Query 007816
Match_columns 588
No_of_seqs 177 out of 2021
Neff 9.3
Searched_HMMs 29240
Date Mon Mar 25 11:12:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007816.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/007816hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4gc0_A D-xylose-proton symport 100.0 1.1E-37 3.9E-42 335.6 18.8 434 24-543 29-481 (491)
2 4aps_A DI-OR tripeptide H+ sym 100.0 4.3E-32 1.5E-36 292.1 33.9 444 4-531 11-478 (491)
3 2xut_A Proton/peptide symporte 100.0 1.2E-31 4E-36 291.2 25.5 486 4-535 10-513 (524)
4 1pw4_A Glycerol-3-phosphate tr 100.0 8.7E-28 3E-32 255.1 24.3 398 6-526 28-435 (451)
5 3o7q_A L-fucose-proton symport 99.9 5.4E-25 1.9E-29 232.7 34.1 351 7-482 27-408 (438)
6 2gfp_A EMRD, multidrug resista 99.9 8.3E-24 2.9E-28 219.1 17.3 167 9-202 3-169 (375)
7 2cfq_A Lactose permease; trans 99.9 9.2E-24 3.2E-28 222.4 10.8 400 1-532 2-407 (417)
8 1pw4_A Glycerol-3-phosphate tr 99.5 1.7E-13 5.9E-18 144.6 17.3 181 2-206 248-432 (451)
9 3o7q_A L-fucose-proton symport 99.3 9.6E-12 3.3E-16 130.7 15.8 172 2-202 254-427 (438)
10 2cfq_A Lactose permease; trans 99.3 4E-12 1.4E-16 133.3 10.7 178 3-206 217-398 (417)
11 4aps_A DI-OR tripeptide H+ sym 99.1 3.2E-10 1.1E-14 121.1 11.6 185 8-210 285-474 (491)
12 4gc0_A D-xylose-proton symport 99.0 9.5E-09 3.3E-13 109.5 18.6 184 6-210 276-465 (491)
13 2gfp_A EMRD, multidrug resista 99.0 1.9E-10 6.4E-15 118.3 3.2 168 3-195 196-364 (375)
14 2xut_A Proton/peptide symporte 98.2 8.6E-06 2.9E-10 87.3 13.7 134 346-523 60-197 (524)
15 2zz9_A Aquaporin-4; water tran 21.0 51 0.0017 31.7 2.8 18 505-522 209-226 (301)
No 1
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=100.00 E-value=1.1e-37 Score=335.59 Aligned_cols=434 Identities=12% Similarity=0.028 Sum_probs=264.0
Q ss_pred HhHHHHHHHchhccC--------CChhhHHHHHHHHHHHHHHHhhhhHHhhhcccchhHHHHHHHHHHHHHHHHHHHhhc
Q 007816 24 ANGISMVLYFKNEMH--------FDLAGASNTLTNFFGSTFLLCLVGGFISDTFLSRFATCLIFGTLEVLALVMLTIQAY 95 (588)
Q Consensus 24 ~v~~~~~~~~~~~l~--------~~~~~~~~i~~~~~~~~~~~~l~~G~l~D~~~GRr~~i~i~~~i~~ig~~l~~~a~~ 95 (588)
++++...++++++++ .++.+.|++++++.+|..+|++++|+++|| +|||++++++.+++.+++++++++..
T Consensus 29 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~G~~iG~~~~G~laDr-~GRk~~l~~~~~l~~i~~i~~a~~~~ 107 (491)
T 4gc0_A 29 AVISGTVESLNTVFVAPQNLSESAANSLLGFCVASALIGCIIGGALGGYCSNR-FGRRDSLKIAAVLFFISGVGSAWPEL 107 (491)
T ss_dssp HGGGGTHHHHHHHHTGGGCCCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHH-TCHHHHHHHHHHHHHHHHHHHHCTTT
T ss_pred HHHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcCHHHHHHHHHHHHHHHHHHHHHhh
Confidence 455556666665553 345677899999999999999999999999 99999999999999999999996431
Q ss_pred cccCCCCCCCCCCcCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCCchhhhhhhhHHHHHHHHHHHHHHHHhh
Q 007816 96 SKNLHPPDCGKSSCLKGAIAAYFYGSLYLYSFGCGGNRGTLPAFGAGQFDENDPKGAKALASYFNFYLLATTVAAVIGVT 175 (588)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~GiG~g~~~~~~~~~iae~~~~~~~~~~~~Rg~~~~~~~~~~~iG~~ig~~ 175 (588)
.......... -..--..++++++++|+++|+|.|+..++.++|++|.+|+++ |++..++.+....+|.++++.
T Consensus 108 ~~~~~~~~~~-~~~~~a~~~~~l~~~R~l~G~g~G~~~~~~~~~i~E~~p~~~------rg~~~~~~~~~~~~g~~~~~~ 180 (491)
T 4gc0_A 108 GFTSINPDNT-VPVYLAGYVPEFVIYRIIGGIGVGLASMLSPMYIAELAPAHI------RGKLVSFNQFAIIFGQLLVYC 180 (491)
T ss_dssp TTSCSSSSSS-CCGGGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCGGG------HHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhcchhH-HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHh------hhhhHHhhhhhhhhhhhhhhh
Confidence 1100000000 000002378899999999999999999999999999999887 999999999999999999988
Q ss_pred hhheecc--------ccchhHHHHHHHHHHHHHHHHHHhhccceeecCCCCChhHHHHHHHHHHHHhcCCCCCCCchhhh
Q 007816 176 GIVYVFT--------EKSWWLGFLVSSVANFIGLIALAAGKCLYRIQQPGESPLVRVAQVLVVAIKNRKLSLPDNPEELY 247 (588)
Q Consensus 176 ~~~~i~~--------~~~w~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~ 247 (588)
++..+.. ...||+.+.+..+..++..+..++ .||+|+|+.
T Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------------------~peSp~~L~ 228 (491)
T 4gc0_A 181 VNYFIARSGDASWLNTDGWRYMFASECIPALLFLMLLYT--------------------------------VPESPRWLM 228 (491)
T ss_dssp HHHHHHTTSCTTTTTTTHHHHHHHTTHHHHHHHHHHGGG--------------------------------SCCCHHHHH
T ss_pred cchhhccccccccccchhhHHHhhhhhhhhhhhhhhhhc--------------------------------CCCChHHHH
Confidence 7655532 235777776666554333332221 567777776
Q ss_pred hhhhhhhcccc-cccCCCcch--hhhhhhccCCCCCCCCCCcccccccchHHHHHHHHHHHHHHHHHHHHHhhhhchhHH
Q 007816 248 EINEKERASTW-ERIPHANQF--RCLDKAAIMPKDSAVAAPWRVCTVTQVEEVKILTRMMPILASTILMNTCLAQLQTFS 324 (588)
Q Consensus 248 ~~~~~~~~~~~-~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 324 (588)
.+++.+++.+. ++....+.. ...+......+. .+ ...+ ......++.........+++........++...
T Consensus 229 ~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (491)
T 4gc0_A 229 SRGKQEQAEGILRKIMGNTLATQAVQEIKHSLDHG-RK-TGGR----LLMFGVGVIVIGVMLSIFQQFVGINVVLYYAPE 302 (491)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HH-HTTH----HHHSCCTHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HcCchhHHHHhHHHhcCCchhHHHHHHHHHHHHhh-hh-hhhH----HHHhcccHHHHHHHHHHHHHHhhhhHHHhcchH
Confidence 66555544432 111100000 000000000000 00 0000 000001222222333333333333333333333
Q ss_pred HHHhhhcCCCCCcccccCCcccchhHHHHHHHHHhhhHhHHhhhhhccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHH
Q 007816 325 ITQGAAMDPHLGSIKVPTSSIPVIPLLFMSILLPLYEFFFVPFARKITGHPSGITQLQRVGIGLVLSAVSMTVAGLVEVI 404 (588)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~rr~~~~~~~~~~~~~~~~G~~l~~~~~~~~~~~~~~ 404 (588)
..+..+.... ..........+..++...+...+.+++|||+. +..+...++++++..+.....
T Consensus 303 ~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~l~dr~Grr~~-----------~~~~~~~~~~~~~~l~~~~~~ 365 (491)
T 4gc0_A 303 VFKTLGASTD------IALLQTIIVGVINLTFTVLAIMTVDKFGRKPL-----------QIIGALGMAIGMFSLGTAFYT 365 (491)
T ss_dssp HHHHSSCCHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHH-----------HHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHhcCCCcc------chhhHHHHHHHHHHHHHHHHHHHHHhhcCcch-----------hccchHHHHHHHHHHHHHHhc
Confidence 3332222111 11111222233333333444444444587764 556777777777666544211
Q ss_pred HhhhccCCCCccchHHHHHHHHHHHHHHHHHHhhhhhhhhhcccCcchhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhcc
Q 007816 405 RRNAFNETPPKQISLFWLSFQYCIFGIADMFTFIGLLEFFYKEAPAGMKTLASSFTYLSLSFGYFLSSAFVDIINAVTKR 484 (588)
Q Consensus 405 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~P~~~rg~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~ 484 (588)
. ......+...+++.......+.+..+.+..|++|++.|++++|+.+..+++++++++.+.|.+.+....
