Query 007815
Match_columns 588
No_of_seqs 171 out of 984
Neff 7.0
Searched_HMMs 29240
Date Mon Mar 25 11:11:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007815.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/007815hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4epl_A Jasmonic acid-amido syn 100.0 2E-129 8E-134 1077.8 51.9 570 9-587 6-581 (581)
2 4b2g_A GH3-1 auxin conjugating 100.0 2E-126 7E-131 1057.9 44.6 570 12-587 12-589 (609)
3 4eql_A 4-substituted benzoates 100.0 3E-125 1E-129 1047.3 40.1 554 18-584 13-580 (581)
4 3qov_A Phenylacetate-coenzyme 99.9 6.4E-23 2.2E-27 221.3 26.2 377 32-541 18-420 (436)
5 2y4o_A Phenylacetate-coenzyme 99.9 3.6E-22 1.2E-26 215.9 25.8 380 32-541 24-426 (443)
6 2y27_A Phenylacetate-coenzyme 99.9 2.2E-22 7.5E-27 217.2 24.0 381 32-541 22-422 (437)
7 3e7w_A D-alanine--poly(phospho 99.7 1.2E-14 4.2E-19 159.7 25.0 135 298-460 256-420 (511)
8 3etc_A AMP-binding protein; ad 99.6 9.5E-15 3.3E-19 163.6 22.8 131 301-459 340-496 (580)
9 2d1s_A Luciferase, luciferin 4 99.6 1.7E-14 6E-19 160.1 23.7 133 301-459 308-462 (548)
10 3ni2_A 4-coumarate:COA ligase; 99.6 1.2E-14 4E-19 160.9 21.7 134 300-459 295-455 (536)
11 3hgu_A EHPF; phenazine, antibi 99.6 2.2E-14 7.4E-19 151.1 21.9 318 35-445 21-367 (369)
12 4fuq_A Malonyl COA synthetase; 99.6 2.8E-14 9.5E-19 156.8 22.7 134 299-459 265-420 (503)
13 3fce_A D-alanine--poly(phospho 99.6 1.7E-14 5.8E-19 158.5 20.6 134 299-460 258-421 (512)
14 3l8c_A D-alanine--poly(phospho 99.6 1.5E-14 5.1E-19 159.2 18.0 133 300-459 262-424 (521)
15 3kxw_A Saframycin MX1 syntheta 99.6 1.2E-14 4.2E-19 162.0 17.0 109 393-513 393-529 (590)
16 3g7s_A Long-chain-fatty-acid-- 99.6 2.1E-14 7.1E-19 159.4 18.3 134 300-459 294-460 (549)
17 2v7b_A Benzoate-coenzyme A lig 99.6 8.7E-14 3E-18 153.5 22.1 129 303-459 301-450 (529)
18 1mdb_A 2,3-dihydroxybenzoate-A 99.6 6.8E-14 2.3E-18 155.0 20.9 132 301-459 297-451 (539)
19 3ivr_A Putative long-chain-fat 99.6 1.7E-14 5.9E-19 158.3 14.6 133 301-460 271-422 (509)
20 1t5h_X 4-chlorobenzoyl COA lig 99.6 1.3E-13 4.6E-18 151.1 21.3 133 301-459 271-423 (504)
21 3nyq_A Malonyl-COA ligase; A/B 99.5 2.4E-13 8.2E-18 149.5 22.4 192 302-536 272-487 (505)
22 3c5e_A Acyl-coenzyme A synthet 99.5 3.1E-13 1.1E-17 150.9 23.2 131 301-459 321-477 (570)
23 3rix_A Luciferase, luciferin 4 99.5 4.2E-14 1.4E-18 156.9 15.9 134 301-460 306-461 (550)
24 3ite_A SIDN siderophore synthe 99.5 2.3E-14 7.8E-19 159.3 13.5 134 300-460 292-449 (562)
25 3gqw_A Fatty acid AMP ligase; 99.5 2.6E-13 8.8E-18 150.6 21.3 132 301-460 298-483 (576)
26 1amu_A GRSA, gramicidin synthe 99.5 3.1E-13 1E-17 150.7 20.6 132 301-459 292-451 (563)
27 1pg4_A Acetyl-COA synthetase; 99.5 2.6E-13 9E-18 154.0 19.6 228 301-579 377-646 (652)
28 3r44_A Fatty acyl COA syntheta 99.5 1.5E-13 5.2E-18 151.4 17.2 129 301-459 283-434 (517)
29 4gr5_A Non-ribosomal peptide s 99.5 7.1E-14 2.4E-18 155.9 14.2 133 301-460 325-491 (570)
30 1ry2_A Acetyl-coenzyme A synth 99.5 3E-13 1E-17 153.9 18.5 229 301-576 383-659 (663)
31 3ipl_A 2-succinylbenzoate--COA 99.5 1.4E-12 4.6E-17 142.8 22.7 124 303-460 275-420 (501)
32 3rg2_A Enterobactin synthase c 99.5 2.5E-13 8.6E-18 153.0 17.1 133 300-459 300-455 (617)
33 3o83_A Peptide arylation enzym 99.5 6.4E-14 2.2E-18 155.4 11.5 133 301-460 306-461 (544)
34 3tsy_A Fusion protein 4-coumar 99.4 9.4E-13 3.2E-17 156.0 17.2 134 301-460 343-503 (979)
35 4dg8_A PA1221; ANL superfamily 99.4 2.4E-12 8.2E-17 145.3 18.0 133 301-459 275-440 (620)
36 4gs5_A Acyl-COA synthetase (AM 99.4 1.9E-12 6.6E-17 136.3 15.6 123 301-461 147-273 (358)
37 2vsq_A Surfactin synthetase su 99.4 1.1E-11 3.7E-16 151.1 23.2 131 302-459 720-882 (1304)
38 1v25_A Long-chain-fatty-acid-C 99.4 3.1E-12 1.1E-16 141.7 14.7 130 302-460 293-457 (541)
39 3t5a_A Long-chain-fatty-acid-- 98.8 2.6E-08 9E-13 107.7 13.2 109 300-436 309-480 (480)
40 3lax_A Phenylacetate-coenzyme 97.7 6.9E-05 2.3E-09 64.7 7.1 90 436-541 2-93 (109)
41 3gxs_A Phenylacetate-coenzyme 97.5 0.00016 5.5E-09 62.5 7.0 90 435-541 1-93 (109)
42 2qmx_A Prephenate dehydratase; 30.7 1.8E+02 0.0063 28.7 9.2 56 450-510 211-266 (283)
43 3onr_A Protein transport prote 29.1 1.9E+02 0.0066 22.6 7.0 47 447-494 16-63 (72)
44 2cc6_A VNG1446H, dodecin; flav 26.4 2.2E+02 0.0074 22.1 6.8 47 447-494 14-61 (68)
45 2m0n_A Putative uncharacterize 23.6 95 0.0032 26.5 4.7 54 239-293 41-100 (112)
46 3ol3_A Putative uncharacterize 21.9 86 0.0029 26.6 4.0 54 239-293 44-100 (107)
47 2fyx_A Transposase, putative; 21.6 2.8E+02 0.0096 23.9 7.8 51 449-511 42-92 (143)
48 2kvc_A Putative uncharacterize 21.3 1E+02 0.0035 25.9 4.3 51 239-293 39-91 (103)
49 2qmw_A PDT, prephenate dehydra 20.6 3.6E+02 0.012 26.3 9.0 55 450-510 200-254 (267)
No 1
>4epl_A Jasmonic acid-amido synthetase JAR1; ANL adenylating enzyme, acyl acid-amido synthetase, adenylat ligase; HET: JAI; 2.01A {Arabidopsis thaliana}
Probab=100.00 E-value=2.4e-129 Score=1077.81 Aligned_cols=570 Identities=68% Similarity=1.164 Sum_probs=524.8
Q ss_pred cccccccccChHHHHHHHHHHHhcHHHHHHHHHHHHHHhcCCChhhhhcCCCCC-CChh-hhhhcCCCcccccchHHHHH
Q 007815 9 KMLEKMETVDVDELIEEFETITKDAERIQRETLRKILEENASAEYLQNLGLNGR-TDPE-SFKSCVPLVTHEDLQPYIQR 86 (588)
Q Consensus 9 ~~~~~~~~~~~~~~~~~f~~~~~~~~~~Q~~~L~~iL~~~~~T~ygr~~gf~~i-~t~e-df~~~vPi~~Yed~~p~ieR 86 (588)
-|.+|++.++++..++.|++.|+||.++|+++|++||+.|++|+|||+|||++| +|++ |||++|||++|||++|||||
T Consensus 6 ~~~~~~~~~~~~~~~~~~e~~~~~~~~vQ~~vL~~iL~~n~~Teygk~~gf~~i~~~~e~dF~~~VPi~~Yedl~pyIeR 85 (581)
T 4epl_A 6 RMLEKVETFDMNRVIDEFDEMTRNAHQVQKQTLKEILLKNQSAIYLQNCGLNGNATDPEEAFKSMVPLVTDVELEPYIKR 85 (581)
T ss_dssp -------CCCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHTTTCHHHHTTTCC----CHHHHHHHHSCCBCHHHHHHHHHH
T ss_pred hhhhcccccccHHHHHHHHHHHcCHHHHHHHHHHHHHHHhccCHHHHhcCCCcccCCHHHHHHHhCCCccHHHHHHHHHH
Confidence 466899999999999999999999999999999999999999999999999999 9999 99999999999999999999
Q ss_pred HhcCCCCCCccCCCcceeeccccCCCCCcccccCChHHHHHHHHHHHHHHHHHhccCC-CC-CCceEEEeecccccccCC
Q 007815 87 IIDGDISPILTGKPITTISRSSGTTQGKPKFLPFNDELMETTLQIFRTSYAFRNREFP-IG-KGKALQFIYGSKQSKTKG 164 (588)
Q Consensus 87 ~~~Ge~~~ll~~~pi~~f~~TSGTT~G~~K~iP~t~~~~~~~~~~~~~~~~~~~~~~p-~~-~gk~l~~~~~~~~~~t~~ 164 (588)
|++||.++|||++||.+|++|||||+|++|+||+|+++++.+++++.+|+.++++ +| +. .||.|+|++++.+..|++
T Consensus 86 i~~Ge~~~iL~~~pi~~f~~SSGTT~gk~K~IP~T~~~l~~~~~~~~~~~~~~~~-~p~l~~~Gk~L~l~~~s~~~~t~~ 164 (581)
T 4epl_A 86 MVDGDTSPILTGHPVPAISLSSGTSQGRPKFIPFTDELMENTLQLFRTAFAFRNR-DFPIDDNGKALQFIFSSKQYISTG 164 (581)
T ss_dssp HHTTCCSSSSSSSCCSEEEEEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHH-HSCCCTTCEEEEECCCCCCEECTT
T ss_pred HHCCCCCCccCCCCcceEEecCCCCCCCccccccCHHHHHHHHHHHHHHHHHHhh-CCccccCCcEEEEeecCCcccCCC
Confidence 9999978999999999999999999999999999999999887777788888876 55 88 899999888999999999
Q ss_pred CCeEeccccccccCchhhhhhhhhhhccCCCcccccCCChHHHHHHHHHhcccccCCcceEeccchhHHHHHHHHHHHHH
Q 007815 165 GLNAGTATTNVYRSSTFKAEMKAMQSQCCSPDEVIFGPDFHQSLYCHLLCGLIFREEIQLVFSTFAHSLVHAFRTFELVW 244 (588)
Q Consensus 165 Gi~~g~~S~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~d~~~~~Y~~Ll~aL~~~~~l~~i~~~f~~~ll~~~~~l~~~w 244 (588)
|+|+|++|++++++.+|+..|.|+...|++|.+++.++|..+++||||||||.++++|..|+++||++|+.+++.++++|
T Consensus 165 Gi~~G~~S~~~~~s~~f~~~p~~~~~~~t~P~e~i~~~D~~~~~Y~~Ll~~L~~~~~v~~i~a~fas~ll~~~~~l~~~W 244 (581)
T 4epl_A 165 GVPVGTATTNVYRNPNFKAGMKSITSPSCSPDEVIFSPDVHQALYCHLLSGILFRDQVQYVFAVFAHGLVHAFRTFEQVW 244 (581)
T ss_dssp SCEEECHHHHHHTSTTHHHHHGGGSCCBSSCHHHHTCSCHHHHHHHHHHHHHHTGGGEEEEEEEEHHHHHHHHHHHHHHH
T ss_pred CceeeechhhhhhcchhhcCchhhhhcccCCHHHhcCCCHHHHHHHHHHHhhhccccccEEeeccHHHHHHHHHHHHHHH
Confidence 99999999999999999999999888899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcccCCCCCchHHHHHhhccCCCCHHHHHHHHHHhcCCCCCCCCccccCCCCceeeEEeecCcHHHHHHHHH
Q 007815 245 EELCDDIREGVLSSRITVPSIRAAMSKILKPNPELADLIHKKCSGLSNWYGLIPELFPNAKYLSGIMTGSMEHYLKKLRH 324 (588)
Q Consensus 245 ~~lv~dI~~g~~~~~~~~~~ir~~l~~~l~~~p~~A~~L~~~~~~~~g~~~~~~~lwP~L~~i~~~~~g~~~~~~~~l~~ 324 (588)
+++|+||++|+++++++++++|+++++.|+|+|++|++|+++|++.++|+|++++|||||++|.||++|+|.+|++++++
T Consensus 245 e~l~~dI~~gtl~~~it~~~~R~~l~~v~~p~~~~a~~l~~~~~~~~~~~g~i~~lWPnl~~i~~~~~G~~~~Y~~~l~~ 324 (581)
T 4epl_A 245 EEIVTDIKDGVLSNRITVPSVRTAMSKLLTPNPELAETIRTKCMSLSNWYGLIPALFPNAKYVYGIMTGSMEPYVPKLRH 324 (581)
T ss_dssp HHHHHHHHHTCCCTTCCCHHHHHHHHTTCCCCHHHHHHHHHHHHHSSTTTTHHHHHCTTCCCEEEECSGGGGGGHHHHHH
T ss_pred HHHHHHHHhcCCCcCCCCHHHHHHHhCCCCCCHHHHHHHHHHhCCCCccccCHHHhCCCCceEEEEeCCChHHHHHHHHH
Confidence 99999999999999999999999999999999999999999998722489999999999999999999999999999999
Q ss_pred HhCCCCeeccccccCcccceecCCCCCCCcccceeeccCceEEEEEeCCCCCcccccccCCCccccccccCCCCeEEEEE
Q 007815 325 YAGDLPLMSADYGSSEGWIGANVNPSLPPELATFAVLPNIGYFEFIPQRLGNLESQVLCIEPKPVGLTEVKVGEEYEIIV 404 (588)
Q Consensus 325 ~~g~~~v~~~~YgaSEg~~~~~~~~~~~~~~~~~~l~~~~~~~Efip~~~~~~~~~~~~~~~~~l~~~eve~G~~yELVv 404 (588)
++|++|+++.+|+||||++|+|+++.++++..+|+++|+.+||||||.+ +.++ +++++++++||++|++|||||
T Consensus 325 ~~g~~p~~~~~Y~ASEg~~gi~~~p~~~~~~~~~~L~p~~~ffEFiP~~--~~~~----~~~~~v~l~eve~G~~Yelvi 398 (581)
T 4epl_A 325 YAGDLPLVSHDYGSSEGWIAANVTPRLSPEEATFAVIPNLGYFEFLPVS--ETGE----GEEKPVGLTQVKIGEEYEVVI 398 (581)
T ss_dssp HHTTSCEEECCEEETTEEEEECCCTTSCTTTCCEEECTTSCEEEEEEC-------------CCCEEGGGCCTTCEEEEEE
T ss_pred HcCCCccccCceeccceeeeeecCCCCCccccceeecCCcEEEEEEecc--cccC----CCCceeeHHHcCCCCeEEEEE
Confidence 9989999999999999999999999998777789999999999999987 5443 467899999999999999999
Q ss_pred ccccceeecccCCEEEEeceeCCCCEEEEEeecCceeeeeeeecCHHHHHHHHHHHHHHhhhcCCeeEeeEEeecCCCCC
Q 007815 405 TNVAGLYRYRLGDVVKVMGFHNSTPELKFICRRNLLLTINIDKNTEKDLQLSVDEAAQLLAEEKQEVVDFTSHVDLSTDP 484 (588)
Q Consensus 405 Tt~~Gl~RYr~GDvv~v~~~~~~~P~i~f~gR~~d~i~~~Gekv~e~~v~~al~~~~~~l~~~g~~l~~f~~~~~~~~~~ 484 (588)
||.+||||||+||+|+|+|++|++|+|+|+||++++||++||||+|.+|++||.+|+..|+++|+.|.|||+.+|.++.|
T Consensus 399 Tt~~GL~RYr~GD~v~v~g~~~~~p~~~~~gR~~~~l~~~Ge~~~~~~v~~al~~a~~~l~~~~~~l~eft~~~d~~~~p 478 (581)
T 4epl_A 399 TNYAGLYRYRLGDVVKVIGFYNNTPQLKFICRRNLILSINIDKNTERDLQLSVESAAKRLSEEKIEVIDFSSYIDVSTDP 478 (581)
T ss_dssp ESTTSCSSEEEEEEEEEEEEETTEEEEEEEEETTCCBCSSSCCBCHHHHHHHHHHHHHHHHTTTCCEEEEEEEEECSSSS
T ss_pred eeccceeeEEcCCEEEEecccCCCcEEEEEeecCCeEEeeeeECCHHHHHHHHHHHHHhhcccCCeEEEEEEecCCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999988877899999999999888889
Q ss_pred ceEEEEEEeccCCCHHHHHHHHHHHHHhccChhhHHHhhcCCcCCeEEEEeccchHHHHHHHHhcCCCCCCCCCCCccc-
Q 007815 485 GHYVIFWEVSGEVNDEVLKECCNCLDRSFVDAGYVSARKVNAIGPLELRVVLKGTFQQILDHYLGLGAALSQFKTPRCV- 563 (588)
Q Consensus 485 ~~y~~~vE~~~~~~~~~l~~~~~~ld~~L~n~~Y~~~R~~g~l~p~~v~~v~~gtf~~~~~~~~~~G~~~~Q~K~Pr~~- 563 (588)
|||++|||+.+.++.+.+++||..||++|.|++|+.+|+.++|+|++|++|++|+|++|+++++++|++++|||+|||+
T Consensus 479 ~hyv~~wE~~~~~~~~~l~~~~~~Ld~~L~n~~Y~~~R~~~~L~pl~v~~v~~G~F~~l~~~~~~~G~~~~Q~K~PR~~~ 558 (581)
T 4epl_A 479 GHYAIFWEISGETNEDVLQDCCNCLDRAFIDAGYVSSRKCKTIGALELRVVAKGTFRKIQEHFLGLGSSAGQFKMPRCVK 558 (581)
T ss_dssp CEEEEEEEESSCCCHHHHHHHHHHHHHHCCCHHHHHHHHHTSSCCCEEEEECTTHHHHHHHHHHTTC------CCCSSCC
T ss_pred CcEEEEEeecCCCCHHHHHHHHHHHHHHhCChhHHHHHhcCCCCCcEEEEeCcchHHHHHHHHHhCCCCCCCcCCCeeec
Confidence 9999999997777778899999999999779999999999999999999999999999999999999999999999999
Q ss_pred -CCCCHHHHHHHhcccceeecccCC
Q 007815 564 -GPTNKTVLQILCNNIGKSYFSTAY 587 (588)
Q Consensus 564 -~~~~~~~~~~l~~~~~~~~~~~~~ 587 (588)
+ +++++++|+++||++|+|+++
T Consensus 559 ~~--~~~~~~~L~~~v~~~~~s~~~ 581 (581)
T 4epl_A 559 PS--NAKVLQILCENVVSSYFSTAF 581 (581)
T ss_dssp TT--CHHHHHHHHTTEEEEEECCCC
T ss_pred CC--CHHHHHHHHhcccccccCCCC
Confidence 8 999999999999999999986
No 2
>4b2g_A GH3-1 auxin conjugating enzyme; signaling protein, ignaling protein, adenylate, amino acid conjugation, plant growth; HET: V1N; 2.40A {Vitis vinifera}
Probab=100.00 E-value=2.1e-126 Score=1057.90 Aligned_cols=570 Identities=40% Similarity=0.723 Sum_probs=516.1
Q ss_pred ccccccChHHHHHHHHHHHhcHHHHHHHHHHHHHHhcCCChhhhhcCCCCCCChhhhhhcCCCcccccchHHHHHHhcCC
Q 007815 12 EKMETVDVDELIEEFETITKDAERIQRETLRKILEENASAEYLQNLGLNGRTDPESFKSCVPLVTHEDLQPYIQRIIDGD 91 (588)
Q Consensus 12 ~~~~~~~~~~~~~~f~~~~~~~~~~Q~~~L~~iL~~~~~T~ygr~~gf~~i~t~edf~~~vPi~~Yed~~p~ieR~~~Ge 91 (588)
+.+..++++..++.|++.|+||.++|+++|++||++|++|+|||+|||++|+|++||+++|||++|||++||||||++||
T Consensus 12 ~~~~~~~~~~~l~~~e~~~~~~~~~Q~~~L~~lL~~~~~T~~gr~~gf~~i~~~~dF~~~VPv~~Yedl~p~ieRi~~Ge 91 (609)
T 4b2g_A 12 GPAASEKDAKALQFIEEMTRNADSVQERVLAEILSRNGETEYLKRFKLEGSTVRETFKSKIPVIKYEDLQPEIQRIANGD 91 (609)
T ss_dssp ----CHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHSTTSHHHHTTCCTTCCSHHHHHHHSCCBCHHHHHHHHHHHHTTC
T ss_pred hhhcccchHHHHHHHHHHHcCHHHHHHHHHHHHHHHhcCChHHHhcCCCCCCCHHHHHHhCCCccHHHHHHHHHHHhcCC
Confidence 44456677788999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCccCCCcceeeccccCCCCCcccccCChHHHHHHHHHHHHHHHHHhccCC-CCCCceEEEeecccccccCCCCeEec
Q 007815 92 ISPILTGKPITTISRSSGTTQGKPKFLPFNDELMETTLQIFRTSYAFRNREFP-IGKGKALQFIYGSKQSKTKGGLNAGT 170 (588)
Q Consensus 92 ~~~ll~~~pi~~f~~TSGTT~G~~K~iP~t~~~~~~~~~~~~~~~~~~~~~~p-~~~gk~l~~~~~~~~~~t~~Gi~~g~ 170 (588)
.++|||++||.+|.+|||||+|++|+||+|+++++.++.++.+|..++++++| ++.||.|++.+++.+..|++|+|+|+
T Consensus 92 ~~~il~~~~i~~f~~SSGTT~gk~K~IP~t~~~l~~~~~~~~~~~~~~~~~~p~~~~Gk~l~l~~~~~~~~t~~Gi~~g~ 171 (609)
T 4b2g_A 92 RSAILSAHPISEFLTSSGTSAGERKLMPTIQEELDRRQMLYSLLMPVMNLYVPGLDKGKGLYFLFVKSETRTPGGLLARP 171 (609)
T ss_dssp CSSSSCSSCCCEEEEEEEEETTEEEEEEECTTHHHHHHHHHHHHHHHHHHHSCCGGGSEEEECCCCCCCEECTTSCEEEC
T ss_pred CCCccCCCCCCeEEeCCCCCCCCceeeecCHHHHHHHHHHHHHHHHHHHhcCCcccCCCeEEEcccCCcccCCCCccccc
Confidence 77999999999999999999999999999999999877778899999999999 78899999888888999999999999
Q ss_pred cccccccCchhhhhhhhhhhccCCCcccccCCChHHHHHHHHHhcccccCCcceEeccchhHHHHHHHHHHHHHHHHHHH
Q 007815 171 ATTNVYRSSTFKAEMKAMQSQCCSPDEVIFGPDFHQSLYCHLLCGLIFREEIQLVFSTFAHSLVHAFRTFELVWEELCDD 250 (588)
Q Consensus 171 ~S~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~d~~~~~Y~~Ll~aL~~~~~l~~i~~~f~~~ll~~~~~l~~~w~~lv~d 250 (588)
+|++++++.+|+..|......|++|.+++.++|..+++||||||||.++++|+.|+++|+++++.++++|+++|+++|+|
T Consensus 172 ~s~~~~~s~~f~~~p~~~~~~~~sP~~~i~~~D~~~~~Y~~Ll~~L~~~~~v~~lsa~fa~~ll~~~~~L~~~Weel~~d 251 (609)
T 4b2g_A 172 VLTSYYKSEHFKTRPYDPYNVYTSPNEAILCADSFQSMYTQMLCGIYERKQVLRLGAVFASGLLRAIRFLQLNWHQLTHD 251 (609)
T ss_dssp HHHHHHTSHHHHTCCCCTTCCBSSCHHHHHCSCHHHHHHHHHHHHHHTGGGEEEEEEEEHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhhhhccchhhccccchhhcccCcHHHhcCcCHHHHHHHHHHHHhhcccccceeeehhHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999888765567899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcccCCCCCchHHHHHhhccCCCCHHHHHHHHHHhcCCCCCCCCccccCCCCceeeEEeecCcHHHHHHHHHHhCCCC
Q 007815 251 IREGVLSSRITVPSIRAAMSKILKPNPELADLIHKKCSGLSNWYGLIPELFPNAKYLSGIMTGSMEHYLKKLRHYAGDLP 330 (588)
Q Consensus 251 I~~g~~~~~~~~~~ir~~l~~~l~~~p~~A~~L~~~~~~~~g~~~~~~~lwP~L~~i~~~~~g~~~~~~~~l~~~~g~~~ 330 (588)
|++|+++++++++++|.++.+.++|+|++|++|+++|++. +|.|++++|||||++|+||++|||++|++.+++++|++|
T Consensus 252 I~~gtl~~~it~~~~r~a~~~~lsp~~~la~~l~~~~~~~-~~~g~i~~lWPnlk~l~~~~tG~~~~Y~~~l~~~~g~~p 330 (609)
T 4b2g_A 252 IRTGTLSPKITDPSVRNCVAGVLKPDPELADLVAGECSKD-NWEGIITRIWPNTKYLDVIVTGAMAQYIPTLDYYSGGLP 330 (609)
T ss_dssp HHHTCCCTTCCCHHHHHHTTTTCCCCHHHHHHHHHHHTSS-CCTTTHHHHSTTCCEEEEECSGGGGGGHHHHHHHHTSCC
T ss_pred HHhccCCcCCCCHHHHHHHhcCCCcCHHHHHHHHHHhCCC-ccccCHHHhCCCCcEEEEEccCChHHHHHHHHHHcCCCc
Confidence 9999999999999999999999999999999999999985 699999999999999999999999999999999998999
Q ss_pred eeccccccCcccceecCCCCCCCcccceeeccCceEEEEEeCCCCCccccc-ccCCCccccccccCCCCeEEEEEccccc
Q 007815 331 LMSADYGSSEGWIGANVNPSLPPELATFAVLPNIGYFEFIPQRLGNLESQV-LCIEPKPVGLTEVKVGEEYEIIVTNVAG 409 (588)
Q Consensus 331 v~~~~YgaSEg~~~~~~~~~~~~~~~~~~l~~~~~~~Efip~~~~~~~~~~-~~~~~~~l~~~eve~G~~yELVvTt~~G 409 (588)
+++.+|+||||++|+|+++.|+++..+|+++||.+||||||.+ +.+... ..+++++++++||++|++|||||||++|
T Consensus 331 ~~~~~Y~ASEg~~gi~~~p~~~p~~~~~~L~p~~~ffEFIP~~--~~~~~~~~~~~~~~v~l~eVe~G~~YelViTt~~G 408 (609)
T 4b2g_A 331 LACTMYASSECYFGLNLNPMSKPSEVSYTIMPNMAYFEFLPHE--HSSIPLSRDSPPRLVDLAHVEVGKEYELVITTYAG 408 (609)
T ss_dssp EECCEEECSSCEEEECSCTTSCGGGCCEEECTTSCEEEEEEGG--GTTSCCCSSSCCCCEEGGGCCTTCEEEEEEECTTS
T ss_pred cccCcccccceeeeeecCCCCCcccCceeecCCcEEEEEEecc--ccccccccCCCCccccHhHcCCCCeEEEehhhhhh
Confidence 9999999999999999999998777899999999999999987 431000 1156889999999999999999999999
Q ss_pred eeecccCCEEEEeceeCCCCEEEEEeecCceeeeeeeecCHHHHHHHHHHHHHHhhhcCCeeEeeEEeecCCCCCceEEE
