Query 007817
Match_columns 588
No_of_seqs 438 out of 3041
Neff 9.2
Searched_HMMs 46136
Date Thu Mar 28 15:44:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007817.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/007817hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4658 Apoptotic ATPase [Sign 100.0 1.3E-75 2.7E-80 652.1 42.9 550 7-588 4-579 (889)
2 PF00931 NB-ARC: NB-ARC domain 100.0 3.4E-46 7.4E-51 376.1 17.0 276 174-457 1-284 (287)
3 PLN03210 Resistant to P. syrin 100.0 4E-40 8.7E-45 386.3 32.0 357 166-557 181-567 (1153)
4 PRK04841 transcriptional regul 99.6 2.2E-14 4.7E-19 167.5 25.6 291 168-505 13-332 (903)
5 PRK00411 cdc6 cell division co 99.5 1.1E-11 2.3E-16 130.8 26.9 302 167-484 28-358 (394)
6 COG2909 MalT ATP-dependent tra 99.4 1.7E-11 3.7E-16 131.9 22.3 297 168-507 18-340 (894)
7 TIGR02928 orc1/cdc6 family rep 99.4 2.5E-10 5.4E-15 119.1 28.2 303 168-485 14-351 (365)
8 TIGR03015 pepcterm_ATPase puta 99.4 4.7E-11 1E-15 119.0 21.5 182 196-383 43-242 (269)
9 TIGR00635 ruvB Holliday juncti 99.3 9.5E-11 2.1E-15 119.0 18.2 276 169-485 4-290 (305)
10 PF01637 Arch_ATPase: Archaeal 99.3 1.8E-11 4E-16 118.9 12.4 196 171-378 1-233 (234)
11 PRK00080 ruvB Holliday junctio 99.3 6.4E-11 1.4E-15 121.2 16.8 263 168-485 24-311 (328)
12 COG3899 Predicted ATPase [Gene 99.1 1.2E-09 2.7E-14 123.9 18.4 312 171-504 2-385 (849)
13 PF05729 NACHT: NACHT domain 99.1 3.5E-10 7.6E-15 103.7 11.3 143 197-346 1-163 (166)
14 PTZ00112 origin recognition co 99.0 1.3E-07 2.7E-12 103.4 25.1 303 168-484 754-1086(1164)
15 PF13401 AAA_22: AAA domain; P 98.8 1.3E-08 2.9E-13 89.3 9.4 119 195-315 3-125 (131)
16 COG2256 MGS1 ATPase related to 98.8 2.1E-08 4.6E-13 100.0 11.1 219 167-422 28-265 (436)
17 PRK07003 DNA polymerase III su 98.8 4.8E-07 1E-11 98.5 21.8 195 169-380 16-222 (830)
18 PRK13342 recombination factor 98.8 4.1E-08 8.9E-13 103.7 13.1 179 169-382 12-199 (413)
19 PF13191 AAA_16: AAA ATPase do 98.8 1E-08 2.2E-13 95.8 7.4 51 170-223 1-51 (185)
20 PRK06893 DNA replication initi 98.8 4.2E-08 9.2E-13 94.9 10.8 155 197-383 40-207 (229)
21 PRK04195 replication factor C 98.8 1E-06 2.2E-11 95.0 21.9 247 169-457 14-271 (482)
22 PRK05564 DNA polymerase III su 98.7 4E-07 8.8E-12 92.6 17.5 180 169-379 4-190 (313)
23 PRK14961 DNA polymerase III su 98.7 4.2E-07 9.2E-12 94.2 17.2 193 169-378 16-219 (363)
24 TIGR03420 DnaA_homol_Hda DnaA 98.7 1.2E-07 2.7E-12 91.7 12.2 172 174-383 22-205 (226)
25 PRK12402 replication factor C 98.7 5.1E-07 1.1E-11 93.1 16.7 199 169-379 15-226 (337)
26 PRK12323 DNA polymerase III su 98.7 4.1E-07 8.9E-12 97.7 16.1 199 169-379 16-225 (700)
27 PRK14949 DNA polymerase III su 98.7 4.5E-07 9.8E-12 100.6 16.8 183 169-379 16-220 (944)
28 PRK14963 DNA polymerase III su 98.7 6.6E-08 1.4E-12 103.5 9.8 194 169-376 14-214 (504)
29 PRK14960 DNA polymerase III su 98.7 6.9E-07 1.5E-11 96.2 16.6 193 169-378 15-218 (702)
30 PTZ00202 tuzin; Provisional 98.6 1.9E-06 4.2E-11 87.8 17.8 172 162-346 255-434 (550)
31 PF05496 RuvB_N: Holliday junc 98.6 5.8E-07 1.3E-11 84.1 13.1 183 168-384 23-226 (233)
32 cd00009 AAA The AAA+ (ATPases 98.6 3.3E-07 7.1E-12 81.6 11.2 125 172-317 1-131 (151)
33 COG1474 CDC6 Cdc6-related prot 98.6 4.1E-06 8.8E-11 86.2 19.9 207 170-379 18-238 (366)
34 PRK00440 rfc replication facto 98.6 1.6E-06 3.5E-11 88.6 17.1 184 169-378 17-202 (319)
35 PLN03025 replication factor C 98.6 1.3E-06 2.9E-11 89.0 16.0 183 169-377 13-198 (319)
36 PF13173 AAA_14: AAA domain 98.6 2.2E-07 4.7E-12 81.3 8.8 119 197-338 3-127 (128)
37 COG3903 Predicted ATPase [Gene 98.6 1E-07 2.3E-12 95.8 7.5 292 195-505 13-314 (414)
38 PRK06645 DNA polymerase III su 98.6 1.8E-06 3.9E-11 92.2 17.2 194 169-376 21-226 (507)
39 PRK14957 DNA polymerase III su 98.6 2E-06 4.3E-11 92.5 16.8 185 169-380 16-222 (546)
40 PRK07994 DNA polymerase III su 98.6 1.4E-06 3E-11 95.2 15.6 194 169-379 16-220 (647)
41 PRK09112 DNA polymerase III su 98.5 3E-06 6.4E-11 86.8 16.6 199 167-380 21-241 (351)
42 PF05621 TniB: Bacterial TniB 98.5 4.6E-06 1E-10 81.8 16.9 199 176-379 44-261 (302)
43 TIGR02903 spore_lon_C ATP-depe 98.5 1.9E-06 4E-11 95.1 16.0 203 169-382 154-398 (615)
44 TIGR02397 dnaX_nterm DNA polym 98.5 4.3E-06 9.4E-11 86.8 17.7 184 169-380 14-219 (355)
45 TIGR00678 holB DNA polymerase 98.5 5.3E-06 1.2E-10 77.8 16.5 91 275-375 95-187 (188)
46 PRK07471 DNA polymerase III su 98.5 5.9E-06 1.3E-10 85.1 18.0 198 168-380 18-239 (365)
47 PRK14962 DNA polymerase III su 98.5 2.4E-06 5.1E-11 90.9 15.6 198 169-397 14-240 (472)
48 PRK08691 DNA polymerase III su 98.5 2.2E-06 4.8E-11 93.3 15.2 194 169-379 16-220 (709)
49 PRK14956 DNA polymerase III su 98.5 7.7E-07 1.7E-11 93.2 11.4 196 169-377 18-220 (484)
50 PRK14958 DNA polymerase III su 98.5 3E-06 6.4E-11 91.2 15.9 180 169-378 16-219 (509)
51 PRK14951 DNA polymerase III su 98.5 4.7E-06 1E-10 90.9 17.0 198 169-379 16-225 (618)
52 PRK14964 DNA polymerase III su 98.4 4.9E-06 1.1E-10 88.3 16.1 182 169-376 13-214 (491)
53 PRK07940 DNA polymerase III su 98.4 7.6E-06 1.6E-10 85.1 16.8 192 169-379 5-213 (394)
54 PRK05896 DNA polymerase III su 98.4 5.5E-06 1.2E-10 89.3 15.8 196 169-381 16-223 (605)
55 PRK13341 recombination factor 98.4 2.7E-06 5.9E-11 94.8 13.9 172 169-374 28-212 (725)
56 PRK08903 DnaA regulatory inact 98.4 3.8E-06 8.2E-11 81.4 13.3 152 196-383 42-203 (227)
57 PRK14955 DNA polymerase III su 98.4 4.3E-06 9.3E-11 87.8 14.7 199 169-378 16-227 (397)
58 cd01128 rho_factor Transcripti 98.4 4.8E-07 1E-11 87.9 6.7 91 195-287 15-114 (249)
59 PRK14969 DNA polymerase III su 98.4 6.6E-06 1.4E-10 89.1 16.1 181 169-379 16-221 (527)
60 PRK08727 hypothetical protein; 98.4 4.5E-06 9.8E-11 80.9 13.4 148 197-376 42-201 (233)
61 KOG2028 ATPase related to the 98.4 8.5E-06 1.8E-10 80.2 14.8 157 195-374 161-331 (554)
62 PRK09111 DNA polymerase III su 98.4 7.9E-06 1.7E-10 89.2 16.4 198 169-380 24-234 (598)
63 PRK07764 DNA polymerase III su 98.4 9.6E-06 2.1E-10 91.6 16.8 191 169-377 15-219 (824)
64 PRK09087 hypothetical protein; 98.4 1E-05 2.2E-10 77.9 14.8 144 197-383 45-199 (226)
65 PRK09376 rho transcription ter 98.3 1.4E-06 2.9E-11 88.5 7.9 101 180-287 158-267 (416)
66 PRK14950 DNA polymerase III su 98.3 7.1E-06 1.5E-10 90.3 13.9 195 169-380 16-222 (585)
67 PRK14959 DNA polymerase III su 98.3 1.6E-05 3.5E-10 86.2 15.8 197 169-383 16-225 (624)
68 PRK08084 DNA replication initi 98.3 1.6E-05 3.5E-10 77.2 14.5 155 197-383 46-213 (235)
69 TIGR01242 26Sp45 26S proteasom 98.3 1.3E-05 2.9E-10 83.2 14.9 180 168-373 121-328 (364)
70 PRK14970 DNA polymerase III su 98.3 2.4E-05 5.2E-10 81.6 16.8 182 169-376 17-206 (367)
71 PRK14952 DNA polymerase III su 98.3 2.8E-05 6E-10 84.6 17.4 196 169-381 13-222 (584)
72 PF14516 AAA_35: AAA-like doma 98.3 0.00033 7.2E-09 71.7 23.7 202 167-386 9-246 (331)
73 PRK14953 DNA polymerase III su 98.2 5.2E-05 1.1E-09 81.2 18.0 185 169-380 16-221 (486)
74 PRK14087 dnaA chromosomal repl 98.2 2.4E-05 5.2E-10 83.1 15.3 171 196-383 141-323 (450)
75 PRK08451 DNA polymerase III su 98.2 5.9E-05 1.3E-09 80.9 17.5 180 169-379 14-218 (535)
76 PRK14954 DNA polymerase III su 98.2 6.5E-05 1.4E-09 82.3 17.9 197 169-375 16-224 (620)
77 PRK07133 DNA polymerase III su 98.2 5.4E-05 1.2E-09 83.4 17.2 194 169-379 18-220 (725)
78 PF00308 Bac_DnaA: Bacterial d 98.2 5.6E-05 1.2E-09 72.5 15.4 165 195-380 33-209 (219)
79 TIGR03345 VI_ClpV1 type VI sec 98.2 8.2E-06 1.8E-10 93.2 10.8 156 169-346 187-363 (852)
80 TIGR02881 spore_V_K stage V sp 98.2 4.4E-05 9.5E-10 75.5 14.4 161 170-347 7-192 (261)
81 PRK06305 DNA polymerase III su 98.1 6.4E-05 1.4E-09 79.9 16.4 183 169-379 17-223 (451)
82 PRK05642 DNA replication initi 98.1 3.1E-05 6.8E-10 75.1 12.9 156 196-383 45-212 (234)
83 PRK14971 DNA polymerase III su 98.1 7.5E-05 1.6E-09 82.2 17.1 178 169-377 17-220 (614)
84 TIGR02639 ClpA ATP-dependent C 98.1 3.1E-05 6.6E-10 87.8 14.5 157 169-346 182-358 (731)
85 PRK11331 5-methylcytosine-spec 98.1 1.8E-05 3.9E-10 82.2 11.4 119 169-300 175-297 (459)
86 PRK14948 DNA polymerase III su 98.1 9.1E-05 2E-09 81.6 17.4 196 169-379 16-222 (620)
87 TIGR00767 rho transcription te 98.1 1.1E-05 2.3E-10 82.5 9.4 90 196-287 168-266 (415)
88 KOG2227 Pre-initiation complex 98.1 8.1E-05 1.7E-09 76.1 15.4 211 167-380 148-373 (529)
89 PHA02544 44 clamp loader, smal 98.1 3.7E-05 8.1E-10 78.4 13.5 148 169-344 21-171 (316)
90 CHL00181 cbbX CbbX; Provisiona 98.1 0.00016 3.5E-09 72.2 16.9 135 197-348 60-211 (287)
91 PRK06647 DNA polymerase III su 98.1 0.00014 3.1E-09 79.2 17.7 193 169-378 16-219 (563)
92 KOG0989 Replication factor C, 98.1 3.9E-05 8.4E-10 74.3 11.6 185 168-374 35-225 (346)
93 CHL00095 clpC Clp protease ATP 98.1 3.7E-05 8E-10 88.2 13.6 157 169-345 179-353 (821)
94 PRK03992 proteasome-activating 98.1 5.6E-05 1.2E-09 79.1 13.6 179 168-372 130-336 (389)
95 KOG2543 Origin recognition com 98.0 0.00012 2.5E-09 73.2 14.5 205 168-382 5-229 (438)
96 PRK14965 DNA polymerase III su 98.0 0.0001 2.3E-09 80.8 16.0 194 169-379 16-221 (576)
97 PRK05707 DNA polymerase III su 98.0 0.00015 3.3E-09 73.7 15.8 97 275-379 105-203 (328)
98 PF05673 DUF815: Protein of un 98.0 9E-05 1.9E-09 70.5 13.0 127 165-319 23-154 (249)
99 TIGR00362 DnaA chromosomal rep 98.0 0.00032 7E-09 74.1 18.5 162 196-378 136-309 (405)
100 PRK05563 DNA polymerase III su 98.0 0.00024 5.2E-09 77.7 17.8 192 169-377 16-218 (559)
101 TIGR02880 cbbX_cfxQ probable R 98.0 0.00012 2.5E-09 73.2 13.8 133 198-347 60-209 (284)
102 COG2255 RuvB Holliday junction 98.0 0.00075 1.6E-08 65.0 17.8 181 169-383 26-227 (332)
103 PRK11034 clpA ATP-dependent Cl 97.9 4.2E-05 9E-10 85.9 10.8 158 169-346 186-362 (758)
104 PRK06620 hypothetical protein; 97.9 8.8E-05 1.9E-09 70.8 11.4 138 197-379 45-189 (214)
105 PRK07399 DNA polymerase III su 97.9 0.00047 1E-08 69.7 17.0 198 169-380 4-222 (314)
106 PF00004 AAA: ATPase family as 97.9 3.6E-05 7.8E-10 67.3 7.9 23 199-221 1-23 (132)
107 PRK14088 dnaA chromosomal repl 97.9 0.00021 4.6E-09 75.9 15.0 162 196-378 130-304 (440)
108 COG3267 ExeA Type II secretory 97.9 0.00077 1.7E-08 64.1 16.4 180 195-382 50-248 (269)
109 PRK12422 chromosomal replicati 97.9 0.00031 6.8E-09 74.5 15.2 134 196-348 141-286 (445)
110 TIGR03346 chaperone_ClpB ATP-d 97.8 8E-05 1.7E-09 85.8 10.8 157 169-346 173-349 (852)
111 PRK00149 dnaA chromosomal repl 97.8 0.00048 1.1E-08 73.8 15.8 162 196-378 148-321 (450)
112 PRK14086 dnaA chromosomal repl 97.8 0.00049 1.1E-08 74.5 15.2 159 197-376 315-485 (617)
113 TIGR00602 rad24 checkpoint pro 97.8 0.00015 3.2E-09 79.5 10.8 52 168-220 83-134 (637)
114 smart00382 AAA ATPases associa 97.7 0.00019 4.1E-09 63.0 9.7 88 197-289 3-91 (148)
115 PRK10865 protein disaggregatio 97.7 0.0005 1.1E-08 79.0 15.0 156 169-346 178-354 (857)
116 PRK08769 DNA polymerase III su 97.7 0.0012 2.5E-08 66.7 15.9 182 176-380 11-209 (319)
117 PF13177 DNA_pol3_delta2: DNA 97.7 0.00068 1.5E-08 61.7 12.8 138 173-334 1-162 (162)
118 PRK06090 DNA polymerase III su 97.7 0.0025 5.4E-08 64.3 17.5 177 176-379 10-201 (319)
119 KOG0991 Replication factor C, 97.6 0.00061 1.3E-08 63.5 11.3 103 169-299 27-136 (333)
120 TIGR00763 lon ATP-dependent pr 97.6 0.004 8.7E-08 71.2 20.5 165 169-346 320-505 (775)
121 PTZ00454 26S protease regulato 97.6 0.001 2.2E-08 69.4 14.4 179 169-373 145-351 (398)
122 PRK10536 hypothetical protein; 97.6 0.0006 1.3E-08 65.8 11.5 135 169-316 55-213 (262)
123 PRK08116 hypothetical protein; 97.6 0.00025 5.3E-09 70.2 9.1 103 197-315 115-220 (268)
124 PRK06871 DNA polymerase III su 97.6 0.004 8.6E-08 63.0 17.7 176 177-376 10-200 (325)
125 COG0593 DnaA ATPase involved i 97.6 0.00093 2E-08 68.9 13.0 152 195-365 112-276 (408)
126 TIGR02640 gas_vesic_GvpN gas v 97.6 0.0029 6.3E-08 62.5 16.2 55 176-244 9-63 (262)
127 PRK08118 topology modulation p 97.6 3.9E-05 8.4E-10 70.3 2.6 35 198-232 3-37 (167)
128 COG2812 DnaX DNA polymerase II 97.6 0.00018 4E-09 76.3 7.6 189 169-374 16-215 (515)
129 PF10443 RNA12: RNA12 protein; 97.5 0.011 2.4E-07 61.0 19.8 203 174-390 1-289 (431)
130 KOG1969 DNA replication checkp 97.5 0.0059 1.3E-07 66.1 18.3 86 193-297 323-408 (877)
131 PRK08058 DNA polymerase III su 97.5 0.0021 4.6E-08 65.7 14.8 162 171-345 7-181 (329)
132 PTZ00361 26 proteosome regulat 97.5 0.00054 1.2E-08 72.1 10.3 158 169-347 183-368 (438)
133 COG1373 Predicted ATPase (AAA+ 97.5 0.0014 3E-08 68.7 13.2 119 198-342 39-163 (398)
134 TIGR01241 FtsH_fam ATP-depende 97.5 0.0021 4.5E-08 69.8 15.1 185 169-379 55-267 (495)
135 COG0542 clpA ATP-binding subun 97.5 0.00043 9.4E-09 76.5 9.4 126 169-303 491-620 (786)
136 PRK10865 protein disaggregatio 97.5 0.0016 3.5E-08 74.9 14.5 125 169-302 568-696 (857)
137 TIGR03689 pup_AAA proteasome A 97.5 0.0011 2.4E-08 70.9 12.0 168 169-346 182-378 (512)
138 PRK13531 regulatory ATPase Rav 97.4 0.00096 2.1E-08 70.2 11.2 153 169-345 20-193 (498)
139 CHL00176 ftsH cell division pr 97.4 0.0011 2.3E-08 73.4 12.2 177 169-371 183-386 (638)
140 PRK10787 DNA-binding ATP-depen 97.4 0.0027 5.9E-08 72.0 15.7 167 168-347 321-507 (784)
141 PRK07261 topology modulation p 97.4 0.00033 7.2E-09 64.4 7.0 66 198-286 2-67 (171)
142 PRK06964 DNA polymerase III su 97.4 0.0046 9.9E-08 63.1 15.6 93 275-379 131-225 (342)
143 TIGR02639 ClpA ATP-dependent C 97.4 0.0023 5E-08 72.7 14.9 120 169-302 454-579 (731)
144 PRK07993 DNA polymerase III su 97.4 0.01 2.3E-07 60.5 17.7 179 177-378 10-203 (334)
145 KOG1514 Origin recognition com 97.3 0.0072 1.6E-07 65.2 16.3 209 169-383 396-625 (767)
146 PF02562 PhoH: PhoH-like prote 97.3 0.00051 1.1E-08 64.4 6.9 130 173-315 4-155 (205)
147 TIGR03345 VI_ClpV1 type VI sec 97.3 0.001 2.2E-08 76.4 10.5 135 169-314 566-717 (852)
148 KOG0744 AAA+-type ATPase [Post 97.3 0.002 4.4E-08 63.0 10.8 81 196-286 177-260 (423)
149 TIGR03346 chaperone_ClpB ATP-d 97.3 0.0014 3E-08 75.6 11.6 126 169-303 565-694 (852)
150 PRK12377 putative replication 97.3 0.00043 9.3E-09 67.3 6.1 100 197-314 102-204 (248)
151 PRK12608 transcription termina 97.3 0.0022 4.8E-08 65.3 11.2 102 177-285 119-229 (380)
152 PRK06526 transposase; Provisio 97.3 0.00055 1.2E-08 67.0 6.4 100 197-316 99-201 (254)
153 PRK04132 replication factor C 97.2 0.0063 1.4E-07 68.9 15.3 157 204-380 574-732 (846)
154 COG0470 HolB ATPase involved i 97.2 0.0028 6.2E-08 64.7 11.8 145 171-335 3-170 (325)
155 PF01695 IstB_IS21: IstB-like 97.2 0.00051 1.1E-08 63.5 5.6 99 197-315 48-149 (178)
156 PF04665 Pox_A32: Poxvirus A32 97.2 0.00051 1.1E-08 65.9 5.7 36 197-235 14-49 (241)
157 smart00763 AAA_PrkA PrkA AAA d 97.2 0.00032 6.8E-09 71.1 4.3 53 170-222 52-104 (361)
158 PRK08699 DNA polymerase III su 97.2 0.007 1.5E-07 61.6 13.8 71 275-345 112-184 (325)
159 PRK08181 transposase; Validate 97.2 0.00087 1.9E-08 66.0 7.1 101 197-316 107-209 (269)
160 TIGR02902 spore_lonB ATP-depen 97.2 0.002 4.3E-08 70.2 10.4 172 170-347 66-277 (531)
161 PRK04296 thymidine kinase; Pro 97.2 0.0009 2E-08 62.7 6.8 114 197-318 3-118 (190)
162 CHL00095 clpC Clp protease ATP 97.2 0.0024 5.1E-08 73.6 11.3 124 169-303 509-638 (821)
163 PF07693 KAP_NTPase: KAP famil 97.2 0.01 2.2E-07 60.7 15.0 46 175-223 2-47 (325)
164 COG2884 FtsE Predicted ATPase 97.1 0.0049 1.1E-07 56.1 10.5 123 197-323 29-204 (223)
165 PRK08939 primosomal protein Dn 97.1 0.0025 5.4E-08 64.2 9.8 121 173-314 135-259 (306)
166 PRK07952 DNA replication prote 97.1 0.0024 5.1E-08 62.0 9.2 102 196-314 99-203 (244)
167 PRK09183 transposase/IS protei 97.1 0.0014 3E-08 64.5 7.6 100 197-315 103-205 (259)
168 COG2607 Predicted ATPase (AAA+ 97.1 0.004 8.8E-08 58.6 10.0 121 167-315 58-182 (287)
169 PRK06921 hypothetical protein; 97.1 0.0021 4.6E-08 63.5 8.7 38 196-235 117-154 (266)
170 cd01120 RecA-like_NTPases RecA 97.1 0.0024 5.3E-08 57.7 8.6 40 198-240 1-40 (165)
171 TIGR02237 recomb_radB DNA repa 97.1 0.002 4.4E-08 61.3 8.2 48 195-246 11-58 (209)
172 KOG0741 AAA+-type ATPase [Post 97.1 0.015 3.3E-07 60.6 14.8 145 194-369 536-704 (744)
173 cd01123 Rad51_DMC1_radA Rad51_ 97.0 0.0023 4.9E-08 62.2 8.4 50 195-244 18-70 (235)
174 PRK09361 radB DNA repair and r 97.0 0.0027 5.9E-08 61.3 8.9 46 195-244 22-67 (225)
175 TIGR01243 CDC48 AAA family ATP 97.0 0.0052 1.1E-07 70.0 12.3 179 169-373 178-381 (733)
176 CHL00195 ycf46 Ycf46; Provisio 97.0 0.0098 2.1E-07 63.7 13.4 159 169-348 228-407 (489)
177 PF00158 Sigma54_activat: Sigm 97.0 0.0027 5.8E-08 58.1 7.8 132 171-316 1-144 (168)
178 PRK11889 flhF flagellar biosyn 97.0 0.0091 2E-07 61.2 12.2 103 195-300 240-346 (436)
179 COG1223 Predicted ATPase (AAA+ 97.0 0.0082 1.8E-07 57.1 10.9 156 169-346 121-297 (368)
180 PF13207 AAA_17: AAA domain; P 97.0 0.00058 1.2E-08 58.8 3.1 23 198-220 1-23 (121)
181 PF07728 AAA_5: AAA domain (dy 96.9 0.00049 1.1E-08 60.9 2.3 87 199-300 2-89 (139)
182 PRK11034 clpA ATP-dependent Cl 96.9 0.0037 7.9E-08 70.5 9.7 121 170-302 459-583 (758)
183 PF14532 Sigma54_activ_2: Sigm 96.9 0.00069 1.5E-08 59.9 3.1 109 172-316 1-110 (138)
184 TIGR01243 CDC48 AAA family ATP 96.9 0.019 4.1E-07 65.5 15.5 179 169-373 453-657 (733)
185 cd01393 recA_like RecA is a b 96.9 0.0087 1.9E-07 57.7 11.1 91 195-286 18-124 (226)
186 COG0542 clpA ATP-binding subun 96.9 0.0034 7.5E-08 69.6 9.0 156 169-345 170-345 (786)
187 cd00983 recA RecA is a bacter 96.9 0.0028 6E-08 63.9 7.7 84 195-286 54-143 (325)
188 PF08423 Rad51: Rad51; InterP 96.9 0.002 4.3E-08 63.3 6.5 56 196-252 38-96 (256)
189 PRK06696 uridine kinase; Valid 96.9 0.0014 3.1E-08 63.1 5.1 45 174-221 3-47 (223)
190 TIGR02012 tigrfam_recA protein 96.9 0.0032 7E-08 63.4 7.7 84 195-286 54-143 (321)
191 PRK13695 putative NTPase; Prov 96.8 0.0019 4.1E-08 59.6 5.7 25 198-222 2-26 (174)
192 cd01394 radB RadB. The archaea 96.8 0.0058 1.3E-07 58.6 9.2 43 195-240 18-60 (218)
193 COG1222 RPT1 ATP-dependent 26S 96.8 0.048 1E-06 54.6 15.4 176 171-373 153-357 (406)
194 PRK06835 DNA replication prote 96.8 0.0018 3.9E-08 65.8 5.6 102 197-315 184-288 (329)
195 PRK09354 recA recombinase A; P 96.8 0.0039 8.5E-08 63.3 7.8 84 195-286 59-148 (349)
196 TIGR03499 FlhF flagellar biosy 96.8 0.0062 1.3E-07 60.8 9.1 87 195-285 193-281 (282)
197 PRK05541 adenylylsulfate kinas 96.8 0.0022 4.8E-08 59.3 5.5 36 195-233 6-41 (176)
198 PF13671 AAA_33: AAA domain; P 96.8 0.0055 1.2E-07 54.3 7.9 22 198-219 1-22 (143)
199 TIGR02238 recomb_DMC1 meiotic 96.8 0.0062 1.3E-07 61.5 9.1 59 195-254 95-156 (313)
200 cd03247 ABCC_cytochrome_bd The 96.8 0.011 2.4E-07 54.7 10.1 117 197-320 29-161 (178)
201 KOG2228 Origin recognition com 96.7 0.018 4E-07 56.9 11.5 173 169-346 24-219 (408)
202 PTZ00494 tuzin-like protein; P 96.7 0.2 4.4E-06 51.8 19.1 171 163-346 365-544 (664)
203 cd03214 ABC_Iron-Siderophores_ 96.7 0.014 3.1E-07 54.0 10.5 119 197-320 26-162 (180)
204 PF13604 AAA_30: AAA domain; P 96.7 0.0026 5.6E-08 59.9 5.3 106 197-315 19-130 (196)
205 cd03228 ABCC_MRP_Like The MRP 96.6 0.012 2.7E-07 54.0 9.5 117 197-321 29-160 (171)
206 cd03223 ABCD_peroxisomal_ALDP 96.6 0.024 5.1E-07 51.8 11.1 116 197-319 28-151 (166)
207 PF00448 SRP54: SRP54-type pro 96.6 0.0098 2.1E-07 55.9 8.6 88 196-286 1-93 (196)
208 COG1484 DnaC DNA replication p 96.6 0.0063 1.4E-07 59.7 7.6 81 196-294 105-185 (254)
209 PRK15455 PrkA family serine pr 96.6 0.0015 3.3E-08 69.7 3.3 52 170-221 77-128 (644)
210 KOG2004 Mitochondrial ATP-depe 96.6 0.026 5.6E-07 61.2 12.3 164 168-346 410-596 (906)
211 TIGR01817 nifA Nif-specific re 96.6 0.016 3.6E-07 63.5 11.4 134 168-315 195-340 (534)
212 cd01133 F1-ATPase_beta F1 ATP 96.6 0.012 2.7E-07 57.6 9.2 88 196-285 69-172 (274)
213 PRK14722 flhF flagellar biosyn 96.5 0.02 4.3E-07 59.0 11.1 89 196-287 137-226 (374)
214 PRK06067 flagellar accessory p 96.5 0.017 3.7E-07 56.1 10.2 86 195-286 24-130 (234)
215 cd01125 repA Hexameric Replica 96.5 0.025 5.4E-07 55.1 11.3 144 198-341 3-199 (239)
216 cd03238 ABC_UvrA The excision 96.5 0.014 3E-07 53.8 8.9 114 197-320 22-153 (176)
217 TIGR02239 recomb_RAD51 DNA rep 96.5 0.011 2.5E-07 59.8 9.2 58 195-253 95-155 (316)
218 PRK04301 radA DNA repair and r 96.5 0.014 3.1E-07 59.4 9.9 58 195-253 101-161 (317)
219 PRK00771 signal recognition pa 96.5 0.022 4.7E-07 60.2 11.5 87 195-285 94-184 (437)
220 PRK05800 cobU adenosylcobinami 96.5 0.0028 6.1E-08 58.1 4.3 80 198-285 3-85 (170)
221 TIGR02974 phageshock_pspF psp 96.5 0.017 3.7E-07 59.0 10.4 131 171-315 1-143 (329)
222 PRK05703 flhF flagellar biosyn 96.5 0.03 6.4E-07 59.2 12.3 85 197-285 222-308 (424)
223 cd03221 ABCF_EF-3 ABCF_EF-3 E 96.5 0.019 4.2E-07 51.0 9.4 104 197-320 27-131 (144)
224 KOG0733 Nuclear AAA ATPase (VC 96.5 0.0073 1.6E-07 64.1 7.4 97 169-286 190-292 (802)
225 PRK11608 pspF phage shock prot 96.5 0.011 2.3E-07 60.5 8.6 134 170-316 7-151 (326)
226 COG0466 Lon ATP-dependent Lon 96.4 0.0023 5E-08 69.2 3.6 164 168-347 322-509 (782)
227 COG1136 SalX ABC-type antimicr 96.4 0.03 6.6E-07 53.2 10.8 61 263-323 147-210 (226)
228 PLN03187 meiotic recombination 96.4 0.025 5.4E-07 57.8 10.9 59 195-254 125-186 (344)
229 cd00561 CobA_CobO_BtuR ATP:cor 96.4 0.0094 2E-07 53.6 6.8 117 197-317 3-139 (159)
230 PLN03186 DNA repair protein RA 96.4 0.023 5E-07 58.1 10.4 59 195-254 122-183 (342)
231 cd03216 ABC_Carb_Monos_I This 96.4 0.011 2.4E-07 53.9 7.4 116 197-320 27-146 (163)
232 PRK15429 formate hydrogenlyase 96.4 0.015 3.3E-07 65.8 10.1 135 169-316 376-521 (686)
233 cd02025 PanK Pantothenate kina 96.4 0.013 2.9E-07 56.1 8.2 24 198-221 1-24 (220)
234 cd03115 SRP The signal recogni 96.4 0.026 5.5E-07 51.9 9.8 25 198-222 2-26 (173)
235 KOG0735 AAA+-type ATPase [Post 96.4 0.014 3.1E-07 63.0 8.8 71 195-286 430-504 (952)
236 PRK10867 signal recognition pa 96.4 0.023 5E-07 59.8 10.4 28 195-222 99-126 (433)
237 PRK14974 cell division protein 96.3 0.027 5.8E-07 57.4 10.5 99 195-297 139-245 (336)
238 PRK12723 flagellar biosynthesi 96.3 0.017 3.7E-07 60.0 9.2 91 195-287 173-265 (388)
239 PRK12727 flagellar biosynthesi 96.3 0.018 3.9E-07 61.4 9.4 89 195-286 349-438 (559)
240 COG1121 ZnuC ABC-type Mn/Zn tr 96.3 0.038 8.3E-07 53.4 10.9 122 197-320 31-203 (254)
241 COG1875 NYN ribonuclease and A 96.3 0.02 4.3E-07 57.3 9.0 132 172-315 227-387 (436)
242 PLN00020 ribulose bisphosphate 96.3 0.0059 1.3E-07 61.8 5.3 29 194-222 146-174 (413)
243 cd03222 ABC_RNaseL_inhibitor T 96.3 0.02 4.3E-07 52.8 8.5 102 197-320 26-136 (177)
244 PF00485 PRK: Phosphoribulokin 96.3 0.017 3.7E-07 54.3 8.3 80 198-280 1-87 (194)
245 TIGR00959 ffh signal recogniti 96.3 0.029 6.4E-07 59.0 10.7 90 195-286 98-192 (428)
246 COG0468 RecA RecA/RadA recombi 96.3 0.017 3.8E-07 56.8 8.4 89 194-285 58-150 (279)
247 TIGR00554 panK_bact pantothena 96.3 0.024 5.1E-07 56.5 9.5 82 194-276 60-141 (290)
248 TIGR02236 recomb_radA DNA repa 96.3 0.028 6.2E-07 57.0 10.4 58 195-253 94-154 (310)
249 COG1618 Predicted nucleotide k 96.3 0.0043 9.4E-08 54.8 3.7 29 196-224 5-33 (179)
250 TIGR01359 UMP_CMP_kin_fam UMP- 96.3 0.014 3.1E-07 54.1 7.5 23 198-220 1-23 (183)
251 PRK07667 uridine kinase; Provi 96.2 0.0063 1.4E-07 57.1 5.1 40 178-221 3-42 (193)
252 PRK07132 DNA polymerase III su 96.2 0.22 4.8E-06 49.9 16.3 134 195-345 17-161 (299)
253 COG4608 AppF ABC-type oligopep 96.2 0.02 4.3E-07 55.4 8.4 123 197-323 40-177 (268)
254 PTZ00035 Rad51 protein; Provis 96.2 0.043 9.4E-07 56.1 11.4 58 195-253 117-177 (337)
255 PRK09270 nucleoside triphospha 96.2 0.025 5.3E-07 54.7 9.2 29 194-222 31-59 (229)
256 PRK05439 pantothenate kinase; 96.2 0.027 5.8E-07 56.5 9.6 82 194-277 84-166 (311)
257 PRK12724 flagellar biosynthesi 96.2 0.026 5.7E-07 58.6 9.7 26 195-220 222-247 (432)
258 TIGR02858 spore_III_AA stage I 96.2 0.072 1.6E-06 52.6 12.5 127 177-319 97-232 (270)
259 KOG2035 Replication factor C, 96.2 0.025 5.5E-07 54.4 8.7 200 171-380 15-229 (351)
260 PTZ00301 uridine kinase; Provi 96.2 0.0096 2.1E-07 56.5 5.9 25 196-220 3-27 (210)
261 PTZ00088 adenylate kinase 1; P 96.2 0.0042 9.1E-08 59.8 3.5 23 198-220 8-30 (229)
262 PF13238 AAA_18: AAA domain; P 96.2 0.0037 8.1E-08 54.1 2.9 22 199-220 1-22 (129)
263 PHA02244 ATPase-like protein 96.2 0.045 9.7E-07 55.9 10.8 36 177-220 108-143 (383)
264 cd03246 ABCC_Protease_Secretio 96.1 0.027 5.9E-07 51.8 8.7 116 197-320 29-160 (173)
265 PRK05022 anaerobic nitric oxid 96.1 0.023 5E-07 61.9 9.5 136 168-316 186-332 (509)
266 PRK10733 hflB ATP-dependent me 96.1 0.059 1.3E-06 60.3 12.8 130 197-347 186-336 (644)
267 cd03230 ABC_DR_subfamily_A Thi 96.1 0.019 4.2E-07 52.8 7.6 117 197-320 27-159 (173)
268 KOG0731 AAA+-type ATPase conta 96.1 0.12 2.7E-06 57.3 14.8 183 169-376 311-521 (774)
269 PF03308 ArgK: ArgK protein; 96.1 0.011 2.3E-07 56.9 5.9 65 177-246 14-78 (266)
270 cd00544 CobU Adenosylcobinamid 96.1 0.014 3.1E-07 53.3 6.6 79 199-285 2-82 (169)
271 cd01131 PilT Pilus retraction 96.1 0.0084 1.8E-07 56.6 5.2 111 197-319 2-112 (198)
272 KOG1051 Chaperone HSP104 and r 96.1 0.04 8.6E-07 62.3 11.0 120 170-301 563-685 (898)
273 cd01122 GP4d_helicase GP4d_hel 96.1 0.063 1.4E-06 53.3 11.7 52 197-252 31-82 (271)
274 KOG0734 AAA+-type ATPase conta 96.1 0.034 7.5E-07 58.2 9.6 54 169-222 304-363 (752)
275 TIGR03877 thermo_KaiC_1 KaiC d 96.1 0.049 1.1E-06 53.0 10.4 41 195-238 20-60 (237)
276 COG1126 GlnQ ABC-type polar am 96.0 0.054 1.2E-06 50.5 9.7 122 197-322 29-202 (240)
277 TIGR01650 PD_CobS cobaltochela 96.0 0.099 2.1E-06 52.7 12.4 44 170-221 46-89 (327)
278 PF12775 AAA_7: P-loop contain 96.0 0.0046 9.9E-08 61.3 3.0 91 178-288 22-112 (272)
279 PRK08233 hypothetical protein; 96.0 0.0056 1.2E-07 56.7 3.5 25 196-220 3-27 (182)
280 COG0563 Adk Adenylate kinase a 96.0 0.0091 2E-07 55.1 4.7 24 198-221 2-25 (178)
281 PF01583 APS_kinase: Adenylyls 96.0 0.0076 1.6E-07 53.9 3.9 28 196-223 2-29 (156)
282 PRK12726 flagellar biosynthesi 96.0 0.062 1.3E-06 55.1 10.8 90 195-287 205-296 (407)
283 PRK05480 uridine/cytidine kina 96.0 0.0064 1.4E-07 57.9 3.7 27 194-220 4-30 (209)
284 PRK06217 hypothetical protein; 96.0 0.012 2.7E-07 54.7 5.5 35 198-232 3-37 (183)
285 KOG0733 Nuclear AAA ATPase (VC 95.9 0.12 2.6E-06 55.3 13.0 131 196-347 545-693 (802)
286 cd02027 APSK Adenosine 5'-phos 95.9 0.015 3.4E-07 52.0 5.8 24 198-221 1-24 (149)
287 cd03217 ABC_FeS_Assembly ABC-t 95.9 0.035 7.6E-07 52.4 8.5 23 197-219 27-49 (200)
288 PF13481 AAA_25: AAA domain; P 95.9 0.053 1.2E-06 50.7 9.8 43 197-239 33-82 (193)
289 cd02019 NK Nucleoside/nucleoti 95.9 0.0059 1.3E-07 46.7 2.6 23 198-220 1-23 (69)
290 PRK06762 hypothetical protein; 95.9 0.0065 1.4E-07 55.5 3.2 24 197-220 3-26 (166)
291 cd03229 ABC_Class3 This class 95.9 0.028 6E-07 52.0 7.5 24 197-220 27-50 (178)
292 TIGR00235 udk uridine kinase. 95.9 0.0077 1.7E-07 57.3 3.8 26 195-220 5-30 (207)
293 COG0396 sufC Cysteine desulfur 95.9 0.082 1.8E-06 49.8 10.3 25 197-221 31-55 (251)
294 COG1703 ArgK Putative periplas 95.9 0.01 2.3E-07 57.8 4.6 65 179-248 38-102 (323)
295 TIGR00708 cobA cob(I)alamin ad 95.9 0.044 9.6E-07 49.9 8.4 118 197-316 6-140 (173)
296 cd01121 Sms Sms (bacterial rad 95.9 0.051 1.1E-06 56.3 10.0 83 195-286 81-168 (372)
297 PRK05917 DNA polymerase III su 95.8 0.12 2.6E-06 51.3 12.1 131 178-333 6-154 (290)
298 COG4618 ArpD ABC-type protease 95.8 0.073 1.6E-06 55.8 10.7 24 197-220 363-386 (580)
299 COG0572 Udk Uridine kinase [Nu 95.8 0.016 3.4E-07 54.5 5.5 78 194-277 6-85 (218)
300 TIGR03878 thermo_KaiC_2 KaiC d 95.8 0.029 6.4E-07 55.3 7.6 41 195-238 35-75 (259)
301 cd03281 ABC_MSH5_euk MutS5 hom 95.8 0.014 3.1E-07 55.6 5.2 23 196-218 29-51 (213)
302 PRK13948 shikimate kinase; Pro 95.8 0.098 2.1E-06 48.4 10.6 26 195-220 9-34 (182)
303 COG1102 Cmk Cytidylate kinase 95.7 0.022 4.7E-07 50.5 5.7 44 198-255 2-45 (179)
304 PF07724 AAA_2: AAA domain (Cd 95.7 0.0078 1.7E-07 55.2 3.1 41 196-238 3-43 (171)
305 cd03233 ABC_PDR_domain1 The pl 95.7 0.11 2.4E-06 49.0 11.1 25 197-221 34-58 (202)
306 PRK09519 recA DNA recombinatio 95.7 0.032 7E-07 62.5 8.3 84 195-286 59-148 (790)
307 TIGR00390 hslU ATP-dependent p 95.7 0.03 6.5E-07 58.0 7.5 54 169-222 12-73 (441)
308 PRK08533 flagellar accessory p 95.7 0.065 1.4E-06 51.8 9.6 48 196-248 24-71 (230)
309 COG0464 SpoVK ATPases of the A 95.7 0.086 1.9E-06 57.3 11.6 133 194-347 274-424 (494)
310 KOG2170 ATPase of the AAA+ sup 95.7 0.049 1.1E-06 53.2 8.4 112 170-301 83-203 (344)
311 PRK06002 fliI flagellum-specif 95.7 0.055 1.2E-06 56.9 9.5 86 196-285 165-263 (450)
312 PRK06547 hypothetical protein; 95.7 0.01 2.2E-07 54.5 3.6 28 194-221 13-40 (172)
313 PF10236 DAP3: Mitochondrial r 95.7 0.27 5.8E-06 49.8 14.2 49 327-376 258-306 (309)
314 PF08298 AAA_PrkA: PrkA AAA do 95.7 0.013 2.9E-07 59.0 4.6 54 168-221 60-113 (358)
315 COG0714 MoxR-like ATPases [Gen 95.7 0.024 5.2E-07 58.1 6.7 109 170-300 25-136 (329)
316 PF00006 ATP-synt_ab: ATP synt 95.7 0.038 8.1E-07 52.6 7.4 84 197-285 16-114 (215)
317 TIGR00064 ftsY signal recognit 95.6 0.072 1.6E-06 52.8 9.8 88 195-286 71-164 (272)
318 cd03369 ABCC_NFT1 Domain 2 of 95.6 0.16 3.5E-06 48.1 11.9 24 197-220 35-58 (207)
319 TIGR01360 aden_kin_iso1 adenyl 95.6 0.0088 1.9E-07 55.7 3.1 26 195-220 2-27 (188)
320 PF06745 KaiC: KaiC; InterPro 95.6 0.022 4.8E-07 54.9 6.0 86 195-285 18-124 (226)
321 PF00910 RNA_helicase: RNA hel 95.6 0.0073 1.6E-07 50.7 2.2 23 199-221 1-23 (107)
322 PRK14527 adenylate kinase; Pro 95.6 0.016 3.5E-07 54.2 4.8 27 195-221 5-31 (191)
323 PF00154 RecA: recA bacterial 95.6 0.04 8.6E-07 55.5 7.7 84 195-286 52-141 (322)
324 KOG0739 AAA+-type ATPase [Post 95.6 1.9 4.1E-05 42.4 18.5 95 170-286 134-235 (439)
325 PF08433 KTI12: Chromatin asso 95.6 0.022 4.7E-07 56.3 5.7 26 197-222 2-27 (270)
326 cd03244 ABCC_MRP_domain2 Domai 95.6 0.12 2.7E-06 49.5 11.0 24 197-220 31-54 (221)
327 COG1066 Sms Predicted ATP-depe 95.6 0.036 7.8E-07 56.5 7.3 82 196-287 93-179 (456)
328 TIGR03575 selen_PSTK_euk L-ser 95.6 0.044 9.6E-07 55.7 8.0 23 199-221 2-24 (340)
329 PRK03839 putative kinase; Prov 95.6 0.0093 2E-07 55.3 3.0 24 198-221 2-25 (180)
330 TIGR03522 GldA_ABC_ATP gliding 95.6 0.12 2.6E-06 52.2 11.3 24 197-220 29-52 (301)
331 PRK03846 adenylylsulfate kinas 95.6 0.028 6E-07 53.0 6.2 26 195-220 23-48 (198)
332 PF03205 MobB: Molybdopterin g 95.5 0.018 4E-07 50.8 4.5 39 197-237 1-39 (140)
333 cd00267 ABC_ATPase ABC (ATP-bi 95.5 0.037 8.1E-07 49.9 6.7 118 197-321 26-145 (157)
334 PRK04328 hypothetical protein; 95.5 0.066 1.4E-06 52.4 8.9 42 195-239 22-63 (249)
335 TIGR01425 SRP54_euk signal rec 95.5 0.1 2.3E-06 54.7 10.7 28 195-222 99-126 (429)
336 PRK09580 sufC cysteine desulfu 95.5 0.11 2.5E-06 50.7 10.5 23 197-219 28-50 (248)
337 cd03215 ABC_Carb_Monos_II This 95.5 0.12 2.6E-06 47.9 10.2 25 197-221 27-51 (182)
338 PRK05201 hslU ATP-dependent pr 95.5 0.033 7.1E-07 57.8 6.8 54 169-222 15-76 (443)
339 PRK14723 flhF flagellar biosyn 95.5 0.11 2.3E-06 58.3 11.1 25 196-220 185-209 (767)
340 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 95.5 0.12 2.7E-06 49.7 10.4 24 197-220 49-72 (224)
341 PRK14721 flhF flagellar biosyn 95.5 0.081 1.8E-06 55.4 9.7 88 195-285 190-278 (420)
342 PF03969 AFG1_ATPase: AFG1-lik 95.5 0.055 1.2E-06 55.8 8.4 106 195-316 61-167 (362)
343 TIGR00150 HI0065_YjeE ATPase, 95.4 0.022 4.8E-07 49.5 4.7 43 176-222 6-48 (133)
344 PRK08972 fliI flagellum-specif 95.4 0.057 1.2E-06 56.5 8.5 84 197-285 163-261 (444)
345 COG4240 Predicted kinase [Gene 95.4 0.089 1.9E-06 49.3 8.7 83 194-278 48-135 (300)
346 COG1428 Deoxynucleoside kinase 95.4 0.011 2.4E-07 54.8 2.9 27 196-222 4-30 (216)
347 cd03232 ABC_PDR_domain2 The pl 95.4 0.085 1.8E-06 49.4 9.0 23 197-219 34-56 (192)
348 cd01135 V_A-ATPase_B V/A-type 95.4 0.095 2.1E-06 51.4 9.4 88 197-285 70-175 (276)
349 cd03251 ABCC_MsbA MsbA is an e 95.4 0.2 4.4E-06 48.4 11.9 24 197-220 29-52 (234)
350 PRK10820 DNA-binding transcrip 95.4 0.047 1E-06 59.5 8.0 134 169-316 204-349 (520)
351 cd03254 ABCC_Glucan_exporter_l 95.4 0.14 3.1E-06 49.3 10.7 24 197-220 30-53 (229)
352 PRK06995 flhF flagellar biosyn 95.3 0.12 2.5E-06 55.2 10.5 88 196-286 256-344 (484)
353 cd03245 ABCC_bacteriocin_expor 95.3 0.15 3.3E-06 48.8 10.6 24 197-220 31-54 (220)
354 cd03250 ABCC_MRP_domain1 Domai 95.3 0.26 5.6E-06 46.6 12.1 25 197-221 32-56 (204)
355 PHA00729 NTP-binding motif con 95.3 0.017 3.7E-07 54.9 3.8 26 195-220 16-41 (226)
356 PRK00131 aroK shikimate kinase 95.3 0.014 3E-07 53.6 3.1 25 196-220 4-28 (175)
357 TIGR01069 mutS2 MutS2 family p 95.3 0.012 2.7E-07 66.7 3.3 24 196-219 322-345 (771)
358 cd03282 ABC_MSH4_euk MutS4 hom 95.3 0.019 4.1E-07 54.3 4.1 119 197-323 30-158 (204)
359 PRK04040 adenylate kinase; Pro 95.3 0.015 3.2E-07 54.3 3.3 24 197-220 3-26 (188)
360 PRK09544 znuC high-affinity zi 95.3 0.1 2.2E-06 51.3 9.3 24 197-220 31-54 (251)
361 TIGR00382 clpX endopeptidase C 95.2 0.11 2.3E-06 54.5 9.8 52 169-220 77-140 (413)
362 PRK10751 molybdopterin-guanine 95.2 0.018 3.8E-07 52.6 3.5 29 195-223 5-33 (173)
363 KOG1532 GTPase XAB1, interacts 95.2 0.018 3.8E-07 55.3 3.6 63 193-256 16-87 (366)
364 PRK00625 shikimate kinase; Pro 95.2 0.014 2.9E-07 53.7 2.8 24 198-221 2-25 (173)
365 TIGR02322 phosphon_PhnN phosph 95.2 0.015 3.2E-07 53.8 3.1 24 197-220 2-25 (179)
366 cd02023 UMPK Uridine monophosp 95.2 0.012 2.7E-07 55.4 2.6 23 198-220 1-23 (198)
367 PRK00279 adk adenylate kinase; 95.2 0.031 6.8E-07 53.4 5.4 23 198-220 2-24 (215)
368 COG0529 CysC Adenylylsulfate k 95.2 0.026 5.7E-07 50.8 4.4 30 195-224 22-51 (197)
369 KOG0730 AAA+-type ATPase [Post 95.2 0.43 9.4E-06 51.7 14.1 155 173-348 438-617 (693)
370 PRK08149 ATP synthase SpaL; Va 95.2 0.1 2.3E-06 54.7 9.5 85 196-285 151-250 (428)
371 PRK00889 adenylylsulfate kinas 95.2 0.019 4.1E-07 52.9 3.7 27 195-221 3-29 (175)
372 TIGR02329 propionate_PrpR prop 95.2 0.062 1.3E-06 58.3 8.1 134 169-316 212-358 (526)
373 cd01428 ADK Adenylate kinase ( 95.1 0.066 1.4E-06 50.1 7.3 22 199-220 2-23 (194)
374 COG1120 FepC ABC-type cobalami 95.1 0.13 2.8E-06 50.0 9.3 26 196-221 28-53 (258)
375 PRK12597 F0F1 ATP synthase sub 95.1 0.068 1.5E-06 56.6 8.0 88 196-285 143-246 (461)
376 PRK11823 DNA repair protein Ra 95.1 0.13 2.8E-06 54.9 10.2 83 195-286 79-166 (446)
377 PRK15453 phosphoribulokinase; 95.1 0.11 2.5E-06 51.0 8.9 78 195-275 4-89 (290)
378 cd02021 GntK Gluconate kinase 95.1 0.015 3.2E-07 52.1 2.6 22 198-219 1-22 (150)
379 PRK11160 cysteine/glutathione 95.1 0.19 4E-06 55.8 11.9 26 196-221 366-391 (574)
380 PF13479 AAA_24: AAA domain 95.1 0.076 1.6E-06 50.7 7.6 20 197-216 4-23 (213)
381 TIGR02868 CydC thiol reductant 95.1 0.13 2.7E-06 56.6 10.4 26 196-221 361-386 (529)
382 TIGR03881 KaiC_arch_4 KaiC dom 95.1 0.19 4.1E-06 48.5 10.4 41 195-238 19-59 (229)
383 cd00227 CPT Chloramphenicol (C 95.0 0.017 3.7E-07 53.3 2.9 24 197-220 3-26 (175)
384 PRK06731 flhF flagellar biosyn 95.0 0.12 2.7E-06 50.9 9.1 100 197-299 76-179 (270)
385 COG0194 Gmk Guanylate kinase [ 95.0 0.026 5.5E-07 51.5 3.9 24 197-220 5-28 (191)
386 cd03300 ABC_PotA_N PotA is an 95.0 0.15 3.2E-06 49.4 9.6 25 197-221 27-51 (232)
387 COG1643 HrpA HrpA-like helicas 95.0 0.18 4E-06 57.2 11.5 131 175-316 52-205 (845)
388 cd03213 ABCG_EPDR ABCG transpo 95.0 0.15 3.2E-06 47.9 9.3 24 197-220 36-59 (194)
389 TIGR03498 FliI_clade3 flagella 95.0 0.11 2.3E-06 54.6 9.0 85 197-285 141-239 (418)
390 COG2401 ABC-type ATPase fused 95.0 0.039 8.4E-07 56.2 5.4 157 170-326 372-578 (593)
391 TIGR03263 guanyl_kin guanylate 95.0 0.019 4E-07 53.2 3.1 24 197-220 2-25 (180)
392 cd00984 DnaB_C DnaB helicase C 95.0 0.16 3.4E-06 49.4 9.7 52 196-251 13-64 (242)
393 PRK05922 type III secretion sy 95.0 0.15 3.3E-06 53.5 10.0 84 197-285 158-256 (434)
394 PRK09280 F0F1 ATP synthase sub 95.0 0.12 2.6E-06 54.6 9.3 88 196-285 144-247 (463)
395 cd01136 ATPase_flagellum-secre 95.0 0.15 3.3E-06 51.5 9.7 84 197-285 70-168 (326)
396 COG3640 CooC CO dehydrogenase 95.0 0.035 7.7E-07 52.3 4.7 42 198-241 2-43 (255)
397 cd02024 NRK1 Nicotinamide ribo 94.9 0.017 3.7E-07 53.6 2.6 23 198-220 1-23 (187)
398 PF03266 NTPase_1: NTPase; In 94.9 0.03 6.5E-07 51.2 4.1 23 199-221 2-24 (168)
399 PF03215 Rad17: Rad17 cell cyc 94.9 0.032 6.9E-07 60.3 4.8 59 171-235 21-79 (519)
400 PRK11388 DNA-binding transcrip 94.9 0.1 2.3E-06 58.6 9.2 131 169-315 325-466 (638)
401 PRK08927 fliI flagellum-specif 94.9 0.1 2.2E-06 54.9 8.3 85 196-285 158-257 (442)
402 TIGR00416 sms DNA repair prote 94.9 0.15 3.2E-06 54.5 9.8 83 195-286 93-180 (454)
403 PRK12678 transcription termina 94.9 0.035 7.6E-07 59.4 4.9 99 180-285 405-512 (672)
404 COG1936 Predicted nucleotide k 94.8 0.02 4.3E-07 51.4 2.6 20 198-217 2-21 (180)
405 cd02020 CMPK Cytidine monophos 94.8 0.018 3.9E-07 51.1 2.5 23 198-220 1-23 (147)
406 PRK10463 hydrogenase nickel in 94.8 0.086 1.9E-06 52.2 7.4 28 194-221 102-129 (290)
407 PTZ00185 ATPase alpha subunit; 94.8 0.18 3.8E-06 53.6 9.9 90 196-286 189-299 (574)
408 cd02028 UMPK_like Uridine mono 94.8 0.019 4.2E-07 53.1 2.7 24 198-221 1-24 (179)
409 PF06309 Torsin: Torsin; Inte 94.8 0.053 1.1E-06 46.3 5.0 42 176-220 36-77 (127)
410 PRK15424 propionate catabolism 94.8 0.1 2.2E-06 56.7 8.5 47 169-219 219-265 (538)
411 PRK07594 type III secretion sy 94.8 0.11 2.4E-06 54.5 8.4 85 196-285 155-254 (433)
412 PRK13537 nodulation ABC transp 94.8 0.24 5.1E-06 50.2 10.6 24 197-220 34-57 (306)
413 TIGR00455 apsK adenylylsulfate 94.8 0.13 2.8E-06 47.8 8.1 27 195-221 17-43 (184)
414 PRK10416 signal recognition pa 94.7 0.18 4E-06 51.1 9.7 28 195-222 113-140 (318)
415 COG1131 CcmA ABC-type multidru 94.7 0.29 6.4E-06 49.1 11.1 25 197-221 32-56 (293)
416 PRK06936 type III secretion sy 94.7 0.13 2.8E-06 54.0 8.7 85 196-285 162-261 (439)
417 PF08477 Miro: Miro-like prote 94.7 0.026 5.6E-07 48.1 3.0 23 199-221 2-24 (119)
418 PF13245 AAA_19: Part of AAA d 94.7 0.055 1.2E-06 42.1 4.5 22 197-218 11-32 (76)
419 PRK00300 gmk guanylate kinase; 94.7 0.026 5.5E-07 53.5 3.2 25 196-220 5-29 (205)
420 PRK13949 shikimate kinase; Pro 94.7 0.024 5.1E-07 52.0 2.9 24 198-221 3-26 (169)
421 COG2842 Uncharacterized ATPase 94.7 0.29 6.2E-06 48.1 10.3 98 197-303 95-192 (297)
422 PRK05973 replicative DNA helic 94.7 0.074 1.6E-06 51.3 6.3 40 196-238 64-103 (237)
423 PRK13765 ATP-dependent proteas 94.7 0.054 1.2E-06 59.9 6.0 74 169-253 31-104 (637)
424 PRK10875 recD exonuclease V su 94.7 0.16 3.5E-06 56.1 9.7 119 197-318 168-304 (615)
425 TIGR01351 adk adenylate kinase 94.7 0.043 9.3E-07 52.2 4.7 22 199-220 2-23 (210)
426 cd00071 GMPK Guanosine monopho 94.7 0.024 5.2E-07 50.0 2.7 23 198-220 1-23 (137)
427 PRK05986 cob(I)alamin adenolsy 94.6 0.092 2E-06 48.6 6.6 118 196-316 22-158 (191)
428 PRK14737 gmk guanylate kinase; 94.6 0.034 7.3E-07 51.8 3.8 26 195-220 3-28 (186)
429 PRK14530 adenylate kinase; Pro 94.6 0.024 5.2E-07 54.2 2.9 23 198-220 5-27 (215)
430 PF00625 Guanylate_kin: Guanyl 94.6 0.042 9E-07 51.1 4.4 36 197-235 3-38 (183)
431 COG1124 DppF ABC-type dipeptid 94.6 0.027 5.9E-07 53.4 3.1 24 197-220 34-57 (252)
432 COG2274 SunT ABC-type bacterio 94.6 0.27 5.8E-06 55.3 11.4 25 197-221 500-524 (709)
433 PRK13947 shikimate kinase; Pro 94.6 0.025 5.5E-07 51.8 2.9 24 198-221 3-26 (171)
434 PRK12339 2-phosphoglycerate ki 94.6 0.03 6.6E-07 52.5 3.4 25 196-220 3-27 (197)
435 TIGR02314 ABC_MetN D-methionin 94.6 0.2 4.3E-06 51.5 9.6 25 197-221 32-56 (343)
436 PRK13657 cyclic beta-1,2-gluca 94.6 0.26 5.7E-06 54.8 11.4 25 197-221 362-386 (588)
437 PRK10078 ribose 1,5-bisphospho 94.6 0.029 6.2E-07 52.3 3.2 24 197-220 3-26 (186)
438 PF07726 AAA_3: ATPase family 94.5 0.02 4.3E-07 49.1 1.8 23 199-221 2-24 (131)
439 PRK10923 glnG nitrogen regulat 94.5 0.11 2.3E-06 56.2 8.0 47 170-220 139-185 (469)
440 PRK06793 fliI flagellum-specif 94.5 0.15 3.3E-06 53.5 8.7 87 196-286 156-256 (432)
441 PRK14738 gmk guanylate kinase; 94.5 0.037 8.1E-07 52.5 3.9 26 194-219 11-36 (206)
442 TIGR01313 therm_gnt_kin carboh 94.5 0.023 5E-07 51.6 2.4 22 199-220 1-22 (163)
443 TIGR03496 FliI_clade1 flagella 94.5 0.16 3.5E-06 53.2 8.8 84 197-285 138-236 (411)
444 cd00820 PEPCK_HprK Phosphoenol 94.5 0.034 7.5E-07 46.3 3.1 21 197-217 16-36 (107)
445 TIGR01420 pilT_fam pilus retra 94.5 0.085 1.8E-06 54.3 6.7 110 197-318 123-232 (343)
446 PRK09099 type III secretion sy 94.5 0.16 3.5E-06 53.6 8.8 86 196-285 163-262 (441)
447 cd03285 ABC_MSH2_euk MutS2 hom 94.5 0.039 8.5E-07 53.0 3.9 120 195-322 29-159 (222)
448 TIGR02655 circ_KaiC circadian 94.5 0.1 2.2E-06 56.5 7.5 54 178-238 249-302 (484)
449 KOG0743 AAA+-type ATPase [Post 94.5 0.88 1.9E-05 47.3 13.7 24 197-220 236-259 (457)
450 TIGR00176 mobB molybdopterin-g 94.4 0.037 8E-07 49.9 3.5 34 198-233 1-34 (155)
451 PRK13975 thymidylate kinase; P 94.4 0.032 6.9E-07 52.4 3.2 25 197-221 3-27 (196)
452 PF05970 PIF1: PIF1-like helic 94.4 0.094 2E-06 54.5 6.9 28 195-222 21-48 (364)
453 cd01124 KaiC KaiC is a circadi 94.4 0.035 7.5E-07 51.6 3.4 38 198-238 1-38 (187)
454 TIGR03258 PhnT 2-aminoethylpho 94.4 0.25 5.5E-06 51.1 10.0 24 197-220 32-55 (362)
455 COG0467 RAD55 RecA-superfamily 94.4 0.046 1E-06 54.0 4.4 42 194-238 21-62 (260)
456 cd01132 F1_ATPase_alpha F1 ATP 94.4 0.16 3.4E-06 49.9 7.9 84 197-285 70-170 (274)
457 cd02029 PRK_like Phosphoribulo 94.4 0.15 3.2E-06 49.8 7.6 77 198-277 1-85 (277)
458 TIGR02788 VirB11 P-type DNA tr 94.4 0.059 1.3E-06 54.6 5.2 110 197-317 145-254 (308)
459 cd00464 SK Shikimate kinase (S 94.4 0.031 6.7E-07 50.1 2.9 22 199-220 2-23 (154)
460 TIGR01039 atpD ATP synthase, F 94.4 0.18 3.9E-06 53.1 8.8 88 196-285 143-246 (461)
461 COG1419 FlhF Flagellar GTP-bin 94.4 0.17 3.7E-06 52.0 8.4 88 196-286 203-291 (407)
462 PLN02200 adenylate kinase fami 94.4 0.036 7.8E-07 53.6 3.4 25 195-219 42-66 (234)
463 COG2019 AdkA Archaeal adenylat 94.4 0.039 8.6E-07 49.1 3.3 25 196-220 4-28 (189)
464 COG4181 Predicted ABC-type tra 94.3 0.94 2E-05 40.9 11.8 83 240-323 122-214 (228)
465 KOG0924 mRNA splicing factor A 94.3 0.32 6.9E-06 52.6 10.4 115 197-316 372-510 (1042)
466 PF13086 AAA_11: AAA domain; P 94.3 0.099 2.1E-06 50.2 6.5 52 198-250 19-75 (236)
467 PF03193 DUF258: Protein of un 94.3 0.058 1.3E-06 48.5 4.4 36 176-220 24-59 (161)
468 cd01134 V_A-ATPase_A V/A-type 94.3 0.44 9.6E-06 48.3 11.0 48 197-249 158-206 (369)
469 TIGR03305 alt_F1F0_F1_bet alte 94.3 0.17 3.8E-06 53.3 8.5 88 196-285 138-241 (449)
470 PRK11650 ugpC glycerol-3-phosp 94.3 0.24 5.2E-06 51.2 9.5 24 197-220 31-54 (356)
471 PRK00409 recombination and DNA 94.3 0.023 5.1E-07 64.7 2.2 121 195-322 326-456 (782)
472 smart00534 MUTSac ATPase domai 94.3 0.033 7.2E-07 51.9 2.9 21 198-218 1-21 (185)
473 COG5635 Predicted NTPase (NACH 94.3 0.055 1.2E-06 62.5 5.2 185 196-384 222-427 (824)
474 PRK09435 membrane ATPase/prote 94.2 0.1 2.2E-06 53.0 6.5 41 179-223 43-83 (332)
475 PRK05057 aroK shikimate kinase 94.2 0.035 7.7E-07 51.0 2.9 24 197-220 5-28 (172)
476 KOG0728 26S proteasome regulat 94.2 1 2.3E-05 42.9 12.5 156 170-346 147-331 (404)
477 KOG0735 AAA+-type ATPase [Post 94.2 1 2.2E-05 49.3 14.0 155 171-346 669-848 (952)
478 TIGR01818 ntrC nitrogen regula 94.2 0.27 5.8E-06 53.0 10.2 134 170-316 135-279 (463)
479 TIGR00958 3a01208 Conjugate Tr 94.2 0.51 1.1E-05 53.8 12.8 26 196-221 507-532 (711)
480 TIGR00764 lon_rel lon-related 94.2 0.095 2.1E-06 58.1 6.7 46 169-222 18-63 (608)
481 PRK07276 DNA polymerase III su 94.2 2.2 4.7E-05 42.6 15.6 69 275-344 103-173 (290)
482 PRK05688 fliI flagellum-specif 94.2 0.19 4.1E-06 53.1 8.4 84 197-285 169-267 (451)
483 TIGR00073 hypB hydrogenase acc 94.2 0.044 9.6E-07 52.1 3.5 27 194-220 20-46 (207)
484 PRK15064 ABC transporter ATP-b 94.1 0.38 8.3E-06 52.8 11.3 24 197-220 28-51 (530)
485 PRK13545 tagH teichoic acids e 94.1 0.4 8.6E-06 51.7 10.9 24 197-220 51-74 (549)
486 COG0488 Uup ATPase components 94.1 0.37 8.1E-06 52.2 10.9 133 197-332 349-511 (530)
487 TIGR01040 V-ATPase_V1_B V-type 94.1 0.21 4.6E-06 52.5 8.6 90 196-285 141-256 (466)
488 PF05659 RPW8: Arabidopsis bro 94.1 0.87 1.9E-05 40.4 11.3 109 3-138 6-115 (147)
489 TIGR03497 FliI_clade2 flagella 94.1 0.2 4.4E-06 52.5 8.5 85 196-285 137-236 (413)
490 TIGR00041 DTMP_kinase thymidyl 94.1 0.11 2.4E-06 48.7 6.1 27 197-223 4-30 (195)
491 COG4778 PhnL ABC-type phosphon 94.1 0.066 1.4E-06 47.9 4.1 35 197-235 38-72 (235)
492 PRK13409 putative ATPase RIL; 94.0 0.27 5.8E-06 54.6 9.8 134 197-331 366-528 (590)
493 PF03029 ATP_bind_1: Conserved 94.0 0.039 8.5E-07 53.5 2.9 23 201-223 1-23 (238)
494 PRK07196 fliI flagellum-specif 94.0 0.17 3.6E-06 53.3 7.7 86 195-285 154-254 (434)
495 PF06414 Zeta_toxin: Zeta toxi 94.0 0.087 1.9E-06 49.7 5.3 102 194-302 13-117 (199)
496 PRK14529 adenylate kinase; Pro 94.0 0.095 2.1E-06 50.1 5.4 24 199-222 3-26 (223)
497 cd04159 Arl10_like Arl10-like 94.0 0.33 7.3E-06 43.0 8.9 21 199-219 2-22 (159)
498 PF09848 DUF2075: Uncharacteri 94.0 0.2 4.3E-06 51.9 8.3 41 197-238 2-42 (352)
499 PRK06761 hypothetical protein; 94.0 0.064 1.4E-06 53.1 4.3 26 197-222 4-29 (282)
500 KOG0058 Peptide exporter, ABC 94.0 0.19 4.1E-06 55.1 8.1 23 197-219 495-517 (716)
No 1
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=100.00 E-value=1.3e-75 Score=652.12 Aligned_cols=550 Identities=28% Similarity=0.443 Sum_probs=443.1
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHhhchHhHHHH
Q 007817 7 LLSAFFQVLFDRLASRDLLNFVRQLQGGLDSELKKWENTLIMIQAVLCDAEEKQLTNKAVKIWLDDLRDLAYDAEDILDE 86 (588)
Q Consensus 7 ~~s~~~~~l~~~l~~~~~~~~~~~~~v~~~~~~~~L~~~l~~i~~~l~~a~~~~~~~~~v~~Wl~~lrd~ayd~eD~lD~ 86 (588)
++|..++++.+.+.. ++....++ ++.+..|++.|..++.+++|+++++.....+..|...+++++|++||.++.
T Consensus 4 ~~s~~~~~~~~~l~~----~~~~~~~~--~~~i~~Lk~~L~~l~~~l~d~~a~~~~~~~~~~~~e~~~~~~~~~e~~~~~ 77 (889)
T KOG4658|consen 4 CVSFGVEKLDQLLNR----ESECLDGK--DNYILELKENLKALQSALEDLDAKRDDLERRVNWEEDVGDLVYLAEDIIWL 77 (889)
T ss_pred EEEEehhhHHHHHHH----HHHHHhch--HHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444455555554432 22333455 678999999999999999999999988889999999999999999999999
Q ss_pred HHHHHHhhhhccccCCC---CCCcccccCCCCcchhhhHHHHHHHHHHHHHHHHHhhhhhcccccCCCCC--cccccccc
Q 007817 87 FATEALKHESMAENSNL---SPACFSYFNPSSLKFNIDTDSKIKSITTRLDEICAKRIVLGLQLIPGGTS--NAWERRLQ 161 (588)
Q Consensus 87 ~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~~i~~~~~~~~~~~~~~~~~--~~~~~~~~ 161 (588)
|.......+..+.-... ....| ...+++..+..+..+.+++-.+....+.++......... ..+....+
T Consensus 78 ~~v~~~~~~~~~~l~~~~~~~~~~c------~~~~~~~~~~~~~~~~~rv~~~l~~ve~l~~~~~~~~~~~~~~~~~~~e 151 (889)
T KOG4658|consen 78 FLVEEIERKANDLLSTRSVERQRLC------LCGFCSKNVSDSYKYGKRVSKVLREVESLGSKGVFEVVGESLDPREKVE 151 (889)
T ss_pred HHHHHHHHHHhHHhhhhHHHHHHHh------hhhhHhHhhhhhHhHHHHHHHHHHHHHHhccccceecccccccchhhcc
Confidence 99987665433211100 01100 014466777777777778877777777776543221111 11112233
Q ss_pred CCCCCCCCceeechhhHHHHHHHHhcCCCCCCCCeEEEEEEccCCCcHHHHHHHHHcccc-cccccccEEEEEEeCCccc
Q 007817 162 SSRVPTERAVYGRDEDKARMLEMVLSDDPTTDANFCVIPIVGMAGAGKTMLAREVYNDRA-VQNFKFDVKAWVSVSDDFD 240 (588)
Q Consensus 162 ~~~~~~~~~~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~-~~~~~f~~~~wv~v~~~~~ 240 (588)
+.+...... ||.+..++++.+.|.+++ ..+++|+||||+||||||++++|+.. ++. +|+.++||+||+.++
T Consensus 152 ~~~~~~~~~-VG~e~~~~kl~~~L~~d~------~~iv~i~GMGGvGKTTL~~qi~N~~~~v~~-~Fd~~iWV~VSk~f~ 223 (889)
T KOG4658|consen 152 TRPIQSESD-VGLETMLEKLWNRLMEDD------VGIVGIYGMGGVGKTTLARQIFNKFDEVGN-HFDGVIWVVVSKEFT 223 (889)
T ss_pred cCCCCcccc-ccHHHHHHHHHHHhccCC------CCEEEEECCCcccHHHHHHHHhcccchhcc-cCceEEEEEEccccc
Confidence 444444444 999999999999998764 28999999999999999999999998 777 999999999999999
Q ss_pred HHHHHHHHHHHhcCCCCCC--CCHHHHHHHHHHHhcCCceeEEeccccccChhHHHHhhcccCCCCCCcEEEEeecchhh
Q 007817 241 VLRISRALLESITSTNCDF--KTLNEVQVKLRIIVDGKKFLLVLDDVWNENYNLWEILKAPFMAGARNSKIIVTTCHSNV 318 (588)
Q Consensus 241 ~~~~~~~il~~l~~~~~~~--~~~~~l~~~l~~~l~~k~~LLVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTTR~~~v 318 (588)
...++.+|++.++...... .+.++++..+.+.|++|||||||||||+. ..|+.+..++|...+||+|++|||+..|
T Consensus 224 ~~~iq~~Il~~l~~~~~~~~~~~~~~~~~~i~~~L~~krfllvLDDIW~~--~dw~~I~~~~p~~~~g~KvvlTTRs~~V 301 (889)
T KOG4658|consen 224 TRKIQQTILERLGLLDEEWEDKEEDELASKLLNLLEGKRFLLVLDDIWEE--VDWDKIGVPFPSRENGSKVVLTTRSEEV 301 (889)
T ss_pred HHhHHHHHHHHhccCCcccchhhHHHHHHHHHHHhccCceEEEEeccccc--ccHHhcCCCCCCccCCeEEEEEeccHhh
Confidence 9999999999998755432 23468889999999999999999999987 4699999999999899999999999999
Q ss_pred hhh-ccccceeeCCCCCHHHHHHHHHHhhcCCCCCCCChhHHHHHHHHHHHhCCCchHHHHhhhhccCCCCHHHHHHHHh
Q 007817 319 ASM-MGSVEHYNLKLLSDEYCWSVFVKHAFERRDAGAHQFSKLFRKKIVAKCGGLPLAVSTLGGLLRTRHTEDAWEEIVS 397 (588)
Q Consensus 319 ~~~-~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~i~~~I~~~c~GlPLai~~~~~~L~~~~~~~~w~~~~~ 397 (588)
+.. ++....++++.|+++|||.||++.+|.... ...+..+.+|++|+++|+|+|||+.++|+.|+.+.+..+|.++.+
T Consensus 302 ~~~~m~~~~~~~v~~L~~~eaW~LF~~~v~~~~~-~~~~~i~~lak~v~~kC~GLPLAl~viG~~ma~K~t~~eW~~~~~ 380 (889)
T KOG4658|consen 302 CGRAMGVDYPIEVECLTPEEAWDLFQKKVGPNTL-GSHPDIEELAKEVAEKCGGLPLALNVLGGLLACKKTVQEWRRALN 380 (889)
T ss_pred hhccccCCccccccccCccccHHHHHHhhccccc-cccccHHHHHHHHHHHhCChHHHHHHHHHHhcCCCcHHHHHHHHc
Confidence 999 778889999999999999999999987533 344558999999999999999999999999999999999999998
Q ss_pred cccCC----CCC-cccHHHHHHHHhccCchhHHHHHhHhcccCCCceeehhHHHHHHHHcCCcccCCCCCCHHHHHHHHH
Q 007817 398 SKMWD----LPQ-QTDILAVLRLSYHYLPSHLKRCFTYCAIFPKNYEFEKNELVFLWMGEGMIQQSRTGKLLEDLGNEFF 472 (588)
Q Consensus 398 ~~~~~----~~~-~~~i~~~l~~sy~~L~~~~k~cf~~ls~Fp~~~~i~~~~Li~~W~aeg~i~~~~~~~~~e~~~~~~l 472 (588)
...+. .+. ++.+.++|.+||+.||+++|.||+|||+||+||.|+++.|+.+|+||||+.+...+.++++.|..|+
T Consensus 381 ~l~s~~~~~~~~~~~~i~~iLklSyd~L~~~lK~CFLycalFPED~~I~~e~Li~yWiaEGfi~~~~~~~~~~d~G~~~i 460 (889)
T KOG4658|consen 381 VLKSSLAADFSGMEESILPILKLSYDNLPEELKSCFLYCALFPEDYEIKKEKLIEYWIAEGFIDPLDGGETAEDVGYDYI 460 (889)
T ss_pred cccccccCCCCchhhhhHHhhhccHhhhhHHHHHHHHhhccCCcccccchHHHHHHHHhccCcCccccccchhcchHHHH
Confidence 76554 222 5689999999999999999999999999999999999999999999999998677889999999999
Q ss_pred HHHhhCCccccccC--CcCeEEEchhHHHHHHHHhc-----ccceEEecC-----cccccCCCCeeEEEEecCccCcccc
Q 007817 473 CNPLSRSLFQQSSR--DVRKFVMHDLVHDLAQLVSG-----ATSFWLEEA-----NKQLRTFERIRHFSYPCAWYEGKNK 540 (588)
Q Consensus 473 ~~L~~rsllq~~~~--~~~~~~mHdlv~d~a~~~~~-----~e~~~~~~~-----~~~~~~~~~~r~ls~~~~~~~~~~~ 540 (588)
.+|++++|++.... +..+|.|||+|||+|.++|+ ++.+++.++ ......+..+||++++++... .
T Consensus 461 ~~LV~~~Ll~~~~~~~~~~~~kmHDvvRe~al~ias~~~~~~e~~iv~~~~~~~~~~~~~~~~~~rr~s~~~~~~~---~ 537 (889)
T KOG4658|consen 461 EELVRASLLIEERDEGRKETVKMHDVVREMALWIASDFGKQEENQIVSDGVGLSEIPQVKSWNSVRRMSLMNNKIE---H 537 (889)
T ss_pred HHHHHHHHHhhcccccceeEEEeeHHHHHHHHHHhccccccccceEEECCcCccccccccchhheeEEEEeccchh---h
Confidence 99999999998652 45789999999999999999 666655543 111223467899999987432 2
Q ss_pred ccccCCCCCccEEEeccCCCCCccchhhHHHHHhhcCCCCcceEEecC
Q 007817 541 FHGLNKAPGLRTFLPLNARGLSTRNYITIMVLLDLLPKLKKLRVLLSK 588 (588)
Q Consensus 541 ~~~~~~~~~lrtl~~~~~~~~~~~~~~~~~~~~~~~~~~~~LrvLdLs 588 (588)
.....++++||||+++.+.. | ...++..||..|+.|||||||
T Consensus 538 ~~~~~~~~~L~tLll~~n~~-~-----l~~is~~ff~~m~~LrVLDLs 579 (889)
T KOG4658|consen 538 IAGSSENPKLRTLLLQRNSD-W-----LLEISGEFFRSLPLLRVLDLS 579 (889)
T ss_pred ccCCCCCCccceEEEeecch-h-----hhhcCHHHHhhCcceEEEECC
Confidence 33445788999999998641 1 245677889999999999997
No 2
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=100.00 E-value=3.4e-46 Score=376.05 Aligned_cols=276 Identities=36% Similarity=0.609 Sum_probs=223.6
Q ss_pred chhhHHHHHHHHhcCCCCCCCCeEEEEEEccCCCcHHHHHHHHHcccccccccccEEEEEEeCCcccHHHHHHHHHHHhc
Q 007817 174 RDEDKARMLEMVLSDDPTTDANFCVIPIVGMAGAGKTMLAREVYNDRAVQNFKFDVKAWVSVSDDFDVLRISRALLESIT 253 (588)
Q Consensus 174 R~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~il~~l~ 253 (588)
||.++++|.++|.... .+.++|+|+|+||+||||||.+++++...+. +|+.++|++++...+...++..|+.+++
T Consensus 1 re~~~~~l~~~L~~~~----~~~~~v~I~G~~G~GKT~LA~~~~~~~~~~~-~f~~v~wv~~~~~~~~~~~~~~i~~~l~ 75 (287)
T PF00931_consen 1 REKEIEKLKDWLLDNS----NEVRVVAIVGMGGIGKTTLARQVARDLRIKN-RFDGVIWVSLSKNPSLEQLLEQILRQLG 75 (287)
T ss_dssp -HHHHHHHHHHHHTTT----TSSEEEEEEESTTSSHHHHHHHHHCHHHHCC-CCTEEEEEEEES-SCCHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHhhCCC----CCeEEEEEEcCCcCCcceeeeeccccccccc-cccccccccccccccccccccccccccc
Confidence 7899999999998753 4779999999999999999999999877666 8999999999999999999999999998
Q ss_pred CCCC---CCCCHHHHHHHHHHHhcCCceeEEeccccccChhHHHHhhcccCCCCCCcEEEEeecchhhhhhccc-cceee
Q 007817 254 STNC---DFKTLNEVQVKLRIIVDGKKFLLVLDDVWNENYNLWEILKAPFMAGARNSKIIVTTCHSNVASMMGS-VEHYN 329 (588)
Q Consensus 254 ~~~~---~~~~~~~l~~~l~~~l~~k~~LLVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTTR~~~v~~~~~~-~~~~~ 329 (588)
.... ...+.++....+.+.|.++++||||||||+. ..|+.+...++....|++||||||+..++..++. ...++
T Consensus 76 ~~~~~~~~~~~~~~~~~~l~~~L~~~~~LlVlDdv~~~--~~~~~l~~~~~~~~~~~kilvTTR~~~v~~~~~~~~~~~~ 153 (287)
T PF00931_consen 76 EPDSSISDPKDIEELQDQLRELLKDKRCLLVLDDVWDE--EDLEELREPLPSFSSGSKILVTTRDRSVAGSLGGTDKVIE 153 (287)
T ss_dssp CC-STSSCCSSHHHHHHHHHHHHCCTSEEEEEEEE-SH--HHH-------HCHHSS-EEEEEESCGGGGTTHHSCEEEEE
T ss_pred ccccccccccccccccccchhhhccccceeeeeeeccc--cccccccccccccccccccccccccccccccccccccccc
Confidence 7743 4567888999999999999999999999875 4888888888777789999999999999887664 67899
Q ss_pred CCCCCHHHHHHHHHHhhcCCCCCCCChhHHHHHHHHHHHhCCCchHHHHhhhhccCCCCHHHHHHHHhcccCCCC----C
Q 007817 330 LKLLSDEYCWSVFVKHAFERRDAGAHQFSKLFRKKIVAKCGGLPLAVSTLGGLLRTRHTEDAWEEIVSSKMWDLP----Q 405 (588)
Q Consensus 330 l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~i~~~I~~~c~GlPLai~~~~~~L~~~~~~~~w~~~~~~~~~~~~----~ 405 (588)
+++|++++|++||.+.++... ....+....++++|+++|+|+||||+++|++|+.+.+..+|..+++....... .
T Consensus 154 l~~L~~~ea~~L~~~~~~~~~-~~~~~~~~~~~~~i~~~c~glPLal~~~a~~l~~~~~~~~w~~~~~~l~~~~~~~~~~ 232 (287)
T PF00931_consen 154 LEPLSEEEALELFKKRAGRKE-SESPEDLEDLAKEIVEKCGGLPLALKLIASYLRSKSTVDEWEEALEELENSLRESRDY 232 (287)
T ss_dssp CSS--HHHHHHHHHHHHTSHS-----TTSCTHHHHHHHHTTT-HHHHHHHHHHHHHHHSSSSHHHHHHHHHHCHTCSSGS
T ss_pred ccccccccccccccccccccc-cccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 999999999999999997654 12334455678899999999999999999999766566788888765433322 2
Q ss_pred cccHHHHHHHHhccCchhHHHHHhHhcccCCCceeehhHHHHHHHHcCCccc
Q 007817 406 QTDILAVLRLSYHYLPSHLKRCFTYCAIFPKNYEFEKNELVFLWMGEGMIQQ 457 (588)
Q Consensus 406 ~~~i~~~l~~sy~~L~~~~k~cf~~ls~Fp~~~~i~~~~Li~~W~aeg~i~~ 457 (588)
...+..++.+||+.||+++|.||+|||+||+++.|+++.|+++|++|||+..
T Consensus 233 ~~~~~~~l~~s~~~L~~~~~~~f~~L~~f~~~~~i~~~~li~lW~~e~~i~~ 284 (287)
T PF00931_consen 233 DRSVFSALELSYDSLPDELRRCFLYLSIFPEGVPIPRERLIRLWVAEGFISS 284 (287)
T ss_dssp CHHHHHHHHHHHHSSHTCCHHHHHHGGGSGTTS-EEHHHHHHHHTT-HHTC-
T ss_pred cccccccceechhcCCccHHHHHhhCcCCCCCceECHHHHHHHHHHCCCCcc
Confidence 4789999999999999999999999999999999999999999999999975
No 3
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=100.00 E-value=4e-40 Score=386.34 Aligned_cols=357 Identities=19% Similarity=0.288 Sum_probs=264.7
Q ss_pred CCCCceeechhhHHHHHHHHhcCCCCCCCCeEEEEEEccCCCcHHHHHHHHHcccccccccccEEEEEEe---CCc----
Q 007817 166 PTERAVYGRDEDKARMLEMVLSDDPTTDANFCVIPIVGMAGAGKTMLAREVYNDRAVQNFKFDVKAWVSV---SDD---- 238 (588)
Q Consensus 166 ~~~~~~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~wv~v---~~~---- 238 (588)
.+...+|||+..++++..+|.... ..+++|+|+||||+||||||+.+|+... . .|+..+|+.. +..
T Consensus 181 ~~~~~~vG~~~~l~~l~~lL~l~~----~~~~vvgI~G~gGiGKTTLA~~l~~~l~--~-~F~g~vfv~~~~v~~~~~~~ 253 (1153)
T PLN03210 181 NDFEDFVGIEDHIAKMSSLLHLES----EEVRMVGIWGSSGIGKTTIARALFSRLS--R-QFQSSVFIDRAFISKSMEIY 253 (1153)
T ss_pred cccccccchHHHHHHHHHHHcccc----CceEEEEEEcCCCCchHHHHHHHHHHHh--h-cCCeEEEeeccccccchhhc
Confidence 345679999999999999885432 4689999999999999999999999654 3 7888888742 111
Q ss_pred -------cc-HHHHHHHHHHHhcCCCC-CCCCHHHHHHHHHHHhcCCceeEEeccccccChhHHHHhhcccCCCCCCcEE
Q 007817 239 -------FD-VLRISRALLESITSTNC-DFKTLNEVQVKLRIIVDGKKFLLVLDDVWNENYNLWEILKAPFMAGARNSKI 309 (588)
Q Consensus 239 -------~~-~~~~~~~il~~l~~~~~-~~~~~~~l~~~l~~~l~~k~~LLVlDdv~~~~~~~~~~l~~~l~~~~~gs~i 309 (588)
.+ ...+..+++..+..... ..... ..+++.++++|+||||||||+. ..|+.+.......++||+|
T Consensus 254 ~~~~~~~~~~~~~l~~~~l~~il~~~~~~~~~~----~~~~~~L~~krvLLVLDdv~~~--~~l~~L~~~~~~~~~GsrI 327 (1153)
T PLN03210 254 SSANPDDYNMKLHLQRAFLSEILDKKDIKIYHL----GAMEERLKHRKVLIFIDDLDDQ--DVLDALAGQTQWFGSGSRI 327 (1153)
T ss_pred ccccccccchhHHHHHHHHHHHhCCCCcccCCH----HHHHHHHhCCeEEEEEeCCCCH--HHHHHHHhhCccCCCCcEE
Confidence 01 12344555555433221 11111 4567778999999999999764 5788887766666789999
Q ss_pred EEeecchhhhhhccccceeeCCCCCHHHHHHHHHHhhcCCCCCCCChhHHHHHHHHHHHhCCCchHHHHhhhhccCCCCH
Q 007817 310 IVTTCHSNVASMMGSVEHYNLKLLSDEYCWSVFVKHAFERRDAGAHQFSKLFRKKIVAKCGGLPLAVSTLGGLLRTRHTE 389 (588)
Q Consensus 310 lvTTR~~~v~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~i~~~I~~~c~GlPLai~~~~~~L~~~~~~ 389 (588)
|||||+..++...+..++|+++.|++++||+||+++||+... .+..+.+++++|+++|+|+||||+++|+.|+.+ +.
T Consensus 328 IiTTrd~~vl~~~~~~~~~~v~~l~~~ea~~LF~~~Af~~~~--~~~~~~~l~~~iv~~c~GLPLAl~vlgs~L~~k-~~ 404 (1153)
T PLN03210 328 IVITKDKHFLRAHGIDHIYEVCLPSNELALEMFCRSAFKKNS--PPDGFMELASEVALRAGNLPLGLNVLGSYLRGR-DK 404 (1153)
T ss_pred EEEeCcHHHHHhcCCCeEEEecCCCHHHHHHHHHHHhcCCCC--CcHHHHHHHHHHHHHhCCCcHHHHHHHHHHcCC-CH
Confidence 999999999987777789999999999999999999997543 345688899999999999999999999999987 68
Q ss_pred HHHHHHHhcccCCCCCcccHHHHHHHHhccCch-hHHHHHhHhcccCCCceeehhHHHHHHHHcCCcccCCCCCCHHHHH
Q 007817 390 DAWEEIVSSKMWDLPQQTDILAVLRLSYHYLPS-HLKRCFTYCAIFPKNYEFEKNELVFLWMGEGMIQQSRTGKLLEDLG 468 (588)
Q Consensus 390 ~~w~~~~~~~~~~~~~~~~i~~~l~~sy~~L~~-~~k~cf~~ls~Fp~~~~i~~~~Li~~W~aeg~i~~~~~~~~~e~~~ 468 (588)
.+|+.++....... +..|..+|++||+.|++ ..|.||+++|+||.+..++ .+..|++.+....
T Consensus 405 ~~W~~~l~~L~~~~--~~~I~~~L~~SYd~L~~~~~k~~Fl~ia~ff~~~~~~---~v~~~l~~~~~~~----------- 468 (1153)
T PLN03210 405 EDWMDMLPRLRNGL--DGKIEKTLRVSYDGLNNKKDKAIFRHIACLFNGEKVN---DIKLLLANSDLDV----------- 468 (1153)
T ss_pred HHHHHHHHHHHhCc--cHHHHHHHHHhhhccCccchhhhhheehhhcCCCCHH---HHHHHHHhcCCCc-----------
Confidence 89999998755433 35799999999999987 5999999999999887543 4777888765432
Q ss_pred HHHHHHHhhCCccccccCCcCeEEEchhHHHHHHHHhcccc-------eEEecCc-----ccccCCCCeeEEEEecCccC
Q 007817 469 NEFFCNPLSRSLFQQSSRDVRKFVMHDLVHDLAQLVSGATS-------FWLEEAN-----KQLRTFERIRHFSYPCAWYE 536 (588)
Q Consensus 469 ~~~l~~L~~rsllq~~~~~~~~~~mHdlv~d~a~~~~~~e~-------~~~~~~~-----~~~~~~~~~r~ls~~~~~~~ 536 (588)
+..++.|+++||++... ..+.|||++|++|+.++.++. +...... ........++++++..+..+
T Consensus 469 ~~~l~~L~~ksLi~~~~---~~~~MHdLl~~~~r~i~~~~~~~~~~r~~l~~~~di~~vl~~~~g~~~v~~i~l~~~~~~ 545 (1153)
T PLN03210 469 NIGLKNLVDKSLIHVRE---DIVEMHSLLQEMGKEIVRAQSNEPGEREFLVDAKDICDVLEDNTGTKKVLGITLDIDEID 545 (1153)
T ss_pred hhChHHHHhcCCEEEcC---CeEEhhhHHHHHHHHHHHhhcCCCCcceeEeCHHHHHHHHHhCcccceeeEEEeccCccc
Confidence 22388999999998754 579999999999999987653 2221110 00113356788887654322
Q ss_pred ccc-cccccCCCCCccEEEecc
Q 007817 537 GKN-KFHGLNKAPGLRTFLPLN 557 (588)
Q Consensus 537 ~~~-~~~~~~~~~~lrtl~~~~ 557 (588)
... .......+++||.|-+..
T Consensus 546 ~~~i~~~aF~~m~~L~~L~~~~ 567 (1153)
T PLN03210 546 ELHIHENAFKGMRNLLFLKFYT 567 (1153)
T ss_pred eeeecHHHHhcCccccEEEEec
Confidence 110 011234677788777654
No 4
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.64 E-value=2.2e-14 Score=167.54 Aligned_cols=291 Identities=13% Similarity=0.142 Sum_probs=183.7
Q ss_pred CCceeechhhHHHHHHHHhcCCCCCCCCeEEEEEEccCCCcHHHHHHHHHcccccccccccEEEEEEeC-CcccHHHHHH
Q 007817 168 ERAVYGRDEDKARMLEMVLSDDPTTDANFCVIPIVGMAGAGKTMLAREVYNDRAVQNFKFDVKAWVSVS-DDFDVLRISR 246 (588)
Q Consensus 168 ~~~~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~wv~v~-~~~~~~~~~~ 246 (588)
...++-|..-.+++ ... ...+++.|+|++|.||||++.++.+. ++.++|+++. .+.+...+..
T Consensus 13 ~~~~~~R~rl~~~l----~~~-----~~~~~~~v~apaG~GKTtl~~~~~~~-------~~~~~w~~l~~~d~~~~~f~~ 76 (903)
T PRK04841 13 LHNTVVRERLLAKL----SGA-----NNYRLVLVTSPAGYGKTTLISQWAAG-------KNNLGWYSLDESDNQPERFAS 76 (903)
T ss_pred ccccCcchHHHHHH----hcc-----cCCCeEEEECCCCCCHHHHHHHHHHh-------CCCeEEEecCcccCCHHHHHH
Confidence 34566666544444 322 25689999999999999999998852 2368899996 4446667777
Q ss_pred HHHHHhcCCCCC-------------CCCHHHHHHHHHHHhc--CCceeEEeccccccChhHHHHhhcc-cCCCCCCcEEE
Q 007817 247 ALLESITSTNCD-------------FKTLNEVQVKLRIIVD--GKKFLLVLDDVWNENYNLWEILKAP-FMAGARNSKII 310 (588)
Q Consensus 247 ~il~~l~~~~~~-------------~~~~~~l~~~l~~~l~--~k~~LLVlDdv~~~~~~~~~~l~~~-l~~~~~gs~il 310 (588)
.++..+....+. ..+...+...+...+. +.+++|||||++..+......+... +.....+.++|
T Consensus 77 ~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~lvlDD~h~~~~~~~~~~l~~l~~~~~~~~~lv 156 (903)
T PRK04841 77 YLIAALQQATNGHCSKSEALAQKRQYASLSSLFAQLFIELADWHQPLYLVIDDYHLITNPEIHEAMRFFLRHQPENLTLV 156 (903)
T ss_pred HHHHHHHHhcCcccchhhhhhccCCcCCHHHHHHHHHHHHhcCCCCEEEEEeCcCcCCChHHHHHHHHHHHhCCCCeEEE
Confidence 777777422111 0122233333333332 6799999999987654444433333 33344567888
Q ss_pred Eeecchhhhhh--c-cccceeeCC----CCCHHHHHHHHHHhhcCCCCCCCChhHHHHHHHHHHHhCCCchHHHHhhhhc
Q 007817 311 VTTCHSNVASM--M-GSVEHYNLK----LLSDEYCWSVFVKHAFERRDAGAHQFSKLFRKKIVAKCGGLPLAVSTLGGLL 383 (588)
Q Consensus 311 vTTR~~~v~~~--~-~~~~~~~l~----~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~i~~~I~~~c~GlPLai~~~~~~L 383 (588)
||||....... . ......++. +|+.+|+.+||....... . ..+...+|.+.|+|+|+++..++..+
T Consensus 157 ~~sR~~~~~~~~~l~~~~~~~~l~~~~l~f~~~e~~~ll~~~~~~~----~---~~~~~~~l~~~t~Gwp~~l~l~~~~~ 229 (903)
T PRK04841 157 VLSRNLPPLGIANLRVRDQLLEIGSQQLAFDHQEAQQFFDQRLSSP----I---EAAESSRLCDDVEGWATALQLIALSA 229 (903)
T ss_pred EEeCCCCCCchHhHHhcCcceecCHHhCCCCHHHHHHHHHhccCCC----C---CHHHHHHHHHHhCChHHHHHHHHHHH
Confidence 99998422111 1 122345555 999999999998765321 1 12335679999999999999998877
Q ss_pred cCCCC-HHHHHHHHhcccCCCC--CcccHHHHHHHH-hccCchhHHHHHhHhcccCCCceeehhHHHHHHHHcCCcccCC
Q 007817 384 RTRHT-EDAWEEIVSSKMWDLP--QQTDILAVLRLS-YHYLPSHLKRCFTYCAIFPKNYEFEKNELVFLWMGEGMIQQSR 459 (588)
Q Consensus 384 ~~~~~-~~~w~~~~~~~~~~~~--~~~~i~~~l~~s-y~~L~~~~k~cf~~ls~Fp~~~~i~~~~Li~~W~aeg~i~~~~ 459 (588)
+.... .... . +.+. ....+...+.-. ++.||++.+..+...|+++ .|+.+.+-.+. | .
T Consensus 230 ~~~~~~~~~~---~----~~~~~~~~~~~~~~l~~~v~~~l~~~~~~~l~~~a~~~---~~~~~l~~~l~---~---~-- 291 (903)
T PRK04841 230 RQNNSSLHDS---A----RRLAGINASHLSDYLVEEVLDNVDLETRHFLLRCSVLR---SMNDALIVRVT---G---E-- 291 (903)
T ss_pred hhCCCchhhh---h----HhhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcccc---cCCHHHHHHHc---C---C--
Confidence 55432 1110 0 1111 123455554444 8999999999999999997 33433322111 1 1
Q ss_pred CCCCHHHHHHHHHHHHhhCCcccc-ccCCcCeEEEchhHHHHHHHHh
Q 007817 460 TGKLLEDLGNEFFCNPLSRSLFQQ-SSRDVRKFVMHDLVHDLAQLVS 505 (588)
Q Consensus 460 ~~~~~e~~~~~~l~~L~~rsllq~-~~~~~~~~~mHdlv~d~a~~~~ 505 (588)
+.+...+++|.+.++|.. .+.+...|+.|++++++++...
T Consensus 292 ------~~~~~~L~~l~~~~l~~~~~~~~~~~yr~H~L~r~~l~~~l 332 (903)
T PRK04841 292 ------ENGQMRLEELERQGLFIQRMDDSGEWFRYHPLFASFLRHRC 332 (903)
T ss_pred ------CcHHHHHHHHHHCCCeeEeecCCCCEEehhHHHHHHHHHHH
Confidence 124678999999999753 3323457999999999998765
No 5
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=99.49 E-value=1.1e-11 Score=130.76 Aligned_cols=302 Identities=13% Similarity=0.063 Sum_probs=179.3
Q ss_pred CCCceeechhhHHHHHHHHhcCCCCCCCCeEEEEEEccCCCcHHHHHHHHHcccccccccccEEEEEEeCCcccHHHHHH
Q 007817 167 TERAVYGRDEDKARMLEMVLSDDPTTDANFCVIPIVGMAGAGKTMLAREVYNDRAVQNFKFDVKAWVSVSDDFDVLRISR 246 (588)
Q Consensus 167 ~~~~~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~ 246 (588)
.+..++||++|+++|...+...-. +.....+.|+|++|+|||++++.++++..... ..-..+++++....+...++.
T Consensus 28 ~P~~l~~Re~e~~~l~~~l~~~~~--~~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~-~~~~~v~in~~~~~~~~~~~~ 104 (394)
T PRK00411 28 VPENLPHREEQIEELAFALRPALR--GSRPLNVLIYGPPGTGKTTTVKKVFEELEEIA-VKVVYVYINCQIDRTRYAIFS 104 (394)
T ss_pred cCCCCCCHHHHHHHHHHHHHHHhC--CCCCCeEEEECCCCCCHHHHHHHHHHHHHHhc-CCcEEEEEECCcCCCHHHHHH
Confidence 456799999999999999854321 12345678999999999999999999765432 234567788777778889999
Q ss_pred HHHHHhcCC-CC-CCCCHHHHHHHHHHHhc--CCceeEEeccccccC----hhHHHHhhcccCCCC-CCcEEEEeecchh
Q 007817 247 ALLESITST-NC-DFKTLNEVQVKLRIIVD--GKKFLLVLDDVWNEN----YNLWEILKAPFMAGA-RNSKIIVTTCHSN 317 (588)
Q Consensus 247 ~il~~l~~~-~~-~~~~~~~l~~~l~~~l~--~k~~LLVlDdv~~~~----~~~~~~l~~~l~~~~-~gs~ilvTTR~~~ 317 (588)
.++.++... .+ ...+..++...+.+.+. +++.+||||+++.-. .+.+..+...+.... .+..+|.++....
T Consensus 105 ~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~viviDE~d~l~~~~~~~~l~~l~~~~~~~~~~~v~vI~i~~~~~ 184 (394)
T PRK00411 105 EIARQLFGHPPPSSGLSFDELFDKIAEYLDERDRVLIVALDDINYLFEKEGNDVLYSLLRAHEEYPGARIGVIGISSDLT 184 (394)
T ss_pred HHHHHhcCCCCCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCHhHhhccCCchHHHHHHHhhhccCCCeEEEEEEECCcc
Confidence 999998752 21 22345666677777664 456899999997532 223333333222211 1233566665544
Q ss_pred hhhhcc-------ccceeeCCCCCHHHHHHHHHHhhcCC--CCCCCChhHHHHHHHHHHHhCCCchHHHHhhhhc-----
Q 007817 318 VASMMG-------SVEHYNLKLLSDEYCWSVFVKHAFER--RDAGAHQFSKLFRKKIVAKCGGLPLAVSTLGGLL----- 383 (588)
Q Consensus 318 v~~~~~-------~~~~~~l~~L~~~ea~~Lf~~~a~~~--~~~~~~~~~~~i~~~I~~~c~GlPLai~~~~~~L----- 383 (588)
+..... ....+.+.+++.++..+++..++... .....+..+..+++......|..+.|+.++-.+.
T Consensus 185 ~~~~l~~~~~s~~~~~~i~f~py~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~r~a~~ll~~a~~~a~~ 264 (394)
T PRK00411 185 FLYILDPRVKSVFRPEEIYFPPYTADEIFDILKDRVEEGFYPGVVDDEVLDLIADLTAREHGDARVAIDLLRRAGLIAER 264 (394)
T ss_pred hhhhcCHHHHhcCCcceeecCCCCHHHHHHHHHHHHHhhcccCCCCHhHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHH
Confidence 332221 12468999999999999999876321 1112233344444444444566777777664322
Q ss_pred cCC--CCHHHHHHHHhcccCCCCCcccHHHHHHHHhccCchhHHHHHhHhccc-CC-CceeehhHHHHH--HHHcCCccc
Q 007817 384 RTR--HTEDAWEEIVSSKMWDLPQQTDILAVLRLSYHYLPSHLKRCFTYCAIF-PK-NYEFEKNELVFL--WMGEGMIQQ 457 (588)
Q Consensus 384 ~~~--~~~~~w~~~~~~~~~~~~~~~~i~~~l~~sy~~L~~~~k~cf~~ls~F-p~-~~~i~~~~Li~~--W~aeg~i~~ 457 (588)
+.. -+.+....+.+.. -.....-.+..||.+.|..+..++.. .. ...+....+... .+++.+-..
T Consensus 265 ~~~~~I~~~~v~~a~~~~---------~~~~~~~~~~~L~~~~k~~L~ai~~~~~~~~~~~~~~~i~~~y~~l~~~~~~~ 335 (394)
T PRK00411 265 EGSRKVTEEDVRKAYEKS---------EIVHLSEVLRTLPLHEKLLLRAIVRLLKKGGDEVTTGEVYEEYKELCEELGYE 335 (394)
T ss_pred cCCCCcCHHHHHHHHHHH---------HHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHcCCC
Confidence 111 2344454444321 12234556889999988877665533 21 123444444432 222211110
Q ss_pred CCCCCCHHHHHHHHHHHHhhCCccccc
Q 007817 458 SRTGKLLEDLGNEFFCNPLSRSLFQQS 484 (588)
Q Consensus 458 ~~~~~~~e~~~~~~l~~L~~rsllq~~ 484 (588)
..-......|+++|...|+++..
T Consensus 336 ----~~~~~~~~~~l~~L~~~glI~~~ 358 (394)
T PRK00411 336 ----PRTHTRFYEYINKLDMLGIINTR 358 (394)
T ss_pred ----cCcHHHHHHHHHHHHhcCCeEEE
Confidence 11123345688999999998753
No 6
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=99.43 E-value=1.7e-11 Score=131.93 Aligned_cols=297 Identities=17% Similarity=0.183 Sum_probs=196.0
Q ss_pred CCceeechhhHHHHHHHHhcCCCCCCCCeEEEEEEccCCCcHHHHHHHHHcccccccccccEEEEEEeCCc-ccHHHHHH
Q 007817 168 ERAVYGRDEDKARMLEMVLSDDPTTDANFCVIPIVGMAGAGKTMLAREVYNDRAVQNFKFDVKAWVSVSDD-FDVLRISR 246 (588)
Q Consensus 168 ~~~~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~wv~v~~~-~~~~~~~~ 246 (588)
+...+-|.. |.+.|... .+.+.+.|..|+|.|||||+.+.+.... .-..+.|.++.+. .+...+..
T Consensus 18 ~~~~v~R~r----L~~~L~~~-----~~~RL~li~APAGfGKttl~aq~~~~~~----~~~~v~Wlslde~dndp~rF~~ 84 (894)
T COG2909 18 PDNYVVRPR----LLDRLRRA-----NDYRLILISAPAGFGKTTLLAQWRELAA----DGAAVAWLSLDESDNDPARFLS 84 (894)
T ss_pred cccccccHH----HHHHHhcC-----CCceEEEEeCCCCCcHHHHHHHHHHhcC----cccceeEeecCCccCCHHHHHH
Confidence 344555544 55555433 3679999999999999999999987222 2357899999754 56788888
Q ss_pred HHHHHhcCCCCC-------------CCCHHHHHHHHHHHhc--CCceeEEeccccccChhHH-HHhhcccCCCCCCcEEE
Q 007817 247 ALLESITSTNCD-------------FKTLNEVQVKLRIIVD--GKKFLLVLDDVWNENYNLW-EILKAPFMAGARNSKII 310 (588)
Q Consensus 247 ~il~~l~~~~~~-------------~~~~~~l~~~l~~~l~--~k~~LLVlDdv~~~~~~~~-~~l~~~l~~~~~gs~il 310 (588)
.++..++.-.++ ..+...+...+...+. .++..|||||-+-...... ..+...+.....+-.++
T Consensus 85 yLi~al~~~~p~~~~~a~~l~q~~~~~~l~~l~~~L~~Ela~~~~pl~LVlDDyHli~~~~l~~~l~fLl~~~P~~l~lv 164 (894)
T COG2909 85 YLIAALQQATPTLGDEAQTLLQKHQYVSLESLLSSLLNELASYEGPLYLVLDDYHLISDPALHEALRFLLKHAPENLTLV 164 (894)
T ss_pred HHHHHHHHhCccccHHHHHHHHhcccccHHHHHHHHHHHHHhhcCceEEEeccccccCcccHHHHHHHHHHhCCCCeEEE
Confidence 888888743332 2334445555555443 5689999999764433233 33444445566788999
Q ss_pred Eeecchhhhhhc---cccceeeCC----CCCHHHHHHHHHHhhcCCCCCCCChhHHHHHHHHHHHhCCCchHHHHhhhhc
Q 007817 311 VTTCHSNVASMM---GSVEHYNLK----LLSDEYCWSVFVKHAFERRDAGAHQFSKLFRKKIVAKCGGLPLAVSTLGGLL 383 (588)
Q Consensus 311 vTTR~~~v~~~~---~~~~~~~l~----~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~i~~~I~~~c~GlPLai~~~~~~L 383 (588)
||||+..-...- -....++++ .|+.+|+-++|...... +-.+.-.+.+.+...|.+-|+..++=.+
T Consensus 165 v~SR~rP~l~la~lRlr~~llEi~~~~Lrf~~eE~~~fl~~~~~l-------~Ld~~~~~~L~~~teGW~~al~L~aLa~ 237 (894)
T COG2909 165 VTSRSRPQLGLARLRLRDELLEIGSEELRFDTEEAAAFLNDRGSL-------PLDAADLKALYDRTEGWAAALQLIALAL 237 (894)
T ss_pred EEeccCCCCcccceeehhhHHhcChHhhcCChHHHHHHHHHcCCC-------CCChHHHHHHHhhcccHHHHHHHHHHHc
Confidence 999987443321 123345554 48999999999887521 1112235679999999999999999998
Q ss_pred cCCCCHHHHHHHHhcccCCCCCcccHHH-HHHHHhccCchhHHHHHhHhcccCCCceeehhHHHHHHHHcCCcccCCCCC
Q 007817 384 RTRHTEDAWEEIVSSKMWDLPQQTDILA-VLRLSYHYLPSHLKRCFTYCAIFPKNYEFEKNELVFLWMGEGMIQQSRTGK 462 (588)
Q Consensus 384 ~~~~~~~~w~~~~~~~~~~~~~~~~i~~-~l~~sy~~L~~~~k~cf~~ls~Fp~~~~i~~~~Li~~W~aeg~i~~~~~~~ 462 (588)
+.+.+.+.-...+... ...+.. ...--++.||+++|.-++-||+++.= . ..|+..-..
T Consensus 238 ~~~~~~~q~~~~LsG~------~~~l~dYL~eeVld~Lp~~l~~FLl~~svl~~f---~-~eL~~~Ltg----------- 296 (894)
T COG2909 238 RNNTSAEQSLRGLSGA------ASHLSDYLVEEVLDRLPPELRDFLLQTSVLSRF---N-DELCNALTG----------- 296 (894)
T ss_pred cCCCcHHHHhhhccch------HHHHHHHHHHHHHhcCCHHHHHHHHHHHhHHHh---h-HHHHHHHhc-----------
Confidence 8544443322222110 122222 23344689999999999999999642 1 334432211
Q ss_pred CHHHHHHHHHHHHhhCCccc-cccCCcCeEEEchhHHHHHHHHhcc
Q 007817 463 LLEDLGNEFFCNPLSRSLFQ-QSSRDVRKFVMHDLVHDLAQLVSGA 507 (588)
Q Consensus 463 ~~e~~~~~~l~~L~~rsllq-~~~~~~~~~~mHdlv~d~a~~~~~~ 507 (588)
++-+...+++|.+++||- +-+.....|+.|.++.||.+.-...
T Consensus 297 --~~ng~amLe~L~~~gLFl~~Ldd~~~WfryH~LFaeFL~~r~~~ 340 (894)
T COG2909 297 --EENGQAMLEELERRGLFLQRLDDEGQWFRYHHLFAEFLRQRLQR 340 (894)
T ss_pred --CCcHHHHHHHHHhCCCceeeecCCCceeehhHHHHHHHHhhhcc
Confidence 233677899999999984 5555678999999999999876654
No 7
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=99.39 E-value=2.5e-10 Score=119.09 Aligned_cols=303 Identities=16% Similarity=0.057 Sum_probs=175.2
Q ss_pred CCceeechhhHHHHHHHHhcCCCCCCCCeEEEEEEccCCCcHHHHHHHHHcccccccccc---cEEEEEEeCCcccHHHH
Q 007817 168 ERAVYGRDEDKARMLEMVLSDDPTTDANFCVIPIVGMAGAGKTMLAREVYNDRAVQNFKF---DVKAWVSVSDDFDVLRI 244 (588)
Q Consensus 168 ~~~~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~~f---~~~~wv~v~~~~~~~~~ 244 (588)
+..++||+.|+++|..+|..... +.....+.|+|++|+|||++++.++++........ -..+|+++....+...+
T Consensus 14 p~~l~gRe~e~~~l~~~l~~~~~--~~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~~~~~~~~~~ 91 (365)
T TIGR02928 14 PDRIVHRDEQIEELAKALRPILR--GSRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNCQILDTLYQV 91 (365)
T ss_pred CCCCCCcHHHHHHHHHHHHHHHc--CCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEECCCCCCHHHH
Confidence 34789999999999999875321 12345789999999999999999998653211011 24568888777777889
Q ss_pred HHHHHHHhc---CCCC-CCCCHHHHHHHHHHHhc--CCceeEEeccccccC---hhHHHHhhccc--CC-CCCCcEEEEe
Q 007817 245 SRALLESIT---STNC-DFKTLNEVQVKLRIIVD--GKKFLLVLDDVWNEN---YNLWEILKAPF--MA-GARNSKIIVT 312 (588)
Q Consensus 245 ~~~il~~l~---~~~~-~~~~~~~l~~~l~~~l~--~k~~LLVlDdv~~~~---~~~~~~l~~~l--~~-~~~gs~ilvT 312 (588)
+..|+.++. ...+ ...+..+....+.+.+. +++++||||+++.-. ......+.... .. ......+|.+
T Consensus 92 ~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~d~L~~~~~~~L~~l~~~~~~~~~~~~~v~lI~i 171 (365)
T TIGR02928 92 LVELANQLRGSGEEVPTTGLSTSEVFRRLYKELNERGDSLIIVLDEIDYLVGDDDDLLYQLSRARSNGDLDNAKVGVIGI 171 (365)
T ss_pred HHHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEECchhhhccCCcHHHHhHhccccccCCCCCeEEEEEE
Confidence 999999884 2211 12234455555555553 568899999996541 11222332221 11 1123345555
Q ss_pred ecchhhhhhcc-------ccceeeCCCCCHHHHHHHHHHhhcC-CCCCCCChhHHHHHHHHHHHhCCCchHHHHhh-hhc
Q 007817 313 TCHSNVASMMG-------SVEHYNLKLLSDEYCWSVFVKHAFE-RRDAGAHQFSKLFRKKIVAKCGGLPLAVSTLG-GLL 383 (588)
Q Consensus 313 TR~~~v~~~~~-------~~~~~~l~~L~~~ea~~Lf~~~a~~-~~~~~~~~~~~~i~~~I~~~c~GlPLai~~~~-~~L 383 (588)
|........+. ....+.+.+++.++..+++..++.. .......+...+....++..+.|.|-.+..+. ...
T Consensus 172 ~n~~~~~~~l~~~~~s~~~~~~i~f~p~~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~R~al~~l~~a~ 251 (365)
T TIGR02928 172 SNDLKFRENLDPRVKSSLCEEEIIFPPYDAEELRDILENRAEKAFYDGVLDDGVIPLCAALAAQEHGDARKAIDLLRVAG 251 (365)
T ss_pred ECCcchHhhcCHHHhccCCcceeeeCCCCHHHHHHHHHHHHHhhccCCCCChhHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 54443322111 1246899999999999999988631 11111223333344557777788885443322 111
Q ss_pred ----c-C--CCCHHHHHHHHhcccCCCCCcccHHHHHHHHhccCchhHHHHHhHhccc--CCCceeehhHHHHHH--HHc
Q 007817 384 ----R-T--RHTEDAWEEIVSSKMWDLPQQTDILAVLRLSYHYLPSHLKRCFTYCAIF--PKNYEFEKNELVFLW--MGE 452 (588)
Q Consensus 384 ----~-~--~~~~~~w~~~~~~~~~~~~~~~~i~~~l~~sy~~L~~~~k~cf~~ls~F--p~~~~i~~~~Li~~W--~ae 452 (588)
. . .-+.+......+.. -.....-++..||.+.+..+..++.. .++..+....+...+ +++
T Consensus 252 ~~a~~~~~~~it~~~v~~a~~~~---------~~~~~~~~i~~l~~~~~~~l~ai~~~~~~~~~~~~~~~~~~~y~~~~~ 322 (365)
T TIGR02928 252 EIAEREGAERVTEDHVEKAQEKI---------EKDRLLELIRGLPTHSKLVLLAIANLAANDEDPFRTGEVYEVYKEVCE 322 (365)
T ss_pred HHHHHcCCCCCCHHHHHHHHHHH---------HHHHHHHHHHcCCHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHH
Confidence 1 1 12333333333211 11234456789999888766665422 133446666666633 122
Q ss_pred CCcccCCCCCCHHHHHHHHHHHHhhCCcccccc
Q 007817 453 GMIQQSRTGKLLEDLGNEFFCNPLSRSLFQQSS 485 (588)
Q Consensus 453 g~i~~~~~~~~~e~~~~~~l~~L~~rsllq~~~ 485 (588)
.+- ...........+++.|...|++....
T Consensus 323 ~~~----~~~~~~~~~~~~l~~l~~~gli~~~~ 351 (365)
T TIGR02928 323 DIG----VDPLTQRRISDLLNELDMLGLVEAEE 351 (365)
T ss_pred hcC----CCCCcHHHHHHHHHHHHhcCCeEEEE
Confidence 111 11223456778899999999998643
No 8
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=99.39 E-value=4.7e-11 Score=118.99 Aligned_cols=182 Identities=21% Similarity=0.174 Sum_probs=117.8
Q ss_pred eEEEEEEccCCCcHHHHHHHHHcccccccccccEEEEEEeCCcccHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHH---
Q 007817 196 FCVIPIVGMAGAGKTMLAREVYNDRAVQNFKFDVKAWVSVSDDFDVLRISRALLESITSTNCDFKTLNEVQVKLRII--- 272 (588)
Q Consensus 196 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~il~~l~~~~~~~~~~~~l~~~l~~~--- 272 (588)
...+.|+|++|+|||||++.+++...... . ..+|+. ....+..+++..|+..++..... .+.......+...
T Consensus 43 ~~~~~l~G~~G~GKTtl~~~l~~~l~~~~--~-~~~~~~-~~~~~~~~~l~~i~~~lG~~~~~-~~~~~~~~~l~~~l~~ 117 (269)
T TIGR03015 43 EGFILITGEVGAGKTTLIRNLLKRLDQER--V-VAAKLV-NTRVDAEDLLRMVAADFGLETEG-RDKAALLRELEDFLIE 117 (269)
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHhcCCCC--e-EEeeee-CCCCCHHHHHHHHHHHcCCCCCC-CCHHHHHHHHHHHHHH
Confidence 35889999999999999999998765321 1 223332 33456778888999888765432 2222333333322
Q ss_pred --hcCCceeEEeccccccChhHHHHhhcccCC---CCCCcEEEEeecchhhhhhcc----------ccceeeCCCCCHHH
Q 007817 273 --VDGKKFLLVLDDVWNENYNLWEILKAPFMA---GARNSKIIVTTCHSNVASMMG----------SVEHYNLKLLSDEY 337 (588)
Q Consensus 273 --l~~k~~LLVlDdv~~~~~~~~~~l~~~l~~---~~~gs~ilvTTR~~~v~~~~~----------~~~~~~l~~L~~~e 337 (588)
..+++.+||+||+|..+...++.+...... ......|++|.... ....+. ....+++++|+.+|
T Consensus 118 ~~~~~~~~vliiDe~~~l~~~~~~~l~~l~~~~~~~~~~~~vvl~g~~~-~~~~l~~~~~~~l~~r~~~~~~l~~l~~~e 196 (269)
T TIGR03015 118 QFAAGKRALLVVDEAQNLTPELLEELRMLSNFQTDNAKLLQIFLVGQPE-FRETLQSPQLQQLRQRIIASCHLGPLDREE 196 (269)
T ss_pred HHhCCCCeEEEEECcccCCHHHHHHHHHHhCcccCCCCeEEEEEcCCHH-HHHHHcCchhHHHHhheeeeeeCCCCCHHH
Confidence 267889999999998776677766533221 12233455665433 221111 13467899999999
Q ss_pred HHHHHHHhhcCCCCCCCChhHHHHHHHHHHHhCCCchHHHHhhhhc
Q 007817 338 CWSVFVKHAFERRDAGAHQFSKLFRKKIVAKCGGLPLAVSTLGGLL 383 (588)
Q Consensus 338 a~~Lf~~~a~~~~~~~~~~~~~~i~~~I~~~c~GlPLai~~~~~~L 383 (588)
..+++...+...+.........+..+.|++.|+|.|..|..++..+
T Consensus 197 ~~~~l~~~l~~~g~~~~~~~~~~~~~~i~~~s~G~p~~i~~l~~~~ 242 (269)
T TIGR03015 197 TREYIEHRLERAGNRDAPVFSEGAFDAIHRFSRGIPRLINILCDRL 242 (269)
T ss_pred HHHHHHHHHHHcCCCCCCCcCHHHHHHHHHHcCCcccHHHHHHHHH
Confidence 9999988764322211122344567889999999999999988776
No 9
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=99.30 E-value=9.5e-11 Score=118.99 Aligned_cols=276 Identities=13% Similarity=0.059 Sum_probs=143.7
Q ss_pred CceeechhhHHHHHHHHhcCCCCCCCCeEEEEEEccCCCcHHHHHHHHHcccccccccccEEEEEEeCCcccHHHHHHHH
Q 007817 169 RAVYGRDEDKARMLEMVLSDDPTTDANFCVIPIVGMAGAGKTMLAREVYNDRAVQNFKFDVKAWVSVSDDFDVLRISRAL 248 (588)
Q Consensus 169 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i 248 (588)
.+|+|++..++.|..++..... ....+..+.|+|++|+|||+||+.+++.... .+. .+..+...... .+...
T Consensus 4 ~~~iG~~~~~~~l~~~l~~~~~-~~~~~~~~ll~Gp~G~GKT~la~~ia~~~~~---~~~---~~~~~~~~~~~-~l~~~ 75 (305)
T TIGR00635 4 AEFIGQEKVKEQLQLFIEAAKM-RQEALDHLLLYGPPGLGKTTLAHIIANEMGV---NLK---ITSGPALEKPG-DLAAI 75 (305)
T ss_pred HHHcCHHHHHHHHHHHHHHHHh-cCCCCCeEEEECCCCCCHHHHHHHHHHHhCC---CEE---EeccchhcCch-hHHHH
Confidence 3689999999999998864321 1223456889999999999999999986542 111 11111111111 11122
Q ss_pred HHHhcCCCC----CCCC-HHHHHHHHHHHhcCCceeEEeccccccChhHHHHhhcccCCCCCCcEEEEeecchhhhhhcc
Q 007817 249 LESITSTNC----DFKT-LNEVQVKLRIIVDGKKFLLVLDDVWNENYNLWEILKAPFMAGARNSKIIVTTCHSNVASMMG 323 (588)
Q Consensus 249 l~~l~~~~~----~~~~-~~~l~~~l~~~l~~k~~LLVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTTR~~~v~~~~~ 323 (588)
+..+....- +... .......+...+.+.+..+|+++..+.. .+ ...+ .+.+-|..||+...+...+.
T Consensus 76 l~~~~~~~vl~iDEi~~l~~~~~e~l~~~~~~~~~~~v~~~~~~~~--~~---~~~~---~~~~li~~t~~~~~l~~~l~ 147 (305)
T TIGR00635 76 LTNLEEGDVLFIDEIHRLSPAVEELLYPAMEDFRLDIVIGKGPSAR--SV---RLDL---PPFTLVGATTRAGMLTSPLR 147 (305)
T ss_pred HHhcccCCEEEEehHhhhCHHHHHHhhHHHhhhheeeeeccCcccc--ce---eecC---CCeEEEEecCCccccCHHHH
Confidence 222211100 0000 0111222333333334444444332210 00 0111 12445556666644433221
Q ss_pred --ccceeeCCCCCHHHHHHHHHHhhcCCCCCCCChhHHHHHHHHHHHhCCCchHHHHhhhhccCCCCHHHHHHHHhcccC
Q 007817 324 --SVEHYNLKLLSDEYCWSVFVKHAFERRDAGAHQFSKLFRKKIVAKCGGLPLAVSTLGGLLRTRHTEDAWEEIVSSKMW 401 (588)
Q Consensus 324 --~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~i~~~I~~~c~GlPLai~~~~~~L~~~~~~~~w~~~~~~~~~ 401 (588)
....+.+++++.++..+++.+.+...+. . ...+....|++.|+|.|-.+..++..+ |.........
T Consensus 148 sR~~~~~~l~~l~~~e~~~il~~~~~~~~~-~---~~~~al~~ia~~~~G~pR~~~~ll~~~--------~~~a~~~~~~ 215 (305)
T TIGR00635 148 DRFGIILRLEFYTVEELAEIVSRSAGLLNV-E---IEPEAALEIARRSRGTPRIANRLLRRV--------RDFAQVRGQK 215 (305)
T ss_pred hhcceEEEeCCCCHHHHHHHHHHHHHHhCC-C---cCHHHHHHHHHHhCCCcchHHHHHHHH--------HHHHHHcCCC
Confidence 2346789999999999999988753322 1 223345679999999997765555432 1111000000
Q ss_pred CCCC--cccHHHHHHHHhccCchhHHHHHh-HhcccCCCceeehhHHHHHHHHcCCcccCCCCCCHHHHHHHHHH-HHhh
Q 007817 402 DLPQ--QTDILAVLRLSYHYLPSHLKRCFT-YCAIFPKNYEFEKNELVFLWMGEGMIQQSRTGKLLEDLGNEFFC-NPLS 477 (588)
Q Consensus 402 ~~~~--~~~i~~~l~~sy~~L~~~~k~cf~-~ls~Fp~~~~i~~~~Li~~W~aeg~i~~~~~~~~~e~~~~~~l~-~L~~ 477 (588)
.... -......+...|..|+++.+..+. .++.++.+ .+..+.+.... | .+ ...++..++ .|++
T Consensus 216 ~it~~~v~~~l~~l~~~~~~l~~~~~~~L~al~~~~~~~-~~~~~~ia~~l---g--------~~-~~~~~~~~e~~Li~ 282 (305)
T TIGR00635 216 IINRDIALKALEMLMIDELGLDEIDRKLLSVLIEQFQGG-PVGLKTLAAAL---G--------ED-ADTIEDVYEPYLLQ 282 (305)
T ss_pred CcCHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHhCCC-cccHHHHHHHh---C--------CC-cchHHHhhhHHHHH
Confidence 1110 112223356678889988877666 55777544 44544443322 1 11 123566677 6999
Q ss_pred CCcccccc
Q 007817 478 RSLFQQSS 485 (588)
Q Consensus 478 rsllq~~~ 485 (588)
++|++...
T Consensus 283 ~~li~~~~ 290 (305)
T TIGR00635 283 IGFLQRTP 290 (305)
T ss_pred cCCcccCC
Confidence 99997554
No 10
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=99.30 E-value=1.8e-11 Score=118.91 Aligned_cols=196 Identities=21% Similarity=0.257 Sum_probs=100.5
Q ss_pred eeechhhHHHHHHHHhcCCCCCCCCeEEEEEEccCCCcHHHHHHHHHcccccccccccEEEEEEeCCcccHHHHHH----
Q 007817 171 VYGRDEDKARMLEMVLSDDPTTDANFCVIPIVGMAGAGKTMLAREVYNDRAVQNFKFDVKAWVSVSDDFDVLRISR---- 246 (588)
Q Consensus 171 ~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~---- 246 (588)
|+||+.|+++|.+++.... ...+.|+|+.|+|||+|++.+.+.....+ + ..+|+..........+..
T Consensus 1 F~gR~~el~~l~~~l~~~~------~~~~~l~G~rg~GKTsLl~~~~~~~~~~~--~-~~~y~~~~~~~~~~~~~~~~~~ 71 (234)
T PF01637_consen 1 FFGREKELEKLKELLESGP------SQHILLYGPRGSGKTSLLKEFINELKEKG--Y-KVVYIDFLEESNESSLRSFIEE 71 (234)
T ss_dssp S-S-HHHHHHHHHCHHH--------SSEEEEEESTTSSHHHHHHHHHHHCT--E--E-CCCHHCCTTBSHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhhc------CcEEEEEcCCcCCHHHHHHHHHHHhhhcC--C-cEEEEecccchhhhHHHHHHHH
Confidence 7899999999999987642 36899999999999999999999764322 2 344444433332211111
Q ss_pred -----H----HHHHhcCCCC------CCCCHHHHHHHHHHHh--cCCceeEEeccccccC------hhHHHHhhcccCC-
Q 007817 247 -----A----LLESITSTNC------DFKTLNEVQVKLRIIV--DGKKFLLVLDDVWNEN------YNLWEILKAPFMA- 302 (588)
Q Consensus 247 -----~----il~~l~~~~~------~~~~~~~l~~~l~~~l--~~k~~LLVlDdv~~~~------~~~~~~l~~~l~~- 302 (588)
. +...+..... ...........+.+.+ .+++++||+||+.... ......+...+..
T Consensus 72 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~iiviDe~~~~~~~~~~~~~~~~~l~~~~~~~ 151 (234)
T PF01637_consen 72 TSLADELSEALGISIPSITLEKISKDLSEDSFSALERLLEKLKKKGKKVIIVIDEFQYLAIASEEDKDFLKSLRSLLDSL 151 (234)
T ss_dssp HHHHCHCHHHHHHHCCTSTTEEEECTS-GG-G--HHHHHHHHHHCHCCEEEEEETGGGGGBCTTTTHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHhhhcccccchhhhhcchhhHHHHHHHHHHHHHhcCCcEEEEEecHHHHhhcccchHHHHHHHHHHHhhc
Confidence 1 1111111100 0111112222222223 2445999999996544 1222233333222
Q ss_pred -CCCCcEEEEeecchhhhhh--------ccccceeeCCCCCHHHHHHHHHHhhcCCCCCCCChhHHHHHHHHHHHhCCCc
Q 007817 303 -GARNSKIIVTTCHSNVASM--------MGSVEHYNLKLLSDEYCWSVFVKHAFERRDAGAHQFSKLFRKKIVAKCGGLP 373 (588)
Q Consensus 303 -~~~gs~ilvTTR~~~v~~~--------~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~i~~~I~~~c~GlP 373 (588)
......+++++........ .+....+.+++|+.+++++++....-.. ... +......++|+..+||+|
T Consensus 152 ~~~~~~~~v~~~S~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~e~~~~~~~~~~~~--~~~-~~~~~~~~~i~~~~gG~P 228 (234)
T PF01637_consen 152 LSQQNVSIVITGSSDSLMEEFLDDKSPLFGRFSHIELKPLSKEEAREFLKELFKEL--IKL-PFSDEDIEEIYSLTGGNP 228 (234)
T ss_dssp ---TTEEEEEEESSHHHHHHTT-TTSTTTT---EEEE----HHHHHHHHHHHHHCC---------HHHHHHHHHHHTT-H
T ss_pred cccCCceEEEECCchHHHHHhhcccCccccccceEEEeeCCHHHHHHHHHHHHHHh--hcc-cCCHHHHHHHHHHhCCCH
Confidence 1223334444444433322 2233459999999999999999875332 111 223344578999999999
Q ss_pred hHHHH
Q 007817 374 LAVST 378 (588)
Q Consensus 374 Lai~~ 378 (588)
..|..
T Consensus 229 ~~l~~ 233 (234)
T PF01637_consen 229 RYLQE 233 (234)
T ss_dssp HHHHH
T ss_pred HHHhc
Confidence 98864
No 11
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=99.30 E-value=6.4e-11 Score=121.24 Aligned_cols=263 Identities=14% Similarity=0.102 Sum_probs=146.0
Q ss_pred CCceeechhhHHHHHHHHhcCCCCCCCCeEEEEEEccCCCcHHHHHHHHHcccccccccccEEEEEEeCCcccHHHHHHH
Q 007817 168 ERAVYGRDEDKARMLEMVLSDDPTTDANFCVIPIVGMAGAGKTMLAREVYNDRAVQNFKFDVKAWVSVSDDFDVLRISRA 247 (588)
Q Consensus 168 ~~~~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~ 247 (588)
-.+|+|++..++.+..++..... .......+.|+|++|+|||+||+.+++..... + .++..+ .......+..
T Consensus 24 ~~~~vG~~~~~~~l~~~l~~~~~-~~~~~~~~ll~GppG~GKT~la~~ia~~l~~~---~---~~~~~~-~~~~~~~l~~ 95 (328)
T PRK00080 24 LDEFIGQEKVKENLKIFIEAAKK-RGEALDHVLLYGPPGLGKTTLANIIANEMGVN---I---RITSGP-ALEKPGDLAA 95 (328)
T ss_pred HHHhcCcHHHHHHHHHHHHHHHh-cCCCCCcEEEECCCCccHHHHHHHHHHHhCCC---e---EEEecc-cccChHHHHH
Confidence 35699999999999888864221 12345678899999999999999999865431 1 111111 1111111222
Q ss_pred HHHHhcCCCCCCCCHHHHHHHHHHHhcCCceeEEeccccccChhHHHHhhcccC-------------------CCCCCcE
Q 007817 248 LLESITSTNCDFKTLNEVQVKLRIIVDGKKFLLVLDDVWNENYNLWEILKAPFM-------------------AGARNSK 308 (588)
Q Consensus 248 il~~l~~~~~~~~~~~~l~~~l~~~l~~k~~LLVlDdv~~~~~~~~~~l~~~l~-------------------~~~~gs~ 308 (588)
++..+ ++.-+|+||+++.......+.+...+. ...+.+-
T Consensus 96 ~l~~l----------------------~~~~vl~IDEi~~l~~~~~e~l~~~~e~~~~~~~l~~~~~~~~~~~~l~~~~l 153 (328)
T PRK00080 96 ILTNL----------------------EEGDVLFIDEIHRLSPVVEEILYPAMEDFRLDIMIGKGPAARSIRLDLPPFTL 153 (328)
T ss_pred HHHhc----------------------ccCCEEEEecHhhcchHHHHHHHHHHHhcceeeeeccCccccceeecCCCceE
Confidence 22222 223455555554322211111111000 0012344
Q ss_pred EEEeecchhhhhhcc--ccceeeCCCCCHHHHHHHHHHhhcCCCCCCCChhHHHHHHHHHHHhCCCchHHHHhhhhccCC
Q 007817 309 IIVTTCHSNVASMMG--SVEHYNLKLLSDEYCWSVFVKHAFERRDAGAHQFSKLFRKKIVAKCGGLPLAVSTLGGLLRTR 386 (588)
Q Consensus 309 ilvTTR~~~v~~~~~--~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~i~~~I~~~c~GlPLai~~~~~~L~~~ 386 (588)
|..|++...+...+. ....+++++++.++..+++.+.+...+.. ...+....|++.|+|.|-.+..+...+
T Consensus 154 i~at~~~~~l~~~L~sRf~~~~~l~~~~~~e~~~il~~~~~~~~~~----~~~~~~~~ia~~~~G~pR~a~~~l~~~--- 226 (328)
T PRK00080 154 IGATTRAGLLTSPLRDRFGIVQRLEFYTVEELEKIVKRSARILGVE----IDEEGALEIARRSRGTPRIANRLLRRV--- 226 (328)
T ss_pred EeecCCcccCCHHHHHhcCeeeecCCCCHHHHHHHHHHHHHHcCCC----cCHHHHHHHHHHcCCCchHHHHHHHHH---
Confidence 556666544433221 23468999999999999999887543221 223446789999999996555554432
Q ss_pred CCHHHHHHHHhcccCCCCC--cccHHHHHHHHhccCchhHHHHHh-HhcccCCCceeehhHHHHHHHHcCCcccCCCCCC
Q 007817 387 HTEDAWEEIVSSKMWDLPQ--QTDILAVLRLSYHYLPSHLKRCFT-YCAIFPKNYEFEKNELVFLWMGEGMIQQSRTGKL 463 (588)
Q Consensus 387 ~~~~~w~~~~~~~~~~~~~--~~~i~~~l~~sy~~L~~~~k~cf~-~ls~Fp~~~~i~~~~Li~~W~aeg~i~~~~~~~~ 463 (588)
..|...... ..+.. -......+...+..|++..+..+. .+..|+.+ .+..+.+.... | ..