T Consensus 366 ~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~fPt~~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~~~ 435 (491)
T 4gc0_A 366 Q----------APGIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWLANYFVSWTFPMMDKNSWL 435 (491)
T ss_dssp T----------CCHHHHHHHHHHHHHHHHTTTTHHHHHHHHHSSCTTTHHHHHHHHHHHHHHHHHHHHTHHHHHCHHHHH
T ss_pred c----------cchHHHHHHHHHHHHHHHhHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0 122223333333444444556778889999999999999999999999999999999998876442211
Q ss_pred cCCCCCCCccCCCCCCcchHHHHHHHHHHHHHHHHHHHHhhcccccccCCCCCCCCCCC
Q 007816 485 ITPSKQGWLHGKDINKNNVNLFYWFLAIVSVLNLVLYLYAAAWYKYKPENCSDIKPKPL 543 (588)
Q Consensus 485 ~~~~~~~w~~~~~~~~~~~~~~f~~~a~~~~~~~v~~~~~~~e~~~~~le~~~~~~~~~ 543 (588)
. ...+....|++++++++++.++++++.||||||++||+|+.++++
T Consensus 436 ---------~----~~~~~~~~~~i~~~~~~~~~i~~~~~~PETkg~tLeei~~~f~~~ 481 (491)
T 4gc0_A 436 ---------V----AHFHNGFSYWIYGCMGVLAALFMWKFVPETKGKTLEELEALWEPE 481 (491)
T ss_dssp ---------H----HHHTTCHHHHHHHHHHHHHHHHHHHHCCCCTTCCHHHHGGGTC--
T ss_pred ---------H----hhhhhhHHHHHHHHHHHHHHHHHHheecCCCCCCHHHHHHHhCCC
Confidence 0 001223468899999999999999999999999999999998754
No 2
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=100.00 E-value=4.3e-32 Score=292.11 Aligned_cols=444 Identities=17% Similarity=0.239 Sum_probs=299.7
Q ss_pred CcchHHHHHHHHHHHHHHHHHhHHHHHHHchhc-----cCCChhhHHHHHHHHHHHHHHHhhhhHHhhhcccchhHHHHH
Q 007816 4 TTCNFFVYVVFSALENMGFIANGISMVLYFKNE-----MHFDLAGASNTLTNFFGSTFLLCLVGGFISDTFLSRFATCLI 78 (588)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-----l~~~~~~~~~i~~~~~~~~~~~~l~~G~l~D~~~GRr~~i~i 78 (588)
|+|.+|.+++..+++++++|++.+.++.|++++ +|.+..+.+++.+.+.++..++++++|+++||++|||+++.+
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~~~~~ 90 (491)
T 4aps_A 11 QPLGLSTLFMTEMWERFSYYGMRAILLYYMWFLISTGDLHITRATAASIMAIYASMVYLSGTIGGFVADRIIGARPAVFW 90 (491)
T ss_dssp CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHH
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHH
Confidence 678899999999999999999999999999988 999999999999999999999999999999993399999999
Q ss_pred HHHHHHHHHHHHHHhhccccCCCCCCCCCCcCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCCchhhhhhhhH
Q 007816 79 FGTLEVLALVMLTIQAYSKNLHPPDCGKSSCLKGAIAAYFYGSLYLYSFGCGGNRGTLPAFGAGQFDENDPKGAKALASY 158 (588)
Q Consensus 79 ~~~i~~ig~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~GiG~g~~~~~~~~~iae~~~~~~~~~~~~Rg~~ 158 (588)
+.++..++.+++++++ +.+.++++|+++|+|.|...++.+++++|++|+++ | .|+..
T Consensus 91 ~~~~~~~~~~~~~~~~-------------------~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~---~-~r~~~ 147 (491)
T 4aps_A 91 GGVLIMLGHIVLALPF-------------------GASALFGSIILIIIGTGFLKPNVSTLVGTLYDEHD---R-RRDAG 147 (491)
T ss_dssp HHHHHHHHHHHHHSCC-------------------STTHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCT---T-HHHHH
T ss_pred HHHHHHHHHHHHHHhh-------------------hHHHHHHHHHHHHHHHHhccchHHHHHHHHcCccc---c-cceee
Confidence 9999999999999876 44579999999999999999999999999999765 2 27788
Q ss_pred HHHHHHHHHHHHHHHhhhhheeccccchhHHHHHHHHHHHHHHHHHHhhccceeecCC---CC-ChhHHHHHHH------
Q 007816 159 FNFYLLATTVAAVIGVTGIVYVFTEKSWWLGFLVSSVANFIGLIALAAGKCLYRIQQP---GE-SPLVRVAQVL------ 228 (588)
Q Consensus 159 ~~~~~~~~~iG~~ig~~~~~~i~~~~~w~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~---~~-~~~~~~~~~~------ 228 (588)
+++++...++|..++|.+++++.+..+||+.|++.++..+++.+++++..+++...++ +. .+..+..+..
T Consensus 148 ~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 227 (491)
T 4aps_A 148 FSIFVFGINLGAFIAPLIVGAAQEAAGYHVAFSLAAIGMFIGLLVYYFGGKKTLDPHYLRPTDPLAPEEVKPLLVKVSLA 227 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCCSCCSCCCSHHHHHHHHHHCCCC
T ss_pred ehHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhCcccccccccCCCCccccchhHHHHHHHHHH
Confidence 9999999999999999999999988999999999888777666666555444332211 11 0111110000
Q ss_pred --------HHHHHhcCCCCCCCchhhhhhhhhhhcccccccCCCcchhhhhhhccCCCCCCCCCCcccccccchHHHHHH
Q 007816 229 --------VVAIKNRKLSLPDNPEELYEINEKERASTWERIPHANQFRCLDKAAIMPKDSAVAAPWRVCTVTQVEEVKIL 300 (588)
Q Consensus 229 --------~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (588)
.........+. +.+.......... . ...+... . |+... ....++++.
T Consensus 228 l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~--~---------~~~~~~~--~----------~~~~~-~~~~~~~~~ 282 (491)
T 4aps_A 228 VAGFIAIIVVMNLVGWNSL-PAYINLLTIVAIA--I---------PVFYFAW--M----------ISSVK-VTSTEHLRV 282 (491)
T ss_dssp CHHHHHHHHHHHHHSSCCT-THHHHHHHHHHHH--H---------HHHHHHH--H----------C-------------C
T ss_pred HHHHHHHHHHHHhccCccc-ccchhhhhHHHHH--H---------HHHHHHH--H----------hhccc-ccHHHHHHH
Confidence 00001111000 0000000000000 0 0000000 0 00000 001112222
Q ss_pred HHHHHHHHHHHHHHHhhhhchhHHHHHhhh-cCCCCCcccccCCcccchhHHHHHHHHHhhhHhHHhhhhhccCCCCCCC
Q 007816 301 TRMMPILASTILMNTCLAQLQTFSITQGAA-MDPHLGSIKVPTSSIPVIPLLFMSILLPLYEFFFVPFARKITGHPSGIT 379 (588)
Q Consensus 301 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~rr~~~~~~~~~ 379 (588)
.....+......++..+.+..+.+..+... ...+ ....+.......+..++..++.+++.++++||+. .
T Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~r~~------~ 352 (491)
T 4aps_A 283 VSYIPLFIAAVLFWAIEEQGSVVLATFAAERVDSS----WFPVSWFQSLNPLFIMLYTPFFAWLWTAWKKNQP------S 352 (491)
T ss_dssp TTHHHHHHHHHHHHHHHGGGGTHHHHHHHHSCCCS----SSCSGGGTTHHHHHHHHHHHHHHHHHHHTTTC---------
T ss_pred HHHHHHHHHHHHHHHHHhhccHHHHHHHHHHhccC----ccCHHHHhccchHHHHHHHHHHHHHHHHHhccCC------C
Confidence 233334444444455544444433322222 1111 1345666677788888888888888777777642 4
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCccchHHHHHHHHHHHHHHHHHHhhhhhhhhhcccCcchhhHHHHH
Q 007816 380 QLQRVGIGLVLSAVSMTVAGLVEVIRRNAFNETPPKQISLFWLSFQYCIFGIADMFTFIGLLEFFYKEAPAGMKTLASSF 459 (588)
Q Consensus 380 ~~~~~~~G~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~P~~~rg~~~~~ 459 (588)
....+.+|.++++++++++....... ......+.+++.+.+++.+++.....+..++++.|.+|++.||+++|+
T Consensus 353 ~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~ 426 (491)
T 4aps_A 353 SPTKFAVGLMFAGLSFLLMAIPGALY------GTSGKVSPLWLVGSWALVILGEMLISPVGLSVTTKLAPKAFNSQMMSM 426 (491)
T ss_dssp CHHHHHHHHHHHHHHHTTTHHHHHHC------CCCTTCCTHHHHHHHHHHHHHHHTTTTHHHHHHHHHTTTTCSSSSTHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHhc------CCCCCccHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHHHHHHHHH
Confidence 45667788888888887776543211 001234566777888889999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhcccCCCCCCCccCCCCCCcchHHHHHHHHHHHHHHHHHHHHhhcccccc
Q 007816 460 TYLSLSFGYFLSSAFVDIINAVTKRITPSKQGWLHGKDINKNNVNLFYWFLAIVSVLNLVLYLYAAAWYKYK 531 (588)
Q Consensus 460 ~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~f~~~a~~~~~~~v~~~~~~~e~~~~ 531 (588)
.++...+++.+++.+.+.+.+ .++...|+++++++++..++++++.++++++
T Consensus 427 ~~~~~~~g~~i~~~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 478 (491)
T 4aps_A 427 WFLSSSVGSALNAQLVTLYNA--------------------KSEVAYFSYFGLGSVVLGIVLVFLSKRIQGL 478 (491)
T ss_dssp HHHHHHHHHHHHHHHGGGGGG--------------------SSTTHHHHHTHHHHHHHHHHHHHC-------
T ss_pred HHHHHHHHHHHHHHHHHHHhc--------------------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999888776533 1234568888888888888888777766554
No 3
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=100.00 E-value=1.2e-31 Score=291.24 Aligned_cols=486 Identities=17% Similarity=0.255 Sum_probs=288.9
Q ss_pred CcchHHHHHHHHHHHHHHHHHhHHHHHHHchhccC------CChhhHHHHHHHHHHHHHHHhhhhHHhhhccc-chhHHH
Q 007816 4 TTCNFFVYVVFSALENMGFIANGISMVLYFKNEMH------FDLAGASNTLTNFFGSTFLLCLVGGFISDTFL-SRFATC 76 (588)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~------~~~~~~~~i~~~~~~~~~~~~l~~G~l~D~~~-GRr~~i 76 (588)
++|.+|.+++.+++.++++|++.+.++.|+++++| ++..+.+++.+.+.++..++.+++|+++|| + |||+++
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr-~~g~r~~~ 88 (524)
T 2xut_A 10 WPRQIPYIIASEACERFSFYGMRNILTPFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADR-FFGKYNTI 88 (524)
T ss_dssp ---CCTHHHHHHHHHHHHHHHHHHHHHHHHHHSCSSCCSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHTT-SSCSHHHH
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhcchHHH
Confidence 57889999999999999999999999999999999 999999999999999999999999999999 8 999999
Q ss_pred HHHHHHHHHHHHHHHHhhccccCCCCCCCCCCcCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCCchhhhhhh
Q 007816 77 LIFGTLEVLALVMLTIQAYSKNLHPPDCGKSSCLKGAIAAYFYGSLYLYSFGCGGNRGTLPAFGAGQFDENDPKGAKALA 156 (588)
Q Consensus 77 ~i~~~i~~ig~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~GiG~g~~~~~~~~~iae~~~~~~~~~~~~Rg 156 (588)
.++.++..++.+++++++ .+.+.++++|+++|+|.|...+..+++++|.+|+++ |..+.