Q 007815 410 LYRYRLGDVVKVMGFHNSTPELKFICRRNLLLTINIDKNTEKDLQLSVDEAAQLLAEEKQEVVDFTSHVDLSTDPGHYVI 489 (588)
Q Consensus 410 l~RYr~GDvv~v~~~~~~~P~i~f~gR~~d~i~~~Gekv~e~~v~~al~~~~~~l~~~g~~l~~f~~~~~~~~~~~~y~~ 489 (588)
|||||+||+|+|+||++++|+|+|+||++|+||++||||+|.+|++||.+|++.|+.+|+.|.|||+.+|.++.||||++
T Consensus 409 L~RYr~GD~v~v~~f~~~~p~i~~~gR~~~~l~~~Geki~~~~v~~av~~a~~~l~~~g~~l~eft~~~d~~~~p~Hyv~ 488 (609)
T 4b2g_A 409 LYRYRVGDILRVTGFHNSAPQFHFVRRKNVLLSIDSDKTDEAELQKAVDNASKLLREVNTSVVEYTSFADTKTIPGHYVI 488 (609)
T ss_dssp CCSEEEEEEEEEEEEETTEEEEEEEEETTCCBCSSSCCBCHHHHHHHHHHHHHGGGGTTEEEEEEEEEEECSSSSCEEEE
T ss_pred hhheecCCEEEEeecCCCCcEEEEEEecCCeEEccccCCCHHHHHHHHHHHHHhhhccCCeEEEEEEecCCCCCCCcEEE
Confidence 99999999999999999999999999999999999999999999999999997776789999999999988888999999
Q ss_pred EEEec-----cCCCHHHHHHHHHHHHHhccChhhHHHh-hcCCcCCeEEEEeccchHHHHHHHHhcCCCCCCCCCCCccc
Q 007815 490 FWEVS-----GEVNDEVLKECCNCLDRSFVDAGYVSAR-KVNAIGPLELRVVLKGTFQQILDHYLGLGAALSQFKTPRCV 563 (588)
Q Consensus 490 ~vE~~-----~~~~~~~l~~~~~~ld~~L~n~~Y~~~R-~~g~l~p~~v~~v~~gtf~~~~~~~~~~G~~~~Q~K~Pr~~ 563 (588)
|||+. ..++++.+++||..||++| |++|+.+| +.++|+|++|++|++|+|.+|+++++++|++++|+|+|||+
T Consensus 489 ~wEl~~~~~~~~~~~~~l~~~~~~LD~~L-N~~Y~~~R~~~~~L~pl~v~~v~~GtF~~~~~~~~~~G~~~gQ~K~PR~~ 567 (609)
T 4b2g_A 489 YWELLVKDSANSPSDELLGQCCLAMEESL-NSVYRQGRVADNSIGPLEIRVVKSGTFEELMDYAISRGASINQYKVPRCV 567 (609)
T ss_dssp EEEEEESCGGGCCCHHHHHHHHHHHHHHS-CHHHHHHHHTSCCSCCCEEEEECTTCSCC----------------CCSSC
T ss_pred EEEEecccccCCCCHHHHHHHHHHHHHHh-CHHHHHHhhcCCccCCcEEEEeCCCcHHHHHHHHHhCCCCCCCcCCCccc
Confidence 99995 2356789999999999998 99999999 55699999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHhcccceeecccCC
Q 007815 564 GPTNKTVLQILCNNIGKSYFSTAY 587 (588)
Q Consensus 564 ~~~~~~~~~~l~~~~~~~~~~~~~ 587 (588)
+ +++++++|+++||++|+|+++
T Consensus 568 ~--~~~~~~~L~~~v~~~~~s~~~ 589 (609)
T 4b2g_A 568 N--FTPIMELLDSRVVSSHFSPAL 589 (609)
T ss_dssp C----CCHHHHHTTEEEEEECCSC
T ss_pred C--CHHHHHHHHhcccccccCCCC
Confidence 9 999999999999999999986
No 3
>4eql_A 4-substituted benzoates-glutamate ligase GH3.12; firefly luciferase family, acyl adenylase, amino acid conjug ligase; HET: AMP SAL; 1.80A {Arabidopsis thaliana} PDB: 4epm_A* 4eq4_A* 4ewv_A*
Probab=100.00 E-value=3.2e-125 Score=1047.28 Aligned_cols=554 Identities=40% Similarity=0.708 Sum_probs=466.4
Q ss_pred ChHHHHHHHHHHHhcHHHHHHHHHHHHHHhcCCChhhhhcCCCCCCChhhhhhcCCCcccccchHHHHHHhcCCCCCCcc
Q 007815 18 DVDELIEEFETITKDAERIQRETLRKILEENASAEYLQNLGLNGRTDPESFKSCVPLVTHEDLQPYIQRIIDGDISPILT 97 (588)
Q Consensus 18 ~~~~~~~~f~~~~~~~~~~Q~~~L~~iL~~~~~T~ygr~~gf~~i~t~edf~~~vPi~~Yed~~p~ieR~~~Ge~~~ll~ 97 (588)
+++..++.|++.++||.++|+++|++||+.|++|+|||+| |++|++++|||++|||++|||++||||||++||.++|||
T Consensus 13 ~~~~~~~~~e~~~~~~~~vQ~~vL~~iL~~n~~Teygk~~-f~~i~~~~~F~~~VPi~~Yedl~pyIeRi~~Ge~~~iL~ 91 (581)
T 4eql_A 13 INETFEKQLKDLTSNVKSIQDNLLEEIITPNTKTEYLQRF-LIDRFDKELFKKNVPIVSYEDIKPYLDRVVNGESSDVIS 91 (581)
T ss_dssp -CHHHHHHHHHHHHCHHHHHHHHHHHHHHHHTTSHHHHHT-TCCSCCHHHHHHHSCCBCHHHHHHHHHHHHTTCCGGGTC
T ss_pred CcHHHHHHHHHHHcCHHHHHHHHHHHHHHhhccCHHHHHH-hhcCCCHHHHHHhCCCccHHHHHHHHHHHHcCCCCcccC
Confidence 4457789999999999999999999999999999999999 999999999999999999999999999999999669999
Q ss_pred CCCcceeeccccCCCCCcccccCChHHHHHHHHHHHHHHHHHhccCC-CCCCceEEEeecccccccCCCCeEeccccccc
Q 007815 98 GKPITTISRSSGTTQGKPKFLPFNDELMETTLQIFRTSYAFRNREFP-IGKGKALQFIYGSKQSKTKGGLNAGTATTNVY 176 (588)
Q Consensus 98 ~~pi~~f~~TSGTT~G~~K~iP~t~~~~~~~~~~~~~~~~~~~~~~p-~~~gk~l~~~~~~~~~~t~~Gi~~g~~S~~~~ 176 (588)
++||.+|++|||||+|++|+||+|+++++.+++++.+|..++++++| +..||.|++++.+.+.+|++|+|+|++|++++
T Consensus 92 ~~pi~~F~~SSGTT~g~~K~IP~T~e~l~~~~~~~~~~~~~~~~~~p~~~~Gk~l~l~~~~~~~~t~~G~~~g~~s~~~~ 171 (581)
T 4eql_A 92 ARTITGFLLSSGTSGGAQKMMPWNNKYLDNLTFIYDLRMQVITKHVKGVEEGKGMMFLFTKQESMTPSGLPARVATSSYF 171 (581)
T ss_dssp SSCCCEEEEEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHCCSCTTSEEEECCCCCCCEECTTSCEEECHHHHHH
T ss_pred CCCCCeEEeCCCCCCCCccccccCHHHHHHHHHHHHHHHHHHHhcCCccccCCEEEEeccCCcccCCCCeeecccchhhh
Confidence 99999999999999899999999999999887788899999999999 88899999888888899999999999999999
Q ss_pred cCchhhhhhhhhhhccCCCcccccCCChHHHHHHHHHhcccccCCcceEeccchhHHHHHHHHHHHHHHHHHHHHHhccc
Q 007815 177 RSSTFKAEMKAMQSQCCSPDEVIFGPDFHQSLYCHLLCGLIFREEIQLVFSTFAHSLVHAFRTFELVWEELCDDIREGVL 256 (588)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~P~~~~~~~d~~~~~Y~~Ll~aL~~~~~l~~i~~~f~~~ll~~~~~l~~~w~~lv~dI~~g~~ 256 (588)
++.+|+.+|......|++|.+++.++|..+++||||||||.++++|+.|+++|+++++.+++.|+++|+++|+||++|++
T Consensus 172 ~~~~f~~~p~~~~~~~~~P~~~i~~~d~~~~~Y~~ll~~L~~~~~v~~isa~fa~~ll~~~~~L~~~weel~~dI~~gtl 251 (581)
T 4eql_A 172 KSDYFKNRPSNWYYSYTSPDEVILCPNNTESLYCHLLCGLVQRDEVVRTGSIFASVMVRAIEVLKNSWEELCSNIRSGHL 251 (581)
T ss_dssp TSHHHHTCCCSGGGCBSSCHHHHHCSCHHHHHHHHHHHHHHTGGGEEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHTCC
T ss_pred hcchhhcccchhhhcccCchHhhcCCCHHHHHHHHHHHHhhcccccceeeehhHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 99999888855567899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCchHHHHHhhccCC-CCHHHHHHHHHHhcCCCCCCCCccccCCCCceeeEEeecCcHHHHHHHHHHhCCCCeeccc
Q 007815 257 SSRITVPSIRAAMSKILK-PNPELADLIHKKCSGLSNWYGLIPELFPNAKYLSGIMTGSMEHYLKKLRHYAGDLPLMSAD 335 (588)
Q Consensus 257 ~~~~~~~~ir~~l~~~l~-~~p~~A~~L~~~~~~~~g~~~~~~~lwP~L~~i~~~~~g~~~~~~~~l~~~~g~~~v~~~~ 335 (588)
+++++++++|.++..+++ |||++|++|+++|++. +|.|++++|||||++|+||++|||++|++.+++++|++|+++++
T Consensus 252 ~~~it~~~~r~~~~~~L~~P~p~~A~~l~~~~~~~-~~~g~i~~lWPnl~~l~~~~~G~~~~Y~~~l~~~~g~~p~~~~~ 330 (581)
T 4eql_A 252 SNWVTDLGCQNSVSLVLGGPRPELADTIEEICNQN-SWKGIVKRLWPNTKYIETVVTGSMGQYVPMLNYYCNDLPLVSTT 330 (581)
T ss_dssp CTTCCCHHHHHHHHHHHCSCCHHHHHHHHHHHTSS-CCTTHHHHHSTTCCEEEEECSGGGGGGHHHHHHHHTTCCEECCE
T ss_pred cccCcChHHHHHHHHHhcCCCHHHHHHHHHHhcCC-CccCCHHHhCCCCcEEEEEcCCChHHHHHHHHHHcCCCccccCc
Confidence 999999999999999997 9999999999999984 58999999999999999999999999999999999899999999
Q ss_pred cccCcccceecCCCCCCCcccceeeccCceEEEEEeCCCCCcccccccCCCccccccccCCCCeEEEEEccccceeeccc
Q 007815 336 YGSSEGWIGANVNPSLPPELATFAVLPNIGYFEFIPQRLGNLESQVLCIEPKPVGLTEVKVGEEYEIIVTNVAGLYRYRL 415 (588)
Q Consensus 336 YgaSEg~~~~~~~~~~~~~~~~~~l~~~~~~~Efip~~~~~~~~~~~~~~~~~l~~~eve~G~~yELVvTt~~Gl~RYr~ 415 (588)
|+||||++|+|+++.|+++..+|+++|+.+||||||.+ +. +++++++++|||.|++|||||||.+||||||+
T Consensus 331 Y~ASEg~~gi~~~p~~~~~~~~~~L~~~~~ffEFip~~--~~------~~~~~v~l~eVe~G~~YelViTt~~GL~RYr~ 402 (581)
T 4eql_A 331 YGSSETTFGINLDPLCKPEDVSYTFMPNMSYFEFIPMD--GG------DKNDVVDLEDVKLGCTYEPVVTNFAGLYRMRV 402 (581)
T ss_dssp EECSSCEEEECSCTTSCGGGCCEEECTTSSEEEEEECS--TT------CCSSCEEGGGCCTTCEEEEEEECSSSCCSEEC
T ss_pred cccccceeeeccCCCCCcccCceeecCCcEEEEEEecc--cc------CCCcEeCHHHcCCCceEEEEEeeccceeeEEc
Confidence 99999999999999998776789999999999999987 43 24789999999999999999999999999999
Q ss_pred CCEEEEeceeCCCCEEEEEeecCceeeeeeeecCHHHHHHHHHHHHHHhhhcCCeeEeeEEeecCCCCCceEEEEEEecc
Q 007815 416 GDVVKVMGFHNSTPELKFICRRNLLLTINIDKNTEKDLQLSVDEAAQLLAEEKQEVVDFTSHVDLSTDPGHYVIFWEVSG 495 (588)
Q Consensus 416 GDvv~v~~~~~~~P~i~f~gR~~d~i~~~Gekv~e~~v~~al~~~~~~l~~~g~~l~~f~~~~~~~~~~~~y~~~vE~~~ 495 (588)
||+|+|++|++++|+|+|+||.+|+||++||||+|.+|++||.+|++.|+++|++|.|||+.+|.++.||||++|||+..
T Consensus 403 GD~v~v~~f~~~~p~i~f~gR~~~~l~~~Gekl~~~~v~~al~~a~~~l~~~g~~l~eft~~~~~~~~p~Hy~~~wel~~ 482 (581)
T 4eql_A 403 GDIVLVTGFYNNAPQFKFVRRENVVLSIDSDKTNEEDLFKAVSQAKLVLESSGLDLKDFTSYADTSTFPGHYVVYLEVDT 482 (581)
T ss_dssp CEEEEEEEEETTEEEEEEEEETTEEECSSSCCEEHHHHHHHHHHC--------------CEEEECSSSSBEEEEECC---
T ss_pred CCEEEEcccCCCCcEEEEEEecCCEEEeeeeECCHHHHHHHHHHHHHhhhhcCCEEEEEEEecCCCCCCCeEEEEEEEec
Confidence 99999999999999999999999999999999999999999999986665789999999999988888999999999853
Q ss_pred -----------CCCHHHHHHHHHHHHHhccChhhHHHh-hcCCcCCeEEEEeccchHHHHHHHHhcCCCCCCCCCCCccc
Q 007815 496 -----------EVNDEVLKECCNCLDRSFVDAGYVSAR-KVNAIGPLELRVVLKGTFQQILDHYLGLGAALSQFKTPRCV 563 (588)
Q Consensus 496 -----------~~~~~~l~~~~~~ld~~L~n~~Y~~~R-~~g~l~p~~v~~v~~gtf~~~~~~~~~~G~~~~Q~K~Pr~~ 563 (588)
.++++.+++||..||++| |++|+.+| +.++|+||+|++|++|+|++|+++++++|++++|||+|||+
T Consensus 483 ~~~~~~~~~~~~~~~~~l~~~~~~LD~~L-N~~Y~~~R~~~~~L~pl~i~~v~~GtF~~~~~~~~~~G~~~gQ~K~PR~~ 561 (581)
T 4eql_A 483 KEGEEKETAQFELDEEALSTCCLVMEESL-DNVYKRCRFKDGSIGPLEIRVVRQGTFDSLMDFFISQGASTGQYKTPRCI 561 (581)
T ss_dssp ------------CCHHHHHHHHHHHHHTS-CHHHHHHHHTTCCBCCCEEEC-----------------------------
T ss_pred ccccccccccCCCCHHHHHHHHHHHHHHh-CHHHHHHHhcCCccCCcEEEEeCCCcHHHHHHHHHhCCCCCCCcCCCccc
Confidence 145578999999999998 99999999 56699999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHhcccceeecc
Q 007815 564 GPTNKTVLQILCNNIGKSYFS 584 (588)
Q Consensus 564 ~~~~~~~~~~l~~~~~~~~~~ 584 (588)
+ +++++++|+++||++|+|
T Consensus 562 ~--~~~~~~~L~~~v~~~~~s 580 (581)
T 4eql_A 562 K--SGKALQVLETCVVAKFFS 580 (581)
T ss_dssp -----------------CEEC
T ss_pred C--CHHHHHHHHhcchheeec
Confidence 9 999999999999999997
No 4
>3qov_A Phenylacetate-coenzyme A ligase; acetyl-COA synthetase-like, structural genomics, joint cente structural genomics, JCSG; HET: MSE ADP COA; 2.20A {Bacteroides thetaiotaomicron} PDB: 3s89_A*
Probab=99.91 E-value=6.4e-23 Score=221.29 Aligned_cols=377 Identities=15% Similarity=0.169 Sum_probs=223.3
Q ss_pred cHHHHHHHHHHHHHHhcCCChhhhhc----CCC--CCCChhhhhhcCCCcccccchHHHHHHhcCCCCCCccC---CCcc
Q 007815 32 DAERIQRETLRKILEENASAEYLQNL----GLN--GRTDPESFKSCVPLVTHEDLQPYIQRIIDGDISPILTG---KPIT 102 (588)
Q Consensus 32 ~~~~~Q~~~L~~iL~~~~~T~ygr~~----gf~--~i~t~edf~~~vPi~~Yed~~p~ieR~~~Ge~~~ll~~---~pi~ 102 (588)
+.++.|.+.|+++++..++++|+|++ |+. .|.+.+|++ ++|++++++++.... ...++. +.+.
T Consensus 18 ~~~~~q~~~L~~~l~~~~~~p~y~~~~~~~g~~~~~i~~~~dl~-~lP~~~~~~l~~~~p-------~~~~~~~~~~~~a 89 (436)
T 3qov_A 18 KLQELQLQRLKKTINIAANSPYYKEVFSKNGITGDSIQSLDDIR-KIPFTTKSDMRANYP-------FGLVAGDMKRDGV 89 (436)
T ss_dssp HHHHHHHHHHHHHHHHHTTSHHHHHHHHHTTCCTTSCSSSGGGG-GSCCBCHHHHHHTTT-------TTTCCSCHHHHEE
T ss_pred HHHHHHHHHHHHHHHHHHcCHHHHHHHHHcCCChhhCCCHHHHH-HCCCCCHHHHHhcCC-------CccccCCCcCCeE
Confidence 55789999999999877999999974 664 688999998 799999999875321 122221 3345
Q ss_pred eeeccccCCCCCcccccCChHHHHHHHHHHHHHHHHHhccCCCCCCceEEEeecccccccCCCCeEeccccccccCchhh
Q 007815 103 TISRSSGTTQGKPKFLPFNDELMETTLQIFRTSYAFRNREFPIGKGKALQFIYGSKQSKTKGGLNAGTATTNVYRSSTFK 182 (588)
Q Consensus 103 ~f~~TSGTT~G~~K~iP~t~~~~~~~~~~~~~~~~~~~~~~p~~~gk~l~~~~~~~~~~t~~Gi~~g~~S~~~~~~~~~~ 182 (588)
+...||||| |+||-++.|...+......+.. ....+.+..+..+. ...+ .+...+.
T Consensus 90 ~i~~TSGTT-G~PK~v~~th~~~~~~~~~~~~----~~~~~~~~~~d~~~-~~~~----------~~~~~~~-------- 145 (436)
T 3qov_A 90 RIHSSSGTT-GNPTVIVHSQHDLDSWANLVAR----CLYMVGIRKTDVFQ-NSSG----------YGMFTGG-------- 145 (436)
T ss_dssp EEEECSCSS-SCCCEEEEEHHHHHHHHHHHHH----HHHHTTCCTTSEEE-ECSC----------CTTCHHH--------
T ss_pred EEEECCCcC-CCCeEEEECHHHHHHHHHHHHH----HHHHcCCCCCCEEE-ECcc----------cccchhH--------
Confidence 778899999 9999999998876543322111 11112233332222 1100 0000000
Q ss_pred hhhhhhhhccCCCcccccCCChHHHHHHHHHhcccccCCcceEe-ccchhHHHHHHHHHHHHHHHHHHHHHhcccCCCCC
Q 007815 183 AEMKAMQSQCCSPDEVIFGPDFHQSLYCHLLCGLIFREEIQLVF-STFAHSLVHAFRTFELVWEELCDDIREGVLSSRIT 261 (588)
Q Consensus 183 ~~~~~~~~~~~~P~~~~~~~d~~~~~Y~~Ll~aL~~~~~l~~i~-~~f~~~ll~~~~~l~~~w~~lv~dI~~g~~~~~~~ 261 (588)
. ...+..+..+. ..+. ..+ +-+.+++.|++..+....
T Consensus 146 -~---------------------~~~~~~l~~G~------~~~~~~~~-------------~~~~~~~~i~~~~~t~~~- 183 (436)
T 3qov_A 146 -L---------------------GFQYGAERLGC------LTVPAAAG-------------NSKRQIKFISDFKTTALH- 183 (436)
T ss_dssp -H---------------------HHHHHHHHHTC------EEECCCSC-------------CHHHHHHHHHHHTCCEEE-
T ss_pred -H---------------------HHHHHHHHcCC------EEEeCCCC-------------CHHHHHHHHHHHCCCEEE-
Confidence 0 00011111111 0110 011 123445555555443211
Q ss_pred chHHHHHhhccCCCCHHHHHHHHHHhcCCCCCCCCccccCCCCceeeEEeecC---cHHHHHHHHHHhCCCCeecccccc
Q 007815 262 VPSIRAAMSKILKPNPELADLIHKKCSGLSNWYGLIPELFPNAKYLSGIMTGS---MEHYLKKLRHYAGDLPLMSADYGS 338 (588)
Q Consensus 262 ~~~ir~~l~~~l~~~p~~A~~L~~~~~~~~g~~~~~~~lwP~L~~i~~~~~g~---~~~~~~~l~~~~g~~~v~~~~Yga 338 (588)
..|..+..|.+...+. +. ..-+++++ .+++|| ....++++++.| |++++ +.||+
T Consensus 184 -------------~~P~~~~~l~~~~~~~----~~-~~~~~~lr---~i~~gGe~l~~~~~~~~~~~~-g~~v~-~~YG~ 240 (436)
T 3qov_A 184 -------------AIPSYAIRLAEVFQEE----GI-DPRETTLK---TLVIGAEPHTDEQRRKIERML-NVKAY-NSFGM 240 (436)
T ss_dssp -------------CCHHHHHHHHHHHHHT----TC-CTTSSSCC---EEEEESSCCCHHHHHHHHHHH-TSEEE-EEEEE
T ss_pred -------------ECHHHHHHHHHHHHHc----CC-CcccCCcc---EEEEeCCcCCHHHHHHHHHHh-CccEE-ecCcc
Confidence 1234444443332221 11 11246788 667776 366778888888 69999 99999
Q ss_pred Ccc-cceecCCCCCCCcccceeeccCceEEEEEeCCCCCcccccccCCCccccccccCCCCeEEEEEccc----cceeec
Q 007815 339 SEG-WIGANVNPSLPPELATFAVLPNIGYFEFIPQRLGNLESQVLCIEPKPVGLTEVKVGEEYEIIVTNV----AGLYRY 413 (588)
Q Consensus 339 SEg-~~~~~~~~~~~~~~~~~~l~~~~~~~Efip~~~~~~~~~~~~~~~~~l~~~eve~G~~yELVvTt~----~Gl~RY 413 (588)
||+ .+++...... ..++++..++..+|+++++ . +. .|++|+.|||+|++. ....||
T Consensus 241 TE~~~~~~~~~~~~---~~g~~~~~~~~~v~i~d~~--~---------g~-----~~~~g~~Gel~v~~~~~~~~~~~~y 301 (436)
T 3qov_A 241 TEMNGPGVAFECQE---QNGMHFWEDCYLVEIIDPE--T---------GE-----PVPEGEIGELVLTTLDREMMPLIRY 301 (436)
T ss_dssp GGGTEEEEEEECTT---CSSEEECTTTEEEEEECTT--T---------CS-----BCSTTCCEEEEEEESSCCSSCCCSE
T ss_pred hhhcCCeeEEecCC---CCeeEEccCceEEEEEECC--C---------CC-----CCCCCCceEEEEeccCcCCceEEEE
Confidence 997 3333322221 2457666677789998864 1 22 567899999999874 236699
Q ss_pred ccCCEEEEeceeCCC----CEE-EEEeecCceeeeeeeecCHHHHHHHHHHHHHHhhhcCCeeEeeEEeecCCCCCceEE
Q 007815 414 RLGDVVKVMGFHNST----PEL-KFICRRNLLLTINIDKNTEKDLQLSVDEAAQLLAEEKQEVVDFTSHVDLSTDPGHYV 488 (588)
Q Consensus 414 r~GDvv~v~~~~~~~----P~i-~f~gR~~d~i~~~Gekv~e~~v~~al~~~~~~l~~~g~~l~~f~~~~~~~~~~~~y~ 488 (588)
+|||+++++...|.| |++ .|+||.+|+|+++|++|++.+||++|.+. .++.- .+.+..+........+
T Consensus 302 ~TGDl~~~~~~gc~cG~~~~~il~i~GR~dd~ik~~G~~v~p~eiE~~l~~~------p~v~~-~~vv~~~~~~~~~~l~ 374 (436)
T 3qov_A 302 RTRDLTRILPGKCPCGRTHLRIDRIKGRSDDMFIIKGVNIFPMQVEKILVQF------PELGS-NYLITLETVNNQDEMI 374 (436)
T ss_dssp EEEEEECEECSCCTTCCCSCEECCCCCBSSSCEEETTEEECHHHHHHHHTTC------TTEEE-EEEEEEEEETTEEEEE
T ss_pred EcCCEEEEcCCCCCCCCCccccCcccCccCCEEEECCEEECHHHHHHHHHhC------cCcCC-cEEEEEEcCCCCcEEE
Confidence 999999998654433 334 99999999999999999999999999753 23321 2333222211224566
Q ss_pred EEEEeccCCC---HHHHHHHHHHHHHhccChhhHHHhhcCCcCCeEEEEeccchHH
Q 007815 489 IFWEVSGEVN---DEVLKECCNCLDRSFVDAGYVSARKVNAIGPLELRVVLKGTFQ 541 (588)
Q Consensus 489 ~~vE~~~~~~---~~~l~~~~~~ld~~L~n~~Y~~~R~~g~l~p~~v~~v~~gtf~ 541 (588)
++|+.. +.. ....+++.+.+.+.| +.| .-.|..|.+|+.+.|.
T Consensus 375 a~v~~~-~~~~~~~~~~~~l~~~l~~~l--~~~-------~~~p~~i~~v~~~~lP 420 (436)
T 3qov_A 375 VEVELS-DLSTDNYIELEKIRRDIIRQL--KDE-------ILVTPKVKLVKKGSLP 420 (436)
T ss_dssp EEEEEC-TTCCCCHHHHHHHHHHHHHHH--HHH-------HSSCCEEEEECTTCCC
T ss_pred EEEEEc-CccccchhhHHHHHHHHHHHH--HHh-------cCCceEEEEeCCCccc
Confidence 788876 322 113444555555554 111 1246689999988776
No 5
>2y4o_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: DLL; 1.90A {Burkholderia cenocepacia}
Probab=99.90 E-value=3.6e-22 Score=215.89 Aligned_cols=380 Identities=17% Similarity=0.118 Sum_probs=219.4
Q ss_pred cHHHHHHHHHHHHHHh-cCCChhhhhc----CC--CCCCChhhhhhcCCCcccccchHHHHHHhcCCCCCCccCCCccee
Q 007815 32 DAERIQRETLRKILEE-NASAEYLQNL----GL--NGRTDPESFKSCVPLVTHEDLQPYIQRIIDGDISPILTGKPITTI 104 (588)
Q Consensus 32 ~~~~~Q~~~L~~iL~~-~~~T~ygr~~----gf--~~i~t~edf~~~vPi~~Yed~~p~ieR~~~Ge~~~ll~~~pi~~f 104 (588)
+.++.|.+.|+.+|++ .++++|++++ |+ ..+.+.+||+ ++|+++|++++.... .+- .-...+.+.+.
T Consensus 24 ~~~~~q~~~l~~~l~~a~~~~~~y~~~~~~~~~~~~~i~~~~dl~-~lP~~~~~~l~~~~p---~~~--~~~~~~~~~~i 97 (443)
T 2y4o_A 24 ELQALQLERLKWSLRHAYDNVPHYRRTFDAAGVHPDDLKSLADLA-KFPFSTKNDLRDNYP---FGL--FAVPREQVVRV 97 (443)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHTCCGGGCCSGGGGG-GSCCBCHHHHHTTTT---TTT--CSSCGGGCCEE
T ss_pred HHHHHHHHHHHHHHHHHHHcCHHHHHHHHHcCCChhhCCCHHHHH-HCCCCcHHHHHhhCC---Ccc--cCCChhheEEE
Confidence 4678999999999997 5899999985 55 4688999998 899999999864321 010 11233445678
Q ss_pred eccccCCCCCcccccCChHHHHHHHHHHHHHHHHHhccCCCCCCceEEEeecccccccCCCCeEeccccccccCchhhhh
Q 007815 105 SRSSGTTQGKPKFLPFNDELMETTLQIFRTSYAFRNREFPIGKGKALQFIYGSKQSKTKGGLNAGTATTNVYRSSTFKAE 184 (588)
Q Consensus 105 ~~TSGTT~G~~K~iP~t~~~~~~~~~~~~~~~~~~~~~~p~~~gk~l~~~~~~~~~~t~~Gi~~g~~S~~~~~~~~~~~~ 184 (588)
..||||| |+||.+++|.+.+......+...+ ..+++..+..+. ... |.+...+. .