T Consensus 227 ---~~~a~~~~~--~~I~~~~v~~~l~~~~~~~~~l~~~~~~~l~~~~~~~~~~-~~~~~~~a~~l---g-----~~--- 289 (328)
T PRK00080 227 ---RDFAQVKGD--GVITKEIADKALDMLGVDELGLDEMDRKYLRTIIEKFGGG-PVGLDTLAAAL---G-----EE--- 289 (328)
T ss_pred ---HHHHHHcCC--CCCCHHHHHHHHHHhCCCcCCCCHHHHHHHHHHHHHcCCC-ceeHHHHHHHH---C-----CC---
Confidence 122221111 11111 122334456667889888777775 77778766 46666664333 1 11
Q ss_pred HHHHHHHHHH-HHhhCCcccccc
Q 007817 464 LEDLGNEFFC-NPLSRSLFQQSS 485 (588)
Q Consensus 464 ~e~~~~~~l~-~L~~rsllq~~~ 485 (588)
.+.+++.++ .|++.+|++...
T Consensus 290 -~~~~~~~~e~~Li~~~li~~~~ 311 (328)
T PRK00080 290 -RDTIEDVYEPYLIQQGFIQRTP 311 (328)
T ss_pred -cchHHHHhhHHHHHcCCcccCC
Confidence 123444555 899999998654
No 12
>COG3899 Predicted ATPase [General function prediction only]
Probab=99.14 E-value=1.2e-09 Score=123.94 Aligned_cols=312 Identities=15% Similarity=0.179 Sum_probs=184.3
Q ss_pred eeechhhHHHHHHHHhcCCCCCCCCeEEEEEEccCCCcHHHHHHHHHcccccccccccEEEEEEeCCcc---cHHHHHHH
Q 007817 171 VYGRDEDKARMLEMVLSDDPTTDANFCVIPIVGMAGAGKTMLAREVYNDRAVQNFKFDVKAWVSVSDDF---DVLRISRA 247 (588)
Q Consensus 171 ~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~wv~v~~~~---~~~~~~~~ 247 (588)
++||+.|++.|.+.+..... +...++.+.|.+|||||+|+++|......+...|-.-.+-...... .....+++
T Consensus 2 l~GRe~ev~~Ll~~f~~v~~---g~~~~~lv~G~sGIGKsalv~ev~~~i~~~~~~~i~~~f~q~~~~ipl~~lvq~~r~ 78 (849)
T COG3899 2 LYGRETELAQLLAAFDRVSK---GRGEVVLVAGESGIGKSALVNEVHKPITQQRGYFIKGKFDQFERNIPLSPLVQAFRD 78 (849)
T ss_pred CCchHhHHHHHHHHHHHHhC---CCeEEEEEeecCCCcHHHHHHHHHHHHhccceeeeHhhcccccCCCchHHHHHHHHH
Confidence 68999999999999976643 4567999999999999999999988654431012111111122211 12223333
Q ss_pred HHHHh-------------------cCCCC-------------C---------CCCHH-----HHHHHHHHHh-cCCceeE
Q 007817 248 LLESI-------------------TSTNC-------------D---------FKTLN-----EVQVKLRIIV-DGKKFLL 280 (588)
Q Consensus 248 il~~l-------------------~~~~~-------------~---------~~~~~-----~l~~~l~~~l-~~k~~LL 280 (588)
++.++ +.... + ..... ..+..+.... +.++.++
T Consensus 79 l~~~ll~~~~~~~~~~~~~il~~~g~~~~~~~~vip~L~~i~g~~~~~~el~~~~~~~r~n~~~~~~i~~~~~~~~plVi 158 (849)
T COG3899 79 LMGQLLSESDTRILSWRARLLAALGENGQVIIDVIPELELIIGKRPPALELSPTAAQNRFNLAFLRFIQVFTAEEHPLVI 158 (849)
T ss_pred HHHHHhhccchHHHHHHHHHHHHhcccchhHHhhhHHHHhhcCCCcchhhcccchhHHHHHHHHHHHHHHHHhccCCeEE
Confidence 33333 11100 0 00000 1122233333 3569999
Q ss_pred EeccccccChhHHHHhhcccCCCC----CCcEEEE--eecch--hhhhhccccceeeCCCCCHHHHHHHHHHhhcCCCCC
Q 007817 281 VLDDVWNENYNLWEILKAPFMAGA----RNSKIIV--TTCHS--NVASMMGSVEHYNLKLLSDEYCWSVFVKHAFERRDA 352 (588)
Q Consensus 281 VlDdv~~~~~~~~~~l~~~l~~~~----~gs~ilv--TTR~~--~v~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~ 352 (588)
|+||+++.+....+.+........ ....|.. |.+.. ...........+.|.||+..+...+.........
T Consensus 159 ~leDlhWaD~~SL~lL~~lm~~~~~~~~~~n~v~~~h~~~~~~~~~~~~~~~i~~I~L~PL~~~d~~~lV~~~l~~~~-- 236 (849)
T COG3899 159 VLEDLHWADSASLKLLQLLMDRIAIGAYRDNEVLLLHPLRPTLGEILKSATNITTITLAPLSRADTNQLVAATLGCTK-- 236 (849)
T ss_pred EEecccccChhHHHHHHHHHHhcchhhhhccccccCCCccchhhHHhhcCCceeEEecCcCchhhHHHHHHHHhCCcc--
Confidence 999998888777666544433221 0112332 22222 1112222447899999999999999998874322
Q ss_pred CCChhHHHHHHHHHHHhCCCchHHHHhhhhccCC------CCHHHHHHHHhcccCCCCCcccHHHHHHHHhccCchhHHH
Q 007817 353 GAHQFSKLFRKKIVAKCGGLPLAVSTLGGLLRTR------HTEDAWEEIVSSKMWDLPQQTDILAVLRLSYHYLPSHLKR 426 (588)
Q Consensus 353 ~~~~~~~~i~~~I~~~c~GlPLai~~~~~~L~~~------~~~~~w~~~~~~~~~~~~~~~~i~~~l~~sy~~L~~~~k~ 426 (588)
....+..+.|+++..|+|+.+..+-..+... .....|..=..+ ....+..+.+...+....+.||...|.
T Consensus 237 ---~~~~p~~~~i~~kt~GnPfFi~e~lk~l~~~~~i~f~~~~~~w~~~~~~-i~~~~~~~~vv~~l~~rl~kL~~~t~~ 312 (849)
T COG3899 237 ---LLPAPLLELIFEKTKGNPFFIEEFLKALYEEGLLVFNFDTGAWQCSIAS-LGILATTDAVVEFLAARLQKLPGTTRE 312 (849)
T ss_pred ---cccchHHHHHHHHhcCCCccHHHHHHHHHhCCeeEecCCCcceeccHHh-cCCchhhHHHHHHHHHHHhcCCHHHHH
Confidence 2233446679999999999999999888764 223334321111 111111233666789999999999999
Q ss_pred HHhHhcccCCCceeehhHHHHHHHHcCCcccCCCCCCHHHHHHHHHHHHhhCCcccccc-----CCcCeE---EEchhHH
Q 007817 427 CFTYCAIFPKNYEFEKNELVFLWMGEGMIQQSRTGKLLEDLGNEFFCNPLSRSLFQQSS-----RDVRKF---VMHDLVH 498 (588)
Q Consensus 427 cf~~ls~Fp~~~~i~~~~Li~~W~aeg~i~~~~~~~~~e~~~~~~l~~L~~rsllq~~~-----~~~~~~---~mHdlv~ 498 (588)
.+...|++.. .|+.+.|-..|-. .....+....+.|....++-..+ ...... ..||+++
T Consensus 313 Vl~~AA~iG~--~F~l~~La~l~~~-----------~~~~~a~~l~~al~e~lI~~~~~~yr~~~~~~~~~Y~F~H~~vq 379 (849)
T COG3899 313 VLKAAACIGN--RFDLDTLAALAED-----------SPALEAAALLDALQEGLILPLSETYRFGSNVDIATYKFLHDRVQ 379 (849)
T ss_pred HHHHHHHhCc--cCCHHHHHHHHhh-----------chHHHHHHHHHHhHhhceeccccccccccccchhhHHhhHHHHH
Confidence 9999999964 4567777666521 33455666566665555543221 011222 6788888
Q ss_pred HHHHHH
Q 007817 499 DLAQLV 504 (588)
Q Consensus 499 d~a~~~ 504 (588)
+.|-+.
T Consensus 380 qaaY~~ 385 (849)
T COG3899 380 QAAYNL 385 (849)
T ss_pred HHHhcc
Confidence 887544
No 13
>PF05729 NACHT: NACHT domain
Probab=99.14 E-value=3.5e-10 Score=103.67 Aligned_cols=143 Identities=20% Similarity=0.209 Sum_probs=90.2
Q ss_pred EEEEEEccCCCcHHHHHHHHHccccccccc----ccEEEEEEeCCcccHH---HHHHHHHHHhcCCCCCCCCHHHHHHHH
Q 007817 197 CVIPIVGMAGAGKTMLAREVYNDRAVQNFK----FDVKAWVSVSDDFDVL---RISRALLESITSTNCDFKTLNEVQVKL 269 (588)
Q Consensus 197 ~vv~I~G~gGiGKTtLA~~v~~~~~~~~~~----f~~~~wv~v~~~~~~~---~~~~~il~~l~~~~~~~~~~~~l~~~l 269 (588)
+++.|+|.+|+||||+++.++....... . +...+|++........ .+...|........ ..... .+
T Consensus 1 r~l~I~G~~G~GKStll~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~---~~~~~---~~ 73 (166)
T PF05729_consen 1 RVLWISGEPGSGKSTLLRKLAQQLAEEE-PPPSKFPYPFFFSLRDISDSNNSRSLADLLFDQLPESI---APIEE---LL 73 (166)
T ss_pred CEEEEECCCCCChHHHHHHHHHHHHhcC-cccccceEEEEEeehhhhhccccchHHHHHHHhhccch---hhhHH---HH
Confidence 4789999999999999999998776543 2 4566777776543322 33333333332211 11111 12
Q ss_pred HHH-hcCCceeEEeccccccChh-------HHHHhhc-ccCC-CCCCcEEEEeecchhhh---hhccccceeeCCCCCHH
Q 007817 270 RII-VDGKKFLLVLDDVWNENYN-------LWEILKA-PFMA-GARNSKIIVTTCHSNVA---SMMGSVEHYNLKLLSDE 336 (588)
Q Consensus 270 ~~~-l~~k~~LLVlDdv~~~~~~-------~~~~l~~-~l~~-~~~gs~ilvTTR~~~v~---~~~~~~~~~~l~~L~~~ 336 (588)
... ...++++||||++++.... .+..+.. .+.. ..++++++||+|..... ........+++.+|+++
T Consensus 74 ~~~~~~~~~~llilDglDE~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~liit~r~~~~~~~~~~~~~~~~~~l~~~~~~ 153 (166)
T PF05729_consen 74 QELLEKNKRVLLILDGLDELEEQDQSQERQRLLDLLSQLLPQALPPGVKLIITSRPRAFPDLRRRLKQAQILELEPFSEE 153 (166)
T ss_pred HHHHHcCCceEEEEechHhcccchhhhHHHHHHHHHHHHhhhccCCCCeEEEEEcCChHHHHHHhcCCCcEEEECCCCHH
Confidence 222 2578999999998653321 1222222 2222 24689999999987662 23334468999999999
Q ss_pred HHHHHHHHhh
Q 007817 337 YCWSVFVKHA 346 (588)
Q Consensus 337 ea~~Lf~~~a 346 (588)
+..+++.++.
T Consensus 154 ~~~~~~~~~f 163 (166)
T PF05729_consen 154 DIKQYLRKYF 163 (166)
T ss_pred HHHHHHHHHh
Confidence 9999998764
No 14
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=99.00 E-value=1.3e-07 Score=103.44 Aligned_cols=303 Identities=12% Similarity=0.066 Sum_probs=166.0
Q ss_pred CCceeechhhHHHHHHHHhcCCCCCCCCeEEEEEEccCCCcHHHHHHHHHcccccc--cccc--cEEEEEEeCCcccHHH
Q 007817 168 ERAVYGRDEDKARMLEMVLSDDPTTDANFCVIPIVGMAGAGKTMLAREVYNDRAVQ--NFKF--DVKAWVSVSDDFDVLR 243 (588)
Q Consensus 168 ~~~~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~--~~~f--~~~~wv~v~~~~~~~~ 243 (588)
+..+.|||+|+++|...|...-. +.....++.|+|++|.|||++++.|.+..... .... -.+++|++..-.+...
T Consensus 754 PD~LPhREeEIeeLasfL~paIk-gsgpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINCm~Lstp~s 832 (1164)
T PTZ00112 754 PKYLPCREKEIKEVHGFLESGIK-QSGSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGMNVVHPNA 832 (1164)
T ss_pred CCcCCChHHHHHHHHHHHHHHHh-cCCCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeCCccCCHHH
Confidence 35688999999999999865432 12233578899999999999999998765321 0011 1356788877778888
Q ss_pred HHHHHHHHhcCCCCC-CCCHHHHHHHHHHHh-c--CCceeEEeccccccChhHHHHhhcccC-CCCCCcEEEE--eecch
Q 007817 244 ISRALLESITSTNCD-FKTLNEVQVKLRIIV-D--GKKFLLVLDDVWNENYNLWEILKAPFM-AGARNSKIIV--TTCHS 316 (588)
Q Consensus 244 ~~~~il~~l~~~~~~-~~~~~~l~~~l~~~l-~--~k~~LLVlDdv~~~~~~~~~~l~~~l~-~~~~gs~ilv--TTR~~ 316 (588)
++..|..++....+. .....+....+...+ . +...+||||+++.-....-+.|...+. ....+++|+| +|...
T Consensus 833 IYqvI~qqL~g~~P~~GlsS~evLerLF~~L~k~~r~v~IIILDEID~L~kK~QDVLYnLFR~~~~s~SKLiLIGISNdl 912 (1164)
T PTZ00112 833 AYQVLYKQLFNKKPPNALNSFKILDRLFNQNKKDNRNVSILIIDEIDYLITKTQKVLFTLFDWPTKINSKLVLIAISNTM 912 (1164)
T ss_pred HHHHHHHHHcCCCCCccccHHHHHHHHHhhhhcccccceEEEeehHhhhCccHHHHHHHHHHHhhccCCeEEEEEecCch
Confidence 999999888544332 222233334444433 2 234589999996432111122222221 1123455443 33322
Q ss_pred hhhhh----cc---ccceeeCCCCCHHHHHHHHHHhhcCCCCCCCChhHHHHHHHHHHHhCCCchHHHHhhhhccCC---
Q 007817 317 NVASM----MG---SVEHYNLKLLSDEYCWSVFVKHAFERRDAGAHQFSKLFRKKIVAKCGGLPLAVSTLGGLLRTR--- 386 (588)
Q Consensus 317 ~v~~~----~~---~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~i~~~I~~~c~GlPLai~~~~~~L~~~--- 386 (588)
+.... +. ....+...|++.++-.+++..++-.....-.+..++.+|+.++...|-.=.||.++-.+....
T Consensus 913 DLperLdPRLRSRLg~eeIvF~PYTaEQL~dILk~RAe~A~gVLdDdAIELIArkVAq~SGDARKALDILRrAgEikegs 992 (1164)
T PTZ00112 913 DLPERLIPRCRSRLAFGRLVFSPYKGDEIEKIIKERLENCKEIIDHTAIQLCARKVANVSGDIRKALQICRKAFENKRGQ 992 (1164)
T ss_pred hcchhhhhhhhhccccccccCCCCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHhhhhcCCHHHHHHHHHHHHHhhcCCC
Confidence 21111 11 123477799999999999999885322223344555555555555555666666555444221
Q ss_pred -CCHHHHHHHHhcccCCCCCcccHHHHHHHHhccCchhHHHHHhHhcccCC---CceeehhHHHHHH--HHc--C-Cccc
Q 007817 387 -HTEDAWEEIVSSKMWDLPQQTDILAVLRLSYHYLPSHLKRCFTYCAIFPK---NYEFEKNELVFLW--MGE--G-MIQQ 457 (588)
Q Consensus 387 -~~~~~w~~~~~~~~~~~~~~~~i~~~l~~sy~~L~~~~k~cf~~ls~Fp~---~~~i~~~~Li~~W--~ae--g-~i~~ 457 (588)
-+.+.-..+.... ....+.-....||.+.|..+..+...-+ ...++-..+.... +++ | .+.
T Consensus 993 kVT~eHVrkAleei---------E~srI~e~IktLPlHqKLVLlALIlLlk~tg~~~i~TGEVYerYk~Lce~~Gk~iG- 1062 (1164)
T PTZ00112 993 KIVPRDITEATNQL---------FDSPLTNAINYLPWPFKMFLTCLIVELRMLNDFIIPYKKVLNRYKVLVETSGKYIG- 1062 (1164)
T ss_pred ccCHHHHHHHHHHH---------HhhhHHHHHHcCCHHHHHHHHHHHHHHhhcCCCceeHHHHHHHHHHHHHhhhhhcC-
Confidence 1122222222110 1112334456899887776654433211 2235555554433 333 1 110
Q ss_pred CCCCCCHHHHHHHHHHHHhhCCccccc
Q 007817 458 SRTGKLLEDLGNEFFCNPLSRSLFQQS 484 (588)
Q Consensus 458 ~~~~~~~e~~~~~~l~~L~~rsllq~~ 484 (588)
.....+ ....++.+|...|+|...
T Consensus 1063 --v~plTq-RV~d~L~eL~~LGIIl~e 1086 (1164)
T PTZ00112 1063 --MCSNNE-LFKIMLDKLVKMGILLIR 1086 (1164)
T ss_pred --CCCcHH-HHHHHHHHHHhcCeEEec
Confidence 111223 677788999999988654
No 15
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.85 E-value=1.3e-08 Score=89.29 Aligned_cols=119 Identities=18% Similarity=0.238 Sum_probs=84.7
Q ss_pred CeEEEEEEccCCCcHHHHHHHHHccccccc--ccccEEEEEEeCCcccHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHH
Q 007817 195 NFCVIPIVGMAGAGKTMLAREVYNDRAVQN--FKFDVKAWVSVSDDFDVLRISRALLESITSTNCDFKTLNEVQVKLRII 272 (588)
Q Consensus 195 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~--~~f~~~~wv~v~~~~~~~~~~~~il~~l~~~~~~~~~~~~l~~~l~~~ 272 (588)
+.+++.|+|++|+|||++++.+.++..... ..-..++|+++....+...+...|+.+++.......+..++...+.+.
T Consensus 3 ~~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~~~~~ 82 (131)
T PF13401_consen 3 SQRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKSRQTSDELRSLLIDA 82 (131)
T ss_dssp ----EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSSTS-HHHHHHHHHHH
T ss_pred CCcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccccCCHHHHHHHHHHH
Confidence 347899999999999999999998764210 003456799998888999999999999988765556677777878877
Q ss_pred hcCCc-eeEEecccccc-ChhHHHHhhcccCCCCCCcEEEEeecc
Q 007817 273 VDGKK-FLLVLDDVWNE-NYNLWEILKAPFMAGARNSKIIVTTCH 315 (588)
Q Consensus 273 l~~k~-~LLVlDdv~~~-~~~~~~~l~~~l~~~~~gs~ilvTTR~ 315 (588)
+...+ .+||+|+++.- +...++.+..... ..+.++|+..+.
T Consensus 83 l~~~~~~~lviDe~~~l~~~~~l~~l~~l~~--~~~~~vvl~G~~ 125 (131)
T PF13401_consen 83 LDRRRVVLLVIDEADHLFSDEFLEFLRSLLN--ESNIKVVLVGTP 125 (131)
T ss_dssp HHHCTEEEEEEETTHHHHTHHHHHHHHHHTC--SCBEEEEEEESS
T ss_pred HHhcCCeEEEEeChHhcCCHHHHHHHHHHHh--CCCCeEEEEECh
Confidence 76554 59999999766 5556666655443 567778777754
No 16
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=98.83 E-value=2.1e-08 Score=100.02 Aligned_cols=219 Identities=18% Similarity=0.214 Sum_probs=120.6
Q ss_pred CCCceeechhhHHHHHHHHhcCCCCCCCCeEEEEEEccCCCcHHHHHHHHHcccccccccccEEEEEEeCCcccHHHHHH
Q 007817 167 TERAVYGRDEDKARMLEMVLSDDPTTDANFCVIPIVGMAGAGKTMLAREVYNDRAVQNFKFDVKAWVSVSDDFDVLRISR 246 (588)
Q Consensus 167 ~~~~~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~ 246 (588)
.+.+++|-...+.++++ + +.+....+||++|+||||||+.+...... .| ..++...+-.+
T Consensus 28 GQ~HLlg~~~~lrr~v~---~------~~l~SmIl~GPPG~GKTTlA~liA~~~~~---~f-----~~~sAv~~gvk--- 87 (436)
T COG2256 28 GQEHLLGEGKPLRRAVE---A------GHLHSMILWGPPGTGKTTLARLIAGTTNA---AF-----EALSAVTSGVK--- 87 (436)
T ss_pred ChHhhhCCCchHHHHHh---c------CCCceeEEECCCCCCHHHHHHHHHHhhCC---ce-----EEeccccccHH---
Confidence 34455555555555443 2 35678889999999999999999984432 33 22222222111
Q ss_pred HHHHHhcCCCCCCCCHHHHHHHH-HHHhcCCceeEEeccccccChhHHHHhhcccCCCCCCcEEEE--eecchhhhh---
Q 007817 247 ALLESITSTNCDFKTLNEVQVKL-RIIVDGKKFLLVLDDVWNENYNLWEILKAPFMAGARNSKIIV--TTCHSNVAS--- 320 (588)
Q Consensus 247 ~il~~l~~~~~~~~~~~~l~~~l-~~~l~~k~~LLVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilv--TTR~~~v~~--- 320 (588)
++.+..+.- +....|++.+|++|.|+.-+..+-+.+ ||.-.+|.-|+| ||.++...-
T Consensus 88 --------------dlr~i~e~a~~~~~~gr~tiLflDEIHRfnK~QQD~l---Lp~vE~G~iilIGATTENPsF~ln~A 150 (436)
T COG2256 88 --------------DLREIIEEARKNRLLGRRTILFLDEIHRFNKAQQDAL---LPHVENGTIILIGATTENPSFELNPA 150 (436)
T ss_pred --------------HHHHHHHHHHHHHhcCCceEEEEehhhhcChhhhhhh---hhhhcCCeEEEEeccCCCCCeeecHH
Confidence 122222222 223358999999999988776555554 344455776776 455543321
Q ss_pred hccccceeeCCCCCHHHHHHHHHHhhcCCCC-CC-CCh-hHHHHHHHHHHHhCCCchHHHHh----hhhccCCC--CHHH
Q 007817 321 MMGSVEHYNLKLLSDEYCWSVFVKHAFERRD-AG-AHQ-FSKLFRKKIVAKCGGLPLAVSTL----GGLLRTRH--TEDA 391 (588)
Q Consensus 321 ~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~-~~-~~~-~~~~i~~~I~~~c~GlPLai~~~----~~~L~~~~--~~~~ 391 (588)
......++.+++|+.++-.+++.+.+..... .. ... ..++....|+..++|---++-.. ..+-+... ..+.
T Consensus 151 LlSR~~vf~lk~L~~~di~~~l~ra~~~~~rgl~~~~~~i~~~a~~~l~~~s~GD~R~aLN~LE~~~~~~~~~~~~~~~~ 230 (436)
T COG2256 151 LLSRARVFELKPLSSEDIKKLLKRALLDEERGLGGQIIVLDEEALDYLVRLSNGDARRALNLLELAALSAEPDEVLILEL 230 (436)
T ss_pred HhhhhheeeeecCCHHHHHHHHHHHHhhhhcCCCcccccCCHHHHHHHHHhcCchHHHHHHHHHHHHHhcCCCcccCHHH
Confidence 1235578999999999999999984322111 11 011 12334566888888865443222 22222221 3455
Q ss_pred HHHHHhcccCCCCC----cccHHHHHHHHhccCch
Q 007817 392 WEEIVSSKMWDLPQ----QTDILAVLRLSYHYLPS 422 (588)
Q Consensus 392 w~~~~~~~~~~~~~----~~~i~~~l~~sy~~L~~ 422 (588)
.+++++........ .-++..+|.-|...=++
T Consensus 231 l~~~l~~~~~~~Dk~gD~hYdliSA~hKSvRGSD~ 265 (436)
T COG2256 231 LEEILQRRSARFDKDGDAHYDLISALHKSVRGSDP 265 (436)
T ss_pred HHHHHhhhhhccCCCcchHHHHHHHHHHhhccCCc
Confidence 55555543322222 23455556666554433
No 17
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=98.82 E-value=4.8e-07 Score=98.47 Aligned_cols=195 Identities=16% Similarity=0.162 Sum_probs=116.7
Q ss_pred CceeechhhHHHHHHHHhcCCCCCCCCeEEEEEEccCCCcHHHHHHHHHcccccccccccEEEEEEeCCcccHHHHHHHH
Q 007817 169 RAVYGRDEDKARMLEMVLSDDPTTDANFCVIPIVGMAGAGKTMLAREVYNDRAVQNFKFDVKAWVSVSDDFDVLRISRAL 248 (588)
Q Consensus 169 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i 248 (588)
.++||.+..++.|.+++.... -...+.++|..|+||||+|+.+.+...... .++. ..+..-...+.|
T Consensus 16 dEVIGQe~Vv~~L~~aL~~gR-----L~HAyLFtGPpGvGKTTlAriLAKaLnCe~-~~~~-------~PCG~C~sCr~I 82 (830)
T PRK07003 16 ASLVGQEHVVRALTHALDGGR-----LHHAYLFTGTRGVGKTTLSRIFAKALNCET-GVTS-------QPCGVCRACREI 82 (830)
T ss_pred HHHcCcHHHHHHHHHHHhcCC-----CCeEEEEECCCCCCHHHHHHHHHHHhcCcc-CCCC-------CCCcccHHHHHH
Confidence 468999999999999986542 245667999999999999998887653221 1100 000100111111
Q ss_pred HHH-----hcCCCCCCCCHHHHHHHHHHH----hcCCceeEEeccccccChhHHHHhhcccCCCCCCcEEEEeecchhhh
Q 007817 249 LES-----ITSTNCDFKTLNEVQVKLRII----VDGKKFLLVLDDVWNENYNLWEILKAPFMAGARNSKIIVTTCHSNVA 319 (588)
Q Consensus 249 l~~-----l~~~~~~~~~~~~l~~~l~~~----l~~k~~LLVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTTR~~~v~ 319 (588)
... +..........+++...+... ..++.-++|||+++..+...++.|+..+.......++|+||.+..-.
T Consensus 83 ~~G~h~DviEIDAas~rgVDdIReLIe~a~~~P~~gr~KVIIIDEah~LT~~A~NALLKtLEEPP~~v~FILaTtd~~KI 162 (830)
T PRK07003 83 DEGRFVDYVEMDAASNRGVDEMAALLERAVYAPVDARFKVYMIDEVHMLTNHAFNAMLKTLEEPPPHVKFILATTDPQKI 162 (830)
T ss_pred hcCCCceEEEecccccccHHHHHHHHHHHHhccccCCceEEEEeChhhCCHHHHHHHHHHHHhcCCCeEEEEEECChhhc
Confidence 100 000000111222222222221 12455589999999888788888888877666678888877765332
Q ss_pred -hh-ccccceeeCCCCCHHHHHHHHHHhhcCCCCCCCChhHHHHHHHHHHHhCCCc-hHHHHhh
Q 007817 320 -SM-MGSVEHYNLKLLSDEYCWSVFVKHAFERRDAGAHQFSKLFRKKIVAKCGGLP-LAVSTLG 380 (588)
Q Consensus 320 -~~-~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~i~~~I~~~c~GlP-Lai~~~~ 380 (588)
.. ......+.+++++.++..+.+.+.+...+.. ...+....|++.++|.. -|+.++-
T Consensus 163 p~TIrSRCq~f~Fk~Ls~eeIv~~L~~Il~~EgI~----id~eAL~lIA~~A~GsmRdALsLLd 222 (830)
T PRK07003 163 PVTVLSRCLQFNLKQMPAGHIVSHLERILGEERIA----FEPQALRLLARAAQGSMRDALSLTD 222 (830)
T ss_pred cchhhhheEEEecCCcCHHHHHHHHHHHHHHcCCC----CCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 22 2234679999999999999998876432221 12333567999998865 4555533
No 18
>PRK13342 recombination factor protein RarA; Reviewed
Probab=98.81 E-value=4.1e-08 Score=103.66 Aligned_cols=179 Identities=18% Similarity=0.228 Sum_probs=106.2
Q ss_pred CceeechhhHHH---HHHHHhcCCCCCCCCeEEEEEEccCCCcHHHHHHHHHcccccccccccEEEEEEeCCcccHHHHH
Q 007817 169 RAVYGRDEDKAR---MLEMVLSDDPTTDANFCVIPIVGMAGAGKTMLAREVYNDRAVQNFKFDVKAWVSVSDDFDVLRIS 245 (588)
Q Consensus 169 ~~~vGR~~e~~~---l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~ 245 (588)
.+++|++..+.. +.+++... ....+.|+|++|+||||||+.+++.... .| +.++.......-+
T Consensus 12 ~d~vGq~~~v~~~~~L~~~i~~~------~~~~ilL~GppGtGKTtLA~~ia~~~~~---~~-----~~l~a~~~~~~~i 77 (413)
T PRK13342 12 DEVVGQEHLLGPGKPLRRMIEAG------RLSSMILWGPPGTGKTTLARIIAGATDA---PF-----EALSAVTSGVKDL 77 (413)
T ss_pred HHhcCcHHHhCcchHHHHHHHcC------CCceEEEECCCCCCHHHHHHHHHHHhCC---CE-----EEEecccccHHHH
Confidence 357888776555 77776543 3457888999999999999999885432 22 2222111111111
Q ss_pred HHHHHHhcCCCCCCCCHHHHHHHHHHH-hcCCceeEEeccccccChhHHHHhhcccCCCCCCcEEEE--eecchhh--hh
Q 007817 246 RALLESITSTNCDFKTLNEVQVKLRII-VDGKKFLLVLDDVWNENYNLWEILKAPFMAGARNSKIIV--TTCHSNV--AS 320 (588)
Q Consensus 246 ~~il~~l~~~~~~~~~~~~l~~~l~~~-l~~k~~LLVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilv--TTR~~~v--~~ 320 (588)
+.++. ..... ..+++.+|+||+++..+....+.+...+.. |..+++ ||.+... ..
T Consensus 78 r~ii~-----------------~~~~~~~~g~~~vL~IDEi~~l~~~~q~~LL~~le~---~~iilI~att~n~~~~l~~ 137 (413)
T PRK13342 78 REVIE-----------------EARQRRSAGRRTILFIDEIHRFNKAQQDALLPHVED---GTITLIGATTENPSFEVNP 137 (413)
T ss_pred HHHHH-----------------HHHHhhhcCCceEEEEechhhhCHHHHHHHHHHhhc---CcEEEEEeCCCChhhhccH
Confidence 22221 11111 246788999999988766666666555432 444444 3343321 11
Q ss_pred -hccccceeeCCCCCHHHHHHHHHHhhcCCCCCCCChhHHHHHHHHHHHhCCCchHHHHhhhh
Q 007817 321 -MMGSVEHYNLKLLSDEYCWSVFVKHAFERRDAGAHQFSKLFRKKIVAKCGGLPLAVSTLGGL 382 (588)
Q Consensus 321 -~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~i~~~I~~~c~GlPLai~~~~~~ 382 (588)
.......+.+.+++.++...++.+.+..... .......+..+.|++.|+|.|..+..+...
T Consensus 138 aL~SR~~~~~~~~ls~e~i~~lL~~~l~~~~~-~~i~i~~~al~~l~~~s~Gd~R~aln~Le~ 199 (413)
T PRK13342 138 ALLSRAQVFELKPLSEEDIEQLLKRALEDKER-GLVELDDEALDALARLANGDARRALNLLEL 199 (413)
T ss_pred HHhccceeeEeCCCCHHHHHHHHHHHHHHhhc-CCCCCCHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 1223467999999999999999886532111 000222344667999999999876555433
No 19
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=98.80 E-value=1e-08 Score=95.79 Aligned_cols=51 Identities=24% Similarity=0.385 Sum_probs=35.3
Q ss_pred ceeechhhHHHHHHHHhcCCCCCCCCeEEEEEEccCCCcHHHHHHHHHcccccc
Q 007817 170 AVYGRDEDKARMLEMVLSDDPTTDANFCVIPIVGMAGAGKTMLAREVYNDRAVQ 223 (588)
Q Consensus 170 ~~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 223 (588)
.|+||+++++++...|... .....+++.|+|++|+|||+|.+.++......
T Consensus 1 ~fvgR~~e~~~l~~~l~~~---~~~~~~~~ll~G~~G~GKT~ll~~~~~~~~~~ 51 (185)
T PF13191_consen 1 QFVGREEEIERLRDLLDAA---QSGSPRNLLLTGESGSGKTSLLRALLDRLAER 51 (185)
T ss_dssp --TT-HHHHHHHHHTTGGT---SS-----EEE-B-TTSSHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHH---HcCCCcEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 4899999999999999522 23466899999999999999999999877654
No 20
>PRK06893 DNA replication initiation factor; Validated
Probab=98.77 E-value=4.2e-08 Score=94.88 Aligned_cols=155 Identities=20% Similarity=0.203 Sum_probs=94.1
Q ss_pred EEEEEEccCCCcHHHHHHHHHcccccccccccEEEEEEeCCcccHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhcCC
Q 007817 197 CVIPIVGMAGAGKTMLAREVYNDRAVQNFKFDVKAWVSVSDDFDVLRISRALLESITSTNCDFKTLNEVQVKLRIIVDGK 276 (588)
Q Consensus 197 ~vv~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~il~~l~~~~~~~~~~~~l~~~l~~~l~~k 276 (588)
+.+.|+|++|+|||+|++.+++....++ ..+.|+++.... ..... +.+.+. +
T Consensus 40 ~~l~l~G~~G~GKThL~~ai~~~~~~~~---~~~~y~~~~~~~---~~~~~---------------------~~~~~~-~ 91 (229)
T PRK06893 40 PFFYIWGGKSSGKSHLLKAVSNHYLLNQ---RTAIYIPLSKSQ---YFSPA---------------------VLENLE-Q 91 (229)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcC---CCeEEeeHHHhh---hhhHH---------------------HHhhcc-c
Confidence 5789999999999999999999754432 234566653210 00001 111111 3
Q ss_pred ceeEEeccccccC-hhHHHH-hhcccCCC-CCCcEEEE-eecc---------hhhhhhccccceeeCCCCCHHHHHHHHH
Q 007817 277 KFLLVLDDVWNEN-YNLWEI-LKAPFMAG-ARNSKIIV-TTCH---------SNVASMMGSVEHYNLKLLSDEYCWSVFV 343 (588)
Q Consensus 277 ~~LLVlDdv~~~~-~~~~~~-l~~~l~~~-~~gs~ilv-TTR~---------~~v~~~~~~~~~~~l~~L~~~ea~~Lf~ 343 (588)
.-+|+|||+|... ...|+. +...+... ..|..+|| |+.. +.+...+.....++++++++++.++++.
T Consensus 92 ~dlLilDDi~~~~~~~~~~~~l~~l~n~~~~~~~~illits~~~p~~l~~~~~~L~sRl~~g~~~~l~~pd~e~~~~iL~ 171 (229)
T PRK06893 92 QDLVCLDDLQAVIGNEEWELAIFDLFNRIKEQGKTLLLISADCSPHALSIKLPDLASRLTWGEIYQLNDLTDEQKIIVLQ 171 (229)
T ss_pred CCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCcEEEEeCCCChHHccccchhHHHHHhcCCeeeCCCCCHHHHHHHHH
Confidence 4599999998642 234543 33323221 23555654 4443 2444444556789999999999999999
Q ss_pred HhhcCCCCCCCChhHHHHHHHHHHHhCCCchHHHHhhhhc
Q 007817 344 KHAFERRDAGAHQFSKLFRKKIVAKCGGLPLAVSTLGGLL 383 (588)
Q Consensus 344 ~~a~~~~~~~~~~~~~~i~~~I~~~c~GlPLai~~~~~~L 383 (588)
+.+...+. .. ..++..-|++.+.|..-.+..+-..|
T Consensus 172 ~~a~~~~l-~l---~~~v~~~L~~~~~~d~r~l~~~l~~l 207 (229)
T PRK06893 172 RNAYQRGI-EL---SDEVANFLLKRLDRDMHTLFDALDLL 207 (229)
T ss_pred HHHHHcCC-CC---CHHHHHHHHHhccCCHHHHHHHHHHH
Confidence 98864332 12 23345568888888777766555444
No 21
>PRK04195 replication factor C large subunit; Provisional
Probab=98.75 E-value=1e-06 Score=94.98 Aligned_cols=247 Identities=15% Similarity=0.128 Sum_probs=141.1
Q ss_pred CceeechhhHHHHHHHHhcCCCCCCCCeEEEEEEccCCCcHHHHHHHHHcccccccccccEEEEEEeCCcccHHHHHHHH
Q 007817 169 RAVYGRDEDKARMLEMVLSDDPTTDANFCVIPIVGMAGAGKTMLAREVYNDRAVQNFKFDVKAWVSVSDDFDVLRISRAL 248 (588)
Q Consensus 169 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i 248 (588)
.+++|.+..++.+.+|+..... +...+.+.|+|++|+||||+|+.+++... |+. +-++.++..+.. .+..+
T Consensus 14 ~dlvg~~~~~~~l~~~l~~~~~--g~~~~~lLL~GppG~GKTtla~ala~el~-----~~~-ielnasd~r~~~-~i~~~ 84 (482)
T PRK04195 14 SDVVGNEKAKEQLREWIESWLK--GKPKKALLLYGPPGVGKTSLAHALANDYG-----WEV-IELNASDQRTAD-VIERV 84 (482)
T ss_pred HHhcCCHHHHHHHHHHHHHHhc--CCCCCeEEEECCCCCCHHHHHHHHHHHcC-----CCE-EEEcccccccHH-HHHHH
Confidence 4689999999999999875431 12367899999999999999999998652 222 223444432222 22233
Q ss_pred HHHhcCCCCCCCCHHHHHHHHHHHhcCCceeEEeccccccCh----hHHHHhhcccCCCCCCcEEEEeecchh-hhh-hc
Q 007817 249 LESITSTNCDFKTLNEVQVKLRIIVDGKKFLLVLDDVWNENY----NLWEILKAPFMAGARNSKIIVTTCHSN-VAS-MM 322 (588)
Q Consensus 249 l~~l~~~~~~~~~~~~l~~~l~~~l~~k~~LLVlDdv~~~~~----~~~~~l~~~l~~~~~gs~ilvTTR~~~-v~~-~~ 322 (588)
+....... .....++-+||||+++.... ..+..+...+.. .+..||+|+.+.. ... .+
T Consensus 85 i~~~~~~~--------------sl~~~~~kvIiIDEaD~L~~~~d~~~~~aL~~~l~~--~~~~iIli~n~~~~~~~k~L 148 (482)
T PRK04195 85 AGEAATSG--------------SLFGARRKLILLDEVDGIHGNEDRGGARAILELIKK--AKQPIILTANDPYDPSLREL 148 (482)
T ss_pred HHHhhccC--------------cccCCCCeEEEEecCcccccccchhHHHHHHHHHHc--CCCCEEEeccCccccchhhH
Confidence 22221110 00113677999999976432 334555544442 2345666664432 111 11
Q ss_pred -cccceeeCCCCCHHHHHHHHHHhhcCCCCCCCChhHHHHHHHHHHHhCCCchHHHHhhhhccCC---CCHHHHHHHHhc
Q 007817 323 -GSVEHYNLKLLSDEYCWSVFVKHAFERRDAGAHQFSKLFRKKIVAKCGGLPLAVSTLGGLLRTR---HTEDAWEEIVSS 398 (588)
Q Consensus 323 -~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~i~~~I~~~c~GlPLai~~~~~~L~~~---~~~~~w~~~~~~ 398 (588)
.....+++.+++.++....+.+.+...+.. .+ .+....|++.++|..-.+......+... .+.+....+...
T Consensus 149 rsr~~~I~f~~~~~~~i~~~L~~i~~~egi~-i~---~eaL~~Ia~~s~GDlR~ain~Lq~~a~~~~~it~~~v~~~~~~ 224 (482)
T PRK04195 149 RNACLMIEFKRLSTRSIVPVLKRICRKEGIE-CD---DEALKEIAERSGGDLRSAINDLQAIAEGYGKLTLEDVKTLGRR 224 (482)
T ss_pred hccceEEEecCCCHHHHHHHHHHHHHHcCCC-CC---HHHHHHHHHHcCCCHHHHHHHHHHHhcCCCCCcHHHHHHhhcC
Confidence 234679999999999999888776433222 22 2345679999999776665444333332 233333333211
Q ss_pred ccCCCCCcccHHHHHHHHhc-cCchhHHHHHhHhcccCCCceeehhHHHHHHHHcCCccc
Q 007817 399 KMWDLPQQTDILAVLRLSYH-YLPSHLKRCFTYCAIFPKNYEFEKNELVFLWMGEGMIQQ 457 (588)
Q Consensus 399 ~~~~~~~~~~i~~~l~~sy~-~L~~~~k~cf~~ls~Fp~~~~i~~~~Li~~W~aeg~i~~ 457 (588)
....+++.++..-+. .-+......+..+. ++. ..+-.|+.|.+...
T Consensus 225 -----d~~~~if~~l~~i~~~k~~~~a~~~~~~~~-------~~~-~~i~~~l~en~~~~ 271 (482)
T PRK04195 225 -----DREESIFDALDAVFKARNADQALEASYDVD-------EDP-DDLIEWIDENIPKE 271 (482)
T ss_pred -----CCCCCHHHHHHHHHCCCCHHHHHHHHHccc-------CCH-HHHHHHHHhccccc
Confidence 113467777776665 33333333332222 232 35678999998764
No 22
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=98.74 E-value=4e-07 Score=92.59 Aligned_cols=180 Identities=17% Similarity=0.210 Sum_probs=119.4
Q ss_pred CceeechhhHHHHHHHHhcCCCCCCCCeEEEEEEccCCCcHHHHHHHHHcccc----cccccccEEEEEEe-CCcccHHH
Q 007817 169 RAVYGRDEDKARMLEMVLSDDPTTDANFCVIPIVGMAGAGKTMLAREVYNDRA----VQNFKFDVKAWVSV-SDDFDVLR 243 (588)
Q Consensus 169 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~----~~~~~f~~~~wv~v-~~~~~~~~ 243 (588)
.+++|-+.-++.+.+++.... -.....++|+.|+||||+|+.+++..- ... |+|...|... +....+.+
T Consensus 4 ~~i~g~~~~~~~l~~~~~~~~-----~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~-h~D~~~~~~~~~~~i~v~~ 77 (313)
T PRK05564 4 HTIIGHENIKNRIKNSIIKNR-----FSHAHIIVGEDGIGKSLLAKEIALKILGKSQQRE-YVDIIEFKPINKKSIGVDD 77 (313)
T ss_pred hhccCcHHHHHHHHHHHHcCC-----CCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCC-CCCeEEeccccCCCCCHHH
Confidence 357888888899999986543 346788999999999999999987542 223 6676666542 22222222
Q ss_pred HHHHHHHHhcCCCCCCCCHHHHHHHHHHHhcCCceeEEeccccccChhHHHHhhcccCCCCCCcEEEEeecchhhh-hh-
Q 007817 244 ISRALLESITSTNCDFKTLNEVQVKLRIIVDGKKFLLVLDDVWNENYNLWEILKAPFMAGARNSKIIVTTCHSNVA-SM- 321 (588)
Q Consensus 244 ~~~~il~~l~~~~~~~~~~~~l~~~l~~~l~~k~~LLVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTTR~~~v~-~~- 321 (588)
.+++.+.+...+ ..+++=++|+|+++..+...++.+...+.....++.+|++|.+.+.. ..
T Consensus 78 -ir~~~~~~~~~p----------------~~~~~kv~iI~~ad~m~~~a~naLLK~LEepp~~t~~il~~~~~~~ll~TI 140 (313)
T PRK05564 78 -IRNIIEEVNKKP----------------YEGDKKVIIIYNSEKMTEQAQNAFLKTIEEPPKGVFIILLCENLEQILDTI 140 (313)
T ss_pred -HHHHHHHHhcCc----------------ccCCceEEEEechhhcCHHHHHHHHHHhcCCCCCeEEEEEeCChHhCcHHH
Confidence 222333222111 12456678888887777788999999998877889998888665432 11
Q ss_pred ccccceeeCCCCCHHHHHHHHHHhhcCCCCCCCChhHHHHHHHHHHHhCCCchHHHHh
Q 007817 322 MGSVEHYNLKLLSDEYCWSVFVKHAFERRDAGAHQFSKLFRKKIVAKCGGLPLAVSTL 379 (588)
Q Consensus 322 ~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~i~~~I~~~c~GlPLai~~~ 379 (588)
......+++.++++++....+.+...+ .+ ...+..++..++|.|.-+...
T Consensus 141 ~SRc~~~~~~~~~~~~~~~~l~~~~~~-----~~---~~~~~~l~~~~~g~~~~a~~~ 190 (313)
T PRK05564 141 KSRCQIYKLNRLSKEEIEKFISYKYND-----IK---EEEKKSAIAFSDGIPGKVEKF 190 (313)
T ss_pred HhhceeeeCCCcCHHHHHHHHHHHhcC-----CC---HHHHHHHHHHcCCCHHHHHHH
Confidence 223468999999999998888665311 11 122557889999998765433
No 23
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.72 E-value=4.2e-07 Score=94.22 Aligned_cols=193 Identities=15% Similarity=0.163 Sum_probs=112.2
Q ss_pred CceeechhhHHHHHHHHhcCCCCCCCCeEEEEEEccCCCcHHHHHHHHHcccccccccccEEEEEEeCCcccHHHHHHHH
Q 007817 169 RAVYGRDEDKARMLEMVLSDDPTTDANFCVIPIVGMAGAGKTMLAREVYNDRAVQNFKFDVKAWVSVSDDFDVLRISRAL 248 (588)
Q Consensus 169 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i 248 (588)
.+++|.+.-++.+.+.+.... -...+.++|+.|+||||+|+.+++...... ... ..+...-....++
T Consensus 16 ~~iiGq~~~~~~l~~~~~~~~-----~~h~~L~~Gp~G~GKTtla~~la~~l~c~~-~~~-------~~pc~~c~~c~~~ 82 (363)
T PRK14961 16 RDIIGQKHIVTAISNGLSLGR-----IHHAWLLSGTRGVGKTTIARLLAKSLNCQN-GIT-------SNPCRKCIICKEI 82 (363)
T ss_pred hhccChHHHHHHHHHHHHcCC-----CCeEEEEecCCCCCHHHHHHHHHHHhcCCC-CCC-------CCCCCCCHHHHHH
Confidence 468999999999999886542 345778999999999999999988653211 000 0000000001111
Q ss_pred HHHhcC-----CCCCCCCHHHHHHHHHHH----hcCCceeEEeccccccChhHHHHhhcccCCCCCCcEEEEeecch-hh
Q 007817 249 LESITS-----TNCDFKTLNEVQVKLRII----VDGKKFLLVLDDVWNENYNLWEILKAPFMAGARNSKIIVTTCHS-NV 318 (588)
Q Consensus 249 l~~l~~-----~~~~~~~~~~l~~~l~~~----l~~k~~LLVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTTR~~-~v 318 (588)
...... ........++....+... ..+++-++|+|+++..+...++.+...+.......++|++|.+. .+
T Consensus 83 ~~~~~~d~~~~~~~~~~~v~~ir~i~~~~~~~p~~~~~kviIIDEa~~l~~~a~naLLk~lEe~~~~~~fIl~t~~~~~l 162 (363)
T PRK14961 83 EKGLCLDLIEIDAASRTKVEEMREILDNIYYSPSKSRFKVYLIDEVHMLSRHSFNALLKTLEEPPQHIKFILATTDVEKI 162 (363)
T ss_pred hcCCCCceEEecccccCCHHHHHHHHHHHhcCcccCCceEEEEEChhhcCHHHHHHHHHHHhcCCCCeEEEEEcCChHhh
Confidence 110000 000001122222111111 12445699999998877667887877776655667777766543 23
Q ss_pred hhh-ccccceeeCCCCCHHHHHHHHHHhhcCCCCCCCChhHHHHHHHHHHHhCCCchHHHH
Q 007817 319 ASM-MGSVEHYNLKLLSDEYCWSVFVKHAFERRDAGAHQFSKLFRKKIVAKCGGLPLAVST 378 (588)
Q Consensus 319 ~~~-~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~i~~~I~~~c~GlPLai~~ 378 (588)
... .+....+++.+++.++..+.+...+...+.. ...+....|++.++|.|-.+..
T Consensus 163 ~~tI~SRc~~~~~~~l~~~el~~~L~~~~~~~g~~----i~~~al~~ia~~s~G~~R~al~ 219 (363)
T PRK14961 163 PKTILSRCLQFKLKIISEEKIFNFLKYILIKESID----TDEYALKLIAYHAHGSMRDALN 219 (363)
T ss_pred hHHHHhhceEEeCCCCCHHHHHHHHHHHHHHcCCC----CCHHHHHHHHHHcCCCHHHHHH
Confidence 222 2234689999999999999888766332211 1223456689999998864433
No 24
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=98.72 E-value=1.2e-07 Score=91.70 Aligned_cols=172 Identities=13% Similarity=0.056 Sum_probs=100.9
Q ss_pred chhhHHHHHHHHhcCCCCCCCCeEEEEEEccCCCcHHHHHHHHHcccccccccccEEEEEEeCCcccHHHHHHHHHHHhc
Q 007817 174 RDEDKARMLEMVLSDDPTTDANFCVIPIVGMAGAGKTMLAREVYNDRAVQNFKFDVKAWVSVSDDFDVLRISRALLESIT 253 (588)
Q Consensus 174 R~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~il~~l~ 253 (588)
.+..++.+.+++... ....+.|+|++|+|||+||+.+++..... ....++++++.-.+. ...+
T Consensus 22 ~~~~~~~l~~~~~~~------~~~~lll~G~~G~GKT~la~~~~~~~~~~---~~~~~~i~~~~~~~~---~~~~----- 84 (226)
T TIGR03420 22 NAELLAALRQLAAGK------GDRFLYLWGESGSGKSHLLQAACAAAEER---GKSAIYLPLAELAQA---DPEV----- 84 (226)
T ss_pred cHHHHHHHHHHHhcC------CCCeEEEECCCCCCHHHHHHHHHHHHHhc---CCcEEEEeHHHHHHh---HHHH-----
Confidence 344667777765422 34688999999999999999999865432 223455655432110 0011
Q ss_pred CCCCCCCCHHHHHHHHHHHhcCCceeEEeccccccChh-H-HHHhhcccCC-CCCCcEEEEeecchhh---------hhh
Q 007817 254 STNCDFKTLNEVQVKLRIIVDGKKFLLVLDDVWNENYN-L-WEILKAPFMA-GARNSKIIVTTCHSNV---------ASM 321 (588)
Q Consensus 254 ~~~~~~~~~~~l~~~l~~~l~~k~~LLVlDdv~~~~~~-~-~~~l~~~l~~-~~~gs~ilvTTR~~~v---------~~~ 321 (588)
...+.+ .-+|||||++..... . .+.+...+.. ...+..+|+||+.... ...
T Consensus 85 ----------------~~~~~~-~~lLvIDdi~~l~~~~~~~~~L~~~l~~~~~~~~~iIits~~~~~~~~~~~~~L~~r 147 (226)
T TIGR03420 85 ----------------LEGLEQ-ADLVCLDDVEAIAGQPEWQEALFHLYNRVREAGGRLLIAGRAAPAQLPLRLPDLRTR 147 (226)
T ss_pred ----------------Hhhccc-CCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCeEEEECCCChHHCCcccHHHHHH
Confidence 111222 348999999754322 2 2334333322 1234578888875321 111
Q ss_pred ccccceeeCCCCCHHHHHHHHHHhhcCCCCCCCChhHHHHHHHHHHHhCCCchHHHHhhhhc
Q 007817 322 MGSVEHYNLKLLSDEYCWSVFVKHAFERRDAGAHQFSKLFRKKIVAKCGGLPLAVSTLGGLL 383 (588)
Q Consensus 322 ~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~i~~~I~~~c~GlPLai~~~~~~L 383 (588)
+.....+++.+++.++...++...+..... .. ..+..+.|++.+.|+|..+..+...+
T Consensus 148 ~~~~~~i~l~~l~~~e~~~~l~~~~~~~~~-~~---~~~~l~~L~~~~~gn~r~L~~~l~~~ 205 (226)
T TIGR03420 148 LAWGLVFQLPPLSDEEKIAALQSRAARRGL-QL---PDEVADYLLRHGSRDMGSLMALLDAL 205 (226)
T ss_pred HhcCeeEecCCCCHHHHHHHHHHHHHHcCC-CC---CHHHHHHHHHhccCCHHHHHHHHHHH
Confidence 222357999999999999999876532221 11 22334568888999998887765443
No 25
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=98.69 E-value=5.1e-07 Score=93.05 Aligned_cols=199 Identities=15% Similarity=0.112 Sum_probs=111.4
Q ss_pred CceeechhhHHHHHHHHhcCCCCCCCCeEEEEEEccCCCcHHHHHHHHHccccccccccc-EEEEEEeCCcccHH-HHHH
Q 007817 169 RAVYGRDEDKARMLEMVLSDDPTTDANFCVIPIVGMAGAGKTMLAREVYNDRAVQNFKFD-VKAWVSVSDDFDVL-RISR 246 (588)
Q Consensus 169 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~~f~-~~~wv~v~~~~~~~-~~~~ 246 (588)
..++|++..++.+..++..+ ..+.+.|+|++|+||||+|+.+.+..... .+. ..+.+++++..+.. ..+.
T Consensus 15 ~~~~g~~~~~~~L~~~~~~~------~~~~lll~Gp~GtGKT~la~~~~~~l~~~--~~~~~~~~i~~~~~~~~~~~~~~ 86 (337)
T PRK12402 15 EDILGQDEVVERLSRAVDSP------NLPHLLVQGPPGSGKTAAVRALARELYGD--PWENNFTEFNVADFFDQGKKYLV 86 (337)
T ss_pred HHhcCCHHHHHHHHHHHhCC------CCceEEEECCCCCCHHHHHHHHHHHhcCc--ccccceEEechhhhhhcchhhhh
Confidence 46889999999999988643 23457899999999999999998865322 222 23444443211000 0000
Q ss_pred ---HHHHHhcCC-CCCCCCHHHHHHHHHHHh-----cCCceeEEeccccccChhHHHHhhcccCCCCCCcEEEEeecchh
Q 007817 247 ---ALLESITST-NCDFKTLNEVQVKLRIIV-----DGKKFLLVLDDVWNENYNLWEILKAPFMAGARNSKIIVTTCHSN 317 (588)
Q Consensus 247 ---~il~~l~~~-~~~~~~~~~l~~~l~~~l-----~~k~~LLVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTTR~~~ 317 (588)
.....+... .......+.....++... .+.+-+||+||+..........+...+......+++|+||....
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDe~~~l~~~~~~~L~~~le~~~~~~~~Il~~~~~~ 166 (337)
T PRK12402 87 EDPRFAHFLGTDKRIRSSKIDNFKHVLKEYASYRPLSADYKTILLDNAEALREDAQQALRRIMEQYSRTCRFIIATRQPS 166 (337)
T ss_pred cCcchhhhhhhhhhhccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCcccCCHHHHHHHHHHHHhccCCCeEEEEeCChh
Confidence 000000000 000011122222222221 13455899999976655455556555544444577887775432
Q ss_pred -hhhhc-cccceeeCCCCCHHHHHHHHHHhhcCCCCCCCChhHHHHHHHHHHHhCCCchHHHHh
Q 007817 318 -VASMM-GSVEHYNLKLLSDEYCWSVFVKHAFERRDAGAHQFSKLFRKKIVAKCGGLPLAVSTL 379 (588)
Q Consensus 318 -v~~~~-~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~i~~~I~~~c~GlPLai~~~ 379 (588)
+...+ .....+++.+++.++...++.+.+...+.. ...+....+++.++|.+-.+...
T Consensus 167 ~~~~~L~sr~~~v~~~~~~~~~~~~~l~~~~~~~~~~----~~~~al~~l~~~~~gdlr~l~~~ 226 (337)
T PRK12402 167 KLIPPIRSRCLPLFFRAPTDDELVDVLESIAEAEGVD----YDDDGLELIAYYAGGDLRKAILT 226 (337)
T ss_pred hCchhhcCCceEEEecCCCHHHHHHHHHHHHHHcCCC----CCHHHHHHHHHHcCCCHHHHHHH
Confidence 22222 233578899999999999998876432221 12334567888998876665443
No 26
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.69 E-value=4.1e-07 Score=97.73 Aligned_cols=199 Identities=13% Similarity=0.121 Sum_probs=116.5
Q ss_pred CceeechhhHHHHHHHHhcCCCCCCCCeEEEEEEccCCCcHHHHHHHHHcccccccccccEEEEEEeCCcccHHHHHHHH
Q 007817 169 RAVYGRDEDKARMLEMVLSDDPTTDANFCVIPIVGMAGAGKTMLAREVYNDRAVQNFKFDVKAWVSVSDDFDVLRISRAL 248 (588)
Q Consensus 169 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i 248 (588)
.++||-+.-++.|.+++.... -...+.++|+.|+||||+|+.+.+...... . +..--+. +..+..-.....|
T Consensus 16 ddVIGQe~vv~~L~~al~~gR-----LpHA~LFtGP~GvGKTTLAriLAkaLnC~~-p-~~~~g~~-~~PCG~C~sC~~I 87 (700)
T PRK12323 16 TTLVGQEHVVRALTHALEQQR-----LHHAYLFTGTRGVGKTTLSRILAKSLNCTG-A-DGEGGIT-AQPCGQCRACTEI 87 (700)
T ss_pred HHHcCcHHHHHHHHHHHHhCC-----CceEEEEECCCCCCHHHHHHHHHHHhcCCC-c-cccccCC-CCCCcccHHHHHH
Confidence 468999999999999987553 345778999999999999999987653210 0 0000000 0000000111111
Q ss_pred HHH-----hcCCCCCCCCHHHHHHHHHHH----hcCCceeEEeccccccChhHHHHhhcccCCCCCCcEEEEeecc-hhh
Q 007817 249 LES-----ITSTNCDFKTLNEVQVKLRII----VDGKKFLLVLDDVWNENYNLWEILKAPFMAGARNSKIIVTTCH-SNV 318 (588)
Q Consensus 249 l~~-----l~~~~~~~~~~~~l~~~l~~~----l~~k~~LLVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTTR~-~~v 318 (588)
... +..........+++...+... ..++.-++|||+++..+...++.|+..+.....++.+|++|.+ ..+
T Consensus 88 ~aG~hpDviEIdAas~~gVDdIReLie~~~~~P~~gr~KViIIDEah~Ls~~AaNALLKTLEEPP~~v~FILaTtep~kL 167 (700)
T PRK12323 88 DAGRFVDYIEMDAASNRGVDEMAQLLDKAVYAPTAGRFKVYMIDEVHMLTNHAFNAMLKTLEEPPEHVKFILATTDPQKI 167 (700)
T ss_pred HcCCCCcceEecccccCCHHHHHHHHHHHHhchhcCCceEEEEEChHhcCHHHHHHHHHhhccCCCCceEEEEeCChHhh
Confidence 100 000000112233333322221 1356669999999988888888888887765556666555544 444
Q ss_pred hhhc-cccceeeCCCCCHHHHHHHHHHhhcCCCCCCCChhHHHHHHHHHHHhCCCchHHHHh
Q 007817 319 ASMM-GSVEHYNLKLLSDEYCWSVFVKHAFERRDAGAHQFSKLFRKKIVAKCGGLPLAVSTL 379 (588)
Q Consensus 319 ~~~~-~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~i~~~I~~~c~GlPLai~~~ 379 (588)
...+ .....+.+..++.++..+.+.+.+...+. .. ..+..+.|++.++|.|.....+
T Consensus 168 lpTIrSRCq~f~f~~ls~eei~~~L~~Il~~Egi-~~---d~eAL~~IA~~A~Gs~RdALsL 225 (700)
T PRK12323 168 PVTVLSRCLQFNLKQMPPGHIVSHLDAILGEEGI-AH---EVNALRLLAQAAQGSMRDALSL 225 (700)
T ss_pred hhHHHHHHHhcccCCCChHHHHHHHHHHHHHcCC-CC---CHHHHHHHHHHcCCCHHHHHHH
Confidence 3332 23468999999999999998877633221 11 1233466899999999755443
No 27
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.69 E-value=4.5e-07 Score=100.57 Aligned_cols=183 Identities=14% Similarity=0.132 Sum_probs=115.8
Q ss_pred CceeechhhHHHHHHHHhcCCCCCCCCeEEEEEEccCCCcHHHHHHHHHccccccccc-------------------ccE
Q 007817 169 RAVYGRDEDKARMLEMVLSDDPTTDANFCVIPIVGMAGAGKTMLAREVYNDRAVQNFK-------------------FDV 229 (588)
Q Consensus 169 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~~-------------------f~~ 229 (588)
.++||-+.-++.|.+++.... -...+.++|+.|+||||+|+.+++...... . |.-
T Consensus 16 ddIIGQe~Iv~~LknaI~~~r-----l~HAyLFtGPpGtGKTTLARiLAk~Lnce~-~~~~~pCg~C~sC~~i~~g~~~D 89 (944)
T PRK14949 16 EQMVGQSHVLHALTNALTQQR-----LHHAYLFTGTRGVGKTSLARLFAKGLNCEQ-GVTATPCGVCSSCVEIAQGRFVD 89 (944)
T ss_pred HHhcCcHHHHHHHHHHHHhCC-----CCeEEEEECCCCCCHHHHHHHHHHhccCcc-CCCCCCCCCchHHHHHhcCCCce
Confidence 468999999999999886542 235668999999999999999998654321 1 001
Q ss_pred EEEEEeCCcccHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHH-HhcCCceeEEeccccccChhHHHHhhcccCCCCCCcE
Q 007817 230 KAWVSVSDDFDVLRISRALLESITSTNCDFKTLNEVQVKLRI-IVDGKKFLLVLDDVWNENYNLWEILKAPFMAGARNSK 308 (588)
Q Consensus 230 ~~wv~v~~~~~~~~~~~~il~~l~~~~~~~~~~~~l~~~l~~-~l~~k~~LLVlDdv~~~~~~~~~~l~~~l~~~~~gs~ 308 (588)
.++++..... ...++.++...+.. -..+++-++|||+++..+....+.|+..+.......+
T Consensus 90 viEidAas~~------------------kVDdIReLie~v~~~P~~gk~KViIIDEAh~LT~eAqNALLKtLEEPP~~vr 151 (944)
T PRK14949 90 LIEVDAASRT------------------KVDDTRELLDNVQYRPSRGRFKVYLIDEVHMLSRSSFNALLKTLEEPPEHVK 151 (944)
T ss_pred EEEecccccc------------------CHHHHHHHHHHHHhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhccCCCeE
Confidence 1111111000 11112222222211 1246677999999998888888888888876555676
Q ss_pred EEEeecch-hhhhh-ccccceeeCCCCCHHHHHHHHHHhhcCCCCCCCChhHHHHHHHHHHHhCCCchHHHHh
Q 007817 309 IIVTTCHS-NVASM-MGSVEHYNLKLLSDEYCWSVFVKHAFERRDAGAHQFSKLFRKKIVAKCGGLPLAVSTL 379 (588)
Q Consensus 309 ilvTTR~~-~v~~~-~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~i~~~I~~~c~GlPLai~~~ 379 (588)
+|++|.+. .+... ......|++.+|+.++...++.+.+-..+. ....+....|++.++|.|--+..+
T Consensus 152 FILaTTe~~kLl~TIlSRCq~f~fkpLs~eEI~~~L~~il~~EgI----~~edeAL~lIA~~S~Gd~R~ALnL 220 (944)
T PRK14949 152 FLLATTDPQKLPVTVLSRCLQFNLKSLTQDEIGTQLNHILTQEQL----PFEAEALTLLAKAANGSMRDALSL 220 (944)
T ss_pred EEEECCCchhchHHHHHhheEEeCCCCCHHHHHHHHHHHHHHcCC----CCCHHHHHHHHHHcCCCHHHHHHH
Confidence 66665543 33322 223468999999999999999886633211 112234567999999988644443
No 28
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.68 E-value=6.6e-08 Score=103.51 Aligned_cols=194 Identities=14% Similarity=0.109 Sum_probs=115.3
Q ss_pred CceeechhhHHHHHHHHhcCCCCCCCCeEEEEEEccCCCcHHHHHHHHHcccccccccccEEEEEEeCCcccHHHHHHHH
Q 007817 169 RAVYGRDEDKARMLEMVLSDDPTTDANFCVIPIVGMAGAGKTMLAREVYNDRAVQNFKFDVKAWVSVSDDFDVLRISRAL 248 (588)
Q Consensus 169 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i 248 (588)
.+++|-+.-.+.|..++.... -...+.++|++|+||||+|+.+++.....+ .+...+|.|.+... +......-
T Consensus 14 ~dvvGq~~v~~~L~~~i~~~~-----l~ha~Lf~GppGtGKTTlA~~lA~~l~c~~-~~~~~cg~C~sc~~-i~~~~h~d 86 (504)
T PRK14963 14 DEVVGQEHVKEVLLAALRQGR-----LGHAYLFSGPRGVGKTTTARLIAMAVNCSG-EDPKPCGECESCLA-VRRGAHPD 86 (504)
T ss_pred HHhcChHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHHHhccC-CCCCCCCcChhhHH-HhcCCCCc
Confidence 358999988888888886542 345679999999999999999988764322 22223333321100 00000000
Q ss_pred HHHhcCCCCCCCCHHHHHHHHHHH-----hcCCceeEEeccccccChhHHHHhhcccCCCCCCcEEEEeecc-hhhhhhc
Q 007817 249 LESITSTNCDFKTLNEVQVKLRII-----VDGKKFLLVLDDVWNENYNLWEILKAPFMAGARNSKIIVTTCH-SNVASMM 322 (588)
Q Consensus 249 l~~l~~~~~~~~~~~~l~~~l~~~-----l~~k~~LLVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTTR~-~~v~~~~ 322 (588)
+..+... .....+.+.. +.+. ..+++-++|||+++..+...++.+...+......+.+|++|.. ..+...+
T Consensus 87 v~el~~~--~~~~vd~iR~-l~~~~~~~p~~~~~kVVIIDEad~ls~~a~naLLk~LEep~~~t~~Il~t~~~~kl~~~I 163 (504)
T PRK14963 87 VLEIDAA--SNNSVEDVRD-LREKVLLAPLRGGRKVYILDEAHMMSKSAFNALLKTLEEPPEHVIFILATTEPEKMPPTI 163 (504)
T ss_pred eEEeccc--ccCCHHHHHH-HHHHHhhccccCCCeEEEEECccccCHHHHHHHHHHHHhCCCCEEEEEEcCChhhCChHH
Confidence 0000100 1111222221 2222 2355679999999877777788888877665555566555543 3333322
Q ss_pred -cccceeeCCCCCHHHHHHHHHHhhcCCCCCCCChhHHHHHHHHHHHhCCCchHH
Q 007817 323 -GSVEHYNLKLLSDEYCWSVFVKHAFERRDAGAHQFSKLFRKKIVAKCGGLPLAV 376 (588)
Q Consensus 323 -~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~i~~~I~~~c~GlPLai 376 (588)
.....+++.+++.++....+.+.+...+... ..+....|++.++|.+--+
T Consensus 164 ~SRc~~~~f~~ls~~el~~~L~~i~~~egi~i----~~~Al~~ia~~s~GdlR~a 214 (504)
T PRK14963 164 LSRTQHFRFRRLTEEEIAGKLRRLLEAEGREA----EPEALQLVARLADGAMRDA 214 (504)
T ss_pred hcceEEEEecCCCHHHHHHHHHHHHHHcCCCC----CHHHHHHHHHHcCCCHHHH
Confidence 2346799999999999999998764332211 2234567999999988655
No 29
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.65 E-value=6.9e-07 Score=96.25 Aligned_cols=193 Identities=12% Similarity=0.103 Sum_probs=115.4
Q ss_pred CceeechhhHHHHHHHHhcCCCCCCCCeEEEEEEccCCCcHHHHHHHHHcccccccccccEEEEEEeCCcccHHHHHHHH
Q 007817 169 RAVYGRDEDKARMLEMVLSDDPTTDANFCVIPIVGMAGAGKTMLAREVYNDRAVQNFKFDVKAWVSVSDDFDVLRISRAL 248 (588)
Q Consensus 169 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i 248 (588)
.+++|.+...+.|.+++.... -...+.++|+.|+||||+|+.+++...... ++.. .++..-...+.+
T Consensus 15 ddVIGQe~vv~~L~~aI~~gr-----l~HAyLF~GPpGvGKTTlAriLAK~LnC~~-------~~~~-~pCg~C~sC~~I 81 (702)
T PRK14960 15 NELVGQNHVSRALSSALERGR-----LHHAYLFTGTRGVGKTTIARILAKCLNCET-------GVTS-TPCEVCATCKAV 81 (702)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHHhCCCc-------CCCC-CCCccCHHHHHH
Confidence 468999999999999997543 346889999999999999999987543211 1100 000100111111
Q ss_pred HHHhcC-----CCCCCCCHHHHHHHHHHH----hcCCceeEEeccccccChhHHHHhhcccCCCCCCcEEEEeecchh-h
Q 007817 249 LESITS-----TNCDFKTLNEVQVKLRII----VDGKKFLLVLDDVWNENYNLWEILKAPFMAGARNSKIIVTTCHSN-V 318 (588)
Q Consensus 249 l~~l~~-----~~~~~~~~~~l~~~l~~~----l~~k~~LLVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTTR~~~-v 318 (588)
...-.. ........+++...+... ..++.-++|||+++..+....+.+...+.....+..+|++|.+.. +
T Consensus 82 ~~g~hpDviEIDAAs~~~VddIReli~~~~y~P~~gk~KV~IIDEVh~LS~~A~NALLKtLEEPP~~v~FILaTtd~~kI 161 (702)
T PRK14960 82 NEGRFIDLIEIDAASRTKVEDTRELLDNVPYAPTQGRFKVYLIDEVHMLSTHSFNALLKTLEEPPEHVKFLFATTDPQKL 161 (702)
T ss_pred hcCCCCceEEecccccCCHHHHHHHHHHHhhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhcCCCCcEEEEEECChHhh
Confidence 100000 000011223222222111 235667999999988777778888777766556677887776542 2
Q ss_pred hhh-ccccceeeCCCCCHHHHHHHHHHhhcCCCCCCCChhHHHHHHHHHHHhCCCchHHHH
Q 007817 319 ASM-MGSVEHYNLKLLSDEYCWSVFVKHAFERRDAGAHQFSKLFRKKIVAKCGGLPLAVST 378 (588)
Q Consensus 319 ~~~-~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~i~~~I~~~c~GlPLai~~ 378 (588)
... ......+++.+++.++....+.+.+...+.... ......|++.++|.+-.+..
T Consensus 162 p~TIlSRCq~feFkpLs~eEI~k~L~~Il~kEgI~id----~eAL~~IA~~S~GdLRdALn 218 (702)
T PRK14960 162 PITVISRCLQFTLRPLAVDEITKHLGAILEKEQIAAD----QDAIWQIAESAQGSLRDALS 218 (702)
T ss_pred hHHHHHhhheeeccCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHHHHH
Confidence 211 234468999999999999998877643322112 22345689999998755443
No 30
>PTZ00202 tuzin; Provisional
Probab=98.63 E-value=1.9e-06 Score=87.80 Aligned_cols=172 Identities=15% Similarity=0.200 Sum_probs=105.0
Q ss_pred CCCCCCCCceeechhhHHHHHHHHhcCCCCCCCCeEEEEEEccCCCcHHHHHHHHHcccccccccccEEEEEEeCCcccH
Q 007817 162 SSRVPTERAVYGRDEDKARMLEMVLSDDPTTDANFCVIPIVGMAGAGKTMLAREVYNDRAVQNFKFDVKAWVSVSDDFDV 241 (588)
Q Consensus 162 ~~~~~~~~~~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~wv~v~~~~~~ 241 (588)
+..+++.+.|+||+.|+..|...|...+. ..++++.|+|++|+|||||++.+..... + ..++++.. +.
T Consensus 255 ~~lPa~~~~FVGReaEla~Lr~VL~~~d~---~~privvLtG~~G~GKTTLlR~~~~~l~-----~-~qL~vNpr---g~ 322 (550)
T PTZ00202 255 QSAPAVIRQFVSREAEESWVRQVLRRLDT---AHPRIVVFTGFRGCGKSSLCRSAVRKEG-----M-PAVFVDVR---GT 322 (550)
T ss_pred cCCCCCccCCCCcHHHHHHHHHHHhccCC---CCceEEEEECCCCCCHHHHHHHHHhcCC-----c-eEEEECCC---CH
Confidence 34456678899999999999999975432 2446999999999999999999986432 1 13333333 67
Q ss_pred HHHHHHHHHHhcCCCCCC--CCHHHHHHHHHHHh-c-CCceeEEeccccccC-hhHHHHhhcccCCCCCCcEEEEeecch
Q 007817 242 LRISRALLESITSTNCDF--KTLNEVQVKLRIIV-D-GKKFLLVLDDVWNEN-YNLWEILKAPFMAGARNSKIIVTTCHS 316 (588)
Q Consensus 242 ~~~~~~il~~l~~~~~~~--~~~~~l~~~l~~~l-~-~k~~LLVlDdv~~~~-~~~~~~l~~~l~~~~~gs~ilvTTR~~ 316 (588)
.+++..++.+|+.+.... +-...+++.+.+.- . |++.+||+-=-...+ ....++. ..|.....-|.|++----+
T Consensus 323 eElLr~LL~ALGV~p~~~k~dLLrqIqeaLl~~~~e~GrtPVLII~lreg~~l~rvyne~-v~la~drr~ch~v~evple 401 (550)
T PTZ00202 323 EDTLRSVVKALGVPNVEACGDLLDFISEACRRAKKMNGETPLLVLKLREGSSLQRVYNEV-VALACDRRLCHVVIEVPLE 401 (550)
T ss_pred HHHHHHHHHHcCCCCcccHHHHHHHHHHHHHHHHHhCCCCEEEEEEecCCCcHHHHHHHH-HHHHccchhheeeeeehHh
Confidence 999999999999743221 11233333333322 3 677777763211110 0111211 1233334456777655433
Q ss_pred hhhhhc---cccceeeCCCCCHHHHHHHHHHhh
Q 007817 317 NVASMM---GSVEHYNLKLLSDEYCWSVFVKHA 346 (588)
Q Consensus 317 ~v~~~~---~~~~~~~l~~L~~~ea~~Lf~~~a 346 (588)
.+.... ..-..|.+++++.++|..+-.+..
T Consensus 402 slt~~~~~lprldf~~vp~fsr~qaf~y~~h~~ 434 (550)
T PTZ00202 402 SLTIANTLLPRLDFYLVPNFSRSQAFAYTQHAI 434 (550)
T ss_pred hcchhcccCccceeEecCCCCHHHHHHHHhhcc
Confidence 332211 123568899999999999877654
No 31
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=98.63 E-value=5.8e-07 Score=84.10 Aligned_cols=183 Identities=20% Similarity=0.198 Sum_probs=99.2
Q ss_pred CCceeechhhHHHHHHHHhcCCCCCCCCeEEEEEEccCCCcHHHHHHHHHcccccccccccEEEEEEeCCcccHHHHHHH
Q 007817 168 ERAVYGRDEDKARMLEMVLSDDPTTDANFCVIPIVGMAGAGKTMLAREVYNDRAVQNFKFDVKAWVSVSDDFDVLRISRA 247 (588)
Q Consensus 168 ~~~~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~ 247 (588)
-.+|||-+.-++.+.-++..... .......+.+||++|+||||||..+++.... .|. +.+...
T Consensus 23 L~efiGQ~~l~~~l~i~i~aa~~-r~~~l~h~lf~GPPG~GKTTLA~IIA~e~~~---~~~---~~sg~~---------- 85 (233)
T PF05496_consen 23 LDEFIGQEHLKGNLKILIRAAKK-RGEALDHMLFYGPPGLGKTTLARIIANELGV---NFK---ITSGPA---------- 85 (233)
T ss_dssp CCCS-S-HHHHHHHHHHHHHHHC-TTS---EEEEESSTTSSHHHHHHHHHHHCT-----EE---EEECCC----------
T ss_pred HHHccCcHHHHhhhHHHHHHHHh-cCCCcceEEEECCCccchhHHHHHHHhccCC---CeE---eccchh----------
Confidence 35799999888776655543211 1235778999999999999999999997654 332 222211
Q ss_pred HHHHhcCCCCCCCCHHHHHHHHHHHhcCCceeEEeccccccChhHHHHhhcccCCC--------CCC-----------cE
Q 007817 248 LLESITSTNCDFKTLNEVQVKLRIIVDGKKFLLVLDDVWNENYNLWEILKAPFMAG--------ARN-----------SK 308 (588)
Q Consensus 248 il~~l~~~~~~~~~~~~l~~~l~~~l~~k~~LLVlDdv~~~~~~~~~~l~~~l~~~--------~~g-----------s~ 308 (588)
.....++...+.. + +++.+|.+|.++.-+...-+.|...+..+ +++ +-
T Consensus 86 -----------i~k~~dl~~il~~-l-~~~~ILFIDEIHRlnk~~qe~LlpamEd~~idiiiG~g~~ar~~~~~l~~FTl 152 (233)
T PF05496_consen 86 -----------IEKAGDLAAILTN-L-KEGDILFIDEIHRLNKAQQEILLPAMEDGKIDIIIGKGPNARSIRINLPPFTL 152 (233)
T ss_dssp -------------SCHHHHHHHHT----TT-EEEECTCCC--HHHHHHHHHHHHCSEEEEEBSSSSS-BEEEEE----EE
T ss_pred -----------hhhHHHHHHHHHh-c-CCCcEEEEechhhccHHHHHHHHHHhccCeEEEEeccccccceeeccCCCceE
Confidence 0111222222222 1 34568888999877655555544332211 111 22
Q ss_pred EEEeecchhhhhhccc-c-ceeeCCCCCHHHHHHHHHHhhcCCCCCCCChhHHHHHHHHHHHhCCCchHHHHhhhhcc
Q 007817 309 IIVTTCHSNVASMMGS-V-EHYNLKLLSDEYCWSVFVKHAFERRDAGAHQFSKLFRKKIVAKCGGLPLAVSTLGGLLR 384 (588)
Q Consensus 309 ilvTTR~~~v~~~~~~-~-~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~i~~~I~~~c~GlPLai~~~~~~L~ 384 (588)
|=.|||...+...+.. . -..+++..+.+|-.++..+.+..-+ -+-..+.+.+|++.|.|-|--..-+-...+
T Consensus 153 igATTr~g~ls~pLrdRFgi~~~l~~Y~~~el~~Iv~r~a~~l~----i~i~~~~~~~Ia~rsrGtPRiAnrll~rvr 226 (233)
T PF05496_consen 153 IGATTRAGLLSSPLRDRFGIVLRLEFYSEEELAKIVKRSARILN----IEIDEDAAEEIARRSRGTPRIANRLLRRVR 226 (233)
T ss_dssp EEEESSGCCTSHCCCTTSSEEEE----THHHHHHHHHHCCHCTT-----EE-HHHHHHHHHCTTTSHHHHHHHHHHHC
T ss_pred eeeeccccccchhHHhhcceecchhcCCHHHHHHHHHHHHHHhC----CCcCHHHHHHHHHhcCCChHHHHHHHHHHH
Confidence 4467777655544432 2 2457999999999999988764322 223345678899999999986655544443
No 32
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=98.62 E-value=3.3e-07 Score=81.65 Aligned_cols=125 Identities=18% Similarity=0.131 Sum_probs=72.7
Q ss_pred eechhhHHHHHHHHhcCCCCCCCCeEEEEEEccCCCcHHHHHHHHHcccccccccccEEEEEEeCCcccHHHHHHHHHHH
Q 007817 172 YGRDEDKARMLEMVLSDDPTTDANFCVIPIVGMAGAGKTMLAREVYNDRAVQNFKFDVKAWVSVSDDFDVLRISRALLES 251 (588)
Q Consensus 172 vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~il~~ 251 (588)
+|++..+..+...+... ....+.|+|++|+|||+|++.+++..... -..++++..............+...
T Consensus 1 ~~~~~~~~~i~~~~~~~------~~~~v~i~G~~G~GKT~l~~~i~~~~~~~---~~~v~~~~~~~~~~~~~~~~~~~~~ 71 (151)
T cd00009 1 VGQEEAIEALREALELP------PPKNLLLYGPPGTGKTTLARAIANELFRP---GAPFLYLNASDLLEGLVVAELFGHF 71 (151)
T ss_pred CchHHHHHHHHHHHhCC------CCCeEEEECCCCCCHHHHHHHHHHHhhcC---CCCeEEEehhhhhhhhHHHHHhhhh
Confidence 47888899998888653 23688899999999999999999976421 2345566655443322211111100
Q ss_pred hcCCCCCCCCHHHHHHHHHHHhcCCceeEEeccccccChh---HHHHhhcccCCC---CCCcEEEEeecchh
Q 007817 252 ITSTNCDFKTLNEVQVKLRIIVDGKKFLLVLDDVWNENYN---LWEILKAPFMAG---ARNSKIIVTTCHSN 317 (588)
Q Consensus 252 l~~~~~~~~~~~~l~~~l~~~l~~k~~LLVlDdv~~~~~~---~~~~l~~~l~~~---~~gs~ilvTTR~~~ 317 (588)
............++.+||+||++..... .+..+...+... ..+..||+||....
T Consensus 72 ------------~~~~~~~~~~~~~~~~lilDe~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~ 131 (151)
T cd00009 72 ------------LVRLLFELAEKAKPGVLFIDEIDSLSRGAQNALLRVLETLNDLRIDRENVRVIGATNRPL 131 (151)
T ss_pred ------------hHhHHHHhhccCCCeEEEEeChhhhhHHHHHHHHHHHHhcCceeccCCCeEEEEecCccc
Confidence 0011112223456789999999753222 222222222221 35778888887543
No 33
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=98.60 E-value=4.1e-06 Score=86.16 Aligned_cols=207 Identities=15% Similarity=0.155 Sum_probs=130.2
Q ss_pred ceeechhhHHHHHHHHhcCCCCCCCCeEEEEEEccCCCcHHHHHHHHHcccccccccccEEEEEEeCCcccHHHHHHHHH
Q 007817 170 AVYGRDEDKARMLEMVLSDDPTTDANFCVIPIVGMAGAGKTMLAREVYNDRAVQNFKFDVKAWVSVSDDFDVLRISRALL 249 (588)
Q Consensus 170 ~~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~il 249 (588)
.+.+|+.+++++...|...-. +..+.-+.|+|.+|+|||+.++.+.+.........+ .++|++....+..+++..|+
T Consensus 18 ~l~~Re~ei~~l~~~l~~~~~--~~~p~n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~-~~yINc~~~~t~~~i~~~i~ 94 (366)
T COG1474 18 ELPHREEEINQLASFLAPALR--GERPSNIIIYGPTGTGKTATVKFVMEELEESSANVE-VVYINCLELRTPYQVLSKIL 94 (366)
T ss_pred cccccHHHHHHHHHHHHHHhc--CCCCccEEEECCCCCCHhHHHHHHHHHHHhhhccCc-eEEEeeeeCCCHHHHHHHHH
Confidence 388999999999998876543 223344899999999999999999998765431222 78999999999999999999
Q ss_pred HHhcCCCCCCCCHHHHHHHHHHHhc--CCceeEEeccccccChhHHHHhhcccCCCC-CCcEE--EEeecchhhhhhcc-
Q 007817 250 ESITSTNCDFKTLNEVQVKLRIIVD--GKKFLLVLDDVWNENYNLWEILKAPFMAGA-RNSKI--IVTTCHSNVASMMG- 323 (588)
Q Consensus 250 ~~l~~~~~~~~~~~~l~~~l~~~l~--~k~~LLVlDdv~~~~~~~~~~l~~~l~~~~-~gs~i--lvTTR~~~v~~~~~- 323 (588)
..++..+.......+....+.+.+. ++.+++|||++..-....-+.+...+.... ..++| |..+.+......+.
T Consensus 95 ~~~~~~p~~g~~~~~~~~~l~~~~~~~~~~~IvvLDEid~L~~~~~~~LY~L~r~~~~~~~~v~vi~i~n~~~~~~~ld~ 174 (366)
T COG1474 95 NKLGKVPLTGDSSLEILKRLYDNLSKKGKTVIVILDEVDALVDKDGEVLYSLLRAPGENKVKVSIIAVSNDDKFLDYLDP 174 (366)
T ss_pred HHcCCCCCCCCchHHHHHHHHHHHHhcCCeEEEEEcchhhhccccchHHHHHHhhccccceeEEEEEEeccHHHHHHhhh
Confidence 9997554444555666666666664 578999999985422111122222222211 13443 33333333322221
Q ss_pred ------ccceeeCCCCCHHHHHHHHHHhhcCC-CCC-CCChhHHHHHHHHHHHhCCCchHHHHh
Q 007817 324 ------SVEHYNLKLLSDEYCWSVFVKHAFER-RDA-GAHQFSKLFRKKIVAKCGGLPLAVSTL 379 (588)
Q Consensus 324 ------~~~~~~l~~L~~~ea~~Lf~~~a~~~-~~~-~~~~~~~~i~~~I~~~c~GlPLai~~~ 379 (588)
....+..+|-+.+|-...+..++-.. ... ..+..++.++...++..|-.=.||..+
T Consensus 175 rv~s~l~~~~I~F~pY~a~el~~Il~~R~~~~~~~~~~~~~vl~lia~~~a~~~GDAR~aidil 238 (366)
T COG1474 175 RVKSSLGPSEIVFPPYTAEELYDILRERVEEGFSAGVIDDDVLKLIAALVAAESGDARKAIDIL 238 (366)
T ss_pred hhhhccCcceeeeCCCCHHHHHHHHHHHHHhhccCCCcCccHHHHHHHHHHHcCccHHHHHHHH
Confidence 12347889999999999999887322 111 233344444444444444444444444
No 34
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=98.60 E-value=1.6e-06 Score=88.57 Aligned_cols=184 Identities=15% Similarity=0.108 Sum_probs=107.5
Q ss_pred CceeechhhHHHHHHHHhcCCCCCCCCeEEEEEEccCCCcHHHHHHHHHcccccccccccEEEEEEeCCcccHHHHHHHH
Q 007817 169 RAVYGRDEDKARMLEMVLSDDPTTDANFCVIPIVGMAGAGKTMLAREVYNDRAVQNFKFDVKAWVSVSDDFDVLRISRAL 248 (588)
Q Consensus 169 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i 248 (588)
.+++|++..++.+..++... ..+.+.|+|++|+||||+|+.+++........+. .+-++.+...... .....
T Consensus 17 ~~~~g~~~~~~~l~~~i~~~------~~~~~ll~G~~G~GKt~~~~~l~~~l~~~~~~~~-~i~~~~~~~~~~~-~~~~~ 88 (319)
T PRK00440 17 DEIVGQEEIVERLKSYVKEK------NMPHLLFAGPPGTGKTTAALALARELYGEDWREN-FLELNASDERGID-VIRNK 88 (319)
T ss_pred HHhcCcHHHHHHHHHHHhCC------CCCeEEEECCCCCCHHHHHHHHHHHHcCCccccc-eEEeccccccchH-HHHHH
Confidence 45889999999999998643 2345799999999999999999886543220111 1111222221111 11111
Q ss_pred HHHhcCCCCCCCCHHHHHHHHHHHhcCCceeEEeccccccChhHHHHhhcccCCCCCCcEEEEeecch-hhhhhc-cccc
Q 007817 249 LESITSTNCDFKTLNEVQVKLRIIVDGKKFLLVLDDVWNENYNLWEILKAPFMAGARNSKIIVTTCHS-NVASMM-GSVE 326 (588)
Q Consensus 249 l~~l~~~~~~~~~~~~l~~~l~~~l~~k~~LLVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTTR~~-~v~~~~-~~~~ 326 (588)
+..+....+ .....+-++++|+++.........+...+......+.+|+++... ...... ....
T Consensus 89 i~~~~~~~~--------------~~~~~~~vviiDe~~~l~~~~~~~L~~~le~~~~~~~lIl~~~~~~~l~~~l~sr~~ 154 (319)
T PRK00440 89 IKEFARTAP--------------VGGAPFKIIFLDEADNLTSDAQQALRRTMEMYSQNTRFILSCNYSSKIIDPIQSRCA 154 (319)
T ss_pred HHHHHhcCC--------------CCCCCceEEEEeCcccCCHHHHHHHHHHHhcCCCCCeEEEEeCCccccchhHHHHhh
Confidence 111110000 001235689999987655555556665555444556777776432 221111 1334
Q ss_pred eeeCCCCCHHHHHHHHHHhhcCCCCCCCChhHHHHHHHHHHHhCCCchHHHH
Q 007817 327 HYNLKLLSDEYCWSVFVKHAFERRDAGAHQFSKLFRKKIVAKCGGLPLAVST 378 (588)
Q Consensus 327 ~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~i~~~I~~~c~GlPLai~~ 378 (588)
.+++.++++++...++...+...+..- ..+....+++.++|.+.-+..
T Consensus 155 ~~~~~~l~~~ei~~~l~~~~~~~~~~i----~~~al~~l~~~~~gd~r~~~~ 202 (319)
T PRK00440 155 VFRFSPLKKEAVAERLRYIAENEGIEI----TDDALEAIYYVSEGDMRKAIN 202 (319)
T ss_pred eeeeCCCCHHHHHHHHHHHHHHcCCCC----CHHHHHHHHHHcCCCHHHHHH
Confidence 689999999999999888774332211 233456789999998776433
No 35
>PLN03025 replication factor C subunit; Provisional
Probab=98.59 E-value=1.3e-06 Score=89.02 Aligned_cols=183 Identities=13% Similarity=0.139 Sum_probs=107.6
Q ss_pred CceeechhhHHHHHHHHhcCCCCCCCCeEEEEEEccCCCcHHHHHHHHHccccccccccc-EEEEEEeCCcccHHHHHHH
Q 007817 169 RAVYGRDEDKARMLEMVLSDDPTTDANFCVIPIVGMAGAGKTMLAREVYNDRAVQNFKFD-VKAWVSVSDDFDVLRISRA 247 (588)
Q Consensus 169 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~~f~-~~~wv~v~~~~~~~~~~~~ 247 (588)
.+++|.+..++.|.+++... +.+.+.++|++|+||||+|+.+++..... .|. .++-++.++..... ..+.
T Consensus 13 ~~~~g~~~~~~~L~~~~~~~------~~~~lll~Gp~G~GKTtla~~la~~l~~~--~~~~~~~eln~sd~~~~~-~vr~ 83 (319)
T PLN03025 13 DDIVGNEDAVSRLQVIARDG------NMPNLILSGPPGTGKTTSILALAHELLGP--NYKEAVLELNASDDRGID-VVRN 83 (319)
T ss_pred HHhcCcHHHHHHHHHHHhcC------CCceEEEECCCCCCHHHHHHHHHHHHhcc--cCccceeeecccccccHH-HHHH
Confidence 45789888888888877543 33457799999999999999998865322 121 12222223222221 1222
Q ss_pred HHHHhcCCCCCCCCHHHHHHHHHHHhcCCceeEEeccccccChhHHHHhhcccCCCCCCcEEEEeecch-hhhhhc-ccc
Q 007817 248 LLESITSTNCDFKTLNEVQVKLRIIVDGKKFLLVLDDVWNENYNLWEILKAPFMAGARNSKIIVTTCHS-NVASMM-GSV 325 (588)
Q Consensus 248 il~~l~~~~~~~~~~~~l~~~l~~~l~~k~~LLVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTTR~~-~v~~~~-~~~ 325 (588)
++..+...... .-.++.-+++||+++..+....+.+...+......+++++++... .+...+ ...
T Consensus 84 ~i~~~~~~~~~-------------~~~~~~kviiiDE~d~lt~~aq~aL~~~lE~~~~~t~~il~~n~~~~i~~~L~SRc 150 (319)
T PLN03025 84 KIKMFAQKKVT-------------LPPGRHKIVILDEADSMTSGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRC 150 (319)
T ss_pred HHHHHHhcccc-------------CCCCCeEEEEEechhhcCHHHHHHHHHHHhcccCCceEEEEeCCccccchhHHHhh
Confidence 22211100000 002346699999998776666666665554444567777766443 222211 123
Q ss_pred ceeeCCCCCHHHHHHHHHHhhcCCCCCCCChhHHHHHHHHHHHhCCCchHHH
Q 007817 326 EHYNLKLLSDEYCWSVFVKHAFERRDAGAHQFSKLFRKKIVAKCGGLPLAVS 377 (588)
Q Consensus 326 ~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~i~~~I~~~c~GlPLai~ 377 (588)
..+++.++++++....+...+-..+..-. .+....|++.++|..-.+.
T Consensus 151 ~~i~f~~l~~~~l~~~L~~i~~~egi~i~----~~~l~~i~~~~~gDlR~al 198 (319)
T PLN03025 151 AIVRFSRLSDQEILGRLMKVVEAEKVPYV----PEGLEAIIFTADGDMRQAL 198 (319)
T ss_pred hcccCCCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHHHH
Confidence 57999999999999998887643222111 2335678899988765443
No 36
>PF13173 AAA_14: AAA domain
Probab=98.59 E-value=2.2e-07 Score=81.28 Aligned_cols=119 Identities=22% Similarity=0.209 Sum_probs=78.4
Q ss_pred EEEEEEccCCCcHHHHHHHHHcccccccccccEEEEEEeCCcccHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhcCC
Q 007817 197 CVIPIVGMAGAGKTMLAREVYNDRAVQNFKFDVKAWVSVSDDFDVLRISRALLESITSTNCDFKTLNEVQVKLRIIVDGK 276 (588)
Q Consensus 197 ~vv~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~il~~l~~~~~~~~~~~~l~~~l~~~l~~k 276 (588)
+++.|.|+.|+|||||+++++++.. ....++++++.+......... + ....+.+....+
T Consensus 3 ~~~~l~G~R~vGKTtll~~~~~~~~----~~~~~~yi~~~~~~~~~~~~~----------------~-~~~~~~~~~~~~ 61 (128)
T PF13173_consen 3 KIIILTGPRGVGKTTLLKQLAKDLL----PPENILYINFDDPRDRRLADP----------------D-LLEYFLELIKPG 61 (128)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhc----ccccceeeccCCHHHHHHhhh----------------h-hHHHHHHhhccC
Confidence 6899999999999999999998654 124567777765533111000 0 122233333347
Q ss_pred ceeEEeccccccChhHHHHhhcccCCCCCCcEEEEeecchhhhhh------ccccceeeCCCCCHHHH
Q 007817 277 KFLLVLDDVWNENYNLWEILKAPFMAGARNSKIIVTTCHSNVASM------MGSVEHYNLKLLSDEYC 338 (588)
Q Consensus 277 ~~LLVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTTR~~~v~~~------~~~~~~~~l~~L~~~ea 338 (588)
+.+|+||+++.. ..|......+....+..+|++|+.+...... .+....+++.||+..|.
T Consensus 62 ~~~i~iDEiq~~--~~~~~~lk~l~d~~~~~~ii~tgS~~~~l~~~~~~~l~gr~~~~~l~Plsf~E~ 127 (128)
T PF13173_consen 62 KKYIFIDEIQYL--PDWEDALKFLVDNGPNIKIILTGSSSSLLSKDIAESLAGRVIEIELYPLSFREF 127 (128)
T ss_pred CcEEEEehhhhh--ccHHHHHHHHHHhccCceEEEEccchHHHhhcccccCCCeEEEEEECCCCHHHh
Confidence 889999999654 4677666666655567899999987755532 12335689999998774
No 37
>COG3903 Predicted ATPase [General function prediction only]
Probab=98.59 E-value=1e-07 Score=95.78 Aligned_cols=292 Identities=17% Similarity=0.144 Sum_probs=180.7
Q ss_pred CeEEEEEEccCCCcHHHHHHHHHcccccccccccEEEEEEeCCcccHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhc
Q 007817 195 NFCVIPIVGMAGAGKTMLAREVYNDRAVQNFKFDVKAWVSVSDDFDVLRISRALLESITSTNCDFKTLNEVQVKLRIIVD 274 (588)
Q Consensus 195 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~il~~l~~~~~~~~~~~~l~~~l~~~l~ 274 (588)
..+.+.++|.|||||||++-++.. .+. . +-+.+.++....-.+...+...+...++..... .+.....+.....
T Consensus 13 ~~RlvtL~g~ggvgkttl~~~~a~-~~~-~-~~~~v~~vdl~pitD~~~v~~~~ag~~gl~~~~---g~~~~~~~~~~~~ 86 (414)
T COG3903 13 ALRLVTLTGAGGVGKTTLALQAAH-AAS-E-YADGVAFVDLAPITDPALVFPTLAGALGLHVQP---GDSAVDTLVRRIG 86 (414)
T ss_pred hhheeeeeccCccceehhhhhhHh-Hhh-h-cccceeeeeccccCchhHhHHHHHhhccccccc---chHHHHHHHHHHh
Confidence 457899999999999999999887 332 1 344566666666656666666666666654432 1223345566667
Q ss_pred CCceeEEeccccccChhHHHHhhcccCCCCCCcEEEEeecchhhhhhccccceeeCCCCCHH-HHHHHHHHhhcCCCCC-
Q 007817 275 GKKFLLVLDDVWNENYNLWEILKAPFMAGARNSKIIVTTCHSNVASMMGSVEHYNLKLLSDE-YCWSVFVKHAFERRDA- 352 (588)
Q Consensus 275 ~k~~LLVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTTR~~~v~~~~~~~~~~~l~~L~~~-ea~~Lf~~~a~~~~~~- 352 (588)
+++.++|+||...- ...-..+...+..+...-.|+.|+|..... .......+.+|+.. ++.++|...+......
T Consensus 87 ~rr~llvldncehl-~~~~a~~i~all~~~~~~~~~atsre~~l~---~ge~~~~~~~L~~~d~a~~lf~~ra~~~~~~f 162 (414)
T COG3903 87 DRRALLVLDNCEHL-LDACAALIVALLGACPRLAILATSREAILV---AGEVHRRVPSLSLFDEAIELFVCRAVLVALSF 162 (414)
T ss_pred hhhHHHHhcCcHHH-HHHHHHHHHHHHccchhhhhHHHhHhhhcc---cccccccCCccccCCchhHHHHHHHHHhccce
Confidence 89999999998321 112222334444555566788888865433 23456777777765 7888888766332211
Q ss_pred CCChhHHHHHHHHHHHhCCCchHHHHhhhhccCCCC-------HHHHHHHHhcccCCCCCcccHHHHHHHHhccCchhHH
Q 007817 353 GAHQFSKLFRKKIVAKCGGLPLAVSTLGGLLRTRHT-------EDAWEEIVSSKMWDLPQQTDILAVLRLSYHYLPSHLK 425 (588)
Q Consensus 353 ~~~~~~~~i~~~I~~~c~GlPLai~~~~~~L~~~~~-------~~~w~~~~~~~~~~~~~~~~i~~~l~~sy~~L~~~~k 425 (588)
...........+|.++..|.||+|..+++..++-.. .+.|..+......-........+.+.+||.-|..-.+
T Consensus 163 ~l~~~~~a~v~~icr~ldg~~laielaaarv~sl~~~~i~~~L~drf~ll~~~~r~a~~~~qtl~asl~ws~~lLtgwe~ 242 (414)
T COG3903 163 WLTDDNAAAVAEICRRLDGIPLAIELAAARVRSLSPDEIAAGLRDRFRLLTGGARLAVLRQQTLRASLDWSYALLTGWER 242 (414)
T ss_pred eecCCchHHHHHHHHHhhcchHHHHHHHHHHHhcCHHHHHHHHhhHHHHHhcccccchhHHHhccchhhhhhHhhhhHHH
Confidence 112233445678999999999999999998876521 1223222221000011145678899999999999999
Q ss_pred HHHhHhcccCCCceeehhHHHHHHHHcCCcccCCCCCCHHHHHHHHHHHHhhCCccccccC-CcCeEEEchhHHHHHHHH
Q 007817 426 RCFTYCAIFPKNYEFEKNELVFLWMGEGMIQQSRTGKLLEDLGNEFFCNPLSRSLFQQSSR-DVRKFVMHDLVHDLAQLV 504 (588)
Q Consensus 426 ~cf~~ls~Fp~~~~i~~~~Li~~W~aeg~i~~~~~~~~~e~~~~~~l~~L~~rsllq~~~~-~~~~~~mHdlv~d~a~~~ 504 (588)
-.|.-++.|...+... ...|.+-|-.. ....-..-..+..|++.+++-..+. +...|+.-+-++.|+..+
T Consensus 243 ~~~~rLa~~~g~f~~~----l~~~~a~g~~~-----~~~~y~~~~a~~ll~~kslv~a~~~~~~a~~Rl~eT~r~Yalae 313 (414)
T COG3903 243 ALFGRLAVFVGGFDLG----LALAVAAGADV-----DVPRYLVLLALTLLVDKSLVVALDLLGRARYRLLETGRRYALAE 313 (414)
T ss_pred HHhcchhhhhhhhccc----HHHHHhcCCcc-----ccchHHHHHHHHHHhhccchhhhhhhhHHHHHHHHHHHHHHHHH
Confidence 9999999998877544 33444443221 0122334455678888888765432 223455555555555544
Q ss_pred h
Q 007817 505 S 505 (588)
Q Consensus 505 ~ 505 (588)
-
T Consensus 314 L 314 (414)
T COG3903 314 L 314 (414)
T ss_pred H
Confidence 3
No 38
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=98.58 E-value=1.8e-06 Score=92.25 Aligned_cols=194 Identities=13% Similarity=0.112 Sum_probs=113.9
Q ss_pred CceeechhhHHHHHHHHhcCCCCCCCCeEEEEEEccCCCcHHHHHHHHHcccccccccccE-EEEEEeCCcccHHHHHHH
Q 007817 169 RAVYGRDEDKARMLEMVLSDDPTTDANFCVIPIVGMAGAGKTMLAREVYNDRAVQNFKFDV-KAWVSVSDDFDVLRISRA 247 (588)
Q Consensus 169 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~-~~wv~v~~~~~~~~~~~~ 247 (588)
.+++|-+.-+..|...+.... -...+.++|+.|+||||+|+.+++...... .... ..+..+... .....
T Consensus 21 ~dliGq~~vv~~L~~ai~~~r-----i~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~-~~~~~~~~~~C~~C----~~C~~ 90 (507)
T PRK06645 21 AELQGQEVLVKVLSYTILNDR-----LAGGYLLTGIRGVGKTTSARIIAKAVNCSA-LITENTTIKTCEQC----TNCIS 90 (507)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CCceEEEECCCCCCHHHHHHHHHHHhcCcc-ccccCcCcCCCCCC----hHHHH
Confidence 457899998888888776542 346788999999999999999988653221 0000 000000000 00011
Q ss_pred HHHHhcC-----CCCCCCCHHHHHHHHHHH----hcCCceeEEeccccccChhHHHHhhcccCCCCCCcEEEE-eecchh
Q 007817 248 LLESITS-----TNCDFKTLNEVQVKLRII----VDGKKFLLVLDDVWNENYNLWEILKAPFMAGARNSKIIV-TTCHSN 317 (588)
Q Consensus 248 il~~l~~-----~~~~~~~~~~l~~~l~~~----l~~k~~LLVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilv-TTR~~~ 317 (588)
+...... ........+++...+... +.+++-++|+|+++..+...++.+...+......+.+|+ ||+...
T Consensus 91 i~~~~h~Dv~eidaas~~~vd~Ir~iie~a~~~P~~~~~KVvIIDEa~~Ls~~a~naLLk~LEepp~~~vfI~aTte~~k 170 (507)
T PRK06645 91 FNNHNHPDIIEIDAASKTSVDDIRRIIESAEYKPLQGKHKIFIIDEVHMLSKGAFNALLKTLEEPPPHIIFIFATTEVQK 170 (507)
T ss_pred HhcCCCCcEEEeeccCCCCHHHHHHHHHHHHhccccCCcEEEEEEChhhcCHHHHHHHHHHHhhcCCCEEEEEEeCChHH
Confidence 1000000 000112233333222221 235677999999988777788888888776555666655 444444
Q ss_pred hhhhcc-ccceeeCCCCCHHHHHHHHHHhhcCCCCCCCChhHHHHHHHHHHHhCCCchHH
Q 007817 318 VASMMG-SVEHYNLKLLSDEYCWSVFVKHAFERRDAGAHQFSKLFRKKIVAKCGGLPLAV 376 (588)
Q Consensus 318 v~~~~~-~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~i~~~I~~~c~GlPLai 376 (588)
+...+. ....+++.+++.++....+.+.+...+...+ .+....|++.++|.+--+
T Consensus 171 I~~tI~SRc~~~ef~~ls~~el~~~L~~i~~~egi~ie----~eAL~~Ia~~s~GslR~a 226 (507)
T PRK06645 171 IPATIISRCQRYDLRRLSFEEIFKLLEYITKQENLKTD----IEALRIIAYKSEGSARDA 226 (507)
T ss_pred hhHHHHhcceEEEccCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHHH
Confidence 443332 3467999999999999999988754332111 233456888999977544
No 39
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.56 E-value=2e-06 Score=92.52 Aligned_cols=185 Identities=15% Similarity=0.135 Sum_probs=113.2
Q ss_pred CceeechhhHHHHHHHHhcCCCCCCCCeEEEEEEccCCCcHHHHHHHHHccccccc------------------ccccEE
Q 007817 169 RAVYGRDEDKARMLEMVLSDDPTTDANFCVIPIVGMAGAGKTMLAREVYNDRAVQN------------------FKFDVK 230 (588)
Q Consensus 169 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~------------------~~f~~~ 230 (588)
.+++|-+..++.|...+.... -...+.++|+.|+||||+|+.+++...... ..|...
T Consensus 16 ~diiGq~~~v~~L~~~i~~~r-----l~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~sC~~i~~~~~~dl 90 (546)
T PRK14957 16 AEVAGQQHALNSLVHALETQK-----VHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNKCENCVAINNNSFIDL 90 (546)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHHhcCCCCce
Confidence 468899999999999886542 345678999999999999999987543210 001112
Q ss_pred EEEEeCCcccHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHH-hcCCceeEEeccccccChhHHHHhhcccCCCCCCcEE
Q 007817 231 AWVSVSDDFDVLRISRALLESITSTNCDFKTLNEVQVKLRII-VDGKKFLLVLDDVWNENYNLWEILKAPFMAGARNSKI 309 (588)
Q Consensus 231 ~wv~v~~~~~~~~~~~~il~~l~~~~~~~~~~~~l~~~l~~~-l~~k~~LLVlDdv~~~~~~~~~~l~~~l~~~~~gs~i 309 (588)
+++.......+ ++..++...+... ..+++-++|+|+++..+...++.++..+......+.+
T Consensus 91 ieidaas~~gv------------------d~ir~ii~~~~~~p~~g~~kViIIDEa~~ls~~a~naLLK~LEepp~~v~f 152 (546)
T PRK14957 91 IEIDAASRTGV------------------EETKEILDNIQYMPSQGRYKVYLIDEVHMLSKQSFNALLKTLEEPPEYVKF 152 (546)
T ss_pred EEeecccccCH------------------HHHHHHHHHHHhhhhcCCcEEEEEechhhccHHHHHHHHHHHhcCCCCceE
Confidence 22221111111 1112222222211 2356679999999887777888888888766556666
Q ss_pred EEeecc-hhhhhh-ccccceeeCCCCCHHHHHHHHHHhhcCCCCCCCChhHHHHHHHHHHHhCCCch-HHHHhh
Q 007817 310 IVTTCH-SNVASM-MGSVEHYNLKLLSDEYCWSVFVKHAFERRDAGAHQFSKLFRKKIVAKCGGLPL-AVSTLG 380 (588)
Q Consensus 310 lvTTR~-~~v~~~-~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~i~~~I~~~c~GlPL-ai~~~~ 380 (588)
|++|.+ ..+... ......+++.+++.++....+.+.+-..+. .. .......|++.++|.+- |+..+-
T Consensus 153 IL~Ttd~~kil~tI~SRc~~~~f~~Ls~~eI~~~L~~il~~egi-~~---e~~Al~~Ia~~s~GdlR~alnlLe 222 (546)
T PRK14957 153 ILATTDYHKIPVTILSRCIQLHLKHISQADIKDQLKIILAKENI-NS---DEQSLEYIAYHAKGSLRDALSLLD 222 (546)
T ss_pred EEEECChhhhhhhHHHheeeEEeCCCCHHHHHHHHHHHHHHcCC-CC---CHHHHHHHHHHcCCCHHHHHHHHH
Confidence 655543 333322 224578999999999998888875532221 11 22234568999999664 444443
No 40
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=98.55 E-value=1.4e-06 Score=95.17 Aligned_cols=194 Identities=12% Similarity=0.092 Sum_probs=115.4
Q ss_pred CceeechhhHHHHHHHHhcCCCCCCCCeEEEEEEccCCCcHHHHHHHHHcccccccccccEEEEEEeCCcccHHHHHHHH
Q 007817 169 RAVYGRDEDKARMLEMVLSDDPTTDANFCVIPIVGMAGAGKTMLAREVYNDRAVQNFKFDVKAWVSVSDDFDVLRISRAL 248 (588)
Q Consensus 169 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i 248 (588)
.++||-+.-++.|.+.+.... -...+.++|+.|+||||+|+.+++...... .+. ..++..-...+.|
T Consensus 16 ~divGQe~vv~~L~~~l~~~r-----l~hAyLf~Gp~GvGKTTlAr~lAk~L~c~~-~~~-------~~pCg~C~~C~~i 82 (647)
T PRK07994 16 AEVVGQEHVLTALANALDLGR-----LHHAYLFSGTRGVGKTTIARLLAKGLNCET-GIT-------ATPCGECDNCREI 82 (647)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHhhhhcc-CCC-------CCCCCCCHHHHHH
Confidence 468999999999999886542 235678999999999999999987543211 000 0011111112222
Q ss_pred HHHhc-----CCCCCCCCHHHHHHHHHH---H-hcCCceeEEeccccccChhHHHHhhcccCCCCCCcEEEEeecch-hh
Q 007817 249 LESIT-----STNCDFKTLNEVQVKLRI---I-VDGKKFLLVLDDVWNENYNLWEILKAPFMAGARNSKIIVTTCHS-NV 318 (588)
Q Consensus 249 l~~l~-----~~~~~~~~~~~l~~~l~~---~-l~~k~~LLVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTTR~~-~v 318 (588)
...-. .........+++...+.. . ..++.-++|||+++..+....+.|+..+.......++|++|.+. .+
T Consensus 83 ~~g~~~D~ieidaas~~~VddiR~li~~~~~~p~~g~~KV~IIDEah~Ls~~a~NALLKtLEEPp~~v~FIL~Tt~~~kL 162 (647)
T PRK07994 83 EQGRFVDLIEIDAASRTKVEDTRELLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKL 162 (647)
T ss_pred HcCCCCCceeecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEechHhCCHHHHHHHHHHHHcCCCCeEEEEecCCcccc
Confidence 11000 000001122222222211 1 24667799999999888888888888877655566666555543 33
Q ss_pred hhh-ccccceeeCCCCCHHHHHHHHHHhhcCCCCCCCChhHHHHHHHHHHHhCCCchHHHHh
Q 007817 319 ASM-MGSVEHYNLKLLSDEYCWSVFVKHAFERRDAGAHQFSKLFRKKIVAKCGGLPLAVSTL 379 (588)
Q Consensus 319 ~~~-~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~i~~~I~~~c~GlPLai~~~ 379 (588)
... ......+.+.+|+.++....+.+.+-..+... .......|++.++|.|--+..+
T Consensus 163 l~TI~SRC~~~~f~~Ls~~ei~~~L~~il~~e~i~~----e~~aL~~Ia~~s~Gs~R~Al~l 220 (647)
T PRK07994 163 PVTILSRCLQFHLKALDVEQIRQQLEHILQAEQIPF----EPRALQLLARAADGSMRDALSL 220 (647)
T ss_pred chHHHhhheEeeCCCCCHHHHHHHHHHHHHHcCCCC----CHHHHHHHHHHcCCCHHHHHHH
Confidence 322 22347899999999999999887653222111 1233456899999988754443
No 41
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=98.53 E-value=3e-06 Score=86.85 Aligned_cols=199 Identities=15% Similarity=0.141 Sum_probs=119.1
Q ss_pred CCCceeechhhHHHHHHHHhcCCCCCCCCeEEEEEEccCCCcHHHHHHHHHcccccccc-cccEEEEEEeCCcccHHHHH
Q 007817 167 TERAVYGRDEDKARMLEMVLSDDPTTDANFCVIPIVGMAGAGKTMLAREVYNDRAVQNF-KFDVKAWVSVSDDFDVLRIS 245 (588)
Q Consensus 167 ~~~~~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~-~f~~~~wv~v~~~~~~~~~~ 245 (588)
....++|-+...+.+...+.+.. -...+.|+|+.|+||||+|..+.+..-.... .+... ....+.......
T Consensus 21 ~~~~l~Gh~~a~~~L~~a~~~gr-----l~ha~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~~~---~~~~~~~~c~~c 92 (351)
T PRK09112 21 ENTRLFGHEEAEAFLAQAYREGK-----LHHALLFEGPEGIGKATLAFHLANHILSHPDPAEAPE---TLADPDPASPVW 92 (351)
T ss_pred chhhccCcHHHHHHHHHHHHcCC-----CCeeEeeECCCCCCHHHHHHHHHHHHcCCCccccCcc---ccCCCCCCCHHH
Confidence 34568999999999999987553 3467899999999999999988886533110 01111 001111111122
Q ss_pred HHHHHH-------hcCCC-C------CCCCHHHHHHHHHHHh-----cCCceeEEeccccccChhHHHHhhcccCCCCCC
Q 007817 246 RALLES-------ITSTN-C------DFKTLNEVQVKLRIIV-----DGKKFLLVLDDVWNENYNLWEILKAPFMAGARN 306 (588)
Q Consensus 246 ~~il~~-------l~~~~-~------~~~~~~~l~~~l~~~l-----~~k~~LLVlDdv~~~~~~~~~~l~~~l~~~~~g 306 (588)
+.+... +..+. . ..-..+++. .+.+++ .+++-++|+|+++..+....+.+...+.....+
T Consensus 93 ~~i~~~~hPdl~~l~~~~~~~~~~~~~~I~vd~iR-~l~~~l~~~~~~g~~rVviIDeAd~l~~~aanaLLk~LEEpp~~ 171 (351)
T PRK09112 93 RQIAQGAHPNLLHITRPFDEKTGKFKTAITVDEIR-RVGHFLSQTSGDGNWRIVIIDPADDMNRNAANAILKTLEEPPAR 171 (351)
T ss_pred HHHHcCCCCCEEEeecccccccccccccCCHHHHH-HHHHHhhhccccCCceEEEEEchhhcCHHHHHHHHHHHhcCCCC
Confidence 333221 10000 0 111233332 334433 356679999999888887888887777654445
Q ss_pred cEEEEeecch-hhhhhc-cccceeeCCCCCHHHHHHHHHHhhcCCCCCCCChhHHHHHHHHHHHhCCCchHHHHhh
Q 007817 307 SKIIVTTCHS-NVASMM-GSVEHYNLKLLSDEYCWSVFVKHAFERRDAGAHQFSKLFRKKIVAKCGGLPLAVSTLG 380 (588)
Q Consensus 307 s~ilvTTR~~-~v~~~~-~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~i~~~I~~~c~GlPLai~~~~ 380 (588)
..+|++|... .+...+ .....+++.+++.++...++.+.... . . ...+....|++.++|.|.....+.
T Consensus 172 ~~fiLit~~~~~llptIrSRc~~i~l~pl~~~~~~~~L~~~~~~--~---~-~~~~~~~~i~~~s~G~pr~Al~ll 241 (351)
T PRK09112 172 ALFILISHSSGRLLPTIRSRCQPISLKPLDDDELKKALSHLGSS--Q---G-SDGEITEALLQRSKGSVRKALLLL 241 (351)
T ss_pred ceEEEEECChhhccHHHHhhccEEEecCCCHHHHHHHHHHhhcc--c---C-CCHHHHHHHHHHcCCCHHHHHHHH
Confidence 5555544433 333222 23468999999999999999874311 1 1 112335679999999998765543
No 42
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=98.53 E-value=4.6e-06 Score=81.76 Aligned_cols=199 Identities=16% Similarity=0.124 Sum_probs=125.4
Q ss_pred hhHHHHHHHHhcCCCCCCCCeEEEEEEccCCCcHHHHHHHHHcccccccccc----cEEEEEEeCCcccHHHHHHHHHHH
Q 007817 176 EDKARMLEMVLSDDPTTDANFCVIPIVGMAGAGKTMLAREVYNDRAVQNFKF----DVKAWVSVSDDFDVLRISRALLES 251 (588)
Q Consensus 176 ~e~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~~f----~~~~wv~v~~~~~~~~~~~~il~~ 251 (588)
+-+++|.++|..+. ....+.+.|+|.+|+|||++++.+.+.+.... .- -.++.|.....++...++..|+.+
T Consensus 44 ~~L~~L~~Ll~~P~---~~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~-d~~~~~~PVv~vq~P~~p~~~~~Y~~IL~~ 119 (302)
T PF05621_consen 44 EALDRLEELLEYPK---RHRMPNLLIVGDSNNGKTMIIERFRRLHPPQS-DEDAERIPVVYVQMPPEPDERRFYSAILEA 119 (302)
T ss_pred HHHHHHHHHHhCCc---ccCCCceEEecCCCCcHHHHHHHHHHHCCCCC-CCCCccccEEEEecCCCCChHHHHHHHHHH
Confidence 45667777776553 35667899999999999999999997764322 11 146678888999999999999999
Q ss_pred hcCCCCCCCCHHHHHHHHHHHhcC-CceeEEecccccc---C---hhHHHHhhcccCCCCCCcEEEEeecchhhhhhc--
Q 007817 252 ITSTNCDFKTLNEVQVKLRIIVDG-KKFLLVLDDVWNE---N---YNLWEILKAPFMAGARNSKIIVTTCHSNVASMM-- 322 (588)
Q Consensus 252 l~~~~~~~~~~~~l~~~l~~~l~~-k~~LLVlDdv~~~---~---~~~~~~l~~~l~~~~~gs~ilvTTR~~~v~~~~-- 322 (588)
++.+.....+...+.......++. +.=+||+|++++. + +...-.+...|.+.-.=+-|.+-|+..--+-..
T Consensus 120 lgaP~~~~~~~~~~~~~~~~llr~~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~NeL~ipiV~vGt~~A~~al~~D~ 199 (302)
T PF05621_consen 120 LGAPYRPRDRVAKLEQQVLRLLRRLGVRMLIIDEFHNLLAGSYRKQREFLNALKFLGNELQIPIVGVGTREAYRALRTDP 199 (302)
T ss_pred hCcccCCCCCHHHHHHHHHHHHHHcCCcEEEeechHHHhcccHHHHHHHHHHHHHHhhccCCCeEEeccHHHHHHhccCH
Confidence 998887667777766666666654 3458999999762 1 111122223333333345566666543222111
Q ss_pred ---cccceeeCCCCCHH-HHHHHHHHhh--cCCCCCCCChhHHHHHHHHHHHhCCCchHHHHh
Q 007817 323 ---GSVEHYNLKLLSDE-YCWSVFVKHA--FERRDAGAHQFSKLFRKKIVAKCGGLPLAVSTL 379 (588)
Q Consensus 323 ---~~~~~~~l~~L~~~-ea~~Lf~~~a--~~~~~~~~~~~~~~i~~~I~~~c~GlPLai~~~ 379 (588)
+...++.++....+ +...|+.... .+-.. +..-...+++..|...++|+.=-+..+
T Consensus 200 QLa~RF~~~~Lp~W~~d~ef~~LL~s~e~~LPLr~-~S~l~~~~la~~i~~~s~G~iG~l~~l 261 (302)
T PF05621_consen 200 QLASRFEPFELPRWELDEEFRRLLASFERALPLRK-PSNLASPELARRIHERSEGLIGELSRL 261 (302)
T ss_pred HHHhccCCccCCCCCCCcHHHHHHHHHHHhCCCCC-CCCCCCHHHHHHHHHHcCCchHHHHHH
Confidence 12356677766544 4444544322 22222 223345678889999999987655443
No 43
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=98.52 E-value=1.9e-06 Score=95.09 Aligned_cols=203 Identities=17% Similarity=0.129 Sum_probs=121.8
Q ss_pred CceeechhhHHHHHHHHhcCCCCCCCCeEEEEEEccCCCcHHHHHHHHHcccccccccc---cEEEEEEeCCc---ccHH
Q 007817 169 RAVYGRDEDKARMLEMVLSDDPTTDANFCVIPIVGMAGAGKTMLAREVYNDRAVQNFKF---DVKAWVSVSDD---FDVL 242 (588)
Q Consensus 169 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~~f---~~~~wv~v~~~---~~~~ 242 (588)
+.++|++..+..+.+.+... ....+.|+|++|+||||||+.+++...... .+ ...-|+.+... .+..
T Consensus 154 ~~iiGqs~~~~~l~~~ia~~------~~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~-~~~~~~~~~fv~i~~~~l~~d~~ 226 (615)
T TIGR02903 154 SEIVGQERAIKALLAKVASP------FPQHIILYGPPGVGKTTAARLALEEAKKLK-HTPFAEDAPFVEVDGTTLRWDPR 226 (615)
T ss_pred HhceeCcHHHHHHHHHHhcC------CCCeEEEECCCCCCHHHHHHHHHHhhhhcc-CCcccCCCCeEEEechhccCCHH
Confidence 35889999999888877433 335799999999999999999987654322 22 12234444321 1222
Q ss_pred HHHHHH---------------HHHhcCCCC----------------CCCC-HHHHHHHHHHHhcCCceeEEeccccccCh
Q 007817 243 RISRAL---------------LESITSTNC----------------DFKT-LNEVQVKLRIIVDGKKFLLVLDDVWNENY 290 (588)
Q Consensus 243 ~~~~~i---------------l~~l~~~~~----------------~~~~-~~~l~~~l~~~l~~k~~LLVlDdv~~~~~ 290 (588)
.+...+ +...+.... +... ....+..+...++++++.++-|+.|..+.
T Consensus 227 ~i~~~llg~~~~~~~~~a~~~l~~~gl~~~~~g~v~~asgGvL~LDEi~~Ld~~~Q~~Ll~~Le~~~v~~~~~~~~~~~~ 306 (615)
T TIGR02903 227 EVTNPLLGSVHDPIYQGARRDLAETGVPEPKTGLVTDAHGGVLFIDEIGELDPLLQNKLLKVLEDKRVEFSSSYYDPDDP 306 (615)
T ss_pred HHhHHhcCCccHHHHHHHHHHHHHcCCCchhcCchhhcCCCeEEEeccccCCHHHHHHHHHHHhhCeEEeecceeccCCc
Confidence 221111 111111000 0111 13356788888888899998888877766
Q ss_pred hHHHHhhcccCCCCCCcEEEE--eecchhh-hhhc-cccceeeCCCCCHHHHHHHHHHhhcCCCCCCCChhHHHHHHHHH
Q 007817 291 NLWEILKAPFMAGARNSKIIV--TTCHSNV-ASMM-GSVEHYNLKLLSDEYCWSVFVKHAFERRDAGAHQFSKLFRKKIV 366 (588)
Q Consensus 291 ~~~~~l~~~l~~~~~gs~ilv--TTR~~~v-~~~~-~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~i~~~I~ 366 (588)
..|+.+...+....+...+++ ||++... ...+ .....+.+.+++.++.+.++.+.+..... ... .++.+.|.
T Consensus 307 ~~~~~ik~~~~~~~~~~~VLI~aTt~~~~~l~~aLrSR~~~i~~~pls~edi~~Il~~~a~~~~v-~ls---~eal~~L~ 382 (615)
T TIGR02903 307 NVPKYIKKLFEEGAPADFVLIGATTRDPEEINPALRSRCAEVFFEPLTPEDIALIVLNAAEKINV-HLA---AGVEELIA 382 (615)
T ss_pred ccchhhhhhcccCccceEEEEEeccccccccCHHHHhceeEEEeCCCCHHHHHHHHHHHHHHcCC-CCC---HHHHHHHH
Confidence 778888777766655555555 5554432 1111 12346789999999999999987643211 111 23344566
Q ss_pred HHhCCCchHHHHhhhh
Q 007817 367 AKCGGLPLAVSTLGGL 382 (588)
Q Consensus 367 ~~c~GlPLai~~~~~~ 382 (588)
+.+..-+-++..++..
T Consensus 383 ~ys~~gRraln~L~~~ 398 (615)
T TIGR02903 383 RYTIEGRKAVNILADV 398 (615)
T ss_pred HCCCcHHHHHHHHHHH
Confidence 6665556777766544
No 44
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=98.51 E-value=4.3e-06 Score=86.83 Aligned_cols=184 Identities=16% Similarity=0.147 Sum_probs=111.2
Q ss_pred CceeechhhHHHHHHHHhcCCCCCCCCeEEEEEEccCCCcHHHHHHHHHccccccc-------------------ccccE
Q 007817 169 RAVYGRDEDKARMLEMVLSDDPTTDANFCVIPIVGMAGAGKTMLAREVYNDRAVQN-------------------FKFDV 229 (588)
Q Consensus 169 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~-------------------~~f~~ 229 (588)
..++|.+..++.+.+++.... -...+.++|++|+||||+|+.+.+...... .+++.
T Consensus 14 ~~iig~~~~~~~l~~~~~~~~-----~~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~~~ 88 (355)
T TIGR02397 14 EDVIGQEHIVQTLKNAIKNGR-----IAHAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPCNECESCKEINSGSSLDV 88 (355)
T ss_pred hhccCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCCE
Confidence 457999999999999886542 345788999999999999988877643211 01111
Q ss_pred EEEEEeCCcccHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHH-hcCCceeEEeccccccChhHHHHhhcccCCCCCCcE
Q 007817 230 KAWVSVSDDFDVLRISRALLESITSTNCDFKTLNEVQVKLRII-VDGKKFLLVLDDVWNENYNLWEILKAPFMAGARNSK 308 (588)
Q Consensus 230 ~~wv~v~~~~~~~~~~~~il~~l~~~~~~~~~~~~l~~~l~~~-l~~k~~LLVlDdv~~~~~~~~~~l~~~l~~~~~gs~ 308 (588)
.+++........ -.+.+... +... ..+++-++|+|++...+....+.+...+......+.
T Consensus 89 -~~~~~~~~~~~~-~~~~l~~~-----------------~~~~p~~~~~~vviidea~~l~~~~~~~Ll~~le~~~~~~~ 149 (355)
T TIGR02397 89 -IEIDAASNNGVD-DIREILDN-----------------VKYAPSSGKYKVYIIDEVHMLSKSAFNALLKTLEEPPEHVV 149 (355)
T ss_pred -EEeeccccCCHH-HHHHHHHH-----------------HhcCcccCCceEEEEeChhhcCHHHHHHHHHHHhCCcccee
Confidence 222211111110 11112211 1111 124455899999866655567777777655445667
Q ss_pred EEEeecchh-hhhhc-cccceeeCCCCCHHHHHHHHHHhhcCCCCCCCChhHHHHHHHHHHHhCCCchHHHHhh
Q 007817 309 IIVTTCHSN-VASMM-GSVEHYNLKLLSDEYCWSVFVKHAFERRDAGAHQFSKLFRKKIVAKCGGLPLAVSTLG 380 (588)
Q Consensus 309 ilvTTR~~~-v~~~~-~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~i~~~I~~~c~GlPLai~~~~ 380 (588)
+|++|.+.. +...+ .....+++.++++++...++...+-..+. .. ..+.+..|++.++|.|..+....
T Consensus 150 lIl~~~~~~~l~~~l~sr~~~~~~~~~~~~~l~~~l~~~~~~~g~-~i---~~~a~~~l~~~~~g~~~~a~~~l 219 (355)
T TIGR02397 150 FILATTEPHKIPATILSRCQRFDFKRIPLEDIVERLKKILDKEGI-KI---EDEALELIARAADGSLRDALSLL 219 (355)
T ss_pred EEEEeCCHHHHHHHHHhheeEEEcCCCCHHHHHHHHHHHHHHcCC-CC---CHHHHHHHHHHcCCChHHHHHHH
Confidence 777765443 22222 23457889999999999999887643222 11 13446678999999987665443
No 45
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=98.50 E-value=5.3e-06 Score=77.75 Aligned_cols=91 Identities=15% Similarity=0.169 Sum_probs=64.6
Q ss_pred CCceeEEeccccccChhHHHHhhcccCCCCCCcEEEEeecch-hhhhhc-cccceeeCCCCCHHHHHHHHHHhhcCCCCC
Q 007817 275 GKKFLLVLDDVWNENYNLWEILKAPFMAGARNSKIIVTTCHS-NVASMM-GSVEHYNLKLLSDEYCWSVFVKHAFERRDA 352 (588)
Q Consensus 275 ~k~~LLVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTTR~~-~v~~~~-~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~ 352 (588)
+.+-++|+||+...+....+.+...+......+.+|++|++. .+...+ .....+++.+++.++....+.+. +
T Consensus 95 ~~~kviiide~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~i~sr~~~~~~~~~~~~~~~~~l~~~--g---- 168 (188)
T TIGR00678 95 SGRRVVIIEDAERMNEAAANALLKTLEEPPPNTLFILITPSPEKLLPTIRSRCQVLPFPPLSEEALLQWLIRQ--G---- 168 (188)
T ss_pred CCeEEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhChHHHHhhcEEeeCCCCCHHHHHHHHHHc--C----
Confidence 456689999998777677788887776655567777777654 222221 23468999999999999998876 1
Q ss_pred CCChhHHHHHHHHHHHhCCCchH
Q 007817 353 GAHQFSKLFRKKIVAKCGGLPLA 375 (588)
Q Consensus 353 ~~~~~~~~i~~~I~~~c~GlPLa 375 (588)
.+ .+.+..|++.++|.|..
T Consensus 169 -i~---~~~~~~i~~~~~g~~r~ 187 (188)
T TIGR00678 169 -IS---EEAAELLLALAGGSPGA 187 (188)
T ss_pred -CC---HHHHHHHHHHcCCCccc
Confidence 11 23467899999999863
No 46
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=98.50 E-value=5.9e-06 Score=85.14 Aligned_cols=198 Identities=16% Similarity=0.089 Sum_probs=116.9
Q ss_pred CCceeechhhHHHHHHHHhcCCCCCCCCeEEEEEEccCCCcHHHHHHHHHcccccccc-cccE-EE-EEEeCCcccHHHH
Q 007817 168 ERAVYGRDEDKARMLEMVLSDDPTTDANFCVIPIVGMAGAGKTMLAREVYNDRAVQNF-KFDV-KA-WVSVSDDFDVLRI 244 (588)
Q Consensus 168 ~~~~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~-~f~~-~~-wv~v~~~~~~~~~ 244 (588)
..+++|.+...+.|.+.+.... -...+.++|+.|+||+|+|..+.+..--... .... .. -.++. ....-..
T Consensus 18 ~~~iiGq~~~~~~L~~~~~~~r-----l~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~~~~l~-~~~~c~~ 91 (365)
T PRK07471 18 TTALFGHAAAEAALLDAYRSGR-----LHHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPPPTSLA-IDPDHPV 91 (365)
T ss_pred hhhccChHHHHHHHHHHHHcCC-----CCceEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCcccccccccc-CCCCChH
Confidence 3568999999999999987643 3457889999999999999888775432110 0000 00 00000 0000011
Q ss_pred HHHHHHHhcCC-------C-C------CCCCHHHHHHHHHHHh-----cCCceeEEeccccccChhHHHHhhcccCCCCC
Q 007817 245 SRALLESITST-------N-C------DFKTLNEVQVKLRIIV-----DGKKFLLVLDDVWNENYNLWEILKAPFMAGAR 305 (588)
Q Consensus 245 ~~~il~~l~~~-------~-~------~~~~~~~l~~~l~~~l-----~~k~~LLVlDdv~~~~~~~~~~l~~~l~~~~~ 305 (588)
.+.+...-... . . ..-.++++. .+.+.+ .+.+-++|+||++..+....+.|...+.....