T Consensus 89 ~~~~~~~~~~~~~~~~~~------------------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~---r~~~~ 147 (524)
T 2xut_A 89 LWLSLIYCVGHAFLAIFE------------------HSVQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQSN---KSLAQ 147 (524)
T ss_dssp HHHHHHHHHHHHHHHHTS------------------SCHHHHHHHHHHHHHHHHTTHHHHHHHHHHTCSTTT---TTHHH
T ss_pred HHHHHHHHHHHHHHHHhc------------------ccHHHHHHHHHHHHHhccccchhHHHHHHHHcCccc---hHHHH
Confidence 999999999999998875 145679999999999999999999999999999877 22224
Q ss_pred hHHHHHHHHHHHHHHHHhhhhheeccccchhHHHHHHHHHHHHHHHHHHhhccceeecCCCCChhHHHHHHHHHHHHhcC
Q 007816 157 SYFNFYLLATTVAAVIGVTGIVYVFTEKSWWLGFLVSSVANFIGLIALAAGKCLYRIQQPGESPLVRVAQVLVVAIKNRK 236 (588)
Q Consensus 157 ~~~~~~~~~~~iG~~ig~~~~~~i~~~~~w~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (588)
..+++++...++|..++|.+++++.+..+||+.|++.+++.++..++++...++....++++++..+..+.++...++++
T Consensus 148 ~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (524)
T 2xut_A 148 KAFDMFYFTINFGSFFASLSMPLLLKNFGAAVAFGIPGVLMFVATVFFWLGRKRYIHMPPEPKDPHGFLPVIRSALLTKV 227 (524)
T ss_dssp HHHHHHHHHHHHHHHHHHHTSTHHHHTSCHHHHHHHHHHHHHHHHHHHHSSSSSCCCCC--------------------C
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHhcccccccCCCCccchhHHHHHHHHHhhhh
Confidence 45666999999999999999999988889999999988887766666655555443333322221111111111122211
Q ss_pred CCCCCCchhhhhhhhhhhcccccccCCCcchhhhhhhc----cCCCCCCCCCCcc-------cccccchHHHHHHHHHHH
Q 007816 237 LSLPDNPEELYEINEKERASTWERIPHANQFRCLDKAA----IMPKDSAVAAPWR-------VCTVTQVEEVKILTRMMP 305 (588)
Q Consensus 237 ~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~ 305 (588)
.+ ++....+.+........ ....+.+......... ...+. ..+.+|+ .+.+...+++++.+....
T Consensus 228 ~~-~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (524)
T 2xut_A 228 EG-KGNIGLVLALIGGVSAA--YALVNIPTLGIVAGLCCAMVLVMGF-VGAGASLQLERARKSHPDAAVDGVRSVLRILV 303 (524)
T ss_dssp TT-HHHHHHHHHHHHHHHHH--HTGGGTTTTCSSHHHHHHHHHHHHH-HHTGGGTHHHHSCCSCCSSSSTTTTTHHHHHH
T ss_pred cc-cCccchhhhhhhhhhhh--hhhcccchhhhhhhhhhhhhhhhcc-cccchhhHHhhhhccccHhHHHHHHHHHHHHH
Confidence 10 00000000000000000 0000000000000000 00000 0000110 000011122233333333
Q ss_pred HHHHHHHHHHhhhhchhHHHHHhhhcCCCCCcccccCCcccchhHHHHHHHHHhhhHhHHhhhhhccCCCCCCCchHHHH
Q 007816 306 ILASTILMNTCLAQLQTFSITQGAAMDPHLGSIKVPTSSIPVIPLLFMSILLPLYEFFFVPFARKITGHPSGITQLQRVG 385 (588)
Q Consensus 306 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~rr~~~~~~~~~~~~~~~ 385 (588)
+......++..+.+..+.+..+...++... + ...+.....+.+..++..++.+++..+..+|+.. +.++...+.
T Consensus 304 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~ 377 (524)
T 2xut_A 304 LFALVTPFWSLFDQKASTWILQANDMVKPQ--W-FEPAMMQALNPLLVMLLIPFNNFVLYPAIERMGV---KLTALRKMG 377 (524)
T ss_dssp HHTTSHHHHTTTSSTTTHHHHHHHHSCCCS--S-SCHHHHHTTSGGGHHHHGGGTTTC---------------CCHHHHH
T ss_pred HHHHHHHHHHHHhccchhhHHhHHhcCCCe--e-ecHHHHHHHHHHHHHHhHHHHHhhhHHHHHhcCC---CCChHHHHH
Confidence 433344444555555555555444443221 0 1233444555666777778888775444444321 124455677
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhccCCCCccchHHHHHHHHHHHHHHHHHHhhhhhhhhhcccCcchhhHHHHHHHHHHH
Q 007816 386 IGLVLSAVSMTVAGLVEVIRRNAFNETPPKQISLFWLSFQYCIFGIADMFTFIGLLEFFYKEAPAGMKTLASSFTYLSLS 465 (588)
Q Consensus 386 ~G~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~P~~~rg~~~~~~~~~~~ 465 (588)
+|+++++++++++...... .+.....+.+++++.+++.++++....+..++++.|.+|++.||+++|+.++...
T Consensus 378 ~g~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~ 451 (524)
T 2xut_A 378 AGIAITGLSWIVVGTIQLM------MDGGSALSIFWQILPYALLTFGEVLVSATGLEFAYSQAPKAMKGTIMSFWTLSVT 451 (524)
T ss_dssp THHHHHHHHHHTTTTTTTT------TTTTCCCCSHHHHHHHHHHHHHHHHHHHHHTTTHHHHCCTTCCTTTHHHHGGGHH
T ss_pred HHHHHHHHHHHHHHHHHHH------hcCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHhHHHHHHHHHHH
Confidence 7888877777665433100 0000124566777888999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhhhcccCCCCCCCccCCCCCCcchHHHHHHHHHHHHHHHHHHHHhhcccccccCCC
Q 007816 466 FGYFLSSAFVDIINAVTKRITPSKQGWLHGKDINKNNVNLFYWFLAIVSVLNLVLYLYAAAWYKYKPENC 535 (588)
Q Consensus 466 l~~~i~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~f~~~a~~~~~~~v~~~~~~~e~~~~~le~ 535 (588)
+++.+++.+.+.+.+.+.. +|..+. +.+...+.|++++++++++.++++++.++++.++.++
T Consensus 452 ~g~~~g~~~~g~~~~~~~~------~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 513 (524)
T 2xut_A 452 VGNLWVLLANVSVKSPTVT------EQIVQT--GMSVTAFQMFFFAGFAILAAIVFALYARSYQMQDHYR 513 (524)
T ss_dssp HHHHHHHHHHHHTTSCHHH------HHHHHH--HSCHHHHHHHHHHHHHHHHHHHHC-------------
T ss_pred HHHHHHHHHHHHhcccccc------cccccc--cccccccHHHHHHHHHHHHHHHHHHHHHHhccchhhh
Confidence 9999999998876432110 122100 0001122378888888888888888778777655443
No 4
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=99.96 E-value=8.7e-28 Score=255.08 Aligned_cols=398 Identities=10% Similarity=-0.039 Sum_probs=252.1
Q ss_pred chHHHHHHHHHHHHHHHHHhHHHHHHHchhccCCChhhHHHHHHHHHHHHHHHhhhhHHhhhcccchhHHHHHHHHHHHH
Q 007816 6 CNFFVYVVFSALENMGFIANGISMVLYFKNEMHFDLAGASNTLTNFFGSTFLLCLVGGFISDTFLSRFATCLIFGTLEVL 85 (588)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~l~~G~l~D~~~GRr~~i~i~~~i~~i 85 (588)
+.++.+++..++..+..+.+.. ..+++.+++ .+..+.+++.+++.++..++.+++|+++|| +|||+++.++.++..+
T Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr-~g~r~~l~~~~~~~~~ 104 (451)
T 1pw4_A 28 QIFLGIFFGYAAYYLVRKNFAL-AMPYLVEQG-FSRGDLGFALSGISIAYGFSKFIMGSVSDR-SNPRVFLPAGLILAAA 104 (451)
T ss_dssp HHHHHHHHHHHHHHHHHTSHHH-HHHHTTSST-TCSSCHHHHHHHHHHHHHHHHHHHHHHHHH-SCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHh-ccHhHHHHHHHHHHHHHHHHHHhHHHHHHh-cCchHHHHHHHHHHHH
Confidence 3455556666666555554444 455666677 999999999999999999999999999999 8999999999999999
Q ss_pred HHHHHHH----hhccccCCCCCCCCCCcCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCCchhhhhhhhHHHH
Q 007816 86 ALVMLTI----QAYSKNLHPPDCGKSSCLKGAIAAYFYGSLYLYSFGCGGNRGTLPAFGAGQFDENDPKGAKALASYFNF 161 (588)
Q Consensus 86 g~~l~~~----a~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~GiG~g~~~~~~~~~iae~~~~~~~~~~~~Rg~~~~~ 161 (588)
+.+++++ ++ +++.++++|+++|+|.|...++..++++|.+|+++ |++++++
T Consensus 105 ~~~~~~~~~~~~~-------------------~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~------r~~~~~~ 159 (451)
T 1pw4_A 105 VMLFMGFVPWATS-------------------SIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKE------RGGIVSV 159 (451)
T ss_dssp HHHHHHHCHHHHS-------------------SSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTH------HHHHHHH
T ss_pred HHHHHHhhhhccc-------------------cHHHHHHHHHHHHHHhhhccchHHHHHHHHCCchh------hhHHHHH
Confidence 9999998 76 34579999999999999999999999999999877 9999999
Q ss_pred HHHHHHHHHHHHhhhhheeccccc-hhHHHHHHHHHHHHHHHHHHhhccceeecCCCCChhHHHHHHHHHHHHhcCCCCC
Q 007816 162 YLLATTVAAVIGVTGIVYVFTEKS-WWLGFLVSSVANFIGLIALAAGKCLYRIQQPGESPLVRVAQVLVVAIKNRKLSLP 240 (588)
Q Consensus 162 ~~~~~~iG~~ig~~~~~~i~~~~~-w~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 240 (588)
.+...++|.+++|.+++++.+..+ ||+.|++.+++.++..++.+...|+.+......+. .+..