T Consensus 98 ~~TSGTT-G~PK~v~~t~~~~~~~~~~~~~~~----~~~~~~~~d~~l-~~~----------~~~~~~~~---------~ 152 (443)
T 2y4o_A 98 HASSGTT-GKPTVVGYTARDIDTWANVTARSI----RAAGGRPGDTLH-NAF----------GYGLFTGG---------L 152 (443)
T ss_dssp EEECCSS-SSCEEEEECHHHHHHHHHHHHHHH----HHTTCCTTCEEE-ECS----------CCSSSHHH---------H
T ss_pred EECCCCC-CCceEEecCHHHHHHHHHHHHHHH----HHcCCCCCCEEE-Eec----------cCcccccH---------H
Confidence 8899999 999999999887654332211111 112333332222 110 00000000 0
Q ss_pred hhhhhhccCCCcccccCCChHHHHHHHHHhcccccCCcceEe-ccchhHHHHHHHHHHHHHHHHHHHHHhcccCCCCCch
Q 007815 185 MKAMQSQCCSPDEVIFGPDFHQSLYCHLLCGLIFREEIQLVF-STFAHSLVHAFRTFELVWEELCDDIREGVLSSRITVP 263 (588)
Q Consensus 185 ~~~~~~~~~~P~~~~~~~d~~~~~Y~~Ll~aL~~~~~l~~i~-~~f~~~ll~~~~~l~~~w~~lv~dI~~g~~~~~~~~~ 263 (588)
...+..++.+. .++. ..+ +.+.+++.|++..+.-
T Consensus 153 ---------------------~~~~~~~~~G~------~~~~~~~~-------------~~~~~~~~i~~~~~t~----- 187 (443)
T 2y4o_A 153 ---------------------GIHYGAERLGC------MVVPMSGG-------------QTEKQVQLIRDFEPKI----- 187 (443)
T ss_dssp ---------------------HHHHHHHHHTC------EEECCCSC-------------CHHHHHHHHHHHCCSE-----
T ss_pred ---------------------HHHHHHHHcCC------EEEECCCC-------------CHHHHHHHHHHhCCcE-----
Confidence 00011111110 0110 000 2244455555554432
Q ss_pred HHHHHhhccCCCCHHHHHHHHHHhcCCCCCCCCccccCCCCceeeEEeecC---cHHHHHHHHHHhCCCCeeccccccCc
Q 007815 264 SIRAAMSKILKPNPELADLIHKKCSGLSNWYGLIPELFPNAKYLSGIMTGS---MEHYLKKLRHYAGDLPLMSADYGSSE 340 (588)
Q Consensus 264 ~ir~~l~~~l~~~p~~A~~L~~~~~~~~g~~~~~~~lwP~L~~i~~~~~g~---~~~~~~~l~~~~g~~~v~~~~YgaSE 340 (588)
+. ..|..+..|.+...+. + ... -+++++ .+++|| ....++++++.| |++++ +.||+||
T Consensus 188 -----l~----~~Ps~~~~l~~~~~~~-~---~~~-~~~~lr---~i~~gGe~l~~~~~~~~~~~~-g~~v~-~~YG~TE 248 (443)
T 2y4o_A 188 -----IL----VTPSYMLNLIDEMVRQ-G---MDP-AESSLK---IGIFGAEPWTQALRNEVETRV-GIDAL-DIYGLSE 248 (443)
T ss_dssp -----EE----ECHHHHHHHHHHHHHT-T---CCG-GGSSCC---EEEEESSCCCHHHHHHHHHHH-TCEEE-EEEEETT
T ss_pred -----EE----ECHHHHHHHHHHHHHc-C---CCc-ccCCce---EEEECCCcCCHHHHHHHHHHh-CcCEE-eccCchh
Confidence 11 1233344443332210 1 111 246788 666666 366778888888 68999 9999999
Q ss_pred c-cceecCCCCCCCcccceeeccCceEEEEEeCCCCCcccccccCCCccccccccCCCCeEEEEEccccc----eeeccc
Q 007815 341 G-WIGANVNPSLPPELATFAVLPNIGYFEFIPQRLGNLESQVLCIEPKPVGLTEVKVGEEYEIIVTNVAG----LYRYRL 415 (588)
Q Consensus 341 g-~~~~~~~~~~~~~~~~~~l~~~~~~~Efip~~~~~~~~~~~~~~~~~l~~~eve~G~~yELVvTt~~G----l~RYr~ 415 (588)
+ +.++... |+....|+++..++..+|+++++ . ++ +|++|+.|||+||+... +.||+|
T Consensus 249 ~~g~~~~~~--~~~~~~g~~~~~~~~~~~i~d~~--~---------g~-----~~~~G~~Gel~v~~~t~~~~p~~~y~T 310 (443)
T 2y4o_A 249 VMGPGVACE--CVETKDGPVIWEDHFYPEIIDPV--T---------GE-----VLPDGSQGELVFTSLTKEAMPVIRYRT 310 (443)
T ss_dssp TTEEEEEEE--CTTTCCSEEECTTTEEEEEECTT--T---------CC-----BCCTTCCEEEEEEESSCSSSCCSSEEE
T ss_pred hcCCeEEec--cCCCCCceEEccCCeEEEEEcCC--C---------CC-----CCCCCCceEEEEeCCCcccChhheeec
Confidence 5 3222211 21111257666667889998864 1 22 45689999999997532 569999
Q ss_pred CCEEEEeceeC--CCCEE-EEEeecCceeeeeeeecCHHHHHHHHHHHHHHhhhcCCeeEeeEEeecCCCCCceEEEEEE
Q 007815 416 GDVVKVMGFHN--STPEL-KFICRRNLLLTINIDKNTEKDLQLSVDEAAQLLAEEKQEVVDFTSHVDLSTDPGHYVIFWE 492 (588)
Q Consensus 416 GDvv~v~~~~~--~~P~i-~f~gR~~d~i~~~Gekv~e~~v~~al~~~~~~l~~~g~~l~~f~~~~~~~~~~~~y~~~vE 492 (588)
||+++++. .| -.++| .|+||.+|+|+++|++|++.+||++|.+. .++.- .+.+..+........+++|+
T Consensus 311 GDl~~~~~-~cG~~~~~l~~i~GR~~d~i~~~G~~v~p~eiE~~l~~~------p~V~~-~~vv~~~~~~~~~~~~a~v~ 382 (443)
T 2y4o_A 311 RDLTALLP-PTARAMRRLAKITGRSDDMLIVRGVNVFPSQIEEIVVAL------PLLSG-QFQITLSRDGHMDRLDLAVE 382 (443)
T ss_dssp EEEECEEC-CSSSSSCEECCCCEESSCCEEETTEEECHHHHHHHHHTS------TTEEE-EEEEEEEEETTEEEEEEEEE
T ss_pred CCEEEEcC-CCCCCccccCccccccCCeEEECCEEECHHHHHHHHHhC------cCcCc-cEEEEEecCCCCceEEEEEE
Confidence 99999987 31 13556 89999999999999999999999999753 24321 23332221111234557787
Q ss_pred ecc--C--CCHHHHHHHHHHHHHhccChhhHHHhhcCCcCCeEEEEeccchHH
Q 007815 493 VSG--E--VNDEVLKECCNCLDRSFVDAGYVSARKVNAIGPLELRVVLKGTFQ 541 (588)
Q Consensus 493 ~~~--~--~~~~~l~~~~~~ld~~L~n~~Y~~~R~~g~l~p~~v~~v~~gtf~ 541 (588)
... + ......+++.+.+.+.| ....-.|..|.++..+.|.
T Consensus 383 ~~~~~~~~~~~~~~~~l~~~l~~~l---------~~~~~~p~~v~~v~~~~lP 426 (443)
T 2y4o_A 383 LRSEAAASVTDGERAALARELQHRI---------KTMVGVSSGVTVLAAGGIP 426 (443)
T ss_dssp ECHHHHTTCCHHHHHHHHHHHHHHH---------HHHTCCCCEEEEECTTCSC
T ss_pred ECCcccccchhhHHHHHHHHHHHHH---------HHHhCCceEEEEeCCCccc
Confidence 743 1 12223344444455444 1111245688899877765
No 6
>2y27_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: MSE PG4 ATP; 1.60A {Burkholderia cenocepacia} PDB: 2y4n_A*
Probab=99.90 E-value=2.2e-22 Score=217.18 Aligned_cols=381 Identities=15% Similarity=0.127 Sum_probs=220.7
Q ss_pred cHHHHHHHHHHHHHHh-cCCChhhhhc----CC--CCCCChhhhhhcCCCcccccchHHHHHHhcCCCCCCccCCCccee
Q 007815 32 DAERIQRETLRKILEE-NASAEYLQNL----GL--NGRTDPESFKSCVPLVTHEDLQPYIQRIIDGDISPILTGKPITTI 104 (588)
Q Consensus 32 ~~~~~Q~~~L~~iL~~-~~~T~ygr~~----gf--~~i~t~edf~~~vPi~~Yed~~p~ieR~~~Ge~~~ll~~~pi~~f 104 (588)
+.++.|.+.|+.+|++ .++++|++++ |+ ..+.+.+||+ ++|+++|++++.... .+- .-...+.+.++
T Consensus 22 ~~~~~~~~~l~~~l~~a~~~~~~y~~~~~~~~~~~~~i~~~~dl~-~lP~~~~~~l~~~~~---~~~--~~~~~~~~~~i 95 (437)
T 2y27_A 22 ELTALQLERLKWSLRHAYDHSPVYRRKFDEAGVHPDDLKTLADLS-RFPFTTKGDLRDSYP---FGM--FAVPQDRISRI 95 (437)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHTCCGGGCSSGGGGG-GSCCBCHHHHHHTTT---TTT--CSSCGGGCCEE
T ss_pred HHHHHHHHHHHHHHHHHHHCCHHHHHHHHHcCCChhhCCCHHHHH-HCCCCCHHHHHhcCC---Ccc--ccCChhHeEEE
Confidence 4678999999999997 5899999985 54 4588999998 799999998864321 010 11223445678
Q ss_pred eccccCCCCCcccccCChHHHHHHHHHHHHHHHHHhccCCCCCCceEEEeecccccccCCCCeEeccccccccCchhhhh
Q 007815 105 SRSSGTTQGKPKFLPFNDELMETTLQIFRTSYAFRNREFPIGKGKALQFIYGSKQSKTKGGLNAGTATTNVYRSSTFKAE 184 (588)
Q Consensus 105 ~~TSGTT~G~~K~iP~t~~~~~~~~~~~~~~~~~~~~~~p~~~gk~l~~~~~~~~~~t~~Gi~~g~~S~~~~~~~~~~~~ 184 (588)
..||||| |+||-+++|.+.+......+... ...+++..+..+. ... |.+...+. .
T Consensus 96 ~~TSGTT-G~PK~v~~t~~~~~~~~~~~~~~----~~~~~~~~~d~~~-~~~----------~~~~~~~~---------~ 150 (437)
T 2y27_A 96 HASSGTT-GKPTVVGYTAADIDTWANLVARS----IRAAGARRGDKVH-VSY----------GYGLFTGG---------L 150 (437)
T ss_dssp EECCCTT-SSCCEEEECHHHHHHHHHHHHHH----HHHTTCCTTCEEE-ECS----------CCSSSHHH---------H
T ss_pred EECCCCC-CCceEEecCHHHHHHHHHHHHHH----HHHcCCCCCCEEE-Ecc----------cccccccc---------h
Confidence 8899999 99999999988765433221111 1122333332222 110 00000000 0
Q ss_pred hhhhhhccCCCcccccCCChHHHHHHHHHhcccccCCcceEe-ccchhHHHHHHHHHHHHHHHHHHHHHhcccCCCCCch
Q 007815 185 MKAMQSQCCSPDEVIFGPDFHQSLYCHLLCGLIFREEIQLVF-STFAHSLVHAFRTFELVWEELCDDIREGVLSSRITVP 263 (588)
Q Consensus 185 ~~~~~~~~~~P~~~~~~~d~~~~~Y~~Ll~aL~~~~~l~~i~-~~f~~~ll~~~~~l~~~w~~lv~dI~~g~~~~~~~~~ 263 (588)
...+..++.+. .++. ..+ +.+.+++.|++..+.-
T Consensus 151 ---------------------~~~~~~~~~G~------~~~~~~~~-------------~~~~~~~~i~~~~~t~----- 185 (437)
T 2y27_A 151 ---------------------GAHYGAERAGL------TVIPFGGG-------------QTEKQVQLIQDFRPDI----- 185 (437)
T ss_dssp ---------------------HHHHHHHHTTC------EEECCCSC-------------CHHHHHHHHHHHCCSE-----
T ss_pred ---------------------HHHHHHHHcCC------EEEeCCCC-------------CHHHHHHHHHHhCCCE-----
Confidence 00011111110 0110 000 2344555565555432
Q ss_pred HHHHHhhccCCCCHHHHHHHHHHhcCCCCCCCCccccCCCCceeeEEeecC---cHHHHHHHHHHhCCCCeeccccccCc
Q 007815 264 SIRAAMSKILKPNPELADLIHKKCSGLSNWYGLIPELFPNAKYLSGIMTGS---MEHYLKKLRHYAGDLPLMSADYGSSE 340 (588)
Q Consensus 264 ~ir~~l~~~l~~~p~~A~~L~~~~~~~~g~~~~~~~lwP~L~~i~~~~~g~---~~~~~~~l~~~~g~~~v~~~~YgaSE 340 (588)
+. ..|..+..|.+...+. + ... -+++++ .+++|| ....++++++.+ |++++ +.||+||
T Consensus 186 -----l~----~~Ps~~~~l~~~~~~~-~---~~~-~~~~lr---~i~~gGe~l~~~~~~~~~~~~-g~~v~-~~YG~TE 246 (437)
T 2y27_A 186 -----IM----VTPSYMLSIADEIERQ-G---LDP-VQSSLR---IGIFGAEPWTNDMRVAIEQRM-GIDAV-DIYGLSE 246 (437)
T ss_dssp -----EE----ECHHHHHHHHHHHHHT-T---CCG-GGSSCC---EEEEESSCCCHHHHHHHHHHH-TSEEE-EEEEETT
T ss_pred -----EE----ECHHHHHHHHHHHHHc-C---CCc-ccCCee---EEEEcCccCCHHHHHHHHHHH-CcCEE-ecCCchh
Confidence 11 1234444443332210 1 111 246788 666666 366778888888 68999 9999999
Q ss_pred c-cceecCCCCCCCcccceeeccCceEEEEEeCCCCCcccccccCCCccccccccCCCCeEEEEEccccc----eeeccc
Q 007815 341 G-WIGANVNPSLPPELATFAVLPNIGYFEFIPQRLGNLESQVLCIEPKPVGLTEVKVGEEYEIIVTNVAG----LYRYRL 415 (588)
Q Consensus 341 g-~~~~~~~~~~~~~~~~~~l~~~~~~~Efip~~~~~~~~~~~~~~~~~l~~~eve~G~~yELVvTt~~G----l~RYr~ 415 (588)
+ +.++... |+....++++..++..+|+++++ . ++ +|++|+.|||+||+... +.||+|
T Consensus 247 ~~g~~~~~~--~~~~~~g~~~~~~~~~~~i~d~~--~---------g~-----~~~~g~~Gel~v~~~t~~~~~~~~y~T 308 (437)
T 2y27_A 247 VMGPGVASE--CVETKDGPTIWEDHFYPEIIDPE--T---------GE-----VLPDGELGELVFTSLTKEALPIIRYRT 308 (437)
T ss_dssp TTEEEEEEC--CTTTCSSCEECTTTEEEEEECTT--T---------CC-----BCCTTCCEEEEEEESSCSSSCCCSEEE
T ss_pred hcCCeeEEe--cCCCCCceeEccCceEEEEEcCC--C---------CC-----CCCCCCccEEEEecCCcCCchhheeec
Confidence 5 3222222 22111256666677889999864 1 22 45789999999997533 679999
Q ss_pred CCEEEEeceeC-CCCEE-EEEeecCceeeeeeeecCHHHHHHHHHHHHHHhhhcCCeeEeeEEeecCCCCCceEEEEEEe
Q 007815 416 GDVVKVMGFHN-STPEL-KFICRRNLLLTINIDKNTEKDLQLSVDEAAQLLAEEKQEVVDFTSHVDLSTDPGHYVIFWEV 493 (588)
Q Consensus 416 GDvv~v~~~~~-~~P~i-~f~gR~~d~i~~~Gekv~e~~v~~al~~~~~~l~~~g~~l~~f~~~~~~~~~~~~y~~~vE~ 493 (588)
||+++++...+ ..|++ .|+||.+|+|+++|++|++.+||++|.+. .++.- .+.+..+........+++|+.
T Consensus 309 GDl~~~~~~~G~~~~~i~~i~GR~~d~i~~~G~~v~p~eiE~~l~~~------p~V~~-~~vv~~~~~~~~~~l~a~v~~ 381 (437)
T 2y27_A 309 RDLTRLLPGTARTMRRMEKITGRSDDMMIVRGVNVFPTQIEEQLLKQ------RALAP-HYQIVLTKEGPLDVLTLNVEP 381 (437)
T ss_dssp EEEECEECCSSSSSCEECCCCEEGGGCEEETTEEECHHHHHHHHTTC------TTBCS-CCEEEEEEETTEEEEEEEECB
T ss_pred CCEEEEeCCCCCCccccCccccccCCeEEECCeEECHHHHHHHHHhC------cCcCc-cEEEEEeecCCCceEEEEEEE
Confidence 99999986212 35677 89999999999999999999999999753 23311 233322211122456678887
Q ss_pred ccCCC--HHHHHHHHHHHHHhccChhhHHHhhcCCcCCeEEEEeccchHH
Q 007815 494 SGEVN--DEVLKECCNCLDRSFVDAGYVSARKVNAIGPLELRVVLKGTFQ 541 (588)
Q Consensus 494 ~~~~~--~~~l~~~~~~ld~~L~n~~Y~~~R~~g~l~p~~v~~v~~gtf~ 541 (588)
..+.. ....+++.+.+.+.| +.| .-.|..|.++..+.|.
T Consensus 382 ~~~~~~~~~~~~~l~~~l~~~l--~~~-------~~~p~~v~~v~~~~lP 422 (437)
T 2y27_A 382 CPETAPDTAAIQVAKQALAYDI--KSL-------IGVTAVINVLPVNGIE 422 (437)
T ss_dssp CTTTTTCHHHHHHHHHHHHHHH--HHH-------HCCCEEEEECCTTCSC
T ss_pred CCCccchhhhHHHHHHHHHHHH--HHh-------cCCceEEEEeCCCCcc
Confidence 54321 123344444454443 111 1145678888877765
No 7
>3e7w_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, non-ribosomal peptide synthetase, NRPS, adenylation domain, D-alanylation; HET: AMP; 2.28A {Bacillus subtilis} PDB: 3e7x_A*
Probab=99.65 E-value=1.2e-14 Score=159.71 Aligned_cols=135 Identities=17% Similarity=0.225 Sum_probs=95.1
Q ss_pred cccCCCCceeeEEeecC---cHHHHHHHHHHhCCCCeeccccccCcccceecC---CC----CCCCcccceeeccCceEE
Q 007815 298 PELFPNAKYLSGIMTGS---MEHYLKKLRHYAGDLPLMSADYGSSEGWIGANV---NP----SLPPELATFAVLPNIGYF 367 (588)
Q Consensus 298 ~~lwP~L~~i~~~~~g~---~~~~~~~l~~~~g~~~v~~~~YgaSEg~~~~~~---~~----~~~~~~~~~~l~~~~~~~ 367 (588)
....++++ .+.+|| .....+++++.|++++++ +.||+||+.+.+.. .. .......|.. .+ +.-+
T Consensus 256 ~~~~~~l~---~~~~~G~~l~~~~~~~~~~~~~~~~i~-~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~G~~-~~-~~~~ 329 (511)
T 3e7w_A 256 QDLLPHAD---TFMFCGEVLPVSVAKALLERFPKAKIF-NTYGPTEATVAVTSVEITNDVISRSESLPVGFA-KP-DMNI 329 (511)
T ss_dssp TTTCTTCC---EEEECSSCCCHHHHHHHHHHCTTCEEE-ECCCCGGGSSCSEEEEECHHHHTTCSSCCCBEE-CT-TCEE
T ss_pred cccCCccc---EEEEecCCCCHHHHHHHHHHCCCcEEE-eCcccchheeeeeEEeccccccccCCcCCCcce-eC-CCEE
Confidence 34567888 666666 266677788888889999 99999997542211 10 1111112332 22 3345
Q ss_pred EEEeCCCCCcccccccCCCccccccccCCCCeEEEEEcc---cccee-----------------ecccCCEEEEeceeCC
Q 007815 368 EFIPQRLGNLESQVLCIEPKPVGLTEVKVGEEYEIIVTN---VAGLY-----------------RYRLGDVVKVMGFHNS 427 (588)
Q Consensus 368 Efip~~~~~~~~~~~~~~~~~l~~~eve~G~~yELVvTt---~~Gl~-----------------RYr~GDvv~v~~~~~~ 427 (588)
++++.+ + .++++|+.|||+|++ +.||| +|+|||++++.
T Consensus 330 ~i~d~~------------g-----~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~g~~~~~TGDlg~~~----- 387 (511)
T 3e7w_A 330 FIMDEE------------G-----QPLPEGEKGEIVIAGPSVSRGYLGEPELTEKAFFSHEGQWAYRTGDAGFIQ----- 387 (511)
T ss_dssp EEECTT------------S-----CBCCTTCCEEEEEESTTSCCCBTTCHHHHHHHEEESSSSEEEEEEEEEEEE-----
T ss_pred EEECCC------------C-----CCCCCCCceEEEEecCccChhhCCCcccchhhhcCCCCCEEEeCCCeEEcc-----
Confidence 555432 1 256789999999975 35554 69999999884
Q ss_pred CCEEEEEeecCceeeeeeeecCHHHHHHHHHHH
Q 007815 428 TPELKFICRRNLLLTINIDKNTEKDLQLSVDEA 460 (588)
Q Consensus 428 ~P~i~f~gR~~d~i~~~Gekv~e~~v~~al~~~ 460 (588)
...+.|+||.+|+|+++|++|++.+||++|.+.
T Consensus 388 dG~l~~~GR~~d~ik~~G~~v~p~eIE~~l~~~ 420 (511)
T 3e7w_A 388 DGQIFCQGRLDFQIKLHGYRMELEEIEFHVRQS 420 (511)
T ss_dssp TTEEEEEEESSSEEEETTEEEEHHHHHHHHHHS
T ss_pred CCeEEEEccccCEEEECCEEeCHHHHHHHHHhC
Confidence 478999999999999999999999999999863
No 8
>3etc_A AMP-binding protein; adenylate-forming acyl-COA synthetase ligase, ligase; HET: PGE 1PE EPE; 2.10A {Methanosarcina acetivorans}
Probab=99.64 E-value=9.5e-15 Score=163.59 Aligned_cols=131 Identities=17% Similarity=0.195 Sum_probs=95.9
Q ss_pred CCCCceeeEEeecCc---HHHHHHHHHHhCCCCeeccccccCcccceecCCCC--CCCcccceeeccCceEEEEEeCCCC
Q 007815 301 FPNAKYLSGIMTGSM---EHYLKKLRHYAGDLPLMSADYGSSEGWIGANVNPS--LPPELATFAVLPNIGYFEFIPQRLG 375 (588)
Q Consensus 301 wP~L~~i~~~~~g~~---~~~~~~l~~~~g~~~v~~~~YgaSEg~~~~~~~~~--~~~~~~~~~l~~~~~~~Efip~~~~ 375 (588)
+++|+ .+++||. ....+++.+.+ +++++ +.||+||+.+.+...+. ..++..|..+ .+.-+++++++
T Consensus 340 l~~lr---~i~~gGe~l~~~~~~~~~~~~-g~~i~-~~YG~TE~~~~~~~~~~~~~~~~~~G~p~--~~~~v~ivd~~-- 410 (580)
T 3etc_A 340 FSTLK---YAVVAGEPLNPEVFNRFLEFT-GIKLM-EGFGQTETVVTIATFPWMEPKPGSIGKPT--PGYKIELMDRD-- 410 (580)
T ss_dssp CTTCC---EEEECSSCCCHHHHHHHHHHH-SCCCE-EEECCTTSSCCEECCTTSCCCTTCCBEEC--TTCEEEEECTT--
T ss_pred Cccce---EEEEccCCCCHHHHHHHHHHh-CCeEe-cccccccccceeecCCCCCCCCCccccCC--CCCEEEEECCC--
Confidence 46788 6777773 66667787778 58999 99999998553332221 1233334432 33445566543
Q ss_pred CcccccccCCCccccccccCCCCeEEEEEcc--------cccee-------------ecccCCEEEEeceeCCCCEEEEE
Q 007815 376 NLESQVLCIEPKPVGLTEVKVGEEYEIIVTN--------VAGLY-------------RYRLGDVVKVMGFHNSTPELKFI 434 (588)
Q Consensus 376 ~~~~~~~~~~~~~l~~~eve~G~~yELVvTt--------~~Gl~-------------RYr~GDvv~v~~~~~~~P~i~f~ 434 (588)
+ .++++|+.|||+|++ +.||| +|+|||+++++. .+.+.|+
T Consensus 411 --g-------------~~~~~g~~GEl~v~~~~g~~~~~~~gY~~~p~~t~~~f~~gwy~TGDlg~~d~----dG~l~~~ 471 (580)
T 3etc_A 411 --G-------------RLCEVGEEGEIVINTMEGKPVGLFVHYGKDPERTEETWHDGYYHTGDMAWMDE----DGYLWFV 471 (580)
T ss_dssp --S-------------CBCCTTCCEEEEEECTTCCCTTCCCEETTCHHHHHHHEETTEEEEEEEEEECT----TSCEEEE
T ss_pred --C-------------CCCCCCCceEEEEecCCCCCCeeeccccCCHhHHHhhcCCCEEecCcEEEECC----CCcEEEE
Confidence 1 256789999999975 24565 399999999985 6899999
Q ss_pred eecCceeeeeeeecCHHHHHHHHHH
Q 007815 435 CRRNLLLTINIDKNTEKDLQLSVDE 459 (588)
Q Consensus 435 gR~~d~i~~~Gekv~e~~v~~al~~ 459 (588)
||.+|+|+++|++|++.+||++|.+
T Consensus 472 GR~dd~Ik~~G~~I~p~eIE~~l~~ 496 (580)
T 3etc_A 472 GRADDIIKTSGYKVGPFEVESALIQ 496 (580)
T ss_dssp EESSSCEEETTEEECHHHHHHHHTT
T ss_pred ecCCCEEEECCEEECHHHHHHHHHh
Confidence 9999999999999999999999975
No 9
>2d1s_A Luciferase, luciferin 4-monooxygenase; alpha/beta, beta barrel, alpha+beta, riken structural genomics/proteomics initiative, RSGI; HET: SLU; 1.30A {Luciola cruciata} PDB: 2d1q_A* 2d1r_A* 2d1t_A*
Probab=99.63 E-value=1.7e-14 Score=160.14 Aligned_cols=133 Identities=14% Similarity=0.087 Sum_probs=97.4
Q ss_pred CCCCceeeEEeecCc---HHHHHHHHHHhCCCCeeccccccCcccceecCCCC--CCCcccceeeccCceEEEEEeCCCC
Q 007815 301 FPNAKYLSGIMTGSM---EHYLKKLRHYAGDLPLMSADYGSSEGWIGANVNPS--LPPELATFAVLPNIGYFEFIPQRLG 375 (588)
Q Consensus 301 wP~L~~i~~~~~g~~---~~~~~~l~~~~g~~~v~~~~YgaSEg~~~~~~~~~--~~~~~~~~~l~~~~~~~Efip~~~~ 375 (588)
+++|+ .+.+||. ....+++++.+++++++ +.||+||+...+...+. ...+..|..+ .+.-+++++++
T Consensus 308 l~~lr---~i~~gG~~l~~~~~~~~~~~~~~~~i~-~~YG~TE~~~~~~~~~~~~~~~~~~G~~~--~~~~~~i~d~~-- 379 (548)
T 2d1s_A 308 LSNLV---EIASGGAPLSKEVGEAVARRFNLPGVR-QGYGLTETTSAIIITPEGDDKPGASGKVV--PLFKAKVIDLD-- 379 (548)
T ss_dssp CTTCC---EEEECSSCCCHHHHHHHHHHTTCSCCE-EEEECGGGSSEEEECCTTCCCTTCCBEEC--TTCEEEEECTT--
T ss_pred cccee---EEEEcCccCCHHHHHHHHHHcCCCcee-eccccccccceeeecCcccCCCCCCCccC--CCceEEEEeCC--
Confidence 46788 6677763 66777888888778898 99999997543322221 1222233432 33456666643
Q ss_pred CcccccccCCCccccccccCCCCeEEEEEcc---cccee--------------ecccCCEEEEeceeCCCCEEEEEeecC
Q 007815 376 NLESQVLCIEPKPVGLTEVKVGEEYEIIVTN---VAGLY--------------RYRLGDVVKVMGFHNSTPELKFICRRN 438 (588)
Q Consensus 376 ~~~~~~~~~~~~~l~~~eve~G~~yELVvTt---~~Gl~--------------RYr~GDvv~v~~~~~~~P~i~f~gR~~ 438 (588)
+ + .++++|+.|||+|++ +.||| ||+|||+++++. .+.+.|+||.+
T Consensus 380 ~---------~-----~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~g~~~TGDl~~~~~----dG~l~~~GR~~ 441 (548)
T 2d1s_A 380 T---------K-----KSLGPNRRGEVCVKGPMLMKGYVNNPEATKELIDEEGWLHTGDIGYYDE----EKHFFIVDRLK 441 (548)
T ss_dssp T---------C-----CBCCTTCCEEEEEESTTSCSEETTCHHHHHHHBCTTSCEEEEEEEEECT----TCCEEEEEEGG
T ss_pred c---------C-----ccCCCCCCeEEEECCHHHhhhhcCChHHhhhcccCCcEEEccCEEEEcC----CCeEEEecccc
Confidence 1 1 256789999999987 35665 599999999985 67899999999
Q ss_pred ceeeeeeeecCHHHHHHHHHH
Q 007815 439 LLLTINIDKNTEKDLQLSVDE 459 (588)
Q Consensus 439 d~i~~~Gekv~e~~v~~al~~ 459 (588)
|+|+++|++|++.+||++|.+
T Consensus 442 d~ik~~G~~v~p~eIE~~l~~ 462 (548)
T 2d1s_A 442 SLIKYKGYQVPPAELESVLLQ 462 (548)
T ss_dssp GCBCBTTCCBCHHHHHHHHHT
T ss_pred ceEEECCEEECHHHHHHHHHh
Confidence 999999999999999999985
No 10
>3ni2_A 4-coumarate:COA ligase; 4CL, phenylpropanoid biosynthesis; HET: AYL EPE; 1.90A {Populus tomentosa} PDB: 3a9v_A* 3a9u_A*
Probab=99.63 E-value=1.2e-14 Score=160.93 Aligned_cols=134 Identities=15% Similarity=0.147 Sum_probs=97.5
Q ss_pred cCCCCceeeEEeecCc---HHHHHHHHHHhCCCCeeccccccCccccee--cC----CC-CCCCcccceeeccCceEEEE
Q 007815 300 LFPNAKYLSGIMTGSM---EHYLKKLRHYAGDLPLMSADYGSSEGWIGA--NV----NP-SLPPELATFAVLPNIGYFEF 369 (588)
Q Consensus 300 lwP~L~~i~~~~~g~~---~~~~~~l~~~~g~~~v~~~~YgaSEg~~~~--~~----~~-~~~~~~~~~~l~~~~~~~Ef 369 (588)
-.++|+ .+.+||. ....+++++.+++++++ +.||+||+...+ +. .+ ...++..|..+ .+.-+++
T Consensus 295 ~l~~lr---~i~~gGe~l~~~~~~~~~~~~~~~~l~-~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~G~~~--~~~~~~i 368 (536)
T 3ni2_A 295 DLSSLR---MIKSGGAPLGKELEDTVRAKFPQARLG-QGYGMTEAGPVLAMCLAFAKEPFDIKPGACGTVV--RNAEMKI 368 (536)
T ss_dssp CCTTCC---EEEEESSCCCHHHHHHHHHHCTTSEEE-EEEECGGGSSEEEECGGGSSSCCCCCTTCCCEEC--SSCEEEE
T ss_pred CCccce---EEEECCCCCCHHHHHHHHHHCCCCCcc-ccccccccchhhhcccccCCccccCCCCCeeEeC--CCcEEEE
Confidence 456888 6677763 66677788888889999 999999975322 11 01 11122234432 3345666
Q ss_pred EeCCCCCcccccccCCCccccccccCCCCeEEEEEcc---cccee--------------ecccCCEEEEeceeCCCCEEE
Q 007815 370 IPQRLGNLESQVLCIEPKPVGLTEVKVGEEYEIIVTN---VAGLY--------------RYRLGDVVKVMGFHNSTPELK 432 (588)
Q Consensus 370 ip~~~~~~~~~~~~~~~~~l~~~eve~G~~yELVvTt---~~Gl~--------------RYr~GDvv~v~~~~~~~P~i~ 432 (588)
++++ ++ .++++|+.|||+|++ +.||| +|||||+++++. .+.+.