T Consensus 92 c~~i~~~~HPDl~~i~~~~~~~~~~~~~~I~VdqiR-~l~~~~~~~~~~~~~kVviIDead~m~~~aanaLLK~LEepp~ 170 (365)
T PRK07471 92 ARRIAAGAHGGLLTLERSWNEKGKRLRTVITVDEVR-ELISFFGLTAAEGGWRVVIVDTADEMNANAANALLKVLEEPPA 170 (365)
T ss_pred HHHHHccCCCCeEEEecccccccccccccccHHHHH-HHHHHhCcCcccCCCEEEEEechHhcCHHHHHHHHHHHhcCCC
Confidence 11111110000 0 0 011233322 233333 25667999999998888888888887776555
Q ss_pred CcEEEEeecchh-hhhh-ccccceeeCCCCCHHHHHHHHHHhhcCCCCCCCChhHHHHHHHHHHHhCCCchHHHHhh
Q 007817 306 NSKIIVTTCHSN-VASM-MGSVEHYNLKLLSDEYCWSVFVKHAFERRDAGAHQFSKLFRKKIVAKCGGLPLAVSTLG 380 (588)
Q Consensus 306 gs~ilvTTR~~~-v~~~-~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~i~~~I~~~c~GlPLai~~~~ 380 (588)
++.+|++|.+.. +... ......+.+.+++.++..+++...... ... .. ...++..++|.|+....+.
T Consensus 171 ~~~~IL~t~~~~~llpti~SRc~~i~l~~l~~~~i~~~L~~~~~~-----~~~--~~-~~~l~~~s~Gsp~~Al~ll 239 (365)
T PRK07471 171 RSLFLLVSHAPARLLPTIRSRCRKLRLRPLAPEDVIDALAAAGPD-----LPD--DP-RAALAALAEGSVGRALRLA 239 (365)
T ss_pred CeEEEEEECCchhchHHhhccceEEECCCCCHHHHHHHHHHhccc-----CCH--HH-HHHHHHHcCCCHHHHHHHh
Confidence 677777776653 3222 224468999999999999999876411 111 11 2568999999998765543
No 47
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.50 E-value=2.4e-06 Score=90.93 Aligned_cols=198 Identities=17% Similarity=0.205 Sum_probs=115.0
Q ss_pred CceeechhhHHHHHHHHhcCCCCCCCCeEEEEEEccCCCcHHHHHHHHHcccccccc-c-----------------ccEE
Q 007817 169 RAVYGRDEDKARMLEMVLSDDPTTDANFCVIPIVGMAGAGKTMLAREVYNDRAVQNF-K-----------------FDVK 230 (588)
Q Consensus 169 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~-~-----------------f~~~ 230 (588)
.+++|.+.-...|...+.... -...+.++|++|+||||+|+.+++....... . +...
T Consensus 14 ~divGq~~i~~~L~~~i~~~~-----l~~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~~~pc~~c~~c~~i~~g~~~dv 88 (472)
T PRK14962 14 SEVVGQDHVKKLIINALKKNS-----ISHAYIFAGPRGTGKTTVARILAKSLNCENRKGVEPCNECRACRSIDEGTFMDV 88 (472)
T ss_pred HHccCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCCCcccHHHHHHhcCCCCcc
Confidence 468999888888888776442 3356889999999999999999876432110 0 0011
Q ss_pred EEEEeCCcccHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHH-----hcCCceeEEeccccccChhHHHHhhcccCCCCC
Q 007817 231 AWVSVSDDFDVLRISRALLESITSTNCDFKTLNEVQVKLRII-----VDGKKFLLVLDDVWNENYNLWEILKAPFMAGAR 305 (588)
Q Consensus 231 ~wv~v~~~~~~~~~~~~il~~l~~~~~~~~~~~~l~~~l~~~-----l~~k~~LLVlDdv~~~~~~~~~~l~~~l~~~~~ 305 (588)
..++.+.. ...+++. .+.+. ..+++-++|+|+++..+....+.+...+.....
T Consensus 89 ~el~aa~~---------------------~gid~iR-~i~~~~~~~p~~~~~kVvIIDE~h~Lt~~a~~~LLk~LE~p~~ 146 (472)
T PRK14962 89 IELDAASN---------------------RGIDEIR-KIRDAVGYRPMEGKYKVYIIDEVHMLTKEAFNALLKTLEEPPS 146 (472)
T ss_pred EEEeCccc---------------------CCHHHHH-HHHHHHhhChhcCCeEEEEEEChHHhHHHHHHHHHHHHHhCCC
Confidence 11121111 1122221 11111 234567999999976655566667666655444
Q ss_pred CcEEEEeecc-hhhhhhc-cccceeeCCCCCHHHHHHHHHHhhcCCCCCCCChhHHHHHHHHHHHhCC-CchHHHHhhhh
Q 007817 306 NSKIIVTTCH-SNVASMM-GSVEHYNLKLLSDEYCWSVFVKHAFERRDAGAHQFSKLFRKKIVAKCGG-LPLAVSTLGGL 382 (588)
Q Consensus 306 gs~ilvTTR~-~~v~~~~-~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~i~~~I~~~c~G-lPLai~~~~~~ 382 (588)
...+|++|.+ ..+...+ .....+++.+++.++....+.+.+...+..- ..+....|++.++| ++.++..+-.+
T Consensus 147 ~vv~Ilattn~~kl~~~L~SR~~vv~f~~l~~~el~~~L~~i~~~egi~i----~~eal~~Ia~~s~GdlR~aln~Le~l 222 (472)
T PRK14962 147 HVVFVLATTNLEKVPPTIISRCQVIEFRNISDELIIKRLQEVAEAEGIEI----DREALSFIAKRASGGLRDALTMLEQV 222 (472)
T ss_pred cEEEEEEeCChHhhhHHHhcCcEEEEECCccHHHHHHHHHHHHHHcCCCC----CHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 4555545443 3333322 2446899999999999999888764322211 22335568887754 56777776654
Q ss_pred ccC---CCCHHHHHHHHh
Q 007817 383 LRT---RHTEDAWEEIVS 397 (588)
Q Consensus 383 L~~---~~~~~~w~~~~~ 397 (588)
... .-+.+....++.
T Consensus 223 ~~~~~~~It~e~V~~~l~ 240 (472)
T PRK14962 223 WKFSEGKITLETVHEALG 240 (472)
T ss_pred HHhcCCCCCHHHHHHHHc
Confidence 321 235555555443
No 48
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=98.49 E-value=2.2e-06 Score=93.27 Aligned_cols=194 Identities=11% Similarity=0.099 Sum_probs=112.5
Q ss_pred CceeechhhHHHHHHHHhcCCCCCCCCeEEEEEEccCCCcHHHHHHHHHcccccccccccEEEEEEeCCcccHHHHHHHH
Q 007817 169 RAVYGRDEDKARMLEMVLSDDPTTDANFCVIPIVGMAGAGKTMLAREVYNDRAVQNFKFDVKAWVSVSDDFDVLRISRAL 248 (588)
Q Consensus 169 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i 248 (588)
.+++|.+..++.|..++.... -...+.++|+.|+||||+|+.+.+...... ... +..+.. -.....+
T Consensus 16 ddIIGQe~vv~~L~~ai~~~r-----l~Ha~Lf~GP~GvGKTTlAriLAk~LnC~~-~~~---~~pCg~----C~sCr~i 82 (709)
T PRK08691 16 ADLVGQEHVVKALQNALDEGR-----LHHAYLLTGTRGVGKTTIARILAKSLNCEN-AQH---GEPCGV----CQSCTQI 82 (709)
T ss_pred HHHcCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCcHHHHHHHHHHHhcccC-CCC---CCCCcc----cHHHHHH
Confidence 468999999999999987543 346789999999999999999987543211 000 000000 0000000
Q ss_pred HHH-----hcCCCCCCCCHHHHHHHHHHH----hcCCceeEEeccccccChhHHHHhhcccCCCCCCcEEEEeecch-hh
Q 007817 249 LES-----ITSTNCDFKTLNEVQVKLRII----VDGKKFLLVLDDVWNENYNLWEILKAPFMAGARNSKIIVTTCHS-NV 318 (588)
Q Consensus 249 l~~-----l~~~~~~~~~~~~l~~~l~~~----l~~k~~LLVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTTR~~-~v 318 (588)
... +..........+.+...+... ..+++-++|||++...+....+.++..+......+.+|++|.+. .+
T Consensus 83 ~~g~~~DvlEidaAs~~gVd~IRelle~a~~~P~~gk~KVIIIDEad~Ls~~A~NALLKtLEEPp~~v~fILaTtd~~kL 162 (709)
T PRK08691 83 DAGRYVDLLEIDAASNTGIDNIREVLENAQYAPTAGKYKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATTDPHKV 162 (709)
T ss_pred hccCccceEEEeccccCCHHHHHHHHHHHHhhhhhCCcEEEEEECccccCHHHHHHHHHHHHhCCCCcEEEEEeCCcccc
Confidence 000 000000111222222222111 13566799999998776666777777776544566777766543 22
Q ss_pred hhh-ccccceeeCCCCCHHHHHHHHHHhhcCCCCCCCChhHHHHHHHHHHHhCCCchHHHHh
Q 007817 319 ASM-MGSVEHYNLKLLSDEYCWSVFVKHAFERRDAGAHQFSKLFRKKIVAKCGGLPLAVSTL 379 (588)
Q Consensus 319 ~~~-~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~i~~~I~~~c~GlPLai~~~ 379 (588)
... .+....+.+.+++.++....+.+.+-..+... .......|++.++|.+.-+..+
T Consensus 163 ~~TIrSRC~~f~f~~Ls~eeI~~~L~~Il~kEgi~i----d~eAL~~Ia~~A~GslRdAlnL 220 (709)
T PRK08691 163 PVTVLSRCLQFVLRNMTAQQVADHLAHVLDSEKIAY----EPPALQLLGRAAAGSMRDALSL 220 (709)
T ss_pred chHHHHHHhhhhcCCCCHHHHHHHHHHHHHHcCCCc----CHHHHHHHHHHhCCCHHHHHHH
Confidence 222 22335688899999999999988764332211 2234567999999988655443
No 49
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.49 E-value=7.7e-07 Score=93.23 Aligned_cols=196 Identities=15% Similarity=0.139 Sum_probs=114.1
Q ss_pred CceeechhhHHHHHHHHhcCCCCCCCCeEEEEEEccCCCcHHHHHHHHHcccccccccccEEEEEEeCCcccHHHHHHHH
Q 007817 169 RAVYGRDEDKARMLEMVLSDDPTTDANFCVIPIVGMAGAGKTMLAREVYNDRAVQNFKFDVKAWVSVSDDFDVLRISRAL 248 (588)
Q Consensus 169 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i 248 (588)
.+++|-+.-+..|..++.... -...+.++|+.|+||||+|+.+++...... .... ..+....+...+...+
T Consensus 18 ~dvVGQe~iv~~L~~~i~~~r-----i~ha~Lf~GP~GtGKTTlAriLAk~Lnce~-~~~~---~pCg~C~sC~~i~~g~ 88 (484)
T PRK14956 18 RDVIHQDLAIGALQNALKSGK-----IGHAYIFFGPRGVGKTTIARILAKRLNCEN-PIGN---EPCNECTSCLEITKGI 88 (484)
T ss_pred HHHhChHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHhcCccc-ccCc---cccCCCcHHHHHHccC
Confidence 468999988999998886542 235688999999999999999988653321 0000 0011111111111110
Q ss_pred HHH---hcC-CCCCCCCHHHHHHHHHHH-hcCCceeEEeccccccChhHHHHhhcccCCCCCCcEEEEeecc-hhhhhhc
Q 007817 249 LES---ITS-TNCDFKTLNEVQVKLRII-VDGKKFLLVLDDVWNENYNLWEILKAPFMAGARNSKIIVTTCH-SNVASMM 322 (588)
Q Consensus 249 l~~---l~~-~~~~~~~~~~l~~~l~~~-l~~k~~LLVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTTR~-~~v~~~~ 322 (588)
... +.. ...+.++..++...+... ..++.-++|||+++..+...++.++..+........+|++|.. ..+...+
T Consensus 89 ~~dviEIdaas~~gVd~IReL~e~l~~~p~~g~~KV~IIDEah~Ls~~A~NALLKtLEEPp~~viFILaTte~~kI~~TI 168 (484)
T PRK14956 89 SSDVLEIDAASNRGIENIRELRDNVKFAPMGGKYKVYIIDEVHMLTDQSFNALLKTLEEPPAHIVFILATTEFHKIPETI 168 (484)
T ss_pred CccceeechhhcccHHHHHHHHHHHHhhhhcCCCEEEEEechhhcCHHHHHHHHHHhhcCCCceEEEeecCChhhccHHH
Confidence 000 000 000111222222222221 2356679999999988888888888777654445555545443 4443332
Q ss_pred -cccceeeCCCCCHHHHHHHHHHhhcCCCCCCCChhHHHHHHHHHHHhCCCchHHH
Q 007817 323 -GSVEHYNLKLLSDEYCWSVFVKHAFERRDAGAHQFSKLFRKKIVAKCGGLPLAVS 377 (588)
Q Consensus 323 -~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~i~~~I~~~c~GlPLai~ 377 (588)
.....|.+.+++.++..+.+.+.+...+.. ...+....|++.++|.+.-+.
T Consensus 169 ~SRCq~~~f~~ls~~~i~~~L~~i~~~Egi~----~e~eAL~~Ia~~S~Gd~RdAL 220 (484)
T PRK14956 169 LSRCQDFIFKKVPLSVLQDYSEKLCKIENVQ----YDQEGLFWIAKKGDGSVRDML 220 (484)
T ss_pred HhhhheeeecCCCHHHHHHHHHHHHHHcCCC----CCHHHHHHHHHHcCChHHHHH
Confidence 234679999999999999888876432221 123345679999999985443
No 50
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.49 E-value=3e-06 Score=91.17 Aligned_cols=180 Identities=13% Similarity=0.085 Sum_probs=112.0
Q ss_pred CceeechhhHHHHHHHHhcCCCCCCCCeEEEEEEccCCCcHHHHHHHHHccccccc------------------ccccEE
Q 007817 169 RAVYGRDEDKARMLEMVLSDDPTTDANFCVIPIVGMAGAGKTMLAREVYNDRAVQN------------------FKFDVK 230 (588)
Q Consensus 169 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~------------------~~f~~~ 230 (588)
.++||-+.-++.|.+++.... -...+.++|+.|+||||+|+.+.+...-.. ..|.-+
T Consensus 16 ~divGq~~v~~~L~~~~~~~~-----l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~i~~g~~~d~ 90 (509)
T PRK14958 16 QEVIGQAPVVRALSNALDQQY-----LHHAYLFTGTRGVGKTTISRILAKCLNCEKGVSANPCNDCENCREIDEGRFPDL 90 (509)
T ss_pred HHhcCCHHHHHHHHHHHHhCC-----CCeeEEEECCCCCCHHHHHHHHHHHhcCCCCCCcccCCCCHHHHHHhcCCCceE
Confidence 468999999999999996543 345678999999999999999988653211 011112
Q ss_pred EEEEeCCcccHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHH----hcCCceeEEeccccccChhHHHHhhcccCCCCCC
Q 007817 231 AWVSVSDDFDVLRISRALLESITSTNCDFKTLNEVQVKLRII----VDGKKFLLVLDDVWNENYNLWEILKAPFMAGARN 306 (588)
Q Consensus 231 ~wv~v~~~~~~~~~~~~il~~l~~~~~~~~~~~~l~~~l~~~----l~~k~~LLVlDdv~~~~~~~~~~l~~~l~~~~~g 306 (588)
+.++.+.. ...++....+... ..++.-++|+|+++..+....+.+...+......
T Consensus 91 ~eidaas~---------------------~~v~~iR~l~~~~~~~p~~~~~kV~iIDE~~~ls~~a~naLLk~LEepp~~ 149 (509)
T PRK14958 91 FEVDAASR---------------------TKVEDTRELLDNIPYAPTKGRFKVYLIDEVHMLSGHSFNALLKTLEEPPSH 149 (509)
T ss_pred EEEccccc---------------------CCHHHHHHHHHHHhhccccCCcEEEEEEChHhcCHHHHHHHHHHHhccCCC
Confidence 22222111 1222222211111 1355668999999888777888888877766566
Q ss_pred cEEEEeecch-hhhhh-ccccceeeCCCCCHHHHHHHHHHhhcCCCCCCCChhHHHHHHHHHHHhCCCchHHHH
Q 007817 307 SKIIVTTCHS-NVASM-MGSVEHYNLKLLSDEYCWSVFVKHAFERRDAGAHQFSKLFRKKIVAKCGGLPLAVST 378 (588)
Q Consensus 307 s~ilvTTR~~-~v~~~-~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~i~~~I~~~c~GlPLai~~ 378 (588)
+++|++|.+. .+... ......+++.+++.++....+.+.+-..+.... ......|++.++|.+.-+..
T Consensus 150 ~~fIlattd~~kl~~tI~SRc~~~~f~~l~~~~i~~~l~~il~~egi~~~----~~al~~ia~~s~GslR~al~ 219 (509)
T PRK14958 150 VKFILATTDHHKLPVTVLSRCLQFHLAQLPPLQIAAHCQHLLKEENVEFE----NAALDLLARAANGSVRDALS 219 (509)
T ss_pred eEEEEEECChHhchHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCcHHHHHH
Confidence 7777665443 33222 223467899999999988877766533222111 22345688999998865444
No 51
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.47 E-value=4.7e-06 Score=90.87 Aligned_cols=198 Identities=13% Similarity=0.124 Sum_probs=114.5
Q ss_pred CceeechhhHHHHHHHHhcCCCCCCCCeEEEEEEccCCCcHHHHHHHHHcccccccc-cccEEEEEEeCCcccHHHHHHH
Q 007817 169 RAVYGRDEDKARMLEMVLSDDPTTDANFCVIPIVGMAGAGKTMLAREVYNDRAVQNF-KFDVKAWVSVSDDFDVLRISRA 247 (588)
Q Consensus 169 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~-~f~~~~wv~v~~~~~~~~~~~~ 247 (588)
.++||-+.-++.|.+++.... -...+.++|+.|+||||+|+.+.+...-.+. ....... .++..-...+.
T Consensus 16 ~dviGQe~vv~~L~~~l~~~r-----l~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~~~----~pCg~C~~C~~ 86 (618)
T PRK14951 16 SEMVGQEHVVQALTNALTQQR-----LHHAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGITA----TPCGVCQACRD 86 (618)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHHhcCCCcccccCCCC----CCCCccHHHHH
Confidence 468898888888999887543 3467789999999999999999765432110 0000000 01111111111
Q ss_pred HHHHhc-----CCCCCCCCHHHHHHHHHHH----hcCCceeEEeccccccChhHHHHhhcccCCCCCCcEEEEeecc-hh
Q 007817 248 LLESIT-----STNCDFKTLNEVQVKLRII----VDGKKFLLVLDDVWNENYNLWEILKAPFMAGARNSKIIVTTCH-SN 317 (588)
Q Consensus 248 il~~l~-----~~~~~~~~~~~l~~~l~~~----l~~k~~LLVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTTR~-~~ 317 (588)
|...-. .........+++...+... ..++.-++|||+++..+...++.++..+......+.+|++|.+ ..
T Consensus 87 i~~g~h~D~~eldaas~~~Vd~iReli~~~~~~p~~g~~KV~IIDEvh~Ls~~a~NaLLKtLEEPP~~~~fIL~Ttd~~k 166 (618)
T PRK14951 87 IDSGRFVDYTELDAASNRGVDEVQQLLEQAVYKPVQGRFKVFMIDEVHMLTNTAFNAMLKTLEEPPEYLKFVLATTDPQK 166 (618)
T ss_pred HHcCCCCceeecCcccccCHHHHHHHHHHHHhCcccCCceEEEEEChhhCCHHHHHHHHHhcccCCCCeEEEEEECCchh
Confidence 110000 0000112223332222211 1244558999999988888888888887765556666666543 33
Q ss_pred hhhh-ccccceeeCCCCCHHHHHHHHHHhhcCCCCCCCChhHHHHHHHHHHHhCCCchHHHHh
Q 007817 318 VASM-MGSVEHYNLKLLSDEYCWSVFVKHAFERRDAGAHQFSKLFRKKIVAKCGGLPLAVSTL 379 (588)
Q Consensus 318 v~~~-~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~i~~~I~~~c~GlPLai~~~ 379 (588)
+... ......+++++++.++....+.+.+...+... .......|++.++|.+--+..+
T Consensus 167 il~TIlSRc~~~~f~~Ls~eei~~~L~~i~~~egi~i----e~~AL~~La~~s~GslR~al~l 225 (618)
T PRK14951 167 VPVTVLSRCLQFNLRPMAPETVLEHLTQVLAAENVPA----EPQALRLLARAARGSMRDALSL 225 (618)
T ss_pred hhHHHHHhceeeecCCCCHHHHHHHHHHHHHHcCCCC----CHHHHHHHHHHcCCCHHHHHHH
Confidence 3322 23447899999999999999987764332211 1233566889999977555443
No 52
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.45 E-value=4.9e-06 Score=88.27 Aligned_cols=182 Identities=16% Similarity=0.144 Sum_probs=111.9
Q ss_pred CceeechhhHHHHHHHHhcCCCCCCCCeEEEEEEccCCCcHHHHHHHHHccccccc------------------ccccEE
Q 007817 169 RAVYGRDEDKARMLEMVLSDDPTTDANFCVIPIVGMAGAGKTMLAREVYNDRAVQN------------------FKFDVK 230 (588)
Q Consensus 169 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~------------------~~f~~~ 230 (588)
.++||-+.-++.|.+.+.... -...+.++|+.|+||||+|+.+++...-.. ..+.-+
T Consensus 13 ~dliGQe~vv~~L~~a~~~~r-----i~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~C~~C~~i~~~~~~Dv 87 (491)
T PRK14964 13 KDLVGQDVLVRILRNAFTLNK-----IPQSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGTCHNCISIKNSNHPDV 87 (491)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CCceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCccccHHHHHHhccCCCCE
Confidence 468999988888888876542 345789999999999999999876431100 011112
Q ss_pred EEEEeCCcccHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhcCCceeEEeccccccChhHHHHhhcccCCCCCCcEEE
Q 007817 231 AWVSVSDDFDVLRISRALLESITSTNCDFKTLNEVQVKLRIIVDGKKFLLVLDDVWNENYNLWEILKAPFMAGARNSKII 310 (588)
Q Consensus 231 ~wv~v~~~~~~~~~~~~il~~l~~~~~~~~~~~~l~~~l~~~l~~k~~LLVlDdv~~~~~~~~~~l~~~l~~~~~gs~il 310 (588)
+.++.+....+.++ +++++..... -..++.=++|+|+++..+....+.+...+....+.+.+|
T Consensus 88 ~eidaas~~~vddI-R~Iie~~~~~----------------P~~~~~KVvIIDEah~Ls~~A~NaLLK~LEePp~~v~fI 150 (491)
T PRK14964 88 IEIDAASNTSVDDI-KVILENSCYL----------------PISSKFKVYIIDEVHMLSNSAFNALLKTLEEPAPHVKFI 150 (491)
T ss_pred EEEecccCCCHHHH-HHHHHHHHhc----------------cccCCceEEEEeChHhCCHHHHHHHHHHHhCCCCCeEEE
Confidence 22333222222211 1122111100 012456689999998777777888888877666677777
Q ss_pred Eeecc-hhhhhhc-cccceeeCCCCCHHHHHHHHHHhhcCCCCCCCChhHHHHHHHHHHHhCCCchHH
Q 007817 311 VTTCH-SNVASMM-GSVEHYNLKLLSDEYCWSVFVKHAFERRDAGAHQFSKLFRKKIVAKCGGLPLAV 376 (588)
Q Consensus 311 vTTR~-~~v~~~~-~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~i~~~I~~~c~GlPLai 376 (588)
++|.. ..+...+ .....+++.+++.++....+.+.+...+... ..+....|++.++|.+-.+
T Consensus 151 latte~~Kl~~tI~SRc~~~~f~~l~~~el~~~L~~ia~~Egi~i----~~eAL~lIa~~s~GslR~a 214 (491)
T PRK14964 151 LATTEVKKIPVTIISRCQRFDLQKIPTDKLVEHLVDIAKKENIEH----DEESLKLIAENSSGSMRNA 214 (491)
T ss_pred EEeCChHHHHHHHHHhheeeecccccHHHHHHHHHHHHHHcCCCC----CHHHHHHHHHHcCCCHHHH
Confidence 66643 3443322 2446799999999999999988774332211 2233456899998887643
No 53
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=98.43 E-value=7.6e-06 Score=85.07 Aligned_cols=192 Identities=14% Similarity=0.104 Sum_probs=110.8
Q ss_pred CceeechhhHHHHHHHHhcCCCC----CCCCeEEEEEEccCCCcHHHHHHHHHcccccccccccEEEEEEeCCcccHHHH
Q 007817 169 RAVYGRDEDKARMLEMVLSDDPT----TDANFCVIPIVGMAGAGKTMLAREVYNDRAVQNFKFDVKAWVSVSDDFDVLRI 244 (588)
Q Consensus 169 ~~~vGR~~e~~~l~~~L~~~~~~----~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~ 244 (588)
.+++|-+.-++.|.+++..+... +..-...+.++|++|+|||++|..+++..--.. .- +-+++. -..
T Consensus 5 ~~IiGq~~~~~~L~~~i~~~~~~~~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~-~~----~~~Cg~----C~~ 75 (394)
T PRK07940 5 DDLVGQEAVVAELRAAARAARADVAAAGSGMTHAWLFTGPPGSGRSVAARAFAAALQCTD-PD----EPGCGE----CRA 75 (394)
T ss_pred hhccChHHHHHHHHHHHHhccccccccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCC-CC----CCCCCC----CHH
Confidence 35789999999999999765310 011346788999999999999999876432211 00 000000 000
Q ss_pred HHHHHHHhcC------CCCCCCCHHHHHHHHHHHh-----cCCceeEEeccccccChhHHHHhhcccCCCCCCcEEEEee
Q 007817 245 SRALLESITS------TNCDFKTLNEVQVKLRIIV-----DGKKFLLVLDDVWNENYNLWEILKAPFMAGARNSKIIVTT 313 (588)
Q Consensus 245 ~~~il~~l~~------~~~~~~~~~~l~~~l~~~l-----~~k~~LLVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTT 313 (588)
.+.+...-.+ +.......+++.. +.+.+ .+++-++|+|+++..+....+.+...+.....++.+|++|
T Consensus 76 C~~~~~~~hpD~~~i~~~~~~i~i~~iR~-l~~~~~~~p~~~~~kViiIDead~m~~~aanaLLk~LEep~~~~~fIL~a 154 (394)
T PRK07940 76 CRTVLAGTHPDVRVVAPEGLSIGVDEVRE-LVTIAARRPSTGRWRIVVIEDADRLTERAANALLKAVEEPPPRTVWLLCA 154 (394)
T ss_pred HHHHhcCCCCCEEEeccccccCCHHHHHH-HHHHHHhCcccCCcEEEEEechhhcCHHHHHHHHHHhhcCCCCCeEEEEE
Confidence 0001000000 0000111222221 11211 2455688999998877777777777776655667666666
Q ss_pred cch-hhhhhc-cccceeeCCCCCHHHHHHHHHHhhcCCCCCCCChhHHHHHHHHHHHhCCCchHHHHh
Q 007817 314 CHS-NVASMM-GSVEHYNLKLLSDEYCWSVFVKHAFERRDAGAHQFSKLFRKKIVAKCGGLPLAVSTL 379 (588)
Q Consensus 314 R~~-~v~~~~-~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~i~~~I~~~c~GlPLai~~~ 379 (588)
.+. .+...+ .....+.+.+++.++....+..... .+ .+.+..++..++|.|.....+
T Consensus 155 ~~~~~llpTIrSRc~~i~f~~~~~~~i~~~L~~~~~------~~---~~~a~~la~~s~G~~~~A~~l 213 (394)
T PRK07940 155 PSPEDVLPTIRSRCRHVALRTPSVEAVAEVLVRRDG------VD---PETARRAARASQGHIGRARRL 213 (394)
T ss_pred CChHHChHHHHhhCeEEECCCCCHHHHHHHHHHhcC------CC---HHHHHHHHHHcCCCHHHHHHH
Confidence 554 333332 2346899999999999988875321 11 233567899999999765444
No 54
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=98.42 E-value=5.5e-06 Score=89.27 Aligned_cols=196 Identities=14% Similarity=0.162 Sum_probs=112.3
Q ss_pred CceeechhhHHHHHHHHhcCCCCCCCCeEEEEEEccCCCcHHHHHHHHHcccccccccccEEEEEEeCCcccHHHHHHHH
Q 007817 169 RAVYGRDEDKARMLEMVLSDDPTTDANFCVIPIVGMAGAGKTMLAREVYNDRAVQNFKFDVKAWVSVSDDFDVLRISRAL 248 (588)
Q Consensus 169 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i 248 (588)
.+++|++..++.+.+++.... -...+.++|+.|+||||+|+.+++...... |... ..+..-...+.+
T Consensus 16 ~dIIGQe~iv~~L~~aI~~~r-----l~hA~Lf~GP~GvGKTTlA~~lAk~L~C~~-------~~~~-~~Cg~C~sCr~i 82 (605)
T PRK05896 16 KQIIGQELIKKILVNAILNNK-----LTHAYIFSGPRGIGKTSIAKIFAKAINCLN-------PKDG-DCCNSCSVCESI 82 (605)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CCceEEEECCCCCCHHHHHHHHHHHhcCCC-------CCCC-CCCcccHHHHHH
Confidence 468999999999999886543 346788999999999999999987643211 1110 011111111111
Q ss_pred HHHhcCC-----CCCCCCHHHHHH---HHHHH-hcCCceeEEeccccccChhHHHHhhcccCCCCCCcEEEEee-cchhh
Q 007817 249 LESITST-----NCDFKTLNEVQV---KLRII-VDGKKFLLVLDDVWNENYNLWEILKAPFMAGARNSKIIVTT-CHSNV 318 (588)
Q Consensus 249 l~~l~~~-----~~~~~~~~~l~~---~l~~~-l~~k~~LLVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTT-R~~~v 318 (588)
....... .......+++.. .+... ..+++-++|+|+++..+...++.|...+......+.+|++| ....+
T Consensus 83 ~~~~h~DiieIdaas~igVd~IReIi~~~~~~P~~~~~KVIIIDEad~Lt~~A~NaLLKtLEEPp~~tvfIL~Tt~~~KL 162 (605)
T PRK05896 83 NTNQSVDIVELDAASNNGVDEIRNIIDNINYLPTTFKYKVYIIDEAHMLSTSAWNALLKTLEEPPKHVVFIFATTEFQKI 162 (605)
T ss_pred HcCCCCceEEeccccccCHHHHHHHHHHHHhchhhCCcEEEEEechHhCCHHHHHHHHHHHHhCCCcEEEEEECCChHhh
Confidence 1110000 000111222221 11111 12334479999998777677888877776554556565555 33333
Q ss_pred hhh-ccccceeeCCCCCHHHHHHHHHHhhcCCCCCCCChhHHHHHHHHHHHhCCCch-HHHHhhh
Q 007817 319 ASM-MGSVEHYNLKLLSDEYCWSVFVKHAFERRDAGAHQFSKLFRKKIVAKCGGLPL-AVSTLGG 381 (588)
Q Consensus 319 ~~~-~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~i~~~I~~~c~GlPL-ai~~~~~ 381 (588)
... ......+++.+++.++....+...+...+. ..+ ...+..|++.++|.+- |+..+-.
T Consensus 163 l~TI~SRcq~ieF~~Ls~~eL~~~L~~il~kegi-~Is---~eal~~La~lS~GdlR~AlnlLek 223 (605)
T PRK05896 163 PLTIISRCQRYNFKKLNNSELQELLKSIAKKEKI-KIE---DNAIDKIADLADGSLRDGLSILDQ 223 (605)
T ss_pred hHHHHhhhhhcccCCCCHHHHHHHHHHHHHHcCC-CCC---HHHHHHHHHHcCCcHHHHHHHHHH
Confidence 322 223468999999999999888876633221 111 2335678999999665 4444443
No 55
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=98.42 E-value=2.7e-06 Score=94.77 Aligned_cols=172 Identities=20% Similarity=0.218 Sum_probs=96.7
Q ss_pred CceeechhhHH---HHHHHHhcCCCCCCCCeEEEEEEccCCCcHHHHHHHHHcccccccccccEEEEEEeCCcccHHHHH
Q 007817 169 RAVYGRDEDKA---RMLEMVLSDDPTTDANFCVIPIVGMAGAGKTMLAREVYNDRAVQNFKFDVKAWVSVSDDFDVLRIS 245 (588)
Q Consensus 169 ~~~vGR~~e~~---~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~ 245 (588)
.+|+|.+..+. .+.+++... ....+.|+|++|+||||||+.+++.... .|. .++.... .+
T Consensus 28 dd~vGQe~ii~~~~~L~~~i~~~------~~~slLL~GPpGtGKTTLA~aIA~~~~~---~f~---~lna~~~-~i---- 90 (725)
T PRK13341 28 EEFVGQDHILGEGRLLRRAIKAD------RVGSLILYGPPGVGKTTLARIIANHTRA---HFS---SLNAVLA-GV---- 90 (725)
T ss_pred HHhcCcHHHhhhhHHHHHHHhcC------CCceEEEECCCCCCHHHHHHHHHHHhcC---cce---eehhhhh-hh----
Confidence 45889887764 455555432 4457789999999999999999985432 331 1111100 00
Q ss_pred HHHHHHhcCCCCCCCCHHHHHHHHHHHh--cCCceeEEeccccccChhHHHHhhcccCCCCCCcEEEEe--ecchh--hh
Q 007817 246 RALLESITSTNCDFKTLNEVQVKLRIIV--DGKKFLLVLDDVWNENYNLWEILKAPFMAGARNSKIIVT--TCHSN--VA 319 (588)
Q Consensus 246 ~~il~~l~~~~~~~~~~~~l~~~l~~~l--~~k~~LLVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvT--TR~~~--v~ 319 (588)
.+..+........+ .+++.+|+|||++.-+...++.+...+. .|+.++++ |.+.. +.
T Consensus 91 --------------~dir~~i~~a~~~l~~~~~~~IL~IDEIh~Ln~~qQdaLL~~lE---~g~IiLI~aTTenp~~~l~ 153 (725)
T PRK13341 91 --------------KDLRAEVDRAKERLERHGKRTILFIDEVHRFNKAQQDALLPWVE---NGTITLIGATTENPYFEVN 153 (725)
T ss_pred --------------HHHHHHHHHHHHHhhhcCCceEEEEeChhhCCHHHHHHHHHHhc---CceEEEEEecCCChHhhhh
Confidence 01111111121111 2467899999998766666666654443 35555553 33321 11
Q ss_pred hh-ccccceeeCCCCCHHHHHHHHHHhhcCCC---CCCCChhHHHHHHHHHHHhCCCch
Q 007817 320 SM-MGSVEHYNLKLLSDEYCWSVFVKHAFERR---DAGAHQFSKLFRKKIVAKCGGLPL 374 (588)
Q Consensus 320 ~~-~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~---~~~~~~~~~~i~~~I~~~c~GlPL 374 (588)
.. ......+.+++|+.++...++.+.+-... ....-....+....|++.+.|..-
T Consensus 154 ~aL~SR~~v~~l~pLs~edi~~IL~~~l~~~~~~~g~~~v~I~deaL~~La~~s~GD~R 212 (725)
T PRK13341 154 KALVSRSRLFRLKSLSDEDLHQLLKRALQDKERGYGDRKVDLEPEAEKHLVDVANGDAR 212 (725)
T ss_pred hHhhccccceecCCCCHHHHHHHHHHHHHHHHhhcCCcccCCCHHHHHHHHHhCCCCHH
Confidence 11 12345799999999999999987653100 000111223344567788877644
No 56
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=98.42 E-value=3.8e-06 Score=81.37 Aligned_cols=152 Identities=19% Similarity=0.110 Sum_probs=88.9
Q ss_pred eEEEEEEccCCCcHHHHHHHHHcccccccccccEEEEEEeCCcccHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhcC
Q 007817 196 FCVIPIVGMAGAGKTMLAREVYNDRAVQNFKFDVKAWVSVSDDFDVLRISRALLESITSTNCDFKTLNEVQVKLRIIVDG 275 (588)
Q Consensus 196 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~il~~l~~~~~~~~~~~~l~~~l~~~l~~ 275 (588)
...+.|+|++|+|||+||+.+++.....+ . ...+++...... . + .. ..
T Consensus 42 ~~~~~l~G~~G~GKT~La~ai~~~~~~~~--~-~~~~i~~~~~~~------~----~------------------~~-~~ 89 (227)
T PRK08903 42 DRFFYLWGEAGSGRSHLLQALVADASYGG--R-NARYLDAASPLL------A----F------------------DF-DP 89 (227)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHhCC--C-cEEEEehHHhHH------H----H------------------hh-cc
Confidence 45788999999999999999998653322 2 234444432110 0 0 01 12
Q ss_pred CceeEEeccccccChhHHHHhhcccCCC-CCCc-EEEEeecchhhhh--------hccccceeeCCCCCHHHHHHHHHHh
Q 007817 276 KKFLLVLDDVWNENYNLWEILKAPFMAG-ARNS-KIIVTTCHSNVAS--------MMGSVEHYNLKLLSDEYCWSVFVKH 345 (588)
Q Consensus 276 k~~LLVlDdv~~~~~~~~~~l~~~l~~~-~~gs-~ilvTTR~~~v~~--------~~~~~~~~~l~~L~~~ea~~Lf~~~ 345 (588)
..-+||+||+...+...-..+...+... ..+. .+|+|++...... .+.....+++.++++++-..++.+.
T Consensus 90 ~~~~liiDdi~~l~~~~~~~L~~~~~~~~~~~~~~vl~~~~~~~~~~~l~~~L~sr~~~~~~i~l~pl~~~~~~~~l~~~ 169 (227)
T PRK08903 90 EAELYAVDDVERLDDAQQIALFNLFNRVRAHGQGALLVAGPAAPLALPLREDLRTRLGWGLVYELKPLSDADKIAALKAA 169 (227)
T ss_pred cCCEEEEeChhhcCchHHHHHHHHHHHHHHcCCcEEEEeCCCCHHhCCCCHHHHHHHhcCeEEEecCCCHHHHHHHHHHH
Confidence 3457999999654433333343333221 2333 3666666432211 1122368999999998877777664
Q ss_pred hcCCCCCCCChhHHHHHHHHHHHhCCCchHHHHhhhhc
Q 007817 346 AFERRDAGAHQFSKLFRKKIVAKCGGLPLAVSTLGGLL 383 (588)
Q Consensus 346 a~~~~~~~~~~~~~~i~~~I~~~c~GlPLai~~~~~~L 383 (588)
+-..+. . ..++....+++.+.|++..+..+...+
T Consensus 170 ~~~~~v-~---l~~~al~~L~~~~~gn~~~l~~~l~~l 203 (227)
T PRK08903 170 AAERGL-Q---LADEVPDYLLTHFRRDMPSLMALLDAL 203 (227)
T ss_pred HHHcCC-C---CCHHHHHHHHHhccCCHHHHHHHHHHH
Confidence 422121 1 223445668889999999988776665
No 57
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.41 E-value=4.3e-06 Score=87.77 Aligned_cols=199 Identities=13% Similarity=0.112 Sum_probs=113.4
Q ss_pred CceeechhhHHHHHHHHhcCCCCCCCCeEEEEEEccCCCcHHHHHHHHHcccccccccccEEEEEE-eCCcccHHHHHHH
Q 007817 169 RAVYGRDEDKARMLEMVLSDDPTTDANFCVIPIVGMAGAGKTMLAREVYNDRAVQNFKFDVKAWVS-VSDDFDVLRISRA 247 (588)
Q Consensus 169 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~wv~-v~~~~~~~~~~~~ 247 (588)
.+++|.+.-++.|..++.... -...+.++|+.|+||||+|..+++...-.. ..+...|.. ...+...-...+.
T Consensus 16 ~eiiGq~~~~~~L~~~~~~~~-----~~ha~lf~Gp~G~GKtt~A~~~a~~l~c~~-~~~~~~~~~~~~~~c~~c~~c~~ 89 (397)
T PRK14955 16 ADITAQEHITRTIQNSLRMGR-----VGHGYIFSGLRGVGKTTAARVFAKAVNCQR-MIDDADYLQEVTEPCGECESCRD 89 (397)
T ss_pred hhccChHHHHHHHHHHHHhCC-----cceeEEEECCCCCCHHHHHHHHHHHhcCCC-CcCcccccccCCCCCCCCHHHHH
Confidence 468899988888988886542 235688999999999999999987653321 111111110 0011111111111
Q ss_pred HHHHhcC-----CCCCCCCHHHHHHHHHHHh-----cCCceeEEeccccccChhHHHHhhcccCCCCCCcEEEEee-cch
Q 007817 248 LLESITS-----TNCDFKTLNEVQVKLRIIV-----DGKKFLLVLDDVWNENYNLWEILKAPFMAGARNSKIIVTT-CHS 316 (588)
Q Consensus 248 il~~l~~-----~~~~~~~~~~l~~~l~~~l-----~~k~~LLVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTT-R~~ 316 (588)
+...... ........+++.. +.+.+ .+++-++|+|+++..+...++.+...+....+.+.+|++| +..
T Consensus 90 ~~~~~~~n~~~~~~~~~~~id~Ir~-l~~~~~~~p~~~~~kvvIIdea~~l~~~~~~~LLk~LEep~~~t~~Il~t~~~~ 168 (397)
T PRK14955 90 FDAGTSLNISEFDAASNNSVDDIRL-LRENVRYGPQKGRYRVYIIDEVHMLSIAAFNAFLKTLEEPPPHAIFIFATTELH 168 (397)
T ss_pred HhcCCCCCeEeecccccCCHHHHHH-HHHHHhhchhcCCeEEEEEeChhhCCHHHHHHHHHHHhcCCCCeEEEEEeCChH
Confidence 1110000 0001111333332 22222 2455689999998777677888887777655566666555 333
Q ss_pred hhhhhcc-ccceeeCCCCCHHHHHHHHHHhhcCCCCCCCChhHHHHHHHHHHHhCCCchHHHH
Q 007817 317 NVASMMG-SVEHYNLKLLSDEYCWSVFVKHAFERRDAGAHQFSKLFRKKIVAKCGGLPLAVST 378 (588)
Q Consensus 317 ~v~~~~~-~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~i~~~I~~~c~GlPLai~~ 378 (588)
.+...+. ....+++.++++++....+...+-..+. ....+.+..|++.++|.+--+..
T Consensus 169 kl~~tl~sR~~~v~f~~l~~~ei~~~l~~~~~~~g~----~i~~~al~~l~~~s~g~lr~a~~ 227 (397)
T PRK14955 169 KIPATIASRCQRFNFKRIPLEEIQQQLQGICEAEGI----SVDADALQLIGRKAQGSMRDAQS 227 (397)
T ss_pred HhHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHcCC----CCCHHHHHHHHHHcCCCHHHHHH
Confidence 3333222 3357899999999999888876632221 12233456799999998754433
No 58
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=98.40 E-value=4.8e-07 Score=87.92 Aligned_cols=91 Identities=22% Similarity=0.200 Sum_probs=63.3
Q ss_pred CeEEEEEEccCCCcHHHHHHHHHcccccccccccEEEEEEeCCc--ccHHHHHHHHHHHhcCCCCCCCCHH------HHH
Q 007817 195 NFCVIPIVGMAGAGKTMLAREVYNDRAVQNFKFDVKAWVSVSDD--FDVLRISRALLESITSTNCDFKTLN------EVQ 266 (588)
Q Consensus 195 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~wv~v~~~--~~~~~~~~~il~~l~~~~~~~~~~~------~l~ 266 (588)
.-..++|+|++|+|||||++.++++.... +|+.++|+.+... .++.++++.+...+-....+..... ...
T Consensus 15 ~Gqr~~I~G~~G~GKTTLlr~I~n~l~~~--~fdv~~~v~vI~er~~ev~el~~~I~~~~v~~~~~~~~~~~~~~~~~~~ 92 (249)
T cd01128 15 KGQRGLIVAPPKAGKTTLLQSIANAITKN--HPEVYLIVLLIDERPEEVTDMQRSVKGEVIASTFDEPPERHVQVAEMVL 92 (249)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhccccc--cCCeEEEEEEccCCCccHHHHHHHhccEEEEecCCCCHHHHHHHHHHHH
Confidence 34688999999999999999999987654 7999999997766 7899999998443332221211111 112
Q ss_pred HHHHHH-hcCCceeEEeccccc
Q 007817 267 VKLRII-VDGKKFLLVLDDVWN 287 (588)
Q Consensus 267 ~~l~~~-l~~k~~LLVlDdv~~ 287 (588)
.....+ -.|++.+|++|++..
T Consensus 93 ~~a~~~~~~G~~vll~iDei~r 114 (249)
T cd01128 93 EKAKRLVEHGKDVVILLDSITR 114 (249)
T ss_pred HHHHHHHHCCCCEEEEEECHHH
Confidence 222222 258999999999943
No 59
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.40 E-value=6.6e-06 Score=89.06 Aligned_cols=181 Identities=14% Similarity=0.136 Sum_probs=110.8
Q ss_pred CceeechhhHHHHHHHHhcCCCCCCCCeEEEEEEccCCCcHHHHHHHHHcccccccc------------------cccEE
Q 007817 169 RAVYGRDEDKARMLEMVLSDDPTTDANFCVIPIVGMAGAGKTMLAREVYNDRAVQNF------------------KFDVK 230 (588)
Q Consensus 169 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~------------------~f~~~ 230 (588)
.+++|-+.-++.|..++.... -...+.++|+.|+||||+|+.+.+....... .|.-.
T Consensus 16 ~divGq~~v~~~L~~~i~~~~-----~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pcg~C~~C~~i~~~~~~d~ 90 (527)
T PRK14969 16 SELVGQEHVVRALTNALEQQR-----LHHAYLFTGTRGVGKTTLARILAKSLNCETGVTATPCGVCSACLEIDSGRFVDL 90 (527)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CCEEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCce
Confidence 468899999999999987543 2356789999999999999999875532110 01111
Q ss_pred EEEEeCCcccHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHH----hcCCceeEEeccccccChhHHHHhhcccCCCCCC
Q 007817 231 AWVSVSDDFDVLRISRALLESITSTNCDFKTLNEVQVKLRII----VDGKKFLLVLDDVWNENYNLWEILKAPFMAGARN 306 (588)
Q Consensus 231 ~wv~v~~~~~~~~~~~~il~~l~~~~~~~~~~~~l~~~l~~~----l~~k~~LLVlDdv~~~~~~~~~~l~~~l~~~~~g 306 (588)
+++..+. ....+++...+... ..+++-++|+|+++..+....+.+...+......
T Consensus 91 ~ei~~~~---------------------~~~vd~ir~l~~~~~~~p~~~~~kVvIIDEad~ls~~a~naLLK~LEepp~~ 149 (527)
T PRK14969 91 IEVDAAS---------------------NTQVDAMRELLDNAQYAPTRGRFKVYIIDEVHMLSKSAFNAMLKTLEEPPEH 149 (527)
T ss_pred eEeeccc---------------------cCCHHHHHHHHHHHhhCcccCCceEEEEcCcccCCHHHHHHHHHHHhCCCCC
Confidence 1221111 11222222211111 1356679999999887777777777777665556
Q ss_pred cEEEEeecch-hhhhh-ccccceeeCCCCCHHHHHHHHHHhhcCCCCCCCChhHHHHHHHHHHHhCCCch-HHHHh
Q 007817 307 SKIIVTTCHS-NVASM-MGSVEHYNLKLLSDEYCWSVFVKHAFERRDAGAHQFSKLFRKKIVAKCGGLPL-AVSTL 379 (588)
Q Consensus 307 s~ilvTTR~~-~v~~~-~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~i~~~I~~~c~GlPL-ai~~~ 379 (588)
+.+|++|.+. .+... ......+++.+++.++....+.+.+...+. .. .......|++.++|.+- |+..+
T Consensus 150 ~~fIL~t~d~~kil~tI~SRc~~~~f~~l~~~~i~~~L~~il~~egi-~~---~~~al~~la~~s~Gslr~al~ll 221 (527)
T PRK14969 150 VKFILATTDPQKIPVTVLSRCLQFNLKQMPPPLIVSHLQHILEQENI-PF---DATALQLLARAAAGSMRDALSLL 221 (527)
T ss_pred EEEEEEeCChhhCchhHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCC-CC---CHHHHHHHHHHcCCCHHHHHHHH
Confidence 6666655443 33222 123467999999999999888876532221 11 12234568999999775 33333
No 60
>PRK08727 hypothetical protein; Validated
Probab=98.40 E-value=4.5e-06 Score=80.93 Aligned_cols=148 Identities=17% Similarity=0.093 Sum_probs=86.9
Q ss_pred EEEEEEccCCCcHHHHHHHHHcccccccccccEEEEEEeCCcccHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhcCC
Q 007817 197 CVIPIVGMAGAGKTMLAREVYNDRAVQNFKFDVKAWVSVSDDFDVLRISRALLESITSTNCDFKTLNEVQVKLRIIVDGK 276 (588)
Q Consensus 197 ~vv~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~il~~l~~~~~~~~~~~~l~~~l~~~l~~k 276 (588)
..+.|+|++|+|||.|++.+++....++ ..+.|+++.+ ....+. ..+.. + .+
T Consensus 42 ~~l~l~G~~G~GKThL~~a~~~~~~~~~---~~~~y~~~~~------~~~~~~-----------------~~~~~-l-~~ 93 (233)
T PRK08727 42 DWLYLSGPAGTGKTHLALALCAAAEQAG---RSSAYLPLQA------AAGRLR-----------------DALEA-L-EG 93 (233)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcC---CcEEEEeHHH------hhhhHH-----------------HHHHH-H-hc
Confidence 4599999999999999999988754432 2445665432 111111 11111 1 23
Q ss_pred ceeEEeccccccC-hhHHHH-hhcccCC-CCCCcEEEEeecchhh---------hhhccccceeeCCCCCHHHHHHHHHH
Q 007817 277 KFLLVLDDVWNEN-YNLWEI-LKAPFMA-GARNSKIIVTTCHSNV---------ASMMGSVEHYNLKLLSDEYCWSVFVK 344 (588)
Q Consensus 277 ~~LLVlDdv~~~~-~~~~~~-l~~~l~~-~~~gs~ilvTTR~~~v---------~~~~~~~~~~~l~~L~~~ea~~Lf~~ 344 (588)
.-+|||||+.... ...|.. +...+.. ...|..||+|++...- ...+.....+++++++.++-..++.+
T Consensus 94 ~dlLiIDDi~~l~~~~~~~~~lf~l~n~~~~~~~~vI~ts~~~p~~l~~~~~dL~SRl~~~~~~~l~~~~~e~~~~iL~~ 173 (233)
T PRK08727 94 RSLVALDGLESIAGQREDEVALFDFHNRARAAGITLLYTARQMPDGLALVLPDLRSRLAQCIRIGLPVLDDVARAAVLRE 173 (233)
T ss_pred CCEEEEeCcccccCChHHHHHHHHHHHHHHHcCCeEEEECCCChhhhhhhhHHHHHHHhcCceEEecCCCHHHHHHHHHH
Confidence 4599999996432 122332 2222221 1246679999975311 11222346899999999999999998
Q ss_pred hhcCCCCCCCChhHHHHHHHHHHHhCCCchHH
Q 007817 345 HAFERRDAGAHQFSKLFRKKIVAKCGGLPLAV 376 (588)
Q Consensus 345 ~a~~~~~~~~~~~~~~i~~~I~~~c~GlPLai 376 (588)
++...+- . -..+...-|++.++|-.-.+
T Consensus 174 ~a~~~~l-~---l~~e~~~~La~~~~rd~r~~ 201 (233)
T PRK08727 174 RAQRRGL-A---LDEAAIDWLLTHGERELAGL 201 (233)
T ss_pred HHHHcCC-C---CCHHHHHHHHHhCCCCHHHH
Confidence 7643222 1 22334456888887766555
No 61
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=98.39 E-value=8.5e-06 Score=80.23 Aligned_cols=157 Identities=13% Similarity=0.131 Sum_probs=97.7
Q ss_pred CeEEEEEEccCCCcHHHHHHHHHcccccccccccEEEEEEeCCcccHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhc
Q 007817 195 NFCVIPIVGMAGAGKTMLAREVYNDRAVQNFKFDVKAWVSVSDDFDVLRISRALLESITSTNCDFKTLNEVQVKLRIIVD 274 (588)
Q Consensus 195 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~il~~l~~~~~~~~~~~~l~~~l~~~l~ 274 (588)
.++.+.+||++|+||||||+.+.+..+... ..||..|....-..-.+.|+++-. -...+.
T Consensus 161 ~ipSmIlWGppG~GKTtlArlia~tsk~~S-----yrfvelSAt~a~t~dvR~ife~aq---------------~~~~l~ 220 (554)
T KOG2028|consen 161 RIPSMILWGPPGTGKTTLARLIASTSKKHS-----YRFVELSATNAKTNDVRDIFEQAQ---------------NEKSLT 220 (554)
T ss_pred CCCceEEecCCCCchHHHHHHHHhhcCCCc-----eEEEEEeccccchHHHHHHHHHHH---------------HHHhhh
Confidence 567889999999999999999998755432 445666654333333344443321 112345
Q ss_pred CCceeEEeccccccChhHHHHhhcccCCCCCCcEEEE--eecchhhhh---hccccceeeCCCCCHHHHHHHHHHhhc--
Q 007817 275 GKKFLLVLDDVWNENYNLWEILKAPFMAGARNSKIIV--TTCHSNVAS---MMGSVEHYNLKLLSDEYCWSVFVKHAF-- 347 (588)
Q Consensus 275 ~k~~LLVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilv--TTR~~~v~~---~~~~~~~~~l~~L~~~ea~~Lf~~~a~-- 347 (588)
++|.+|.+|.|+.-+..+-+. .||.-.+|.-++| ||.++..-- .+....++.|++|+.++...++.+...
T Consensus 221 krkTilFiDEiHRFNksQQD~---fLP~VE~G~I~lIGATTENPSFqln~aLlSRC~VfvLekL~~n~v~~iL~raia~l 297 (554)
T KOG2028|consen 221 KRKTILFIDEIHRFNKSQQDT---FLPHVENGDITLIGATTENPSFQLNAALLSRCRVFVLEKLPVNAVVTILMRAIASL 297 (554)
T ss_pred cceeEEEeHHhhhhhhhhhhc---ccceeccCceEEEecccCCCccchhHHHHhccceeEeccCCHHHHHHHHHHHHHhh
Confidence 789999999997655433333 2455556776665 666654321 233557899999999999999887432
Q ss_pred -CCCC---C-CCC--hhHHHHHHHHHHHhCCCch
Q 007817 348 -ERRD---A-GAH--QFSKLFRKKIVAKCGGLPL 374 (588)
Q Consensus 348 -~~~~---~-~~~--~~~~~i~~~I~~~c~GlPL 374 (588)
.... . +.+ .....+.+-++..|.|-.-
T Consensus 298 ~dser~~~~l~n~s~~ve~siidyla~lsdGDaR 331 (554)
T KOG2028|consen 298 GDSERPTDPLPNSSMFVEDSIIDYLAYLSDGDAR 331 (554)
T ss_pred ccccccCCCCCCcchhhhHHHHHHHHHhcCchHH
Confidence 1111 1 111 1234456667778888654
No 62
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=98.39 E-value=7.9e-06 Score=89.23 Aligned_cols=198 Identities=13% Similarity=0.094 Sum_probs=115.8
Q ss_pred CceeechhhHHHHHHHHhcCCCCCCCCeEEEEEEccCCCcHHHHHHHHHccccccccccc--EEEEEEeCCcccHHHHHH
Q 007817 169 RAVYGRDEDKARMLEMVLSDDPTTDANFCVIPIVGMAGAGKTMLAREVYNDRAVQNFKFD--VKAWVSVSDDFDVLRISR 246 (588)
Q Consensus 169 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~~f~--~~~wv~v~~~~~~~~~~~ 246 (588)
.+++|.+..++.|.+++.... -...+.++|+.|+||||+|+.+++...... ... ...+- .+..-...+
T Consensus 24 ~dliGq~~~v~~L~~~~~~gr-----i~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~-~~~~~~~~~~----~cg~c~~C~ 93 (598)
T PRK09111 24 DDLIGQEAMVRTLTNAFETGR-----IAQAFMLTGVRGVGKTTTARILARALNYEG-PDGDGGPTID----LCGVGEHCQ 93 (598)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CCceEEEECCCCCCHHHHHHHHHHhhCcCC-ccccCCCccc----cCcccHHHH
Confidence 468999999999999987543 345788999999999999999988653221 000 00000 000011111
Q ss_pred HHHHHhcCC-----CCCCCCHHHHHHH---HHHH-hcCCceeEEeccccccChhHHHHhhcccCCCCCCcEEEEee-cch
Q 007817 247 ALLESITST-----NCDFKTLNEVQVK---LRII-VDGKKFLLVLDDVWNENYNLWEILKAPFMAGARNSKIIVTT-CHS 316 (588)
Q Consensus 247 ~il~~l~~~-----~~~~~~~~~l~~~---l~~~-l~~k~~LLVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTT-R~~ 316 (588)
.|...-... .......+++... +... ..+++-++|+|+++..+....+.|...+.....++.+|++| ...
T Consensus 94 ~i~~g~h~Dv~e~~a~s~~gvd~IReIie~~~~~P~~a~~KVvIIDEad~Ls~~a~naLLKtLEePp~~~~fIl~tte~~ 173 (598)
T PRK09111 94 AIMEGRHVDVLEMDAASHTGVDDIREIIESVRYRPVSARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHVKFIFATTEIR 173 (598)
T ss_pred HHhcCCCCceEEecccccCCHHHHHHHHHHHHhchhcCCcEEEEEEChHhCCHHHHHHHHHHHHhCCCCeEEEEEeCChh
Confidence 121111000 0011223332222 1111 12445589999998777777788887776655667776655 333
Q ss_pred hhhhhc-cccceeeCCCCCHHHHHHHHHHhhcCCCCCCCChhHHHHHHHHHHHhCCCchHHHHhh
Q 007817 317 NVASMM-GSVEHYNLKLLSDEYCWSVFVKHAFERRDAGAHQFSKLFRKKIVAKCGGLPLAVSTLG 380 (588)
Q Consensus 317 ~v~~~~-~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~i~~~I~~~c~GlPLai~~~~ 380 (588)
.+...+ .....+++.+++.++....+.+.+-..+.. . ..+....|++.++|.+.-+....
T Consensus 174 kll~tI~SRcq~~~f~~l~~~el~~~L~~i~~kegi~-i---~~eAl~lIa~~a~Gdlr~al~~L 234 (598)
T PRK09111 174 KVPVTVLSRCQRFDLRRIEADVLAAHLSRIAAKEGVE-V---EDEALALIARAAEGSVRDGLSLL 234 (598)
T ss_pred hhhHHHHhheeEEEecCCCHHHHHHHHHHHHHHcCCC-C---CHHHHHHHHHHcCCCHHHHHHHH
Confidence 333222 234679999999999999998876432221 1 12345678999999887654433
No 63
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=98.37 E-value=9.6e-06 Score=91.59 Aligned_cols=191 Identities=14% Similarity=0.101 Sum_probs=112.9
Q ss_pred CceeechhhHHHHHHHHhcCCCCCCCCeEEEEEEccCCCcHHHHHHHHHcccccccccccEEEEEEeCCcccHHHHHHHH
Q 007817 169 RAVYGRDEDKARMLEMVLSDDPTTDANFCVIPIVGMAGAGKTMLAREVYNDRAVQNFKFDVKAWVSVSDDFDVLRISRAL 248 (588)
Q Consensus 169 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i 248 (588)
.++||.+..++.|..++.... -...+.++|+.|+||||+|+.+.+...-.. .... ..+..-...+.|
T Consensus 15 ~eiiGqe~v~~~L~~~i~~~r-----i~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~-~~~~-------~pCg~C~sC~~~ 81 (824)
T PRK07764 15 AEVIGQEHVTEPLSTALDSGR-----INHAYLFSGPRGCGKTSSARILARSLNCVE-GPTS-------TPCGECDSCVAL 81 (824)
T ss_pred HHhcCcHHHHHHHHHHHHhCC-----CCceEEEECCCCCCHHHHHHHHHHHhCccc-CCCC-------CCCcccHHHHHH
Confidence 468999999999999987543 235688999999999999999987653211 1000 000000001111
Q ss_pred HHH-------hcCCCCCCCCHHHHHHHHHHH-----hcCCceeEEeccccccChhHHHHhhcccCCCCCCcEEEEeecc-
Q 007817 249 LES-------ITSTNCDFKTLNEVQVKLRII-----VDGKKFLLVLDDVWNENYNLWEILKAPFMAGARNSKIIVTTCH- 315 (588)
Q Consensus 249 l~~-------l~~~~~~~~~~~~l~~~l~~~-----l~~k~~LLVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTTR~- 315 (588)
... +.........++++.. +++. ..++.-++|||+++..+...++.|+..+..-...+.+|++|.+
T Consensus 82 ~~g~~~~~dv~eidaas~~~Vd~iR~-l~~~~~~~p~~~~~KV~IIDEad~lt~~a~NaLLK~LEEpP~~~~fIl~tt~~ 160 (824)
T PRK07764 82 APGGPGSLDVTEIDAASHGGVDDARE-LRERAFFAPAESRYKIFIIDEAHMVTPQGFNALLKIVEEPPEHLKFIFATTEP 160 (824)
T ss_pred HcCCCCCCcEEEecccccCCHHHHHH-HHHHHHhchhcCCceEEEEechhhcCHHHHHHHHHHHhCCCCCeEEEEEeCCh
Confidence 000 0000001112233222 1111 2355568999999888888888888888776666666665543
Q ss_pred hhhhhhc-cccceeeCCCCCHHHHHHHHHHhhcCCCCCCCChhHHHHHHHHHHHhCCCchHHH
Q 007817 316 SNVASMM-GSVEHYNLKLLSDEYCWSVFVKHAFERRDAGAHQFSKLFRKKIVAKCGGLPLAVS 377 (588)
Q Consensus 316 ~~v~~~~-~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~i~~~I~~~c~GlPLai~ 377 (588)
..+...+ .....|++..++.++...++.+..-..+. .. .......|++.++|.+..+.
T Consensus 161 ~kLl~TIrSRc~~v~F~~l~~~~l~~~L~~il~~EGv-~i---d~eal~lLa~~sgGdlR~Al 219 (824)
T PRK07764 161 DKVIGTIRSRTHHYPFRLVPPEVMRGYLERICAQEGV-PV---EPGVLPLVIRAGGGSVRDSL 219 (824)
T ss_pred hhhhHHHHhheeEEEeeCCCHHHHHHHHHHHHHHcCC-CC---CHHHHHHHHHHcCCCHHHHH
Confidence 3343332 24578999999999999888776532221 11 12234568999999884433
No 64
>PRK09087 hypothetical protein; Validated
Probab=98.36 E-value=1e-05 Score=77.87 Aligned_cols=144 Identities=15% Similarity=0.082 Sum_probs=86.2
Q ss_pred EEEEEEccCCCcHHHHHHHHHcccccccccccEEEEEEeCCcccHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhcCC
Q 007817 197 CVIPIVGMAGAGKTMLAREVYNDRAVQNFKFDVKAWVSVSDDFDVLRISRALLESITSTNCDFKTLNEVQVKLRIIVDGK 276 (588)
Q Consensus 197 ~vv~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~il~~l~~~~~~~~~~~~l~~~l~~~l~~k 276 (588)
+.+.|+|++|+|||+|++.+++.... .+++.. .+...++..+ .+
T Consensus 45 ~~l~l~G~~GsGKThLl~~~~~~~~~--------~~i~~~------~~~~~~~~~~---------------------~~- 88 (226)
T PRK09087 45 PVVVLAGPVGSGKTHLASIWREKSDA--------LLIHPN------EIGSDAANAA---------------------AE- 88 (226)
T ss_pred CeEEEECCCCCCHHHHHHHHHHhcCC--------EEecHH------HcchHHHHhh---------------------hc-
Confidence 56899999999999999998875321 123221 1111111111 11
Q ss_pred ceeEEecccccc--ChhHHHHhhcccCCCCCCcEEEEeecch---------hhhhhccccceeeCCCCCHHHHHHHHHHh
Q 007817 277 KFLLVLDDVWNE--NYNLWEILKAPFMAGARNSKIIVTTCHS---------NVASMMGSVEHYNLKLLSDEYCWSVFVKH 345 (588)
Q Consensus 277 ~~LLVlDdv~~~--~~~~~~~l~~~l~~~~~gs~ilvTTR~~---------~v~~~~~~~~~~~l~~L~~~ea~~Lf~~~ 345 (588)
-+|++||+... ++..+-.+...+. ..|..+|+|++.. .....+.....+++++++.++-.+++.+.
T Consensus 89 -~~l~iDDi~~~~~~~~~lf~l~n~~~--~~g~~ilits~~~p~~~~~~~~dL~SRl~~gl~~~l~~pd~e~~~~iL~~~ 165 (226)
T PRK09087 89 -GPVLIEDIDAGGFDETGLFHLINSVR--QAGTSLLMTSRLWPSSWNVKLPDLKSRLKAATVVEIGEPDDALLSQVIFKL 165 (226)
T ss_pred -CeEEEECCCCCCCCHHHHHHHHHHHH--hCCCeEEEECCCChHHhccccccHHHHHhCCceeecCCCCHHHHHHHHHHH
Confidence 27888999543 2222222222222 2366799988742 23333445678999999999999999988
Q ss_pred hcCCCCCCCChhHHHHHHHHHHHhCCCchHHHHhhhhc
Q 007817 346 AFERRDAGAHQFSKLFRKKIVAKCGGLPLAVSTLGGLL 383 (588)
Q Consensus 346 a~~~~~~~~~~~~~~i~~~I~~~c~GlPLai~~~~~~L 383 (588)
+-..+- . -.+++..-|++.+.|..-++..+-..|
T Consensus 166 ~~~~~~-~---l~~ev~~~La~~~~r~~~~l~~~l~~L 199 (226)
T PRK09087 166 FADRQL-Y---VDPHVVYYLVSRMERSLFAAQTIVDRL 199 (226)
T ss_pred HHHcCC-C---CCHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 743221 1 223445668888888877776544333
No 65
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=98.32 E-value=1.4e-06 Score=88.46 Aligned_cols=101 Identities=21% Similarity=0.267 Sum_probs=66.9
Q ss_pred HHHHHHhcCCCCCCCCeEEEEEEccCCCcHHHHHHHHHcccccccccccEEEEEEeCCcc--cHHHHHHHHHHHhcCCCC
Q 007817 180 RMLEMVLSDDPTTDANFCVIPIVGMAGAGKTMLAREVYNDRAVQNFKFDVKAWVSVSDDF--DVLRISRALLESITSTNC 257 (588)
Q Consensus 180 ~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~wv~v~~~~--~~~~~~~~il~~l~~~~~ 257 (588)
++++++..- +.-+..+|+|++|+||||||+.+|++...+ +|++++||.+.+.. .+.++++.+...+-....
T Consensus 158 rvID~l~PI-----GkGQR~lIvgppGvGKTTLaK~Ian~I~~n--hFDv~~~VvLIgER~~EVtdiqrsIlg~vv~st~ 230 (416)
T PRK09376 158 RIIDLIAPI-----GKGQRGLIVAPPKAGKTVLLQNIANSITTN--HPEVHLIVLLIDERPEEVTDMQRSVKGEVVASTF 230 (416)
T ss_pred eeeeeeccc-----ccCceEEEeCCCCCChhHHHHHHHHHHHhh--cCCeEEEEEEeCCchhHHHHHHHHhcCcEEEECC
Confidence 455555432 233578899999999999999999987664 79999999998887 777888887643322221
Q ss_pred CCCCHHHH------HHHHHHH-hcCCceeEEeccccc
Q 007817 258 DFKTLNEV------QVKLRII-VDGKKFLLVLDDVWN 287 (588)
Q Consensus 258 ~~~~~~~l------~~~l~~~-l~~k~~LLVlDdv~~ 287 (588)
+....... ...-..+ -.|+.++|++|++..
T Consensus 231 d~~~~~~~~~a~~~ie~Ae~~~e~G~dVlL~iDsItR 267 (416)
T PRK09376 231 DEPAERHVQVAEMVIEKAKRLVEHGKDVVILLDSITR 267 (416)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEEEChHH
Confidence 21111111 1111111 368999999999943
No 66
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.31 E-value=7.1e-06 Score=90.31 Aligned_cols=195 Identities=12% Similarity=0.086 Sum_probs=114.1
Q ss_pred CceeechhhHHHHHHHHhcCCCCCCCCeEEEEEEccCCCcHHHHHHHHHcccccccccccEEEEEEeCCcccHHHHHHHH
Q 007817 169 RAVYGRDEDKARMLEMVLSDDPTTDANFCVIPIVGMAGAGKTMLAREVYNDRAVQNFKFDVKAWVSVSDDFDVLRISRAL 248 (588)
Q Consensus 169 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i 248 (588)
.+++|-+.-++.|..++.... -...+.++|+.|+||||+|+.+++...... ... -...++.-...+.+
T Consensus 16 ~eiiGq~~~~~~L~~~i~~~~-----i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~~-~~~------~~~~c~~c~~c~~i 83 (585)
T PRK14950 16 AELVGQEHVVQTLRNAIAEGR-----VAHAYLFTGPRGVGKTSTARILAKAVNCTT-NDP------KGRPCGTCEMCRAI 83 (585)
T ss_pred HHhcCCHHHHHHHHHHHHhCC-----CceEEEEECCCCCCHHHHHHHHHHHhcCCC-CCC------CCCCCccCHHHHHH
Confidence 468999999999988886542 335678999999999999999987543211 000 00111112222333
Q ss_pred HHHhcCC-----CCCCCCHHHHHHHHHHHh-----cCCceeEEeccccccChhHHHHhhcccCCCCCCcEEEEeecc-hh
Q 007817 249 LESITST-----NCDFKTLNEVQVKLRIIV-----DGKKFLLVLDDVWNENYNLWEILKAPFMAGARNSKIIVTTCH-SN 317 (588)
Q Consensus 249 l~~l~~~-----~~~~~~~~~l~~~l~~~l-----~~k~~LLVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTTR~-~~ 317 (588)
....... .......+++.. +.+.+ .+++-++|||+++..+....+.|...+......+.+|++|.+ ..
T Consensus 84 ~~~~~~d~~~i~~~~~~~vd~ir~-ii~~~~~~p~~~~~kVvIIDEa~~L~~~a~naLLk~LEepp~~tv~Il~t~~~~k 162 (585)
T PRK14950 84 AEGSAVDVIEMDAASHTSVDDARE-IIERVQFRPALARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHAIFILATTEVHK 162 (585)
T ss_pred hcCCCCeEEEEeccccCCHHHHHH-HHHHHhhCcccCCeEEEEEeChHhCCHHHHHHHHHHHhcCCCCeEEEEEeCChhh
Confidence 2211110 001122222222 11211 245668999999777666777777776655556666666643 23
Q ss_pred hhhhc-cccceeeCCCCCHHHHHHHHHHhhcCCCCCCCChhHHHHHHHHHHHhCCCchHHHHhh
Q 007817 318 VASMM-GSVEHYNLKLLSDEYCWSVFVKHAFERRDAGAHQFSKLFRKKIVAKCGGLPLAVSTLG 380 (588)
Q Consensus 318 v~~~~-~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~i~~~I~~~c~GlPLai~~~~ 380 (588)
+...+ .....+.+.+++.++....+...+...+.. . ..+....|++.++|.+..+...-
T Consensus 163 ll~tI~SR~~~i~f~~l~~~el~~~L~~~a~~egl~-i---~~eal~~La~~s~Gdlr~al~~L 222 (585)
T PRK14950 163 VPATILSRCQRFDFHRHSVADMAAHLRKIAAAEGIN-L---EPGALEAIARAATGSMRDAENLL 222 (585)
T ss_pred hhHHHHhccceeeCCCCCHHHHHHHHHHHHHHcCCC-C---CHHHHHHHHHHcCCCHHHHHHHH
Confidence 32221 233578899999999998888776432221 1 12345679999999887554443
No 67
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.29 E-value=1.6e-05 Score=86.17 Aligned_cols=197 Identities=14% Similarity=0.178 Sum_probs=114.8
Q ss_pred CceeechhhHHHHHHHHhcCCCCCCCCeEEEEEEccCCCcHHHHHHHHHcccccccccccEEEEEEeCCcccHHHHHHHH
Q 007817 169 RAVYGRDEDKARMLEMVLSDDPTTDANFCVIPIVGMAGAGKTMLAREVYNDRAVQNFKFDVKAWVSVSDDFDVLRISRAL 248 (588)
Q Consensus 169 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i 248 (588)
.+++|-+..++.|.+++.... -...+.++|+.|+||||+|+.+.+...... ..+. ..++.-...+.|
T Consensus 16 ~dIiGQe~v~~~L~~ai~~~r-----i~ha~Lf~GPpG~GKTtiArilAk~L~C~~-~~~~-------~pCg~C~sC~~i 82 (624)
T PRK14959 16 AEVAGQETVKAILSRAAQENR-----VAPAYLFSGTRGVGKTTIARIFAKALNCET-APTG-------EPCNTCEQCRKV 82 (624)
T ss_pred HHhcCCHHHHHHHHHHHHcCC-----CCceEEEECCCCCCHHHHHHHHHHhccccC-CCCC-------CCCcccHHHHHH
Confidence 467898888888888886542 246788999999999999999988653211 0000 011111111111
Q ss_pred HHHhcCC-----CCCCCCHHHHHHHHHHH-----hcCCceeEEeccccccChhHHHHhhcccCCCCCCcEEEEeecc-hh
Q 007817 249 LESITST-----NCDFKTLNEVQVKLRII-----VDGKKFLLVLDDVWNENYNLWEILKAPFMAGARNSKIIVTTCH-SN 317 (588)
Q Consensus 249 l~~l~~~-----~~~~~~~~~l~~~l~~~-----l~~k~~LLVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTTR~-~~ 317 (588)
....... ......++++.. +.+. ..+++-++|||+++..+....+.|...+........+|++|.+ ..
T Consensus 83 ~~g~hpDv~eId~a~~~~Id~iR~-L~~~~~~~p~~g~~kVIIIDEad~Lt~~a~naLLk~LEEP~~~~ifILaTt~~~k 161 (624)
T PRK14959 83 TQGMHVDVVEIDGASNRGIDDAKR-LKEAIGYAPMEGRYKVFIIDEAHMLTREAFNALLKTLEEPPARVTFVLATTEPHK 161 (624)
T ss_pred hcCCCCceEEEecccccCHHHHHH-HHHHHHhhhhcCCceEEEEEChHhCCHHHHHHHHHHhhccCCCEEEEEecCChhh
Confidence 1110000 000111222221 2221 2356679999999887777778887777654445556665544 34
Q ss_pred hhhhc-cccceeeCCCCCHHHHHHHHHHhhcCCCCCCCChhHHHHHHHHHHHhCCCc-hHHHHhhhhc
Q 007817 318 VASMM-GSVEHYNLKLLSDEYCWSVFVKHAFERRDAGAHQFSKLFRKKIVAKCGGLP-LAVSTLGGLL 383 (588)
Q Consensus 318 v~~~~-~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~i~~~I~~~c~GlP-Lai~~~~~~L 383 (588)
+...+ .....+++.+++.++....+...+...+.. ...+....|++.++|.+ .|+..+...+
T Consensus 162 ll~TI~SRcq~i~F~pLs~~eL~~~L~~il~~egi~----id~eal~lIA~~s~GdlR~Al~lLeqll 225 (624)
T PRK14959 162 FPVTIVSRCQHFTFTRLSEAGLEAHLTKVLGREGVD----YDPAAVRLIARRAAGSVRDSMSLLGQVL 225 (624)
T ss_pred hhHHHHhhhhccccCCCCHHHHHHHHHHHHHHcCCC----CCHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 43222 234578999999999999888766432211 12234567889999965 6777766544
No 68
>PRK08084 DNA replication initiation factor; Provisional
Probab=98.29 E-value=1.6e-05 Score=77.16 Aligned_cols=155 Identities=16% Similarity=0.123 Sum_probs=90.9
Q ss_pred EEEEEEccCCCcHHHHHHHHHcccccccccccEEEEEEeCCcccHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhcCC
Q 007817 197 CVIPIVGMAGAGKTMLAREVYNDRAVQNFKFDVKAWVSVSDDFDVLRISRALLESITSTNCDFKTLNEVQVKLRIIVDGK 276 (588)
Q Consensus 197 ~vv~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~il~~l~~~~~~~~~~~~l~~~l~~~l~~k 276 (588)
..+.|+|++|+|||+|++.+++..... -..+.++++..... ...+....+ ..
T Consensus 46 ~~l~l~Gp~G~GKThLl~a~~~~~~~~---~~~v~y~~~~~~~~--------------------~~~~~~~~~----~~- 97 (235)
T PRK08084 46 GYIYLWSREGAGRSHLLHAACAELSQR---GRAVGYVPLDKRAW--------------------FVPEVLEGM----EQ- 97 (235)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHhC---CCeEEEEEHHHHhh--------------------hhHHHHHHh----hh-
Confidence 578999999999999999999865432 22445665542100 001111111 11
Q ss_pred ceeEEeccccccC-hhHHHH-hhcccCCC-CCC-cEEEEeecchhh---------hhhccccceeeCCCCCHHHHHHHHH
Q 007817 277 KFLLVLDDVWNEN-YNLWEI-LKAPFMAG-ARN-SKIIVTTCHSNV---------ASMMGSVEHYNLKLLSDEYCWSVFV 343 (588)
Q Consensus 277 ~~LLVlDdv~~~~-~~~~~~-l~~~l~~~-~~g-s~ilvTTR~~~v---------~~~~~~~~~~~l~~L~~~ea~~Lf~ 343 (588)
--+|+|||+.... ...|+. +...+... ..| .++|+||+.... ...+....+++++++++++-.+++.
T Consensus 98 ~dlliiDdi~~~~~~~~~~~~lf~l~n~~~e~g~~~li~ts~~~p~~l~~~~~~L~SRl~~g~~~~l~~~~~~~~~~~l~ 177 (235)
T PRK08084 98 LSLVCIDNIECIAGDELWEMAIFDLYNRILESGRTRLLITGDRPPRQLNLGLPDLASRLDWGQIYKLQPLSDEEKLQALQ 177 (235)
T ss_pred CCEEEEeChhhhcCCHHHHHHHHHHHHHHHHcCCCeEEEeCCCChHHcCcccHHHHHHHhCCceeeecCCCHHHHHHHHH
Confidence 2489999996532 124443 22222211 123 478999975522 2223355789999999999999998
Q ss_pred HhhcCCCCCCCChhHHHHHHHHHHHhCCCchHHHHhhhhc
Q 007817 344 KHAFERRDAGAHQFSKLFRKKIVAKCGGLPLAVSTLGGLL 383 (588)
Q Consensus 344 ~~a~~~~~~~~~~~~~~i~~~I~~~c~GlPLai~~~~~~L 383 (588)
+++...+- . -.+++..-|++.+.|..-.+..+-..+
T Consensus 178 ~~a~~~~~-~---l~~~v~~~L~~~~~~d~r~l~~~l~~l 213 (235)
T PRK08084 178 LRARLRGF-E---LPEDVGRFLLKRLDREMRTLFMTLDQL 213 (235)
T ss_pred HHHHHcCC-C---CCHHHHHHHHHhhcCCHHHHHHHHHHH
Confidence 86643221 1 223445668888888776665554443
No 69
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=98.29 E-value=1.3e-05 Score=83.24 Aligned_cols=180 Identities=16% Similarity=0.129 Sum_probs=100.0
Q ss_pred CCceeechhhHHHHHHHHhcCCCC-------CCCCeEEEEEEccCCCcHHHHHHHHHcccccccccccEEEEEEeCCccc
Q 007817 168 ERAVYGRDEDKARMLEMVLSDDPT-------TDANFCVIPIVGMAGAGKTMLAREVYNDRAVQNFKFDVKAWVSVSDDFD 240 (588)
Q Consensus 168 ~~~~vGR~~e~~~l~~~L~~~~~~-------~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~wv~v~~~~~ 240 (588)
..++.|++..+++|.+.+..+-.. +-..++-+.|+|++|+|||+||+.+++.... .| +.+..
T Consensus 121 ~~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~l~~---~~-----~~v~~--- 189 (364)
T TIGR01242 121 YEDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNA---TF-----IRVVG--- 189 (364)
T ss_pred HHHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhCCC---CE-----Eecch---
Confidence 356899999999999887532110 1123456899999999999999999986532 22 22211
Q ss_pred HHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhcCCceeEEecccccc-----------Chh---HHHHhhcccCC--CC
Q 007817 241 VLRISRALLESITSTNCDFKTLNEVQVKLRIIVDGKKFLLVLDDVWNE-----------NYN---LWEILKAPFMA--GA 304 (588)
Q Consensus 241 ~~~~~~~il~~l~~~~~~~~~~~~l~~~l~~~l~~k~~LLVlDdv~~~-----------~~~---~~~~l~~~l~~--~~ 304 (588)
..+..... + .....+...+...-...+.+|+||+++.. +.. .+..+...+.. ..
T Consensus 190 -~~l~~~~~----g-----~~~~~i~~~f~~a~~~~p~il~iDEiD~l~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~~~ 259 (364)
T TIGR01242 190 -SELVRKYI----G-----EGARLVREIFELAKEKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAELDGFDPR 259 (364)
T ss_pred -HHHHHHhh----h-----HHHHHHHHHHHHHHhcCCcEEEhhhhhhhccccccCCCCccHHHHHHHHHHHHHhhCCCCC
Confidence 11111100 0 00111111122222346789999998542 111 12222222221 12
Q ss_pred CCcEEEEeecchhhhh-hc----cccceeeCCCCCHHHHHHHHHHhhcCCCCCCCChhHHHHHHHHHHHhCCCc
Q 007817 305 RNSKIIVTTCHSNVAS-MM----GSVEHYNLKLLSDEYCWSVFVKHAFERRDAGAHQFSKLFRKKIVAKCGGLP 373 (588)
Q Consensus 305 ~gs~ilvTTR~~~v~~-~~----~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~i~~~I~~~c~GlP 373 (588)
.+..||.||....... .+ .-...+++...+.++..++|..++...... .... ...+++.+.|..
T Consensus 260 ~~v~vI~ttn~~~~ld~al~r~grfd~~i~v~~P~~~~r~~Il~~~~~~~~l~-~~~~----~~~la~~t~g~s 328 (364)
T TIGR01242 260 GNVKVIAATNRPDILDPALLRPGRFDRIIEVPLPDFEGRLEILKIHTRKMKLA-EDVD----LEAIAKMTEGAS 328 (364)
T ss_pred CCEEEEEecCChhhCChhhcCcccCceEEEeCCcCHHHHHHHHHHHHhcCCCC-ccCC----HHHHHHHcCCCC
Confidence 4677888887543221 11 124578999999999999999887443221 1112 245777777754
No 70
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.29 E-value=2.4e-05 Score=81.57 Aligned_cols=182 Identities=14% Similarity=0.138 Sum_probs=105.7
Q ss_pred CceeechhhHHHHHHHHhcCCCCCCCCeEEEEEEccCCCcHHHHHHHHHccccccc-----ccccEEE-EEEeCCcccHH
Q 007817 169 RAVYGRDEDKARMLEMVLSDDPTTDANFCVIPIVGMAGAGKTMLAREVYNDRAVQN-----FKFDVKA-WVSVSDDFDVL 242 (588)
Q Consensus 169 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~-----~~f~~~~-wv~v~~~~~~~ 242 (588)
.+++|.+...+.+.+.+.... -.+.+.++|++|+||||+|+.+.+...... ..|...+ -++.....+.
T Consensus 17 ~~iig~~~~~~~l~~~i~~~~-----~~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~- 90 (367)
T PRK14970 17 DDVVGQSHITNTLLNAIENNH-----LAQALLFCGPRGVGKTTCARILARKINQPGYDDPNEDFSFNIFELDAASNNSV- 90 (367)
T ss_pred HhcCCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCcceEEeccccCCCH-
Confidence 457899999999999986542 346888999999999999999977543211 0111111 1111111011
Q ss_pred HHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhcCCceeEEeccccccChhHHHHhhcccCCCCCCcEEEEeec-chhhhhh
Q 007817 243 RISRALLESITSTNCDFKTLNEVQVKLRIIVDGKKFLLVLDDVWNENYNLWEILKAPFMAGARNSKIIVTTC-HSNVASM 321 (588)
Q Consensus 243 ~~~~~il~~l~~~~~~~~~~~~l~~~l~~~l~~k~~LLVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTTR-~~~v~~~ 321 (588)
+....+++.+... -..+++-++++|++.......++.+...+......+.+|++|. .......
T Consensus 91 ~~i~~l~~~~~~~----------------p~~~~~kiviIDE~~~l~~~~~~~ll~~le~~~~~~~~Il~~~~~~kl~~~ 154 (367)
T PRK14970 91 DDIRNLIDQVRIP----------------PQTGKYKIYIIDEVHMLSSAAFNAFLKTLEEPPAHAIFILATTEKHKIIPT 154 (367)
T ss_pred HHHHHHHHHHhhc----------------cccCCcEEEEEeChhhcCHHHHHHHHHHHhCCCCceEEEEEeCCcccCCHH
Confidence 1111112211100 0124556899999976655567777665544344455555553 3233222
Q ss_pred -ccccceeeCCCCCHHHHHHHHHHhhcCCCCCCCChhHHHHHHHHHHHhCCCchHH
Q 007817 322 -MGSVEHYNLKLLSDEYCWSVFVKHAFERRDAGAHQFSKLFRKKIVAKCGGLPLAV 376 (588)
Q Consensus 322 -~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~i~~~I~~~c~GlPLai 376 (588)
......+++.++++++....+...+...+.. . ..+....|++.++|.+-.+
T Consensus 155 l~sr~~~v~~~~~~~~~l~~~l~~~~~~~g~~-i---~~~al~~l~~~~~gdlr~~ 206 (367)
T PRK14970 155 ILSRCQIFDFKRITIKDIKEHLAGIAVKEGIK-F---EDDALHIIAQKADGALRDA 206 (367)
T ss_pred HHhcceeEecCCccHHHHHHHHHHHHHHcCCC-C---CHHHHHHHHHhCCCCHHHH
Confidence 2234578999999999999888776432221 1 1234567888899866543
No 71
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.28 E-value=2.8e-05 Score=84.59 Aligned_cols=196 Identities=14% Similarity=0.127 Sum_probs=113.9
Q ss_pred CceeechhhHHHHHHHHhcCCCCCCCCeEEEEEEccCCCcHHHHHHHHHcccccccccccEEEEEEeCCcccHHHHHHHH
Q 007817 169 RAVYGRDEDKARMLEMVLSDDPTTDANFCVIPIVGMAGAGKTMLAREVYNDRAVQNFKFDVKAWVSVSDDFDVLRISRAL 248 (588)
Q Consensus 169 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i 248 (588)
.+++|.+.-++.|..++.... -...+.++|+.|+||||+|+.+++...-.. ..+. .+++.-...+.+
T Consensus 13 ~eivGq~~i~~~L~~~i~~~r-----~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~-~~~~-------~pCg~C~~C~~i 79 (584)
T PRK14952 13 AEVVGQEHVTEPLSSALDAGR-----INHAYLFSGPRGCGKTSSARILARSLNCAQ-GPTA-------TPCGVCESCVAL 79 (584)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHHhcccc-CCCC-------CcccccHHHHHh
Confidence 468999999999999987542 345678999999999999999987543211 0000 000000111111
Q ss_pred HHH---------hcCCC-CCCCCHHHHHHHHHHH-hcCCceeEEeccccccChhHHHHhhcccCCCCCCcEEEEee-cch
Q 007817 249 LES---------ITSTN-CDFKTLNEVQVKLRII-VDGKKFLLVLDDVWNENYNLWEILKAPFMAGARNSKIIVTT-CHS 316 (588)
Q Consensus 249 l~~---------l~~~~-~~~~~~~~l~~~l~~~-l~~k~~LLVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTT-R~~ 316 (588)
... +.... .+.++..++...+... ..+++-++|+|+++..+....+.|+..+......+.+|++| ...
T Consensus 80 ~~~~~~~~dvieidaas~~gvd~iRel~~~~~~~P~~~~~KVvIIDEah~Lt~~A~NALLK~LEEpp~~~~fIL~tte~~ 159 (584)
T PRK14952 80 APNGPGSIDVVELDAASHGGVDDTRELRDRAFYAPAQSRYRIFIVDEAHMVTTAGFNALLKIVEEPPEHLIFIFATTEPE 159 (584)
T ss_pred hcccCCCceEEEeccccccCHHHHHHHHHHHHhhhhcCCceEEEEECCCcCCHHHHHHHHHHHhcCCCCeEEEEEeCChH
Confidence 100 00000 0111122222222211 13455689999998888788888888877655566666555 434
Q ss_pred hhhhh-ccccceeeCCCCCHHHHHHHHHHhhcCCCCCCCChhHHHHHHHHHHHhCCCch-HHHHhhh
Q 007817 317 NVASM-MGSVEHYNLKLLSDEYCWSVFVKHAFERRDAGAHQFSKLFRKKIVAKCGGLPL-AVSTLGG 381 (588)
Q Consensus 317 ~v~~~-~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~i~~~I~~~c~GlPL-ai~~~~~ 381 (588)
.+... ......+++.+++.++..+.+.+.+...+.. .+ ......|++.++|.+- ++..+-.
T Consensus 160 kll~TI~SRc~~~~F~~l~~~~i~~~L~~i~~~egi~-i~---~~al~~Ia~~s~GdlR~aln~Ldq 222 (584)
T PRK14952 160 KVLPTIRSRTHHYPFRLLPPRTMRALIARICEQEGVV-VD---DAVYPLVIRAGGGSPRDTLSVLDQ 222 (584)
T ss_pred hhHHHHHHhceEEEeeCCCHHHHHHHHHHHHHHcCCC-CC---HHHHHHHHHHcCCCHHHHHHHHHH
Confidence 43333 2235689999999999998888766432221 11 2334568889999774 4444433
No 72
>PF14516 AAA_35: AAA-like domain
Probab=98.25 E-value=0.00033 Score=71.67 Aligned_cols=202 Identities=12% Similarity=0.110 Sum_probs=119.1
Q ss_pred CCCceeechhhHHHHHHHHhcCCCCCCCCeEEEEEEccCCCcHHHHHHHHHcccccccccccEEEEEEeCCc-----ccH
Q 007817 167 TERAVYGRDEDKARMLEMVLSDDPTTDANFCVIPIVGMAGAGKTMLAREVYNDRAVQNFKFDVKAWVSVSDD-----FDV 241 (588)
Q Consensus 167 ~~~~~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~wv~v~~~-----~~~ 241 (588)
+.+..|.|...-+++.+.+..+. ..+.|.|+-.+|||+|...+.+..+..+ + ..+++++..- .+.
T Consensus 9 ~~~~Yi~R~~~e~~~~~~i~~~G-------~~~~I~apRq~GKTSll~~l~~~l~~~~--~-~~v~id~~~~~~~~~~~~ 78 (331)
T PF14516_consen 9 DSPFYIERPPAEQECYQEIVQPG-------SYIRIKAPRQMGKTSLLLRLLERLQQQG--Y-RCVYIDLQQLGSAIFSDL 78 (331)
T ss_pred CCCcccCchHHHHHHHHHHhcCC-------CEEEEECcccCCHHHHHHHHHHHHHHCC--C-EEEEEEeecCCCcccCCH
Confidence 34456789866667777775432 4899999999999999999988776543 3 3457776542 245
Q ss_pred HHHHHHHHHHhc----CCCC-------CCCCHHHHHHHHHHHh---cCCceeEEeccccccCh------hHHHHhhcccC
Q 007817 242 LRISRALLESIT----STNC-------DFKTLNEVQVKLRIIV---DGKKFLLVLDDVWNENY------NLWEILKAPFM 301 (588)
Q Consensus 242 ~~~~~~il~~l~----~~~~-------~~~~~~~l~~~l~~~l---~~k~~LLVlDdv~~~~~------~~~~~l~~~l~ 301 (588)
..+++.++..+. .... ...........+.+++ .+++.+|+||++..... +-+..++....
T Consensus 79 ~~f~~~~~~~i~~~L~l~~~l~~~w~~~~~~~~~~~~~~~~~ll~~~~~~lVL~iDEiD~l~~~~~~~~dF~~~LR~~~~ 158 (331)
T PF14516_consen 79 EQFLRWFCEEISRQLKLDEKLDEYWDEEIGSKISCTEYFEEYLLKQIDKPLVLFIDEIDRLFEYPQIADDFFGLLRSWYE 158 (331)
T ss_pred HHHHHHHHHHHHHHcCCChhHHHHHHHhcCChhhHHHHHHHHHHhcCCCCEEEEEechhhhccCcchHHHHHHHHHHHHH
Confidence 555555554443 3221 1112223333444432 26899999999954211 12222222111
Q ss_pred CCC----CCcEEEEeecchh--hhhh-----ccccceeeCCCCCHHHHHHHHHHhhcCCCCCCCChhHHHHHHHHHHHhC
Q 007817 302 AGA----RNSKIIVTTCHSN--VASM-----MGSVEHYNLKLLSDEYCWSVFVKHAFERRDAGAHQFSKLFRKKIVAKCG 370 (588)
Q Consensus 302 ~~~----~gs~ilvTTR~~~--v~~~-----~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~i~~~I~~~c~ 370 (588)
... ...-.++...+.+ .... +.....++|++++.+|...|...+-.. ...+ ..++|...+|
T Consensus 159 ~~~~~~~~~~L~li~~~~t~~~~~~~~~~SPFNIg~~i~L~~Ft~~ev~~L~~~~~~~----~~~~----~~~~l~~~tg 230 (331)
T PF14516_consen 159 QRKNNPIWQKLRLILAGSTEDYIILDINQSPFNIGQPIELPDFTPEEVQELAQRYGLE----FSQE----QLEQLMDWTG 230 (331)
T ss_pred hcccCcccceEEEEEecCcccccccCCCCCCcccccceeCCCCCHHHHHHHHHhhhcc----CCHH----HHHHHHHHHC
Confidence 111 1111122222111 1111 122357999999999999999876421 1111 1678999999
Q ss_pred CCchHHHHhhhhccCC
Q 007817 371 GLPLAVSTLGGLLRTR 386 (588)
Q Consensus 371 GlPLai~~~~~~L~~~ 386 (588)
|+|.-+..++..+..+
T Consensus 231 GhP~Lv~~~~~~l~~~ 246 (331)
T PF14516_consen 231 GHPYLVQKACYLLVEE 246 (331)
T ss_pred CCHHHHHHHHHHHHHc
Confidence 9999999999999764
No 73
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.23 E-value=5.2e-05 Score=81.16 Aligned_cols=185 Identities=12% Similarity=0.092 Sum_probs=108.6
Q ss_pred CceeechhhHHHHHHHHhcCCCCCCCCeEEEEEEccCCCcHHHHHHHHHcccccccc-c-----------------ccEE
Q 007817 169 RAVYGRDEDKARMLEMVLSDDPTTDANFCVIPIVGMAGAGKTMLAREVYNDRAVQNF-K-----------------FDVK 230 (588)
Q Consensus 169 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~-~-----------------f~~~ 230 (588)
..++|-+.-...|.+++.... -...+.++|+.|+||||+|+.++........ . +...
T Consensus 16 ~diiGq~~i~~~L~~~i~~~~-----i~hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~~~pc~~c~nc~~i~~g~~~d~ 90 (486)
T PRK14953 16 KEVIGQEIVVRILKNAVKLQR-----VSHAYIFAGPRGTGKTTIARILAKVLNCLNPQEGEPCGKCENCVEIDKGSFPDL 90 (486)
T ss_pred HHccChHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHHhcCcCCCCCCCCCccHHHHHHhcCCCCcE
Confidence 467899999999999986543 2356778999999999999998875431100 0 0111
Q ss_pred EEEEeCCcccHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHH-hcCCceeEEeccccccChhHHHHhhcccCCCCCCcEE
Q 007817 231 AWVSVSDDFDVLRISRALLESITSTNCDFKTLNEVQVKLRII-VDGKKFLLVLDDVWNENYNLWEILKAPFMAGARNSKI 309 (588)
Q Consensus 231 ~wv~v~~~~~~~~~~~~il~~l~~~~~~~~~~~~l~~~l~~~-l~~k~~LLVlDdv~~~~~~~~~~l~~~l~~~~~gs~i 309 (588)
+++..+... ..++...+...+... ..+++-++|+|+++..+....+.+...+........+
T Consensus 91 ~eidaas~~------------------gvd~ir~I~~~~~~~P~~~~~KVvIIDEad~Lt~~a~naLLk~LEepp~~~v~ 152 (486)
T PRK14953 91 IEIDAASNR------------------GIDDIRALRDAVSYTPIKGKYKVYIIDEAHMLTKEAFNALLKTLEEPPPRTIF 152 (486)
T ss_pred EEEeCccCC------------------CHHHHHHHHHHHHhCcccCCeeEEEEEChhhcCHHHHHHHHHHHhcCCCCeEE
Confidence 111111100 001111222222111 1356679999999877666677777776655445555
Q ss_pred EEee-cchhhhhh-ccccceeeCCCCCHHHHHHHHHHhhcCCCCCCCChhHHHHHHHHHHHhCCCchHHHHhh
Q 007817 310 IVTT-CHSNVASM-MGSVEHYNLKLLSDEYCWSVFVKHAFERRDAGAHQFSKLFRKKIVAKCGGLPLAVSTLG 380 (588)
Q Consensus 310 lvTT-R~~~v~~~-~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~i~~~I~~~c~GlPLai~~~~ 380 (588)
|++| +...+... ......+.+.+++.++....+...+-..+... .......|++.++|.+..+....
T Consensus 153 Il~tt~~~kl~~tI~SRc~~i~f~~ls~~el~~~L~~i~k~egi~i----d~~al~~La~~s~G~lr~al~~L 221 (486)
T PRK14953 153 ILCTTEYDKIPPTILSRCQRFIFSKPTKEQIKEYLKRICNEEKIEY----EEKALDLLAQASEGGMRDAASLL 221 (486)
T ss_pred EEEECCHHHHHHHHHHhceEEEcCCCCHHHHHHHHHHHHHHcCCCC----CHHHHHHHHHHcCCCHHHHHHHH
Confidence 5555 33333322 22345789999999999988887664322211 12334568889999776544433
No 74
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=98.23 E-value=2.4e-05 Score=83.13 Aligned_cols=171 Identities=14% Similarity=0.080 Sum_probs=102.1
Q ss_pred eEEEEEEccCCCcHHHHHHHHHcccccccccccEEEEEEeCCcccHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhcC
Q 007817 196 FCVIPIVGMAGAGKTMLAREVYNDRAVQNFKFDVKAWVSVSDDFDVLRISRALLESITSTNCDFKTLNEVQVKLRIIVDG 275 (588)
Q Consensus 196 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~il~~l~~~~~~~~~~~~l~~~l~~~l~~ 275 (588)
..-+.|+|..|+|||+|++.+.+...... .-..+++++. .++...+...+.... +. ...+.+.++
T Consensus 141 ~npl~i~G~~G~GKTHLl~Ai~~~l~~~~-~~~~v~yv~~------~~f~~~~~~~l~~~~------~~-~~~~~~~~~- 205 (450)
T PRK14087 141 YNPLFIYGESGMGKTHLLKAAKNYIESNF-SDLKVSYMSG------DEFARKAVDILQKTH------KE-IEQFKNEIC- 205 (450)
T ss_pred cCceEEECCCCCcHHHHHHHHHHHHHHhC-CCCeEEEEEH------HHHHHHHHHHHHHhh------hH-HHHHHHHhc-
Confidence 34688999999999999999998554321 1123344443 456666666654210 11 122333333
Q ss_pred CceeEEeccccccC--hhHHHHhhcccCC-CCCCcEEEEeecchh-h--------hhhccccceeeCCCCCHHHHHHHHH
Q 007817 276 KKFLLVLDDVWNEN--YNLWEILKAPFMA-GARNSKIIVTTCHSN-V--------ASMMGSVEHYNLKLLSDEYCWSVFV 343 (588)
Q Consensus 276 k~~LLVlDdv~~~~--~~~~~~l~~~l~~-~~~gs~ilvTTR~~~-v--------~~~~~~~~~~~l~~L~~~ea~~Lf~ 343 (588)
..-+|||||+.... ....+.+...+.. ...|..||+|+.... . ...+...-++.+++++.++-.+++.
T Consensus 206 ~~dvLiIDDiq~l~~k~~~~e~lf~l~N~~~~~~k~iIltsd~~P~~l~~l~~rL~SR~~~Gl~~~L~~pd~e~r~~iL~ 285 (450)
T PRK14087 206 QNDVLIIDDVQFLSYKEKTNEIFFTIFNNFIENDKQLFFSSDKSPELLNGFDNRLITRFNMGLSIAIQKLDNKTATAIIK 285 (450)
T ss_pred cCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCcEEEECCCCHHHHhhccHHHHHHHhCCceeccCCcCHHHHHHHHH
Confidence 34589999996543 1222333333322 123456888875431 1 1222345678899999999999999
Q ss_pred HhhcCCCCCCCChhHHHHHHHHHHHhCCCchHHHHhhhhc
Q 007817 344 KHAFERRDAGAHQFSKLFRKKIVAKCGGLPLAVSTLGGLL 383 (588)
Q Consensus 344 ~~a~~~~~~~~~~~~~~i~~~I~~~c~GlPLai~~~~~~L 383 (588)
+++-..+. ......++..-|++.++|.|-.+.-+...+
T Consensus 286 ~~~~~~gl--~~~l~~evl~~Ia~~~~gd~R~L~gaL~~l 323 (450)
T PRK14087 286 KEIKNQNI--KQEVTEEAINFISNYYSDDVRKIKGSVSRL 323 (450)
T ss_pred HHHHhcCC--CCCCCHHHHHHHHHccCCCHHHHHHHHHHH
Confidence 88743221 012334566789999999998877665433
No 75
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=98.20 E-value=5.9e-05 Score=80.88 Aligned_cols=180 Identities=12% Similarity=0.124 Sum_probs=112.6
Q ss_pred CceeechhhHHHHHHHHhcCCCCCCCCeEEEEEEccCCCcHHHHHHHHHccccccc-------------------ccccE
Q 007817 169 RAVYGRDEDKARMLEMVLSDDPTTDANFCVIPIVGMAGAGKTMLAREVYNDRAVQN-------------------FKFDV 229 (588)
Q Consensus 169 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~-------------------~~f~~ 229 (588)
.+++|-+.-.+.|...+.... -..+..++|+.|+||||+|+.+.+..-... .+++
T Consensus 14 deiiGqe~v~~~L~~~I~~gr-----l~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~~pC~~C~~C~~~~~~~h~d- 87 (535)
T PRK08451 14 DELIGQESVSKTLSLALDNNR-----LAHAYLFSGLRGSGKTSSARIFARALVCEQGPSSTPCDTCIQCQSALENRHID- 87 (535)
T ss_pred HHccCcHHHHHHHHHHHHcCC-----CCeeEEEECCCCCcHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHhhcCCCe-
Confidence 468998888899998886542 345778999999999999998877542111 0111
Q ss_pred EEEEEeCCcccHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHH----hcCCceeEEeccccccChhHHHHhhcccCCCCC
Q 007817 230 KAWVSVSDDFDVLRISRALLESITSTNCDFKTLNEVQVKLRII----VDGKKFLLVLDDVWNENYNLWEILKAPFMAGAR 305 (588)
Q Consensus 230 ~~wv~v~~~~~~~~~~~~il~~l~~~~~~~~~~~~l~~~l~~~----l~~k~~LLVlDdv~~~~~~~~~~l~~~l~~~~~ 305 (588)
++.+..... ...+++...+... ..+++-++|+|+++..+....+.|+..+.....
T Consensus 88 v~eldaas~---------------------~gId~IRelie~~~~~P~~~~~KVvIIDEad~Lt~~A~NALLK~LEEpp~ 146 (535)
T PRK08451 88 IIEMDAASN---------------------RGIDDIRELIEQTKYKPSMARFKIFIIDEVHMLTKEAFNALLKTLEEPPS 146 (535)
T ss_pred EEEeccccc---------------------cCHHHHHHHHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHHhhcCC
Confidence 111111111 1123333222211 114556899999988887778888777766556
Q ss_pred CcEEEEeecch-hhhhh-ccccceeeCCCCCHHHHHHHHHHhhcCCCCCCCChhHHHHHHHHHHHhCCCchHHHHh
Q 007817 306 NSKIIVTTCHS-NVASM-MGSVEHYNLKLLSDEYCWSVFVKHAFERRDAGAHQFSKLFRKKIVAKCGGLPLAVSTL 379 (588)
Q Consensus 306 gs~ilvTTR~~-~v~~~-~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~i~~~I~~~c~GlPLai~~~ 379 (588)
.+.+|++|.+. .+... ......+++.+++.++....+.+.+...+... ..+....|++.++|.+.-+..+
T Consensus 147 ~t~FIL~ttd~~kL~~tI~SRc~~~~F~~Ls~~ei~~~L~~Il~~EGi~i----~~~Al~~Ia~~s~GdlR~alnl 218 (535)
T PRK08451 147 YVKFILATTDPLKLPATILSRTQHFRFKQIPQNSIISHLKTILEKEGVSY----EPEALEILARSGNGSLRDTLTL 218 (535)
T ss_pred ceEEEEEECChhhCchHHHhhceeEEcCCCCHHHHHHHHHHHHHHcCCCC----CHHHHHHHHHHcCCcHHHHHHH
Confidence 67777777553 22221 12346899999999999999887664322211 2234567999999988555444
No 76
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.19 E-value=6.5e-05 Score=82.32 Aligned_cols=197 Identities=12% Similarity=0.094 Sum_probs=111.7
Q ss_pred CceeechhhHHHHHHHHhcCCCCCCCCeEEEEEEccCCCcHHHHHHHHHcccccccccccEEEEEE-eCCcccHHHHHHH
Q 007817 169 RAVYGRDEDKARMLEMVLSDDPTTDANFCVIPIVGMAGAGKTMLAREVYNDRAVQNFKFDVKAWVS-VSDDFDVLRISRA 247 (588)
Q Consensus 169 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~wv~-v~~~~~~~~~~~~ 247 (588)
.+++|-+.-+..|.+++..+. -...+.++|+.|+||||+|+.+.+...... ..+...|.. +..++..-...+.
T Consensus 16 ~eivGQe~i~~~L~~~i~~~r-----i~ha~Lf~Gp~GvGKttlA~~lAk~L~c~~-~~~~~~~~~~~~~~Cg~C~sC~~ 89 (620)
T PRK14954 16 ADITAQEHITHTIQNSLRMDR-----VGHGYIFSGLRGVGKTTAARVFAKAVNCQR-MIDDPVYLQEVTEPCGECESCRD 89 (620)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CCeeEEEECCCCCCHHHHHHHHHHHhCCCC-cCCccccccccCCCCccCHHHHH
Confidence 468999999999999886542 335688999999999999999887653321 111001110 0011111111111
Q ss_pred HHHHhcC-----CCCCCCCHHHHHHHHHHH----hcCCceeEEeccccccChhHHHHhhcccCCCCCCcEEEEee-cchh
Q 007817 248 LLESITS-----TNCDFKTLNEVQVKLRII----VDGKKFLLVLDDVWNENYNLWEILKAPFMAGARNSKIIVTT-CHSN 317 (588)
Q Consensus 248 il~~l~~-----~~~~~~~~~~l~~~l~~~----l~~k~~LLVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTT-R~~~ 317 (588)
+...-.. ........+++...+... ..+++-++|+|+++..+....+.|...+......+.+|++| +...
T Consensus 90 ~~~g~~~n~~~~d~~s~~~vd~Ir~l~e~~~~~P~~~~~KVvIIdEad~Lt~~a~naLLK~LEePp~~tv~IL~t~~~~k 169 (620)
T PRK14954 90 FDAGTSLNISEFDAASNNSVDDIRQLRENVRYGPQKGRYRVYIIDEVHMLSTAAFNAFLKTLEEPPPHAIFIFATTELHK 169 (620)
T ss_pred HhccCCCCeEEecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEeChhhcCHHHHHHHHHHHhCCCCCeEEEEEeCChhh
Confidence 1110000 000111233333322222 23455689999998777677788887776655556655554 3333
Q ss_pred hhhh-ccccceeeCCCCCHHHHHHHHHHhhcCCCCCCCChhHHHHHHHHHHHhCCCchH
Q 007817 318 VASM-MGSVEHYNLKLLSDEYCWSVFVKHAFERRDAGAHQFSKLFRKKIVAKCGGLPLA 375 (588)
Q Consensus 318 v~~~-~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~i~~~I~~~c~GlPLa 375 (588)
+... ......+++.+++.++....+.+.+...+.. ...+.+..|++.++|..--
T Consensus 170 Ll~TI~SRc~~vef~~l~~~ei~~~L~~i~~~egi~----I~~eal~~La~~s~Gdlr~ 224 (620)
T PRK14954 170 IPATIASRCQRFNFKRIPLDEIQSQLQMICRAEGIQ----IDADALQLIARKAQGSMRD 224 (620)
T ss_pred hhHHHHhhceEEecCCCCHHHHHHHHHHHHHHcCCC----CCHHHHHHHHHHhCCCHHH
Confidence 3332 2345789999999999988887765322211 1223456799999996553
No 77
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=98.19 E-value=5.4e-05 Score=83.42 Aligned_cols=194 Identities=15% Similarity=0.159 Sum_probs=110.0
Q ss_pred CceeechhhHHHHHHHHhcCCCCCCCCeEEEEEEccCCCcHHHHHHHHHcccccccccccE-EEEEE---eCCcccHHHH
Q 007817 169 RAVYGRDEDKARMLEMVLSDDPTTDANFCVIPIVGMAGAGKTMLAREVYNDRAVQNFKFDV-KAWVS---VSDDFDVLRI 244 (588)
Q Consensus 169 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~-~~wv~---v~~~~~~~~~ 244 (588)
.+++|.+.-++.|..++.... -...+.++|+.|+||||+|+.+++..-.......+ .+-.| ....++..
T Consensus 18 ~dIiGQe~~v~~L~~aI~~~r-----l~HAYLF~GP~GtGKTt~AriLAk~LnC~~~~~~~~pC~~C~~~~~~~~Dvi-- 90 (725)
T PRK07133 18 DDIVGQDHIVQTLKNIIKSNK-----ISHAYLFSGPRGTGKTSVAKIFANALNCSHKTDLLEPCQECIENVNNSLDII-- 90 (725)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCcHHHHHHHHHHHhcccccCCCCCchhHHHHhhcCCCcEE--
Confidence 468899999999999987543 34677899999999999999998754221100000 00000 00000000
Q ss_pred HHHHHHHhcCCC-CCCCCHHHHHHHHHHH-hcCCceeEEeccccccChhHHHHhhcccCCCCCCcEEE-Eeecchhhhhh
Q 007817 245 SRALLESITSTN-CDFKTLNEVQVKLRII-VDGKKFLLVLDDVWNENYNLWEILKAPFMAGARNSKII-VTTCHSNVASM 321 (588)
Q Consensus 245 ~~~il~~l~~~~-~~~~~~~~l~~~l~~~-l~~k~~LLVlDdv~~~~~~~~~~l~~~l~~~~~gs~il-vTTR~~~v~~~ 321 (588)
.+.+.. ....+..++...+... ..+++-++|+|+++......++.|...+......+.+| +|+....+...
T Consensus 91 ------eidaasn~~vd~IReLie~~~~~P~~g~~KV~IIDEa~~LT~~A~NALLKtLEEPP~~tifILaTte~~KLl~T 164 (725)
T PRK07133 91 ------EMDAASNNGVDEIRELIENVKNLPTQSKYKIYIIDEVHMLSKSAFNALLKTLEEPPKHVIFILATTEVHKIPLT 164 (725)
T ss_pred ------EEeccccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhCCHHHHHHHHHHhhcCCCceEEEEEcCChhhhhHH
Confidence 000000 0011122222222211 13566699999998777777888877776554455555 45444444333
Q ss_pred -ccccceeeCCCCCHHHHHHHHHHhhcCCCCCCCChhHHHHHHHHHHHhCCCch-HHHHh
Q 007817 322 -MGSVEHYNLKLLSDEYCWSVFVKHAFERRDAGAHQFSKLFRKKIVAKCGGLPL-AVSTL 379 (588)
Q Consensus 322 -~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~i~~~I~~~c~GlPL-ai~~~ 379 (588)
......+++.+++.++....+...+-..+.. . ....+..|++.++|.+- |+..+
T Consensus 165 I~SRcq~ieF~~L~~eeI~~~L~~il~kegI~-i---d~eAl~~LA~lS~GslR~AlslL 220 (725)
T PRK07133 165 ILSRVQRFNFRRISEDEIVSRLEFILEKENIS-Y---EKNALKLIAKLSSGSLRDALSIA 220 (725)
T ss_pred HHhhceeEEccCCCHHHHHHHHHHHHHHcCCC-C---CHHHHHHHHHHcCCCHHHHHHHH
Confidence 2344689999999999998888765322211 1 12235678999998765 44433
No 78
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=98.18 E-value=5.6e-05 Score=72.48 Aligned_cols=165 Identities=16% Similarity=0.109 Sum_probs=93.4
Q ss_pred CeEEEEEEccCCCcHHHHHHHHHcccccccccccEEEEEEeCCcccHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhc
Q 007817 195 NFCVIPIVGMAGAGKTMLAREVYNDRAVQNFKFDVKAWVSVSDDFDVLRISRALLESITSTNCDFKTLNEVQVKLRIIVD 274 (588)
Q Consensus 195 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~il~~l~~~~~~~~~~~~l~~~l~~~l~ 274 (588)
....+.|+|..|+|||.|.+.+++...... .-..+++++ ..++...+...+.. ...++ ++..++
T Consensus 33 ~~~~l~l~G~~G~GKTHLL~Ai~~~~~~~~-~~~~v~y~~------~~~f~~~~~~~~~~-----~~~~~----~~~~~~ 96 (219)
T PF00308_consen 33 RYNPLFLYGPSGLGKTHLLQAIANEAQKQH-PGKRVVYLS------AEEFIREFADALRD-----GEIEE----FKDRLR 96 (219)
T ss_dssp SSSEEEEEESTTSSHHHHHHHHHHHHHHHC-TTS-EEEEE------HHHHHHHHHHHHHT-----TSHHH----HHHHHC
T ss_pred CCCceEEECCCCCCHHHHHHHHHHHHHhcc-ccccceeec------HHHHHHHHHHHHHc-----ccchh----hhhhhh
Confidence 344578999999999999999999765432 112344554 34555566655543 22222 333333
Q ss_pred CCceeEEeccccccCh-hHHHH-hhcccCC-CCCCcEEEEeecchhh---------hhhccccceeeCCCCCHHHHHHHH
Q 007817 275 GKKFLLVLDDVWNENY-NLWEI-LKAPFMA-GARNSKIIVTTCHSNV---------ASMMGSVEHYNLKLLSDEYCWSVF 342 (588)
Q Consensus 275 ~k~~LLVlDdv~~~~~-~~~~~-l~~~l~~-~~~gs~ilvTTR~~~v---------~~~~~~~~~~~l~~L~~~ea~~Lf 342 (588)
.-=+|+|||++.-.. ..|.. +...+.. ...|.+||+|+..... ...+...-.+++++++.++...++
T Consensus 97 -~~DlL~iDDi~~l~~~~~~q~~lf~l~n~~~~~~k~li~ts~~~P~~l~~~~~~L~SRl~~Gl~~~l~~pd~~~r~~il 175 (219)
T PF00308_consen 97 -SADLLIIDDIQFLAGKQRTQEELFHLFNRLIESGKQLILTSDRPPSELSGLLPDLRSRLSWGLVVELQPPDDEDRRRIL 175 (219)
T ss_dssp -TSSEEEEETGGGGTTHHHHHHHHHHHHHHHHHTTSEEEEEESS-TTTTTTS-HHHHHHHHCSEEEEE----HHHHHHHH
T ss_pred -cCCEEEEecchhhcCchHHHHHHHHHHHHHHhhCCeEEEEeCCCCccccccChhhhhhHhhcchhhcCCCCHHHHHHHH
Confidence 355899999965432 22332 2222221 1246789999955421 122334568999999999999999
Q ss_pred HHhhcCCCCCCCChhHHHHHHHHHHHhCCCchHHHHhh
Q 007817 343 VKHAFERRDAGAHQFSKLFRKKIVAKCGGLPLAVSTLG 380 (588)
Q Consensus 343 ~~~a~~~~~~~~~~~~~~i~~~I~~~c~GlPLai~~~~ 380 (588)
.+.+...+- . ..+++..-|++.+.+..-.+..+-
T Consensus 176 ~~~a~~~~~-~---l~~~v~~~l~~~~~~~~r~L~~~l 209 (219)
T PF00308_consen 176 QKKAKERGI-E---LPEEVIEYLARRFRRDVRELEGAL 209 (219)
T ss_dssp HHHHHHTT------S-HHHHHHHHHHTTSSHHHHHHHH
T ss_pred HHHHHHhCC-C---CcHHHHHHHHHhhcCCHHHHHHHH
Confidence 998854322 1 234455667777776665554443
No 79
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=98.17 E-value=8.2e-06 Score=93.18 Aligned_cols=156 Identities=15% Similarity=0.176 Sum_probs=87.7
Q ss_pred CceeechhhHHHHHHHHhcCCCCCCCCeEEEEEEccCCCcHHHHHHHHHccccccc---ccccEEEE-EEeCCcccHHHH
Q 007817 169 RAVYGRDEDKARMLEMVLSDDPTTDANFCVIPIVGMAGAGKTMLAREVYNDRAVQN---FKFDVKAW-VSVSDDFDVLRI 244 (588)
Q Consensus 169 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~---~~f~~~~w-v~v~~~~~~~~~ 244 (588)
..++||+.++.++++.|.... ...+.++|++|+||||||+.+++...... ...+..+| +.++.
T Consensus 187 d~~iGr~~ei~~~i~~l~r~~------~~n~lLvG~pGvGKTal~~~La~~i~~~~v~~~l~~~~i~~l~l~~------- 253 (852)
T TIGR03345 187 DPVLGRDDEIRQMIDILLRRR------QNNPILTGEAGVGKTAVVEGLALRIAAGDVPPALRNVRLLSLDLGL------- 253 (852)
T ss_pred CcccCCHHHHHHHHHHHhcCC------cCceeEECCCCCCHHHHHHHHHHHHhhCCCCccccCCeEEEeehhh-------
Confidence 468999999999999986543 23556999999999999999988653211 01223332 22221
Q ss_pred HHHHHHHhcCCCCCCCCH-HHHHHHHHHHh-cCCceeEEeccccccC-------hhHHH-HhhcccCCCCCCcEEEEeec
Q 007817 245 SRALLESITSTNCDFKTL-NEVQVKLRIIV-DGKKFLLVLDDVWNEN-------YNLWE-ILKAPFMAGARNSKIIVTTC 314 (588)
Q Consensus 245 ~~~il~~l~~~~~~~~~~-~~l~~~l~~~l-~~k~~LLVlDdv~~~~-------~~~~~-~l~~~l~~~~~gs~ilvTTR 314 (588)
+.......... +.+...+.+.- .+++.+|++|+++.-. ...-. .+...+. . ..-++|-||.
T Consensus 254 -------l~ag~~~~ge~e~~lk~ii~e~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~n~Lkp~l~-~-G~l~~IgaTT 324 (852)
T TIGR03345 254 -------LQAGASVKGEFENRLKSVIDEVKASPQPIILFIDEAHTLIGAGGQAGQGDAANLLKPALA-R-GELRTIAATT 324 (852)
T ss_pred -------hhcccccchHHHHHHHHHHHHHHhcCCCeEEEEeChHHhccCCCccccccHHHHhhHHhh-C-CCeEEEEecC
Confidence 00000001111 11222222221 2568999999986532 11111 2222222 2 2356676666
Q ss_pred chhhhhhc-------cccceeeCCCCCHHHHHHHHHHhh
Q 007817 315 HSNVASMM-------GSVEHYNLKLLSDEYCWSVFVKHA 346 (588)
Q Consensus 315 ~~~v~~~~-------~~~~~~~l~~L~~~ea~~Lf~~~a 346 (588)
.++....+ .....+.+++++.++..+++....
T Consensus 325 ~~e~~~~~~~d~AL~rRf~~i~v~eps~~~~~~iL~~~~ 363 (852)
T TIGR03345 325 WAEYKKYFEKDPALTRRFQVVKVEEPDEETAIRMLRGLA 363 (852)
T ss_pred HHHHhhhhhccHHHHHhCeEEEeCCCCHHHHHHHHHHHH
Confidence 54332221 234689999999999999975443
No 80
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=98.15 E-value=4.4e-05 Score=75.53 Aligned_cols=161 Identities=14% Similarity=0.096 Sum_probs=82.4
Q ss_pred ceeechhhHHHHHHHHhc---------CCCCCCCCeEEEEEEccCCCcHHHHHHHHHcccccccccccEEEEEEeCCccc
Q 007817 170 AVYGRDEDKARMLEMVLS---------DDPTTDANFCVIPIVGMAGAGKTMLAREVYNDRAVQNFKFDVKAWVSVSDDFD 240 (588)
Q Consensus 170 ~~vGR~~e~~~l~~~L~~---------~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~wv~v~~~~~ 240 (588)
.++|.+..+++|.+.... ......+....+.++|++|+||||+|+.+++.....+ .-....++.++..
T Consensus 7 ~~~Gl~~vk~~i~~~~~~~~~~~~~~~~g~~~~~~~~~vll~GppGtGKTtlA~~ia~~l~~~~-~~~~~~~v~~~~~-- 83 (261)
T TIGR02881 7 RMVGLDEVKALIKEIYAWIQINEKRKEEGLKTSKQVLHMIFKGNPGTGKTTVARILGKLFKEMN-VLSKGHLIEVERA-- 83 (261)
T ss_pred HhcChHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCcceEEEEcCCCCCHHHHHHHHHHHHHhcC-cccCCceEEecHH--
Confidence 467877766665533211 1001123456788999999999999999987542211 1111112333221
Q ss_pred HHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhcCCceeEEeccccccC--------hhHHHHhhcccCCCCCCcEEEEe
Q 007817 241 VLRISRALLESITSTNCDFKTLNEVQVKLRIIVDGKKFLLVLDDVWNEN--------YNLWEILKAPFMAGARNSKIIVT 312 (588)
Q Consensus 241 ~~~~~~~il~~l~~~~~~~~~~~~l~~~l~~~l~~k~~LLVlDdv~~~~--------~~~~~~l~~~l~~~~~gs~ilvT 312 (588)
++ .....+ .........+... ..-+|+||+++.-. ....+.+...+........++++
T Consensus 84 --~l----~~~~~g-----~~~~~~~~~~~~a---~~~VL~IDE~~~L~~~~~~~~~~~~i~~Ll~~~e~~~~~~~vila 149 (261)
T TIGR02881 84 --DL----VGEYIG-----HTAQKTREVIKKA---LGGVLFIDEAYSLARGGEKDFGKEAIDTLVKGMEDNRNEFVLILA 149 (261)
T ss_pred --Hh----hhhhcc-----chHHHHHHHHHhc---cCCEEEEechhhhccCCccchHHHHHHHHHHHHhccCCCEEEEec
Confidence 11 111100 1111122222221 23589999996421 12334454444444334455566
Q ss_pred ecchhhhh------hc-cc-cceeeCCCCCHHHHHHHHHHhhc
Q 007817 313 TCHSNVAS------MM-GS-VEHYNLKLLSDEYCWSVFVKHAF 347 (588)
Q Consensus 313 TR~~~v~~------~~-~~-~~~~~l~~L~~~ea~~Lf~~~a~ 347 (588)
+...+... .+ .. ...+.+++++.++-.+++.+.+.
T Consensus 150 ~~~~~~~~~~~~~p~L~sRf~~~i~f~~~~~~el~~Il~~~~~ 192 (261)
T TIGR02881 150 GYSDEMDYFLSLNPGLRSRFPISIDFPDYTVEELMEIAERMVK 192 (261)
T ss_pred CCcchhHHHHhcChHHHhccceEEEECCCCHHHHHHHHHHHHH
Confidence 54332211 11 11 24588999999999999987764
No 81
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=98.15 E-value=6.4e-05 Score=79.94 Aligned_cols=183 Identities=15% Similarity=0.153 Sum_probs=108.6
Q ss_pred CceeechhhHHHHHHHHhcCCCCCCCCeEEEEEEccCCCcHHHHHHHHHccccccc--------------------cccc
Q 007817 169 RAVYGRDEDKARMLEMVLSDDPTTDANFCVIPIVGMAGAGKTMLAREVYNDRAVQN--------------------FKFD 228 (588)
Q Consensus 169 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~--------------------~~f~ 228 (588)
.+++|.+..++.|.+++.... -...+.++|+.|+||||+|+.+.+...... .+++
T Consensus 17 ~diiGq~~~v~~L~~~i~~~~-----i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~c~~c~~C~~i~~~~~~d 91 (451)
T PRK06305 17 SEILGQDAVVAVLKNALRFNR-----AAHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPCNQCASCKEISSGTSLD 91 (451)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CceEEEEEcCCCCCHHHHHHHHHHHhcCCCcccCCCCCcccHHHHHHhcCCCCc
Confidence 468999999999999986542 246788999999999999999877543211 0111
Q ss_pred EEEEEEeCCcccHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHH-hcCCceeEEeccccccChhHHHHhhcccCCCCCCc
Q 007817 229 VKAWVSVSDDFDVLRISRALLESITSTNCDFKTLNEVQVKLRII-VDGKKFLLVLDDVWNENYNLWEILKAPFMAGARNS 307 (588)
Q Consensus 229 ~~~wv~v~~~~~~~~~~~~il~~l~~~~~~~~~~~~l~~~l~~~-l~~k~~LLVlDdv~~~~~~~~~~l~~~l~~~~~gs 307 (588)
.+++........ ++..++...+... ..+++-++|+|++...+....+.|...+......+
T Consensus 92 -~~~i~g~~~~gi------------------d~ir~i~~~l~~~~~~~~~kvvIIdead~lt~~~~n~LLk~lEep~~~~ 152 (451)
T PRK06305 92 -VLEIDGASHRGI------------------EDIRQINETVLFTPSKSRYKIYIIDEVHMLTKEAFNSLLKTLEEPPQHV 152 (451)
T ss_pred -eEEeeccccCCH------------------HHHHHHHHHHHhhhhcCCCEEEEEecHHhhCHHHHHHHHHHhhcCCCCc
Confidence 111110000000 1111111111111 13566789999997666666677777766655566
Q ss_pred EEEEeecc-hhhhhh-ccccceeeCCCCCHHHHHHHHHHhhcCCCCCCCChhHHHHHHHHHHHhCCCch-HHHHh
Q 007817 308 KIIVTTCH-SNVASM-MGSVEHYNLKLLSDEYCWSVFVKHAFERRDAGAHQFSKLFRKKIVAKCGGLPL-AVSTL 379 (588)
Q Consensus 308 ~ilvTTR~-~~v~~~-~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~i~~~I~~~c~GlPL-ai~~~ 379 (588)
.+|++|.. ..+... ......+++.++++++....+...+-..+. . ...+.+..|++.++|.+- |+..+
T Consensus 153 ~~Il~t~~~~kl~~tI~sRc~~v~f~~l~~~el~~~L~~~~~~eg~-~---i~~~al~~L~~~s~gdlr~a~~~L 223 (451)
T PRK06305 153 KFFLATTEIHKIPGTILSRCQKMHLKRIPEETIIDKLALIAKQEGI-E---TSREALLPIARAAQGSLRDAESLY 223 (451)
T ss_pred eEEEEeCChHhcchHHHHhceEEeCCCCCHHHHHHHHHHHHHHcCC-C---CCHHHHHHHHHHcCCCHHHHHHHH
Confidence 66666633 233222 223467999999999999888876532221 1 123345679999999764 44443
No 82
>PRK05642 DNA replication initiation factor; Validated
Probab=98.14 E-value=3.1e-05 Score=75.09 Aligned_cols=156 Identities=17% Similarity=0.108 Sum_probs=92.2
Q ss_pred eEEEEEEccCCCcHHHHHHHHHcccccccccccEEEEEEeCCcccHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhcC
Q 007817 196 FCVIPIVGMAGAGKTMLAREVYNDRAVQNFKFDVKAWVSVSDDFDVLRISRALLESITSTNCDFKTLNEVQVKLRIIVDG 275 (588)
Q Consensus 196 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~il~~l~~~~~~~~~~~~l~~~l~~~l~~ 275 (588)
...+.|+|..|+|||.|++.+++....++ ..++|++..+ +... .. .+.+.+.+
T Consensus 45 ~~~l~l~G~~G~GKTHLl~a~~~~~~~~~---~~v~y~~~~~------~~~~--------------~~----~~~~~~~~ 97 (234)
T PRK05642 45 ESLIYLWGKDGVGRSHLLQAACLRFEQRG---EPAVYLPLAE------LLDR--------------GP----ELLDNLEQ 97 (234)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHhCC---CcEEEeeHHH------HHhh--------------hH----HHHHhhhh
Confidence 35789999999999999999988654322 2456666532 1110 01 12222222
Q ss_pred CceeEEeccccccC-hhHHHH-hhcccCC-CCCCcEEEEeecchhh-h--------hhccccceeeCCCCCHHHHHHHHH
Q 007817 276 KKFLLVLDDVWNEN-YNLWEI-LKAPFMA-GARNSKIIVTTCHSNV-A--------SMMGSVEHYNLKLLSDEYCWSVFV 343 (588)
Q Consensus 276 k~~LLVlDdv~~~~-~~~~~~-l~~~l~~-~~~gs~ilvTTR~~~v-~--------~~~~~~~~~~l~~L~~~ea~~Lf~ 343 (588)
- =+||+||+.... ...|.. +...+.. ...|..+|+|++.... . ..+....++++.+++.++-..++.
T Consensus 98 ~-d~LiiDDi~~~~~~~~~~~~Lf~l~n~~~~~g~~ilits~~~p~~l~~~~~~L~SRl~~gl~~~l~~~~~e~~~~il~ 176 (234)
T PRK05642 98 Y-ELVCLDDLDVIAGKADWEEALFHLFNRLRDSGRRLLLAASKSPRELPIKLPDLKSRLTLALVFQMRGLSDEDKLRALQ 176 (234)
T ss_pred C-CEEEEechhhhcCChHHHHHHHHHHHHHHhcCCEEEEeCCCCHHHcCccCccHHHHHhcCeeeecCCCCHHHHHHHHH
Confidence 2 378899996431 224433 3333322 2246678888875322 1 112234678999999999999999
Q ss_pred HhhcCCCCCCCChhHHHHHHHHHHHhCCCchHHHHhhhhc
Q 007817 344 KHAFERRDAGAHQFSKLFRKKIVAKCGGLPLAVSTLGGLL 383 (588)
Q Consensus 344 ~~a~~~~~~~~~~~~~~i~~~I~~~c~GlPLai~~~~~~L 383 (588)
.++...+- ..+ .++..-|++.+.|..-.+..+-..|
T Consensus 177 ~ka~~~~~-~l~---~ev~~~L~~~~~~d~r~l~~~l~~l 212 (234)
T PRK05642 177 LRASRRGL-HLT---DEVGHFILTRGTRSMSALFDLLERL 212 (234)
T ss_pred HHHHHcCC-CCC---HHHHHHHHHhcCCCHHHHHHHHHHH
Confidence 66643221 122 3456678888888776665554444
No 83
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.14 E-value=7.5e-05 Score=82.24 Aligned_cols=178 Identities=12% Similarity=0.136 Sum_probs=111.5
Q ss_pred CceeechhhHHHHHHHHhcCCCCCCCCeEEEEEEccCCCcHHHHHHHHHccccccc--------------------cccc
Q 007817 169 RAVYGRDEDKARMLEMVLSDDPTTDANFCVIPIVGMAGAGKTMLAREVYNDRAVQN--------------------FKFD 228 (588)
Q Consensus 169 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~--------------------~~f~ 228 (588)
.+++|.+...+.|..++.... -...+.++|+.|+||||+|+.+.+...... .+|+
T Consensus 17 ~~viGq~~~~~~L~~~i~~~~-----l~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~Cg~C~sC~~~~~~~~~n 91 (614)
T PRK14971 17 ESVVGQEALTTTLKNAIATNK-----LAHAYLFCGPRGVGKTTCARIFAKTINCQNLTADGEACNECESCVAFNEQRSYN 91 (614)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CCeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCcchHHHHHhcCCCCc
Confidence 468999999999999987542 346788999999999999988877543110 0222
Q ss_pred EEEEEEeCCcccHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHH----hcCCceeEEeccccccChhHHHHhhcccCCCC
Q 007817 229 VKAWVSVSDDFDVLRISRALLESITSTNCDFKTLNEVQVKLRII----VDGKKFLLVLDDVWNENYNLWEILKAPFMAGA 304 (588)
Q Consensus 229 ~~~wv~v~~~~~~~~~~~~il~~l~~~~~~~~~~~~l~~~l~~~----l~~k~~LLVlDdv~~~~~~~~~~l~~~l~~~~ 304 (588)
.. .++.+.. ...+++...+... ..+++=++|+|++...+...++.+...+....
T Consensus 92 ~~-~ld~~~~---------------------~~vd~Ir~li~~~~~~P~~~~~KVvIIdea~~Ls~~a~naLLK~LEepp 149 (614)
T PRK14971 92 IH-ELDAASN---------------------NSVDDIRNLIEQVRIPPQIGKYKIYIIDEVHMLSQAAFNAFLKTLEEPP 149 (614)
T ss_pred eE-Eeccccc---------------------CCHHHHHHHHHHHhhCcccCCcEEEEEECcccCCHHHHHHHHHHHhCCC
Confidence 11 1111111 1122222222111 12345588999998877778888888877655
Q ss_pred CCcEEEEee-cchhhhhhc-cccceeeCCCCCHHHHHHHHHHhhcCCCCCCCChhHHHHHHHHHHHhCCCchHHH
Q 007817 305 RNSKIIVTT-CHSNVASMM-GSVEHYNLKLLSDEYCWSVFVKHAFERRDAGAHQFSKLFRKKIVAKCGGLPLAVS 377 (588)
Q Consensus 305 ~gs~ilvTT-R~~~v~~~~-~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~i~~~I~~~c~GlPLai~ 377 (588)
.++.+|++| ....+...+ .....+++.+++.++....+.+.+-..+. ... ...+..|++.++|..--+.