T Consensus 160 ~~~~~~~g~~~g~~~~~~l~~~~g~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~ 223 (451)
T 1pw4_A 160 WNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPI----------------EEYK 223 (451)
T ss_dssp HHHHHHHHHTSHHHHHHHHHHHTCCSTTCTHHHHHHHHHHHHHHHHHCCCSSTTTCCCSC----------------TTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhhccCCHhhcCCCCh----------------hhhc
Confidence 999999999999999998878888 99999998887666655554444432111100000 0000
Q ss_pred CCchhhhhhhhhhhcccccccCCCcchhhhhhhccCCCCCCCCCCcccc-cccchHHHHHHHHHHHHHHHHHHHHHhhhh
Q 007816 241 DNPEELYEINEKERASTWERIPHANQFRCLDKAAIMPKDSAVAAPWRVC-TVTQVEEVKILTRMMPILASTILMNTCLAQ 319 (588)
Q Consensus 241 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 319 (588)
+ . .+ + +. + +.+.++..++.. .....+ .+.++......+...........
T Consensus 224 ~-~---~~----~-----------------~~-~---~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 273 (451)
T 1pw4_A 224 N-D---YP----D-----------------DY-N---EKAEQELTAKQIFMQYVLP-NKLLWYIAIANVFVYLLRYGILD 273 (451)
T ss_dssp C-C-----------------------------------------CCTHHHHHHTSS-CHHHHHHHHHHHHHHHHHHHHHH
T ss_pred c-c---cc----c-----------------cc-h---hhhhcccccccchHHHHHc-CHHHHHHHHHHHHHHHHHHHHHH
Confidence 0 0 00 0 00 0 000000001000 000000 11222111111111111111111
Q ss_pred chhHHHHHhhhcCCCCCcccccCCcccchhHHHHHHHHHhhhHhHHhh--hhhccCCCCCCCchHHHHHHHHHHH-HHHH
Q 007816 320 LQTFSITQGAAMDPHLGSIKVPTSSIPVIPLLFMSILLPLYEFFFVPF--ARKITGHPSGITQLQRVGIGLVLSA-VSMT 396 (588)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~--~rr~~~~~~~~~~~~~~~~G~~l~~-~~~~ 396 (588)
+.+.+..+..+.+ ....+.......++.+++.++..++.+++ +||+ .+.++.++.. ++++
T Consensus 274 ~~~~~~~~~~g~~------~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~-----------~~~~~~~~~~~~~~~ 336 (451)
T 1pw4_A 274 WSPTYLKEVKHFA------LDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRG-----------ATGVFFMTLVTIATI 336 (451)
T ss_dssp HHHHHBTTBSCCC------HHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHH-----------HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCC------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCch-----------hHHHHHHHHHHHHHH
Confidence 1111111111111 11223344445566666667777775555 4443 1334444333 3333
Q ss_pred HHHHHHHHHhhhccCCCCccchHHHHHHHHHHHHHHHHHHhhhhhhhhhcccCcchhhHHHHHHHHHHHH-HHHHHHHHH
Q 007816 397 VAGLVEVIRRNAFNETPPKQISLFWLSFQYCIFGIADMFTFIGLLEFFYKEAPAGMKTLASSFTYLSLSF-GYFLSSAFV 475 (588)
Q Consensus 397 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~P~~~rg~~~~~~~~~~~l-~~~i~~~~~ 475 (588)
++... ...+.+.+....++.+++.....+..+.+..|.+|++.|++++|+.+....+ ++.+++.+.
T Consensus 337 ~~~~~-------------~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~ 403 (451)
T 1pw4_A 337 VYWMN-------------PAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIV 403 (451)
T ss_dssp HTTSC-------------CTTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHh-------------cccCHHHHHHHHHHHHHHHhchHHHHHHHHHHHhchhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 32211 0124445556666777777778888889999999999999999999999999 999999998
Q ss_pred HHhhhhhcccCCCCCCCccCCCCCCcchHHHHHHHHHHHHHHHHHHHHhhc
Q 007816 476 DIINAVTKRITPSKQGWLHGKDINKNNVNLFYWFLAIVSVLNLVLYLYAAA 526 (588)
Q Consensus 476 ~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~f~~~a~~~~~~~v~~~~~~~ 526 (588)
+.+.+.. ++...|++.+++++++.++.++..+
T Consensus 404 g~l~~~~-------------------g~~~~~~~~~~~~~~~~~~~~~~~~ 435 (451)
T 1pw4_A 404 GYTVDFF-------------------GWDGGFMVMIGGSILAVILLIVVMI 435 (451)
T ss_dssp HHHHHSS-------------------CSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhc-------------------CcHHHHHHHHHHHHHHHHHHHHHHh
Confidence 8775411 2456688888888888777665543
No 5
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=99.95 E-value=5.4e-25 Score=232.70 Aligned_cols=351 Identities=10% Similarity=0.009 Sum_probs=228.6
Q ss_pred hHHHHHHHHHHHHHHHHHhHHHHHHHchhccCCChhhHHHHHHHHHHHHHHHhhhhHHhhhcccchhHHHHHHHHHHHHH
Q 007816 7 NFFVYVVFSALENMGFIANGISMVLYFKNEMHFDLAGASNTLTNFFGSTFLLCLVGGFISDTFLSRFATCLIFGTLEVLA 86 (588)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~l~~G~l~D~~~GRr~~i~i~~~i~~ig 86 (588)
.++.+++..++..+... +.+.+.+++.+++|.+..+.+++.+.+.++..++.+++|+++|| +|||+++.++.++..++
T Consensus 27 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr-~g~r~~l~~~~~~~~~~ 104 (438)
T 3o7q_A 27 PFALLCSLFFLWAVANN-LNDILLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKK-LSYKAGIITGLFLYALG 104 (438)
T ss_dssp HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHH-SCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH-hHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHH-hcchHHHHHHHHHHHHH
Confidence 34445555555555554 55566677899999999999999999999999999999999999 99999999999999999
Q ss_pred HHHH---HHhhccccCCCCCCCCCCcCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCCchhhhhhhhHHHHHH
Q 007816 87 LVML---TIQAYSKNLHPPDCGKSSCLKGAIAAYFYGSLYLYSFGCGGNRGTLPAFGAGQFDENDPKGAKALASYFNFYL 163 (588)
Q Consensus 87 ~~l~---~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~GiG~g~~~~~~~~~iae~~~~~~~~~~~~Rg~~~~~~~ 163 (588)
.+++ +.++ +++.++++|+++|+|.|...+...++++|.+|+++ |++.+++.+
T Consensus 105 ~~~~~~~~~~~-------------------~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~------r~~~~~~~~ 159 (438)
T 3o7q_A 105 AALFWPAAEIM-------------------NYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESS------GHFRLNLAQ 159 (438)
T ss_dssp HHHHHHHHHTT-------------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTT------HHHHHHHHH
T ss_pred HHHHHhccccc-------------------cHHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCchh------HHHHHHHHH
Confidence 9999 5554 67789999999999999999999999999999888 999999999
Q ss_pred HHHHHHHHHHhhhhheec-cccc-------------------------hhHHHHHHHHHHHHHHHHHHhhccceeecCCC
Q 007816 164 LATTVAAVIGVTGIVYVF-TEKS-------------------------WWLGFLVSSVANFIGLIALAAGKCLYRIQQPG 217 (588)
Q Consensus 164 ~~~~iG~~ig~~~~~~i~-~~~~-------------------------w~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (588)
...++|..+++.+++++. +..+ ||+.|++.++..++..++++.... ++++++
T Consensus 160 ~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~--p~~~~~ 237 (438)
T 3o7q_A 160 TFNSFGAIIAVVFGQSLILSNVPHQSQDVLDKMSPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIMLTKF--PALQSD 237 (438)
T ss_dssp HHHHHHHHHHHHHTTHHHHTSSCCCCHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC--CCCTTT
T ss_pred HHHHHHHHHHHHHHHHHHhcccccccccccccCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHcC--Cccccc
Confidence 999999999999999887 5544 999998777665544444333211 110000
Q ss_pred CChhHHHHHHHHHHHHhcCCCCCCCchhhhhhhhhhhcccccccCCCcchhhhhhhccCCCCCCCCCCccc-ccccchHH
Q 007816 218 ESPLVRVAQVLVVAIKNRKLSLPDNPEELYEINEKERASTWERIPHANQFRCLDKAAIMPKDSAVAAPWRV-CTVTQVEE 296 (588)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 296 (588)
.+ . ..+ ..+ .. ..++. +++
T Consensus 238 ~~-----------------~-~~~---------------------~~~---~~-------------~~~~~~~~~----- 257 (438)
T 3o7q_A 238 NH-----------------S-DAK---------------------QGS---FS-------------ASLSRLARI----- 257 (438)
T ss_dssp CC-----------------C-CSS---------------------TTS---HH-------------HHHHHHTTC-----
T ss_pred cc-----------------c-ccc---------------------ccc---hh-------------hhHHHHHhC-----
Confidence 00 0 000 000 00 00000 000
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhchhHH-HHHhhhcCCCCCcccccCCcccchhHHHHHHHHHhhhHhHHhhhhhccCCC
Q 007816 297 VKILTRMMPILASTILMNTCLAQLQTFS-ITQGAAMDPHLGSIKVPTSSIPVIPLLFMSILLPLYEFFFVPFARKITGHP 375 (588)
Q Consensus 297 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~rr~~~~~ 375 (588)
++....................+...+ ..+..+.+. ...+.......++.+++.++..++.++++||+.