T Consensus 369 ~d~~-----------~~-----~~~~~g~~GEl~v~g~~v~~GY~~~p~~t~~~~~~~g~~~TGDl~~~~~----dG~l~ 428 (536)
T 3ni2_A 369 VDPE-----------TG-----ASLPRNQPGEICIRGDQIMKGYLNDPEATSRTIDKEGWLHTGDIGYIDD----DDELF 428 (536)
T ss_dssp ECTT-----------TC-----CBCCTTCCEEEEEESTTSCSEETTCHHHHHHHBCTTSCEEEEEEEEECT----TSCEE
T ss_pred EeCC-----------CC-----cCCCCCCccEEEEeCcccchhhcCChhHHHhhccCCCceEcccEEEEcC----CceEE
Confidence 6643 12 256789999999976 46676 599999999985 68999
Q ss_pred EEeecCceeeeeeeecCHHHHHHHHHH
Q 007815 433 FICRRNLLLTINIDKNTEKDLQLSVDE 459 (588)
Q Consensus 433 f~gR~~d~i~~~Gekv~e~~v~~al~~ 459 (588)
|+||.+|+|+++|++|++.+||++|.+
T Consensus 429 ~~GR~dd~ik~~G~~v~p~eIE~~l~~ 455 (536)
T 3ni2_A 429 IVDRLKELIKYKGFQVAPAELEALLIA 455 (536)
T ss_dssp EEEECSCCEEETTEEECHHHHHHHHHT
T ss_pred EEecccceEEECCEEECHHHHHHHHHh
Confidence 999999999999999999999999875
No 11
>3hgu_A EHPF; phenazine, antibiotic, biosynthetic protein; 1.95A {Pantoea agglomerans} PDB: 3hgv_A 3l2k_A*
Probab=99.62 E-value=2.2e-14 Score=151.09 Aligned_cols=318 Identities=13% Similarity=0.111 Sum_probs=157.5
Q ss_pred HHHHHHHHHHHHh-cC---CChhhhhc----CCC---CCCChhhhhhcCCCcccccchH-HHHHHhcCCCCCCccCCCcc
Q 007815 35 RIQRETLRKILEE-NA---SAEYLQNL----GLN---GRTDPESFKSCVPLVTHEDLQP-YIQRIIDGDISPILTGKPIT 102 (588)
Q Consensus 35 ~~Q~~~L~~iL~~-~~---~T~ygr~~----gf~---~i~t~edf~~~vPi~~Yed~~p-~ieR~~~Ge~~~ll~~~pi~ 102 (588)
..+++.|++++++ .+ +++|||++ |+. .|++.+|++ ++|+++ ++++. +.+.+.. .. +..+.+.
T Consensus 21 ~~~~~~l~~~~~~~~~~~~~~p~Yr~~~~~~g~~p~~~i~~~~dl~-~lP~~~-~~l~~~~~~~~~p---~~-~~~~~~a 94 (369)
T 3hgu_A 21 NDTNNFVQALMRWHFSKETGSPFWLGMREQLNFDPIKDVKTINDLR-QFSDIS-HCLRQEPVANLVP---QG-LPADSHP 94 (369)
T ss_dssp TCHHHHHHHHHHHHHSTTTSCHHHHHHGGGSSSCHHHHCCSTGGGG-GSCCCG-GGGTTSCGGGGSC---TT-SCTTCCC
T ss_pred cCHHHHHHHHHHHHcCCCCCCHHHHHHHHhcCCChhHhCCCHHHHh-hCCCch-hhhhcCCHHHcCC---cc-CCccccE
Confidence 3577889999987 57 89999984 663 688999997 799999 99865 3332221 01 1345566
Q ss_pred eeeccccCCCCCcccccCChHHHHHHHHHHHHHHHHHhccCCCCCC-ceEEEeecccccccCCCCeEeccccccccCchh
Q 007815 103 TISRSSGTTQGKPKFLPFNDELMETTLQIFRTSYAFRNREFPIGKG-KALQFIYGSKQSKTKGGLNAGTATTNVYRSSTF 181 (588)
Q Consensus 103 ~f~~TSGTT~G~~K~iP~t~~~~~~~~~~~~~~~~~~~~~~p~~~g-k~l~~~~~~~~~~t~~Gi~~g~~S~~~~~~~~~ 181 (588)
+...||||| |+||-+.+|...+...... .......+.+..+ +.+. ..+ .|.-....
T Consensus 95 ~i~~TSGTT-G~PKgv~~t~~~~~~~~~~----~~~~~~~~~~~~~d~~l~--~~p----------~g~~~~g~------ 151 (369)
T 3hgu_A 95 QVYESGGTT-GAPKYVVAYDAWIEALISW----RMSGYQHRPGRPSGNTLA--AIP----------TGPHIVGA------ 151 (369)
T ss_dssp EEEEECC----CCEEEEECHHHHHHHHHH----HTTTTTTSTTCCCCEEEE--CSC----------CTTCHHHH------
T ss_pred EEEECCCCC-CCCCEEEECHHHHHHHHHH----HHhhHHhhCCCCcceEEE--ecC----------CCchhhhH------
Confidence 888999999 9999999998766432211 1111111122233 2222 111 10000000
Q ss_pred hhhhhhhhhccCCCcccccCCChHHHHHHHHHhcccccCCcceEeccchhHHHHHHHHHHHHHHHHHHHHHhcccCCCCC
Q 007815 182 KAEMKAMQSQCCSPDEVIFGPDFHQSLYCHLLCGLIFREEIQLVFSTFAHSLVHAFRTFELVWEELCDDIREGVLSSRIT 261 (588)
Q Consensus 182 ~~~~~~~~~~~~~P~~~~~~~d~~~~~Y~~Ll~aL~~~~~l~~i~~~f~~~ll~~~~~l~~~w~~lv~dI~~g~~~~~~~ 261 (588)
.........-. .++ ..+..-.....+. ... .....-...+...+++++.|++..+.....
T Consensus 152 --~~~~~~~~~G~--~v~-~~~~dp~~~~~~~------------~~~---~~~~~~~~~~~~~~~~~~~i~~~~~t~l~~ 211 (369)
T 3hgu_A 152 --INKERALRLGG--MFF-SIDIDPRWVKRSL------------SEG---DTATVRKYTHHLVDQVQNTLMNQDIRFLVT 211 (369)
T ss_dssp --HHHHHHHHTTS--CEE-CCCCCHHHHHHHH------------HTT---CHHHHHHHHHHHHHHHHHHHHHSCEEEEEE
T ss_pred --HHHHHHHHcCC--EEE-CccCChHHHHHhh------------ccc---chhhhHHHHHHHHHHHHHHHHhCCCCEEEe
Confidence 00000000000 000 0000000000000 000 001111123334455666777766644222
Q ss_pred chHHHHHhhccCCCCHHHHHHHHHHhcCCCCCCCCccccCCCCceeeEEeecC---cHHHHHHHH-HHhCCCCeeccccc
Q 007815 262 VPSIRAAMSKILKPNPELADLIHKKCSGLSNWYGLIPELFPNAKYLSGIMTGS---MEHYLKKLR-HYAGDLPLMSADYG 337 (588)
Q Consensus 262 ~~~ir~~l~~~l~~~p~~A~~L~~~~~~~~g~~~~~~~lwP~L~~i~~~~~g~---~~~~~~~l~-~~~g~~~v~~~~Yg 337 (588)
.|.+-..|... +.. . ..-.++++ .+.+|| ....+++++ +.||+++++ +.||
T Consensus 212 ~Ps~~~~l~~~----~~~----~-------------~~~~~~lr---~i~~gGe~l~~~~~~~~~~~~~p~~~v~-~~YG 266 (369)
T 3hgu_A 212 TPPVLRELLKR----PEV----V-------------LQMKQSLA---QITLGGTELNLDEIKFIASEILPDCEFS-ASYG 266 (369)
T ss_dssp CHHHHHHHTTC----HHH----H-------------HHHHHHCS---EEEEESSCCCHHHHHHHHHHTCTTSEEE-EEEE
T ss_pred CHHHHHHHHhh----hhh----h-------------ccccCCee---EEEECCccCCHHHHHHHHHHhCCCcEEE-cccC
Confidence 22221111111 110 0 01124577 666666 367778888 888789999 9999
Q ss_pred cCcccceecCCCCCCCcccceeec----cCceEEEEEeCCCCCcccccccCCCccccccccCCCCeEEEEEcccc---ce
Q 007815 338 SSEGWIGANVNPSLPPELATFAVL----PNIGYFEFIPQRLGNLESQVLCIEPKPVGLTEVKVGEEYEIIVTNVA---GL 410 (588)
Q Consensus 338 aSEg~~~~~~~~~~~~~~~~~~l~----~~~~~~Efip~~~~~~~~~~~~~~~~~l~~~eve~G~~yELVvTt~~---Gl 410 (588)
+||+.... ..|+....|.++. ..+..+++++++ +++ .|++|+.|||+||+.. -+
T Consensus 267 ~TE~~~~~---~~~~~~~~G~~~~~~~~~~~~~v~ivD~~-----------~g~-----~vp~G~~GEl~vt~l~~~~~l 327 (369)
T 3hgu_A 267 STSALGVS---RSLLITSESQQVIYDSFSPFITYDVVDSI-----------TAQ-----TVEYGERGNVIVTHLSPWAFY 327 (369)
T ss_dssp EGGGTEEE---EECCBCTTCSSCEEECCTTTEEEEEECTT-----------TCS-----BCCTTCEEEEEEEEEETTEEE
T ss_pred chhhhcce---eccccccCCCcccccCCCCCeEEEEECCC-----------CCc-----CCCCCCceEEEEEEcCccccc
Confidence 99975432 1222211344421 234667777663 122 5678999999999853 28
Q ss_pred eecccCCEEEEeceeCCC-----CEEEEEeecCceeeeee
Q 007815 411 YRYRLGDVVKVMGFHNST-----PELKFICRRNLLLTINI 445 (588)
Q Consensus 411 ~RYr~GDvv~v~~~~~~~-----P~i~f~gR~~d~i~~~G 445 (588)
.||+|||+++.....+.- --+..++|.++..++.|
T Consensus 328 ~ry~tgD~~~~~~~~~g~~~d~~~~v~~~~~~~~~~~i~g 367 (369)
T 3hgu_A 328 PRVAERDTAIRLPGVSGFAGDRLADIEPLKISEGRKVIEG 367 (369)
T ss_dssp EEEEEEEEEEEECCSTTCSSCEEEEEEECC----------
T ss_pred ccccCCceEEEecCCCCCcCcccccceeccccCCCceeee
Confidence 999999999887543321 14556666665555555
No 12
>4fuq_A Malonyl COA synthetase; ANL superfamily, methylma malonate, ligase; HET: MSE; 1.70A {Rhodopseudomonas palustris} PDB: 4fut_A* 4gxr_A* 4gxq_A*
Probab=99.61 E-value=2.8e-14 Score=156.78 Aligned_cols=134 Identities=15% Similarity=0.112 Sum_probs=96.7
Q ss_pred ccCCCCceeeEEeecCc---HHHHHHHHHHhCCCCeeccccccCcccceecCC--CCCCCcccceeeccCceEEEEEeCC
Q 007815 299 ELFPNAKYLSGIMTGSM---EHYLKKLRHYAGDLPLMSADYGSSEGWIGANVN--PSLPPELATFAVLPNIGYFEFIPQR 373 (588)
Q Consensus 299 ~lwP~L~~i~~~~~g~~---~~~~~~l~~~~g~~~v~~~~YgaSEg~~~~~~~--~~~~~~~~~~~l~~~~~~~Efip~~ 373 (588)
...++++ .+.+||. ....+++++.+ +++++ +.||+||+.+..... ....++..|.. ..+.-+++++++
T Consensus 265 ~~~~~lr---~~~~gg~~l~~~~~~~~~~~~-~~~~~-~~YG~TE~~~~~~~~~~~~~~~~~~G~p--~~~~~~~i~d~~ 337 (503)
T 4fuq_A 265 ETTGHMR---LFISGSAPLLADTHREWSAKT-GHAVL-ERYGMTETNMNTSNPYDGDRVPGAVGPA--LPGVSARVTDPE 337 (503)
T ss_dssp TTTTTCC---EEEECSSCCCHHHHHHHHHHH-SCCEE-ECCEETTTEECBCCCSSSCCCTTEEEEB--CTTCEEEEECTT
T ss_pred cchhhcE---EEEECCCCCCHHHHHHHHHHh-CCCcc-ceEcccccCcccccCCCCCCcCCccccC--CCCeEEEEEECC
Confidence 3456788 7777773 56667777778 58999 999999975433211 11112222332 233456666643
Q ss_pred CCCcccccccCCCccccccccCCCCeEEEEEcc---cccee--------------ecccCCEEEEeceeCCCCEEEEEee
Q 007815 374 LGNLESQVLCIEPKPVGLTEVKVGEEYEIIVTN---VAGLY--------------RYRLGDVVKVMGFHNSTPELKFICR 436 (588)
Q Consensus 374 ~~~~~~~~~~~~~~~l~~~eve~G~~yELVvTt---~~Gl~--------------RYr~GDvv~v~~~~~~~P~i~f~gR 436 (588)
++ .++++|+.|||+|++ +.||| +|+|||+++++. .+.+.|+||
T Consensus 338 -----------~g-----~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~g~~~TGDl~~~~~----dG~l~~~GR 397 (503)
T 4fuq_A 338 -----------TG-----KELPRGDIGMIEVKGPNVFKGYWRMPEKTKSEFRDDGFFITGDLGKIDE----RGYVHILGR 397 (503)
T ss_dssp -----------TC-----CBCCTTCCEEEEEESTTSCCCBTTCHHHHHHTBCTTSCEEEEEEEEECT----TCEEEECCS
T ss_pred -----------CC-----CCCcCCCceEEEEECCchhhhhcCChhhhHhhhCCCCCeEcceeEEEcC----CCcEEEEec
Confidence 12 256789999999976 46776 399999999975 689999999
Q ss_pred cCceeeeeeeecCHHHHHHHHHH
Q 007815 437 RNLLLTINIDKNTEKDLQLSVDE 459 (588)
Q Consensus 437 ~~d~i~~~Gekv~e~~v~~al~~ 459 (588)
.+|+|+++|++|++.+||++|.+
T Consensus 398 ~dd~ik~~G~~v~p~eIE~~l~~ 420 (503)
T 4fuq_A 398 GKDLVITGGFNVYPKEIESEIDA 420 (503)
T ss_dssp STTCEEETTEEECHHHHHHHHHT
T ss_pred CCCEEEECCEEECHHHHHHHHHh
Confidence 99999999999999999999975
No 13
>3fce_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, AMP-forming domain, adenylation, D-alanine protein ligase, ATP complex; HET: ATP; 1.90A {Bacillus cereus} PDB: 3fcc_A* 3dhv_A*
Probab=99.61 E-value=1.7e-14 Score=158.54 Aligned_cols=134 Identities=16% Similarity=0.224 Sum_probs=94.4
Q ss_pred ccCCCCceeeEEeecCc---HHHHHHHHHHhCCCCeeccccccCcccceec---CCCC----CCCcccceeeccCceEEE
Q 007815 299 ELFPNAKYLSGIMTGSM---EHYLKKLRHYAGDLPLMSADYGSSEGWIGAN---VNPS----LPPELATFAVLPNIGYFE 368 (588)
Q Consensus 299 ~lwP~L~~i~~~~~g~~---~~~~~~l~~~~g~~~v~~~~YgaSEg~~~~~---~~~~----~~~~~~~~~l~~~~~~~E 368 (588)
...++++ .+.+||. ....+++.+.|++++++ +.||+||+.+.+. .... ......|..+ .+.-+.
T Consensus 258 ~~~~~lr---~~~~~G~~l~~~~~~~~~~~~~~~~i~-~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~G~~~--~~~~~~ 331 (512)
T 3fce_A 258 SMLPNMK---TFLFCGEVLPNEVARKLIERFPKATIM-NTYGPTEATVAVTGIHVTEEVLDQYKSLPVGYCK--SDCRLL 331 (512)
T ss_dssp TTSTTCC---EEEECSSCCCHHHHHHHHHHCTTCEEE-EEECCGGGSSCSEEEECCHHHHHHCSSCCCEEEC--TTCEEE
T ss_pred hhCcccc---EEEEecCcCCHHHHHHHHHHCCCCEEE-eCcccChhhhheeeEEeccccccccCCCcccccc--CCcEEE
Confidence 3467888 6666662 66667788888889999 9999999754221 1100 0111123322 223344
Q ss_pred EEeCCCCCcccccccCCCccccccccCCCCeEEEEEcc---cccee-----------------ecccCCEEEEeceeCCC
Q 007815 369 FIPQRLGNLESQVLCIEPKPVGLTEVKVGEEYEIIVTN---VAGLY-----------------RYRLGDVVKVMGFHNST 428 (588)
Q Consensus 369 fip~~~~~~~~~~~~~~~~~l~~~eve~G~~yELVvTt---~~Gl~-----------------RYr~GDvv~v~~~~~~~ 428 (588)
+++.+ + .++++|+.|||+|++ +.||| +|+|||++++ . .
T Consensus 332 i~d~~------------g-----~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~~~~~~~TGDlg~~-~----d 389 (512)
T 3fce_A 332 IMKED------------G-----TIAPDGEKGEIVIVGPSVSVGYLGSPELTEKAFTMIDGERAYKTGDAGYV-E----N 389 (512)
T ss_dssp EECSS------------S-----CBCCTTSCEEEEEESTTSCSCBTTCHHHHHHHEEEETTEEEEEEEEEEEE-E----T
T ss_pred EECCC------------C-----CCCCCCCeEEEEEeccccChhhcCCchhhhhccccCCCCEEEeCCceEEe-c----C
Confidence 44432 1 256789999999976 46666 6999999988 3 4
Q ss_pred CEEEEEeecCceeeeeeeecCHHHHHHHHHHH
Q 007815 429 PELKFICRRNLLLTINIDKNTEKDLQLSVDEA 460 (588)
Q Consensus 429 P~i~f~gR~~d~i~~~Gekv~e~~v~~al~~~ 460 (588)
..+.|+||.+|+|+++|++|++.+||++|.+.
T Consensus 390 G~l~i~GR~~d~ik~~G~~v~p~eIE~~l~~~ 421 (512)
T 3fce_A 390 GLLFYNGRLDFQIKLHGYRMELEEIEHHLRAC 421 (512)
T ss_dssp TEEEEEEEGGGCEEETTEEECHHHHHHHHHHS
T ss_pred CEEEEecccCCEEEECCEEECHHHHHHHHHhC
Confidence 79999999999999999999999999999863
No 14
>3l8c_A D-alanine--poly(phosphoribitol) ligase subunit 1; structural genomics, DLTA, ATP-binding, cytoplasm, nucleotide-binding; 2.41A {Streptococcus pyogenes serotype M6} PDB: 3lgx_A*
Probab=99.59 E-value=1.5e-14 Score=159.15 Aligned_cols=133 Identities=17% Similarity=0.190 Sum_probs=89.6
Q ss_pred cCCCCceeeEEeecCc---HHHHHHHHHHhCCCCeeccccccCcccceecCCC-C------CCCcccceeeccCceEEEE
Q 007815 300 LFPNAKYLSGIMTGSM---EHYLKKLRHYAGDLPLMSADYGSSEGWIGANVNP-S------LPPELATFAVLPNIGYFEF 369 (588)
Q Consensus 300 lwP~L~~i~~~~~g~~---~~~~~~l~~~~g~~~v~~~~YgaSEg~~~~~~~~-~------~~~~~~~~~l~~~~~~~Ef 369 (588)
-.|+|+ .+.+||. ....+++.+.+++++++ +.||+||+.+.+.... . ......|..+ + +.-+.+
T Consensus 262 ~~~~lr---~~~~gG~~l~~~~~~~~~~~~~~~~i~-~~YG~TE~~~~~~~~~~~~~~~~~~~~~~vG~p~-~-~~~~~i 335 (521)
T 3l8c_A 262 KMPALT---HFYFDGEELTVSTARKLFERFPSAKII-NAYGPTEATVALSAIEITREMVDNYTRLPIGYPK-P-DSPTYI 335 (521)
T ss_dssp TCTTCC---EEEECSSCCCHHHHHHHHHHCTTCEEE-EEECCGGGSSCSEEEEECHHHHHHCSSCEEEEEC-T-TSCEEE
T ss_pred cCccce---EEEEecccCCHHHHHHHHHHCCCceEE-eCcCccHHhhhhceeecccccccCCCcccccccc-C-CCEEEE
Confidence 456788 6666663 56667777788789999 9999999754321100 0 0111123322 2 233445
Q ss_pred EeCCCCCcccccccCCCccccccccCCCCeEEEEEcc---cccee-----------------ecccCCEEEEeceeCCCC
Q 007815 370 IPQRLGNLESQVLCIEPKPVGLTEVKVGEEYEIIVTN---VAGLY-----------------RYRLGDVVKVMGFHNSTP 429 (588)
Q Consensus 370 ip~~~~~~~~~~~~~~~~~l~~~eve~G~~yELVvTt---~~Gl~-----------------RYr~GDvv~v~~~~~~~P 429 (588)
++.+ + .++++|+.|||+|++ +.||| +|+|||+++++. .+
T Consensus 336 ~d~~------------g-----~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~~~~~~~TGDlg~~d~----dG 394 (521)
T 3l8c_A 336 IDED------------G-----KELSSGEQGEIIVTGPAVSKGYLNNPEKTAEAFFTFKGQPAYHTGDIGSLTE----DN 394 (521)
T ss_dssp ECTT------------S-----CBCCTTCCEEEEEESTTSCSCBTTCHHHHHHHEEEETTEEEEEEEEEEEECS----SS
T ss_pred ECCC------------c-----CCCCCCCceEEEecccccChhhcCCchHhhccCcCCCCceeeeCCCEEEEeC----CC
Confidence 5432 1 256789999999977 46665 599999999985 68
Q ss_pred EEEEEeecCceeeeeeeecCHHHHHHHHHH
Q 007815 430 ELKFICRRNLLLTINIDKNTEKDLQLSVDE 459 (588)
Q Consensus 430 ~i~f~gR~~d~i~~~Gekv~e~~v~~al~~ 459 (588)
.+.|+||.+|+|+++|++|++.+||++|.+
T Consensus 395 ~l~~~GR~~d~i~~~G~~v~p~eIE~~l~~ 424 (521)
T 3l8c_A 395 ILLYGGRLDFQIKYAGYRIELEDVSQQLNQ 424 (521)
T ss_dssp CEEEEEEGGGBCC-----CBHHHHHHHHHT
T ss_pred eEEEeCcccceEeECCEEeCHHHHHHHHHc
Confidence 899999999999999999999999999975
No 15
>3kxw_A Saframycin MX1 synthetase B; fatty acid AMP ligase, SGX, acyl adenylate, structural genom 2, protein structure initiative; HET: 1ZZ; 1.85A {Legionella pneumophila subsp} PDB: 3lnv_A*
Probab=99.59 E-value=1.2e-14 Score=162.04 Aligned_cols=109 Identities=17% Similarity=0.149 Sum_probs=74.4
Q ss_pred ccCCCCeEEEEEcc---cccee----------------------ecccCCEEEEeceeCCCCEEEEEeecCceeeeeeee
Q 007815 393 EVKVGEEYEIIVTN---VAGLY----------------------RYRLGDVVKVMGFHNSTPELKFICRRNLLLTINIDK 447 (588)
Q Consensus 393 eve~G~~yELVvTt---~~Gl~----------------------RYr~GDvv~v~~~~~~~P~i~f~gR~~d~i~~~Gek 447 (588)
++++|+.|||+|++ +.||| ||+|||++++++ ..+.|+||.+|+|+++|++
T Consensus 393 ~~~~g~~GEl~v~g~~v~~GY~~~p~~t~~~f~~~~~~~~~g~~~~~TGDlg~~dd-----G~l~~~GR~dd~Ik~~G~~ 467 (590)
T 3kxw_A 393 PCDFDQVGEIWVQSNSVAKGYWNQPEETRHAFAGKIKDDERSAIYLRTGDLGFLHE-----NELYVTGRIKDLIIIYGKN 467 (590)
T ss_dssp BCCTTBCEEEEEESTTSCCCBTTCHHHHHHHHCBCCTTC---CCBEEEEEEEEEET-----TEEEEEEESSCHHHHHHHT
T ss_pred CCCCCCEEEEEEeCCcccccccCChhHHHHHHhccccCCCCCCcEEecCcEEEEEC-----CEEEEEcCccceEEECCEe
Confidence 56789999999977 46665 799999998873 6799999999999999999
Q ss_pred cCHHHHHHHHHHHHHHhhhcCCeeEeeEE--eecCCCCCceEEEEEEeccCC-CHHHHHHHHHHHHHhc
Q 007815 448 NTEKDLQLSVDEAAQLLAEEKQEVVDFTS--HVDLSTDPGHYVIFWEVSGEV-NDEVLKECCNCLDRSF 513 (588)
Q Consensus 448 v~e~~v~~al~~~~~~l~~~g~~l~~f~~--~~~~~~~~~~y~~~vE~~~~~-~~~~l~~~~~~ld~~L 513 (588)
|++.+||++|....+ ++...+..+ ..+. ....-+++++..... +....+++.+.+.+.|
T Consensus 468 v~p~eIE~~l~~~~~-----~v~~~~~~v~~~~~~--~~~~~~~~v~~~~~~~~~~~~~~l~~~l~~~l 529 (590)
T 3kxw_A 468 HYPQDIEFSLMHSPL-----HHVLGKCAAFVIQEE--HEYKLTVMCEVKNRFMDDVAQDNLFNEIFELV 529 (590)
T ss_dssp THHHHHHHHHHHSGG-----GGGEEEEEEEEEEET--TEEEEEEEEEESCTTCCHHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHhcCc-----cccCccEEEEEecCC--CCceEEEEEEeccccccchhHHHHHHHHHHHH
Confidence 999999999954432 333222322 2232 123455778775432 2334444555555544
No 16
>3g7s_A Long-chain-fatty-acid--COA ligase (FADD-1); protein structure initiative, PSI-II, NYSGXRC, 11193J, structural genomics; 2.15A {Archaeoglobus fulgidus dsm 4304}
Probab=99.58 E-value=2.1e-14 Score=159.40 Aligned_cols=134 Identities=19% Similarity=0.193 Sum_probs=82.9
Q ss_pred cCCCCceeeEEeecCc---HHHHHHHHHH----hCC--CCeeccccccCcccceecCCCC---CCCcccceeeccCceEE
Q 007815 300 LFPNAKYLSGIMTGSM---EHYLKKLRHY----AGD--LPLMSADYGSSEGWIGANVNPS---LPPELATFAVLPNIGYF 367 (588)
Q Consensus 300 lwP~L~~i~~~~~g~~---~~~~~~l~~~----~g~--~~v~~~~YgaSEg~~~~~~~~~---~~~~~~~~~l~~~~~~~ 367 (588)
-+++++ .+.+||. ....+++.+. ++. ++++ +.||+||+...+...+. ......|..+ .+.-+
T Consensus 294 ~~~~lr---~~~~gg~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~YG~TE~~~~~~~~~~~~~~~~~~~G~p~--~~~~~ 367 (549)
T 3g7s_A 294 DWSYLK---VFATGAWPVAPALVEKLLKLAAEKCNNPRLRHN-QIWGMTEACPMVTTNPPLRLDKSTTQGVPM--SDIEL 367 (549)
T ss_dssp CCTTCC---EEEEESSCCCHHHHHHHHHHHHHHSSCTTCEEE-EEEECGGGSSEEEECCGGGGGGTTSCCEEC--TTCEE
T ss_pred Ccccee---EEEeCCccCCHHHHHHHHHHHHhhcCCcccccc-ceEeccccchhhhcCCccccCcCCCccccC--CCCEE
Confidence 357788 6677762 5555666665 542 7888 99999997543322211 1112233332 33456
Q ss_pred EEEeCCCCCcccccccCCCccccccccCCCCeEEEEEcc---cccee------------------ecccCCEEEEeceeC
Q 007815 368 EFIPQRLGNLESQVLCIEPKPVGLTEVKVGEEYEIIVTN---VAGLY------------------RYRLGDVVKVMGFHN 426 (588)
Q Consensus 368 Efip~~~~~~~~~~~~~~~~~l~~~eve~G~~yELVvTt---~~Gl~------------------RYr~GDvv~v~~~~~ 426 (588)
++++++ + +. ++++|+.|||+|++ +.||| +|||||+++++.