T Consensus 150 ~~tifIL~tt~~~kIl~tI~SRc~iv~f~~ls~~ei~~~L~~ia~~egi-~i~---~~al~~La~~s~gdlr~al 220 (614)
T PRK14971 150 SYAIFILATTEKHKILPTILSRCQIFDFNRIQVADIVNHLQYVASKEGI-TAE---PEALNVIAQKADGGMRDAL 220 (614)
T ss_pred CCeEEEEEeCCchhchHHHHhhhheeecCCCCHHHHHHHHHHHHHHcCC-CCC---HHHHHHHHHHcCCCHHHHH
Confidence 566666555 444444332 24568999999999999988876643222 111 2235678999999765443
No 84
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=98.13 E-value=3.1e-05 Score=87.80 Aligned_cols=157 Identities=16% Similarity=0.150 Sum_probs=87.8
Q ss_pred CceeechhhHHHHHHHHhcCCCCCCCCeEEEEEEccCCCcHHHHHHHHHccccccc---ccccEEEEEEeCCcccHHHHH
Q 007817 169 RAVYGRDEDKARMLEMVLSDDPTTDANFCVIPIVGMAGAGKTMLAREVYNDRAVQN---FKFDVKAWVSVSDDFDVLRIS 245 (588)
Q Consensus 169 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~---~~f~~~~wv~v~~~~~~~~~~ 245 (588)
..++||+.+++++++.|.... ..-+.++|++|+|||++|+.+++...... ...+..+|. ++ ..
T Consensus 182 ~~~igr~~ei~~~~~~L~~~~------~~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~~~~~~-~~----~~--- 247 (731)
T TIGR02639 182 DPLIGREDELERTIQVLCRRK------KNNPLLVGEPGVGKTAIAEGLALRIAEGKVPENLKNAKIYS-LD----MG--- 247 (731)
T ss_pred CcccCcHHHHHHHHHHHhcCC------CCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCeEEE-ec----HH---
Confidence 368999999999999986543 23567999999999999999988653221 011333332 11 11
Q ss_pred HHHHHHhcCCCCCCCCHHHHHHHHHHHh-cCCceeEEeccccccC---------hhHHHHhhcccCCCCCCcEEEEeecc
Q 007817 246 RALLESITSTNCDFKTLNEVQVKLRIIV-DGKKFLLVLDDVWNEN---------YNLWEILKAPFMAGARNSKIIVTTCH 315 (588)
Q Consensus 246 ~~il~~l~~~~~~~~~~~~l~~~l~~~l-~~k~~LLVlDdv~~~~---------~~~~~~l~~~l~~~~~gs~ilvTTR~ 315 (588)
.++.. . ....+.++....+.+.+ ..++.+|++|+++.-. .+.-+.+...+..+ .-++|-+|..
T Consensus 248 -~l~a~---~-~~~g~~e~~l~~i~~~~~~~~~~ILfiDEih~l~~~g~~~~~~~~~~~~L~~~l~~g--~i~~IgaTt~ 320 (731)
T TIGR02639 248 -SLLAG---T-KYRGDFEERLKAVVSEIEKEPNAILFIDEIHTIVGAGATSGGSMDASNLLKPALSSG--KLRCIGSTTY 320 (731)
T ss_pred -HHhhh---c-cccchHHHHHHHHHHHHhccCCeEEEEecHHHHhccCCCCCccHHHHHHHHHHHhCC--CeEEEEecCH
Confidence 11100 0 00112222222222222 3468899999996321 11122333333221 2455555554
Q ss_pred hhhhhh-------ccccceeeCCCCCHHHHHHHHHHhh
Q 007817 316 SNVASM-------MGSVEHYNLKLLSDEYCWSVFVKHA 346 (588)
Q Consensus 316 ~~v~~~-------~~~~~~~~l~~L~~~ea~~Lf~~~a 346 (588)
++.... ......+++++++.++..+++....
T Consensus 321 ~e~~~~~~~d~al~rRf~~i~v~~p~~~~~~~il~~~~ 358 (731)
T TIGR02639 321 EEYKNHFEKDRALSRRFQKIDVGEPSIEETVKILKGLK 358 (731)
T ss_pred HHHHHHhhhhHHHHHhCceEEeCCCCHHHHHHHHHHHH
Confidence 332211 1134679999999999999998654
No 85
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=98.13 E-value=1.8e-05 Score=82.17 Aligned_cols=119 Identities=13% Similarity=0.157 Sum_probs=76.7
Q ss_pred CceeechhhHHHHHHHHhcCCCCCCCCeEEEEEEccCCCcHHHHHHHHHcccccccccccEEEEEEeCCcccHHHHHHHH
Q 007817 169 RAVYGRDEDKARMLEMVLSDDPTTDANFCVIPIVGMAGAGKTMLAREVYNDRAVQNFKFDVKAWVSVSDDFDVLRISRAL 248 (588)
Q Consensus 169 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i 248 (588)
.++++.+...+.+...|... +.+.++|++|+|||++|+.+++...... .|+.+.||+++...+..++...+
T Consensus 175 ~d~~i~e~~le~l~~~L~~~--------~~iil~GppGtGKT~lA~~la~~l~~~~-~~~~v~~VtFHpsySYeDFI~G~ 245 (459)
T PRK11331 175 NDLFIPETTIETILKRLTIK--------KNIILQGPPGVGKTFVARRLAYLLTGEK-APQRVNMVQFHQSYSYEDFIQGY 245 (459)
T ss_pred hcccCCHHHHHHHHHHHhcC--------CCEEEECCCCCCHHHHHHHHHHHhcCCc-ccceeeEEeecccccHHHHhccc
Confidence 45788899999999998743 3678899999999999999998776555 68888999999888766654322
Q ss_pred HHHhcCCCCCCCCHH-HHHHHHHHHh--cCCceeEEeccccccChhH-HHHhhccc
Q 007817 249 LESITSTNCDFKTLN-EVQVKLRIIV--DGKKFLLVLDDVWNENYNL-WEILKAPF 300 (588)
Q Consensus 249 l~~l~~~~~~~~~~~-~l~~~l~~~l--~~k~~LLVlDdv~~~~~~~-~~~l~~~l 300 (588)
.....+..-.. -....+.... .+++++||+|++...+... +..+...+
T Consensus 246 ----rP~~vgy~~~~G~f~~~~~~A~~~p~~~~vliIDEINRani~kiFGel~~lL 297 (459)
T PRK11331 246 ----RPNGVGFRRKDGIFYNFCQQAKEQPEKKYVFIIDEINRANLSKVFGEVMMLM 297 (459)
T ss_pred ----CCCCCCeEecCchHHHHHHHHHhcccCCcEEEEehhhccCHHHhhhhhhhhc
Confidence 11110100000 1111222222 2468999999996655332 44443333
No 86
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.12 E-value=9.1e-05 Score=81.61 Aligned_cols=196 Identities=11% Similarity=0.100 Sum_probs=113.0
Q ss_pred CceeechhhHHHHHHHHhcCCCCCCCCeEEEEEEccCCCcHHHHHHHHHcccccccccccEEEEEEeCCcccHHHHHHHH
Q 007817 169 RAVYGRDEDKARMLEMVLSDDPTTDANFCVIPIVGMAGAGKTMLAREVYNDRAVQNFKFDVKAWVSVSDDFDVLRISRAL 248 (588)
Q Consensus 169 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i 248 (588)
..++|.+.-...|..++.... -...+.++|+.|+||||+|+.+++..-... .... ....+..-...+.+
T Consensus 16 ~~liGq~~i~~~L~~~l~~~r-----l~~a~Lf~Gp~G~GKttlA~~lAk~L~c~~-~~~~-----~~~~Cg~C~~C~~i 84 (620)
T PRK14948 16 DELVGQEAIATTLKNALISNR-----IAPAYLFTGPRGTGKTSSARILAKSLNCLN-SDKP-----TPEPCGKCELCRAI 84 (620)
T ss_pred hhccChHHHHHHHHHHHHcCC-----CCceEEEECCCCCChHHHHHHHHHHhcCCC-cCCC-----CCCCCcccHHHHHH
Confidence 457899999999999887542 235678999999999999999988653221 1000 00111111222222
Q ss_pred HHHhcC-----CCCCCCCHHHHHHHHHHH----hcCCceeEEeccccccChhHHHHhhcccCCCCCCcEEEEeecch-hh
Q 007817 249 LESITS-----TNCDFKTLNEVQVKLRII----VDGKKFLLVLDDVWNENYNLWEILKAPFMAGARNSKIIVTTCHS-NV 318 (588)
Q Consensus 249 l~~l~~-----~~~~~~~~~~l~~~l~~~----l~~k~~LLVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTTR~~-~v 318 (588)
...... ........+.+...+... ..+++-++|+|+++..+...++.|+..+......+.+|++|.+. .+
T Consensus 85 ~~g~h~D~~ei~~~~~~~vd~IReii~~a~~~p~~~~~KViIIDEad~Lt~~a~naLLK~LEePp~~tvfIL~t~~~~~l 164 (620)
T PRK14948 85 AAGNALDVIEIDAASNTGVDNIRELIERAQFAPVQARWKVYVIDECHMLSTAAFNALLKTLEEPPPRVVFVLATTDPQRV 164 (620)
T ss_pred hcCCCccEEEEeccccCCHHHHHHHHHHHhhChhcCCceEEEEECccccCHHHHHHHHHHHhcCCcCeEEEEEeCChhhh
Confidence 211111 000112223332222111 12455689999998777777888877776654556555555433 33
Q ss_pred hhhc-cccceeeCCCCCHHHHHHHHHHhhcCCCCCCCChhHHHHHHHHHHHhCCCchHHHHh
Q 007817 319 ASMM-GSVEHYNLKLLSDEYCWSVFVKHAFERRDAGAHQFSKLFRKKIVAKCGGLPLAVSTL 379 (588)
Q Consensus 319 ~~~~-~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~i~~~I~~~c~GlPLai~~~ 379 (588)
...+ .....+++..++.++....+...+...+. ... .+....|++.++|.+..+..+
T Consensus 165 lpTIrSRc~~~~f~~l~~~ei~~~L~~ia~kegi-~is---~~al~~La~~s~G~lr~A~~l 222 (620)
T PRK14948 165 LPTIISRCQRFDFRRIPLEAMVQHLSEIAEKESI-EIE---PEALTLVAQRSQGGLRDAESL 222 (620)
T ss_pred hHHHHhheeEEEecCCCHHHHHHHHHHHHHHhCC-CCC---HHHHHHHHHHcCCCHHHHHHH
Confidence 3222 23467888999999988888776533221 111 233567999999988655443
No 87
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=98.12 E-value=1.1e-05 Score=82.50 Aligned_cols=90 Identities=20% Similarity=0.187 Sum_probs=63.4
Q ss_pred eEEEEEEccCCCcHHHHHHHHHcccccccccccEEEEEEeCCc--ccHHHHHHHHHHHhcCCCCCCCCHH------HHHH
Q 007817 196 FCVIPIVGMAGAGKTMLAREVYNDRAVQNFKFDVKAWVSVSDD--FDVLRISRALLESITSTNCDFKTLN------EVQV 267 (588)
Q Consensus 196 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~wv~v~~~--~~~~~~~~~il~~l~~~~~~~~~~~------~l~~ 267 (588)
-..++|+|++|+|||||++.+++....+ +|+..+||.+.+. .++.++++.++..+-...-+..... ....
T Consensus 168 Gq~~~IvG~~g~GKTtL~~~i~~~I~~n--hfdv~v~VlLIgER~~EVtDLqrsIlg~Vvast~d~p~~~~~~va~~v~e 245 (415)
T TIGR00767 168 GQRGLIVAPPKAGKTVLLQKIAQAITRN--HPEVELIVLLIDERPEEVTDMQRSVKGEVVASTFDEPASRHVQVAEMVIE 245 (415)
T ss_pred CCEEEEECCCCCChhHHHHHHHHhhccc--CCceEEEEEEcCCCCccHHHHHHHhhceEEEecCCCChHHHHHHHHHHHH
Confidence 3688999999999999999999977553 6999999999865 7889999998654433322211111 1111
Q ss_pred HHHHH-hcCCceeEEeccccc
Q 007817 268 KLRII-VDGKKFLLVLDDVWN 287 (588)
Q Consensus 268 ~l~~~-l~~k~~LLVlDdv~~ 287 (588)
..... -.|++.+|++|++..
T Consensus 246 ~Ae~~~~~GkdVVLlIDEitR 266 (415)
T TIGR00767 246 KAKRLVEHKKDVVILLDSITR 266 (415)
T ss_pred HHHHHHHcCCCeEEEEEChhH
Confidence 12222 358999999999954
No 88
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=98.12 E-value=8.1e-05 Score=76.13 Aligned_cols=211 Identities=16% Similarity=0.118 Sum_probs=124.5
Q ss_pred CCCceeechhhHHHHHHHHhcCCCCCCCCeEEEEEEccCCCcHHHHHHHHHcccccccccccEEEEEEeCCcccHHHHHH
Q 007817 167 TERAVYGRDEDKARMLEMVLSDDPTTDANFCVIPIVGMAGAGKTMLAREVYNDRAVQNFKFDVKAWVSVSDDFDVLRISR 246 (588)
Q Consensus 167 ~~~~~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~ 246 (588)
.+..++||+.|+..+.+++...-. ....+.+-|.|-+|.|||.+...++.+..... .-.+++++++..-....+++.
T Consensus 148 ~p~~l~gRe~e~~~v~~F~~~hle--~~t~gSlYVsG~PGtgkt~~l~rvl~~~~~~~-~~~~~v~inc~sl~~~~aiF~ 224 (529)
T KOG2227|consen 148 PPGTLKGRELEMDIVREFFSLHLE--LNTSGSLYVSGQPGTGKTALLSRVLDSLSKSS-KSPVTVYINCTSLTEASAIFK 224 (529)
T ss_pred CCCCccchHHHHHHHHHHHHhhhh--cccCcceEeeCCCCcchHHHHHHHHHhhhhhc-ccceeEEEeeccccchHHHHH
Confidence 356789999999999999876543 34557888999999999999999998876443 223557777776556777888
Q ss_pred HHHHHhcCCCCCCCCHHHHHHHHHHHhcC--CceeEEeccccccChhHHHHhhcccCC-CCCCcEEEEeecchh------
Q 007817 247 ALLESITSTNCDFKTLNEVQVKLRIIVDG--KKFLLVLDDVWNENYNLWEILKAPFMA-GARNSKIIVTTCHSN------ 317 (588)
Q Consensus 247 ~il~~l~~~~~~~~~~~~l~~~l~~~l~~--k~~LLVlDdv~~~~~~~~~~l~~~l~~-~~~gs~ilvTTR~~~------ 317 (588)
.|...+...........+.+..+.....+ +.+|+|+|.++.-....-..+...|.+ .-+++++|+.---..
T Consensus 225 kI~~~~~q~~~s~~~~~~~~~~~~~h~~q~k~~~llVlDEmD~L~tr~~~vLy~lFewp~lp~sr~iLiGiANslDlTdR 304 (529)
T KOG2227|consen 225 KIFSSLLQDLVSPGTGMQHLEKFEKHTKQSKFMLLLVLDEMDHLITRSQTVLYTLFEWPKLPNSRIILIGIANSLDLTDR 304 (529)
T ss_pred HHHHHHHHHhcCCchhHHHHHHHHHHHhcccceEEEEechhhHHhhcccceeeeehhcccCCcceeeeeeehhhhhHHHH
Confidence 88777722211122224445555555543 368999998843211111222222322 224566554331111
Q ss_pred hhhhc----c-ccceeeCCCCCHHHHHHHHHHhhcCCCCC-CCChhHHHHHHHHHHHhCCCchHHHHhh
Q 007817 318 VASMM----G-SVEHYNLKLLSDEYCWSVFVKHAFERRDA-GAHQFSKLFRKKIVAKCGGLPLAVSTLG 380 (588)
Q Consensus 318 v~~~~----~-~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~-~~~~~~~~i~~~I~~~c~GlPLai~~~~ 380 (588)
....+ . ....+...|-+.++-.++|..+.-..... ..+..++-.|++++.-.|-+--|+.+.-
T Consensus 305 ~LprL~~~~~~~P~~l~F~PYTk~qI~~Il~~rl~~~~t~~~~~~Aie~~ArKvaa~SGDlRkaLdv~R 373 (529)
T KOG2227|consen 305 FLPRLNLDLTIKPKLLVFPPYTKDQIVEILQQRLSEESTSIFLNAAIELCARKVAAPSGDLRKALDVCR 373 (529)
T ss_pred HhhhhhhccCCCCceeeecCCCHHHHHHHHHHHHhcccccccchHHHHHHHHHhccCchhHHHHHHHHH
Confidence 11111 1 23568889999999999999987432221 1222344444444444444555554443
No 89
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=98.11 E-value=3.7e-05 Score=78.42 Aligned_cols=148 Identities=17% Similarity=0.155 Sum_probs=85.8
Q ss_pred CceeechhhHHHHHHHHhcCCCCCCCCeEEEEEEccCCCcHHHHHHHHHcccccccccccEEEEEEeCCcccHHHHHHHH
Q 007817 169 RAVYGRDEDKARMLEMVLSDDPTTDANFCVIPIVGMAGAGKTMLAREVYNDRAVQNFKFDVKAWVSVSDDFDVLRISRAL 248 (588)
Q Consensus 169 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i 248 (588)
.+++|.+...+.+..++.... ...++.++|++|+|||++|+.+++.... . ...++.+. .... ..+..
T Consensus 21 ~~~~~~~~~~~~l~~~~~~~~-----~~~~lll~G~~G~GKT~la~~l~~~~~~---~---~~~i~~~~-~~~~-~i~~~ 87 (316)
T PHA02544 21 DECILPAADKETFKSIVKKGR-----IPNMLLHSPSPGTGKTTVAKALCNEVGA---E---VLFVNGSD-CRID-FVRNR 87 (316)
T ss_pred HHhcCcHHHHHHHHHHHhcCC-----CCeEEEeeCcCCCCHHHHHHHHHHHhCc---c---ceEeccCc-ccHH-HHHHH
Confidence 568999999999999986432 3467888999999999999999885421 1 22344433 1111 11111
Q ss_pred HHHhcCCCCCCCCHHHHHHHHHHHhcCCceeEEecccccc-ChhHHHHhhcccCCCCCCcEEEEeecchhhh-hh-cccc
Q 007817 249 LESITSTNCDFKTLNEVQVKLRIIVDGKKFLLVLDDVWNE-NYNLWEILKAPFMAGARNSKIIVTTCHSNVA-SM-MGSV 325 (588)
Q Consensus 249 l~~l~~~~~~~~~~~~l~~~l~~~l~~k~~LLVlDdv~~~-~~~~~~~l~~~l~~~~~gs~ilvTTR~~~v~-~~-~~~~ 325 (588)
+..+... . -+.+.+-+||+||+... .......+...+.....++.+|+||...... .. ....
T Consensus 88 l~~~~~~-------------~--~~~~~~~vliiDe~d~l~~~~~~~~L~~~le~~~~~~~~Ilt~n~~~~l~~~l~sR~ 152 (316)
T PHA02544 88 LTRFAST-------------V--SLTGGGKVIIIDEFDRLGLADAQRHLRSFMEAYSKNCSFIITANNKNGIIEPLRSRC 152 (316)
T ss_pred HHHHHHh-------------h--cccCCCeEEEEECcccccCHHHHHHHHHHHHhcCCCceEEEEcCChhhchHHHHhhc
Confidence 1111000 0 01134568999999655 2233334444444445677888888654221 11 1123
Q ss_pred ceeeCCCCCHHHHHHHHHH
Q 007817 326 EHYNLKLLSDEYCWSVFVK 344 (588)
Q Consensus 326 ~~~~l~~L~~~ea~~Lf~~ 344 (588)
..+.+...+.++...++..
T Consensus 153 ~~i~~~~p~~~~~~~il~~ 171 (316)
T PHA02544 153 RVIDFGVPTKEEQIEMMKQ 171 (316)
T ss_pred eEEEeCCCCHHHHHHHHHH
Confidence 4677777777777666543
No 90
>CHL00181 cbbX CbbX; Provisional
Probab=98.09 E-value=0.00016 Score=72.25 Aligned_cols=135 Identities=14% Similarity=0.116 Sum_probs=74.7
Q ss_pred EEEEEEccCCCcHHHHHHHHHcccccccccccEEEEEEeCCcccHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhcCC
Q 007817 197 CVIPIVGMAGAGKTMLAREVYNDRAVQNFKFDVKAWVSVSDDFDVLRISRALLESITSTNCDFKTLNEVQVKLRIIVDGK 276 (588)
Q Consensus 197 ~vv~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~il~~l~~~~~~~~~~~~l~~~l~~~l~~k 276 (588)
..+.++|++|+||||+|+.+++.....+ .-...-|+.++.. + +...+.+.. .......+... .
T Consensus 60 ~~ill~G~pGtGKT~lAr~la~~~~~~g-~~~~~~~~~v~~~----~----l~~~~~g~~-----~~~~~~~l~~a---~ 122 (287)
T CHL00181 60 LHMSFTGSPGTGKTTVALKMADILYKLG-YIKKGHLLTVTRD----D----LVGQYIGHT-----APKTKEVLKKA---M 122 (287)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHcC-CCCCCceEEecHH----H----HHHHHhccc-----hHHHHHHHHHc---c
Confidence 4588999999999999999987543222 1111124444421 1 222221111 11112222221 2
Q ss_pred ceeEEecccccc---------ChhHHHHhhcccCCCCCCcEEEEeecchhhhhhc--------cccceeeCCCCCHHHHH
Q 007817 277 KFLLVLDDVWNE---------NYNLWEILKAPFMAGARNSKIIVTTCHSNVASMM--------GSVEHYNLKLLSDEYCW 339 (588)
Q Consensus 277 ~~LLVlDdv~~~---------~~~~~~~l~~~l~~~~~gs~ilvTTR~~~v~~~~--------~~~~~~~l~~L~~~ea~ 339 (588)
.-+|+||++... .....+.+...+.....+..||+++......... .....+.+++++.++..
T Consensus 123 ggVLfIDE~~~l~~~~~~~~~~~e~~~~L~~~me~~~~~~~vI~ag~~~~~~~~~~~np~L~sR~~~~i~F~~~t~~el~ 202 (287)
T CHL00181 123 GGVLFIDEAYYLYKPDNERDYGSEAIEILLQVMENQRDDLVVIFAGYKDRMDKFYESNPGLSSRIANHVDFPDYTPEELL 202 (287)
T ss_pred CCEEEEEccchhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCcHHHHHHHhcCHHHHHhCCceEEcCCcCHHHHH
Confidence 359999999542 1223344444454444556777777543332111 12357999999999999
Q ss_pred HHHHHhhcC
Q 007817 340 SVFVKHAFE 348 (588)
Q Consensus 340 ~Lf~~~a~~ 348 (588)
+++...+-.
T Consensus 203 ~I~~~~l~~ 211 (287)
T CHL00181 203 QIAKIMLEE 211 (287)
T ss_pred HHHHHHHHH
Confidence 998887643
No 91
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=98.08 E-value=0.00014 Score=79.17 Aligned_cols=193 Identities=16% Similarity=0.138 Sum_probs=113.1
Q ss_pred CceeechhhHHHHHHHHhcCCCCCCCCeEEEEEEccCCCcHHHHHHHHHcccccccccccEEEEEEeCCcccHHHHHHHH
Q 007817 169 RAVYGRDEDKARMLEMVLSDDPTTDANFCVIPIVGMAGAGKTMLAREVYNDRAVQNFKFDVKAWVSVSDDFDVLRISRAL 248 (588)
Q Consensus 169 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i 248 (588)
.+++|-+.-++.|..++.... -...+.++|+.|+||||+|+.+++..-... .... ..+....+ .+.+
T Consensus 16 ~diiGqe~iv~~L~~~i~~~~-----i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~~-~~~~---~pC~~C~~----C~~i 82 (563)
T PRK06647 16 NSLEGQDFVVETLKHSIESNK-----IANAYIFSGPRGVGKTSSARAFARCLNCVN-GPTP---MPCGECSS----CKSI 82 (563)
T ss_pred HHccCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHhhcccc-CCCC---CCCccchH----HHHH
Confidence 468999999999999987543 346788999999999999999988653211 0000 00000000 0111
Q ss_pred HHHhcC-----CCCCCCCHHHHHHHH---HHH-hcCCceeEEeccccccChhHHHHhhcccCCCCCCcEEEEeecc-hhh
Q 007817 249 LESITS-----TNCDFKTLNEVQVKL---RII-VDGKKFLLVLDDVWNENYNLWEILKAPFMAGARNSKIIVTTCH-SNV 318 (588)
Q Consensus 249 l~~l~~-----~~~~~~~~~~l~~~l---~~~-l~~k~~LLVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTTR~-~~v 318 (588)
...-.. ........+++.... ... ..+++-++|+|+++..+...++.+...+......+.+|++|.. ..+
T Consensus 83 ~~~~~~dv~~idgas~~~vddIr~l~e~~~~~p~~~~~KVvIIDEa~~Ls~~a~naLLK~LEepp~~~vfI~~tte~~kL 162 (563)
T PRK06647 83 DNDNSLDVIEIDGASNTSVQDVRQIKEEIMFPPASSRYRVYIIDEVHMLSNSAFNALLKTIEEPPPYIVFIFATTEVHKL 162 (563)
T ss_pred HcCCCCCeEEecCcccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhcCHHHHHHHHHhhccCCCCEEEEEecCChHHh
Confidence 100000 000012233332211 111 2356668999999887777788888877765556666666543 333
Q ss_pred hhhc-cccceeeCCCCCHHHHHHHHHHhhcCCCCCCCChhHHHHHHHHHHHhCCCchHHHH
Q 007817 319 ASMM-GSVEHYNLKLLSDEYCWSVFVKHAFERRDAGAHQFSKLFRKKIVAKCGGLPLAVST 378 (588)
Q Consensus 319 ~~~~-~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~i~~~I~~~c~GlPLai~~ 378 (588)
...+ .....+++.+++.++....+.+.+...+.. ...+....|++.++|.+-.+..
T Consensus 163 ~~tI~SRc~~~~f~~l~~~el~~~L~~i~~~egi~----id~eAl~lLa~~s~GdlR~als 219 (563)
T PRK06647 163 PATIKSRCQHFNFRLLSLEKIYNMLKKVCLEDQIK----YEDEALKWIAYKSTGSVRDAYT 219 (563)
T ss_pred HHHHHHhceEEEecCCCHHHHHHHHHHHHHHcCCC----CCHHHHHHHHHHcCCCHHHHHH
Confidence 3222 234578999999999998888776433221 1223355688999998854433
No 92
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=98.07 E-value=3.9e-05 Score=74.34 Aligned_cols=185 Identities=15% Similarity=0.119 Sum_probs=115.3
Q ss_pred CCceeechhhHHHHHHHHhcCCCCCCCCeEEEEEEccCCCcHHHHHHHHHcccccccccccEEE-EEEeCCcccHHHHHH
Q 007817 168 ERAVYGRDEDKARMLEMVLSDDPTTDANFCVIPIVGMAGAGKTMLAREVYNDRAVQNFKFDVKA-WVSVSDDFDVLRISR 246 (588)
Q Consensus 168 ~~~~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~-wv~v~~~~~~~~~~~ 246 (588)
-.+++|-+..+.-|.+.+... ..+....+|++|.|||+-|..++...--.+ .|.+++ =.++|..-... +
T Consensus 35 ~de~~gQe~vV~~L~~a~~~~------~lp~~LFyGPpGTGKTStalafar~L~~~~-~~~~rvl~lnaSderGis-v-- 104 (346)
T KOG0989|consen 35 FDELAGQEHVVQVLKNALLRR------ILPHYLFYGPPGTGKTSTALAFARALNCEQ-LFPCRVLELNASDERGIS-V-- 104 (346)
T ss_pred HHhhcchHHHHHHHHHHHhhc------CCceEEeeCCCCCcHhHHHHHHHHHhcCcc-ccccchhhhccccccccc-c--
Confidence 346789888888888888752 457899999999999999998888765544 565544 23444332211 0
Q ss_pred HHHHHhcCCCCCCCCHHHHHHHHHHHh--cCCc-eeEEeccccccChhHHHHhhcccCCCCCCcEEEEeecch-hhhhhc
Q 007817 247 ALLESITSTNCDFKTLNEVQVKLRIIV--DGKK-FLLVLDDVWNENYNLWEILKAPFMAGARNSKIIVTTCHS-NVASMM 322 (588)
Q Consensus 247 ~il~~l~~~~~~~~~~~~l~~~l~~~l--~~k~-~LLVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTTR~~-~v~~~~ 322 (588)
. .....+...+........ ..++ =.+|||+++....+.|..++..+......++.++.+..- .+...+
T Consensus 105 --v------r~Kik~fakl~~~~~~~~~~~~~~fKiiIlDEcdsmtsdaq~aLrr~mE~~s~~trFiLIcnylsrii~pi 176 (346)
T KOG0989|consen 105 --V------REKIKNFAKLTVLLKRSDGYPCPPFKIIILDECDSMTSDAQAALRRTMEDFSRTTRFILICNYLSRIIRPL 176 (346)
T ss_pred --h------hhhhcCHHHHhhccccccCCCCCcceEEEEechhhhhHHHHHHHHHHHhccccceEEEEEcCChhhCChHH
Confidence 0 001112222111111000 1234 378899999988899999999888766666655544333 222222
Q ss_pred -cccceeeCCCCCHHHHHHHHHHhhcCCCCCCCChhHHHHHHHHHHHhCCCch
Q 007817 323 -GSVEHYNLKLLSDEYCWSVFVKHAFERRDAGAHQFSKLFRKKIVAKCGGLPL 374 (588)
Q Consensus 323 -~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~i~~~I~~~c~GlPL 374 (588)
.....+..++|.+++...-+...+-..+...+.. ..+.|++.++|---
T Consensus 177 ~SRC~KfrFk~L~d~~iv~rL~~Ia~~E~v~~d~~----al~~I~~~S~GdLR 225 (346)
T KOG0989|consen 177 VSRCQKFRFKKLKDEDIVDRLEKIASKEGVDIDDD----ALKLIAKISDGDLR 225 (346)
T ss_pred HhhHHHhcCCCcchHHHHHHHHHHHHHhCCCCCHH----HHHHHHHHcCCcHH
Confidence 2335689999999999888888774443333322 34568888888533
No 93
>CHL00095 clpC Clp protease ATP binding subunit
Probab=98.07 E-value=3.7e-05 Score=88.22 Aligned_cols=157 Identities=16% Similarity=0.123 Sum_probs=86.7
Q ss_pred CceeechhhHHHHHHHHhcCCCCCCCCeEEEEEEccCCCcHHHHHHHHHccccccc---ccccEEEEEEeCCcccHHHHH
Q 007817 169 RAVYGRDEDKARMLEMVLSDDPTTDANFCVIPIVGMAGAGKTMLAREVYNDRAVQN---FKFDVKAWVSVSDDFDVLRIS 245 (588)
Q Consensus 169 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~---~~f~~~~wv~v~~~~~~~~~~ 245 (588)
..++||+++++++++.|.... ..-+.++|++|+|||++|+.++....... ..-+..+|. + +...+
T Consensus 179 ~~~igr~~ei~~~~~~L~r~~------~~n~lL~G~pGvGKTal~~~la~~i~~~~vp~~l~~~~i~~-l----~~~~l- 246 (821)
T CHL00095 179 DPVIGREKEIERVIQILGRRT------KNNPILIGEPGVGKTAIAEGLAQRIVNRDVPDILEDKLVIT-L----DIGLL- 246 (821)
T ss_pred CCCCCcHHHHHHHHHHHcccc------cCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEE-e----eHHHH-
Confidence 358999999999999997543 23456999999999999999988653211 011234442 1 11111
Q ss_pred HHHHHHhcCCCCCCCCHHHHHH-HHHHHhcCCceeEEeccccccC-------hhHHHHhhcccCCCCCCcEEEEeecchh
Q 007817 246 RALLESITSTNCDFKTLNEVQV-KLRIIVDGKKFLLVLDDVWNEN-------YNLWEILKAPFMAGARNSKIIVTTCHSN 317 (588)
Q Consensus 246 ~~il~~l~~~~~~~~~~~~l~~-~l~~~l~~k~~LLVlDdv~~~~-------~~~~~~l~~~l~~~~~gs~ilvTTR~~~ 317 (588)
+.+.. ...+.++... .+.+.-..++.+|++|+++.-. ......+..+.... ..-++|.+|..++
T Consensus 247 ------~ag~~-~~ge~e~rl~~i~~~~~~~~~~ILfiDEih~l~~~g~~~g~~~~a~lLkp~l~r-g~l~~IgaTt~~e 318 (821)
T CHL00095 247 ------LAGTK-YRGEFEERLKRIFDEIQENNNIILVIDEVHTLIGAGAAEGAIDAANILKPALAR-GELQCIGATTLDE 318 (821)
T ss_pred ------hccCC-CccHHHHHHHHHHHHHHhcCCeEEEEecHHHHhcCCCCCCcccHHHHhHHHHhC-CCcEEEEeCCHHH
Confidence 11111 1122222222 2222223568999999995311 00111222222222 1345666665554
Q ss_pred hhhh-------ccccceeeCCCCCHHHHHHHHHHh
Q 007817 318 VASM-------MGSVEHYNLKLLSDEYCWSVFVKH 345 (588)
Q Consensus 318 v~~~-------~~~~~~~~l~~L~~~ea~~Lf~~~ 345 (588)
.... ......+.+...+.++...++...
T Consensus 319 y~~~ie~D~aL~rRf~~I~v~ep~~~e~~aILr~l 353 (821)
T CHL00095 319 YRKHIEKDPALERRFQPVYVGEPSVEETIEILFGL 353 (821)
T ss_pred HHHHHhcCHHHHhcceEEecCCCCHHHHHHHHHHH
Confidence 4221 123467889999999988887643
No 94
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=98.06 E-value=5.6e-05 Score=79.08 Aligned_cols=179 Identities=14% Similarity=0.118 Sum_probs=97.4
Q ss_pred CCceeechhhHHHHHHHHhcCCC-------CCCCCeEEEEEEccCCCcHHHHHHHHHcccccccccccEEEEEEeCCccc
Q 007817 168 ERAVYGRDEDKARMLEMVLSDDP-------TTDANFCVIPIVGMAGAGKTMLAREVYNDRAVQNFKFDVKAWVSVSDDFD 240 (588)
Q Consensus 168 ~~~~vGR~~e~~~l~~~L~~~~~-------~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~wv~v~~~~~ 240 (588)
...+.|++..++++.+.+..+-. .+-..++-|.++|++|+|||+||+.+++.... . |+.++.
T Consensus 130 ~~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~~~~---~-----~i~v~~--- 198 (389)
T PRK03992 130 YEDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNA---T-----FIRVVG--- 198 (389)
T ss_pred HHHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHHhCC---C-----EEEeeh---
Confidence 34688999999999887643211 01134567899999999999999999985432 2 222211
Q ss_pred HHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhcCCceeEEecccccc-----------ChhHHHHhhccc---CC--CC
Q 007817 241 VLRISRALLESITSTNCDFKTLNEVQVKLRIIVDGKKFLLVLDDVWNE-----------NYNLWEILKAPF---MA--GA 304 (588)
Q Consensus 241 ~~~~~~~il~~l~~~~~~~~~~~~l~~~l~~~l~~k~~LLVlDdv~~~-----------~~~~~~~l~~~l---~~--~~ 304 (588)
..+ .....+ .....+...+...-...+.+|+|||++.- +......+...+ .. ..
T Consensus 199 -~~l----~~~~~g-----~~~~~i~~~f~~a~~~~p~IlfiDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~~ 268 (389)
T PRK03992 199 -SEL----VQKFIG-----EGARLVRELFELAREKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAEMDGFDPR 268 (389)
T ss_pred -HHH----hHhhcc-----chHHHHHHHHHHHHhcCCeEEEEechhhhhcccccCCCCccHHHHHHHHHHHHhccccCCC
Confidence 111 111100 01111111222222356789999998542 111122222222 11 12
Q ss_pred CCcEEEEeecchhhhhh-c-c---ccceeeCCCCCHHHHHHHHHHhhcCCCCCCCChhHHHHHHHHHHHhCCC
Q 007817 305 RNSKIIVTTCHSNVASM-M-G---SVEHYNLKLLSDEYCWSVFVKHAFERRDAGAHQFSKLFRKKIVAKCGGL 372 (588)
Q Consensus 305 ~gs~ilvTTR~~~v~~~-~-~---~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~i~~~I~~~c~Gl 372 (588)
.+..||.||........ + . -...+++++.+.++-.++|..+...... .....+ ..+++.+.|.
T Consensus 269 ~~v~VI~aTn~~~~ld~allRpgRfd~~I~v~~P~~~~R~~Il~~~~~~~~~-~~~~~~----~~la~~t~g~ 336 (389)
T PRK03992 269 GNVKIIAATNRIDILDPAILRPGRFDRIIEVPLPDEEGRLEILKIHTRKMNL-ADDVDL----EELAELTEGA 336 (389)
T ss_pred CCEEEEEecCChhhCCHHHcCCccCceEEEECCCCHHHHHHHHHHHhccCCC-CCcCCH----HHHHHHcCCC
Confidence 35677877765433221 1 1 2356999999999999999987643221 111222 3466666664
No 95
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=98.04 E-value=0.00012 Score=73.17 Aligned_cols=205 Identities=17% Similarity=0.185 Sum_probs=118.9
Q ss_pred CCceeechhhHHHHHHHHhcCCCCCCCCeEEEEEEccCCCcHHHHHHHHHcccccccccccEEEEEEeCCcccHHHHHHH
Q 007817 168 ERAVYGRDEDKARMLEMVLSDDPTTDANFCVIPIVGMAGAGKTMLAREVYNDRAVQNFKFDVKAWVSVSDDFDVLRISRA 247 (588)
Q Consensus 168 ~~~~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~ 247 (588)
++.|.+|+.++..+..++..... .-+..|.|.|-+|.|||.+.+++.+.... ..+|+++-+.++...++..
T Consensus 5 ~~~v~~Re~qi~~L~~Llg~~~~---~~PS~~~iyG~sgTGKT~~~r~~l~~~n~------~~vw~n~~ecft~~~lle~ 75 (438)
T KOG2543|consen 5 EPNVPCRESQIRRLKSLLGNNSC---TIPSIVHIYGHSGTGKTYLVRQLLRKLNL------ENVWLNCVECFTYAILLEK 75 (438)
T ss_pred ccCccchHHHHHHHHHHhCCCCc---ccceeEEEeccCCCchhHHHHHHHhhcCC------cceeeehHHhccHHHHHHH
Confidence 56788999999999998865532 23456699999999999999999997633 3589999999999999999
Q ss_pred HHHHhcCCCCCCCCH----HH---HHHHHHHH--hc--CCceeEEecccccc---ChhHHHHhhcccCCCCCCcEEEEee
Q 007817 248 LLESITSTNCDFKTL----NE---VQVKLRII--VD--GKKFLLVLDDVWNE---NYNLWEILKAPFMAGARNSKIIVTT 313 (588)
Q Consensus 248 il~~l~~~~~~~~~~----~~---l~~~l~~~--l~--~k~~LLVlDdv~~~---~~~~~~~l~~~l~~~~~gs~ilvTT 313 (588)
|+...+....+.... +. ....+.++ .. ++.++||||+++.- +......+...-.......-+|+++
T Consensus 76 IL~~~~~~d~dg~~~~~~~en~~d~i~~l~q~~~~t~~d~~~~liLDnad~lrD~~a~ll~~l~~L~el~~~~~i~iils 155 (438)
T KOG2543|consen 76 ILNKSQLADKDGDKVEGDAENFSDFIYLLVQWPAATNRDQKVFLILDNADALRDMDAILLQCLFRLYELLNEPTIVIILS 155 (438)
T ss_pred HHHHhccCCCchhhhhhHHHHHHHHHHHHHhhHHhhccCceEEEEEcCHHhhhccchHHHHHHHHHHHHhCCCceEEEEe
Confidence 999985222221111 22 22222221 11 46899999998432 2222222222111111123334444
Q ss_pred cchh---hhhhcccc--ceeeCCCCCHHHHHHHHHHhhcCCCCCC-CChhHHHHHHHHHHHhCCCchHHHHhhhh
Q 007817 314 CHSN---VASMMGSV--EHYNLKLLSDEYCWSVFVKHAFERRDAG-AHQFSKLFRKKIVAKCGGLPLAVSTLGGL 382 (588)
Q Consensus 314 R~~~---v~~~~~~~--~~~~l~~L~~~ea~~Lf~~~a~~~~~~~-~~~~~~~i~~~I~~~c~GlPLai~~~~~~ 382 (588)
-... ....++.. .++....-+.+|-..++.+.-.+..... -...+.-+..-....|+ -+-.+..+...
T Consensus 156 ~~~~e~~y~~n~g~~~i~~l~fP~Ys~~e~~~Il~~~~p~~r~~~~ya~fl~v~l~vF~~~cr-d~~eL~~~~~~ 229 (438)
T KOG2543|consen 156 APSCEKQYLINTGTLEIVVLHFPQYSVEETQVILSRDNPGKRKLDVYAQFLHVLLQVFYMACR-DVNELRSLISL 229 (438)
T ss_pred ccccHHHhhcccCCCCceEEecCCCCHHHHHHHHhcCCccccchHHHHHHHHHHHHHHHHHhC-CHHHHHHHHHH
Confidence 3221 11113332 4577788899999988876432211100 01112223344556666 55555555544
No 96
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.04 E-value=0.0001 Score=80.81 Aligned_cols=194 Identities=14% Similarity=0.157 Sum_probs=109.9
Q ss_pred CceeechhhHHHHHHHHhcCCCCCCCCeEEEEEEccCCCcHHHHHHHHHcccccccccccEEEEEEeCCcccHHHHHHHH
Q 007817 169 RAVYGRDEDKARMLEMVLSDDPTTDANFCVIPIVGMAGAGKTMLAREVYNDRAVQNFKFDVKAWVSVSDDFDVLRISRAL 248 (588)
Q Consensus 169 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i 248 (588)
.+++|.+.-.+.|.+++.... -...+.++|+.|+||||+|+.+++...-.. ..+. .+++.-.....|
T Consensus 16 ~~iiGq~~v~~~L~~~i~~~~-----~~hayLf~Gp~G~GKtt~A~~lak~l~c~~-~~~~-------~~c~~c~~c~~i 82 (576)
T PRK14965 16 SDLTGQEHVSRTLQNAIDTGR-----VAHAFLFTGARGVGKTSTARILAKALNCEQ-GLTA-------EPCNVCPPCVEI 82 (576)
T ss_pred HHccCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHhhcCCC-CCCC-------CCCCccHHHHHH
Confidence 468999998999999886542 345678999999999999999887643211 1000 000000111111
Q ss_pred HHH-------hcCC-CCCCCCHHHHHHHHHHH-hcCCceeEEeccccccChhHHHHhhcccCCCCCCcEEEEee-cchhh
Q 007817 249 LES-------ITST-NCDFKTLNEVQVKLRII-VDGKKFLLVLDDVWNENYNLWEILKAPFMAGARNSKIIVTT-CHSNV 318 (588)
Q Consensus 249 l~~-------l~~~-~~~~~~~~~l~~~l~~~-l~~k~~LLVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTT-R~~~v 318 (588)
... +.+. ....++..++...+... ..+++-++|+|+++..+....+.|...+......+.+|++| ....+
T Consensus 83 ~~g~~~d~~eid~~s~~~v~~ir~l~~~~~~~p~~~~~KVvIIdev~~Lt~~a~naLLk~LEepp~~~~fIl~t~~~~kl 162 (576)
T PRK14965 83 TEGRSVDVFEIDGASNTGVDDIRELRENVKYLPSRSRYKIFIIDEVHMLSTNAFNALLKTLEEPPPHVKFIFATTEPHKV 162 (576)
T ss_pred hcCCCCCeeeeeccCccCHHHHHHHHHHHHhccccCCceEEEEEChhhCCHHHHHHHHHHHHcCCCCeEEEEEeCChhhh
Confidence 000 0000 00011122222222111 12445589999998877777888887776655566666555 43444
Q ss_pred hhhc-cccceeeCCCCCHHHHHHHHHHhhcCCCCCCCChhHHHHHHHHHHHhCCCc-hHHHHh
Q 007817 319 ASMM-GSVEHYNLKLLSDEYCWSVFVKHAFERRDAGAHQFSKLFRKKIVAKCGGLP-LAVSTL 379 (588)
Q Consensus 319 ~~~~-~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~i~~~I~~~c~GlP-Lai~~~ 379 (588)
...+ .....+++.+++.++....+...+-..+... .......|++.++|.. .|+..+
T Consensus 163 ~~tI~SRc~~~~f~~l~~~~i~~~L~~i~~~egi~i----~~~al~~la~~a~G~lr~al~~L 221 (576)
T PRK14965 163 PITILSRCQRFDFRRIPLQKIVDRLRYIADQEGISI----SDAALALVARKGDGSMRDSLSTL 221 (576)
T ss_pred hHHHHHhhhhhhcCCCCHHHHHHHHHHHHHHhCCCC----CHHHHHHHHHHcCCCHHHHHHHH
Confidence 4332 2346788999999999888876653222111 1233456888998866 444444
No 97
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=98.03 E-value=0.00015 Score=73.68 Aligned_cols=97 Identities=14% Similarity=0.166 Sum_probs=67.8
Q ss_pred CCceeEEeccccccChhHHHHhhcccCCCCCCcEEEEeecchhh-hhh-ccccceeeCCCCCHHHHHHHHHHhhcCCCCC
Q 007817 275 GKKFLLVLDDVWNENYNLWEILKAPFMAGARNSKIIVTTCHSNV-ASM-MGSVEHYNLKLLSDEYCWSVFVKHAFERRDA 352 (588)
Q Consensus 275 ~k~~LLVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTTR~~~v-~~~-~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~ 352 (588)
+++-++|+|+++..+....+.+...+.....++.+|+||.+... ... .+....+.+.+++.+++.+.+......
T Consensus 105 ~~~kv~iI~~a~~m~~~aaNaLLK~LEEPp~~~~fiL~t~~~~~ll~TI~SRc~~~~~~~~~~~~~~~~L~~~~~~---- 180 (328)
T PRK05707 105 GGRKVVLIEPAEAMNRNAANALLKSLEEPSGDTVLLLISHQPSRLLPTIKSRCQQQACPLPSNEESLQWLQQALPE---- 180 (328)
T ss_pred CCCeEEEECChhhCCHHHHHHHHHHHhCCCCCeEEEEEECChhhCcHHHHhhceeeeCCCcCHHHHHHHHHHhccc----
Confidence 34445678999888888888888888776667778777776533 322 234567999999999999988765311
Q ss_pred CCChhHHHHHHHHHHHhCCCchHHHHh
Q 007817 353 GAHQFSKLFRKKIVAKCGGLPLAVSTL 379 (588)
Q Consensus 353 ~~~~~~~~i~~~I~~~c~GlPLai~~~ 379 (588)
.. .+.+..++..++|.|+....+
T Consensus 181 -~~---~~~~~~~l~la~Gsp~~A~~l 203 (328)
T PRK05707 181 -SD---ERERIELLTLAGGSPLRALQL 203 (328)
T ss_pred -CC---hHHHHHHHHHcCCCHHHHHHH
Confidence 11 122446789999999865544
No 98
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=98.03 E-value=9e-05 Score=70.55 Aligned_cols=127 Identities=24% Similarity=0.276 Sum_probs=76.9
Q ss_pred CCCCCceeechhhHHHHHHHHhcCCCCCCCCeEEEEEEccCCCcHHHHHHHHHcccccccccccEEEEEEeCCcccHHHH
Q 007817 165 VPTERAVYGRDEDKARMLEMVLSDDPTTDANFCVIPIVGMAGAGKTMLAREVYNDRAVQNFKFDVKAWVSVSDDFDVLRI 244 (588)
Q Consensus 165 ~~~~~~~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~ 244 (588)
.+.-..++|-+.+++.|++-...--. +....-+.++|..|.|||+|++.+.+....++ .+ -|.+.+.
T Consensus 23 ~~~l~~L~Gie~Qk~~l~~Nt~~Fl~--G~pannvLL~G~rGtGKSSlVkall~~y~~~G----LR-lIev~k~------ 89 (249)
T PF05673_consen 23 PIRLDDLIGIERQKEALIENTEQFLQ--GLPANNVLLWGARGTGKSSLVKALLNEYADQG----LR-LIEVSKE------ 89 (249)
T ss_pred CCCHHHhcCHHHHHHHHHHHHHHHHc--CCCCcceEEecCCCCCHHHHHHHHHHHHhhcC----ce-EEEECHH------
Confidence 44556799999999988876543321 22345677899999999999999998665443 11 1223221
Q ss_pred HHHHHHHhcCCCCCCCCHHHHHHHHHHHhcCCceeEEecccc-ccChhHHHHhhcccCCC---CC-CcEEEEeecchhhh
Q 007817 245 SRALLESITSTNCDFKTLNEVQVKLRIIVDGKKFLLVLDDVW-NENYNLWEILKAPFMAG---AR-NSKIIVTTCHSNVA 319 (588)
Q Consensus 245 ~~~il~~l~~~~~~~~~~~~l~~~l~~~l~~k~~LLVlDdv~-~~~~~~~~~l~~~l~~~---~~-gs~ilvTTR~~~v~ 319 (588)
+..++..+...++. ...||+|.+||+- +........++..|..+ .+ ...|-.||..+...
T Consensus 90 -------------~L~~l~~l~~~l~~--~~~kFIlf~DDLsFe~~d~~yk~LKs~LeGgle~~P~NvliyATSNRRHLv 154 (249)
T PF05673_consen 90 -------------DLGDLPELLDLLRD--RPYKFILFCDDLSFEEGDTEYKALKSVLEGGLEARPDNVLIYATSNRRHLV 154 (249)
T ss_pred -------------HhccHHHHHHHHhc--CCCCEEEEecCCCCCCCcHHHHHHHHHhcCccccCCCcEEEEEecchhhcc
Confidence 23445555555542 3579999999983 23334556666655432 22 33444555444443
No 99
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=98.01 E-value=0.00032 Score=74.13 Aligned_cols=162 Identities=17% Similarity=0.106 Sum_probs=92.6
Q ss_pred eEEEEEEccCCCcHHHHHHHHHcccccccccccEEEEEEeCCcccHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhcC
Q 007817 196 FCVIPIVGMAGAGKTMLAREVYNDRAVQNFKFDVKAWVSVSDDFDVLRISRALLESITSTNCDFKTLNEVQVKLRIIVDG 275 (588)
Q Consensus 196 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~il~~l~~~~~~~~~~~~l~~~l~~~l~~ 275 (588)
...+.|+|++|+|||+|++.+++...... .-..+++++.. ++...+...+... ..+.. .+.+++
T Consensus 136 ~n~l~l~G~~G~GKThL~~ai~~~l~~~~-~~~~v~yi~~~------~~~~~~~~~~~~~-----~~~~~----~~~~~~ 199 (405)
T TIGR00362 136 YNPLFIYGGVGLGKTHLLHAIGNEILENN-PNAKVVYVSSE------KFTNDFVNALRNN-----KMEEF----KEKYRS 199 (405)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHHHhC-CCCcEEEEEHH------HHHHHHHHHHHcC-----CHHHH----HHHHHh
Confidence 35688999999999999999998765331 11244566533 3344455444321 22222 222322
Q ss_pred CceeEEeccccccChh--HHHHhhcccCC-CCCCcEEEEeecch-hhh--------hhccccceeeCCCCCHHHHHHHHH
Q 007817 276 KKFLLVLDDVWNENYN--LWEILKAPFMA-GARNSKIIVTTCHS-NVA--------SMMGSVEHYNLKLLSDEYCWSVFV 343 (588)
Q Consensus 276 k~~LLVlDdv~~~~~~--~~~~l~~~l~~-~~~gs~ilvTTR~~-~v~--------~~~~~~~~~~l~~L~~~ea~~Lf~ 343 (588)
.-+|+|||++..... ..+.+...+.. ...+..+|+|+... ... ..+.....+.+++.+.++-..++.
T Consensus 200 -~dlLiiDDi~~l~~~~~~~~~l~~~~n~~~~~~~~iiits~~~p~~l~~l~~~l~SRl~~g~~v~i~~pd~~~r~~il~ 278 (405)
T TIGR00362 200 -VDLLLIDDIQFLAGKERTQEEFFHTFNALHENGKQIVLTSDRPPKELPGLEERLRSRFEWGLVVDIEPPDLETRLAILQ 278 (405)
T ss_pred -CCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCCEEEecCCCHHHHhhhhhhhhhhccCCeEEEeCCCCHHHHHHHHH
Confidence 348999999643211 11223222221 12345678877542 211 112233578999999999999999
Q ss_pred HhhcCCCCCCCChhHHHHHHHHHHHhCCCchHHHH
Q 007817 344 KHAFERRDAGAHQFSKLFRKKIVAKCGGLPLAVST 378 (588)
Q Consensus 344 ~~a~~~~~~~~~~~~~~i~~~I~~~c~GlPLai~~ 378 (588)
+.+...+. .. ..++...|++.+.|.+-.+.-
T Consensus 279 ~~~~~~~~-~l---~~e~l~~ia~~~~~~~r~l~~ 309 (405)
T TIGR00362 279 KKAEEEGL-EL---PDEVLEFIAKNIRSNVRELEG 309 (405)
T ss_pred HHHHHcCC-CC---CHHHHHHHHHhcCCCHHHHHH
Confidence 88754222 11 234556688888887765443
No 100
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=98.01 E-value=0.00024 Score=77.66 Aligned_cols=192 Identities=13% Similarity=0.098 Sum_probs=109.8
Q ss_pred CceeechhhHHHHHHHHhcCCCCCCCCeEEEEEEccCCCcHHHHHHHHHcccccccccccEEEEEEeCCcccHHHHHHHH
Q 007817 169 RAVYGRDEDKARMLEMVLSDDPTTDANFCVIPIVGMAGAGKTMLAREVYNDRAVQNFKFDVKAWVSVSDDFDVLRISRAL 248 (588)
Q Consensus 169 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i 248 (588)
.+++|.+...+.|.+++.... -...+.++|+.|+||||+|+.+.+...... ..+ ..+++.-.....+
T Consensus 16 ~~viGq~~v~~~L~~~i~~~~-----~~hayLf~Gp~GtGKTt~Ak~lAkal~c~~-~~~-------~~pC~~C~~C~~i 82 (559)
T PRK05563 16 EDVVGQEHITKTLKNAIKQGK-----ISHAYLFSGPRGTGKTSAAKIFAKAVNCLN-PPD-------GEPCNECEICKAI 82 (559)
T ss_pred HhccCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHHhcCCC-CCC-------CCCCCccHHHHHH
Confidence 468999999999999987643 346777899999999999999977542211 000 0011111111111
Q ss_pred HHHhcCC-----CCCCCCHHHHH---HHHHHH-hcCCceeEEeccccccChhHHHHhhcccCCCCCCcEEEEee-cchhh
Q 007817 249 LESITST-----NCDFKTLNEVQ---VKLRII-VDGKKFLLVLDDVWNENYNLWEILKAPFMAGARNSKIIVTT-CHSNV 318 (588)
Q Consensus 249 l~~l~~~-----~~~~~~~~~l~---~~l~~~-l~~k~~LLVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTT-R~~~v 318 (588)
....... .......+++. ..+... ..++.-++|+|+++..+...++.|...+........+|++| ....+
T Consensus 83 ~~g~~~dv~eidaas~~~vd~ir~i~~~v~~~p~~~~~kViIIDE~~~Lt~~a~naLLKtLEepp~~~ifIlatt~~~ki 162 (559)
T PRK05563 83 TNGSLMDVIEIDAASNNGVDEIRDIRDKVKYAPSEAKYKVYIIDEVHMLSTGAFNALLKTLEEPPAHVIFILATTEPHKI 162 (559)
T ss_pred hcCCCCCeEEeeccccCCHHHHHHHHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHhcCCCCCeEEEEEeCChhhC
Confidence 1110000 00011222222 222111 13556688999998777777888877776554455555544 33333
Q ss_pred hhhc-cccceeeCCCCCHHHHHHHHHHhhcCCCCCCCChhHHHHHHHHHHHhCCCchHHH
Q 007817 319 ASMM-GSVEHYNLKLLSDEYCWSVFVKHAFERRDAGAHQFSKLFRKKIVAKCGGLPLAVS 377 (588)
Q Consensus 319 ~~~~-~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~i~~~I~~~c~GlPLai~ 377 (588)
...+ .....+.+.+++.++....+...+-..+.... ......|++.++|.+..+.
T Consensus 163 ~~tI~SRc~~~~f~~~~~~ei~~~L~~i~~~egi~i~----~~al~~ia~~s~G~~R~al 218 (559)
T PRK05563 163 PATILSRCQRFDFKRISVEDIVERLKYILDKEGIEYE----DEALRLIARAAEGGMRDAL 218 (559)
T ss_pred cHHHHhHheEEecCCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHHHH
Confidence 3222 23467889999999999888876633222111 2335568888888776443
No 101
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=97.99 E-value=0.00012 Score=73.21 Aligned_cols=133 Identities=15% Similarity=0.097 Sum_probs=73.8
Q ss_pred EEEEEccCCCcHHHHHHHHHcccccccccccEEEEEEeCCcccHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhcCCc
Q 007817 198 VIPIVGMAGAGKTMLAREVYNDRAVQNFKFDVKAWVSVSDDFDVLRISRALLESITSTNCDFKTLNEVQVKLRIIVDGKK 277 (588)
Q Consensus 198 vv~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~il~~l~~~~~~~~~~~~l~~~l~~~l~~k~ 277 (588)
-+.++|++|+|||++|+.+++.....+ .....-|+.++. . +++..+.+.. .......+... ..
T Consensus 60 ~vll~G~pGTGKT~lA~~ia~~l~~~g-~~~~~~~v~v~~----~----~l~~~~~g~~-----~~~~~~~~~~a---~~ 122 (284)
T TIGR02880 60 HMSFTGNPGTGKTTVALRMAQILHRLG-YVRKGHLVSVTR----D----DLVGQYIGHT-----APKTKEILKRA---MG 122 (284)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHHHHcC-CcccceEEEecH----H----HHhHhhcccc-----hHHHHHHHHHc---cC
Confidence 578999999999999987776543322 111112444442 1 1222222211 11122222221 33
Q ss_pred eeEEecccccc---------ChhHHHHhhcccCCCCCCcEEEEeecchhhhhhcc--------ccceeeCCCCCHHHHHH
Q 007817 278 FLLVLDDVWNE---------NYNLWEILKAPFMAGARNSKIIVTTCHSNVASMMG--------SVEHYNLKLLSDEYCWS 340 (588)
Q Consensus 278 ~LLVlDdv~~~---------~~~~~~~l~~~l~~~~~gs~ilvTTR~~~v~~~~~--------~~~~~~l~~L~~~ea~~ 340 (588)
-+|+||++... ....++.+...+.....+.+||+++.......... ....+++++++.+|-..
T Consensus 123 gvL~iDEi~~L~~~~~~~~~~~~~~~~Ll~~le~~~~~~~vI~a~~~~~~~~~~~~np~L~sR~~~~i~fp~l~~edl~~ 202 (284)
T TIGR02880 123 GVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENQRDDLVVILAGYKDRMDSFFESNPGFSSRVAHHVDFPDYSEAELLV 202 (284)
T ss_pred cEEEEechhhhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCcHHHHHHHhhCHHHHhhCCcEEEeCCcCHHHHHH
Confidence 68999999522 12234455555555445667777765432211111 13568999999999999
Q ss_pred HHHHhhc
Q 007817 341 VFVKHAF 347 (588)
Q Consensus 341 Lf~~~a~ 347 (588)
++...+-
T Consensus 203 I~~~~l~ 209 (284)
T TIGR02880 203 IAGLMLK 209 (284)
T ss_pred HHHHHHH
Confidence 9988763
No 102
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=97.96 E-value=0.00075 Score=64.97 Aligned_cols=181 Identities=14% Similarity=0.131 Sum_probs=107.2
Q ss_pred CceeechhhHHHHHHHHhcCCCCCCCCeEEEEEEccCCCcHHHHHHHHHcccccccccccEEEEEEeCCcccHHHHHHHH
Q 007817 169 RAVYGRDEDKARMLEMVLSDDPTTDANFCVIPIVGMAGAGKTMLAREVYNDRAVQNFKFDVKAWVSVSDDFDVLRISRAL 248 (588)
Q Consensus 169 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i 248 (588)
.+|+|-++-++++.=.+..... .+..+--+.++|++|.||||||..+++...+.- .. .+.
T Consensus 26 ~efiGQ~~vk~~L~ifI~AAk~-r~e~lDHvLl~GPPGlGKTTLA~IIA~Emgvn~---k~------tsG---------- 85 (332)
T COG2255 26 DEFIGQEKVKEQLQIFIKAAKK-RGEALDHVLLFGPPGLGKTTLAHIIANELGVNL---KI------TSG---------- 85 (332)
T ss_pred HHhcChHHHHHHHHHHHHHHHh-cCCCcCeEEeeCCCCCcHHHHHHHHHHHhcCCe---Ee------ccc----------
Confidence 4799999888887777655432 345677899999999999999999999776531 11 000
Q ss_pred HHHhcCCCCCCCCHHHHHHHHHHHhcCCceeEEeccccccChhHHHHhhcccC--------CCCCCcE-----------E
Q 007817 249 LESITSTNCDFKTLNEVQVKLRIIVDGKKFLLVLDDVWNENYNLWEILKAPFM--------AGARNSK-----------I 309 (588)
Q Consensus 249 l~~l~~~~~~~~~~~~l~~~l~~~l~~k~~LLVlDdv~~~~~~~~~~l~~~l~--------~~~~gs~-----------i 309 (588)
+......++...|.. | .+.=+|.+|.++..+...-+.+..++. ..++++| |
T Consensus 86 --------p~leK~gDlaaiLt~-L-e~~DVLFIDEIHrl~~~vEE~LYpaMEDf~lDI~IG~gp~Arsv~ldLppFTLI 155 (332)
T COG2255 86 --------PALEKPGDLAAILTN-L-EEGDVLFIDEIHRLSPAVEEVLYPAMEDFRLDIIIGKGPAARSIRLDLPPFTLI 155 (332)
T ss_pred --------ccccChhhHHHHHhc-C-CcCCeEEEehhhhcChhHHHHhhhhhhheeEEEEEccCCccceEeccCCCeeEe
Confidence 011111222222222 1 234467778876655433333322211 1122333 3
Q ss_pred EEeecchhhhhhcc--ccceeeCCCCCHHHHHHHHHHhhcCCCCCCCChhHHHHHHHHHHHhCCCchHHHHhhhhc
Q 007817 310 IVTTCHSNVASMMG--SVEHYNLKLLSDEYCWSVFVKHAFERRDAGAHQFSKLFRKKIVAKCGGLPLAVSTLGGLL 383 (588)
Q Consensus 310 lvTTR~~~v~~~~~--~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~i~~~I~~~c~GlPLai~~~~~~L 383 (588)
=-|||.-.+.+.+. -.-+.+++--+.+|-.+...+.+..-+. +-..+-+.+|+++..|-|--..-+-+..
T Consensus 156 GATTr~G~lt~PLrdRFGi~~rlefY~~~eL~~Iv~r~a~~l~i----~i~~~~a~eIA~rSRGTPRIAnRLLrRV 227 (332)
T COG2255 156 GATTRAGMLTNPLRDRFGIIQRLEFYTVEELEEIVKRSAKILGI----EIDEEAALEIARRSRGTPRIANRLLRRV 227 (332)
T ss_pred eeccccccccchhHHhcCCeeeeecCCHHHHHHHHHHHHHHhCC----CCChHHHHHHHHhccCCcHHHHHHHHHH
Confidence 36787655544433 2246788899999999999888743222 1123346789999999997655444443
No 103
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=97.95 E-value=4.2e-05 Score=85.87 Aligned_cols=158 Identities=15% Similarity=0.165 Sum_probs=89.0
Q ss_pred CceeechhhHHHHHHHHhcCCCCCCCCeEEEEEEccCCCcHHHHHHHHHcccccccc---cccEEEEEEeCCcccHHHHH
Q 007817 169 RAVYGRDEDKARMLEMVLSDDPTTDANFCVIPIVGMAGAGKTMLAREVYNDRAVQNF---KFDVKAWVSVSDDFDVLRIS 245 (588)
Q Consensus 169 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~---~f~~~~wv~v~~~~~~~~~~ 245 (588)
..++||+.++.++++.|..... .-+.++|++|+|||+||+.+++....... ..++.+|.. +..
T Consensus 186 ~~liGR~~ei~~~i~iL~r~~~------~n~LLvGppGvGKT~lae~la~~i~~~~vP~~l~~~~~~~l-----~~~--- 251 (758)
T PRK11034 186 DPLIGREKELERAIQVLCRRRK------NNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSL-----DIG--- 251 (758)
T ss_pred CcCcCCCHHHHHHHHHHhccCC------CCeEEECCCCCCHHHHHHHHHHHHHhcCCCchhcCCeEEec-----cHH---
Confidence 3589999999999999876431 34468999999999999999875422110 123444421 111
Q ss_pred HHHHHHhcCCCCCCCCHHHHHHHHHHHh-cCCceeEEecccccc--------ChhHHHHhhcccCCCCCCcEEEEeecch
Q 007817 246 RALLESITSTNCDFKTLNEVQVKLRIIV-DGKKFLLVLDDVWNE--------NYNLWEILKAPFMAGARNSKIIVTTCHS 316 (588)
Q Consensus 246 ~~il~~l~~~~~~~~~~~~l~~~l~~~l-~~k~~LLVlDdv~~~--------~~~~~~~l~~~l~~~~~gs~ilvTTR~~ 316 (588)
.++ .+.. ...+.+.....+...+ +..+.+|+||+++.- .......+..++... ..-++|-+|..+
T Consensus 252 -~ll---aG~~-~~Ge~e~rl~~l~~~l~~~~~~ILfIDEIh~L~g~g~~~~g~~d~~nlLkp~L~~-g~i~vIgATt~~ 325 (758)
T PRK11034 252 -SLL---AGTK-YRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLSS-GKIRVIGSTTYQ 325 (758)
T ss_pred -HHh---cccc-hhhhHHHHHHHHHHHHHhcCCCEEEeccHHHHhccCCCCCcHHHHHHHHHHHHhC-CCeEEEecCChH
Confidence 111 1110 1112222222222222 356789999999631 112222233333322 234566555554
Q ss_pred hhhhh-------ccccceeeCCCCCHHHHHHHHHHhh
Q 007817 317 NVASM-------MGSVEHYNLKLLSDEYCWSVFVKHA 346 (588)
Q Consensus 317 ~v~~~-------~~~~~~~~l~~L~~~ea~~Lf~~~a 346 (588)
+.... ......+.+++++.++...++....
T Consensus 326 E~~~~~~~D~AL~rRFq~I~v~ePs~~~~~~IL~~~~ 362 (758)
T PRK11034 326 EFSNIFEKDRALARRFQKIDITEPSIEETVQIINGLK 362 (758)
T ss_pred HHHHHhhccHHHHhhCcEEEeCCCCHHHHHHHHHHHH
Confidence 43221 1234679999999999999998653
No 104
>PRK06620 hypothetical protein; Validated
Probab=97.94 E-value=8.8e-05 Score=70.77 Aligned_cols=138 Identities=17% Similarity=0.095 Sum_probs=79.0
Q ss_pred EEEEEEccCCCcHHHHHHHHHcccccccccccEEEEEEeCCcccHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhcCC
Q 007817 197 CVIPIVGMAGAGKTMLAREVYNDRAVQNFKFDVKAWVSVSDDFDVLRISRALLESITSTNCDFKTLNEVQVKLRIIVDGK 276 (588)
Q Consensus 197 ~vv~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~il~~l~~~~~~~~~~~~l~~~l~~~l~~k 276 (588)
..+.|+|++|+|||+|++.+++.... .++. ..+. . + ... +.
T Consensus 45 ~~l~l~Gp~G~GKThLl~a~~~~~~~--------~~~~--~~~~--------------------~-~-------~~~-~~ 85 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTKIWQNLSNA--------YIIK--DIFF--------------------N-E-------EIL-EK 85 (214)
T ss_pred ceEEEECCCCCCHHHHHHHHHhccCC--------EEcc--hhhh--------------------c-h-------hHH-hc
Confidence 57899999999999999998775321 1111 0000 0 0 011 12
Q ss_pred ceeEEeccccccChhHHHHhhcccCCCCCCcEEEEeecchhhh-------hhccccceeeCCCCCHHHHHHHHHHhhcCC
Q 007817 277 KFLLVLDDVWNENYNLWEILKAPFMAGARNSKIIVTTCHSNVA-------SMMGSVEHYNLKLLSDEYCWSVFVKHAFER 349 (588)
Q Consensus 277 ~~LLVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTTR~~~v~-------~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~ 349 (588)
.-+|++||++.......-.+...+. ..|..||+|++.+... ..+....++++++++.++-..++.+.+...
T Consensus 86 ~d~lliDdi~~~~~~~lf~l~N~~~--e~g~~ilits~~~p~~l~l~~L~SRl~~gl~~~l~~pd~~~~~~~l~k~~~~~ 163 (214)
T PRK06620 86 YNAFIIEDIENWQEPALLHIFNIIN--EKQKYLLLTSSDKSRNFTLPDLSSRIKSVLSILLNSPDDELIKILIFKHFSIS 163 (214)
T ss_pred CCEEEEeccccchHHHHHHHHHHHH--hcCCEEEEEcCCCccccchHHHHHHHhCCceEeeCCCCHHHHHHHHHHHHHHc
Confidence 3578899996322111111211111 3466899998754331 122344589999999999888888776422
Q ss_pred CCCCCChhHHHHHHHHHHHhCCCchHHHHh
Q 007817 350 RDAGAHQFSKLFRKKIVAKCGGLPLAVSTL 379 (588)
Q Consensus 350 ~~~~~~~~~~~i~~~I~~~c~GlPLai~~~ 379 (588)
+ .. -.+++..-|++.+.|.--.+.-+
T Consensus 164 ~-l~---l~~ev~~~L~~~~~~d~r~l~~~ 189 (214)
T PRK06620 164 S-VT---ISRQIIDFLLVNLPREYSKIIEI 189 (214)
T ss_pred C-CC---CCHHHHHHHHHHccCCHHHHHHH
Confidence 1 11 22344556777777765554443
No 105
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=97.92 E-value=0.00047 Score=69.74 Aligned_cols=198 Identities=14% Similarity=0.078 Sum_probs=114.0
Q ss_pred CceeechhhHHHHHHHHhcCCCCCCCCeEEEEEEccCCCcHHHHHHHHHccccccc------------ccccEEEEEEeC
Q 007817 169 RAVYGRDEDKARMLEMVLSDDPTTDANFCVIPIVGMAGAGKTMLAREVYNDRAVQN------------FKFDVKAWVSVS 236 (588)
Q Consensus 169 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~------------~~f~~~~wv~v~ 236 (588)
.+++|-+..++.+.+.+.... -.....++|+.|+||+++|..+.+..-... ..+.-..|+.-.
T Consensus 4 ~~iiGq~~~~~~L~~~i~~~r-----l~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~~c~~c~~~~~~~~~hPDl~~i~p~ 78 (314)
T PRK07399 4 ANLIGQPLAIELLTAAIKQNR-----IAPAYLFAGPEGVGRKLAALCFIEGLLSQGSPSKNIRRRLEEGNHPDLLWVEPT 78 (314)
T ss_pred HHhCCHHHHHHHHHHHHHhCC-----CCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCCcHhcccccCCCCCEEEEecc
Confidence 357899999999999986543 347899999999999999987766542110 011222333211
Q ss_pred CcccHHHHHHHHHHHhcC--CCCCCCCHHHHHHHHHHHh-----cCCceeEEeccccccChhHHHHhhcccCCCCCCcEE
Q 007817 237 DDFDVLRISRALLESITS--TNCDFKTLNEVQVKLRIIV-----DGKKFLLVLDDVWNENYNLWEILKAPFMAGARNSKI 309 (588)
Q Consensus 237 ~~~~~~~~~~~il~~l~~--~~~~~~~~~~l~~~l~~~l-----~~k~~LLVlDdv~~~~~~~~~~l~~~l~~~~~gs~i 309 (588)
...+-..+...-++..+. .....-..++. ..+.+.+ .+++=++|+|++...+....+.++..+.... .+.+
T Consensus 79 ~~~~g~~~~~~~~~~~~~~~~~~~~I~id~i-r~i~~~l~~~p~~~~~kVvII~~ae~m~~~aaNaLLK~LEEPp-~~~f 156 (314)
T PRK07399 79 YQHQGKLITASEAEEAGLKRKAPPQIRLEQI-REIKRFLSRPPLEAPRKVVVIEDAETMNEAAANALLKTLEEPG-NGTL 156 (314)
T ss_pred ccccccccchhhhhhccccccccccCcHHHH-HHHHHHHccCcccCCceEEEEEchhhcCHHHHHHHHHHHhCCC-CCeE
Confidence 000000000111111110 00011112222 2233333 3556689999998877777888887776544 3445
Q ss_pred EEee-cchhhhhhc-cccceeeCCCCCHHHHHHHHHHhhcCCCCCCCChhHHHHHHHHHHHhCCCchHHHHhh
Q 007817 310 IVTT-CHSNVASMM-GSVEHYNLKLLSDEYCWSVFVKHAFERRDAGAHQFSKLFRKKIVAKCGGLPLAVSTLG 380 (588)
Q Consensus 310 lvTT-R~~~v~~~~-~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~i~~~I~~~c~GlPLai~~~~ 380 (588)
|++| ....+...+ .....+++.++++++..+.+.+..... .... ....++..++|.|..+..+.
T Consensus 157 ILi~~~~~~Ll~TI~SRcq~i~f~~l~~~~~~~~L~~~~~~~---~~~~----~~~~l~~~a~Gs~~~al~~l 222 (314)
T PRK07399 157 ILIAPSPESLLPTIVSRCQIIPFYRLSDEQLEQVLKRLGDEE---ILNI----NFPELLALAQGSPGAAIANI 222 (314)
T ss_pred EEEECChHhCcHHHHhhceEEecCCCCHHHHHHHHHHhhccc---cchh----HHHHHHHHcCCCHHHHHHHH
Confidence 5554 443443332 345789999999999999998764211 1011 12468999999997665543
No 106
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=97.92 E-value=3.6e-05 Score=67.28 Aligned_cols=23 Identities=39% Similarity=0.476 Sum_probs=20.7
Q ss_pred EEEEccCCCcHHHHHHHHHcccc
Q 007817 199 IPIVGMAGAGKTMLAREVYNDRA 221 (588)
Q Consensus 199 v~I~G~gGiGKTtLA~~v~~~~~ 221 (588)
|.|+|++|+|||++|+.+++...
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~ 23 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLG 23 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTT
T ss_pred CEEECcCCCCeeHHHHHHHhhcc
Confidence 57999999999999999999753
No 107
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=97.92 E-value=0.00021 Score=75.91 Aligned_cols=162 Identities=17% Similarity=0.072 Sum_probs=93.6
Q ss_pred eEEEEEEccCCCcHHHHHHHHHccccccccccc-EEEEEEeCCcccHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhc
Q 007817 196 FCVIPIVGMAGAGKTMLAREVYNDRAVQNFKFD-VKAWVSVSDDFDVLRISRALLESITSTNCDFKTLNEVQVKLRIIVD 274 (588)
Q Consensus 196 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~~f~-~~~wv~v~~~~~~~~~~~~il~~l~~~~~~~~~~~~l~~~l~~~l~ 274 (588)
...+.|+|++|+|||+|++.+++..... +.. .++|++. .++...+...+... ..+. +.+.+.
T Consensus 130 ~n~l~lyG~~G~GKTHLl~ai~~~l~~~--~~~~~v~yi~~------~~f~~~~~~~~~~~-----~~~~----f~~~~~ 192 (440)
T PRK14088 130 YNPLFIYGGVGLGKTHLLQSIGNYVVQN--EPDLRVMYITS------EKFLNDLVDSMKEG-----KLNE----FREKYR 192 (440)
T ss_pred CCeEEEEcCCCCcHHHHHHHHHHHHHHh--CCCCeEEEEEH------HHHHHHHHHHHhcc-----cHHH----HHHHHH
Confidence 3459999999999999999999976432 222 4556654 34555565555321 2222 223333
Q ss_pred CCceeEEeccccccC-hhHH-HHhhcccCC-CCCCcEEEEeec-chhhhhh--------ccccceeeCCCCCHHHHHHHH
Q 007817 275 GKKFLLVLDDVWNEN-YNLW-EILKAPFMA-GARNSKIIVTTC-HSNVASM--------MGSVEHYNLKLLSDEYCWSVF 342 (588)
Q Consensus 275 ~k~~LLVlDdv~~~~-~~~~-~~l~~~l~~-~~~gs~ilvTTR-~~~v~~~--------~~~~~~~~l~~L~~~ea~~Lf 342 (588)
.+.-+|+|||++... ...+ +.+...+.. ...|..||+||. .+.-... +.....+.+++.+.+.-..++
T Consensus 193 ~~~dvLlIDDi~~l~~~~~~q~elf~~~n~l~~~~k~iIitsd~~p~~l~~l~~rL~SR~~~gl~v~i~~pd~e~r~~IL 272 (440)
T PRK14088 193 KKVDVLLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDEETRKKIA 272 (440)
T ss_pred hcCCEEEEechhhhcCcHHHHHHHHHHHHHHHHcCCeEEEECCCCHHHHHHHHHHHhhHHhcCceEeeCCCCHHHHHHHH
Confidence 456689999996421 1111 222222211 122456888874 3322211 223457899999999999999
Q ss_pred HHhhcCCCCCCCChhHHHHHHHHHHHhCCCchHHHH
Q 007817 343 VKHAFERRDAGAHQFSKLFRKKIVAKCGGLPLAVST 378 (588)
Q Consensus 343 ~~~a~~~~~~~~~~~~~~i~~~I~~~c~GlPLai~~ 378 (588)
.+.+..... .. ..++..-|++.+.|..-.+.-
T Consensus 273 ~~~~~~~~~-~l---~~ev~~~Ia~~~~~~~R~L~g 304 (440)
T PRK14088 273 RKMLEIEHG-EL---PEEVLNFVAENVDDNLRRLRG 304 (440)
T ss_pred HHHHHhcCC-CC---CHHHHHHHHhccccCHHHHHH
Confidence 988743221 11 234456688887776544433
No 108
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=97.89 E-value=0.00077 Score=64.09 Aligned_cols=180 Identities=17% Similarity=0.218 Sum_probs=108.4
Q ss_pred CeEEEEEEccCCCcHHHHHHHHHcccccccccccEEEEEEeC-CcccHHHHHHHHHHHhcCCCCCCCCH----HHHHHHH
Q 007817 195 NFCVIPIVGMAGAGKTMLAREVYNDRAVQNFKFDVKAWVSVS-DDFDVLRISRALLESITSTNCDFKTL----NEVQVKL 269 (588)
Q Consensus 195 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~wv~v~-~~~~~~~~~~~il~~l~~~~~~~~~~----~~l~~~l 269 (588)
+..++.++|.-|+|||.+++.+........ ... |.+. ...+...+...|+..+.... ..+. +.....|
T Consensus 50 ~qg~~~vtGevGsGKTv~~Ral~~s~~~d~----~~~-v~i~~~~~s~~~~~~ai~~~l~~~p--~~~~~~~~e~~~~~L 122 (269)
T COG3267 50 GQGILAVTGEVGSGKTVLRRALLASLNEDQ----VAV-VVIDKPTLSDATLLEAIVADLESQP--KVNVNAVLEQIDREL 122 (269)
T ss_pred CCceEEEEecCCCchhHHHHHHHHhcCCCc----eEE-EEecCcchhHHHHHHHHHHHhccCc--cchhHHHHHHHHHHH
Confidence 346999999999999999996655443221 111 3333 33566777888888877632 2222 3333344
Q ss_pred HHHh-cCCc-eeEEeccccccChhHHHHhhcccCCCCCCc---EEEEeecch--------hhhhhccccce-eeCCCCCH
Q 007817 270 RIIV-DGKK-FLLVLDDVWNENYNLWEILKAPFMAGARNS---KIIVTTCHS--------NVASMMGSVEH-YNLKLLSD 335 (588)
Q Consensus 270 ~~~l-~~k~-~LLVlDdv~~~~~~~~~~l~~~l~~~~~gs---~ilvTTR~~--------~v~~~~~~~~~-~~l~~L~~ 335 (588)
.... ++++ ..+++|+.+.......+.++........++ +|+..-..+ .....-..... |++.|++.
T Consensus 123 ~al~~~g~r~v~l~vdEah~L~~~~le~Lrll~nl~~~~~~~l~ivL~Gqp~L~~~lr~~~l~e~~~R~~ir~~l~P~~~ 202 (269)
T COG3267 123 AALVKKGKRPVVLMVDEAHDLNDSALEALRLLTNLEEDSSKLLSIVLIGQPKLRPRLRLPVLRELEQRIDIRIELPPLTE 202 (269)
T ss_pred HHHHHhCCCCeEEeehhHhhhChhHHHHHHHHHhhcccccCceeeeecCCcccchhhchHHHHhhhheEEEEEecCCcCh
Confidence 4443 4666 899999998776666666554432221122 233333221 11111112234 99999999
Q ss_pred HHHHHHHHHhhcCCCCCCCChhHHHHHHHHHHHhCCCchHHHHhhhh
Q 007817 336 EYCWSVFVKHAFERRDAGAHQFSKLFRKKIVAKCGGLPLAVSTLGGL 382 (588)
Q Consensus 336 ~ea~~Lf~~~a~~~~~~~~~~~~~~i~~~I~~~c~GlPLai~~~~~~ 382 (588)
++...++..+..+...+ .+-........|.....|.|.+|..++..
T Consensus 203 ~~t~~yl~~~Le~a~~~-~~l~~~~a~~~i~~~sqg~P~lin~~~~~ 248 (269)
T COG3267 203 AETGLYLRHRLEGAGLP-EPLFSDDALLLIHEASQGIPRLINNLATL 248 (269)
T ss_pred HHHHHHHHHHHhccCCC-cccCChhHHHHHHHHhccchHHHHHHHHH
Confidence 99999988876544322 22223334567999999999999887643
No 109
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=97.87 E-value=0.00031 Score=74.47 Aligned_cols=134 Identities=18% Similarity=0.130 Sum_probs=77.7
Q ss_pred eEEEEEEccCCCcHHHHHHHHHcccccccccccEEEEEEeCCcccHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhcC
Q 007817 196 FCVIPIVGMAGAGKTMLAREVYNDRAVQNFKFDVKAWVSVSDDFDVLRISRALLESITSTNCDFKTLNEVQVKLRIIVDG 275 (588)
Q Consensus 196 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~il~~l~~~~~~~~~~~~l~~~l~~~l~~ 275 (588)
..-+.|+|+.|+|||+|++.+++.....+ ..+++++. ..+...+...+... .. ..++..+.
T Consensus 141 ~npl~L~G~~G~GKTHLl~Ai~~~l~~~~---~~v~yi~~------~~f~~~~~~~l~~~-----~~----~~f~~~~~- 201 (445)
T PRK12422 141 FNPIYLFGPEGSGKTHLMQAAVHALRESG---GKILYVRS------ELFTEHLVSAIRSG-----EM----QRFRQFYR- 201 (445)
T ss_pred CceEEEEcCCCCCHHHHHHHHHHHHHHcC---CCEEEeeH------HHHHHHHHHHHhcc-----hH----HHHHHHcc-
Confidence 35688999999999999999998764321 22345543 23444555544321 11 12333333
Q ss_pred CceeEEeccccccChhH--HHHhhcccCC-CCCCcEEEEeecch-hh--------hhhccccceeeCCCCCHHHHHHHHH
Q 007817 276 KKFLLVLDDVWNENYNL--WEILKAPFMA-GARNSKIIVTTCHS-NV--------ASMMGSVEHYNLKLLSDEYCWSVFV 343 (588)
Q Consensus 276 k~~LLVlDdv~~~~~~~--~~~l~~~l~~-~~~gs~ilvTTR~~-~v--------~~~~~~~~~~~l~~L~~~ea~~Lf~ 343 (588)
..-+|++||+....... .+.+...+.. ...|..||+||... .. ...+.....+.+.+++.++-..++.
T Consensus 202 ~~dvLiIDDiq~l~~k~~~qeelf~l~N~l~~~~k~IIlts~~~p~~l~~l~~rL~SR~~~Gl~~~l~~pd~e~r~~iL~ 281 (445)
T PRK12422 202 NVDALFIEDIEVFSGKGATQEEFFHTFNSLHTEGKLIVISSTCAPQDLKAMEERLISRFEWGIAIPLHPLTKEGLRSFLE 281 (445)
T ss_pred cCCEEEEcchhhhcCChhhHHHHHHHHHHHHHCCCcEEEecCCCHHHHhhhHHHHHhhhcCCeEEecCCCCHHHHHHHHH
Confidence 35588999986532211 1222222211 11355788888542 21 1112234678999999999999998
Q ss_pred HhhcC
Q 007817 344 KHAFE 348 (588)
Q Consensus 344 ~~a~~ 348 (588)
+.+-.
T Consensus 282 ~k~~~ 286 (445)
T PRK12422 282 RKAEA 286 (445)
T ss_pred HHHHH
Confidence 87743
No 110
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=97.83 E-value=8e-05 Score=85.77 Aligned_cols=157 Identities=13% Similarity=0.118 Sum_probs=86.0
Q ss_pred CceeechhhHHHHHHHHhcCCCCCCCCeEEEEEEccCCCcHHHHHHHHHccccccc---ccccEEEE-EEeCCcccHHHH
Q 007817 169 RAVYGRDEDKARMLEMVLSDDPTTDANFCVIPIVGMAGAGKTMLAREVYNDRAVQN---FKFDVKAW-VSVSDDFDVLRI 244 (588)
Q Consensus 169 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~---~~f~~~~w-v~v~~~~~~~~~ 244 (588)
..++||+.++.++++.|.... ...+.++|++|+|||+||+.+.+...... ......+| ++++ .+
T Consensus 173 ~~~igr~~ei~~~~~~l~r~~------~~n~lL~G~pGvGKT~l~~~la~~i~~~~~p~~l~~~~~~~l~~~------~l 240 (852)
T TIGR03346 173 DPVIGRDEEIRRTIQVLSRRT------KNNPVLIGEPGVGKTAIVEGLAQRIVNGDVPESLKNKRLLALDMG------AL 240 (852)
T ss_pred CcCCCcHHHHHHHHHHHhcCC------CCceEEEcCCCCCHHHHHHHHHHHHhccCCchhhcCCeEEEeeHH------HH
Confidence 358999999999999996543 23456899999999999999888643211 00122232 2211 11
Q ss_pred HHHHHHHhcCCCCCCCCHHH-HHHHHHHHhc-CCceeEEeccccccC-----h--hHHHHhhcccCCCCCCcEEEEeecc
Q 007817 245 SRALLESITSTNCDFKTLNE-VQVKLRIIVD-GKKFLLVLDDVWNEN-----Y--NLWEILKAPFMAGARNSKIIVTTCH 315 (588)
Q Consensus 245 ~~~il~~l~~~~~~~~~~~~-l~~~l~~~l~-~k~~LLVlDdv~~~~-----~--~~~~~l~~~l~~~~~gs~ilvTTR~ 315 (588)
+. +.. ...+.+. +...+...-+ +++.+|++|+++.-. . .....+..+.... ..-++|-+|..
T Consensus 241 ----~a---~~~-~~g~~e~~l~~~l~~~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~~~Lk~~l~~-g~i~~IgaTt~ 311 (852)
T TIGR03346 241 ----IA---GAK-YRGEFEERLKAVLNEVTKSEGQIILFIDELHTLVGAGKAEGAMDAGNMLKPALAR-GELHCIGATTL 311 (852)
T ss_pred ----hh---cch-hhhhHHHHHHHHHHHHHhcCCCeEEEeccHHHhhcCCCCcchhHHHHHhchhhhc-CceEEEEeCcH
Confidence 10 000 0112222 2222222222 468999999996421 0 1111222222222 23455655554
Q ss_pred hhhhhh-------ccccceeeCCCCCHHHHHHHHHHhh
Q 007817 316 SNVASM-------MGSVEHYNLKLLSDEYCWSVFVKHA 346 (588)
Q Consensus 316 ~~v~~~-------~~~~~~~~l~~L~~~ea~~Lf~~~a 346 (588)
++.... ......+.+...+.++...++....
T Consensus 312 ~e~r~~~~~d~al~rRf~~i~v~~p~~~~~~~iL~~~~ 349 (852)
T TIGR03346 312 DEYRKYIEKDAALERRFQPVFVDEPTVEDTISILRGLK 349 (852)
T ss_pred HHHHHHhhcCHHHHhcCCEEEeCCCCHHHHHHHHHHHH
Confidence 443221 1233568899999999999887653
No 111
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=97.81 E-value=0.00048 Score=73.76 Aligned_cols=162 Identities=16% Similarity=0.105 Sum_probs=93.0
Q ss_pred eEEEEEEccCCCcHHHHHHHHHcccccccccccEEEEEEeCCcccHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhcC
Q 007817 196 FCVIPIVGMAGAGKTMLAREVYNDRAVQNFKFDVKAWVSVSDDFDVLRISRALLESITSTNCDFKTLNEVQVKLRIIVDG 275 (588)
Q Consensus 196 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~il~~l~~~~~~~~~~~~l~~~l~~~l~~ 275 (588)
...+.|+|++|+|||+|++.+++...... .-..+++++.. ++...+...+.. ...+. +.+.++
T Consensus 148 ~~~l~l~G~~G~GKThL~~ai~~~~~~~~-~~~~v~yi~~~------~~~~~~~~~~~~-----~~~~~----~~~~~~- 210 (450)
T PRK00149 148 YNPLFIYGGVGLGKTHLLHAIGNYILEKN-PNAKVVYVTSE------KFTNDFVNALRN-----NTMEE----FKEKYR- 210 (450)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHhC-CCCeEEEEEHH------HHHHHHHHHHHc-----CcHHH----HHHHHh-
Confidence 35689999999999999999999765421 12234555543 233444444421 12222 223333
Q ss_pred CceeEEeccccccChh--HHHHhhcccCC-CCCCcEEEEeecchh-h--------hhhccccceeeCCCCCHHHHHHHHH
Q 007817 276 KKFLLVLDDVWNENYN--LWEILKAPFMA-GARNSKIIVTTCHSN-V--------ASMMGSVEHYNLKLLSDEYCWSVFV 343 (588)
Q Consensus 276 k~~LLVlDdv~~~~~~--~~~~l~~~l~~-~~~gs~ilvTTR~~~-v--------~~~~~~~~~~~l~~L~~~ea~~Lf~ 343 (588)
+.-+|+|||++..... ..+.+...+.. ...|..||+||.... . ...+.....+++++.+.++-..++.
T Consensus 211 ~~dlLiiDDi~~l~~~~~~~~~l~~~~n~l~~~~~~iiits~~~p~~l~~l~~~l~SRl~~gl~v~i~~pd~~~r~~il~ 290 (450)
T PRK00149 211 SVDVLLIDDIQFLAGKERTQEEFFHTFNALHEAGKQIVLTSDRPPKELPGLEERLRSRFEWGLTVDIEPPDLETRIAILK 290 (450)
T ss_pred cCCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCcEEEECCCCHHHHHHHHHHHHhHhcCCeeEEecCCCHHHHHHHHH
Confidence 3558999999643211 11223222211 112455788776531 1 1122334579999999999999999
Q ss_pred HhhcCCCCCCCChhHHHHHHHHHHHhCCCchHHHH
Q 007817 344 KHAFERRDAGAHQFSKLFRKKIVAKCGGLPLAVST 378 (588)
Q Consensus 344 ~~a~~~~~~~~~~~~~~i~~~I~~~c~GlPLai~~ 378 (588)
+.+...+. . ...++..-|++.+.|..-.+.-
T Consensus 291 ~~~~~~~~-~---l~~e~l~~ia~~~~~~~R~l~~ 321 (450)
T PRK00149 291 KKAEEEGI-D---LPDEVLEFIAKNITSNVRELEG 321 (450)
T ss_pred HHHHHcCC-C---CCHHHHHHHHcCcCCCHHHHHH
Confidence 98743211 1 2234456788888887665443
No 112
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=97.79 E-value=0.00049 Score=74.55 Aligned_cols=159 Identities=14% Similarity=0.062 Sum_probs=90.1
Q ss_pred EEEEEEccCCCcHHHHHHHHHcccccccccccEEEEEEeCCcccHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhcCC
Q 007817 197 CVIPIVGMAGAGKTMLAREVYNDRAVQNFKFDVKAWVSVSDDFDVLRISRALLESITSTNCDFKTLNEVQVKLRIIVDGK 276 (588)
Q Consensus 197 ~vv~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~il~~l~~~~~~~~~~~~l~~~l~~~l~~k 276 (588)
..+.|+|..|+|||.|++.+++...... .-..+++++. .++..++...+.. ...+. +++.+..
T Consensus 315 NpL~LyG~sGsGKTHLL~AIa~~a~~~~-~g~~V~Yita------eef~~el~~al~~-----~~~~~----f~~~y~~- 377 (617)
T PRK14086 315 NPLFIYGESGLGKTHLLHAIGHYARRLY-PGTRVRYVSS------EEFTNEFINSIRD-----GKGDS----FRRRYRE- 377 (617)
T ss_pred CcEEEECCCCCCHHHHHHHHHHHHHHhC-CCCeEEEeeH------HHHHHHHHHHHHh-----ccHHH----HHHHhhc-
Confidence 3489999999999999999999754321 1123445544 3344444444321 11222 2233332
Q ss_pred ceeEEeccccccCh-hHHH-HhhcccCC-CCCCcEEEEeecch---------hhhhhccccceeeCCCCCHHHHHHHHHH
Q 007817 277 KFLLVLDDVWNENY-NLWE-ILKAPFMA-GARNSKIIVTTCHS---------NVASMMGSVEHYNLKLLSDEYCWSVFVK 344 (588)
Q Consensus 277 ~~LLVlDdv~~~~~-~~~~-~l~~~l~~-~~~gs~ilvTTR~~---------~v~~~~~~~~~~~l~~L~~~ea~~Lf~~ 344 (588)
.=+|+|||+..... ..|. .+...+.. ...|..|||||... .+...+...-++.|.+.+.+.-..++.+
T Consensus 378 ~DLLlIDDIq~l~gke~tqeeLF~l~N~l~e~gk~IIITSd~~P~eL~~l~~rL~SRf~~GLvv~I~~PD~EtR~aIL~k 457 (617)
T PRK14086 378 MDILLVDDIQFLEDKESTQEEFFHTFNTLHNANKQIVLSSDRPPKQLVTLEDRLRNRFEWGLITDVQPPELETRIAILRK 457 (617)
T ss_pred CCEEEEehhccccCCHHHHHHHHHHHHHHHhcCCCEEEecCCChHhhhhccHHHHhhhhcCceEEcCCCCHHHHHHHHHH
Confidence 35899999965321 2222 22222221 12356688888753 1222233556899999999999999998
Q ss_pred hhcCCCCCCCChhHHHHHHHHHHHhCCCchHH
Q 007817 345 HAFERRDAGAHQFSKLFRKKIVAKCGGLPLAV 376 (588)
Q Consensus 345 ~a~~~~~~~~~~~~~~i~~~I~~~c~GlPLai 376 (588)
++...+. .. -.++..-|++.+.+..-.|
T Consensus 458 ka~~r~l-~l---~~eVi~yLa~r~~rnvR~L 485 (617)
T PRK14086 458 KAVQEQL-NA---PPEVLEFIASRISRNIREL 485 (617)
T ss_pred HHHhcCC-CC---CHHHHHHHHHhccCCHHHH
Confidence 8744322 12 2344555666666554443
No 113
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.76 E-value=0.00015 Score=79.55 Aligned_cols=52 Identities=12% Similarity=0.142 Sum_probs=41.2
Q ss_pred CCceeechhhHHHHHHHHhcCCCCCCCCeEEEEEEccCCCcHHHHHHHHHccc
Q 007817 168 ERAVYGRDEDKARMLEMVLSDDPTTDANFCVIPIVGMAGAGKTMLAREVYNDR 220 (588)
Q Consensus 168 ~~~~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~ 220 (588)
-.+++|-+..++++..++..... ......++.|+|++|+||||+++.++...
T Consensus 83 ldel~~~~~ki~~l~~~l~~~~~-~~~~~~illL~GP~GsGKTTl~~~la~~l 134 (637)
T TIGR00602 83 QHELAVHKKKIEEVETWLKAQVL-ENAPKRILLITGPSGCGKSTTIKILSKEL 134 (637)
T ss_pred HHHhcCcHHHHHHHHHHHHhccc-ccCCCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 35689999999999999875432 12233589999999999999999999854
No 114
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=97.75 E-value=0.00019 Score=62.98 Aligned_cols=88 Identities=19% Similarity=0.072 Sum_probs=48.0
Q ss_pred EEEEEEccCCCcHHHHHHHHHcccccccccccEEEEEEeCCcccHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhcCC
Q 007817 197 CVIPIVGMAGAGKTMLAREVYNDRAVQNFKFDVKAWVSVSDDFDVLRISRALLESITSTNCDFKTLNEVQVKLRIIVDGK 276 (588)
Q Consensus 197 ~vv~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~il~~l~~~~~~~~~~~~l~~~l~~~l~~k 276 (588)
..+.|+|++|+||||+++.+++..... ...+++++.+........... ...................+....+..
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~~~~~---~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALARELGPP---GGGVIYIDGEDILEEVLDQLL--LIIVGGKKASGSGELRLRLALALARKL 77 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhccCCC---CCCEEEECCEEccccCHHHHH--hhhhhccCCCCCHHHHHHHHHHHHHhc
Confidence 578999999999999999999865432 123555555443322222111 111111111222222233333444433
Q ss_pred -ceeEEeccccccC
Q 007817 277 -KFLLVLDDVWNEN 289 (588)
Q Consensus 277 -~~LLVlDdv~~~~ 289 (588)
..+|++|++....
T Consensus 78 ~~~viiiDei~~~~ 91 (148)
T smart00382 78 KPDVLILDEITSLL 91 (148)
T ss_pred CCCEEEEECCcccC
Confidence 4999999997643
No 115
>PRK10865 protein disaggregation chaperone; Provisional
Probab=97.72 E-value=0.0005 Score=79.00 Aligned_cols=156 Identities=13% Similarity=0.113 Sum_probs=85.2
Q ss_pred CceeechhhHHHHHHHHhcCCCCCCCCeEEEEEEccCCCcHHHHHHHHHccccccc---ccccEEE-EEEeCCcccHHHH
Q 007817 169 RAVYGRDEDKARMLEMVLSDDPTTDANFCVIPIVGMAGAGKTMLAREVYNDRAVQN---FKFDVKA-WVSVSDDFDVLRI 244 (588)
Q Consensus 169 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~---~~f~~~~-wv~v~~~~~~~~~ 244 (588)
..++||+.++.++++.|.... ...+.++|++|+|||+||+.+........ ......+ +++++.-
T Consensus 178 ~~vigr~~ei~~~i~iL~r~~------~~n~lL~G~pGvGKT~l~~~la~~i~~~~vp~~l~~~~~~~l~l~~l------ 245 (857)
T PRK10865 178 DPVIGRDEEIRRTIQVLQRRT------KNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMGAL------ 245 (857)
T ss_pred CcCCCCHHHHHHHHHHHhcCC------cCceEEECCCCCCHHHHHHHHHHHhhcCCCchhhCCCEEEEEehhhh------
Confidence 458999999999999997543 24566999999999999999988653211 0012222 2222211
Q ss_pred HHHHHHHhcCCCCCCCCHHH-HHHHHHHHh-cCCceeEEeccccccCh--------hHHHHhhcccCCCCCCcEEEEeec
Q 007817 245 SRALLESITSTNCDFKTLNE-VQVKLRIIV-DGKKFLLVLDDVWNENY--------NLWEILKAPFMAGARNSKIIVTTC 314 (588)
Q Consensus 245 ~~~il~~l~~~~~~~~~~~~-l~~~l~~~l-~~k~~LLVlDdv~~~~~--------~~~~~l~~~l~~~~~gs~ilvTTR 314 (588)
+. +.. .....++ +...+.+.. .+++.+|++|+++.-.. +.-+.+...+ .. ..-++|-+|.
T Consensus 246 ----~a---g~~-~~g~~e~~lk~~~~~~~~~~~~~ILfIDEih~l~~~~~~~~~~d~~~~lkp~l-~~-g~l~~IgaTt 315 (857)
T PRK10865 246 ----VA---GAK-YRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADGAMDAGNMLKPAL-AR-GELHCVGATT 315 (857)
T ss_pred ----hh---ccc-hhhhhHHHHHHHHHHHHHcCCCeEEEEecHHHhccCCCCccchhHHHHhcchh-hc-CCCeEEEcCC
Confidence 00 000 0111222 222222221 25689999999964321 1122232222 22 2346666665
Q ss_pred chhhhhhc-------cccceeeCCCCCHHHHHHHHHHhh
Q 007817 315 HSNVASMM-------GSVEHYNLKLLSDEYCWSVFVKHA 346 (588)
Q Consensus 315 ~~~v~~~~-------~~~~~~~l~~L~~~ea~~Lf~~~a 346 (588)
.++....+ .....+.+..-+.++...++....
T Consensus 316 ~~e~r~~~~~d~al~rRf~~i~v~eP~~~~~~~iL~~l~ 354 (857)
T PRK10865 316 LDEYRQYIEKDAALERRFQKVFVAEPSVEDTIAILRGLK 354 (857)
T ss_pred CHHHHHHhhhcHHHHhhCCEEEeCCCCHHHHHHHHHHHh
Confidence 55432211 123456777778899888886544
No 116
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=97.72 E-value=0.0012 Score=66.72 Aligned_cols=182 Identities=9% Similarity=0.083 Sum_probs=103.2
Q ss_pred hhHHHHHHHHhcCCCCCCCCeEEEEEEccCCCcHHHHHHHHHcccccccccccE---E--EEEEeCCcccHHHHHHHHHH
Q 007817 176 EDKARMLEMVLSDDPTTDANFCVIPIVGMAGAGKTMLAREVYNDRAVQNFKFDV---K--AWVSVSDDFDVLRISRALLE 250 (588)
Q Consensus 176 ~e~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~---~--~wv~v~~~~~~~~~~~~il~ 250 (588)
...+.+.+.+.... -...+.++|+.|+||+++|..+++..--.. ...+ . -|+..+..+|+.-+.
T Consensus 11 ~~~~~l~~~~~~~r-----l~HA~Lf~Gp~G~GK~~lA~~lA~~LlC~~-~~~~~~c~~c~~~~~g~HPD~~~i~----- 79 (319)
T PRK08769 11 RAYDQTVAALDAGR-----LGHGLLICGPEGLGKRAVALALAEHVLASG-PDPAAAQRTRQLIAAGTHPDLQLVS----- 79 (319)
T ss_pred HHHHHHHHHHHcCC-----cceeEeeECCCCCCHHHHHHHHHHHHhCCC-CCCCCcchHHHHHhcCCCCCEEEEe-----
Confidence 34556666665432 346788999999999999988876543211 0000 0 001001111100000
Q ss_pred HhcCCCC-----CCCCHHHHHHHHHHHh-----cCCceeEEeccccccChhHHHHhhcccCCCCCCcEEEEeecch-hhh
Q 007817 251 SITSTNC-----DFKTLNEVQVKLRIIV-----DGKKFLLVLDDVWNENYNLWEILKAPFMAGARNSKIIVTTCHS-NVA 319 (588)
Q Consensus 251 ~l~~~~~-----~~~~~~~l~~~l~~~l-----~~k~~LLVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTTR~~-~v~ 319 (588)
...... ..-.++++. .+.+.+ .+++=++|||++...+...-+.++..+.....++.+|++|.+. .+.
T Consensus 80 -~~p~~~~~k~~~~I~idqIR-~l~~~~~~~p~~g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~~~fiL~~~~~~~lL 157 (319)
T PRK08769 80 -FIPNRTGDKLRTEIVIEQVR-EISQKLALTPQYGIAQVVIVDPADAINRAACNALLKTLEEPSPGRYLWLISAQPARLP 157 (319)
T ss_pred -cCCCcccccccccccHHHHH-HHHHHHhhCcccCCcEEEEeccHhhhCHHHHHHHHHHhhCCCCCCeEEEEECChhhCc
Confidence 000000 001122222 222222 2456699999998887777788888777666677777777653 333
Q ss_pred hhc-cccceeeCCCCCHHHHHHHHHHhhcCCCCCCCChhHHHHHHHHHHHhCCCchHHHHhh
Q 007817 320 SMM-GSVEHYNLKLLSDEYCWSVFVKHAFERRDAGAHQFSKLFRKKIVAKCGGLPLAVSTLG 380 (588)
Q Consensus 320 ~~~-~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~i~~~I~~~c~GlPLai~~~~ 380 (588)
..+ .....+.+.+++.+++...+.... .. ...+..++..++|.|+....+.
T Consensus 158 pTIrSRCq~i~~~~~~~~~~~~~L~~~~------~~----~~~a~~~~~l~~G~p~~A~~~~ 209 (319)
T PRK08769 158 ATIRSRCQRLEFKLPPAHEALAWLLAQG------VS----ERAAQEALDAARGHPGLAAQWL 209 (319)
T ss_pred hHHHhhheEeeCCCcCHHHHHHHHHHcC------CC----hHHHHHHHHHcCCCHHHHHHHh
Confidence 332 245678999999999998887531 11 1114568999999999765543
No 117
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=97.71 E-value=0.00068 Score=61.70 Aligned_cols=138 Identities=14% Similarity=0.136 Sum_probs=78.4
Q ss_pred echhhHHHHHHHHhcCCCCCCCCeEEEEEEccCCCcHHHHHHHHHcccccccc-----------------cccEEEEEEe
Q 007817 173 GRDEDKARMLEMVLSDDPTTDANFCVIPIVGMAGAGKTMLAREVYNDRAVQNF-----------------KFDVKAWVSV 235 (588)
Q Consensus 173 GR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~-----------------~f~~~~wv~v 235 (588)
|-++..+.|.+.+.... -+..+.++|+.|+||+++|..+.+..--... ...-..|+.-
T Consensus 1 gq~~~~~~L~~~~~~~~-----l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~ 75 (162)
T PF13177_consen 1 GQEEIIELLKNLIKSGR-----LPHALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEEGNHPDFIIIKP 75 (162)
T ss_dssp S-HHHHHHHHHHHHCTC-------SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHTT-CTTEEEEET
T ss_pred CcHHHHHHHHHHHHcCC-----cceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHhccCcceEEEec
Confidence 44566777777776542 3457899999999999999888775432220 0111222221
Q ss_pred CCcccHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHh-----cCCceeEEeccccccChhHHHHhhcccCCCCCCcEEE
Q 007817 236 SDDFDVLRISRALLESITSTNCDFKTLNEVQVKLRIIV-----DGKKFLLVLDDVWNENYNLWEILKAPFMAGARNSKII 310 (588)
Q Consensus 236 ~~~~~~~~~~~~il~~l~~~~~~~~~~~~l~~~l~~~l-----~~k~~LLVlDdv~~~~~~~~~~l~~~l~~~~~gs~il 310 (588)
.... ..-..++.. .+...+ .++.=++||||++..+....+.|+..+.....++.+|
T Consensus 76 ~~~~------------------~~i~i~~ir-~i~~~~~~~~~~~~~KviiI~~ad~l~~~a~NaLLK~LEepp~~~~fi 136 (162)
T PF13177_consen 76 DKKK------------------KSIKIDQIR-EIIEFLSLSPSEGKYKVIIIDEADKLTEEAQNALLKTLEEPPENTYFI 136 (162)
T ss_dssp TTSS------------------SSBSHHHHH-HHHHHCTSS-TTSSSEEEEEETGGGS-HHHHHHHHHHHHSTTTTEEEE
T ss_pred cccc------------------chhhHHHHH-HHHHHHHHHHhcCCceEEEeehHhhhhHHHHHHHHHHhcCCCCCEEEE
Confidence 1110 011233333 233332 2345689999999888889999999988877889998
Q ss_pred Eeecchhh-hhh-ccccceeeCCCCC
Q 007817 311 VTTCHSNV-ASM-MGSVEHYNLKLLS 334 (588)
Q Consensus 311 vTTR~~~v-~~~-~~~~~~~~l~~L~ 334 (588)
++|.+..- ... ......+.+.+|+
T Consensus 137 L~t~~~~~il~TI~SRc~~i~~~~ls 162 (162)
T PF13177_consen 137 LITNNPSKILPTIRSRCQVIRFRPLS 162 (162)
T ss_dssp EEES-GGGS-HHHHTTSEEEEE----
T ss_pred EEECChHHChHHHHhhceEEecCCCC
Confidence 88877643 222 2233456666653
No 118
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=97.68 E-value=0.0025 Score=64.28 Aligned_cols=177 Identities=11% Similarity=0.007 Sum_probs=103.8
Q ss_pred hhHHHHHHHHhcCCCCCCCCeEEEEEEccCCCcHHHHHHHHHcccccccccccE-------EEEEEeCCcccHHHHHHHH
Q 007817 176 EDKARMLEMVLSDDPTTDANFCVIPIVGMAGAGKTMLAREVYNDRAVQNFKFDV-------KAWVSVSDDFDVLRISRAL 248 (588)
Q Consensus 176 ~e~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~-------~~wv~v~~~~~~~~~~~~i 248 (588)
...+++.+.+... .-...+.++|+.|+||+++|..+.+..--.. .-+. .-++..+..+|+..+
T Consensus 10 ~~~~~l~~~~~~~-----rl~hA~L~~G~~G~Gk~~lA~~~a~~llC~~-~~~~~Cg~C~sC~~~~~g~HPD~~~i---- 79 (319)
T PRK06090 10 PVWQNWKAGLDAG-----RIPGALLLQSDEGLGVESLVELFSRALLCQN-YQSEACGFCHSCELMQSGNHPDLHVI---- 79 (319)
T ss_pred HHHHHHHHHHHcC-----CcceeEeeECCCCCCHHHHHHHHHHHHcCCC-CCCCCCCCCHHHHHHHcCCCCCEEEE----
Confidence 3445566666443 2456889999999999999988866442211 0000 000000011110000
Q ss_pred HHHhcCCC-CCCCCHHHHHHHHHHHh-----cCCceeEEeccccccChhHHHHhhcccCCCCCCcEEEEeecch-hhhhh
Q 007817 249 LESITSTN-CDFKTLNEVQVKLRIIV-----DGKKFLLVLDDVWNENYNLWEILKAPFMAGARNSKIIVTTCHS-NVASM 321 (588)
Q Consensus 249 l~~l~~~~-~~~~~~~~l~~~l~~~l-----~~k~~LLVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTTR~~-~v~~~ 321 (588)
.... ...-.++++.. +.+.+ .++.=++|+|++...+....+.+...+.....++.+|++|.+. .+...
T Consensus 80 ----~p~~~~~~I~vdqiR~-l~~~~~~~~~~~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~lLpT 154 (319)
T PRK06090 80 ----KPEKEGKSITVEQIRQ-CNRLAQESSQLNGYRLFVIEPADAMNESASNALLKTLEEPAPNCLFLLVTHNQKRLLPT 154 (319)
T ss_pred ----ecCcCCCcCCHHHHHH-HHHHHhhCcccCCceEEEecchhhhCHHHHHHHHHHhcCCCCCeEEEEEECChhhChHH
Confidence 0000 01112333322 22222 2445589999998888888899988888776777777766654 44433
Q ss_pred c-cccceeeCCCCCHHHHHHHHHHhhcCCCCCCCChhHHHHHHHHHHHhCCCchHHHHh
Q 007817 322 M-GSVEHYNLKLLSDEYCWSVFVKHAFERRDAGAHQFSKLFRKKIVAKCGGLPLAVSTL 379 (588)
Q Consensus 322 ~-~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~i~~~I~~~c~GlPLai~~~ 379 (588)
+ +....+.+.+++.+++.+.+.... . . ....++..++|.|+....+
T Consensus 155 I~SRCq~~~~~~~~~~~~~~~L~~~~----~--~------~~~~~l~l~~G~p~~A~~~ 201 (319)
T PRK06090 155 IVSRCQQWVVTPPSTAQAMQWLKGQG----I--T------VPAYALKLNMGSPLKTLAM 201 (319)
T ss_pred HHhcceeEeCCCCCHHHHHHHHHHcC----C--c------hHHHHHHHcCCCHHHHHHH
Confidence 2 345689999999999999887542 0 1 1245789999999977655
No 119
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=97.65 E-value=0.00061 Score=63.49 Aligned_cols=103 Identities=17% Similarity=0.262 Sum_probs=65.2
Q ss_pred CceeechhhHHHHHHHHhcCCCCCCCCeEEEEEEccCCCcHHHHHHHHHcccccccccccEEEEEEeCCcccHHHHHHHH
Q 007817 169 RAVYGRDEDKARMLEMVLSDDPTTDANFCVIPIVGMAGAGKTMLAREVYNDRAVQNFKFDVKAWVSVSDDFDVLRISRAL 248 (588)
Q Consensus 169 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i 248 (588)
.++||-++-++++.-...+ ++.+-+.|.||+|+||||-+..+++..-... +-+.+.=.++|+.
T Consensus 27 ~dIVGNe~tv~rl~via~~------gnmP~liisGpPG~GKTTsi~~LAr~LLG~~-~ke~vLELNASde---------- 89 (333)
T KOG0991|consen 27 QDIVGNEDTVERLSVIAKE------GNMPNLIISGPPGTGKTTSILCLARELLGDS-YKEAVLELNASDE---------- 89 (333)
T ss_pred HHhhCCHHHHHHHHHHHHc------CCCCceEeeCCCCCchhhHHHHHHHHHhChh-hhhHhhhccCccc----------
Confidence 4689999999988877644 3567889999999999998888877654332 2233333333333
Q ss_pred HHHhcCCCCCCCCHHHHHHHHHHHhc-------CCceeEEeccccccChhHHHHhhcc
Q 007817 249 LESITSTNCDFKTLNEVQVKLRIIVD-------GKKFLLVLDDVWNENYNLWEILKAP 299 (588)
Q Consensus 249 l~~l~~~~~~~~~~~~l~~~l~~~l~-------~k~~LLVlDdv~~~~~~~~~~l~~~ 299 (588)
...+.....++.+-+ ++.=++|||..++.....-..+++.
T Consensus 90 -----------RGIDvVRn~IK~FAQ~kv~lp~grhKIiILDEADSMT~gAQQAlRRt 136 (333)
T KOG0991|consen 90 -----------RGIDVVRNKIKMFAQKKVTLPPGRHKIIILDEADSMTAGAQQALRRT 136 (333)
T ss_pred -----------cccHHHHHHHHHHHHhhccCCCCceeEEEeeccchhhhHHHHHHHHH
Confidence 223333444444332 4455789999977665544445444
No 120
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=97.64 E-value=0.004 Score=71.21 Aligned_cols=165 Identities=19% Similarity=0.129 Sum_probs=84.7
Q ss_pred CceeechhhHHHHHHHHhcCCCCCCCCeEEEEEEccCCCcHHHHHHHHHcccccccccccEEEEEEeCCcccHHHHHHHH
Q 007817 169 RAVYGRDEDKARMLEMVLSDDPTTDANFCVIPIVGMAGAGKTMLAREVYNDRAVQNFKFDVKAWVSVSDDFDVLRISRAL 248 (588)
Q Consensus 169 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i 248 (588)
..++|.+.-+++|.+++...........+++.++|++|+|||++|+.+++.... .|-. ++++...+..++..
T Consensus 320 ~~~~G~~~~k~~i~~~~~~~~~~~~~~~~~lll~GppG~GKT~lAk~iA~~l~~---~~~~---i~~~~~~~~~~i~g-- 391 (775)
T TIGR00763 320 EDHYGLKKVKERILEYLAVQKLRGKMKGPILCLVGPPGVGKTSLGKSIAKALNR---KFVR---FSLGGVRDEAEIRG-- 391 (775)
T ss_pred hhcCChHHHHHHHHHHHHHHHhhcCCCCceEEEECCCCCCHHHHHHHHHHHhcC---CeEE---EeCCCcccHHHHcC--
Confidence 357899999999888764321111123358999999999999999999986532 2211 22232222222110
Q ss_pred HHHhcCCCCCCCCHHHHHHHHHHHhcCCceeEEeccccccChh----HHHHhhcccC--------CC-------CCCcEE
Q 007817 249 LESITSTNCDFKTLNEVQVKLRIIVDGKKFLLVLDDVWNENYN----LWEILKAPFM--------AG-------ARNSKI 309 (588)
Q Consensus 249 l~~l~~~~~~~~~~~~l~~~l~~~l~~k~~LLVlDdv~~~~~~----~~~~l~~~l~--------~~-------~~gs~i 309 (588)
. .... .......+...+...- .++-+|+||.++..... .-..+...+. .. ..+.-+
T Consensus 392 --~-~~~~-~g~~~g~i~~~l~~~~-~~~~villDEidk~~~~~~~~~~~aLl~~ld~~~~~~f~d~~~~~~~d~s~v~~ 466 (775)
T TIGR00763 392 --H-RRTY-VGAMPGRIIQGLKKAK-TKNPLFLLDEIDKIGSSFRGDPASALLEVLDPEQNNAFSDHYLDVPFDLSKVIF 466 (775)
T ss_pred --C-CCce-eCCCCchHHHHHHHhC-cCCCEEEEechhhcCCccCCCHHHHHHHhcCHHhcCccccccCCceeccCCEEE
Confidence 0 0000 0111122233333332 23347899998543211 1122222211 11 022334
Q ss_pred EEeecchhh-hhh-ccccceeeCCCCCHHHHHHHHHHhh
Q 007817 310 IVTTCHSNV-ASM-MGSVEHYNLKLLSDEYCWSVFVKHA 346 (588)
Q Consensus 310 lvTTR~~~v-~~~-~~~~~~~~l~~L~~~ea~~Lf~~~a 346 (588)
|.||..... ... ......+++.+++.++-.+++..+.
T Consensus 467 I~TtN~~~~i~~~L~~R~~vi~~~~~~~~e~~~I~~~~l 505 (775)
T TIGR00763 467 IATANSIDTIPRPLLDRMEVIELSGYTEEEKLEIAKKYL 505 (775)
T ss_pred EEecCCchhCCHHHhCCeeEEecCCCCHHHHHHHHHHHH
Confidence 455543321 111 2234679999999999888887654
No 121
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=97.63 E-value=0.001 Score=69.43 Aligned_cols=179 Identities=16% Similarity=0.135 Sum_probs=96.3
Q ss_pred CceeechhhHHHHHHHHhcCCC-------CCCCCeEEEEEEccCCCcHHHHHHHHHcccccccccccEEEEEEeCCcccH
Q 007817 169 RAVYGRDEDKARMLEMVLSDDP-------TTDANFCVIPIVGMAGAGKTMLAREVYNDRAVQNFKFDVKAWVSVSDDFDV 241 (588)
Q Consensus 169 ~~~vGR~~e~~~l~~~L~~~~~-------~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~wv~v~~~~~~ 241 (588)
.++.|-+..+++|.+.+..+-. .+-..++-+.++|++|+|||+||+.+++.... .| +.+..
T Consensus 145 ~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~l~~---~f-----i~i~~---- 212 (398)
T PTZ00454 145 SDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHHTTA---TF-----IRVVG---- 212 (398)
T ss_pred HHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCC---CE-----EEEeh----
Confidence 4578988888888876642110 01234567889999999999999999986432 22 11111
Q ss_pred HHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhcCCceeEEecccccc-----------Chh---HHHHhhcccCC--CCC
Q 007817 242 LRISRALLESITSTNCDFKTLNEVQVKLRIIVDGKKFLLVLDDVWNE-----------NYN---LWEILKAPFMA--GAR 305 (588)
Q Consensus 242 ~~~~~~il~~l~~~~~~~~~~~~l~~~l~~~l~~k~~LLVlDdv~~~-----------~~~---~~~~l~~~l~~--~~~ 305 (588)
..+ .....+ .....+...+.......+.+|+||++... +.. .+..+...+.. ...
T Consensus 213 s~l----~~k~~g-----e~~~~lr~lf~~A~~~~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~ld~~~~~~ 283 (398)
T PTZ00454 213 SEF----VQKYLG-----EGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGADREVQRILLELLNQMDGFDQTT 283 (398)
T ss_pred HHH----HHHhcc-----hhHHHHHHHHHHHHhcCCeEEEEECHhhhccccccccCCccHHHHHHHHHHHHHhhccCCCC
Confidence 111 111111 11112222233333567899999997531 001 11222222221 224
Q ss_pred CcEEEEeecchhhhhh--cc---ccceeeCCCCCHHHHHHHHHHhhcCCCCCCCChhHHHHHHHHHHHhCCCc
Q 007817 306 NSKIIVTTCHSNVASM--MG---SVEHYNLKLLSDEYCWSVFVKHAFERRDAGAHQFSKLFRKKIVAKCGGLP 373 (588)
Q Consensus 306 gs~ilvTTR~~~v~~~--~~---~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~i~~~I~~~c~GlP 373 (588)
+..||.||...+.... .. -...++++..+.++...+|..+...... ...-.+ .++++.+.|.-
T Consensus 284 ~v~VI~aTN~~d~LDpAllR~GRfd~~I~~~~P~~~~R~~Il~~~~~~~~l-~~dvd~----~~la~~t~g~s 351 (398)
T PTZ00454 284 NVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLIFQTITSKMNL-SEEVDL----EDFVSRPEKIS 351 (398)
T ss_pred CEEEEEecCCchhCCHHHcCCCcccEEEEeCCcCHHHHHHHHHHHHhcCCC-CcccCH----HHHHHHcCCCC
Confidence 5678888876543322 11 2356889989999888888866532211 112222 34666666553
No 122
>PRK10536 hypothetical protein; Provisional
Probab=97.62 E-value=0.0006 Score=65.80 Aligned_cols=135 Identities=17% Similarity=0.209 Sum_probs=75.7
Q ss_pred CceeechhhHHHHHHHHhcCCCCCCCCeEEEEEEccCCCcHHHHHHHHHcccccccccccEEEEEE----eCC-----cc
Q 007817 169 RAVYGRDEDKARMLEMVLSDDPTTDANFCVIPIVGMAGAGKTMLAREVYNDRAVQNFKFDVKAWVS----VSD-----DF 239 (588)
Q Consensus 169 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~wv~----v~~-----~~ 239 (588)
..+.+|......+..++... .++.+.|++|.|||+||..+..+.-..+ .|+.++-.. +++ +.
T Consensus 55 ~~i~p~n~~Q~~~l~al~~~--------~lV~i~G~aGTGKT~La~a~a~~~l~~~-~~~kIiI~RP~v~~ge~LGfLPG 125 (262)
T PRK10536 55 SPILARNEAQAHYLKAIESK--------QLIFATGEAGCGKTWISAAKAAEALIHK-DVDRIIVTRPVLQADEDLGFLPG 125 (262)
T ss_pred ccccCCCHHHHHHHHHHhcC--------CeEEEECCCCCCHHHHHHHHHHHHHhcC-CeeEEEEeCCCCCchhhhCcCCC
Confidence 34667888889999988542 4899999999999999999887533223 444443321 111 01
Q ss_pred cHHHH----HHHHHHHhcCCCCCCCCHHHHHH--------HHHHHhcCCce---eEEeccccccChhHHHHhhcccCCCC
Q 007817 240 DVLRI----SRALLESITSTNCDFKTLNEVQV--------KLRIIVDGKKF---LLVLDDVWNENYNLWEILKAPFMAGA 304 (588)
Q Consensus 240 ~~~~~----~~~il~~l~~~~~~~~~~~~l~~--------~l~~~l~~k~~---LLVlDdv~~~~~~~~~~l~~~l~~~~ 304 (588)
+..+- +.-+...+..-. +....+.+.. .=-.+++|+.+ +||+|++.+.+......+. ...+
T Consensus 126 ~~~eK~~p~~~pi~D~L~~~~-~~~~~~~~~~~~~~~Iei~~l~ymRGrtl~~~~vIvDEaqn~~~~~~k~~l---tR~g 201 (262)
T PRK10536 126 DIAEKFAPYFRPVYDVLVRRL-GASFMQYCLRPEIGKVEIAPFAYMRGRTFENAVVILDEAQNVTAAQMKMFL---TRLG 201 (262)
T ss_pred CHHHHHHHHHHHHHHHHHHHh-ChHHHHHHHHhccCcEEEecHHHhcCCcccCCEEEEechhcCCHHHHHHHH---hhcC
Confidence 11111 111222221100 0011111100 01135677665 9999999887765555444 3445
Q ss_pred CCcEEEEeecch
Q 007817 305 RNSKIIVTTCHS 316 (588)
Q Consensus 305 ~gs~ilvTTR~~ 316 (588)
.+|++|+|--..
T Consensus 202 ~~sk~v~~GD~~ 213 (262)
T PRK10536 202 ENVTVIVNGDIT 213 (262)
T ss_pred CCCEEEEeCChh
Confidence 789999987543
No 123
>PRK08116 hypothetical protein; Validated
Probab=97.62 E-value=0.00025 Score=70.19 Aligned_cols=103 Identities=22% Similarity=0.215 Sum_probs=58.7
Q ss_pred EEEEEEccCCCcHHHHHHHHHcccccccccccEEEEEEeCCcccHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhcCC
Q 007817 197 CVIPIVGMAGAGKTMLAREVYNDRAVQNFKFDVKAWVSVSDDFDVLRISRALLESITSTNCDFKTLNEVQVKLRIIVDGK 276 (588)
Q Consensus 197 ~vv~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~il~~l~~~~~~~~~~~~l~~~l~~~l~~k 276 (588)
..+.|+|.+|+|||.||..+++....++ ..++++++ .+++..+........ ..+..+ +.+.+.+-
T Consensus 115 ~gl~l~G~~GtGKThLa~aia~~l~~~~---~~v~~~~~------~~ll~~i~~~~~~~~--~~~~~~----~~~~l~~~ 179 (268)
T PRK08116 115 VGLLLWGSVGTGKTYLAACIANELIEKG---VPVIFVNF------PQLLNRIKSTYKSSG--KEDENE----IIRSLVNA 179 (268)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHcC---CeEEEEEH------HHHHHHHHHHHhccc--cccHHH----HHHHhcCC
Confidence 3588999999999999999999765432 23455553 344555544443211 112222 22333333
Q ss_pred ceeEEeccccccChhHHHH--hhcccCC-CCCCcEEEEeecc
Q 007817 277 KFLLVLDDVWNENYNLWEI--LKAPFMA-GARNSKIIVTTCH 315 (588)
Q Consensus 277 ~~LLVlDdv~~~~~~~~~~--l~~~l~~-~~~gs~ilvTTR~ 315 (588)
. ||||||+.......|.. +...+.. -..+..+|+||..
T Consensus 180 d-lLviDDlg~e~~t~~~~~~l~~iin~r~~~~~~~IiTsN~ 220 (268)
T PRK08116 180 D-LLILDDLGAERDTEWAREKVYNIIDSRYRKGLPTIVTTNL 220 (268)
T ss_pred C-EEEEecccCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCC
Confidence 3 89999995443334433 3332222 1245668999854
No 124
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=97.60 E-value=0.004 Score=63.03 Aligned_cols=176 Identities=9% Similarity=0.016 Sum_probs=103.0
Q ss_pred hHHHHHHHHhcCCCCCCCCeEEEEEEccCCCcHHHHHHHHHccccccccccc---E-----EEEEEeCCcccHHHHHHHH
Q 007817 177 DKARMLEMVLSDDPTTDANFCVIPIVGMAGAGKTMLAREVYNDRAVQNFKFD---V-----KAWVSVSDDFDVLRISRAL 248 (588)
Q Consensus 177 e~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~~f~---~-----~~wv~v~~~~~~~~~~~~i 248 (588)
..+.+.+.+.... -.....++|+.|+||+++|..++...--.. ... | +-++..+..+|+..+
T Consensus 10 ~~~~l~~~~~~~r-----l~HA~Lf~G~~G~GK~~lA~~~A~~llC~~-~~~~~~Cg~C~sC~~~~~g~HPD~~~i---- 79 (325)
T PRK06871 10 TYQQITQAFQQGL-----GHHALLFKADSGLGTEQLIRALAQWLMCQT-PQGDQPCGQCHSCHLFQAGNHPDFHIL---- 79 (325)
T ss_pred HHHHHHHHHHcCC-----cceeEEeECCCCCCHHHHHHHHHHHHcCCC-CCCCCCCCCCHHHHHHhcCCCCCEEEE----
Confidence 3455666665432 346788999999999999988876542211 000 0 000001111111100
Q ss_pred HHHhcCCCCCCCCHHHHHHHHHHHh-----cCCceeEEeccccccChhHHHHhhcccCCCCCCcEEEEeecch-hhhhh-
Q 007817 249 LESITSTNCDFKTLNEVQVKLRIIV-----DGKKFLLVLDDVWNENYNLWEILKAPFMAGARNSKIIVTTCHS-NVASM- 321 (588)
Q Consensus 249 l~~l~~~~~~~~~~~~l~~~l~~~l-----~~k~~LLVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTTR~~-~v~~~- 321 (588)
.......-.+++... +.+.+ .+++=++|+|+++..+....+.++..+.....++.+|++|.+. .+...
T Consensus 80 ----~p~~~~~I~id~iR~-l~~~~~~~~~~g~~KV~iI~~a~~m~~~AaNaLLKtLEEPp~~~~fiL~t~~~~~llpTI 154 (325)
T PRK06871 80 ----EPIDNKDIGVDQVRE-INEKVSQHAQQGGNKVVYIQGAERLTEAAANALLKTLEEPRPNTYFLLQADLSAALLPTI 154 (325)
T ss_pred ----ccccCCCCCHHHHHH-HHHHHhhccccCCceEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhCchHH
Confidence 000001112333322 22222 3556688899998888888888988888777777777777654 44433
Q ss_pred ccccceeeCCCCCHHHHHHHHHHhhcCCCCCCCChhHHHHHHHHHHHhCCCchHH
Q 007817 322 MGSVEHYNLKLLSDEYCWSVFVKHAFERRDAGAHQFSKLFRKKIVAKCGGLPLAV 376 (588)
Q Consensus 322 ~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~i~~~I~~~c~GlPLai 376 (588)
.+....+.+.++++++..+.+..... .... .+...+..++|.|+.+
T Consensus 155 ~SRC~~~~~~~~~~~~~~~~L~~~~~------~~~~---~~~~~~~l~~g~p~~A 200 (325)
T PRK06871 155 YSRCQTWLIHPPEEQQALDWLQAQSS------AEIS---EILTALRINYGRPLLA 200 (325)
T ss_pred HhhceEEeCCCCCHHHHHHHHHHHhc------cChH---HHHHHHHHcCCCHHHH
Confidence 23456899999999999988887541 1111 1445788999999644
No 125
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=97.59 E-value=0.00093 Score=68.92 Aligned_cols=152 Identities=16% Similarity=0.155 Sum_probs=87.4
Q ss_pred CeEEEEEEccCCCcHHHHHHHHHccccccccccc-EEEEEEeCCcccHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHh
Q 007817 195 NFCVIPIVGMAGAGKTMLAREVYNDRAVQNFKFD-VKAWVSVSDDFDVLRISRALLESITSTNCDFKTLNEVQVKLRIIV 273 (588)
Q Consensus 195 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~~f~-~~~wv~v~~~~~~~~~~~~il~~l~~~~~~~~~~~~l~~~l~~~l 273 (588)
....+.|+|..|.|||.|++.+.+...... .+ .+++++ ........+..+.. .-...+++..
