsGKTTll 119 (304)
T 1rj9_A 102 GRVVLVVGVNGVGKTTTI 119 (304)
T ss_dssp SSEEEEECSTTSSHHHHH
T ss_pred CeEEEEECCCCCcHHHHH
Confidence 556778899999999543
No 338
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=55.16 E-value=4.2 Score=41.96 Aligned_cols=54 Identities=19% Similarity=0.265 Sum_probs=31.2
Q ss_pred CCCCCCCCCCCHHHHHHHHHC---CCCCCcHHHHHHHHHHhcCCCEEEEecCCchHhHHH
Q 007814 141 PIKNFKDMRFPEPILKKLKAK---GIVQPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVF 197 (588)
Q Consensus 141 p~~~f~~~~l~~~l~~~l~~~---g~~~p~~~Q~~~i~~il~g~dvii~a~TGsGKTl~~ 197 (588)
|-.+|++.+=-..+.+.|.+. -+..|--++... +--.+.+++.||+|+|||+.+
T Consensus 167 p~v~~~digGl~~~k~~l~e~v~~pl~~p~~~~~~g---~~~prGiLL~GPPGtGKT~la 223 (428)
T 4b4t_K 167 PDVTYADVGGLDMQKQEIREAVELPLVQADLYEQIG---IDPPRGVLLYGPPGTGKTMLV 223 (428)
T ss_dssp CSCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHC---CCCCCEEEEESCTTTTHHHHH
T ss_pred CCCCHHHhccHHHHHHHHHHHHHHHHhCHHHHHhCC---CCCCceEEEECCCCCCHHHHH
Confidence 445788887555565555442 111222222111 113467999999999999664
No 339
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=55.00 E-value=6.1 Score=38.35 Aligned_cols=17 Identities=18% Similarity=-0.013 Sum_probs=14.2
Q ss_pred CCEEEEecCCchHhHHH
Q 007814 181 RDMIGIAFTGSGKTLVF 197 (588)
Q Consensus 181 ~dvii~a~TGsGKTl~~ 197 (588)
+.+++.+|+|+|||...
T Consensus 37 ~~lLl~GppGtGKT~la 53 (293)
T 3t15_A 37 LILGIWGGKGQGKSFQC 53 (293)
T ss_dssp SEEEEEECTTSCHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 56888899999999654
No 340
>2y65_A Kinesin, kinesin heavy chain; motor protein; HET: ADP; 2.20A {Drosophila melanogaster} PDB: 2y5w_A*
Probab=54.60 E-value=8.3 Score=38.81 Aligned_cols=24 Identities=33% Similarity=0.289 Sum_probs=17.3
Q ss_pred HHHHHhcCCCE--EEEecCCchHhHH
Q 007814 173 GLPVVLSGRDM--IGIAFTGSGKTLV 196 (588)
Q Consensus 173 ~i~~il~g~dv--ii~a~TGsGKTl~ 196 (588)
.+..++.|.|+ +..+.||||||..
T Consensus 76 lv~~~l~G~n~tifAYGqTGSGKTyT 101 (365)
T 2y65_A 76 IVTDVLAGYNGTIFAYGQTSSGKTHT 101 (365)
T ss_dssp HHHHHHTTCCEEEEEECSTTSSHHHH
T ss_pred HHHHHhCCCceEEEeecCCCCCCceE
Confidence 34456688875 4458999999965
No 341
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=54.50 E-value=14 Score=32.62 Aligned_cols=14 Identities=29% Similarity=0.387 Sum_probs=11.7
Q ss_pred EEEEecCCchHhHH
Q 007814 183 MIGIAFTGSGKTLV 196 (588)
Q Consensus 183 vii~a~TGsGKTl~ 196 (588)
+.++++.|||||..
T Consensus 7 i~i~G~sGsGKTTl 20 (169)
T 1xjc_A 7 WQVVGYKHSGKTTL 20 (169)
T ss_dssp EEEECCTTSSHHHH
T ss_pred EEEECCCCCCHHHH
Confidence 56789999999954
No 342
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=54.44 E-value=14 Score=47.76 Aligned_cols=48 Identities=15% Similarity=0.214 Sum_probs=33.6
Q ss_pred CCHHHHHHHHHCCCCCCcHHHHHHH----HHHhcCCCEEEEecCCchHhHHHH
Q 007814 150 FPEPILKKLKAKGIVQPTPIQVQGL----PVVLSGRDMIGIAFTGSGKTLVFV 198 (588)
Q Consensus 150 l~~~l~~~l~~~g~~~p~~~Q~~~i----~~il~g~dvii~a~TGsGKTl~~~ 198 (588)
|...+.+.+.+.|+ .|++.+..=+ ..+...+.++++||||||||.++-
T Consensus 873 l~~ai~~~~~~~~L-~~~~~~v~KviQLye~~~vRhGvmlVGp~gsGKTt~~~ 924 (3245)
T 3vkg_A 873 LRKKIQEIAKQRHL-VTKQEWVEKILQLHQILNINHGVMMVGPSGGGKTTSWE 924 (3245)
T ss_dssp HHHHHHHHHHHTTC-CCCHHHHHHHHHHHHHHTTCSEEEEECSSSSSHHHHHH
T ss_pred HHHHHHHHHHHcCC-ccCHHHHHHHHHHHHHHHheeeEEEECCCCCCHHHHHH
Confidence 45667777788887 4666554333 333466779999999999997764
No 343
>3b6u_A Kinesin-like protein KIF3B; structural genomics consortium, motor domain, ADP, SGC, ATP-binding, coiled coil, microtubule, motor protein; HET: ADP; 1.80A {Homo sapiens} PDB: 3b6v_A*
Probab=54.38 E-value=8.6 Score=38.76 Aligned_cols=24 Identities=33% Similarity=0.354 Sum_probs=17.3
Q ss_pred HHHHHhcCCCEE--EEecCCchHhHH
Q 007814 173 GLPVVLSGRDMI--GIAFTGSGKTLV 196 (588)
Q Consensus 173 ~i~~il~g~dvi--i~a~TGsGKTl~ 196 (588)
.+..++.|-|+. ..+.||||||..
T Consensus 93 lv~~~l~G~n~tifAYGqTGSGKTyT 118 (372)
T 3b6u_A 93 LVDSVLQGFNGTIFAYGQTGTGKTYT 118 (372)
T ss_dssp HHHHHHTTCCEEEEEEESTTSSHHHH
T ss_pred HHHHHhCCCeeeEEeecCCCCCCCEe
Confidence 344567888754 448999999955
No 344
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=54.31 E-value=7.1 Score=39.11 Aligned_cols=18 Identities=17% Similarity=0.274 Sum_probs=15.5
Q ss_pred CCCEEEEecCCchHhHHH
Q 007814 180 GRDMIGIAFTGSGKTLVF 197 (588)
Q Consensus 180 g~dvii~a~TGsGKTl~~ 197 (588)
.+.+++.+|+|+|||+.+
T Consensus 84 ~~~iLL~GppGtGKT~la 101 (355)
T 2qp9_X 84 TSGILLYGPPGTGKSYLA 101 (355)
T ss_dssp CCCEEEECSTTSCHHHHH
T ss_pred CceEEEECCCCCcHHHHH
Confidence 467999999999999664
No 345
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=54.25 E-value=9.1 Score=39.10 Aligned_cols=25 Identities=32% Similarity=0.433 Sum_probs=19.1
Q ss_pred HHHHHhcCCCEE--EEecCCchHhHHH
Q 007814 173 GLPVVLSGRDMI--GIAFTGSGKTLVF 197 (588)
Q Consensus 173 ~i~~il~g~dvi--i~a~TGsGKTl~~ 197 (588)
.+..++.|.|+. ..+.||||||...
T Consensus 132 lv~~~l~G~N~tifAYGqTGSGKTyTM 158 (403)
T 4etp_A 132 LVQSSLDGYNVAIFAYGQTGSGKTFTM 158 (403)
T ss_dssp HHHHHHTTCCEEEEEESCTTSSHHHHH
T ss_pred HHHHHhCCcceEEEEECCCCCCCceEe
Confidence 566778998764 4489999999663
No 346
>2nr8_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics, structural genomics consortium, SGC, contractIle protein; HET: ADP; 2.00A {Homo sapiens} PDB: 3nwn_A*
Probab=54.15 E-value=8.8 Score=38.50 Aligned_cols=24 Identities=29% Similarity=0.315 Sum_probs=17.7
Q ss_pred HHHHHhcCCCEE--EEecCCchHhHH
Q 007814 173 GLPVVLSGRDMI--GIAFTGSGKTLV 196 (588)
Q Consensus 173 ~i~~il~g~dvi--i~a~TGsGKTl~ 196 (588)
.+..++.|.|+. ..+.||||||..
T Consensus 95 lv~~~l~G~N~tIfAYGqTGSGKTyT 120 (358)
T 2nr8_A 95 VVSQALDGYNGTIMCYGQTGAGKTYT 120 (358)
T ss_dssp HHHHHHTTCCEEEEEEESTTSSHHHH
T ss_pred HHHHHhCCCceEEEEECCCCCCCceE
Confidence 455567888764 448999999965
No 347
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=54.01 E-value=5.3 Score=35.43 Aligned_cols=19 Identities=26% Similarity=0.319 Sum_probs=15.4
Q ss_pred cCCCEEEEecCCchHhHHH
Q 007814 179 SGRDMIGIAFTGSGKTLVF 197 (588)
Q Consensus 179 ~g~dvii~a~TGsGKTl~~ 197 (588)
.|..++++++.|||||...
T Consensus 3 ~g~~I~l~G~~GsGKST~~ 21 (186)
T 3cm0_A 3 VGQAVIFLGPPGAGKGTQA 21 (186)
T ss_dssp CEEEEEEECCTTSCHHHHH
T ss_pred CCeEEEEECCCCCCHHHHH
Confidence 3556889999999999664
No 348
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=53.99 E-value=7.3 Score=36.06 Aligned_cols=21 Identities=29% Similarity=0.343 Sum_probs=16.3
Q ss_pred HhcCCCEEEEecCCchHhHHH
Q 007814 177 VLSGRDMIGIAFTGSGKTLVF 197 (588)
Q Consensus 177 il~g~dvii~a~TGsGKTl~~ 197 (588)
+..|+-+++++|.|||||...
T Consensus 13 ~~~G~ii~l~GpsGsGKSTLl 33 (219)
T 1s96_A 13 MAQGTLYIVSAPSGAGKSSLI 33 (219)
T ss_dssp --CCCEEEEECCTTSCHHHHH
T ss_pred CCCCcEEEEECCCCCCHHHHH
Confidence 346788899999999999653
No 349
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=53.97 E-value=12 Score=34.77 Aligned_cols=21 Identities=24% Similarity=0.186 Sum_probs=16.0
Q ss_pred CEEEEecCCchHhHHHHHHHH
Q 007814 182 DMIGIAFTGSGKTLVFVLPMI 202 (588)
Q Consensus 182 dvii~a~TGsGKTl~~~lp~l 202 (588)
++++.++.|+|||.+.+--+.
T Consensus 8 ~I~~~~kgGvGKTt~a~~la~ 28 (228)
T 2r8r_A 8 KVFLGAAPGVGKTYAMLQAAH 28 (228)
T ss_dssp EEEEESSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHH
Confidence 588889999999977544433
No 350
>4a14_A Kinesin, kinesin-like protein KIF7; motor protein, motor domain; HET: ADP; 1.60A {Homo sapiens} SCOP: c.37.1.0 PDB: 2xt3_A*
Probab=53.71 E-value=8.6 Score=38.36 Aligned_cols=24 Identities=33% Similarity=0.400 Sum_probs=17.3
Q ss_pred HHHHHhcCCCE--EEEecCCchHhHH
Q 007814 173 GLPVVLSGRDM--IGIAFTGSGKTLV 196 (588)
Q Consensus 173 ~i~~il~g~dv--ii~a~TGsGKTl~ 196 (588)
.+..++.|.|+ +..+.||||||..
T Consensus 75 lv~~~l~G~n~tifAYGqTGSGKTyT 100 (344)
T 4a14_A 75 LLEAFFEGFNATVFAYGQTGSGKTYT 100 (344)
T ss_dssp HHHHHHTTCCEEEEEESSTTSSHHHH
T ss_pred HHHHHHhhcCeeEEEecccCCCceEe
Confidence 34456688875 4448999999965
No 351
>3dc4_A Kinesin-like protein NOD; catalytic domain, ATPase, microtubule, ADP, nucleotide-binding protein, ATP-binding, coiled coil, motor protein; HET: ADP; 1.90A {Drosophila melanogaster} PDB: 3dcb_A* 3dco_N* 3pxn_A*
Probab=53.61 E-value=7.8 Score=38.66 Aligned_cols=23 Identities=26% Similarity=0.439 Sum_probs=16.9
Q ss_pred HHHHhcCCCE--EEEecCCchHhHH
Q 007814 174 LPVVLSGRDM--IGIAFTGSGKTLV 196 (588)
Q Consensus 174 i~~il~g~dv--ii~a~TGsGKTl~ 196 (588)
+..++.|-|+ +..+.||||||..
T Consensus 87 v~~~l~G~N~tifAYGQTGSGKTyT 111 (344)
T 3dc4_A 87 VDKLLEGFQCTALAYGQTGTGKSYS 111 (344)
T ss_dssp HHHHHHTCCEEEEEESSTTSSHHHH
T ss_pred hhHhhCCCceEEEEecCCCCCCCeE
Confidence 4455678775 4458999999965
No 352
>2vvg_A Kinesin-2; motor protein, nucleotide-binding, microtubule, ATP-binding; HET: ADP; 1.60A {Giardia intestinalis}
Probab=53.54 E-value=8.8 Score=38.34 Aligned_cols=24 Identities=33% Similarity=0.397 Sum_probs=17.2
Q ss_pred HHHHHhcCCCEE--EEecCCchHhHH
Q 007814 173 GLPVVLSGRDMI--GIAFTGSGKTLV 196 (588)
Q Consensus 173 ~i~~il~g~dvi--i~a~TGsGKTl~ 196 (588)
.+..++.|-|+. ..+.||||||..
T Consensus 81 lv~~~l~G~n~tifAYGqTGSGKTyT 106 (350)
T 2vvg_A 81 LIDAVLEGFNSTIFAYGQTGAGKTWT 106 (350)
T ss_dssp HHHHHHTTCCEEEEEECSTTSSHHHH
T ss_pred HHHHHhCCCceeEEeecCCCCCCCEE
Confidence 344566887754 448999999965
No 353
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=53.49 E-value=6.7 Score=36.92 Aligned_cols=54 Identities=20% Similarity=0.128 Sum_probs=29.4
Q ss_pred CCCCCCCCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHh--cCCCEEEEecCCchHhHHH
Q 007814 141 PIKNFKDMRFPEPILKKLKAKGIVQPTPIQVQGLPVVL--SGRDMIGIAFTGSGKTLVF 197 (588)
Q Consensus 141 p~~~f~~~~l~~~l~~~l~~~g~~~p~~~Q~~~i~~il--~g~dvii~a~TGsGKTl~~ 197 (588)
|-.+|+++.-.+.....+...-. ... ....+..+- -.+.+++.+|+|+|||...
T Consensus 11 ~~~~~~~i~g~~~~~~~l~~l~~--~~~-~~~~~~~~~~~~~~g~ll~G~~G~GKTtl~ 66 (254)
T 1ixz_A 11 PKVTFKDVAGAEEAKEELKEIVE--FLK-NPSRFHEMGARIPKGVLLVGPPGVGKTHLA 66 (254)
T ss_dssp CSCCGGGCCSCHHHHHHHHHHHH--HHH-CHHHHHHTTCCCCSEEEEECCTTSSHHHHH
T ss_pred CCCCHHHhCCcHHHHHHHHHHHH--HHH-CHHHHHHcCCCCCCeEEEECCCCCCHHHHH
Confidence 44577777666666555544310 000 012222211 1245999999999999553
No 354
>3gbj_A KIF13B protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, ATP-binding, microtubule, motor protein; HET: ADP; 2.10A {Homo sapiens} SCOP: c.37.1.9
Probab=53.49 E-value=9.1 Score=38.34 Aligned_cols=24 Identities=29% Similarity=0.380 Sum_probs=17.8
Q ss_pred HHHHHhcCCCE--EEEecCCchHhHH
Q 007814 173 GLPVVLSGRDM--IGIAFTGSGKTLV 196 (588)
Q Consensus 173 ~i~~il~g~dv--ii~a~TGsGKTl~ 196 (588)
.+..++.|.|+ +..+.||||||..
T Consensus 84 lv~~~l~G~n~tifAYGqTGSGKTyT 109 (354)
T 3gbj_A 84 ILQNAFDGYNACIFAYGQTGSGKSYT 109 (354)
T ss_dssp HHHHHHTTCCEEEEEEECTTSSHHHH
T ss_pred HHHHHhCCceeEEEeeCCCCCCCceE
Confidence 44556788875 4458999999965
No 355
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=53.44 E-value=11 Score=45.10 Aligned_cols=40 Identities=30% Similarity=0.375 Sum_probs=26.1
Q ss_pred CCCcceeEecCcccccccCcHHHHHHHHHhhhhcceeEEEe
Q 007814 297 LDNCRYLTLDEADRLVDLGFEDDIREVFDHFKAQRQTLLFS 337 (588)
Q Consensus 297 l~~~~~lViDEah~l~~~~~~~~i~~i~~~~~~~~q~l~~S 337 (588)
+++-+++|+|||=--+|..-+..+...++....++ ++++=
T Consensus 1233 lr~~~ILiLDEaTSaLD~~tE~~Iq~~l~~~~~~~-TvI~I 1272 (1321)
T 4f4c_A 1233 VRNPKILLLDEATSALDTESEKVVQEALDRAREGR-TCIVI 1272 (1321)
T ss_dssp HSCCSEEEEESCCCSTTSHHHHHHHHHHTTTSSSS-EEEEE
T ss_pred HhCCCEEEEeCccccCCHHHHHHHHHHHHHHcCCC-EEEEe
Confidence 34567899999988777665666666666655444 44433
No 356
>1w36_B RECB, exodeoxyribonuclease V beta chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 c.52.1.24 PDB: 3k70_B*
Probab=53.41 E-value=16 Score=43.03 Aligned_cols=66 Identities=14% Similarity=0.087 Sum_probs=43.7
Q ss_pred cCCCEEEEecCCchHhHHHHHHHHHHHHhhcccCCC-CCCCCCEEEEEcCCHHHHHHHHHHHHHHhhc
Q 007814 179 SGRDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPI-VPGEGPFCLIVCPSRELARQTYEVVEQFLTP 245 (588)
Q Consensus 179 ~g~dvii~a~TGsGKTl~~~lp~l~~~~~~~~~~~~-~~~~~~~~Lil~Ptr~La~Q~~~~~~~~~~~ 245 (588)
.| ..+|.|.-|||||.+-.--++..++........ .+-.-..+|+|+=|++-|.++.+++.+.+..
T Consensus 16 ~g-~~lV~AsAGSGKT~~L~~r~lrLll~~g~~~~~~~~~~~~~ILvvTFT~aAA~EMr~RI~~~L~~ 82 (1180)
T 1w36_B 16 QG-ERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEAATAELRGRIRSNIHE 82 (1180)
T ss_dssp SS-CEEEECCTTSCHHHHHHHHHHHHHTTCSSSSSCSSCCCGGGEEEEESCHHHHHHHHHHHHHHHHH
T ss_pred CC-CEEEEECCCCCHHHHHHHHHHHHHhcCCcccccCCCCCHHHEEEEeccHHHHHHHHHHHHHHHHH
Confidence 44 459999999999977666666655432100000 0012236899999999999999998876543
No 357
>1v8k_A Kinesin-like protein KIF2C; microtubule destabilizer, structural P; HET: ANP; 2.25A {Mus musculus} SCOP: c.37.1.9 PDB: 1v8j_A* 2gry_A*
Probab=53.39 E-value=9.2 Score=39.04 Aligned_cols=24 Identities=29% Similarity=0.394 Sum_probs=17.2
Q ss_pred HHHHHhcCCCE--EEEecCCchHhHH
Q 007814 173 GLPVVLSGRDM--IGIAFTGSGKTLV 196 (588)
Q Consensus 173 ~i~~il~g~dv--ii~a~TGsGKTl~ 196 (588)
.+..++.|-|+ +..+.||||||..