T Consensus 368 ~i~d~~--~---------g~-----~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~~g~~~~~TGDl~~~~~--- 428 (549)
T 3g7s_A 368 KVISLE--D---------GR-----ELGVGESGEIVIRGPNIFKGYWKREKENQECWWYDEKGRKFFRTGDVGFIDE--- 428 (549)
T ss_dssp EEECSS--S---------CC-----EECTTCCEEEEEESTTSCSEETTCTTGGGTSEEECTTCCEEEEEEEEEEECT---
T ss_pred EEEeCC--C---------Cc-----CCCCCCceEEEEECcchhhhhCCChhhhhhhhhccCCCCceEccCcEEEEcC---
Confidence 666643 1 22 56789999999976 35665 799999999985
Q ss_pred CCCEEEEEeecCceeeeeeeecCHHHHHHHHHH
Q 007815 427 STPELKFICRRNLLLTINIDKNTEKDLQLSVDE 459 (588)
Q Consensus 427 ~~P~i~f~gR~~d~i~~~Gekv~e~~v~~al~~ 459 (588)
.+.+.|+||.+|+|+++|++|++.+||++|.+
T Consensus 429 -dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~ 460 (549)
T 3g7s_A 429 -EGFLHFQDRVKEVIKYKGYTIAPFELEALLMK 460 (549)
T ss_dssp -TSCEEEEEEC------------CHHHHHHHTT
T ss_pred -CceEEEeccccceEEECCEEECHHHHHHHHHh
Confidence 68999999999999999999999999999875
No 17
>2v7b_A Benzoate-coenzyme A ligase; benzoate oxidation, benzoate COA ligase; 1.84A {Burkholderia xenovorans}
Probab=99.58 E-value=8.7e-14 Score=153.46 Aligned_cols=129 Identities=11% Similarity=0.047 Sum_probs=90.7
Q ss_pred CCceeeEEeecC---cHHHHHHHHHHhCCCCeeccccccCcc-cceecCCC-CCCCcccceeeccCceEEEEEeCCCCCc
Q 007815 303 NAKYLSGIMTGS---MEHYLKKLRHYAGDLPLMSADYGSSEG-WIGANVNP-SLPPELATFAVLPNIGYFEFIPQRLGNL 377 (588)
Q Consensus 303 ~L~~i~~~~~g~---~~~~~~~l~~~~g~~~v~~~~YgaSEg-~~~~~~~~-~~~~~~~~~~l~~~~~~~Efip~~~~~~ 377 (588)
+++ .+.+|| .....+++++.+ +++++ +.||+||+ .+.+...+ .+..+..|..+ .+.-+++++.+
T Consensus 301 ~lr---~~~~gGe~l~~~~~~~~~~~~-g~~i~-~~YG~TE~~~~~~~~~~~~~~~~~~G~p~--~~~~~~i~d~~---- 369 (529)
T 2v7b_A 301 AIR---ICTSAGEALPREIGERFTAHF-GCEIL-DGIGSTEMLHIFLSNRAGAVEYGTTGRPV--PGYEIELRDEA---- 369 (529)
T ss_dssp CCC---EEEECSSCCCHHHHHHHHHHH-SCCEE-EEEECTTTSSEEEECCTTCCCTTSCCEEC--TTCEEEEECTT----
T ss_pred ceE---EEEEcCCCCCHHHHHHHHHHh-CCcee-eeEchhhcCceeeccccCCCccCCcccCC--CCCEEEEECCC----
Confidence 678 666666 266677788888 68999 99999997 33332211 12222233332 34456666532
Q ss_pred ccccccCCCccccccccCCCCeEEEEEcc---cccee-------------ecccCCEEEEeceeCCCCEEEEEeecCcee
Q 007815 378 ESQVLCIEPKPVGLTEVKVGEEYEIIVTN---VAGLY-------------RYRLGDVVKVMGFHNSTPELKFICRRNLLL 441 (588)
Q Consensus 378 ~~~~~~~~~~~l~~~eve~G~~yELVvTt---~~Gl~-------------RYr~GDvv~v~~~~~~~P~i~f~gR~~d~i 441 (588)
+ .++++|+.|||+|++ +.||| +|+|||+++++. .+.+.|+||.+|+|
T Consensus 370 --------g-----~~~~~g~~GEl~v~g~~~~~gY~~~~~~t~~~f~~~~~~TGDl~~~~~----~G~l~~~GR~dd~i 432 (529)
T 2v7b_A 370 --------G-----HAVPDGEVGDLYIKGPSAAVMYWNNREKSRATFLGEWIRSGDKYCRLP----NGCYVYAGRSDDML 432 (529)
T ss_dssp --------S-----CBCCTTSCEEEEEECTTCCCCBTTCHHHHHHHEETTEEEEEEEEEECT----TSCEEEEEEGGGCB
T ss_pred --------C-----CCCCCCCccEEEEecCCcccccCCChHHHHHhhhcCCcccCceEEECC----CccEEEeCccCCeE
Confidence 1 256789999999987 46777 499999999985 68999999999999
Q ss_pred eeeeeecCHHHHHHHHHH
Q 007815 442 TINIDKNTEKDLQLSVDE 459 (588)
Q Consensus 442 ~~~Gekv~e~~v~~al~~ 459 (588)
+++|++|++.+||++|.+
T Consensus 433 k~~G~~v~p~eIE~~l~~ 450 (529)
T 2v7b_A 433 KVSGQYVSPVEVEMVLVQ 450 (529)
T ss_dssp C----CBCHHHHHHHHTT
T ss_pred EECCEEECHHHHHHHHHh
Confidence 999999999999999975
No 18
>1mdb_A 2,3-dihydroxybenzoate-AMP ligase; adenylation domain, peptide synthetase, antibiotic biosynthesis, siderophore formation; HET: AMP DBH; 2.15A {Bacillus subtilis} SCOP: e.23.1.1 PDB: 1md9_A* 1mdf_A
Probab=99.57 E-value=6.8e-14 Score=154.98 Aligned_cols=132 Identities=14% Similarity=0.177 Sum_probs=94.2
Q ss_pred CCCCceeeEEeecCc---HHHHHHHHHHhCCCCeeccccccCcccceecCCCCC---CCcccceeeccCceEEEEEeCCC
Q 007815 301 FPNAKYLSGIMTGSM---EHYLKKLRHYAGDLPLMSADYGSSEGWIGANVNPSL---PPELATFAVLPNIGYFEFIPQRL 374 (588)
Q Consensus 301 wP~L~~i~~~~~g~~---~~~~~~l~~~~g~~~v~~~~YgaSEg~~~~~~~~~~---~~~~~~~~l~~~~~~~Efip~~~ 374 (588)
+++|+ .+++||. ....+++++.+ +++++ +.||+||+.+.+...... ..+..|..+ ++..-+.+++.+
T Consensus 297 l~~lr---~~~~gG~~l~~~~~~~~~~~~-~~~~~-~~YG~TE~~~~~~~~~~~~~~~~~~~G~p~-~~~~~~~i~d~~- 369 (539)
T 1mdb_A 297 LSSLQ---VLQVGGAKFSAEAARRVKAVF-GCTLQ-QVFGMAEGLVNYTRLDDPEEIIVNTQGKPM-SPYDESRVWDDH- 369 (539)
T ss_dssp CTTCC---EEEEESSCCCHHHHTTHHHHT-CSEEE-EEEECTTSCEEECCTTSCHHHHHHCCCEES-STTCEEEEECTT-
T ss_pred cccee---EEEEcCCCCCHHHHHHHHHHh-CCcEE-EEEcCCCCcccccCCCCcHHhcCCCCCccc-CCCceEEEECCC-
Confidence 46788 6666663 55666777778 58898 999999986554321110 011233332 222234444432
Q ss_pred CCcccccccCCCccccccccCCCCeEEEEEcc---cccee--------------ecccCCEEEEeceeCCCCEEEEEeec
Q 007815 375 GNLESQVLCIEPKPVGLTEVKVGEEYEIIVTN---VAGLY--------------RYRLGDVVKVMGFHNSTPELKFICRR 437 (588)
Q Consensus 375 ~~~~~~~~~~~~~~l~~~eve~G~~yELVvTt---~~Gl~--------------RYr~GDvv~v~~~~~~~P~i~f~gR~ 437 (588)
+ .++++|+.|||+|++ +.||| +|||||+++++. .+.+.|+||.
T Consensus 370 -----------~-----~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~g~~~TGDlg~~~~----dG~l~~~GR~ 429 (539)
T 1mdb_A 370 -----------D-----RDVKPGETGHLLTRGPYTIRGYYKAEEHNAASFTEDGFYRTGDIVRLTR----DGYIVVEGRA 429 (539)
T ss_dssp -----------S-----CBCCTTCCEEEEEECTTSCSSCTTCHHHHHHHBCTTSCEEEEEEEEECT----TSCEEEEEEG
T ss_pred -----------C-----CCCcCCCcceEEeeCcccchhhcCChhhhhhhccCCCCeecCceEEECC----CCcEEEeccc
Confidence 1 256789999999976 46666 599999999985 6789999999
Q ss_pred CceeeeeeeecCHHHHHHHHHH
Q 007815 438 NLLLTINIDKNTEKDLQLSVDE 459 (588)
Q Consensus 438 ~d~i~~~Gekv~e~~v~~al~~ 459 (588)
+|+|+++|++|++.+||++|.+
T Consensus 430 dd~ik~~G~~v~p~eIE~~l~~ 451 (539)
T 1mdb_A 430 KDQINRGGEKVAAEEVENHLLA 451 (539)
T ss_dssp GGCEECSSCEECHHHHHHHHTT
T ss_pred cceEEECCEEECHHHHHHHHHh
Confidence 9999999999999999999975
No 19
>3ivr_A Putative long-chain-fatty-acid COA ligase; structural genomics, PSI-2, protein S initiative, fatty acid synthesis; HET: GOL; 2.00A {Rhodopseudomonas palustris} SCOP: e.23.1.0
Probab=99.56 E-value=1.7e-14 Score=158.32 Aligned_cols=133 Identities=12% Similarity=0.123 Sum_probs=76.8
Q ss_pred CCCCceeeEEeecCcHHHHHHHHHHhCCCCeeccccccCcccce-ecCCCCCCCcccceeeccCceEEEEEeCCCCCccc
Q 007815 301 FPNAKYLSGIMTGSMEHYLKKLRHYAGDLPLMSADYGSSEGWIG-ANVNPSLPPELATFAVLPNIGYFEFIPQRLGNLES 379 (588)
Q Consensus 301 wP~L~~i~~~~~g~~~~~~~~l~~~~g~~~v~~~~YgaSEg~~~-~~~~~~~~~~~~~~~l~~~~~~~Efip~~~~~~~~ 379 (588)
.++++ .+.+|+.....+++++.+++++++ +.||+||+... ............|..+ .+.-+++++.+ +
T Consensus 271 l~~lr---~~~~~g~~~~~~~~~~~~~~~~~~-~~YG~TE~~~~~~~~~~~~~~~~~G~p~--~~~~~~i~d~~----~- 339 (509)
T 3ivr_A 271 LASLR---AVTGLDTPETIERFEATCPNATFW-ATFGQSETSGLSTFAPYRDRPKSAGRPL--FWRTVAVVDAE----D- 339 (509)
T ss_dssp GTTCC---EEEEECCHHHHHHHHHHCTTCEEE-EEEEEGGGTEEEEEEEGGGSTTSCCEEC--TTCEEEEECTT----S-
T ss_pred hhhhh---eecccCChHHHHHHHHhcCCCeEE-cccCccccccccccCccccCCCcccccC--CCcEEEEECCC----C-
Confidence 35678 677777777778888888789999 99999997542 2111111111234432 23445555543 1
Q ss_pred ccccCCCccccccccCCCCeEEEEEcc---ccceee-------------cccCCEEEEeceeCCCCEEEEEeec--Ccee
Q 007815 380 QVLCIEPKPVGLTEVKVGEEYEIIVTN---VAGLYR-------------YRLGDVVKVMGFHNSTPELKFICRR--NLLL 441 (588)
Q Consensus 380 ~~~~~~~~~l~~~eve~G~~yELVvTt---~~Gl~R-------------Yr~GDvv~v~~~~~~~P~i~f~gR~--~d~i 441 (588)
.++++|+.|||+|++ +.|||. |+|||+++++. .+.+.|+||. +|+|
T Consensus 340 ------------~~~~~g~~GEl~v~g~~~~~gY~~~~~~t~~~f~~g~~~TGDl~~~~~----dG~l~~~GR~d~~d~i 403 (509)
T 3ivr_A 340 ------------RPLPPGEVGEIVLRGPTVFKGYWNNAAATQHAFRNGWHHTGDMGRFDA----DGYLFYAGRAPEKELI 403 (509)
T ss_dssp ------------CBCCTTCCEEEEEESTTSCCEETTCHHHHHHHTGGGSEEEEEEEEECT----TSCEEEEEEC------
T ss_pred ------------CCCCCCCceEEEEecCCccccccCCHHHhHHHhhcCCcccccEEEECC----CceEEEeCCCCcceeE
Confidence 256789999999977 477874 99999999975 6889999999 9999
Q ss_pred eeeeeecCHHHHHHHHHHH
Q 007815 442 TINIDKNTEKDLQLSVDEA 460 (588)
Q Consensus 442 ~~~Gekv~e~~v~~al~~~ 460 (588)
+++|++|++.+||+++.+.
T Consensus 404 k~~G~~v~p~eiE~~l~~~ 422 (509)
T 3ivr_A 404 KTGGENVYPAEVEGALKQH 422 (509)
T ss_dssp -------------------
T ss_pred EECCEEECHHHHHHHHHhC
Confidence 9999999999999999875
No 20
>1t5h_X 4-chlorobenzoyl COA ligase; adenylate-forming coenzyme A ligase domain alternation confo change; 2.00A {Alcaligenes SP} SCOP: e.23.1.1 PDB: 1t5d_X 3cw9_A* 3cw8_X* 2qvz_X* 2qw0_X* 3dlp_X* 2qvx_X* 2qvy_X*
Probab=99.56 E-value=1.3e-13 Score=151.13 Aligned_cols=133 Identities=13% Similarity=0.124 Sum_probs=93.2
Q ss_pred CCCCceeeEEeecCc---HHHHHHHHHHhCCCCeeccccccCcccceecCCCCCCCcccceeeccCceEEEEEeCCCCCc
Q 007815 301 FPNAKYLSGIMTGSM---EHYLKKLRHYAGDLPLMSADYGSSEGWIGANVNPSLPPELATFAVLPNIGYFEFIPQRLGNL 377 (588)
Q Consensus 301 wP~L~~i~~~~~g~~---~~~~~~l~~~~g~~~v~~~~YgaSEg~~~~~~~~~~~~~~~~~~l~~~~~~~Efip~~~~~~ 377 (588)
+++|+ .+++||. ....+++++.+ +++++ +.||+||+.+.+... ....+..+..+ + +.-+.+++.+ ..
T Consensus 271 l~~lr---~~~~gG~~l~~~~~~~~~~~~-~~~~~-~~YG~TE~~~~~~~~-~~~~~~~g~p~-~-~~~~~i~~~~--~~ 340 (504)
T 1t5h_X 271 LDSLR---HVTFAGATMPDAVLETVHQHL-PGEKV-NIYGTTEAMNSLYMR-QPKTGTEMAPG-F-FSEVRIVRIG--GG 340 (504)
T ss_dssp CTTCC---EEEECCTTCCHHHHHHHHHHC-CSEEE-EEEEETTTEEEEEEE-SCSSSSEEBCC-T-TCCEEEECTT--SC
T ss_pred Ccccc---EEEEcCCcCCHHHHHHHHHhc-Cccee-eeecccccccccccc-CCCCCccccCC-C-CCceeEEecc--CC
Confidence 46788 6777773 66667788888 47888 999999984333211 11122222221 2 2233444433 10
Q ss_pred ccccccCCCccccccccCCCCeEEEEEc-c---ccceee-------------cccCCEEEEeceeCCCCEEEEEeecCce
Q 007815 378 ESQVLCIEPKPVGLTEVKVGEEYEIIVT-N---VAGLYR-------------YRLGDVVKVMGFHNSTPELKFICRRNLL 440 (588)
Q Consensus 378 ~~~~~~~~~~~l~~~eve~G~~yELVvT-t---~~Gl~R-------------Yr~GDvv~v~~~~~~~P~i~f~gR~~d~ 440 (588)
.. ..+++|+.|||+|+ . +.|||. |+|||+++++. .+.+.|+||.+|+
T Consensus 341 -------~~-----~~~~~g~~GEl~v~gg~~~~~GY~~~~~~t~~~f~~g~~~TGDlg~~~~----dG~l~~~GR~dd~ 404 (504)
T 1t5h_X 341 -------VD-----EIVANGEEGELIVAASDSAFVGYLNQPQATAEKLQDGWYRTSDVAVWTP----EGTVRILGRVDDM 404 (504)
T ss_dssp -------TT-----CBCCTTCCEEEEEECCTTSCCCBTTCHHHHHHHEETTEEEEEEEEEECT----TSCEEEEEEGGGC
T ss_pred -------CC-----CcCCCCCcceEEEeCCceeeceecCCchhhhhhhcCCccccCcEEEECC----CceEEEeCcccCE
Confidence 01 25678999999998 4 367874 99999999985 6789999999999
Q ss_pred eeeeeeecCHHHHHHHHHH
Q 007815 441 LTINIDKNTEKDLQLSVDE 459 (588)
Q Consensus 441 i~~~Gekv~e~~v~~al~~ 459 (588)
|+++|++|++.+||++|.+
T Consensus 405 ik~~G~~v~p~eIE~~l~~ 423 (504)
T 1t5h_X 405 IISGGENIHPSEIERVLGT 423 (504)
T ss_dssp EEETTEEECHHHHHHHHTT
T ss_pred EEECCEEECHHHHHHHHHh
Confidence 9999999999999999975
No 21
>3nyq_A Malonyl-COA ligase; A/B topology ababa sandwich beta-barrel adenylate-forming EN fold; HET: MCA AMP; 1.43A {Streptomyces coelicolor} PDB: 3nyr_A*
Probab=99.55 E-value=2.4e-13 Score=149.46 Aligned_cols=192 Identities=13% Similarity=0.119 Sum_probs=114.7
Q ss_pred CCCceeeEEeecCc---HHHHHHHHHHhCCCCeeccccccCcccceecCCCC--CCCcccceeeccCceEEEEEeCCCCC
Q 007815 302 PNAKYLSGIMTGSM---EHYLKKLRHYAGDLPLMSADYGSSEGWIGANVNPS--LPPELATFAVLPNIGYFEFIPQRLGN 376 (588)
Q Consensus 302 P~L~~i~~~~~g~~---~~~~~~l~~~~g~~~v~~~~YgaSEg~~~~~~~~~--~~~~~~~~~l~~~~~~~Efip~~~~~ 376 (588)
++++ .+.+||. ....+++++.+ +++++ +.||+||+.+....... ...+..|..+ .+.-+++++.+
T Consensus 272 ~~lr---~i~~gg~~l~~~~~~~~~~~~-~~~~~-~~YG~TE~~~~~~~~~~~~~~~~~vG~p~--~~~~~~i~d~~--- 341 (505)
T 3nyq_A 272 AGAR---LLVSGSAALPVHDHERIAAAT-GRRVI-ERYGMTETLMNTSVRADGEPRAGTVGVPL--PGVELRLVEED--- 341 (505)
T ss_dssp HHCS---EEEECSSCCCHHHHHHHHHHH-SCCCE-EEEEETTTEEEEECCTTSCCCTTCCCEEC--TTCEEEEC------
T ss_pred ccce---EEEECCCCCCHHHHHHHHHhc-CCeee-cccchhhcccccccCCCCCCCCCCcccCC--CCCEEEEECCC---
Confidence 3567 6666663 55667777778 58999 99999998654332221 1222233322 23345555432
Q ss_pred cccccccCCCccccccccCCCCeEEEEEcc---cccee--------------ecccCCEEEEeceeCCCCEEEEEeec-C
Q 007815 377 LESQVLCIEPKPVGLTEVKVGEEYEIIVTN---VAGLY--------------RYRLGDVVKVMGFHNSTPELKFICRR-N 438 (588)
Q Consensus 377 ~~~~~~~~~~~~l~~~eve~G~~yELVvTt---~~Gl~--------------RYr~GDvv~v~~~~~~~P~i~f~gR~-~ 438 (588)
+ ..+. .++.|+.|||+|++ +.||| +|||||+++++. .+.+.|+||. +
T Consensus 342 -g--------~~~~--~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~g~y~TGDl~~~~~----dG~l~~~GR~~d 406 (505)
T 3nyq_A 342 -G--------TPIA--ALDGESVGEIQVRGPNLFTEYLNRPDATAAAFTEDGFFRTGDMAVRDP----DGYVRIVGRKAT 406 (505)
T ss_dssp -----------CCC--CCCSCCCEEEEEESTTSCCEETTCHHHHHHTBCTTSCEEEEEEEEECT----TSCEEEEEESSC
T ss_pred -C--------CCcc--cCCCCceEEEEEecCchhhhhCCChhHhhhhhcCCCCCccCCeEEECC----CccEEEeCCccC
Confidence 1 2111 22348999999976 46776 499999999985 6889999997 5
Q ss_pred ceeeeeeeecCHHHHHHHHHHHHHHhhhcCCeeEeeEEeec-CCCCCceEEEEEEeccCCCHHHHHHHHHHHHHhccChh
Q 007815 439 LLLTINIDKNTEKDLQLSVDEAAQLLAEEKQEVVDFTSHVD-LSTDPGHYVIFWEVSGEVNDEVLKECCNCLDRSFVDAG 517 (588)
Q Consensus 439 d~i~~~Gekv~e~~v~~al~~~~~~l~~~g~~l~~f~~~~~-~~~~~~~y~~~vE~~~~~~~~~l~~~~~~ld~~L~n~~ 517 (588)
|+++++|++|++.+||++|.+. .+ +.+..++.. .......-+.||...........+++.+.+.+.| +.
T Consensus 407 ~~ik~~G~~v~~~eIE~~l~~~------p~--V~~a~Vv~~~~~~~g~~l~a~vv~~~~~~~~~~~~l~~~l~~~L--~~ 476 (505)
T 3nyq_A 407 DLIKSGGYKIGAGEIENALLEH------PE--VREAAVTGEPDPDLGERIVAWIVPADPAAPPALGTLADHVAARL--AP 476 (505)
T ss_dssp CCEEETTEEECHHHHHHHHTTS------TT--EEEEEEEEEEETTTEEEEEEEEEESSTTSCCCHHHHHHHHHHHT--CG
T ss_pred ceEEeCCEEECHHHHHHHHHHC------cC--ccEEEEEeeECCCCCcEEEEEEEECCCCCCCCHHHHHHHHHhhC--CC
Confidence 9999999999999999999753 23 345554322 1111123345666543212223444555555554 22
Q ss_pred hHHHhhcCCcCCeEEEEec
Q 007815 518 YVSARKVNAIGPLELRVVL 536 (588)
Q Consensus 518 Y~~~R~~g~l~p~~v~~v~ 536 (588)
| ..|-.+.+|+
T Consensus 477 ~--------~~P~~i~~v~ 487 (505)
T 3nyq_A 477 H--------KRPRVVRYLD 487 (505)
T ss_dssp G--------GSCSEEEECS
T ss_pred C--------cCccEEEEEC
Confidence 3 3455666663
No 22
>3c5e_A Acyl-coenzyme A synthetase ACSM2A, mitochondrial; middle-chain acyl-COA synthetase, xenobiotic/medium-chain FA COA ligase; HET: ATP; 1.60A {Homo sapiens} PDB: 2vze_A 3b7w_A* 3day_A* 3eq6_A* 3eyn_A* 3gpc_A* 2wd9_A*
Probab=99.54 E-value=3.1e-13 Score=150.94 Aligned_cols=131 Identities=18% Similarity=0.222 Sum_probs=94.0
Q ss_pred CCCCceeeEEeecC---cHHHHHHHHHHhCCCCeeccccccCcccceecCCCC--CCCcccceeeccCceEEEEEeCCCC
Q 007815 301 FPNAKYLSGIMTGS---MEHYLKKLRHYAGDLPLMSADYGSSEGWIGANVNPS--LPPELATFAVLPNIGYFEFIPQRLG 375 (588)
Q Consensus 301 wP~L~~i~~~~~g~---~~~~~~~l~~~~g~~~v~~~~YgaSEg~~~~~~~~~--~~~~~~~~~l~~~~~~~Efip~~~~ 375 (588)
+++|+ .+++|| .....+++++.+ +++++ +.||+||+.+.+...+. ...+..|..+ + +.-+++++.+
T Consensus 321 ~~~lr---~i~~gGe~l~~~~~~~~~~~~-g~~i~-~~YG~TE~~~~~~~~~~~~~~~~~vG~p~-~-~~~v~i~d~~-- 391 (570)
T 3c5e_A 321 FPHLQ---NCVTVGESLLPETLENWRAQT-GLDIR-ESYGQTETGLTCMVSKTMKIKPGYMGTAA-S-CYDVQIIDDK-- 391 (570)
T ss_dssp CTTCC---EEEEESSCCCHHHHHHHHHHH-SCCCE-EEEEETTTEEEEECCTTSCCCTTCCCEEC-T-TCCEEEECTT--
T ss_pred cccce---EEEEcCCcCCHHHHHHHHHHh-CCchh-hccchhhcccceecCcccccCCCcccccC-C-CceEEEECCC--
Confidence 46788 556655 366667787778 68998 99999997543322221 1222234432 2 3345555532
Q ss_pred CcccccccCCCccccccccCCCCeEEEEEc-----c---cccee-------------ecccCCEEEEeceeCCCCEEEEE
Q 007815 376 NLESQVLCIEPKPVGLTEVKVGEEYEIIVT-----N---VAGLY-------------RYRLGDVVKVMGFHNSTPELKFI 434 (588)
Q Consensus 376 ~~~~~~~~~~~~~l~~~eve~G~~yELVvT-----t---~~Gl~-------------RYr~GDvv~v~~~~~~~P~i~f~ 434 (588)
+ .+|++|+.|||+|+ . +.||| +|+|||+++++. .+.+.|+
T Consensus 392 ----------g-----~~~~~G~~GEl~v~~~~~~g~~v~~GY~~~~~~t~~~f~~~~~~TGDlg~~d~----dG~l~~~ 452 (570)
T 3c5e_A 392 ----------G-----NVLPPGTEGDIGIRVKPIRPIGIFSGYVDNPDKTAANIRGDFWLLGDRGIKDE----DGYFQFM 452 (570)
T ss_dssp ----------S-----CBCCTTCCEEEEEECSSBCCTTCCCEETTCHHHHHHTEETTEEEEEEEEEECT----TSCEEEE
T ss_pred ----------C-----CCCCCCCCCeeEEeccCCCCchhhccccCChhHhhhhhcCCccccceeEEEcC----CceEEEE
Confidence 1 25678999999997 3 35676 599999999985 6789999
Q ss_pred eecCceeeeeeeecCHHHHHHHHHH
Q 007815 435 CRRNLLLTINIDKNTEKDLQLSVDE 459 (588)
Q Consensus 435 gR~~d~i~~~Gekv~e~~v~~al~~ 459 (588)
||.+|+|+++|++|++.+||++|.+
T Consensus 453 GR~dd~Ik~~G~~V~p~eIE~~l~~ 477 (570)
T 3c5e_A 453 GRADDIINSSGYRIGPSEVENALME 477 (570)
T ss_dssp EEGGGCEEETTEEECHHHHHHHHHT
T ss_pred ecCCCEEEECCEEECHHHHHHHHHh
Confidence 9999999999999999999999985
No 23
>3rix_A Luciferase, luciferin 4-monooxygenase; oxidoreductase, photoprotein, luminescence, aspulvinone, natural product extracts; HET: 923; 1.70A {Photinus pyralis} SCOP: e.23.1.1 PDB: 1ba3_A 1lci_A* 4e5d_A* 3ies_A* 3iep_A* 3ier_A* 4g36_A* 4g37_A* 3qya_A
Probab=99.54 E-value=4.2e-14 Score=156.93 Aligned_cols=134 Identities=13% Similarity=0.090 Sum_probs=72.3
Q ss_pred CCCCceeeEEeecCc---HHHHHHHHHHhCCCCeeccccccCcccceecCCCCC--CCcccceeeccCceEEEEEeCCCC
Q 007815 301 FPNAKYLSGIMTGSM---EHYLKKLRHYAGDLPLMSADYGSSEGWIGANVNPSL--PPELATFAVLPNIGYFEFIPQRLG 375 (588)
Q Consensus 301 wP~L~~i~~~~~g~~---~~~~~~l~~~~g~~~v~~~~YgaSEg~~~~~~~~~~--~~~~~~~~l~~~~~~~Efip~~~~ 375 (588)
+++|+ .+.+||. ....+++++.+|...++ +.||+||+...+...+.. ..+..|.. . .+.-+++++++
T Consensus 306 l~~lr---~i~~gG~~l~~~~~~~~~~~~~~~~v~-~~YG~TE~~~~~~~~~~~~~~~~~vG~~-~-~~~~~~i~d~~-- 377 (550)
T 3rix_A 306 LSNLH---EIASGGAPLSKEVGEAVAKRFHLPGIR-QGYGLTETTSAILITPEGDDKPGAVGKV-V-PFFEAKVVDLD-- 377 (550)
T ss_dssp CTTCC---EEEECSSCCCHHHHHHHHHHTTCSCCE-EEEECGGGSSEEEECCTTCCCTTEEEEE-C-TTCEEEEECTT--
T ss_pred ccccc---EEEEecCCCCHHHHHHHHHHcCCCccc-cccCcCccccceecCCCCCCCCCCcccc-c-CCcEEEEEeCC--
Confidence 56888 6777773 66677788888533477 999999985433322221 22223332 2 33456666654
Q ss_pred CcccccccCCCccccccccCCCCeEEEEEcc---cccee--------------ecccCCEEEEeceeCCCCEEEEEeecC
Q 007815 376 NLESQVLCIEPKPVGLTEVKVGEEYEIIVTN---VAGLY--------------RYRLGDVVKVMGFHNSTPELKFICRRN 438 (588)
Q Consensus 376 ~~~~~~~~~~~~~l~~~eve~G~~yELVvTt---~~Gl~--------------RYr~GDvv~v~~~~~~~P~i~f~gR~~ 438 (588)
. + .++.+|+.|||+|++ +.||| +|+|||+++++. .+.+.|+||.+
T Consensus 378 ~---------~-----~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~~~~~g~~~TGDl~~~~~----dG~l~~~GR~d 439 (550)
T 3rix_A 378 T---------G-----KTLGVNQRGELCVRGPMIMSGYVNNPEATNALIDKDGWLHSGDIAYWDE----DEHFFIVDRLK 439 (550)
T ss_dssp T---------C-----CBCCTTCCEEEEEESTTSCSEETTCHHHHHHHBCTTSCEEEEEEEEECT----TCCEEEC----
T ss_pred C---------C-----cCCCCCCCeEEEEeCCCcchhhcCChhhhhhhcCCCCCeecCcEEEEeC----CceEEEEecch
Confidence 1 2 256789999999986 46666 499999999985 68999999999
Q ss_pred ceeeeeeeecCHHHHHHHHHHH
Q 007815 439 LLLTINIDKNTEKDLQLSVDEA 460 (588)
Q Consensus 439 d~i~~~Gekv~e~~v~~al~~~ 460 (588)
|+|+++|++|++.+||++|.+.