T Consensus 258 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~------~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~--- 327 (438)
T 3o7q_A 258 -RHWRWAVLAQFCYVGAQTACWSYLIRYAVEEIPGMTA------GFAANYLTGTMVCFFIGRFTGTWLISRFAPHKV--- 327 (438)
T ss_dssp -SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCH------HHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHH---
T ss_pred -hHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCcch------hHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHH---
Confidence 111111111111111111111222222 222222221 112223333445555555666666555566542
Q ss_pred CCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCccchHHHHHHHHHHHHHHHHHHhhhhhhhhhcccCcchhhH
Q 007816 376 SGITQLQRVGIGLVLSAVSMTVAGLVEVIRRNAFNETPPKQISLFWLSFQYCIFGIADMFTFIGLLEFFYKEAPAGMKTL 455 (588)
Q Consensus 376 ~~~~~~~~~~~G~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~P~~~rg~ 455 (588)
+.++.+++++++++.... .+. +....+++.+++.....+..+.+..|.+|++ ++.
T Consensus 328 --------~~~~~~~~~~~~~~~~~~---------------~~~-~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~ 382 (438)
T 3o7q_A 328 --------LAAYALIAMALCLISAFA---------------GGH-VGLIALTLCSAFMSIQYPTIFSLGIKNLGQD-TKY 382 (438)
T ss_dssp --------HHHHHHHHHHHHHHHHHC---------------CHH-HHHHHHHHHHHHHTTHHHHHHHHHHSSCGGG-HHH
T ss_pred --------HHHHHHHHHHHHHHHHHc---------------CCc-HHHHHHHHHHHHHHHHHHHHHHHHHhhcccc-ccc
Confidence 555666666655544332 111 2233446667777788899999999999987 899
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 007816 456 ASSFTYLSLSFGYFLSSAFVDIINAVT 482 (588)
Q Consensus 456 ~~~~~~~~~~l~~~i~~~~~~~~~~~~ 482 (588)
++++.. .+.+++.+++.+.+.+.+..
T Consensus 383 ~~~~~~-~~~~g~~~~~~~~g~l~~~~ 408 (438)
T 3o7q_A 383 GSSFIV-MTIIGGGIVTPVMGFVSDAA 408 (438)
T ss_dssp HHHHHH-HTTHHHHHHHHHHHHHHHHH
T ss_pred hhhHHH-HHHHHHHHHHHHHHHHHHHh
Confidence 999887 67799999999888876543
No 6
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=99.91 E-value=8.3e-24 Score=219.09 Aligned_cols=167 Identities=12% Similarity=0.075 Sum_probs=148.4
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHchhccCCChhhHHHHHHHHHHHHHHHhhhhHHhhhcccchhHHHHHHHHHHHHHHH
Q 007816 9 FVYVVFSALENMGFIANGISMVLYFKNEMHFDLAGASNTLTNFFGSTFLLCLVGGFISDTFLSRFATCLIFGTLEVLALV 88 (588)
Q Consensus 9 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~l~~G~l~D~~~GRr~~i~i~~~i~~ig~~ 88 (588)
+.+++..++..++.....+.+ +.+.+++|.++.+.+++.+.+.++..++.++.|+++|| +|||+++.++..+..++.+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr-~g~r~~~~~~~~~~~~~~~ 80 (375)
T 2gfp_A 3 LMLVLLVAVGQMAQTIYIPAI-ADMARDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDR-VGRRPVILVGMSIFMLATL 80 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH-HHHHTTSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTT-SCCCCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhh-HHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCCchhHHHHHHHHHHHHH
Confidence 456667777766666555544 45678899999999999999999999999999999999 8999999999999999999
Q ss_pred HHHHhhccccCCCCCCCCCCcCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCCchhhhhhhhHHHHHHHHHHH
Q 007816 89 MLTIQAYSKNLHPPDCGKSSCLKGAIAAYFYGSLYLYSFGCGGNRGTLPAFGAGQFDENDPKGAKALASYFNFYLLATTV 168 (588)
Q Consensus 89 l~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~GiG~g~~~~~~~~~iae~~~~~~~~~~~~Rg~~~~~~~~~~~i 168 (588)
+.++++ +.+.++++|+++|++.+...+...++++|.+|+++ |++.+++.+...++
T Consensus 81 ~~~~~~-------------------~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~ 135 (375)
T 2gfp_A 81 VAVTTS-------------------SLTVLIAASAMQGMGTGVGGVMARTLPRDLYERTQ------LRHANSLLNMGILV 135 (375)
T ss_dssp HHHHHH-------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSS------CCSHHHHHHHHHHH
T ss_pred HHHHhc-------------------cHHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHH------HHHHHHHHHHHHHH
Confidence 999886 66789999999999999999999999999999887 99999999999999
Q ss_pred HHHHHhhhhheeccccchhHHHHHHHHHHHHHHH
Q 007816 169 AAVIGVTGIVYVFTEKSWWLGFLVSSVANFIGLI 202 (588)
Q Consensus 169 G~~ig~~~~~~i~~~~~w~~~f~i~~~~~~~~~~ 202 (588)
|..++|.+++++.+..+||+.|++.++..++..+
T Consensus 136 g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 169 (375)
T 2gfp_A 136 SPLLAPLIGGLLDTMWNWRACYLFLLVLCAGVTF 169 (375)
T ss_dssp HHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHhhHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence 9999999999999888999999988776555444
No 7
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=99.89 E-value=9.2e-24 Score=222.42 Aligned_cols=400 Identities=10% Similarity=0.005 Sum_probs=232.9
Q ss_pred CCCCcchHHHHHHHHHHHHHHHHHhHHHHHHHchhccCCChhhHHHHHHHHHHHHHHHhhhhHHhhhcccchhHHHHHHH
Q 007816 1 MLLTTCNFFVYVVFSALENMGFIANGISMVLYFKNEMHFDLAGASNTLTNFFGSTFLLCLVGGFISDTFLSRFATCLIFG 80 (588)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~l~~G~l~D~~~GRr~~i~i~~ 80 (588)
.++++|++|.+....++..+++..+.+.++.|+++++|+|..+.|++.+.+.++..++++++|+++|| +|||++++++.
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~lsDr-~Grr~~l~~~~ 80 (417)
T 2cfq_A 2 YYLKNTNFWMFGLFFFFYFFIMGAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDK-LGLRKYLLWII 80 (417)
T ss_dssp TTTSCHHHHHHHHHHHHHHHHHHHHTTTHHHHHHTTTCCCTTTSHHHHHHHHHHHHHHHHHHHHHHTT-STTCCHHHHHH
T ss_pred ccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcchHHHHHHH
Confidence 36899999999999999888888889999999999999999999999999999999999999999999 99999999998
Q ss_pred HHHHHHHHHH---HHhhccccCCCCCCCCCCcCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCCchhhhhhhh
Q 007816 81 TLEVLALVML---TIQAYSKNLHPPDCGKSSCLKGAIAAYFYGSLYLYSFGCGGNRGTLPAFGAGQFDENDPKGAKALAS 157 (588)
Q Consensus 81 ~i~~ig~~l~---~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~GiG~g~~~~~~~~~iae~~~~~~~~~~~~Rg~ 157 (588)
.++.++.... +++.... ..++.++++.|++.|...+...+...+..++. .+.|+.
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~------------------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~----~~~~~~ 138 (417)
T 2cfq_A 81 TGMLVMFAPFFIFIFGPLLQ------------------YNILVGSIVGGIYLGFCFNAGAPAVEAFIEKV----SRRSNF 138 (417)
T ss_dssp HHTTSCHHHHHHHTHHHHHH------------------TTCCHHHHGGGSSTTHHHHTTHHHHHHHHHHH----HHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHH------------------HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHh----hhhccc
Confidence 8876643211 2221100 01345666666666655555444444443311 112566
Q ss_pred HHHHHHHHHHHHHHHHhhhhheeccccchhHHHHHHHHHHHHHHHHHHhhccceeecCCCCChhHHHHHHHHHHHHhcCC
Q 007816 158 YFNFYLLATTVAAVIGVTGIVYVFTEKSWWLGFLVSSVANFIGLIALAAGKCLYRIQQPGESPLVRVAQVLVVAIKNRKL 237 (588)
Q Consensus 158 ~~~~~~~~~~iG~~ig~~~~~~i~~~~~w~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (588)
.++......++|..++|.+++++.+ .+||+.|++.++..++..+..+...|+ ++++.++ .