T Consensus 146 lV~~~l~G~N~tifAYGQTGSGKTyT 171 (410)
T 1v8k_A 146 LVQTIFEGGKATCFAYGQTGSGKTHT 171 (410)
T ss_dssp HHHHHHTTCEEEEEEEESTTSSHHHH
T ss_pred HHHHHhcCCceeEEeecCCCCCCCeE
Confidence 34456688765 4458999999965
No 358
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=53.21 E-value=6.7 Score=40.81 Aligned_cols=19 Identities=32% Similarity=0.471 Sum_probs=16.1
Q ss_pred cCCCEEEEecCCchHhHHH
Q 007814 179 SGRDMIGIAFTGSGKTLVF 197 (588)
Q Consensus 179 ~g~dvii~a~TGsGKTl~~ 197 (588)
.++++++.+|+|+|||..+
T Consensus 62 ~~~~iLl~GppGtGKT~la 80 (456)
T 2c9o_A 62 AGRAVLLAGPPGTGKTALA 80 (456)
T ss_dssp TTCEEEEECCTTSSHHHHH
T ss_pred CCCeEEEECCCcCCHHHHH
Confidence 3468999999999999665
No 359
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=53.12 E-value=11 Score=34.41 Aligned_cols=70 Identities=14% Similarity=0.157 Sum_probs=47.8
Q ss_pred CCCEEEEeCccccHHHHHHHHHHc--------CCcEEEEeCCCCHHHHHHHHHHHhcCCcEEEEEcCc-----cc-cCCC
Q 007814 394 PPPVLIFCENKADVDDIHEYLLLK--------GVEAVAVHGGKDQEEREYAISSFKAGKKDVLVATDV-----AS-KGLD 459 (588)
Q Consensus 394 ~~~viIF~~s~~~~~~l~~~L~~~--------g~~~~~ihg~~~~~~R~~~~~~f~~g~~~vLVaT~~-----~~-~GlD 459 (588)
+.++||.++++.-+..+++.+... ++.+..++|+.+..+... .+ ....+|+|+|.- +. ..++
T Consensus 72 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~---~~-~~~~~Iiv~Tp~~l~~~l~~~~~~ 147 (219)
T 1q0u_A 72 EVQAVITAPTRELATQIYHETLKITKFCPKDRMIVARCLIGGTDKQKALE---KL-NVQPHIVIGTPGRINDFIREQALD 147 (219)
T ss_dssp SCCEEEECSSHHHHHHHHHHHHHHHTTSCGGGCCCEEEECCCSHHHHTTC---CC-SSCCSEEEECHHHHHHHHHTTCCC
T ss_pred CceEEEEcCcHHHHHHHHHHHHHHhhhcccccceEEEEEeCCCCHHHHHH---Hc-CCCCCEEEeCHHHHHHHHHcCCCC
Confidence 468999999999999888877654 678888999876443211 11 245789999952 22 2355
Q ss_pred CCCcceEE
Q 007814 460 FPDIQHVI 467 (588)
Q Consensus 460 ip~v~~VI 467 (588)
+..+++||
T Consensus 148 ~~~~~~lV 155 (219)
T 1q0u_A 148 VHTAHILV 155 (219)
T ss_dssp GGGCCEEE
T ss_pred cCcceEEE
Confidence 66677666
No 360
>1goj_A Kinesin, kinesin heavy chain; motor protein, ATPase; HET: ADP; 2.3A {Neurospora crassa} SCOP: c.37.1.9
Probab=53.04 E-value=8.8 Score=38.46 Aligned_cols=23 Identities=26% Similarity=0.434 Sum_probs=16.8
Q ss_pred HHHHhcCCCE--EEEecCCchHhHH
Q 007814 174 LPVVLSGRDM--IGIAFTGSGKTLV 196 (588)
Q Consensus 174 i~~il~g~dv--ii~a~TGsGKTl~ 196 (588)
+..++.|.|+ +..+.||||||..
T Consensus 73 v~~~l~G~n~tifAYGqTGSGKTyT 97 (355)
T 1goj_A 73 VDDILNGYNGTVFAYGQTGAGKSYT 97 (355)
T ss_dssp HHHHTTTCCEEEEEECSTTSSHHHH
T ss_pred HHHHhCCCcceEEEECCCCCCcceE
Confidence 4456688775 4458999999955
No 361
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=53.02 E-value=6.6 Score=35.46 Aligned_cols=19 Identities=26% Similarity=0.364 Sum_probs=15.7
Q ss_pred cCCCEEEEecCCchHhHHH
Q 007814 179 SGRDMIGIAFTGSGKTLVF 197 (588)
Q Consensus 179 ~g~dvii~a~TGsGKTl~~ 197 (588)
.|.-+.+++++|||||.+.
T Consensus 24 ~g~~i~l~G~sGsGKSTl~ 42 (200)
T 3uie_A 24 KGCVIWVTGLSGSGKSTLA 42 (200)
T ss_dssp CCEEEEEECSTTSSHHHHH
T ss_pred CCeEEEEECCCCCCHHHHH
Confidence 5667888999999999654
No 362
>1t5c_A CENP-E protein, centromeric protein E; kinesin motor-domain-ADP complex, stranded beta-sheet core with solvent exposed alpha-helices; HET: ADP PIN; 2.50A {Homo sapiens}
Probab=53.00 E-value=9.4 Score=38.14 Aligned_cols=25 Identities=24% Similarity=0.282 Sum_probs=18.0
Q ss_pred HHHHHhcCCCE--EEEecCCchHhHHH
Q 007814 173 GLPVVLSGRDM--IGIAFTGSGKTLVF 197 (588)
Q Consensus 173 ~i~~il~g~dv--ii~a~TGsGKTl~~ 197 (588)
.+..++.|.|+ +..+.||||||...
T Consensus 69 lv~~~l~G~n~tifAYGqTGSGKTyTM 95 (349)
T 1t5c_A 69 IIDSAIQGYNGTIFAYGQTASGKTYTM 95 (349)
T ss_dssp HHHHHHTTCCEEEEEEESTTSSHHHHH
T ss_pred HHHHHHcCCccceeeecCCCCCCCeEE
Confidence 34556788775 44589999999653
No 363
>2h58_A Kinesin-like protein KIFC3 variant; motor domain, ADP, structural genomics, structur Al genomics consortium, SGC; HET: ADP; 1.85A {Homo sapiens}
Probab=52.86 E-value=9.1 Score=37.91 Aligned_cols=25 Identities=24% Similarity=0.375 Sum_probs=19.0
Q ss_pred HHHHHHhcCCCE--EEEecCCchHhHH
Q 007814 172 QGLPVVLSGRDM--IGIAFTGSGKTLV 196 (588)
Q Consensus 172 ~~i~~il~g~dv--ii~a~TGsGKTl~ 196 (588)
..+..++.|.|+ +..+.||||||..
T Consensus 71 ~lv~~~l~G~n~tifAYGqTGSGKTyT 97 (330)
T 2h58_A 71 ALVTSCIDGFNVCIFAYGQTGAGKTYT 97 (330)
T ss_dssp HHHHHHHTTCCEEEEEESSTTSSHHHH
T ss_pred HHHHHHhCCCEEEEEeECCCCCCCcEE
Confidence 356677889875 4458999999965
No 364
>3lre_A Kinesin-like protein KIF18A; motor protein, nucleotide binding, microtubule binding, ATP- cell projection, cytoskeleton, glycoprotein, microtubule; HET: ADP; 2.20A {Homo sapiens} SCOP: c.37.1.0
Probab=52.78 E-value=8.9 Score=38.43 Aligned_cols=24 Identities=33% Similarity=0.419 Sum_probs=17.5
Q ss_pred HHHHHhcCCCE--EEEecCCchHhHH
Q 007814 173 GLPVVLSGRDM--IGIAFTGSGKTLV 196 (588)
Q Consensus 173 ~i~~il~g~dv--ii~a~TGsGKTl~ 196 (588)
.+..++.|.|+ +..+.||||||..
T Consensus 97 lv~~~l~G~n~tifAYGqTGSGKTyT 122 (355)
T 3lre_A 97 ILRSFLNGYNCTVLAYGATGAGKTHT 122 (355)
T ss_dssp HHHHHTTTCCEEEEEECCTTSSHHHH
T ss_pred HHHHHhCCCceEEEEeCCCCCCceee
Confidence 34556688875 4448999999965
No 365
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=52.74 E-value=18 Score=37.43 Aligned_cols=18 Identities=33% Similarity=0.449 Sum_probs=15.6
Q ss_pred CCCEEEEecCCchHhHHH
Q 007814 180 GRDMIGIAFTGSGKTLVF 197 (588)
Q Consensus 180 g~dvii~a~TGsGKTl~~ 197 (588)
.+++++.+|+|+|||.++
T Consensus 50 ~~~iLl~GppGtGKT~la 67 (444)
T 1g41_A 50 PKNILMIGPTGVGKTEIA 67 (444)
T ss_dssp CCCEEEECCTTSSHHHHH
T ss_pred CceEEEEcCCCCCHHHHH
Confidence 478999999999999654
No 366
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=52.64 E-value=6.8 Score=34.93 Aligned_cols=19 Identities=21% Similarity=0.144 Sum_probs=15.9
Q ss_pred cCCCEEEEecCCchHhHHH
Q 007814 179 SGRDMIGIAFTGSGKTLVF 197 (588)
Q Consensus 179 ~g~dvii~a~TGsGKTl~~ 197 (588)
.+.-+++.++.|||||.+.
T Consensus 8 ~~~~I~l~G~~GsGKsT~~ 26 (196)
T 2c95_A 8 KTNIIFVVGGPGSGKGTQC 26 (196)
T ss_dssp TSCEEEEEECTTSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 5667899999999999664
No 367
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=52.62 E-value=10 Score=34.58 Aligned_cols=16 Identities=25% Similarity=0.210 Sum_probs=13.7
Q ss_pred CEEEEecCCchHhHHH
Q 007814 182 DMIGIAFTGSGKTLVF 197 (588)
Q Consensus 182 dvii~a~TGsGKTl~~ 197 (588)
.+++.||+|+|||...
T Consensus 47 ~~ll~G~~G~GKT~l~ 62 (250)
T 1njg_A 47 AYLFSGTRGVGKTSIA 62 (250)
T ss_dssp EEEEECSTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 5899999999999653
No 368
>1x88_A Kinesin-like protein KIF11; switch II, motor domain, NECK linker, cell cycle; HET: ADP NAT; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 3hqd_A* 3ken_A* 2pg2_A* 1yrs_A* 2fme_A* 2g1q_A* 2gm1_A* 1ii6_A* 2uyi_A* 2uym_A* 2wog_A* 2x2r_A* 2x7c_A* 2x7d_A* 2x7e_A* 2xae_A* 3k3b_A* 3k5e_A* 3l9h_A* 1q0b_A* ...
Probab=52.55 E-value=8.8 Score=38.54 Aligned_cols=24 Identities=33% Similarity=0.437 Sum_probs=17.5
Q ss_pred HHHHHhcCCCE--EEEecCCchHhHH
Q 007814 173 GLPVVLSGRDM--IGIAFTGSGKTLV 196 (588)
Q Consensus 173 ~i~~il~g~dv--ii~a~TGsGKTl~ 196 (588)
.+..++.|-|+ +..+.||||||..
T Consensus 80 lv~~~l~G~n~tifAYGqTGSGKTyT 105 (359)
T 1x88_A 80 ILDEVIMGYNCTIFAYGQTGTGKTFT 105 (359)
T ss_dssp HHHHHHTTCEEEEEEEECTTSSHHHH
T ss_pred hHHHHhCCCceEEEEeCCCCCCCceE
Confidence 44556788875 4458999999955
No 369
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=52.27 E-value=6 Score=35.74 Aligned_cols=17 Identities=29% Similarity=0.444 Sum_probs=14.4
Q ss_pred CCEEEEecCCchHhHHH
Q 007814 181 RDMIGIAFTGSGKTLVF 197 (588)
Q Consensus 181 ~dvii~a~TGsGKTl~~ 197 (588)
.-++++|+.|||||.+.
T Consensus 19 ~~I~l~G~~GsGKSTla 35 (202)
T 3t61_A 19 GSIVVMGVSGSGKSSVG 35 (202)
T ss_dssp SCEEEECSTTSCHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 46899999999999664
No 370
>1qxn_A SUD, sulfide dehydrogenase; polysulfide-sulfur transferase, homodimer; NMR {Wolinella succinogenes} SCOP: c.46.1.3
Probab=52.24 E-value=13 Score=31.34 Aligned_cols=37 Identities=27% Similarity=0.424 Sum_probs=32.3
Q ss_pred CCCCEEEEeCccccHHHHHHHHHHcCC-cEEEEeCCCC
Q 007814 393 TPPPVLIFCENKADVDDIHEYLLLKGV-EAVAVHGGKD 429 (588)
Q Consensus 393 ~~~~viIF~~s~~~~~~l~~~L~~~g~-~~~~ihg~~~ 429 (588)
...+++|||.+-..+...+..|...|+ ++..+.||+.
T Consensus 81 ~~~~ivvyC~~G~rS~~aa~~L~~~G~~~v~~l~GG~~ 118 (137)
T 1qxn_A 81 PEKPVVVFCKTAARAALAGKTLREYGFKTIYNSEGGMD 118 (137)
T ss_dssp TTSCEEEECCSSSCHHHHHHHHHHHTCSCEEEESSCHH
T ss_pred CCCeEEEEcCCCcHHHHHHHHHHHcCCcceEEEcCcHH
Confidence 456899999999999999999999999 5888999853
No 371
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=52.06 E-value=5.8 Score=35.31 Aligned_cols=18 Identities=22% Similarity=0.167 Sum_probs=14.6
Q ss_pred CCCEEEEecCCchHhHHH
Q 007814 180 GRDMIGIAFTGSGKTLVF 197 (588)
Q Consensus 180 g~dvii~a~TGsGKTl~~ 197 (588)
+.-++++++.|||||...
T Consensus 5 ~~~I~l~G~~GsGKST~~ 22 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLS 22 (193)
T ss_dssp CEEEEEEESTTSSHHHHH
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 445788999999999654
No 372
>2jtq_A Phage shock protein E; solution structure rhodanese, stress response, transferase; NMR {Escherichia coli} PDB: 2jtr_A 2jts_A
Probab=51.96 E-value=22 Score=26.83 Aligned_cols=37 Identities=19% Similarity=0.320 Sum_probs=29.6
Q ss_pred cCCCCEEEEeCccccHHHHHHHHHHcCCc-EEEEeCCCC
Q 007814 392 KTPPPVLIFCENKADVDDIHEYLLLKGVE-AVAVHGGKD 429 (588)
Q Consensus 392 ~~~~~viIF~~s~~~~~~l~~~L~~~g~~-~~~ihg~~~ 429 (588)
....++++||.+-..+...+..|...|+. +..+ ||+.
T Consensus 39 ~~~~~ivv~C~~g~rs~~aa~~L~~~G~~~v~~l-GG~~ 76 (85)
T 2jtq_A 39 DKNDTVKVYCNAGRQSGQAKEILSEMGYTHVENA-GGLK 76 (85)
T ss_dssp CTTSEEEEEESSSHHHHHHHHHHHHTTCSSEEEE-EETT
T ss_pred CCCCcEEEEcCCCchHHHHHHHHHHcCCCCEEec-cCHH
Confidence 34568999999988899999999999996 4445 7654
No 373
>3cob_A Kinesin heavy chain-like protein; motor, switch II, loop L11, conformation, nucleotide, ATP-binding, microtubule, motor protein; HET: ADP; 2.20A {Solanum tuberosum} SCOP: c.37.1.9 PDB: 3cnz_A* 1sdm_A* 3h4s_A*
Probab=51.94 E-value=8.2 Score=38.88 Aligned_cols=24 Identities=29% Similarity=0.340 Sum_probs=18.4
Q ss_pred HHHHHhcCCCEEE--EecCCchHhHH
Q 007814 173 GLPVVLSGRDMIG--IAFTGSGKTLV 196 (588)
Q Consensus 173 ~i~~il~g~dvii--~a~TGsGKTl~ 196 (588)
.+..++.|.|+.+ .+.||||||..
T Consensus 71 lv~~~l~G~n~tifAYGqTGSGKTyT 96 (369)
T 3cob_A 71 LVQSAVDGYNVCIFAYGQTGSGKTFT 96 (369)
T ss_dssp HHHHHHTTCEEEEEEEECTTSSHHHH
T ss_pred hhHhhhcCCceEEEEECCCCCCCeEe
Confidence 5666788987544 48999999965
No 374
>3t0q_A AGR253WP; kinesin, alpha and beta proteins, P-loop containing nucleosi triphosphate hydrolases, microtubule motor protein; HET: ADP; 2.35A {Ashbya gossypii}
Probab=51.91 E-value=9 Score=38.28 Aligned_cols=25 Identities=32% Similarity=0.403 Sum_probs=19.2
Q ss_pred HHHHHhcCCCEE--EEecCCchHhHHH
Q 007814 173 GLPVVLSGRDMI--GIAFTGSGKTLVF 197 (588)
Q Consensus 173 ~i~~il~g~dvi--i~a~TGsGKTl~~ 197 (588)
.+..++.|-|+. ..+.||||||...
T Consensus 77 lv~~~l~G~n~tifAYGqTGSGKTyTm 103 (349)
T 3t0q_A 77 LVQSSLDGYNVCIFAYGQTGSGKTYTM 103 (349)
T ss_dssp HHHGGGTTCEEEEEEECSTTSSHHHHH
T ss_pred HHHHHHCCcceeEEEeCCCCCCCceEe
Confidence 667778898764 4489999999663
No 375
>3flh_A Uncharacterized protein LP_1913; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.00A {Lactobacillus plantarum} PDB: 3fnj_A 3i3u_A
Probab=51.86 E-value=7.9 Score=32.03 Aligned_cols=36 Identities=17% Similarity=0.164 Sum_probs=31.2
Q ss_pred CCCEEEEeCcccc--HHHHHHHHHHcCCcEEEEeCCCC
Q 007814 394 PPPVLIFCENKAD--VDDIHEYLLLKGVEAVAVHGGKD 429 (588)
Q Consensus 394 ~~~viIF~~s~~~--~~~l~~~L~~~g~~~~~ihg~~~ 429 (588)
..+++|||.+-.. +...+..|...|+++..+.||+.
T Consensus 71 ~~~ivvyC~~g~r~~s~~a~~~L~~~G~~v~~l~GG~~ 108 (124)
T 3flh_A 71 AKTYVVYDWTGGTTLGKTALLVLLSAGFEAYELAGALE 108 (124)
T ss_dssp TSEEEEECSSSSCSHHHHHHHHHHHHTCEEEEETTHHH
T ss_pred CCeEEEEeCCCCchHHHHHHHHHHHcCCeEEEeCCcHH
Confidence 4589999999887 89999999999999888888753
No 376
>2zfi_A Kinesin-like protein KIF1A, kinesin heavy chain isoform 5C; alpha and beta protein, enzyme, ATPase, P-loop, motor protein, ATP-binding, coiled coil; HET: ADP; 1.55A {Mus musculus} SCOP: c.37.1.9 PDB: 1vfw_A* 1vfx_A* 1vfz_A* 1vfv_A* 2zfj_A* 2zfk_A* 2zfl_A* 2zfm_A* 1i5s_A* 1i6i_A* 2hxf_C* 1ia0_K* 2hxh_C*
Probab=51.80 E-value=9.7 Score=38.32 Aligned_cols=24 Identities=25% Similarity=0.380 Sum_probs=17.4
Q ss_pred HHHHHhcCCCEE--EEecCCchHhHH
Q 007814 173 GLPVVLSGRDMI--GIAFTGSGKTLV 196 (588)
Q Consensus 173 ~i~~il~g~dvi--i~a~TGsGKTl~ 196 (588)
.+..++.|.|+. ..+.||||||..
T Consensus 81 lv~~~l~G~N~tifAYGqTGSGKTyT 106 (366)
T 2zfi_A 81 MLQHAFEGYNVCIFAYGQTGAGKSYT 106 (366)
T ss_dssp HHHHHHTTCCEEEEEECSTTSSHHHH
T ss_pred HHHHHhcCCeeEEEEeCCCCCCCceE
Confidence 345567888754 448999999955
No 377
>2fsx_A RV0390, COG0607: rhodanese-related sulfurtransferase; RV0390 BR SAD DATA with FBAR, structural genomics, PSI; 1.80A {Mycobacterium tuberculosis}
Probab=51.68 E-value=16 Score=31.14 Aligned_cols=37 Identities=22% Similarity=0.312 Sum_probs=31.4
Q ss_pred CCCCEEEEeCccccHHHHHHHHHHcCC-cEEEEeCCCC
Q 007814 393 TPPPVLIFCENKADVDDIHEYLLLKGV-EAVAVHGGKD 429 (588)
Q Consensus 393 ~~~~viIF~~s~~~~~~l~~~L~~~g~-~~~~ihg~~~ 429 (588)
...+++|||.+-..+...+..|...|+ ++..+.||+.