T Consensus 440 d~ik~~G~~v~p~eIE~~l~~~ 461 (550)
T 3rix_A 440 SLIKYKGYQVAPAELESILLQH 461 (550)
T ss_dssp ----------------------
T ss_pred heeEECCEEECHHHHHHHHHhC
Confidence 9999999999999999999874
No 24
>3ite_A SIDN siderophore synthetase; ligase, non-ribosomal peptide synthesis, NRPS, sidna3, fungal, endophyte; HET: MSE; 2.00A {Neotyphodium lolii}
Probab=99.54 E-value=2.3e-14 Score=159.30 Aligned_cols=134 Identities=16% Similarity=0.221 Sum_probs=72.2
Q ss_pred cCCCCceeeEEeecCc---HHHHHHHHHHhCCCCeeccccccCcccceecC---CCCCCCcccceeeccCceEEEEEeCC
Q 007815 300 LFPNAKYLSGIMTGSM---EHYLKKLRHYAGDLPLMSADYGSSEGWIGANV---NPSLPPELATFAVLPNIGYFEFIPQR 373 (588)
Q Consensus 300 lwP~L~~i~~~~~g~~---~~~~~~l~~~~g~~~v~~~~YgaSEg~~~~~~---~~~~~~~~~~~~l~~~~~~~Efip~~ 373 (588)
-.++|+ .+.+||. ....+++++.+ +++++ +.||+||+.+.... .+.......|..+ .+.-+.+++++
T Consensus 292 ~~~~lr---~~~~gG~~l~~~~~~~~~~~~-~~~~~-~~YG~TE~~~~~~~~~~~~~~~~~~~G~p~--~~~~~~i~d~~ 364 (562)
T 3ite_A 292 DAPHLV---YLGVGGEKMTPRTQQIWSSSD-RVALV-NVYGPTEVTIGCSAGRILPDSDTRCIGHPL--GDSVAHVLAPG 364 (562)
T ss_dssp GSTTCC---EEEEESSCCCHHHHHHHTTCS-SCEEE-EEECCGGGCSCSEEEECCTTSCTTEEEEEC--TTCEEEEECTT
T ss_pred ccCceE---EEEEecCCCCHHHHHHHhhCC-CcEEE-EeeccchheeeeeeeeecCCCCCccccccC--CCCeEEEEeCC
Confidence 356788 6666663 44555565555 68898 99999997542211 1222222223322 23345555543
Q ss_pred CCCcccccccCCCccccccccCCCCeEEEEEcc---cccee---------------ecccCCEEEEeceeCCCCEEEEEe
Q 007815 374 LGNLESQVLCIEPKPVGLTEVKVGEEYEIIVTN---VAGLY---------------RYRLGDVVKVMGFHNSTPELKFIC 435 (588)
Q Consensus 374 ~~~~~~~~~~~~~~~l~~~eve~G~~yELVvTt---~~Gl~---------------RYr~GDvv~v~~~~~~~P~i~f~g 435 (588)
. . .++++|+.|||+|++ +.||| +|+|||+++++. .+.+.|+|
T Consensus 365 --~---------~-----~~~~~g~~GEl~v~g~~v~~GY~~~p~~t~~~~~~g~~w~~TGDlg~~d~----dG~l~~~G 424 (562)
T 3ite_A 365 --S---------N-----EHVKKGMAGELVIEGSLVANGYLNRPDAKGFCDINGRKMYRTGDIVRMDA----DSSILFLG 424 (562)
T ss_dssp --S---------S-----CBCCTTSCEEEEEESTTSCCEESSCTTCCSEEEETTEEEEEEEEEEEECT----TSCEEEEE
T ss_pred --C---------C-----CCCCCCCceEEEEeccccchhhCCCccccccccCCCCEEEecCCEEEEcC----CCeEEEEc
Confidence 1 1 246789999999976 46776 799999999985 68999999
Q ss_pred ecCceeeeeeeecCHHHHHHHHHHH
Q 007815 436 RRNLLLTINIDKNTEKDLQLSVDEA 460 (588)
Q Consensus 436 R~~d~i~~~Gekv~e~~v~~al~~~ 460 (588)
|.+|+|+++|++|++.|||++|.+.
T Consensus 425 R~dd~Ik~~G~~v~p~eIE~~l~~~ 449 (562)
T 3ite_A 425 RKDEQVKVRGQRLELGEVSEVIRSL 449 (562)
T ss_dssp EC-----------------------
T ss_pred cccCEEeECcEEECHHHHHHHHHhc
Confidence 9999999999999999999999875
No 25
>3gqw_A Fatty acid AMP ligase; FAAL, E. coli, ATP-dependent binding enzyme family,, structural genomics, PSI-2, protein structure initiative; HET: ZZ9; 3.00A {Escherichia coli O6} PDB: 3pbk_A*
Probab=99.53 E-value=2.6e-13 Score=150.61 Aligned_cols=132 Identities=15% Similarity=0.130 Sum_probs=91.3
Q ss_pred CCCCceeeEEeecCc---HHHHHHHHHHhC-----CCCeeccccccCcccceecCCCCCC--------------------
Q 007815 301 FPNAKYLSGIMTGSM---EHYLKKLRHYAG-----DLPLMSADYGSSEGWIGANVNPSLP-------------------- 352 (588)
Q Consensus 301 wP~L~~i~~~~~g~~---~~~~~~l~~~~g-----~~~v~~~~YgaSEg~~~~~~~~~~~-------------------- 352 (588)
+++++ .+.+||. ....+++.+.++ +++++ +.||+||+.+.+...+...
T Consensus 298 l~~lr---~~~~gg~~l~~~~~~~~~~~~~~~~~~~~~~~-~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 373 (576)
T 3gqw_A 298 LSCWR---VAGIGAEPISAEQLHQFAECFRQVNFDNKTFM-PCYGLAENALAVSFSDEASGVVVNEVDRDILEYQGKAVA 373 (576)
T ss_dssp CTTCC---EEEECSSCCCHHHHHHHHHHHGGGTCCGGGEE-EEEECGGGSSEEEECCTTCCCCEEEEEHHHHHHHCBCCC
T ss_pred hhhhH---hhhccCccCCHHHHHHHHHHHhhcCCCccccc-ccCCcccccceeecccccCCccccccchhhhcccCcccc
Confidence 46788 6666763 556666777664 57888 9999999855332221110
Q ss_pred Cc----------ccceeeccCceEEEEEeCCCCCcccccccCCCccccccccCCCCeEEEEEcc---ccceee-------
Q 007815 353 PE----------LATFAVLPNIGYFEFIPQRLGNLESQVLCIEPKPVGLTEVKVGEEYEIIVTN---VAGLYR------- 412 (588)
Q Consensus 353 ~~----------~~~~~l~~~~~~~Efip~~~~~~~~~~~~~~~~~l~~~eve~G~~yELVvTt---~~Gl~R------- 412 (588)
++ ..|..+ + +.-+++++.+ + .++.+|+.|||+|++ +.|||.
T Consensus 374 ~~~~~~~~~~~~~~G~p~-~-~~~~~i~d~~------------g-----~~~~~g~~GEl~v~g~~~~~gY~~~~~~~~~ 434 (576)
T 3gqw_A 374 PGAETRAVSTFVNCGKAL-P-EHGIEIRNEA------------G-----MPVAERVVGHICISGPSLMSGYFGDQVSQDE 434 (576)
T ss_dssp CCTTCCCEEEEEBCCEEC-T-TCEEEEECTT------------S-----CBCCTTBCEEEEEESTTSCCCBTTCHHHHHH
T ss_pred cCccccCccceeecCCcC-C-CCeEEEECCC------------C-----CCCCCCCeEEEEEeCccccccccCCcccccc
Confidence 00 112211 2 2234444422 1 256789999999976 477873
Q ss_pred ------cccCCEEEEeceeCCCCEEEEEeecCceeeeeeeecCHHHHHHHHHHH
Q 007815 413 ------YRLGDVVKVMGFHNSTPELKFICRRNLLLTINIDKNTEKDLQLSVDEA 460 (588)
Q Consensus 413 ------Yr~GDvv~v~~~~~~~P~i~f~gR~~d~i~~~Gekv~e~~v~~al~~~ 460 (588)
|+|||++++ . .+.+.|+||.+|+|+++|++|++.+||++|.+.
T Consensus 435 ~~~~g~~~TGDl~~~-~----dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~ 483 (576)
T 3gqw_A 435 IAATGWLDTGDLGYL-L----DGYLYVTGRIKDLIIIRGRNIWPQDIEYIAEQE 483 (576)
T ss_dssp HHHHSCEEEEEEEEE-E----TTEEEEEEETTTCEEETTEEECHHHHHHHHTTS
T ss_pred ccCCCeeeccceEEE-E----CCEEEEEecCcceEEECCEEECHHHHHHHHHhC
Confidence 999999988 3 479999999999999999999999999999864
No 26
>1amu_A GRSA, gramicidin synthetase 1; peptide synthetase, adenylate forming; HET: PHE AMP; 1.90A {Brevibacillus brevis} SCOP: e.23.1.1
Probab=99.52 E-value=3.1e-13 Score=150.74 Aligned_cols=132 Identities=11% Similarity=0.176 Sum_probs=87.8
Q ss_pred CCCCceeeEEeecCcHHHHHHHHHHhCCCCeeccccccCcccce-ecC--CCCC--CCcccceeeccCceEEEEEeCCCC
Q 007815 301 FPNAKYLSGIMTGSMEHYLKKLRHYAGDLPLMSADYGSSEGWIG-ANV--NPSL--PPELATFAVLPNIGYFEFIPQRLG 375 (588)
Q Consensus 301 wP~L~~i~~~~~g~~~~~~~~l~~~~g~~~v~~~~YgaSEg~~~-~~~--~~~~--~~~~~~~~l~~~~~~~Efip~~~~ 375 (588)
.++|+ .+.+||.....+.++.+...++++ +.||+||+.+. ... .... .....|..+ + +.-+.+++.+
T Consensus 292 ~~~lr---~~~~gG~~l~~~~~~~~~~~~~~~-~~YG~TE~~~~~~~~~~~~~~~~~~~~vG~p~-~-~~~v~i~d~~-- 363 (563)
T 1amu_A 292 ILSIQ---TLITAGSATSPSLVNKWKEKVTYI-NAYGPTETTICATTWVATKETIGHSVPIGAPI-Q-NTQIYIVDEN-- 363 (563)
T ss_dssp CCSCS---EEEEESSCCCHHHHHHHTTTSEEE-EEECCGGGSSCSEEEECCSSCCCSSCCCBEEC-T-TEEEEEECTT--
T ss_pred ccccc---EEEEEEecCCHHHHHHHHhCCeEE-EEECcCHHhHhheeeecccccCCCCCccccee-C-CCEEEEECCC--
Confidence 35688 666666422222233333347888 99999997532 211 1111 111234432 2 3334444432
Q ss_pred CcccccccCCCccccccccCCCCeEEEEEcc---cccee--------------------ecccCCEEEEeceeCCCCEEE
Q 007815 376 NLESQVLCIEPKPVGLTEVKVGEEYEIIVTN---VAGLY--------------------RYRLGDVVKVMGFHNSTPELK 432 (588)
Q Consensus 376 ~~~~~~~~~~~~~l~~~eve~G~~yELVvTt---~~Gl~--------------------RYr~GDvv~v~~~~~~~P~i~ 432 (588)
+ .++++|+.|||+|++ +.||| ||+|||+++++. .+.+.
T Consensus 364 ----------~-----~~~~~g~~GEl~v~g~~v~~GY~~~pe~t~~~f~~~~~~~g~~w~~TGDlg~~d~----dG~l~ 424 (563)
T 1amu_A 364 ----------L-----QLKSVGEAGELCIGGEGLARGYWKRPELTSQKFVDNPFVPGEKLYKTGDQARWLS----DGNIE 424 (563)
T ss_dssp ----------S-----CBCCTTCEEEEEEEETTCCCEETTCHHHHHHHEEECSSSTTSEEEEEEEEEEECT----TSCEE
T ss_pred ----------c-----CCCCCCCcEEEEEechhhChhhCCCchhhhhhcccCCCCCCCEEEecCCEEEEcC----CCeEE
Confidence 1 246789999999976 35665 799999999985 68899
Q ss_pred EEeecCceeeeeeeecCHHHHHHHHHH
Q 007815 433 FICRRNLLLTINIDKNTEKDLQLSVDE 459 (588)
Q Consensus 433 f~gR~~d~i~~~Gekv~e~~v~~al~~ 459 (588)
|+||.+|+|+++|++|++.+||++|.+
T Consensus 425 i~GR~~d~Ik~~G~~V~p~eIE~~l~~ 451 (563)
T 1amu_A 425 YLGRIDNQVKIRGHRVELEEVESILLK 451 (563)
T ss_dssp EEEEGGGEEEETTEEEEHHHHHHHHTT
T ss_pred EeccccCEEEECCEEeCHHHHHHHHHh
Confidence 999999999999999999999999975
No 27
>1pg4_A Acetyl-COA synthetase; AMP-forming, adenylate-forming, thioester-forming, ligase; HET: COA PRX; 1.75A {Salmonella enterica} SCOP: e.23.1.1 PDB: 1pg3_A* 2p2f_A* 2p2b_A* 2p2q_A* 2p2j_A* 2p20_A* 2p2m_A*
Probab=99.51 E-value=2.6e-13 Score=153.96 Aligned_cols=228 Identities=11% Similarity=0.055 Sum_probs=130.7
Q ss_pred CCCCceeeEEeecCc---HHHHHHHHHHhC--CCCeeccccccCcccceecCC-CC---CCCcccceeeccCceEEEEEe
Q 007815 301 FPNAKYLSGIMTGSM---EHYLKKLRHYAG--DLPLMSADYGSSEGWIGANVN-PS---LPPELATFAVLPNIGYFEFIP 371 (588)
Q Consensus 301 wP~L~~i~~~~~g~~---~~~~~~l~~~~g--~~~v~~~~YgaSEg~~~~~~~-~~---~~~~~~~~~l~~~~~~~Efip 371 (588)
.++|+ .+.+||. ....+.+.+.+| +++++ +.||+||+...+... +. ..++..|..+ ++ .-+.+++
T Consensus 377 l~sLr---~i~~gGe~l~~~~~~~~~~~~g~~~~~i~-~~YG~TE~~~~~~~~~~~~~~~~~~s~G~p~-~g-~~v~i~d 450 (652)
T 1pg4_A 377 RSSLR---ILGSVGEPINPEAWEWYWKKIGKEKCPVV-DTWWQTETGGFMITPLPGAIELKAGSATRPF-FG-VQPALVD 450 (652)
T ss_dssp CTTCC---EEEEESSCCCHHHHHHHHHHTTTTCSCEE-EEBCCGGGSSCSBCCCTTTCCBCTTCCBSBC-TT-CCEEEEC
T ss_pred cCceE---EEEEecCCCCHHHHHHHHHHhCCCCCcEE-ccccCcccccceecCCCCCcCccCCccccCc-CC-CeEEEEC
Confidence 46788 6666663 556667777774 28999 999999975322111 11 1122233322 22 2344444
Q ss_pred CCCCCcccccccCCCccccccccCCCCeEEEEEcc-----cccee----------------ecccCCEEEEeceeCCCCE
Q 007815 372 QRLGNLESQVLCIEPKPVGLTEVKVGEEYEIIVTN-----VAGLY----------------RYRLGDVVKVMGFHNSTPE 430 (588)
Q Consensus 372 ~~~~~~~~~~~~~~~~~l~~~eve~G~~yELVvTt-----~~Gl~----------------RYr~GDvv~v~~~~~~~P~ 430 (588)
.+ + .+++.|+.|||+|+. ..||| +|+|||+++++. .+.
T Consensus 451 ~~------------g-----~~v~~g~~GEl~i~g~~p~~~~gY~~~~e~~~~~~~~~~~g~y~TGDlg~~d~----dG~ 509 (652)
T 1pg4_A 451 NE------------G-----HPQEGATEGNLVITDSWPGQARTLFGDHERFEQTYFSTFKNMYFSGDGARRDE----DGY 509 (652)
T ss_dssp TT------------C-----CBCCSSEEEEEEECSCCTTCCCEETTCHHHHHHHHHSSSTTSEEEEEEEEECT----TSC
T ss_pred CC------------C-----CCcCCCceEEEEEccCCCchhhhhcCCHHHHHhhhhhcCCCEEECCcEEEEcC----CCc
Confidence 32 1 256779999999977 24454 499999999985 689
Q ss_pred EEEEeecCceeeeeeeecCHHHHHHHHHHHHHHhhhcCCeeEeeEEee--cCCCCCceEEEEEEeccC--CCHHHHHHHH
Q 007815 431 LKFICRRNLLLTINIDKNTEKDLQLSVDEAAQLLAEEKQEVVDFTSHV--DLSTDPGHYVIFWEVSGE--VNDEVLKECC 506 (588)
Q Consensus 431 i~f~gR~~d~i~~~Gekv~e~~v~~al~~~~~~l~~~g~~l~~f~~~~--~~~~~~~~y~~~vE~~~~--~~~~~l~~~~ 506 (588)
+.|+||.||+|+++|++|++.|||++|.+. .+ |.+..++. +.. ....-+.||.+..+ .+.+..+++.
T Consensus 510 l~i~GR~dd~Ik~~G~rI~~~eIE~~l~~~------p~--V~ea~Vvg~~~~~-~g~~l~a~Vv~~~~~~~~~~~~~~l~ 580 (652)
T 1pg4_A 510 YWITGRVDDVLNVSGHRLGTAEIESALVAH------PK--IAEAAVVGIPHAI-KGQAIYAYVTLNHGEEPSPELYAEVR 580 (652)
T ss_dssp EEEEEESSSEEEETTEEEEHHHHHHHHHHS------TT--EEEEEEEEEEETT-TEEEEEEEEEECTTCCCCHHHHHHHH
T ss_pred EEEEecCCCEEEECCEEECHHHHHHHHHhC------CC--cceEEEEEEEcCC-CCeEEEEEEEECCCCCCCHHHHHHHH
Confidence 999999999999999999999999999753 23 44555432 211 11234466766433 2333344455
Q ss_pred HHHHHhccChhhHHHhhcCCcCCeEEEEecc------chHH--HHHHHHhcCCCCCCCCCCCcccCCCCHHHHHHHhccc
Q 007815 507 NCLDRSFVDAGYVSARKVNAIGPLELRVVLK------GTFQ--QILDHYLGLGAALSQFKTPRCVGPTNKTVLQILCNNI 578 (588)
Q Consensus 507 ~~ld~~L~n~~Y~~~R~~g~l~p~~v~~v~~------gtf~--~~~~~~~~~G~~~~Q~K~Pr~~~~~~~~~~~~l~~~~ 578 (588)
+.+.+.| +.| ..|-.|.+|+. |-.. .+++. ..+. ..+++.+--+. |++.++.+.+.+
T Consensus 581 ~~l~~~l--~~~--------~~P~~i~~v~~lP~T~sGKi~R~~L~~~--~~~~-~~~~~~~~~l~--~p~~~~~~~~~~ 645 (652)
T 1pg4_A 581 NWVRKEI--GPL--------ATPDVLHWTDSLPKTRSGKIMRRILRKI--AAGD-TSNLGDTSTLA--DPGVVEKLLEEK 645 (652)
T ss_dssp HHHHHHT--CGG--------GCCSEEEECSCCCBCTTSCBCHHHHHHH--HHTC-----------C--CTTHHHHHHHHH
T ss_pred HHHHHhC--CCC--------cCCeEEEEcCCCCCCCCccchHHHHHHH--HhCC-CCCCCCccccC--CHHHHHHHHHHh
Confidence 5555543 222 34556666542 3322 22222 1221 13556667778 889998887644
Q ss_pred c
Q 007815 579 G 579 (588)
Q Consensus 579 ~ 579 (588)
.
T Consensus 646 ~ 646 (652)
T 1pg4_A 646 Q 646 (652)
T ss_dssp H
T ss_pred h
Confidence 3
No 28
>3r44_A Fatty acyl COA synthetase FADD13 (fatty-acyl-COA synthetase); ligase; HET: HIS; 1.80A {Mycobacterium tuberculosis} PDB: 3t5c_A 3t5b_A
Probab=99.51 E-value=1.5e-13 Score=151.38 Aligned_cols=129 Identities=14% Similarity=0.139 Sum_probs=88.5
Q ss_pred CCCCceeeEEeecCc---HHHHHHHHHHhCCCCeeccccccCcccceecC-CC---CCCCcccceeeccCceEEEEEeCC
Q 007815 301 FPNAKYLSGIMTGSM---EHYLKKLRHYAGDLPLMSADYGSSEGWIGANV-NP---SLPPELATFAVLPNIGYFEFIPQR 373 (588)
Q Consensus 301 wP~L~~i~~~~~g~~---~~~~~~l~~~~g~~~v~~~~YgaSEg~~~~~~-~~---~~~~~~~~~~l~~~~~~~Efip~~ 373 (588)
.|+|+ .+++||. ....+++++. +++++ +.||+||+...... .. ....+..|..+ .+.-+++++.+
T Consensus 283 ~~~lr---~i~~gGe~l~~~~~~~~~~~--~~~~~-~~YG~TE~~~~~~~~~~~~~~~~~~~~G~~~--~~~~~~i~d~~ 354 (517)
T 3r44_A 283 APDFR---YFITGGAPMPEALIKIYAAK--NIEVV-QGYALTESCGGGTLLLSEDALRKAGSAGRAT--MFTDVAVRGDD 354 (517)
T ss_dssp CTTCC---EEEECSSCCCHHHHHHHHHT--TCEEE-EEEECGGGTTCEEEECGGGTTTTTTCCBEEC--TTEEEEEECTT
T ss_pred CCccc---EEEECCCCCCHHHHHHHHhc--CCcEE-EeecccccccceeecCCccccccCCCCCcCC--CCeEEEEECCC
Confidence 46788 7777773 4455555543 68898 99999997442211 11 11222233322 22233443322
Q ss_pred CCCcccccccCCCccccccccCCCCeEEEEEcc---cccee-------------ecccCCEEEEeceeCCCCEEEEEeec
Q 007815 374 LGNLESQVLCIEPKPVGLTEVKVGEEYEIIVTN---VAGLY-------------RYRLGDVVKVMGFHNSTPELKFICRR 437 (588)
Q Consensus 374 ~~~~~~~~~~~~~~~l~~~eve~G~~yELVvTt---~~Gl~-------------RYr~GDvv~v~~~~~~~P~i~f~gR~ 437 (588)
+. .++.| .|||+|++ +.||| +|+|||+++++. .+.+.|+||.
T Consensus 355 ------------~~-----~~~~g-~GEl~v~g~~v~~GY~~~p~~t~~~f~~g~~~TGDl~~~~~----dG~l~~~GR~ 412 (517)
T 3r44_A 355 ------------GV-----IREHG-EGEVVIKSDILLKEYWNRPEATRDAFDNGWFRTGDIGEIDD----EGYLYIKDRL 412 (517)
T ss_dssp ------------SC-----EESSE-EEEEEEEETTSCSEETTCHHHHHHTEETTEEEEEEEEEECT----TSCEEEEECG
T ss_pred ------------CC-----CCCCC-CeEEEEeCcchhhhhCCChhhhHhhhcCCCEecceeEEEcC----CeeEEEecCC
Confidence 12 34567 89999977 47777 499999999985 6899999999
Q ss_pred CceeeeeeeecCHHHHHHHHHH
Q 007815 438 NLLLTINIDKNTEKDLQLSVDE 459 (588)
Q Consensus 438 ~d~i~~~Gekv~e~~v~~al~~ 459 (588)
+|+|+++|++|++.+||++|.+
T Consensus 413 dd~ik~~G~~v~p~eIE~~l~~ 434 (517)
T 3r44_A 413 KDMIISGGENVYPAEIESVIIG 434 (517)
T ss_dssp GGCEEETTEEECHHHHHHHHTT
T ss_pred cCEEEECCEEECHHHHHHHHHh
Confidence 9999999999999999999875
No 29
>4gr5_A Non-ribosomal peptide synthetase; MBTH-like domain, adenylation domain, ligase, rossmann fold, binding; HET: APC TLA; 1.92A {Streptomyces lydicus} PDB: 4gr4_A
Probab=99.51 E-value=7.1e-14 Score=155.86 Aligned_cols=133 Identities=17% Similarity=0.122 Sum_probs=70.8
Q ss_pred CCCCceeeEEeecCc---HHHHHHHHHHhCCCCeeccccccCcccceec---CCCC---CCCcccceeeccCceEEEEEe
Q 007815 301 FPNAKYLSGIMTGSM---EHYLKKLRHYAGDLPLMSADYGSSEGWIGAN---VNPS---LPPELATFAVLPNIGYFEFIP 371 (588)
Q Consensus 301 wP~L~~i~~~~~g~~---~~~~~~l~~~~g~~~v~~~~YgaSEg~~~~~---~~~~---~~~~~~~~~l~~~~~~~Efip 371 (588)
+++|+ .+++||. ....+++.+.+++++++ +.||+||+..... .... ......|..+ .+.-+.+++
T Consensus 325 ~~~lr---~~~~gG~~l~~~~~~~~~~~~~~~~l~-~~YG~TE~~~~~~~~~~~~~~~~~~~~~iG~p~--~~~~v~i~d 398 (570)
T 4gr5_A 325 FEGVR---YAITGGEPASVPHVAKARRDHPALRLG-NGYGPAESMGFTTHHAVVAGDLSGTALPIGVPL--AGKRAYVLD 398 (570)
T ss_dssp GTTCS---EEEEESSCCCHHHHHHHHHHCTTCEEE-EEECCGGGCSCSEEEECCGGGTTSSSCCCBEEC--TTEEEEEEC
T ss_pred CCCce---EEEEecccCCHHHHHHHHHhCCCcEEE-EeechhhheeeeeeeeecccccCCCccccceee--CCCEEEEEC
Confidence 56788 6666763 45566677777789999 9999999743211 1110 0111123322 233344444
Q ss_pred CCCCCcccccccCCCccccccccCCCCeEEEEEcc---cccee----------------------ecccCCEEEEeceeC
Q 007815 372 QRLGNLESQVLCIEPKPVGLTEVKVGEEYEIIVTN---VAGLY----------------------RYRLGDVVKVMGFHN 426 (588)
Q Consensus 372 ~~~~~~~~~~~~~~~~~l~~~eve~G~~yELVvTt---~~Gl~----------------------RYr~GDvv~v~~~~~ 426 (588)
.+ + .++.+|+.|||+|++ +.||| +|||||+++++.
T Consensus 399 ~~----~-------------~~~~~G~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~~~~~~~~~w~~TGDlg~~d~--- 458 (570)
T 4gr5_A 399 DD----L-------------KPAANGALGELYVAGAGLAHGYVSRPALTAERFVADPFAGPGGERMYRTGDLARRRA--- 458 (570)
T ss_dssp TT----S-------------CBCCTTCEEEEEEEETTCCCEETTCHHHHHHHEEECTTCCSSCCEEEEEEEEEEECT---
T ss_pred CC----C-------------CCCCCCCcEEEEEeecccchhcCCCchhhhcccccCCCCCCCCCEEEeCCCeEEECC---
Confidence 22 1 256789999999976 46665 599999999985
Q ss_pred CCCEEEEEeecCceeeeeeeecCHHHHHHHHHHH
Q 007815 427 STPELKFICRRNLLLTINIDKNTEKDLQLSVDEA 460 (588)
Q Consensus 427 ~~P~i~f~gR~~d~i~~~Gekv~e~~v~~al~~~ 460 (588)
.+.+.|+||.+|+|+++|++|++.+||++|.+.
T Consensus 459 -dG~l~~~GR~~d~Ik~~G~~v~p~eIE~~l~~~ 491 (570)
T 4gr5_A 459 -DGVLEYVGRADDQVKIRGFRVEPGEVEARLVGH 491 (570)
T ss_dssp -TSCEEEEEC------------------------
T ss_pred -CCeEEEEcccCCEEEECcEEeCHHHHHHHHhcC
Confidence 689999999999999999999999999999864
No 30
>1ry2_A Acetyl-coenzyme A synthetase 1, acyl-activating enzyme 1; AMP forming, related to firefly luciferase, ligase; HET: AMP; 2.30A {Saccharomyces cerevisiae} SCOP: e.23.1.1
Probab=99.50 E-value=3e-13 Score=153.88 Aligned_cols=229 Identities=11% Similarity=0.096 Sum_probs=126.7
Q ss_pred CCCCceeeEEeecCc---HHHHHHHHHHhC--CCCeeccccccCcccc--eecCC-C--CCCCcccceeeccCceEEEEE
Q 007815 301 FPNAKYLSGIMTGSM---EHYLKKLRHYAG--DLPLMSADYGSSEGWI--GANVN-P--SLPPELATFAVLPNIGYFEFI 370 (588)
Q Consensus 301 wP~L~~i~~~~~g~~---~~~~~~l~~~~g--~~~v~~~~YgaSEg~~--~~~~~-~--~~~~~~~~~~l~~~~~~~Efi 370 (588)
.++|+ .+.+||. ....+.+.+.+| +++++ +.||+||+.. ..+.. . ...++..|..+ + +.-++++
T Consensus 383 l~sLr---~i~~gGe~l~~~~~~~~~~~~g~~~~~i~-~~YG~TE~~~~~~~~~~~~~~~~~~gs~G~p~-~-g~~v~i~ 456 (663)
T 1ry2_A 383 LKSLR---CLGSVGEPIAAEVWEWYSEKIGKNEIPIV-DTYWQTESGSHLVTPLAGGVTPMKPGSASFPF-F-GIDAVVL 456 (663)
T ss_dssp CTTCC---EEEECSSCCCHHHHHHHHHTTSCSSSCEE-ECBCCTTTCSCSEECCTTTCCCCCTTCCCEEC-T-TCCEEEE
T ss_pred cCceE---EEEEEcCCCCHHHHHHHHHHhCCCCceEE-EeECCccccCeeeccCCCCCcccCCCccccCc-C-CCeEEEE
Confidence 46788 7777773 556667777774 38999 9999999743 22211 0 11222233332 2 2334555
Q ss_pred eCCCCCcccccccCCCccccccccCC-CCeEEEEEcc-----cccee----------------ecccCCEEEEeceeCCC
Q 007815 371 PQRLGNLESQVLCIEPKPVGLTEVKV-GEEYEIIVTN-----VAGLY----------------RYRLGDVVKVMGFHNST 428 (588)
Q Consensus 371 p~~~~~~~~~~~~~~~~~l~~~eve~-G~~yELVvTt-----~~Gl~----------------RYr~GDvv~v~~~~~~~ 428 (588)
+.+ + ++ ++.. |+.|||+|+. +.||| +|+|||+++++. .