T Consensus 112 ~~nplfi~G~~GlGKTHLl~Aign~~~~~~--~~a~v~y~~------se~f~~~~v~a~~~---------~~~~~Fk~~y 174 (408)
T COG0593 112 AYNPLFIYGGVGLGKTHLLQAIGNEALANG--PNARVVYLT------SEDFTNDFVKALRD---------NEMEKFKEKY 174 (408)
T ss_pred cCCcEEEECCCCCCHHHHHHHHHHHHHhhC--CCceEEecc------HHHHHHHHHHHHHh---------hhHHHHHHhh
Confidence 467899999999999999999999765432 22 233332 23344444444322 1123344444
Q ss_pred cCCceeEEeccccccCh-hHH-HHhhcccCC-CCCCcEEEEeecch---------hhhhhccccceeeCCCCCHHHHHHH
Q 007817 274 DGKKFLLVLDDVWNENY-NLW-EILKAPFMA-GARNSKIIVTTCHS---------NVASMMGSVEHYNLKLLSDEYCWSV 341 (588)
Q Consensus 274 ~~k~~LLVlDdv~~~~~-~~~-~~l~~~l~~-~~~gs~ilvTTR~~---------~v~~~~~~~~~~~l~~L~~~ea~~L 341 (588)
.-=++++||++.-.. +.| +.+...|.. ...|-.||+|++.. .+...+...-++.+.+.+.+....+
T Consensus 175 --~~dlllIDDiq~l~gk~~~qeefFh~FN~l~~~~kqIvltsdr~P~~l~~~~~rL~SR~~~Gl~~~I~~Pd~e~r~ai 252 (408)
T COG0593 175 --SLDLLLIDDIQFLAGKERTQEEFFHTFNALLENGKQIVLTSDRPPKELNGLEDRLRSRLEWGLVVEIEPPDDETRLAI 252 (408)
T ss_pred --ccCeeeechHhHhcCChhHHHHHHHHHHHHHhcCCEEEEEcCCCchhhccccHHHHHHHhceeEEeeCCCCHHHHHHH
Confidence 344899999965221 122 222222222 12344899998643 2222334557899999999999999
Q ss_pred HHHhhcCCCCCCCChhHHHHHHHH
Q 007817 342 FVKHAFERRDAGAHQFSKLFRKKI 365 (588)
Q Consensus 342 f~~~a~~~~~~~~~~~~~~i~~~I 365 (588)
+.+.+...+....+....-++..+
T Consensus 253 L~kka~~~~~~i~~ev~~~la~~~ 276 (408)
T COG0593 253 LRKKAEDRGIEIPDEVLEFLAKRL 276 (408)
T ss_pred HHHHHHhcCCCCCHHHHHHHHHHh
Confidence 998764433333333333333333
No 126
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=97.58 E-value=0.0029 Score=62.54 Aligned_cols=55 Identities=24% Similarity=0.270 Sum_probs=34.3
Q ss_pred hhHHHHHHHHhcCCCCCCCCeEEEEEEccCCCcHHHHHHHHHcccccccccccEEEEEEeCCcccHHHH
Q 007817 176 EDKARMLEMVLSDDPTTDANFCVIPIVGMAGAGKTMLAREVYNDRAVQNFKFDVKAWVSVSDDFDVLRI 244 (588)
Q Consensus 176 ~e~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~ 244 (588)
.-++++..++... .-+.|.|++|+|||+||+.+.+... . ....+++....+..++
T Consensus 9 ~l~~~~l~~l~~g--------~~vLL~G~~GtGKT~lA~~la~~lg-----~-~~~~i~~~~~~~~~dl 63 (262)
T TIGR02640 9 RVTSRALRYLKSG--------YPVHLRGPAGTGKTTLAMHVARKRD-----R-PVMLINGDAELTTSDL 63 (262)
T ss_pred HHHHHHHHHHhcC--------CeEEEEcCCCCCHHHHHHHHHHHhC-----C-CEEEEeCCccCCHHHH
Confidence 3345556665433 3466899999999999999987321 1 2344555555444444
No 127
>PRK08118 topology modulation protein; Reviewed
Probab=97.57 E-value=3.9e-05 Score=70.26 Aligned_cols=35 Identities=29% Similarity=0.544 Sum_probs=29.4
Q ss_pred EEEEEccCCCcHHHHHHHHHcccccccccccEEEE
Q 007817 198 VIPIVGMAGAGKTMLAREVYNDRAVQNFKFDVKAW 232 (588)
Q Consensus 198 vv~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~w 232 (588)
.|.|+|++|+||||||+.+++.....-.+||..+|
T Consensus 3 rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD~l~~ 37 (167)
T PRK08118 3 KIILIGSGGSGKSTLARQLGEKLNIPVHHLDALFW 37 (167)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCceecchhhc
Confidence 58899999999999999999987665446777776
No 128
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=97.55 E-value=0.00018 Score=76.26 Aligned_cols=189 Identities=14% Similarity=0.145 Sum_probs=114.1
Q ss_pred CceeechhhHHHHHHHHhcCCCCCCCCeEEEEEEccCCCcHHHHHHHHHcccccccccccEEEEEEeCCcccHHHHHHHH
Q 007817 169 RAVYGRDEDKARMLEMVLSDDPTTDANFCVIPIVGMAGAGKTMLAREVYNDRAVQNFKFDVKAWVSVSDDFDVLRISRAL 248 (588)
Q Consensus 169 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i 248 (588)
.+++|-+.-...|...+.... -..--...|+-|+||||+|+.++.-..-.. | ....++..-...+.|
T Consensus 16 ~evvGQe~v~~~L~nal~~~r-----i~hAYlfsG~RGvGKTt~Ari~AkalNC~~-------~-~~~ePC~~C~~Ck~I 82 (515)
T COG2812 16 DDVVGQEHVVKTLSNALENGR-----IAHAYLFSGPRGVGKTTIARILAKALNCEN-------G-PTAEPCGKCISCKEI 82 (515)
T ss_pred HHhcccHHHHHHHHHHHHhCc-----chhhhhhcCCCCcCchhHHHHHHHHhcCCC-------C-CCCCcchhhhhhHhh
Confidence 357999999999999887653 335566889999999999999987553321 0 111222222222222
Q ss_pred HHH--hc------CCCCCCCCHHHHHHHHHHHh-cCCceeEEeccccccChhHHHHhhcccCCCCCCcEEEEeecchh-h
Q 007817 249 LES--IT------STNCDFKTLNEVQVKLRIIV-DGKKFLLVLDDVWNENYNLWEILKAPFMAGARNSKIIVTTCHSN-V 318 (588)
Q Consensus 249 l~~--l~------~~~~~~~~~~~l~~~l~~~l-~~k~~LLVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTTR~~~-v 318 (588)
-.. +. ......++..++.+.+...- +++.=+.|+|.|+..+...|+.++..+.........|+.|.+.. +
T Consensus 83 ~~g~~~DviEiDaASn~gVddiR~i~e~v~y~P~~~ryKVyiIDEvHMLS~~afNALLKTLEEPP~hV~FIlATTe~~Ki 162 (515)
T COG2812 83 NEGSLIDVIEIDAASNTGVDDIREIIEKVNYAPSEGRYKVYIIDEVHMLSKQAFNALLKTLEEPPSHVKFILATTEPQKI 162 (515)
T ss_pred hcCCcccchhhhhhhccChHHHHHHHHHhccCCccccceEEEEecHHhhhHHHHHHHhcccccCccCeEEEEecCCcCcC
Confidence 221 00 00001222222222222211 34555899999998888999999998877666777676666553 3
Q ss_pred hhh-ccccceeeCCCCCHHHHHHHHHHhhcCCCCCCCChhHHHHHHHHHHHhCCCch
Q 007817 319 ASM-MGSVEHYNLKLLSDEYCWSVFVKHAFERRDAGAHQFSKLFRKKIVAKCGGLPL 374 (588)
Q Consensus 319 ~~~-~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~i~~~I~~~c~GlPL 374 (588)
... ....+.|.++.++.++-...+...+-..+...++.. ...|++..+|..-
T Consensus 163 p~TIlSRcq~f~fkri~~~~I~~~L~~i~~~E~I~~e~~a----L~~ia~~a~Gs~R 215 (515)
T COG2812 163 PNTILSRCQRFDFKRLDLEEIAKHLAAILDKEGINIEEDA----LSLIARAAEGSLR 215 (515)
T ss_pred chhhhhccccccccCCCHHHHHHHHHHHHHhcCCccCHHH----HHHHHHHcCCChh
Confidence 322 345578999999999998888887754333222222 3346666666443
No 129
>PF10443 RNA12: RNA12 protein; InterPro: IPR018850 Mitochondrial escape protein 2 (also known as RNA12) plays a role in maintaining the mitochondrial genome and in controlling mtDNA escape [, ]. It is also involved in the regulation of mtDNA nucleotide structure and number []. Additionally, this protein have a dispensable role in the early maturation of pre-rRNA [].
Probab=97.54 E-value=0.011 Score=61.01 Aligned_cols=203 Identities=14% Similarity=0.165 Sum_probs=120.0
Q ss_pred chhhHHHHHHHHhcCCCCCCCCeEEEEEEccCCCcHHHHH-HHHHcccccccccccEEEEEEeCCc---ccHHHHHHHHH
Q 007817 174 RDEDKARMLEMVLSDDPTTDANFCVIPIVGMAGAGKTMLA-REVYNDRAVQNFKFDVKAWVSVSDD---FDVLRISRALL 249 (588)
Q Consensus 174 R~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLA-~~v~~~~~~~~~~f~~~~wv~v~~~---~~~~~~~~~il 249 (588)
|.+..++|..||.+... ..|.|.||-|+||+.|+ .++.++.+ .++.++|.+- .+-..++..++
T Consensus 1 R~e~~~~L~~wL~e~~~------TFIvV~GPrGSGK~elV~d~~L~~r~-------~vL~IDC~~i~~ar~D~~~I~~lA 67 (431)
T PF10443_consen 1 RKEAIEQLKSWLNENPN------TFIVVQGPRGSGKRELVMDHVLKDRK-------NVLVIDCDQIVKARGDAAFIKNLA 67 (431)
T ss_pred CchHHHHHHHHHhcCCC------eEEEEECCCCCCccHHHHHHHHhCCC-------CEEEEEChHhhhccChHHHHHHHH
Confidence 56778999999987643 79999999999999999 77776432 2455554321 12223333333
Q ss_pred HHhc-----------------------CCCCC-CCCH-HHHHHH-------HHH-------------------Hhc---C
Q 007817 250 ESIT-----------------------STNCD-FKTL-NEVQVK-------LRI-------------------IVD---G 275 (588)
Q Consensus 250 ~~l~-----------------------~~~~~-~~~~-~~l~~~-------l~~-------------------~l~---~ 275 (588)
.+++ +...+ ..+. .++... |+. +|+ .
T Consensus 68 ~qvGY~PvFsw~nSiss~IDLa~qGltGqKaGfSes~e~Ql~~IL~~t~~ALr~ial~~~~~~~~~~~l~e~~yl~~hPe 147 (431)
T PF10443_consen 68 SQVGYFPVFSWMNSISSFIDLAVQGLTGQKAGFSESLETQLKKILQTTATALRDIALSNRKKDDKDANLKEEDYLEAHPE 147 (431)
T ss_pred HhcCCCcchHHHHHHHHHHHHHHhhccccccCCCCChHHHHHHHHHHHHHHHHHHHHHhhhccccccccCchhhhhhCCc
Confidence 3332 21111 1121 122111 111 111 2
Q ss_pred CceeEEeccccccC---hhHHHHhh---cccCCCCCCcEEEEeecchhhhhhcc------ccceeeCCCCCHHHHHHHHH
Q 007817 276 KKFLLVLDDVWNEN---YNLWEILK---APFMAGARNSKIIVTTCHSNVASMMG------SVEHYNLKLLSDEYCWSVFV 343 (588)
Q Consensus 276 k~~LLVlDdv~~~~---~~~~~~l~---~~l~~~~~gs~ilvTTR~~~v~~~~~------~~~~~~l~~L~~~ea~~Lf~ 343 (588)
++-+|||||.-... ...|+.+. ..+.. .+-.+||++|-+......+. ..+.+.|...+++.|..+..
T Consensus 148 ~~PVVVIdnF~~k~~~~~~iy~~laeWAa~Lv~-~nIAHVIFlT~dv~~~k~LskaLPn~vf~tI~L~Das~~~Ak~yV~ 226 (431)
T PF10443_consen 148 RRPVVVIDNFLHKAEENDFIYDKLAEWAASLVQ-NNIAHVIFLTDDVSYSKPLSKALPNRVFKTISLSDASPESAKQYVL 226 (431)
T ss_pred cCCEEEEcchhccCcccchHHHHHHHHHHHHHh-cCccEEEEECCCCchhhhHHHhCCCCceeEEeecCCCHHHHHHHHH
Confidence 36799999984321 11222221 12222 24567888887765555432 34678999999999999999
Q ss_pred HhhcCCCCC------------CCC----hhHHHHHHHHHHHhCCCchHHHHhhhhccCCCCHH
Q 007817 344 KHAFERRDA------------GAH----QFSKLFRKKIVAKCGGLPLAVSTLGGLLRTRHTED 390 (588)
Q Consensus 344 ~~a~~~~~~------------~~~----~~~~~i~~~I~~~c~GlPLai~~~~~~L~~~~~~~ 390 (588)
.+....... ... .....-....+...||--.-|..+++.++...+++
T Consensus 227 ~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eld~~i~~LGGRltDLe~lvrRiksGe~p~ 289 (431)
T PF10443_consen 227 SQLDEDTEDSSDSKESNEQNKNDKSAENEKDLAELDECIEPLGGRLTDLEFLVRRIKSGESPE 289 (431)
T ss_pred HHhcccccccccccccccccccccccccccchHHHHHHHHHcCCcHHHHHHHHHHHHcCCCHH
Confidence 887442110 000 11222345688899999999999999999886654
No 130
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=97.53 E-value=0.0059 Score=66.07 Aligned_cols=86 Identities=15% Similarity=0.218 Sum_probs=59.0
Q ss_pred CCCeEEEEEEccCCCcHHHHHHHHHcccccccccccEEEEEEeCCcccHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHH
Q 007817 193 DANFCVIPIVGMAGAGKTMLAREVYNDRAVQNFKFDVKAWVSVSDDFDVLRISRALLESITSTNCDFKTLNEVQVKLRII 272 (588)
Q Consensus 193 ~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~il~~l~~~~~~~~~~~~l~~~l~~~ 272 (588)
.+.-+++.++|++|+||||||+.++++.. | .++=|++|+.-+...+-..|...+........
T Consensus 323 RP~kKilLL~GppGlGKTTLAHViAkqaG-----Y-sVvEINASDeRt~~~v~~kI~~avq~~s~l~a------------ 384 (877)
T KOG1969|consen 323 RPPKKILLLCGPPGLGKTTLAHVIAKQAG-----Y-SVVEINASDERTAPMVKEKIENAVQNHSVLDA------------ 384 (877)
T ss_pred CCccceEEeecCCCCChhHHHHHHHHhcC-----c-eEEEecccccccHHHHHHHHHHHHhhcccccc------------
Confidence 45668999999999999999999998532 2 35568888887777777776666543321100
Q ss_pred hcCCceeEEeccccccChhHHHHhh
Q 007817 273 VDGKKFLLVLDDVWNENYNLWEILK 297 (588)
Q Consensus 273 l~~k~~LLVlDdv~~~~~~~~~~l~ 297 (588)
.+++.-||+|.++.......+.+.
T Consensus 385 -dsrP~CLViDEIDGa~~~~Vdvil 408 (877)
T KOG1969|consen 385 -DSRPVCLVIDEIDGAPRAAVDVIL 408 (877)
T ss_pred -CCCcceEEEecccCCcHHHHHHHH
Confidence 267888999998665533344433
No 131
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=97.52 E-value=0.0021 Score=65.69 Aligned_cols=162 Identities=8% Similarity=0.027 Sum_probs=92.1
Q ss_pred eee-chhhHHHHHHHHhcCCCCCCCCeEEEEEEccCCCcHHHHHHHHHcccccccccccEEEEEEeCCcccHHHHHHHHH
Q 007817 171 VYG-RDEDKARMLEMVLSDDPTTDANFCVIPIVGMAGAGKTMLAREVYNDRAVQNFKFDVKAWVSVSDDFDVLRISRALL 249 (588)
Q Consensus 171 ~vG-R~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~il 249 (588)
++| -+.-.+.+.+.+.... -.....++|+.|+||||+|..+.+..--.. ..... .+. .-...+.+.
T Consensus 7 i~~~q~~~~~~L~~~~~~~~-----l~ha~Lf~G~~G~gk~~~a~~la~~l~c~~-~~~~~---~cg----~C~~c~~~~ 73 (329)
T PRK08058 7 LTALQPVVVKMLQNSIAKNR-----LSHAYLFEGAKGTGKKATALWLAKSLFCLE-RNGVE---PCG----TCTNCKRID 73 (329)
T ss_pred HHhhHHHHHHHHHHHHHcCC-----CCceEEEECCCCCCHHHHHHHHHHHHCCCC-CCCCC---CCC----cCHHHHHHh
Confidence 455 5556677777775432 346779999999999999988876542111 00000 000 000000000
Q ss_pred HHhcC------CCCCCCCHHHHHHHHHHH----hcCCceeEEeccccccChhHHHHhhcccCCCCCCcEEEEeecchh-h
Q 007817 250 ESITS------TNCDFKTLNEVQVKLRII----VDGKKFLLVLDDVWNENYNLWEILKAPFMAGARNSKIIVTTCHSN-V 318 (588)
Q Consensus 250 ~~l~~------~~~~~~~~~~l~~~l~~~----l~~k~~LLVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTTR~~~-v 318 (588)
..-.. .....-..+++...+... ..+.+=++|+|++...+....+.++..+.....++.+|++|.+.. +
T Consensus 74 ~~~hpD~~~i~~~~~~i~id~ir~l~~~~~~~~~~~~~kvviI~~a~~~~~~a~NaLLK~LEEPp~~~~~Il~t~~~~~l 153 (329)
T PRK08058 74 SGNHPDVHLVAPDGQSIKKDQIRYLKEEFSKSGVESNKKVYIIEHADKMTASAANSLLKFLEEPSGGTTAILLTENKHQI 153 (329)
T ss_pred cCCCCCEEEeccccccCCHHHHHHHHHHHhhCCcccCceEEEeehHhhhCHHHHHHHHHHhcCCCCCceEEEEeCChHhC
Confidence 00000 000111223333222221 234556899999988777778888888877667777777776543 3
Q ss_pred hhhc-cccceeeCCCCCHHHHHHHHHHh
Q 007817 319 ASMM-GSVEHYNLKLLSDEYCWSVFVKH 345 (588)
Q Consensus 319 ~~~~-~~~~~~~l~~L~~~ea~~Lf~~~ 345 (588)
...+ .....+++.+++.++....+...
T Consensus 154 l~TIrSRc~~i~~~~~~~~~~~~~L~~~ 181 (329)
T PRK08058 154 LPTILSRCQVVEFRPLPPESLIQRLQEE 181 (329)
T ss_pred cHHHHhhceeeeCCCCCHHHHHHHHHHc
Confidence 3322 24578999999999998888653
No 132
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=97.51 E-value=0.00054 Score=72.11 Aligned_cols=158 Identities=15% Similarity=0.143 Sum_probs=88.3
Q ss_pred CceeechhhHHHHHHHHhcCCC-------CCCCCeEEEEEEccCCCcHHHHHHHHHcccccccccccEEEEEEeCCcccH
Q 007817 169 RAVYGRDEDKARMLEMVLSDDP-------TTDANFCVIPIVGMAGAGKTMLAREVYNDRAVQNFKFDVKAWVSVSDDFDV 241 (588)
Q Consensus 169 ~~~vGR~~e~~~l~~~L~~~~~-------~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~wv~v~~~~~~ 241 (588)
.++.|.+..+++|.+.+.-+-. .+-....-+.|+|++|+|||+||+.+++.... .| +.+...
T Consensus 183 ~DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~el~~---~f-----i~V~~s--- 251 (438)
T PTZ00361 183 ADIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVANETSA---TF-----LRVVGS--- 251 (438)
T ss_pred HHhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHhhCC---CE-----EEEecc---
Confidence 3567899988888887742110 01123456889999999999999999986432 33 222111
Q ss_pred HHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhcCCceeEEeccccccC-----------hh---HHHHhhcccCC--CCC
Q 007817 242 LRISRALLESITSTNCDFKTLNEVQVKLRIIVDGKKFLLVLDDVWNEN-----------YN---LWEILKAPFMA--GAR 305 (588)
Q Consensus 242 ~~~~~~il~~l~~~~~~~~~~~~l~~~l~~~l~~k~~LLVlDdv~~~~-----------~~---~~~~l~~~l~~--~~~ 305 (588)
.+ .....+ .....+...+.....+.+.+|+||++.... .. ....+...+.. ...
T Consensus 252 -eL----~~k~~G-----e~~~~vr~lF~~A~~~~P~ILfIDEID~l~~kR~~~~sgg~~e~qr~ll~LL~~Ldg~~~~~ 321 (438)
T PTZ00361 252 -EL----IQKYLG-----DGPKLVRELFRVAEENAPSIVFIDEIDAIGTKRYDATSGGEKEIQRTMLELLNQLDGFDSRG 321 (438)
T ss_pred -hh----hhhhcc-----hHHHHHHHHHHHHHhCCCcEEeHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHHhhhcccC
Confidence 01 111110 111112222233334678999999984210 00 11112211211 123
Q ss_pred CcEEEEeecchhhhhh-c----cccceeeCCCCCHHHHHHHHHHhhc
Q 007817 306 NSKIIVTTCHSNVASM-M----GSVEHYNLKLLSDEYCWSVFVKHAF 347 (588)
Q Consensus 306 gs~ilvTTR~~~v~~~-~----~~~~~~~l~~L~~~ea~~Lf~~~a~ 347 (588)
+..||.||...+.... + .-...+++...+.++..++|..+..
T Consensus 322 ~V~VI~ATNr~d~LDpaLlRpGRfd~~I~~~~Pd~~~R~~Il~~~~~ 368 (438)
T PTZ00361 322 DVKVIMATNRIESLDPALIRPGRIDRKIEFPNPDEKTKRRIFEIHTS 368 (438)
T ss_pred CeEEEEecCChHHhhHHhccCCeeEEEEEeCCCCHHHHHHHHHHHHh
Confidence 5678888876544332 1 1235789999999999999997763
No 133
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.50 E-value=0.0014 Score=68.74 Aligned_cols=119 Identities=18% Similarity=0.126 Sum_probs=75.3
Q ss_pred EEEEEccCCCcHHHHHHHHHcccccccccccEEEEEEeCCcccHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhcCCc
Q 007817 198 VIPIVGMAGAGKTMLAREVYNDRAVQNFKFDVKAWVSVSDDFDVLRISRALLESITSTNCDFKTLNEVQVKLRIIVDGKK 277 (588)
Q Consensus 198 vv~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~il~~l~~~~~~~~~~~~l~~~l~~~l~~k~ 277 (588)
++.|.|+-++|||||++.+...... . .++++..+......-+.+. ...+...-..++
T Consensus 39 i~~i~GpR~~GKTtll~~l~~~~~~---~---~iy~~~~d~~~~~~~l~d~-----------------~~~~~~~~~~~~ 95 (398)
T COG1373 39 IILILGPRQVGKTTLLKLLIKGLLE---E---IIYINFDDLRLDRIELLDL-----------------LRAYIELKEREK 95 (398)
T ss_pred EEEEECCccccHHHHHHHHHhhCCc---c---eEEEEecchhcchhhHHHH-----------------HHHHHHhhccCC
Confidence 9999999999999999777664322 1 4555543321111111111 111111111277
Q ss_pred eeEEeccccccChhHHHHhhcccCCCCCCcEEEEeecchhhhhh------ccccceeeCCCCCHHHHHHHH
Q 007817 278 FLLVLDDVWNENYNLWEILKAPFMAGARNSKIIVTTCHSNVASM------MGSVEHYNLKLLSDEYCWSVF 342 (588)
Q Consensus 278 ~LLVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTTR~~~v~~~------~~~~~~~~l~~L~~~ea~~Lf 342 (588)
.+|+||.|+.. ..|......+....+. +|++|+-+...... .+....+++.||+..|...+-
T Consensus 96 ~yifLDEIq~v--~~W~~~lk~l~d~~~~-~v~itgsss~ll~~~~~~~L~GR~~~~~l~PlSF~Efl~~~ 163 (398)
T COG1373 96 SYIFLDEIQNV--PDWERALKYLYDRGNL-DVLITGSSSSLLSKEISESLAGRGKDLELYPLSFREFLKLK 163 (398)
T ss_pred ceEEEecccCc--hhHHHHHHHHHccccc-eEEEECCchhhhccchhhhcCCCceeEEECCCCHHHHHhhc
Confidence 89999999654 5788887777776555 88888876644322 124467999999999987654
No 134
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=97.49 E-value=0.0021 Score=69.76 Aligned_cols=185 Identities=18% Similarity=0.186 Sum_probs=96.1
Q ss_pred CceeechhhHHHHHHHHh---cCCC---CCCCCeEEEEEEccCCCcHHHHHHHHHcccccccccccEEEEEEeCCcccHH
Q 007817 169 RAVYGRDEDKARMLEMVL---SDDP---TTDANFCVIPIVGMAGAGKTMLAREVYNDRAVQNFKFDVKAWVSVSDDFDVL 242 (588)
Q Consensus 169 ~~~vGR~~e~~~l~~~L~---~~~~---~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~wv~v~~~~~~~ 242 (588)
.+++|-+..++++.+++. .+.. .+...++-+.++|++|+|||+||+.+++.... .| +.++..
T Consensus 55 ~di~g~~~~k~~l~~~~~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~~~---~~-----~~i~~~---- 122 (495)
T TIGR01241 55 KDVAGIDEAKEELMEIVDFLKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGV---PF-----FSISGS---- 122 (495)
T ss_pred HHhCCHHHHHHHHHHHHHHHHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcCC---Ce-----eeccHH----
Confidence 457787776665554443 2110 01223456889999999999999999985432 21 222211
Q ss_pred HHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhcCCceeEEeccccccC----------hhHH----HHhhcccC--CCCCC
Q 007817 243 RISRALLESITSTNCDFKTLNEVQVKLRIIVDGKKFLLVLDDVWNEN----------YNLW----EILKAPFM--AGARN 306 (588)
Q Consensus 243 ~~~~~il~~l~~~~~~~~~~~~l~~~l~~~l~~k~~LLVlDdv~~~~----------~~~~----~~l~~~l~--~~~~g 306 (588)
++. ....+ .....+...+.......+.+|+|||++.-. ...+ ..+...+. ....+
T Consensus 123 ~~~----~~~~g-----~~~~~l~~~f~~a~~~~p~Il~iDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~~d~~~~~~~ 193 (495)
T TIGR01241 123 DFV----EMFVG-----VGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGTNTG 193 (495)
T ss_pred HHH----HHHhc-----ccHHHHHHHHHHHHhcCCCEEEEechhhhhhccccCcCCccHHHHHHHHHHHhhhccccCCCC
Confidence 111 11100 112223333444445678999999984311 1111 22222221 12234
Q ss_pred cEEEEeecchhhhh-hc----cccceeeCCCCCHHHHHHHHHHhhcCCCCCCCChhHHHHHHHHHHHhCCC-chHHHHh
Q 007817 307 SKIIVTTCHSNVAS-MM----GSVEHYNLKLLSDEYCWSVFVKHAFERRDAGAHQFSKLFRKKIVAKCGGL-PLAVSTL 379 (588)
Q Consensus 307 s~ilvTTR~~~v~~-~~----~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~i~~~I~~~c~Gl-PLai~~~ 379 (588)
..||.||....... .+ .-...++++..+.++-.++|..+...... ..... ...+++.+.|. +-.|..+
T Consensus 194 v~vI~aTn~~~~ld~al~r~gRfd~~i~i~~Pd~~~R~~il~~~l~~~~~-~~~~~----l~~la~~t~G~sgadl~~l 267 (495)
T TIGR01241 194 VIVIAATNRPDVLDPALLRPGRFDRQVVVDLPDIKGREEILKVHAKNKKL-APDVD----LKAVARRTPGFSGADLANL 267 (495)
T ss_pred eEEEEecCChhhcCHHHhcCCcceEEEEcCCCCHHHHHHHHHHHHhcCCC-Ccchh----HHHHHHhCCCCCHHHHHHH
Confidence 55666775543221 11 12357889999999889998877633211 11112 23678888774 3334433
No 135
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=97.47 E-value=0.00043 Score=76.48 Aligned_cols=126 Identities=16% Similarity=0.254 Sum_probs=80.7
Q ss_pred CceeechhhHHHHHHHHhcCCCC---CCCCeEEEEEEccCCCcHHHHHHHHHcccccccccccEEEEEEeCCcccHHHHH
Q 007817 169 RAVYGRDEDKARMLEMVLSDDPT---TDANFCVIPIVGMAGAGKTMLAREVYNDRAVQNFKFDVKAWVSVSDDFDVLRIS 245 (588)
Q Consensus 169 ~~~vGR~~e~~~l~~~L~~~~~~---~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~ 245 (588)
..++|-+..+..+.+.+.....+ .+....+....|+.|||||-||+.++...-... +..+-++.|.-...
T Consensus 491 ~rViGQd~AV~avs~aIrraRaGL~dp~rPigsFlF~GPTGVGKTELAkaLA~~Lfg~e---~aliR~DMSEy~Ek---- 563 (786)
T COG0542 491 KRVIGQDEAVEAVSDAIRRARAGLGDPNRPIGSFLFLGPTGVGKTELAKALAEALFGDE---QALIRIDMSEYMEK---- 563 (786)
T ss_pred cceeChHHHHHHHHHHHHHHhcCCCCCCCCceEEEeeCCCcccHHHHHHHHHHHhcCCC---ccceeechHHHHHH----
Confidence 46899999999998888654321 244567888999999999999999987542211 33344444433211
Q ss_pred HHHHHHhcCCCCCCCCHHHHHHHHHHHhcCCce-eEEeccccccChhHHHHhhcccCCC
Q 007817 246 RALLESITSTNCDFKTLNEVQVKLRIIVDGKKF-LLVLDDVWNENYNLWEILKAPFMAG 303 (588)
Q Consensus 246 ~~il~~l~~~~~~~~~~~~l~~~l~~~l~~k~~-LLVlDdv~~~~~~~~~~l~~~l~~~ 303 (588)
.-...|-+.+++--..++ -..|.+.++.+|| +|.||++...+++..+.+...|..+
T Consensus 564 -HsVSrLIGaPPGYVGyee-GG~LTEaVRr~PySViLlDEIEKAHpdV~nilLQVlDdG 620 (786)
T COG0542 564 -HSVSRLIGAPPGYVGYEE-GGQLTEAVRRKPYSVILLDEIEKAHPDVFNLLLQVLDDG 620 (786)
T ss_pred -HHHHHHhCCCCCCceecc-ccchhHhhhcCCCeEEEechhhhcCHHHHHHHHHHhcCC
Confidence 122333333332211111 2245556678888 8889999888888888888877654
No 136
>PRK10865 protein disaggregation chaperone; Provisional
Probab=97.47 E-value=0.0016 Score=74.87 Aligned_cols=125 Identities=16% Similarity=0.184 Sum_probs=71.1
Q ss_pred CceeechhhHHHHHHHHhcCCCC---CCCCeEEEEEEccCCCcHHHHHHHHHcccccccccccEEEEEEeCCcccHHHHH
Q 007817 169 RAVYGRDEDKARMLEMVLSDDPT---TDANFCVIPIVGMAGAGKTMLAREVYNDRAVQNFKFDVKAWVSVSDDFDVLRIS 245 (588)
Q Consensus 169 ~~~vGR~~e~~~l~~~L~~~~~~---~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~ 245 (588)
..++|.+..++.+...+.....+ .+....++.++|+.|+|||+||+.+++..... -...+.++++.-.. .
T Consensus 568 ~~viGQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~Lf~Gp~G~GKT~lA~aLa~~l~~~---~~~~i~id~se~~~-~--- 640 (857)
T PRK10865 568 HRVIGQNEAVEAVSNAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELCKALANFMFDS---DDAMVRIDMSEFME-K--- 640 (857)
T ss_pred CeEeCCHHHHHHHHHHHHHHHhcccCCCCCCceEEEECCCCCCHHHHHHHHHHHhhcC---CCcEEEEEhHHhhh-h---
Confidence 45889999988888888643210 12233578899999999999999998754321 12234444443211 1
Q ss_pred HHHHHHhcCCCCCCCCHHHHHHHHHHHhcCCc-eeEEeccccccChhHHHHhhcccCC
Q 007817 246 RALLESITSTNCDFKTLNEVQVKLRIIVDGKK-FLLVLDDVWNENYNLWEILKAPFMA 302 (588)
Q Consensus 246 ~~il~~l~~~~~~~~~~~~l~~~l~~~l~~k~-~LLVlDdv~~~~~~~~~~l~~~l~~ 302 (588)
.....+.+..+.....+. ...+.+.++.++ -+|+|||+...+...++.+...+..
T Consensus 641 -~~~~~LiG~~pgy~g~~~-~g~l~~~v~~~p~~vLllDEieka~~~v~~~Ll~ile~ 696 (857)
T PRK10865 641 -HSVSRLVGAPPGYVGYEE-GGYLTEAVRRRPYSVILLDEVEKAHPDVFNILLQVLDD 696 (857)
T ss_pred -hhHHHHhCCCCcccccch-hHHHHHHHHhCCCCeEEEeehhhCCHHHHHHHHHHHhh
Confidence 112222222222111111 112333333333 5999999987777788877766643
No 137
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=97.46 E-value=0.0011 Score=70.92 Aligned_cols=168 Identities=15% Similarity=0.114 Sum_probs=91.2
Q ss_pred CceeechhhHHHHHHHHhcCCC-------CCCCCeEEEEEEccCCCcHHHHHHHHHcccccccc--cccEEEEEEeCCcc
Q 007817 169 RAVYGRDEDKARMLEMVLSDDP-------TTDANFCVIPIVGMAGAGKTMLAREVYNDRAVQNF--KFDVKAWVSVSDDF 239 (588)
Q Consensus 169 ~~~vGR~~e~~~l~~~L~~~~~-------~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~--~f~~~~wv~v~~~~ 239 (588)
..+.|.+..++++.+.+..+-. .+-..++-+.++|++|+|||++|+.+++......+ ......|+++...
T Consensus 182 ~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~eL~~~i~~~~~~~~~fl~v~~~- 260 (512)
T TIGR03689 182 ADIGGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANSLAQRIGAETGDKSYFLNIKGP- 260 (512)
T ss_pred HHcCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHhhccccccccCCceeEEeccch-
Confidence 4567899999888887643110 01123456899999999999999999997643210 1223444554432
Q ss_pred cHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHH-hcCCceeEEeccccccC--------hh----HHHHhhcccCC--CC
Q 007817 240 DVLRISRALLESITSTNCDFKTLNEVQVKLRII-VDGKKFLLVLDDVWNEN--------YN----LWEILKAPFMA--GA 304 (588)
Q Consensus 240 ~~~~~~~~il~~l~~~~~~~~~~~~l~~~l~~~-l~~k~~LLVlDdv~~~~--------~~----~~~~l~~~l~~--~~ 304 (588)
+++....+. .......+....+.. ..+++++|+||+++..- .+ ....+...+.. ..
T Consensus 261 -------eLl~kyvGe--te~~ir~iF~~Ar~~a~~g~p~IIfIDEiD~L~~~R~~~~s~d~e~~il~~LL~~LDgl~~~ 331 (512)
T TIGR03689 261 -------ELLNKYVGE--TERQIRLIFQRAREKASDGRPVIVFFDEMDSIFRTRGSGVSSDVETTVVPQLLSELDGVESL 331 (512)
T ss_pred -------hhcccccch--HHHHHHHHHHHHHHHhhcCCCceEEEehhhhhhcccCCCccchHHHHHHHHHHHHhcccccC
Confidence 111111000 001111222222222 23578999999996320 00 11233333322 12
Q ss_pred CCcEEEEeecchhhhhh-c----cccceeeCCCCCHHHHHHHHHHhh
Q 007817 305 RNSKIIVTTCHSNVASM-M----GSVEHYNLKLLSDEYCWSVFVKHA 346 (588)
Q Consensus 305 ~gs~ilvTTR~~~v~~~-~----~~~~~~~l~~L~~~ea~~Lf~~~a 346 (588)
.+..||.||........ + .-...++++..+.++..++|..+.
T Consensus 332 ~~ViVI~ATN~~d~LDpALlRpGRfD~~I~~~~Pd~e~r~~Il~~~l 378 (512)
T TIGR03689 332 DNVIVIGASNREDMIDPAILRPGRLDVKIRIERPDAEAAADIFSKYL 378 (512)
T ss_pred CceEEEeccCChhhCCHhhcCccccceEEEeCCCCHHHHHHHHHHHh
Confidence 34556666655433221 1 123468999999999999999886
No 138
>PRK13531 regulatory ATPase RavA; Provisional
Probab=97.45 E-value=0.00096 Score=70.18 Aligned_cols=153 Identities=16% Similarity=0.269 Sum_probs=84.8
Q ss_pred CceeechhhHHHHHHHHhcCCCCCCCCeEEEEEEccCCCcHHHHHHHHHcccccccccccEEEEEEeCCcccHHHHHHHH
Q 007817 169 RAVYGRDEDKARMLEMVLSDDPTTDANFCVIPIVGMAGAGKTMLAREVYNDRAVQNFKFDVKAWVSVSDDFDVLRISRAL 248 (588)
Q Consensus 169 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i 248 (588)
..++||++.++.+...+.... -|.|.|++|+|||+||+.+........ .|.... +..+. ..+++..+
T Consensus 20 ~~i~gre~vI~lll~aalag~--------hVLL~GpPGTGKT~LAraLa~~~~~~~-~F~~~~-~~ftt---p~DLfG~l 86 (498)
T PRK13531 20 KGLYERSHAIRLCLLAALSGE--------SVFLLGPPGIAKSLIARRLKFAFQNAR-AFEYLM-TRFST---PEEVFGPL 86 (498)
T ss_pred hhccCcHHHHHHHHHHHccCC--------CEEEECCCChhHHHHHHHHHHHhcccC-cceeee-eeecC---cHHhcCcH
Confidence 358899999999999987664 588999999999999999988543322 232211 11111 11222111
Q ss_pred -HHHhcCCCCCCCCHHHHHHHHHHHhcC---CceeEEeccccccChhHHHHhhcccCCC-----C----CCcEEEEeecc
Q 007817 249 -LESITSTNCDFKTLNEVQVKLRIIVDG---KKFLLVLDDVWNENYNLWEILKAPFMAG-----A----RNSKIIVTTCH 315 (588)
Q Consensus 249 -l~~l~~~~~~~~~~~~l~~~l~~~l~~---k~~LLVlDdv~~~~~~~~~~l~~~l~~~-----~----~gs~ilvTTR~ 315 (588)
+.... ... .+.....| ..-+|++|+++..+......+...+... + -..++++++.+
T Consensus 87 ~i~~~~----~~g-------~f~r~~~G~L~~A~lLfLDEI~rasp~~QsaLLeam~Er~~t~g~~~~~lp~rfiv~ATN 155 (498)
T PRK13531 87 SIQALK----DEG-------RYQRLTSGYLPEAEIVFLDEIWKAGPAILNTLLTAINERRFRNGAHEEKIPMRLLVTASN 155 (498)
T ss_pred HHhhhh----hcC-------chhhhcCCccccccEEeecccccCCHHHHHHHHHHHHhCeEecCCeEEeCCCcEEEEECC
Confidence 11100 000 01111112 1228999999988777766666555221 1 12356666655
Q ss_pred hhhh------hhcc-ccceeeCCCCCHH-HHHHHHHHh
Q 007817 316 SNVA------SMMG-SVEHYNLKLLSDE-YCWSVFVKH 345 (588)
Q Consensus 316 ~~v~------~~~~-~~~~~~l~~L~~~-ea~~Lf~~~ 345 (588)
+-.. .... -.-.+.+++++++ +-.+++...
T Consensus 156 ~LPE~g~~leAL~DRFliri~vp~l~~~~~e~~lL~~~ 193 (498)
T PRK13531 156 ELPEADSSLEALYDRMLIRLWLDKVQDKANFRSMLTSQ 193 (498)
T ss_pred CCcccCCchHHhHhhEEEEEECCCCCchHHHHHHHHcc
Confidence 3221 0111 1235888999854 447777654
No 139
>CHL00176 ftsH cell division protein; Validated
Probab=97.45 E-value=0.0011 Score=73.36 Aligned_cols=177 Identities=16% Similarity=0.223 Sum_probs=95.4
Q ss_pred CceeechhhHHHHHHH---HhcCCC---CCCCCeEEEEEEccCCCcHHHHHHHHHcccccccccccEEEEEEeCCcccHH
Q 007817 169 RAVYGRDEDKARMLEM---VLSDDP---TTDANFCVIPIVGMAGAGKTMLAREVYNDRAVQNFKFDVKAWVSVSDDFDVL 242 (588)
Q Consensus 169 ~~~vGR~~e~~~l~~~---L~~~~~---~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~wv~v~~~~~~~ 242 (588)
.++.|.++.++++.+. +..+.. .+...++-+.++|++|+|||+||+.+++.... . |+.++..
T Consensus 183 ~dv~G~~~~k~~l~eiv~~lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e~~~---p-----~i~is~s---- 250 (638)
T CHL00176 183 RDIAGIEEAKEEFEEVVSFLKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAEV---P-----FFSISGS---- 250 (638)
T ss_pred HhccChHHHHHHHHHHHHHHhCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCC---C-----eeeccHH----
Confidence 4577877655554444 433221 01123456899999999999999999885432 1 2222211
Q ss_pred HHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhcCCceeEEeccccccC----------hh----HHHHhhcccCC--CCCC
Q 007817 243 RISRALLESITSTNCDFKTLNEVQVKLRIIVDGKKFLLVLDDVWNEN----------YN----LWEILKAPFMA--GARN 306 (588)
Q Consensus 243 ~~~~~il~~l~~~~~~~~~~~~l~~~l~~~l~~k~~LLVlDdv~~~~----------~~----~~~~l~~~l~~--~~~g 306 (588)
++. ....+ .....+...+.......+++|+|||++.-. .. .+..+...+.. ...+
T Consensus 251 ~f~----~~~~g-----~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~~dg~~~~~~ 321 (638)
T CHL00176 251 EFV----EMFVG-----VGAARVRDLFKKAKENSPCIVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFKGNKG 321 (638)
T ss_pred HHH----HHhhh-----hhHHHHHHHHHHHhcCCCcEEEEecchhhhhcccCCCCCCcHHHHHHHHHHHhhhccccCCCC
Confidence 111 11000 111223334444556788999999995321 11 12233322221 2345
Q ss_pred cEEEEeecchhhhhh-c-c---ccceeeCCCCCHHHHHHHHHHhhcCCCCCCCChhHHHHHHHHHHHhCC
Q 007817 307 SKIIVTTCHSNVASM-M-G---SVEHYNLKLLSDEYCWSVFVKHAFERRDAGAHQFSKLFRKKIVAKCGG 371 (588)
Q Consensus 307 s~ilvTTR~~~v~~~-~-~---~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~i~~~I~~~c~G 371 (588)
..||.||...+.... + . -...+.++..+.++-.+++..++.... ..+ ......+++.+.|
T Consensus 322 ViVIaaTN~~~~LD~ALlRpGRFd~~I~v~lPd~~~R~~IL~~~l~~~~---~~~--d~~l~~lA~~t~G 386 (638)
T CHL00176 322 VIVIAATNRVDILDAALLRPGRFDRQITVSLPDREGRLDILKVHARNKK---LSP--DVSLELIARRTPG 386 (638)
T ss_pred eeEEEecCchHhhhhhhhccccCceEEEECCCCHHHHHHHHHHHHhhcc---cch--hHHHHHHHhcCCC
Confidence 667777766443221 1 1 235788899999999999988774311 111 1123457777777
No 140
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=97.45 E-value=0.0027 Score=72.03 Aligned_cols=167 Identities=17% Similarity=0.201 Sum_probs=89.7
Q ss_pred CCceeechhhHHHHHHHHhcCCCCCCCCeEEEEEEccCCCcHHHHHHHHHcccccccccccEEEEEEeCCcccHHHHHHH
Q 007817 168 ERAVYGRDEDKARMLEMVLSDDPTTDANFCVIPIVGMAGAGKTMLAREVYNDRAVQNFKFDVKAWVSVSDDFDVLRISRA 247 (588)
Q Consensus 168 ~~~~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~ 247 (588)
....+|.++-+++|.++|............++.++|++|+||||+|+.++..... .|-. ++++...+...+...
T Consensus 321 ~~~~~g~~~vK~~i~~~l~~~~~~~~~~g~~i~l~GppG~GKTtl~~~ia~~l~~---~~~~---i~~~~~~d~~~i~g~ 394 (784)
T PRK10787 321 DTDHYGLERVKDRILEYLAVQSRVNKIKGPILCLVGPPGVGKTSLGQSIAKATGR---KYVR---MALGGVRDEAEIRGH 394 (784)
T ss_pred hhhccCHHHHHHHHHHHHHHHHhcccCCCceEEEECCCCCCHHHHHHHHHHHhCC---CEEE---EEcCCCCCHHHhccc
Confidence 3458999999999998887422111223468999999999999999999975432 2211 333333332222111
Q ss_pred HHHHhcCCCCCCCCHHHHHHHHHHHhcCCceeEEeccccccChhH----HHHhhcccCCC---------------CCCcE
Q 007817 248 LLESITSTNCDFKTLNEVQVKLRIIVDGKKFLLVLDDVWNENYNL----WEILKAPFMAG---------------ARNSK 308 (588)
Q Consensus 248 il~~l~~~~~~~~~~~~l~~~l~~~l~~k~~LLVlDdv~~~~~~~----~~~l~~~l~~~---------------~~gs~ 308 (588)
--... +.. ...+...+... ....-+|+||.++...... ...+...+.+. -...-
T Consensus 395 ~~~~~-----g~~-~G~~~~~l~~~-~~~~~villDEidk~~~~~~g~~~~aLlevld~~~~~~~~d~~~~~~~dls~v~ 467 (784)
T PRK10787 395 RRTYI-----GSM-PGKLIQKMAKV-GVKNPLFLLDEIDKMSSDMRGDPASALLEVLDPEQNVAFSDHYLEVDYDLSDVM 467 (784)
T ss_pred hhccC-----CCC-CcHHHHHHHhc-CCCCCEEEEEChhhcccccCCCHHHHHHHHhccccEEEEecccccccccCCceE
Confidence 00000 111 11222233322 2234478899986433211 23333332221 12334
Q ss_pred EEEeecchhhhhh-ccccceeeCCCCCHHHHHHHHHHhhc
Q 007817 309 IIVTTCHSNVASM-MGSVEHYNLKLLSDEYCWSVFVKHAF 347 (588)
Q Consensus 309 ilvTTR~~~v~~~-~~~~~~~~l~~L~~~ea~~Lf~~~a~ 347 (588)
+|.|+.+..+... .....++++.+++.++-.++..++..
T Consensus 468 ~i~TaN~~~i~~aLl~R~~ii~~~~~t~eek~~Ia~~~L~ 507 (784)
T PRK10787 468 FVATSNSMNIPAPLLDRMEVIRLSGYTEDEKLNIAKRHLL 507 (784)
T ss_pred EEEcCCCCCCCHHHhcceeeeecCCCCHHHHHHHHHHhhh
Confidence 4555544332222 22446799999999999888877663
No 141
>PRK07261 topology modulation protein; Provisional
Probab=97.44 E-value=0.00033 Score=64.41 Aligned_cols=66 Identities=17% Similarity=0.300 Sum_probs=41.2
Q ss_pred EEEEEccCCCcHHHHHHHHHcccccccccccEEEEEEeCCcccHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhcCCc
Q 007817 198 VIPIVGMAGAGKTMLAREVYNDRAVQNFKFDVKAWVSVSDDFDVLRISRALLESITSTNCDFKTLNEVQVKLRIIVDGKK 277 (588)
Q Consensus 198 vv~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~il~~l~~~~~~~~~~~~l~~~l~~~l~~k~ 277 (588)
.|+|+|++|+||||||+.+.........+.|...|-... ...+.++....+...+.+.+
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~~~~~~i~~D~~~~~~~~---------------------~~~~~~~~~~~~~~~~~~~~ 60 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQHYNCPVLHLDTLHFQPNW---------------------QERDDDDMIADISNFLLKHD 60 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCCeEecCCEEecccc---------------------ccCCHHHHHHHHHHHHhCCC
Confidence 488999999999999999987654332245555552111 12233455555666666555
Q ss_pred eeEEecccc
Q 007817 278 FLLVLDDVW 286 (588)
Q Consensus 278 ~LLVlDdv~ 286 (588)
.|+|+..
T Consensus 61 --wIidg~~ 67 (171)
T PRK07261 61 --WIIDGNY 67 (171)
T ss_pred --EEEcCcc
Confidence 5777763
No 142
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=97.43 E-value=0.0046 Score=63.07 Aligned_cols=93 Identities=14% Similarity=0.198 Sum_probs=66.4
Q ss_pred CCceeEEeccccccChhHHHHhhcccCCCCCCcEEEEeecc-hhhhhh-ccccceeeCCCCCHHHHHHHHHHhhcCCCCC
Q 007817 275 GKKFLLVLDDVWNENYNLWEILKAPFMAGARNSKIIVTTCH-SNVASM-MGSVEHYNLKLLSDEYCWSVFVKHAFERRDA 352 (588)
Q Consensus 275 ~k~~LLVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTTR~-~~v~~~-~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~ 352 (588)
++.=++|+|+++..+....+.+...+....+++.+|++|.+ ..+... .+....+.+.+++.++..+.+.... .
T Consensus 131 ~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~LLpTI~SRcq~i~~~~~~~~~~~~~L~~~~----~- 205 (342)
T PRK06964 131 GGARVVVLYPAEALNVAAANALLKTLEEPPPGTVFLLVSARIDRLLPTILSRCRQFPMTVPAPEAAAAWLAAQG----V- 205 (342)
T ss_pred CCceEEEEechhhcCHHHHHHHHHHhcCCCcCcEEEEEECChhhCcHHHHhcCEEEEecCCCHHHHHHHHHHcC----C-
Confidence 44558899999988888999999888877777766666655 444433 2345789999999999999887652 1
Q ss_pred CCChhHHHHHHHHHHHhCCCchHHHHh
Q 007817 353 GAHQFSKLFRKKIVAKCGGLPLAVSTL 379 (588)
Q Consensus 353 ~~~~~~~~i~~~I~~~c~GlPLai~~~ 379 (588)
.+ ...++..++|.|+.+..+
T Consensus 206 --~~-----~~~~l~~~~Gsp~~Al~~ 225 (342)
T PRK06964 206 --AD-----ADALLAEAGGAPLAALAL 225 (342)
T ss_pred --Ch-----HHHHHHHcCCCHHHHHHH
Confidence 11 123577889999765444
No 143
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=97.42 E-value=0.0023 Score=72.74 Aligned_cols=120 Identities=17% Similarity=0.222 Sum_probs=71.2
Q ss_pred CceeechhhHHHHHHHHhcCCCC---CCCCeEEEEEEccCCCcHHHHHHHHHcccccccccccEEEEEEeCCcccHHHHH
Q 007817 169 RAVYGRDEDKARMLEMVLSDDPT---TDANFCVIPIVGMAGAGKTMLAREVYNDRAVQNFKFDVKAWVSVSDDFDVLRIS 245 (588)
Q Consensus 169 ~~~vGR~~e~~~l~~~L~~~~~~---~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~ 245 (588)
..++|-+..++.+.+.+...... ......++.++|++|+|||+||+.+++... ...+.++.+.-.....
T Consensus 454 ~~v~GQ~~ai~~l~~~i~~~~~g~~~~~~p~~~~lf~Gp~GvGKT~lA~~la~~l~------~~~~~~d~se~~~~~~-- 525 (731)
T TIGR02639 454 AKIFGQDEAIDSLVSSIKRSRAGLGNPNKPVGSFLFTGPTGVGKTELAKQLAEALG------VHLERFDMSEYMEKHT-- 525 (731)
T ss_pred cceeCcHHHHHHHHHHHHHHhcCCCCCCCCceeEEEECCCCccHHHHHHHHHHHhc------CCeEEEeCchhhhccc--
Confidence 45789888888888887643210 122345789999999999999999988542 2234455543222111
Q ss_pred HHHHHHhcCCCC--CCCCHHHHHHHHHHHhcCCc-eeEEeccccccChhHHHHhhcccCC
Q 007817 246 RALLESITSTNC--DFKTLNEVQVKLRIIVDGKK-FLLVLDDVWNENYNLWEILKAPFMA 302 (588)
Q Consensus 246 ~~il~~l~~~~~--~~~~~~~l~~~l~~~l~~k~-~LLVlDdv~~~~~~~~~~l~~~l~~ 302 (588)
+...++.... +..... .+.+.++.++ -+|+||+++..+.+.++.+...+..
T Consensus 526 --~~~lig~~~gyvg~~~~~----~l~~~~~~~p~~VvllDEieka~~~~~~~Ll~~ld~ 579 (731)
T TIGR02639 526 --VSRLIGAPPGYVGFEQGG----LLTEAVRKHPHCVLLLDEIEKAHPDIYNILLQVMDY 579 (731)
T ss_pred --HHHHhcCCCCCcccchhh----HHHHHHHhCCCeEEEEechhhcCHHHHHHHHHhhcc
Confidence 1111222211 111122 2333343344 5999999988888788887776654
No 144
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=97.39 E-value=0.01 Score=60.54 Aligned_cols=179 Identities=11% Similarity=0.037 Sum_probs=103.7
Q ss_pred hHHHHHHHHhcCCCCCCCCeEEEEEEccCCCcHHHHHHHHHcccccccc--cccE-----EEEEEeCCcccHHHHHHHHH
Q 007817 177 DKARMLEMVLSDDPTTDANFCVIPIVGMAGAGKTMLAREVYNDRAVQNF--KFDV-----KAWVSVSDDFDVLRISRALL 249 (588)
Q Consensus 177 e~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~--~f~~-----~~wv~v~~~~~~~~~~~~il 249 (588)
.-+++.+.+..+. -...+.+.|+.|+||+++|..++...--... .-.| +-++..+..+|+..+
T Consensus 10 ~~~~l~~~~~~~r-----l~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i----- 79 (334)
T PRK07993 10 DYEQLVGSYQAGR-----GHHALLIQALPGMGDDALIYALSRWLMCQQPQGHKSCGHCRGCQLMQAGTHPDYYTL----- 79 (334)
T ss_pred HHHHHHHHHHcCC-----cceEEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCCEEEE-----
Confidence 4456666665432 4568889999999999999887665421100 0000 000001111111100
Q ss_pred HHhcCCCC-CCCCHHHHHHHHHHHh-----cCCceeEEeccccccChhHHHHhhcccCCCCCCcEEEEeecch-hhhhh-
Q 007817 250 ESITSTNC-DFKTLNEVQVKLRIIV-----DGKKFLLVLDDVWNENYNLWEILKAPFMAGARNSKIIVTTCHS-NVASM- 321 (588)
Q Consensus 250 ~~l~~~~~-~~~~~~~l~~~l~~~l-----~~k~~LLVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTTR~~-~v~~~- 321 (588)
.+... ..-.+++... +.+.+ .+++=++|+|+++..+...-+.++..+.....++.+|++|.+. .+...
T Consensus 80 ---~p~~~~~~I~idqiR~-l~~~~~~~~~~g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~lLpTI 155 (334)
T PRK07993 80 ---TPEKGKSSLGVDAVRE-VTEKLYEHARLGGAKVVWLPDAALLTDAAANALLKTLEEPPENTWFFLACREPARLLATL 155 (334)
T ss_pred ---ecccccccCCHHHHHH-HHHHHhhccccCCceEEEEcchHhhCHHHHHHHHHHhcCCCCCeEEEEEECChhhChHHH
Confidence 00000 0112333332 22222 3566699999998888888888888888766777777777654 34433
Q ss_pred ccccceeeCCCCCHHHHHHHHHHhhcCCCCCCCChhHHHHHHHHHHHhCCCchHHHH
Q 007817 322 MGSVEHYNLKLLSDEYCWSVFVKHAFERRDAGAHQFSKLFRKKIVAKCGGLPLAVST 378 (588)
Q Consensus 322 ~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~i~~~I~~~c~GlPLai~~ 378 (588)
.+....+.+.+++.+++.+.+..... .++ ..+..++..++|.|.....
T Consensus 156 rSRCq~~~~~~~~~~~~~~~L~~~~~------~~~---~~a~~~~~la~G~~~~Al~ 203 (334)
T PRK07993 156 RSRCRLHYLAPPPEQYALTWLSREVT------MSQ---DALLAALRLSAGAPGAALA 203 (334)
T ss_pred HhccccccCCCCCHHHHHHHHHHccC------CCH---HHHHHHHHHcCCCHHHHHH
Confidence 23446789999999999988865421 111 1245689999999975433
No 145
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=97.35 E-value=0.0072 Score=65.23 Aligned_cols=209 Identities=15% Similarity=0.117 Sum_probs=125.8
Q ss_pred CceeechhhHHHHHHHHhcCCCCCCCCeEEEEEEccCCCcHHHHHHHHHccccc---cc--ccccEEEEEEeCCcccHHH
Q 007817 169 RAVYGRDEDKARMLEMVLSDDPTTDANFCVIPIVGMAGAGKTMLAREVYNDRAV---QN--FKFDVKAWVSVSDDFDVLR 243 (588)
Q Consensus 169 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~---~~--~~f~~~~wv~v~~~~~~~~ 243 (588)
..+-+|+.|..+|...+...-.. .+.-..+-|.|-+|+|||..+..|.+.... ++ ..|+ .+.|+.-.-....+
T Consensus 396 ~sLpcRe~E~~~I~~f~~~~i~~-~~~g~~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~-yveINgm~l~~~~~ 473 (767)
T KOG1514|consen 396 ESLPCRENEFSEIEDFLRSFISD-QGLGSCMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFD-YVEINGLRLASPRE 473 (767)
T ss_pred ccccchhHHHHHHHHHHHhhcCC-CCCceeEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCcc-EEEEcceeecCHHH
Confidence 34668999999999888655431 233458999999999999999999886541 11 1243 33455555567899
Q ss_pred HHHHHHHHhcCCCCCCCCHHHHHHHHHHHhc-----CCceeEEeccccccChhHHHHhhcccCC-CCCCcEEEEeecch-
Q 007817 244 ISRALLESITSTNCDFKTLNEVQVKLRIIVD-----GKKFLLVLDDVWNENYNLWEILKAPFMA-GARNSKIIVTTCHS- 316 (588)
Q Consensus 244 ~~~~il~~l~~~~~~~~~~~~l~~~l~~~l~-----~k~~LLVlDdv~~~~~~~~~~l~~~l~~-~~~gs~ilvTTR~~- 316 (588)
++..|..++.+... ........|..+.. .+++++++|+++..-...-+.+...|.+ ..++|+++|.+=..
T Consensus 474 ~Y~~I~~~lsg~~~---~~~~al~~L~~~f~~~k~~~~~~VvLiDElD~Lvtr~QdVlYn~fdWpt~~~sKLvvi~IaNT 550 (767)
T KOG1514|consen 474 IYEKIWEALSGERV---TWDAALEALNFRFTVPKPKRSTTVVLIDELDILVTRSQDVLYNIFDWPTLKNSKLVVIAIANT 550 (767)
T ss_pred HHHHHHHhcccCcc---cHHHHHHHHHHhhccCCCCCCCEEEEeccHHHHhcccHHHHHHHhcCCcCCCCceEEEEeccc
Confidence 99999999987642 22223334444432 4568888888732111112223333433 45678876655211
Q ss_pred -hhhhh-cc-------ccceeeCCCCCHHHHHHHHHHhhcCCCCCCCChhHHHHHHHHHHHhCCCchHHHHhhhhc
Q 007817 317 -NVASM-MG-------SVEHYNLKLLSDEYCWSVFVKHAFERRDAGAHQFSKLFRKKIVAKCGGLPLAVSTLGGLL 383 (588)
Q Consensus 317 -~v~~~-~~-------~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~i~~~I~~~c~GlPLai~~~~~~L 383 (588)
+.... +. ....+.+.|-+.++-.++...+..+... -.....+-++++|+.-.|-.-.|+.+.-+..
T Consensus 551 mdlPEr~l~nrvsSRlg~tRi~F~pYth~qLq~Ii~~RL~~~~~-f~~~aielvarkVAavSGDaRraldic~RA~ 625 (767)
T KOG1514|consen 551 MDLPERLLMNRVSSRLGLTRICFQPYTHEQLQEIISARLKGLDA-FENKAIELVARKVAAVSGDARRALDICRRAA 625 (767)
T ss_pred ccCHHHHhccchhhhccceeeecCCCCHHHHHHHHHHhhcchhh-cchhHHHHHHHHHHhccccHHHHHHHHHHHH
Confidence 11111 10 2245777888888888888777644322 2344555566777776666666666554443
No 146
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=97.34 E-value=0.00051 Score=64.42 Aligned_cols=130 Identities=19% Similarity=0.284 Sum_probs=65.8
Q ss_pred echhhHHHHHHHHhcCCCCCCCCeEEEEEEccCCCcHHHHHHHHHcccccccccccEEEEEEeC----Ccc-----cHHH
Q 007817 173 GRDEDKARMLEMVLSDDPTTDANFCVIPIVGMAGAGKTMLAREVYNDRAVQNFKFDVKAWVSVS----DDF-----DVLR 243 (588)
Q Consensus 173 GR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~wv~v~----~~~-----~~~~ 243 (588)
.+..+....++.|... .++.+.|++|.|||.||....-+.-..+ .|+.++++.-. +.. +..+
T Consensus 4 p~~~~Q~~~~~al~~~--------~~v~~~G~AGTGKT~LA~a~Al~~v~~g-~~~kiii~Rp~v~~~~~lGflpG~~~e 74 (205)
T PF02562_consen 4 PKNEEQKFALDALLNN--------DLVIVNGPAGTGKTFLALAAALELVKEG-EYDKIIITRPPVEAGEDLGFLPGDLEE 74 (205)
T ss_dssp --SHHHHHHHHHHHH---------SEEEEE--TTSSTTHHHHHHHHHHHHTT-S-SEEEEEE-S--TT----SS------
T ss_pred CCCHHHHHHHHHHHhC--------CeEEEECCCCCcHHHHHHHHHHHHHHhC-CCcEEEEEecCCCCccccccCCCCHHH
Confidence 4566677777777732 4899999999999999988877664445 78888776421 110 1000
Q ss_pred ----HHHHHHHHhcCCCCCCCCHHHHHHH------HHHHhcCC---ceeEEeccccccChhHHHHhhcccCCCCCCcEEE
Q 007817 244 ----ISRALLESITSTNCDFKTLNEVQVK------LRIIVDGK---KFLLVLDDVWNENYNLWEILKAPFMAGARNSKII 310 (588)
Q Consensus 244 ----~~~~il~~l~~~~~~~~~~~~l~~~------l~~~l~~k---~~LLVlDdv~~~~~~~~~~l~~~l~~~~~gs~il 310 (588)
.+.-+...+..-. .....+.+... --.+++|+ ..++|+|++++.+..++..+... .+.||+++
T Consensus 75 K~~p~~~p~~d~l~~~~-~~~~~~~~~~~~~Ie~~~~~~iRGrt~~~~~iIvDEaQN~t~~~~k~ilTR---~g~~skii 150 (205)
T PF02562_consen 75 KMEPYLRPIYDALEELF-GKEKLEELIQNGKIEIEPLAFIRGRTFDNAFIIVDEAQNLTPEELKMILTR---IGEGSKII 150 (205)
T ss_dssp ---TTTHHHHHHHTTTS--TTCHHHHHHTTSEEEEEGGGGTT--B-SEEEEE-SGGG--HHHHHHHHTT---B-TT-EEE
T ss_pred HHHHHHHHHHHHHHHHh-ChHhHHHHhhcCeEEEEehhhhcCccccceEEEEecccCCCHHHHHHHHcc---cCCCcEEE
Confidence 1111112221111 11222222210 01244564 45999999998877777666444 45789999
Q ss_pred Eeecc
Q 007817 311 VTTCH 315 (588)
Q Consensus 311 vTTR~ 315 (588)
++--.
T Consensus 151 ~~GD~ 155 (205)
T PF02562_consen 151 ITGDP 155 (205)
T ss_dssp EEE--
T ss_pred EecCc
Confidence 99844
No 147
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=97.32 E-value=0.001 Score=76.38 Aligned_cols=135 Identities=17% Similarity=0.187 Sum_probs=77.0
Q ss_pred CceeechhhHHHHHHHHhcCCC---CCCCCeEEEEEEccCCCcHHHHHHHHHcccccccccccEEEEEEeCCcccHHHHH
Q 007817 169 RAVYGRDEDKARMLEMVLSDDP---TTDANFCVIPIVGMAGAGKTMLAREVYNDRAVQNFKFDVKAWVSVSDDFDVLRIS 245 (588)
Q Consensus 169 ~~~vGR~~e~~~l~~~L~~~~~---~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~ 245 (588)
..++|.+..++.+.+.+..... .......++.++|++|+|||.||+.+....... ....+-++++.-....
T Consensus 566 ~~v~GQ~~Av~~v~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKT~lA~~La~~l~~~---~~~~~~~dmse~~~~~--- 639 (852)
T TIGR03345 566 ERVIGQDHALEAIAERIRTARAGLEDPRKPLGVFLLVGPSGVGKTETALALAELLYGG---EQNLITINMSEFQEAH--- 639 (852)
T ss_pred CeEcChHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCCCHHHHHHHHHHHHhCC---CcceEEEeHHHhhhhh---
Confidence 4689999999999988864311 022345689999999999999999887754221 1122222332211111
Q ss_pred HHHHHHhcCCCCC---CCCHHHHHHHHHHHhcCCceeEEeccccccChhHHHHhhcccCCCC-----------CCcEEEE
Q 007817 246 RALLESITSTNCD---FKTLNEVQVKLRIIVDGKKFLLVLDDVWNENYNLWEILKAPFMAGA-----------RNSKIIV 311 (588)
Q Consensus 246 ~~il~~l~~~~~~---~~~~~~l~~~l~~~l~~k~~LLVlDdv~~~~~~~~~~l~~~l~~~~-----------~gs~ilv 311 (588)
-...+.+..++ ......+...++ +...-+|+||++...++..++.+...+..+. ..+-||+
T Consensus 640 --~~~~l~g~~~gyvg~~~~g~L~~~v~---~~p~svvllDEieka~~~v~~~Llq~ld~g~l~d~~Gr~vd~~n~iiI~ 714 (852)
T TIGR03345 640 --TVSRLKGSPPGYVGYGEGGVLTEAVR---RKPYSVVLLDEVEKAHPDVLELFYQVFDKGVMEDGEGREIDFKNTVILL 714 (852)
T ss_pred --hhccccCCCCCcccccccchHHHHHH---hCCCcEEEEechhhcCHHHHHHHHHHhhcceeecCCCcEEeccccEEEE
Confidence 11122222211 111122223333 2445699999998877777877776665442 3455667
Q ss_pred eec
Q 007817 312 TTC 314 (588)
Q Consensus 312 TTR 314 (588)
||.
T Consensus 715 TSN 717 (852)
T TIGR03345 715 TSN 717 (852)
T ss_pred eCC
Confidence 764
No 148
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.31 E-value=0.002 Score=63.04 Aligned_cols=81 Identities=15% Similarity=0.255 Sum_probs=50.7
Q ss_pred eEEEEEEccCCCcHHHHHHHHHccccccc-ccccEEEEEEeCCcccHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhc
Q 007817 196 FCVIPIVGMAGAGKTMLAREVYNDRAVQN-FKFDVKAWVSVSDDFDVLRISRALLESITSTNCDFKTLNEVQVKLRIIVD 274 (588)
Q Consensus 196 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~~-~~f~~~~wv~v~~~~~~~~~~~~il~~l~~~~~~~~~~~~l~~~l~~~l~ 274 (588)
-++|.++||+|.|||+|++.+++...++. ..|....-+.+ +...++.+...+ ....+..+..++.+.+.
T Consensus 177 NRliLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~liEi----nshsLFSKWFsE------SgKlV~kmF~kI~ELv~ 246 (423)
T KOG0744|consen 177 NRLILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQLIEI----NSHSLFSKWFSE------SGKLVAKMFQKIQELVE 246 (423)
T ss_pred eeEEEEeCCCCCChhHHHHHHHHhheeeecCccccceEEEE----ehhHHHHHHHhh------hhhHHHHHHHHHHHHHh
Confidence 47999999999999999999999886542 02222222322 223344443332 22345666777777777
Q ss_pred CCce--eEEecccc
Q 007817 275 GKKF--LLVLDDVW 286 (588)
Q Consensus 275 ~k~~--LLVlDdv~ 286 (588)
++.. .+.+|.|.
T Consensus 247 d~~~lVfvLIDEVE 260 (423)
T KOG0744|consen 247 DRGNLVFVLIDEVE 260 (423)
T ss_pred CCCcEEEEEeHHHH
Confidence 6654 45578884
No 149
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=97.31 E-value=0.0014 Score=75.64 Aligned_cols=126 Identities=17% Similarity=0.215 Sum_probs=73.1
Q ss_pred CceeechhhHHHHHHHHhcCCCC---CCCCeEEEEEEccCCCcHHHHHHHHHcccccccccccEEEEEEeCCcccHHHHH
Q 007817 169 RAVYGRDEDKARMLEMVLSDDPT---TDANFCVIPIVGMAGAGKTMLAREVYNDRAVQNFKFDVKAWVSVSDDFDVLRIS 245 (588)
Q Consensus 169 ~~~vGR~~e~~~l~~~L~~~~~~---~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~ 245 (588)
..++|.+..++.+...+.....+ ......++.++|++|+|||++|+.+....... -...+.++++.-.....
T Consensus 565 ~~v~GQ~~av~~v~~~i~~~~~gl~~~~~p~~~~Lf~Gp~GvGKt~lA~~La~~l~~~---~~~~i~~d~s~~~~~~~-- 639 (852)
T TIGR03346 565 ERVVGQDEAVEAVSDAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELAKALAEFLFDD---EDAMVRIDMSEYMEKHS-- 639 (852)
T ss_pred cccCCChHHHHHHHHHHHHHhccCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHhcCC---CCcEEEEechhhcccch--
Confidence 45899999999999988753210 12234678899999999999999998754321 12233444443222111
Q ss_pred HHHHHHhcCCCCCCCCHHHHHHHHHHHhcCCc-eeEEeccccccChhHHHHhhcccCCC
Q 007817 246 RALLESITSTNCDFKTLNEVQVKLRIIVDGKK-FLLVLDDVWNENYNLWEILKAPFMAG 303 (588)
Q Consensus 246 ~~il~~l~~~~~~~~~~~~l~~~l~~~l~~k~-~LLVlDdv~~~~~~~~~~l~~~l~~~ 303 (588)
...+.+..++....++ ...+...++.++ .+|+||++...+...++.+...+..+
T Consensus 640 ---~~~l~g~~~g~~g~~~-~g~l~~~v~~~p~~vlllDeieka~~~v~~~Ll~~l~~g 694 (852)
T TIGR03346 640 ---VARLIGAPPGYVGYEE-GGQLTEAVRRKPYSVVLFDEVEKAHPDVFNVLLQVLDDG 694 (852)
T ss_pred ---HHHhcCCCCCccCccc-ccHHHHHHHcCCCcEEEEeccccCCHHHHHHHHHHHhcC
Confidence 1122122111111110 112333333333 48999999888888888887776443
No 150
>PRK12377 putative replication protein; Provisional
Probab=97.30 E-value=0.00043 Score=67.32 Aligned_cols=100 Identities=23% Similarity=0.155 Sum_probs=55.8
Q ss_pred EEEEEEccCCCcHHHHHHHHHcccccccccccEEEEEEeCCcccHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhcCC
Q 007817 197 CVIPIVGMAGAGKTMLAREVYNDRAVQNFKFDVKAWVSVSDDFDVLRISRALLESITSTNCDFKTLNEVQVKLRIIVDGK 276 (588)
Q Consensus 197 ~vv~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~il~~l~~~~~~~~~~~~l~~~l~~~l~~k 276 (588)
..+.|+|.+|+|||+||..+++....++ -.++++++. +++..+-..... ...... .+.. + .+
T Consensus 102 ~~l~l~G~~GtGKThLa~AIa~~l~~~g---~~v~~i~~~------~l~~~l~~~~~~----~~~~~~---~l~~-l-~~ 163 (248)
T PRK12377 102 TNFVFSGKPGTGKNHLAAAIGNRLLAKG---RSVIVVTVP------DVMSRLHESYDN----GQSGEK---FLQE-L-CK 163 (248)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcC---CCeEEEEHH------HHHHHHHHHHhc----cchHHH---HHHH-h-cC
Confidence 5789999999999999999999775432 234555553 344444333211 111122 1222 2 45
Q ss_pred ceeEEeccccccChhHHH--HhhcccCCC-CCCcEEEEeec
Q 007817 277 KFLLVLDDVWNENYNLWE--ILKAPFMAG-ARNSKIIVTTC 314 (588)
Q Consensus 277 ~~LLVlDdv~~~~~~~~~--~l~~~l~~~-~~gs~ilvTTR 314 (588)
.-||||||+.......|. .+...+... .+.-.+||||.
T Consensus 164 ~dLLiIDDlg~~~~s~~~~~~l~~ii~~R~~~~~ptiitSN 204 (248)
T PRK12377 164 VDLLVLDEIGIQRETKNEQVVLNQIIDRRTASMRSVGMLTN 204 (248)
T ss_pred CCEEEEcCCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEcC
Confidence 679999999544333443 233333221 12234788874
No 151
>PRK12608 transcription termination factor Rho; Provisional
Probab=97.28 E-value=0.0022 Score=65.35 Aligned_cols=102 Identities=18% Similarity=0.199 Sum_probs=65.5
Q ss_pred hHHHHHHHHhcCCCCCCCCeEEEEEEccCCCcHHHHHHHHHcccccccccccE-EEEEEeCCc-ccHHHHHHHHHHHhcC
Q 007817 177 DKARMLEMVLSDDPTTDANFCVIPIVGMAGAGKTMLAREVYNDRAVQNFKFDV-KAWVSVSDD-FDVLRISRALLESITS 254 (588)
Q Consensus 177 e~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~-~~wv~v~~~-~~~~~~~~~il~~l~~ 254 (588)
-..++++.+..-. .-.-+.|+|.+|+|||||++.+++..... +-+. ++|+.+.+. ..+.++++.+...+..
T Consensus 119 ~~~RvID~l~PiG-----kGQR~LIvG~pGtGKTTLl~~la~~i~~~--~~dv~~vv~lIgER~~EV~df~~~i~~~Vva 191 (380)
T PRK12608 119 LSMRVVDLVAPIG-----KGQRGLIVAPPRAGKTVLLQQIAAAVAAN--HPEVHLMVLLIDERPEEVTDMRRSVKGEVYA 191 (380)
T ss_pred hhHhhhhheeecC-----CCceEEEECCCCCCHHHHHHHHHHHHHhc--CCCceEEEEEecCCCCCHHHHHHHHhhhEEe
Confidence 3455777776432 22466899999999999999998865432 3344 467667644 5678888888887765
Q ss_pred CCCCCCCHHH-----HHHHHHHHh--cCCceeEEeccc
Q 007817 255 TNCDFKTLNE-----VQVKLRIIV--DGKKFLLVLDDV 285 (588)
Q Consensus 255 ~~~~~~~~~~-----l~~~l~~~l--~~k~~LLVlDdv 285 (588)
...+...... ......+++ ++++.+||+|++
T Consensus 192 st~de~~~~~~~v~~~~~~~Ae~f~~~GkdVVLvlDsl 229 (380)
T PRK12608 192 STFDRPPDEHIRVAELVLERAKRLVEQGKDVVILLDSL 229 (380)
T ss_pred ecCCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEEeCc
Confidence 4322222111 111222222 589999999999
No 152
>PRK06526 transposase; Provisional
Probab=97.25 E-value=0.00055 Score=67.04 Aligned_cols=100 Identities=21% Similarity=0.191 Sum_probs=52.7
Q ss_pred EEEEEEccCCCcHHHHHHHHHcccccccccccEEEEEEeCCcccHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhcCC
Q 007817 197 CVIPIVGMAGAGKTMLAREVYNDRAVQNFKFDVKAWVSVSDDFDVLRISRALLESITSTNCDFKTLNEVQVKLRIIVDGK 276 (588)
Q Consensus 197 ~vv~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~il~~l~~~~~~~~~~~~l~~~l~~~l~~k 276 (588)
..+.|+|++|+|||+||..+.+.....+ +. +.|+ +..++...+..... .... ...+..+ .+
T Consensus 99 ~nlll~Gp~GtGKThLa~al~~~a~~~g--~~-v~f~------t~~~l~~~l~~~~~-----~~~~---~~~l~~l--~~ 159 (254)
T PRK06526 99 ENVVFLGPPGTGKTHLAIGLGIRACQAG--HR-VLFA------TAAQWVARLAAAHH-----AGRL---QAELVKL--GR 159 (254)
T ss_pred ceEEEEeCCCCchHHHHHHHHHHHHHCC--Cc-hhhh------hHHHHHHHHHHHHh-----cCcH---HHHHHHh--cc
Confidence 4689999999999999999987654332 22 2332 23334444433211 1111 1223322 24
Q ss_pred ceeEEeccccccChhHH--HHhhcccCC-CCCCcEEEEeecch
Q 007817 277 KFLLVLDDVWNENYNLW--EILKAPFMA-GARNSKIIVTTCHS 316 (588)
Q Consensus 277 ~~LLVlDdv~~~~~~~~--~~l~~~l~~-~~~gs~ilvTTR~~ 316 (588)
.-||||||+.......+ +.+...+.. ...++ +|+||..+
T Consensus 160 ~dlLIIDD~g~~~~~~~~~~~L~~li~~r~~~~s-~IitSn~~ 201 (254)
T PRK06526 160 YPLLIVDEVGYIPFEPEAANLFFQLVSSRYERAS-LIVTSNKP 201 (254)
T ss_pred CCEEEEcccccCCCCHHHHHHHHHHHHHHHhcCC-EEEEcCCC
Confidence 56999999964322122 223332221 12244 88888643
No 153
>PRK04132 replication factor C small subunit; Provisional
Probab=97.24 E-value=0.0063 Score=68.86 Aligned_cols=157 Identities=12% Similarity=-0.031 Sum_probs=97.9
Q ss_pred cCCCcHHHHHHHHHcccccccccccEEEEEEeCCcccHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhcCCceeEEec
Q 007817 204 MAGAGKTMLAREVYNDRAVQNFKFDVKAWVSVSDDFDVLRISRALLESITSTNCDFKTLNEVQVKLRIIVDGKKFLLVLD 283 (588)
Q Consensus 204 ~gGiGKTtLA~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~il~~l~~~~~~~~~~~~l~~~l~~~l~~k~~LLVlD 283 (588)
|.++||||+|..++++.-..+ .-...+-+++++...... .++++..+....+. -..+.-++|||
T Consensus 574 Ph~lGKTT~A~ala~~l~g~~-~~~~~lElNASd~rgid~-IR~iIk~~a~~~~~--------------~~~~~KVvIID 637 (846)
T PRK04132 574 PTVLHNTTAALALARELFGEN-WRHNFLELNASDERGINV-IREKVKEFARTKPI--------------GGASFKIIFLD 637 (846)
T ss_pred CCcccHHHHHHHHHHhhhccc-ccCeEEEEeCCCcccHHH-HHHHHHHHHhcCCc--------------CCCCCEEEEEE
Confidence 778999999999999753221 112355677776544443 33333332211100 01245799999
Q ss_pred cccccChhHHHHhhcccCCCCCCcEEEEeecch-hhhhhc-cccceeeCCCCCHHHHHHHHHHhhcCCCCCCCChhHHHH
Q 007817 284 DVWNENYNLWEILKAPFMAGARNSKIIVTTCHS-NVASMM-GSVEHYNLKLLSDEYCWSVFVKHAFERRDAGAHQFSKLF 361 (588)
Q Consensus 284 dv~~~~~~~~~~l~~~l~~~~~gs~ilvTTR~~-~v~~~~-~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~i 361 (588)
+++..+....+.|+..+......+++|++|.+. .+...+ .....+.+.+++.++....+...+...+. ..+ .+.
T Consensus 638 EaD~Lt~~AQnALLk~lEep~~~~~FILi~N~~~kIi~tIrSRC~~i~F~~ls~~~i~~~L~~I~~~Egi-~i~---~e~ 713 (846)
T PRK04132 638 EADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSRCAIFRFRPLRDEDIAKRLRYIAENEGL-ELT---EEG 713 (846)
T ss_pred CcccCCHHHHHHHHHHhhCCCCCeEEEEEeCChhhCchHHhhhceEEeCCCCCHHHHHHHHHHHHHhcCC-CCC---HHH
Confidence 999888778888888877655567777766554 332222 24468999999999998888766532221 111 234
Q ss_pred HHHHHHHhCCCchHHHHhh
Q 007817 362 RKKIVAKCGGLPLAVSTLG 380 (588)
Q Consensus 362 ~~~I~~~c~GlPLai~~~~ 380 (588)
...|++.|+|.+..+..+-
T Consensus 714 L~~Ia~~s~GDlR~AIn~L 732 (846)
T PRK04132 714 LQAILYIAEGDMRRAINIL 732 (846)
T ss_pred HHHHHHHcCCCHHHHHHHH
Confidence 5679999999886554443
No 154
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=97.23 E-value=0.0028 Score=64.73 Aligned_cols=145 Identities=17% Similarity=0.155 Sum_probs=85.6
Q ss_pred eeechhhHHHHHHHHhcCCCCCCCCeEEEEEEccCCCcHHHHHHHHHcccccccc------------------cccEEEE
Q 007817 171 VYGRDEDKARMLEMVLSDDPTTDANFCVIPIVGMAGAGKTMLAREVYNDRAVQNF------------------KFDVKAW 232 (588)
Q Consensus 171 ~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~------------------~f~~~~w 232 (588)
++|-+....++..+..... .....+.++|++|+||||+|..+.+..-.... ..+.+..
T Consensus 3 ~~~~~~~~~~l~~~~~~~~----~~~halL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~le 78 (325)
T COG0470 3 LVPWQEAVKRLLVQALESG----RLPHALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPAGNHPDFLE 78 (325)
T ss_pred cccchhHHHHHHHHHHhcC----CCCceeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHhhcCCCceEE
Confidence 5666777888888877442 12346999999999999999999886542210 0122333
Q ss_pred EEeCCccc---HHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhcCCceeEEeccccccChhHHHHhhcccCCCCCCcEE
Q 007817 233 VSVSDDFD---VLRISRALLESITSTNCDFKTLNEVQVKLRIIVDGKKFLLVLDDVWNENYNLWEILKAPFMAGARNSKI 309 (588)
Q Consensus 233 v~v~~~~~---~~~~~~~il~~l~~~~~~~~~~~~l~~~l~~~l~~k~~LLVlDdv~~~~~~~~~~l~~~l~~~~~gs~i 309 (588)
++.++... ..+..+++.+....... .++.-++++|++...+.+.-+.+...+......+.+
T Consensus 79 l~~s~~~~~~i~~~~vr~~~~~~~~~~~----------------~~~~kviiidead~mt~~A~nallk~lEep~~~~~~ 142 (325)
T COG0470 79 LNPSDLRKIDIIVEQVRELAEFLSESPL----------------EGGYKVVIIDEADKLTEDAANALLKTLEEPPKNTRF 142 (325)
T ss_pred ecccccCCCcchHHHHHHHHHHhccCCC----------------CCCceEEEeCcHHHHhHHHHHHHHHHhccCCCCeEE
Confidence 33333322 12222222222211110 256779999999877776777777777766777888
Q ss_pred EEeecch-hhhhhcc-ccceeeCCCCCH
Q 007817 310 IVTTCHS-NVASMMG-SVEHYNLKLLSD 335 (588)
Q Consensus 310 lvTTR~~-~v~~~~~-~~~~~~l~~L~~ 335 (588)
|++|... .+...+. ....+++.+.+.
T Consensus 143 il~~n~~~~il~tI~SRc~~i~f~~~~~ 170 (325)
T COG0470 143 ILITNDPSKILPTIRSRCQRIRFKPPSR 170 (325)
T ss_pred EEEcCChhhccchhhhcceeeecCCchH
Confidence 8888643 2322222 335567766333
No 155
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=97.23 E-value=0.00051 Score=63.50 Aligned_cols=99 Identities=22% Similarity=0.316 Sum_probs=51.7
Q ss_pred EEEEEEccCCCcHHHHHHHHHcccccccccccEEEEEEeCCcccHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhcCC
Q 007817 197 CVIPIVGMAGAGKTMLAREVYNDRAVQNFKFDVKAWVSVSDDFDVLRISRALLESITSTNCDFKTLNEVQVKLRIIVDGK 276 (588)
Q Consensus 197 ~vv~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~il~~l~~~~~~~~~~~~l~~~l~~~l~~k 276 (588)
.-+.|+|++|+|||.||..+.+....++ + .+.|+++ .+++.. +.... ........ +.. +. +
T Consensus 48 ~~l~l~G~~G~GKThLa~ai~~~~~~~g--~-~v~f~~~------~~L~~~----l~~~~-~~~~~~~~---~~~-l~-~ 108 (178)
T PF01695_consen 48 ENLILYGPPGTGKTHLAVAIANEAIRKG--Y-SVLFITA------SDLLDE----LKQSR-SDGSYEEL---LKR-LK-R 108 (178)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHHHHHTT-----EEEEEH------HHHHHH----HHCCH-CCTTHCHH---HHH-HH-T
T ss_pred eEEEEEhhHhHHHHHHHHHHHHHhccCC--c-ceeEeec------Cceecc----ccccc-cccchhhh---cCc-cc-c
Confidence 5699999999999999999988765433 2 3455554 233333 33221 11222222 222 22 3
Q ss_pred ceeEEeccccccChhHHHH--hhcccCCC-CCCcEEEEeecc
Q 007817 277 KFLLVLDDVWNENYNLWEI--LKAPFMAG-ARNSKIIVTTCH 315 (588)
Q Consensus 277 ~~LLVlDdv~~~~~~~~~~--l~~~l~~~-~~gs~ilvTTR~ 315 (588)
.=||||||+-......|.. +...+... .++ .+||||..
T Consensus 109 ~dlLilDDlG~~~~~~~~~~~l~~ii~~R~~~~-~tIiTSN~ 149 (178)
T PF01695_consen 109 VDLLILDDLGYEPLSEWEAELLFEIIDERYERK-PTIITSNL 149 (178)
T ss_dssp SSCEEEETCTSS---HHHHHCTHHHHHHHHHT--EEEEEESS
T ss_pred ccEecccccceeeecccccccchhhhhHhhccc-CeEeeCCC
Confidence 4688899996654444432 22212111 123 57888853
No 156
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=97.22 E-value=0.00051 Score=65.91 Aligned_cols=36 Identities=28% Similarity=0.373 Sum_probs=28.6
Q ss_pred EEEEEEccCCCcHHHHHHHHHcccccccccccEEEEEEe
Q 007817 197 CVIPIVGMAGAGKTMLAREVYNDRAVQNFKFDVKAWVSV 235 (588)
Q Consensus 197 ~vv~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~wv~v 235 (588)
-.++|+|..|+|||||+..+...... .|..+++++-
T Consensus 14 fr~viIG~sGSGKT~li~~lL~~~~~---~f~~I~l~t~ 49 (241)
T PF04665_consen 14 FRMVIIGKSGSGKTTLIKSLLYYLRH---KFDHIFLITP 49 (241)
T ss_pred ceEEEECCCCCCHHHHHHHHHHhhcc---cCCEEEEEec
Confidence 46789999999999999999876443 6777776654
No 157
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=97.21 E-value=0.00032 Score=71.12 Aligned_cols=53 Identities=17% Similarity=0.272 Sum_probs=44.0
Q ss_pred ceeechhhHHHHHHHHhcCCCCCCCCeEEEEEEccCCCcHHHHHHHHHccccc
Q 007817 170 AVYGRDEDKARMLEMVLSDDPTTDANFCVIPIVGMAGAGKTMLAREVYNDRAV 222 (588)
Q Consensus 170 ~~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~ 222 (588)
.++|-++.++++++++...........++++|+|++|+||||||+.+.+....
T Consensus 52 ~~~G~~~~i~~lv~~l~~~a~g~~~~r~il~L~GPPGsGKStla~~La~~l~~ 104 (361)
T smart00763 52 DFFGMEEAIERFVNYFKSAAQGLEERKQILYLLGPVGGGKSSLVECLKRGLEE 104 (361)
T ss_pred hccCcHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 79999999999999997654322345689999999999999999999887643
No 158
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=97.19 E-value=0.007 Score=61.57 Aligned_cols=71 Identities=10% Similarity=0.071 Sum_probs=47.5
Q ss_pred CCceeEEeccccccChhHHHHhhcccCCCCCCcEEEEeecchh-hhhhc-cccceeeCCCCCHHHHHHHHHHh
Q 007817 275 GKKFLLVLDDVWNENYNLWEILKAPFMAGARNSKIIVTTCHSN-VASMM-GSVEHYNLKLLSDEYCWSVFVKH 345 (588)
Q Consensus 275 ~k~~LLVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTTR~~~-v~~~~-~~~~~~~l~~L~~~ea~~Lf~~~ 345 (588)
+++=++|+|++...+...-+.+...+.....++.+|++|.+.. +...+ .....+.+.+++.+++.+.+...
T Consensus 112 ~~~kV~iiEp~~~Ld~~a~naLLk~LEep~~~~~~Ilvth~~~~ll~ti~SRc~~~~~~~~~~~~~~~~L~~~ 184 (325)
T PRK08699 112 GGLRVILIHPAESMNLQAANSLLKVLEEPPPQVVFLLVSHAADKVLPTIKSRCRKMVLPAPSHEEALAYLRER 184 (325)
T ss_pred CCceEEEEechhhCCHHHHHHHHHHHHhCcCCCEEEEEeCChHhChHHHHHHhhhhcCCCCCHHHHHHHHHhc
Confidence 3444566788877776666666666654445566777777654 33332 23467899999999999888654
No 159
>PRK08181 transposase; Validated
Probab=97.19 E-value=0.00087 Score=66.01 Aligned_cols=101 Identities=20% Similarity=0.145 Sum_probs=54.9
Q ss_pred EEEEEEccCCCcHHHHHHHHHcccccccccccEEEEEEeCCcccHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhcCC
Q 007817 197 CVIPIVGMAGAGKTMLAREVYNDRAVQNFKFDVKAWVSVSDDFDVLRISRALLESITSTNCDFKTLNEVQVKLRIIVDGK 276 (588)
Q Consensus 197 ~vv~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~il~~l~~~~~~~~~~~~l~~~l~~~l~~k 276 (588)
..+.|+|++|+|||.||..+.+....++ ..++|+++ .+++..+.... ...+.......+ .+
T Consensus 107 ~nlll~Gp~GtGKTHLa~Aia~~a~~~g---~~v~f~~~------~~L~~~l~~a~-----~~~~~~~~l~~l-----~~ 167 (269)
T PRK08181 107 ANLLLFGPPGGGKSHLAAAIGLALIENG---WRVLFTRT------TDLVQKLQVAR-----RELQLESAIAKL-----DK 167 (269)
T ss_pred ceEEEEecCCCcHHHHHHHHHHHHHHcC---CceeeeeH------HHHHHHHHHHH-----hCCcHHHHHHHH-----hc
Confidence 3589999999999999999988654322 23445543 34444443321 112222222222 23
Q ss_pred ceeEEeccccccChhHH--HHhhcccCCCCCCcEEEEeecch
Q 007817 277 KFLLVLDDVWNENYNLW--EILKAPFMAGARNSKIIVTTCHS 316 (588)
Q Consensus 277 ~~LLVlDdv~~~~~~~~--~~l~~~l~~~~~gs~ilvTTR~~ 316 (588)
.-||||||+.......| ..+...+...-.+..+||||..+
T Consensus 168 ~dLLIIDDlg~~~~~~~~~~~Lf~lin~R~~~~s~IiTSN~~ 209 (269)
T PRK08181 168 FDLLILDDLAYVTKDQAETSVLFELISARYERRSILITANQP 209 (269)
T ss_pred CCEEEEeccccccCCHHHHHHHHHHHHHHHhCCCEEEEcCCC
Confidence 56999999954432222 22333333211123588888653
No 160
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=97.18 E-value=0.002 Score=70.25 Aligned_cols=172 Identities=19% Similarity=0.166 Sum_probs=88.4
Q ss_pred ceeechhhHHHHHHHHhcCCCCCCCCeEEEEEEccCCCcHHHHHHHHHccccccc-cccc-EEEEEEeCC---cccHHHH
Q 007817 170 AVYGRDEDKARMLEMVLSDDPTTDANFCVIPIVGMAGAGKTMLAREVYNDRAVQN-FKFD-VKAWVSVSD---DFDVLRI 244 (588)
Q Consensus 170 ~~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~-~~f~-~~~wv~v~~---~~~~~~~ 244 (588)
+++|.+..++.+...+... ...-+.|+|++|+|||++|+.+++...... ..|. ..-|+.+.- .++...+
T Consensus 66 ~iiGqs~~i~~l~~al~~~------~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~s~~~~~~~fi~id~~~~~~~~~~~ 139 (531)
T TIGR02902 66 EIIGQEEGIKALKAALCGP------NPQHVIIYGPPGVGKTAAARLVLEEAKKNPASPFKEGAAFVEIDATTARFDERGI 139 (531)
T ss_pred HeeCcHHHHHHHHHHHhCC------CCceEEEECCCCCCHHHHHHHHHHHhhhccCCCcCCCCCEEEEccccccCCcccc
Confidence 5899999999998876543 234568999999999999999976432110 0122 112333221 1222112
Q ss_pred HHHHHHHhcCCC-CCCCCH---HHHHHHHHHHhcCCceeEEeccccccChhHHHHhhcccCCC-----------------
Q 007817 245 SRALLESITSTN-CDFKTL---NEVQVKLRIIVDGKKFLLVLDDVWNENYNLWEILKAPFMAG----------------- 303 (588)
Q Consensus 245 ~~~il~~l~~~~-~~~~~~---~~l~~~l~~~l~~k~~LLVlDdv~~~~~~~~~~l~~~l~~~----------------- 303 (588)
...++.....+. ...... .....+....-+...=+|+||++...+....+.|...+...
T Consensus 140 ~~~li~~~~~p~~~~~~~~g~~g~~~~~~G~l~~a~gG~L~IdEI~~L~~~~q~~LL~~Le~~~~~~~~~~~~~~~~~~~ 219 (531)
T TIGR02902 140 ADPLIGSVHDPIYQGAGPLGIAGIPQPKPGAVTRAHGGVLFIDEIGELHPVQMNKLLKVLEDRKVFLDSAYYNSENPNIP 219 (531)
T ss_pred chhhcCCcccchhccccccccCCcccccCchhhccCCcEEEEechhhCCHHHHHHHHHHHHhCeeeeccccccccCcccc
Confidence 112211110000 000000 00000000011234468999999887766666665433211
Q ss_pred -----------CCCcEEEEee-cchh-hhhhc-cccceeeCCCCCHHHHHHHHHHhhc
Q 007817 304 -----------ARNSKIIVTT-CHSN-VASMM-GSVEHYNLKLLSDEYCWSVFVKHAF 347 (588)
Q Consensus 304 -----------~~gs~ilvTT-R~~~-v~~~~-~~~~~~~l~~L~~~ea~~Lf~~~a~ 347 (588)
....++|.+| ++.. +.... .....+.+.+|+.++-.+++.+.+-
T Consensus 220 ~~~~~~~~~~~~~d~rlI~ATt~~p~~L~paLrsR~~~I~f~pL~~eei~~Il~~~a~ 277 (531)
T TIGR02902 220 SHIHDIFQNGLPADFRLIGATTRNPEEIPPALRSRCVEIFFRPLLDEEIKEIAKNAAE 277 (531)
T ss_pred cchhhhcccCcccceEEEEEecCCcccCChHHhhhhheeeCCCCCHHHHHHHHHHHHH
Confidence 1123666554 4332 11111 1235688999999999999988764
No 161
>PRK04296 thymidine kinase; Provisional
Probab=97.17 E-value=0.0009 Score=62.67 Aligned_cols=114 Identities=9% Similarity=-0.056 Sum_probs=63.7
Q ss_pred EEEEEEccCCCcHHHHHHHHHcccccccccccEEEEEEeCCcccHHHHHHHHHHHhcCCCCC--CCCHHHHHHHHHHHhc
Q 007817 197 CVIPIVGMAGAGKTMLAREVYNDRAVQNFKFDVKAWVSVSDDFDVLRISRALLESITSTNCD--FKTLNEVQVKLRIIVD 274 (588)
Q Consensus 197 ~vv~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~il~~l~~~~~~--~~~~~~l~~~l~~~l~ 274 (588)
.++.|+|+.|.||||+|..+.......+ ..++.+. ..++.......++..++..... .....++...+.+ ..
T Consensus 3 ~i~litG~~GsGKTT~~l~~~~~~~~~g---~~v~i~k--~~~d~~~~~~~i~~~lg~~~~~~~~~~~~~~~~~~~~-~~ 76 (190)
T PRK04296 3 KLEFIYGAMNSGKSTELLQRAYNYEERG---MKVLVFK--PAIDDRYGEGKVVSRIGLSREAIPVSSDTDIFELIEE-EG 76 (190)
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHHHcC---CeEEEEe--ccccccccCCcEecCCCCcccceEeCChHHHHHHHHh-hC
Confidence 4788999999999999998888664322 2233331 1112122233445555432211 2334455555544 33
Q ss_pred CCceeEEeccccccChhHHHHhhcccCCCCCCcEEEEeecchhh
Q 007817 275 GKKFLLVLDDVWNENYNLWEILKAPFMAGARNSKIIVTTCHSNV 318 (588)
Q Consensus 275 ~k~~LLVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTTR~~~v 318 (588)
++.-+||+|.+.--+.++...+...+. ..|..|++|.++.+.
T Consensus 77 ~~~dvviIDEaq~l~~~~v~~l~~~l~--~~g~~vi~tgl~~~~ 118 (190)
T PRK04296 77 EKIDCVLIDEAQFLDKEQVVQLAEVLD--DLGIPVICYGLDTDF 118 (190)
T ss_pred CCCCEEEEEccccCCHHHHHHHHHHHH--HcCCeEEEEecCccc
Confidence 455699999996543332333333322 347889999987543
No 162
>CHL00095 clpC Clp protease ATP binding subunit
Probab=97.16 E-value=0.0024 Score=73.56 Aligned_cols=124 Identities=16% Similarity=0.236 Sum_probs=71.8
Q ss_pred CceeechhhHHHHHHHHhcCCC---CCCCCeEEEEEEccCCCcHHHHHHHHHcccccccccccEEEEEEeCCcccHHHHH
Q 007817 169 RAVYGRDEDKARMLEMVLSDDP---TTDANFCVIPIVGMAGAGKTMLAREVYNDRAVQNFKFDVKAWVSVSDDFDVLRIS 245 (588)
Q Consensus 169 ~~~vGR~~e~~~l~~~L~~~~~---~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~ 245 (588)
..++|-+..++.+.+.+..... ..+....++.++|+.|+|||+||+.+.+..-... ...+-++.+.-.+...+.
T Consensus 509 ~~v~GQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKt~lA~~LA~~l~~~~---~~~~~~d~s~~~~~~~~~ 585 (821)
T CHL00095 509 KRIIGQDEAVVAVSKAIRRARVGLKNPNRPIASFLFSGPTGVGKTELTKALASYFFGSE---DAMIRLDMSEYMEKHTVS 585 (821)
T ss_pred CcCcChHHHHHHHHHHHHHHhhcccCCCCCceEEEEECCCCCcHHHHHHHHHHHhcCCc---cceEEEEchhccccccHH
Confidence 4688999999999888753221 0122345678999999999999999987542111 122333443322211111
Q ss_pred HHHHHHhcCCCC--CCCCHHHHHHHHHHHhcCCc-eeEEeccccccChhHHHHhhcccCCC
Q 007817 246 RALLESITSTNC--DFKTLNEVQVKLRIIVDGKK-FLLVLDDVWNENYNLWEILKAPFMAG 303 (588)
Q Consensus 246 ~~il~~l~~~~~--~~~~~~~l~~~l~~~l~~k~-~LLVlDdv~~~~~~~~~~l~~~l~~~ 303 (588)
+ -++.+.. +..... .+.+.++.++ .+++||++...+...++.+...+..+
T Consensus 586 ~----l~g~~~gyvg~~~~~----~l~~~~~~~p~~VvllDeieka~~~v~~~Llq~le~g 638 (821)
T CHL00095 586 K----LIGSPPGYVGYNEGG----QLTEAVRKKPYTVVLFDEIEKAHPDIFNLLLQILDDG 638 (821)
T ss_pred H----hcCCCCcccCcCccc----hHHHHHHhCCCeEEEECChhhCCHHHHHHHHHHhccC
Confidence 1 1121111 111122 2344444555 48899999888888888887776543
No 163
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].
Probab=97.15 E-value=0.01 Score=60.69 Aligned_cols=46 Identities=17% Similarity=0.234 Sum_probs=35.6
Q ss_pred hhhHHHHHHHHhcCCCCCCCCeEEEEEEccCCCcHHHHHHHHHcccccc
Q 007817 175 DEDKARMLEMVLSDDPTTDANFCVIPIVGMAGAGKTMLAREVYNDRAVQ 223 (588)
Q Consensus 175 ~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 223 (588)
+.-.+.|.+.+.... .....+|+|.|.=|+|||++.+.+.+.....
T Consensus 2 ~~~a~~la~~I~~~~---~~~~~~IgL~G~WGsGKSs~l~~l~~~L~~~ 47 (325)
T PF07693_consen 2 KPYAKALAEIIKNPD---SDDPFVIGLYGEWGSGKSSFLNMLKEELKED 47 (325)
T ss_pred hHHHHHHHHHHhccC---CCCCeEEEEECCCCCCHHHHHHHHHHHHhcc
Confidence 344566777776553 1467899999999999999999998877654
No 164
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=97.13 E-value=0.0049 Score=56.06 Aligned_cols=123 Identities=20% Similarity=0.273 Sum_probs=73.4
Q ss_pred EEEEEEccCCCcHHHHHHHHHcccccccccccEEEEEEe---C------------------Ccc----------------
Q 007817 197 CVIPIVGMAGAGKTMLAREVYNDRAVQNFKFDVKAWVSV---S------------------DDF---------------- 239 (588)
Q Consensus 197 ~vv~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~wv~v---~------------------~~~---------------- 239 (588)
..+.|+|++|.|||||.+.+|...+... ..+|+.- + +++
T Consensus 29 ef~fl~GpSGAGKSTllkLi~~~e~pt~----G~i~~~~~dl~~l~~~~iP~LRR~IGvVFQD~rLL~~~tvyeNVA~pL 104 (223)
T COG2884 29 EFVFLTGPSGAGKSTLLKLIYGEERPTR----GKILVNGHDLSRLKGREIPFLRRQIGVVFQDFRLLPDRTVYENVALPL 104 (223)
T ss_pred eEEEEECCCCCCHHHHHHHHHhhhcCCC----ceEEECCeecccccccccchhhheeeeEeeeccccccchHhhhhhhhh
Confidence 5889999999999999999998766432 3455421 0 010
Q ss_pred -----cHHHHHHH---HHHHhcCCC------CCCCCHHHHHHHHHHHhcCCceeEEecccc-c-cChhHHHHhhcccCCC
Q 007817 240 -----DVLRISRA---LLESITSTN------CDFKTLNEVQVKLRIIVDGKKFLLVLDDVW-N-ENYNLWEILKAPFMAG 303 (588)
Q Consensus 240 -----~~~~~~~~---il~~l~~~~------~~~~~~~~l~~~l~~~l~~k~~LLVlDdv~-~-~~~~~~~~l~~~l~~~ 303 (588)
...++-+. .++..+... ...+..++....+.+.+-+++-+|+=|.-- + +....|+.+.-.-.-+
T Consensus 105 ~v~G~~~~~i~~rV~~~L~~VgL~~k~~~lP~~LSGGEQQRvaIARAiV~~P~vLlADEPTGNLDp~~s~~im~lfeein 184 (223)
T COG2884 105 RVIGKPPREIRRRVSEVLDLVGLKHKARALPSQLSGGEQQRVAIARAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEIN 184 (223)
T ss_pred hccCCCHHHHHHHHHHHHHHhccchhhhcCccccCchHHHHHHHHHHHccCCCeEeecCCCCCCChHHHHHHHHHHHHHh
Confidence 11222222 222222211 122333444556777778889999988531 1 2234566544333335
Q ss_pred CCCcEEEEeecchhhhhhcc
Q 007817 304 ARNSKIIVTTCHSNVASMMG 323 (588)
Q Consensus 304 ~~gs~ilvTTR~~~v~~~~~ 323 (588)
..|..||++|.+.+....+.
T Consensus 185 r~GtTVl~ATHd~~lv~~~~ 204 (223)
T COG2884 185 RLGTTVLMATHDLELVNRMR 204 (223)
T ss_pred hcCcEEEEEeccHHHHHhcc
Confidence 57999999999998877654
No 165
>PRK08939 primosomal protein DnaI; Reviewed
Probab=97.13 E-value=0.0025 Score=64.20 Aligned_cols=121 Identities=20% Similarity=0.262 Sum_probs=69.7
Q ss_pred echhhHHHHHHHHhcCCCCCCCCeEEEEEEccCCCcHHHHHHHHHcccccccccccEEEEEEeCCcccHHHHHHHHHHHh
Q 007817 173 GRDEDKARMLEMVLSDDPTTDANFCVIPIVGMAGAGKTMLAREVYNDRAVQNFKFDVKAWVSVSDDFDVLRISRALLESI 252 (588)
Q Consensus 173 GR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~il~~l 252 (588)
+|..-.....+++..-.. .....-+.|+|..|+|||.||..+++....++ +. +.+++++ .++..+-...
T Consensus 135 ~~~~~~~~~~~fi~~~~~--~~~~~gl~L~G~~G~GKThLa~Aia~~l~~~g--~~-v~~~~~~------~l~~~lk~~~ 203 (306)
T PRK08939 135 DRLDALMAALDFLEAYPP--GEKVKGLYLYGDFGVGKSYLLAAIANELAKKG--VS-STLLHFP------EFIRELKNSI 203 (306)
T ss_pred HHHHHHHHHHHHHHHhhc--cCCCCeEEEECCCCCCHHHHHHHHHHHHHHcC--CC-EEEEEHH------HHHHHHHHHH
Confidence 444445555566543221 12345789999999999999999999876432 33 4455543 4455554444
Q ss_pred cCCCCCCCCHHHHHHHHHHHhcCCceeEEeccccccChhHHHH--hhccc-CCC-CCCcEEEEeec
Q 007817 253 TSTNCDFKTLNEVQVKLRIIVDGKKFLLVLDDVWNENYNLWEI--LKAPF-MAG-ARNSKIIVTTC 314 (588)
Q Consensus 253 ~~~~~~~~~~~~l~~~l~~~l~~k~~LLVlDdv~~~~~~~~~~--l~~~l-~~~-~~gs~ilvTTR 314 (588)
.. .+... .+.. + .+.=||||||+..+....|.. +...+ ... ..+-.+|+||.
T Consensus 204 ~~-----~~~~~---~l~~-l-~~~dlLiIDDiG~e~~s~~~~~~ll~~Il~~R~~~~~~ti~TSN 259 (306)
T PRK08939 204 SD-----GSVKE---KIDA-V-KEAPVLMLDDIGAEQMSSWVRDEVLGVILQYRMQEELPTFFTSN 259 (306)
T ss_pred hc-----CcHHH---HHHH-h-cCCCEEEEecCCCccccHHHHHHHHHHHHHHHHHCCCeEEEECC
Confidence 21 12222 2222 2 346699999997665566753 43333 222 23456888884
No 166
>PRK07952 DNA replication protein DnaC; Validated
Probab=97.12 E-value=0.0024 Score=62.02 Aligned_cols=102 Identities=17% Similarity=0.183 Sum_probs=56.9
Q ss_pred eEEEEEEccCCCcHHHHHHHHHcccccccccccEEEEEEeCCcccHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhcC
Q 007817 196 FCVIPIVGMAGAGKTMLAREVYNDRAVQNFKFDVKAWVSVSDDFDVLRISRALLESITSTNCDFKTLNEVQVKLRIIVDG 275 (588)
Q Consensus 196 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~il~~l~~~~~~~~~~~~l~~~l~~~l~~ 275 (588)
...+.++|.+|+|||+||..+++.....+ ..++++++ .+++..+-.... . ...+.+. +.+.+.
T Consensus 99 ~~~~~l~G~~GtGKThLa~aia~~l~~~g---~~v~~it~------~~l~~~l~~~~~-~--~~~~~~~----~l~~l~- 161 (244)
T PRK07952 99 IASFIFSGKPGTGKNHLAAAICNELLLRG---KSVLIITV------ADIMSAMKDTFS-N--SETSEEQ----LLNDLS- 161 (244)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHhcC---CeEEEEEH------HHHHHHHHHHHh-h--ccccHHH----HHHHhc-
Confidence 34788999999999999999999765432 24455543 334444433331 1 1112222 222233
Q ss_pred CceeEEeccccccChhHHHH--hhcccCCC-CCCcEEEEeec
Q 007817 276 KKFLLVLDDVWNENYNLWEI--LKAPFMAG-ARNSKIIVTTC 314 (588)
Q Consensus 276 k~~LLVlDdv~~~~~~~~~~--l~~~l~~~-~~gs~ilvTTR 314 (588)
+.=||||||+.......|.. +...+... ...-.+||||.
T Consensus 162 ~~dlLvIDDig~~~~s~~~~~~l~~Ii~~Ry~~~~~tiitSN 203 (244)
T PRK07952 162 NVDLLVIDEIGVQTESRYEKVIINQIVDRRSSSKRPTGMLTN 203 (244)
T ss_pred cCCEEEEeCCCCCCCCHHHHHHHHHHHHHHHhCCCCEEEeCC
Confidence 35589999997655555653 22222211 12344777774
No 167
>PRK09183 transposase/IS protein; Provisional
Probab=97.10 E-value=0.0014 Score=64.54 Aligned_cols=100 Identities=17% Similarity=0.148 Sum_probs=51.6
Q ss_pred EEEEEEccCCCcHHHHHHHHHcccccccccccEEEEEEeCCcccHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhcCC
Q 007817 197 CVIPIVGMAGAGKTMLAREVYNDRAVQNFKFDVKAWVSVSDDFDVLRISRALLESITSTNCDFKTLNEVQVKLRIIVDGK 276 (588)
Q Consensus 197 ~vv~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~il~~l~~~~~~~~~~~~l~~~l~~~l~~k 276 (588)
..+.|+|++|+|||+||..+.+.....+ + .+.+++. .++...+...... .. +...+... ..+
T Consensus 103 ~~v~l~Gp~GtGKThLa~al~~~a~~~G--~-~v~~~~~------~~l~~~l~~a~~~-----~~---~~~~~~~~-~~~ 164 (259)
T PRK09183 103 ENIVLLGPSGVGKTHLAIALGYEAVRAG--I-KVRFTTA------ADLLLQLSTAQRQ-----GR---YKTTLQRG-VMA 164 (259)
T ss_pred CeEEEEeCCCCCHHHHHHHHHHHHHHcC--C-eEEEEeH------HHHHHHHHHHHHC-----Cc---HHHHHHHH-hcC
Confidence 4677999999999999999977543322 2 2233332 2333333222111 11 11222222 234
Q ss_pred ceeEEeccccccChhHHH--HhhcccCCC-CCCcEEEEeecc
Q 007817 277 KFLLVLDDVWNENYNLWE--ILKAPFMAG-ARNSKIIVTTCH 315 (588)
Q Consensus 277 ~~LLVlDdv~~~~~~~~~--~l~~~l~~~-~~gs~ilvTTR~ 315 (588)
.-++||||+.......+. .+...+... ..++ +|+||..
T Consensus 165 ~dlLiiDdlg~~~~~~~~~~~lf~li~~r~~~~s-~iiTsn~ 205 (259)
T PRK09183 165 PRLLIIDEIGYLPFSQEEANLFFQVIAKRYEKGS-MILTSNL 205 (259)
T ss_pred CCEEEEcccccCCCChHHHHHHHHHHHHHHhcCc-EEEecCC
Confidence 569999999643222222 233332211 2344 8888854
No 168
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.10 E-value=0.004 Score=58.57 Aligned_cols=121 Identities=22% Similarity=0.330 Sum_probs=72.7
Q ss_pred CCCceeechhhHHHHHHHHhcCCCCCCCCeEEEEEEccCCCcHHHHHHHHHcccccccccccEEEEEEeCCcccHHHHHH
Q 007817 167 TERAVYGRDEDKARMLEMVLSDDPTTDANFCVIPIVGMAGAGKTMLAREVYNDRAVQNFKFDVKAWVSVSDDFDVLRISR 246 (588)
Q Consensus 167 ~~~~~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~ 246 (588)
+-..++|-+..++.|++--..--. +...--|.+||--|+|||+|++++.+....++. + -|.|.+.
T Consensus 58 ~L~~l~Gvd~qk~~L~~NT~~F~~--G~pANnVLLwGaRGtGKSSLVKA~~~e~~~~gl----r-LVEV~k~-------- 122 (287)
T COG2607 58 DLADLVGVDRQKEALVRNTEQFAE--GLPANNVLLWGARGTGKSSLVKALLNEYADEGL----R-LVEVDKE-------- 122 (287)
T ss_pred CHHHHhCchHHHHHHHHHHHHHHc--CCcccceEEecCCCCChHHHHHHHHHHHHhcCC----e-EEEEcHH--------
Confidence 334679999888888775433221 123346789999999999999999997765431 1 2333321
Q ss_pred HHHHHhcCCCCCCCCHHHHHHHHHHHhcCCceeEEecccc-ccChhHHHHhhcccCCC---CCCcEEEEeecc
Q 007817 247 ALLESITSTNCDFKTLNEVQVKLRIIVDGKKFLLVLDDVW-NENYNLWEILKAPFMAG---ARNSKIIVTTCH 315 (588)
Q Consensus 247 ~il~~l~~~~~~~~~~~~l~~~l~~~l~~k~~LLVlDdv~-~~~~~~~~~l~~~l~~~---~~gs~ilvTTR~ 315 (588)
+..++..+...|+. ..+||+|..||+- +........++..|..+ .+...++..|.+
T Consensus 123 -----------dl~~Lp~l~~~Lr~--~~~kFIlFcDDLSFe~gd~~yK~LKs~LeG~ve~rP~NVl~YATSN 182 (287)
T COG2607 123 -----------DLATLPDLVELLRA--RPEKFILFCDDLSFEEGDDAYKALKSALEGGVEGRPANVLFYATSN 182 (287)
T ss_pred -----------HHhhHHHHHHHHhc--CCceEEEEecCCCCCCCchHHHHHHHHhcCCcccCCCeEEEEEecC
Confidence 12233333333332 3679999999984 23345667777776543 233344444433
No 169
>PRK06921 hypothetical protein; Provisional
Probab=97.09 E-value=0.0021 Score=63.47 Aligned_cols=38 Identities=21% Similarity=0.210 Sum_probs=28.5
Q ss_pred eEEEEEEccCCCcHHHHHHHHHcccccccccccEEEEEEe
Q 007817 196 FCVIPIVGMAGAGKTMLAREVYNDRAVQNFKFDVKAWVSV 235 (588)
Q Consensus 196 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~wv~v 235 (588)
...+.++|..|+|||.||..+++....+. -..+++++.
T Consensus 117 ~~~l~l~G~~G~GKThLa~aia~~l~~~~--g~~v~y~~~ 154 (266)
T PRK06921 117 KNSIALLGQPGSGKTHLLTAAANELMRKK--GVPVLYFPF 154 (266)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHhhhc--CceEEEEEH
Confidence 35789999999999999999999765431 234566664
No 170
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=97.08 E-value=0.0024 Score=57.67 Aligned_cols=40 Identities=28% Similarity=0.424 Sum_probs=30.6
Q ss_pred EEEEEccCCCcHHHHHHHHHcccccccccccEEEEEEeCCccc
Q 007817 198 VIPIVGMAGAGKTMLAREVYNDRAVQNFKFDVKAWVSVSDDFD 240 (588)
Q Consensus 198 vv~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~wv~v~~~~~ 240 (588)
++.|+|++|+||||++..+...... .-..++|++......
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~~~~---~~~~v~~~~~e~~~~ 40 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALNIAT---KGGKVVYVDIEEEIE 40 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHHHHh---cCCEEEEEECCcchH
Confidence 3689999999999999999886543 234677888776543
No 171
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=97.07 E-value=0.002 Score=61.35 Aligned_cols=48 Identities=17% Similarity=0.190 Sum_probs=36.6
Q ss_pred CeEEEEEEccCCCcHHHHHHHHHcccccccccccEEEEEEeCCcccHHHHHH
Q 007817 195 NFCVIPIVGMAGAGKTMLAREVYNDRAVQNFKFDVKAWVSVSDDFDVLRISR 246 (588)
Q Consensus 195 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~ 246 (588)
.-.++.|+|++|+|||+++.+++..... .-..++|++... ++...+.+
T Consensus 11 ~g~i~~i~G~~GsGKT~l~~~~~~~~~~---~g~~v~yi~~e~-~~~~rl~~ 58 (209)
T TIGR02237 11 RGTITQIYGPPGSGKTNICMILAVNAAR---QGKKVVYIDTEG-LSPERFKQ 58 (209)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHh---CCCeEEEEECCC-CCHHHHHH
Confidence 4589999999999999999998876532 345789999976 55554443
No 172
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.07 E-value=0.015 Score=60.63 Aligned_cols=145 Identities=17% Similarity=0.140 Sum_probs=83.1
Q ss_pred CCeEEEEEEccCCCcHHHHHHHHHcccccccccccEEEEEEeCCcccHHHHHHHHHHHhcCCCCCCCCHHHHHHHHH---
Q 007817 194 ANFCVIPIVGMAGAGKTMLAREVYNDRAVQNFKFDVKAWVSVSDDFDVLRISRALLESITSTNCDFKTLNEVQVKLR--- 270 (588)
Q Consensus 194 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~il~~l~~~~~~~~~~~~l~~~l~--- 270 (588)
.....+.+.|++|+|||+||..++... .|+.+--++..+- -..+.......++
T Consensus 536 s~lvSvLl~Gp~~sGKTaLAA~iA~~S-----~FPFvKiiSpe~m-------------------iG~sEsaKc~~i~k~F 591 (744)
T KOG0741|consen 536 SPLVSVLLEGPPGSGKTALAAKIALSS-----DFPFVKIISPEDM-------------------IGLSESAKCAHIKKIF 591 (744)
T ss_pred CcceEEEEecCCCCChHHHHHHHHhhc-----CCCeEEEeChHHc-------------------cCccHHHHHHHHHHHH
Confidence 466788899999999999999998743 4655433322111 0111222222333
Q ss_pred -HHhcCCceeEEeccccccChhHH------------HHhh---cccCCCCCCcEEEEeecchhhhhhccc----cceeeC
Q 007817 271 -IIVDGKKFLLVLDDVWNENYNLW------------EILK---APFMAGARNSKIIVTTCHSNVASMMGS----VEHYNL 330 (588)
Q Consensus 271 -~~l~~k~~LLVlDdv~~~~~~~~------------~~l~---~~l~~~~~gs~ilvTTR~~~v~~~~~~----~~~~~l 330 (588)
...+..=-.||+||+.. .-+| ..|. ...|+.++.--|+-||....+...|+- ...|.+
T Consensus 592 ~DAYkS~lsiivvDdiEr--LiD~vpIGPRfSN~vlQaL~VllK~~ppkg~kLli~~TTS~~~vL~~m~i~~~F~~~i~V 669 (744)
T KOG0741|consen 592 EDAYKSPLSIIVVDDIER--LLDYVPIGPRFSNLVLQALLVLLKKQPPKGRKLLIFGTTSRREVLQEMGILDCFSSTIHV 669 (744)
T ss_pred HHhhcCcceEEEEcchhh--hhcccccCchhhHHHHHHHHHHhccCCCCCceEEEEecccHHHHHHHcCHHHhhhheeec
Confidence 33355667899999832 1122 2222 222333333345567777788877762 357899
Q ss_pred CCCCH-HHHHHHHHHhhcCCCCCCCChhHHHHHHHHHHHh
Q 007817 331 KLLSD-EYCWSVFVKHAFERRDAGAHQFSKLFRKKIVAKC 369 (588)
Q Consensus 331 ~~L~~-~ea~~Lf~~~a~~~~~~~~~~~~~~i~~~I~~~c 369 (588)
+.++. ++..+.++..- .-.+.+.+.++++...+|
T Consensus 670 pnl~~~~~~~~vl~~~n-----~fsd~~~~~~~~~~~~~~ 704 (744)
T KOG0741|consen 670 PNLTTGEQLLEVLEELN-----IFSDDEVRAIAEQLLSKK 704 (744)
T ss_pred CccCchHHHHHHHHHcc-----CCCcchhHHHHHHHhccc
Confidence 99987 77777776543 112334455555666655
No 173
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=97.05 E-value=0.0023 Score=62.22 Aligned_cols=50 Identities=18% Similarity=0.189 Sum_probs=36.5
Q ss_pred CeEEEEEEccCCCcHHHHHHHHHccccccc---ccccEEEEEEeCCcccHHHH
Q 007817 195 NFCVIPIVGMAGAGKTMLAREVYNDRAVQN---FKFDVKAWVSVSDDFDVLRI 244 (588)
Q Consensus 195 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~---~~f~~~~wv~v~~~~~~~~~ 244 (588)
.-.++.|+|++|+|||+||.+++....... .....++|++....++..++
T Consensus 18 ~g~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~~e~~~~~~rl 70 (235)
T cd01123 18 TGSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYIDTEGTFRPERL 70 (235)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEeCCCCcCHHHH
Confidence 457999999999999999999975432211 01357899998887765444
No 174
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=97.04 E-value=0.0027 Score=61.26 Aligned_cols=46 Identities=17% Similarity=0.209 Sum_probs=35.1
Q ss_pred CeEEEEEEccCCCcHHHHHHHHHcccccccccccEEEEEEeCCcccHHHH
Q 007817 195 NFCVIPIVGMAGAGKTMLAREVYNDRAVQNFKFDVKAWVSVSDDFDVLRI 244 (588)
Q Consensus 195 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~ 244 (588)
.-.++.|+|++|+|||+||.+++..... .-..++|++.. .++...+
T Consensus 22 ~g~i~~i~G~~GsGKT~l~~~la~~~~~---~~~~v~yi~~e-~~~~~r~ 67 (225)
T PRK09361 22 RGTITQIYGPPGSGKTNICLQLAVEAAK---NGKKVIYIDTE-GLSPERF 67 (225)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHH---CCCeEEEEECC-CCCHHHH
Confidence 4579999999999999999999876543 33567899887 5554443
No 175
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=97.02 E-value=0.0052 Score=70.03 Aligned_cols=179 Identities=14% Similarity=0.119 Sum_probs=92.5
Q ss_pred CceeechhhHHHHHHHHhcCCC-------CCCCCeEEEEEEccCCCcHHHHHHHHHcccccccccccEEEEEEeCCcccH
Q 007817 169 RAVYGRDEDKARMLEMVLSDDP-------TTDANFCVIPIVGMAGAGKTMLAREVYNDRAVQNFKFDVKAWVSVSDDFDV 241 (588)
Q Consensus 169 ~~~vGR~~e~~~l~~~L~~~~~-------~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~wv~v~~~~~~ 241 (588)
.++.|.+..++++.+++...-. .+-...+-+.|+|++|+|||+||+.+++.... .| +.++.+
T Consensus 178 ~di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~laraia~~~~~---~~---i~i~~~----- 246 (733)
T TIGR01243 178 EDIGGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVANEAGA---YF---ISINGP----- 246 (733)
T ss_pred HHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHHHHHHHHhCC---eE---EEEecH-----
Confidence 3478999999998887743210 01123456889999999999999999885432 22 222211
Q ss_pred HHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhcCCceeEEeccccccC-----------hhHHHHhhcccCCC-CCCcEE
Q 007817 242 LRISRALLESITSTNCDFKTLNEVQVKLRIIVDGKKFLLVLDDVWNEN-----------YNLWEILKAPFMAG-ARNSKI 309 (588)
Q Consensus 242 ~~~~~~il~~l~~~~~~~~~~~~l~~~l~~~l~~k~~LLVlDdv~~~~-----------~~~~~~l~~~l~~~-~~gs~i 309 (588)
++ .... .......+...+.......+.+|+||++.... ......+...+... ..+..+
T Consensus 247 -~i----~~~~-----~g~~~~~l~~lf~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~Ll~~ld~l~~~~~vi 316 (733)
T TIGR01243 247 -EI----MSKY-----YGESEERLREIFKEAEENAPSIIFIDEIDAIAPKREEVTGEVEKRVVAQLLTLMDGLKGRGRVI 316 (733)
T ss_pred -HH----hccc-----ccHHHHHHHHHHHHHHhcCCcEEEeehhhhhcccccCCcchHHHHHHHHHHHHhhccccCCCEE
Confidence 11 1000 00111223333333345667899999984311 11122333333221 223334
Q ss_pred EE-eecchh-hhhhcc----ccceeeCCCCCHHHHHHHHHHhhcCCCCCCCChhHHHHHHHHHHHhCCCc
Q 007817 310 IV-TTCHSN-VASMMG----SVEHYNLKLLSDEYCWSVFVKHAFERRDAGAHQFSKLFRKKIVAKCGGLP 373 (588)
Q Consensus 310 lv-TTR~~~-v~~~~~----~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~i~~~I~~~c~GlP 373 (588)
+| ||.... +...+. -...+.+...+.++-.+++..+.-... ...... ...+++.+.|.-
T Consensus 317 vI~atn~~~~ld~al~r~gRfd~~i~i~~P~~~~R~~Il~~~~~~~~-l~~d~~----l~~la~~t~G~~ 381 (733)
T TIGR01243 317 VIGATNRPDALDPALRRPGRFDREIVIRVPDKRARKEILKVHTRNMP-LAEDVD----LDKLAEVTHGFV 381 (733)
T ss_pred EEeecCChhhcCHHHhCchhccEEEEeCCcCHHHHHHHHHHHhcCCC-CccccC----HHHHHHhCCCCC
Confidence 44 444332 211111 134677888888888888886542211 111111 345777777754
No 176
>CHL00195 ycf46 Ycf46; Provisional
Probab=97.00 E-value=0.0098 Score=63.71 Aligned_cols=159 Identities=17% Similarity=0.134 Sum_probs=82.4
Q ss_pred CceeechhhHHHHHHHHhcC----CCCCCCCeEEEEEEccCCCcHHHHHHHHHcccccccccccEEEEEEeCCcccHHHH
Q 007817 169 RAVYGRDEDKARMLEMVLSD----DPTTDANFCVIPIVGMAGAGKTMLAREVYNDRAVQNFKFDVKAWVSVSDDFDVLRI 244 (588)
Q Consensus 169 ~~~vGR~~e~~~l~~~L~~~----~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~ 244 (588)
.++-|.+.-++.+.+....- ...+-..++-|.++|++|+|||.+|+.+++.... .| +-++.+ .
T Consensus 228 ~dvgGl~~lK~~l~~~~~~~~~~~~~~gl~~pkGILL~GPpGTGKTllAkaiA~e~~~---~~---~~l~~~------~- 294 (489)
T CHL00195 228 SDIGGLDNLKDWLKKRSTSFSKQASNYGLPTPRGLLLVGIQGTGKSLTAKAIANDWQL---PL---LRLDVG------K- 294 (489)
T ss_pred HHhcCHHHHHHHHHHHHHHhhHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHhCC---CE---EEEEhH------H-
Confidence 34667766665555432110 0001234567889999999999999999986543 11 111111 1
Q ss_pred HHHHHHHhcCCCCCCCCHHHHHHHHHHHhcCCceeEEeccccccC--------hhH----HHHhhcccCCCCCCcEEEEe
Q 007817 245 SRALLESITSTNCDFKTLNEVQVKLRIIVDGKKFLLVLDDVWNEN--------YNL----WEILKAPFMAGARNSKIIVT 312 (588)
Q Consensus 245 ~~~il~~l~~~~~~~~~~~~l~~~l~~~l~~k~~LLVlDdv~~~~--------~~~----~~~l~~~l~~~~~gs~ilvT 312 (588)
+..... ..+...+...+...-...+++|+||+++..- ... ...+...+.....+.-||.|
T Consensus 295 ---l~~~~v-----Gese~~l~~~f~~A~~~~P~IL~IDEID~~~~~~~~~~d~~~~~rvl~~lL~~l~~~~~~V~vIaT 366 (489)
T CHL00195 295 ---LFGGIV-----GESESRMRQMIRIAEALSPCILWIDEIDKAFSNSESKGDSGTTNRVLATFITWLSEKKSPVFVVAT 366 (489)
T ss_pred ---hccccc-----ChHHHHHHHHHHHHHhcCCcEEEehhhhhhhccccCCCCchHHHHHHHHHHHHHhcCCCceEEEEe
Confidence 111000 0111222222222223578999999985310 001 11122222222334456667
Q ss_pred ecchhhhh-hc----cccceeeCCCCCHHHHHHHHHHhhcC
Q 007817 313 TCHSNVAS-MM----GSVEHYNLKLLSDEYCWSVFVKHAFE 348 (588)
Q Consensus 313 TR~~~v~~-~~----~~~~~~~l~~L~~~ea~~Lf~~~a~~ 348 (588)
|.+..... .+ .-...+.++.-+.++-.++|..+...
T Consensus 367 TN~~~~Ld~allR~GRFD~~i~v~lP~~~eR~~Il~~~l~~ 407 (489)
T CHL00195 367 ANNIDLLPLEILRKGRFDEIFFLDLPSLEEREKIFKIHLQK 407 (489)
T ss_pred cCChhhCCHHHhCCCcCCeEEEeCCcCHHHHHHHHHHHHhh
Confidence 76553221 11 12457888888999999999887643
No 177
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=96.99 E-value=0.0027 Score=58.08 Aligned_cols=132 Identities=19% Similarity=0.176 Sum_probs=67.0
Q ss_pred eeechhhHHHHHHHHhcCCCCCCCCeEEEEEEccCCCcHHHHHHHHHcccccccccccEEEEEEeCCcccHHHHHHHHHH
Q 007817 171 VYGRDEDKARMLEMVLSDDPTTDANFCVIPIVGMAGAGKTMLAREVYNDRAVQNFKFDVKAWVSVSDDFDVLRISRALLE 250 (588)
Q Consensus 171 ~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~il~ 250 (588)
++|....+.++.+.+..-.. ...-|.|+|..|+||+.+|+.+++....+. ..-+-|+++.- +...+..++..
T Consensus 1 liG~s~~m~~~~~~~~~~a~----~~~pVlI~GE~GtGK~~lA~~IH~~s~r~~---~pfi~vnc~~~-~~~~~e~~LFG 72 (168)
T PF00158_consen 1 LIGESPAMKRLREQAKRAAS----SDLPVLITGETGTGKELLARAIHNNSPRKN---GPFISVNCAAL-PEELLESELFG 72 (168)
T ss_dssp SS--SHHHHHHHHHHHHHTT----STS-EEEECSTTSSHHHHHHHHHHCSTTTT---S-EEEEETTTS--HHHHHHHHHE
T ss_pred CEeCCHHHHHHHHHHHHHhC----CCCCEEEEcCCCCcHHHHHHHHHHhhhccc---CCeEEEehhhh-hcchhhhhhhc
Confidence 46777888888877765432 224567999999999999999998543221 22233444432 33333333332
Q ss_pred HhcCCCCCCCC-HHHHHHHHHHHhcCCceeEEeccccccChhHHHHhhcccCC------CC-----CCcEEEEeecch
Q 007817 251 SITSTNCDFKT-LNEVQVKLRIIVDGKKFLLVLDDVWNENYNLWEILKAPFMA------GA-----RNSKIIVTTCHS 316 (588)
Q Consensus 251 ~l~~~~~~~~~-~~~l~~~l~~~l~~k~~LLVlDdv~~~~~~~~~~l~~~l~~------~~-----~gs~ilvTTR~~ 316 (588)
.-.+...+... ... .+.. -..=-|+||++.......-..|...+.. +. ...|||.||...
T Consensus 73 ~~~~~~~~~~~~~~G---~l~~---A~~GtL~Ld~I~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiI~st~~~ 144 (168)
T PF00158_consen 73 HEKGAFTGARSDKKG---LLEQ---ANGGTLFLDEIEDLPPELQAKLLRVLEEGKFTRLGSDKPVPVDVRIIASTSKD 144 (168)
T ss_dssp BCSSSSTTTSSEBEH---HHHH---TTTSEEEEETGGGS-HHHHHHHHHHHHHSEEECCTSSSEEE--EEEEEEESS-
T ss_pred cccccccccccccCC---ceee---ccceEEeecchhhhHHHHHHHHHHHHhhchhccccccccccccceEEeecCcC
Confidence 21111111111 111 1211 2344788999987666555555444321 11 256888888643
No 178
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.99 E-value=0.0091 Score=61.25 Aligned_cols=103 Identities=10% Similarity=0.119 Sum_probs=56.0
Q ss_pred CeEEEEEEccCCCcHHHHHHHHHcccccccccccEEEEEEeCCc-ccHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHh
Q 007817 195 NFCVIPIVGMAGAGKTMLAREVYNDRAVQNFKFDVKAWVSVSDD-FDVLRISRALLESITSTNCDFKTLNEVQVKLRIIV 273 (588)
Q Consensus 195 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~wv~v~~~-~~~~~~~~~il~~l~~~~~~~~~~~~l~~~l~~~l 273 (588)
..++|+|+|++|+||||++..++.....++ + .+..++.... ....+-++...+.++.+.....+...+...+...-
T Consensus 240 ~~~vI~LVGptGvGKTTTiaKLA~~L~~~G--k-kVglI~aDt~RiaAvEQLk~yae~lgipv~v~~d~~~L~~aL~~lk 316 (436)
T PRK11889 240 EVQTIALIGPTGVGKTTTLAKMAWQFHGKK--K-TVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFK 316 (436)
T ss_pred CCcEEEEECCCCCcHHHHHHHHHHHHHHcC--C-cEEEEecCCcchHHHHHHHHHhhhcCCcEEecCCHHHHHHHHHHHH
Confidence 457999999999999999999987654322 2 3334444321 12233334444444433222345556665555443
Q ss_pred cC-CceeEEeccccccC--hhHHHHhhccc
Q 007817 274 DG-KKFLLVLDDVWNEN--YNLWEILKAPF 300 (588)
Q Consensus 274 ~~-k~~LLVlDdv~~~~--~~~~~~l~~~l 300 (588)
.. +.=++++|-.-... ......+...+
T Consensus 317 ~~~~~DvVLIDTaGRs~kd~~lm~EL~~~l 346 (436)
T PRK11889 317 EEARVDYILIDTAGKNYRASETVEEMIETM 346 (436)
T ss_pred hccCCCEEEEeCccccCcCHHHHHHHHHHH
Confidence 22 23577888764322 23344444443
No 179
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=96.98 E-value=0.0082 Score=57.13 Aligned_cols=156 Identities=18% Similarity=0.175 Sum_probs=89.8
Q ss_pred CceeechhhHHH---HHHHHhcCCCCCCCCeEEEEEEccCCCcHHHHHHHHHcccccccccccEEEEEEeCCcccHHHHH
Q 007817 169 RAVYGRDEDKAR---MLEMVLSDDPTTDANFCVIPIVGMAGAGKTMLAREVYNDRAVQNFKFDVKAWVSVSDDFDVLRIS 245 (588)
Q Consensus 169 ~~~vGR~~e~~~---l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~ 245 (588)
.++||.++.+.+ |+++|..++.-++-.++-|..+|++|.|||.+|+.+.+...+- | +.+- ..