T Consensus 79 ~~~~ivvyC~~G~rS~~aa~~L~~~G~~~v~~l~GG~~ 116 (148)
T 2fsx_A 79 HERPVIFLCRSGNRSIGAAEVATEAGITPAYNVLDGFE 116 (148)
T ss_dssp --CCEEEECSSSSTHHHHHHHHHHTTCCSEEEETTTTT
T ss_pred CCCEEEEEcCCChhHHHHHHHHHHcCCcceEEEcCChh
Confidence 456899999998899999999999999 5888999874
No 378
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=51.62 E-value=8.5 Score=38.01 Aligned_cols=19 Identities=16% Similarity=0.198 Sum_probs=15.8
Q ss_pred cCCCEEEEecCCchHhHHH
Q 007814 179 SGRDMIGIAFTGSGKTLVF 197 (588)
Q Consensus 179 ~g~dvii~a~TGsGKTl~~ 197 (588)
...++++.||+|+|||.+.
T Consensus 44 ~~~~vLl~G~~GtGKT~la 62 (350)
T 1g8p_A 44 GIGGVLVFGDRGTGKSTAV 62 (350)
T ss_dssp GGCCEEEECCGGGCTTHHH
T ss_pred CCceEEEECCCCccHHHHH
Confidence 4567999999999999654
No 379
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=51.61 E-value=8.8 Score=33.84 Aligned_cols=16 Identities=25% Similarity=0.135 Sum_probs=13.0
Q ss_pred CEEEEecCCchHhHHH
Q 007814 182 DMIGIAFTGSGKTLVF 197 (588)
Q Consensus 182 dvii~a~TGsGKTl~~ 197 (588)
-.++++++|||||..+
T Consensus 28 ~~~i~G~NGsGKStll 43 (182)
T 3kta_A 28 FTAIVGANGSGKSNIG 43 (182)
T ss_dssp EEEEEECTTSSHHHHH
T ss_pred cEEEECCCCCCHHHHH
Confidence 4578899999999553
No 380
>3u4q_B ATP-dependent helicase/deoxyribonuclease subunit; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_B*
Probab=51.39 E-value=12 Score=44.06 Aligned_cols=31 Identities=13% Similarity=0.000 Sum_probs=25.3
Q ss_pred CEEEEeCcc-ccHHHHHHHHHHcCCcEEEEeC
Q 007814 396 PVLIFCENK-ADVDDIHEYLLLKGVEAVAVHG 426 (588)
Q Consensus 396 ~viIF~~s~-~~~~~l~~~L~~~g~~~~~ihg 426 (588)
-+.|.|.+. ..+..+...|...|+++....+
T Consensus 344 diAVL~R~~~~~~~~i~~~L~~~gIP~~~~~~ 375 (1166)
T 3u4q_B 344 DVAILARQPEDYKDMVKEVFADYEIPYFIDGK 375 (1166)
T ss_dssp GEEEEESCGGGTHHHHHHHHHHTTCCEEESSC
T ss_pred heEEEeCChHHHHHHHHHHHHHcCCCEEECCC
Confidence 488899997 4788999999999999776544
No 381
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=51.35 E-value=8.1 Score=34.36 Aligned_cols=17 Identities=24% Similarity=0.188 Sum_probs=13.6
Q ss_pred CCEEEEecCCchHhHHH
Q 007814 181 RDMIGIAFTGSGKTLVF 197 (588)
Q Consensus 181 ~dvii~a~TGsGKTl~~ 197 (588)
.-+++++|+|||||...
T Consensus 3 ~ii~l~G~~GaGKSTl~ 19 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTC 19 (189)
T ss_dssp EEEEEECSTTSSHHHHH
T ss_pred eEEEEECCCCCcHHHHH
Confidence 34678899999999654
No 382
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=51.35 E-value=7.5 Score=38.91 Aligned_cols=19 Identities=26% Similarity=0.398 Sum_probs=16.1
Q ss_pred cCCCEEEEecCCchHhHHH
Q 007814 179 SGRDMIGIAFTGSGKTLVF 197 (588)
Q Consensus 179 ~g~dvii~a~TGsGKTl~~ 197 (588)
..+.+++.+|+|+|||.++
T Consensus 116 ~~~~vLl~GppGtGKT~la 134 (357)
T 3d8b_A 116 PPKGILLFGPPGTGKTLIG 134 (357)
T ss_dssp CCSEEEEESSTTSSHHHHH
T ss_pred CCceEEEECCCCCCHHHHH
Confidence 4578999999999999664
No 383
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=51.34 E-value=8.9 Score=37.14 Aligned_cols=17 Identities=29% Similarity=0.302 Sum_probs=14.5
Q ss_pred CCEEEEecCCchHhHHH
Q 007814 181 RDMIGIAFTGSGKTLVF 197 (588)
Q Consensus 181 ~dvii~a~TGsGKTl~~ 197 (588)
..+++.+|+|+|||.++
T Consensus 48 ~~~ll~G~~GtGKt~la 64 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELA 64 (311)
T ss_dssp EEEEEESCSSSSHHHHH
T ss_pred eEEEEECCCCcCHHHHH
Confidence 36899999999999654
No 384
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=51.22 E-value=5.7 Score=35.35 Aligned_cols=18 Identities=17% Similarity=0.069 Sum_probs=14.6
Q ss_pred CCCEEEEecCCchHhHHH
Q 007814 180 GRDMIGIAFTGSGKTLVF 197 (588)
Q Consensus 180 g~dvii~a~TGsGKTl~~ 197 (588)
+.-+++.+++|||||...
T Consensus 3 ~~~I~l~G~~GsGKsT~a 20 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQC 20 (196)
T ss_dssp CEEEEEECCTTSSHHHHH
T ss_pred ceEEEEECCCCCCHHHHH
Confidence 345788999999999665
No 385
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=50.99 E-value=9 Score=39.23 Aligned_cols=25 Identities=32% Similarity=0.352 Sum_probs=19.3
Q ss_pred HHHHHHhcCCCEEE--EecCCchHhHH
Q 007814 172 QGLPVVLSGRDMIG--IAFTGSGKTLV 196 (588)
Q Consensus 172 ~~i~~il~g~dvii--~a~TGsGKTl~ 196 (588)
..+..++.|.|+.+ .+.||||||..
T Consensus 129 plv~~~l~G~n~tifAYGqTGSGKTyT 155 (412)
T 3u06_A 129 PLIQSALDGYNICIFAYGQTGSGKTYT 155 (412)
T ss_dssp HHHHHHHTTCCEEEEEESSTTSSHHHH
T ss_pred HHHHHHHCCCceEEEEecCCCCCCeeE
Confidence 46677889987644 48999999965
No 386
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=50.63 E-value=9.3 Score=33.50 Aligned_cols=17 Identities=35% Similarity=0.585 Sum_probs=14.3
Q ss_pred CEEEEecCCchHhHHHH
Q 007814 182 DMIGIAFTGSGKTLVFV 198 (588)
Q Consensus 182 dvii~a~TGsGKTl~~~ 198 (588)
.++++++.|||||.+.-
T Consensus 6 ~i~i~G~~GsGKsTla~ 22 (175)
T 1via_A 6 NIVFIGFMGSGKSTLAR 22 (175)
T ss_dssp CEEEECCTTSCHHHHHH
T ss_pred EEEEEcCCCCCHHHHHH
Confidence 68899999999996643
No 387
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=50.57 E-value=8.4 Score=35.77 Aligned_cols=20 Identities=20% Similarity=0.194 Sum_probs=16.0
Q ss_pred cCCCEEEEecCCchHhHHHH
Q 007814 179 SGRDMIGIAFTGSGKTLVFV 198 (588)
Q Consensus 179 ~g~dvii~a~TGsGKTl~~~ 198 (588)
.+..+++.+++|||||...-
T Consensus 15 ~~~~I~l~G~~GsGKsT~a~ 34 (233)
T 1ak2_A 15 KGVRAVLLGPPGAGKGTQAP 34 (233)
T ss_dssp CCCEEEEECCTTSSHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHH
Confidence 44678999999999996543
No 388
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=50.40 E-value=40 Score=37.05 Aligned_cols=83 Identities=17% Similarity=0.188 Sum_probs=55.0
Q ss_pred CCCEEEEEcCCHHHHHHHHHHHHHHhhc--ccc----------cCC--------------CCceEEEEEcCcchHHHHHH
Q 007814 218 EGPFCLIVCPSRELARQTYEVVEQFLTP--MRD----------AGY--------------PDLRTLLCIGGVDMRSQLEV 271 (588)
Q Consensus 218 ~~~~~Lil~Ptr~La~Q~~~~~~~~~~~--~~~----------~~~--------------~~i~~~~~~gg~~~~~~~~~ 271 (588)
.+..+||.||++.-+..+++.+.+.+.. +.. ... ....+..++|+.+..++...
T Consensus 251 ~~~~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~v~~~h~~l~~~~r~~v 330 (715)
T 2va8_A 251 KNGQVLVFRNSRKMAESTALKIANYMNFVSLDENALSEILKQLDDIEEGGSDEKELLKSLISKGVAYHHAGLSKALRDLI 330 (715)
T ss_dssp TTCCEEEECSSHHHHHHHHHHHHHTTTSSCCCHHHHHHHHHHHHTCCSSCHHHHHHHHHHHTTTEEEECTTSCHHHHHHH
T ss_pred cCCCEEEEECCHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHhhhccccccHHHHHHHhcCEEEECCCCCHHHHHHH
Confidence 3567999999999999998888775321 000 000 01247889999887766544
Q ss_pred Hh----cCCcEEEeChHHHHHHHHcccCCCCCcceeEec
Q 007814 272 VK----RGVHIVVATPGRLKDMLAKKKMNLDNCRYLTLD 306 (588)
Q Consensus 272 l~----~~~~IvV~Tp~~L~~~l~~~~~~l~~~~~lViD 306 (588)
.. ...+|+||| +.+ ..++++..+.+||.+
T Consensus 331 ~~~f~~g~~~vlvaT-----~~l-~~Gidip~~~~VI~~ 363 (715)
T 2va8_A 331 EEGFRQRKIKVIVAT-----PTL-AAGVNLPARTVIIGD 363 (715)
T ss_dssp HHHHHTTCSCEEEEC-----GGG-GGSSCCCBSEEEECC
T ss_pred HHHHHcCCCeEEEEC-----hHH-hcccCCCceEEEEeC
Confidence 33 357999999 343 346778888776643
No 389
>1tq1_A AT5G66040, senescence-associated family protein; CESG, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana} SCOP: c.46.1.3
Probab=50.34 E-value=12 Score=31.03 Aligned_cols=37 Identities=16% Similarity=0.277 Sum_probs=32.3
Q ss_pred CCCCEEEEeCccccHHHHHHHHHHcCCc-EEEEeCCCC
Q 007814 393 TPPPVLIFCENKADVDDIHEYLLLKGVE-AVAVHGGKD 429 (588)
Q Consensus 393 ~~~~viIF~~s~~~~~~l~~~L~~~g~~-~~~ihg~~~ 429 (588)
...+++|||.+-..+...+..|...|+. +..+.||+.
T Consensus 81 ~~~~ivvyC~~G~rs~~aa~~L~~~G~~~v~~l~GG~~ 118 (129)
T 1tq1_A 81 QSDNIIVGCQSGGRSIKATTDLLHAGFTGVKDIVGGYS 118 (129)
T ss_dssp TTSSEEEEESSCSHHHHHHHHHHHHHCCSEEEEECCHH
T ss_pred CCCeEEEECCCCcHHHHHHHHHHHcCCCCeEEeCCcHH
Confidence 4568999999999999999999999995 888999864
No 390
>1f9v_A Kinesin-like protein KAR3; kinesin-related protein, motor protein, microtubinding proteinbule, contractIle protein; HET: ADP; 1.30A {Saccharomyces cerevisiae} SCOP: c.37.1.9 PDB: 1f9t_A* 1f9w_A* 1f9u_A* 3kar_A*
Probab=50.32 E-value=9.3 Score=38.14 Aligned_cols=25 Identities=32% Similarity=0.429 Sum_probs=18.6
Q ss_pred HHHHHhcCCCEE--EEecCCchHhHHH
Q 007814 173 GLPVVLSGRDMI--GIAFTGSGKTLVF 197 (588)
Q Consensus 173 ~i~~il~g~dvi--i~a~TGsGKTl~~ 197 (588)
.+..++.|-|+. ..+.||||||...
T Consensus 76 lv~~~l~G~n~tifAYGqTGSGKTyTM 102 (347)
T 1f9v_A 76 LVQSSLDGYNVCIFAYGQTGSGKTFTM 102 (347)
T ss_dssp HHGGGGGTCCEEEEEECCTTSSHHHHH
T ss_pred HHHHhcCCceeEEEEECCCCCCCcEec
Confidence 556677888754 4589999999653
No 391
>2wbe_C Bipolar kinesin KRP-130; EG5, KLP61F, tubulin, mitosis, GTP-binding, motor protein, cell division, cell cycle, microtubule, ATP-binding; HET: GTP ANP GDP TA1; 9.40A {Drosophila melanogaster}
Probab=50.14 E-value=9.5 Score=38.49 Aligned_cols=24 Identities=33% Similarity=0.397 Sum_probs=17.1
Q ss_pred HHHHHhcCCCEE--EEecCCchHhHH
Q 007814 173 GLPVVLSGRDMI--GIAFTGSGKTLV 196 (588)
Q Consensus 173 ~i~~il~g~dvi--i~a~TGsGKTl~ 196 (588)
.+..++.|.|+. ..+.||||||..
T Consensus 92 lv~~~l~G~n~tifAYGqTGSGKTyT 117 (373)
T 2wbe_C 92 LIEEVLNGYNCTVFAYGQTGTGKTHT 117 (373)
T ss_dssp HHHHHHHTCCEEEEEECSTTSSHHHH
T ss_pred HHHHHhCCceEEEEeecCCCCCccee
Confidence 344566887754 448999999955
No 392
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=50.07 E-value=9.9 Score=38.22 Aligned_cols=17 Identities=24% Similarity=0.270 Sum_probs=13.9
Q ss_pred CEEEEecCCchHhHHHH
Q 007814 182 DMIGIAFTGSGKTLVFV 198 (588)
Q Consensus 182 dvii~a~TGsGKTl~~~ 198 (588)
-.++++|||||||..+-
T Consensus 25 ~~~i~G~NGaGKTTll~ 41 (365)
T 3qf7_A 25 ITVVEGPNGAGKSSLFE 41 (365)
T ss_dssp EEEEECCTTSSHHHHHH
T ss_pred eEEEECCCCCCHHHHHH
Confidence 46789999999996653
No 393
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=49.97 E-value=8 Score=39.19 Aligned_cols=19 Identities=26% Similarity=0.471 Sum_probs=16.2
Q ss_pred cCCCEEEEecCCchHhHHH
Q 007814 179 SGRDMIGIAFTGSGKTLVF 197 (588)
Q Consensus 179 ~g~dvii~a~TGsGKTl~~ 197 (588)
..+++++.+|+|+|||.++
T Consensus 147 ~~~~vLL~GppGtGKT~la 165 (389)
T 3vfd_A 147 PARGLLLFGPPGNGKTMLA 165 (389)
T ss_dssp CCSEEEEESSTTSCHHHHH
T ss_pred CCceEEEECCCCCCHHHHH
Confidence 3578999999999999664
No 394
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=49.75 E-value=8.2 Score=34.11 Aligned_cols=17 Identities=24% Similarity=0.393 Sum_probs=14.4
Q ss_pred CCEEEEecCCchHhHHH
Q 007814 181 RDMIGIAFTGSGKTLVF 197 (588)
Q Consensus 181 ~dvii~a~TGsGKTl~~ 197 (588)
..+++++++|||||.+.
T Consensus 3 ~~I~l~G~~GsGKsT~a 19 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIG 19 (184)
T ss_dssp CSEEEECSTTSSHHHHH
T ss_pred CeEEEECCCCCCHHHHH
Confidence 45889999999999665
No 395
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=49.73 E-value=4.8 Score=38.27 Aligned_cols=18 Identities=28% Similarity=0.464 Sum_probs=15.2
Q ss_pred CCCEEEEecCCchHhHHH
Q 007814 180 GRDMIGIAFTGSGKTLVF 197 (588)
Q Consensus 180 g~dvii~a~TGsGKTl~~ 197 (588)
.+.+++.||+|+|||...
T Consensus 44 ~~~vll~G~~GtGKT~la 61 (268)
T 2r62_A 44 PKGVLLVGPPGTGKTLLA 61 (268)
T ss_dssp CSCCCCBCSSCSSHHHHH
T ss_pred CceEEEECCCCCcHHHHH
Confidence 467999999999999664
No 396
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=49.56 E-value=9.1 Score=34.07 Aligned_cols=16 Identities=31% Similarity=0.358 Sum_probs=13.1
Q ss_pred CEEEEecCCchHhHHH
Q 007814 182 DMIGIAFTGSGKTLVF 197 (588)
Q Consensus 182 dvii~a~TGsGKTl~~ 197 (588)
.+.+++|.|+|||...
T Consensus 2 ~i~l~G~nGsGKTTLl 17 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLV 17 (178)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4678999999999553
No 397
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=49.56 E-value=10 Score=33.92 Aligned_cols=44 Identities=18% Similarity=0.195 Sum_probs=23.5
Q ss_pred EEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEEEEEcCCHHHHHHHHHHHHH
Q 007814 183 MIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFCLIVCPSRELARQTYEVVEQ 241 (588)
Q Consensus 183 vii~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Q~~~~~~~ 241 (588)
+++.+++|||||..+.- +. . . +..++|++.....-..+.+.+..
T Consensus 2 ilV~Gg~~SGKS~~A~~-la----~---------~-~~~~~yiaT~~~~d~e~~~rI~~ 45 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAEA-LI----G---------D-APQVLYIATSQILDDEMAARIQH 45 (180)
T ss_dssp EEEEECTTSSHHHHHHH-HH----C---------S-CSSEEEEECCCC------CHHHH
T ss_pred EEEECCCCCcHHHHHHH-HH----h---------c-CCCeEEEecCCCCCHHHHHHHHH
Confidence 68899999999954321 11 1 1 34578888765443334333333
No 398
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=49.42 E-value=16 Score=32.32 Aligned_cols=20 Identities=30% Similarity=0.325 Sum_probs=15.7
Q ss_pred cCCCEEEEecCCchHhHHHH
Q 007814 179 SGRDMIGIAFTGSGKTLVFV 198 (588)
Q Consensus 179 ~g~dvii~a~TGsGKTl~~~ 198 (588)
.|.-++++++.|||||...-
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~ 31 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIAT 31 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHH
Confidence 45568889999999996543
No 399
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=49.27 E-value=6.9 Score=36.27 Aligned_cols=19 Identities=32% Similarity=0.302 Sum_probs=11.8
Q ss_pred cCCCEEEEecCCchHhHHH
Q 007814 179 SGRDMIGIAFTGSGKTLVF 197 (588)
Q Consensus 179 ~g~dvii~a~TGsGKTl~~ 197 (588)
.|.-+.+++|+|||||...
T Consensus 26 ~G~ii~l~Gp~GsGKSTl~ 44 (231)
T 3lnc_A 26 VGVILVLSSPSGCGKTTVA 44 (231)
T ss_dssp CCCEEEEECSCC----CHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 5777888999999999553
No 400
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=49.23 E-value=7.8 Score=34.84 Aligned_cols=19 Identities=26% Similarity=0.209 Sum_probs=15.7
Q ss_pred cCCCEEEEecCCchHhHHH
Q 007814 179 SGRDMIGIAFTGSGKTLVF 197 (588)
Q Consensus 179 ~g~dvii~a~TGsGKTl~~ 197 (588)
.|.-+++.|+.|||||...
T Consensus 3 ~~~~I~l~G~~GsGKsT~~ 21 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQC 21 (204)
T ss_dssp CCCEEEEECCTTSSHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHH
Confidence 4567889999999999664
No 401
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=49.21 E-value=8.2 Score=41.70 Aligned_cols=15 Identities=20% Similarity=0.326 Sum_probs=13.9
Q ss_pred CEEEEecCCchHhHH
Q 007814 182 DMIGIAFTGSGKTLV 196 (588)
Q Consensus 182 dvii~a~TGsGKTl~ 196 (588)
++++.||+|+|||..