T Consensus 457 d~~---~--------g~-----~v~~~g~~Gel~i~g~~p~~~~gy~~~~~~~~~~~~~~~~g~y~TGDlg~~d~----d 516 (663)
T 1ry2_A 457 DPN---T--------GE-----ELNTSHAEGVLAVKAAWPSFARTIWKNHDRYLDTYLNPYPGYYFTGDGAAKDK----D 516 (663)
T ss_dssp CSS---S--------TT-----CEECSSCEEEEEESSCCTTSCCEETTCHHHHHHHHTSSSTTSEEEEEEEEECT----T
T ss_pred cCC---C--------CC-----cCCCCCcceEEEEecCCCchhcccccChHHHHHhhhcCCCCEEEcCCEEEEcC----C
Confidence 542 1 22 3455 8999999976 24554 499999999985 6
Q ss_pred CEEEEEeecCceeeeeeeecCHHHHHHHHHHHHHHhhhcCCeeEeeEEeecCCC-CCceEEEEEEeccCCC-----H---
Q 007815 429 PELKFICRRNLLLTINIDKNTEKDLQLSVDEAAQLLAEEKQEVVDFTSHVDLST-DPGHYVIFWEVSGEVN-----D--- 499 (588)
Q Consensus 429 P~i~f~gR~~d~i~~~Gekv~e~~v~~al~~~~~~l~~~g~~l~~f~~~~~~~~-~~~~y~~~vE~~~~~~-----~--- 499 (588)
+.+.|+||.+|+|+++|++|++.|||++|.+. .+ |.+..++..... ....-+.||.+..+.. .
T Consensus 517 G~l~i~GR~dd~Ik~~G~rI~~~eIE~~l~~~------p~--V~ea~Vvg~~~~~~g~~~~a~Vv~~~~~~~~~~~~~~~ 588 (663)
T 1ry2_A 517 GYIWILGRVDDVVNVSGHRLSTAEIEAAIIED------PI--VAECAVVGFNDDLTGQAVAAFVVLKNKSSWSTATDDEL 588 (663)
T ss_dssp CCEEECSCTTSCBCSSSCCBCHHHHHHHHHSS------TT--EEEEEEECCCCCTTSCCCEEEEEEC------------C
T ss_pred CCEEEEeecCCEEEECCEEcCHHHHHHHHHhC------CC--cceEEEEEEecCCCCeEEEEEEEEcCCCccccccchhH
Confidence 88999999999999999999999999999742 23 445555432111 1112345666543211 1
Q ss_pred -HHHHHHHHHHHHhccChhhHHHhhcCCcCCeEEEEecc------chHHHHHHHHhcCCCCCCCCCCCcccCCCCHHHHH
Q 007815 500 -EVLKECCNCLDRSFVDAGYVSARKVNAIGPLELRVVLK------GTFQQILDHYLGLGAALSQFKTPRCVGPTNKTVLQ 572 (588)
Q Consensus 500 -~~l~~~~~~ld~~L~n~~Y~~~R~~g~l~p~~v~~v~~------gtf~~~~~~~~~~G~~~~Q~K~Pr~~~~~~~~~~~ 572 (588)
+..+++.+.+.+.| .....|-+|.+|+. |-..+-.=..+..+. ..+++.+-.+. |++.++
T Consensus 589 ~~l~~~l~~~l~~~L----------~~~~~P~~i~~v~~lP~T~sGKi~R~~L~~~~~~~-~~~~~~~~~l~--~p~~~~ 655 (663)
T 1ry2_A 589 QDIKKHLVFTVRKDI----------GPFAAPKLIILVDDLPKTRSGKIMRRILRKILAGE-SDQLGDVSTLS--NPGIVR 655 (663)
T ss_dssp CSHHHHHHHHHHHHT----------CTTTSCSEEEECSCCCBCTTSCBCHHHHHHSCC----------------CCHHHH
T ss_pred HHHHHHHHHHHHHhC----------CCCcCCeEEEEcCCCCCCCccCchHHHHHHHHcCC-CCCCCCccccc--CHHHHH
Confidence 12333433344332 12345666777642 332221111112232 12677788888 999999
Q ss_pred HHhc
Q 007815 573 ILCN 576 (588)
Q Consensus 573 ~l~~ 576 (588)
.+.+
T Consensus 656 ~~~~ 659 (663)
T 1ry2_A 656 HLID 659 (663)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8875
No 31
>3ipl_A 2-succinylbenzoate--COA ligase; structural genomics, acyl-protein synthetase, PSI-2, protein structure initiative; 2.30A {Staphylococcus aureus subsp}
Probab=99.49 E-value=1.4e-12 Score=142.81 Aligned_cols=124 Identities=13% Similarity=0.195 Sum_probs=84.8
Q ss_pred CCceeeEEeecCc---HHHHHHHHHHhCCCCeeccccccCcccc-eecCCCC---CCCcccceeeccCceEEEEEeCCCC
Q 007815 303 NAKYLSGIMTGSM---EHYLKKLRHYAGDLPLMSADYGSSEGWI-GANVNPS---LPPELATFAVLPNIGYFEFIPQRLG 375 (588)
Q Consensus 303 ~L~~i~~~~~g~~---~~~~~~l~~~~g~~~v~~~~YgaSEg~~-~~~~~~~---~~~~~~~~~l~~~~~~~Efip~~~~ 375 (588)
+|+ .+.+||. ....+++.+ + +++++ +.||+||+.. .+...+. ...+..|..+ + +.-++++++
T Consensus 275 ~lr---~i~~gG~~l~~~~~~~~~~-~-~~~~~-~~YG~TE~~~~~~~~~~~~~~~~~~~~G~p~-~-~~~~~i~d~--- 343 (501)
T 3ipl_A 275 NLQ---KILLGGAKLSATMIETALQ-Y-NLPIY-NSFGMTETCSQFLTATPEMLHARPDTVGMPS-A-NVDVKIKNP--- 343 (501)
T ss_dssp TCC---EEEECSSCCCHHHHHHHHH-T-TCCEE-EEEEEGGGTEEEEEECHHHHHHCTTCCBEEC-T-TCEEEEESC---
T ss_pred ccc---EEEEeCCCCCHHHHHHHHH-h-CCCEe-ccccccccccceeecCccccccCCCCCCCCC-C-CcEEEEecC---
Confidence 688 6677763 455555655 4 68999 9999999643 2221111 0111223321 2 223333322
Q ss_pred CcccccccCCCccccccccCCCCeEEEEEcc---ccceee------------cccCCEEEEeceeCCCCEEEEEeecCce
Q 007815 376 NLESQVLCIEPKPVGLTEVKVGEEYEIIVTN---VAGLYR------------YRLGDVVKVMGFHNSTPELKFICRRNLL 440 (588)
Q Consensus 376 ~~~~~~~~~~~~~l~~~eve~G~~yELVvTt---~~Gl~R------------Yr~GDvv~v~~~~~~~P~i~f~gR~~d~ 440 (588)
.+|+.|||+|+. +.|||. |+|||+++++. .+.+.|+||.+|+
T Consensus 344 -------------------~~~~~GEl~v~g~~~~~gY~~~~~~t~~~~~g~~~TGDl~~~~~----~G~l~~~GR~dd~ 400 (501)
T 3ipl_A 344 -------------------NKEGHGELMIKGANVMNGYLYPTDLTGTFENGYFNTGDIAEIDH----EGYVMIYDRRKDL 400 (501)
T ss_dssp -------------------CSSCCEEEEEESTTSCSCCSBSTTCCCSEETTEEEEEEEEEECT----TSCEEEEEECCCC
T ss_pred -------------------CCCCccEEEEeccchhhhhCcChhhcchhcCCceecCCEEEEcC----CCeEEEEccccce
Confidence 146789999976 467773 99999999975 6899999999999
Q ss_pred eeeeeeecCHHHHHHHHHHH
Q 007815 441 LTINIDKNTEKDLQLSVDEA 460 (588)
Q Consensus 441 i~~~Gekv~e~~v~~al~~~ 460 (588)
|+++|++|++.+||+++.+.
T Consensus 401 ik~~G~~v~p~eiE~~l~~~ 420 (501)
T 3ipl_A 401 IISGGENIYPYQIETVAKQF 420 (501)
T ss_dssp EECSSCEECHHHHHHHHTTS
T ss_pred EEECCEEECHHHHHHHHHhC
Confidence 99999999999999988753
No 32
>3rg2_A Enterobactin synthase component E (ENTE), 2,3-DIH dihydroxybenzoate synthetase, isochroismatase...; adenylate-forming enzymes, ANL superfamily; HET: SVS PNS; 3.10A {Escherichia coli}
Probab=99.49 E-value=2.5e-13 Score=152.96 Aligned_cols=133 Identities=12% Similarity=0.127 Sum_probs=94.3
Q ss_pred cCCCCceeeEEeecC---cHHHHHHHHHHhCCCCeeccccccCcccceecCCCCCC---CcccceeeccCceEEEEEeCC
Q 007815 300 LFPNAKYLSGIMTGS---MEHYLKKLRHYAGDLPLMSADYGSSEGWIGANVNPSLP---PELATFAVLPNIGYFEFIPQR 373 (588)
Q Consensus 300 lwP~L~~i~~~~~g~---~~~~~~~l~~~~g~~~v~~~~YgaSEg~~~~~~~~~~~---~~~~~~~l~~~~~~~Efip~~ 373 (588)
-.++|+ .+.+|| .....+++.+.+ +++++ +.||+||+.+......... ....|..+.+ +.-+.+++.+
T Consensus 300 ~l~~lr---~i~~gGe~l~~~~~~~~~~~~-~~~~~-~~YG~tE~~~~~~~~~~~~~~~~~~~G~p~~~-~~~~~i~d~~ 373 (617)
T 3rg2_A 300 QLASLK---LLQVGGARLSATLAARIPAEI-GCQLQ-QVFGMAEGLVNYTRLDDSAEKIIHTQGYPMCP-DDEVWVADAE 373 (617)
T ss_dssp TTTTCC---EEEEESSCCCHHHHHHHHHHT-CSEEE-EEEEETTEEEEECCTTSCHHHHHHCCCEESCT-TCEEEEECTT
T ss_pred cCCCcc---EEEEcCCcCCHHHHHHHHHHh-CCcEE-EEeccCcceeecccCCCcccccccCCCccCCC-CceEEEECCC
Confidence 456788 666666 256667777777 58999 9999999865432211110 0112333222 2234444432
Q ss_pred CCCcccccccCCCccccccccCCCCeEEEEEcc---cccee--------------ecccCCEEEEeceeCCCCEEEEEee
Q 007815 374 LGNLESQVLCIEPKPVGLTEVKVGEEYEIIVTN---VAGLY--------------RYRLGDVVKVMGFHNSTPELKFICR 436 (588)
Q Consensus 374 ~~~~~~~~~~~~~~~l~~~eve~G~~yELVvTt---~~Gl~--------------RYr~GDvv~v~~~~~~~P~i~f~gR 436 (588)
. ..+++|+.|||+|+. ..||| +|||||+++.+. .+.+.|+||
T Consensus 374 ------------~-----~~~p~G~~GEl~i~G~~v~~GY~~~p~~t~~~f~~~~~yrTGDl~~~~~----dG~l~~~GR 432 (617)
T 3rg2_A 374 ------------G-----NPLPQGEVGRLMTRGPYTFRGYYKSPQHNASAFDANGFYCSGDLISIDP----EGYITVQGR 432 (617)
T ss_dssp ------------S-----CBCCTTCCEEEEEECSSSCSCCTTCHHHHHHHBCTTSCEEEEEEEEECT----TSCEEEEEE
T ss_pred ------------C-----CCCCCCCceEEEecCccccchhcCChhhhhhccCCCCceecCceEEEcC----CceEEEEee
Confidence 1 256789999999976 46776 499999999985 689999999
Q ss_pred cCceeeeeeeecCHHHHHHHHHH
Q 007815 437 RNLLLTINIDKNTEKDLQLSVDE 459 (588)
Q Consensus 437 ~~d~i~~~Gekv~e~~v~~al~~ 459 (588)
.||+++++|++|.+.+||++|.+
T Consensus 433 ~dd~iki~G~ri~~~eIE~~l~~ 455 (617)
T 3rg2_A 433 EKDQINRGGEKIAAEEIENLLLR 455 (617)
T ss_dssp CSSEEEETTEEEEHHHHHHHHTT
T ss_pred cCCEEEECCEEeCHHHHHHHHHh
Confidence 99999999999999999999985
No 33
>3o83_A Peptide arylation enzyme; ligase, adenylation of 2,3-dihydroxybenzoate and transfer to pantetheine cofactor of BASF; HET: IXN; 1.90A {Acinetobacter baumannii} SCOP: e.23.1.0 PDB: 3o82_A* 3o84_A* 3u16_A* 3u17_A*
Probab=99.49 E-value=6.4e-14 Score=155.35 Aligned_cols=133 Identities=15% Similarity=0.160 Sum_probs=74.8
Q ss_pred CCCCceeeEEeecCc---HHHHHHHHHHhCCCCeeccccccCcccceecCCCCCC---CcccceeeccCceEEEEEeCCC
Q 007815 301 FPNAKYLSGIMTGSM---EHYLKKLRHYAGDLPLMSADYGSSEGWIGANVNPSLP---PELATFAVLPNIGYFEFIPQRL 374 (588)
Q Consensus 301 wP~L~~i~~~~~g~~---~~~~~~l~~~~g~~~v~~~~YgaSEg~~~~~~~~~~~---~~~~~~~l~~~~~~~Efip~~~ 374 (588)
.++|+ .+.+||. ....+++++.+ +++++ +.||+||+.+......... ....|..+.+ +.-+++++.+
T Consensus 306 ~~~lr---~i~~gG~~l~~~~~~~~~~~~-~~~~~-~~YG~TE~~~~~~~~~~~~~~~~~~~G~p~~~-~~~~~i~d~~- 378 (544)
T 3o83_A 306 IQSLK---LLQVGGASFPESLARQVPEVL-NCKLQ-QVFGMAEGLVNYTRLDDSDEQIFTTQGRPISS-DDEIKIVDEQ- 378 (544)
T ss_dssp HTTCC---EEEEESSCCCHHHHTHHHHHH-CSEEE-EEEECTTSCEEECCTTSCHHHHHHCCCEESCT-TCEEEEECTT-
T ss_pred CCcce---EEEEcCCCCCHHHHHHHHHHh-CCcEE-eeeccccccceeecCCCchhhccCCCceecCC-CcEEEEECCC-
Confidence 45788 6666662 66667788888 68998 9999999865442211110 0112333222 3345555432
Q ss_pred CCcccccccCCCccccccccCCCCeEEEEEcc---cccee--------------ecccCCEEEEeceeCCCCEEEEEeec
Q 007815 375 GNLESQVLCIEPKPVGLTEVKVGEEYEIIVTN---VAGLY--------------RYRLGDVVKVMGFHNSTPELKFICRR 437 (588)
Q Consensus 375 ~~~~~~~~~~~~~~l~~~eve~G~~yELVvTt---~~Gl~--------------RYr~GDvv~v~~~~~~~P~i~f~gR~ 437 (588)
+ .++++|+.|||+|++ +.||| +|+|||+++++. .+.+.|+||.
T Consensus 379 ---~-------------~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~g~~~TGDlg~~~~----dG~l~~~GR~ 438 (544)
T 3o83_A 379 ---Y-------------REVPEGEIGMLATRGPYTFCGYYQSPEHNSQVFDEDNYYYSGDLVQRTP----DGNLRVVGRI 438 (544)
T ss_dssp ---S-------------CBCCTTCCEEEEEECTTSCSCCTTCHHHHHHHBCTTCCEEEEEEEEECT----TSCEEEEEEE
T ss_pred ---C-------------CCCCCCCeeEEEEecCCcchhhcCChhhhhhhCCCCCCeEcCCEEEEcC----CCCEEEEeec
Confidence 1 256789999999977 46666 599999999985 6899999999
Q ss_pred CceeeeeeeecCHHHHHHHHHHH
Q 007815 438 NLLLTINIDKNTEKDLQLSVDEA 460 (588)
Q Consensus 438 ~d~i~~~Gekv~e~~v~~al~~~ 460 (588)
+|+|+++|++|++.+||++|.+.
T Consensus 439 dd~ik~~G~~v~p~eIE~~l~~~ 461 (544)
T 3o83_A 439 KDQINRGGEKIASEEIEKLILLH 461 (544)
T ss_dssp C----------------------
T ss_pred CCEEEeCCEEECHHHHHHHHHhC
Confidence 99999999999999999999875
No 34
>3tsy_A Fusion protein 4-coumarate--COA ligase 1, resvera synthase; transferase; 3.10A {Arabidospis thaliana}
Probab=99.44 E-value=9.4e-13 Score=155.98 Aligned_cols=134 Identities=13% Similarity=0.119 Sum_probs=77.3
Q ss_pred CCCCceeeEEeecCc---HHHHHHHHHHhCCCCeeccccccCcccceecCC------CC-CCCcccceeeccCceEEEEE
Q 007815 301 FPNAKYLSGIMTGSM---EHYLKKLRHYAGDLPLMSADYGSSEGWIGANVN------PS-LPPELATFAVLPNIGYFEFI 370 (588)
Q Consensus 301 wP~L~~i~~~~~g~~---~~~~~~l~~~~g~~~v~~~~YgaSEg~~~~~~~------~~-~~~~~~~~~l~~~~~~~Efi 370 (588)
.++|+ .+.+||. ....+++++.|++++++ +.||+||+...+... +. ...+..|..+ .+.-++++
T Consensus 343 l~~lr---~~~~gg~~l~~~~~~~~~~~~~~~~l~-~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~G~p~--~~~~~~i~ 416 (979)
T 3tsy_A 343 LSSIR---VVKSGAAPLGKELEDAVNAKFPNAKLG-QGYGMTEAGPVLAMSLGFAKEPFPVKSGACGTVV--RNAEMKIV 416 (979)
T ss_dssp CTTCC---EEEESSCCCCSSHHHHHHHHCTTCEEE-ECEECGGGCSEEEECGGGSSSCCCCCTTCCCEEC--SSCEEEEE
T ss_pred ccceE---EEEEcCCCCCHHHHHHHHHHCCCCeEE-eeechhhhhHHHHhCCCCCCCccccCCCCcCccc--CCcEEEEE
Confidence 46788 7777773 55667788888889999 999999975432111 10 1112223322 23445666
Q ss_pred eCCCCCcccccccCCCccccccccCCCCeEEEEEcc---cccee--------------ecccCCEEEEeceeCCCCEEEE
Q 007815 371 PQRLGNLESQVLCIEPKPVGLTEVKVGEEYEIIVTN---VAGLY--------------RYRLGDVVKVMGFHNSTPELKF 433 (588)
Q Consensus 371 p~~~~~~~~~~~~~~~~~l~~~eve~G~~yELVvTt---~~Gl~--------------RYr~GDvv~v~~~~~~~P~i~f 433 (588)
+++ ++ .+|.+|+.|||+|+. ..||| +|||||+++++. ...+.|
T Consensus 417 d~~-----------~~-----~~~~~g~~GEl~i~g~~v~~GY~~~p~~t~~~f~~~g~~~TGDl~~~~~----dG~l~~ 476 (979)
T 3tsy_A 417 DPD-----------TG-----DSLSRNQPGEICIRGHQIMKGYLNNPAATAETIDKDGWLHTGDIGLIDD----DDELFI 476 (979)
T ss_dssp CTT-----------SC-----CBCCTTCCEEEEEESTTSCSEETTCHHHHHHHBCTTSCEEEEEEEEECT----TSCEEE
T ss_pred eCC-----------CC-----CCCCCCCccEEEEECCCccccccCChhhhhhhccCCCcEEcCCEEEEcC----CceEEE
Confidence 653 12 256789999999976 46776 499999999985 678999
Q ss_pred EeecCceeeeeeeecCHHHHHHHHHHH
Q 007815 434 ICRRNLLLTINIDKNTEKDLQLSVDEA 460 (588)
Q Consensus 434 ~gR~~d~i~~~Gekv~e~~v~~al~~~ 460 (588)
+||.+|+|+++|++|++.+||++|.+.
T Consensus 477 ~GR~dd~ik~~G~~v~~~eIE~~l~~~ 503 (979)
T 3tsy_A 477 VDRLKELIKYKGFQVAPAELEALLIGH 503 (979)
T ss_dssp EEESCC---------------------
T ss_pred ecCCCCEEEECCEEECHHHHHHHHHhC
Confidence 999999999999999999999999864
No 35
>4dg8_A PA1221; ANL superfamily, adenylation domain, peptidyl carrier protei ribosomal peptide synthetase, NRPS, valine adenylation, LIG; HET: AMP; 2.15A {Pseudomonas aeruginosa} PDB: 4dg9_A*
Probab=99.42 E-value=2.4e-12 Score=145.35 Aligned_cols=133 Identities=17% Similarity=0.139 Sum_probs=91.4
Q ss_pred CCCCceeeEEeecCc---HHHHHHHHHHhCCCCeeccccccCcccceec---CCCC---CCCcccceeeccCceEEEEEe
Q 007815 301 FPNAKYLSGIMTGSM---EHYLKKLRHYAGDLPLMSADYGSSEGWIGAN---VNPS---LPPELATFAVLPNIGYFEFIP 371 (588)
Q Consensus 301 wP~L~~i~~~~~g~~---~~~~~~l~~~~g~~~v~~~~YgaSEg~~~~~---~~~~---~~~~~~~~~l~~~~~~~Efip 371 (588)
.++|+ .+++||. ....+++.+.+++++++ +.||+||+.+... .... ......|..+ .+.-+.+++
T Consensus 275 l~~lr---~v~~gGe~l~~~~~~~~~~~~~~~~l~-n~YG~TE~~~~~~~~~~~~~~~~~~~~~iG~p~--~~~~~~i~d 348 (620)
T 4dg8_A 275 LGGLR---QLLTGGDILSVPHVRRALLRHPRLHLV-NGYGPTENTTFTCCHVVTDDDLEEDDIPIGKAI--AGTAVLLLD 348 (620)
T ss_dssp GTTCS---EEEEESSCCCHHHHHHHHHHCTTCEEE-EEECCGGGCSCSEEEECCTGGGGSSSCCCBEEC--TTEEEEEEC
T ss_pred CCCcc---EEEEEeCcCCHHHHHHHHHhCCCeEEE-eeEchhhhhhheEEEeccccccCCCCCCceecc--cCcEEEEEC
Confidence 46788 6677763 34555555566679999 9999999754221 1111 1111133322 233455555
Q ss_pred CCCCCcccccccCCCccccccccCCCCeEEEEEcc---cccee---------------------ecccCCEEEEeceeCC
Q 007815 372 QRLGNLESQVLCIEPKPVGLTEVKVGEEYEIIVTN---VAGLY---------------------RYRLGDVVKVMGFHNS 427 (588)
Q Consensus 372 ~~~~~~~~~~~~~~~~~l~~~eve~G~~yELVvTt---~~Gl~---------------------RYr~GDvv~v~~~~~~ 427 (588)
.+ + .. -+++|+.|||+|.. ..||| +|||||+++.+.
T Consensus 349 ~~----~--------~~----~~~~g~~GEl~i~G~~v~~GY~~~p~~t~~~f~~~p~~~~~~~~yrTGDl~~~~~---- 408 (620)
T 4dg8_A 349 EH----G--------QE----IAEPDRAGEIVAFGAGLAQGYRNDAARTRASFVELPYRGRLLRAYRTGDRARYDE---- 408 (620)
T ss_dssp TT----S--------CB----CCSSSCCEEEEEEETTCCSEETTCHHHHHHHEEEEEETTEEEEEEEEEEEEEECT----
T ss_pred cc----C--------CC----CCCCCCceEEEEeccccccccCCChhhhhhhhccCCCCCCCceEEeCCCEEEECC----
Confidence 43 1 11 14679999999965 35654 499999999985
Q ss_pred CCEEEEEeecCceeeeeeeecCHHHHHHHHHH
Q 007815 428 TPELKFICRRNLLLTINIDKNTEKDLQLSVDE 459 (588)
Q Consensus 428 ~P~i~f~gR~~d~i~~~Gekv~e~~v~~al~~ 459 (588)
.+.+.|+||.||+|+++|++|.+.|||++|.+
T Consensus 409 dG~l~~~GR~dd~Ik~~G~ri~~~eIE~~l~~ 440 (620)
T 4dg8_A 409 QGRLRFIGRGDGQVKLNGYRLDLPALEQRFRR 440 (620)
T ss_dssp TSCEEEEECSSSEEEETTEEEEHHHHHHHHHT
T ss_pred CCeEEEEccCCCEEEECCEEcCHHHHHHHHHh
Confidence 68999999999999999999999999999986
No 36
>4gs5_A Acyl-COA synthetase (AMP-forming)/AMP-acid ligase protein; structural genomics, PSI-biology; 2.02A {Dyadobacter fermentans}
Probab=99.41 E-value=1.9e-12 Score=136.32 Aligned_cols=123 Identities=14% Similarity=0.176 Sum_probs=80.5
Q ss_pred CCCCceeeEEeecCc---HHHHHHHHHHhCCCCeeccccccCcccceecCCCCCCCcccceeeccCceEEEEEeCCCCCc
Q 007815 301 FPNAKYLSGIMTGSM---EHYLKKLRHYAGDLPLMSADYGSSEGWIGANVNPSLPPELATFAVLPNIGYFEFIPQRLGNL 377 (588)
Q Consensus 301 wP~L~~i~~~~~g~~---~~~~~~l~~~~g~~~v~~~~YgaSEg~~~~~~~~~~~~~~~~~~l~~~~~~~Efip~~~~~~ 377 (588)
.++|+ .+.+||. ....+++++ + +++++ +.||+||+...+...+...+. . .... ++..
T Consensus 147 l~~lr---~v~~gG~~l~~~~~~~~~~-~-~~~~~-~~YG~TEt~~~~~~~~~~~~~-~------g~~~---~~~p---- 206 (358)
T 4gs5_A 147 VDRLG---KVLLGGAPVNHALAMQISD-L-AMPVY-QSYGMTETVSHVALKALNGPE-A------SELY---VFLP---- 206 (358)
T ss_dssp GGGGC---SEEECSSCCCHHHHHHHHT-C-SSCEE-EEEECGGGSSEEEEEECSSTT-C------CSCE---EECT----
T ss_pred CCcce---EEEEcccCCCchheecccc-c-CceEE-eccccccccceeecccccccc-c------ceee---ccCC----
Confidence 45678 6667763 444555554 4 58999 999999975543322211110 0 0111 1211
Q ss_pred ccccccCCCccccccccCCCCeEEEEEccc-cceeecccCCEEEEeceeCCCCEEEEEeecCceeeeeeeecCHHHHHHH
Q 007815 378 ESQVLCIEPKPVGLTEVKVGEEYEIIVTNV-AGLYRYRLGDVVKVMGFHNSTPELKFICRRNLLLTINIDKNTEKDLQLS 456 (588)
Q Consensus 378 ~~~~~~~~~~~l~~~eve~G~~yELVvTt~-~Gl~RYr~GDvv~v~~~~~~~P~i~f~gR~~d~i~~~Gekv~e~~v~~a 456 (588)
-.++..++.+||++... ..-.+|+|||+++++. .. +.|+||.||+|+++|+||++.+||++
T Consensus 207 -------------gv~~~~~~~Gel~~~g~~~~~g~~~TGDlg~~d~----~g-~~~~GR~dd~Ik~~G~~v~p~eIE~~ 268 (358)
T 4gs5_A 207 -------------GIQYGVDERGCLHISGAVTNGQTVQTNDLVEIHG----NA-FQWIGRADNVINSGGVKIVLDQIDQR 268 (358)
T ss_dssp -------------TCEEEECTTSEEEEESGGGTTCCEEEEEEEEECS----SE-EEEEEEGGGEEEETTEEEEHHHHHHH
T ss_pred -------------CeEEEecCcCceEEecccccCcceecCCcccccc----Cc-eEEcccccCeEEECCEEECHHHHHHH
Confidence 01344567789998753 2223699999999985 33 78899999999999999999999999
Q ss_pred HHHHH
Q 007815 457 VDEAA 461 (588)
Q Consensus 457 l~~~~ 461 (588)
|....