T Consensus 139 ~~g~~~~~~~~g~~~~~~l~~~l~~-~~~~~~f~~~~~~~~~~~~~~~~~~~~---~~~~~~~----------------~ 198 (417)
T 2cfq_A 139 EFGRARMFGCVGWALGASIVGIMFT-INNQFVFWLGSGCALILAVLLFFAKTD---APSSATV----------------A 198 (417)
T ss_dssp CHHHHSSSTTTHHHHHHHHHHHHHH-HCSHHHHTTTTTTTTTHHHHSCSSCCC---CSCSSCS----------------S
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHH-hchhHHHHHHHHHHHHHHHHHHHcCcc---ccccccc----------------c
Confidence 7777777788999999999988875 589999987665533333222211111 0000000 0
Q ss_pred CCCCCchhhhhhhhhhhcccccccCCCcchhhhhhhccCCCCCCCCCCcc-cccccchHHHHHHHHHHHHHHHHHHHHHh
Q 007816 238 SLPDNPEELYEINEKERASTWERIPHANQFRCLDKAAIMPKDSAVAAPWR-VCTVTQVEEVKILTRMMPILASTILMNTC 316 (588)
Q Consensus 238 ~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 316 (588)
+..+ . ..+.... ..++ .++ + ++..............+..
T Consensus 199 ~~~~-----------------~---~~~~~~~--------------~~~~~~~~-----~-~~~~~~~~~~~~~~~~~~~ 238 (417)
T 2cfq_A 199 NAVG-----------------A---NHSAFSL--------------KLALELFR-----Q-PKLWFLSLYVIGVSCTYDV 238 (417)
T ss_dssp SSSS-----------------S---CCCCCCH--------------HHHHHHTT-----C-HHHHHHHHHHHHHHHHHHH
T ss_pred cccc-----------------c---ccccccH--------------HHHHHHhc-----C-CchhhHHHHHHHHHHHHHH
Confidence 0000 0 0000000 0000 001 0 1111111111111111112
Q ss_pred hhhchhHHHHHhhhcCCCCCcc-cccCCcccchhHHHHHHHHHhhhHhHHhhhhhccCCCCCCCchHHHHHHHHHHHHHH
Q 007816 317 LAQLQTFSITQGAAMDPHLGSI-KVPTSSIPVIPLLFMSILLPLYEFFFVPFARKITGHPSGITQLQRVGIGLVLSAVSM 395 (588)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~rr~~~~~~~~~~~~~~~~G~~l~~~~~ 395 (588)
+.+....+..+. .... +. ....+.....+.+..++..++..++.|+++||+. +..+.+++++++
T Consensus 239 ~~~~~~~~~~~~--~~~~--~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~-----------l~~~~~~~~~~~ 303 (417)
T 2cfq_A 239 FDQQFANFFTSF--FATG--EQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNA-----------LLLAGTIMSVRI 303 (417)
T ss_dssp HHHHHHHHHHHT--SSSH--HHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHH-----------HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH--Hhcc--CCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHH-----------HHHHHHHHHHHH
Confidence 222222221111 1100 00 0001222233334444455556666555576652 445666555554
Q ss_pred HHHHHHHHHHhhhccCCCCccchHHHHHHHHHHHHHHHHHHhhhhhhhhhcccCcchhhHHHHHH-HHHHHHHHHHHHHH
Q 007816 396 TVAGLVEVIRRNAFNETPPKQISLFWLSFQYCIFGIADMFTFIGLLEFFYKEAPAGMKTLASSFT-YLSLSFGYFLSSAF 474 (588)
Q Consensus 396 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~P~~~rg~~~~~~-~~~~~l~~~i~~~~ 474 (588)
+..... .+.+.+++..++.+++.....+..+.++.|.+|++.||++.++. +..+.+++.+++.+
T Consensus 304 ~~~~~~---------------~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~lg~~~gp~l 368 (417)
T 2cfq_A 304 IGSSFA---------------TSALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVL 368 (417)
T ss_dssp HHHTTC---------------CSHHHHHHHTTHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTHHHHHHHHTHH
T ss_pred HHHHHh---------------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhHHHHHhhhh
Confidence 433211 12333444444455555566667788999999999999999984 77888999999998
Q ss_pred HHHhhhhhcccCCCCCCCccCCCCCCcchHHHHHHHHHHHHHHHHHHHHhhccccccc
Q 007816 475 VDIINAVTKRITPSKQGWLHGKDINKNNVNLFYWFLAIVSVLNLVLYLYAAAWYKYKP 532 (588)
Q Consensus 475 ~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~f~~~a~~~~~~~v~~~~~~~e~~~~~ 532 (588)
.+.+.+. .++...|++.+++++++.++.+++.||++..+
T Consensus 369 ~G~l~~~-------------------~g~~~~f~~~~~~~l~~~~~~~~~~~~~~~~~ 407 (417)
T 2cfq_A 369 AGNMYES-------------------IGFQGAYLVLGLVALGFTLISVFTLSGPGPLS 407 (417)
T ss_dssp HHTHHHH-------------------SHHHHHHHHHHHHHHHHHHHHTTSSCCSCTTC
T ss_pred HHHHHHh-------------------cCcHHHHHHHHHHHHHHHHHHHhhhcCCCchH
Confidence 8876431 12455688888888888877776666544433
No 8
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=99.52 E-value=1.7e-13 Score=144.64 Aligned_cols=181 Identities=14% Similarity=0.074 Sum_probs=158.7
Q ss_pred CCCcchHHHHHHHHHHHHHHHHHhHHHHHHHchhccCCChhhHHHHHHHHHHHHHHHhhhhHHhhhccc--chhHHHHHH
Q 007816 2 LLTTCNFFVYVVFSALENMGFIANGISMVLYFKNEMHFDLAGASNTLTNFFGSTFLLCLVGGFISDTFL--SRFATCLIF 79 (588)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~l~~G~l~D~~~--GRr~~i~i~ 79 (588)
++++|.+|.+++..++..+.++++...++.|+++.+|++..+.+++.+.+.++..++.++.|++.|| + |||+.+.++
T Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~-~~~~~~~~~~~~ 326 (451)
T 1pw4_A 248 VLPNKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDK-VFRGNRGATGVF 326 (451)
T ss_dssp TSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TSTTCHHHHHHH
T ss_pred HHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhcCCchhHHHH
Confidence 4678899999999999999999999999999999999999999999999999999999999999999 9 999999888
Q ss_pred HHHHH-HHHHHHHHhhccccCCCCCCCCCCcCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCCchhhhhhhhH
Q 007816 80 GTLEV-LALVMLTIQAYSKNLHPPDCGKSSCLKGAIAAYFYGSLYLYSFGCGGNRGTLPAFGAGQFDENDPKGAKALASY 158 (588)
Q Consensus 80 ~~i~~-ig~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~GiG~g~~~~~~~~~iae~~~~~~~~~~~~Rg~~ 158 (588)
..+.. ++.++..+.. ..+.+.+.+..++.|++.+...+....++.|.+|+++ |++.
T Consensus 327 ~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~g~~ 383 (451)
T 1pw4_A 327 FMTLVTIATIVYWMNP-----------------AGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKA------AGTA 383 (451)
T ss_dssp HHHHHHHHHHHTTSCC-----------------TTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTH------HHHH
T ss_pred HHHHHHHHHHHHHHhc-----------------ccCHHHHHHHHHHHHHHHhchHHHHHHHHHHHhchhh------hhhH
Confidence 87776 5555554442 1255677888889999999999999999999999877 9999
Q ss_pred HHHHHHHHHH-HHHHHhhhhheeccccchhHHHHHHHHHHHHHHHHHHh
Q 007816 159 FNFYLLATTV-AAVIGVTGIVYVFTEKSWWLGFLVSSVANFIGLIALAA 206 (588)
Q Consensus 159 ~~~~~~~~~i-G~~ig~~~~~~i~~~~~w~~~f~i~~~~~~~~~~~~~~ 206 (588)
++++....++ |..++|.+.+++.+..+|+..|++.+++.+++.++.+.
T Consensus 384 ~~~~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~ 432 (451)
T 1pw4_A 384 AGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIV 432 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHSSCSHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999 99999999999999899999999988877666665544
No 9
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=99.34 E-value=9.6e-12 Score=130.75 Aligned_cols=172 Identities=12% Similarity=0.016 Sum_probs=143.7
Q ss_pred CCCcchHHHHHHHHHHHHHHHHHhHHHHHHH-chhccCCChhhHHHHHHHHHHHHHHHhhhhHHhhhcccchhHHHHHHH
Q 007816 2 LLTTCNFFVYVVFSALENMGFIANGISMVLY-FKNEMHFDLAGASNTLTNFFGSTFLLCLVGGFISDTFLSRFATCLIFG 80 (588)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~~~~~i~~~~~~~~~~~~l~~G~l~D~~~GRr~~i~i~~ 80 (588)
++++|.+|..++..++.....+++.+.++.| +++.+|++..+.+++.+.+.++..++.+++|++.|| +|||+.+.++.
T Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r-~~~~~~~~~~~ 332 (438)
T 3o7q_A 254 LARIRHWRWAVLAQFCYVGAQTACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISR-FAPHKVLAAYA 332 (438)
T ss_dssp HTTCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-SCHHHHHHHHH
T ss_pred HHhChHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHH-hcchHHHHHHH
Confidence 3678889999999999999999999999999 888899999999999999999999999999999999 89999999999
Q ss_pred HHHHHHHHHHHHhhccccCCCCCCCCCCcCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCCchhhhhhhhHHH
Q 007816 81 TLEVLALVMLTIQAYSKNLHPPDCGKSSCLKGAIAAYFYGSLYLYSFGCGGNRGTLPAFGAGQFDENDPKGAKALASYFN 160 (588)
Q Consensus 81 ~i~~ig~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~GiG~g~~~~~~~~~iae~~~~~~~~~~~~Rg~~~~ 160 (588)
++..++.++..+.+ +.+. ++.-++.|++.+...|...++..|.+|++ |+...+
T Consensus 333 ~~~~~~~~~~~~~~-------------------~~~~-~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-------~~~~~~ 385 (438)
T 3o7q_A 333 LIAMALCLISAFAG-------------------GHVG-LIALTLCSAFMSIQYPTIFSLGIKNLGQD-------TKYGSS 385 (438)
T ss_dssp HHHHHHHHHHHHCC-------------------HHHH-HHHHHHHHHHHTTHHHHHHHHHHSSCGGG-------HHHHHH
T ss_pred HHHHHHHHHHHHcC-------------------CcHH-HHHHHHHHHHHHHHHHHHHHHHHhhcccc-------ccchhh
Confidence 99988888777765 2223 33448899999999999999999998832 445555
Q ss_pred HHHHHHHHHHHHHhhhhheeccccc-hhHHHHHHHHHHHHHHH
Q 007816 161 FYLLATTVAAVIGVTGIVYVFTEKS-WWLGFLVSSVANFIGLI 202 (588)
Q Consensus 161 ~~~~~~~iG~~ig~~~~~~i~~~~~-w~~~f~i~~~~~~~~~~ 202 (588)
+.. ...+|..++|.+.|++.+..+ ++..|.+.++..++..+
T Consensus 386 ~~~-~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~ 427 (438)
T 3o7q_A 386 FIV-MTIIGGGIVTPVMGFVSDAAGNIPTAELIPALCFAVIFI 427 (438)
T ss_dssp HHH-HTTHHHHHHHHHHHHHHHHHTSSGGGGHHHHHHHHHHHH
T ss_pred HHH-HHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHH
Confidence 544 566999999999999998888 99998887655444333
No 10
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=99.31 E-value=4e-12 Score=133.28 Aligned_cols=178 Identities=8% Similarity=-0.032 Sum_probs=137.0
Q ss_pred CCcchHHHHHHHHHHHHHHHHHhHHHHHHHchhccCC---ChhhHHHHHHHHHHHHHHHhhhhHHhhhcccchhHHHHHH
Q 007816 3 LTTCNFFVYVVFSALENMGFIANGISMVLYFKNEMHF---DLAGASNTLTNFFGSTFLLCLVGGFISDTFLSRFATCLIF 79 (588)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~---~~~~~~~i~~~~~~~~~~~~l~~G~l~D~~~GRr~~i~i~ 79 (588)
++.|.+|..++..++....++...+.++.|+.+.++. +....+.+.+...++..++.+++|++.|| +|||+++.++
T Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr-~g~~~~l~~~ 295 (417)
T 2cfq_A 217 FRQPKLWFLSLYVIGVSCTYDVFDQQFANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINR-IGGKNALLLA 295 (417)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHH-HCHHHHHHHH
T ss_pred hcCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHH-hcHHHHHHHH
Confidence 4567777777665655556666666777788776653 23455777777777888899999999999 8999999988
Q ss_pred HHHHHHHHHHHHHhhccccCCCCCCCCCCcCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCCchhhhhhhhHH
Q 007816 80 GTLEVLALVMLTIQAYSKNLHPPDCGKSSCLKGAIAAYFYGSLYLYSFGCGGNRGTLPAFGAGQFDENDPKGAKALASYF 159 (588)
Q Consensus 80 ~~i~~ig~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~GiG~g~~~~~~~~~iae~~~~~~~~~~~~Rg~~~ 159 (588)
..+..++.++.++.+ +.+.+++..++.+++.+...+....+++|.+|++. |++..
T Consensus 296 ~~~~~~~~~~~~~~~-------------------~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~------~g~~~ 350 (417)
T 2cfq_A 296 GTIMSVRIIGSSFAT-------------------SALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRF------SATIY 350 (417)
T ss_dssp HHHHHHHHHHHTTCC-------------------SHHHHHHHTTHHHHHHHHHHHHHHHHHHHHSCHHH------HHHHH
T ss_pred HHHHHHHHHHHHHhc-------------------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH------HHHHH
Confidence 888887766665443 34567777788888888777878899999999766 88888
Q ss_pred HH-HHHHHHHHHHHHhhhhheeccccchhHHHHHHHHHHHHHHHHHHh
Q 007816 160 NF-YLLATTVAAVIGVTGIVYVFTEKSWWLGFLVSSVANFIGLIALAA 206 (588)
Q Consensus 160 ~~-~~~~~~iG~~ig~~~~~~i~~~~~w~~~f~i~~~~~~~~~~~~~~ 206 (588)
++ +....++|..++|.++|++.+..+++..|.+.+++.+++.++.+.
T Consensus 351 g~~~~~~~~lg~~~gp~l~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~ 398 (417)
T 2cfq_A 351 LVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISVF 398 (417)
T ss_dssp HHHHTTTHHHHHHHHTHHHHTHHHHSHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhHHHHHhhhhHHHHHHhcCcHHHHHHHHHHHHHHHHHHHh
Confidence 88 467778999999999999988888998998887776666665444
No 11
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=99.08 E-value=3.2e-10 Score=121.06 Aligned_cols=185 Identities=9% Similarity=-0.055 Sum_probs=140.2
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHchhccCCChhhHHHHHHHHHHHHHHHhhhhHHhhhcccchhHHHH-----HHHHH
Q 007816 8 FFVYVVFSALENMGFIANGISMVLYFKNEMHFDLAGASNTLTNFFGSTFLLCLVGGFISDTFLSRFATCL-----IFGTL 82 (588)
Q Consensus 8 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~l~~G~l~D~~~GRr~~i~-----i~~~i 82 (588)
.+.+++..++....++...+.++.|+.+.++.+..+.+++.+...++..++.++.|++.|| +|||+... ++..+
T Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r-~~~r~~~~~~~~~~~~~~ 363 (491)
T 4aps_A 285 YIPLFIAAVLFWAIEEQGSVVLATFAAERVDSSWFPVSWFQSLNPLFIMLYTPFFAWLWTA-WKKNQPSSPTKFAVGLMF 363 (491)
T ss_dssp HHHHHHHHHHHHHHHGGGGTHHHHHHHHSCCCSSSCSGGGTTHHHHHHHHHHHHHHHHHHH-TTTC---CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhccHHHHHHHHHHhccCccCHHHHhccchHHHHHHHHHHHHHHHH-HhccCCCchHHHHHHHHH
Confidence 4555556666667777777888889998888887888999999999999999999999999 89987655 77777
Q ss_pred HHHHHHHHHHhhccccCCCCCCCCCCcCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCCchhhhhhhhHHHHH
Q 007816 83 EVLALVMLTIQAYSKNLHPPDCGKSSCLKGAIAAYFYGSLYLYSFGCGGNRGTLPAFGAGQFDENDPKGAKALASYFNFY 162 (588)
Q Consensus 83 ~~ig~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~GiG~g~~~~~~~~~iae~~~~~~~~~~~~Rg~~~~~~ 162 (588)
..++.++.+....... .+...+.+.+++.-++.|+|.+...+...+++.|.+|++. |++.++++
T Consensus 364 ~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~------~g~~~g~~ 427 (491)
T 4aps_A 364 AGLSFLLMAIPGALYG----------TSGKVSPLWLVGSWALVILGEMLISPVGLSVTTKLAPKAF------NSQMMSMW 427 (491)
T ss_dssp HHHHHTTTHHHHHHCC----------CCTTCCTHHHHHHHHHHHHHHHTTTTHHHHHHHHHTTTTC------SSSSTHHH
T ss_pred HHHHHHHHHHHHHhcC----------CCCCccHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHH------HHHHHHHH
Confidence 7777766665431100 0001245677888899999999999999999999999988 99999999
Q ss_pred HHHHHHHHHHHhhhhheeccccchhHHHHHHHHHHHHHHHHHHhhccc
Q 007816 163 LLATTVAAVIGVTGIVYVFTEKSWWLGFLVSSVANFIGLIALAAGKCL 210 (588)
Q Consensus 163 ~~~~~iG~~ig~~~~~~i~~~~~w~~~f~i~~~~~~~~~~~~~~~~~~ 210 (588)
....++|..+++.+.+++.+ .++...|.+.++..++..++.+...++
T Consensus 428 ~~~~~~g~~i~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 474 (491)
T 4aps_A 428 FLSSSVGSALNAQLVTLYNA-KSEVAYFSYFGLGSVVLGIVLVFLSKR 474 (491)
T ss_dssp HHHHHHHHHHHHHHGGGGGG-SSTTHHHHHTHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHHHHHHhc-ccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999888865 466777777776666665555554443
No 12
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=99.00 E-value=9.5e-09 Score=109.54 Aligned_cols=184 Identities=9% Similarity=-0.063 Sum_probs=127.0
Q ss_pred chHHHHHHHHHHHHHHHHHhHHHHHHHchhccCCChhhHHHHHHHHHHHHHHHhhhhHHhhhcccchhHHHHHHHHHHHH
Q 007816 6 CNFFVYVVFSALENMGFIANGISMVLYFKNEMHFDLAGASNTLTNFFGSTFLLCLVGGFISDTFLSRFATCLIFGTLEVL 85 (588)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~l~~G~l~D~~~GRr~~i~i~~~i~~i 85 (588)
+..+..+....+..+..+.......+++.+..+.+............+...++.++++++.|| +|||+.++.+.....+
T Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr-~Grr~~~~~~~~~~~~ 354 (491)
T 4gc0_A 276 GVIVIGVMLSIFQQFVGINVVLYYAPEVFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDK-FGRKPLQIIGALGMAI 354 (491)
T ss_dssp THHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HCSHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhhhHHHhcchHHHHhcCCCccchhhHHHHHHHHHHHHHHHHHHHHHh-hcCcchhccchHHHHH
Confidence 334444444455445444455555566777788888888888888888999999999999999 8999999999999888
Q ss_pred HHHHHHHhhccccCCCCCCCCCCcCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCCchhhhhhhhHHHHHHHH
Q 007816 86 ALVMLTIQAYSKNLHPPDCGKSSCLKGAIAAYFYGSLYLYSFGCGGNRGTLPAFGAGQFDENDPKGAKALASYFNFYLLA 165 (588)
Q Consensus 86 g~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~GiG~g~~~~~~~~~iae~~~~~~~~~~~~Rg~~~~~~~~~ 165 (588)
+.+..+....... ..........-...+++.+ ..|....|.+|++|.+. |++.+++....