T Consensus 329 ~vLL~GppGtGKT~L 343 (595)
T 3f9v_A 329 HILIIGDPGTAKSQM 343 (595)
T ss_dssp CEEEEESSCCTHHHH
T ss_pred ceEEECCCchHHHHH
Confidence 899999999999955
No 402
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=49.18 E-value=9.1 Score=37.86 Aligned_cols=17 Identities=24% Similarity=0.219 Sum_probs=14.8
Q ss_pred CCEEEEecCCchHhHHH
Q 007814 181 RDMIGIAFTGSGKTLVF 197 (588)
Q Consensus 181 ~dvii~a~TGsGKTl~~ 197 (588)
..+++.+|+|+|||..+
T Consensus 52 ~~~ll~Gp~G~GKTTLa 68 (334)
T 1in4_A 52 DHVLLAGPPGLGKTTLA 68 (334)
T ss_dssp CCEEEESSTTSSHHHHH
T ss_pred CeEEEECCCCCcHHHHH
Confidence 67999999999999654
No 403
>2heh_A KIF2C protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, structural protein; HET: ADP; 2.15A {Homo sapiens} PDB: 3edl_D*
Probab=49.17 E-value=10 Score=38.42 Aligned_cols=25 Identities=28% Similarity=0.400 Sum_probs=17.8
Q ss_pred HHHHHhcCCCE--EEEecCCchHhHHH
Q 007814 173 GLPVVLSGRDM--IGIAFTGSGKTLVF 197 (588)
Q Consensus 173 ~i~~il~g~dv--ii~a~TGsGKTl~~ 197 (588)
.+..++.|.|+ +..+.||||||...
T Consensus 126 lv~~~l~G~N~tifAYGQTGSGKTyTM 152 (387)
T 2heh_A 126 LVQTIFEGGKATCFAYGQTGSGKTHTM 152 (387)
T ss_dssp HHHHHHTTCEEEEEEESCTTSSHHHHH
T ss_pred HHHHHhcCCceEEEEecCCCCCCCeEe
Confidence 34556788775 44589999999663
No 404
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=49.17 E-value=15 Score=35.84 Aligned_cols=19 Identities=21% Similarity=0.329 Sum_probs=15.2
Q ss_pred cCCCEEEEecCCchHhHHH
Q 007814 179 SGRDMIGIAFTGSGKTLVF 197 (588)
Q Consensus 179 ~g~dvii~a~TGsGKTl~~ 197 (588)
.|.-+.+++|+|+|||...
T Consensus 99 ~g~vi~lvG~nGsGKTTll 117 (302)
T 3b9q_A 99 KPAVIMIVGVNGGGKTTSL 117 (302)
T ss_dssp SCEEEEEECCTTSCHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHH
Confidence 4567788999999999553
No 405
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=49.10 E-value=9.2 Score=33.22 Aligned_cols=19 Identities=32% Similarity=0.483 Sum_probs=15.5
Q ss_pred CCEEEEecCCchHhHHHHH
Q 007814 181 RDMIGIAFTGSGKTLVFVL 199 (588)
Q Consensus 181 ~dvii~a~TGsGKTl~~~l 199 (588)
+++++.++.|||||.+.-.
T Consensus 8 ~~i~l~G~~GsGKSTva~~ 26 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQE 26 (168)
T ss_dssp CEEEEESCTTSSHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHH
Confidence 5789999999999976533
No 406
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=49.05 E-value=8.7 Score=36.76 Aligned_cols=54 Identities=20% Similarity=0.128 Sum_probs=29.7
Q ss_pred CCCCCCCCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHh--cCCCEEEEecCCchHhHHH
Q 007814 141 PIKNFKDMRFPEPILKKLKAKGIVQPTPIQVQGLPVVL--SGRDMIGIAFTGSGKTLVF 197 (588)
Q Consensus 141 p~~~f~~~~l~~~l~~~l~~~g~~~p~~~Q~~~i~~il--~g~dvii~a~TGsGKTl~~ 197 (588)
|-.+|+++.-.+.+...+...-. ... ....+..+- -.+.+++.+|+|+|||...
T Consensus 35 ~~~~~~~i~g~~~~~~~l~~l~~--~~~-~~~~l~~~~~~~~~gvll~Gp~GtGKTtl~ 90 (278)
T 1iy2_A 35 PKVTFKDVAGAEEAKEELKEIVE--FLK-NPSRFHEMGARIPKGVLLVGPPGVGKTHLA 90 (278)
T ss_dssp CCCCGGGSSSCHHHHHHHHHHHH--HHH-CHHHHHHTTCCCCCEEEEECCTTSSHHHHH
T ss_pred CCCCHHHhCChHHHHHHHHHHHH--HHH-CHHHHHHcCCCCCCeEEEECCCcChHHHHH
Confidence 44567777766666666654310 000 011222211 1245999999999999553
No 407
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=48.74 E-value=8.5 Score=35.05 Aligned_cols=30 Identities=17% Similarity=0.077 Sum_probs=21.2
Q ss_pred cHHHHHHHHHHhcCCCEEEEecCCchHhHHH
Q 007814 167 TPIQVQGLPVVLSGRDMIGIAFTGSGKTLVF 197 (588)
Q Consensus 167 ~~~Q~~~i~~il~g~dvii~a~TGsGKTl~~ 197 (588)
++.++.. ..+..|.-+++++++|||||...
T Consensus 13 ~~~~r~~-~~~~~~~~i~~~G~~GsGKsT~~ 42 (211)
T 1m7g_A 13 TRSERTE-LRNQRGLTIWLTGLSASGKSTLA 42 (211)
T ss_dssp CHHHHHH-HHTSSCEEEEEECSTTSSHHHHH
T ss_pred CHHHhhc-ccCCCCCEEEEECCCCCCHHHHH
Confidence 4555555 33446777889999999999654
No 408
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=48.61 E-value=7.4 Score=34.48 Aligned_cols=16 Identities=25% Similarity=0.245 Sum_probs=12.7
Q ss_pred CEEEEecCCchHhHHH
Q 007814 182 DMIGIAFTGSGKTLVF 197 (588)
Q Consensus 182 dvii~a~TGsGKTl~~ 197 (588)
-+.+++++|||||...
T Consensus 4 ~v~IvG~SGsGKSTL~ 19 (171)
T 2f1r_A 4 ILSIVGTSDSGKTTLI 19 (171)
T ss_dssp EEEEEESCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 3567899999999554
No 409
>3hix_A ALR3790 protein; rhodanese, rhodanese_3, Q8YQN0, Q8YQN0_anAsp, NSR437I, NESG, structural genomics, PSI-2, protein structure initiative; 1.92A {Anabaena SP} PDB: 3k9r_A
Probab=48.60 E-value=9.6 Score=30.47 Aligned_cols=37 Identities=14% Similarity=0.285 Sum_probs=31.4
Q ss_pred CCCCEEEEeCccccHHHHHHHHHHcCCc-EEEEeCCCC
Q 007814 393 TPPPVLIFCENKADVDDIHEYLLLKGVE-AVAVHGGKD 429 (588)
Q Consensus 393 ~~~~viIF~~s~~~~~~l~~~L~~~g~~-~~~ihg~~~ 429 (588)
...+++|||.+-..+...+..|...|+. +..+.||+.
T Consensus 51 ~~~~ivvyc~~g~rs~~a~~~L~~~G~~~v~~l~GG~~ 88 (106)
T 3hix_A 51 KSRDIYVYGAGDEQTSQAVNLLRSAGFEHVSELKGGLA 88 (106)
T ss_dssp TTSCEEEECSSHHHHHHHHHHHHHTTCSCEEECTTHHH
T ss_pred CCCeEEEEECCCChHHHHHHHHHHcCCcCEEEecCCHH
Confidence 4568999999988899999999999995 778888753
No 410
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=48.56 E-value=6.5 Score=38.10 Aligned_cols=17 Identities=29% Similarity=0.210 Sum_probs=14.0
Q ss_pred CCEEEEecCCchHhHHH
Q 007814 181 RDMIGIAFTGSGKTLVF 197 (588)
Q Consensus 181 ~dvii~a~TGsGKTl~~ 197 (588)
.-++++||+|||||...
T Consensus 34 ~livl~G~sGsGKSTla 50 (287)
T 1gvn_B 34 TAFLLGGQPGSGKTSLR 50 (287)
T ss_dssp EEEEEECCTTSCTHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 45788999999999654
No 411
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=48.44 E-value=8.8 Score=34.26 Aligned_cols=19 Identities=26% Similarity=0.165 Sum_probs=15.6
Q ss_pred cCCCEEEEecCCchHhHHH
Q 007814 179 SGRDMIGIAFTGSGKTLVF 197 (588)
Q Consensus 179 ~g~dvii~a~TGsGKTl~~ 197 (588)
.+.-+++++++|||||...
T Consensus 11 ~~~~I~l~G~~GsGKsT~a 29 (199)
T 2bwj_A 11 KCKIIFIIGGPGSGKGTQC 29 (199)
T ss_dssp HSCEEEEEECTTSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 4567889999999999654
No 412
>3bfn_A Kinesin-like protein KIF22; limited proteolysis, structural genomics consortium domain, ADP, SGC, ATP-binding, DNA-binding, microtubule, MO protein; HET: ADP; 2.30A {Homo sapiens}
Probab=48.41 E-value=8.9 Score=38.86 Aligned_cols=22 Identities=32% Similarity=0.425 Sum_probs=16.2
Q ss_pred HHHhcCCCEE--EEecCCchHhHH
Q 007814 175 PVVLSGRDMI--GIAFTGSGKTLV 196 (588)
Q Consensus 175 ~~il~g~dvi--i~a~TGsGKTl~ 196 (588)
..++.|.|+. ..+.||||||..
T Consensus 92 ~~~l~G~N~tifAYGqTGSGKTyT 115 (388)
T 3bfn_A 92 RHLLEGQNASVLAYGPTGAGKTHT 115 (388)
T ss_dssp HHHTTTCCEEEEEESCTTSSHHHH
T ss_pred HHhhcCceeeEeeecCCCCCCCeE
Confidence 3456887754 458999999955
No 413
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=48.40 E-value=11 Score=34.32 Aligned_cols=16 Identities=44% Similarity=0.492 Sum_probs=13.3
Q ss_pred EEEEecCCchHhHHHH
Q 007814 183 MIGIAFTGSGKTLVFV 198 (588)
Q Consensus 183 vii~a~TGsGKTl~~~ 198 (588)
.++.|+.|||||....
T Consensus 8 ~l~tG~pGsGKT~~a~ 23 (199)
T 2r2a_A 8 CLITGTPGSGKTLKMV 23 (199)
T ss_dssp EEEECCTTSSHHHHHH
T ss_pred EEEEeCCCCCHHHHHH
Confidence 5788999999997643
No 414
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=48.06 E-value=8.2 Score=35.62 Aligned_cols=18 Identities=28% Similarity=0.161 Sum_probs=15.0
Q ss_pred CCCEEEEecCCchHhHHH
Q 007814 180 GRDMIGIAFTGSGKTLVF 197 (588)
Q Consensus 180 g~dvii~a~TGsGKTl~~ 197 (588)
+..+++.|++|||||...
T Consensus 7 ~~~I~l~G~~GsGKsT~a 24 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVS 24 (227)
T ss_dssp CCEEEEEECTTSSHHHHH
T ss_pred CcEEEEECCCCCCHHHHH
Confidence 456899999999999664
No 415
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=47.99 E-value=8 Score=34.26 Aligned_cols=16 Identities=31% Similarity=0.322 Sum_probs=13.2
Q ss_pred CEEEEecCCchHhHHH
Q 007814 182 DMIGIAFTGSGKTLVF 197 (588)
Q Consensus 182 dvii~a~TGsGKTl~~ 197 (588)
-+++.|+.|||||...
T Consensus 3 ~I~i~G~~GsGKsT~~ 18 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVL 18 (194)
T ss_dssp EEEEEECTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 3688899999999654
No 416
>3nhv_A BH2092 protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 2.50A {Bacillus halodurans} PDB: 3o3w_A
Probab=47.94 E-value=12 Score=32.01 Aligned_cols=36 Identities=11% Similarity=0.254 Sum_probs=31.4
Q ss_pred CCCEEEEeCcc--ccHHHHHHHHHHcCCcEEEEeCCCC
Q 007814 394 PPPVLIFCENK--ADVDDIHEYLLLKGVEAVAVHGGKD 429 (588)
Q Consensus 394 ~~~viIF~~s~--~~~~~l~~~L~~~g~~~~~ihg~~~ 429 (588)
..+++|||.+- ..+...+..|...|+++..+.||+.
T Consensus 72 ~~~ivvyC~~g~~~rs~~aa~~L~~~G~~v~~l~GG~~ 109 (144)
T 3nhv_A 72 EKVIITYCWGPACNGATKAAAKFAQLGFRVKELIGGIE 109 (144)
T ss_dssp TSEEEEECSCTTCCHHHHHHHHHHHTTCEEEEEESHHH
T ss_pred CCeEEEEECCCCccHHHHHHHHHHHCCCeEEEeCCcHH
Confidence 45899999987 6889999999999999999999853
No 417
>2k0z_A Uncharacterized protein HP1203; A/B domain, structural genomics, unknown function, PSI-2, PR structure initiative; NMR {Helicobacter pylori}
Probab=47.92 E-value=17 Score=29.13 Aligned_cols=38 Identities=16% Similarity=0.178 Sum_probs=32.5
Q ss_pred cCCCCEEEEeCccccHHHHHHHHHHcCCcEEEEeCCCC
Q 007814 392 KTPPPVLIFCENKADVDDIHEYLLLKGVEAVAVHGGKD 429 (588)
Q Consensus 392 ~~~~~viIF~~s~~~~~~l~~~L~~~g~~~~~ihg~~~ 429 (588)
....+++|||.+-..+...+..|...|+....+.||+.
T Consensus 54 ~~~~~ivvyC~~G~rs~~aa~~L~~~G~~~~~l~GG~~ 91 (110)
T 2k0z_A 54 HKDKKVLLHCRAGRRALDAAKSMHELGYTPYYLEGNVY 91 (110)
T ss_dssp CSSSCEEEECSSSHHHHHHHHHHHHTTCCCEEEESCGG
T ss_pred CCCCEEEEEeCCCchHHHHHHHHHHCCCCEEEecCCHH
Confidence 34578999999999999999999999997677889864
No 418
>1gmx_A GLPE protein; transferase, rhodanese, sulfurtransferase, glycerol metabolism; 1.1A {Escherichia coli} SCOP: c.46.1.3 PDB: 1gn0_A
Probab=47.88 E-value=12 Score=29.89 Aligned_cols=37 Identities=24% Similarity=0.583 Sum_probs=32.0
Q ss_pred CCCCEEEEeCccccHHHHHHHHHHcCCc-EEEEeCCCC
Q 007814 393 TPPPVLIFCENKADVDDIHEYLLLKGVE-AVAVHGGKD 429 (588)
Q Consensus 393 ~~~~viIF~~s~~~~~~l~~~L~~~g~~-~~~ihg~~~ 429 (588)
...+++|||.+-..+...+..|...|+. +..+.||+.
T Consensus 57 ~~~~ivvyc~~g~rs~~a~~~L~~~G~~~v~~l~GG~~ 94 (108)
T 1gmx_A 57 FDTPVMVMCYHGNSSKGAAQYLLQQGYDVVYSIDGGFE 94 (108)
T ss_dssp TTSCEEEECSSSSHHHHHHHHHHHHTCSSEEEETTHHH
T ss_pred CCCCEEEEcCCCchHHHHHHHHHHcCCceEEEecCCHH
Confidence 4568999999988999999999999995 778888864
No 419
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=47.85 E-value=7.6 Score=39.14 Aligned_cols=16 Identities=38% Similarity=0.453 Sum_probs=13.1
Q ss_pred CEEEEecCCchHhHHH
Q 007814 182 DMIGIAFTGSGKTLVF 197 (588)
Q Consensus 182 dvii~a~TGsGKTl~~ 197 (588)
=.++.|+||+|||.++
T Consensus 27 l~vi~G~NGaGKT~il 42 (371)
T 3auy_A 27 IVAIIGENGSGKSSIF 42 (371)
T ss_dssp EEEEEECTTSSHHHHH
T ss_pred eEEEECCCCCCHHHHH
Confidence 4578899999999663
No 420
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=47.78 E-value=19 Score=38.44 Aligned_cols=24 Identities=21% Similarity=0.216 Sum_probs=17.9
Q ss_pred CCCEEEEecCCchHhHHHHHHHHH
Q 007814 180 GRDMIGIAFTGSGKTLVFVLPMIM 203 (588)
Q Consensus 180 g~dvii~a~TGsGKTl~~~lp~l~ 203 (588)
..++++.+.||||||.+....++.
T Consensus 214 ~pHlLIaG~TGSGKS~~L~tlI~s 237 (574)
T 2iut_A 214 MPHLLVAGTTGSGKSVGVNAMLLS 237 (574)
T ss_dssp SCCEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeeEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999664433333
No 421
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=47.72 E-value=7.2 Score=34.37 Aligned_cols=19 Identities=32% Similarity=0.392 Sum_probs=15.2
Q ss_pred cCCCEEEEecCCchHhHHH
Q 007814 179 SGRDMIGIAFTGSGKTLVF 197 (588)
Q Consensus 179 ~g~dvii~a~TGsGKTl~~ 197 (588)
.|.-+++.++.|||||.+.
T Consensus 4 ~g~~i~l~G~~GsGKST~~ 22 (179)
T 2pez_A 4 RGCTVWLTGLSGAGKTTVS 22 (179)
T ss_dssp CCEEEEEECCTTSSHHHHH
T ss_pred CCcEEEEECCCCCCHHHHH
Confidence 4566788999999999654
No 422
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=47.65 E-value=12 Score=34.33 Aligned_cols=19 Identities=16% Similarity=-0.020 Sum_probs=15.5
Q ss_pred CCCEEEEecCCchHhHHHH
Q 007814 180 GRDMIGIAFTGSGKTLVFV 198 (588)
Q Consensus 180 g~dvii~a~TGsGKTl~~~ 198 (588)
+..+++.|++|||||...-
T Consensus 5 ~~~I~l~G~~GsGKsT~~~ 23 (222)
T 1zak_A 5 PLKVMISGAPASGKGTQCE 23 (222)
T ss_dssp SCCEEEEESTTSSHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHH
Confidence 3578999999999996643
No 423
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=47.56 E-value=9.8 Score=41.77 Aligned_cols=77 Identities=14% Similarity=0.236 Sum_probs=50.4
Q ss_pred CCEEEEEcCCHHHHHHHHHHHHHHhhcccccCCCCceEEEEEcC--------cchHHHHHHHh----cCCcEEEeChHHH
Q 007814 219 GPFCLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGG--------VDMRSQLEVVK----RGVHIVVATPGRL 286 (588)
Q Consensus 219 ~~~~Lil~Ptr~La~Q~~~~~~~~~~~~~~~~~~~i~~~~~~gg--------~~~~~~~~~l~----~~~~IvV~Tp~~L 286 (588)
+.++||.|+++..+..+.+.+.... . ....++++..++|+ .+..++...+. ...+|+|||
T Consensus 400 ~~~~IVF~~s~~~~~~l~~~L~~~~-~---l~~~g~~~~~lhg~~~~~~~~~~~~~eR~~~~~~F~~g~~~VLVaT---- 471 (699)
T 4gl2_A 400 SARGIIFTKTRQSAYALSQWITENE-K---FAEVGVKAHHLIGAGHSSEFKPMTQNEQKEVISKFRTGKINLLIAT---- 471 (699)
T ss_dssp CCCEEEECSCHHHHHHHHHHHHSSC-S---CC-----CEECCCSCCCTTCCCCCHHHHHHHHHHHCC---CCSEEE----
T ss_pred CCcEEEEECcHHHHHHHHHHHHhCc-c---ccccCcceEEEECCCCccCCCCCCHHHHHHHHHHHhcCCCcEEEEc----
Confidence 6789999999999999888777531 0 11126788888988 66665554443 247899999
Q ss_pred HHHHHcccCCCCCcceeEe
Q 007814 287 KDMLAKKKMNLDNCRYLTL 305 (588)
Q Consensus 287 ~~~l~~~~~~l~~~~~lVi 305 (588)
+.+ ..++++..+++||.