T Consensus 121 ddViGqEeAK~kcrli~~yLenPe~Fg~WAPknVLFyGppGTGKTm~Akalane~kvp---~-----l~vk-------at 185 (368)
T COG1223 121 DDVIGQEEAKRKCRLIMEYLENPERFGDWAPKNVLFYGPPGTGKTMMAKALANEAKVP---L-----LLVK-------AT 185 (368)
T ss_pred hhhhchHHHHHHHHHHHHHhhChHHhcccCcceeEEECCCCccHHHHHHHHhcccCCc---e-----EEec-------hH
Confidence 467898866543 6777776654445677899999999999999999999976542 2 1111 11
Q ss_pred HHHHHHhcCCCCCCCCHHHHHHHH-HHHhcCCceeEEeccccccC------------hhHHHHhhcccCC--CCCCcEEE
Q 007817 246 RALLESITSTNCDFKTLNEVQVKL-RIIVDGKKFLLVLDDVWNEN------------YNLWEILKAPFMA--GARNSKII 310 (588)
Q Consensus 246 ~~il~~l~~~~~~~~~~~~l~~~l-~~~l~~k~~LLVlDdv~~~~------------~~~~~~l~~~l~~--~~~gs~il 310 (588)
.-|.+.++ +.......+ ...-+.-++++.||.++--. .+..+.|+.-+.. .+.|...|
T Consensus 186 ~liGehVG-------dgar~Ihely~rA~~~aPcivFiDE~DAiaLdRryQelRGDVsEiVNALLTelDgi~eneGVvtI 258 (368)
T COG1223 186 ELIGEHVG-------DGARRIHELYERARKAAPCIVFIDELDAIALDRRYQELRGDVSEIVNALLTELDGIKENEGVVTI 258 (368)
T ss_pred HHHHHHhh-------hHHHHHHHHHHHHHhcCCeEEEehhhhhhhhhhhHHHhcccHHHHHHHHHHhccCcccCCceEEE
Confidence 11212211 111111111 22223568999999773210 1122333333322 34566666
Q ss_pred Eeecchhhhhhcc---ccceeeCCCCCHHHHHHHHHHhh
Q 007817 311 VTTCHSNVASMMG---SVEHYNLKLLSDEYCWSVFVKHA 346 (588)
Q Consensus 311 vTTR~~~v~~~~~---~~~~~~l~~L~~~ea~~Lf~~~a 346 (588)
-.|.+.+.....- -...++...-+++|-.+++..++
T Consensus 259 aaTN~p~~LD~aiRsRFEeEIEF~LP~~eEr~~ile~y~ 297 (368)
T COG1223 259 AATNRPELLDPAIRSRFEEEIEFKLPNDEERLEILEYYA 297 (368)
T ss_pred eecCChhhcCHHHHhhhhheeeeeCCChHHHHHHHHHHH
Confidence 6676665543321 22457777778888888888877
No 180
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=96.97 E-value=0.00058 Score=58.75 Aligned_cols=23 Identities=43% Similarity=0.600 Sum_probs=21.0
Q ss_pred EEEEEccCCCcHHHHHHHHHccc
Q 007817 198 VIPIVGMAGAGKTMLAREVYNDR 220 (588)
Q Consensus 198 vv~I~G~gGiGKTtLA~~v~~~~ 220 (588)
+|+|.|++|+||||+|+.+.+..
T Consensus 1 vI~I~G~~gsGKST~a~~La~~~ 23 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAERL 23 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHH
Confidence 68999999999999999999854
No 181
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=96.92 E-value=0.00049 Score=60.89 Aligned_cols=87 Identities=25% Similarity=0.236 Sum_probs=47.7
Q ss_pred EEEEccCCCcHHHHHHHHHcccccccccccEEEEEEeCCcccHHHHHHHHHHHhcCCCCCCC-CHHHHHHHHHHHhcCCc
Q 007817 199 IPIVGMAGAGKTMLAREVYNDRAVQNFKFDVKAWVSVSDDFDVLRISRALLESITSTNCDFK-TLNEVQVKLRIIVDGKK 277 (588)
Q Consensus 199 v~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~il~~l~~~~~~~~-~~~~l~~~l~~~l~~k~ 277 (588)
|.|+|++|+|||+||+.+++.... ...-+.++...+..+++...--. ..... ....+...+ .++
T Consensus 2 vlL~G~~G~GKt~l~~~la~~~~~------~~~~i~~~~~~~~~dl~g~~~~~----~~~~~~~~~~l~~a~-----~~~ 66 (139)
T PF07728_consen 2 VLLVGPPGTGKTTLARELAALLGR------PVIRINCSSDTTEEDLIGSYDPS----NGQFEFKDGPLVRAM-----RKG 66 (139)
T ss_dssp EEEEESSSSSHHHHHHHHHHHHTC------EEEEEE-TTTSTHHHHHCEEET-----TTTTCEEE-CCCTTH-----HEE
T ss_pred EEEECCCCCCHHHHHHHHHHHhhc------ceEEEEeccccccccceeeeeec----ccccccccccccccc-----cce
Confidence 679999999999999999985521 22335667666665554322111 11000 000000000 178
Q ss_pred eeEEeccccccChhHHHHhhccc
Q 007817 278 FLLVLDDVWNENYNLWEILKAPF 300 (588)
Q Consensus 278 ~LLVlDdv~~~~~~~~~~l~~~l 300 (588)
.++|||++...+...+..+...+
T Consensus 67 ~il~lDEin~a~~~v~~~L~~ll 89 (139)
T PF07728_consen 67 GILVLDEINRAPPEVLESLLSLL 89 (139)
T ss_dssp EEEEESSCGG--HHHHHTTHHHH
T ss_pred eEEEECCcccCCHHHHHHHHHHH
Confidence 99999999766655555554443
No 182
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=96.92 E-value=0.0037 Score=70.53 Aligned_cols=121 Identities=13% Similarity=0.188 Sum_probs=69.3
Q ss_pred ceeechhhHHHHHHHHhcCCC---CCCCCeEEEEEEccCCCcHHHHHHHHHcccccccccccEEEEEEeCCcccHHHHHH
Q 007817 170 AVYGRDEDKARMLEMVLSDDP---TTDANFCVIPIVGMAGAGKTMLAREVYNDRAVQNFKFDVKAWVSVSDDFDVLRISR 246 (588)
Q Consensus 170 ~~vGR~~e~~~l~~~L~~~~~---~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~ 246 (588)
.++|-+..++.|.+.+..... ........+.++|++|+|||+||+.++..... . .+.++++.......
T Consensus 459 ~ViGQ~~ai~~l~~~i~~~~~gl~~~~kp~~~~Lf~GP~GvGKT~lAk~LA~~l~~---~---~i~id~se~~~~~~--- 529 (758)
T PRK11034 459 LVFGQDKAIEALTEAIKMSRAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKALGI---E---LLRFDMSEYMERHT--- 529 (758)
T ss_pred eEeCcHHHHHHHHHHHHHHhccccCCCCCcceEEEECCCCCCHHHHHHHHHHHhCC---C---cEEeechhhccccc---
Confidence 578999988888888863211 01233567899999999999999999886521 1 22344443221111
Q ss_pred HHHHHhcCCCCCCCCHHHHHHHHHHHhcCC-ceeEEeccccccChhHHHHhhcccCC
Q 007817 247 ALLESITSTNCDFKTLNEVQVKLRIIVDGK-KFLLVLDDVWNENYNLWEILKAPFMA 302 (588)
Q Consensus 247 ~il~~l~~~~~~~~~~~~l~~~l~~~l~~k-~~LLVlDdv~~~~~~~~~~l~~~l~~ 302 (588)
...+.+.+++....+ ....+.+.++.+ ..+|+||++...+.+.++.+...+..
T Consensus 530 --~~~LiG~~~gyvg~~-~~g~L~~~v~~~p~sVlllDEieka~~~v~~~LLq~ld~ 583 (758)
T PRK11034 530 --VSRLIGAPPGYVGFD-QGGLLTDAVIKHPHAVLLLDEIEKAHPDVFNLLLQVMDN 583 (758)
T ss_pred --HHHHcCCCCCccccc-ccchHHHHHHhCCCcEEEeccHhhhhHHHHHHHHHHHhc
Confidence 122222221111000 011233333333 45999999988877777777766543
No 183
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=96.91 E-value=0.00069 Score=59.90 Aligned_cols=109 Identities=18% Similarity=0.148 Sum_probs=62.1
Q ss_pred eechhhHHHHHHHHhcCCCCCCCCeEEEEEEccCCCcHHHHHHHHHcccccccccccEEEEEEeCCcccHHHHHHHHHHH
Q 007817 172 YGRDEDKARMLEMVLSDDPTTDANFCVIPIVGMAGAGKTMLAREVYNDRAVQNFKFDVKAWVSVSDDFDVLRISRALLES 251 (588)
Q Consensus 172 vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~il~~ 251 (588)
||+...++++.+.+..-.. ....|.|+|..|+||+++|+.++.........|..+ .+..
T Consensus 1 vG~S~~~~~l~~~l~~~a~----~~~pvli~GE~GtGK~~~A~~lh~~~~~~~~~~~~~---~~~~-------------- 59 (138)
T PF14532_consen 1 VGKSPAMRRLRRQLERLAK----SSSPVLITGEPGTGKSLLARALHRYSGRANGPFIVI---DCAS-------------- 59 (138)
T ss_dssp --SCHHHHHHHHHHHHHHC----SSS-EEEECCTTSSHHHHHHCCHHTTTTCCS-CCCC---CHHC--------------
T ss_pred CCCCHHHHHHHHHHHHHhC----CCCcEEEEcCCCCCHHHHHHHHHhhcCccCCCeEEe---chhh--------------
Confidence 4666666666666654321 224678999999999999999888644321112110 0100
Q ss_pred hcCCCCCCCCHHHHHHHHHHHhcCCceeEEeccccccChhHHHHhhcccCCC-CCCcEEEEeecch
Q 007817 252 ITSTNCDFKTLNEVQVKLRIIVDGKKFLLVLDDVWNENYNLWEILKAPFMAG-ARNSKIIVTTCHS 316 (588)
Q Consensus 252 l~~~~~~~~~~~~l~~~l~~~l~~k~~LLVlDdv~~~~~~~~~~l~~~l~~~-~~gs~ilvTTR~~ 316 (588)
.+ .+.+.. -+.--|+|+|+..-+......+...+... ....|+|.||...
T Consensus 60 --------~~----~~~l~~---a~~gtL~l~~i~~L~~~~Q~~L~~~l~~~~~~~~RlI~ss~~~ 110 (138)
T PF14532_consen 60 --------LP----AELLEQ---AKGGTLYLKNIDRLSPEAQRRLLDLLKRQERSNVRLIASSSQD 110 (138)
T ss_dssp --------TC----HHHHHH---CTTSEEEEECGCCS-HHHHHHHHHHHHHCTTTTSEEEEEECC-
T ss_pred --------Cc----HHHHHH---cCCCEEEECChHHCCHHHHHHHHHHHHhcCCCCeEEEEEeCCC
Confidence 00 111111 24556889999777666666666666532 5678999999754
No 184
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=96.90 E-value=0.019 Score=65.49 Aligned_cols=179 Identities=15% Similarity=0.132 Sum_probs=94.6
Q ss_pred CceeechhhHHHHHHHHhcCCC-------CCCCCeEEEEEEccCCCcHHHHHHHHHcccccccccccEEEEEEeCCcccH
Q 007817 169 RAVYGRDEDKARMLEMVLSDDP-------TTDANFCVIPIVGMAGAGKTMLAREVYNDRAVQNFKFDVKAWVSVSDDFDV 241 (588)
Q Consensus 169 ~~~vGR~~e~~~l~~~L~~~~~-------~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~wv~v~~~~~~ 241 (588)
..+.|.+..++.|.+.+.-+-. .+-..++-+.++|++|+|||+||+.+++.... .| +.+..+
T Consensus 453 ~di~g~~~~k~~l~~~v~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lakalA~e~~~---~f-----i~v~~~--- 521 (733)
T TIGR01243 453 SDIGGLEEVKQELREAVEWPLKHPEIFEKMGIRPPKGVLLFGPPGTGKTLLAKAVATESGA---NF-----IAVRGP--- 521 (733)
T ss_pred hhcccHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCC---CE-----EEEehH---
Confidence 3467888777777776542110 01123456889999999999999999986432 22 222211
Q ss_pred HHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhcCCceeEEecccccc--------C----hhHHHHhhcccCC--CCCCc
Q 007817 242 LRISRALLESITSTNCDFKTLNEVQVKLRIIVDGKKFLLVLDDVWNE--------N----YNLWEILKAPFMA--GARNS 307 (588)
Q Consensus 242 ~~~~~~il~~l~~~~~~~~~~~~l~~~l~~~l~~k~~LLVlDdv~~~--------~----~~~~~~l~~~l~~--~~~gs 307 (588)
+++....+ .+...+...+...-...+.+|+||++..- . ......+...+.. ...+.
T Consensus 522 -----~l~~~~vG-----ese~~i~~~f~~A~~~~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~lL~~ldg~~~~~~v 591 (733)
T TIGR01243 522 -----EILSKWVG-----ESEKAIREIFRKARQAAPAIIFFDEIDAIAPARGARFDTSVTDRIVNQLLTEMDGIQELSNV 591 (733)
T ss_pred -----HHhhcccC-----cHHHHHHHHHHHHHhcCCEEEEEEChhhhhccCCCCCCccHHHHHHHHHHHHhhcccCCCCE
Confidence 11111111 11122222233333466899999998431 0 0112223333322 22345
Q ss_pred EEEEeecchhhhhh-c----cccceeeCCCCCHHHHHHHHHHhhcCCCCCCCChhHHHHHHHHHHHhCCCc
Q 007817 308 KIIVTTCHSNVASM-M----GSVEHYNLKLLSDEYCWSVFVKHAFERRDAGAHQFSKLFRKKIVAKCGGLP 373 (588)
Q Consensus 308 ~ilvTTR~~~v~~~-~----~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~i~~~I~~~c~GlP 373 (588)
-||.||..++.... + .-...+.++..+.++-.++|..+..... ......+ ..+++.|.|.-
T Consensus 592 ~vI~aTn~~~~ld~allRpgRfd~~i~v~~Pd~~~R~~i~~~~~~~~~-~~~~~~l----~~la~~t~g~s 657 (733)
T TIGR01243 592 VVIAATNRPDILDPALLRPGRFDRLILVPPPDEEARKEIFKIHTRSMP-LAEDVDL----EELAEMTEGYT 657 (733)
T ss_pred EEEEeCCChhhCCHhhcCCCccceEEEeCCcCHHHHHHHHHHHhcCCC-CCccCCH----HHHHHHcCCCC
Confidence 56667755543322 1 1245788889999999999876653211 1112222 34667777644
No 185
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=96.90 E-value=0.0087 Score=57.69 Aligned_cols=91 Identities=16% Similarity=0.100 Sum_probs=55.5
Q ss_pred CeEEEEEEccCCCcHHHHHHHHHccccccc---ccccEEEEEEeCCcccHHHHHHHHHHHhcCCCC---------CCCCH
Q 007817 195 NFCVIPIVGMAGAGKTMLAREVYNDRAVQN---FKFDVKAWVSVSDDFDVLRISRALLESITSTNC---------DFKTL 262 (588)
Q Consensus 195 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~---~~f~~~~wv~v~~~~~~~~~~~~il~~l~~~~~---------~~~~~ 262 (588)
.-.++.|+|++|+|||+||.+++......+ ..-..++|++....++...+. .+......... ...+.
T Consensus 18 ~g~v~~I~G~~GsGKT~l~~~ia~~~~~~~~~~g~~~~v~yi~~e~~~~~~rl~-~~~~~~~~~~~~~~~~i~~~~~~~~ 96 (226)
T cd01393 18 TGRITEIFGEFGSGKTQLCLQLAVEAQLPGELGGLEGKVVYIDTEGAFRPERLV-QLAVRFGLDPEEVLDNIYVARPYNG 96 (226)
T ss_pred CCcEEEEeCCCCCChhHHHHHHHHHhhcccccCCCcceEEEEecCCCCCHHHHH-HHHHHhccchhhhhccEEEEeCCCH
Confidence 457999999999999999999876542210 001567899988777655443 33333221100 12345
Q ss_pred HHHHHHHHHHhc----CCceeEEecccc
Q 007817 263 NEVQVKLRIIVD----GKKFLLVLDDVW 286 (588)
Q Consensus 263 ~~l~~~l~~~l~----~k~~LLVlDdv~ 286 (588)
+++...+..... .+.-|+|+|.+.
T Consensus 97 ~~~~~~l~~~~~~~~~~~~~lvVIDsis 124 (226)
T cd01393 97 EQQLEIVEELERIMSSGRVDLVVVDSVA 124 (226)
T ss_pred HHHHHHHHHHHHHhhcCCeeEEEEcCcc
Confidence 555555555442 345589999873
No 186
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=96.90 E-value=0.0034 Score=69.58 Aligned_cols=156 Identities=19% Similarity=0.186 Sum_probs=85.1
Q ss_pred CceeechhhHHHHHHHHhcCCCCCCCCeEEEEEEccCCCcHHHHHHHHHcccccccc---cccEEEEEEeCCcccHHHHH
Q 007817 169 RAVYGRDEDKARMLEMVLSDDPTTDANFCVIPIVGMAGAGKTMLAREVYNDRAVQNF---KFDVKAWVSVSDDFDVLRIS 245 (588)
Q Consensus 169 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~---~f~~~~wv~v~~~~~~~~~~ 245 (588)
..++||++|++++++.|..... +-+ .++|.+|+|||+++.-++...-..+. --+..++ ++
T Consensus 170 DPvIGRd~EI~r~iqIL~RR~K----NNP--vLiGEpGVGKTAIvEGLA~rIv~g~VP~~L~~~~i~-sL---------- 232 (786)
T COG0542 170 DPVIGRDEEIRRTIQILSRRTK----NNP--VLVGEPGVGKTAIVEGLAQRIVNGDVPESLKDKRIY-SL---------- 232 (786)
T ss_pred CCCcChHHHHHHHHHHHhccCC----CCC--eEecCCCCCHHHHHHHHHHHHhcCCCCHHHcCCEEE-Ee----------
Confidence 3589999999999999987643 222 36799999999998777765322210 0001110 00
Q ss_pred HHHHHHhcCCCCCCCCHHHHHHHHHHHh-cCCceeEEecccccc---------ChhHHHHhhcccCCCCCCcEEEEeecc
Q 007817 246 RALLESITSTNCDFKTLNEVQVKLRIIV-DGKKFLLVLDDVWNE---------NYNLWEILKAPFMAGARNSKIIVTTCH 315 (588)
Q Consensus 246 ~~il~~l~~~~~~~~~~~~l~~~l~~~l-~~k~~LLVlDdv~~~---------~~~~~~~l~~~l~~~~~gs~ilvTTR~ 315 (588)
++..-+.+. .-..+.++....+.+.+ +.++.+|++|.++.- ..+.-+.++..|..+ .--.|=.||-
T Consensus 233 -D~g~LvAGa-kyRGeFEeRlk~vl~ev~~~~~vILFIDEiHtiVGAG~~~G~a~DAaNiLKPaLARG-eL~~IGATT~- 308 (786)
T COG0542 233 -DLGSLVAGA-KYRGEFEERLKAVLKEVEKSKNVILFIDEIHTIVGAGATEGGAMDAANLLKPALARG-ELRCIGATTL- 308 (786)
T ss_pred -cHHHHhccc-cccCcHHHHHHHHHHHHhcCCCeEEEEechhhhcCCCcccccccchhhhhHHHHhcC-CeEEEEeccH-
Confidence 111111111 12334555444444444 345899999998641 012222333333322 2223445553
Q ss_pred hhhhhhc-------cccceeeCCCCCHHHHHHHHHHh
Q 007817 316 SNVASMM-------GSVEHYNLKLLSDEYCWSVFVKH 345 (588)
Q Consensus 316 ~~v~~~~-------~~~~~~~l~~L~~~ea~~Lf~~~ 345 (588)
.+.-+.+ ...+.+.+..-+.+++..++.-.
T Consensus 309 ~EYRk~iEKD~AL~RRFQ~V~V~EPs~e~ti~ILrGl 345 (786)
T COG0542 309 DEYRKYIEKDAALERRFQKVLVDEPSVEDTIAILRGL 345 (786)
T ss_pred HHHHHHhhhchHHHhcCceeeCCCCCHHHHHHHHHHH
Confidence 3332222 24477889999999998887643
No 187
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=96.90 E-value=0.0028 Score=63.90 Aligned_cols=84 Identities=20% Similarity=0.157 Sum_probs=55.9
Q ss_pred CeEEEEEEccCCCcHHHHHHHHHcccccccccccEEEEEEeCCcccHHHHHHHHHHHhcCCCC-----CCCCHHHHHHHH
Q 007817 195 NFCVIPIVGMAGAGKTMLAREVYNDRAVQNFKFDVKAWVSVSDDFDVLRISRALLESITSTNC-----DFKTLNEVQVKL 269 (588)
Q Consensus 195 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~il~~l~~~~~-----~~~~~~~l~~~l 269 (588)
.-+++-|+|++|+||||||.+++..... .-..++||+....++.. .++.++.... ...+.++....+
T Consensus 54 ~G~iteI~Gp~GsGKTtLal~~~~~~~~---~g~~~vyId~E~~~~~~-----~a~~lGvd~~~l~v~~p~~~eq~l~i~ 125 (325)
T cd00983 54 KGRIIEIYGPESSGKTTLALHAIAEAQK---LGGTVAFIDAEHALDPV-----YAKKLGVDLDNLLISQPDTGEQALEIA 125 (325)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHH---cCCCEEEECccccHHHH-----HHHHcCCCHHHheecCCCCHHHHHHHH
Confidence 4578999999999999999998875543 23467899988776653 2333332211 234556665555
Q ss_pred HHHhc-CCceeEEecccc
Q 007817 270 RIIVD-GKKFLLVLDDVW 286 (588)
Q Consensus 270 ~~~l~-~k~~LLVlDdv~ 286 (588)
...++ +..-+||+|.|-
T Consensus 126 ~~li~s~~~~lIVIDSva 143 (325)
T cd00983 126 DSLVRSGAVDLIVVDSVA 143 (325)
T ss_pred HHHHhccCCCEEEEcchH
Confidence 55554 456799999873
No 188
>PF08423 Rad51: Rad51; InterPro: IPR013632 This domain is found at the C terminus of the DNA repair and recombination protein Rad51. It is critical for DNA binding []. Rad51 is a homologue of the bacterial RecA protein. Rad51 and RecA share a core ATPase domain.; PDB: 2ZUC_A 2Z43_C 2ZUD_B 2DFL_A 2ZUB_A 2BKE_A 2KZ3_A 2CVH_B 2CVF_B 1SZP_D ....
Probab=96.89 E-value=0.002 Score=63.27 Aligned_cols=56 Identities=20% Similarity=0.246 Sum_probs=39.9
Q ss_pred eEEEEEEccCCCcHHHHHHHHHcccccc---cccccEEEEEEeCCcccHHHHHHHHHHHh
Q 007817 196 FCVIPIVGMAGAGKTMLAREVYNDRAVQ---NFKFDVKAWVSVSDDFDVLRISRALLESI 252 (588)
Q Consensus 196 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~---~~~f~~~~wv~v~~~~~~~~~~~~il~~l 252 (588)
-.+.=|+|++|+|||+|+.+++-..... +..=..++|++-...|+..++. +|++..
T Consensus 38 g~itEi~G~~gsGKTql~l~l~~~~~l~~~~~g~~~~vvyidTe~~f~~~Rl~-~i~~~~ 96 (256)
T PF08423_consen 38 GSITEIVGESGSGKTQLCLQLAVNVQLPEEIGGLGGKVVYIDTEGTFSPERLQ-QIAERF 96 (256)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHTTSGGCTTSSSSEEEEEESSSSS-HHHHH-HHHHHT
T ss_pred CcEEEEEEecccccchHHHHHHHHhhcccccccCCCceEEEeCCCCCCHHHHH-HHhhcc
Confidence 3688999999999999998886543321 1023468999999999887775 456554
No 189
>PRK06696 uridine kinase; Validated
Probab=96.86 E-value=0.0014 Score=63.09 Aligned_cols=45 Identities=22% Similarity=0.273 Sum_probs=36.8
Q ss_pred chhhHHHHHHHHhcCCCCCCCCeEEEEEEccCCCcHHHHHHHHHcccc
Q 007817 174 RDEDKARMLEMVLSDDPTTDANFCVIPIVGMAGAGKTMLAREVYNDRA 221 (588)
Q Consensus 174 R~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~ 221 (588)
|.+-+++|.+.+.... .+.+.+|+|.|.+|+||||||+.+.....
T Consensus 3 ~~~~~~~la~~~~~~~---~~~~~iI~I~G~sgsGKSTlA~~L~~~l~ 47 (223)
T PRK06696 3 RKQLIKELAEHILTLN---LTRPLRVAIDGITASGKTTFADELAEEIK 47 (223)
T ss_pred HHHHHHHHHHHHHHhC---CCCceEEEEECCCCCCHHHHHHHHHHHHH
Confidence 6677888888887643 24678999999999999999999998653
No 190
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=96.85 E-value=0.0032 Score=63.38 Aligned_cols=84 Identities=19% Similarity=0.167 Sum_probs=55.7
Q ss_pred CeEEEEEEccCCCcHHHHHHHHHcccccccccccEEEEEEeCCcccHHHHHHHHHHHhcCCCC-----CCCCHHHHHHHH
Q 007817 195 NFCVIPIVGMAGAGKTMLAREVYNDRAVQNFKFDVKAWVSVSDDFDVLRISRALLESITSTNC-----DFKTLNEVQVKL 269 (588)
Q Consensus 195 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~il~~l~~~~~-----~~~~~~~l~~~l 269 (588)
.-+++-|+|++|+||||||.+++..... .-..++||+....++.. .+++++.... ...+.++....+
T Consensus 54 ~G~iteI~G~~GsGKTtLaL~~~~~~~~---~g~~v~yId~E~~~~~~-----~a~~lGvd~~~l~v~~p~~~eq~l~~~ 125 (321)
T TIGR02012 54 RGRIIEIYGPESSGKTTLALHAIAEAQK---AGGTAAFIDAEHALDPV-----YARKLGVDIDNLLVSQPDTGEQALEIA 125 (321)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHH---cCCcEEEEcccchhHHH-----HHHHcCCCHHHeEEecCCCHHHHHHHH
Confidence 4579999999999999999988776543 23457799887766653 2344432211 234555555555
Q ss_pred HHHhc-CCceeEEecccc
Q 007817 270 RIIVD-GKKFLLVLDDVW 286 (588)
Q Consensus 270 ~~~l~-~k~~LLVlDdv~ 286 (588)
...++ +..-++|+|.+-
T Consensus 126 ~~li~~~~~~lIVIDSv~ 143 (321)
T TIGR02012 126 ETLVRSGAVDIIVVDSVA 143 (321)
T ss_pred HHHhhccCCcEEEEcchh
Confidence 55553 456799999974
No 191
>PRK13695 putative NTPase; Provisional
Probab=96.85 E-value=0.0019 Score=59.61 Aligned_cols=25 Identities=32% Similarity=0.321 Sum_probs=21.4
Q ss_pred EEEEEccCCCcHHHHHHHHHccccc
Q 007817 198 VIPIVGMAGAGKTMLAREVYNDRAV 222 (588)
Q Consensus 198 vv~I~G~gGiGKTtLA~~v~~~~~~ 222 (588)
.++|+|.+|+|||||++.+++....
T Consensus 2 ~i~ltG~~G~GKTTll~~i~~~l~~ 26 (174)
T PRK13695 2 KIGITGPPGVGKTTLVLKIAELLKE 26 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH
Confidence 4789999999999999999876543
No 192
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=96.84 E-value=0.0058 Score=58.60 Aligned_cols=43 Identities=21% Similarity=0.173 Sum_probs=32.6
Q ss_pred CeEEEEEEccCCCcHHHHHHHHHcccccccccccEEEEEEeCCccc
Q 007817 195 NFCVIPIVGMAGAGKTMLAREVYNDRAVQNFKFDVKAWVSVSDDFD 240 (588)
Q Consensus 195 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~wv~v~~~~~ 240 (588)
.-.++.|.|.+|+||||||.+++..... .-..++|++....+.
T Consensus 18 ~g~i~~i~G~~GsGKT~l~~~~a~~~~~---~g~~v~yi~~e~~~~ 60 (218)
T cd01394 18 RGTVTQVYGPPGTGKTNIAIQLAVETAG---QGKKVAYIDTEGLSS 60 (218)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHh---cCCeEEEEECCCCCH
Confidence 4579999999999999999999876533 224577887765543
No 193
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=96.84 E-value=0.048 Score=54.58 Aligned_cols=176 Identities=16% Similarity=0.127 Sum_probs=97.1
Q ss_pred eeechhhHHHHHHHHhcCCC-------CCCCCeEEEEEEccCCCcHHHHHHHHHcccccccccccEEEEEEeCCcccHHH
Q 007817 171 VYGRDEDKARMLEMVLSDDP-------TTDANFCVIPIVGMAGAGKTMLAREVYNDRAVQNFKFDVKAWVSVSDDFDVLR 243 (588)
Q Consensus 171 ~vGR~~e~~~l~~~L~~~~~-------~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~ 243 (588)
+=|-++.+++|.+.+.-+-. -+-..++=|.++|++|.|||-||++|+++... .| +.+..+
T Consensus 153 IGGL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~T~A---tF-----IrvvgS----- 219 (406)
T COG1222 153 IGGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQTDA---TF-----IRVVGS----- 219 (406)
T ss_pred ccCHHHHHHHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHhccCc---eE-----EEeccH-----
Confidence 44678888888877643221 12345677889999999999999999995432 23 333322
Q ss_pred HHHHHHHHhcCCCCCCCCHHHHHHHHHHHhc-CCceeEEecccccc-----------C---hhHHHHhhcccCCC--CCC
Q 007817 244 ISRALLESITSTNCDFKTLNEVQVKLRIIVD-GKKFLLVLDDVWNE-----------N---YNLWEILKAPFMAG--ARN 306 (588)
Q Consensus 244 ~~~~il~~l~~~~~~~~~~~~l~~~l~~~l~-~k~~LLVlDdv~~~-----------~---~~~~~~l~~~l~~~--~~g 306 (588)
++.+..-+. ...+...+.+.-+ ..+.+|.+|.++.- + +...-+|+..+... ...
T Consensus 220 ---ElVqKYiGE------GaRlVRelF~lArekaPsIIFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~qlDGFD~~~n 290 (406)
T COG1222 220 ---ELVQKYIGE------GARLVRELFELAREKAPSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQLDGFDPRGN 290 (406)
T ss_pred ---HHHHHHhcc------chHHHHHHHHHHhhcCCeEEEEechhhhhcccccCCCCchHHHHHHHHHHHHhccCCCCCCC
Confidence 223222221 1223333433333 56899999987421 0 11122233333221 245
Q ss_pred cEEEEeecchhhhhh--cc---ccceeeCCCCCHHHHHHHHHHhhcCCCCCCCChhHHHHHHHHHHHhCCCc
Q 007817 307 SKIIVTTCHSNVASM--MG---SVEHYNLKLLSDEYCWSVFVKHAFERRDAGAHQFSKLFRKKIVAKCGGLP 373 (588)
Q Consensus 307 s~ilvTTR~~~v~~~--~~---~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~i~~~I~~~c~GlP 373 (588)
.|||..|...+.... +. -+..++++.-+.+.-.++|.-|.-.- +....-.++ .|++.|.|.-
T Consensus 291 vKVI~ATNR~D~LDPALLRPGR~DRkIEfplPd~~gR~~Il~IHtrkM-~l~~dvd~e----~la~~~~g~s 357 (406)
T COG1222 291 VKVIMATNRPDILDPALLRPGRFDRKIEFPLPDEEGRAEILKIHTRKM-NLADDVDLE----LLARLTEGFS 357 (406)
T ss_pred eEEEEecCCccccChhhcCCCcccceeecCCCCHHHHHHHHHHHhhhc-cCccCcCHH----HHHHhcCCCc
Confidence 789998876655432 11 23568887555555566676665322 112233344 3666666654
No 194
>PRK06835 DNA replication protein DnaC; Validated
Probab=96.81 E-value=0.0018 Score=65.79 Aligned_cols=102 Identities=21% Similarity=0.206 Sum_probs=55.3
Q ss_pred EEEEEEccCCCcHHHHHHHHHcccccccccccEEEEEEeCCcccHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhcCC
Q 007817 197 CVIPIVGMAGAGKTMLAREVYNDRAVQNFKFDVKAWVSVSDDFDVLRISRALLESITSTNCDFKTLNEVQVKLRIIVDGK 276 (588)
Q Consensus 197 ~vv~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~il~~l~~~~~~~~~~~~l~~~l~~~l~~k 276 (588)
..+.++|.+|+|||.||..+++....++ + .++++++.+ ++..+...-. . ...+... .+. .+. .
T Consensus 184 ~~Lll~G~~GtGKThLa~aIa~~l~~~g--~-~V~y~t~~~------l~~~l~~~~~-~--~~~~~~~---~~~-~l~-~ 246 (329)
T PRK06835 184 ENLLFYGNTGTGKTFLSNCIAKELLDRG--K-SVIYRTADE------LIEILREIRF-N--NDKELEE---VYD-LLI-N 246 (329)
T ss_pred CcEEEECCCCCcHHHHHHHHHHHHHHCC--C-eEEEEEHHH------HHHHHHHHHh-c--cchhHHH---HHH-Hhc-c
Confidence 5699999999999999999999765433 2 455665532 3333322111 0 1111111 122 222 2
Q ss_pred ceeEEeccccccChhHHH--HhhcccCCC-CCCcEEEEeecc
Q 007817 277 KFLLVLDDVWNENYNLWE--ILKAPFMAG-ARNSKIIVTTCH 315 (588)
Q Consensus 277 ~~LLVlDdv~~~~~~~~~--~l~~~l~~~-~~gs~ilvTTR~ 315 (588)
-=||||||+.......|. .+...+... ..+-.+||||..
T Consensus 247 ~DLLIIDDlG~e~~t~~~~~~Lf~iin~R~~~~k~tIiTSNl 288 (329)
T PRK06835 247 CDLLIIDDLGTEKITEFSKSELFNLINKRLLRQKKMIISTNL 288 (329)
T ss_pred CCEEEEeccCCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCC
Confidence 358999999655333332 233333221 224568888853
No 195
>PRK09354 recA recombinase A; Provisional
Probab=96.78 E-value=0.0039 Score=63.34 Aligned_cols=84 Identities=19% Similarity=0.169 Sum_probs=57.0
Q ss_pred CeEEEEEEccCCCcHHHHHHHHHcccccccccccEEEEEEeCCcccHHHHHHHHHHHhcCCCC-----CCCCHHHHHHHH
Q 007817 195 NFCVIPIVGMAGAGKTMLAREVYNDRAVQNFKFDVKAWVSVSDDFDVLRISRALLESITSTNC-----DFKTLNEVQVKL 269 (588)
Q Consensus 195 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~il~~l~~~~~-----~~~~~~~l~~~l 269 (588)
.-+++-|+|++|+||||||.+++..... .-..++||+....++.. .++.++.... ...+.++....+
T Consensus 59 ~G~IteI~G~~GsGKTtLal~~~~~~~~---~G~~~~yId~E~s~~~~-----~a~~lGvdld~lli~qp~~~Eq~l~i~ 130 (349)
T PRK09354 59 RGRIVEIYGPESSGKTTLALHAIAEAQK---AGGTAAFIDAEHALDPV-----YAKKLGVDIDNLLVSQPDTGEQALEIA 130 (349)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHH---cCCcEEEECCccchHHH-----HHHHcCCCHHHeEEecCCCHHHHHHHH
Confidence 4579999999999999999998876543 33567899998877753 3344432211 234456655555
Q ss_pred HHHhc-CCceeEEecccc
Q 007817 270 RIIVD-GKKFLLVLDDVW 286 (588)
Q Consensus 270 ~~~l~-~k~~LLVlDdv~ 286 (588)
...++ +..-+||+|.|-
T Consensus 131 ~~li~s~~~~lIVIDSva 148 (349)
T PRK09354 131 DTLVRSGAVDLIVVDSVA 148 (349)
T ss_pred HHHhhcCCCCEEEEeChh
Confidence 55554 456799999984
No 196
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=96.78 E-value=0.0062 Score=60.83 Aligned_cols=87 Identities=16% Similarity=0.181 Sum_probs=48.4
Q ss_pred CeEEEEEEccCCCcHHHHHHHHHcccccc-cccccEEEEEEeCCc-ccHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHH
Q 007817 195 NFCVIPIVGMAGAGKTMLAREVYNDRAVQ-NFKFDVKAWVSVSDD-FDVLRISRALLESITSTNCDFKTLNEVQVKLRII 272 (588)
Q Consensus 195 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~-~~~f~~~~wv~v~~~-~~~~~~~~~il~~l~~~~~~~~~~~~l~~~l~~~ 272 (588)
...+++|+|++|+||||++..++.....+ + . ..+..|+.... ......+....+.++.+.....+...+...+...
T Consensus 193 ~~~vi~~vGptGvGKTTt~~kLa~~~~~~~g-~-~~V~li~~D~~r~~a~eql~~~~~~~~~p~~~~~~~~~l~~~l~~~ 270 (282)
T TIGR03499 193 QGGVIALVGPTGVGKTTTLAKLAARFVLEHG-N-KKVALITTDTYRIGAVEQLKTYAKILGVPVKVARDPKELRKALDRL 270 (282)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHHcC-C-CeEEEEECCccchhHHHHHHHHHHHhCCceeccCCHHHHHHHHHHc
Confidence 45799999999999999999998766433 1 1 23445554431 1122333333444443332334444554444433
Q ss_pred hcCCceeEEeccc
Q 007817 273 VDGKKFLLVLDDV 285 (588)
Q Consensus 273 l~~k~~LLVlDdv 285 (588)
.+ .=+|++|..
T Consensus 271 -~~-~d~vliDt~ 281 (282)
T TIGR03499 271 -RD-KDLILIDTA 281 (282)
T ss_pred -cC-CCEEEEeCC
Confidence 33 347777753
No 197
>PRK05541 adenylylsulfate kinase; Provisional
Probab=96.78 E-value=0.0022 Score=59.27 Aligned_cols=36 Identities=36% Similarity=0.584 Sum_probs=27.6
Q ss_pred CeEEEEEEccCCCcHHHHHHHHHcccccccccccEEEEE
Q 007817 195 NFCVIPIVGMAGAGKTMLAREVYNDRAVQNFKFDVKAWV 233 (588)
Q Consensus 195 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~wv 233 (588)
+..+|.|.|++|+||||+|+.+++.... .+...+++
T Consensus 6 ~~~~I~i~G~~GsGKst~a~~l~~~l~~---~~~~~~~~ 41 (176)
T PRK05541 6 NGYVIWITGLAGSGKTTIAKALYERLKL---KYSNVIYL 41 (176)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHHH---cCCcEEEE
Confidence 4569999999999999999999986643 33444444
No 198
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=96.77 E-value=0.0055 Score=54.29 Aligned_cols=22 Identities=32% Similarity=0.584 Sum_probs=19.9
Q ss_pred EEEEEccCCCcHHHHHHHHHcc
Q 007817 198 VIPIVGMAGAGKTMLAREVYND 219 (588)
Q Consensus 198 vv~I~G~gGiGKTtLA~~v~~~ 219 (588)
+|.++|++|+||||+|+.+...
T Consensus 1 lii~~G~pgsGKSt~a~~l~~~ 22 (143)
T PF13671_consen 1 LIILCGPPGSGKSTLAKRLAKR 22 (143)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 5889999999999999999864
No 199
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=96.77 E-value=0.0062 Score=61.53 Aligned_cols=59 Identities=17% Similarity=0.212 Sum_probs=42.0
Q ss_pred CeEEEEEEccCCCcHHHHHHHHHcccccc---cccccEEEEEEeCCcccHHHHHHHHHHHhcC
Q 007817 195 NFCVIPIVGMAGAGKTMLAREVYNDRAVQ---NFKFDVKAWVSVSDDFDVLRISRALLESITS 254 (588)
Q Consensus 195 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~---~~~f~~~~wv~v~~~~~~~~~~~~il~~l~~ 254 (588)
.-.++-|+|++|+|||+|+.+++-..... +..=..++||+....|+..++.+ +++.++.
T Consensus 95 ~G~iteI~G~~GsGKTql~lqla~~~~~~~~~gg~~~~vvYIdtE~~f~~eRi~~-~a~~~g~ 156 (313)
T TIGR02238 95 SMSITEVFGEFRCGKTQLSHTLCVTAQLPREMGGGNGKVAYIDTEGTFRPDRIRA-IAERFGV 156 (313)
T ss_pred CCeEEEEECCCCCCcCHHHHHHHHHHhcchhhcCCCCeEEEEEcCCCCCHHHHHH-HHHHcCC
Confidence 45799999999999999998876433211 10124688999999888887754 5565543
No 200
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=96.76 E-value=0.011 Score=54.68 Aligned_cols=117 Identities=18% Similarity=0.136 Sum_probs=59.7
Q ss_pred EEEEEEccCCCcHHHHHHHHHcccccccccccEEEEEEeCCcccHHHHHHHHHHHhcC--CC------------C-CCCC
Q 007817 197 CVIPIVGMAGAGKTMLAREVYNDRAVQNFKFDVKAWVSVSDDFDVLRISRALLESITS--TN------------C-DFKT 261 (588)
Q Consensus 197 ~vv~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~il~~l~~--~~------------~-~~~~ 261 (588)
.+++|.|+.|+|||||++.+....... ...+++.-. ++......+-..++. +. . ....
T Consensus 29 e~~~i~G~nGsGKStLl~~l~G~~~~~----~G~i~~~g~---~~~~~~~~~~~~i~~~~q~~~~~~~tv~~~i~~~LS~ 101 (178)
T cd03247 29 EKIALLGRSGSGKSTLLQLLTGDLKPQ----QGEITLDGV---PVSDLEKALSSLISVLNQRPYLFDTTLRNNLGRRFSG 101 (178)
T ss_pred CEEEEECCCCCCHHHHHHHHhccCCCC----CCEEEECCE---EHHHHHHHHHhhEEEEccCCeeecccHHHhhcccCCH
Confidence 589999999999999999998764321 223332211 111111111111110 00 0 1111
Q ss_pred HHHHHHHHHHHhcCCceeEEecccccc-ChhHHHHhhcccCCCCCCcEEEEeecchhhhh
Q 007817 262 LNEVQVKLRIIVDGKKFLLVLDDVWNE-NYNLWEILKAPFMAGARNSKIIVTTCHSNVAS 320 (588)
Q Consensus 262 ~~~l~~~l~~~l~~k~~LLVlDdv~~~-~~~~~~~l~~~l~~~~~gs~ilvTTR~~~v~~ 320 (588)
.+...-.+...+-.++=++++|+.... +....+.+...+.....+..||++|.+.....
T Consensus 102 G~~qrv~laral~~~p~~lllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~ 161 (178)
T cd03247 102 GERQRLALARILLQDAPIVLLDEPTVGLDPITERQLLSLIFEVLKDKTLIWITHHLTGIE 161 (178)
T ss_pred HHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHH
Confidence 122233455666678889999986431 22222223222222123677888888776654
No 201
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=96.72 E-value=0.018 Score=56.93 Aligned_cols=173 Identities=20% Similarity=0.166 Sum_probs=92.9
Q ss_pred CceeechhhHHHHHHHHhcCCCCCCCCeEEEEEEccCCCcHHHHHHHHHcccccccccccEEEEEEeCCcc-----cHHH
Q 007817 169 RAVYGRDEDKARMLEMVLSDDPTTDANFCVIPIVGMAGAGKTMLAREVYNDRAVQNFKFDVKAWVSVSDDF-----DVLR 243 (588)
Q Consensus 169 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~wv~v~~~~-----~~~~ 243 (588)
..++|-.++..++-.++...-. .+....+.|+|+.|.|||+|......+. +. .-+..+-|...... .+..
T Consensus 24 ~~l~g~~~~~~~l~~~lkqt~~--~gEsnsviiigprgsgkT~li~~~Ls~~--q~-~~E~~l~v~Lng~~~~dk~al~~ 98 (408)
T KOG2228|consen 24 INLFGVQDEQKHLSELLKQTIL--HGESNSVIIIGPRGSGKTILIDTRLSDI--QE-NGENFLLVRLNGELQTDKIALKG 98 (408)
T ss_pred cceeehHHHHHHHHHHHHHHHH--hcCCCceEEEccCCCCceEeeHHHHhhH--Hh-cCCeEEEEEECccchhhHHHHHH
Confidence 3478989998888888865321 1233578899999999999998887772 21 22233334443322 3344
Q ss_pred HHHHHHHHhcCCCCCCCCHHHHHHHHHHHhc------CCceeEEeccccccChhHHHHhhc-cc----CCCCCCcEEEEe
Q 007817 244 ISRALLESITSTNCDFKTLNEVQVKLRIIVD------GKKFLLVLDDVWNENYNLWEILKA-PF----MAGARNSKIIVT 312 (588)
Q Consensus 244 ~~~~il~~l~~~~~~~~~~~~l~~~l~~~l~------~k~~LLVlDdv~~~~~~~~~~l~~-~l----~~~~~gs~ilvT 312 (588)
+.+++..++........+..+...++-..|+ +-++++|+|.++-.-.-.-..+.. .| ....+-+-|-+|
T Consensus 99 I~rql~~e~~~~~k~~gsfte~l~~lL~~L~~~~~~t~~~ViFIldEfDlf~~h~rQtllYnlfDisqs~r~Piciig~T 178 (408)
T KOG2228|consen 99 ITRQLALELNRIVKSFGSFTENLSKLLEALKKGDETTSGKVIFILDEFDLFAPHSRQTLLYNLFDISQSARAPICIIGVT 178 (408)
T ss_pred HHHHHHHHHhhhheeecccchhHHHHHHHHhcCCCCCCceEEEEeehhhccccchhhHHHHHHHHHHhhcCCCeEEEEee
Confidence 4444444443332222333333333433332 235788888774321111111111 11 123345667789
Q ss_pred ecchhhh-------hhccccceeeCCCCCHHHHHHHHHHhh
Q 007817 313 TCHSNVA-------SMMGSVEHYNLKLLSDEYCWSVFVKHA 346 (588)
Q Consensus 313 TR~~~v~-------~~~~~~~~~~l~~L~~~ea~~Lf~~~a 346 (588)
||-.... ..+....++-++.++-++...++++..
T Consensus 179 trld~lE~LEKRVKSRFshr~I~m~~~~~l~~yv~l~r~ll 219 (408)
T KOG2228|consen 179 TRLDILELLEKRVKSRFSHRVIFMLPSLPLGDYVDLYRKLL 219 (408)
T ss_pred ccccHHHHHHHHHHhhcccceeeccCCCChHHHHHHHHHHh
Confidence 9865221 112222345566788888888888765
No 202
>PTZ00494 tuzin-like protein; Provisional
Probab=96.71 E-value=0.2 Score=51.81 Aligned_cols=171 Identities=12% Similarity=0.183 Sum_probs=105.2
Q ss_pred CCCCCCCceeechhhHHHHHHHHhcCCCCCCCCeEEEEEEccCCCcHHHHHHHHHcccccccccccEEEEEEeCCcccHH
Q 007817 163 SRVPTERAVYGRDEDKARMLEMVLSDDPTTDANFCVIPIVGMAGAGKTMLAREVYNDRAVQNFKFDVKAWVSVSDDFDVL 242 (588)
Q Consensus 163 ~~~~~~~~~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~wv~v~~~~~~~ 242 (588)
........+|.|+.|-..+.+.|...+. ..++++.+.|.-|.|||+|.+........ ..++|.+... +
T Consensus 365 ~a~a~~~~~V~R~~eE~~vRqvL~qld~---aHPRIvV~TG~~GcGKSslcRsAvrkE~~------paV~VDVRg~---E 432 (664)
T PTZ00494 365 LAAAAEAFEVRREDEEALVRSVLTQMAP---SHPRIVALAGGSGGGRCVPCRRAVRVEGV------ALVHVDVGGT---E 432 (664)
T ss_pred ccccccccccchhhHHHHHHHHHhhccC---CCCcEEEEecCCCCCchHHHHHHHHHcCC------CeEEEEecCC---c
Confidence 3445567789999999999998877653 57899999999999999999988775433 4567777654 3
Q ss_pred HHHHHHHHHhcCCCCCC--CCHHHHHH---HHHHHhcCCceeEEeccccccC-hhHHHHhhcccCCCCCCcEEEEeecch
Q 007817 243 RISRALLESITSTNCDF--KTLNEVQV---KLRIIVDGKKFLLVLDDVWNEN-YNLWEILKAPFMAGARNSKIIVTTCHS 316 (588)
Q Consensus 243 ~~~~~il~~l~~~~~~~--~~~~~l~~---~l~~~l~~k~~LLVlDdv~~~~-~~~~~~l~~~l~~~~~gs~ilvTTR~~ 316 (588)
+-++.+.+.++.+..+. +-++.+.+ .-+....++.-+||+-=-.-.+ ....++. ..|.....-|+|++----+
T Consensus 433 DtLrsVVKALgV~nve~CGDlLdFI~ea~~~A~~~~~g~~P~lVlkLREGssL~RVYnE~-vaLacDrRlCHvv~EVplE 511 (664)
T PTZ00494 433 DTLRSVVRALGVSNVEVCGDLLGFVEEAMRGATVKASDGVPFLVMRLREGSDLGRVYGEV-VSLVSDCQACHIVLAVPMK 511 (664)
T ss_pred chHHHHHHHhCCCChhhhccHHHHHHHHHHHHHHhcCCCCCEEEEEeccCCcHHHHHHHH-HHHHccchhheeeeechHh
Confidence 45678888888765432 22333332 2233345676677763111010 0111111 1222333456676654333
Q ss_pred hhhhhc---cccceeeCCCCCHHHHHHHHHHhh
Q 007817 317 NVASMM---GSVEHYNLKLLSDEYCWSVFVKHA 346 (588)
Q Consensus 317 ~v~~~~---~~~~~~~l~~L~~~ea~~Lf~~~a 346 (588)
.+.... ..-..|.+.+++.++|.++..+..
T Consensus 512 SLT~~n~~LPRLDFy~VPnFSr~QAf~YtqH~l 544 (664)
T PTZ00494 512 ALTPLNVSSRRLDFYCIPPFSRRQAFAYAEHTL 544 (664)
T ss_pred hhchhhccCccceeEecCCcCHHHHHHHHhccc
Confidence 332211 123568899999999999887654
No 203
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=96.70 E-value=0.014 Score=54.03 Aligned_cols=119 Identities=14% Similarity=0.125 Sum_probs=64.8
Q ss_pred EEEEEEccCCCcHHHHHHHHHcccccccccccEEEEEE---eCCcccHHHH------HHHHHHHhcCCC-----C-CCCC
Q 007817 197 CVIPIVGMAGAGKTMLAREVYNDRAVQNFKFDVKAWVS---VSDDFDVLRI------SRALLESITSTN-----C-DFKT 261 (588)
Q Consensus 197 ~vv~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~wv~---v~~~~~~~~~------~~~il~~l~~~~-----~-~~~~ 261 (588)
.+++|+|+.|+|||||.+.++..... ....+++. +.. .+.... ..++++.++... . ....
T Consensus 26 ~~~~l~G~nGsGKStLl~~i~G~~~~----~~G~v~~~g~~~~~-~~~~~~~~~i~~~~q~l~~~gl~~~~~~~~~~LS~ 100 (180)
T cd03214 26 EIVGILGPNGAGKSTLLKTLAGLLKP----SSGEILLDGKDLAS-LSPKELARKIAYVPQALELLGLAHLADRPFNELSG 100 (180)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCC----CCcEEEECCEECCc-CCHHHHHHHHhHHHHHHHHcCCHhHhcCCcccCCH
Confidence 58999999999999999999885432 23334332 221 111111 112344443221 1 1122
Q ss_pred HHHHHHHHHHHhcCCceeEEeccccc-cChhHHHHhhcccCCC-CC-CcEEEEeecchhhhh
Q 007817 262 LNEVQVKLRIIVDGKKFLLVLDDVWN-ENYNLWEILKAPFMAG-AR-NSKIIVTTCHSNVAS 320 (588)
Q Consensus 262 ~~~l~~~l~~~l~~k~~LLVlDdv~~-~~~~~~~~l~~~l~~~-~~-gs~ilvTTR~~~v~~ 320 (588)
.+...-.+...+-..+-++++|+.-. -+....+.+...+... .. +..||++|.+.....
T Consensus 101 G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tiii~sh~~~~~~ 162 (180)
T cd03214 101 GERQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLELLRRLARERGKTVVMVLHDLNLAA 162 (180)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHH
Confidence 23333356666777889999998632 2223333443333321 12 667888888766543
No 204
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=96.68 E-value=0.0026 Score=59.89 Aligned_cols=106 Identities=15% Similarity=0.071 Sum_probs=54.3
Q ss_pred EEEEEEccCCCcHHHHHHHHHcccccccccccEEEEEEeCCcccHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHH-h--
Q 007817 197 CVIPIVGMAGAGKTMLAREVYNDRAVQNFKFDVKAWVSVSDDFDVLRISRALLESITSTNCDFKTLNEVQVKLRII-V-- 273 (588)
Q Consensus 197 ~vv~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~il~~l~~~~~~~~~~~~l~~~l~~~-l-- 273 (588)
+++.|.|++|.||||++..+.......+ ..+.+..........+... .+.. ..++.......... .
T Consensus 19 ~~~~l~G~aGtGKT~~l~~~~~~~~~~g----~~v~~~apT~~Aa~~L~~~----~~~~---a~Ti~~~l~~~~~~~~~~ 87 (196)
T PF13604_consen 19 RVSVLQGPAGTGKTTLLKALAEALEAAG----KRVIGLAPTNKAAKELREK----TGIE---AQTIHSFLYRIPNGDDEG 87 (196)
T ss_dssp SEEEEEESTTSTHHHHHHHHHHHHHHTT------EEEEESSHHHHHHHHHH----HTS----EEEHHHHTTEECCEECCS
T ss_pred eEEEEEECCCCCHHHHHHHHHHHHHhCC----CeEEEECCcHHHHHHHHHh----hCcc---hhhHHHHHhcCCcccccc
Confidence 5888999999999999999887655432 2333333333222332222 2211 01111000000000 0
Q ss_pred ---cCCceeEEeccccccChhHHHHhhcccCCCCCCcEEEEeecc
Q 007817 274 ---DGKKFLLVLDDVWNENYNLWEILKAPFMAGARNSKIIVTTCH 315 (588)
Q Consensus 274 ---~~k~~LLVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTTR~ 315 (588)
..+.-+||+|++...+...+..+...... .|+++|+.--.
T Consensus 88 ~~~~~~~~vliVDEasmv~~~~~~~ll~~~~~--~~~klilvGD~ 130 (196)
T PF13604_consen 88 RPELPKKDVLIVDEASMVDSRQLARLLRLAKK--SGAKLILVGDP 130 (196)
T ss_dssp SCC-TSTSEEEESSGGG-BHHHHHHHHHHS-T---T-EEEEEE-T
T ss_pred cccCCcccEEEEecccccCHHHHHHHHHHHHh--cCCEEEEECCc
Confidence 13446999999977776677777666554 47788877643
No 205
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.64 E-value=0.012 Score=53.99 Aligned_cols=117 Identities=15% Similarity=0.146 Sum_probs=59.6
Q ss_pred EEEEEEccCCCcHHHHHHHHHcccccccccccEEEEEEeCC--cccHHHHHHHHHHHhcC--CCCC----------CCCH
Q 007817 197 CVIPIVGMAGAGKTMLAREVYNDRAVQNFKFDVKAWVSVSD--DFDVLRISRALLESITS--TNCD----------FKTL 262 (588)
Q Consensus 197 ~vv~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~wv~v~~--~~~~~~~~~~il~~l~~--~~~~----------~~~~ 262 (588)
.+++|+|+.|.|||||.+.++.-... ....+++.-.+ ..+.... -..+.. +... ....
T Consensus 29 ~~~~l~G~nGsGKstLl~~i~G~~~~----~~G~i~~~g~~~~~~~~~~~----~~~i~~~~~~~~~~~~t~~e~lLS~G 100 (171)
T cd03228 29 EKVAIVGPSGSGKSTLLKLLLRLYDP----TSGEILIDGVDLRDLDLESL----RKNIAYVPQDPFLFSGTIRENILSGG 100 (171)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCC----CCCEEEECCEEhhhcCHHHH----HhhEEEEcCCchhccchHHHHhhCHH
Confidence 58999999999999999999886432 22333322110 0011111 111110 0000 0111
Q ss_pred HHHHHHHHHHhcCCceeEEeccccc-cChhHHHHhhcccCCCCCCcEEEEeecchhhhhh
Q 007817 263 NEVQVKLRIIVDGKKFLLVLDDVWN-ENYNLWEILKAPFMAGARNSKIIVTTCHSNVASM 321 (588)
Q Consensus 263 ~~l~~~l~~~l~~k~~LLVlDdv~~-~~~~~~~~l~~~l~~~~~gs~ilvTTR~~~v~~~ 321 (588)
+...-.+...+-.++-+|++|+-.. -+......+...+.....+..||++|.+......
T Consensus 101 ~~~rl~la~al~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~ 160 (171)
T cd03228 101 QRQRIAIARALLRDPPILILDEATSALDPETEALILEALRALAKGKTVIVIAHRLSTIRD 160 (171)
T ss_pred HHHHHHHHHHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHHh
Confidence 1222345556667788999998642 1222233333333222235678888887766543
No 206
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=96.62 E-value=0.024 Score=51.84 Aligned_cols=116 Identities=11% Similarity=0.037 Sum_probs=59.9
Q ss_pred EEEEEEccCCCcHHHHHHHHHccccccc--cccc---EEEEEEeCCcccH--HHHHHHHHHHhcCCCCCCCCHHHHHHHH
Q 007817 197 CVIPIVGMAGAGKTMLAREVYNDRAVQN--FKFD---VKAWVSVSDDFDV--LRISRALLESITSTNCDFKTLNEVQVKL 269 (588)
Q Consensus 197 ~vv~I~G~gGiGKTtLA~~v~~~~~~~~--~~f~---~~~wv~v~~~~~~--~~~~~~il~~l~~~~~~~~~~~~l~~~l 269 (588)
.+++|+|+.|.|||||++.+........ ..++ .+.++ .+.... ..+...+... ........+...-.+
T Consensus 28 e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~i~~~--~q~~~~~~~tv~~nl~~~---~~~~LS~G~~~rv~l 102 (166)
T cd03223 28 DRLLITGPSGTGKSSLFRALAGLWPWGSGRIGMPEGEDLLFL--PQRPYLPLGTLREQLIYP---WDDVLSGGEQQRLAF 102 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCCceEEEE--CCCCccccccHHHHhhcc---CCCCCCHHHHHHHHH
Confidence 5899999999999999999988653211 0111 11222 222111 1222222210 111222233334456
Q ss_pred HHHhcCCceeEEeccccc-cChhHHHHhhcccCCCCCCcEEEEeecchhhh
Q 007817 270 RIIVDGKKFLLVLDDVWN-ENYNLWEILKAPFMAGARNSKIIVTTCHSNVA 319 (588)
Q Consensus 270 ~~~l~~k~~LLVlDdv~~-~~~~~~~~l~~~l~~~~~gs~ilvTTR~~~v~ 319 (588)
...+-.++=++++|+--. -+......+...+... +..||++|.+....
T Consensus 103 aral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~--~~tiiivsh~~~~~ 151 (166)
T cd03223 103 ARLLLHKPKFVFLDEATSALDEESEDRLYQLLKEL--GITVISVGHRPSLW 151 (166)
T ss_pred HHHHHcCCCEEEEECCccccCHHHHHHHHHHHHHh--CCEEEEEeCChhHH
Confidence 666667788889997532 1222223332222222 35688888776654
No 207
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=96.61 E-value=0.0098 Score=55.87 Aligned_cols=88 Identities=17% Similarity=0.134 Sum_probs=52.1
Q ss_pred eEEEEEEccCCCcHHHHHHHHHcccccccccccEEEEEEeCC-cccHHHHHHHHHHHhcCCCC---CCCCHHH-HHHHHH
Q 007817 196 FCVIPIVGMAGAGKTMLAREVYNDRAVQNFKFDVKAWVSVSD-DFDVLRISRALLESITSTNC---DFKTLNE-VQVKLR 270 (588)
Q Consensus 196 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~wv~v~~-~~~~~~~~~~il~~l~~~~~---~~~~~~~-l~~~l~ 270 (588)
+.++.++|+.|+||||.+.+++.....++ ..+..++... .....+-++...+.++.+.. ...+..+ +...+.
T Consensus 1 p~vi~lvGptGvGKTTt~aKLAa~~~~~~---~~v~lis~D~~R~ga~eQL~~~a~~l~vp~~~~~~~~~~~~~~~~~l~ 77 (196)
T PF00448_consen 1 PKVIALVGPTGVGKTTTIAKLAARLKLKG---KKVALISADTYRIGAVEQLKTYAEILGVPFYVARTESDPAEIAREALE 77 (196)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHHHHTT-----EEEEEESTSSTHHHHHHHHHHHHHTEEEEESSTTSCHHHHHHHHHH
T ss_pred CEEEEEECCCCCchHhHHHHHHHHHhhcc---ccceeecCCCCCccHHHHHHHHHHHhccccchhhcchhhHHHHHHHHH
Confidence 37999999999999999988887665432 3455666542 23455667777777765421 2223333 333344
Q ss_pred HHhcCCceeEEecccc
Q 007817 271 IIVDGKKFLLVLDDVW 286 (588)
Q Consensus 271 ~~l~~k~~LLVlDdv~ 286 (588)
..-..+.=++++|=.-
T Consensus 78 ~~~~~~~D~vlIDT~G 93 (196)
T PF00448_consen 78 KFRKKGYDLVLIDTAG 93 (196)
T ss_dssp HHHHTTSSEEEEEE-S
T ss_pred HHhhcCCCEEEEecCC
Confidence 3323334478888653
No 208
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=96.60 E-value=0.0063 Score=59.66 Aligned_cols=81 Identities=22% Similarity=0.233 Sum_probs=48.7
Q ss_pred eEEEEEEccCCCcHHHHHHHHHcccccccccccEEEEEEeCCcccHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhcC
Q 007817 196 FCVIPIVGMAGAGKTMLAREVYNDRAVQNFKFDVKAWVSVSDDFDVLRISRALLESITSTNCDFKTLNEVQVKLRIIVDG 275 (588)
Q Consensus 196 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~il~~l~~~~~~~~~~~~l~~~l~~~l~~ 275 (588)
..-+.++|.+|+|||.||.++.+... +. .+ .+.++++ .++..++...... .. ....|.+.+ .
T Consensus 105 ~~nl~l~G~~G~GKThLa~Ai~~~l~-~~-g~-sv~f~~~------~el~~~Lk~~~~~-----~~---~~~~l~~~l-~ 166 (254)
T COG1484 105 GENLVLLGPPGVGKTHLAIAIGNELL-KA-GI-SVLFITA------PDLLSKLKAAFDE-----GR---LEEKLLREL-K 166 (254)
T ss_pred CCcEEEECCCCCcHHHHHHHHHHHHH-Hc-CC-eEEEEEH------HHHHHHHHHHHhc-----Cc---hHHHHHHHh-h
Confidence 35789999999999999999999876 32 23 3444443 3455555554432 11 111222211 2
Q ss_pred CceeEEeccccccChhHHH
Q 007817 276 KKFLLVLDDVWNENYNLWE 294 (588)
Q Consensus 276 k~~LLVlDdv~~~~~~~~~ 294 (588)
+-=||||||+-......|.
T Consensus 167 ~~dlLIiDDlG~~~~~~~~ 185 (254)
T COG1484 167 KVDLLIIDDIGYEPFSQEE 185 (254)
T ss_pred cCCEEEEecccCccCCHHH
Confidence 3459999999654444443
No 209
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=96.59 E-value=0.0015 Score=69.67 Aligned_cols=52 Identities=17% Similarity=0.294 Sum_probs=41.2
Q ss_pred ceeechhhHHHHHHHHhcCCCCCCCCeEEEEEEccCCCcHHHHHHHHHcccc
Q 007817 170 AVYGRDEDKARMLEMVLSDDPTTDANFCVIPIVGMAGAGKTMLAREVYNDRA 221 (588)
Q Consensus 170 ~~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~ 221 (588)
+++|.++.+++|++.|..........-+++.++||+|+||||||+.+.+-.+
T Consensus 77 d~yGlee~ieriv~~l~~Aa~gl~~~~~IL~LvGPpG~GKSsLa~~la~~le 128 (644)
T PRK15455 77 EFYGMEEAIEQIVSYFRHAAQGLEEKKQILYLLGPVGGGKSSLAERLKSLME 128 (644)
T ss_pred cccCcHHHHHHHHHHHHHHHHhcCCCCceEEEecCCCCCchHHHHHHHHHHH
Confidence 5899999999999999332211223457999999999999999999988554
No 210
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=96.58 E-value=0.026 Score=61.19 Aligned_cols=164 Identities=18% Similarity=0.174 Sum_probs=90.4
Q ss_pred CCceeechhhHHHHHHHHhcCCCCCCCCeEEEEEEccCCCcHHHHHHHHHcccccccccccEEEEEEeCCcccHHHHHHH
Q 007817 168 ERAVYGRDEDKARMLEMVLSDDPTTDANFCVIPIVGMAGAGKTMLAREVYNDRAVQNFKFDVKAWVSVSDDFDVLRISRA 247 (588)
Q Consensus 168 ~~~~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~ 247 (588)
..+.+|.++-+++|++++.-..--+.-+-++++.+|++|||||.+|+.++.-...+ +|. ++++.-.|..+|
T Consensus 410 deDHYgm~dVKeRILEfiAV~kLrgs~qGkIlCf~GPPGVGKTSI~kSIA~ALnRk--FfR----fSvGG~tDvAeI--- 480 (906)
T KOG2004|consen 410 DEDHYGMEDVKERILEFIAVGKLRGSVQGKILCFVGPPGVGKTSIAKSIARALNRK--FFR----FSVGGMTDVAEI--- 480 (906)
T ss_pred cccccchHHHHHHHHHHHHHHhhcccCCCcEEEEeCCCCCCcccHHHHHHHHhCCc--eEE----EeccccccHHhh---
Confidence 34568999999999999865432233456899999999999999999999866433 332 344444343332
Q ss_pred HHHHhcCCCC--CCCCHHHHHHHHHHHhcCCceeEEeccccccCh----hHHHHhhcccCCC-------------CCCcE
Q 007817 248 LLESITSTNC--DFKTLNEVQVKLRIIVDGKKFLLVLDDVWNENY----NLWEILKAPFMAG-------------ARNSK 308 (588)
Q Consensus 248 il~~l~~~~~--~~~~~~~l~~~l~~~l~~k~~LLVlDdv~~~~~----~~~~~l~~~l~~~-------------~~gs~ 308 (588)
.+... -..-...+...|+.. +...-|+.||.|+.-.. +.-..|+..|.+. -.=|+
T Consensus 481 -----kGHRRTYVGAMPGkiIq~LK~v-~t~NPliLiDEvDKlG~g~qGDPasALLElLDPEQNanFlDHYLdVp~DLSk 554 (906)
T KOG2004|consen 481 -----KGHRRTYVGAMPGKIIQCLKKV-KTENPLILIDEVDKLGSGHQGDPASALLELLDPEQNANFLDHYLDVPVDLSK 554 (906)
T ss_pred -----cccceeeeccCChHHHHHHHhh-CCCCceEEeehhhhhCCCCCCChHHHHHHhcChhhccchhhhccccccchhh
Confidence 11110 011122333344433 34456788888743110 0111122222111 11366
Q ss_pred EEEeecchhhh----hhccccceeeCCCCCHHHHHHHHHHhh
Q 007817 309 IIVTTCHSNVA----SMMGSVEHYNLKLLSDEYCWSVFVKHA 346 (588)
Q Consensus 309 ilvTTR~~~v~----~~~~~~~~~~l~~L~~~ea~~Lf~~~a 346 (588)
|++...-..+. ........|+|.+-..+|-..+-.++.
T Consensus 555 VLFicTAN~idtIP~pLlDRMEvIelsGYv~eEKv~IA~~yL 596 (906)
T KOG2004|consen 555 VLFICTANVIDTIPPPLLDRMEVIELSGYVAEEKVKIAERYL 596 (906)
T ss_pred eEEEEeccccccCChhhhhhhheeeccCccHHHHHHHHHHhh
Confidence 66433221111 112345789999998888877766655
No 211
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=96.56 E-value=0.016 Score=63.52 Aligned_cols=134 Identities=10% Similarity=0.085 Sum_probs=74.1
Q ss_pred CCceeechhhHHHHHHHHhcCCCCCCCCeEEEEEEccCCCcHHHHHHHHHcccccccccccEEEEEEeCCcccHHHHHHH
Q 007817 168 ERAVYGRDEDKARMLEMVLSDDPTTDANFCVIPIVGMAGAGKTMLAREVYNDRAVQNFKFDVKAWVSVSDDFDVLRISRA 247 (588)
Q Consensus 168 ~~~~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~ 247 (588)
...++|....+.++.+.+..... ....|.|+|..|+|||++|+.+++...... ...+.|++..-.. ..+.
T Consensus 195 ~~~liG~s~~~~~~~~~~~~~a~----~~~pvli~Ge~GtGK~~lA~~ih~~s~r~~---~pfv~i~c~~~~~--~~~~- 264 (534)
T TIGR01817 195 EDGIIGKSPAMRQVVDQARVVAR----SNSTVLLRGESGTGKELIAKAIHYLSPRAK---RPFVKVNCAALSE--TLLE- 264 (534)
T ss_pred cCceEECCHHHHHHHHHHHHHhC----cCCCEEEECCCCccHHHHHHHHHHhCCCCC---CCeEEeecCCCCH--HHHH-
Confidence 45789999999998888765432 234678999999999999999987543221 1233445443211 2211
Q ss_pred HHHHhcCCCCCC-CCHHHHHHHHHHHhcCCceeEEeccccccChhHHHHhhcccCCCC-----------CCcEEEEeecc
Q 007817 248 LLESITSTNCDF-KTLNEVQVKLRIIVDGKKFLLVLDDVWNENYNLWEILKAPFMAGA-----------RNSKIIVTTCH 315 (588)
Q Consensus 248 il~~l~~~~~~~-~~~~~l~~~l~~~l~~k~~LLVlDdv~~~~~~~~~~l~~~l~~~~-----------~gs~ilvTTR~ 315 (588)
..+.+...+. ..... ......-....-.|+||++...+......+...+..+. ...+||.||..
T Consensus 265 --~~lfg~~~~~~~~~~~--~~~g~~~~a~~GtL~ldei~~L~~~~Q~~Ll~~l~~~~~~~~~~~~~~~~~~riI~~s~~ 340 (534)
T TIGR01817 265 --SELFGHEKGAFTGAIA--QRKGRFELADGGTLFLDEIGEISPAFQAKLLRVLQEGEFERVGGNRTLKVDVRLVAATNR 340 (534)
T ss_pred --HHHcCCCCCccCCCCc--CCCCcccccCCCeEEEechhhCCHHHHHHHHHHHhcCcEEECCCCceEeecEEEEEeCCC
Confidence 1222211110 00000 00000001234568899998777666666666554321 13578887754
No 212
>cd01133 F1-ATPase_beta F1 ATP synthase beta subunit, nucleotide-binding domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The beta subunit of ATP synthase is catalytic.
Probab=96.55 E-value=0.012 Score=57.64 Aligned_cols=88 Identities=20% Similarity=0.217 Sum_probs=54.4
Q ss_pred eEEEEEEccCCCcHHHHHHHHHcccccccccccEEEEEEeCCcc-cHHHHHHHHHHHhcCCC-------CCCCCHH----
Q 007817 196 FCVIPIVGMAGAGKTMLAREVYNDRAVQNFKFDVKAWVSVSDDF-DVLRISRALLESITSTN-------CDFKTLN---- 263 (588)
Q Consensus 196 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~wv~v~~~~-~~~~~~~~il~~l~~~~-------~~~~~~~---- 263 (588)
-+-++|+|.+|+|||||++.++++...+ +-+.++++-+++.. .+.++..++.+.-.... .+.....
T Consensus 69 GQr~~If~~~G~GKTtLa~~i~~~i~~~--~~~~~V~~~iGer~~Ev~e~~~~~~~~~~~~~tvvv~~t~d~~~~~r~~~ 146 (274)
T cd01133 69 GGKIGLFGGAGVGKTVLIMELINNIAKA--HGGYSVFAGVGERTREGNDLYHEMKESGVLSKTALVYGQMNEPPGARARV 146 (274)
T ss_pred CCEEEEecCCCCChhHHHHHHHHHHHhc--CCCEEEEEEeccCcHHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHHH
Confidence 3578999999999999999999976542 23456666676554 45566666554311110 0111111
Q ss_pred -HHHHHHHHHh--c-CCceeEEeccc
Q 007817 264 -EVQVKLRIIV--D-GKKFLLVLDDV 285 (588)
Q Consensus 264 -~l~~~l~~~l--~-~k~~LLVlDdv 285 (588)
...-.+.+++ + ++.+||++||+
T Consensus 147 ~~~a~~~AEyfr~~~g~~Vl~~~Dsl 172 (274)
T cd01133 147 ALTGLTMAEYFRDEEGQDVLLFIDNI 172 (274)
T ss_pred HHHHHHHHHHHHHhcCCeEEEEEeCh
Confidence 1122345555 3 89999999998
No 213
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.55 E-value=0.02 Score=58.98 Aligned_cols=89 Identities=15% Similarity=0.137 Sum_probs=51.6
Q ss_pred eEEEEEEccCCCcHHHHHHHHHcccccccccccEEEEEEeCC-cccHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhc
Q 007817 196 FCVIPIVGMAGAGKTMLAREVYNDRAVQNFKFDVKAWVSVSD-DFDVLRISRALLESITSTNCDFKTLNEVQVKLRIIVD 274 (588)
Q Consensus 196 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~wv~v~~-~~~~~~~~~~il~~l~~~~~~~~~~~~l~~~l~~~l~ 274 (588)
-.+++++|+.|+||||++.++......+. ....+..++... .....+-++...+.++.+.....+..++...+.+ +.
T Consensus 137 g~ii~lvGptGvGKTTtiakLA~~~~~~~-G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~~~~~~~l~~~l~~-l~ 214 (374)
T PRK14722 137 GGVFALMGPTGVGKTTTTAKLAARCVMRF-GASKVALLTTDSYRIGGHEQLRIFGKILGVPVHAVKDGGDLQLALAE-LR 214 (374)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhc-CCCeEEEEecccccccHHHHHHHHHHHcCCceEecCCcccHHHHHHH-hc
Confidence 36899999999999999999988653221 123455555432 2234455555556665443333333334333433 34
Q ss_pred CCceeEEeccccc
Q 007817 275 GKKFLLVLDDVWN 287 (588)
Q Consensus 275 ~k~~LLVlDdv~~ 287 (588)
++ -++++|..-.
T Consensus 215 ~~-DlVLIDTaG~ 226 (374)
T PRK14722 215 NK-HMVLIDTIGM 226 (374)
T ss_pred CC-CEEEEcCCCC
Confidence 44 5666998743
No 214
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=96.54 E-value=0.017 Score=56.05 Aligned_cols=86 Identities=13% Similarity=0.142 Sum_probs=53.9
Q ss_pred CeEEEEEEccCCCcHHHHHHHHHcccccccccccEEEEEEeCCcccHHHHHHHHHHHhcCCCC-----------------
Q 007817 195 NFCVIPIVGMAGAGKTMLAREVYNDRAVQNFKFDVKAWVSVSDDFDVLRISRALLESITSTNC----------------- 257 (588)
Q Consensus 195 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~il~~l~~~~~----------------- 257 (588)
.-.++.|.|.+|+|||+||.++....-. .=..++|++..+.+ .++.+.+ .+++....
T Consensus 24 ~g~~~~i~G~~GsGKt~l~~~~~~~~~~---~g~~~~y~~~e~~~--~~~~~~~-~~~g~~~~~~~~~g~l~i~~~~~~~ 97 (234)
T PRK06067 24 FPSLILIEGDHGTGKSVLSQQFVYGALK---QGKKVYVITTENTS--KSYLKQM-ESVKIDISDFFLWGYLRIFPLNTEG 97 (234)
T ss_pred CCcEEEEECCCCCChHHHHHHHHHHHHh---CCCEEEEEEcCCCH--HHHHHHH-HHCCCChhHHHhCCCceEEeccccc
Confidence 4579999999999999999998654322 23468888887653 3444432 22221100
Q ss_pred ---CCCCHHHHHHHHHHHhcC-CceeEEecccc
Q 007817 258 ---DFKTLNEVQVKLRIIVDG-KKFLLVLDDVW 286 (588)
Q Consensus 258 ---~~~~~~~l~~~l~~~l~~-k~~LLVlDdv~ 286 (588)
.....+.+...+...+.. +.-++|+|.+-
T Consensus 98 ~~~~~~~~~~ll~~l~~~i~~~~~~~iviDs~t 130 (234)
T PRK06067 98 FEWNSTLANKLLELIIEFIKSKREDVIIIDSLT 130 (234)
T ss_pred cccCcchHHHHHHHHHHHHHhcCCCEEEEecHH
Confidence 112335566666666653 56689999874
No 215
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=96.54 E-value=0.025 Score=55.12 Aligned_cols=144 Identities=13% Similarity=0.108 Sum_probs=74.2
Q ss_pred EEEEEccCCCcHHHHHHHHHccccccc---------ccccEEEEEEeCCccc-HHHHHHHHHHHhcCCC-----------
Q 007817 198 VIPIVGMAGAGKTMLAREVYNDRAVQN---------FKFDVKAWVSVSDDFD-VLRISRALLESITSTN----------- 256 (588)
Q Consensus 198 vv~I~G~gGiGKTtLA~~v~~~~~~~~---------~~f~~~~wv~v~~~~~-~~~~~~~il~~l~~~~----------- 256 (588)
+..|+|++|+|||+||..++-...... ..-..+++++..++.+ +.+-+..+...+....
T Consensus 3 ~~ll~g~~G~GKS~lal~la~~va~G~~~~g~~~~~~~~~~Vlyi~~Ed~~~~i~~Rl~~i~~~~~~~~~~~rl~~~~g~ 82 (239)
T cd01125 3 VSALVAPGGTGKSSLLLVLALAMALGKNLFGGGLKVTEPGRVVYLSAEDPREEIHRRLEAILQHLEPDDAGDRLFIDSGR 82 (239)
T ss_pred eeEEEcCCCCCHHHHHHHHHHHHhcCccccCCccccCCCceEEEEECCCCHHHHHHHHHHHHhhcCCcCcccceEEeccC
Confidence 567999999999999998876432111 0122456667666543 3333444444332110
Q ss_pred -CC----C---CCHHHHHHHHHH-HhcCCceeEEeccccc------cChhHHHHhhcccCC--CCCCcEEEEeecchhhh
Q 007817 257 -CD----F---KTLNEVQVKLRI-IVDGKKFLLVLDDVWN------ENYNLWEILKAPFMA--GARNSKIIVTTCHSNVA 319 (588)
Q Consensus 257 -~~----~---~~~~~l~~~l~~-~l~~k~~LLVlDdv~~------~~~~~~~~l~~~l~~--~~~gs~ilvTTR~~~v~ 319 (588)
.. . .........+.+ ....+.-+||+|-+-. .+......+...+.. ...|+.||+++....-.
T Consensus 83 ~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~lvviDpl~~~~~~~~~d~~~~~~~~~~L~~~a~~~g~avl~v~H~~K~~ 162 (239)
T cd01125 83 IQPISIAREGRIIVVPEFERIIEQLLIRRIDLVVIDPLVSFHGVSENDNGAMDAVIKALRRIAAQTGAAILLVHHVRKGS 162 (239)
T ss_pred CCceecccCCcccccHHHHHHHHHHHhcCCCEEEECChHHhCCCCcCCHHHHHHHHHHHHHHHHHhCCEEEEEeccCccc
Confidence 00 0 001122223333 3345678999997631 222333333333322 23477788887654221
Q ss_pred h--------hcc-------ccceeeCCCCCHHHHHHH
Q 007817 320 S--------MMG-------SVEHYNLKLLSDEYCWSV 341 (588)
Q Consensus 320 ~--------~~~-------~~~~~~l~~L~~~ea~~L 341 (588)
. ..+ ..-.+.+.+++++++.++
T Consensus 163 ~~~~~~~~~~rGssal~~~~r~~~~l~~~~~~~~~~~ 199 (239)
T cd01125 163 AKDGDTQEAARGASALVDGARWVRALTRMTSEEAEKM 199 (239)
T ss_pred ccCcccccccCcHHHHhcccceEEEEeeCCHHHHHhc
Confidence 1 001 123577888888887763
No 216
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=96.53 E-value=0.014 Score=53.82 Aligned_cols=114 Identities=17% Similarity=0.167 Sum_probs=59.9
Q ss_pred EEEEEEccCCCcHHHHHHHHHcccc-c--cc--cccc--EEEEEEeCCcccHHHHHHHHHHHhcCCCC----CCC--C-H
Q 007817 197 CVIPIVGMAGAGKTMLAREVYNDRA-V--QN--FKFD--VKAWVSVSDDFDVLRISRALLESITSTNC----DFK--T-L 262 (588)
Q Consensus 197 ~vv~I~G~gGiGKTtLA~~v~~~~~-~--~~--~~f~--~~~wv~v~~~~~~~~~~~~il~~l~~~~~----~~~--~-~ 262 (588)
.+++|+|+.|+|||||.+.+..+.- + .. ..|. ...|+ .+ .+.+..++.... ... + .
T Consensus 22 ~~~~l~G~nG~GKSTLl~~il~~~G~v~~~~~~~~~~~~~~~~~--~q--------~~~l~~~~L~~~~~~~~~~~LSgG 91 (176)
T cd03238 22 VLVVVTGVSGSGKSTLVNEGLYASGKARLISFLPKFSRNKLIFI--DQ--------LQFLIDVGLGYLTLGQKLSTLSGG 91 (176)
T ss_pred CEEEEECCCCCCHHHHHHHHhhcCCcEEECCcccccccccEEEE--hH--------HHHHHHcCCCccccCCCcCcCCHH
Confidence 5899999999999999998863211 0 00 0010 12222 11 345555553221 111 1 1
Q ss_pred HHHHHHHHHHhcCC--ceeEEeccccc-cChhHHHHhhcccCC-CCCCcEEEEeecchhhhh
Q 007817 263 NEVQVKLRIIVDGK--KFLLVLDDVWN-ENYNLWEILKAPFMA-GARNSKIIVTTCHSNVAS 320 (588)
Q Consensus 263 ~~l~~~l~~~l~~k--~~LLVlDdv~~-~~~~~~~~l~~~l~~-~~~gs~ilvTTR~~~v~~ 320 (588)
+...-.+...+-.+ +-++++|+.-. -+....+.+...+.. ...|..||++|.+.....
T Consensus 92 q~qrl~laral~~~~~p~llLlDEPt~~LD~~~~~~l~~~l~~~~~~g~tvIivSH~~~~~~ 153 (176)
T cd03238 92 ELQRVKLASELFSEPPGTLFILDEPSTGLHQQDINQLLEVIKGLIDLGNTVILIEHNLDVLS 153 (176)
T ss_pred HHHHHHHHHHHhhCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHH
Confidence 22233455556566 77888898632 222333333333322 124677888888876654
No 217
>TIGR02239 recomb_RAD51 DNA repair protein RAD51. This eukaryotic sequence family consists of RAD51, a protein involved in DNA homologous recombination and repair. It is similar in sequence the exclusively meiotic recombinase DMC1 (TIGR02238), to archaeal families RadA (TIGR02236) and RadB (TIGR02237), and to bacterial RecA (TIGR02012).
Probab=96.53 E-value=0.011 Score=59.79 Aligned_cols=58 Identities=17% Similarity=0.142 Sum_probs=39.9
Q ss_pred CeEEEEEEccCCCcHHHHHHHHHcccccc---cccccEEEEEEeCCcccHHHHHHHHHHHhc
Q 007817 195 NFCVIPIVGMAGAGKTMLAREVYNDRAVQ---NFKFDVKAWVSVSDDFDVLRISRALLESIT 253 (588)
Q Consensus 195 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~---~~~f~~~~wv~v~~~~~~~~~~~~il~~l~ 253 (588)
.-.++.|+|.+|+|||+|+..++...... +..-..++|++....++..++ .++++.++
T Consensus 95 ~g~i~~i~G~~g~GKT~l~~~~~~~~~~~~~~Gg~~~~vvyIdtE~~f~~~Rl-~~ia~~~~ 155 (316)
T TIGR02239 95 TGSITEIFGEFRTGKTQLCHTLAVTCQLPIDQGGGEGKALYIDTEGTFRPERL-LAIAERYG 155 (316)
T ss_pred CCeEEEEECCCCCCcCHHHHHHHHHHhhhhhcCCCCceEEEEECCCCCCHHHH-HHHHHHcC
Confidence 45799999999999999999887633211 101235789999887777653 44455443
No 218
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=96.53 E-value=0.014 Score=59.40 Aligned_cols=58 Identities=16% Similarity=0.244 Sum_probs=41.3
Q ss_pred CeEEEEEEccCCCcHHHHHHHHHccccccc---ccccEEEEEEeCCcccHHHHHHHHHHHhc
Q 007817 195 NFCVIPIVGMAGAGKTMLAREVYNDRAVQN---FKFDVKAWVSVSDDFDVLRISRALLESIT 253 (588)
Q Consensus 195 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~---~~f~~~~wv~v~~~~~~~~~~~~il~~l~ 253 (588)
...++-|+|++|+|||+|+.+++....... ..-..++||+....++..++.+ +++.++
T Consensus 101 ~g~vtei~G~~GsGKT~l~~~~~~~~~~~~~~gg~~~~~~yi~te~~f~~~rl~~-~~~~~g 161 (317)
T PRK04301 101 TQSITEFYGEFGSGKTQICHQLAVNVQLPEEKGGLEGKAVYIDTEGTFRPERIEQ-MAEALG 161 (317)
T ss_pred CCcEEEEECCCCCCHhHHHHHHHHHhccccccCCCCceEEEEeCCCCcCHHHHHH-HHHHcC
Confidence 457999999999999999999986543211 0114789999999888776654 344443
No 219
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=96.52 E-value=0.022 Score=60.15 Aligned_cols=87 Identities=17% Similarity=0.113 Sum_probs=49.1
Q ss_pred CeEEEEEEccCCCcHHHHHHHHHcccccccccccEEEEEEeCC-cccHHHHHHHHHHHhcCCCCC---CCCHHHHHHHHH
Q 007817 195 NFCVIPIVGMAGAGKTMLAREVYNDRAVQNFKFDVKAWVSVSD-DFDVLRISRALLESITSTNCD---FKTLNEVQVKLR 270 (588)
Q Consensus 195 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~wv~v~~-~~~~~~~~~~il~~l~~~~~~---~~~~~~l~~~l~ 270 (588)
.+.++.++|++|+||||+|..++.....++ + .+.-|++.. .....+.+..+...++.+... ..+.........
T Consensus 94 ~p~vI~lvG~~GsGKTTtaakLA~~L~~~g--~-kV~lV~~D~~R~aa~eQL~~la~~~gvp~~~~~~~~d~~~i~~~al 170 (437)
T PRK00771 94 KPQTIMLVGLQGSGKTTTAAKLARYFKKKG--L-KVGLVAADTYRPAAYDQLKQLAEKIGVPFYGDPDNKDAVEIAKEGL 170 (437)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHHcC--C-eEEEecCCCCCHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHHH
Confidence 568999999999999999999988765432 3 233344322 122344556666665543211 122223222222
Q ss_pred HHhcCCceeEEeccc
Q 007817 271 IIVDGKKFLLVLDDV 285 (588)
Q Consensus 271 ~~l~~k~~LLVlDdv 285 (588)
+.+.+. -++|+|..
T Consensus 171 ~~~~~~-DvVIIDTA 184 (437)
T PRK00771 171 EKFKKA-DVIIVDTA 184 (437)
T ss_pred HHhhcC-CEEEEECC
Confidence 223333 56888876
No 220
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=96.52 E-value=0.0028 Score=58.06 Aligned_cols=80 Identities=14% Similarity=0.206 Sum_probs=43.0
Q ss_pred EEEEEccCCCcHHHHHHHHHcccccccccccEEEEEEeCCcccHHHHHHHHHHHhcCCCCCC---CCHHHHHHHHHHHhc
Q 007817 198 VIPIVGMAGAGKTMLAREVYNDRAVQNFKFDVKAWVSVSDDFDVLRISRALLESITSTNCDF---KTLNEVQVKLRIIVD 274 (588)
Q Consensus 198 vv~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~il~~l~~~~~~~---~~~~~l~~~l~~~l~ 274 (588)
++.|.|.+|+||||+|..+...... ..+++.-...++ .+..+.|..........- .....+...+.....
T Consensus 3 ~ili~G~~~sGKS~~a~~l~~~~~~------~~~~iat~~~~~-~e~~~ri~~h~~~R~~~w~t~E~~~~l~~~i~~~~~ 75 (170)
T PRK05800 3 LILVTGGARSGKSRFAERLAAQSGL------QVLYIATAQPFD-DEMAARIAHHRQRRPAHWQTVEEPLDLAELLRADAA 75 (170)
T ss_pred EEEEECCCCccHHHHHHHHHHHcCC------CcEeCcCCCCCh-HHHHHHHHHHHhcCCCCCeEecccccHHHHHHhhcC
Confidence 6899999999999999999875321 123344333332 344455544333222211 111223334443333
Q ss_pred CCceeEEeccc
Q 007817 275 GKKFLLVLDDV 285 (588)
Q Consensus 275 ~k~~LLVlDdv 285 (588)
+ .-++++|.+
T Consensus 76 ~-~~~VlID~L 85 (170)
T PRK05800 76 P-GRCVLVDCL 85 (170)
T ss_pred C-CCEEEehhH
Confidence 2 337889986
No 221
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=96.51 E-value=0.017 Score=58.95 Aligned_cols=131 Identities=15% Similarity=0.103 Sum_probs=67.8
Q ss_pred eeechhhHHHHHHHHhcCCCCCCCCeEEEEEEccCCCcHHHHHHHHHcccccccccccEEEEEEeCCcccHHHHHHHHHH
Q 007817 171 VYGRDEDKARMLEMVLSDDPTTDANFCVIPIVGMAGAGKTMLAREVYNDRAVQNFKFDVKAWVSVSDDFDVLRISRALLE 250 (588)
Q Consensus 171 ~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~il~ 250 (588)
++|+...+.++.+.+..-.. ...-|.|+|..|+||+++|+.+++...... ...+-|++..-. ...+..
T Consensus 1 liG~S~~m~~~~~~~~~~a~----~~~pVLI~GE~GtGK~~lAr~iH~~s~r~~---~pfv~vnc~~~~--~~~l~~--- 68 (329)
T TIGR02974 1 LIGESNAFLEVLEQVSRLAP----LDRPVLIIGERGTGKELIAARLHYLSKRWQ---GPLVKLNCAALS--ENLLDS--- 68 (329)
T ss_pred CCcCCHHHHHHHHHHHHHhC----CCCCEEEECCCCChHHHHHHHHHHhcCccC---CCeEEEeCCCCC--hHHHHH---
Confidence 36777777777776655432 234678999999999999999986543221 122334444321 122211
Q ss_pred HhcCCCCC-CCCHHHHHHHHHHHhcCCceeEEeccccccChhHHHHhhcccCCCC-----------CCcEEEEeecc
Q 007817 251 SITSTNCD-FKTLNEVQVKLRIIVDGKKFLLVLDDVWNENYNLWEILKAPFMAGA-----------RNSKIIVTTCH 315 (588)
Q Consensus 251 ~l~~~~~~-~~~~~~l~~~l~~~l~~k~~LLVlDdv~~~~~~~~~~l~~~l~~~~-----------~gs~ilvTTR~ 315 (588)
.+.+...+ ....... ..-..-....=.|+||++...+......+...+..+. ...+||.||..
T Consensus 69 ~lfG~~~g~~~ga~~~--~~G~~~~a~gGtL~Ldei~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiI~at~~ 143 (329)
T TIGR02974 69 ELFGHEAGAFTGAQKR--HQGRFERADGGTLFLDELATASLLVQEKLLRVIEYGEFERVGGSQTLQVDVRLVCATNA 143 (329)
T ss_pred HHhccccccccCcccc--cCCchhhCCCCEEEeCChHhCCHHHHHHHHHHHHcCcEEecCCCceeccceEEEEechh
Confidence 11111110 0000000 0000111234568999997766666666655553321 23578888753
No 222
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=96.50 E-value=0.03 Score=59.21 Aligned_cols=85 Identities=14% Similarity=0.122 Sum_probs=48.5
Q ss_pred EEEEEEccCCCcHHHHHHHHHcccc-cccccccEEEEEEeCCcc-cHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhc
Q 007817 197 CVIPIVGMAGAGKTMLAREVYNDRA-VQNFKFDVKAWVSVSDDF-DVLRISRALLESITSTNCDFKTLNEVQVKLRIIVD 274 (588)
Q Consensus 197 ~vv~I~G~gGiGKTtLA~~v~~~~~-~~~~~f~~~~wv~v~~~~-~~~~~~~~il~~l~~~~~~~~~~~~l~~~l~~~l~ 274 (588)
++++++|++|+||||++..++.... .. .-..+..|+....- ...+-+....+.++.+.....+..++...+... .
T Consensus 222 ~~i~~vGptGvGKTTt~~kLA~~~~~~~--~g~~V~li~~D~~r~~a~eqL~~~a~~~~vp~~~~~~~~~l~~~l~~~-~ 298 (424)
T PRK05703 222 GVVALVGPTGVGKTTTLAKLAARYALLY--GKKKVALITLDTYRIGAVEQLKTYAKIMGIPVEVVYDPKELAKALEQL-R 298 (424)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHHhc--CCCeEEEEECCccHHHHHHHHHHHHHHhCCceEccCCHHhHHHHHHHh-C
Confidence 5899999999999999988876554 22 12345556654321 122233333444443332333445555555442 2
Q ss_pred CCceeEEeccc
Q 007817 275 GKKFLLVLDDV 285 (588)
Q Consensus 275 ~k~~LLVlDdv 285 (588)
..=+|++|..
T Consensus 299 -~~DlVlIDt~ 308 (424)
T PRK05703 299 -DCDVILIDTA 308 (424)
T ss_pred -CCCEEEEeCC
Confidence 3568889966
No 223
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=96.49 E-value=0.019 Score=51.05 Aligned_cols=104 Identities=17% Similarity=0.147 Sum_probs=57.6
Q ss_pred EEEEEEccCCCcHHHHHHHHHcccccccccccEEEEEEeCCcccHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhcCC
Q 007817 197 CVIPIVGMAGAGKTMLAREVYNDRAVQNFKFDVKAWVSVSDDFDVLRISRALLESITSTNCDFKTLNEVQVKLRIIVDGK 276 (588)
Q Consensus 197 ~vv~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~il~~l~~~~~~~~~~~~l~~~l~~~l~~k 276 (588)
.+++|+|+.|.|||||++.+...... ....+|+.-.. .+.... .....+...-.+...+-.+
T Consensus 27 e~~~i~G~nGsGKStLl~~l~G~~~~----~~G~i~~~~~~-------------~i~~~~-~lS~G~~~rv~laral~~~ 88 (144)
T cd03221 27 DRIGLVGRNGAGKSTLLKLIAGELEP----DEGIVTWGSTV-------------KIGYFE-QLSGGEKMRLALAKLLLEN 88 (144)
T ss_pred CEEEEECCCCCCHHHHHHHHcCCCCC----CceEEEECCeE-------------EEEEEc-cCCHHHHHHHHHHHHHhcC
Confidence 58999999999999999999886532 23334432100 000000 0122223333456666677
Q ss_pred ceeEEeccccc-cChhHHHHhhcccCCCCCCcEEEEeecchhhhh
Q 007817 277 KFLLVLDDVWN-ENYNLWEILKAPFMAGARNSKIIVTTCHSNVAS 320 (588)
Q Consensus 277 ~~LLVlDdv~~-~~~~~~~~l~~~l~~~~~gs~ilvTTR~~~v~~ 320 (588)
+-++++|+.-. -+......+...+... +..||++|.+.+...
T Consensus 89 p~illlDEP~~~LD~~~~~~l~~~l~~~--~~til~~th~~~~~~ 131 (144)
T cd03221 89 PNLLLLDEPTNHLDLESIEALEEALKEY--PGTVILVSHDRYFLD 131 (144)
T ss_pred CCEEEEeCCccCCCHHHHHHHHHHHHHc--CCEEEEEECCHHHHH
Confidence 88999998632 2223333333333222 246888887765554
No 224
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=96.47 E-value=0.0073 Score=64.07 Aligned_cols=97 Identities=16% Similarity=0.244 Sum_probs=61.3
Q ss_pred CceeechhhHHHHHHHHhcCCC------CCCCCeEEEEEEccCCCcHHHHHHHHHcccccccccccEEEEEEeCCcccHH
Q 007817 169 RAVYGRDEDKARMLEMVLSDDP------TTDANFCVIPIVGMAGAGKTMLAREVYNDRAVQNFKFDVKAWVSVSDDFDVL 242 (588)
Q Consensus 169 ~~~vGR~~e~~~l~~~L~~~~~------~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~wv~v~~~~~~~ 242 (588)
.++=|.+..+.++.+++..-.. .+-..++=|.+||++|.|||.||+.++++..+- | +.++.+
T Consensus 190 ~diGG~d~~~~el~~li~~i~~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAgel~vP---f-----~~isAp---- 257 (802)
T KOG0733|consen 190 SDIGGLDKTLAELCELIIHIKHPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAGELGVP---F-----LSISAP---- 257 (802)
T ss_pred hhccChHHHHHHHHHHHHHhcCchhHhhcCCCCCCceeeeCCCCccHHHHHHHHhhhcCCc---e-----Eeecch----
Confidence 3456788887777777654221 122345678899999999999999999977652 2 223222
Q ss_pred HHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhcCCceeEEecccc
Q 007817 243 RISRALLESITSTNCDFKTLNEVQVKLRIIVDGKKFLLVLDDVW 286 (588)
Q Consensus 243 ~~~~~il~~l~~~~~~~~~~~~l~~~l~~~l~~k~~LLVlDdv~ 286 (588)
+|+..+. ..+.+.+.+...+....-+++++||+++
T Consensus 258 ----eivSGvS-----GESEkkiRelF~~A~~~aPcivFiDeID 292 (802)
T KOG0733|consen 258 ----EIVSGVS-----GESEKKIRELFDQAKSNAPCIVFIDEID 292 (802)
T ss_pred ----hhhcccC-----cccHHHHHHHHHHHhccCCeEEEeeccc
Confidence 2232222 2233444444445556789999999985
No 225
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=96.47 E-value=0.011 Score=60.48 Aligned_cols=134 Identities=15% Similarity=0.073 Sum_probs=72.3
Q ss_pred ceeechhhHHHHHHHHhcCCCCCCCCeEEEEEEccCCCcHHHHHHHHHcccccccccccEEEEEEeCCcccHHHHHHHHH
Q 007817 170 AVYGRDEDKARMLEMVLSDDPTTDANFCVIPIVGMAGAGKTMLAREVYNDRAVQNFKFDVKAWVSVSDDFDVLRISRALL 249 (588)
Q Consensus 170 ~~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~il 249 (588)
.++|+...+.++.+.+..-.. ...-|.|+|..|+||+++|+.+....... -...+.|++..-. ...+...+.
T Consensus 7 ~liG~S~~~~~~~~~i~~~a~----~~~pVlI~GE~GtGK~~lA~~iH~~s~r~---~~pfv~v~c~~~~-~~~~~~~lf 78 (326)
T PRK11608 7 NLLGEANSFLEVLEQVSRLAP----LDKPVLIIGERGTGKELIASRLHYLSSRW---QGPFISLNCAALN-ENLLDSELF 78 (326)
T ss_pred ccEECCHHHHHHHHHHHHHhC----CCCCEEEECCCCCcHHHHHHHHHHhCCcc---CCCeEEEeCCCCC-HHHHHHHHc
Confidence 588999888888888765432 23467899999999999999998643211 1123345555422 222222222
Q ss_pred HHhcCCCCCCCCHHHHHHHHHHHhcCCceeEEeccccccChhHHHHhhcccCCCC-----------CCcEEEEeecch
Q 007817 250 ESITSTNCDFKTLNEVQVKLRIIVDGKKFLLVLDDVWNENYNLWEILKAPFMAGA-----------RNSKIIVTTCHS 316 (588)
Q Consensus 250 ~~l~~~~~~~~~~~~l~~~l~~~l~~k~~LLVlDdv~~~~~~~~~~l~~~l~~~~-----------~gs~ilvTTR~~ 316 (588)
..-.+...+... .....+ -....=.|+||||..........+...+..+. ...+||.||...
T Consensus 79 g~~~~~~~g~~~--~~~g~l---~~a~gGtL~l~~i~~L~~~~Q~~L~~~l~~~~~~~~g~~~~~~~~~RiI~~s~~~ 151 (326)
T PRK11608 79 GHEAGAFTGAQK--RHPGRF---ERADGGTLFLDELATAPMLVQEKLLRVIEYGELERVGGSQPLQVNVRLVCATNAD 151 (326)
T ss_pred cccccccCCccc--ccCCch---hccCCCeEEeCChhhCCHHHHHHHHHHHhcCcEEeCCCCceeeccEEEEEeCchh
Confidence 111000000000 000011 11223458899998777666666665553321 135788887543
No 226
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=96.45 E-value=0.0023 Score=69.20 Aligned_cols=164 Identities=19% Similarity=0.248 Sum_probs=92.2
Q ss_pred CCceeechhhHHHHHHHHhcCCCCCCCCeEEEEEEccCCCcHHHHHHHHHcccccccccccEEEEEEeCCcccHHHHHHH
Q 007817 168 ERAVYGRDEDKARMLEMVLSDDPTTDANFCVIPIVGMAGAGKTMLAREVYNDRAVQNFKFDVKAWVSVSDDFDVLRISRA 247 (588)
Q Consensus 168 ~~~~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~ 247 (588)
+.+.+|-++-+++|+++|.-..-...-.-++++++||+|+|||+|++.+++-... .|- -++++.--|..++
T Consensus 322 d~dHYGLekVKeRIlEyLAV~~l~~~~kGpILcLVGPPGVGKTSLgkSIA~al~R---kfv---R~sLGGvrDEAEI--- 392 (782)
T COG0466 322 DKDHYGLEKVKERILEYLAVQKLTKKLKGPILCLVGPPGVGKTSLGKSIAKALGR---KFV---RISLGGVRDEAEI--- 392 (782)
T ss_pred cccccCchhHHHHHHHHHHHHHHhccCCCcEEEEECCCCCCchhHHHHHHHHhCC---CEE---EEecCccccHHHh---
Confidence 3457899999999999985433222334489999999999999999999986543 231 1234433333222
Q ss_pred HHHHhcCCCC---CCCCHHHHHHHHHHHhcCCceeEEeccccccCh----hHHHHhhcccCCCCC-------------Cc
Q 007817 248 LLESITSTNC---DFKTLNEVQVKLRIIVDGKKFLLVLDDVWNENY----NLWEILKAPFMAGAR-------------NS 307 (588)
Q Consensus 248 il~~l~~~~~---~~~~~~~l~~~l~~~l~~k~~LLVlDdv~~~~~----~~~~~l~~~l~~~~~-------------gs 307 (588)
.+... +... ..+...+++ .+.+.-|++||.++.... +.-..++..|.+..+ =|
T Consensus 393 -----RGHRRTYIGamP-GrIiQ~mkk-a~~~NPv~LLDEIDKm~ss~rGDPaSALLEVLDPEQN~~F~DhYLev~yDLS 465 (782)
T COG0466 393 -----RGHRRTYIGAMP-GKIIQGMKK-AGVKNPVFLLDEIDKMGSSFRGDPASALLEVLDPEQNNTFSDHYLEVPYDLS 465 (782)
T ss_pred -----ccccccccccCC-hHHHHHHHH-hCCcCCeEEeechhhccCCCCCChHHHHHhhcCHhhcCchhhccccCccchh
Confidence 11110 1122 222222332 245677889998854221 111222233322111 13
Q ss_pred EEE-Eeecch-h-h-hhhccccceeeCCCCCHHHHHHHHHHhhc
Q 007817 308 KII-VTTCHS-N-V-ASMMGSVEHYNLKLLSDEYCWSVFVKHAF 347 (588)
Q Consensus 308 ~il-vTTR~~-~-v-~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~ 347 (588)
.|+ |||-|. + + +..+....++++.+-+++|=.++-+++..
T Consensus 466 ~VmFiaTANsl~tIP~PLlDRMEiI~lsgYt~~EKl~IAk~~Li 509 (782)
T COG0466 466 KVMFIATANSLDTIPAPLLDRMEVIRLSGYTEDEKLEIAKRHLI 509 (782)
T ss_pred heEEEeecCccccCChHHhcceeeeeecCCChHHHHHHHHHhcc
Confidence 443 444332 2 2 22234668899999999998888777653
No 227
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=96.45 E-value=0.03 Score=53.18 Aligned_cols=61 Identities=13% Similarity=0.120 Sum_probs=37.1
Q ss_pred HHHHHHHHHHhcCCceeEEecccc-ccChhHHHHhhcccCC--CCCCcEEEEeecchhhhhhcc
Q 007817 263 NEVQVKLRIIVDGKKFLLVLDDVW-NENYNLWEILKAPFMA--GARNSKIIVTTCHSNVASMMG 323 (588)
Q Consensus 263 ~~l~~~l~~~l~~k~~LLVlDdv~-~~~~~~~~~l~~~l~~--~~~gs~ilvTTR~~~v~~~~~ 323 (588)
++..-.+.+.|-..+-+|+-|+-- +-+...-+.+...+.. ...|..||+.|.++.++..+.
T Consensus 147 qqQRVAIARAL~~~P~iilADEPTgnLD~~t~~~V~~ll~~~~~~~g~tii~VTHd~~lA~~~d 210 (226)
T COG1136 147 QQQRVAIARALINNPKIILADEPTGNLDSKTAKEVLELLRELNKERGKTIIMVTHDPELAKYAD 210 (226)
T ss_pred HHHHHHHHHHHhcCCCeEEeeCccccCChHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHhCC
Confidence 333446777788889999999641 1122222233333332 234778999999999988643
No 228
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional
Probab=96.43 E-value=0.025 Score=57.75 Aligned_cols=59 Identities=20% Similarity=0.225 Sum_probs=42.3
Q ss_pred CeEEEEEEccCCCcHHHHHHHHHccccc---ccccccEEEEEEeCCcccHHHHHHHHHHHhcC
Q 007817 195 NFCVIPIVGMAGAGKTMLAREVYNDRAV---QNFKFDVKAWVSVSDDFDVLRISRALLESITS 254 (588)
Q Consensus 195 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~---~~~~f~~~~wv~v~~~~~~~~~~~~il~~l~~ 254 (588)
.-.++-|+|++|+|||+|+.+++-.... .+..-..++||+....|+..++.+ +++.++.
T Consensus 125 ~G~ItEI~G~~GsGKTql~lqlav~~qlp~~~gg~~~~vvyIdTE~tF~peRl~~-ia~~~g~ 186 (344)
T PLN03187 125 TRCITEAFGEFRSGKTQLAHTLCVTTQLPTEMGGGNGKVAYIDTEGTFRPDRIVP-IAERFGM 186 (344)
T ss_pred CCeEEEEecCCCCChhHHHHHHHHHHhcchhhCCCCceEEEEEcCCCCCHHHHHH-HHHHcCC
Confidence 4578889999999999999988643321 110124789999999998887654 4555544
No 229
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=96.40 E-value=0.0094 Score=53.56 Aligned_cols=117 Identities=15% Similarity=0.080 Sum_probs=61.7
Q ss_pred EEEEEEccCCCcHHHHHHHHHcccccccccccEEEEEEeCC---cccHHHHHHHHHHHhc---CCCC---CCCCHH----
Q 007817 197 CVIPIVGMAGAGKTMLAREVYNDRAVQNFKFDVKAWVSVSD---DFDVLRISRALLESIT---STNC---DFKTLN---- 263 (588)
Q Consensus 197 ~vv~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~wv~v~~---~~~~~~~~~~il~~l~---~~~~---~~~~~~---- 263 (588)
..|-|++..|.||||+|...+-.....+ + .+.++.+-+ ......+++.+- .+. .... ...+..
T Consensus 3 G~i~vy~g~G~Gkt~~a~g~~~ra~~~g--~-~v~~vQFlKg~~~~gE~~~l~~l~-~v~~~~~g~~~~~~~~~~~~~~~ 78 (159)
T cd00561 3 GLIQVYTGNGKGKTTAALGLALRALGHG--Y-RVGVVQFLKGGWKYGELKALERLP-NIEIHRMGRGFFWTTENDEEDIA 78 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHCC--C-eEEEEEEeCCCCccCHHHHHHhCC-CcEEEECCCCCccCCCChHHHHH
Confidence 4678888889999999977766543332 2 333444322 233344444331 110 0000 001111
Q ss_pred ---HHHHHHHHHhcC-CceeEEecccccc---ChhHHHHhhcccCCCCCCcEEEEeecchh
Q 007817 264 ---EVQVKLRIIVDG-KKFLLVLDDVWNE---NYNLWEILKAPFMAGARNSKIIVTTCHSN 317 (588)
Q Consensus 264 ---~l~~~l~~~l~~-k~~LLVlDdv~~~---~~~~~~~l~~~l~~~~~gs~ilvTTR~~~ 317 (588)
+.....++.+.. +-=|||||++-.. .....+.+...+.....+.-||+|.|+..
T Consensus 79 ~a~~~~~~a~~~~~~~~~dLlVLDEi~~a~~~gli~~~~v~~ll~~rp~~~evIlTGr~~p 139 (159)
T cd00561 79 AAAEGWAFAKEAIASGEYDLVILDEINYALGYGLLDVEEVVDLLKAKPEDLELVLTGRNAP 139 (159)
T ss_pred HHHHHHHHHHHHHhcCCCCEEEEechHhHhhCCCCCHHHHHHHHHcCCCCCEEEEECCCCC
Confidence 122233344443 4459999998321 12234455555555566788999999853
No 230
>PLN03186 DNA repair protein RAD51 homolog; Provisional
Probab=96.40 E-value=0.023 Score=58.05 Aligned_cols=59 Identities=15% Similarity=0.134 Sum_probs=42.0
Q ss_pred CeEEEEEEccCCCcHHHHHHHHHcccccc---cccccEEEEEEeCCcccHHHHHHHHHHHhcC
Q 007817 195 NFCVIPIVGMAGAGKTMLAREVYNDRAVQ---NFKFDVKAWVSVSDDFDVLRISRALLESITS 254 (588)
Q Consensus 195 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~---~~~f~~~~wv~v~~~~~~~~~~~~il~~l~~ 254 (588)
.-.++-|+|.+|+|||+|+..++-..... +..-..++||+....|+..++ .++++.++.
T Consensus 122 ~g~i~~i~G~~g~GKT~l~~~l~~~~~~~~~~gg~~g~vlyIdtE~~f~~eRl-~qia~~~~~ 183 (342)
T PLN03186 122 TGSITEIYGEFRTGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDTEGTFRPQRL-IQIAERFGL 183 (342)
T ss_pred CceEEEEECCCCCCccHHHHHHHHHhhcchhhCCCCceEEEEECCCCccHHHH-HHHHHHcCC
Confidence 45788999999999999998887543211 101236899999999888776 455665543
No 231
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=96.40 E-value=0.011 Score=53.85 Aligned_cols=116 Identities=16% Similarity=0.068 Sum_probs=61.9
Q ss_pred EEEEEEccCCCcHHHHHHHHHcccccccccccEEEEEEeCC--cccHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhc
Q 007817 197 CVIPIVGMAGAGKTMLAREVYNDRAVQNFKFDVKAWVSVSD--DFDVLRISRALLESITSTNCDFKTLNEVQVKLRIIVD 274 (588)
Q Consensus 197 ~vv~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~wv~v~~--~~~~~~~~~~il~~l~~~~~~~~~~~~l~~~l~~~l~ 274 (588)
.+++|.|+.|.|||||.+.++.... .....+++.-.+ ..+..+... ..++... +....+...-.+...+-
T Consensus 27 e~~~l~G~nGsGKSTLl~~i~G~~~----~~~G~v~~~g~~~~~~~~~~~~~---~~i~~~~-qLS~G~~qrl~laral~ 98 (163)
T cd03216 27 EVHALLGENGAGKSTLMKILSGLYK----PDSGEILVDGKEVSFASPRDARR---AGIAMVY-QLSVGERQMVEIARALA 98 (163)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCC----CCCeEEEECCEECCcCCHHHHHh---cCeEEEE-ecCHHHHHHHHHHHHHh
Confidence 5899999999999999999987543 233444443211 111111111 1111110 12222333345666667
Q ss_pred CCceeEEeccccc-cChhHHHHhhcccCC-CCCCcEEEEeecchhhhh
Q 007817 275 GKKFLLVLDDVWN-ENYNLWEILKAPFMA-GARNSKIIVTTCHSNVAS 320 (588)
Q Consensus 275 ~k~~LLVlDdv~~-~~~~~~~~l~~~l~~-~~~gs~ilvTTR~~~v~~ 320 (588)
.++-++++|+.-+ -+......+...+.. ...|..||++|.+.....
T Consensus 99 ~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~ 146 (163)
T cd03216 99 RNARLLILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISHRLDEVF 146 (163)
T ss_pred cCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHH
Confidence 7788999998632 222333333333322 123667888888766443
No 232
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=96.39 E-value=0.015 Score=65.77 Aligned_cols=135 Identities=18% Similarity=0.143 Sum_probs=74.0
Q ss_pred CceeechhhHHHHHHHHhcCCCCCCCCeEEEEEEccCCCcHHHHHHHHHcccccccccccEEEEEEeCCcccHHHHHHHH
Q 007817 169 RAVYGRDEDKARMLEMVLSDDPTTDANFCVIPIVGMAGAGKTMLAREVYNDRAVQNFKFDVKAWVSVSDDFDVLRISRAL 248 (588)
Q Consensus 169 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i 248 (588)
..++|+...+.++.+.+..-.. ...-|.|+|..|+|||++|+.+++.....+ ...+.+++..-. ...+-..+
T Consensus 376 ~~liG~S~~~~~~~~~~~~~a~----~~~pVLI~GE~GTGK~~lA~~ih~~s~r~~---~~~v~i~c~~~~-~~~~~~~l 447 (686)
T PRK15429 376 GEIIGRSEAMYSVLKQVEMVAQ----SDSTVLILGETGTGKELIARAIHNLSGRNN---RRMVKMNCAAMP-AGLLESDL 447 (686)
T ss_pred cceeecCHHHHHHHHHHHHHhC----CCCCEEEECCCCcCHHHHHHHHHHhcCCCC---CCeEEEecccCC-hhHhhhhh
Confidence 4689999888888776654321 234788999999999999999987543221 233444544321 11111122
Q ss_pred HHHhcCCCCCCCCHHHHHHHHHHHhcCCceeEEeccccccChhHHHHhhcccCCCC-----------CCcEEEEeecch
Q 007817 249 LESITSTNCDFKTLNEVQVKLRIIVDGKKFLLVLDDVWNENYNLWEILKAPFMAGA-----------RNSKIIVTTCHS 316 (588)
Q Consensus 249 l~~l~~~~~~~~~~~~l~~~l~~~l~~k~~LLVlDdv~~~~~~~~~~l~~~l~~~~-----------~gs~ilvTTR~~ 316 (588)
.....+...+.. ......+ -....=.|+||||..........+...+..+. .+.+||.||...
T Consensus 448 fg~~~~~~~g~~--~~~~g~l---e~a~~GtL~Ldei~~L~~~~Q~~L~~~l~~~~~~~~g~~~~~~~~~RiI~~t~~~ 521 (686)
T PRK15429 448 FGHERGAFTGAS--AQRIGRF---ELADKSSLFLDEVGDMPLELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNRD 521 (686)
T ss_pred cCcccccccccc--cchhhHH---HhcCCCeEEEechhhCCHHHHHHHHHHHHhCCEEeCCCCCcccceEEEEEeCCCC
Confidence 111111100100 0111111 11234579999998777666666665553221 345888888543
No 233
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=96.38 E-value=0.013 Score=56.11 Aligned_cols=24 Identities=29% Similarity=0.346 Sum_probs=21.3
Q ss_pred EEEEEccCCCcHHHHHHHHHcccc
Q 007817 198 VIPIVGMAGAGKTMLAREVYNDRA 221 (588)
Q Consensus 198 vv~I~G~gGiGKTtLA~~v~~~~~ 221 (588)
+|+|.|.+|+||||||+.+.....
T Consensus 1 IigI~G~sGSGKTTla~~L~~~l~ 24 (220)
T cd02025 1 IIGIAGSVAVGKSTTARVLQALLS 24 (220)
T ss_pred CEEeeCCCCCCHHHHHHHHHHHHh
Confidence 589999999999999999988654
No 234
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=96.38 E-value=0.026 Score=51.94 Aligned_cols=25 Identities=36% Similarity=0.402 Sum_probs=21.6
Q ss_pred EEEEEccCCCcHHHHHHHHHccccc
Q 007817 198 VIPIVGMAGAGKTMLAREVYNDRAV 222 (588)
Q Consensus 198 vv~I~G~gGiGKTtLA~~v~~~~~~ 222 (588)
++.++|++|+||||++..++.....
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~~~~~ 26 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLALYLKK 26 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH
Confidence 6789999999999999999876543
No 235
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.37 E-value=0.014 Score=63.01 Aligned_cols=71 Identities=24% Similarity=0.189 Sum_probs=48.2
Q ss_pred CeEEEEEEccCCCcHHHHHHHHHcccccccccccEEEEEEeCCcccHHHHHHHHHHHhcCCCCCCCCHHHHHHHH----H
Q 007817 195 NFCVIPIVGMAGAGKTMLAREVYNDRAVQNFKFDVKAWVSVSDDFDVLRISRALLESITSTNCDFKTLNEVQVKL----R 270 (588)
Q Consensus 195 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~il~~l~~~~~~~~~~~~l~~~l----~ 270 (588)
..+-|.|.|+.|+|||+||+.+++... +. ..-.+.+|+++.-. ....+..+..+ .
T Consensus 430 ~~~~Ill~G~~GsGKT~L~kal~~~~~-k~-~~~hv~~v~Cs~l~-------------------~~~~e~iQk~l~~vfs 488 (952)
T KOG0735|consen 430 RHGNILLNGPKGSGKTNLVKALFDYYS-KD-LIAHVEIVSCSTLD-------------------GSSLEKIQKFLNNVFS 488 (952)
T ss_pred ccccEEEeCCCCCCHhHHHHHHHHHhc-cc-cceEEEEEechhcc-------------------chhHHHHHHHHHHHHH
Confidence 446789999999999999999999876 33 45556667765421 11223333322 3
Q ss_pred HHhcCCceeEEecccc
Q 007817 271 IIVDGKKFLLVLDDVW 286 (588)
Q Consensus 271 ~~l~~k~~LLVlDdv~ 286 (588)
..+...+-+|||||++
T Consensus 489 e~~~~~PSiIvLDdld 504 (952)
T KOG0735|consen 489 EALWYAPSIIVLDDLD 504 (952)
T ss_pred HHHhhCCcEEEEcchh
Confidence 3445679999999984
No 236
>PRK10867 signal recognition particle protein; Provisional
Probab=96.35 E-value=0.023 Score=59.84 Aligned_cols=28 Identities=36% Similarity=0.361 Sum_probs=23.3
Q ss_pred CeEEEEEEccCCCcHHHHHHHHHccccc
Q 007817 195 NFCVIPIVGMAGAGKTMLAREVYNDRAV 222 (588)
Q Consensus 195 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~ 222 (588)
.+.+|.++|++|+||||++..++.....
T Consensus 99 ~p~vI~~vG~~GsGKTTtaakLA~~l~~ 126 (433)
T PRK10867 99 PPTVIMMVGLQGAGKTTTAGKLAKYLKK 126 (433)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHHHH
Confidence 4689999999999999988888775543
No 237
>PRK14974 cell division protein FtsY; Provisional
Probab=96.35 E-value=0.027 Score=57.38 Aligned_cols=99 Identities=17% Similarity=0.101 Sum_probs=52.8
Q ss_pred CeEEEEEEccCCCcHHHHHHHHHcccccccccccEEEEEEeCCcc--cHHHHHHHHHHHhcCCCC---CCCCHHH-HHHH
Q 007817 195 NFCVIPIVGMAGAGKTMLAREVYNDRAVQNFKFDVKAWVSVSDDF--DVLRISRALLESITSTNC---DFKTLNE-VQVK 268 (588)
Q Consensus 195 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~wv~v~~~~--~~~~~~~~il~~l~~~~~---~~~~~~~-l~~~ 268 (588)
++.++.++|++|+||||++..++...... .+. ++.+.. +.+ ...+-++.....++.+.. ...+... ....
T Consensus 139 ~~~vi~~~G~~GvGKTTtiakLA~~l~~~--g~~-V~li~~-Dt~R~~a~eqL~~~a~~lgv~v~~~~~g~dp~~v~~~a 214 (336)
T PRK14974 139 KPVVIVFVGVNGTGKTTTIAKLAYYLKKN--GFS-VVIAAG-DTFRAGAIEQLEEHAERLGVKVIKHKYGADPAAVAYDA 214 (336)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHc--CCe-EEEecC-CcCcHHHHHHHHHHHHHcCCceecccCCCCHHHHHHHH
Confidence 46899999999999999888888765433 232 333432 222 223344555666654321 1222222 2233
Q ss_pred HHHHhcCCceeEEecccccc--ChhHHHHhh
Q 007817 269 LRIIVDGKKFLLVLDDVWNE--NYNLWEILK 297 (588)
Q Consensus 269 l~~~l~~k~~LLVlDdv~~~--~~~~~~~l~ 297 (588)
+...-....=++++|-.... +...++.+.
T Consensus 215 i~~~~~~~~DvVLIDTaGr~~~~~~lm~eL~ 245 (336)
T PRK14974 215 IEHAKARGIDVVLIDTAGRMHTDANLMDELK 245 (336)
T ss_pred HHHHHhCCCCEEEEECCCccCCcHHHHHHHH
Confidence 33322222338999987543 233444443
No 238
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.34 E-value=0.017 Score=59.98 Aligned_cols=91 Identities=11% Similarity=0.091 Sum_probs=54.1
Q ss_pred CeEEEEEEccCCCcHHHHHHHHHcccccccc-cccEEEEEEeCCc-ccHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHH
Q 007817 195 NFCVIPIVGMAGAGKTMLAREVYNDRAVQNF-KFDVKAWVSVSDD-FDVLRISRALLESITSTNCDFKTLNEVQVKLRII 272 (588)
Q Consensus 195 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~-~f~~~~wv~v~~~-~~~~~~~~~il~~l~~~~~~~~~~~~l~~~l~~~ 272 (588)
...++.++|+.|+||||.+..++........ .-..+..+++... .....-++...+.++.+.....+...+...+...
T Consensus 173 ~~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQL~~~a~~lgvpv~~~~~~~~l~~~L~~~ 252 (388)
T PRK12723 173 KKRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQTYGDIMGIPVKAIESFKDLKEEITQS 252 (388)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHHHHHHhhcCCcceEeeCcHHHHHHHHHHh
Confidence 3579999999999999999988876542210 1123444554421 1222335555665655433344555555555543
Q ss_pred hcCCceeEEeccccc
Q 007817 273 VDGKKFLLVLDDVWN 287 (588)
Q Consensus 273 l~~k~~LLVlDdv~~ 287 (588)
.+.-++++|..-.
T Consensus 253 --~~~DlVLIDTaGr 265 (388)
T PRK12723 253 --KDFDLVLVDTIGK 265 (388)
T ss_pred --CCCCEEEEcCCCC
Confidence 4456889998744
No 239
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.33 E-value=0.018 Score=61.43 Aligned_cols=89 Identities=18% Similarity=0.100 Sum_probs=48.0
Q ss_pred CeEEEEEEccCCCcHHHHHHHHHcccccccccccEEEEEEeCC-cccHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHh
Q 007817 195 NFCVIPIVGMAGAGKTMLAREVYNDRAVQNFKFDVKAWVSVSD-DFDVLRISRALLESITSTNCDFKTLNEVQVKLRIIV 273 (588)
Q Consensus 195 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~wv~v~~-~~~~~~~~~~il~~l~~~~~~~~~~~~l~~~l~~~l 273 (588)
...+++|+|++|+||||++..+......+. ....+..++... .....+.+......++.......+...+...+...
T Consensus 349 ~G~vIaLVGPtGvGKTTtaakLAa~la~~~-~gkkVaLIdtDtyRigA~EQLk~ya~iLgv~v~~a~d~~~L~~aL~~l- 426 (559)
T PRK12727 349 RGGVIALVGPTGAGKTTTIAKLAQRFAAQH-APRDVALVTTDTQRVGGREQLHSYGRQLGIAVHEADSAESLLDLLERL- 426 (559)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHhc-CCCceEEEecccccccHHHHHHHhhcccCceeEecCcHHHHHHHHHHh-
Confidence 347999999999999999988887543321 123344454422 11122223333333332222233344455444433
Q ss_pred cCCceeEEecccc
Q 007817 274 DGKKFLLVLDDVW 286 (588)
Q Consensus 274 ~~k~~LLVlDdv~ 286 (588)
. ..=+|++|..-
T Consensus 427 ~-~~DLVLIDTaG 438 (559)
T PRK12727 427 R-DYKLVLIDTAG 438 (559)
T ss_pred c-cCCEEEecCCC
Confidence 3 35588889874
No 240
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=96.32 E-value=0.038 Score=53.38 Aligned_cols=122 Identities=17% Similarity=0.128 Sum_probs=68.7
Q ss_pred EEEEEEccCCCcHHHHHHHHHccccc-cc--ccc----------cEEEEEEeCC----cc--cH----------------
Q 007817 197 CVIPIVGMAGAGKTMLAREVYNDRAV-QN--FKF----------DVKAWVSVSD----DF--DV---------------- 241 (588)
Q Consensus 197 ~vv~I~G~gGiGKTtLA~~v~~~~~~-~~--~~f----------~~~~wv~v~~----~~--~~---------------- 241 (588)
..++|+|+.|.|||||.+.+..-... ++ ..| ..+.||+=.. .| ++
T Consensus 31 ~~~~iiGPNGaGKSTLlK~iLGll~p~~G~i~~~g~~~~~~~~~~~IgYVPQ~~~~d~~fP~tV~d~V~~g~~~~~g~~~ 110 (254)
T COG1121 31 EITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVRKRRKRLRIGYVPQKSSVDRSFPITVKDVVLLGRYGKKGWFR 110 (254)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCcCCcceEEEccccccccccCCeEEEcCcccccCCCCCcCHHHHHHccCcccccccc
Confidence 69999999999999999999873321 10 001 2355553211 11 11
Q ss_pred ------HHHHHHHHHHhcCCCC-----CCCCHHHHH-HHHHHHhcCCceeEEeccc----cccChhHHHHhhcccCCCCC
Q 007817 242 ------LRISRALLESITSTNC-----DFKTLNEVQ-VKLRIIVDGKKFLLVLDDV----WNENYNLWEILKAPFMAGAR 305 (588)
Q Consensus 242 ------~~~~~~il~~l~~~~~-----~~~~~~~l~-~~l~~~l~~k~~LLVlDdv----~~~~~~~~~~l~~~l~~~~~ 305 (588)
.+...+.++.++...- ..-+..+.+ ..+.+.|..++=||+||.- +.......-.+...+...
T Consensus 111 ~~~~~d~~~v~~aL~~Vgm~~~~~r~i~~LSGGQ~QRV~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~e-- 188 (254)
T COG1121 111 RLNKKDKEKVDEALERVGMEDLRDRQIGELSGGQKQRVLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQE-- 188 (254)
T ss_pred cccHHHHHHHHHHHHHcCchhhhCCcccccCcHHHHHHHHHHHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHHHC--
Confidence 2344445555543221 122233333 3677788899999999963 222223333333334333
Q ss_pred CcEEEEeecchhhhh
Q 007817 306 NSKIIVTTCHSNVAS 320 (588)
Q Consensus 306 gs~ilvTTR~~~v~~ 320 (588)
|..||++|.+-....
T Consensus 189 g~tIl~vtHDL~~v~ 203 (254)
T COG1121 189 GKTVLMVTHDLGLVM 203 (254)
T ss_pred CCEEEEEeCCcHHhH
Confidence 888999998765544
No 241
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=96.32 E-value=0.02 Score=57.32 Aligned_cols=132 Identities=20% Similarity=0.267 Sum_probs=70.3
Q ss_pred eechhhHHHHHHHHhcCCCCCCCCeEEEEEEccCCCcHHHHHHHHHccc-ccccccccEEE-E---EEeCCccc-----H
Q 007817 172 YGRDEDKARMLEMVLSDDPTTDANFCVIPIVGMAGAGKTMLAREVYNDR-AVQNFKFDVKA-W---VSVSDDFD-----V 241 (588)
Q Consensus 172 vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~-~~~~~~f~~~~-w---v~v~~~~~-----~ 241 (588)
-+|..+..--.++|+.+ .+..|.+.|.+|.|||-||....=.. -.+. .|..++ . +.++++.. .
T Consensus 227 ~prn~eQ~~ALdlLld~------dI~lV~L~G~AGtGKTlLALaAgleqv~e~~-~y~KiiVtRp~vpvG~dIGfLPG~e 299 (436)
T COG1875 227 RPRNAEQRVALDLLLDD------DIDLVSLGGKAGTGKTLLALAAGLEQVLERK-RYRKIIVTRPTVPVGEDIGFLPGTE 299 (436)
T ss_pred CcccHHHHHHHHHhcCC------CCCeEEeeccCCccHhHHHHHHHHHHHHHHh-hhceEEEecCCcCcccccCcCCCch
Confidence 44677777777888765 56899999999999998885442221 1112 333322 1 23333211 1
Q ss_pred H-------HHHHHHHHHhcCCCCCCCCHHHHHHHHH---------HHhcCC---ceeEEeccccccChhHHHHhhcccCC
Q 007817 242 L-------RISRALLESITSTNCDFKTLNEVQVKLR---------IIVDGK---KFLLVLDDVWNENYNLWEILKAPFMA 302 (588)
Q Consensus 242 ~-------~~~~~il~~l~~~~~~~~~~~~l~~~l~---------~~l~~k---~~LLVlDdv~~~~~~~~~~l~~~l~~ 302 (588)
+ .-.-+=++.+...... ....+...+. .+.+|+ .-++|+|.+++-.+.+.. ..+..
T Consensus 300 EeKm~PWmq~i~DnLE~L~~~~~~--~~~~l~~~l~~~~iev~alt~IRGRSl~~~FiIIDEaQNLTpheik---TiltR 374 (436)
T COG1875 300 EEKMGPWMQAIFDNLEVLFSPNEP--GDRALEEILSRGRIEVEALTYIRGRSLPDSFIIIDEAQNLTPHELK---TILTR 374 (436)
T ss_pred hhhccchHHHHHhHHHHHhccccc--chHHHHHHHhccceeeeeeeeecccccccceEEEehhhccCHHHHH---HHHHh
Confidence 1 1111112222222111 1111111111 133454 458999999886654444 44555
Q ss_pred CCCCcEEEEeecc
Q 007817 303 GARNSKIIVTTCH 315 (588)
Q Consensus 303 ~~~gs~ilvTTR~ 315 (588)
.+.||||+.|---
T Consensus 375 ~G~GsKIVl~gd~ 387 (436)
T COG1875 375 AGEGSKIVLTGDP 387 (436)
T ss_pred ccCCCEEEEcCCH
Confidence 6789999998843
No 242
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=96.29 E-value=0.0059 Score=61.78 Aligned_cols=29 Identities=21% Similarity=0.323 Sum_probs=25.7
Q ss_pred CCeEEEEEEccCCCcHHHHHHHHHccccc
Q 007817 194 ANFCVIPIVGMAGAGKTMLAREVYNDRAV 222 (588)
Q Consensus 194 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~~ 222 (588)
..+..++|||++|.|||.+|+.+++....
T Consensus 146 k~PlgllL~GPPGcGKTllAraiA~elg~ 174 (413)
T PLN00020 146 KVPLILGIWGGKGQGKSFQCELVFKKMGI 174 (413)
T ss_pred CCCeEEEeeCCCCCCHHHHHHHHHHHcCC
Confidence 46789999999999999999999997644
No 243
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=96.29 E-value=0.02 Score=52.81 Aligned_cols=102 Identities=14% Similarity=0.028 Sum_probs=56.5
Q ss_pred EEEEEEccCCCcHHHHHHHHHcccccccccccEEEEEE------eCCcccHHHHHHHHHHHhcCCCCCCCCHHHHHHHHH
Q 007817 197 CVIPIVGMAGAGKTMLAREVYNDRAVQNFKFDVKAWVS------VSDDFDVLRISRALLESITSTNCDFKTLNEVQVKLR 270 (588)
Q Consensus 197 ~vv~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~wv~------v~~~~~~~~~~~~il~~l~~~~~~~~~~~~l~~~l~ 270 (588)
.+++|+|+.|+|||||.+.+..-... ....+++. +.+... ....+...-.+.
T Consensus 26 e~~~l~G~nGsGKSTLl~~l~Gl~~p----~~G~i~~~g~~i~~~~q~~~------------------LSgGq~qrv~la 83 (177)
T cd03222 26 EVIGIVGPNGTGKTTAVKILAGQLIP----NGDNDEWDGITPVYKPQYID------------------LSGGELQRVAIA 83 (177)
T ss_pred CEEEEECCCCChHHHHHHHHHcCCCC----CCcEEEECCEEEEEEcccCC------------------CCHHHHHHHHHH
Confidence 59999999999999999999875432 12222221 111100 111222333556
Q ss_pred HHhcCCceeEEecccccc-ChhHHHHhhcccCCC--CCCcEEEEeecchhhhh
Q 007817 271 IIVDGKKFLLVLDDVWNE-NYNLWEILKAPFMAG--ARNSKIIVTTCHSNVAS 320 (588)
Q Consensus 271 ~~l~~k~~LLVlDdv~~~-~~~~~~~l~~~l~~~--~~gs~ilvTTR~~~v~~ 320 (588)
..+..++-++++|+--.. +......+...+... ..+..||++|.+.....
T Consensus 84 ral~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~ 136 (177)
T cd03222 84 AALLRNATFYLFDEPSAYLDIEQRLNAARAIRRLSEEGKKTALVVEHDLAVLD 136 (177)
T ss_pred HHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEECCHHHHH
Confidence 666777889999986321 222333333333221 12356788887765544
No 244
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=96.29 E-value=0.017 Score=54.25 Aligned_cols=80 Identities=19% Similarity=0.251 Sum_probs=45.1
Q ss_pred EEEEEccCCCcHHHHHHHHHccccccccccc---EEEEEEeCCcccHHHHHHHHHHHh----cCCCCCCCCHHHHHHHHH
Q 007817 198 VIPIVGMAGAGKTMLAREVYNDRAVQNFKFD---VKAWVSVSDDFDVLRISRALLESI----TSTNCDFKTLNEVQVKLR 270 (588)
Q Consensus 198 vv~I~G~gGiGKTtLA~~v~~~~~~~~~~f~---~~~wv~v~~~~~~~~~~~~il~~l----~~~~~~~~~~~~l~~~l~ 270 (588)
||+|.|++|+||||+|+.+.......+ .. ....++............. -... ....+..-+.+.+...|.