T Consensus 269 l~~~~ 273 (358)
T 4gs5_A 269 IAAVF 273 (358)
T ss_dssp HHHHH
T ss_pred HHHhc
Confidence 87654
No 37
>2vsq_A Surfactin synthetase subunit 3; ligase, peptidyl carrier protein, ligase phosphoprotein, TER module, phosphopantetheine; 2.60A {Bacillus subtilis}
Probab=99.40 E-value=1.1e-11 Score=151.14 Aligned_cols=131 Identities=17% Similarity=0.228 Sum_probs=91.2
Q ss_pred CCCceeeEEeecCc---HHHHHHHHHHhCCCCeeccccccCcccceecC---CC---CCCCcccceeeccCceEEEEEeC
Q 007815 302 PNAKYLSGIMTGSM---EHYLKKLRHYAGDLPLMSADYGSSEGWIGANV---NP---SLPPELATFAVLPNIGYFEFIPQ 372 (588)
Q Consensus 302 P~L~~i~~~~~g~~---~~~~~~l~~~~g~~~v~~~~YgaSEg~~~~~~---~~---~~~~~~~~~~l~~~~~~~Efip~ 372 (588)
++|+ +++.||- ....+++.+.+++++++ +.||.||+.+.... .. .......|..+ ++. -+.+++.
T Consensus 720 ~~lr---~~~~gGe~l~~~~~~~~~~~~~~~~l~-n~YG~TE~~~~~~~~~~~~~~~~~~~~~iG~p~-~~~-~~~i~d~ 793 (1304)
T 2vsq_A 720 KGLR---CILFGGERASVPHVRKALRIMGPGKLI-NCYGPTEGTVFATAHVVHDLPDSISSLPIGKPI-SNA-SVYILNE 793 (1304)
T ss_dssp HTCS---EEEEESSCCCHHHHHHHHHHHCTTCEE-EEECCGGGSSCSEEEECCCCCSSCSSCCCBEEC-TTE-EEEEECT
T ss_pred CCcc---EEEEecCCCCHHHHHHHHHhCCCCEEE-EeEChhHHhHHheeeeccCccccCCCCCCceee-CCC-EEEEECC
Confidence 5688 6676762 45556677777778899 99999998542211 11 00111123322 332 2333332
Q ss_pred CCCCcccccccCCCccccccccCCCCeEEEEEcc---cccee--------------------ecccCCEEEEeceeCCCC
Q 007815 373 RLGNLESQVLCIEPKPVGLTEVKVGEEYEIIVTN---VAGLY--------------------RYRLGDVVKVMGFHNSTP 429 (588)
Q Consensus 373 ~~~~~~~~~~~~~~~~l~~~eve~G~~yELVvTt---~~Gl~--------------------RYr~GDvv~v~~~~~~~P 429 (588)
+ . ..+++|+.|||+|.. ..||| +|||||+++... .+
T Consensus 794 ~------------~-----~~~p~G~~GEl~i~G~~v~~GY~~~p~~T~~~f~~~p~~~g~~~yrTGDl~~~~~----dG 852 (1304)
T 2vsq_A 794 Q------------S-----QLQPFGAVGELCISGMGVSKGYVNRADLTKEKFIENPFKPGETLYRTGDLARWLP----DG 852 (1304)
T ss_dssp T------------S-----CBCCTTCCEEEEEEETTCCCCBTTCHHHHHHHEEECTTSTTCEEEEEEEEEEECT----TS
T ss_pred C------------c-----CCCCCCCceEEEEeccccCccccCCcccchhhhccCCCCCCCeeEecCCeEEEcC----CC
Confidence 2 1 246789999999976 35554 699999999985 68
Q ss_pred EEEEEeecCceeeeeeeecCHHHHHHHHHH
Q 007815 430 ELKFICRRNLLLTINIDKNTEKDLQLSVDE 459 (588)
Q Consensus 430 ~i~f~gR~~d~i~~~Gekv~e~~v~~al~~ 459 (588)
.++|+||.|++++++|++|...|||++|.+
T Consensus 853 ~l~~~GR~d~qvki~G~rie~~eIE~~l~~ 882 (1304)
T 2vsq_A 853 TIEYAGRIDDQVKIRGHRIELEEIEKQLQE 882 (1304)
T ss_dssp CEEEEEEGGGEEEETTEEEEHHHHHHHHHH
T ss_pred eEEEEcCCCCEEEECCEeeCHHHHHHHHHh
Confidence 999999999999999999999999999986
No 38
>1v25_A Long-chain-fatty-acid-COA synthetase; ligase, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.30A {Thermus thermophilus} SCOP: e.23.1.1 PDB: 1ult_A* 1v26_A*
Probab=99.37 E-value=3.1e-12 Score=141.66 Aligned_cols=130 Identities=13% Similarity=0.130 Sum_probs=86.5
Q ss_pred CCCceeeEEeecCc---HHHHHHHHHHhCCCCeeccccccCcccceecCCCCC-------------CCcccceeeccCce
Q 007815 302 PNAKYLSGIMTGSM---EHYLKKLRHYAGDLPLMSADYGSSEGWIGANVNPSL-------------PPELATFAVLPNIG 365 (588)
Q Consensus 302 P~L~~i~~~~~g~~---~~~~~~l~~~~g~~~v~~~~YgaSEg~~~~~~~~~~-------------~~~~~~~~l~~~~~ 365 (588)
++|+ .+++||. ....+++ +.+ +++++ +.||+||+...+...... .....|..+ + +.
T Consensus 293 ~~lr---~i~~gG~~l~~~~~~~~-~~~-g~~~~-~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~-~-~~ 364 (541)
T 1v25_A 293 KTLR---RLVVGGSAAPRSLIARF-ERM-GVEVR-QGYGLTETSPVVVQNFVKSHLESLSEEEKLTLKAKTGLPI-P-LV 364 (541)
T ss_dssp SSCC---EEEECSSCCCHHHHHHH-HHT-TCEEE-EEEECGGGSSEEEECCCCGGGTTSCHHHHHHHHTSCBEEC-T-TC
T ss_pred hhcc---EEEECCCCCCHHHHHHH-HHh-CCcee-ecccccccccceecccccccccccCccccccccCCCCCcC-C-Cc
Confidence 5788 6677763 5555666 456 68998 999999975432211110 011123332 2 33
Q ss_pred EEEEEeCCCCCcccccccCCCccccccccCC--CCeEEEEEcc---cccee--------------ecccCCEEEEeceeC
Q 007815 366 YFEFIPQRLGNLESQVLCIEPKPVGLTEVKV--GEEYEIIVTN---VAGLY--------------RYRLGDVVKVMGFHN 426 (588)
Q Consensus 366 ~~Efip~~~~~~~~~~~~~~~~~l~~~eve~--G~~yELVvTt---~~Gl~--------------RYr~GDvv~v~~~~~ 426 (588)
-+++++.+ +. ++.. |+.|||+|++ +.||| +|+|||+++++.
T Consensus 365 ~~~i~d~~------------g~-----~~~~~~~~~GEl~v~g~~v~~GY~~~p~~t~~~f~~~g~~~TGDlg~~d~--- 424 (541)
T 1v25_A 365 RLRVADEE------------GR-----PVPKDGKALGEVQLKGPWITGGYYGNEEATRSALTPDGFFRTGDIAVWDE--- 424 (541)
T ss_dssp EEEEECTT------------SC-----BCCSSSCCCEEEEEESTTSBSSCBTCHHHHHTTBCTTSCEEEEEEEEECT---
T ss_pred EEEEECCC------------CC-----CCCCCCCcceEEEEeCcchhccccCChhhhhhhccCCCCeEcCCEEEEcC---
Confidence 45555432 12 2332 3689999976 46777 499999999985
Q ss_pred CCCEEEEEeecCceeeeeeeecCHHHHHHHHHHH
Q 007815 427 STPELKFICRRNLLLTINIDKNTEKDLQLSVDEA 460 (588)
Q Consensus 427 ~~P~i~f~gR~~d~i~~~Gekv~e~~v~~al~~~ 460 (588)
.+.+.|+||.+|+|+++|++|++.+||++|.+.
T Consensus 425 -dG~l~~~GR~~d~ik~~G~~v~p~eIE~~l~~~ 457 (541)
T 1v25_A 425 -EGYVEIKDRLKDLIKSGGEWISSVDLENALMGH 457 (541)
T ss_dssp -TCCEEEEEESSCEEEETTEEEEHHHHHCC----
T ss_pred -CceEEEeecccceeeeCCEEECHHHHHHHHHhC
Confidence 678999999999999999999999999999864
No 39
>3t5a_A Long-chain-fatty-acid--AMP ligase FADD28; acetyl-COA synthetase like fold, AMP-binding; 2.05A {Mycobacterium tuberculosis} PDB: 3e53_A
Probab=98.79 E-value=2.6e-08 Score=107.65 Aligned_cols=109 Identities=20% Similarity=0.208 Sum_probs=68.1
Q ss_pred cCCCCceeeEEeecCc---HHHHHHHHHHhC-----CCCeeccccccCcccceecCC-CCCCC-----------------
Q 007815 300 LFPNAKYLSGIMTGSM---EHYLKKLRHYAG-----DLPLMSADYGSSEGWIGANVN-PSLPP----------------- 353 (588)
Q Consensus 300 lwP~L~~i~~~~~g~~---~~~~~~l~~~~g-----~~~v~~~~YgaSEg~~~~~~~-~~~~~----------------- 353 (588)
-.++|+ .+++||. ....+++.+.++ ++.++ +.||+||+.+.+... +..+.
T Consensus 309 ~l~~lr---~i~~gG~~l~~~~~~~~~~~~~~~~~~~~~~~-~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 384 (480)
T 3t5a_A 309 DLGNIL---TILSGSERVQAATIKRFADRFARFNLQERVIR-PSYWLAEATVYVATSKPGQPPETVDFDTESLSAGHAKP 384 (480)
T ss_dssp CCTTCC---EEEECCTTCCHHHHHHHHHHSGGGTCCGGGEE-EEEEETTTTEEEEECCTTSSCCEEEECHHHHHTTBCCC
T ss_pred chhhhh---eeeecCCcCCHHHHHHHHHHHhhcCCChhhcc-ccccccccceeEeecccCCCcceEEecHHHhccCceee
Confidence 456788 7777773 566677777763 34677 999999986533221 11110
Q ss_pred ---------cccceeeccCceEEEEEeCCCCCcccccccCCCccccccccCCCCeEEEEEcc---cccee----------
Q 007815 354 ---------ELATFAVLPNIGYFEFIPQRLGNLESQVLCIEPKPVGLTEVKVGEEYEIIVTN---VAGLY---------- 411 (588)
Q Consensus 354 ---------~~~~~~l~~~~~~~Efip~~~~~~~~~~~~~~~~~l~~~eve~G~~yELVvTt---~~Gl~---------- 411 (588)
...|..+ + .-+.+++.+ ++ .++++|+.|||+|.+ +.|||
T Consensus 385 ~~~~~~~~~~~~G~p~-~--~~~~ivd~~-----------~g-----~~~~~g~~GEl~v~g~~v~~GY~~~pe~t~~~f 445 (480)
T 3t5a_A 385 CAGGGATSLISYMLPR-S--PIVRIVDSD-----------TC-----IECPDGTVGEIWVHGDNVANGYWQKPDESERTF 445 (480)
T ss_dssp CCSSSCEEEECEECCS-S--SEEEEEETT-----------TT-----EECCTTBCEEEEEESTTSCCCBTTBHHHHHHHH
T ss_pred cCCCCcceeeecCccc-C--CEEEEEcCC-----------CC-----cCCCCCCEEEEEEeCCccccccccCcchhHHHH
Confidence 0011111 1 223444432 11 256789999999966 47776
Q ss_pred ---------------ecccCCEEEEeceeCCCCEEEEEee
Q 007815 412 ---------------RYRLGDVVKVMGFHNSTPELKFICR 436 (588)
Q Consensus 412 ---------------RYr~GDvv~v~~~~~~~P~i~f~gR 436 (588)
+|||||+++++ ...+.|+||
T Consensus 446 ~~~~~~~~~~~~~~~w~~TGDlg~~d-----dG~l~~~GR 480 (480)
T 3t5a_A 446 GGKIVTPSPGTPEGPWLRTGDSGFVT-----DGKMFIIGR 480 (480)
T ss_dssp CBCCSSCCTTCCCCCBEEEEEEEEEE-----TTEEEECC-
T ss_pred hhhhccccCCCCCCCeeeccceeeEE-----CCEEEEeCC
Confidence 79999999884 489999998
No 40
>3lax_A Phenylacetate-coenzyme A ligase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 1.43A {Bacteroides vulgatus}
Probab=97.69 E-value=6.9e-05 Score=64.68 Aligned_cols=90 Identities=9% Similarity=0.104 Sum_probs=56.6
Q ss_pred ecCceeeeeeeecCHHHHHHHHHHHHHHhhhcCCeeEeeEEeecCCCCCceEEEEEEeccC--CCHHHHHHHHHHHHHhc
Q 007815 436 RRNLLLTINIDKNTEKDLQLSVDEAAQLLAEEKQEVVDFTSHVDLSTDPGHYVIFWEVSGE--VNDEVLKECCNCLDRSF 513 (588)
Q Consensus 436 R~~d~i~~~Gekv~e~~v~~al~~~~~~l~~~g~~l~~f~~~~~~~~~~~~y~~~vE~~~~--~~~~~l~~~~~~ld~~L 513 (588)
|+||||+++|.|+++.+||++|.+. .++.- .+.+..+.....-...+++|.... .+...++++++.+.+++
T Consensus 2 rADDmIiv~G~nv~P~eIE~vl~~~------p~v~~-~~vv~v~~~~~~~~~~~~V~~~~~~~~~~~~~~~l~~~i~~~l 74 (109)
T 3lax_A 2 NADDMIILKGVNIFPIQIETILLQF------KELGS-DYLITLETAESNDEMTVEVELSQLFTDDYGRLQALTREITRQL 74 (109)
T ss_dssp GGGSCEEETTEEECHHHHHHHHHTC------TTEEE-EEEEEEEEETTEEEEEEEEEECTTCCCCHHHHHHHHHHHHHHH
T ss_pred CcCEEEEECCEEECHHHHHHHHHhC------CCccc-ceEEEEeccccceeEEEEEEEeeccccccchhhhhHHHHHHHH
Confidence 8999999999999999999998753 23221 233332211111234567777543 34455666666666654
Q ss_pred cChhhHHHhhcCCcCCeEEEEeccchHH
Q 007815 514 VDAGYVSARKVNAIGPLELRVVLKGTFQ 541 (588)
Q Consensus 514 ~n~~Y~~~R~~g~l~p~~v~~v~~gtf~ 541 (588)
+...| + ++.|.+|++|+++
T Consensus 75 -------~~~~g-v-~~~v~~v~~~~lP 93 (109)
T 3lax_A 75 -------KDEIL-V-TPRVKLVPKGALP 93 (109)
T ss_dssp -------HHHHS-S-CCEEEEECTTCSC
T ss_pred -------HHHhC-C-ccceEEEcCCeec
Confidence 11223 3 5589999999987
No 41
>3gxs_A Phenylacetate-coenzyme A ligase; APC62324.1, structural genomics, PSI-2, protein structure initiative; 1.43A {Bacteroides vulgatus atcc 8482} PDB: 3lax_A
Probab=97.52 E-value=0.00016 Score=62.52 Aligned_cols=90 Identities=8% Similarity=0.132 Sum_probs=56.5
Q ss_pred eecCceeeeeeeecCHHHHHHHHHHHHHHhhhcCCeeEeeEEeecCCCCCceEEEEEEeccCC---CHHHHHHHHHHHHH
Q 007815 435 CRRNLLLTINIDKNTEKDLQLSVDEAAQLLAEEKQEVVDFTSHVDLSTDPGHYVIFWEVSGEV---NDEVLKECCNCLDR 511 (588)
Q Consensus 435 gR~~d~i~~~Gekv~e~~v~~al~~~~~~l~~~g~~l~~f~~~~~~~~~~~~y~~~vE~~~~~---~~~~l~~~~~~ld~ 511 (588)
||.+|||+++|.|+++.+||++|.+. + ++. ..|.+..+.....-..++++|+ .+. +....+++.+.+.+
T Consensus 1 GR~~D~Iiv~G~nv~P~eIE~~l~~~-p-----~v~-~~~~v~v~~~~~~e~l~~~ve~-~~~~~~~~~~~~~l~~~i~~ 72 (109)
T 3gxs_A 1 SNADDMIILKGVNIFPIQIETILLQF-K-----ELG-SDYLITLETAESNDEMTVEVEL-SQLFTDDYGRLQALTREITR 72 (109)
T ss_dssp CGGGSCEEETTEEECHHHHHHHHHTC-T-----TEE-EEEEEEEEEETTEEEEEEEEEE-CTTCCCCHHHHHHHHHHHHH
T ss_pred CCccCEEEECCEEECHHHHHHHHHhC-C-----CcC-CcEEEEEEcCCCceEEEEEEEE-cCccccchhHHHHHHHHHHH
Confidence 79999999999999999999999863 2 322 1454433211111245688998 332 12344555555555
Q ss_pred hccChhhHHHhhcCCcCCeEEEEeccchHH
Q 007815 512 SFVDAGYVSARKVNAIGPLELRVVLKGTFQ 541 (588)
Q Consensus 512 ~L~n~~Y~~~R~~g~l~p~~v~~v~~gtf~ 541 (588)
.+ +...| +. +.|.+|++|++.
T Consensus 73 ~l-------~~~~~-~~-~~v~~v~~~~lP 93 (109)
T 3gxs_A 73 QL-------KDEIL-VT-PRVKLVPKGALP 93 (109)
T ss_dssp HH-------HHHHS-SC-CEEEEECTTCSC
T ss_pred HH-------HHhhC-Cc-eEEEEECCCCcc
Confidence 54 11223 43 499999999976
No 42
>2qmx_A Prephenate dehydratase; APC86053, L-Phe inhibition, PDT, CHL tepidum TLS, structural genomics, PSI-2, protein structure initiative; HET: PHE; 2.30A {Chlorobium tepidum tls}
Probab=30.66 E-value=1.8e+02 Score=28.74 Aligned_cols=56 Identities=13% Similarity=0.175 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHHHHhhhcCCeeEeeEEeecCCCCCceEEEEEEeccCCCHHHHHHHHHHHH
Q 007815 450 EKDLQLSVDEAAQLLAEEKQEVVDFTSHVDLSTDPGHYVIFWEVSGEVNDEVLKECCNCLD 510 (588)
Q Consensus 450 e~~v~~al~~~~~~l~~~g~~l~~f~~~~~~~~~~~~y~~~vE~~~~~~~~~l~~~~~~ld 510 (588)
+..+.++|..+. ..|+.+.-.-..+- ...++.|.+|||+.+..+...++...+.|.
T Consensus 211 pGaL~~~L~~Fa----~~gINLtkIESRP~-~~~~~~Y~FfvD~eg~~~d~~v~~aL~~L~ 266 (283)
T 2qmx_A 211 QGSLFRALATFA----LRGIDLTKIESRPS-RKKAFEYLFYADFIGHREDQNVHNALENLR 266 (283)
T ss_dssp TTHHHHHHHHHH----TTTCCEEEEEEEEC-SSSTTEEEEEEEEESCTTSHHHHHHHHHHH
T ss_pred CchHHHHHHHHH----HcCCCeeEEEeeEc-CCCCcceEEEEEEecCCCcHHHHHHHHHHH
Confidence 556777777664 47888776666554 335689999999987655444554444444
No 43
>3onr_A Protein transport protein SECE2; calcium dodecin, calcium binding protein, dodecamer, imuuno antigen, metal binding protein; 1.80A {Mycobacterium tuberculosis}
Probab=29.07 E-value=1.9e+02 Score=22.63 Aligned_cols=47 Identities=23% Similarity=0.203 Sum_probs=33.5
Q ss_pred ecCHHHHHHHHHHHHHHhhh-cCCeeEeeEEeecCCCCCceEEEEEEec
Q 007815 447 KNTEKDLQLSVDEAAQLLAE-EKQEVVDFTSHVDLSTDPGHYVIFWEVS 494 (588)
Q Consensus 447 kv~e~~v~~al~~~~~~l~~-~g~~l~~f~~~~~~~~~~~~y~~~vE~~ 494 (588)
+=.++.+++||.+|...|++ .++++.+..+..+. +.-.||.+-+...
T Consensus 16 ~S~edAi~nAi~~AskTl~ni~~~eV~e~~~~v~d-gkv~~yqv~lKV~ 63 (72)
T 3onr_A 16 TSWEQAAAEAVQRARDSVDDIRVARVIEQDMAVDS-AGKITYRIKLEVS 63 (72)
T ss_dssp SCHHHHHHHHHHHHHHHCSCCCEEEEEEEEEEECT-TCCEEEEEEEEEE
T ss_pred CCHHHHHHHHHHHHHhcccCCeEEEEEEEEEEEeC-CcEEEEEEEEEEE
Confidence 33588999999999988743 36667777776653 3457998766653
No 44
>2cc6_A VNG1446H, dodecin; flavoprotein, flavin, flavin-like ligands; HET: LUM; 1.27A {Halobacterium salinarum} SCOP: d.230.2.1 PDB: 2cc7_A* 2cc8_A* 2cc9_A 2ccb_A* 2ccc_A* 2cif_A* 2cjc_A* 1mog_A* 2vx9_A* 2cie_A* 2vkf_A* 2vkg_A*
Probab=26.37 E-value=2.2e+02 Score=22.06 Aligned_cols=47 Identities=19% Similarity=0.174 Sum_probs=32.6
Q ss_pred ecCHHHHHHHHHHHHHHhhh-cCCeeEeeEEeecCCCCCceEEEEEEec
Q 007815 447 KNTEKDLQLSVDEAAQLLAE-EKQEVVDFTSHVDLSTDPGHYVIFWEVS 494 (588)
Q Consensus 447 kv~e~~v~~al~~~~~~l~~-~g~~l~~f~~~~~~~~~~~~y~~~vE~~ 494 (588)
+=.++.+++||.+|...|++ .++++.+..+..+. +.-.||.+-+...
T Consensus 14 ~S~edAi~nAi~~AskTl~ni~~~eV~e~~~~v~d-gkv~~yqv~lKV~ 61 (68)
T 2cc6_A 14 ESFTAAADDAIDRAEDTLDNVVWAEVVDQGVEIGA-VEERTYQTEVQVA 61 (68)
T ss_dssp SCHHHHHHHHHHHHHHHCSCEEEEEEEEEEEECTT-SSSCEEEEEEEEE
T ss_pred CCHHHHHHHHHHHHHhcccCCeEEEEEEEEEEEeC-CcEEEEEEEEEEE
Confidence 33588999999999987743 35666677766543 3457999776654
No 45
>2m0n_A Putative uncharacterized protein; tuberculosis, structural genomics, seattle structural genomi for infectious disease, ssgcid; NMR {Mycobacterium abscessus}
Probab=23.65 E-value=95 Score=26.51 Aligned_cols=54 Identities=9% Similarity=0.183 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHHHHhccc----CCCCCchHHHHHhhccC--CCCHHHHHHHHHHhcCCCCC
Q 007815 239 TFELVWEELCDDIREGVL----SSRITVPSIRAAMSKIL--KPNPELADLIHKKCSGLSNW 293 (588)
Q Consensus 239 ~l~~~w~~lv~dI~~g~~----~~~~~~~~ir~~l~~~l--~~~p~~A~~L~~~~~~~~g~ 293 (588)
+.++.-.+++..|.+... ...++..+|+..|.+.. -|.|+-.+++++.+... ||
T Consensus 41 LtdeEV~~Va~~L~~~~~~~~~~~~i~~~dI~v~It~VT~e~P~peDI~RV~arLaA~-GW 100 (112)
T 2m0n_A 41 LTEEQVQEVVAKLTDPESSAQIDGVVSKDEIEKFIADVTKDEPTAQDISRVASRLAAG-GW 100 (112)
T ss_dssp CCHHHHHHHHHHHTCTTTHHHHTSCCCTTHHHHHHHHTTTCCCCHHHHHHHHHHHHHC-CT
T ss_pred CCHHHHHHHHHHHHhccCcccCCCCCCHHHHHHHHHHHhccCcCHHHHHHHHHHHHhc-CC
Confidence 377888888888865443 22477778999999988 58888777777766543 55
No 46
>3ol3_A Putative uncharacterized protein; tuberculosis, RV0543C, ortholog, iodide ION S phasing, structural genomics; HET: PG4 PGE; 1.95A {Mycobacterium smegmatis} PDB: 3ol4_A
Probab=21.91 E-value=86 Score=26.57 Aligned_cols=54 Identities=20% Similarity=0.276 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHHHHhcccC-CCCCchHHHHHhhccC--CCCHHHHHHHHHHhcCCCCC
Q 007815 239 TFELVWEELCDDIREGVLS-SRITVPSIRAAMSKIL--KPNPELADLIHKKCSGLSNW 293 (588)
Q Consensus 239 ~l~~~w~~lv~dI~~g~~~-~~~~~~~ir~~l~~~l--~~~p~~A~~L~~~~~~~~g~ 293 (588)
+.+++-.+++..|.+.... ..++...|+..+.++. .|.|+-.+++++.+... ||
T Consensus 44 Ltddev~~Va~~L~~~~~~~~pi~~~dI~~~It~vT~~~P~~eDi~RV~arLaa~-GW 100 (107)
T 3ol3_A 44 LTEDEVVRAAQAILRSTDGQSPVTDDDIRNAVHQIIEKEPTAEEINQVAARLASV-GW 100 (107)
T ss_dssp CCHHHHHHHHHHHHHHCCSSSCBCHHHHHHHHHHHHSSCCCHHHHHHHHHHHHTT-TC
T ss_pred CCHHHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHhcCCcCHHHHHHHHHHHHhc-CC
Confidence 3677888888887665443 2477778998888877 57888888887776653 55
No 47
>2fyx_A Transposase, putative; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 1.90A {Deinococcus radiodurans} SCOP: d.58.57.1 PDB: 2xqc_A 2xm3_A 2xma_A 2xo6_A
Probab=21.55 E-value=2.8e+02 Score=23.88 Aligned_cols=51 Identities=14% Similarity=0.178 Sum_probs=33.8
Q ss_pred CHHHHHHHHHHHHHHhhhcCCeeEeeEEeecCCCCCceEEEEEEeccCCCHHHHHHHHHHHHH
Q 007815 449 TEKDLQLSVDEAAQLLAEEKQEVVDFTSHVDLSTDPGHYVIFWEVSGEVNDEVLKECCNCLDR 511 (588)
Q Consensus 449 ~e~~v~~al~~~~~~l~~~g~~l~~f~~~~~~~~~~~~y~~~vE~~~~~~~~~l~~~~~~ld~ 511 (588)
....+.+++..++. ..++.|.+|++.+| |..++|++.... .+..+...+..
T Consensus 42 ~~~~l~~~l~~~~~---~~~~~i~a~~vmpD------HvHlLv~~~p~~---~ls~~~~~lK~ 92 (143)
T 2fyx_A 42 VADGLKDILRDIAT---QNGLELVALEVMPD------YVHLLLGATPQH---VIPDFVKALKG 92 (143)
T ss_dssp HHHHHHHHHHHHHH---HTTCEEEEEEECSS------EEEEEEEECTTC---CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh---hcCeEEEEEEecCC------eEEEEEecCCCc---cHHHHHHHHHh
Confidence 45567777777666 57999999997644 999999985432 34444444443
No 48
>2kvc_A Putative uncharacterized protein; structural genomics, seattle structural genomi for infectious disease, ssgcid, unknown function; NMR {Mycobacterium tuberculosis}
Probab=21.29 E-value=1e+02 Score=25.91 Aligned_cols=51 Identities=10% Similarity=0.184 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHHHHhcccCCCCCchHHHHHhhccC--CCCHHHHHHHHHHhcCCCCC
Q 007815 239 TFELVWEELCDDIREGVLSSRITVPSIRAAMSKIL--KPNPELADLIHKKCSGLSNW 293 (588)
Q Consensus 239 ~l~~~w~~lv~dI~~g~~~~~~~~~~ir~~l~~~l--~~~p~~A~~L~~~~~~~~g~ 293 (588)
+.+++-.++++.+.... .++..+|+..|.... .|.|+-.+++++.+... ||
T Consensus 39 Ltdeev~~Va~~L~~~~---~i~~~dI~~~I~~vt~~~Ps~eDI~RV~arLaa~-GW 91 (103)
T 2kvc_A 39 LSHDEVKAVANELMRLG---DFDQIDIGVVITHFTDELPSPEDVERVRARLAAQ-GW 91 (103)
T ss_dssp SCHHHHHHHHHHHHHHT---SSCSSCHHHHHHSCCSSCSCHHHHHHHHHHHGGG-CC
T ss_pred CCHHHHHHHHHHHHHcC---CCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHhc-CC
Confidence 46788888888876543 266678999999988 58888888887776653 55
No 49
>2qmw_A PDT, prephenate dehydratase; APC85812, prephenate dehydratase (PDT), staphylococcus aureu aureus MU50, structural genomics, PSI-2; 2.30A {Staphylococcus aureus subsp} SCOP: c.94.1.1 d.58.18.3
Probab=20.64 E-value=3.6e+02 Score=26.33 Aligned_cols=55 Identities=16% Similarity=0.073 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHHHhhhcCCeeEeeEEeecCCCCCceEEEEEEeccCCCHHHHHHHHHHHH
Q 007815 450 EKDLQLSVDEAAQLLAEEKQEVVDFTSHVDLSTDPGHYVIFWEVSGEVNDEVLKECCNCLD 510 (588)
Q Consensus 450 e~~v~~al~~~~~~l~~~g~~l~~f~~~~~~~~~~~~y~~~vE~~~~~~~~~l~~~~~~ld 510 (588)
+..+.++|..+. ..|+.+...-..+- ...++.|.+|||+. ..+....+...+.|.
T Consensus 200 pGaL~~~L~~Fa----~~gINLtkIESRP~-~~~~~~Y~FfiD~e-~~~d~~v~~aL~~L~ 254 (267)
T 2qmw_A 200 PGLLASVLNTFA----LFNINLSWIESRPL-KTQLGMYRFFVQAD-SAITTDIKKVIAILE 254 (267)
T ss_dssp TTHHHHHHHHHH----TTTCCEEEEEEEEC-SSSTTCEEEEEEES-CCSCHHHHHHHHHHH
T ss_pred cChHHHHHHHHH----HcCCCeeEEEEeec-CCCCccEEEEEEEe-cCCcHHHHHHHHHHH
Confidence 556667776654 47888877666554 33568999999997 544444444444444
Done!