T Consensus 472 -~~~-~~GIDip~v~~VI~ 488 (699)
T 4gl2_A 472 -TVA-EEGLDIKECNIVIR 488 (699)
T ss_dssp -CSC-CTTSCCCSCCCCEE
T ss_pred -ccc-ccCCccccCCEEEE
Confidence 333 45778888998873
No 424
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=47.34 E-value=8 Score=35.24 Aligned_cols=17 Identities=18% Similarity=0.352 Sum_probs=13.9
Q ss_pred CEEEEecCCchHhHHHH
Q 007814 182 DMIGIAFTGSGKTLVFV 198 (588)
Q Consensus 182 dvii~a~TGsGKTl~~~ 198 (588)
.+++.|+.|||||.+.-
T Consensus 2 ~I~l~G~~GsGKsT~a~ 18 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAE 18 (216)
T ss_dssp EEEEECSTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 47889999999996643
No 425
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=47.24 E-value=30 Score=33.38 Aligned_cols=69 Identities=17% Similarity=0.185 Sum_probs=50.4
Q ss_pred CCCEEEEeCccccHHHHHHHHHHc----CCcEEEEeCCCCHHHHHHHHHHHhcCCcEEEEEcCcc-----c-cCCCCCCc
Q 007814 394 PPPVLIFCENKADVDDIHEYLLLK----GVEAVAVHGGKDQEEREYAISSFKAGKKDVLVATDVA-----S-KGLDFPDI 463 (588)
Q Consensus 394 ~~~viIF~~s~~~~~~l~~~L~~~----g~~~~~ihg~~~~~~R~~~~~~f~~g~~~vLVaT~~~-----~-~GlDip~v 463 (588)
+.++||.++++.-+..+++.+... +..+..+||+.+..+.... +. ..+|+|+|.-. . ..+++..+
T Consensus 56 ~~~~liv~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~--~~~i~v~T~~~l~~~~~~~~~~~~~~ 130 (337)
T 2z0m_A 56 GMKSLVVTPTRELTRQVASHIRDIGRYMDTKVAEVYGGMPYKAQINR---VR--NADIVVATPGRLLDLWSKGVIDLSSF 130 (337)
T ss_dssp TCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECTTSCHHHHHHH---HT--TCSEEEECHHHHHHHHHTTSCCGGGC
T ss_pred cCCEEEEeCCHHHHHHHHHHHHHHhhhcCCcEEEEECCcchHHHHhh---cC--CCCEEEECHHHHHHHHHcCCcchhhC
Confidence 678999999999999999888753 5788999999887654433 22 37899999521 1 23456667
Q ss_pred ceEE
Q 007814 464 QHVI 467 (588)
Q Consensus 464 ~~VI 467 (588)
++||
T Consensus 131 ~~iV 134 (337)
T 2z0m_A 131 EIVI 134 (337)
T ss_dssp SEEE
T ss_pred cEEE
Confidence 7766
No 426
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=47.16 E-value=10 Score=34.79 Aligned_cols=18 Identities=17% Similarity=0.047 Sum_probs=14.4
Q ss_pred CCEEEEecCCchHhHHHH
Q 007814 181 RDMIGIAFTGSGKTLVFV 198 (588)
Q Consensus 181 ~dvii~a~TGsGKTl~~~ 198 (588)
..+.+.+++|||||.+.-
T Consensus 6 ~~i~i~G~~GsGKSTl~~ 23 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCK 23 (227)
T ss_dssp CEEEEECCTTSSHHHHHH
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 457888999999996643
No 427
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=47.03 E-value=8.3 Score=35.07 Aligned_cols=18 Identities=22% Similarity=0.195 Sum_probs=14.1
Q ss_pred cCCCEEEEecCCchHhHH
Q 007814 179 SGRDMIGIAFTGSGKTLV 196 (588)
Q Consensus 179 ~g~dvii~a~TGsGKTl~ 196 (588)
.|.-+.+++|+|||||..
T Consensus 21 ~g~~v~I~G~sGsGKSTl 38 (208)
T 3c8u_A 21 GRQLVALSGAPGSGKSTL 38 (208)
T ss_dssp SCEEEEEECCTTSCTHHH
T ss_pred CCeEEEEECCCCCCHHHH
Confidence 355677889999999954
No 428
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=46.91 E-value=9.5 Score=34.93 Aligned_cols=19 Identities=26% Similarity=0.071 Sum_probs=15.6
Q ss_pred cCCCEEEEecCCchHhHHH
Q 007814 179 SGRDMIGIAFTGSGKTLVF 197 (588)
Q Consensus 179 ~g~dvii~a~TGsGKTl~~ 197 (588)
.|.-+.+++|+|+|||...
T Consensus 24 ~G~~~~l~G~nGsGKSTll 42 (231)
T 4a74_A 24 TQAITEVFGEFGSGKTQLA 42 (231)
T ss_dssp SSEEEEEEESTTSSHHHHH
T ss_pred CCcEEEEECCCCCCHHHHH
Confidence 5667888999999999554
No 429
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=46.78 E-value=8.6 Score=34.66 Aligned_cols=16 Identities=25% Similarity=0.154 Sum_probs=13.2
Q ss_pred CEEEEecCCchHhHHH
Q 007814 182 DMIGIAFTGSGKTLVF 197 (588)
Q Consensus 182 dvii~a~TGsGKTl~~ 197 (588)
.+.+++++|||||.+.
T Consensus 3 ~i~i~G~~GsGKSTl~ 18 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVA 18 (204)
T ss_dssp EEEEEECTTSSHHHHH
T ss_pred EEEEECCCCcCHHHHH
Confidence 4678899999999654
No 430
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=46.74 E-value=9.1 Score=33.28 Aligned_cols=17 Identities=24% Similarity=0.239 Sum_probs=14.2
Q ss_pred CCEEEEecCCchHhHHH
Q 007814 181 RDMIGIAFTGSGKTLVF 197 (588)
Q Consensus 181 ~dvii~a~TGsGKTl~~ 197 (588)
+-+++.++.|||||.+.
T Consensus 3 ~~I~l~G~~GsGKsT~a 19 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVG 19 (173)
T ss_dssp CCEEEESCTTSSHHHHH
T ss_pred ceEEEECCCCCCHHHHH
Confidence 35889999999999664
No 431
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12}
Probab=46.73 E-value=32 Score=39.51 Aligned_cols=77 Identities=10% Similarity=0.177 Sum_probs=57.3
Q ss_pred CCCEEEEEcCCHHHHHHHHHHHHHHhhcccccCCCCceEEEEEcCcchHHHH---HHHhcC---CcEEEeChHHHHHHHH
Q 007814 218 EGPFCLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQL---EVVKRG---VHIVVATPGRLKDMLA 291 (588)
Q Consensus 218 ~~~~~Lil~Ptr~La~Q~~~~~~~~~~~~~~~~~~~i~~~~~~gg~~~~~~~---~~l~~~---~~IvV~Tp~~L~~~l~ 291 (588)
.+.++||.|+++.-+..+.+.+.... ++++..++|+.+..++. ..+..+ ++|+|+| +.+
T Consensus 502 ~~~k~iVF~~~~~~~~~l~~~L~~~~---------g~~~~~lhG~~~~~~R~~~l~~F~~g~~~~~vLvaT-----~v~- 566 (968)
T 3dmq_A 502 RSQKVLVICAKAATALQLEQVLRERE---------GIRAAVFHEGMSIIERDRAAAWFAEEDTGAQVLLCS-----EIG- 566 (968)
T ss_dssp SSSCCCEECSSTHHHHHHHHHHHTTT---------CCCEEEECTTSCTTHHHHHHHHHHSTTSSCEEEECS-----CCT-
T ss_pred CCCCEEEEeCcHHHHHHHHHHHHHHc---------CCcEEEEeCCCCHHHHHHHHHHHhCCCCcccEEEec-----chh-
Confidence 46689999999999888777776421 78899999997765443 334444 8999999 333
Q ss_pred cccCCCCCcceeEecCcc
Q 007814 292 KKKMNLDNCRYLTLDEAD 309 (588)
Q Consensus 292 ~~~~~l~~~~~lViDEah 309 (588)
..++++..+.+||+-+.+
T Consensus 567 ~~GlDl~~~~~VI~~d~p 584 (968)
T 3dmq_A 567 SEGRNFQFASHMVMFDLP 584 (968)
T ss_dssp TCSSCCTTCCEEECSSCC
T ss_pred hcCCCcccCcEEEEecCC
Confidence 457888889999987665
No 432
>2rep_A Kinesin-like protein KIFC1; structural genomics consortium, motor domain, ADP, binding, cell cycle, cell division, endosome, microtubule; HET: ADP; 2.60A {Homo sapiens}
Probab=46.37 E-value=11 Score=38.11 Aligned_cols=24 Identities=33% Similarity=0.331 Sum_probs=18.2
Q ss_pred HHHHHhcCCCEEE--EecCCchHhHH
Q 007814 173 GLPVVLSGRDMIG--IAFTGSGKTLV 196 (588)
Q Consensus 173 ~i~~il~g~dvii--~a~TGsGKTl~ 196 (588)
.+..++.|-|+.+ -+.||||||..
T Consensus 107 lv~~~l~G~N~tifAYGqTGSGKTyT 132 (376)
T 2rep_A 107 LVQSALDGYPVCIFAYGQTGSGKTFT 132 (376)
T ss_dssp HHHGGGGTCCEEEEEECSTTSSHHHH
T ss_pred HHHHhcCCCceEEEEeCCCCCCCceE
Confidence 5666778887544 48999999955
No 433
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=46.26 E-value=11 Score=34.37 Aligned_cols=18 Identities=28% Similarity=0.239 Sum_probs=15.0
Q ss_pred CCCEEEEecCCchHhHHH
Q 007814 180 GRDMIGIAFTGSGKTLVF 197 (588)
Q Consensus 180 g~dvii~a~TGsGKTl~~ 197 (588)
+..+++.+++|||||...
T Consensus 4 ~~~I~l~G~~GsGKsT~a 21 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQA 21 (220)
T ss_dssp CCEEEEECCTTSSHHHHH
T ss_pred CcEEEEECCCCCCHHHHH
Confidence 456889999999999664
No 434
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=46.14 E-value=9.1 Score=35.82 Aligned_cols=18 Identities=28% Similarity=0.355 Sum_probs=15.2
Q ss_pred cCCCEEEEecCCchHhHH
Q 007814 179 SGRDMIGIAFTGSGKTLV 196 (588)
Q Consensus 179 ~g~dvii~a~TGsGKTl~ 196 (588)
.|.-+.+++|+|||||..
T Consensus 30 ~Ge~~~iiG~nGsGKSTL 47 (235)
T 3tif_A 30 EGEFVSIMGPSGSGKSTM 47 (235)
T ss_dssp TTCEEEEECSTTSSHHHH
T ss_pred CCCEEEEECCCCCcHHHH
Confidence 567788999999999954
No 435
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=46.06 E-value=10 Score=34.35 Aligned_cols=18 Identities=28% Similarity=-0.071 Sum_probs=13.9
Q ss_pred CCCEEEEecCCchHhHHH
Q 007814 180 GRDMIGIAFTGSGKTLVF 197 (588)
Q Consensus 180 g~dvii~a~TGsGKTl~~ 197 (588)
|.-+.+.+|+|||||...
T Consensus 6 ~~~i~i~G~~GsGKSTl~ 23 (211)
T 3asz_A 6 PFVIGIAGGTASGKTTLA 23 (211)
T ss_dssp CEEEEEEESTTSSHHHHH
T ss_pred cEEEEEECCCCCCHHHHH
Confidence 445678899999999654
No 436
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=45.97 E-value=7.5 Score=35.12 Aligned_cols=19 Identities=26% Similarity=0.181 Sum_probs=15.3
Q ss_pred cCCCEEEEecCCchHhHHH
Q 007814 179 SGRDMIGIAFTGSGKTLVF 197 (588)
Q Consensus 179 ~g~dvii~a~TGsGKTl~~ 197 (588)
.+.-+++.|+.|||||...
T Consensus 3 ~~~~I~i~G~~GsGKsT~~ 21 (213)
T 2plr_A 3 KGVLIAFEGIDGSGKSSQA 21 (213)
T ss_dssp CCEEEEEECCTTSSHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHH
Confidence 4556888999999999654
No 437
>2owm_A Nckin3-434, related to kinesin-like protein KIF1C; motor domain, ADP, NECK linker, motor PR; HET: ADP; 3.25A {Neurospora crassa}
Probab=45.96 E-value=13 Score=38.39 Aligned_cols=25 Identities=28% Similarity=0.316 Sum_probs=17.6
Q ss_pred HHHHHhcCCCE--EEEecCCchHhHHH
Q 007814 173 GLPVVLSGRDM--IGIAFTGSGKTLVF 197 (588)
Q Consensus 173 ~i~~il~g~dv--ii~a~TGsGKTl~~ 197 (588)
.+..++.|-|+ +..+.||||||...
T Consensus 128 lv~~~l~GyN~tIfAYGQTGSGKTyTM 154 (443)
T 2owm_A 128 FLDHNFEGYHTCIFAYGQTGSGKSYTM 154 (443)
T ss_dssp HHHHHHTTCCEEEEEESSTTSSHHHHH
T ss_pred HHHHhhcCCceEEEEeCCCCCCCCEEe
Confidence 34455788875 44489999999653
No 438
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=45.94 E-value=12 Score=33.57 Aligned_cols=42 Identities=17% Similarity=0.211 Sum_probs=24.9
Q ss_pred CCCcceeEecCcccccc--cCcHHHHHHHHHhhhhcceeEEEecccc
Q 007814 297 LDNCRYLTLDEADRLVD--LGFEDDIREVFDHFKAQRQTLLFSATMP 341 (588)
Q Consensus 297 l~~~~~lViDEah~l~~--~~~~~~i~~i~~~~~~~~q~l~~SAT~~ 341 (588)
....+++|+||+..+.. ..|...+..++. ....+|+-|.|.+
T Consensus 103 ~~~~dvlilDE~g~~~~~~~~~~~~l~~~l~---~~~~~ilgti~vs 146 (189)
T 2i3b_A 103 GPGQRVCVIDEIGKMELFSQLFIQAVRQTLS---TPGTIILGTIPVP 146 (189)
T ss_dssp SSCCCCEEECCCSTTTTTCSHHHHHHHHHHH---CSSCCEEEECCCC
T ss_pred ccCCCEEEEeCCCccccccHHHHHHHHHHHh---CCCcEEEEEeecC
Confidence 56678999999988743 334444444443 2323454466753
No 439
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=45.94 E-value=16 Score=39.48 Aligned_cols=23 Identities=22% Similarity=0.306 Sum_probs=19.0
Q ss_pred HHHhcCCCEEEEecCCchHhHHH
Q 007814 175 PVVLSGRDMIGIAFTGSGKTLVF 197 (588)
Q Consensus 175 ~~il~g~dvii~a~TGsGKTl~~ 197 (588)
..+..|..+++.+|+|+|||..+
T Consensus 55 ~~i~~g~~vll~Gp~GtGKTtla 77 (604)
T 3k1j_A 55 TAANQKRHVLLIGEPGTGKSMLG 77 (604)
T ss_dssp HHHHTTCCEEEECCTTSSHHHHH
T ss_pred ccccCCCEEEEEeCCCCCHHHHH
Confidence 34558899999999999999654
No 440
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae}
Probab=45.83 E-value=81 Score=35.18 Aligned_cols=76 Identities=12% Similarity=0.064 Sum_probs=52.9
Q ss_pred CCCEEEEEcCCHHHHHHHHHHHHHHhhcccccCCCCceEEEEEcCcchHHHHHHHhc----CCc---EEEeChHHHHHHH
Q 007814 218 EGPFCLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVKR----GVH---IVVATPGRLKDML 290 (588)
Q Consensus 218 ~~~~~Lil~Ptr~La~Q~~~~~~~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~l~~----~~~---IvV~Tp~~L~~~l 290 (588)
.+.++||.+..+..+.-+.+.+... ++.+..++|+++..++...+.. ... ++++| ...
T Consensus 571 ~g~kvLIFsq~~~~ld~L~~~L~~~----------g~~~~~i~G~~~~~eR~~~i~~F~~~~~~~~v~LlSt-----~ag 635 (800)
T 3mwy_W 571 DGHRVLIFSQMVRMLDILGDYLSIK----------GINFQRLDGTVPSAQRRISIDHFNSPDSNDFVFLLST-----RAG 635 (800)
T ss_dssp TTCCEEEEESCHHHHHHHHHHHHHH----------TCCCEEESTTSCHHHHHHHHHTTSSTTCSCCCEEEEH-----HHH
T ss_pred CCCeEEEEechHHHHHHHHHHHHhC----------CCCEEEEeCCCCHHHHHHHHHHhhCCCCCceEEEEec-----ccc
Confidence 4678999999998877777666554 6788899999888777665543 122 45555 333
Q ss_pred HcccCCCCCcceeEecCcc
Q 007814 291 AKKKMNLDNCRYLTLDEAD 309 (588)
Q Consensus 291 ~~~~~~l~~~~~lViDEah 309 (588)
..++++..++.||+=+.+
T Consensus 636 -g~GlNL~~a~~VI~~D~~ 653 (800)
T 3mwy_W 636 -GLGINLMTADTVVIFDSD 653 (800)
T ss_dssp -TTTCCCTTCCEEEESSCC
T ss_pred -cCCCCccccceEEEecCC
Confidence 557888888887764443
No 441
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=45.81 E-value=8.7 Score=35.01 Aligned_cols=16 Identities=19% Similarity=0.360 Sum_probs=13.6
Q ss_pred CEEEEecCCchHhHHH
Q 007814 182 DMIGIAFTGSGKTLVF 197 (588)
Q Consensus 182 dvii~a~TGsGKTl~~ 197 (588)
.+++.|+.|||||.+.
T Consensus 2 ~I~l~G~~GsGKsT~a 17 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQG 17 (216)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4788999999999664
No 442
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=45.70 E-value=11 Score=36.79 Aligned_cols=18 Identities=17% Similarity=0.215 Sum_probs=15.7
Q ss_pred cCCCEEEEecCCchHhHH
Q 007814 179 SGRDMIGIAFTGSGKTLV 196 (588)
Q Consensus 179 ~g~dvii~a~TGsGKTl~ 196 (588)
.|.-+.+++|+|||||..
T Consensus 125 ~Ge~vaIvGpsGsGKSTL 142 (305)
T 2v9p_A 125 KKNCLAFIGPPNTGKSML 142 (305)
T ss_dssp TCSEEEEECSSSSSHHHH
T ss_pred CCCEEEEECCCCCcHHHH
Confidence 678888999999999954
No 443
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=45.66 E-value=8.8 Score=34.69 Aligned_cols=15 Identities=33% Similarity=0.166 Sum_probs=12.6
Q ss_pred EEEEecCCchHhHHH
Q 007814 183 MIGIAFTGSGKTLVF 197 (588)
Q Consensus 183 vii~a~TGsGKTl~~ 197 (588)
+.+.|+.|||||.+.
T Consensus 5 i~l~G~~GsGKST~~ 19 (206)
T 1jjv_A 5 VGLTGGIGSGKTTIA 19 (206)
T ss_dssp EEEECSTTSCHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 678899999999664
No 444
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=45.46 E-value=10 Score=39.17 Aligned_cols=53 Identities=21% Similarity=0.172 Sum_probs=30.6
Q ss_pred CCCCCCCCCCCHHHHHHHHHCCC---CCCcHHHHHHHHHHhcCCCEEEEecCCchHhHHH
Q 007814 141 PIKNFKDMRFPEPILKKLKAKGI---VQPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVF 197 (588)
Q Consensus 141 p~~~f~~~~l~~~l~~~l~~~g~---~~p~~~Q~~~i~~il~g~dvii~a~TGsGKTl~~ 197 (588)
|-.+|+++.-...+.+.|...-. ..|.-++ ......+.+++.||+|+|||+.+
T Consensus 129 ~~~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~----~~~~~~~~vLL~GppGtGKT~lA 184 (444)
T 2zan_A 129 PNVKWSDVAGLEGAKEALKEAVILPIKFPHLFT----GKRTPWRGILLFGPPGTGKSYLA 184 (444)
T ss_dssp CCCCGGGSCSCHHHHHHHHHHHTHHHHCTTTTS----GGGCCCSEEEEECSTTSSHHHHH
T ss_pred CCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHhh----ccCCCCceEEEECCCCCCHHHHH
Confidence 44578887666666666654310 0010000 00123478999999999999664
No 445
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=45.21 E-value=12 Score=33.06 Aligned_cols=16 Identities=25% Similarity=0.179 Sum_probs=13.5
Q ss_pred CEEEEecCCchHhHHH
Q 007814 182 DMIGIAFTGSGKTLVF 197 (588)
Q Consensus 182 dvii~a~TGsGKTl~~ 197 (588)
-+++.++.|||||.+.