T Consensus 1 IIgI~G~sgSGKTTla~~L~~~L~~~~--~~~~~~~~~~~~d~~~~~~~~~~~-~~~~~~~~~~~~p~a~d~~~l~~~l~ 77 (194)
T PF00485_consen 1 IIGIAGPSGSGKTTLAKRLAQILNKRG--IPAMEMDIILSLDDFYDDYHLRDR-KGRGENRYNFDHPDAFDFDLLKEDLK 77 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHTTCT--TTCCCSEEEEEGGGGBHHHHHHHH-HHHCTTTSSTTSGGGBSHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHhCccC--cCccceeEEEeecccccccchhhH-hhccccccCCCCccccCHHHHHHHHH
Confidence 699999999999999999998776433 22 1233333222222222221 1111 111223456777777777
Q ss_pred HHhcCCceeE
Q 007817 271 IIVDGKKFLL 280 (588)
Q Consensus 271 ~~l~~k~~LL 280 (588)
...+++..-+
T Consensus 78 ~L~~g~~i~~ 87 (194)
T PF00485_consen 78 ALKNGGSIEI 87 (194)
T ss_dssp HHHTTSCEEE
T ss_pred HHhCCCcccc
Confidence 7666665433
No 245
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=96.28 E-value=0.029 Score=59.00 Aligned_cols=90 Identities=14% Similarity=0.088 Sum_probs=47.2
Q ss_pred CeEEEEEEccCCCcHHHHHHHHHcccccccccccEEEEEEeCCc-ccHHHHHHHHHHHhcCCCC---CCCCHHHHHHHHH
Q 007817 195 NFCVIPIVGMAGAGKTMLAREVYNDRAVQNFKFDVKAWVSVSDD-FDVLRISRALLESITSTNC---DFKTLNEVQVKLR 270 (588)
Q Consensus 195 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~wv~v~~~-~~~~~~~~~il~~l~~~~~---~~~~~~~l~~~l~ 270 (588)
.+.++.++|++|+||||.|..++.....+. .+ .+.-|++... +...+-+......++.+.. ...+..++.....
T Consensus 98 ~p~vi~~vG~~GsGKTTtaakLA~~l~~~~-g~-kV~lV~~D~~R~~a~~QL~~~a~~~gvp~~~~~~~~~P~~i~~~al 175 (428)
T TIGR00959 98 PPTVILMVGLQGSGKTTTCGKLAYYLKKKQ-GK-KVLLVACDLYRPAAIEQLKVLGQQVGVPVFALGKGQSPVEIARRAL 175 (428)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHHHHhC-CC-eEEEEeccccchHHHHHHHHHHHhcCCceEecCCCCCHHHHHHHHH
Confidence 468999999999999999988887643211 12 2333443321 1223334444454443221 1233434433333
Q ss_pred HHhcCCce-eEEecccc
Q 007817 271 IIVDGKKF-LLVLDDVW 286 (588)
Q Consensus 271 ~~l~~k~~-LLVlDdv~ 286 (588)
+.+..+.+ ++|+|-.-
T Consensus 176 ~~~~~~~~DvVIIDTaG 192 (428)
T TIGR00959 176 EYAKENGFDVVIVDTAG 192 (428)
T ss_pred HHHHhcCCCEEEEeCCC
Confidence 33333344 77777653
No 246
>COG0468 RecA RecA/RadA recombinase [DNA replication, recombination, and repair]
Probab=96.28 E-value=0.017 Score=56.85 Aligned_cols=89 Identities=21% Similarity=0.165 Sum_probs=57.1
Q ss_pred CCeEEEEEEccCCCcHHHHHHHHHcccccccccccEEEEEEeCCcccHHHHHHHHHHHhcCCC-CCCCCHHH---HHHHH
Q 007817 194 ANFCVIPIVGMAGAGKTMLAREVYNDRAVQNFKFDVKAWVSVSDDFDVLRISRALLESITSTN-CDFKTLNE---VQVKL 269 (588)
Q Consensus 194 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~il~~l~~~~-~~~~~~~~---l~~~l 269 (588)
+.-+++=|+|+.|+||||||.+++-..... -..++|++....+++..+..--...+..-. ....+.++ +...+
T Consensus 58 ~~g~ItEiyG~~gsGKT~lal~~~~~aq~~---g~~a~fIDtE~~l~p~r~~~l~~~~~d~l~v~~~~~~e~q~~i~~~~ 134 (279)
T COG0468 58 PRGRITEIYGPESSGKTTLALQLVANAQKP---GGKAAFIDTEHALDPERAKQLGVDLLDNLLVSQPDTGEQQLEIAEKL 134 (279)
T ss_pred ccceEEEEecCCCcchhhHHHHHHHHhhcC---CCeEEEEeCCCCCCHHHHHHHHHhhhcceeEecCCCHHHHHHHHHHH
Confidence 455799999999999999999988765543 347899999999888766433222121110 12233333 33334
Q ss_pred HHHhcCCceeEEeccc
Q 007817 270 RIIVDGKKFLLVLDDV 285 (588)
Q Consensus 270 ~~~l~~k~~LLVlDdv 285 (588)
......+--|+|+|.+
T Consensus 135 ~~~~~~~i~LvVVDSv 150 (279)
T COG0468 135 ARSGAEKIDLLVVDSV 150 (279)
T ss_pred HHhccCCCCEEEEecC
Confidence 4443444679999988
No 247
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=96.27 E-value=0.024 Score=56.49 Aligned_cols=82 Identities=12% Similarity=0.016 Sum_probs=42.4
Q ss_pred CCeEEEEEEccCCCcHHHHHHHHHcccccccccccEEEEEEeCCcccHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHh
Q 007817 194 ANFCVIPIVGMAGAGKTMLAREVYNDRAVQNFKFDVKAWVSVSDDFDVLRISRALLESITSTNCDFKTLNEVQVKLRIIV 273 (588)
Q Consensus 194 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~il~~l~~~~~~~~~~~~l~~~l~~~l 273 (588)
..+.+|+|.|..|+||||+|+.+..-..... .-..+..++...-......+...-..-....++.-+...+...+....
T Consensus 60 ~~p~IIGIaG~~GSGKSTlar~L~~ll~~~~-~~g~V~vi~~D~f~~~~~~l~~~g~~~~~g~P~s~D~~~l~~~L~~Lk 138 (290)
T TIGR00554 60 KIPYIISIAGSVAVGKSTTARILQALLSRWP-EHRKVELITTDGFLHPNQVLKERNLMKKKGFPESYDMHRLVKFLSDLK 138 (290)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHhhcC-CCCceEEEecccccccHHHHHHcCCccccCCChhccHHHHHHHHHHHH
Confidence 4568999999999999999987755332110 011233444433222222222210000011224456666666666665
Q ss_pred cCC
Q 007817 274 DGK 276 (588)
Q Consensus 274 ~~k 276 (588)
.|+
T Consensus 139 ~g~ 141 (290)
T TIGR00554 139 SGK 141 (290)
T ss_pred CCC
Confidence 554
No 248
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=96.27 E-value=0.028 Score=57.04 Aligned_cols=58 Identities=16% Similarity=0.221 Sum_probs=41.3
Q ss_pred CeEEEEEEccCCCcHHHHHHHHHccccccc---ccccEEEEEEeCCcccHHHHHHHHHHHhc
Q 007817 195 NFCVIPIVGMAGAGKTMLAREVYNDRAVQN---FKFDVKAWVSVSDDFDVLRISRALLESIT 253 (588)
Q Consensus 195 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~---~~f~~~~wv~v~~~~~~~~~~~~il~~l~ 253 (588)
.-.++-|+|++|+|||+|+.+++.+..... ..-..++||+....++..++. ++++.++
T Consensus 94 ~g~i~ei~G~~g~GKT~l~~~~~~~~~~~~~~g~~~~~~~yi~te~~f~~~rl~-~~~~~~g 154 (310)
T TIGR02236 94 TQAITEVFGEFGSGKTQICHQLAVNVQLPEEKGGLGGKAVYIDTENTFRPERIM-QMAEARG 154 (310)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhcCCcccCCCcceEEEEECCCCCCHHHHH-HHHHHcC
Confidence 457999999999999999999987643210 011378999999988877654 3444443
No 249
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=96.26 E-value=0.0043 Score=54.78 Aligned_cols=29 Identities=28% Similarity=0.295 Sum_probs=25.0
Q ss_pred eEEEEEEccCCCcHHHHHHHHHccccccc
Q 007817 196 FCVIPIVGMAGAGKTMLAREVYNDRAVQN 224 (588)
Q Consensus 196 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~~ 224 (588)
..-|+|.|++|+|||||++.+.+..+.++
T Consensus 5 ~mki~ITG~PGvGKtTl~~ki~e~L~~~g 33 (179)
T COG1618 5 AMKIFITGRPGVGKTTLVLKIAEKLREKG 33 (179)
T ss_pred ceEEEEeCCCCccHHHHHHHHHHHHHhcC
Confidence 35789999999999999999998776653
No 250
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=96.25 E-value=0.014 Score=54.11 Aligned_cols=23 Identities=22% Similarity=0.410 Sum_probs=20.5
Q ss_pred EEEEEccCCCcHHHHHHHHHccc
Q 007817 198 VIPIVGMAGAGKTMLAREVYNDR 220 (588)
Q Consensus 198 vv~I~G~gGiGKTtLA~~v~~~~ 220 (588)
+|.|+|++|+||||+|+.+....
T Consensus 1 ~i~i~G~pGsGKst~a~~la~~~ 23 (183)
T TIGR01359 1 VVFVLGGPGSGKGTQCAKIVENF 23 (183)
T ss_pred CEEEECCCCCCHHHHHHHHHHHc
Confidence 57899999999999999998843
No 251
>PRK07667 uridine kinase; Provisional
Probab=96.25 E-value=0.0063 Score=57.15 Aligned_cols=40 Identities=15% Similarity=0.337 Sum_probs=31.1
Q ss_pred HHHHHHHHhcCCCCCCCCeEEEEEEccCCCcHHHHHHHHHcccc
Q 007817 178 KARMLEMVLSDDPTTDANFCVIPIVGMAGAGKTMLAREVYNDRA 221 (588)
Q Consensus 178 ~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~ 221 (588)
.+.+.+.+.... +...+|+|.|.+|+||||+|+.+.....
T Consensus 3 ~~~~~~~~~~~~----~~~~iIgI~G~~gsGKStla~~L~~~l~ 42 (193)
T PRK07667 3 TNELINIMKKHK----ENRFILGIDGLSRSGKTTFVANLKENMK 42 (193)
T ss_pred HHHHHHHHHhcC----CCCEEEEEECCCCCCHHHHHHHHHHHHH
Confidence 455666665443 3558999999999999999999988654
No 252
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=96.24 E-value=0.22 Score=49.93 Aligned_cols=134 Identities=10% Similarity=0.087 Sum_probs=81.4
Q ss_pred CeEEEEEEccCCCcHHHHHHHHHccc--------ccccccccEEEEEEe-CCcccHHHHHHHHHHHhcCCCCCCCCHHHH
Q 007817 195 NFCVIPIVGMAGAGKTMLAREVYNDR--------AVQNFKFDVKAWVSV-SDDFDVLRISRALLESITSTNCDFKTLNEV 265 (588)
Q Consensus 195 ~~~vv~I~G~gGiGKTtLA~~v~~~~--------~~~~~~f~~~~wv~v-~~~~~~~~~~~~il~~l~~~~~~~~~~~~l 265 (588)
-..+..++|..|.||+++|..+.+.. .... +.+...++.. +....+.++. ++.+.+...+
T Consensus 17 l~haYLf~G~eg~gk~~~a~~~a~~l~c~~~~~~~~~~-~p~n~~~~d~~g~~i~vd~Ir-~l~~~~~~~~--------- 85 (299)
T PRK07132 17 ISHSFLLKSNYNEDIDEKILYFLNKFNNLQITNLNEQE-LPANIILFDIFDKDLSKSEFL-SAINKLYFSS--------- 85 (299)
T ss_pred CCeEEEEeCCCCCCHHHHHHHHHHHHcCcCCCCCCCCC-CCcceEEeccCCCcCCHHHHH-HHHHHhccCC---------
Confidence 34678899999999999998887764 1111 2222233321 1112222221 2222221110
Q ss_pred HHHHHHHhcCCceeEEeccccccChhHHHHhhcccCCCCCCcEEEEeecc-hhhhhh-ccccceeeCCCCCHHHHHHHHH
Q 007817 266 QVKLRIIVDGKKFLLVLDDVWNENYNLWEILKAPFMAGARNSKIIVTTCH-SNVASM-MGSVEHYNLKLLSDEYCWSVFV 343 (588)
Q Consensus 266 ~~~l~~~l~~k~~LLVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTTR~-~~v~~~-~~~~~~~~l~~L~~~ea~~Lf~ 343 (588)
.-.+.+=++|+|++...+....+.+...+.....++.+|++|.+ ..+... ......+++.++++++....+.
T Consensus 86 ------~~~~~~KvvII~~~e~m~~~a~NaLLK~LEEPp~~t~~il~~~~~~kll~TI~SRc~~~~f~~l~~~~l~~~l~ 159 (299)
T PRK07132 86 ------FVQSQKKILIIKNIEKTSNSLLNALLKTIEEPPKDTYFLLTTKNINKVLPTIVSRCQVFNVKEPDQQKILAKLL 159 (299)
T ss_pred ------cccCCceEEEEecccccCHHHHHHHHHHhhCCCCCeEEEEEeCChHhChHHHHhCeEEEECCCCCHHHHHHHHH
Confidence 00146778899999777777788888888776677777766644 333333 2346789999999999988776
Q ss_pred Hh
Q 007817 344 KH 345 (588)
Q Consensus 344 ~~ 345 (588)
..
T Consensus 160 ~~ 161 (299)
T PRK07132 160 SK 161 (299)
T ss_pred Hc
Confidence 54
No 253
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=96.24 E-value=0.02 Score=55.42 Aligned_cols=123 Identities=13% Similarity=0.057 Sum_probs=71.7
Q ss_pred EEEEEEccCCCcHHHHHHHHHcccccccccccEEEEEEeCC-----cccHHHHHHHHHHHhcCCCC------CCCCHHHH
Q 007817 197 CVIPIVGMAGAGKTMLAREVYNDRAVQNFKFDVKAWVSVSD-----DFDVLRISRALLESITSTNC------DFKTLNEV 265 (588)
Q Consensus 197 ~vv~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~wv~v~~-----~~~~~~~~~~il~~l~~~~~------~~~~~~~l 265 (588)
.+++|+|.+|.|||||++.+..-... -.+.+++.-.+ .....+-..++++.++.... ..-+..+.
T Consensus 40 e~~glVGESG~GKSTlgr~i~~L~~p----t~G~i~f~g~~i~~~~~~~~~~~v~elL~~Vgl~~~~~~ryPhelSGGQr 115 (268)
T COG4608 40 ETLGLVGESGCGKSTLGRLILGLEEP----TSGEILFEGKDITKLSKEERRERVLELLEKVGLPEEFLYRYPHELSGGQR 115 (268)
T ss_pred CEEEEEecCCCCHHHHHHHHHcCcCC----CCceEEEcCcchhhcchhHHHHHHHHHHHHhCCCHHHhhcCCcccCchhh
Confidence 58999999999999999999885542 12333333211 22233445666666664331 11222333
Q ss_pred HH-HHHHHhcCCceeEEeccccccC-hhHHHHhhcccCC--CCCCcEEEEeecchhhhhhcc
Q 007817 266 QV-KLRIIVDGKKFLLVLDDVWNEN-YNLWEILKAPFMA--GARNSKIIVTTCHSNVASMMG 323 (588)
Q Consensus 266 ~~-~l~~~l~~k~~LLVlDdv~~~~-~~~~~~l~~~l~~--~~~gs~ilvTTR~~~v~~~~~ 323 (588)
+. .+.+.|.-++-++|.|..-+.- ...-.++...+.. ...|-..|..|.+-.++..+.
T Consensus 116 QRi~IARALal~P~liV~DEpvSaLDvSiqaqIlnLL~dlq~~~~lt~lFIsHDL~vv~~is 177 (268)
T COG4608 116 QRIGIARALALNPKLIVADEPVSALDVSVQAQILNLLKDLQEELGLTYLFISHDLSVVRYIS 177 (268)
T ss_pred hhHHHHHHHhhCCcEEEecCchhhcchhHHHHHHHHHHHHHHHhCCeEEEEEEEHHhhhhhc
Confidence 33 5677788899999999863321 1111222222221 224667888888888877654
No 254
>PTZ00035 Rad51 protein; Provisional
Probab=96.23 E-value=0.043 Score=56.14 Aligned_cols=58 Identities=17% Similarity=0.157 Sum_probs=39.6
Q ss_pred CeEEEEEEccCCCcHHHHHHHHHccccc---ccccccEEEEEEeCCcccHHHHHHHHHHHhc
Q 007817 195 NFCVIPIVGMAGAGKTMLAREVYNDRAV---QNFKFDVKAWVSVSDDFDVLRISRALLESIT 253 (588)
Q Consensus 195 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~---~~~~f~~~~wv~v~~~~~~~~~~~~il~~l~ 253 (588)
.-.++.|+|++|+|||||+..++-.... .+..-..++|++....++..++ .++++.++
T Consensus 117 ~G~iteI~G~~GsGKT~l~~~l~~~~qlp~~~gg~~g~vvyIdtE~~f~~eri-~~ia~~~g 177 (337)
T PTZ00035 117 TGSITELFGEFRTGKTQLCHTLCVTCQLPIEQGGGEGKVLYIDTEGTFRPERI-VQIAERFG 177 (337)
T ss_pred CCeEEEEECCCCCchhHHHHHHHHHhccccccCCCCceEEEEEccCCCCHHHH-HHHHHHhC
Confidence 4579999999999999999988754331 1101235679998887777663 44455543
No 255
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=96.23 E-value=0.025 Score=54.74 Aligned_cols=29 Identities=28% Similarity=0.267 Sum_probs=25.4
Q ss_pred CCeEEEEEEccCCCcHHHHHHHHHccccc
Q 007817 194 ANFCVIPIVGMAGAGKTMLAREVYNDRAV 222 (588)
Q Consensus 194 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~~ 222 (588)
+...+++|.|+.|+|||||++.+......
T Consensus 31 ~~~~iigi~G~~GsGKTTl~~~L~~~l~~ 59 (229)
T PRK09270 31 QRRTIVGIAGPPGAGKSTLAEFLEALLQQ 59 (229)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhhh
Confidence 46789999999999999999999886654
No 256
>PRK05439 pantothenate kinase; Provisional
Probab=96.22 E-value=0.027 Score=56.54 Aligned_cols=82 Identities=13% Similarity=0.006 Sum_probs=44.5
Q ss_pred CCeEEEEEEccCCCcHHHHHHHHHcccccccccccEEEEEEeCCcccHHHHHHHHHHHhc-CCCCCCCCHHHHHHHHHHH
Q 007817 194 ANFCVIPIVGMAGAGKTMLAREVYNDRAVQNFKFDVKAWVSVSDDFDVLRISRALLESIT-STNCDFKTLNEVQVKLRII 272 (588)
Q Consensus 194 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~il~~l~-~~~~~~~~~~~l~~~l~~~ 272 (588)
+.+-+|+|.|.+|+||||+|+.+..-..... .-..+.-++..+-+...+.+..- ..+. ...++.-+.+.+...|...
T Consensus 84 ~~~~iIgIaG~~gsGKSTla~~L~~~l~~~~-~~~~v~vi~~DdFy~~~~~l~~~-~l~~~kg~Pes~D~~~l~~~L~~L 161 (311)
T PRK05439 84 KVPFIIGIAGSVAVGKSTTARLLQALLSRWP-EHPKVELVTTDGFLYPNAVLEER-GLMKRKGFPESYDMRALLRFLSDV 161 (311)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHhhC-CCCceEEEeccccccCHHHHhhh-hccccCCCcccccHHHHHHHHHHH
Confidence 4678999999999999999998877443211 11123334443332222222210 0010 1123345666666667666
Q ss_pred hcCCc
Q 007817 273 VDGKK 277 (588)
Q Consensus 273 l~~k~ 277 (588)
..|+.
T Consensus 162 k~G~~ 166 (311)
T PRK05439 162 KSGKP 166 (311)
T ss_pred HcCCC
Confidence 66654
No 257
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.22 E-value=0.026 Score=58.60 Aligned_cols=26 Identities=27% Similarity=0.280 Sum_probs=22.6
Q ss_pred CeEEEEEEccCCCcHHHHHHHHHccc
Q 007817 195 NFCVIPIVGMAGAGKTMLAREVYNDR 220 (588)
Q Consensus 195 ~~~vv~I~G~gGiGKTtLA~~v~~~~ 220 (588)
...+++|+|++|+||||++..++...
T Consensus 222 ~~~vi~lvGptGvGKTTtaaKLA~~~ 247 (432)
T PRK12724 222 QRKVVFFVGPTGSGKTTSIAKLAAKY 247 (432)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 34789999999999999999998754
No 258
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=96.21 E-value=0.072 Score=52.60 Aligned_cols=127 Identities=13% Similarity=0.126 Sum_probs=66.6
Q ss_pred hHHHHHHHHhcCCCCCCCCeEEEEEEccCCCcHHHHHHHHHcccccccccccEEEEEEeCCcccHHHHHHHHHHHhcCCC
Q 007817 177 DKARMLEMVLSDDPTTDANFCVIPIVGMAGAGKTMLAREVYNDRAVQNFKFDVKAWVSVSDDFDVLRISRALLESITSTN 256 (588)
Q Consensus 177 e~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~il~~l~~~~ 256 (588)
..+.++..|... +....++|+|+.|.|||||.+.+...... ....+++.-.+ ....+-..++......-.
T Consensus 97 ~~~~~l~~l~~~-----~~~~~~~i~g~~g~GKttl~~~l~~~~~~----~~G~i~~~g~~-v~~~d~~~ei~~~~~~~~ 166 (270)
T TIGR02858 97 AADKLLPYLVRN-----NRVLNTLIISPPQCGKTTLLRDLARILST----GISQLGLRGKK-VGIVDERSEIAGCVNGVP 166 (270)
T ss_pred cHHHHHHHHHhC-----CCeeEEEEEcCCCCCHHHHHHHHhCccCC----CCceEEECCEE-eecchhHHHHHHHhcccc
Confidence 344555555532 24578999999999999999999986542 22333332110 000011123322222111
Q ss_pred C-C-------CCCHHHHHHHHHHHh-cCCceeEEeccccccChhHHHHhhcccCCCCCCcEEEEeecchhhh
Q 007817 257 C-D-------FKTLNEVQVKLRIIV-DGKKFLLVLDDVWNENYNLWEILKAPFMAGARNSKIIVTTCHSNVA 319 (588)
Q Consensus 257 ~-~-------~~~~~~l~~~l~~~l-~~k~~LLVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTTR~~~v~ 319 (588)
+ . .++... ...+...+ ...+=++++|.+-. ...+..+...+. .|..+|+||.+..+.
T Consensus 167 q~~~~~r~~v~~~~~k-~~~~~~~i~~~~P~villDE~~~--~e~~~~l~~~~~---~G~~vI~ttH~~~~~ 232 (270)
T TIGR02858 167 QHDVGIRTDVLDGCPK-AEGMMMLIRSMSPDVIVVDEIGR--EEDVEALLEALH---AGVSIIATAHGRDVE 232 (270)
T ss_pred cccccccccccccchH-HHHHHHHHHhCCCCEEEEeCCCc--HHHHHHHHHHHh---CCCEEEEEechhHHH
Confidence 1 0 011111 11222222 35788999999843 344555544442 477899999876553
No 259
>KOG2035 consensus Replication factor C, subunit RFC3 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=96.20 E-value=0.025 Score=54.44 Aligned_cols=200 Identities=15% Similarity=0.148 Sum_probs=106.3
Q ss_pred eeechhhHHHHHHHHhcCCCCCCCCeEEEEEEccCCCcHHHHHHHHHcccccc---cccccEEEEEEeCCc-ccHHHHHH
Q 007817 171 VYGRDEDKARMLEMVLSDDPTTDANFCVIPIVGMAGAGKTMLAREVYNDRAVQ---NFKFDVKAWVSVSDD-FDVLRISR 246 (588)
Q Consensus 171 ~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~---~~~f~~~~wv~v~~~-~~~~~~~~ 246 (588)
+.++++....+...... +..+-+.++|+.|.||-|.+..+.++.-.- ...-+..-|.+-++. ..+..+-.
T Consensus 15 l~~~~e~~~~Lksl~~~------~d~PHll~yGPSGaGKKTrimclL~elYG~gveklki~~~t~~tpS~kklEistvsS 88 (351)
T KOG2035|consen 15 LIYHEELANLLKSLSST------GDFPHLLVYGPSGAGKKTRIMCLLRELYGVGVEKLKIETRTFTTPSKKKLEISTVSS 88 (351)
T ss_pred cccHHHHHHHHHHhccc------CCCCeEEEECCCCCCchhhHHHHHHHHhCCCchheeeeeEEEecCCCceEEEEEecc
Confidence 56677777777666542 356788999999999999887776654221 112344555544433 10000000
Q ss_pred HHHHHhcCCCCCCCCHHHHHHHHHHHhc--------CCce-eEEeccccccChhHHHHhhcccCCCCCCcEEEEeecchh
Q 007817 247 ALLESITSTNCDFKTLNEVQVKLRIIVD--------GKKF-LLVLDDVWNENYNLWEILKAPFMAGARNSKIIVTTCHSN 317 (588)
Q Consensus 247 ~il~~l~~~~~~~~~~~~l~~~l~~~l~--------~k~~-LLVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTTR~~~ 317 (588)
.---++++...+..|---.++.+++.-+ .+.| ++|+-.+.+-..+.-..+++....-...+|+|+...+..
T Consensus 89 ~yHlEitPSDaG~~DRvViQellKevAQt~qie~~~qr~fKvvvi~ead~LT~dAQ~aLRRTMEkYs~~~RlIl~cns~S 168 (351)
T KOG2035|consen 89 NYHLEITPSDAGNYDRVVIQELLKEVAQTQQIETQGQRPFKVVVINEADELTRDAQHALRRTMEKYSSNCRLILVCNSTS 168 (351)
T ss_pred cceEEeChhhcCcccHHHHHHHHHHHHhhcchhhccccceEEEEEechHhhhHHHHHHHHHHHHHHhcCceEEEEecCcc
Confidence 0000011111112222222333333221 2344 566666655444555556666655556778776553321
Q ss_pred -hhhhc-cccceeeCCCCCHHHHHHHHHHhhcCCCCCCCChhHHHHHHHHHHHhCCCchHHHHhh
Q 007817 318 -VASMM-GSVEHYNLKLLSDEYCWSVFVKHAFERRDAGAHQFSKLFRKKIVAKCGGLPLAVSTLG 380 (588)
Q Consensus 318 -v~~~~-~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~i~~~I~~~c~GlPLai~~~~ 380 (588)
+...+ ...-.+++...+++|....++...-..+- ..-.+++.+|+++++|+---...+-
T Consensus 169 riIepIrSRCl~iRvpaps~eeI~~vl~~v~~kE~l----~lp~~~l~rIa~kS~~nLRrAllml 229 (351)
T KOG2035|consen 169 RIIEPIRSRCLFIRVPAPSDEEITSVLSKVLKKEGL----QLPKELLKRIAEKSNRNLRRALLML 229 (351)
T ss_pred cchhHHhhheeEEeCCCCCHHHHHHHHHHHHHHhcc----cCcHHHHHHHHHHhcccHHHHHHHH
Confidence 11111 12245889999999999999887633222 1125678899999998754433333
No 260
>PTZ00301 uridine kinase; Provisional
Probab=96.18 E-value=0.0096 Score=56.50 Aligned_cols=25 Identities=32% Similarity=0.551 Sum_probs=22.1
Q ss_pred eEEEEEEccCCCcHHHHHHHHHccc
Q 007817 196 FCVIPIVGMAGAGKTMLAREVYNDR 220 (588)
Q Consensus 196 ~~vv~I~G~gGiGKTtLA~~v~~~~ 220 (588)
..+|+|.|.+|+||||||+.+.+..
T Consensus 3 ~~iIgIaG~SgSGKTTla~~l~~~l 27 (210)
T PTZ00301 3 CTVIGISGASGSGKSSLSTNIVSEL 27 (210)
T ss_pred CEEEEEECCCcCCHHHHHHHHHHHH
Confidence 4799999999999999999887654
No 261
>PTZ00088 adenylate kinase 1; Provisional
Probab=96.17 E-value=0.0042 Score=59.79 Aligned_cols=23 Identities=26% Similarity=0.408 Sum_probs=20.7
Q ss_pred EEEEEccCCCcHHHHHHHHHccc
Q 007817 198 VIPIVGMAGAGKTMLAREVYNDR 220 (588)
Q Consensus 198 vv~I~G~gGiGKTtLA~~v~~~~ 220 (588)
-|.|+|++|+||||+|+.+.+..
T Consensus 8 rIvl~G~PGsGK~T~a~~La~~~ 30 (229)
T PTZ00088 8 KIVLFGAPGVGKGTFAEILSKKE 30 (229)
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 48899999999999999998854
No 262
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=96.16 E-value=0.0037 Score=54.09 Aligned_cols=22 Identities=41% Similarity=0.662 Sum_probs=20.0
Q ss_pred EEEEccCCCcHHHHHHHHHccc
Q 007817 199 IPIVGMAGAGKTMLAREVYNDR 220 (588)
Q Consensus 199 v~I~G~gGiGKTtLA~~v~~~~ 220 (588)
|+|.|.+|+||||+|+.+.+..
T Consensus 1 I~i~G~~GsGKtTia~~L~~~~ 22 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAERL 22 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 6899999999999999998863
No 263
>PHA02244 ATPase-like protein
Probab=96.15 E-value=0.045 Score=55.86 Aligned_cols=36 Identities=22% Similarity=0.371 Sum_probs=26.5
Q ss_pred hHHHHHHHHhcCCCCCCCCeEEEEEEccCCCcHHHHHHHHHccc
Q 007817 177 DKARMLEMVLSDDPTTDANFCVIPIVGMAGAGKTMLAREVYNDR 220 (588)
Q Consensus 177 e~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~ 220 (588)
....+..++... .-|.|+|++|+|||+||+.+++..
T Consensus 108 ~~~ri~r~l~~~--------~PVLL~GppGtGKTtLA~aLA~~l 143 (383)
T PHA02244 108 ETADIAKIVNAN--------IPVFLKGGAGSGKNHIAEQIAEAL 143 (383)
T ss_pred HHHHHHHHHhcC--------CCEEEECCCCCCHHHHHHHHHHHh
Confidence 344555555433 246789999999999999999863
No 264
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=96.14 E-value=0.027 Score=51.77 Aligned_cols=116 Identities=18% Similarity=0.204 Sum_probs=58.8
Q ss_pred EEEEEEccCCCcHHHHHHHHHcccccccccccEEEEEEeCC--cccHHHHHHHHHHHhcC--CCCC----------CCCH
Q 007817 197 CVIPIVGMAGAGKTMLAREVYNDRAVQNFKFDVKAWVSVSD--DFDVLRISRALLESITS--TNCD----------FKTL 262 (588)
Q Consensus 197 ~vv~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~wv~v~~--~~~~~~~~~~il~~l~~--~~~~----------~~~~ 262 (588)
.+++|+|+.|.|||||.+.++..... ....+++.-.+ ..+..... ..+.. +... ....
T Consensus 29 e~~~i~G~nGsGKStLl~~l~G~~~~----~~G~i~~~g~~~~~~~~~~~~----~~i~~~~q~~~~~~~tv~~~lLS~G 100 (173)
T cd03246 29 ESLAIIGPSGSGKSTLARLILGLLRP----TSGRVRLDGADISQWDPNELG----DHVGYLPQDDELFSGSIAENILSGG 100 (173)
T ss_pred CEEEEECCCCCCHHHHHHHHHhccCC----CCCeEEECCEEcccCCHHHHH----hheEEECCCCccccCcHHHHCcCHH
Confidence 58999999999999999999875432 22333322110 01111111 11111 0000 0111
Q ss_pred HHHHHHHHHHhcCCceeEEeccccc-cChhHHHHhhcccCC-CCCCcEEEEeecchhhhh
Q 007817 263 NEVQVKLRIIVDGKKFLLVLDDVWN-ENYNLWEILKAPFMA-GARNSKIIVTTCHSNVAS 320 (588)
Q Consensus 263 ~~l~~~l~~~l~~k~~LLVlDdv~~-~~~~~~~~l~~~l~~-~~~gs~ilvTTR~~~v~~ 320 (588)
+...-.+...+-.++=++++|+... -+......+...+.. ...|..||++|.+.....
T Consensus 101 ~~qrv~la~al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~ 160 (173)
T cd03246 101 QRQRLGLARALYGNPRILVLDEPNSHLDVEGERALNQAIAALKAAGATRIVIAHRPETLA 160 (173)
T ss_pred HHHHHHHHHHHhcCCCEEEEECCccccCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHH
Confidence 2222345555667778999998632 122223333333222 123667888888776654
No 265
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=96.14 E-value=0.023 Score=61.85 Aligned_cols=136 Identities=14% Similarity=0.138 Sum_probs=76.4
Q ss_pred CCceeechhhHHHHHHHHhcCCCCCCCCeEEEEEEccCCCcHHHHHHHHHcccccccccccEEEEEEeCCcccHHHHHHH
Q 007817 168 ERAVYGRDEDKARMLEMVLSDDPTTDANFCVIPIVGMAGAGKTMLAREVYNDRAVQNFKFDVKAWVSVSDDFDVLRISRA 247 (588)
Q Consensus 168 ~~~~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~ 247 (588)
...++|+...+.++.+.+..-.. ...-|.|+|..|+|||++|+.+.+.....+ ...+.|++..-.+ ..+...
T Consensus 186 ~~~iig~s~~~~~~~~~i~~~a~----~~~pVlI~Ge~GtGK~~~A~~ih~~s~r~~---~p~v~v~c~~~~~-~~~e~~ 257 (509)
T PRK05022 186 EGEMIGQSPAMQQLKKEIEVVAA----SDLNVLILGETGVGKELVARAIHAASPRAD---KPLVYLNCAALPE-SLAESE 257 (509)
T ss_pred CCceeecCHHHHHHHHHHHHHhC----CCCcEEEECCCCccHHHHHHHHHHhCCcCC---CCeEEEEcccCCh-HHHHHH
Confidence 45689999999888888876432 335788999999999999999988543222 2334455554322 111112
Q ss_pred HHHHhcCCCCCCCCHHHHHHHHHHHhcCCceeEEeccccccChhHHHHhhcccCCCC-----------CCcEEEEeecch
Q 007817 248 LLESITSTNCDFKTLNEVQVKLRIIVDGKKFLLVLDDVWNENYNLWEILKAPFMAGA-----------RNSKIIVTTCHS 316 (588)
Q Consensus 248 il~~l~~~~~~~~~~~~l~~~l~~~l~~k~~LLVlDdv~~~~~~~~~~l~~~l~~~~-----------~gs~ilvTTR~~ 316 (588)
+.....+...+... .....+. ....=.|+||++..........+...+..+. ...+||.||...
T Consensus 258 lfG~~~g~~~ga~~--~~~g~~~---~a~gGtL~ldeI~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiI~~t~~~ 332 (509)
T PRK05022 258 LFGHVKGAFTGAIS--NRSGKFE---LADGGTLFLDEIGELPLALQAKLLRVLQYGEIQRVGSDRSLRVDVRVIAATNRD 332 (509)
T ss_pred hcCccccccCCCcc--cCCcchh---hcCCCEEEecChhhCCHHHHHHHHHHHhcCCEeeCCCCcceecceEEEEecCCC
Confidence 21111110000000 0000011 1223347899998777666667766554321 245888888543
No 266
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=96.13 E-value=0.059 Score=60.33 Aligned_cols=130 Identities=17% Similarity=0.157 Sum_probs=71.2
Q ss_pred EEEEEEccCCCcHHHHHHHHHcccccccccccEEEEEEeCCcccHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhcCC
Q 007817 197 CVIPIVGMAGAGKTMLAREVYNDRAVQNFKFDVKAWVSVSDDFDVLRISRALLESITSTNCDFKTLNEVQVKLRIIVDGK 276 (588)
Q Consensus 197 ~vv~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~il~~l~~~~~~~~~~~~l~~~l~~~l~~k 276 (588)
+-+.|+|++|+|||++|+.+++.... .| +.++.++ +. ....+ .....+...+.......
T Consensus 186 ~gill~G~~G~GKt~~~~~~a~~~~~---~f---~~is~~~------~~----~~~~g-----~~~~~~~~~f~~a~~~~ 244 (644)
T PRK10733 186 KGVLMVGPPGTGKTLLAKAIAGEAKV---PF---FTISGSD------FV----EMFVG-----VGASRVRDMFEQAKKAA 244 (644)
T ss_pred CcEEEECCCCCCHHHHHHHHHHHcCC---CE---EEEehHH------hH----Hhhhc-----ccHHHHHHHHHHHHhcC
Confidence 44899999999999999999885533 22 1222221 11 11100 11122333333334457
Q ss_pred ceeEEeccccccC----------hhHH----HHhhcccCC--CCCCcEEEEeecchhhhhh-c----cccceeeCCCCCH
Q 007817 277 KFLLVLDDVWNEN----------YNLW----EILKAPFMA--GARNSKIIVTTCHSNVASM-M----GSVEHYNLKLLSD 335 (588)
Q Consensus 277 ~~LLVlDdv~~~~----------~~~~----~~l~~~l~~--~~~gs~ilvTTR~~~v~~~-~----~~~~~~~l~~L~~ 335 (588)
+++|+||+++.-. ...+ ..+...+.. ...+.-+|.||..++.... + .-...+.+...+.
T Consensus 245 P~IifIDEiD~l~~~r~~~~~g~~~~~~~~ln~lL~~mdg~~~~~~vivIaaTN~p~~lD~Al~RpgRfdr~i~v~~Pd~ 324 (644)
T PRK10733 245 PCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDV 324 (644)
T ss_pred CcEEEehhHhhhhhccCCCCCCCchHHHHHHHHHHHhhhcccCCCCeeEEEecCChhhcCHHHhCCcccceEEEcCCCCH
Confidence 8999999985421 0112 222222221 1234556667766654332 1 1245788888888
Q ss_pred HHHHHHHHHhhc
Q 007817 336 EYCWSVFVKHAF 347 (588)
Q Consensus 336 ~ea~~Lf~~~a~ 347 (588)
++-.+++..+..
T Consensus 325 ~~R~~Il~~~~~ 336 (644)
T PRK10733 325 RGREQILKVHMR 336 (644)
T ss_pred HHHHHHHHHHhh
Confidence 888888887763
No 267
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.13 E-value=0.019 Score=52.78 Aligned_cols=117 Identities=15% Similarity=0.026 Sum_probs=60.3
Q ss_pred EEEEEEccCCCcHHHHHHHHHcccccccccccEEEEEEeCCcccHHHHHHHHHHHhcC--CCC---C---------CCCH
Q 007817 197 CVIPIVGMAGAGKTMLAREVYNDRAVQNFKFDVKAWVSVSDDFDVLRISRALLESITS--TNC---D---------FKTL 262 (588)
Q Consensus 197 ~vv~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~il~~l~~--~~~---~---------~~~~ 262 (588)
.+++|+|+.|.|||||.+.++..... ....+++.-....+.. ..+-..+.. +.. . ....
T Consensus 27 e~~~i~G~nGsGKStLl~~l~G~~~~----~~G~i~~~g~~~~~~~---~~~~~~i~~~~q~~~~~~~~tv~~~~~LS~G 99 (173)
T cd03230 27 EIYGLLGPNGAGKTTLIKIILGLLKP----DSGEIKVLGKDIKKEP---EEVKRRIGYLPEEPSLYENLTVRENLKLSGG 99 (173)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCC----CCeEEEECCEEcccch---HhhhccEEEEecCCccccCCcHHHHhhcCHH
Confidence 58999999999999999999875432 2333433211000000 011111110 000 0 0111
Q ss_pred HHHHHHHHHHhcCCceeEEeccccc-cChhHHHHhhcccCCC-CCCcEEEEeecchhhhh
Q 007817 263 NEVQVKLRIIVDGKKFLLVLDDVWN-ENYNLWEILKAPFMAG-ARNSKIIVTTCHSNVAS 320 (588)
Q Consensus 263 ~~l~~~l~~~l~~k~~LLVlDdv~~-~~~~~~~~l~~~l~~~-~~gs~ilvTTR~~~v~~ 320 (588)
+...-.+...+..++=++++|+.-. -+......+...+... ..|..||++|.+.....
T Consensus 100 ~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~th~~~~~~ 159 (173)
T cd03230 100 MKQRLALAQALLHDPELLILDEPTSGLDPESRREFWELLRELKKEGKTILLSSHILEEAE 159 (173)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHH
Confidence 2222346666778889999998632 1222333333333221 23677888888876554
No 268
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=96.13 E-value=0.12 Score=57.27 Aligned_cols=183 Identities=14% Similarity=0.175 Sum_probs=104.1
Q ss_pred Cceeechh---hHHHHHHHHhcCCC---CCCCCeEEEEEEccCCCcHHHHHHHHHcccccccccccEEEEEEeCCcccHH
Q 007817 169 RAVYGRDE---DKARMLEMVLSDDP---TTDANFCVIPIVGMAGAGKTMLAREVYNDRAVQNFKFDVKAWVSVSDDFDVL 242 (588)
Q Consensus 169 ~~~vGR~~---e~~~l~~~L~~~~~---~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~wv~v~~~~~~~ 242 (588)
.++.|-++ |+.++++.|..+.. -+..-++=+.++|++|.|||-||++++-...+ . |++++..
T Consensus 311 kDVAG~deAK~El~E~V~fLKNP~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGEAgV---P-----F~svSGS---- 378 (774)
T KOG0731|consen 311 KDVAGVDEAKEELMEFVKFLKNPEQYQELGAKIPKGVLLVGPPGTGKTLLAKAIAGEAGV---P-----FFSVSGS---- 378 (774)
T ss_pred ccccCcHHHHHHHHHHHHHhcCHHHHHHcCCcCcCceEEECCCCCcHHHHHHHHhcccCC---c-----eeeechH----
Confidence 35677664 66777777766542 12344677889999999999999999987655 2 2444432
Q ss_pred HHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhcCCceeEEecccccc---------------ChhHHHHhhcccCCCC--C
Q 007817 243 RISRALLESITSTNCDFKTLNEVQVKLRIIVDGKKFLLVLDDVWNE---------------NYNLWEILKAPFMAGA--R 305 (588)
Q Consensus 243 ~~~~~il~~l~~~~~~~~~~~~l~~~l~~~l~~k~~LLVlDdv~~~---------------~~~~~~~l~~~l~~~~--~ 305 (588)
+.++.+.+.. .....++ ....=...++++.+|++... ....++++..-+.... .
T Consensus 379 ----EFvE~~~g~~--asrvr~l---f~~ar~~aP~iifideida~~~~r~G~~~~~~~~e~e~tlnQll~emDgf~~~~ 449 (774)
T KOG0731|consen 379 ----EFVEMFVGVG--ASRVRDL---FPLARKNAPSIIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLLVEMDGFETSK 449 (774)
T ss_pred ----HHHHHhcccc--hHHHHHH---HHHhhccCCeEEEecccccccccccccccCCCChHHHHHHHHHHHHhcCCcCCC
Confidence 2222222211 1111221 12222356888888877421 1234455544444322 2
Q ss_pred CcEEEEeecchhhhhh--cc---ccceeeCCCCCHHHHHHHHHHhhcCCCCCCCChhHHHHHHHHHHHhCCCchHH
Q 007817 306 NSKIIVTTCHSNVASM--MG---SVEHYNLKLLSDEYCWSVFVKHAFERRDAGAHQFSKLFRKKIVAKCGGLPLAV 376 (588)
Q Consensus 306 gs~ilvTTR~~~v~~~--~~---~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~i~~~I~~~c~GlPLai 376 (588)
+.-+|-+|...++... +. -+..+.++.-+.....++|.-|+-.... ..+...+++ |+...-|.+=|.
T Consensus 450 ~vi~~a~tnr~d~ld~allrpGRfdr~i~i~~p~~~~r~~i~~~h~~~~~~---~~e~~dl~~-~a~~t~gf~gad 521 (774)
T KOG0731|consen 450 GVIVLAATNRPDILDPALLRPGRFDRQIQIDLPDVKGRASILKVHLRKKKL---DDEDVDLSK-LASLTPGFSGAD 521 (774)
T ss_pred cEEEEeccCCccccCHHhcCCCccccceeccCCchhhhHHHHHHHhhccCC---CcchhhHHH-HHhcCCCCcHHH
Confidence 3334445555544332 11 3467888888888999999988743322 234445555 777777777553
No 269
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=96.13 E-value=0.011 Score=56.93 Aligned_cols=65 Identities=22% Similarity=0.205 Sum_probs=41.1
Q ss_pred hHHHHHHHHhcCCCCCCCCeEEEEEEccCCCcHHHHHHHHHcccccccccccEEEEEEeCCcccHHHHHH
Q 007817 177 DKARMLEMVLSDDPTTDANFCVIPIVGMAGAGKTMLAREVYNDRAVQNFKFDVKAWVSVSDDFDVLRISR 246 (588)
Q Consensus 177 e~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~ 246 (588)
+..++++.+.... ++..+|+|.|+||+|||||...+....+.++ +--.++=|+-|.+++--.++.
T Consensus 14 ~~~~ll~~l~~~~----g~a~~iGiTG~PGaGKSTli~~l~~~~~~~g-~~VaVlAVDPSSp~tGGAlLG 78 (266)
T PF03308_consen 14 EARELLKRLYPHT----GRAHVIGITGPPGAGKSTLIDALIRELRERG-KRVAVLAVDPSSPFTGGALLG 78 (266)
T ss_dssp HHHHHHHHHGGGT----T-SEEEEEEE-TTSSHHHHHHHHHHHHHHTT---EEEEEE-GGGGCC---SS-
T ss_pred HHHHHHHHHHhhc----CCceEEEeeCCCCCcHHHHHHHHHHHHhhcC-CceEEEEECCCCCCCCCcccc
Confidence 4556666665432 3568999999999999999999988877655 444566666676666544443
No 270
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=96.12 E-value=0.014 Score=53.28 Aligned_cols=79 Identities=14% Similarity=0.161 Sum_probs=43.0
Q ss_pred EEEEccCCCcHHHHHHHHHcccccccccccEEEEEEeCCcccHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhcC--C
Q 007817 199 IPIVGMAGAGKTMLAREVYNDRAVQNFKFDVKAWVSVSDDFDVLRISRALLESITSTNCDFKTLNEVQVKLRIIVDG--K 276 (588)
Q Consensus 199 v~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~il~~l~~~~~~~~~~~~l~~~l~~~l~~--k 276 (588)
+.|.|.+|+|||++|.++... ....++++.-...++.. +...|.......+.. ....+....+.+.+.. +
T Consensus 2 ~li~G~~~sGKS~~a~~~~~~------~~~~~~y~at~~~~d~e-m~~rI~~H~~~R~~~-w~t~E~~~~l~~~l~~~~~ 73 (169)
T cd00544 2 ILVTGGARSGKSRFAERLAAE------LGGPVTYIATAEAFDDE-MAERIARHRKRRPAH-WRTIETPRDLVSALKELDP 73 (169)
T ss_pred EEEECCCCCCHHHHHHHHHHh------cCCCeEEEEccCcCCHH-HHHHHHHHHHhCCCC-ceEeecHHHHHHHHHhcCC
Confidence 679999999999999999764 12345666666665542 333333322222211 1111222233333321 3
Q ss_pred ceeEEeccc
Q 007817 277 KFLLVLDDV 285 (588)
Q Consensus 277 ~~LLVlDdv 285 (588)
.-.+++|.+
T Consensus 74 ~~~VLIDcl 82 (169)
T cd00544 74 GDVVLIDCL 82 (169)
T ss_pred CCEEEEEcH
Confidence 447999986
No 271
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=96.11 E-value=0.0084 Score=56.55 Aligned_cols=111 Identities=8% Similarity=0.100 Sum_probs=58.0
Q ss_pred EEEEEEccCCCcHHHHHHHHHcccccccccccEEEEEEeCCcccHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhcCC
Q 007817 197 CVIPIVGMAGAGKTMLAREVYNDRAVQNFKFDVKAWVSVSDDFDVLRISRALLESITSTNCDFKTLNEVQVKLRIIVDGK 276 (588)
Q Consensus 197 ~vv~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~il~~l~~~~~~~~~~~~l~~~l~~~l~~k 276 (588)
.++.|+|+.|+||||++..+...... .....++. +.++... ..... ..+-....-..+.......++..+...
T Consensus 2 GlilI~GptGSGKTTll~~ll~~~~~---~~~~~i~t-~e~~~E~--~~~~~-~~~i~q~~vg~~~~~~~~~i~~aLr~~ 74 (198)
T cd01131 2 GLVLVTGPTGSGKSTTLAAMIDYINK---NKTHHILT-IEDPIEF--VHESK-RSLINQREVGLDTLSFENALKAALRQD 74 (198)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhhh---cCCcEEEE-EcCCccc--cccCc-cceeeecccCCCccCHHHHHHHHhcCC
Confidence 47899999999999999988775432 22233332 2222110 00000 000000000111223455677777777
Q ss_pred ceeEEeccccccChhHHHHhhcccCCCCCCcEEEEeecchhhh
Q 007817 277 KFLLVLDDVWNENYNLWEILKAPFMAGARNSKIIVTTCHSNVA 319 (588)
Q Consensus 277 ~~LLVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTTR~~~v~ 319 (588)
+=++++|++.+ .+....+.... ..|..++.|+...++.
T Consensus 75 pd~ii~gEird--~e~~~~~l~~a---~~G~~v~~t~Ha~~~~ 112 (198)
T cd01131 75 PDVILVGEMRD--LETIRLALTAA---ETGHLVMSTLHTNSAA 112 (198)
T ss_pred cCEEEEcCCCC--HHHHHHHHHHH---HcCCEEEEEecCCcHH
Confidence 88999999953 33333332222 2355677777655544
No 272
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=96.09 E-value=0.04 Score=62.31 Aligned_cols=120 Identities=15% Similarity=0.159 Sum_probs=73.3
Q ss_pred ceeechhhHHHHHHHHhcCCCCCC--CCeEEEEEEccCCCcHHHHHHHHHcccccccccccEEEEEEeCCcccHHHHHHH
Q 007817 170 AVYGRDEDKARMLEMVLSDDPTTD--ANFCVIPIVGMAGAGKTMLAREVYNDRAVQNFKFDVKAWVSVSDDFDVLRISRA 247 (588)
Q Consensus 170 ~~vGR~~e~~~l~~~L~~~~~~~~--~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~ 247 (588)
.++|-++.+..|.+.+.....+.. .....+.+.|+.|+|||-||+.+....-. ..+..+-++.+.- ..
T Consensus 563 ~V~gQ~eAv~aIa~AI~~sr~gl~~~~~~awflflGpdgvGKt~lAkaLA~~~Fg---se~~~IriDmse~------~e- 632 (898)
T KOG1051|consen 563 RVIGQDEAVAAIAAAIRRSRAGLKDPNPDAWFLFLGPDGVGKTELAKALAEYVFG---SEENFIRLDMSEF------QE- 632 (898)
T ss_pred hccchHHHHHHHHHHHHhhhcccCCCCCCeEEEEECCCchhHHHHHHHHHHHHcC---CccceEEechhhh------hh-
Confidence 467777777888887766543222 25678889999999999999998875422 2334444444432 12
Q ss_pred HHHHhcCCCCCCCCHHHHHHHHHHHhcCCce-eEEeccccccChhHHHHhhcccC
Q 007817 248 LLESITSTNCDFKTLNEVQVKLRIIVDGKKF-LLVLDDVWNENYNLWEILKAPFM 301 (588)
Q Consensus 248 il~~l~~~~~~~~~~~~l~~~l~~~l~~k~~-LLVlDdv~~~~~~~~~~l~~~l~ 301 (588)
...+.+.++... ..+....|.+.++.++| +|+||||...+......+...+.
T Consensus 633 -vskligsp~gyv-G~e~gg~LteavrrrP~sVVLfdeIEkAh~~v~n~llq~lD 685 (898)
T KOG1051|consen 633 -VSKLIGSPPGYV-GKEEGGQLTEAVKRRPYSVVLFEEIEKAHPDVLNILLQLLD 685 (898)
T ss_pred -hhhccCCCcccc-cchhHHHHHHHHhcCCceEEEEechhhcCHHHHHHHHHHHh
Confidence 233322222111 11223367777778887 66689998877777665555543
No 273
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=96.08 E-value=0.063 Score=53.30 Aligned_cols=52 Identities=29% Similarity=0.274 Sum_probs=36.9
Q ss_pred EEEEEEccCCCcHHHHHHHHHcccccccccccEEEEEEeCCcccHHHHHHHHHHHh
Q 007817 197 CVIPIVGMAGAGKTMLAREVYNDRAVQNFKFDVKAWVSVSDDFDVLRISRALLESI 252 (588)
Q Consensus 197 ~vv~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~il~~l 252 (588)
.++.|.|.+|+||||++.+++...... +-..++|+++..+ ..++...+...+
T Consensus 31 ~~~~i~g~~G~GKT~l~~~~~~~~~~~--~g~~vl~iS~E~~--~~~~~~r~~~~~ 82 (271)
T cd01122 31 ELIILTAGTGVGKTTFLREYALDLITQ--HGVRVGTISLEEP--VVRTARRLLGQY 82 (271)
T ss_pred cEEEEEcCCCCCHHHHHHHHHHHHHHh--cCceEEEEEcccC--HHHHHHHHHHHH
Confidence 588899999999999999988765332 1346788888764 345555555443
No 274
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=96.07 E-value=0.034 Score=58.21 Aligned_cols=54 Identities=28% Similarity=0.364 Sum_probs=40.6
Q ss_pred Cceeech---hhHHHHHHHHhcCCC---CCCCCeEEEEEEccCCCcHHHHHHHHHccccc
Q 007817 169 RAVYGRD---EDKARMLEMVLSDDP---TTDANFCVIPIVGMAGAGKTMLAREVYNDRAV 222 (588)
Q Consensus 169 ~~~vGR~---~e~~~l~~~L~~~~~---~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~ 222 (588)
.++-|-| .|+++|+++|.++.. -++.-++=|.++|++|.|||-||++++-...+
T Consensus 304 ~dVkG~DEAK~ELeEiVefLkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGEA~V 363 (752)
T KOG0734|consen 304 EDVKGVDEAKQELEEIVEFLKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGEAGV 363 (752)
T ss_pred ccccChHHHHHHHHHHHHHhcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhcccCC
Confidence 3456765 477888888876642 12344677889999999999999999987655
No 275
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=96.06 E-value=0.049 Score=52.96 Aligned_cols=41 Identities=15% Similarity=0.276 Sum_probs=31.3
Q ss_pred CeEEEEEEccCCCcHHHHHHHHHcccccccccccEEEEEEeCCc
Q 007817 195 NFCVIPIVGMAGAGKTMLAREVYNDRAVQNFKFDVKAWVSVSDD 238 (588)
Q Consensus 195 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~wv~v~~~ 238 (588)
.-.++.|.|++|+|||+||.++....-. .-..++||+...+
T Consensus 20 ~gs~~lI~G~pGsGKT~la~~~l~~~~~---~ge~~lyvs~ee~ 60 (237)
T TIGR03877 20 ERNVVLLSGGPGTGKSIFSQQFLWNGLQ---MGEPGIYVALEEH 60 (237)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHH---cCCcEEEEEeeCC
Confidence 4579999999999999999887654322 2356788887654
No 276
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=96.02 E-value=0.054 Score=50.53 Aligned_cols=122 Identities=16% Similarity=0.165 Sum_probs=69.6
Q ss_pred EEEEEEccCCCcHHHHHHHHHcccccccccccEEEEEEeC-------------------Ccc------------------
Q 007817 197 CVIPIVGMAGAGKTMLAREVYNDRAVQNFKFDVKAWVSVS-------------------DDF------------------ 239 (588)
Q Consensus 197 ~vv~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~wv~v~-------------------~~~------------------ 239 (588)
.|++|+|++|+|||||.+-+..-.... ...+||.-. +.|
T Consensus 29 evv~iiGpSGSGKSTlLRclN~LE~~~----~G~I~i~g~~~~~~~~~~~~R~~vGmVFQ~fnLFPHlTvleNv~lap~~ 104 (240)
T COG1126 29 EVVVIIGPSGSGKSTLLRCLNGLEEPD----SGSITVDGEDVGDKKDILKLRRKVGMVFQQFNLFPHLTVLENVTLAPVK 104 (240)
T ss_pred CEEEEECCCCCCHHHHHHHHHCCcCCC----CceEEECCEeccchhhHHHHHHhcCeecccccccccchHHHHHHhhhHH
Confidence 599999999999999999987644332 244555321 111
Q ss_pred -------cHHHHHHHHHHHhcCCCC-----C-CCCHHHHHHHHHHHhcCCceeEEecccccc-ChhHHHHhhcccCC-CC
Q 007817 240 -------DVLRISRALLESITSTNC-----D-FKTLNEVQVKLRIIVDGKKFLLVLDDVWNE-NYNLWEILKAPFMA-GA 304 (588)
Q Consensus 240 -------~~~~~~~~il~~l~~~~~-----~-~~~~~~l~~~l~~~l~~k~~LLVlDdv~~~-~~~~~~~l~~~l~~-~~ 304 (588)
...+...++++.++.... . .+...+..-.+.+.|.=++=++.+|..-+. +++....+...+.. ..
T Consensus 105 v~~~~k~eA~~~A~~lL~~VGL~~ka~~yP~qLSGGQqQRVAIARALaM~P~vmLFDEPTSALDPElv~EVL~vm~~LA~ 184 (240)
T COG1126 105 VKKLSKAEAREKALELLEKVGLADKADAYPAQLSGGQQQRVAIARALAMDPKVMLFDEPTSALDPELVGEVLDVMKDLAE 184 (240)
T ss_pred HcCCCHHHHHHHHHHHHHHcCchhhhhhCccccCcHHHHHHHHHHHHcCCCCEEeecCCcccCCHHHHHHHHHHHHHHHH
Confidence 122333344444443221 1 122233334677777778889999998543 33444444443332 23
Q ss_pred CCcEEEEeecchhhhhhc
Q 007817 305 RNSKIIVTTCHSNVASMM 322 (588)
Q Consensus 305 ~gs~ilvTTR~~~v~~~~ 322 (588)
.|-..|+.|..-..|..+
T Consensus 185 eGmTMivVTHEM~FAr~V 202 (240)
T COG1126 185 EGMTMIIVTHEMGFAREV 202 (240)
T ss_pred cCCeEEEEechhHHHHHh
Confidence 566777777777666654
No 277
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=96.01 E-value=0.099 Score=52.67 Aligned_cols=44 Identities=14% Similarity=0.104 Sum_probs=31.9
Q ss_pred ceeechhhHHHHHHHHhcCCCCCCCCeEEEEEEccCCCcHHHHHHHHHcccc
Q 007817 170 AVYGRDEDKARMLEMVLSDDPTTDANFCVIPIVGMAGAGKTMLAREVYNDRA 221 (588)
Q Consensus 170 ~~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~ 221 (588)
.++=.......+..++... +.|.|.|++|+||||+|+.++....
T Consensus 46 ~y~f~~~~~~~vl~~l~~~--------~~ilL~G~pGtGKTtla~~lA~~l~ 89 (327)
T TIGR01650 46 AYLFDKATTKAICAGFAYD--------RRVMVQGYHGTGKSTHIEQIAARLN 89 (327)
T ss_pred CccCCHHHHHHHHHHHhcC--------CcEEEEeCCCChHHHHHHHHHHHHC
Confidence 3443444556677777532 3589999999999999999998653
No 278
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=96.01 E-value=0.0046 Score=61.29 Aligned_cols=91 Identities=21% Similarity=0.294 Sum_probs=49.2
Q ss_pred HHHHHHHHhcCCCCCCCCeEEEEEEccCCCcHHHHHHHHHcccccccccccEEEEEEeCCcccHHHHHHHHHHHhcCCCC
Q 007817 178 KARMLEMVLSDDPTTDANFCVIPIVGMAGAGKTMLAREVYNDRAVQNFKFDVKAWVSVSDDFDVLRISRALLESITSTNC 257 (588)
Q Consensus 178 ~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~il~~l~~~~~ 257 (588)
...+++.+.... +-+.++|+.|+|||++++...+...... | ...-++.+...+...+ +.+++.-.....
T Consensus 22 ~~~ll~~l~~~~-------~pvLl~G~~GtGKT~li~~~l~~l~~~~--~-~~~~~~~s~~Tts~~~-q~~ie~~l~k~~ 90 (272)
T PF12775_consen 22 YSYLLDLLLSNG-------RPVLLVGPSGTGKTSLIQNFLSSLDSDK--Y-LVITINFSAQTTSNQL-QKIIESKLEKRR 90 (272)
T ss_dssp HHHHHHHHHHCT-------EEEEEESSTTSSHHHHHHHHHHCSTTCC--E-EEEEEES-TTHHHHHH-HHCCCTTECECT
T ss_pred HHHHHHHHHHcC-------CcEEEECCCCCchhHHHHhhhccCCccc--c-ceeEeeccCCCCHHHH-HHHHhhcEEcCC
Confidence 455666666543 4668999999999999999887544322 2 2334555554333333 222222110000
Q ss_pred CCCCHHHHHHHHHHHhcCCceeEEecccccc
Q 007817 258 DFKTLNEVQVKLRIIVDGKKFLLVLDDVWNE 288 (588)
Q Consensus 258 ~~~~~~~l~~~l~~~l~~k~~LLVlDdv~~~ 288 (588)
.. . -.--.+|+.++.+||+.-.
T Consensus 91 ~~-~--------~gP~~~k~lv~fiDDlN~p 112 (272)
T PF12775_consen 91 GR-V--------YGPPGGKKLVLFIDDLNMP 112 (272)
T ss_dssp TE-E--------EEEESSSEEEEEEETTT-S
T ss_pred CC-C--------CCCCCCcEEEEEecccCCC
Confidence 00 0 0001368899999999543
No 279
>PRK08233 hypothetical protein; Provisional
Probab=96.01 E-value=0.0056 Score=56.73 Aligned_cols=25 Identities=28% Similarity=0.442 Sum_probs=22.5
Q ss_pred eEEEEEEccCCCcHHHHHHHHHccc
Q 007817 196 FCVIPIVGMAGAGKTMLAREVYNDR 220 (588)
Q Consensus 196 ~~vv~I~G~gGiGKTtLA~~v~~~~ 220 (588)
..+|+|.|.+|+||||||..+....
T Consensus 3 ~~iI~I~G~~GsGKtTla~~L~~~l 27 (182)
T PRK08233 3 TKIITIAAVSGGGKTTLTERLTHKL 27 (182)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhhC
Confidence 3799999999999999999998754
No 280
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=96.00 E-value=0.0091 Score=55.06 Aligned_cols=24 Identities=38% Similarity=0.545 Sum_probs=21.3
Q ss_pred EEEEEccCCCcHHHHHHHHHcccc
Q 007817 198 VIPIVGMAGAGKTMLAREVYNDRA 221 (588)
Q Consensus 198 vv~I~G~gGiGKTtLA~~v~~~~~ 221 (588)
.|.|.|++|+||||+|+.+.+...
T Consensus 2 riiilG~pGaGK~T~A~~La~~~~ 25 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKKLG 25 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhC
Confidence 478999999999999999999743
No 281
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=95.97 E-value=0.0076 Score=53.93 Aligned_cols=28 Identities=36% Similarity=0.434 Sum_probs=24.4
Q ss_pred eEEEEEEccCCCcHHHHHHHHHcccccc
Q 007817 196 FCVIPIVGMAGAGKTMLAREVYNDRAVQ 223 (588)
Q Consensus 196 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 223 (588)
..+|.|+|.+|+||||||+.+.+.....
T Consensus 2 g~vIwltGlsGsGKtTlA~~L~~~L~~~ 29 (156)
T PF01583_consen 2 GFVIWLTGLSGSGKTTLARALERRLFAR 29 (156)
T ss_dssp -EEEEEESSTTSSHHHHHHHHHHHHHHT
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 3699999999999999999999977654
No 282
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.97 E-value=0.062 Score=55.09 Aligned_cols=90 Identities=13% Similarity=0.127 Sum_probs=55.2
Q ss_pred CeEEEEEEccCCCcHHHHHHHHHcccccccccccEEEEEEeCCc-ccHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHh
Q 007817 195 NFCVIPIVGMAGAGKTMLAREVYNDRAVQNFKFDVKAWVSVSDD-FDVLRISRALLESITSTNCDFKTLNEVQVKLRIIV 273 (588)
Q Consensus 195 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~wv~v~~~-~~~~~~~~~il~~l~~~~~~~~~~~~l~~~l~~~l 273 (588)
+..+++|+|+.|+||||++..++.....++ ..+.+|+.... ....+-++...+.++.+.....+..++...+...-
T Consensus 205 ~~~ii~lvGptGvGKTTt~akLA~~l~~~g---~~V~lItaDtyR~gAveQLk~yae~lgvpv~~~~dp~dL~~al~~l~ 281 (407)
T PRK12726 205 NHRIISLIGQTGVGKTTTLVKLGWQLLKQN---RTVGFITTDTFRSGAVEQFQGYADKLDVELIVATSPAELEEAVQYMT 281 (407)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcC---CeEEEEeCCccCccHHHHHHHHhhcCCCCEEecCCHHHHHHHHHHHH
Confidence 468999999999999999999987653322 24556665432 12344455555555543323345666655555432
Q ss_pred c-CCceeEEeccccc
Q 007817 274 D-GKKFLLVLDDVWN 287 (588)
Q Consensus 274 ~-~k~~LLVlDdv~~ 287 (588)
. +..=++++|-.-.
T Consensus 282 ~~~~~D~VLIDTAGr 296 (407)
T PRK12726 282 YVNCVDHILIDTVGR 296 (407)
T ss_pred hcCCCCEEEEECCCC
Confidence 1 3456888887743
No 283
>PRK05480 uridine/cytidine kinase; Provisional
Probab=95.96 E-value=0.0064 Score=57.89 Aligned_cols=27 Identities=33% Similarity=0.555 Sum_probs=23.9
Q ss_pred CCeEEEEEEccCCCcHHHHHHHHHccc
Q 007817 194 ANFCVIPIVGMAGAGKTMLAREVYNDR 220 (588)
Q Consensus 194 ~~~~vv~I~G~gGiGKTtLA~~v~~~~ 220 (588)
.+..+|+|.|.+|+|||||++.+....
T Consensus 4 ~~~~iI~I~G~sGsGKTTl~~~l~~~l 30 (209)
T PRK05480 4 KKPIIIGIAGGSGSGKTTVASTIYEEL 30 (209)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 356899999999999999999999854
No 284
>PRK06217 hypothetical protein; Validated
Probab=95.96 E-value=0.012 Score=54.65 Aligned_cols=35 Identities=26% Similarity=0.437 Sum_probs=25.7
Q ss_pred EEEEEccCCCcHHHHHHHHHcccccccccccEEEE
Q 007817 198 VIPIVGMAGAGKTMLAREVYNDRAVQNFKFDVKAW 232 (588)
Q Consensus 198 vv~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~w 232 (588)
.|.|.|.+|+||||||+.+.+........-|..+|
T Consensus 3 ~I~i~G~~GsGKSTla~~L~~~l~~~~~~~D~~~~ 37 (183)
T PRK06217 3 RIHITGASGSGTTTLGAALAERLDIPHLDTDDYFW 37 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCcEEEcCceee
Confidence 48999999999999999999876433212244555
No 285
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=95.95 E-value=0.12 Score=55.27 Aligned_cols=131 Identities=17% Similarity=0.199 Sum_probs=79.0
Q ss_pred eEEEEEEccCCCcHHHHHHHHHcccccccccccEEEEEEeCCcccHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhcC
Q 007817 196 FCVIPIVGMAGAGKTMLAREVYNDRAVQNFKFDVKAWVSVSDDFDVLRISRALLESITSTNCDFKTLNEVQVKLRIIVDG 275 (588)
Q Consensus 196 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~il~~l~~~~~~~~~~~~l~~~l~~~l~~ 275 (588)
+.=|.++|++|.|||-||++|+|.... +| +++-.+ +++...-+ .+...+....++.=..
T Consensus 545 PsGvLL~GPPGCGKTLlAKAVANEag~---NF-----isVKGP--------ELlNkYVG-----ESErAVR~vFqRAR~s 603 (802)
T KOG0733|consen 545 PSGVLLCGPPGCGKTLLAKAVANEAGA---NF-----ISVKGP--------ELLNKYVG-----ESERAVRQVFQRARAS 603 (802)
T ss_pred CCceEEeCCCCccHHHHHHHHhhhccC---ce-----EeecCH--------HHHHHHhh-----hHHHHHHHHHHHhhcC
Confidence 456789999999999999999996544 34 444332 22222111 1122222233333346
Q ss_pred CceeEEecccccc-----------ChhHHHHhhcccCC--CCCCcEEEEeecchhhhhh--cc---ccceeeCCCCCHHH
Q 007817 276 KKFLLVLDDVWNE-----------NYNLWEILKAPFMA--GARNSKIIVTTCHSNVASM--MG---SVEHYNLKLLSDEY 337 (588)
Q Consensus 276 k~~LLVlDdv~~~-----------~~~~~~~l~~~l~~--~~~gs~ilvTTR~~~v~~~--~~---~~~~~~l~~L~~~e 337 (588)
-+++|.||.++.. .....++|+.-+.. ...|.-||-.|..+++... +. -...+.++.-+.+|
T Consensus 604 aPCVIFFDEiDaL~p~R~~~~s~~s~RvvNqLLtElDGl~~R~gV~viaATNRPDiIDpAiLRPGRlDk~LyV~lPn~~e 683 (802)
T KOG0733|consen 604 APCVIFFDEIDALVPRRSDEGSSVSSRVVNQLLTELDGLEERRGVYVIAATNRPDIIDPAILRPGRLDKLLYVGLPNAEE 683 (802)
T ss_pred CCeEEEecchhhcCcccCCCCchhHHHHHHHHHHHhcccccccceEEEeecCCCcccchhhcCCCccCceeeecCCCHHH
Confidence 7999999998431 11233444444433 2356777877776665433 11 23567788888888
Q ss_pred HHHHHHHhhc
Q 007817 338 CWSVFVKHAF 347 (588)
Q Consensus 338 a~~Lf~~~a~ 347 (588)
-..+++...-
T Consensus 684 R~~ILK~~tk 693 (802)
T KOG0733|consen 684 RVAILKTITK 693 (802)
T ss_pred HHHHHHHHhc
Confidence 8888888764
No 286
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=95.94 E-value=0.015 Score=51.99 Aligned_cols=24 Identities=33% Similarity=0.556 Sum_probs=21.1
Q ss_pred EEEEEccCCCcHHHHHHHHHcccc
Q 007817 198 VIPIVGMAGAGKTMLAREVYNDRA 221 (588)
Q Consensus 198 vv~I~G~gGiGKTtLA~~v~~~~~ 221 (588)
++.|+|.+|+||||||+.+.....
T Consensus 1 ~i~i~G~~GsGKSTla~~L~~~l~ 24 (149)
T cd02027 1 VIWLTGLSGSGKSTIARALEEKLF 24 (149)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHH
Confidence 578999999999999999988653
No 287
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=95.93 E-value=0.035 Score=52.42 Aligned_cols=23 Identities=30% Similarity=0.550 Sum_probs=21.4
Q ss_pred EEEEEEccCCCcHHHHHHHHHcc
Q 007817 197 CVIPIVGMAGAGKTMLAREVYND 219 (588)
Q Consensus 197 ~vv~I~G~gGiGKTtLA~~v~~~ 219 (588)
.+++|+|..|.|||||.+.+...
T Consensus 27 e~~~i~G~nGsGKStLl~~l~G~ 49 (200)
T cd03217 27 EVHALMGPNGSGKSTLAKTIMGH 49 (200)
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 59999999999999999999876
No 288
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=95.92 E-value=0.053 Score=50.70 Aligned_cols=43 Identities=26% Similarity=0.198 Sum_probs=29.5
Q ss_pred EEEEEEccCCCcHHHHHHHHHccccccccc-------ccEEEEEEeCCcc
Q 007817 197 CVIPIVGMAGAGKTMLAREVYNDRAVQNFK-------FDVKAWVSVSDDF 239 (588)
Q Consensus 197 ~vv~I~G~gGiGKTtLA~~v~~~~~~~~~~-------f~~~~wv~v~~~~ 239 (588)
.++.|.|++|+||||++..+.......... -..++|++...+.
T Consensus 33 ~l~~i~g~~g~GKT~~~~~l~~~~~~g~~~~g~~~~~~~~Vl~i~~E~~~ 82 (193)
T PF13481_consen 33 ELTLIAGPPGSGKTTLALQLAAALATGRPFLGELPPRPGRVLYISLEDSE 82 (193)
T ss_dssp SEEEEEECSTSSHHHHHHHHHHHHHT---TT---------EEEEESSS-H
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHHHhCCccCCcccccCceEEEEeccCCH
Confidence 488899999999999998888766532201 1367888887764
No 289
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=95.92 E-value=0.0059 Score=46.68 Aligned_cols=23 Identities=30% Similarity=0.599 Sum_probs=20.6
Q ss_pred EEEEEccCCCcHHHHHHHHHccc
Q 007817 198 VIPIVGMAGAGKTMLAREVYNDR 220 (588)
Q Consensus 198 vv~I~G~gGiGKTtLA~~v~~~~ 220 (588)
+++|.|.+|+||||+++.+.+..
T Consensus 1 ~i~i~G~~gsGKst~~~~l~~~l 23 (69)
T cd02019 1 IIAITGGSGSGKSTVAKKLAEQL 23 (69)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999998864
No 290
>PRK06762 hypothetical protein; Provisional
Probab=95.88 E-value=0.0065 Score=55.48 Aligned_cols=24 Identities=33% Similarity=0.524 Sum_probs=21.9
Q ss_pred EEEEEEccCCCcHHHHHHHHHccc
Q 007817 197 CVIPIVGMAGAGKTMLAREVYNDR 220 (588)
Q Consensus 197 ~vv~I~G~gGiGKTtLA~~v~~~~ 220 (588)
.+|.|.|++|+||||+|+.+.+..
T Consensus 3 ~li~i~G~~GsGKST~A~~L~~~l 26 (166)
T PRK06762 3 TLIIIRGNSGSGKTTIAKQLQERL 26 (166)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 689999999999999999998754
No 291
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.87 E-value=0.028 Score=52.01 Aligned_cols=24 Identities=25% Similarity=0.473 Sum_probs=21.7
Q ss_pred EEEEEEccCCCcHHHHHHHHHccc
Q 007817 197 CVIPIVGMAGAGKTMLAREVYNDR 220 (588)
Q Consensus 197 ~vv~I~G~gGiGKTtLA~~v~~~~ 220 (588)
.+++|+|+.|+|||||++.+....
T Consensus 27 ~~~~i~G~nGsGKSTLl~~l~G~~ 50 (178)
T cd03229 27 EIVALLGPSGSGKSTLLRCIAGLE 50 (178)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 589999999999999999998654
No 292
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=95.87 E-value=0.0077 Score=57.27 Aligned_cols=26 Identities=38% Similarity=0.576 Sum_probs=23.1
Q ss_pred CeEEEEEEccCCCcHHHHHHHHHccc
Q 007817 195 NFCVIPIVGMAGAGKTMLAREVYNDR 220 (588)
Q Consensus 195 ~~~vv~I~G~gGiGKTtLA~~v~~~~ 220 (588)
...+|+|+|++|+|||||++.+....
T Consensus 5 ~g~vi~I~G~sGsGKSTl~~~l~~~l 30 (207)
T TIGR00235 5 KGIIIGIGGGSGSGKTTVARKIYEQL 30 (207)
T ss_pred CeEEEEEECCCCCCHHHHHHHHHHHh
Confidence 45799999999999999999998754
No 293
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.87 E-value=0.082 Score=49.82 Aligned_cols=25 Identities=32% Similarity=0.445 Sum_probs=22.3
Q ss_pred EEEEEEccCCCcHHHHHHHHHcccc
Q 007817 197 CVIPIVGMAGAGKTMLAREVYNDRA 221 (588)
Q Consensus 197 ~vv~I~G~gGiGKTtLA~~v~~~~~ 221 (588)
-+.+|.||.|+||||||..+.-++.
T Consensus 31 EvhaiMGPNGsGKSTLa~~i~G~p~ 55 (251)
T COG0396 31 EVHAIMGPNGSGKSTLAYTIMGHPK 55 (251)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCC
Confidence 5889999999999999999987764
No 294
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=95.87 E-value=0.01 Score=57.85 Aligned_cols=65 Identities=23% Similarity=0.198 Sum_probs=47.8
Q ss_pred HHHHHHHhcCCCCCCCCeEEEEEEccCCCcHHHHHHHHHcccccccccccEEEEEEeCCcccHHHHHHHH
Q 007817 179 ARMLEMVLSDDPTTDANFCVIPIVGMAGAGKTMLAREVYNDRAVQNFKFDVKAWVSVSDDFDVLRISRAL 248 (588)
Q Consensus 179 ~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i 248 (588)
.+|+..+... .++..+|+|.|.||+|||||...+......++ +--.++=|+-|.+++--.++.+=
T Consensus 38 ~~ll~~l~p~----tG~a~viGITG~PGaGKSTli~~L~~~l~~~G-~rVaVlAVDPSSp~TGGsiLGDR 102 (323)
T COG1703 38 RELLRALYPR----TGNAHVIGITGVPGAGKSTLIEALGRELRERG-HRVAVLAVDPSSPFTGGSILGDR 102 (323)
T ss_pred HHHHHHHhhc----CCCCcEEEecCCCCCchHHHHHHHHHHHHHCC-cEEEEEEECCCCCCCCccccccH
Confidence 3455555433 25778999999999999999999988887766 55667777778887766555443
No 295
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=95.85 E-value=0.044 Score=49.89 Aligned_cols=118 Identities=12% Similarity=0.001 Sum_probs=61.4
Q ss_pred EEEEEEccCCCcHHHHHHHHHcccccccccccEEE--EEEeCCcccHHHHHHHHHHHh---cCCCC-CCCC-------HH
Q 007817 197 CVIPIVGMAGAGKTMLAREVYNDRAVQNFKFDVKA--WVSVSDDFDVLRISRALLESI---TSTNC-DFKT-------LN 263 (588)
Q Consensus 197 ~vv~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~--wv~v~~~~~~~~~~~~il~~l---~~~~~-~~~~-------~~ 263 (588)
..|-|++..|.||||+|..+.-.....+ +.+.+ |+.-........++..+.-.+ +.... ...+ ..
T Consensus 6 Gli~v~~g~GkGKtt~a~g~a~ra~~~g--~~v~ivQFlKg~~~~GE~~~l~~~~~~~~~~g~g~~~~~~~~~~~~~~~~ 83 (173)
T TIGR00708 6 GIIIVHTGNGKGKTTAAFGMALRALGHG--KKVGVIQFIKGAWPNGERAAFEPHGVEFQVMGTGFTWETQNREADTAIAK 83 (173)
T ss_pred cEEEEECCCCCChHHHHHHHHHHHHHCC--CeEEEEEEecCCcccChHHHHHhcCcEEEECCCCCeecCCCcHHHHHHHH
Confidence 5788888899999999987776544332 22211 333332233344444320000 00000 0011 11
Q ss_pred HHHHHHHHHhcCC-ceeEEeccccc---cChhHHHHhhcccCCCCCCcEEEEeecch
Q 007817 264 EVQVKLRIIVDGK-KFLLVLDDVWN---ENYNLWEILKAPFMAGARNSKIIVTTCHS 316 (588)
Q Consensus 264 ~l~~~l~~~l~~k-~~LLVlDdv~~---~~~~~~~~l~~~l~~~~~gs~ilvTTR~~ 316 (588)
+.....++.+... -=|||||.+-. ...-..+.+...+.....+..||+|-|+.
T Consensus 84 ~~~~~a~~~l~~~~~DlvVLDEi~~A~~~gli~~~~v~~lL~~rp~~~evVlTGR~~ 140 (173)
T TIGR00708 84 AAWQHAKEMLADPELDLVLLDELTYALKYGYLDVEEVVEALQERPGHQHVIITGRGC 140 (173)
T ss_pred HHHHHHHHHHhcCCCCEEEehhhHHHHHCCCcCHHHHHHHHHhCCCCCEEEEECCCC
Confidence 2223344445444 45999999731 11123345555555556678899999986
No 296
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=95.85 E-value=0.051 Score=56.29 Aligned_cols=83 Identities=20% Similarity=0.179 Sum_probs=51.0
Q ss_pred CeEEEEEEccCCCcHHHHHHHHHcccccccccccEEEEEEeCCcccHHHHHHHHHHHhcCCCC-----CCCCHHHHHHHH
Q 007817 195 NFCVIPIVGMAGAGKTMLAREVYNDRAVQNFKFDVKAWVSVSDDFDVLRISRALLESITSTNC-----DFKTLNEVQVKL 269 (588)
Q Consensus 195 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~il~~l~~~~~-----~~~~~~~l~~~l 269 (588)
.-.++.|.|.+|+|||||+.+++...... -..++|++..... ..+ ..-+..++.... ...+.+.+...+
T Consensus 81 ~GslvLI~G~pG~GKStLllq~a~~~a~~---g~~VlYvs~EEs~--~qi-~~Ra~rlg~~~~~l~l~~e~~le~I~~~i 154 (372)
T cd01121 81 PGSVILIGGDPGIGKSTLLLQVAARLAKR---GGKVLYVSGEESP--EQI-KLRADRLGISTENLYLLAETNLEDILASI 154 (372)
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHHhc---CCeEEEEECCcCH--HHH-HHHHHHcCCCcccEEEEccCcHHHHHHHH
Confidence 34699999999999999999998765432 2467788776543 222 222344443221 123444444443
Q ss_pred HHHhcCCceeEEecccc
Q 007817 270 RIIVDGKKFLLVLDDVW 286 (588)
Q Consensus 270 ~~~l~~k~~LLVlDdv~ 286 (588)
. ..++-+||+|.+.
T Consensus 155 ~---~~~~~lVVIDSIq 168 (372)
T cd01121 155 E---ELKPDLVIIDSIQ 168 (372)
T ss_pred H---hcCCcEEEEcchH
Confidence 2 3467789999984
No 297
>PRK05917 DNA polymerase III subunit delta'; Validated
Probab=95.84 E-value=0.12 Score=51.26 Aligned_cols=131 Identities=7% Similarity=0.082 Sum_probs=75.4
Q ss_pred HHHHHHHHhcCCCCCCCCeEEEEEEccCCCcHHHHHHHHHcccccc-----------cccccEEEEEEeCCcccHHHHHH
Q 007817 178 KARMLEMVLSDDPTTDANFCVIPIVGMAGAGKTMLAREVYNDRAVQ-----------NFKFDVKAWVSVSDDFDVLRISR 246 (588)
Q Consensus 178 ~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~-----------~~~f~~~~wv~v~~~~~~~~~~~ 246 (588)
-++|...+.... -.....++|+.|+||+++|..+....--. +.|.|.....+....
T Consensus 6 ~~~L~~~i~~~r-----l~HAyLf~G~~G~Gk~~lA~~~A~~llC~~~~~~c~~~~~~~HPD~~~i~p~~~~-------- 72 (290)
T PRK05917 6 WEALIQRVRDQK-----VPSAIILHGQDLSNLSARAYELASLILKETSPEAAYKISQKIHPDIHEFSPQGKG-------- 72 (290)
T ss_pred HHHHHHHHHcCC-----cCeeEeeECCCCCcHHHHHHHHHHHHhCCCCccHHHHHhcCCCCCEEEEecCCCC--------
Confidence 345666665432 34678899999999999998877654221 112222211111100
Q ss_pred HHHHHhcCCCCCCCCHHHHHHHHHHHh-----cCCceeEEeccccccChhHHHHhhcccCCCCCCcEEEEeecch-hhhh
Q 007817 247 ALLESITSTNCDFKTLNEVQVKLRIIV-----DGKKFLLVLDDVWNENYNLWEILKAPFMAGARNSKIIVTTCHS-NVAS 320 (588)
Q Consensus 247 ~il~~l~~~~~~~~~~~~l~~~l~~~l-----~~k~~LLVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTTR~~-~v~~ 320 (588)
..-..++.. .+.+.+ .++.=++|+|++...+...++.++..+.....++.+|++|.+. .+..
T Consensus 73 -----------~~I~idqiR-~l~~~~~~~p~e~~~kv~ii~~ad~mt~~AaNaLLK~LEEPp~~~~fiL~~~~~~~ll~ 140 (290)
T PRK05917 73 -----------RLHSIETPR-AIKKQIWIHPYESPYKIYIIHEADRMTLDAISAFLKVLEDPPQHGVIILTSAKPQRLPP 140 (290)
T ss_pred -----------CcCcHHHHH-HHHHHHhhCccCCCceEEEEechhhcCHHHHHHHHHHhhcCCCCeEEEEEeCChhhCcH
Confidence 001222222 222222 2455588999998888889999998887766677776666654 4433
Q ss_pred h-ccccceeeCCCC
Q 007817 321 M-MGSVEHYNLKLL 333 (588)
Q Consensus 321 ~-~~~~~~~~l~~L 333 (588)
. ......+.+.++
T Consensus 141 TI~SRcq~~~~~~~ 154 (290)
T PRK05917 141 TIRSRSLSIHIPME 154 (290)
T ss_pred HHHhcceEEEccch
Confidence 3 223456666655
No 298
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=95.82 E-value=0.073 Score=55.75 Aligned_cols=24 Identities=33% Similarity=0.461 Sum_probs=20.9
Q ss_pred EEEEEEccCCCcHHHHHHHHHccc
Q 007817 197 CVIPIVGMAGAGKTMLAREVYNDR 220 (588)
Q Consensus 197 ~vv~I~G~gGiGKTtLA~~v~~~~ 220 (588)
.+++|+|++|+||||||+.+.--.
T Consensus 363 ~~lgIIGPSgSGKSTLaR~lvG~w 386 (580)
T COG4618 363 EALGIIGPSGSGKSTLARLLVGIW 386 (580)
T ss_pred ceEEEECCCCccHHHHHHHHHccc
Confidence 589999999999999999986543
No 299
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=95.82 E-value=0.016 Score=54.52 Aligned_cols=78 Identities=23% Similarity=0.285 Sum_probs=44.2
Q ss_pred CCeEEEEEEccCCCcHHHHHHHHHcccccccccccEEEEEEeCCcccHHHHHHHHHHH--hcCCCCCCCCHHHHHHHHHH
Q 007817 194 ANFCVIPIVGMAGAGKTMLAREVYNDRAVQNFKFDVKAWVSVSDDFDVLRISRALLES--ITSTNCDFKTLNEVQVKLRI 271 (588)
Q Consensus 194 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~il~~--l~~~~~~~~~~~~l~~~l~~ 271 (588)
..+.+|+|.|.+|+||||+|+.++...... . +.-++..+-+. ..-.....+. .....+..-+.+-+...|..
T Consensus 6 ~~~iiIgIaG~SgSGKTTva~~l~~~~~~~---~--~~~I~~D~YYk-~~~~~~~~~~~~~n~d~p~A~D~dLl~~~L~~ 79 (218)
T COG0572 6 EKVIIIGIAGGSGSGKTTVAKELSEQLGVE---K--VVVISLDDYYK-DQSHLPFEERNKINYDHPEAFDLDLLIEHLKD 79 (218)
T ss_pred CceEEEEEeCCCCCCHHHHHHHHHHHhCcC---c--ceEeecccccc-chhhcCHhhcCCcCccChhhhcHHHHHHHHHH
Confidence 356899999999999999999999855432 1 11112111111 0000001111 11122345567777788888
Q ss_pred HhcCCc
Q 007817 272 IVDGKK 277 (588)
Q Consensus 272 ~l~~k~ 277 (588)
.+++++
T Consensus 80 L~~g~~ 85 (218)
T COG0572 80 LKQGKP 85 (218)
T ss_pred HHcCCc
Confidence 888877
No 300
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=95.78 E-value=0.029 Score=55.26 Aligned_cols=41 Identities=22% Similarity=0.408 Sum_probs=30.9
Q ss_pred CeEEEEEEccCCCcHHHHHHHHHcccccccccccEEEEEEeCCc
Q 007817 195 NFCVIPIVGMAGAGKTMLAREVYNDRAVQNFKFDVKAWVSVSDD 238 (588)
Q Consensus 195 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~wv~v~~~ 238 (588)
.-.++.|.|++|+|||++|.+++..... .-..+++++...+
T Consensus 35 ~gs~~lI~G~pGtGKT~l~~qf~~~~a~---~Ge~vlyis~Ee~ 75 (259)
T TIGR03878 35 AYSVINITGVSDTGKSLMVEQFAVTQAS---RGNPVLFVTVESP 75 (259)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHh---CCCcEEEEEecCC
Confidence 4579999999999999999998665432 2246778888643
No 301
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=95.77 E-value=0.014 Score=55.60 Aligned_cols=23 Identities=22% Similarity=0.346 Sum_probs=20.6
Q ss_pred eEEEEEEccCCCcHHHHHHHHHc
Q 007817 196 FCVIPIVGMAGAGKTMLAREVYN 218 (588)
Q Consensus 196 ~~vv~I~G~gGiGKTtLA~~v~~ 218 (588)
.+++.|+|+.|.|||||.+.+..
T Consensus 29 ~~~~~itGpNg~GKStlLk~i~~ 51 (213)
T cd03281 29 PSIMVITGPNSSGKSVYLKQVAL 51 (213)
T ss_pred ceEEEEECCCCCChHHHHHHHHH
Confidence 37899999999999999999874
No 302
>PRK13948 shikimate kinase; Provisional
Probab=95.77 E-value=0.098 Score=48.42 Aligned_cols=26 Identities=19% Similarity=0.382 Sum_probs=23.0
Q ss_pred CeEEEEEEccCCCcHHHHHHHHHccc
Q 007817 195 NFCVIPIVGMAGAGKTMLAREVYNDR 220 (588)
Q Consensus 195 ~~~vv~I~G~gGiGKTtLA~~v~~~~ 220 (588)
....|.++|+.|+||||+++.+.+..
T Consensus 9 ~~~~I~LiG~~GsGKSTvg~~La~~l 34 (182)
T PRK13948 9 PVTWVALAGFMGTGKSRIGWELSRAL 34 (182)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHc
Confidence 45789999999999999999998864
No 303
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=95.74 E-value=0.022 Score=50.47 Aligned_cols=44 Identities=32% Similarity=0.423 Sum_probs=33.1
Q ss_pred EEEEEccCCCcHHHHHHHHHcccccccccccEEEEEEeCCcccHHHHHHHHHHHhcCC
Q 007817 198 VIPIVGMAGAGKTMLAREVYNDRAVQNFKFDVKAWVSVSDDFDVLRISRALLESITST 255 (588)
Q Consensus 198 vv~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~il~~l~~~ 255 (588)
+|.|.|++|+||||+|+.+.++...+- | +...+++++++..+..
T Consensus 2 ~ItIsG~pGsG~TTva~~lAe~~gl~~--------v------saG~iFR~~A~e~gms 45 (179)
T COG1102 2 VITISGLPGSGKTTVARELAEHLGLKL--------V------SAGTIFREMARERGMS 45 (179)
T ss_pred EEEeccCCCCChhHHHHHHHHHhCCce--------e------eccHHHHHHHHHcCCC
Confidence 689999999999999999999764431 1 2345778888776543
No 304
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=95.74 E-value=0.0078 Score=55.20 Aligned_cols=41 Identities=22% Similarity=0.167 Sum_probs=29.1
Q ss_pred eEEEEEEccCCCcHHHHHHHHHcccccccccccEEEEEEeCCc
Q 007817 196 FCVIPIVGMAGAGKTMLAREVYNDRAVQNFKFDVKAWVSVSDD 238 (588)
Q Consensus 196 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~wv~v~~~ 238 (588)
..++.+.|+.|+|||.||+.+.+-... + .....+-++++.-
T Consensus 3 ~~~~ll~GpsGvGKT~la~~la~~l~~-~-~~~~~~~~d~s~~ 43 (171)
T PF07724_consen 3 KSNFLLAGPSGVGKTELAKALAELLFV-G-SERPLIRIDMSEY 43 (171)
T ss_dssp SEEEEEESSTTSSHHHHHHHHHHHHT--S-SCCEEEEEEGGGH
T ss_pred EEEEEEECCCCCCHHHHHHHHHHHhcc-C-CccchHHHhhhcc
Confidence 468899999999999999999886552 1 2334555555543
No 305
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.73 E-value=0.11 Score=49.04 Aligned_cols=25 Identities=20% Similarity=0.405 Sum_probs=22.3
Q ss_pred EEEEEEccCCCcHHHHHHHHHcccc
Q 007817 197 CVIPIVGMAGAGKTMLAREVYNDRA 221 (588)
Q Consensus 197 ~vv~I~G~gGiGKTtLA~~v~~~~~ 221 (588)
.+++|+|+.|+|||||++.+.....
T Consensus 34 e~~~i~G~nGsGKSTLl~~l~G~~~ 58 (202)
T cd03233 34 EMVLVLGRPGSGCSTLLKALANRTE 58 (202)
T ss_pred cEEEEECCCCCCHHHHHHHhcccCC
Confidence 5999999999999999999987643
No 306
>PRK09519 recA DNA recombination protein RecA; Reviewed
Probab=95.71 E-value=0.032 Score=62.54 Aligned_cols=84 Identities=19% Similarity=0.177 Sum_probs=57.1
Q ss_pred CeEEEEEEccCCCcHHHHHHHHHcccccccccccEEEEEEeCCcccHHHHHHHHHHHhcCCCC-----CCCCHHHHHHHH
Q 007817 195 NFCVIPIVGMAGAGKTMLAREVYNDRAVQNFKFDVKAWVSVSDDFDVLRISRALLESITSTNC-----DFKTLNEVQVKL 269 (588)
Q Consensus 195 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~il~~l~~~~~-----~~~~~~~l~~~l 269 (588)
.-+++-|.|++|+||||||.+++..... .-..++|++....++.. .+++++.... ...+.+.....+
T Consensus 59 ~GsiteI~G~~GsGKTtLal~~~~~a~~---~G~~v~yId~E~t~~~~-----~A~~lGvDl~~llv~~~~~~E~~l~~i 130 (790)
T PRK09519 59 RGRVIEIYGPESSGKTTVALHAVANAQA---AGGVAAFIDAEHALDPD-----YAKKLGVDTDSLLVSQPDTGEQALEIA 130 (790)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHH---cCCcEEEECCccchhHH-----HHHHcCCChhHeEEecCCCHHHHHHHH
Confidence 4578999999999999999887664432 22467899988877742 5566654322 234445555555
Q ss_pred HHHhc-CCceeEEecccc
Q 007817 270 RIIVD-GKKFLLVLDDVW 286 (588)
Q Consensus 270 ~~~l~-~k~~LLVlDdv~ 286 (588)
...++ ++.-|||+|.+-
T Consensus 131 ~~lv~~~~~~LVVIDSI~ 148 (790)
T PRK09519 131 DMLIRSGALDIVVIDSVA 148 (790)
T ss_pred HHHhhcCCCeEEEEcchh
Confidence 55554 456799999974
No 307
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=95.71 E-value=0.03 Score=58.03 Aligned_cols=54 Identities=20% Similarity=0.286 Sum_probs=37.8
Q ss_pred CceeechhhHHHHHHHHhcC--------CCCCCCCeEEEEEEccCCCcHHHHHHHHHccccc
Q 007817 169 RAVYGRDEDKARMLEMVLSD--------DPTTDANFCVIPIVGMAGAGKTMLAREVYNDRAV 222 (588)
Q Consensus 169 ~~~vGR~~e~~~l~~~L~~~--------~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~ 222 (588)
..++|.++.++.+.-.+... .......++.|.++|++|+|||+||+.+......
T Consensus 12 ~~IiGQ~eAkk~lsvAl~n~~~r~~~~~~~~~e~~p~~ILLiGppG~GKT~lAraLA~~l~~ 73 (441)
T TIGR00390 12 KYIIGQDNAKKSVAIALRNRYRRSQLNEELKDEVTPKNILMIGPTGVGKTEIARRLAKLANA 73 (441)
T ss_pred hhccCHHHHHHHHHHHHHhhhhhhccccccccccCCceEEEECCCCCCHHHHHHHHHHHhCC
Confidence 45788888877776665532 0001123467899999999999999999987654
No 308
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=95.71 E-value=0.065 Score=51.76 Aligned_cols=48 Identities=17% Similarity=0.172 Sum_probs=31.4
Q ss_pred eEEEEEEccCCCcHHHHHHHHHcccccccccccEEEEEEeCCcccHHHHHHHH
Q 007817 196 FCVIPIVGMAGAGKTMLAREVYNDRAVQNFKFDVKAWVSVSDDFDVLRISRAL 248 (588)
Q Consensus 196 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i 248 (588)
-.++.|.|++|+||||||.+++.....++ ..+++++... +..++++.+
T Consensus 24 g~~~~i~G~~G~GKTtl~~~~~~~~~~~g---~~~~yi~~e~--~~~~~~~~~ 71 (230)
T PRK08533 24 GSLILIEGDESTGKSILSQRLAYGFLQNG---YSVSYVSTQL--TTTEFIKQM 71 (230)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHhCC---CcEEEEeCCC--CHHHHHHHH
Confidence 35999999999999999877666442222 3456666443 334555554
No 309
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=95.70 E-value=0.086 Score=57.32 Aligned_cols=133 Identities=15% Similarity=0.081 Sum_probs=76.5
Q ss_pred CCeEEEEEEccCCCcHHHHHHHHHcccccccccccEEEEEEeCCcccHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHh
Q 007817 194 ANFCVIPIVGMAGAGKTMLAREVYNDRAVQNFKFDVKAWVSVSDDFDVLRISRALLESITSTNCDFKTLNEVQVKLRIIV 273 (588)
Q Consensus 194 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~il~~l~~~~~~~~~~~~l~~~l~~~l 273 (588)
...+.+.++|++|.|||.||+.+++.... .|-.+. .. .++.... ......+........
T Consensus 274 ~~~~giLl~GpPGtGKT~lAkava~~~~~---~fi~v~-----~~--------~l~sk~v-----Gesek~ir~~F~~A~ 332 (494)
T COG0464 274 RPPKGVLLYGPPGTGKTLLAKAVALESRS---RFISVK-----GS--------ELLSKWV-----GESEKNIRELFEKAR 332 (494)
T ss_pred CCCCeeEEECCCCCCHHHHHHHHHhhCCC---eEEEee-----CH--------HHhcccc-----chHHHHHHHHHHHHH
Confidence 45568999999999999999999995433 332221 11 1111100 111222333334444
Q ss_pred cCCceeEEecccccc------C-----hhHHHHhhcccCC--CCCCcEEEEeecchhhhhhc-----cccceeeCCCCCH
Q 007817 274 DGKKFLLVLDDVWNE------N-----YNLWEILKAPFMA--GARNSKIIVTTCHSNVASMM-----GSVEHYNLKLLSD 335 (588)
Q Consensus 274 ~~k~~LLVlDdv~~~------~-----~~~~~~l~~~l~~--~~~gs~ilvTTR~~~v~~~~-----~~~~~~~l~~L~~ 335 (588)
+..++.|.+|++..- + .....+++..+.. ...+..||-||..+...... .-...+.+.+-+.
T Consensus 333 ~~~p~iiFiDEiDs~~~~r~~~~~~~~~r~~~~lL~~~d~~e~~~~v~vi~aTN~p~~ld~a~lR~gRfd~~i~v~~pd~ 412 (494)
T COG0464 333 KLAPSIIFIDEIDSLASGRGPSEDGSGRRVVGQLLTELDGIEKAEGVLVIAATNRPDDLDPALLRPGRFDRLIYVPLPDL 412 (494)
T ss_pred cCCCcEEEEEchhhhhccCCCCCchHHHHHHHHHHHHhcCCCccCceEEEecCCCccccCHhhcccCccceEeecCCCCH
Confidence 678999999998431 1 1233344444432 22344455555544333321 1235788999999
Q ss_pred HHHHHHHHHhhc
Q 007817 336 EYCWSVFVKHAF 347 (588)
Q Consensus 336 ~ea~~Lf~~~a~ 347 (588)
++..+.|..+..
T Consensus 413 ~~r~~i~~~~~~ 424 (494)
T COG0464 413 EERLEIFKIHLR 424 (494)
T ss_pred HHHHHHHHHHhc
Confidence 999999999874
No 310
>KOG2170 consensus ATPase of the AAA+ superfamily [General function prediction only]
Probab=95.70 E-value=0.049 Score=53.19 Aligned_cols=112 Identities=15% Similarity=0.219 Sum_probs=64.8
Q ss_pred ceeechhhHHHHHHH----HhcCCCCCCCCeEEEEEEccCCCcHHHHHHHHHcccccccccccEEEEEEeCCcccHHHHH
Q 007817 170 AVYGRDEDKARMLEM----VLSDDPTTDANFCVIPIVGMAGAGKTMLAREVYNDRAVQNFKFDVKAWVSVSDDFDVLRIS 245 (588)
Q Consensus 170 ~~vGR~~e~~~l~~~----L~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~ 245 (588)
.++|----++.++.. +..+. ..++-+++.+|.+|+||.-.++.++++....+-.-+. .
T Consensus 83 ~lfGQHla~~~Vv~alk~~~~n~~---p~KPLvLSfHG~tGTGKN~Va~iiA~n~~~~Gl~S~~---------------V 144 (344)
T KOG2170|consen 83 ALFGQHLAKQLVVNALKSHWANPN---PRKPLVLSFHGWTGTGKNYVAEIIAENLYRGGLRSPF---------------V 144 (344)
T ss_pred HhhchHHHHHHHHHHHHHHhcCCC---CCCCeEEEecCCCCCchhHHHHHHHHHHHhccccchh---------------H
Confidence 345544444444444 43332 4678899999999999999999999876543311111 1
Q ss_pred HHHHHHhcCCCCCCCCHHHHHHHHHHHhc-----CCceeEEeccccccChhHHHHhhcccC
Q 007817 246 RALLESITSTNCDFKTLNEVQVKLRIIVD-----GKKFLLVLDDVWNENYNLWEILKAPFM 301 (588)
Q Consensus 246 ~~il~~l~~~~~~~~~~~~l~~~l~~~l~-----~k~~LLVlDdv~~~~~~~~~~l~~~l~ 301 (588)
........ -+.....+.-+.+|++++. -++-|+|+|+++.......+.+...|.
T Consensus 145 ~~fvat~h--FP~~~~ie~Yk~eL~~~v~~~v~~C~rslFIFDE~DKmp~gLld~lkpfLd 203 (344)
T KOG2170|consen 145 HHFVATLH--FPHASKIEDYKEELKNRVRGTVQACQRSLFIFDEVDKLPPGLLDVLKPFLD 203 (344)
T ss_pred HHhhhhcc--CCChHHHHHHHHHHHHHHHHHHHhcCCceEEechhhhcCHhHHHHHhhhhc
Confidence 11111111 1122333333334444332 478999999998777767777766554
No 311
>PRK06002 fliI flagellum-specific ATP synthase; Validated
Probab=95.68 E-value=0.055 Score=56.86 Aligned_cols=86 Identities=19% Similarity=0.106 Sum_probs=49.3
Q ss_pred eEEEEEEccCCCcHHHHHHHHHcccccccccccEEEEEEeCCcccHHHHHHHHHHHhcCC-----CC-CCCCHH-----H
Q 007817 196 FCVIPIVGMAGAGKTMLAREVYNDRAVQNFKFDVKAWVSVSDDFDVLRISRALLESITST-----NC-DFKTLN-----E 264 (588)
Q Consensus 196 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~il~~l~~~-----~~-~~~~~~-----~ 264 (588)
-..++|+|..|+|||||++.+..... ....++++.-.+.-++.++....+...... .. +..... .
T Consensus 165 Gqri~I~G~SGsGKTTLL~~Ia~l~~----pd~gvv~liGergrev~e~~~~~l~~~r~rtI~vV~qsd~~~~~r~~~~~ 240 (450)
T PRK06002 165 GQRIGIFAGSGVGKSTLLAMLARADA----FDTVVIALVGERGREVREFLEDTLADNLKKAVAVVATSDESPMMRRLAPL 240 (450)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCC----CCeeeeeecccCCccHHHHhHHHHHHhhCCeEEEEEcCCCCHHHHHHHHH
Confidence 35899999999999999998886432 222445544334445555544444432111 11 111111 1
Q ss_pred HHHHHHHHh--cCCceeEEeccc
Q 007817 265 VQVKLRIIV--DGKKFLLVLDDV 285 (588)
Q Consensus 265 l~~~l~~~l--~~k~~LLVlDdv 285 (588)
....+.+++ +++.+||++||+
T Consensus 241 ~a~~iAEyfrd~G~~Vll~~Dsl 263 (450)
T PRK06002 241 TATAIAEYFRDRGENVLLIVDSV 263 (450)
T ss_pred HHHHHHHHHHHcCCCEEEeccch
Confidence 122344444 589999999998
No 312
>PRK06547 hypothetical protein; Provisional
Probab=95.68 E-value=0.01 Score=54.48 Aligned_cols=28 Identities=29% Similarity=0.399 Sum_probs=24.1
Q ss_pred CCeEEEEEEccCCCcHHHHHHHHHcccc
Q 007817 194 ANFCVIPIVGMAGAGKTMLAREVYNDRA 221 (588)
Q Consensus 194 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~ 221 (588)
....+|+|.|++|+||||+|+.+.+...
T Consensus 13 ~~~~~i~i~G~~GsGKTt~a~~l~~~~~ 40 (172)
T PRK06547 13 GGMITVLIDGRSGSGKTTLAGALAARTG 40 (172)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhC
Confidence 3568999999999999999999987643
No 313
>PF10236 DAP3: Mitochondrial ribosomal death-associated protein 3; InterPro: IPR019368 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of conserved proteins which were originally described as death-associated-protein-3 (DAP-3). The proteins carry a P-loop DNA-binding motif, and induce apoptosis []. DAP3 has been shown to be a pro-apoptotic factor in the mitochondrial matrix [] and to be crucial for mitochondrial biogenesis and so has also been designated as MRP-S29 (mitochondrial ribosomal protein subunit 29).
Probab=95.68 E-value=0.27 Score=49.80 Aligned_cols=49 Identities=18% Similarity=0.080 Sum_probs=33.6
Q ss_pred eeeCCCCCHHHHHHHHHHhhcCCCCCCCChhHHHHHHHHHHHhCCCchHH
Q 007817 327 HYNLKLLSDEYCWSVFVKHAFERRDAGAHQFSKLFRKKIVAKCGGLPLAV 376 (588)
Q Consensus 327 ~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~i~~~I~~~c~GlPLai 376 (588)
++++++++.+|+..++..+.-.+-. ......+...+++.-..+|+|--+
T Consensus 258 ~i~v~~~s~~E~~~ll~yy~~~~~l-~~~~~~~~~~e~~~~~s~GNp~el 306 (309)
T PF10236_consen 258 PIEVPRLSKEEARSLLEYYADSGWL-RSRVDEELVLEKLFLSSNGNPREL 306 (309)
T ss_pred eEEeCCCCHHHHHHHHHHHHHCCcc-ccCCCCHHHHHHHHHhcCCCHHHh
Confidence 7899999999999999987643222 111233344566777779999654
No 314
>PF08298 AAA_PrkA: PrkA AAA domain; InterPro: IPR013153 This is entry is found at the N terminus of PrkA proteins - bacterial and archaeal serine kinases approximately 630 residues in length. PrkA possesses the A-motif of nucleotide-binding proteins and exhibits distant homology to eukaryotic protein kinases []. Note that many of these are hypothetical.
Probab=95.67 E-value=0.013 Score=58.99 Aligned_cols=54 Identities=22% Similarity=0.348 Sum_probs=45.9
Q ss_pred CCceeechhhHHHHHHHHhcCCCCCCCCeEEEEEEccCCCcHHHHHHHHHcccc
Q 007817 168 ERAVYGRDEDKARMLEMVLSDDPTTDANFCVIPIVGMAGAGKTMLAREVYNDRA 221 (588)
Q Consensus 168 ~~~~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~ 221 (588)
...|+|.++.++++++.+.+.....+..-+++.++|+.|.||||||..+.+-.+
T Consensus 60 ~~~~~G~~~~i~~lV~~fk~AA~g~~~~krIl~L~GPvg~GKSsl~~~Lk~~le 113 (358)
T PF08298_consen 60 EDEFYGMEETIERLVNYFKSAAQGLEERKRILLLLGPVGGGKSSLAELLKRGLE 113 (358)
T ss_pred cccccCcHHHHHHHHHHHHHHHhccCccceEEEEECCCCCCHHHHHHHHHHHhh
Confidence 457999999999999999876554456678999999999999999999987544
No 315
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=95.67 E-value=0.024 Score=58.10 Aligned_cols=109 Identities=18% Similarity=0.201 Sum_probs=65.6
Q ss_pred ceeechhhHHHHHHHHhcCCCCCCCCeEEEEEEccCCCcHHHHHHHHHcccccccccccEEEEEEeCCcccHHHHHHHHH
Q 007817 170 AVYGRDEDKARMLEMVLSDDPTTDANFCVIPIVGMAGAGKTMLAREVYNDRAVQNFKFDVKAWVSVSDDFDVLRISRALL 249 (588)
Q Consensus 170 ~~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~il 249 (588)
.++|++.....+...+.... -+.+.|++|+|||+||+.++..... ...+|.+.......+++....
T Consensus 25 ~~~g~~~~~~~~l~a~~~~~--------~vll~G~PG~gKT~la~~lA~~l~~------~~~~i~~t~~l~p~d~~G~~~ 90 (329)
T COG0714 25 VVVGDEEVIELALLALLAGG--------HVLLEGPPGVGKTLLARALARALGL------PFVRIQCTPDLLPSDLLGTYA 90 (329)
T ss_pred eeeccHHHHHHHHHHHHcCC--------CEEEECCCCccHHHHHHHHHHHhCC------CeEEEecCCCCCHHHhcCchh
Confidence 38898888888888887653 5789999999999999999985432 234566666666555544333
Q ss_pred HHhcC---CCCCCCCHHHHHHHHHHHhcCCceeEEeccccccChhHHHHhhccc
Q 007817 250 ESITS---TNCDFKTLNEVQVKLRIIVDGKKFLLVLDDVWNENYNLWEILKAPF 300 (588)
Q Consensus 250 ~~l~~---~~~~~~~~~~l~~~l~~~l~~k~~LLVlDdv~~~~~~~~~~l~~~l 300 (588)
-.... ......+.. + ...-+.++++|.++......-..+...+
T Consensus 91 ~~~~~~~~~~~~~~~gp-----l---~~~~~~ill~DEInra~p~~q~aLl~~l 136 (329)
T COG0714 91 YAALLLEPGEFRFVPGP-----L---FAAVRVILLLDEINRAPPEVQNALLEAL 136 (329)
T ss_pred HhhhhccCCeEEEecCC-----c---ccccceEEEEeccccCCHHHHHHHHHHH
Confidence 22110 000000000 0 0011158999999877665555554443
No 316
>PF00006 ATP-synt_ab: ATP synthase alpha/beta family, nucleotide-binding domain This Pfam entry corresponds to chains a,b,c,d,e and f; InterPro: IPR000194 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The F-ATPases (or F1F0-ATPases), V-ATPases (or V1V0-ATPases) and A-ATPases (or A1A0-ATPases) are composed of two linked complexes: the F1, V1 or A1 complex contains the catalytic core that synthesizes/hydrolyses ATP, and the F0, V0 or A0 complex that forms the membrane-spanning pore. The F-, V- and A-ATPases all contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, ]. In F-ATPases, there are three copies each of the alpha and beta subunits that form the catalytic core of the F1 complex, while the remaining F1 subunits (gamma, delta, epsilon) form part of the stalks. There is a substrate-binding site on each of the alpha and beta subunits, those on the beta subunits being catalytic, while those on the alpha subunits are regulatory. The alpha and beta subunits form a cylinder that is attached to the central stalk. The alpha/beta subunits undergo a sequence of conformational changes leading to the formation of ATP from ADP, which are induced by the rotation of the gamma subunit, itself driven by the movement of protons through the F0 complex C subunit []. In V- and A-ATPases, the alpha/A and beta/B subunits of the V1 or A1 complex are homologous to the alpha and beta subunits in the F1 complex of F-ATPases, except that the alpha subunit is catalytic and the beta subunit is regulatory. The structure of the alpha and beta subunits is almost identical. Each subunit consists of a N-terminal beta-barrel, a central domain containing the nucleotide-binding site and a C-terminal alpha bundle domain []. This entry represents the central domain. It is found in the alpha and beta subunits from F1, V1, and A1 complexes, as well as in flagellar ATPase and the termination factor Rho. ; GO: 0005524 ATP binding; PDB: 3OEE_N 2HLD_W 3FKS_N 3OE7_O 3OFN_M 2XOK_D 3OEH_V 2WPD_F 3ZRY_D 2OBL_A ....
Probab=95.65 E-value=0.038 Score=52.57 Aligned_cols=84 Identities=25% Similarity=0.341 Sum_probs=52.0
Q ss_pred EEEEEEccCCCcHHHHHHHHHcccccccccccEEEEEEeCCc-ccHHHHHHHHHHHhcCCC-------CCCCCHHH----
Q 007817 197 CVIPIVGMAGAGKTMLAREVYNDRAVQNFKFDVKAWVSVSDD-FDVLRISRALLESITSTN-------CDFKTLNE---- 264 (588)
Q Consensus 197 ~vv~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~wv~v~~~-~~~~~~~~~il~~l~~~~-------~~~~~~~~---- 264 (588)
.-++|.|.+|+|||+|+..+.++.. -+..+++.+++. ..+.++.+++...-.... .+......
T Consensus 16 qr~~I~g~~g~GKt~Ll~~i~~~~~-----~d~~V~~~iGer~~Ev~~~~~~~~~~~~~~~t~vv~~t~~~~~~~r~~~~ 90 (215)
T PF00006_consen 16 QRIGIFGGAGVGKTVLLQEIANNQD-----ADVVVYALIGERGREVTEFIEELKGEGALERTVVVAATSDEPPAARYRAP 90 (215)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHCT-----TTEEEEEEESECHHHHHHHHHHHHHTTGGGGEEEEEEETTS-HHHHHHHH
T ss_pred CEEEEEcCcccccchhhHHHHhccc-----ccceeeeeccccchhHHHHHHHHhhcccccccccccccchhhHHHHhhhh
Confidence 5788999999999999999998763 234477888755 455666666644311110 01111111
Q ss_pred -HHHHHHHHh--cCCceeEEeccc
Q 007817 265 -VQVKLRIIV--DGKKFLLVLDDV 285 (588)
Q Consensus 265 -l~~~l~~~l--~~k~~LLVlDdv 285 (588)
..-.+.+++ +++..|+++||+
T Consensus 91 ~~a~t~AEyfrd~G~dVlli~Dsl 114 (215)
T PF00006_consen 91 YTALTIAEYFRDQGKDVLLIIDSL 114 (215)
T ss_dssp HHHHHHHHHHHHTTSEEEEEEETH
T ss_pred ccchhhhHHHhhcCCceeehhhhh
Confidence 111223333 689999999998
No 317
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=95.65 E-value=0.072 Score=52.79 Aligned_cols=88 Identities=14% Similarity=0.071 Sum_probs=48.5
Q ss_pred CeEEEEEEccCCCcHHHHHHHHHcccccccccccEEEEEEeCCcccH--HHHHHHHHHHhcCCC---CCCCCHHH-HHHH
Q 007817 195 NFCVIPIVGMAGAGKTMLAREVYNDRAVQNFKFDVKAWVSVSDDFDV--LRISRALLESITSTN---CDFKTLNE-VQVK 268 (588)
Q Consensus 195 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~wv~v~~~~~~--~~~~~~il~~l~~~~---~~~~~~~~-l~~~ 268 (588)
+.+++.++|++|+||||++..++......+ ..+..++... +.. .+-+....+..+... ....+... ....
T Consensus 71 ~~~vi~l~G~~G~GKTTt~akLA~~l~~~g---~~V~li~~D~-~r~~a~~ql~~~~~~~~i~~~~~~~~~dp~~~~~~~ 146 (272)
T TIGR00064 71 KPNVILFVGVNGVGKTTTIAKLANKLKKQG---KSVLLAAGDT-FRAAAIEQLEEWAKRLGVDVIKQKEGADPAAVAFDA 146 (272)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcC---CEEEEEeCCC-CCHHHHHHHHHHHHhCCeEEEeCCCCCCHHHHHHHH
Confidence 458999999999999999999887664322 2455555432 222 233334444444221 11122222 2233
Q ss_pred HHHHhcCCceeEEecccc
Q 007817 269 LRIIVDGKKFLLVLDDVW 286 (588)
Q Consensus 269 l~~~l~~k~~LLVlDdv~ 286 (588)
+.....+..=++++|-.-
T Consensus 147 l~~~~~~~~D~ViIDT~G 164 (272)
T TIGR00064 147 IQKAKARNIDVVLIDTAG 164 (272)
T ss_pred HHHHHHCCCCEEEEeCCC
Confidence 444444445578888763
No 318
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=95.63 E-value=0.16 Score=48.11 Aligned_cols=24 Identities=38% Similarity=0.443 Sum_probs=21.3
Q ss_pred EEEEEEccCCCcHHHHHHHHHccc
Q 007817 197 CVIPIVGMAGAGKTMLAREVYNDR 220 (588)
Q Consensus 197 ~vv~I~G~gGiGKTtLA~~v~~~~ 220 (588)
.+++|.|+.|+|||||++.+..-.
T Consensus 35 ~~~~i~G~nGsGKSTLl~~l~Gl~ 58 (207)
T cd03369 35 EKIGIVGRTGAGKSTLILALFRFL 58 (207)
T ss_pred CEEEEECCCCCCHHHHHHHHhccc
Confidence 589999999999999999997643
No 319
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=95.62 E-value=0.0088 Score=55.72 Aligned_cols=26 Identities=27% Similarity=0.376 Sum_probs=22.7
Q ss_pred CeEEEEEEccCCCcHHHHHHHHHccc
Q 007817 195 NFCVIPIVGMAGAGKTMLAREVYNDR 220 (588)
Q Consensus 195 ~~~vv~I~G~gGiGKTtLA~~v~~~~ 220 (588)
+.++|+|+|++|+||||+|+.+....
T Consensus 2 ~~~ii~i~G~~GsGKsTl~~~l~~~~ 27 (188)
T TIGR01360 2 KCKIIFIVGGPGSGKGTQCEKIVEKY 27 (188)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 35799999999999999999998643
No 320
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=95.62 E-value=0.022 Score=54.89 Aligned_cols=86 Identities=22% Similarity=0.198 Sum_probs=52.2
Q ss_pred CeEEEEEEccCCCcHHHHHHHHHcccccccccccEEEEEEeCCcccHHHHHHHHHHHhcCC---------------CCC-
Q 007817 195 NFCVIPIVGMAGAGKTMLAREVYNDRAVQNFKFDVKAWVSVSDDFDVLRISRALLESITST---------------NCD- 258 (588)
Q Consensus 195 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~il~~l~~~---------------~~~- 258 (588)
.-.++.|.|++|+|||+|+.++....-.+ .=..++||+...+. ..+.+.+- .++.. ...
T Consensus 18 ~gs~~li~G~~GsGKT~l~~q~l~~~~~~--~ge~vlyvs~ee~~--~~l~~~~~-s~g~d~~~~~~~g~l~~~d~~~~~ 92 (226)
T PF06745_consen 18 KGSVVLISGPPGSGKTTLALQFLYNGLKN--FGEKVLYVSFEEPP--EELIENMK-SFGWDLEEYEDSGKLKIIDAFPER 92 (226)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHHH--HT--EEEEESSS-H--HHHHHHHH-TTTS-HHHHHHTTSEEEEESSGGG
T ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHhhhh--cCCcEEEEEecCCH--HHHHHHHH-HcCCcHHHHhhcCCEEEEeccccc
Confidence 44699999999999999999877654332 02467888887654 33333221 22110 001
Q ss_pred ----CCCHHHHHHHHHHHhcC-CceeEEeccc
Q 007817 259 ----FKTLNEVQVKLRIIVDG-KKFLLVLDDV 285 (588)
Q Consensus 259 ----~~~~~~l~~~l~~~l~~-k~~LLVlDdv 285 (588)
..+.+.+...+.+.++. +...+|+|.+
T Consensus 93 ~~~~~~~~~~l~~~i~~~i~~~~~~~vVIDsl 124 (226)
T PF06745_consen 93 IGWSPNDLEELLSKIREAIEELKPDRVVIDSL 124 (226)
T ss_dssp ST-TSCCHHHHHHHHHHHHHHHTSSEEEEETH
T ss_pred ccccccCHHHHHHHHHHHHHhcCCCEEEEECH
Confidence 34667777777776654 4578899986
No 321
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=95.61 E-value=0.0073 Score=50.70 Aligned_cols=23 Identities=43% Similarity=0.541 Sum_probs=19.9
Q ss_pred EEEEccCCCcHHHHHHHHHcccc
Q 007817 199 IPIVGMAGAGKTMLAREVYNDRA 221 (588)
Q Consensus 199 v~I~G~gGiGKTtLA~~v~~~~~ 221 (588)
|.|+|++|+|||+||+.++.+..
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~l~ 23 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKDLL 23 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHHHH
Confidence 57999999999999999887653
No 322
>PRK14527 adenylate kinase; Provisional
Probab=95.60 E-value=0.016 Score=54.24 Aligned_cols=27 Identities=26% Similarity=0.324 Sum_probs=23.4
Q ss_pred CeEEEEEEccCCCcHHHHHHHHHcccc
Q 007817 195 NFCVIPIVGMAGAGKTMLAREVYNDRA 221 (588)
Q Consensus 195 ~~~vv~I~G~gGiGKTtLA~~v~~~~~ 221 (588)
...++.|+|++|+||||+|+.+++...
T Consensus 5 ~~~~i~i~G~pGsGKsT~a~~La~~~~ 31 (191)
T PRK14527 5 KNKVVIFLGPPGAGKGTQAERLAQELG 31 (191)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhC
Confidence 447899999999999999999987553
No 323
>PF00154 RecA: recA bacterial DNA recombination protein; InterPro: IPR013765 The recA gene product is a multifunctional enzyme that plays a role in homologous recombination, DNA repair and induction of the SOS response []. In homologous recombination, the protein functions as a DNA-dependent ATPase, promoting synapsis, heteroduplex formation and strand exchange between homologous DNAs []. RecA also acts as a protease cofactor that promotes autodigestion of the lexA product and phage repressors. The proteolytic inactivation of the lexA repressor by an activated form of recA may cause a derepression of the 20 or so genes involved in the SOS response, which regulates DNA repair, induced mutagenesis, delayed cell division and prophage induction in response to DNA damage []. RecA is a protein of about 350 amino-acid residues. Its sequence is very well conserved [, , ] among eubacterial species. It is also found in the chloroplast of plants []. RecA-like proteins are found in archaea and diverse eukaryotic organisms, like fission yeast, mouse or human. In the filament visualised by X-ray crystallography, beta-strand 3, the loop C-terminal to beta-strand 2, and alpha-helix D of the core domain form one surface that packs against alpha-helix A and beta-strand 0 (the N-terminal domain) of an adjacent monomer during polymerisation []. The core ATP-binding site domain is well conserved, with 14 invariant residues. It contains the nucleotide binding loop between beta-strand 1 and alpha-helix C. The Escherichia coli sequence GPESSGKT matches the consensus sequence of amino acids (G/A)XXXXGK(T/S) for the Walker A box (also referred to as the P-loop) found in a number of nucleoside triphosphate (NTP)-binding proteins. Another nucleotide binding motif, the Walker B box is found at beta-strand 4 in the RecA structure. The Walker B box is characterised by four hydrophobic amino acids followed by an acidic residue (usually aspartate). Nucleotide specificity and additional ATP binding interactions are contributed by the amino acid residues at beta-strand 2 and the loop C-terminal to that strand, all of which are greater than 90% conserved among bacterial RecA proteins.; GO: 0003697 single-stranded DNA binding, 0005524 ATP binding, 0006281 DNA repair; PDB: 2IN0_A 1MO3_A 3IFJ_A 2IN8_A 2IMZ_B 1G18_A 1MO4_A 3IGD_A 2L8L_A 2IN9_A ....
Probab=95.60 E-value=0.04 Score=55.46 Aligned_cols=84 Identities=20% Similarity=0.167 Sum_probs=51.6
Q ss_pred CeEEEEEEccCCCcHHHHHHHHHcccccccccccEEEEEEeCCcccHHHHHHHHHHHhcCCCC-----CCCCHHHHHHHH
Q 007817 195 NFCVIPIVGMAGAGKTMLAREVYNDRAVQNFKFDVKAWVSVSDDFDVLRISRALLESITSTNC-----DFKTLNEVQVKL 269 (588)
Q Consensus 195 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~il~~l~~~~~-----~~~~~~~l~~~l 269 (588)
.-+++-|+|+.|+||||||..+...... .-..++||+....++.. .++.++.... .+...++.....
T Consensus 52 ~G~ivEi~G~~ssGKttLaL~~ia~~q~---~g~~~a~ID~e~~ld~~-----~a~~lGvdl~rllv~~P~~~E~al~~~ 123 (322)
T PF00154_consen 52 RGRIVEIYGPESSGKTTLALHAIAEAQK---QGGICAFIDAEHALDPE-----YAESLGVDLDRLLVVQPDTGEQALWIA 123 (322)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHH---TT-EEEEEESSS---HH-----HHHHTT--GGGEEEEE-SSHHHHHHHH
T ss_pred cCceEEEeCCCCCchhhhHHHHHHhhhc---ccceeEEecCcccchhh-----HHHhcCccccceEEecCCcHHHHHHHH
Confidence 3469999999999999999988876533 33568899998876653 3344443221 234455555555
Q ss_pred HHHhc-CCceeEEecccc
Q 007817 270 RIIVD-GKKFLLVLDDVW 286 (588)
Q Consensus 270 ~~~l~-~k~~LLVlDdv~ 286 (588)
...++ +.--++|+|.|-
T Consensus 124 e~lirsg~~~lVVvDSv~ 141 (322)
T PF00154_consen 124 EQLIRSGAVDLVVVDSVA 141 (322)
T ss_dssp HHHHHTTSESEEEEE-CT
T ss_pred HHHhhcccccEEEEecCc
Confidence 55554 344588999873
No 324
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.59 E-value=1.9 Score=42.40 Aligned_cols=95 Identities=21% Similarity=0.254 Sum_probs=58.0
Q ss_pred ceeechhhHHHHHHHHhcCCC------CCCCCeEEEEEEccCCCcHHHHHHHHHcccccccccccEEEEEEeCCcccHHH
Q 007817 170 AVYGRDEDKARMLEMVLSDDP------TTDANFCVIPIVGMAGAGKTMLAREVYNDRAVQNFKFDVKAWVSVSDDFDVLR 243 (588)
Q Consensus 170 ~~vGR~~e~~~l~~~L~~~~~------~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~ 243 (588)
++-|-+..++.|.+.+.-+-. ......+-|.++|++|.|||.||++|+..... . + ++||..
T Consensus 134 DVAGLE~AKeALKEAVILPIKFPqlFtGkR~PwrgiLLyGPPGTGKSYLAKAVATEAnS-T-F------FSvSSS----- 200 (439)
T KOG0739|consen 134 DVAGLEGAKEALKEAVILPIKFPQLFTGKRKPWRGILLYGPPGTGKSYLAKAVATEANS-T-F------FSVSSS----- 200 (439)
T ss_pred hhccchhHHHHHHhheeecccchhhhcCCCCcceeEEEeCCCCCcHHHHHHHHHhhcCC-c-e------EEeehH-----
Confidence 356777777777666533221 12345788999999999999999999986542 1 3 344432
Q ss_pred HHHHHHHHhcCCCCCCCCHHHHHHHHHHHh-cCCceeEEecccc
Q 007817 244 ISRALLESITSTNCDFKTLNEVQVKLRIIV-DGKKFLLVLDDVW 286 (588)
Q Consensus 244 ~~~~il~~l~~~~~~~~~~~~l~~~l~~~l-~~k~~LLVlDdv~ 286 (588)
++.....+ ..+.+...|.+.- ++|+-+|.+|.+.
T Consensus 201 ---DLvSKWmG------ESEkLVknLFemARe~kPSIIFiDEiD 235 (439)
T KOG0739|consen 201 ---DLVSKWMG------ESEKLVKNLFEMARENKPSIIFIDEID 235 (439)
T ss_pred ---HHHHHHhc------cHHHHHHHHHHHHHhcCCcEEEeehhh
Confidence 12222111 1234444444443 4789999999985
No 325
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=95.58 E-value=0.022 Score=56.31 Aligned_cols=26 Identities=27% Similarity=0.303 Sum_probs=20.3
Q ss_pred EEEEEEccCCCcHHHHHHHHHccccc
Q 007817 197 CVIPIVGMAGAGKTMLAREVYNDRAV 222 (588)
Q Consensus 197 ~vv~I~G~gGiGKTtLA~~v~~~~~~ 222 (588)
+.|.|+|.+|+||||+|+.+......
T Consensus 2 pLiil~G~P~SGKTt~a~~L~~~~~~ 27 (270)
T PF08433_consen 2 PLIILCGLPCSGKTTRAKELKKYLEE 27 (270)
T ss_dssp -EEEEE--TTSSHHHHHHHHHHHHHH
T ss_pred EEEEEEcCCCCcHHHHHHHHHHHHHh
Confidence 47899999999999999999886554
No 326
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=95.57 E-value=0.12 Score=49.45 Aligned_cols=24 Identities=29% Similarity=0.405 Sum_probs=21.4
Q ss_pred EEEEEEccCCCcHHHHHHHHHccc
Q 007817 197 CVIPIVGMAGAGKTMLAREVYNDR 220 (588)
Q Consensus 197 ~vv~I~G~gGiGKTtLA~~v~~~~ 220 (588)
.+++|+|+.|.|||||++.+....
T Consensus 31 e~~~i~G~nGsGKSTLl~~l~G~~ 54 (221)
T cd03244 31 EKVGIVGRTGSGKSSLLLALFRLV 54 (221)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCC
Confidence 589999999999999999997653
No 327
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=95.57 E-value=0.036 Score=56.52 Aligned_cols=82 Identities=22% Similarity=0.239 Sum_probs=54.7
Q ss_pred eEEEEEEccCCCcHHHHHHHHHcccccccccccEEEEEEeCCcccHHHHHHHHHHHhcCCCC-----CCCCHHHHHHHHH
Q 007817 196 FCVIPIVGMAGAGKTMLAREVYNDRAVQNFKFDVKAWVSVSDDFDVLRISRALLESITSTNC-----DFKTLNEVQVKLR 270 (588)
Q Consensus 196 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~il~~l~~~~~-----~~~~~~~l~~~l~ 270 (588)
-.++.|-|-+|||||||..++..+...+ - .+++|+-.+...-.++ -+..++.... ...+.+.+...+.
T Consensus 93 Gs~iLIgGdPGIGKSTLLLQva~~lA~~---~-~vLYVsGEES~~Qikl---RA~RL~~~~~~l~l~aEt~~e~I~~~l~ 165 (456)
T COG1066 93 GSVILIGGDPGIGKSTLLLQVAARLAKR---G-KVLYVSGEESLQQIKL---RADRLGLPTNNLYLLAETNLEDIIAELE 165 (456)
T ss_pred ccEEEEccCCCCCHHHHHHHHHHHHHhc---C-cEEEEeCCcCHHHHHH---HHHHhCCCccceEEehhcCHHHHHHHHH
Confidence 3699999999999999999999876543 2 6778877665433222 2344543322 2345555544444
Q ss_pred HHhcCCceeEEeccccc
Q 007817 271 IIVDGKKFLLVLDDVWN 287 (588)
Q Consensus 271 ~~l~~k~~LLVlDdv~~ 287 (588)
+.++-|+|+|-++.
T Consensus 166 ---~~~p~lvVIDSIQT 179 (456)
T COG1066 166 ---QEKPDLVVIDSIQT 179 (456)
T ss_pred ---hcCCCEEEEeccce
Confidence 37889999999854
No 328
>TIGR03575 selen_PSTK_euk L-seryl-tRNA(Sec) kinase, eukaryotic. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents eukaryotic proteins with this activity.
Probab=95.57 E-value=0.044 Score=55.75 Aligned_cols=23 Identities=30% Similarity=0.455 Sum_probs=20.4
Q ss_pred EEEEccCCCcHHHHHHHHHcccc
Q 007817 199 IPIVGMAGAGKTMLAREVYNDRA 221 (588)
Q Consensus 199 v~I~G~gGiGKTtLA~~v~~~~~ 221 (588)
+.+.|++|+||||+++.+.+...
T Consensus 2 ~~l~Gl~GaGKST~~~~l~~~l~ 24 (340)
T TIGR03575 2 CVLCGLPAAGKSTLARSLSATLR 24 (340)
T ss_pred eEEECCCCCCHHHHHHHHHHHHH
Confidence 57899999999999999987764
No 329
>PRK03839 putative kinase; Provisional
Probab=95.56 E-value=0.0093 Score=55.28 Aligned_cols=24 Identities=29% Similarity=0.531 Sum_probs=21.3
Q ss_pred EEEEEccCCCcHHHHHHHHHcccc
Q 007817 198 VIPIVGMAGAGKTMLAREVYNDRA 221 (588)
Q Consensus 198 vv~I~G~gGiGKTtLA~~v~~~~~ 221 (588)
.|.|.|++|+||||+++.+++...
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~~~ 25 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEKLG 25 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 488999999999999999998653
No 330
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=95.56 E-value=0.12 Score=52.18 Aligned_cols=24 Identities=21% Similarity=0.326 Sum_probs=21.7
Q ss_pred EEEEEEccCCCcHHHHHHHHHccc
Q 007817 197 CVIPIVGMAGAGKTMLAREVYNDR 220 (588)
Q Consensus 197 ~vv~I~G~gGiGKTtLA~~v~~~~ 220 (588)
.+++|+|+.|.|||||.+.+....