T Consensus 355 ~~~~l~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~E~fPt~~------R~~~~g~~~~~ 414 (491)
T 4gc0_A 355 GMFSLGTAFYTQA-------------PGIVALLSMLFYVAAFAMS-WGPVCWVLLSEIFPNAI------RGKALAIAVAA 414 (491)
T ss_dssp HHHHHHHHHHTTC-------------CHHHHHHHHHHHHHHHHTT-TTHHHHHHHHHSSCTTT------HHHHHHHHHHH
T ss_pred HHHHHHHHHhccc-------------chHHHHHHHHHHHHHHHhH-HHHHHHHHHHHhCCHhH------HHHHHHHHHHH
Confidence 8777665532111 1112222222222333333 44677789999999988 99999999999
Q ss_pred HHHHHHHHhhhhheecc------ccchhHHHHHHHHHHHHHHHHHHhhccc
Q 007816 166 TTVAAVIGVTGIVYVFT------EKSWWLGFLVSSVANFIGLIALAAGKCL 210 (588)
Q Consensus 166 ~~iG~~ig~~~~~~i~~------~~~w~~~f~i~~~~~~~~~~~~~~~~~~ 210 (588)
.++|..+++.+...+.. ..++...|++.+++.+++.++.++..||
T Consensus 415 ~~~~~~i~~~~~p~l~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~PE 465 (491)
T 4gc0_A 415 QWLANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMWKFVPE 465 (491)
T ss_dssp HHHHHHHHHTHHHHHCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHheecC
Confidence 99999888877655532 2455667777777777777766666665
No 13
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=98.95 E-value=1.9e-10 Score=118.32 Aligned_cols=168 Identities=11% Similarity=-0.019 Sum_probs=134.6
Q ss_pred CCcchHHHHHHHHHHHHHHHHHhHHHHHHHchhccCCChhhHHHHHHHHHHHHHHHhhhhHHhhhcccchhHHHHHHHHH
Q 007816 3 LTTCNFFVYVVFSALENMGFIANGISMVLYFKNEMHFDLAGASNTLTNFFGSTFLLCLVGGFISDTFLSRFATCLIFGTL 82 (588)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~l~~G~l~D~~~GRr~~i~i~~~i 82 (588)
+++|.+|...+..++...+.+++....+.|+++.+|.+..+.+.+.+...++..++.++.|++.|| +||+ +.++...
T Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r-~~~~--~~~~~~~ 272 (375)
T 2gfp_A 196 FGNSGFNCYLLMLIGGLAGIAAFEACSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKR-FSTL--MWQSVIC 272 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCSCSSHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHTTTTH-HHHH--HHHHHHH
T ss_pred hcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHH--HHHHHHH
Confidence 456788999999999999999999999999999899999999999999999999999999999999 8883 3333333
Q ss_pred -HHHHHHHHHHhhccccCCCCCCCCCCcCCchhHHHHHHHHHHHHHhccccccchhhhhhccCCCCCchhhhhhhhHHHH
Q 007816 83 -EVLALVMLTIQAYSKNLHPPDCGKSSCLKGAIAAYFYGSLYLYSFGCGGNRGTLPAFGAGQFDENDPKGAKALASYFNF 161 (588)
Q Consensus 83 -~~ig~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~GiG~g~~~~~~~~~iae~~~~~~~~~~~~Rg~~~~~ 161 (588)
...+..+....... ..+.+.+++.-++.|++.|...+...+++.|..| ++ |++.+++
T Consensus 273 ~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p-~~------~g~~~g~ 330 (375)
T 2gfp_A 273 CLLAGLLMWIPDWFG---------------VMNVWTLLVPAALFFFGAGMLFPLATSGAMEPFP-FL------AGTAGAL 330 (375)
T ss_dssp HHHTSSSSSHHHHHH---------------HHHHHHHHHHHHHHHHHHHHTSSTTHHHHHTHHH-HH------HHHHHHH
T ss_pred HHHHHHHHHHHhhhc---------------cccHHHHHHHHHHHHHHHHHhhHHHHHHHHHhCC-cc------cchHHHH
Confidence 33333221211100 1145667788899999999999999999999987 55 9999999
Q ss_pred HHHHHHHHHHHHhhhhheeccccchhHHHHHHHH
Q 007816 162 YLLATTVAAVIGVTGIVYVFTEKSWWLGFLVSSV 195 (588)
Q Consensus 162 ~~~~~~iG~~ig~~~~~~i~~~~~w~~~f~i~~~ 195 (588)
.....++|..+++.+.+.+.+..+|+..+.+...
T Consensus 331 ~~~~~~~g~~~~~~~~g~l~~~~~~~~~~~~~~~ 364 (375)
T 2gfp_A 331 VGGLQNIGSGVLASLSAMLPQTGQGSLGLLMTLM 364 (375)
T ss_dssp HHHHHHHHHHCCSTTCTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCcccHHHHHHHH
Confidence 9999999999999999998877778877776443
No 14
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=98.22 E-value=8.6e-06 Score=87.32 Aligned_cols=134 Identities=11% Similarity=0.070 Sum_probs=92.7
Q ss_pred cchhHHHHHHHHHhhhHhHHhh-hhhccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCccchHHHHHH
Q 007816 346 PVIPLLFMSILLPLYEFFFVPF-ARKITGHPSGITQLQRVGIGLVLSAVSMTVAGLVEVIRRNAFNETPPKQISLFWLSF 424 (588)
Q Consensus 346 ~~~~~l~~~~~~~l~~~~~~~~-~rr~~~~~~~~~~~~~~~~G~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 424 (588)
.....++..++.++..++.|++ +||+. +.++.++.+++.++.... +.+.+.+.+
T Consensus 60 ~~~~~~~~~~~~~~~G~l~dr~~g~r~~-----------~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~ 114 (524)
T 2xut_A 60 FHSFVIGVYFFPLLGGWIADRFFGKYNT-----------ILWLSLIYCVGHAFLAIF--------------EHSVQGFYT 114 (524)
T ss_dssp HHHHHHHHHHTHHHHHHHHTTSSCSHHH-----------HHHHHHHHHHHHHHHHHT--------------SSCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcchHH-----------HHHHHHHHHHHHHHHHHh--------------cccHHHHHH
Confidence 3444555666667777776666 66653 566777777766655432 115566777
Q ss_pred HHHHHHHHHHHHhhhhhhhhhcccCcchhhHHHHH---HHHHHHHHHHHHHHHHHHhhhhhcccCCCCCCCccCCCCCCc
Q 007816 425 QYCIFGIADMFTFIGLLEFFYKEAPAGMKTLASSF---TYLSLSFGYFLSSAFVDIINAVTKRITPSKQGWLHGKDINKN 501 (588)
Q Consensus 425 ~~~~~~~~~~~~~~~~~~~~~e~~P~~~rg~~~~~---~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~ 501 (588)
..++.+++.....+...+++.|.+|++.|+++.++ ......+|..+++.+.+.+.+. .
T Consensus 115 ~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~-------------------~ 175 (524)
T 2xut_A 115 GLFLIALGSGGIKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSMPLLLKN-------------------F 175 (524)
T ss_dssp HHHHHHHHHHTTHHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTSTHHHHT-------------------S
T ss_pred HHHHHHHhccccchhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-------------------c
Confidence 78888999999999999999999999999887777 7777777877777766655321 1
Q ss_pred chHHHHHHHHHHHHHHHHHHHH
Q 007816 502 NVNLFYWFLAIVSVLNLVLYLY 523 (588)
Q Consensus 502 ~~~~~f~~~a~~~~~~~v~~~~ 523 (588)
++...|++.+++.++..+..++
T Consensus 176 g~~~~f~~~~~~~~~~~~~~~~ 197 (524)
T 2xut_A 176 GAAVAFGIPGVLMFVATVFFWL 197 (524)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHS
T ss_pred cHHHHHHHHHHHHHHHHHHHHH
Confidence 2345677777776666555443
No 15
>2zz9_A Aquaporin-4; water transport, water channel, two-dimensional crystal, electron diffraction, electron microscopy, membrane protein; HET: PEE; 2.80A {Rattus norvegicus} PDB: 2d57_A
Probab=20.98 E-value=51 Score=31.66 Aligned_cols=18 Identities=17% Similarity=0.353 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 007816 505 LFYWFLAIVSVLNLVLYL 522 (588)
Q Consensus 505 ~~f~~~a~~~~~~~v~~~ 522 (588)
|.||+-=.+..+...++|
T Consensus 209 WVy~vgPiiGailaa~ly 226 (301)
T 2zz9_A 209 WIYWVGPIIGAVLAGALY 226 (301)
T ss_dssp THHHHHHHHHHHHHHHHH
T ss_pred eeeeeHHHHHHHHHHHHH
Confidence 456654444444333333
Done!