T Consensus 8 ~I~l~G~~GsGKsT~~ 23 (194)
T 1qf9_A 8 VVFVLGGPGSGKGTQC 23 (194)
T ss_dssp EEEEEESTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4788899999999664
No 446
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=45.05 E-value=9.9 Score=34.19 Aligned_cols=18 Identities=17% Similarity=0.141 Sum_probs=14.7
Q ss_pred CCCEEEEecCCchHhHHH
Q 007814 180 GRDMIGIAFTGSGKTLVF 197 (588)
Q Consensus 180 g~dvii~a~TGsGKTl~~ 197 (588)
+.-+++.++.|||||...
T Consensus 20 ~~~I~l~G~~GsGKST~a 37 (201)
T 2cdn_A 20 HMRVLLLGPPGAGKGTQA 37 (201)
T ss_dssp CCEEEEECCTTSSHHHHH
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 346888999999999664
No 447
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=45.04 E-value=42 Score=35.84 Aligned_cols=84 Identities=10% Similarity=0.160 Sum_probs=54.2
Q ss_pred CCCEEEEEcCCHHHHHHHHHHHHHHhhcccccCCCCceEEEEEcCcch--HHHHHHHhcC-Cc---EEEeChHHHHHHHH
Q 007814 218 EGPFCLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDM--RSQLEVVKRG-VH---IVVATPGRLKDMLA 291 (588)
Q Consensus 218 ~~~~~Lil~Ptr~La~Q~~~~~~~~~~~~~~~~~~~i~~~~~~gg~~~--~~~~~~l~~~-~~---IvV~Tp~~L~~~l~ 291 (588)
.+.++||.|+++.-|..+++.+.+........ ..-.+..++|..+. ......+..+ .+ |+|+| +++
T Consensus 438 ~~~k~lVF~~~~~~a~~l~~~L~~~~~~~~~~--~~~~~~~i~g~~~~~r~~~l~~F~~~~~~~~~ilvtt-----~~l- 509 (590)
T 3h1t_A 438 RFAKTIVFCVDQEHADEMRRALNNLNSDLSRK--HPDYVARVTSEEGKIGKGHLSRFQELETSTPVILTTS-----QLL- 509 (590)
T ss_dssp TTSEEEEEESSHHHHHHHHHHHHHHTHHHHTT--CTTSEEECSSTTHHHHHHHHHHHHCTTCCCCCEEEES-----STT-
T ss_pred CCccEEEEECCHHHHHHHHHHHHHhhhhhhcc--CCCeEEEEeCCChHHHHHHHHHHhCCCCCCCEEEEEC-----Chh-
Confidence 46789999999999999999998875432111 12235566776543 2223444442 23 77777 444
Q ss_pred cccCCCCCcceeEecCcc
Q 007814 292 KKKMNLDNCRYLTLDEAD 309 (588)
Q Consensus 292 ~~~~~l~~~~~lViDEah 309 (588)
..++++..+.+||++..-
T Consensus 510 ~~GiDip~v~~Vi~~~~~ 527 (590)
T 3h1t_A 510 TTGVDAPTCKNVVLARVV 527 (590)
T ss_dssp TTTCCCTTEEEEEEESCC
T ss_pred hcCccchheeEEEEEecC
Confidence 346788899999986653
No 448
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A
Probab=45.03 E-value=26 Score=39.15 Aligned_cols=69 Identities=13% Similarity=0.075 Sum_probs=51.0
Q ss_pred CCCCEEEEeCccccHHHHHHHHH----HcCCcEEEEeCCCCHHHHHHHHHHHhcCCcEEEEEcCc-c-----c-------
Q 007814 393 TPPPVLIFCENKADVDDIHEYLL----LKGVEAVAVHGGKDQEEREYAISSFKAGKKDVLVATDV-A-----S------- 455 (588)
Q Consensus 393 ~~~~viIF~~s~~~~~~l~~~L~----~~g~~~~~ihg~~~~~~R~~~~~~f~~g~~~vLVaT~~-~-----~------- 455 (588)
.+..++|.++|+.-|...++.+. ..|+.+.++.|+++..+|.... ..+|+++|+- + .
T Consensus 123 ~g~~vlVltptreLA~qd~e~~~~l~~~lgl~v~~i~gg~~~~~r~~~~------~~dIv~gTpgrlgfD~L~D~m~~~~ 196 (844)
T 1tf5_A 123 TGKGVHVVTVNEYLASRDAEQMGKIFEFLGLTVGLNLNSMSKDEKREAY------AADITYSTNNELGFDYLRDNMVLYK 196 (844)
T ss_dssp TSSCEEEEESSHHHHHHHHHHHHHHHHHTTCCEEECCTTSCHHHHHHHH------HSSEEEEEHHHHHHHHHHHTTCSSG
T ss_pred cCCCEEEEeCCHHHHHHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHhc------CCCEEEECchhhhHHHHHHhhhcch
Confidence 45689999999998887777664 3599999999999987765542 3689999961 1 1
Q ss_pred cCCCCCCcceEE
Q 007814 456 KGLDFPDIQHVI 467 (588)
Q Consensus 456 ~GlDip~v~~VI 467 (588)
..+++..++++|
T Consensus 197 ~~l~lr~~~~lV 208 (844)
T 1tf5_A 197 EQMVQRPLHFAV 208 (844)
T ss_dssp GGCCCCCCCEEE
T ss_pred hhhcccCCCEEE
Confidence 135666777766
No 449
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=44.97 E-value=14 Score=33.60 Aligned_cols=24 Identities=25% Similarity=0.364 Sum_probs=16.2
Q ss_pred CEEEEecCCchHhHHHHHHHHHHHHh
Q 007814 182 DMIGIAFTGSGKTLVFVLPMIMIAMH 207 (588)
Q Consensus 182 dvii~a~TGsGKTl~~~lp~l~~~~~ 207 (588)
-.++++|+|+|||.++ -++..++.
T Consensus 25 ~~~I~G~NgsGKStil--~ai~~~l~ 48 (203)
T 3qks_A 25 INLIIGQNGSGKSSLL--DAILVGLY 48 (203)
T ss_dssp EEEEECCTTSSHHHHH--HHHHHHHH
T ss_pred eEEEEcCCCCCHHHHH--HHHHHHhc
Confidence 4578899999999553 34444443
No 450
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=44.83 E-value=6.8 Score=35.52 Aligned_cols=19 Identities=26% Similarity=0.001 Sum_probs=15.0
Q ss_pred cCCCEEEEecCCchHhHHH
Q 007814 179 SGRDMIGIAFTGSGKTLVF 197 (588)
Q Consensus 179 ~g~dvii~a~TGsGKTl~~ 197 (588)
.+.-+.+.+++|||||...
T Consensus 20 ~~~~i~i~G~~GsGKSTl~ 38 (207)
T 2qt1_A 20 KTFIIGISGVTNSGKTTLA 38 (207)
T ss_dssp CCEEEEEEESTTSSHHHHH
T ss_pred CCeEEEEECCCCCCHHHHH
Confidence 4556778899999999654
No 451
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=44.54 E-value=24 Score=31.16 Aligned_cols=15 Identities=33% Similarity=0.454 Sum_probs=12.3
Q ss_pred CEEEEecCCchHhHH
Q 007814 182 DMIGIAFTGSGKTLV 196 (588)
Q Consensus 182 dvii~a~TGsGKTl~ 196 (588)
-++++++.|||||..
T Consensus 8 ~i~i~G~sGsGKTTl 22 (174)
T 1np6_A 8 LLAFAAWSGTGKTTL 22 (174)
T ss_dssp EEEEECCTTSCHHHH
T ss_pred EEEEEeCCCCCHHHH
Confidence 467889999999954
No 452
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=44.50 E-value=19 Score=35.46 Aligned_cols=19 Identities=21% Similarity=0.281 Sum_probs=14.7
Q ss_pred cCCCEEEEecCCchHhHHH
Q 007814 179 SGRDMIGIAFTGSGKTLVF 197 (588)
Q Consensus 179 ~g~dvii~a~TGsGKTl~~ 197 (588)
.++-+.+++++|+|||...
T Consensus 104 ~~~vI~ivG~~G~GKTT~~ 122 (320)
T 1zu4_A 104 RLNIFMLVGVNGTGKTTSL 122 (320)
T ss_dssp SCEEEEEESSTTSSHHHHH
T ss_pred CCeEEEEECCCCCCHHHHH
Confidence 4556778899999999654
No 453
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=44.15 E-value=12 Score=35.17 Aligned_cols=19 Identities=16% Similarity=0.073 Sum_probs=15.5
Q ss_pred cCCCEEEEecCCchHhHHH
Q 007814 179 SGRDMIGIAFTGSGKTLVF 197 (588)
Q Consensus 179 ~g~dvii~a~TGsGKTl~~ 197 (588)
.|.-+.+.+|+|||||.+.
T Consensus 26 ~g~~I~I~G~~GsGKSTl~ 44 (252)
T 4e22_A 26 IAPVITVDGPSGAGKGTLC 44 (252)
T ss_dssp TSCEEEEECCTTSSHHHHH
T ss_pred CCcEEEEECCCCCCHHHHH
Confidence 4567888899999999664
No 454
>1ry6_A Internal kinesin; kinesin motor domain, nucleotide-free, transport protein; 1.60A {Plasmodium falciparum} SCOP: c.37.1.9
Probab=44.14 E-value=14 Score=37.08 Aligned_cols=18 Identities=39% Similarity=0.442 Sum_probs=14.4
Q ss_pred cCCCE--EEEecCCchHhHH
Q 007814 179 SGRDM--IGIAFTGSGKTLV 196 (588)
Q Consensus 179 ~g~dv--ii~a~TGsGKTl~ 196 (588)
.|.++ +..+.||||||..
T Consensus 82 ~G~n~tifAYGqTGSGKTyT 101 (360)
T 1ry6_A 82 NGCVCSCFAYGQTGSGKTYT 101 (360)
T ss_dssp HCCEEEEEEECCTTSSHHHH
T ss_pred CCceeEEEeeCCCCCCCCEE
Confidence 47774 6779999999965
No 455
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=44.06 E-value=11 Score=34.15 Aligned_cols=19 Identities=21% Similarity=0.212 Sum_probs=15.7
Q ss_pred cCCCEEEEecCCchHhHHH
Q 007814 179 SGRDMIGIAFTGSGKTLVF 197 (588)
Q Consensus 179 ~g~dvii~a~TGsGKTl~~ 197 (588)
.+.-+++.|+.|||||...
T Consensus 9 ~~~~I~l~G~~GsGKST~~ 27 (212)
T 2wwf_A 9 KGKFIVFEGLDRSGKSTQS 27 (212)
T ss_dssp CSCEEEEEESTTSSHHHHH
T ss_pred cCCEEEEEcCCCCCHHHHH
Confidence 4667889999999999664
No 456
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=43.86 E-value=15 Score=38.32 Aligned_cols=20 Identities=25% Similarity=0.260 Sum_probs=16.4
Q ss_pred cCCCEEEEecCCchHhHHHH
Q 007814 179 SGRDMIGIAFTGSGKTLVFV 198 (588)
Q Consensus 179 ~g~dvii~a~TGsGKTl~~~ 198 (588)
...++++.||+|+|||.+.-
T Consensus 200 ~~~~~LL~G~pG~GKT~la~ 219 (468)
T 3pxg_A 200 TKNNPVLIGEPGVGKTAIAE 219 (468)
T ss_dssp SSCEEEEESCTTTTTHHHHH
T ss_pred CCCCeEEECCCCCCHHHHHH
Confidence 44689999999999996643
No 457
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=43.83 E-value=22 Score=38.87 Aligned_cols=69 Identities=14% Similarity=0.224 Sum_probs=49.3
Q ss_pred CCEEEEeCccccHHHHHHHHHHc----CCcEEEEeCCCCHHHHHHHHHHHhcCCcEEEEEcCc-----cccC-C-CCCCc
Q 007814 395 PPVLIFCENKADVDDIHEYLLLK----GVEAVAVHGGKDQEEREYAISSFKAGKKDVLVATDV-----ASKG-L-DFPDI 463 (588)
Q Consensus 395 ~~viIF~~s~~~~~~l~~~L~~~----g~~~~~ihg~~~~~~R~~~~~~f~~g~~~vLVaT~~-----~~~G-l-Dip~v 463 (588)
+++||.++++.-+...++.+... ++.+..++|+.+...+...+ . ...+|+|+|.- +..| + ++.++
T Consensus 62 ~~~lvl~Pt~~L~~Q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~---~-~~~~Iiv~Tp~~L~~~l~~~~~~~l~~~ 137 (696)
T 2ykg_A 62 GKVVFFANQIPVYEQNKSVFSKYFERHGYRVTGISGATAENVPVEQI---V-ENNDIIILTPQILVNNLKKGTIPSLSIF 137 (696)
T ss_dssp CCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECSSSCSSSCHHHH---H-HTCSEEEECHHHHHHHHHTTSSCCGGGC
T ss_pred CeEEEEECCHHHHHHHHHHHHHHhccCCceEEEEeCCccccccHHHh---c-cCCCEEEECHHHHHHHHhcCcccccccc
Confidence 68999999998888888887765 78999999988643322222 1 24789999962 2233 3 56677
Q ss_pred ceEE
Q 007814 464 QHVI 467 (588)
Q Consensus 464 ~~VI 467 (588)
++||
T Consensus 138 ~~vV 141 (696)
T 2ykg_A 138 TLMI 141 (696)
T ss_dssp SEEE
T ss_pred cEEE
Confidence 8877
No 458
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=43.82 E-value=9.9 Score=34.20 Aligned_cols=16 Identities=19% Similarity=0.175 Sum_probs=13.3
Q ss_pred CEEEEecCCchHhHHH
Q 007814 182 DMIGIAFTGSGKTLVF 197 (588)
Q Consensus 182 dvii~a~TGsGKTl~~ 197 (588)
-+++.|+.|||||...
T Consensus 17 ~I~l~G~~GsGKsT~~ 32 (203)
T 1ukz_A 17 VIFVLGGPGAGKGTQC 32 (203)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4778899999999664
No 459
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A*
Probab=43.80 E-value=24 Score=39.40 Aligned_cols=69 Identities=13% Similarity=0.010 Sum_probs=50.3
Q ss_pred CCCCEEEEeCccccHHHHHHHHH----HcCCcEEEEeCCCCHHHHHHHHHHHhcCCcEEEEEcCcc------ccC-----
Q 007814 393 TPPPVLIFCENKADVDDIHEYLL----LKGVEAVAVHGGKDQEEREYAISSFKAGKKDVLVATDVA------SKG----- 457 (588)
Q Consensus 393 ~~~~viIF~~s~~~~~~l~~~L~----~~g~~~~~ihg~~~~~~R~~~~~~f~~g~~~vLVaT~~~------~~G----- 457 (588)
.+.+++|.++|+.-|..+++.+. ..|+.+.++.|+++...|.... ..+|+|+|+-- ..+
T Consensus 114 ~g~~vlVltPTreLA~Q~~e~~~~l~~~lgl~v~~i~GG~~~~~r~~~~------~~dIvvgTpgrl~fDyLrd~~~~~~ 187 (853)
T 2fsf_A 114 TGKGVHVVTVNDYLAQRDAENNRPLFEFLGLTVGINLPGMPAPAKREAY------AADITYGTNNEYGFDYLRDNMAFSP 187 (853)
T ss_dssp TSSCCEEEESSHHHHHHHHHHHHHHHHHTTCCEEECCTTCCHHHHHHHH------HSSEEEEEHHHHHHHHHHHTTCSSG
T ss_pred cCCcEEEEcCCHHHHHHHHHHHHHHHHhcCCeEEEEeCCCCHHHHHHhc------CCCEEEECCchhhHHHHHhhhhccH
Confidence 45689999999998877776654 4589999999999987655433 37899999631 122
Q ss_pred --CCCCCcceEE
Q 007814 458 --LDFPDIQHVI 467 (588)
Q Consensus 458 --lDip~v~~VI 467 (588)
++..+++++|
T Consensus 188 ~~~~~~~l~~lV 199 (853)
T 2fsf_A 188 EERVQRKLHYAL 199 (853)
T ss_dssp GGCCCCSCCEEE
T ss_pred hHhcccCCcEEE
Confidence 4556677766
No 460
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=43.62 E-value=3.4 Score=43.77 Aligned_cols=72 Identities=8% Similarity=0.190 Sum_probs=44.7
Q ss_pred CCEEEEEcCCHHHHHHHHHHHHHHhhcccccCCCCceEEEEEcCcchHHH---HHHHh-cCCcEEEeChHHHHHHHHccc
Q 007814 219 GPFCLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQ---LEVVK-RGVHIVVATPGRLKDMLAKKK 294 (588)
Q Consensus 219 ~~~~Lil~Ptr~La~Q~~~~~~~~~~~~~~~~~~~i~~~~~~gg~~~~~~---~~~l~-~~~~IvV~Tp~~L~~~l~~~~ 294 (588)
+.++||.|+++.-|..+++.+.+. ++.+.+++|+.+..++ ...+. ...+|+||| +++ ..+
T Consensus 357 ~~~~LVF~~s~~~a~~l~~~L~~~----------~~~v~~~hg~~~~~~R~~il~~f~~g~~~VLVaT-----~~l-~~G 420 (508)
T 3fho_A 357 IGQSIIFCKKKDTAEEIARRMTAD----------GHTVACLTGNLEGAQRDAIMDSFRVGTSKVLVTT-----NVI-ARG 420 (508)
T ss_dssp CCCEEEBCSSTTTTTHHHHHHTTT----------TCCCCEEC-----CTTGGGTHHHHSSSCCCCEEC-----C------
T ss_pred CCcEEEEECCHHHHHHHHHHHHhC----------CCcEEEEeCCCCHHHHHHHHHHHHCCCCeEEEeC-----Chh-hcC
Confidence 467999999999988877766553 6677888887654332 23343 357899999 444 346
Q ss_pred CCCCCcceeEec
Q 007814 295 MNLDNCRYLTLD 306 (588)
Q Consensus 295 ~~l~~~~~lViD 306 (588)
+++..+++||..
T Consensus 421 iDip~v~~VI~~ 432 (508)
T 3fho_A 421 IDVSQVNLVVNY 432 (508)
T ss_dssp CCCTTCCEEEC-
T ss_pred CCccCCCEEEEE
Confidence 778888888853
No 461
>2l82_A Designed protein OR32; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, de novo protein; NMR {Artificial gene}
Probab=43.61 E-value=94 Score=24.66 Aligned_cols=48 Identities=29% Similarity=0.369 Sum_probs=35.6
Q ss_pred eCccccHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhcCCcEEE
Q 007814 401 CENKADVDDIHEYLLLKGVEAVAVHGGKDQEEREYAISSFKAGKKDVL 448 (588)
Q Consensus 401 ~~s~~~~~~l~~~L~~~g~~~~~ihg~~~~~~R~~~~~~f~~g~~~vL 448 (588)
...+.-...+.+.-+..|+.+..++...+...|..+.+.|++...+|-
T Consensus 86 tddkewikdfieeakergvevfvvynnkdddrrkeaqqefrsdgvdvr 133 (162)
T 2l82_A 86 TDDKEWIKDFIEEAKERGVEVFVVYNNKDDDRRKEAQQEFRSDGVDVR 133 (162)
T ss_dssp CCCHHHHHHHHHHHHHTTCEEEEEEECSCHHHHHHHHHHHCCSSCEEE
T ss_pred cCcHHHHHHHHHHHHhcCcEEEEEecCCCchhHHHHHHHhhhcCceee
Confidence 333444445555556789999999999999999999999998765543
No 462
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=43.53 E-value=53 Score=33.32 Aligned_cols=90 Identities=11% Similarity=0.050 Sum_probs=50.2
Q ss_pred CCCCCCCccccCCHHHHHHHHHhcCeEeecCC-CCCCCCCCCCC-------CCCHHHHHHHHHC-CCC------------
Q 007814 106 TGWKPPLPIRRMSKKACDLIRKQWHIIVDGED-IPPPIKNFKDM-------RFPEPILKKLKAK-GIV------------ 164 (588)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~r~~~~i~v~g~~-~p~p~~~f~~~-------~l~~~l~~~l~~~-g~~------------ 164 (588)
..|.+....-..+...++.|..+-+-.|.|.- .|..-..|-.+ +.++ +..+.. .|.
T Consensus 73 ~~~~~~~~d~yvs~~~ir~~~lr~gd~v~g~~r~~~~~ER~faLl~v~~vn~~~p---e~~~~ri~Fe~ltp~yP~er~~ 149 (422)
T 3ice_A 73 SSYLAGPDDIYVSPSQIRRFNLRTGDTISGKIRPPKEGERYFALLKVNEVNFDKP---ENARNKILFENLTPLHANSRLR 149 (422)
T ss_dssp GTTCCCTTCEEBCHHHHHHHTCCTTCEEEEEEECCCSSCCSEEEEEEEEESSSCH---HHHTTSCCTTTSCEESCCSBCC
T ss_pred cCCCCCCCCeeeCHHHHHhcCCCCCCEEEEEEeCCCccchHHHHhccCcccCCCh---hhhcCCceeccccccCCCCccc
Confidence 35656555667888999888777766666543 22222111100 1111 111111 221
Q ss_pred ------CCcHHHHHHHHHHh---cCCCEEEEecCCchHhHHHH
Q 007814 165 ------QPTPIQVQGLPVVL---SGRDMIGIAFTGSGKTLVFV 198 (588)
Q Consensus 165 ------~p~~~Q~~~i~~il---~g~dvii~a~TGsGKTl~~~ 198 (588)
.|-..=..+|..++ .|+.+.+++|+|+|||....
T Consensus 150 Le~~~~~~~~tGiraID~~~pi~rGQr~~IvG~sG~GKTtLl~ 192 (422)
T 3ice_A 150 MERGNGSTEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQ 192 (422)
T ss_dssp CCCTTCCTTHHHHHHHHHHSCCBTTCEEEEECCSSSSHHHHHH
T ss_pred cccCCCCcccccceeeeeeeeecCCcEEEEecCCCCChhHHHH
Confidence 22333345555555 78999999999999996653
No 463
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=43.38 E-value=11 Score=34.04 Aligned_cols=20 Identities=15% Similarity=0.081 Sum_probs=16.2
Q ss_pred cCCCEEEEecCCchHhHHHH
Q 007814 179 SGRDMIGIAFTGSGKTLVFV 198 (588)
Q Consensus 179 ~g~dvii~a~TGsGKTl~~~ 198 (588)
.+.-+++.++.|||||.+.-
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~ 27 (215)
T 1nn5_A 8 RGALIVLEGVDRAGKSTQSR 27 (215)
T ss_dssp CCCEEEEEESTTSSHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHH
Confidence 46678899999999996643
No 464
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=43.04 E-value=20 Score=35.84 Aligned_cols=19 Identities=21% Similarity=0.329 Sum_probs=15.0
Q ss_pred cCCCEEEEecCCchHhHHH
Q 007814 179 SGRDMIGIAFTGSGKTLVF 197 (588)
Q Consensus 179 ~g~dvii~a~TGsGKTl~~ 197 (588)
.|.-+.+++|+|+|||...
T Consensus 156 ~g~vi~lvG~nGsGKTTll 174 (359)
T 2og2_A 156 KPAVIMIVGVNGGGKTTSL 174 (359)
T ss_dssp SSEEEEEECCTTSCHHHHH
T ss_pred CCeEEEEEcCCCChHHHHH
Confidence 4556788899999999553
No 465
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=42.89 E-value=14 Score=38.79 Aligned_cols=50 Identities=12% Similarity=-0.016 Sum_probs=28.7
Q ss_pred cCCCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEEEEEcCCHHHHHHHHHHH
Q 007814 179 SGRDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFCLIVCPSRELARQTYEVV 239 (588)
Q Consensus 179 ~g~dvii~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Q~~~~~ 239 (588)
.|.=+++.|++|+|||...+--+.. +.. ..+..++|+.- -.-..|+...+
T Consensus 241 ~G~l~li~G~pG~GKT~lal~~a~~-~a~---------~~g~~vl~~s~-E~s~~~l~~r~ 290 (503)
T 1q57_A 241 GGEVIMVTSGSGMVMSTFVRQQALQ-WGT---------AMGKKVGLAML-EESVEETAEDL 290 (503)
T ss_dssp TTCEEEEEESSCHHHHHHHHHHHHH-HTT---------TSCCCEEEEES-SSCHHHHHHHH
T ss_pred CCeEEEEeecCCCCchHHHHHHHHH-HHH---------hcCCcEEEEec-cCCHHHHHHHH
Confidence 4567888899999999654333332 221 11445677653 23344555544
No 466
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=42.79 E-value=10 Score=32.75 Aligned_cols=16 Identities=38% Similarity=0.343 Sum_probs=13.4
Q ss_pred CEEEEecCCchHhHHH
Q 007814 182 DMIGIAFTGSGKTLVF 197 (588)
Q Consensus 182 dvii~a~TGsGKTl~~ 197 (588)
.+++.++.|||||.+.
T Consensus 2 ~I~l~G~~GsGKsT~a 17 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVG 17 (168)
T ss_dssp EEEEESCTTSCHHHHH
T ss_pred eEEEECCCCCCHHHHH
Confidence 4788999999999654
No 467
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=42.78 E-value=9.1 Score=33.66 Aligned_cols=18 Identities=22% Similarity=-0.047 Sum_probs=11.0
Q ss_pred CCCEEEEecCCchHhHHH
Q 007814 180 GRDMIGIAFTGSGKTLVF 197 (588)
Q Consensus 180 g~dvii~a~TGsGKTl~~ 197 (588)
+.-+++.++.|||||...
T Consensus 5 ~~~I~l~G~~GsGKST~a 22 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTA 22 (183)
T ss_dssp CCEEEEECCC----CHHH
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 456888999999999664
No 468
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=42.10 E-value=13 Score=33.08 Aligned_cols=16 Identities=19% Similarity=0.314 Sum_probs=13.2
Q ss_pred CEEEEecCCchHhHHH
Q 007814 182 DMIGIAFTGSGKTLVF 197 (588)
Q Consensus 182 dvii~a~TGsGKTl~~ 197 (588)
.+++.|++|||||...
T Consensus 2 ~I~i~G~~GsGKsT~~ 17 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTIS 17 (205)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred EEEEECCCccCHHHHH
Confidence 3678999999999654
No 469
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=42.03 E-value=34 Score=31.70 Aligned_cols=46 Identities=26% Similarity=0.213 Sum_probs=37.6
Q ss_pred CCCEEEEeCccccHHHHHHHHHHcCCc-EEEEeCCCCHHHHHHHHHHHhcCCcEEEEEcC
Q 007814 394 PPPVLIFCENKADVDDIHEYLLLKGVE-AVAVHGGKDQEEREYAISSFKAGKKDVLVATD 452 (588)
Q Consensus 394 ~~~viIF~~s~~~~~~l~~~L~~~g~~-~~~ihg~~~~~~R~~~~~~f~~g~~~vLVaT~ 452 (588)
+.+++|+|+++.-+..+.+.+...++. +..++|+.. ...+|+|+|.
T Consensus 133 ~~~~liv~P~~~L~~q~~~~~~~~~~~~v~~~~g~~~-------------~~~~i~v~T~ 179 (237)
T 2fz4_A 133 STPTLIVVPTLALAEQWKERLGIFGEEYVGEFSGRIK-------------ELKPLTVSTY 179 (237)
T ss_dssp CSCEEEEESSHHHHHHHHHHHGGGCGGGEEEESSSCB-------------CCCSEEEEEH
T ss_pred CCCEEEEeCCHHHHHHHHHHHHhCCCCeEEEEeCCCC-------------CcCCEEEEeH
Confidence 678999999999999999988888888 888988764 2456777773
No 470
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=42.00 E-value=14 Score=32.98 Aligned_cols=16 Identities=31% Similarity=0.123 Sum_probs=13.1
Q ss_pred CEEEEecCCchHhHHH
Q 007814 182 DMIGIAFTGSGKTLVF 197 (588)
Q Consensus 182 dvii~a~TGsGKTl~~ 197 (588)
-+.+.+++|||||.+.
T Consensus 10 ~I~i~G~~GsGKST~~ 25 (203)
T 1uf9_A 10 IIGITGNIGSGKSTVA 25 (203)
T ss_dssp EEEEEECTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4677899999999664
No 471
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=41.72 E-value=20 Score=37.85 Aligned_cols=17 Identities=29% Similarity=0.227 Sum_probs=14.9
Q ss_pred CCEEEEecCCchHhHHH
Q 007814 181 RDMIGIAFTGSGKTLVF 197 (588)
Q Consensus 181 ~dvii~a~TGsGKTl~~ 197 (588)
+.+++.||+|+|||.++
T Consensus 78 ~~lLL~GppGtGKTtla 94 (516)
T 1sxj_A 78 RAAMLYGPPGIGKTTAA 94 (516)
T ss_dssp SEEEEECSTTSSHHHHH
T ss_pred cEEEEECCCCCCHHHHH
Confidence 68999999999999664
No 472
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=41.67 E-value=12 Score=35.09 Aligned_cols=18 Identities=22% Similarity=0.342 Sum_probs=15.4
Q ss_pred cCCCEEEEecCCchHhHH
Q 007814 179 SGRDMIGIAFTGSGKTLV 196 (588)
Q Consensus 179 ~g~dvii~a~TGsGKTl~ 196 (588)
.|.-+.+++|+|||||..
T Consensus 30 ~Ge~~~i~G~nGsGKSTL 47 (237)
T 2cbz_A 30 EGALVAVVGQVGCGKSSL 47 (237)
T ss_dssp TTCEEEEECSTTSSHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 577788999999999954
No 473
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=41.59 E-value=15 Score=33.53 Aligned_cols=18 Identities=33% Similarity=0.377 Sum_probs=14.8
Q ss_pred CCCEEEEecCCchHhHHH
Q 007814 180 GRDMIGIAFTGSGKTLVF 197 (588)
Q Consensus 180 g~dvii~a~TGsGKTl~~ 197 (588)
+..+++.++.|||||...
T Consensus 5 ~~~I~l~G~~GsGKsT~a 22 (217)
T 3be4_A 5 KHNLILIGAPGSGKGTQC 22 (217)
T ss_dssp CCEEEEEECTTSSHHHHH
T ss_pred ceEEEEECCCCCCHHHHH
Confidence 456889999999999664
No 474
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=41.57 E-value=13 Score=34.18 Aligned_cols=18 Identities=28% Similarity=0.193 Sum_probs=15.6
Q ss_pred cCCCEEEEecCCchHhHH
Q 007814 179 SGRDMIGIAFTGSGKTLV 196 (588)
Q Consensus 179 ~g~dvii~a~TGsGKTl~ 196 (588)
.|.-+.+++|.|||||..
T Consensus 34 ~Ge~~~iiG~NGsGKSTL 51 (214)
T 1sgw_A 34 KGNVVNFHGPNGIGKTTL 51 (214)
T ss_dssp TTCCEEEECCTTSSHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 677888999999999954
No 475
>3h75_A Periplasmic sugar-binding domain protein; protein structure initiative II (PSI II), sugar binding PROT alpha/beta fold; 1.60A {Pseudomonas fluorescens pf-5}
Probab=41.47 E-value=2.5e+02 Score=27.00 Aligned_cols=38 Identities=13% Similarity=0.073 Sum_probs=29.7
Q ss_pred HHHHHHHhhcCCCCEEEEeCccccHHHHHHHHHHcCCc
Q 007814 383 IVYLLECLQKTPPPVLIFCENKADVDDIHEYLLLKGVE 420 (588)
Q Consensus 383 ~~~ll~~l~~~~~~viIF~~s~~~~~~l~~~L~~~g~~ 420 (588)
...+...+...+.+..|||.+-..+..+.+.|+..|+.
T Consensus 193 ~~~~~~~L~~~~~~~aI~~~~d~~a~g~~~al~~~G~~ 230 (350)
T 3h75_A 193 YRQAQQLLKRYPKTQLVWSANDEMALGAMQAARELGRK 230 (350)
T ss_dssp HHHHHHHHHHCTTEEEEEESSHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHhCCCcCEEEECChHHHHHHHHHHHHcCCC
Confidence 34455556666678899999999999999999998865
No 476
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=41.37 E-value=12 Score=33.77 Aligned_cols=55 Identities=13% Similarity=0.203 Sum_probs=34.3
Q ss_pred CCCEEEEeCccccHHH-HHHHHHH---cCCcEEEEeCCCCHHHHHHHHHHHhcCCcEEEEEcC
Q 007814 394 PPPVLIFCENKADVDD-IHEYLLL---KGVEAVAVHGGKDQEEREYAISSFKAGKKDVLVATD 452 (588)
Q Consensus 394 ~~~viIF~~s~~~~~~-l~~~L~~---~g~~~~~ihg~~~~~~R~~~~~~f~~g~~~vLVaT~ 452 (588)
..++||+|+++.-+.. +.+.+.. .++.+..++|+.....+...+. +..+|+|+|.
T Consensus 82 ~~~~lil~p~~~L~~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~----~~~~i~v~T~ 140 (216)
T 3b6e_A 82 PGKVIVLVNKVLLVEQLFRKEFQPFLKKWYRVIGLSGDTQLKISFPEVV----KSCDIIISTA 140 (216)
T ss_dssp CCCEEEEESSHHHHHHHHHHTHHHHHTTTSCEEECCC---CCCCHHHHH----HHCSEEEEEH
T ss_pred CCcEEEEECHHHHHHHHHHHHHHHHhccCceEEEEeCCcccchhHHhhc----cCCCEEEECH
Confidence 5689999999988777 5555543 3678888998764332211111 2467888885
No 477
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=41.34 E-value=10 Score=39.63 Aligned_cols=17 Identities=29% Similarity=0.540 Sum_probs=14.8
Q ss_pred CCEEEEecCCchHhHHH
Q 007814 181 RDMIGIAFTGSGKTLVF 197 (588)
Q Consensus 181 ~dvii~a~TGsGKTl~~ 197 (588)
+.+++.+|+|+|||+.+
T Consensus 50 ~gvLL~GppGtGKT~La 66 (476)
T 2ce7_A 50 KGILLVGPPGTGKTLLA 66 (476)
T ss_dssp SEEEEECCTTSSHHHHH
T ss_pred CeEEEECCCCCCHHHHH
Confidence 56999999999999664
No 478
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=41.26 E-value=20 Score=35.18 Aligned_cols=14 Identities=36% Similarity=0.570 Sum_probs=12.0
Q ss_pred EEEEecCCchHhHH
Q 007814 183 MIGIAFTGSGKTLV 196 (588)
Q Consensus 183 vii~a~TGsGKTl~ 196 (588)
+++.++.|||||..
T Consensus 7 ~~i~G~~GaGKTTl 20 (318)
T 1nij_A 7 TLLTGFLGAGKTTL 20 (318)
T ss_dssp EEEEESSSSSCHHH
T ss_pred EEEEecCCCCHHHH
Confidence 57889999999955
No 479
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=41.11 E-value=57 Score=35.85 Aligned_cols=83 Identities=17% Similarity=0.135 Sum_probs=53.7
Q ss_pred CCEEEEEcCCHHHHHHHHHHHHHHhhcccc-----------cCC------------CCceEEEEEcCcchHHHHHHH---
Q 007814 219 GPFCLIVCPSRELARQTYEVVEQFLTPMRD-----------AGY------------PDLRTLLCIGGVDMRSQLEVV--- 272 (588)
Q Consensus 219 ~~~~Lil~Ptr~La~Q~~~~~~~~~~~~~~-----------~~~------------~~i~~~~~~gg~~~~~~~~~l--- 272 (588)
+..+||.||++.-+..++..+.+.+..... .+. ....+..++|+.+..++....
T Consensus 237 ~~~~LVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~~~~~v~~~h~~l~~~~R~~v~~~f 316 (720)
T 2zj8_A 237 KKGALIFVNMRRKAERVALELSKKVKSLLTKPEIRALNELADSLEENPTNEKLAKAIRGGVAFHHAGLGRDERVLVEENF 316 (720)
T ss_dssp TCCEEEECSCHHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHTSCSCHHHHHHHHHHTTTEEEECTTSCHHHHHHHHHHH
T ss_pred CCCEEEEecCHHHHHHHHHHHHHHHHHhcChhhHHHHHHHHHHHhcccchHHHHHHHhcCeeeecCCCCHHHHHHHHHHH
Confidence 567999999999999999888775432000 000 012478889998877665433
Q ss_pred h-cCCcEEEeChHHHHHHHHcccCCCCCcceeEecCc
Q 007814 273 K-RGVHIVVATPGRLKDMLAKKKMNLDNCRYLTLDEA 308 (588)
Q Consensus 273 ~-~~~~IvV~Tp~~L~~~l~~~~~~l~~~~~lViDEa 308 (588)
. ...+|+|||. .+ ..++++..+.+ |||..
T Consensus 317 ~~g~~~vlvaT~-----~l-~~Gvdip~~~~-VI~~~ 346 (720)
T 2zj8_A 317 RKGIIKAVVATP-----TL-SAGINTPAFRV-IIRDI 346 (720)
T ss_dssp HTTSSCEEEECS-----TT-GGGCCCCBSEE-EECCS
T ss_pred HCCCCeEEEECc-----Hh-hccCCCCceEE-EEcCC
Confidence 2 3578999993 33 34667777776 44433
No 480
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=41.05 E-value=11 Score=33.24 Aligned_cols=15 Identities=33% Similarity=0.253 Sum_probs=12.7
Q ss_pred EEEEecCCchHhHHH
Q 007814 183 MIGIAFTGSGKTLVF 197 (588)
Q Consensus 183 vii~a~TGsGKTl~~ 197 (588)
+++.|+.|||||...
T Consensus 3 I~l~G~~GsGKsT~~ 17 (195)
T 2pbr_A 3 IAFEGIDGSGKTTQA 17 (195)
T ss_dssp EEEECSTTSCHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 678899999999654
No 481
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=41.01 E-value=12 Score=36.50 Aligned_cols=18 Identities=22% Similarity=0.523 Sum_probs=15.8
Q ss_pred cCCCEEEEecCCchHhHH
Q 007814 179 SGRDMIGIAFTGSGKTLV 196 (588)
Q Consensus 179 ~g~dvii~a~TGsGKTl~ 196 (588)
.|.-+.+++|+|||||..
T Consensus 79 ~Ge~vaivG~sGsGKSTL 96 (306)
T 3nh6_A 79 PGQTLALVGPSGAGKSTI 96 (306)
T ss_dssp TTCEEEEESSSCHHHHHH
T ss_pred CCCEEEEECCCCchHHHH
Confidence 678889999999999955
No 482
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=40.99 E-value=11 Score=35.65 Aligned_cols=17 Identities=24% Similarity=0.223 Sum_probs=14.0
Q ss_pred CCEEEEecCCchHhHHH
Q 007814 181 RDMIGIAFTGSGKTLVF 197 (588)
Q Consensus 181 ~dvii~a~TGsGKTl~~ 197 (588)
.-++++|++|||||...
T Consensus 5 ~lIvl~G~pGSGKSTla 21 (260)
T 3a4m_A 5 MLIILTGLPGVGKSTFS 21 (260)
T ss_dssp EEEEEECCTTSSHHHHH
T ss_pred EEEEEEcCCCCCHHHHH
Confidence 35788999999999654
No 483
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=40.94 E-value=14 Score=34.46 Aligned_cols=18 Identities=28% Similarity=0.176 Sum_probs=14.9
Q ss_pred CCCEEEEecCCchHhHHH
Q 007814 180 GRDMIGIAFTGSGKTLVF 197 (588)
Q Consensus 180 g~dvii~a~TGsGKTl~~ 197 (588)
+.-++++||.|||||...
T Consensus 27 ~~~i~l~G~~GsGKSTl~ 44 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVC 44 (246)
T ss_dssp CCEEEEECCTTSSHHHHH
T ss_pred CcEEEEECCCCCCHHHHH
Confidence 467889999999999654
No 484
>1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A
Probab=40.89 E-value=61 Score=33.57 Aligned_cols=77 Identities=14% Similarity=0.172 Sum_probs=52.3
Q ss_pred CCCEEEEEcCCHHHHHHHHHHHHHHhhcccccCCCCceEEEEEcCcchHHHHHH---HhcC--Cc-EEEeChHHHHHHHH
Q 007814 218 EGPFCLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEV---VKRG--VH-IVVATPGRLKDMLA 291 (588)
Q Consensus 218 ~~~~~Lil~Ptr~La~Q~~~~~~~~~~~~~~~~~~~i~~~~~~gg~~~~~~~~~---l~~~--~~-IvV~Tp~~L~~~l~ 291 (588)
.+.++||.+.++..+..+.+.+.... ++.+..++|+.+..++... +..+ .. ++++| +.+
T Consensus 340 ~~~k~lvF~~~~~~~~~l~~~l~~~~---------~~~~~~~~g~~~~~~R~~~~~~F~~~~~~~vil~st-----~~~- 404 (500)
T 1z63_A 340 EGDKIAIFTQFVDMGKIIRNIIEKEL---------NTEVPFLYGELSKKERDDIISKFQNNPSVKFIVLSV-----KAG- 404 (500)
T ss_dssp TTCCEEEECSCHHHHHHHHHHHHHHH---------TCCCCEEETTSCHHHHHHHHHHHHHCTTCCCCEEEC-----CCC-
T ss_pred cCCcEEEEEehHHHHHHHHHHHHHhh---------CCCeEEEECCCCHHHHHHHHHHhcCCCCCCEEEEec-----ccc-
Confidence 46689999999999888887777642 5667788998876555433 3444 33 56666 222
Q ss_pred cccCCCCCcceeEecCcc
Q 007814 292 KKKMNLDNCRYLTLDEAD 309 (588)
Q Consensus 292 ~~~~~l~~~~~lViDEah 309 (588)
..++++..++.||+=+..
T Consensus 405 ~~Glnl~~~~~vi~~d~~ 422 (500)
T 1z63_A 405 GFGINLTSANRVIHFDRW 422 (500)
T ss_dssp -CCCCCTTCSEEEESSCC
T ss_pred cCCCchhhCCEEEEeCCC
Confidence 346778888888875544
No 485
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=40.69 E-value=8.1 Score=36.50 Aligned_cols=18 Identities=22% Similarity=0.246 Sum_probs=14.6
Q ss_pred CCCEEEEecCCchHhHHH
Q 007814 180 GRDMIGIAFTGSGKTLVF 197 (588)
Q Consensus 180 g~dvii~a~TGsGKTl~~ 197 (588)
+..++++|++|||||..+
T Consensus 32 ~~~i~l~G~~GsGKSTla 49 (253)
T 2p5t_B 32 PIAILLGGQSGAGKTTIH 49 (253)
T ss_dssp CEEEEEESCGGGTTHHHH
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 346888999999999654
No 486
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=40.68 E-value=15 Score=33.55 Aligned_cols=17 Identities=18% Similarity=0.122 Sum_probs=13.6
Q ss_pred CEEEEecCCchHhHHHH
Q 007814 182 DMIGIAFTGSGKTLVFV 198 (588)
Q Consensus 182 dvii~a~TGsGKTl~~~ 198 (588)
.+++.+|+||||+..+-
T Consensus 2 ~Iil~GpPGsGKgTqa~ 18 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAK 18 (206)
T ss_dssp EEEEECSTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 36888999999996643
No 487
>2hhg_A Hypothetical protein RPA3614; MCSG, structural genomics, rohopseudom palustris, PSI-2, protein structure initiative; 1.20A {Rhodopseudomonas palustris}
Probab=40.66 E-value=13 Score=31.12 Aligned_cols=37 Identities=11% Similarity=0.200 Sum_probs=31.9
Q ss_pred CCCCEEEEeCccccHHHHHHHHHHcCCc-EEEEeCCCC
Q 007814 393 TPPPVLIFCENKADVDDIHEYLLLKGVE-AVAVHGGKD 429 (588)
Q Consensus 393 ~~~~viIF~~s~~~~~~l~~~L~~~g~~-~~~ihg~~~ 429 (588)
...+++|||.+-..+...+..|...|+. +..+.||+.
T Consensus 85 ~~~~ivvyC~~G~rs~~a~~~L~~~G~~~v~~l~GG~~ 122 (139)
T 2hhg_A 85 EDKKFVFYCAGGLRSALAAKTAQDMGLKPVAHIEGGFG 122 (139)
T ss_dssp SSSEEEEECSSSHHHHHHHHHHHHHTCCSEEEETTHHH
T ss_pred CCCeEEEECCCChHHHHHHHHHHHcCCCCeEEecCCHH
Confidence 4568999999988899999999999996 888999853
No 488
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=40.56 E-value=22 Score=36.64 Aligned_cols=19 Identities=26% Similarity=0.324 Sum_probs=15.3
Q ss_pred CCEEEEecCCchHhHHHHH
Q 007814 181 RDMIGIAFTGSGKTLVFVL 199 (588)
Q Consensus 181 ~dvii~a~TGsGKTl~~~l 199 (588)
+.+++++++|+|||....-
T Consensus 100 ~vI~ivG~~GvGKTTla~~ 118 (432)
T 2v3c_C 100 NVILLVGIQGSGKTTTAAK 118 (432)
T ss_dssp CCEEEECCSSSSTTHHHHH
T ss_pred eEEEEECCCCCCHHHHHHH
Confidence 5788999999999965443
No 489
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=40.55 E-value=21 Score=40.88 Aligned_cols=70 Identities=13% Similarity=0.173 Sum_probs=46.2
Q ss_pred CCCEEEEeCccccHHHHHHHHHHc----CCcEEEEeCCCCHHHHHHHHHHHhcCCcEEEEEcCc-----cccC-C-CCCC
Q 007814 394 PPPVLIFCENKADVDDIHEYLLLK----GVEAVAVHGGKDQEEREYAISSFKAGKKDVLVATDV-----ASKG-L-DFPD 462 (588)
Q Consensus 394 ~~~viIF~~s~~~~~~l~~~L~~~----g~~~~~ihg~~~~~~R~~~~~~f~~g~~~vLVaT~~-----~~~G-l-Dip~ 462 (588)
+.++||.++++.-+..+++.+... ++.+..+||+.+...+...+. +..+|+|+|.- +..+ + .+.+
T Consensus 296 ~~~vLvl~Pt~~L~~Q~~~~~~~~~~~~~~~v~~~~G~~~~~~~~~~~~----~~~~IvI~Tp~~L~~~l~~~~~~~l~~ 371 (936)
T 4a2w_A 296 KAKVVFLATKVPVYEQQKNVFKHHFERQGYSVQGISGENFSNVSVEKVI----EDSDIIVVTPQILVNSFEDGTLTSLSI 371 (936)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHHHTTTCCEEEECCC-----CCHHHH----HHCSEEEECHHHHHHHHHSSSCCCGGG
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHHhcccCceEEEEECCcchhhHHHHhc----cCCCEEEecHHHHHHHHHcCccccccC
Confidence 678999999998888888777664 899999999987654332221 24679999952 1222 3 5566
Q ss_pred cceEE
Q 007814 463 IQHVI 467 (588)
Q Consensus 463 v~~VI 467 (588)
+++||
T Consensus 372 ~~liV 376 (936)
T 4a2w_A 372 FTLMI 376 (936)
T ss_dssp CSEEE
T ss_pred CCEEE
Confidence 77777
No 490
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=39.79 E-value=16 Score=33.21 Aligned_cols=16 Identities=19% Similarity=0.092 Sum_probs=13.5
Q ss_pred CEEEEecCCchHhHHH
Q 007814 182 DMIGIAFTGSGKTLVF 197 (588)
Q Consensus 182 dvii~a~TGsGKTl~~ 197 (588)
.+++.++.|||||...
T Consensus 2 ~I~l~G~~GsGKsT~a 17 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQA 17 (214)
T ss_dssp EEEEEESTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4788999999999664
No 491
>1vee_A Proline-rich protein family; hypothetical protein, structural genomics, rhodanese domain, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} PDB: 2dcq_A
Probab=39.66 E-value=22 Score=29.72 Aligned_cols=37 Identities=19% Similarity=0.347 Sum_probs=32.0
Q ss_pred CCCCEEEEeCccccHHHHHHHHHHcCCc-EEEEeCCCC
Q 007814 393 TPPPVLIFCENKADVDDIHEYLLLKGVE-AVAVHGGKD 429 (588)
Q Consensus 393 ~~~~viIF~~s~~~~~~l~~~L~~~g~~-~~~ihg~~~ 429 (588)
...+++|||.+-..+...+..|...|+. +..+.||+.
T Consensus 73 ~~~~ivv~C~sG~RS~~aa~~L~~~G~~~v~~l~GG~~ 110 (134)
T 1vee_A 73 ENTTLYILDKFDGNSELVAELVALNGFKSAYAIKDGAE 110 (134)
T ss_dssp GGCEEEEECSSSTTHHHHHHHHHHHTCSEEEECTTTTT
T ss_pred CCCEEEEEeCCCCcHHHHHHHHHHcCCcceEEecCCcc
Confidence 3568999999999999999999999995 778889874
No 492
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=39.46 E-value=14 Score=34.26 Aligned_cols=18 Identities=33% Similarity=0.412 Sum_probs=15.0
Q ss_pred cCCCEEEEecCCchHhHH
Q 007814 179 SGRDMIGIAFTGSGKTLV 196 (588)
Q Consensus 179 ~g~dvii~a~TGsGKTl~ 196 (588)
.|.-+.+++|.|||||..
T Consensus 29 ~Ge~~~iiG~nGsGKSTL 46 (224)
T 2pcj_A 29 KGEFVSIIGASGSGKSTL 46 (224)
T ss_dssp TTCEEEEEECTTSCHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 566778899999999954
No 493
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=39.35 E-value=53 Score=35.95 Aligned_cols=82 Identities=20% Similarity=0.153 Sum_probs=53.2
Q ss_pred CCCEEEEEcCCHHHHHHHHHHHHHHhhcccccC---------CC-----------CceEEEEEcCcchHHHHHHHh----
Q 007814 218 EGPFCLIVCPSRELARQTYEVVEQFLTPMRDAG---------YP-----------DLRTLLCIGGVDMRSQLEVVK---- 273 (588)
Q Consensus 218 ~~~~~Lil~Ptr~La~Q~~~~~~~~~~~~~~~~---------~~-----------~i~~~~~~gg~~~~~~~~~l~---- 273 (588)
.+..+||.||++.-+..+++.+...+....... .+ ...+..++|+.+..++.....
T Consensus 241 ~~~~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~v~~~h~~l~~~~R~~v~~~f~~ 320 (702)
T 2p6r_A 241 ENGGVLVFESTRRGAEKTAVKLSAITAKYVENEGLEKAILEENEGEMSRKLAECVRKGAAFHHAGLLNGQRRVVEDAFRR 320 (702)
T ss_dssp TTCCEEEECSSHHHHHHHHHHHHHHHHTTCCCSSHHHHHHTTCCSHHHHHHHHHHHTTCCEECTTSCHHHHHHHHHHHHT
T ss_pred cCCCEEEEcCCHHHHHHHHHHHHHHHHhhcChHHHHHHHHhhccccccHHHHHHHhcCeEEecCCCCHHHHHHHHHHHHC
Confidence 356799999999999999888876532210000 00 124677899988766654432
Q ss_pred cCCcEEEeChHHHHHHHHcccCCCCCcceeEe
Q 007814 274 RGVHIVVATPGRLKDMLAKKKMNLDNCRYLTL 305 (588)
Q Consensus 274 ~~~~IvV~Tp~~L~~~l~~~~~~l~~~~~lVi 305 (588)
...+|+|||. .+ ..++++..+.+||.
T Consensus 321 g~~~vlvaT~-----~l-~~Gidip~~~~VI~ 346 (702)
T 2p6r_A 321 GNIKVVVATP-----TL-AAGVNLPARRVIVR 346 (702)
T ss_dssp TSCCEEEECS-----TT-TSSSCCCBSEEEEC
T ss_pred CCCeEEEECc-----HH-hccCCCCceEEEEc
Confidence 3579999993 33 34677777777554
No 494
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=39.24 E-value=13 Score=34.43 Aligned_cols=18 Identities=33% Similarity=0.403 Sum_probs=15.5
Q ss_pred cCCCEEEEecCCchHhHH
Q 007814 179 SGRDMIGIAFTGSGKTLV 196 (588)
Q Consensus 179 ~g~dvii~a~TGsGKTl~ 196 (588)
.|.-+.+++|.|||||..
T Consensus 33 ~Ge~~~i~G~nGsGKSTL 50 (229)
T 2pze_A 33 RGQLLAVAGSTGAGKTSL 50 (229)
T ss_dssp TTCEEEEECCTTSSHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 677888999999999954
No 495
>3nzo_A UDP-N-acetylglucosamine 4,6-dehydratase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, NAD; HET: MSE NAD; 2.10A {Vibrio fischeri} PDB: 3pvz_A*
Probab=39.23 E-value=2.3e+02 Score=28.16 Aligned_cols=90 Identities=12% Similarity=0.026 Sum_probs=53.7
Q ss_pred HHHHHHHhcCCCEEEEecCCc-hHhHHHHHHHHHHHHhhcccCCCCCCCCC-EEEEEcCCHHHHHHHHHHHHHHhhcccc
Q 007814 171 VQGLPVVLSGRDMIGIAFTGS-GKTLVFVLPMIMIAMHEEMMMPIVPGEGP-FCLIVCPSRELARQTYEVVEQFLTPMRD 248 (588)
Q Consensus 171 ~~~i~~il~g~dvii~a~TGs-GKTl~~~lp~l~~~~~~~~~~~~~~~~~~-~~Lil~Ptr~La~Q~~~~~~~~~~~~~~ 248 (588)
...+...+.++.+++.+.||+ |..++-.| .. .|+ .++++.-+..-..++...+......
T Consensus 26 ~~~~~~~~~~k~vLVTGatG~IG~~l~~~L------~~----------~g~~~V~~~~r~~~~~~~~~~~l~~~~~~--- 86 (399)
T 3nzo_A 26 EKELQSVVSQSRFLVLGGAGSIGQAVTKEI------FK----------RNPQKLHVVDISENNMVELVRDIRSSFGY--- 86 (399)
T ss_dssp HHHHHHHHHTCEEEEETTTSHHHHHHHHHH------HT----------TCCSEEEEECSCHHHHHHHHHHHHHHTCC---
T ss_pred HHHHHHHhCCCEEEEEcCChHHHHHHHHHH------HH----------CCCCEEEEEECCcchHHHHHHHHHHhcCC---
Confidence 344556678999999999885 66655332 22 453 6666666655555555555544321
Q ss_pred cCCCCceEEEEEcCcchHHHHHHHh--cCCcEEEeC
Q 007814 249 AGYPDLRTLLCIGGVDMRSQLEVVK--RGVHIVVAT 282 (588)
Q Consensus 249 ~~~~~i~~~~~~gg~~~~~~~~~l~--~~~~IvV~T 282 (588)
.+..+..+.++.........+. .++++||-.
T Consensus 87 ---~~~~v~~~~~Dl~d~~~~~~~~~~~~~D~Vih~ 119 (399)
T 3nzo_A 87 ---INGDFQTFALDIGSIEYDAFIKADGQYDYVLNL 119 (399)
T ss_dssp ---CSSEEEEECCCTTSHHHHHHHHHCCCCSEEEEC
T ss_pred ---CCCcEEEEEEeCCCHHHHHHHHHhCCCCEEEEC
Confidence 1356677777766555444443 467887754
No 496
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=39.21 E-value=13 Score=35.71 Aligned_cols=18 Identities=22% Similarity=0.261 Sum_probs=15.2
Q ss_pred cCCCEEEEecCCchHhHH
Q 007814 179 SGRDMIGIAFTGSGKTLV 196 (588)
Q Consensus 179 ~g~dvii~a~TGsGKTl~ 196 (588)
.|.-+.+++|+|||||..
T Consensus 33 ~Ge~~~iiGpnGsGKSTL 50 (275)
T 3gfo_A 33 RGEVTAILGGNGVGKSTL 50 (275)
T ss_dssp TTSEEEEECCTTSSHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 567788899999999954
No 497
>4fn4_A Short chain dehydrogenase; NADH-binding, rossmann fold, oxidoreductase; HET: NAD; 1.75A {Sulfolobus acidocaldarius}
Probab=39.04 E-value=1.4e+02 Score=27.97 Aligned_cols=81 Identities=12% Similarity=0.157 Sum_probs=53.0
Q ss_pred hcCCCEEEEe-cCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEEEEEcCCHHHHHHHHHHHHHHhhcccccCCCCceE
Q 007814 178 LSGRDMIGIA-FTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFCLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRT 256 (588)
Q Consensus 178 l~g~dvii~a-~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Q~~~~~~~~~~~~~~~~~~~i~~ 256 (588)
|+||-+++.+ ..|-|+..+-.+. . .|..++++.-+.+-+.++.+.++.. +-++
T Consensus 5 L~gKvalVTGas~GIG~aiA~~la------~----------~Ga~Vv~~~~~~~~~~~~~~~i~~~----------g~~~ 58 (254)
T 4fn4_A 5 LKNKVVIVTGAGSGIGRAIAKKFA------L----------NDSIVVAVELLEDRLNQIVQELRGM----------GKEV 58 (254)
T ss_dssp GTTCEEEEETTTSHHHHHHHHHHH------H----------TTCEEEEEESCHHHHHHHHHHHHHT----------TCCE
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHH------H----------cCCEEEEEECCHHHHHHHHHHHHhc----------CCcE
Confidence 5788877764 4455766553321 1 5778888877877778877777665 4566
Q ss_pred EEEEcCcchHHHHHHHh-------cCCcEEEeChH
Q 007814 257 LLCIGGVDMRSQLEVVK-------RGVHIVVATPG 284 (588)
Q Consensus 257 ~~~~gg~~~~~~~~~l~-------~~~~IvV~Tp~ 284 (588)
..+..+....+....+- .+.||+|-+.+
T Consensus 59 ~~~~~Dvt~~~~v~~~~~~~~~~~G~iDiLVNNAG 93 (254)
T 4fn4_A 59 LGVKADVSKKKDVEEFVRRTFETYSRIDVLCNNAG 93 (254)
T ss_dssp EEEECCTTSHHHHHHHHHHHHHHHSCCCEEEECCC
T ss_pred EEEEccCCCHHHHHHHHHHHHHHcCCCCEEEECCc
Confidence 67777776665554432 36888887754
No 498
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=38.75 E-value=13 Score=32.97 Aligned_cols=15 Identities=27% Similarity=0.308 Sum_probs=12.6
Q ss_pred EEEEecCCchHhHHH
Q 007814 183 MIGIAFTGSGKTLVF 197 (588)
Q Consensus 183 vii~a~TGsGKTl~~ 197 (588)
+++.|+.|||||...
T Consensus 3 I~l~G~~GsGKsT~~ 17 (197)
T 2z0h_A 3 ITFEGIDGSGKSTQI 17 (197)
T ss_dssp EEEECSTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 578899999999664
No 499
>3bs4_A Uncharacterized protein PH0321; structural genomics, unknown function, PSI-2, protein struct initiative; 1.60A {Pyrococcus horikoshii}
Probab=38.62 E-value=54 Score=31.06 Aligned_cols=52 Identities=8% Similarity=0.019 Sum_probs=31.0
Q ss_pred cCCCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEEEEEcCCHHHHHHHHHHHHHH
Q 007814 179 SGRDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFCLIVCPSRELARQTYEVVEQF 242 (588)
Q Consensus 179 ~g~dvii~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~Lil~Ptr~La~Q~~~~~~~~ 242 (588)
.|..+++.+.+|+||| ++.+-.+..... +|-+++|+.-. +-..++.+.++.+
T Consensus 20 ~gs~~li~g~p~~~~~-~l~~qfl~~g~~----------~Ge~~~~~~~~-e~~~~l~~~~~~~ 71 (260)
T 3bs4_A 20 HSLILIHEEDASSRGK-DILFYILSRKLK----------SDNLVGMFSIS-YPLQLIIRILSRF 71 (260)
T ss_dssp TCEEEEEECSGGGCHH-HHHHHHHHHHHH----------TTCEEEEEECS-SCHHHHHHHHHHT
T ss_pred CCcEEEEEeCCCccHH-HHHHHHHHHHHH----------CCCcEEEEEEe-CCHHHHHHHHHHc
Confidence 4456777767777777 444444443333 45677777653 4456666667666
No 500
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=38.60 E-value=33 Score=41.67 Aligned_cols=39 Identities=23% Similarity=0.238 Sum_probs=26.9
Q ss_pred cCCCEEEEecCCchHhHHHHHHHHHHHHhhcccCCCCCCCCCEEEEEcCC
Q 007814 179 SGRDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFCLIVCPS 228 (588)
Q Consensus 179 ~g~dvii~a~TGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~~~Lil~Pt 228 (588)
.|+.+++.+++|+|||...+--+...+ . .|..++|+.-.
T Consensus 33 ~G~i~lI~G~pGsGKT~LAlqla~~~~-~----------~G~~vlYI~te 71 (1706)
T 3cmw_A 33 MGRIVEIYGPESSGKTTLTLQVIAAAQ-R----------EGKTCAFIDAE 71 (1706)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHHHH-H----------TTCCEEEECTT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHh-h----------CCCceEEEEec
Confidence 468999999999999976554444433 2 24567777654
Done!