T Consensus 29 ei~~l~G~NGaGKTTLl~~l~Gl~ 52 (301)
T TIGR03522 29 RIVGFLGPNGAGKSTTMKIITGYL 52 (301)
T ss_pred eEEEEECCCCCCHHHHHHHHhCCC
Confidence 589999999999999999998754
No 331
>PRK03846 adenylylsulfate kinase; Provisional
Probab=95.56 E-value=0.028 Score=53.02 Aligned_cols=26 Identities=23% Similarity=0.353 Sum_probs=23.3
Q ss_pred CeEEEEEEccCCCcHHHHHHHHHccc
Q 007817 195 NFCVIPIVGMAGAGKTMLAREVYNDR 220 (588)
Q Consensus 195 ~~~vv~I~G~gGiGKTtLA~~v~~~~ 220 (588)
+..+++|+|++|+||||||+.+....
T Consensus 23 ~~~~i~i~G~~GsGKSTla~~l~~~l 48 (198)
T PRK03846 23 KGVVLWFTGLSGSGKSTVAGALEEAL 48 (198)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 55799999999999999999998854
No 332
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=95.51 E-value=0.018 Score=50.84 Aligned_cols=39 Identities=26% Similarity=0.393 Sum_probs=28.7
Q ss_pred EEEEEEccCCCcHHHHHHHHHcccccccccccEEEEEEeCC
Q 007817 197 CVIPIVGMAGAGKTMLAREVYNDRAVQNFKFDVKAWVSVSD 237 (588)
Q Consensus 197 ~vv~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~wv~v~~ 237 (588)
++|.|+|..|+|||||++.+.+....++ +...+..+...
T Consensus 1 pvv~VvG~~~sGKTTl~~~Li~~l~~~g--~~v~~ik~~~~ 39 (140)
T PF03205_consen 1 PVVQVVGPKNSGKTTLIRKLINELKRRG--YRVAVIKHTDH 39 (140)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHHHHHTT----EEEEEE-ST
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHhHcC--CceEEEEEccC
Confidence 4899999999999999999999876553 55555565544
No 333
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.51 E-value=0.037 Score=49.92 Aligned_cols=118 Identities=18% Similarity=0.127 Sum_probs=61.9
Q ss_pred EEEEEEccCCCcHHHHHHHHHcccccccccccEEEEEEeCCcccHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhcCC
Q 007817 197 CVIPIVGMAGAGKTMLAREVYNDRAVQNFKFDVKAWVSVSDDFDVLRISRALLESITSTNCDFKTLNEVQVKLRIIVDGK 276 (588)
Q Consensus 197 ~vv~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~il~~l~~~~~~~~~~~~l~~~l~~~l~~k 276 (588)
.+++|+|..|.|||||.+.+...... ....+++.-....... .......+.... +....+...-.+...+...
T Consensus 26 ~~~~i~G~nGsGKStll~~l~g~~~~----~~G~i~~~~~~~~~~~--~~~~~~~i~~~~-qlS~G~~~r~~l~~~l~~~ 98 (157)
T cd00267 26 EIVALVGPNGSGKSTLLRAIAGLLKP----TSGEILIDGKDIAKLP--LEELRRRIGYVP-QLSGGQRQRVALARALLLN 98 (157)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCC----CccEEEECCEEcccCC--HHHHHhceEEEe-eCCHHHHHHHHHHHHHhcC
Confidence 58999999999999999999886532 3344444322111100 001111111111 1122233333455666667
Q ss_pred ceeEEeccccc-cChhHHHHhhcccCCC-CCCcEEEEeecchhhhhh
Q 007817 277 KFLLVLDDVWN-ENYNLWEILKAPFMAG-ARNSKIIVTTCHSNVASM 321 (588)
Q Consensus 277 ~~LLVlDdv~~-~~~~~~~~l~~~l~~~-~~gs~ilvTTR~~~v~~~ 321 (588)
+-++++|+.-. .+......+...+... ..+..++++|.+......
T Consensus 99 ~~i~ilDEp~~~lD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~ 145 (157)
T cd00267 99 PDLLLLDEPTSGLDPASRERLLELLRELAEEGRTVIIVTHDPELAEL 145 (157)
T ss_pred CCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHH
Confidence 88999998742 1222333333333221 125678888877666554
No 334
>PRK04328 hypothetical protein; Provisional
Probab=95.51 E-value=0.066 Score=52.45 Aligned_cols=42 Identities=14% Similarity=0.246 Sum_probs=31.7
Q ss_pred CeEEEEEEccCCCcHHHHHHHHHcccccccccccEEEEEEeCCcc
Q 007817 195 NFCVIPIVGMAGAGKTMLAREVYNDRAVQNFKFDVKAWVSVSDDF 239 (588)
Q Consensus 195 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~wv~v~~~~ 239 (588)
.-.++.|.|.+|+|||+||.++....-. .-...+|++....+
T Consensus 22 ~gs~ili~G~pGsGKT~l~~~fl~~~~~---~ge~~lyis~ee~~ 63 (249)
T PRK04328 22 ERNVVLLSGGPGTGKSIFSQQFLWNGLQ---MGEPGVYVALEEHP 63 (249)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHh---cCCcEEEEEeeCCH
Confidence 4579999999999999999987765322 23467888886643
No 335
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=95.50 E-value=0.1 Score=54.67 Aligned_cols=28 Identities=29% Similarity=0.311 Sum_probs=24.0
Q ss_pred CeEEEEEEccCCCcHHHHHHHHHccccc
Q 007817 195 NFCVIPIVGMAGAGKTMLAREVYNDRAV 222 (588)
Q Consensus 195 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~ 222 (588)
.+.+|.++|+.|+||||++..++.....
T Consensus 99 ~~~vi~lvG~~GvGKTTtaaKLA~~l~~ 126 (429)
T TIGR01425 99 KQNVIMFVGLQGSGKTTTCTKLAYYYQR 126 (429)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 4689999999999999999988876543
No 336
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=95.48 E-value=0.11 Score=50.71 Aligned_cols=23 Identities=30% Similarity=0.443 Sum_probs=21.4
Q ss_pred EEEEEEccCCCcHHHHHHHHHcc
Q 007817 197 CVIPIVGMAGAGKTMLAREVYND 219 (588)
Q Consensus 197 ~vv~I~G~gGiGKTtLA~~v~~~ 219 (588)
.+++|+|+.|.|||||++.++..
T Consensus 28 e~~~i~G~nGsGKSTLl~~l~Gl 50 (248)
T PRK09580 28 EVHAIMGPNGSGKSTLSATLAGR 50 (248)
T ss_pred CEEEEECCCCCCHHHHHHHHcCC
Confidence 58999999999999999999886
No 337
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=95.48 E-value=0.12 Score=47.88 Aligned_cols=25 Identities=32% Similarity=0.603 Sum_probs=22.2
Q ss_pred EEEEEEccCCCcHHHHHHHHHcccc
Q 007817 197 CVIPIVGMAGAGKTMLAREVYNDRA 221 (588)
Q Consensus 197 ~vv~I~G~gGiGKTtLA~~v~~~~~ 221 (588)
.+++|+|+.|.|||||.+.+.....
T Consensus 27 ~~~~i~G~nGsGKSTLl~~l~G~~~ 51 (182)
T cd03215 27 EIVGIAGLVGNGQTELAEALFGLRP 51 (182)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCC
Confidence 5899999999999999999987643
No 338
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=95.47 E-value=0.033 Score=57.76 Aligned_cols=54 Identities=20% Similarity=0.292 Sum_probs=38.8
Q ss_pred CceeechhhHHHHHHHHhcC--------CCCCCCCeEEEEEEccCCCcHHHHHHHHHccccc
Q 007817 169 RAVYGRDEDKARMLEMVLSD--------DPTTDANFCVIPIVGMAGAGKTMLAREVYNDRAV 222 (588)
Q Consensus 169 ~~~vGR~~e~~~l~~~L~~~--------~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~ 222 (588)
..++|.+..++.+..++... ..........+.++|++|+|||+||+.+......
T Consensus 15 ~~IiGQe~AkkalavAl~~~~~r~~l~~~~~~e~~~~~ILliGp~G~GKT~LAr~LAk~l~~ 76 (443)
T PRK05201 15 KYIIGQDDAKRAVAIALRNRWRRMQLPEELRDEVTPKNILMIGPTGVGKTEIARRLAKLANA 76 (443)
T ss_pred cccCCHHHHHHHHHHHHHHHHHHhcCCcccccccCCceEEEECCCCCCHHHHHHHHHHHhCC
Confidence 45789888888888777431 0000112467899999999999999999886543
No 339
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.45 E-value=0.11 Score=58.32 Aligned_cols=25 Identities=28% Similarity=0.340 Sum_probs=22.3
Q ss_pred eEEEEEEccCCCcHHHHHHHHHccc
Q 007817 196 FCVIPIVGMAGAGKTMLAREVYNDR 220 (588)
Q Consensus 196 ~~vv~I~G~gGiGKTtLA~~v~~~~ 220 (588)
..+++++|+.|+||||++.+++...
T Consensus 185 g~Vi~lVGpnGvGKTTTiaKLA~~~ 209 (767)
T PRK14723 185 GGVLALVGPTGVGKTTTTAKLAARC 209 (767)
T ss_pred CeEEEEECCCCCcHHHHHHHHHhhH
Confidence 4799999999999999999988765
No 340
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=95.45 E-value=0.12 Score=49.66 Aligned_cols=24 Identities=33% Similarity=0.372 Sum_probs=21.8
Q ss_pred EEEEEEccCCCcHHHHHHHHHccc
Q 007817 197 CVIPIVGMAGAGKTMLAREVYNDR 220 (588)
Q Consensus 197 ~vv~I~G~gGiGKTtLA~~v~~~~ 220 (588)
.+++|.|+.|+|||||++.+....
T Consensus 49 e~~~i~G~nGsGKSTLl~~l~G~~ 72 (224)
T cd03220 49 ERIGLIGRNGAGKSTLLRLLAGIY 72 (224)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 589999999999999999998754
No 341
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.45 E-value=0.081 Score=55.45 Aligned_cols=88 Identities=18% Similarity=0.257 Sum_probs=46.6
Q ss_pred CeEEEEEEccCCCcHHHHHHHHHcccccccccccEEEEEEeCC-cccHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHh
Q 007817 195 NFCVIPIVGMAGAGKTMLAREVYNDRAVQNFKFDVKAWVSVSD-DFDVLRISRALLESITSTNCDFKTLNEVQVKLRIIV 273 (588)
Q Consensus 195 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~wv~v~~-~~~~~~~~~~il~~l~~~~~~~~~~~~l~~~l~~~l 273 (588)
...+++++|+.|+||||++..+........ ....+..+.... .....+-+....+.++.+.....+..++...+.. +
T Consensus 190 ~g~vi~lvGpnG~GKTTtlakLA~~~~~~~-~~~~v~~i~~d~~rigalEQL~~~a~ilGvp~~~v~~~~dl~~al~~-l 267 (420)
T PRK14721 190 QGGVYALIGPTGVGKTTTTAKLAARAVIRH-GADKVALLTTDSYRIGGHEQLRIYGKLLGVSVRSIKDIADLQLMLHE-L 267 (420)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhc-CCCeEEEEecCCcchhHHHHHHHHHHHcCCceecCCCHHHHHHHHHH-h
Confidence 347999999999999999998876432211 123334443322 1222333444445554443333444444433332 3
Q ss_pred cCCceeEEeccc
Q 007817 274 DGKKFLLVLDDV 285 (588)
Q Consensus 274 ~~k~~LLVlDdv 285 (588)
.+ .-++++|-.
T Consensus 268 ~~-~d~VLIDTa 278 (420)
T PRK14721 268 RG-KHMVLIDTV 278 (420)
T ss_pred cC-CCEEEecCC
Confidence 33 345666765
No 342
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=95.45 E-value=0.055 Score=55.83 Aligned_cols=106 Identities=20% Similarity=0.175 Sum_probs=58.6
Q ss_pred CeEEEEEEccCCCcHHHHHHHHHcccccccccccEEEEEEeCCcccHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhc
Q 007817 195 NFCVIPIVGMAGAGKTMLAREVYNDRAVQNFKFDVKAWVSVSDDFDVLRISRALLESITSTNCDFKTLNEVQVKLRIIVD 274 (588)
Q Consensus 195 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~il~~l~~~~~~~~~~~~l~~~l~~~l~ 274 (588)
.++=+-|||..|.|||.|.-.+|+...++. . .......+..++-+.+.........+.. +.+.+.
T Consensus 61 ~~~GlYl~G~vG~GKT~Lmd~f~~~lp~~~-k----------~R~HFh~Fm~~vh~~l~~~~~~~~~l~~----va~~l~ 125 (362)
T PF03969_consen 61 PPKGLYLWGPVGRGKTMLMDLFYDSLPIKR-K----------RRVHFHEFMLDVHSRLHQLRGQDDPLPQ----VADELA 125 (362)
T ss_pred CCceEEEECCCCCchhHHHHHHHHhCCccc-c----------ccccccHHHHHHHHHHHHHhCCCccHHH----HHHHHH
Confidence 457788999999999999999999876532 1 0111223444444444332222333333 334445
Q ss_pred CCceeEEeccccccChhHHHHhhcccCC-CCCCcEEEEeecch
Q 007817 275 GKKFLLVLDDVWNENYNLWEILKAPFMA-GARNSKIIVTTCHS 316 (588)
Q Consensus 275 ~k~~LLVlDdv~~~~~~~~~~l~~~l~~-~~~gs~ilvTTR~~ 316 (588)
++..||.||.+.-.+...--.+...|.. ...|. |||+|.|.
T Consensus 126 ~~~~lLcfDEF~V~DiaDAmil~rLf~~l~~~gv-vlVaTSN~ 167 (362)
T PF03969_consen 126 KESRLLCFDEFQVTDIADAMILKRLFEALFKRGV-VLVATSNR 167 (362)
T ss_pred hcCCEEEEeeeeccchhHHHHHHHHHHHHHHCCC-EEEecCCC
Confidence 6677999999865544332222222222 13455 55555443
No 343
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=95.45 E-value=0.022 Score=49.54 Aligned_cols=43 Identities=19% Similarity=0.173 Sum_probs=30.4
Q ss_pred hhHHHHHHHHhcCCCCCCCCeEEEEEEccCCCcHHHHHHHHHccccc
Q 007817 176 EDKARMLEMVLSDDPTTDANFCVIPIVGMAGAGKTMLAREVYNDRAV 222 (588)
Q Consensus 176 ~e~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~ 222 (588)
++..++.+.|...- ..-.++.+.|.-|+|||||++.+++....
T Consensus 6 ~~t~~l~~~l~~~l----~~~~~i~l~G~lGaGKTtl~~~l~~~lg~ 48 (133)
T TIGR00150 6 KAMDKFGKAFAKPL----DFGTVVLLKGDLGAGKTTLVQGLLQGLGI 48 (133)
T ss_pred HHHHHHHHHHHHhC----CCCCEEEEEcCCCCCHHHHHHHHHHHcCC
Confidence 44455555554322 12358999999999999999999987543
No 344
>PRK08972 fliI flagellum-specific ATP synthase; Validated
Probab=95.44 E-value=0.057 Score=56.53 Aligned_cols=84 Identities=19% Similarity=0.215 Sum_probs=51.7
Q ss_pred EEEEEEccCCCcHHHHHHHHHcccccccccccEEEEEEeCCcc-cHHHHHHHHHHHhcCCCC-------CCCCHH-----
Q 007817 197 CVIPIVGMAGAGKTMLAREVYNDRAVQNFKFDVKAWVSVSDDF-DVLRISRALLESITSTNC-------DFKTLN----- 263 (588)
Q Consensus 197 ~vv~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~wv~v~~~~-~~~~~~~~il~~l~~~~~-------~~~~~~----- 263 (588)
..++|+|..|+|||||++.+++.. ..+.++.+-+++.. .+.++...++..-..... +.....
T Consensus 163 qrigI~G~sG~GKSTLL~~I~~~~-----~~dv~Vi~lIGER~rEv~efi~~~l~~~~l~rtvvv~atsd~p~~~R~~a~ 237 (444)
T PRK08972 163 QRMGLFAGSGVGKSVLLGMMTRGT-----TADVIVVGLVGERGREVKEFIEEILGEEGRARSVVVAAPADTSPLMRLKGC 237 (444)
T ss_pred CEEEEECCCCCChhHHHHHhccCC-----CCCEEEEEEEcCChHHHHHHHHHhhccCCcccEEEEEECCCCCHHHHHHHH
Confidence 579999999999999999998642 33566666666554 345566665443211110 111111
Q ss_pred HHHHHHHHHh--cCCceeEEeccc
Q 007817 264 EVQVKLRIIV--DGKKFLLVLDDV 285 (588)
Q Consensus 264 ~l~~~l~~~l--~~k~~LLVlDdv 285 (588)
.....+.+++ +|+.+||++||+
T Consensus 238 ~~A~tiAEyfrd~G~~VLl~~Dsl 261 (444)
T PRK08972 238 ETATTIAEYFRDQGLNVLLLMDSL 261 (444)
T ss_pred HHHHHHHHHHHHcCCCEEEEEcCh
Confidence 1122344454 689999999998
No 345
>COG4240 Predicted kinase [General function prediction only]
Probab=95.44 E-value=0.089 Score=49.30 Aligned_cols=83 Identities=17% Similarity=0.080 Sum_probs=56.3
Q ss_pred CCeEEEEEEccCCCcHHHHHHHHHcccccccccccEEEEEEeCCcccHHHHHHHHHHHhcC-----CCCCCCCHHHHHHH
Q 007817 194 ANFCVIPIVGMAGAGKTMLAREVYNDRAVQNFKFDVKAWVSVSDDFDVLRISRALLESITS-----TNCDFKTLNEVQVK 268 (588)
Q Consensus 194 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~il~~l~~-----~~~~~~~~~~l~~~ 268 (588)
+++-+++|.|+-|+||||++..+++....++ . ..+...++.+-+-...-...++++... ..++..+..-+...
T Consensus 48 grPli~gisGpQGSGKStls~~i~~~L~~kg-~-ert~~lSLDDlYlthadrl~La~q~npllq~RGlpGTHD~tlglnV 125 (300)
T COG4240 48 GRPLIVGISGPQGSGKSTLSALIVRLLAAKG-L-ERTATLSLDDLYLTHADRLRLARQVNPLLQTRGLPGTHDPTLGLNV 125 (300)
T ss_pred CCceEEEeecCCCCchhhHHHHHHHHHHHhc-c-cceEEeehhhhhcchHHHHHHHHhcCchhcccCCCCCCchHHHHHH
Confidence 4678999999999999999999999877654 2 456666655544334444455555321 22355677777777
Q ss_pred HHHHhcCCce
Q 007817 269 LRIIVDGKKF 278 (588)
Q Consensus 269 l~~~l~~k~~ 278 (588)
|..+.+++.-
T Consensus 126 Lnai~~g~~~ 135 (300)
T COG4240 126 LNAIARGGPT 135 (300)
T ss_pred HHHHhcCCCC
Confidence 8777777744
No 346
>COG1428 Deoxynucleoside kinases [Nucleotide transport and metabolism]
Probab=95.43 E-value=0.011 Score=54.83 Aligned_cols=27 Identities=41% Similarity=0.513 Sum_probs=24.0
Q ss_pred eEEEEEEccCCCcHHHHHHHHHccccc
Q 007817 196 FCVIPIVGMAGAGKTMLAREVYNDRAV 222 (588)
Q Consensus 196 ~~vv~I~G~gGiGKTtLA~~v~~~~~~ 222 (588)
..+|+|-||-|+||||||+.+.+....
T Consensus 4 ~~~IvI~G~IG~GKSTLa~~La~~l~~ 30 (216)
T COG1428 4 AMVIVIEGMIGAGKSTLAQALAEHLGF 30 (216)
T ss_pred ccEEEEecccccCHHHHHHHHHHHhCC
Confidence 468999999999999999999997653
No 347
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.41 E-value=0.085 Score=49.42 Aligned_cols=23 Identities=30% Similarity=0.466 Sum_probs=21.2
Q ss_pred EEEEEEccCCCcHHHHHHHHHcc
Q 007817 197 CVIPIVGMAGAGKTMLAREVYND 219 (588)
Q Consensus 197 ~vv~I~G~gGiGKTtLA~~v~~~ 219 (588)
.+++|+|+.|+|||||++.++..
T Consensus 34 e~~~l~G~nGsGKSTLl~~l~G~ 56 (192)
T cd03232 34 TLTALMGESGAGKTTLLDVLAGR 56 (192)
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 69999999999999999999863
No 348
>cd01135 V_A-ATPase_B V/A-type ATP synthase (non-catalytic) subunit B. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria. This subfamily consists of the non-catalytic beta subunit.
Probab=95.41 E-value=0.095 Score=51.42 Aligned_cols=88 Identities=17% Similarity=0.225 Sum_probs=55.4
Q ss_pred EEEEEEccCCCcHHHHHHHHHccccc--ccccccEEEEEEeCCcc-cHHHHHHHHHHHhcCCCC-------CCCCHHH--
Q 007817 197 CVIPIVGMAGAGKTMLAREVYNDRAV--QNFKFDVKAWVSVSDDF-DVLRISRALLESITSTNC-------DFKTLNE-- 264 (588)
Q Consensus 197 ~vv~I~G~gGiGKTtLA~~v~~~~~~--~~~~f~~~~wv~v~~~~-~~~~~~~~il~~l~~~~~-------~~~~~~~-- 264 (588)
+-++|.|-.|+|||+|+..+.++... ++ .-+.++++-+++.. ...++..++.+.-..... +......
T Consensus 70 QR~gIfgg~GvGKt~L~~~i~~~~~~~~~~-~~~v~V~~~IGeR~rev~e~~~~~~~~~~l~~tv~v~~t~~~~~~~r~~ 148 (276)
T cd01135 70 QKIPIFSGSGLPHNELAAQIARQAGVVGEE-ENFAVVFAAMGITMEDARFFKDDFEETGALERVVLFLNLANDPTIERII 148 (276)
T ss_pred CEEEeecCCCCChhHHHHHHHHhhhccccC-CCCEEEEEEeccccHHHHHHHHHhhhcCCcceEEEEEecCCCCHHHHHH
Confidence 57899999999999999998886541 12 35678888887654 456666666553211110 1111111
Q ss_pred ---HHHHHHHHh--c-CCceeEEeccc
Q 007817 265 ---VQVKLRIIV--D-GKKFLLVLDDV 285 (588)
Q Consensus 265 ---l~~~l~~~l--~-~k~~LLVlDdv 285 (588)
....+.+++ + ++++|+++||+
T Consensus 149 a~~~a~aiAEyfrd~~g~~VLl~~D~l 175 (276)
T cd01135 149 TPRMALTTAEYLAYEKGKHVLVILTDM 175 (276)
T ss_pred HHHHHHHHHHHHHhccCCeEEEEEcCh
Confidence 122345555 3 78999999998
No 349
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.38 E-value=0.2 Score=48.42 Aligned_cols=24 Identities=25% Similarity=0.361 Sum_probs=21.4
Q ss_pred EEEEEEccCCCcHHHHHHHHHccc
Q 007817 197 CVIPIVGMAGAGKTMLAREVYNDR 220 (588)
Q Consensus 197 ~vv~I~G~gGiGKTtLA~~v~~~~ 220 (588)
.+++|+|+.|.|||||++.++.-.
T Consensus 29 e~~~i~G~nGsGKSTLl~~l~Gl~ 52 (234)
T cd03251 29 ETVALVGPSGSGKSTLVNLIPRFY 52 (234)
T ss_pred CEEEEECCCCCCHHHHHHHHhccc
Confidence 589999999999999999997654
No 350
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=95.37 E-value=0.047 Score=59.55 Aligned_cols=134 Identities=12% Similarity=0.027 Sum_probs=70.3
Q ss_pred CceeechhhHHHHHHHHhcCCCCCCCCeEEEEEEccCCCcHHHHHHHHHcccccccccccEEEEEEeCCcccHHHHHHHH
Q 007817 169 RAVYGRDEDKARMLEMVLSDDPTTDANFCVIPIVGMAGAGKTMLAREVYNDRAVQNFKFDVKAWVSVSDDFDVLRISRAL 248 (588)
Q Consensus 169 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i 248 (588)
..++|....+.++.+.+..-.. .-.-|.|+|..|+||+.||+.+.+..... -...+.+++..-.+ +.+..
T Consensus 204 ~~~ig~s~~~~~~~~~~~~~A~----~~~pvlI~GE~GtGK~~lA~aiH~~s~r~---~~pfv~inca~~~~--~~~e~- 273 (520)
T PRK10820 204 SQIVAVSPKMRQVVEQARKLAM----LDAPLLITGDTGTGKDLLAYACHLRSPRG---KKPFLALNCASIPD--DVVES- 273 (520)
T ss_pred cceeECCHHHHHHHHHHHHHhC----CCCCEEEECCCCccHHHHHHHHHHhCCCC---CCCeEEeccccCCH--HHHHH-
Confidence 4689998888877776643221 12347899999999999999986543211 12234455554321 22211
Q ss_pred HHHhcCCCCCC-CCHHHHHHHHHHHhcCCceeEEeccccccChhHHHHhhcccCCCC-----------CCcEEEEeecch
Q 007817 249 LESITSTNCDF-KTLNEVQVKLRIIVDGKKFLLVLDDVWNENYNLWEILKAPFMAGA-----------RNSKIIVTTCHS 316 (588)
Q Consensus 249 l~~l~~~~~~~-~~~~~l~~~l~~~l~~k~~LLVlDdv~~~~~~~~~~l~~~l~~~~-----------~gs~ilvTTR~~ 316 (588)
.+.+...+. ....+...-+-+ ....=.|+||+++..+......+...+..+. ...+||.||...
T Consensus 274 --elFG~~~~~~~~~~~~~~g~~e--~a~~GtL~LdeI~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~vRiI~st~~~ 349 (520)
T PRK10820 274 --ELFGHAPGAYPNALEGKKGFFE--QANGGSVLLDEIGEMSPRMQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQKN 349 (520)
T ss_pred --HhcCCCCCCcCCcccCCCChhh--hcCCCEEEEeChhhCCHHHHHHHHHHHhcCCcccCCCCcceeeeeEEEEecCCC
Confidence 222211110 000000000000 1223457899998777666666665554321 134788877554
No 351
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.37 E-value=0.14 Score=49.32 Aligned_cols=24 Identities=38% Similarity=0.412 Sum_probs=21.6
Q ss_pred EEEEEEccCCCcHHHHHHHHHccc
Q 007817 197 CVIPIVGMAGAGKTMLAREVYNDR 220 (588)
Q Consensus 197 ~vv~I~G~gGiGKTtLA~~v~~~~ 220 (588)
.+++|+|+.|.|||||.+.+....
T Consensus 30 ~~~~i~G~nGsGKSTLl~~l~G~~ 53 (229)
T cd03254 30 ETVAIVGPTGAGKTTLINLLMRFY 53 (229)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCc
Confidence 589999999999999999998654
No 352
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=95.34 E-value=0.12 Score=55.22 Aligned_cols=88 Identities=14% Similarity=0.161 Sum_probs=47.6
Q ss_pred eEEEEEEccCCCcHHHHHHHHHcccccccccccEEEEEEeCC-cccHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhc
Q 007817 196 FCVIPIVGMAGAGKTMLAREVYNDRAVQNFKFDVKAWVSVSD-DFDVLRISRALLESITSTNCDFKTLNEVQVKLRIIVD 274 (588)
Q Consensus 196 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~wv~v~~-~~~~~~~~~~il~~l~~~~~~~~~~~~l~~~l~~~l~ 274 (588)
..|++++|+.|+||||++.+++.....+. ....+..++... .....+-++...+.++.......+..+....+. .+.
T Consensus 256 g~Vi~LvGpnGvGKTTTiaKLA~~~~~~~-G~~kV~LI~~Dt~RigA~EQLr~~AeilGVpv~~~~~~~Dl~~aL~-~L~ 333 (484)
T PRK06995 256 GGVFALMGPTGVGKTTTTAKLAARCVMRH-GASKVALLTTDSYRIGGHEQLRIYGKILGVPVHAVKDAADLRLALS-ELR 333 (484)
T ss_pred CcEEEEECCCCccHHHHHHHHHHHHHHhc-CCCeEEEEeCCccchhHHHHHHHHHHHhCCCeeccCCchhHHHHHH-hcc
Confidence 37999999999999999999997653322 112344555432 122334444445554433322222222222222 233
Q ss_pred CCceeEEecccc
Q 007817 275 GKKFLLVLDDVW 286 (588)
Q Consensus 275 ~k~~LLVlDdv~ 286 (588)
++ -.+++|-.-
T Consensus 334 d~-d~VLIDTaG 344 (484)
T PRK06995 334 NK-HIVLIDTIG 344 (484)
T ss_pred CC-CeEEeCCCC
Confidence 43 477778763
No 353
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=95.32 E-value=0.15 Score=48.81 Aligned_cols=24 Identities=25% Similarity=0.364 Sum_probs=21.6
Q ss_pred EEEEEEccCCCcHHHHHHHHHccc
Q 007817 197 CVIPIVGMAGAGKTMLAREVYNDR 220 (588)
Q Consensus 197 ~vv~I~G~gGiGKTtLA~~v~~~~ 220 (588)
.+++|.|+.|.|||||++.+..-.
T Consensus 31 ~~~~i~G~nGsGKSTLl~~i~G~~ 54 (220)
T cd03245 31 EKVAIIGRVGSGKSTLLKLLAGLY 54 (220)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCc
Confidence 589999999999999999998653
No 354
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=95.32 E-value=0.26 Score=46.60 Aligned_cols=25 Identities=28% Similarity=0.492 Sum_probs=22.3
Q ss_pred EEEEEEccCCCcHHHHHHHHHcccc
Q 007817 197 CVIPIVGMAGAGKTMLAREVYNDRA 221 (588)
Q Consensus 197 ~vv~I~G~gGiGKTtLA~~v~~~~~ 221 (588)
.+++|.|+.|.|||||++.+..-..
T Consensus 32 ~~~~i~G~nG~GKSTLl~~i~G~~~ 56 (204)
T cd03250 32 ELVAIVGPVGSGKSSLLSALLGELE 56 (204)
T ss_pred CEEEEECCCCCCHHHHHHHHhCcCC
Confidence 5899999999999999999987643
No 355
>PHA00729 NTP-binding motif containing protein
Probab=95.30 E-value=0.017 Score=54.91 Aligned_cols=26 Identities=38% Similarity=0.487 Sum_probs=22.7
Q ss_pred CeEEEEEEccCCCcHHHHHHHHHccc
Q 007817 195 NFCVIPIVGMAGAGKTMLAREVYNDR 220 (588)
Q Consensus 195 ~~~vv~I~G~gGiGKTtLA~~v~~~~ 220 (588)
....+.|+|.+|+||||||..+.+..
T Consensus 16 ~f~nIlItG~pGvGKT~LA~aLa~~l 41 (226)
T PHA00729 16 GFVSAVIFGKQGSGKTTYALKVARDV 41 (226)
T ss_pred CeEEEEEECCCCCCHHHHHHHHHHHH
Confidence 45679999999999999999998854
No 356
>PRK00131 aroK shikimate kinase; Reviewed
Probab=95.30 E-value=0.014 Score=53.62 Aligned_cols=25 Identities=28% Similarity=0.373 Sum_probs=22.4
Q ss_pred eEEEEEEccCCCcHHHHHHHHHccc
Q 007817 196 FCVIPIVGMAGAGKTMLAREVYNDR 220 (588)
Q Consensus 196 ~~vv~I~G~gGiGKTtLA~~v~~~~ 220 (588)
...|.|+|++|+||||+|+.+.+..
T Consensus 4 ~~~i~l~G~~GsGKstla~~La~~l 28 (175)
T PRK00131 4 GPNIVLIGFMGAGKSTIGRLLAKRL 28 (175)
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHHh
Confidence 3589999999999999999999865
No 357
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=95.29 E-value=0.012 Score=66.72 Aligned_cols=24 Identities=25% Similarity=0.184 Sum_probs=21.2
Q ss_pred eEEEEEEccCCCcHHHHHHHHHcc
Q 007817 196 FCVIPIVGMAGAGKTMLAREVYND 219 (588)
Q Consensus 196 ~~vv~I~G~gGiGKTtLA~~v~~~ 219 (588)
..+++|+|+.|.|||||.+.+.-.
T Consensus 322 ~~~liItGpNg~GKSTlLK~i~~~ 345 (771)
T TIGR01069 322 KRVLAITGPNTGGKTVTLKTLGLL 345 (771)
T ss_pred ceEEEEECCCCCCchHHHHHHHHH
Confidence 478999999999999999888654
No 358
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=95.28 E-value=0.019 Score=54.31 Aligned_cols=119 Identities=13% Similarity=0.186 Sum_probs=59.9
Q ss_pred EEEEEEccCCCcHHHHHHHHHcccccccccccEEEEEEeCCcccHHHHHHHHHHHhcCCCCCCCC---HHHHHHHHHHHh
Q 007817 197 CVIPIVGMAGAGKTMLAREVYNDRAVQNFKFDVKAWVSVSDDFDVLRISRALLESITSTNCDFKT---LNEVQVKLRIIV 273 (588)
Q Consensus 197 ~vv~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~il~~l~~~~~~~~~---~~~l~~~l~~~l 273 (588)
.++.|.|+.|.||||+.+.+....-.. ..-++|++.. ....+...|...+......... ...-...+...+
T Consensus 30 ~~~~l~G~n~~GKstll~~i~~~~~la----~~G~~vpa~~--~~l~~~d~I~~~~~~~d~~~~~~S~fs~e~~~~~~il 103 (204)
T cd03282 30 RFHIITGPNMSGKSTYLKQIALLAIMA----QIGCFVPAEY--ATLPIFNRLLSRLSNDDSMERNLSTFASEMSETAYIL 103 (204)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHHH----HcCCCcchhh--cCccChhheeEecCCccccchhhhHHHHHHHHHHHHH
Confidence 689999999999999998886433111 1111222111 1112333333333322111111 111111222222
Q ss_pred --cCCceeEEecccccc-ChhH----HHHhhcccCCCCCCcEEEEeecchhhhhhcc
Q 007817 274 --DGKKFLLVLDDVWNE-NYNL----WEILKAPFMAGARNSKIIVTTCHSNVASMMG 323 (588)
Q Consensus 274 --~~k~~LLVlDdv~~~-~~~~----~~~l~~~l~~~~~gs~ilvTTR~~~v~~~~~ 323 (588)
..++-|+++|..-.. +..+ ...+...+.. .|+.+|++|.+.+.+..+.
T Consensus 104 ~~~~~~~lvllDE~~~gt~~~~~~~l~~~il~~l~~--~~~~~i~~TH~~~l~~~~~ 158 (204)
T cd03282 104 DYADGDSLVLIDELGRGTSSADGFAISLAILECLIK--KESTVFFATHFRDIAAILG 158 (204)
T ss_pred HhcCCCcEEEeccccCCCCHHHHHHHHHHHHHHHHh--cCCEEEEECChHHHHHHhh
Confidence 356889999997332 1111 1122222322 3788999999988877654
No 359
>PRK04040 adenylate kinase; Provisional
Probab=95.27 E-value=0.015 Score=54.29 Aligned_cols=24 Identities=25% Similarity=0.464 Sum_probs=22.0
Q ss_pred EEEEEEccCCCcHHHHHHHHHccc
Q 007817 197 CVIPIVGMAGAGKTMLAREVYNDR 220 (588)
Q Consensus 197 ~vv~I~G~gGiGKTtLA~~v~~~~ 220 (588)
.+|+|+|++|+||||+++.+.+..
T Consensus 3 ~~i~v~G~pG~GKtt~~~~l~~~l 26 (188)
T PRK04040 3 KVVVVTGVPGVGKTTVLNKALEKL 26 (188)
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHh
Confidence 689999999999999999998865
No 360
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=95.27 E-value=0.1 Score=51.26 Aligned_cols=24 Identities=33% Similarity=0.502 Sum_probs=21.8
Q ss_pred EEEEEEccCCCcHHHHHHHHHccc
Q 007817 197 CVIPIVGMAGAGKTMLAREVYNDR 220 (588)
Q Consensus 197 ~vv~I~G~gGiGKTtLA~~v~~~~ 220 (588)
.+++|+|+.|+|||||++.++...
T Consensus 31 e~~~I~G~NGsGKSTLl~~i~Gl~ 54 (251)
T PRK09544 31 KILTLLGPNGAGKSTLVRVVLGLV 54 (251)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC
Confidence 589999999999999999998754
No 361
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=95.25 E-value=0.11 Score=54.45 Aligned_cols=52 Identities=23% Similarity=0.323 Sum_probs=35.6
Q ss_pred CceeechhhHHHHHHHHh-------c--CCCCC---CCCeEEEEEEccCCCcHHHHHHHHHccc
Q 007817 169 RAVYGRDEDKARMLEMVL-------S--DDPTT---DANFCVIPIVGMAGAGKTMLAREVYNDR 220 (588)
Q Consensus 169 ~~~vGR~~e~~~l~~~L~-------~--~~~~~---~~~~~vv~I~G~gGiGKTtLA~~v~~~~ 220 (588)
..++|.++.++.+...+. . ..... ......+.|+|++|+|||+||+.+....
T Consensus 77 ~~ViGQe~A~~~l~~av~~h~~~~~~~~~~~~~~~~~~~~~~iLL~GP~GsGKT~lAraLA~~l 140 (413)
T TIGR00382 77 EYVIGQEQAKKVLSVAVYNHYKRLNFEKNKKSDNGVELSKSNILLIGPTGSGKTLLAQTLARIL 140 (413)
T ss_pred ceecCHHHHHHHHHHHHHHHHhhhccccccccccccccCCceEEEECCCCcCHHHHHHHHHHhc
Confidence 457899988888765551 1 00000 0113579999999999999999998754
No 362
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=95.23 E-value=0.018 Score=52.63 Aligned_cols=29 Identities=21% Similarity=0.354 Sum_probs=25.0
Q ss_pred CeEEEEEEccCCCcHHHHHHHHHcccccc
Q 007817 195 NFCVIPIVGMAGAGKTMLAREVYNDRAVQ 223 (588)
Q Consensus 195 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 223 (588)
..++++|+|..|+|||||++.+......+
T Consensus 5 ~~~ii~ivG~sgsGKTTLi~~li~~l~~~ 33 (173)
T PRK10751 5 MIPLLAIAAWSGTGKTTLLKKLIPALCAR 33 (173)
T ss_pred CceEEEEECCCCChHHHHHHHHHHHHhhc
Confidence 56799999999999999999999876543
No 363
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=95.23 E-value=0.018 Score=55.29 Aligned_cols=63 Identities=16% Similarity=0.216 Sum_probs=40.1
Q ss_pred CCCeEEEEEEccCCCcHHHHHHHHHcccccccccccEEEEEE-------eCCcccHHHH--HHHHHHHhcCCC
Q 007817 193 DANFCVIPIVGMAGAGKTMLAREVYNDRAVQNFKFDVKAWVS-------VSDDFDVLRI--SRALLESITSTN 256 (588)
Q Consensus 193 ~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~wv~-------v~~~~~~~~~--~~~il~~l~~~~ 256 (588)
.+++.+|.++||+|+||||..+.++.+...+. ....++-.. ..-..++.+. +++..++.+..+
T Consensus 16 ~~~p~~ilVvGMAGSGKTTF~QrL~~hl~~~~-~ppYviNLDPAv~~vpy~aniDIRDtVkYkEvMkqY~LGP 87 (366)
T KOG1532|consen 16 IQRPVIILVVGMAGSGKTTFMQRLNSHLHAKK-TPPYVINLDPAVRNVPYPANIDIRDTVKYKEVMKQYQLGP 87 (366)
T ss_pred ccCCcEEEEEecCCCCchhHHHHHHHHHhhcc-CCCeEEeCCHHHhcCCCccCCchhhhhhHHHHHHHhCCCC
Confidence 35677899999999999999999998876654 333333221 1222344433 456677665443
No 364
>PRK00625 shikimate kinase; Provisional
Probab=95.23 E-value=0.014 Score=53.70 Aligned_cols=24 Identities=21% Similarity=0.295 Sum_probs=21.0
Q ss_pred EEEEEccCCCcHHHHHHHHHcccc
Q 007817 198 VIPIVGMAGAGKTMLAREVYNDRA 221 (588)
Q Consensus 198 vv~I~G~gGiGKTtLA~~v~~~~~ 221 (588)
.|.|+|++|+||||+++.+.+...
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~~l~ 25 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAKFLS 25 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 478999999999999999988643
No 365
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=95.22 E-value=0.015 Score=53.81 Aligned_cols=24 Identities=33% Similarity=0.360 Sum_probs=21.4
Q ss_pred EEEEEEccCCCcHHHHHHHHHccc
Q 007817 197 CVIPIVGMAGAGKTMLAREVYNDR 220 (588)
Q Consensus 197 ~vv~I~G~gGiGKTtLA~~v~~~~ 220 (588)
.+++|+|++|+|||||++.+....
T Consensus 2 ~~~~i~G~sGsGKttl~~~l~~~~ 25 (179)
T TIGR02322 2 RLIYVVGPSGAGKDTLLDYARARL 25 (179)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc
Confidence 478999999999999999998764
No 366
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=95.21 E-value=0.012 Score=55.37 Aligned_cols=23 Identities=39% Similarity=0.629 Sum_probs=20.6
Q ss_pred EEEEEccCCCcHHHHHHHHHccc
Q 007817 198 VIPIVGMAGAGKTMLAREVYNDR 220 (588)
Q Consensus 198 vv~I~G~gGiGKTtLA~~v~~~~ 220 (588)
+|+|.|++|+|||||++.+....
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~l 23 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQL 23 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999998754
No 367
>PRK00279 adk adenylate kinase; Reviewed
Probab=95.20 E-value=0.031 Score=53.43 Aligned_cols=23 Identities=26% Similarity=0.356 Sum_probs=20.2
Q ss_pred EEEEEccCCCcHHHHHHHHHccc
Q 007817 198 VIPIVGMAGAGKTMLAREVYNDR 220 (588)
Q Consensus 198 vv~I~G~gGiGKTtLA~~v~~~~ 220 (588)
.|.|+|++|+||||+|+.++...
T Consensus 2 ~I~v~G~pGsGKsT~a~~la~~~ 24 (215)
T PRK00279 2 RLILLGPPGAGKGTQAKFIAEKY 24 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999998743
No 368
>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
Probab=95.19 E-value=0.026 Score=50.76 Aligned_cols=30 Identities=23% Similarity=0.356 Sum_probs=26.1
Q ss_pred CeEEEEEEccCCCcHHHHHHHHHccccccc
Q 007817 195 NFCVIPIVGMAGAGKTMLAREVYNDRAVQN 224 (588)
Q Consensus 195 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~ 224 (588)
+..+|.+.|.+|+||||||..+.......+
T Consensus 22 ~~~viW~TGLSGsGKSTiA~ale~~L~~~G 51 (197)
T COG0529 22 KGAVIWFTGLSGSGKSTIANALEEKLFAKG 51 (197)
T ss_pred CCeEEEeecCCCCCHHHHHHHHHHHHHHcC
Confidence 558999999999999999999998776544
No 369
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.19 E-value=0.43 Score=51.69 Aligned_cols=155 Identities=16% Similarity=0.145 Sum_probs=80.1
Q ss_pred echhhHHHHHHHHhcCCC-------CCCCCeEEEEEEccCCCcHHHHHHHHHcccccccccccEEEEEEeCCcccHHHHH
Q 007817 173 GRDEDKARMLEMVLSDDP-------TTDANFCVIPIVGMAGAGKTMLAREVYNDRAVQNFKFDVKAWVSVSDDFDVLRIS 245 (588)
Q Consensus 173 GR~~e~~~l~~~L~~~~~-------~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~ 245 (588)
|-++-+.+|.+.+.-+.. -+-..++-|..+|++|.|||++|+.+++.... .| +.+..+
T Consensus 438 GlE~lK~elq~~V~~p~~~pe~F~r~Gi~ppkGVLlyGPPGC~KT~lAkalAne~~~---nF-----lsvkgp------- 502 (693)
T KOG0730|consen 438 GLEELKRELQQAVEWPLKHPEKFARFGISPPKGVLLYGPPGCGKTLLAKALANEAGM---NF-----LSVKGP------- 502 (693)
T ss_pred CHHHHHHHHHHHHhhhhhchHHHHHhcCCCCceEEEECCCCcchHHHHHHHhhhhcC---Ce-----eeccCH-------
Confidence 456555555544432211 02245678899999999999999999986543 33 233221
Q ss_pred HHHHHHhcCCCCCCCCHHHHHHHHHHHhcCCceeEEeccccccC-----------hhHHHHhhcccCCCC--CCcEEEEe
Q 007817 246 RALLESITSTNCDFKTLNEVQVKLRIIVDGKKFLLVLDDVWNEN-----------YNLWEILKAPFMAGA--RNSKIIVT 312 (588)
Q Consensus 246 ~~il~~l~~~~~~~~~~~~l~~~l~~~l~~k~~LLVlDdv~~~~-----------~~~~~~l~~~l~~~~--~gs~ilvT 312 (588)
+++....+ .+...+....++.=+--+.+|.||.++.-. .....+|+.-+.... ++.-||-.
T Consensus 503 -EL~sk~vG-----eSEr~ir~iF~kAR~~aP~IiFfDEiDsi~~~R~g~~~~v~~RVlsqLLtEmDG~e~~k~V~ViAA 576 (693)
T KOG0730|consen 503 -ELFSKYVG-----ESERAIREVFRKARQVAPCIIFFDEIDALAGSRGGSSSGVTDRVLSQLLTEMDGLEALKNVLVIAA 576 (693)
T ss_pred -HHHHHhcC-----chHHHHHHHHHHHhhcCCeEEehhhHHhHhhccCCCccchHHHHHHHHHHHcccccccCcEEEEec
Confidence 11111111 112222222222223456888888874311 112233333333222 22333333
Q ss_pred ecchhhhh-h-cc---ccceeeCCCCCHHHHHHHHHHhhcC
Q 007817 313 TCHSNVAS-M-MG---SVEHYNLKLLSDEYCWSVFVKHAFE 348 (588)
Q Consensus 313 TR~~~v~~-~-~~---~~~~~~l~~L~~~ea~~Lf~~~a~~ 348 (588)
|..++... . +. -+..+.++.-+.+.-.++|+.++-.
T Consensus 577 TNRpd~ID~ALlRPGRlD~iiyVplPD~~aR~~Ilk~~~kk 617 (693)
T KOG0730|consen 577 TNRPDMIDPALLRPGRLDRIIYVPLPDLEARLEILKQCAKK 617 (693)
T ss_pred cCChhhcCHHHcCCcccceeEeecCccHHHHHHHHHHHHhc
Confidence 43333222 1 22 3467888888888888999988743
No 370
>PRK08149 ATP synthase SpaL; Validated
Probab=95.19 E-value=0.1 Score=54.67 Aligned_cols=85 Identities=24% Similarity=0.325 Sum_probs=50.8
Q ss_pred eEEEEEEccCCCcHHHHHHHHHcccccccccccEEEEEEeCC-cccHHHHHHHHHHHhcCCCC-------CCCCHH----
Q 007817 196 FCVIPIVGMAGAGKTMLAREVYNDRAVQNFKFDVKAWVSVSD-DFDVLRISRALLESITSTNC-------DFKTLN---- 263 (588)
Q Consensus 196 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~wv~v~~-~~~~~~~~~~il~~l~~~~~-------~~~~~~---- 263 (588)
-..++|+|..|+|||||+..+++... .+.++...+.. ..++.++..+.+........ +.....
T Consensus 151 Gq~i~I~G~sG~GKTTLl~~i~~~~~-----~dv~v~g~Ig~rg~ev~e~~~~~l~~~~~~~~~vV~~~sd~p~~~r~~a 225 (428)
T PRK08149 151 GQRMGIFASAGCGKTSLMNMLIEHSE-----ADVFVIGLIGERGREVTEFVESLRASSRREKCVLVYATSDFSSVDRCNA 225 (428)
T ss_pred CCEEEEECCCCCChhHHHHHHhcCCC-----CCeEEEEEEeeCCccHHHHHHHHhhcccccceEEEEECCCCCHHHHHhH
Confidence 35889999999999999999987532 33434444433 33455666666654321111 111111
Q ss_pred -HHHHHHHHHh--cCCceeEEeccc
Q 007817 264 -EVQVKLRIIV--DGKKFLLVLDDV 285 (588)
Q Consensus 264 -~l~~~l~~~l--~~k~~LLVlDdv 285 (588)
.....+.+++ +++.+||++||+
T Consensus 226 ~~~a~tiAE~fr~~G~~Vll~~Dsl 250 (428)
T PRK08149 226 ALVATTVAEYFRDQGKRVVLFIDSM 250 (428)
T ss_pred HHHHHHHHHHHHHcCCCEEEEccch
Confidence 1222344444 589999999998
No 371
>PRK00889 adenylylsulfate kinase; Provisional
Probab=95.18 E-value=0.019 Score=52.94 Aligned_cols=27 Identities=30% Similarity=0.415 Sum_probs=23.6
Q ss_pred CeEEEEEEccCCCcHHHHHHHHHcccc
Q 007817 195 NFCVIPIVGMAGAGKTMLAREVYNDRA 221 (588)
Q Consensus 195 ~~~vv~I~G~gGiGKTtLA~~v~~~~~ 221 (588)
...+++|+|++|+||||+|+.+.....
T Consensus 3 ~g~~i~~~G~~GsGKST~a~~la~~l~ 29 (175)
T PRK00889 3 RGVTVWFTGLSGAGKTTIARALAEKLR 29 (175)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 346999999999999999999998654
No 372
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=95.16 E-value=0.062 Score=58.33 Aligned_cols=134 Identities=12% Similarity=0.060 Sum_probs=71.9
Q ss_pred CceeechhhHHHHHHHHhcCCCCCCCCeEEEEEEccCCCcHHHHHHHHHcccccccccccEEEEEEeCCcccHHHHHHHH
Q 007817 169 RAVYGRDEDKARMLEMVLSDDPTTDANFCVIPIVGMAGAGKTMLAREVYNDRAVQNFKFDVKAWVSVSDDFDVLRISRAL 248 (588)
Q Consensus 169 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i 248 (588)
..++|....+.++.+.+..-.. ...-|.|.|..|+||+.+|+.+++...... ...+-|++..-. ...+.
T Consensus 212 ~~iiG~S~~m~~~~~~i~~~A~----~~~pVLI~GE~GTGKe~lA~~IH~~S~r~~---~pfv~inC~~l~--e~lle-- 280 (526)
T TIGR02329 212 DDLLGASAPMEQVRALVRLYAR----SDATVLILGESGTGKELVAQAIHQLSGRRD---FPFVAINCGAIA--ESLLE-- 280 (526)
T ss_pred hheeeCCHHHHHHHHHHHHHhC----CCCcEEEECCCCcCHHHHHHHHHHhcCcCC---CCEEEeccccCC--hhHHH--
Confidence 3589999888888887754321 235788999999999999999987542221 122234444322 12211
Q ss_pred HHHhcCCCCCCCCHHH--HHHHHHHHhcCCceeEEeccccccChhHHHHhhcccCCCC-----------CCcEEEEeecc
Q 007817 249 LESITSTNCDFKTLNE--VQVKLRIIVDGKKFLLVLDDVWNENYNLWEILKAPFMAGA-----------RNSKIIVTTCH 315 (588)
Q Consensus 249 l~~l~~~~~~~~~~~~--l~~~l~~~l~~k~~LLVlDdv~~~~~~~~~~l~~~l~~~~-----------~gs~ilvTTR~ 315 (588)
..+.+...+.-+... ...-+.+ ....=.|+||++...+......|...+.... ...|||.||..
T Consensus 281 -seLFG~~~gaftga~~~~~~Gl~e--~A~gGTLfLdeI~~Lp~~~Q~~Ll~~L~~~~~~r~g~~~~~~~dvRiIaat~~ 357 (526)
T TIGR02329 281 -AELFGYEEGAFTGARRGGRTGLIE--AAHRGTLFLDEIGEMPLPLQTRLLRVLEEREVVRVGGTEPVPVDVRVVAATHC 357 (526)
T ss_pred -HHhcCCcccccccccccccccchh--hcCCceEEecChHhCCHHHHHHHHHHHhcCcEEecCCCceeeecceEEeccCC
Confidence 222222111000000 0000000 1223458999998777666666666554321 12378887754
Q ss_pred h
Q 007817 316 S 316 (588)
Q Consensus 316 ~ 316 (588)
.
T Consensus 358 ~ 358 (526)
T TIGR02329 358 A 358 (526)
T ss_pred C
Confidence 3
No 373
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=95.13 E-value=0.066 Score=50.09 Aligned_cols=22 Identities=27% Similarity=0.415 Sum_probs=19.9
Q ss_pred EEEEccCCCcHHHHHHHHHccc
Q 007817 199 IPIVGMAGAGKTMLAREVYNDR 220 (588)
Q Consensus 199 v~I~G~gGiGKTtLA~~v~~~~ 220 (588)
|.|.|++|+||||+|+.+....
T Consensus 2 I~i~G~pGsGKst~a~~La~~~ 23 (194)
T cd01428 2 ILLLGPPGSGKGTQAERLAKKY 23 (194)
T ss_pred EEEECCCCCCHHHHHHHHHHHc
Confidence 7899999999999999998853
No 374
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=95.13 E-value=0.13 Score=50.01 Aligned_cols=26 Identities=23% Similarity=0.216 Sum_probs=22.6
Q ss_pred eEEEEEEccCCCcHHHHHHHHHcccc
Q 007817 196 FCVIPIVGMAGAGKTMLAREVYNDRA 221 (588)
Q Consensus 196 ~~vv~I~G~gGiGKTtLA~~v~~~~~ 221 (588)
-.+++|+|+.|+|||||.+.++.-..
T Consensus 28 G~i~~iiGpNG~GKSTLLk~l~g~l~ 53 (258)
T COG1120 28 GEITGILGPNGSGKSTLLKCLAGLLK 53 (258)
T ss_pred CcEEEEECCCCCCHHHHHHHHhccCC
Confidence 36999999999999999999987543
No 375
>PRK12597 F0F1 ATP synthase subunit beta; Provisional
Probab=95.13 E-value=0.068 Score=56.58 Aligned_cols=88 Identities=17% Similarity=0.166 Sum_probs=56.3
Q ss_pred eEEEEEEccCCCcHHHHHHHHHcccccccccccEEEEEEeCCcc-cHHHHHHHHHHHhcCCCC-------CCCCHH----
Q 007817 196 FCVIPIVGMAGAGKTMLAREVYNDRAVQNFKFDVKAWVSVSDDF-DVLRISRALLESITSTNC-------DFKTLN---- 263 (588)
Q Consensus 196 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~wv~v~~~~-~~~~~~~~il~~l~~~~~-------~~~~~~---- 263 (588)
-.-++|.|.+|+|||||+..+.++.... +-+.++++-+++.. .+.++...+...-..... +.....
T Consensus 143 GQR~gIfa~~G~GKt~Ll~~~~~~~~~~--~~dv~V~~liGER~rEv~ef~~~~~~~~~l~rsvvv~atsd~~~~~R~~a 220 (461)
T PRK12597 143 GGKTGLFGGAGVGKTVLMMELIFNISKQ--HSGSSVFAGVGERSREGHELYHEMKESGVLDKTVMVYGQMNEPPGARMRV 220 (461)
T ss_pred CCEEEeecCCCCChhHHHHHHHHHHHhh--CCCEEEEEcCCcchHHHHHHHHHHHhcCCcceeEEEecCCCCCHHHHHHH
Confidence 3578999999999999999988866432 46788888776543 455666666543211110 111111
Q ss_pred -HHHHHHHHHh---cCCceeEEeccc
Q 007817 264 -EVQVKLRIIV---DGKKFLLVLDDV 285 (588)
Q Consensus 264 -~l~~~l~~~l---~~k~~LLVlDdv 285 (588)
.....+.+++ +++.+||++||+
T Consensus 221 ~~~a~tiAEyfrd~~G~~VLl~~Dsl 246 (461)
T PRK12597 221 VLTGLTIAEYLRDEEKEDVLLFIDNI 246 (461)
T ss_pred HHHHHHHHHHHHHhcCCceEEEeccc
Confidence 1222355555 389999999999
No 376
>PRK11823 DNA repair protein RadA; Provisional
Probab=95.12 E-value=0.13 Score=54.93 Aligned_cols=83 Identities=22% Similarity=0.183 Sum_probs=51.4
Q ss_pred CeEEEEEEccCCCcHHHHHHHHHcccccccccccEEEEEEeCCcccHHHHHHHHHHHhcCCCC-----CCCCHHHHHHHH
Q 007817 195 NFCVIPIVGMAGAGKTMLAREVYNDRAVQNFKFDVKAWVSVSDDFDVLRISRALLESITSTNC-----DFKTLNEVQVKL 269 (588)
Q Consensus 195 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~il~~l~~~~~-----~~~~~~~l~~~l 269 (588)
.-.++.|.|.+|+|||||+.+++..... .-..++|++..+.+. .+.. -++.++.... ...+.+.+...+
T Consensus 79 ~Gs~~lI~G~pG~GKTtL~lq~a~~~a~---~g~~vlYvs~Ees~~--qi~~-ra~rlg~~~~~l~~~~e~~l~~i~~~i 152 (446)
T PRK11823 79 PGSVVLIGGDPGIGKSTLLLQVAARLAA---AGGKVLYVSGEESAS--QIKL-RAERLGLPSDNLYLLAETNLEAILATI 152 (446)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHh---cCCeEEEEEccccHH--HHHH-HHHHcCCChhcEEEeCCCCHHHHHHHH
Confidence 3469999999999999999999886542 223578888765432 2222 2344443211 123444444444
Q ss_pred HHHhcCCceeEEecccc
Q 007817 270 RIIVDGKKFLLVLDDVW 286 (588)
Q Consensus 270 ~~~l~~k~~LLVlDdv~ 286 (588)
. +.+.-++|+|.+.
T Consensus 153 ~---~~~~~lVVIDSIq 166 (446)
T PRK11823 153 E---EEKPDLVVIDSIQ 166 (446)
T ss_pred H---hhCCCEEEEechh
Confidence 3 2466799999974
No 377
>PRK15453 phosphoribulokinase; Provisional
Probab=95.11 E-value=0.11 Score=50.97 Aligned_cols=78 Identities=17% Similarity=0.130 Sum_probs=43.7
Q ss_pred CeEEEEEEccCCCcHHHHHHHHHcccccccccccEEEEEEeCCcc--cHHHHHHHHH--HHhc--CCC--CCCCCHHHHH
Q 007817 195 NFCVIPIVGMAGAGKTMLAREVYNDRAVQNFKFDVKAWVSVSDDF--DVLRISRALL--ESIT--STN--CDFKTLNEVQ 266 (588)
Q Consensus 195 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~wv~v~~~~--~~~~~~~~il--~~l~--~~~--~~~~~~~~l~ 266 (588)
+..+|+|.|.+|+||||+|+.+.+.....+ .....++...-. +....-..+. +.-+ -.. ++..+.+.+.
T Consensus 4 k~piI~ItG~SGsGKTTva~~l~~if~~~~---~~~~vi~~D~yh~ydr~~~~~~~~~~~r~g~nfdhf~PdAnd~dlL~ 80 (290)
T PRK15453 4 KHPIIAVTGSSGAGTTTVKRAFEKIFRREN---INAAVVEGDSFHRYTRPEMKAAIAKARAAGRHFSHFGPEANLFDELE 80 (290)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHhhcC---CCeEEEecccccccChhhHhhhhHHHHhcCCCCCCCCCCcccHHHHH
Confidence 457999999999999999999986443211 113333332211 2222222111 1111 112 4566777777
Q ss_pred HHHHHHhcC
Q 007817 267 VKLRIIVDG 275 (588)
Q Consensus 267 ~~l~~~l~~ 275 (588)
..++.+.++
T Consensus 81 ~~l~~l~~~ 89 (290)
T PRK15453 81 QLFREYGET 89 (290)
T ss_pred HHHHHHhcC
Confidence 777776654
No 378
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=95.10 E-value=0.015 Score=52.10 Aligned_cols=22 Identities=23% Similarity=0.650 Sum_probs=19.8
Q ss_pred EEEEEccCCCcHHHHHHHHHcc
Q 007817 198 VIPIVGMAGAGKTMLAREVYND 219 (588)
Q Consensus 198 vv~I~G~gGiGKTtLA~~v~~~ 219 (588)
++.|.|++|+||||+|+.+.+.
T Consensus 1 li~l~G~~GsGKST~a~~l~~~ 22 (150)
T cd02021 1 IIVVMGVSGSGKSTVGKALAER 22 (150)
T ss_pred CEEEEcCCCCCHHHHHHHHHhh
Confidence 4789999999999999999875
No 379
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=95.10 E-value=0.19 Score=55.84 Aligned_cols=26 Identities=19% Similarity=0.270 Sum_probs=22.5
Q ss_pred eEEEEEEccCCCcHHHHHHHHHcccc
Q 007817 196 FCVIPIVGMAGAGKTMLAREVYNDRA 221 (588)
Q Consensus 196 ~~vv~I~G~gGiGKTtLA~~v~~~~~ 221 (588)
-..++|+|+.|.|||||++.+.....
T Consensus 366 G~~~aivG~sGsGKSTL~~ll~g~~~ 391 (574)
T PRK11160 366 GEKVALLGRTGCGKSTLLQLLTRAWD 391 (574)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 36899999999999999999987543
No 380
>PF13479 AAA_24: AAA domain
Probab=95.09 E-value=0.076 Score=50.68 Aligned_cols=20 Identities=45% Similarity=0.559 Sum_probs=17.8
Q ss_pred EEEEEEccCCCcHHHHHHHH
Q 007817 197 CVIPIVGMAGAGKTMLAREV 216 (588)
Q Consensus 197 ~vv~I~G~gGiGKTtLA~~v 216 (588)
-.+.|+|.+|+||||+|..+
T Consensus 4 ~~~lIyG~~G~GKTt~a~~~ 23 (213)
T PF13479_consen 4 IKILIYGPPGSGKTTLAASL 23 (213)
T ss_pred eEEEEECCCCCCHHHHHHhC
Confidence 56889999999999999766
No 381
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=95.07 E-value=0.13 Score=56.59 Aligned_cols=26 Identities=23% Similarity=0.192 Sum_probs=22.5
Q ss_pred eEEEEEEccCCCcHHHHHHHHHcccc
Q 007817 196 FCVIPIVGMAGAGKTMLAREVYNDRA 221 (588)
Q Consensus 196 ~~vv~I~G~gGiGKTtLA~~v~~~~~ 221 (588)
-..++|+|+.|+|||||++.+..-..
T Consensus 361 G~~vaIvG~SGsGKSTLl~lL~g~~~ 386 (529)
T TIGR02868 361 GERVAILGPSGSGKSTLLMLLTGLLD 386 (529)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 36899999999999999999976543
No 382
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=95.06 E-value=0.19 Score=48.52 Aligned_cols=41 Identities=17% Similarity=0.241 Sum_probs=30.6
Q ss_pred CeEEEEEEccCCCcHHHHHHHHHcccccccccccEEEEEEeCCc
Q 007817 195 NFCVIPIVGMAGAGKTMLAREVYNDRAVQNFKFDVKAWVSVSDD 238 (588)
Q Consensus 195 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~wv~v~~~ 238 (588)
.-.++.|.|.+|+||||||.++....-. .-..++|++....
T Consensus 19 ~G~~~~i~G~~G~GKT~l~~~~~~~~~~---~g~~~~~is~e~~ 59 (229)
T TIGR03881 19 RGFFVAVTGEPGTGKTIFCLHFAYKGLR---DGDPVIYVTTEES 59 (229)
T ss_pred CCeEEEEECCCCCChHHHHHHHHHHHHh---cCCeEEEEEccCC
Confidence 4479999999999999999987654322 2346788887554
No 383
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=95.04 E-value=0.017 Score=53.27 Aligned_cols=24 Identities=29% Similarity=0.357 Sum_probs=21.6
Q ss_pred EEEEEEccCCCcHHHHHHHHHccc
Q 007817 197 CVIPIVGMAGAGKTMLAREVYNDR 220 (588)
Q Consensus 197 ~vv~I~G~gGiGKTtLA~~v~~~~ 220 (588)
++|.+.|++|+||||+|+.+....
T Consensus 3 ~~i~l~G~~gsGKst~a~~l~~~~ 26 (175)
T cd00227 3 RIIILNGGSSAGKSSIARALQSVL 26 (175)
T ss_pred CEEEEECCCCCCHHHHHHHHHHhh
Confidence 489999999999999999998753
No 384
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=95.04 E-value=0.12 Score=50.86 Aligned_cols=100 Identities=10% Similarity=0.120 Sum_probs=53.3
Q ss_pred EEEEEEccCCCcHHHHHHHHHcccccccccccEEEEEEeCCcc-cHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhc-
Q 007817 197 CVIPIVGMAGAGKTMLAREVYNDRAVQNFKFDVKAWVSVSDDF-DVLRISRALLESITSTNCDFKTLNEVQVKLRIIVD- 274 (588)
Q Consensus 197 ~vv~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~wv~v~~~~-~~~~~~~~il~~l~~~~~~~~~~~~l~~~l~~~l~- 274 (588)
.+++++|.+|+||||++..+......++ ..+.+++..... ....-++...+.++.+.....+...+...+...-+
T Consensus 76 ~~i~~~G~~g~GKTtl~~~l~~~l~~~~---~~v~~i~~D~~ri~~~~ql~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~ 152 (270)
T PRK06731 76 QTIALIGPTGVGKTTTLAKMAWQFHGKK---KTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKEE 152 (270)
T ss_pred CEEEEECCCCCcHHHHHHHHHHHHHHcC---CeEEEEecCCCCHHHHHHHHHHhhhcCceEEecCCHHHHHHHHHHHHhc
Confidence 6999999999999999998877543221 234455554221 22222233333333222223344555544443322
Q ss_pred CCceeEEecccccc--ChhHHHHhhcc
Q 007817 275 GKKFLLVLDDVWNE--NYNLWEILKAP 299 (588)
Q Consensus 275 ~k~~LLVlDdv~~~--~~~~~~~l~~~ 299 (588)
++.=++++|..-.. +....+.+...
T Consensus 153 ~~~D~ViIDt~Gr~~~~~~~l~el~~~ 179 (270)
T PRK06731 153 ARVDYILIDTAGKNYRASETVEEMIET 179 (270)
T ss_pred CCCCEEEEECCCCCcCCHHHHHHHHHH
Confidence 24568889987443 22344444433
No 385
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=95.04 E-value=0.026 Score=51.47 Aligned_cols=24 Identities=29% Similarity=0.569 Sum_probs=22.0
Q ss_pred EEEEEEccCCCcHHHHHHHHHccc
Q 007817 197 CVIPIVGMAGAGKTMLAREVYNDR 220 (588)
Q Consensus 197 ~vv~I~G~gGiGKTtLA~~v~~~~ 220 (588)
.++.|.|++|+|||||++.++.+.
T Consensus 5 ~l~vlsgPSG~GKsTl~k~L~~~~ 28 (191)
T COG0194 5 LLIVLSGPSGVGKSTLVKALLEDD 28 (191)
T ss_pred eEEEEECCCCCCHHHHHHHHHhhc
Confidence 688999999999999999999854
No 386
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.04 E-value=0.15 Score=49.38 Aligned_cols=25 Identities=28% Similarity=0.393 Sum_probs=22.5
Q ss_pred EEEEEEccCCCcHHHHHHHHHcccc
Q 007817 197 CVIPIVGMAGAGKTMLAREVYNDRA 221 (588)
Q Consensus 197 ~vv~I~G~gGiGKTtLA~~v~~~~~ 221 (588)
.+++|+|..|.|||||.+.++....
T Consensus 27 e~~~i~G~nGsGKSTLl~~l~g~~~ 51 (232)
T cd03300 27 EFFTLLGPSGCGKTTLLRLIAGFET 51 (232)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCC
Confidence 5899999999999999999987654
No 387
>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair]
Probab=95.03 E-value=0.18 Score=57.17 Aligned_cols=131 Identities=14% Similarity=0.166 Sum_probs=76.2
Q ss_pred hhhHHHHHHHHhcCCCCCCCCeEEEEEEccCCCcHHHHHHHHHcccccccccccEEEEEEeCCcccHHHHHHHHHHHhcC
Q 007817 175 DEDKARMLEMVLSDDPTTDANFCVIPIVGMAGAGKTMLAREVYNDRAVQNFKFDVKAWVSVSDDFDVLRISRALLESITS 254 (588)
Q Consensus 175 ~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~il~~l~~ 254 (588)
...+.+|.+.+... .|+.|.|+.|+||||-.-+++.+..- .....+-+.=........+...+.++++.
T Consensus 52 ~~~~~~i~~ai~~~--------~vvii~getGsGKTTqlP~~lle~g~---~~~g~I~~tQPRRlAArsvA~RvAeel~~ 120 (845)
T COG1643 52 TAVRDEILKAIEQN--------QVVIIVGETGSGKTTQLPQFLLEEGL---GIAGKIGCTQPRRLAARSVAERVAEELGE 120 (845)
T ss_pred HHHHHHHHHHHHhC--------CEEEEeCCCCCChHHHHHHHHHhhhc---ccCCeEEecCchHHHHHHHHHHHHHHhCC
Confidence 46677888887543 69999999999999988777765421 11233333333445667888888888876
Q ss_pred CCCC----------C---------CCHHHHHHHHH-HHhcCCceeEEeccccccChhH---HHHhhcccCCCCCCcEEEE
Q 007817 255 TNCD----------F---------KTLNEVQVKLR-IIVDGKKFLLVLDDVWNENYNL---WEILKAPFMAGARNSKIIV 311 (588)
Q Consensus 255 ~~~~----------~---------~~~~~l~~~l~-~~l~~k~~LLVlDdv~~~~~~~---~~~l~~~l~~~~~gs~ilv 311 (588)
..++ . .+...+...++ ..+-.+=-.+|+|.+++.+.+. ...+...+......-||||
T Consensus 121 ~~G~~VGY~iRfe~~~s~~Trik~mTdGiLlrei~~D~~Ls~ys~vIiDEaHERSl~tDilLgllk~~~~~rr~DLKiIi 200 (845)
T COG1643 121 KLGETVGYSIRFESKVSPRTRIKVMTDGILLREIQNDPLLSGYSVVIIDEAHERSLNTDILLGLLKDLLARRRDDLKLII 200 (845)
T ss_pred CcCceeeEEEEeeccCCCCceeEEeccHHHHHHHhhCcccccCCEEEEcchhhhhHHHHHHHHHHHHHHhhcCCCceEEE
Confidence 5321 0 11122222222 2222344589999998654221 1222222222333589999
Q ss_pred eecch
Q 007817 312 TTCHS 316 (588)
Q Consensus 312 TTR~~ 316 (588)
+|=.-
T Consensus 201 mSATl 205 (845)
T COG1643 201 MSATL 205 (845)
T ss_pred Eeccc
Confidence 99554
No 388
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=95.02 E-value=0.15 Score=47.90 Aligned_cols=24 Identities=33% Similarity=0.509 Sum_probs=21.8
Q ss_pred EEEEEEccCCCcHHHHHHHHHccc
Q 007817 197 CVIPIVGMAGAGKTMLAREVYNDR 220 (588)
Q Consensus 197 ~vv~I~G~gGiGKTtLA~~v~~~~ 220 (588)
.+++|.|+.|.|||||.+.+..-.
T Consensus 36 e~~~l~G~nGsGKStLl~~i~Gl~ 59 (194)
T cd03213 36 ELTAIMGPSGAGKSTLLNALAGRR 59 (194)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC
Confidence 589999999999999999998754
No 389
>TIGR03498 FliI_clade3 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=95.02 E-value=0.11 Score=54.58 Aligned_cols=85 Identities=19% Similarity=0.136 Sum_probs=48.5
Q ss_pred EEEEEEccCCCcHHHHHHHHHcccccccccccEEEEEEeCCcccHHHHHHHHHHHhcCCCC-------CCCCHHH-----
Q 007817 197 CVIPIVGMAGAGKTMLAREVYNDRAVQNFKFDVKAWVSVSDDFDVLRISRALLESITSTNC-------DFKTLNE----- 264 (588)
Q Consensus 197 ~vv~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~il~~l~~~~~-------~~~~~~~----- 264 (588)
..++|+|..|+|||||++.+...... ...++...-.+.-.+.++....+..-..... +......
T Consensus 141 q~i~I~G~sG~GKTtLl~~I~~~~~~----~~gvi~~iGer~~ev~~~~~~~l~~~~~~~tvvv~atsd~~~~~r~~a~~ 216 (418)
T TIGR03498 141 QRLGIFAGSGVGKSTLLSMLARNTDA----DVVVIALVGERGREVREFLEDDLGEEGLKRSVVVVATSDESPLMRRQAAY 216 (418)
T ss_pred cEEEEECCCCCChHHHHHHHhCCCCC----CEEEEEEEeeechHHHHHHHHhhhccccceeEEEEECCCCCHHHHHHHHH
Confidence 58899999999999999988875432 2223322223333455555554443221111 1111111
Q ss_pred HHHHHHHHh--cCCceeEEeccc
Q 007817 265 VQVKLRIIV--DGKKFLLVLDDV 285 (588)
Q Consensus 265 l~~~l~~~l--~~k~~LLVlDdv 285 (588)
....+.+++ +++.+||++||+
T Consensus 217 ~a~~iAEyfrd~G~~Vll~~Dsl 239 (418)
T TIGR03498 217 TATAIAEYFRDQGKDVLLLMDSV 239 (418)
T ss_pred HHHHHHHHHHHcCCCEEEeccch
Confidence 122344555 588999999998
No 390
>COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only]
Probab=95.01 E-value=0.039 Score=56.19 Aligned_cols=157 Identities=19% Similarity=0.209 Sum_probs=79.4
Q ss_pred ceeechhhHHHHHHHHhcCCC-----------CCCCCeEEEEEEccCCCcHHHHHHHHHccccccc---cccc-EEEEE-
Q 007817 170 AVYGRDEDKARMLEMVLSDDP-----------TTDANFCVIPIVGMAGAGKTMLAREVYNDRAVQN---FKFD-VKAWV- 233 (588)
Q Consensus 170 ~~vGR~~e~~~l~~~L~~~~~-----------~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~---~~f~-~~~wv- 233 (588)
...|--.+...|.+.+..... -....-.+++|+|.+|+||||+.+.+........ +..+ +.+=+
T Consensus 372 d~~~lp~e~~~IleSFGv~~r~ieryvlr~vNL~ikpGdvvaVvGqSGaGKttllRmi~G~~~~~~ee~y~p~sg~v~vp 451 (593)
T COG2401 372 DIKGLPNEFQDILESFGVRQRVIERYVLRNLNLEIKPGDVVAVVGQSGAGKTTLLRMILGAQKGRGEEKYRPDSGKVEVP 451 (593)
T ss_pred ecccCChHHHHHHHHhcchheeeeeeeeeceeeEecCCCeEEEEecCCCCcchHHHHHHHHhhcccccccCCCCCceecc
Confidence 344555666666666533211 0012235899999999999999998876543221 0000 11111
Q ss_pred ----Ee----C--CcccHHHHHHHH-------------HHHhcCCCC--------CCCCHHHHHHHHHHHhcCCceeEEe
Q 007817 234 ----SV----S--DDFDVLRISRAL-------------LESITSTNC--------DFKTLNEVQVKLRIIVDGKKFLLVL 282 (588)
Q Consensus 234 ----~v----~--~~~~~~~~~~~i-------------l~~l~~~~~--------~~~~~~~l~~~l~~~l~~k~~LLVl 282 (588)
++ + ..++-..++..+ +...+.... +..+...-..+|...+..++-+++.
T Consensus 452 ~nt~~a~iPge~Ep~f~~~tilehl~s~tGD~~~AveILnraGlsDAvlyRr~f~ELStGQKeR~KLAkllaerpn~~~i 531 (593)
T COG2401 452 KNTVSALIPGEYEPEFGEVTILEHLRSKTGDLNAAVEILNRAGLSDAVLYRRKFSELSTGQKERAKLAKLLAERPNVLLI 531 (593)
T ss_pred ccchhhccCcccccccCchhHHHHHhhccCchhHHHHHHHhhccchhhhhhccHhhcCcchHHHHHHHHHHhcCCCcEEh
Confidence 11 1 112211333332 222222111 1122233345677888888899999
Q ss_pred cccccc-ChhHHHHhhcccCC--CCCCcEEEEeecchhhhhhccccc
Q 007817 283 DDVWNE-NYNLWEILKAPFMA--GARNSKIIVTTCHSNVASMMGSVE 326 (588)
Q Consensus 283 Ddv~~~-~~~~~~~l~~~l~~--~~~gs~ilvTTR~~~v~~~~~~~~ 326 (588)
|..... +...--.+...+.. ...|+.+++.|+.+++.+.+.++.
T Consensus 532 DEF~AhLD~~TA~rVArkiselaRe~giTlivvThrpEv~~AL~PD~ 578 (593)
T COG2401 532 DEFAAHLDELTAVRVARKISELAREAGITLIVVTHRPEVGNALRPDT 578 (593)
T ss_pred hhhhhhcCHHHHHHHHHHHHHHHHHhCCeEEEEecCHHHHhccCCce
Confidence 987321 11111112222222 225778888888888888775543
No 391
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=95.00 E-value=0.019 Score=53.20 Aligned_cols=24 Identities=29% Similarity=0.558 Sum_probs=21.6
Q ss_pred EEEEEEccCCCcHHHHHHHHHccc
Q 007817 197 CVIPIVGMAGAGKTMLAREVYNDR 220 (588)
Q Consensus 197 ~vv~I~G~gGiGKTtLA~~v~~~~ 220 (588)
++++|+|+.|+|||||++.+++..
T Consensus 2 ~ii~l~G~~GsGKsTl~~~L~~~~ 25 (180)
T TIGR03263 2 LLIVISGPSGVGKSTLVKALLEED 25 (180)
T ss_pred cEEEEECCCCCCHHHHHHHHHccC
Confidence 479999999999999999999843
No 392
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=94.97 E-value=0.16 Score=49.44 Aligned_cols=52 Identities=21% Similarity=0.146 Sum_probs=36.8
Q ss_pred eEEEEEEccCCCcHHHHHHHHHcccccccccccEEEEEEeCCcccHHHHHHHHHHH
Q 007817 196 FCVIPIVGMAGAGKTMLAREVYNDRAVQNFKFDVKAWVSVSDDFDVLRISRALLES 251 (588)
Q Consensus 196 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~il~~ 251 (588)
-.++.|.|.+|+|||+++.+++.+.... .=..++|++...+ ..++...++..
T Consensus 13 G~l~lI~G~~G~GKT~~~~~~~~~~~~~--~g~~vly~s~E~~--~~~~~~r~~~~ 64 (242)
T cd00984 13 GDLIIIAARPSMGKTAFALNIAENIAKK--QGKPVLFFSLEMS--KEQLLQRLLAS 64 (242)
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHHHh--CCCceEEEeCCCC--HHHHHHHHHHH
Confidence 3689999999999999999987765443 1236778777653 44555555543
No 393
>PRK05922 type III secretion system ATPase; Validated
Probab=94.96 E-value=0.15 Score=53.48 Aligned_cols=84 Identities=12% Similarity=0.217 Sum_probs=48.8
Q ss_pred EEEEEEccCCCcHHHHHHHHHcccccccccccEEEEEEeCC-cccHHHHHHHHHHHhcCCCC-------CCCCHH-----
Q 007817 197 CVIPIVGMAGAGKTMLAREVYNDRAVQNFKFDVKAWVSVSD-DFDVLRISRALLESITSTNC-------DFKTLN----- 263 (588)
Q Consensus 197 ~vv~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~wv~v~~-~~~~~~~~~~il~~l~~~~~-------~~~~~~----- 263 (588)
..++|+|..|+|||||.+.+.+... .+....+-++. .....+.+.+.......... +.....
T Consensus 158 qrigI~G~nG~GKSTLL~~Ia~~~~-----~d~gvi~liGerg~ev~eyl~q~~~~~~~~rTVlv~atsd~~~~~r~~a~ 232 (434)
T PRK05922 158 QRIGVFSEPGSGKSSLLSTIAKGSK-----STINVIALIGERGREVREYIEQHKEGLAAQRTIIIASPAHETAPTKVIAG 232 (434)
T ss_pred cEEEEECCCCCChHHHHHHHhccCC-----CCceEEEEeCCCCchHHHHHHHHHhhccccceEEEEECCCCCHHHHHHHH
Confidence 5689999999999999999987532 23333333433 22344555555443322211 111111
Q ss_pred HHHHHHHHHh--cCCceeEEeccc
Q 007817 264 EVQVKLRIIV--DGKKFLLVLDDV 285 (588)
Q Consensus 264 ~l~~~l~~~l--~~k~~LLVlDdv 285 (588)
.....+.+++ +|+.+||++||+
T Consensus 233 ~~a~tiAEyfrd~G~~VLl~~Dsl 256 (434)
T PRK05922 233 RAAMTIAEYFRDQGHRVLFIMDSL 256 (434)
T ss_pred HHHHHHHHHHHHcCCCEEEeccch
Confidence 1122344555 589999999999
No 394
>PRK09280 F0F1 ATP synthase subunit beta; Validated
Probab=94.96 E-value=0.12 Score=54.57 Aligned_cols=88 Identities=20% Similarity=0.244 Sum_probs=55.2
Q ss_pred eEEEEEEccCCCcHHHHHHHHHcccccccccccEEEEEEeCCcc-cHHHHHHHHHHHhcCCCC-------CCCCHHH---
Q 007817 196 FCVIPIVGMAGAGKTMLAREVYNDRAVQNFKFDVKAWVSVSDDF-DVLRISRALLESITSTNC-------DFKTLNE--- 264 (588)
Q Consensus 196 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~wv~v~~~~-~~~~~~~~il~~l~~~~~-------~~~~~~~--- 264 (588)
-+-++|.|.+|+|||||+..+..+.... +-+.++++-+++.. .+.+++.+++..-..... +......
T Consensus 144 GQR~gIfa~~GvGKt~Ll~~i~~~~~~~--~~~v~V~~liGER~rEv~efi~~~~~~~~l~rsvvV~atsd~p~~~r~~a 221 (463)
T PRK09280 144 GGKIGLFGGAGVGKTVLIQELINNIAKE--HGGYSVFAGVGERTREGNDLYHEMKESGVLDKTALVFGQMNEPPGARLRV 221 (463)
T ss_pred CCEEEeecCCCCChhHHHHHHHHHHHhc--CCCEEEEEEeccCcHHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHHH
Confidence 3578999999999999999987765432 22467777776543 456666666653211110 1111111
Q ss_pred --HHHHHHHHh---cCCceeEEeccc
Q 007817 265 --VQVKLRIIV---DGKKFLLVLDDV 285 (588)
Q Consensus 265 --l~~~l~~~l---~~k~~LLVlDdv 285 (588)
....+.+++ +++.+||++||+
T Consensus 222 ~~~a~tiAEyfrd~~G~~VLll~Dsl 247 (463)
T PRK09280 222 ALTGLTMAEYFRDVEGQDVLLFIDNI 247 (463)
T ss_pred HHHHHHHHHHHHHhcCCceEEEecch
Confidence 122355555 689999999998
No 395
>cd01136 ATPase_flagellum-secretory_path_III Flagellum-specific ATPase/type III secretory pathway virulence-related protein. This group of ATPases are responsible for the export of flagellum and virulence-related proteins. The bacterial flagellar motor is similar to the F0F1-ATPase, in that they both are proton driven rotary molecular devices. However, the main function of the bacterial flagellar motor is to rotate the flagellar filament for cell motility. Intracellular pathogens such as Salmonella and Chlamydia also have proteins which are similar to the flagellar-specific ATPase, but function in the secretion of virulence-related proteins via the type III secretory pathway.
Probab=94.96 E-value=0.15 Score=51.54 Aligned_cols=84 Identities=19% Similarity=0.188 Sum_probs=48.9
Q ss_pred EEEEEEccCCCcHHHHHHHHHcccccccccccEEEEEEeC-CcccHHHHHHHHHHHhcCCC-------CCCCCHH-----
Q 007817 197 CVIPIVGMAGAGKTMLAREVYNDRAVQNFKFDVKAWVSVS-DDFDVLRISRALLESITSTN-------CDFKTLN----- 263 (588)
Q Consensus 197 ~vv~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~wv~v~-~~~~~~~~~~~il~~l~~~~-------~~~~~~~----- 263 (588)
..++|+|..|+|||||.+.+.+... .+..+..-+. +.-++.++....+..-.... .+.....
T Consensus 70 qri~I~G~sG~GKTtLl~~Ia~~~~-----~~~~vi~~iGer~~ev~~~~~~~~~~~~l~rtvvv~~t~d~~~~~r~~~~ 144 (326)
T cd01136 70 QRLGIFAGSGVGKSTLLGMIARGTT-----ADVNVIALIGERGREVREFIEKDLGEEGLKRSVVVVATSDESPLLRVKAA 144 (326)
T ss_pred cEEEEECCCCCChHHHHHHHhCCCC-----CCEEEEEEEecCCccHHHHHHHHHhcCccceEEEEEcCCCCCHHHHHHHH
Confidence 5789999999999999999987543 2333334443 33455555555554322111 0111111
Q ss_pred HHHHHHHHHh--cCCceeEEeccc
Q 007817 264 EVQVKLRIIV--DGKKFLLVLDDV 285 (588)
Q Consensus 264 ~l~~~l~~~l--~~k~~LLVlDdv 285 (588)
.....+.+++ +++.+||++||+
T Consensus 145 ~~a~~~AEyfr~~g~~Vll~~Dsl 168 (326)
T cd01136 145 YTATAIAEYFRDQGKDVLLLMDSL 168 (326)
T ss_pred HHHHHHHHHHHHcCCCeEEEeccc
Confidence 1122333444 589999999998
No 396
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=94.96 E-value=0.035 Score=52.32 Aligned_cols=42 Identities=24% Similarity=0.305 Sum_probs=28.7
Q ss_pred EEEEEccCCCcHHHHHHHHHcccccccccccEEEEEEeCCcccH
Q 007817 198 VIPIVGMAGAGKTMLAREVYNDRAVQNFKFDVKAWVSVSDDFDV 241 (588)
Q Consensus 198 vv~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~wv~v~~~~~~ 241 (588)
.|+|+|-||+||||+|..+......++ .| .++=|+...++++
T Consensus 2 kIaI~GKGG~GKTtiaalll~~l~~~~-~~-~VLvVDaDpd~nL 43 (255)
T COG3640 2 KIAITGKGGVGKTTIAALLLKRLLSKG-GY-NVLVVDADPDSNL 43 (255)
T ss_pred eEEEecCCCccHHHHHHHHHHHHHhcC-Cc-eEEEEeCCCCCCh
Confidence 589999999999999988666554443 23 3344565555543
No 397
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=94.92 E-value=0.017 Score=53.64 Aligned_cols=23 Identities=30% Similarity=0.440 Sum_probs=20.7
Q ss_pred EEEEEccCCCcHHHHHHHHHccc
Q 007817 198 VIPIVGMAGAGKTMLAREVYNDR 220 (588)
Q Consensus 198 vv~I~G~gGiGKTtLA~~v~~~~ 220 (588)
+|+|.|.+|+||||||+.+....
T Consensus 1 ii~i~G~sgsGKTtla~~l~~~~ 23 (187)
T cd02024 1 IVGISGVTNSGKTTLAKLLQRIL 23 (187)
T ss_pred CEEEECCCCCCHHHHHHHHHHHc
Confidence 58999999999999999998854
No 398
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=94.90 E-value=0.03 Score=51.17 Aligned_cols=23 Identities=39% Similarity=0.544 Sum_probs=19.9
Q ss_pred EEEEccCCCcHHHHHHHHHcccc
Q 007817 199 IPIVGMAGAGKTMLAREVYNDRA 221 (588)
Q Consensus 199 v~I~G~gGiGKTtLA~~v~~~~~ 221 (588)
+.|.|.+|+|||||++.+++..+
T Consensus 2 i~iTG~pG~GKTTll~k~i~~l~ 24 (168)
T PF03266_consen 2 IFITGPPGVGKTTLLKKVIEELK 24 (168)
T ss_dssp EEEES-TTSSHHHHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHHHHhh
Confidence 68999999999999999998764
No 399
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=94.88 E-value=0.032 Score=60.29 Aligned_cols=59 Identities=14% Similarity=0.247 Sum_probs=43.1
Q ss_pred eeechhhHHHHHHHHhcCCCCCCCCeEEEEEEccCCCcHHHHHHHHHcccccccccccEEEEEEe
Q 007817 171 VYGRDEDKARMLEMVLSDDPTTDANFCVIPIVGMAGAGKTMLAREVYNDRAVQNFKFDVKAWVSV 235 (588)
Q Consensus 171 ~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~wv~v 235 (588)
++--.+-++++..||...-. .....+++.+.|++|+||||.++.+++.. .|+..-|.+-
T Consensus 21 LavhkkKv~eV~~wl~~~~~-~~~~~~iLlLtGP~G~GKtttv~~La~el-----g~~v~Ew~np 79 (519)
T PF03215_consen 21 LAVHKKKVEEVRSWLEEMFS-GSSPKRILLLTGPSGCGKTTTVKVLAKEL-----GFEVQEWINP 79 (519)
T ss_pred hhccHHHHHHHHHHHHHHhc-cCCCcceEEEECCCCCCHHHHHHHHHHHh-----CCeeEEecCC
Confidence 44445677888888875432 22345699999999999999999999865 4667778653
No 400
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=94.88 E-value=0.1 Score=58.60 Aligned_cols=131 Identities=16% Similarity=0.106 Sum_probs=71.5
Q ss_pred CceeechhhHHHHHHHHhcCCCCCCCCeEEEEEEccCCCcHHHHHHHHHcccccccccccEEEEEEeCCcccHHHHHHHH
Q 007817 169 RAVYGRDEDKARMLEMVLSDDPTTDANFCVIPIVGMAGAGKTMLAREVYNDRAVQNFKFDVKAWVSVSDDFDVLRISRAL 248 (588)
Q Consensus 169 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i 248 (588)
+.++|....+.++.+.+..... ...-|.|+|..|+||+++|+.+.+...... ...+.|++..-. ...+..++
T Consensus 325 ~~l~g~s~~~~~~~~~~~~~a~----~~~pvli~Ge~GtGK~~~A~~ih~~s~r~~---~pfv~vnc~~~~-~~~~~~el 396 (638)
T PRK11388 325 DHMPQDSPQMRRLIHFGRQAAK----SSFPVLLCGEEGVGKALLAQAIHNESERAA---GPYIAVNCQLYP-DEALAEEF 396 (638)
T ss_pred cceEECCHHHHHHHHHHHHHhC----cCCCEEEECCCCcCHHHHHHHHHHhCCccC---CCeEEEECCCCC-hHHHHHHh
Confidence 4578998888888777765432 223478999999999999999987543211 122334544332 12222333
Q ss_pred HHHhcCCCCCCCCHHHHHHHHHHHhcCCceeEEeccccccChhHHHHhhcccCCCC-----------CCcEEEEeecc
Q 007817 249 LESITSTNCDFKTLNEVQVKLRIIVDGKKFLLVLDDVWNENYNLWEILKAPFMAGA-----------RNSKIIVTTCH 315 (588)
Q Consensus 249 l~~l~~~~~~~~~~~~l~~~l~~~l~~k~~LLVlDdv~~~~~~~~~~l~~~l~~~~-----------~gs~ilvTTR~ 315 (588)
+......... ... ..+-....=.|+||++..........|...+..+. ...+||.||..
T Consensus 397 fg~~~~~~~~-~~~-------g~~~~a~~GtL~ldei~~l~~~~Q~~Ll~~l~~~~~~~~~~~~~~~~~~riI~~t~~ 466 (638)
T PRK11388 397 LGSDRTDSEN-GRL-------SKFELAHGGTLFLEKVEYLSPELQSALLQVLKTGVITRLDSRRLIPVDVRVIATTTA 466 (638)
T ss_pred cCCCCcCccC-CCC-------CceeECCCCEEEEcChhhCCHHHHHHHHHHHhcCcEEeCCCCceEEeeEEEEEeccC
Confidence 3221110000 000 00001223468999998777666666766554321 13467777654
No 401
>PRK08927 fliI flagellum-specific ATP synthase; Validated
Probab=94.87 E-value=0.1 Score=54.87 Aligned_cols=85 Identities=19% Similarity=0.171 Sum_probs=51.3
Q ss_pred eEEEEEEccCCCcHHHHHHHHHcccccccccccEEEEEEeCCcc-cHHHHHHHHHHHhcCCCC-------CCCCHH----
Q 007817 196 FCVIPIVGMAGAGKTMLAREVYNDRAVQNFKFDVKAWVSVSDDF-DVLRISRALLESITSTNC-------DFKTLN---- 263 (588)
Q Consensus 196 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~wv~v~~~~-~~~~~~~~il~~l~~~~~-------~~~~~~---- 263 (588)
-..++|+|..|+|||||++.+++... .+.++++-+++.. .+.++..+.+..-+.... +.....
T Consensus 158 Gqri~I~G~sG~GKTtLL~~I~~~~~-----~d~~v~~~iGER~rEv~ef~~~~l~~~~l~rsvvv~atsd~~~~~r~~a 232 (442)
T PRK08927 158 GQRMGIFAGSGVGKSVLLSMLARNAD-----ADVSVIGLIGERGREVQEFLQDDLGPEGLARSVVVVATSDEPALMRRQA 232 (442)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhccC-----CCEEEEEEEecCcHHHHHHHHHHhhccCceeEEEEEECCCCCHHHHHHH
Confidence 36889999999999999999987543 3455556665543 344555545443211110 111111
Q ss_pred -HHHHHHHHHh--cCCceeEEeccc
Q 007817 264 -EVQVKLRIIV--DGKKFLLVLDDV 285 (588)
Q Consensus 264 -~l~~~l~~~l--~~k~~LLVlDdv 285 (588)
.....+.+++ +++.+||++||+
T Consensus 233 ~~~a~tiAEyfrd~G~~Vll~~Dsl 257 (442)
T PRK08927 233 AYLTLAIAEYFRDQGKDVLCLMDSV 257 (442)
T ss_pred HHHHHHHHHHHHHCCCcEEEEEeCc
Confidence 1122344455 589999999999
No 402
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=94.86 E-value=0.15 Score=54.48 Aligned_cols=83 Identities=17% Similarity=0.128 Sum_probs=49.9
Q ss_pred CeEEEEEEccCCCcHHHHHHHHHcccccccccccEEEEEEeCCcccHHHHHHHHHHHhcCCCC-----CCCCHHHHHHHH
Q 007817 195 NFCVIPIVGMAGAGKTMLAREVYNDRAVQNFKFDVKAWVSVSDDFDVLRISRALLESITSTNC-----DFKTLNEVQVKL 269 (588)
Q Consensus 195 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~il~~l~~~~~-----~~~~~~~l~~~l 269 (588)
.-.++.|.|.+|+|||||+.++.......+ ..++|++..+.. ..+.. -+..++.... ...+.+.+...+
T Consensus 93 ~GsvilI~G~pGsGKTTL~lq~a~~~a~~g---~kvlYvs~EEs~--~qi~~-ra~rlg~~~~~l~~~~e~~~~~I~~~i 166 (454)
T TIGR00416 93 PGSLILIGGDPGIGKSTLLLQVACQLAKNQ---MKVLYVSGEESL--QQIKM-RAIRLGLPEPNLYVLSETNWEQICANI 166 (454)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHhcC---CcEEEEECcCCH--HHHHH-HHHHcCCChHHeEEcCCCCHHHHHHHH
Confidence 447999999999999999999977654322 357788776543 22221 1223332211 223444444443
Q ss_pred HHHhcCCceeEEecccc
Q 007817 270 RIIVDGKKFLLVLDDVW 286 (588)
Q Consensus 270 ~~~l~~k~~LLVlDdv~ 286 (588)
. +.+.-++|+|.+.
T Consensus 167 ~---~~~~~~vVIDSIq 180 (454)
T TIGR00416 167 E---EENPQACVIDSIQ 180 (454)
T ss_pred H---hcCCcEEEEecch
Confidence 3 2356789999884
No 403
>PRK12678 transcription termination factor Rho; Provisional
Probab=94.85 E-value=0.035 Score=59.42 Aligned_cols=99 Identities=18% Similarity=0.262 Sum_probs=53.2
Q ss_pred HHHHHHhcCCCCCCCCeEEEEEEccCCCcHHHHHHHHHcccccccccccEEEEE-EeCCcc-cHHHHHHHHHHHhcCCCC
Q 007817 180 RMLEMVLSDDPTTDANFCVIPIVGMAGAGKTMLAREVYNDRAVQNFKFDVKAWV-SVSDDF-DVLRISRALLESITSTNC 257 (588)
Q Consensus 180 ~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~wv-~v~~~~-~~~~~~~~il~~l~~~~~ 257 (588)
+++++|..- +.-.-.+|+|++|+|||||++.+.+..... +-++.++| -+.+.. .+.++.+.+-..+-....
T Consensus 405 RvIDll~PI-----GkGQR~LIvgpp~aGKTtLL~~IAn~i~~n--~~~~~~ivvLIgERpeEVtdm~rsVkgeVVasT~ 477 (672)
T PRK12678 405 RVIDLIMPI-----GKGQRGLIVSPPKAGKTTILQNIANAITTN--NPECHLMVVLVDERPEEVTDMQRSVKGEVIASTF 477 (672)
T ss_pred eeeeeeccc-----ccCCEeEEeCCCCCCHHHHHHHHHHHHhhc--CCCeEEEEEEEeCchhhHHHHHHhccceEEEECC
Confidence 455555432 233578899999999999999999865432 34444443 344332 233332222111111111
Q ss_pred CCCC-----HHHHHHHHHHHh--cCCceeEEeccc
Q 007817 258 DFKT-----LNEVQVKLRIIV--DGKKFLLVLDDV 285 (588)
Q Consensus 258 ~~~~-----~~~l~~~l~~~l--~~k~~LLVlDdv 285 (588)
+... ...+.-.+.+++ .++.+||++|++
T Consensus 478 D~p~~~~~~~a~~ai~~Ae~fre~G~dVlillDSl 512 (672)
T PRK12678 478 DRPPSDHTTVAELAIERAKRLVELGKDVVVLLDSI 512 (672)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEEeCc
Confidence 1111 122222344444 689999999998
No 404
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=94.85 E-value=0.02 Score=51.44 Aligned_cols=20 Identities=35% Similarity=0.617 Sum_probs=18.7
Q ss_pred EEEEEccCCCcHHHHHHHHH
Q 007817 198 VIPIVGMAGAGKTMLAREVY 217 (588)
Q Consensus 198 vv~I~G~gGiGKTtLA~~v~ 217 (588)
.|+|.|.+|+||||++..+.
T Consensus 2 ~I~ITGTPGvGKTT~~~~L~ 21 (180)
T COG1936 2 LIAITGTPGVGKTTVCKLLR 21 (180)
T ss_pred eEEEeCCCCCchHHHHHHHH
Confidence 58999999999999999987
No 405
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=94.84 E-value=0.018 Score=51.10 Aligned_cols=23 Identities=35% Similarity=0.527 Sum_probs=20.8
Q ss_pred EEEEEccCCCcHHHHHHHHHccc
Q 007817 198 VIPIVGMAGAGKTMLAREVYNDR 220 (588)
Q Consensus 198 vv~I~G~gGiGKTtLA~~v~~~~ 220 (588)
+|.|.|++|+||||+|+.+....
T Consensus 1 ~I~i~G~~GsGKst~a~~la~~~ 23 (147)
T cd02020 1 IIAIDGPAGSGKSTVAKLLAKKL 23 (147)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 57899999999999999999854
No 406
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=94.84 E-value=0.086 Score=52.20 Aligned_cols=28 Identities=29% Similarity=0.328 Sum_probs=24.8
Q ss_pred CCeEEEEEEccCCCcHHHHHHHHHcccc
Q 007817 194 ANFCVIPIVGMAGAGKTMLAREVYNDRA 221 (588)
Q Consensus 194 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~ 221 (588)
.+..++.|.|.+|+|||||...+.+...
T Consensus 102 ~~~~~v~l~G~pGsGKTTLl~~l~~~l~ 129 (290)
T PRK10463 102 RKQLVLNLVSSPGSGKTTLLTETLMRLK 129 (290)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence 4678999999999999999999998654
No 407
>PTZ00185 ATPase alpha subunit; Provisional
Probab=94.83 E-value=0.18 Score=53.62 Aligned_cols=90 Identities=21% Similarity=0.180 Sum_probs=53.2
Q ss_pred eEEEEEEccCCCcHHHHH-HHHHccccc-----ccccccEEEEEEeCCcccHHHHHHHHHHHhcC-CCC-----CCCC--
Q 007817 196 FCVIPIVGMAGAGKTMLA-REVYNDRAV-----QNFKFDVKAWVSVSDDFDVLRISRALLESITS-TNC-----DFKT-- 261 (588)
Q Consensus 196 ~~vv~I~G~gGiGKTtLA-~~v~~~~~~-----~~~~f~~~~wv~v~~~~~~~~~~~~il~~l~~-~~~-----~~~~-- 261 (588)
-.-++|.|..|+|||+|| ..+.++... .. .-+.++++-+++..+.-.-+.+.+++-+. ... ..++
T Consensus 189 GQR~lIfGd~GtGKTtLAld~IinQ~~~~~~~~~~-~~~v~VyvaIGeR~rEV~ei~~~L~e~GaL~~TvVV~AtAdep~ 267 (574)
T PTZ00185 189 GQRELIVGDRQTGKTSIAVSTIINQVRINQQILSK-NAVISIYVSIGQRCSNVARIHRLLRSYGALRYTTVMAATAAEPA 267 (574)
T ss_pred CCEEEeecCCCCChHHHHHHHHHhhhhhccccccC-CCCEEEEEEeccchHHHHHHHHHHHhcCCccceEEEEECCCCCH
Confidence 357899999999999997 666665422 12 34577888888776543334444444331 111 1111
Q ss_pred HHH-----HHHHHHHHh--cCCceeEEecccc
Q 007817 262 LNE-----VQVKLRIIV--DGKKFLLVLDDVW 286 (588)
Q Consensus 262 ~~~-----l~~~l~~~l--~~k~~LLVlDdv~ 286 (588)
... ....+.+++ +++..|||+||+-
T Consensus 268 ~~r~~Apy~a~tiAEYFrd~GkdVLiv~DDLT 299 (574)
T PTZ00185 268 GLQYLAPYSGVTMGEYFMNRGRHCLCVYDDLS 299 (574)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCEEEEEcCch
Confidence 111 112334444 5899999999983
No 408
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=94.82 E-value=0.019 Score=53.10 Aligned_cols=24 Identities=38% Similarity=0.609 Sum_probs=21.5
Q ss_pred EEEEEccCCCcHHHHHHHHHcccc
Q 007817 198 VIPIVGMAGAGKTMLAREVYNDRA 221 (588)
Q Consensus 198 vv~I~G~gGiGKTtLA~~v~~~~~ 221 (588)
+|+|.|.+|+||||||+.+.....
T Consensus 1 ii~i~G~sgsGKttla~~l~~~l~ 24 (179)
T cd02028 1 VVGIAGPSGSGKTTFAKKLSNQLR 24 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHH
Confidence 589999999999999999988654
No 409
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=94.82 E-value=0.053 Score=46.35 Aligned_cols=42 Identities=14% Similarity=0.191 Sum_probs=31.1
Q ss_pred hhHHHHHHHHhcCCCCCCCCeEEEEEEccCCCcHHHHHHHHHccc
Q 007817 176 EDKARMLEMVLSDDPTTDANFCVIPIVGMAGAGKTMLAREVYNDR 220 (588)
Q Consensus 176 ~e~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~ 220 (588)
.-.+.|...+.... ..++-|++.+|.+|+|||.+++.+++..
T Consensus 36 ~v~~ai~~~l~~~~---p~KpLVlSfHG~tGtGKn~v~~liA~~l 77 (127)
T PF06309_consen 36 VVVNAIKGHLANPN---PRKPLVLSFHGWTGTGKNFVSRLIAEHL 77 (127)
T ss_pred HHHHHHHHHHcCCC---CCCCEEEEeecCCCCcHHHHHHHHHHHH
Confidence 34455555554442 4677899999999999999988888774
No 410
>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional
Probab=94.80 E-value=0.1 Score=56.71 Aligned_cols=47 Identities=17% Similarity=0.318 Sum_probs=37.5
Q ss_pred CceeechhhHHHHHHHHhcCCCCCCCCeEEEEEEccCCCcHHHHHHHHHcc
Q 007817 169 RAVYGRDEDKARMLEMVLSDDPTTDANFCVIPIVGMAGAGKTMLAREVYND 219 (588)
Q Consensus 169 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~ 219 (588)
..++|....+.++.+.+..-.. ...-|.|.|..|+||+.+|+.+++.
T Consensus 219 ~~iiG~S~~m~~~~~~i~~~A~----s~~pVLI~GE~GTGKe~~A~~IH~~ 265 (538)
T PRK15424 219 GDLLGQSPQMEQVRQTILLYAR----SSAAVLIQGETGTGKELAAQAIHRE 265 (538)
T ss_pred hheeeCCHHHHHHHHHHHHHhC----CCCcEEEECCCCCCHHHHHHHHHHh
Confidence 3589999888888888754321 2357889999999999999999885
No 411
>PRK07594 type III secretion system ATPase SsaN; Validated
Probab=94.77 E-value=0.11 Score=54.53 Aligned_cols=85 Identities=21% Similarity=0.263 Sum_probs=49.9
Q ss_pred eEEEEEEccCCCcHHHHHHHHHcccccccccccEEEEEEeCCc-ccHHHHHHHHHHHhcCCC-------CCCCCHHHH--
Q 007817 196 FCVIPIVGMAGAGKTMLAREVYNDRAVQNFKFDVKAWVSVSDD-FDVLRISRALLESITSTN-------CDFKTLNEV-- 265 (588)
Q Consensus 196 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~wv~v~~~-~~~~~~~~~il~~l~~~~-------~~~~~~~~l-- 265 (588)
-..++|+|..|+|||||.+.+.+.. ..+..+++.++.. ..+.+++.+....-.... .+.......
T Consensus 155 GqrigI~G~sG~GKSTLL~~I~~~~-----~~d~~vi~~iGeRgrEv~efl~~~~~~~~~~rtv~vv~tsd~p~~~r~~a 229 (433)
T PRK07594 155 GQRVGIFSAPGVGKSTLLAMLCNAP-----DADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRA 229 (433)
T ss_pred CCEEEEECCCCCCccHHHHHhcCCC-----CCCEEEEEEECCCchHHHHHHHHhhccCCcceEEEEEECCCCCHHHHHHH
Confidence 3588999999999999999998754 3344555555543 344455555432110000 011111111
Q ss_pred ---HHHHHHHh--cCCceeEEeccc
Q 007817 266 ---QVKLRIIV--DGKKFLLVLDDV 285 (588)
Q Consensus 266 ---~~~l~~~l--~~k~~LLVlDdv 285 (588)
...+.+++ +++++||++||+
T Consensus 230 ~~~a~tiAEyfrd~G~~VLl~~Dsl 254 (433)
T PRK07594 230 LFVATTIAEFFRDNGKRVVLLADSL 254 (433)
T ss_pred HHHHHHHHHHHHHCCCcEEEEEeCH
Confidence 22344444 588999999999
No 412
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=94.77 E-value=0.24 Score=50.19 Aligned_cols=24 Identities=29% Similarity=0.332 Sum_probs=21.8
Q ss_pred EEEEEEccCCCcHHHHHHHHHccc
Q 007817 197 CVIPIVGMAGAGKTMLAREVYNDR 220 (588)
Q Consensus 197 ~vv~I~G~gGiGKTtLA~~v~~~~ 220 (588)
.+++|.|+.|.|||||.+.++.-.
T Consensus 34 ei~gllGpNGaGKSTLl~~l~Gl~ 57 (306)
T PRK13537 34 ECFGLLGPNGAGKTTTLRMLLGLT 57 (306)
T ss_pred cEEEEECCCCCCHHHHHHHHhcCC
Confidence 589999999999999999998754
No 413
>TIGR00455 apsK adenylylsulfate kinase (apsK). Important residue (active site in E.coli) is residue 100 of the seed alignment.
Probab=94.76 E-value=0.13 Score=47.78 Aligned_cols=27 Identities=26% Similarity=0.407 Sum_probs=23.5
Q ss_pred CeEEEEEEccCCCcHHHHHHHHHcccc
Q 007817 195 NFCVIPIVGMAGAGKTMLAREVYNDRA 221 (588)
Q Consensus 195 ~~~vv~I~G~gGiGKTtLA~~v~~~~~ 221 (588)
...++.|.|.+|+||||+|+.+.....
T Consensus 17 ~~~~i~i~G~~GsGKstla~~l~~~l~ 43 (184)
T TIGR00455 17 RGVVIWLTGLSGSGKSTIANALEKKLE 43 (184)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 347999999999999999999988653
No 414
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=94.74 E-value=0.18 Score=51.08 Aligned_cols=28 Identities=29% Similarity=0.375 Sum_probs=24.4
Q ss_pred CeEEEEEEccCCCcHHHHHHHHHccccc
Q 007817 195 NFCVIPIVGMAGAGKTMLAREVYNDRAV 222 (588)
Q Consensus 195 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~ 222 (588)
...+++++|++|+||||++..++.....
T Consensus 113 ~~~vi~lvGpnGsGKTTt~~kLA~~l~~ 140 (318)
T PRK10416 113 KPFVILVVGVNGVGKTTTIGKLAHKYKA 140 (318)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHh
Confidence 4589999999999999999999887654
No 415
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=94.72 E-value=0.29 Score=49.12 Aligned_cols=25 Identities=28% Similarity=0.333 Sum_probs=22.6
Q ss_pred EEEEEEccCCCcHHHHHHHHHcccc
Q 007817 197 CVIPIVGMAGAGKTMLAREVYNDRA 221 (588)
Q Consensus 197 ~vv~I~G~gGiGKTtLA~~v~~~~~ 221 (588)
.++++.|+.|+|||||.+.+..-.+
T Consensus 32 ei~gllG~NGAGKTTllk~l~gl~~ 56 (293)
T COG1131 32 EIFGLLGPNGAGKTTLLKILAGLLK 56 (293)
T ss_pred eEEEEECCCCCCHHHHHHHHhCCcC
Confidence 6999999999999999999987654
No 416
>PRK06936 type III secretion system ATPase; Provisional
Probab=94.72 E-value=0.13 Score=54.05 Aligned_cols=85 Identities=21% Similarity=0.275 Sum_probs=52.1
Q ss_pred eEEEEEEccCCCcHHHHHHHHHcccccccccccEEEEEEeCCcc-cHHHHHHHHHHHhcCCCC-------CCCCHHH---
Q 007817 196 FCVIPIVGMAGAGKTMLAREVYNDRAVQNFKFDVKAWVSVSDDF-DVLRISRALLESITSTNC-------DFKTLNE--- 264 (588)
Q Consensus 196 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~wv~v~~~~-~~~~~~~~il~~l~~~~~-------~~~~~~~--- 264 (588)
-..++|.|..|+|||||.+.+++.. ..+.++++-+++.. .+.++....+..-+.... +......
T Consensus 162 Gq~~~I~G~sG~GKStLl~~Ia~~~-----~~dv~V~~liGERgrEv~ef~~~~l~~~~l~rtvvv~atsd~p~~~R~~a 236 (439)
T PRK06936 162 GQRMGIFAAAGGGKSTLLASLIRSA-----EVDVTVLALIGERGREVREFIESDLGEEGLRKAVLVVATSDRPSMERAKA 236 (439)
T ss_pred CCEEEEECCCCCChHHHHHHHhcCC-----CCCEEEEEEEccCcHHHHHHHHHHhcccccceeEEEEECCCCCHHHHHHH
Confidence 3689999999999999999999854 34567777776554 344555443332111110 1111111
Q ss_pred --HHHHHHHHh--cCCceeEEeccc
Q 007817 265 --VQVKLRIIV--DGKKFLLVLDDV 285 (588)
Q Consensus 265 --l~~~l~~~l--~~k~~LLVlDdv 285 (588)
....+.+++ +++.+||++||+
T Consensus 237 ~~~a~tiAEyfrd~G~~Vll~~Dsl 261 (439)
T PRK06936 237 GFVATSIAEYFRDQGKRVLLLMDSV 261 (439)
T ss_pred HHHHHHHHHHHHHcCCCEEEeccch
Confidence 112244444 589999999999
No 417
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=94.72 E-value=0.026 Score=48.06 Aligned_cols=23 Identities=35% Similarity=0.546 Sum_probs=20.0
Q ss_pred EEEEccCCCcHHHHHHHHHcccc
Q 007817 199 IPIVGMAGAGKTMLAREVYNDRA 221 (588)
Q Consensus 199 v~I~G~gGiGKTtLA~~v~~~~~ 221 (588)
|.|+|..|+|||||.+.+.....
T Consensus 2 I~V~G~~g~GKTsLi~~l~~~~~ 24 (119)
T PF08477_consen 2 IVVLGDSGVGKTSLIRRLCGGEF 24 (119)
T ss_dssp EEEECSTTSSHHHHHHHHHHSS-
T ss_pred EEEECcCCCCHHHHHHHHhcCCC
Confidence 68999999999999999987654
No 418
>PF13245 AAA_19: Part of AAA domain
Probab=94.69 E-value=0.055 Score=42.14 Aligned_cols=22 Identities=23% Similarity=0.256 Sum_probs=16.4
Q ss_pred EEEEEEccCCCcHHHHHHHHHc
Q 007817 197 CVIPIVGMAGAGKTMLAREVYN 218 (588)
Q Consensus 197 ~vv~I~G~gGiGKTtLA~~v~~ 218 (588)
+++.|.|++|.|||+++.....
T Consensus 11 ~~~vv~g~pGtGKT~~~~~~i~ 32 (76)
T PF13245_consen 11 PLFVVQGPPGTGKTTTLAARIA 32 (76)
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 5788899999999955544433
No 419
>PRK00300 gmk guanylate kinase; Provisional
Probab=94.69 E-value=0.026 Score=53.52 Aligned_cols=25 Identities=28% Similarity=0.441 Sum_probs=22.3
Q ss_pred eEEEEEEccCCCcHHHHHHHHHccc
Q 007817 196 FCVIPIVGMAGAGKTMLAREVYNDR 220 (588)
Q Consensus 196 ~~vv~I~G~gGiGKTtLA~~v~~~~ 220 (588)
..+++|+|++|+|||||++.++...
T Consensus 5 g~~i~i~G~sGsGKstl~~~l~~~~ 29 (205)
T PRK00300 5 GLLIVLSGPSGAGKSTLVKALLERD 29 (205)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhC
Confidence 3689999999999999999998853
No 420
>PRK13949 shikimate kinase; Provisional
Probab=94.69 E-value=0.024 Score=51.96 Aligned_cols=24 Identities=38% Similarity=0.541 Sum_probs=21.3
Q ss_pred EEEEEccCCCcHHHHHHHHHcccc
Q 007817 198 VIPIVGMAGAGKTMLAREVYNDRA 221 (588)
Q Consensus 198 vv~I~G~gGiGKTtLA~~v~~~~~ 221 (588)
-|.|+|++|+||||+++.+++...
T Consensus 3 ~I~liG~~GsGKstl~~~La~~l~ 26 (169)
T PRK13949 3 RIFLVGYMGAGKTTLGKALARELG 26 (169)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcC
Confidence 588999999999999999998653
No 421
>COG2842 Uncharacterized ATPase, putative transposase [General function prediction only]
Probab=94.68 E-value=0.29 Score=48.07 Aligned_cols=98 Identities=17% Similarity=0.215 Sum_probs=70.4
Q ss_pred EEEEEEccCCCcHHHHHHHHHcccccccccccEEEEEEeCCcccHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhcCC
Q 007817 197 CVIPIVGMAGAGKTMLAREVYNDRAVQNFKFDVKAWVSVSDDFDVLRISRALLESITSTNCDFKTLNEVQVKLRIIVDGK 276 (588)
Q Consensus 197 ~vv~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~il~~l~~~~~~~~~~~~l~~~l~~~l~~k 276 (588)
+.+.|+|..|+|||+-++.+++.. +...-+..+..++...+...+........ ..........+...+.+.
T Consensus 95 ~l~~vyg~~g~gKt~a~~~y~~s~-------p~~~l~~~~p~~~a~~~i~~i~~~~~~~~--~~~~~d~~~~~~~~l~~~ 165 (297)
T COG2842 95 SLVVVYGYAGLGKTQAAKNYAPSN-------PNALLIEADPSYTALVLILIICAAAFGAT--DGTINDLTERLMIRLRDT 165 (297)
T ss_pred ceEEEeccccchhHHHHHhhcccC-------ccceeecCChhhHHHHHHHHHHHHHhccc--chhHHHHHHHHHHHHccC
Confidence 488899999999999999999842 23334566777777777777776665443 233455556666777888
Q ss_pred ceeEEeccccccChhHHHHhhcccCCC
Q 007817 277 KFLLVLDDVWNENYNLWEILKAPFMAG 303 (588)
Q Consensus 277 ~~LLVlDdv~~~~~~~~~~l~~~l~~~ 303 (588)
.-+++.|+...-....++.++......
T Consensus 166 ~~~iivDEA~~L~~~ale~lr~i~d~~ 192 (297)
T COG2842 166 VRLIIVDEADRLPYRALEELRRIHDKT 192 (297)
T ss_pred cceeeeehhhccChHHHHHHHHHHHhh
Confidence 899999998777777777777655443
No 422
>PRK05973 replicative DNA helicase; Provisional
Probab=94.67 E-value=0.074 Score=51.31 Aligned_cols=40 Identities=15% Similarity=0.125 Sum_probs=29.9
Q ss_pred eEEEEEEccCCCcHHHHHHHHHcccccccccccEEEEEEeCCc
Q 007817 196 FCVIPIVGMAGAGKTMLAREVYNDRAVQNFKFDVKAWVSVSDD 238 (588)
Q Consensus 196 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~wv~v~~~ 238 (588)
-.++.|.|.+|+|||++|.++....-.. -..+++++...+
T Consensus 64 Gsl~LIaG~PG~GKT~lalqfa~~~a~~---Ge~vlyfSlEes 103 (237)
T PRK05973 64 GDLVLLGARPGHGKTLLGLELAVEAMKS---GRTGVFFTLEYT 103 (237)
T ss_pred CCEEEEEeCCCCCHHHHHHHHHHHHHhc---CCeEEEEEEeCC
Confidence 3688999999999999999987755322 235667777654
No 423
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=94.66 E-value=0.054 Score=59.89 Aligned_cols=74 Identities=14% Similarity=0.108 Sum_probs=53.2
Q ss_pred CceeechhhHHHHHHHHhcCCCCCCCCeEEEEEEccCCCcHHHHHHHHHcccccccccccEEEEEEeCCcccHHHHHHHH
Q 007817 169 RAVYGRDEDKARMLEMVLSDDPTTDANFCVIPIVGMAGAGKTMLAREVYNDRAVQNFKFDVKAWVSVSDDFDVLRISRAL 248 (588)
Q Consensus 169 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i 248 (588)
..++|.+..++.|...+... +.+.|+|++|+||||+|+.+.+.... . .++..+|..-+. .+...+++.+
T Consensus 31 ~~vigq~~a~~~L~~~~~~~--------~~~l~~G~~G~GKttla~~l~~~l~~-~-~~~~~~~~~np~-~~~~~~~~~v 99 (637)
T PRK13765 31 DQVIGQEHAVEVIKKAAKQR--------RHVMMIGSPGTGKSMLAKAMAELLPK-E-ELQDILVYPNPE-DPNNPKIRTV 99 (637)
T ss_pred HHcCChHHHHHHHHHHHHhC--------CeEEEECCCCCcHHHHHHHHHHHcCh-H-hHHHheEeeCCC-cchHHHHHHH
Confidence 46889988888888777532 36889999999999999999886532 2 467778876633 3555666666
Q ss_pred HHHhc
Q 007817 249 LESIT 253 (588)
Q Consensus 249 l~~l~ 253 (588)
+..++
T Consensus 100 ~~~~G 104 (637)
T PRK13765 100 PAGKG 104 (637)
T ss_pred HHhcC
Confidence 65444
No 424
>PRK10875 recD exonuclease V subunit alpha; Provisional
Probab=94.65 E-value=0.16 Score=56.13 Aligned_cols=119 Identities=14% Similarity=0.143 Sum_probs=63.2
Q ss_pred EEEEEEccCCCcHHHHHHHHHcccccccccccEEEEEEeCCcccHHHHHHHHHHHhcCCCCCC---CCHHHHHHHHHHHh
Q 007817 197 CVIPIVGMAGAGKTMLAREVYNDRAVQNFKFDVKAWVSVSDDFDVLRISRALLESITSTNCDF---KTLNEVQVKLRIIV 273 (588)
Q Consensus 197 ~vv~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~il~~l~~~~~~~---~~~~~l~~~l~~~l 273 (588)
++..|.|.+|.||||++..+..........-...+.+..........+...+...+..-.... .........+.+.|
T Consensus 168 ~~~vItGgpGTGKTt~v~~ll~~l~~~~~~~~~~i~l~APTgkAA~rL~e~~~~~~~~~~~~~~~~~~~~~~a~TiHrlL 247 (615)
T PRK10875 168 RISVISGGPGTGKTTTVAKLLAALIQLADGERCRIRLAAPTGKAAARLTESLGKALRQLPLTDEQKKRIPEEASTLHRLL 247 (615)
T ss_pred CeEEEEeCCCCCHHHHHHHHHHHHHHhcCCCCcEEEEECCcHHHHHHHHHHHHhhhhccccchhhhhcCCCchHHHHHHh
Confidence 588999999999999998887654221101124566666655555555555543332110000 00000112222222
Q ss_pred c------------CCc---eeEEeccccccChhHHHHhhcccCCCCCCcEEEEeecchhh
Q 007817 274 D------------GKK---FLLVLDDVWNENYNLWEILKAPFMAGARNSKIIVTTCHSNV 318 (588)
Q Consensus 274 ~------------~k~---~LLVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTTR~~~v 318 (588)
. +.+ -+||+|.+--.+......+...++ +++|+|+---..+.
T Consensus 248 g~~~~~~~~~~~~~~~l~~dvlIvDEaSMvd~~lm~~ll~al~---~~~rlIlvGD~~QL 304 (615)
T PRK10875 248 GAQPGSQRLRYHAGNPLHLDVLVVDEASMVDLPMMARLIDALP---PHARVIFLGDRDQL 304 (615)
T ss_pred CcCCCccchhhccccCCCCCeEEEChHhcccHHHHHHHHHhcc---cCCEEEEecchhhc
Confidence 1 112 289999985545455555555554 46788877644433
No 425
>TIGR01351 adk adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.
Probab=94.65 E-value=0.043 Score=52.24 Aligned_cols=22 Identities=23% Similarity=0.460 Sum_probs=19.6
Q ss_pred EEEEccCCCcHHHHHHHHHccc
Q 007817 199 IPIVGMAGAGKTMLAREVYNDR 220 (588)
Q Consensus 199 v~I~G~gGiGKTtLA~~v~~~~ 220 (588)
|.|+|++|+||||+|+.+....
T Consensus 2 I~i~G~pGsGKsT~a~~La~~~ 23 (210)
T TIGR01351 2 LVLLGPPGSGKGTQAKRIAEKY 23 (210)
T ss_pred EEEECCCCCCHHHHHHHHHHHc
Confidence 6799999999999999998744
No 426
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=94.65 E-value=0.024 Score=49.96 Aligned_cols=23 Identities=26% Similarity=0.531 Sum_probs=20.3
Q ss_pred EEEEEccCCCcHHHHHHHHHccc
Q 007817 198 VIPIVGMAGAGKTMLAREVYNDR 220 (588)
Q Consensus 198 vv~I~G~gGiGKTtLA~~v~~~~ 220 (588)
.++|+|+.|+|||||++.+....
T Consensus 1 ~i~i~GpsGsGKstl~~~L~~~~ 23 (137)
T cd00071 1 LIVLSGPSGVGKSTLLKRLLEEF 23 (137)
T ss_pred CEEEECCCCCCHHHHHHHHHhcC
Confidence 37899999999999999999853
No 427
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=94.65 E-value=0.092 Score=48.57 Aligned_cols=118 Identities=13% Similarity=-0.019 Sum_probs=62.4
Q ss_pred eEEEEEEccCCCcHHHHHHHHHcccccccccccEEEEEEeCC---cccHHHHHHHHH--HHh--cCCCC-CCCC------
Q 007817 196 FCVIPIVGMAGAGKTMLAREVYNDRAVQNFKFDVKAWVSVSD---DFDVLRISRALL--ESI--TSTNC-DFKT------ 261 (588)
Q Consensus 196 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~wv~v~~---~~~~~~~~~~il--~~l--~~~~~-~~~~------ 261 (588)
...|.|+|..|-||||+|..+.-..-..+ + .+..+.+-+ ......++..+- .-. +.... ...+
T Consensus 22 ~g~v~v~~g~GkGKtt~a~g~a~ra~g~G--~-~V~ivQFlKg~~~~GE~~~l~~l~~v~~~~~g~~~~~~~~~~~e~~~ 98 (191)
T PRK05986 22 KGLLIVHTGNGKGKSTAAFGMALRAVGHG--K-KVGVVQFIKGAWSTGERNLLEFGGGVEFHVMGTGFTWETQDRERDIA 98 (191)
T ss_pred CCeEEEECCCCCChHHHHHHHHHHHHHCC--C-eEEEEEEecCCCccCHHHHHhcCCCcEEEECCCCCcccCCCcHHHHH
Confidence 36889999999999999977766543332 2 222333322 223444443321 000 00000 0011
Q ss_pred -HHHHHHHHHHHhcC-CceeEEecccccc---ChhHHHHhhcccCCCCCCcEEEEeecch
Q 007817 262 -LNEVQVKLRIIVDG-KKFLLVLDDVWNE---NYNLWEILKAPFMAGARNSKIIVTTCHS 316 (588)
Q Consensus 262 -~~~l~~~l~~~l~~-k~~LLVlDdv~~~---~~~~~~~l~~~l~~~~~gs~ilvTTR~~ 316 (588)
........++.+.. +-=|||||.+-.. ..-..+.+...+.....+..||+|-|+.
T Consensus 99 ~~~~~~~~a~~~l~~~~ydlvVLDEi~~Al~~gli~~eevi~~L~~rp~~~evVlTGR~~ 158 (191)
T PRK05986 99 AAREGWEEAKRMLADESYDLVVLDELTYALKYGYLDVEEVLEALNARPGMQHVVITGRGA 158 (191)
T ss_pred HHHHHHHHHHHHHhCCCCCEEEEehhhHHHHCCCccHHHHHHHHHcCCCCCEEEEECCCC
Confidence 11122334445544 4459999997321 1123455556665556678999999976
No 428
>PRK14737 gmk guanylate kinase; Provisional
Probab=94.63 E-value=0.034 Score=51.82 Aligned_cols=26 Identities=19% Similarity=0.376 Sum_probs=22.9
Q ss_pred CeEEEEEEccCCCcHHHHHHHHHccc
Q 007817 195 NFCVIPIVGMAGAGKTMLAREVYNDR 220 (588)
Q Consensus 195 ~~~vv~I~G~gGiGKTtLA~~v~~~~ 220 (588)
...++.|+|++|+|||||++.+....
T Consensus 3 ~~~~ivl~GpsG~GK~tl~~~l~~~~ 28 (186)
T PRK14737 3 SPKLFIISSVAGGGKSTIIQALLEEH 28 (186)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhcC
Confidence 45789999999999999999998753
No 429
>PRK14530 adenylate kinase; Provisional
Probab=94.63 E-value=0.024 Score=54.24 Aligned_cols=23 Identities=26% Similarity=0.404 Sum_probs=20.7
Q ss_pred EEEEEccCCCcHHHHHHHHHccc
Q 007817 198 VIPIVGMAGAGKTMLAREVYNDR 220 (588)
Q Consensus 198 vv~I~G~gGiGKTtLA~~v~~~~ 220 (588)
.|.|+|++|+||||+|+.++...
T Consensus 5 ~I~i~G~pGsGKsT~~~~La~~~ 27 (215)
T PRK14530 5 RILLLGAPGAGKGTQSSNLAEEF 27 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 68899999999999999998744
No 430
>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2.7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....
Probab=94.63 E-value=0.042 Score=51.08 Aligned_cols=36 Identities=28% Similarity=0.364 Sum_probs=27.7
Q ss_pred EEEEEEccCCCcHHHHHHHHHcccccccccccEEEEEEe
Q 007817 197 CVIPIVGMAGAGKTMLAREVYNDRAVQNFKFDVKAWVSV 235 (588)
Q Consensus 197 ~vv~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~wv~v 235 (588)
+++.|+|+.|+|||||++.+...... .|...++.+-
T Consensus 3 r~ivl~Gpsg~GK~~l~~~L~~~~~~---~~~~~v~~TT 38 (183)
T PF00625_consen 3 RPIVLVGPSGSGKSTLAKRLIQEFPD---KFGRVVSHTT 38 (183)
T ss_dssp SEEEEESSTTSSHHHHHHHHHHHSTT---TEEEEEEEES
T ss_pred CEEEEECCCCCCHHHHHHHHHHhccc---ccccceeecc
Confidence 68899999999999999999986443 5655554443
No 431
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=94.62 E-value=0.027 Score=53.45 Aligned_cols=24 Identities=38% Similarity=0.479 Sum_probs=21.2
Q ss_pred EEEEEEccCCCcHHHHHHHHHccc
Q 007817 197 CVIPIVGMAGAGKTMLAREVYNDR 220 (588)
Q Consensus 197 ~vv~I~G~gGiGKTtLA~~v~~~~ 220 (588)
.+++|+|.+|+|||||++.+.--.
T Consensus 34 e~lgivGeSGsGKSTL~r~l~Gl~ 57 (252)
T COG1124 34 ETLGIVGESGSGKSTLARLLAGLE 57 (252)
T ss_pred CEEEEEcCCCCCHHHHHHHHhccc
Confidence 589999999999999999997543
No 432
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=94.61 E-value=0.27 Score=55.31 Aligned_cols=25 Identities=28% Similarity=0.391 Sum_probs=21.7
Q ss_pred EEEEEEccCCCcHHHHHHHHHcccc
Q 007817 197 CVIPIVGMAGAGKTMLAREVYNDRA 221 (588)
Q Consensus 197 ~vv~I~G~gGiGKTtLA~~v~~~~~ 221 (588)
..|+|+|..|+|||||++.+..-..
T Consensus 500 e~vaIvG~SGsGKSTL~KLL~gly~ 524 (709)
T COG2274 500 EKVAIVGRSGSGKSTLLKLLLGLYK 524 (709)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCC
Confidence 5899999999999999999976443
No 433
>PRK13947 shikimate kinase; Provisional
Probab=94.59 E-value=0.025 Score=51.78 Aligned_cols=24 Identities=29% Similarity=0.533 Sum_probs=21.2
Q ss_pred EEEEEccCCCcHHHHHHHHHcccc
Q 007817 198 VIPIVGMAGAGKTMLAREVYNDRA 221 (588)
Q Consensus 198 vv~I~G~gGiGKTtLA~~v~~~~~ 221 (588)
.|.|+|++|+||||+|+.+.+...
T Consensus 3 ~I~l~G~~GsGKst~a~~La~~lg 26 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKRVATTLS 26 (171)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHhC
Confidence 488999999999999999998653
No 434
>PRK12339 2-phosphoglycerate kinase; Provisional
Probab=94.59 E-value=0.03 Score=52.54 Aligned_cols=25 Identities=28% Similarity=0.375 Sum_probs=22.4
Q ss_pred eEEEEEEccCCCcHHHHHHHHHccc
Q 007817 196 FCVIPIVGMAGAGKTMLAREVYNDR 220 (588)
Q Consensus 196 ~~vv~I~G~gGiGKTtLA~~v~~~~ 220 (588)
..++.|.|.+|+||||+|+.+....
T Consensus 3 ~~~i~i~G~~G~GKst~a~~l~~~~ 27 (197)
T PRK12339 3 STIHFIGGIPGVGKTSISGYIARHR 27 (197)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhc
Confidence 4689999999999999999998853
No 435
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=94.59 E-value=0.2 Score=51.51 Aligned_cols=25 Identities=32% Similarity=0.414 Sum_probs=22.0
Q ss_pred EEEEEEccCCCcHHHHHHHHHcccc
Q 007817 197 CVIPIVGMAGAGKTMLAREVYNDRA 221 (588)
Q Consensus 197 ~vv~I~G~gGiGKTtLA~~v~~~~~ 221 (588)
.+++|+|+.|+|||||.+.+..-..
T Consensus 32 ei~gIiG~sGaGKSTLlr~I~gl~~ 56 (343)
T TIGR02314 32 QIYGVIGASGAGKSTLIRCVNLLER 56 (343)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCC
Confidence 5899999999999999999977543
No 436
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=94.58 E-value=0.26 Score=54.85 Aligned_cols=25 Identities=32% Similarity=0.369 Sum_probs=21.8
Q ss_pred EEEEEEccCCCcHHHHHHHHHcccc
Q 007817 197 CVIPIVGMAGAGKTMLAREVYNDRA 221 (588)
Q Consensus 197 ~vv~I~G~gGiGKTtLA~~v~~~~~ 221 (588)
..++|+|..|.|||||++.+..-..
T Consensus 362 ~~v~IvG~sGsGKSTLl~lL~gl~~ 386 (588)
T PRK13657 362 QTVAIVGPTGAGKSTLINLLQRVFD 386 (588)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCcC
Confidence 5899999999999999999976543
No 437
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=94.57 E-value=0.029 Score=52.34 Aligned_cols=24 Identities=25% Similarity=0.373 Sum_probs=21.1
Q ss_pred EEEEEEccCCCcHHHHHHHHHccc
Q 007817 197 CVIPIVGMAGAGKTMLAREVYNDR 220 (588)
Q Consensus 197 ~vv~I~G~gGiGKTtLA~~v~~~~ 220 (588)
.+++|+|+.|+|||||++.+....
T Consensus 3 ~~i~l~G~sGsGKsTl~~~l~~~~ 26 (186)
T PRK10078 3 KLIWLMGPSGSGKDSLLAALRQRE 26 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHhccC
Confidence 378999999999999999997743
No 438
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=94.55 E-value=0.02 Score=49.09 Aligned_cols=23 Identities=30% Similarity=0.528 Sum_probs=17.4
Q ss_pred EEEEccCCCcHHHHHHHHHcccc
Q 007817 199 IPIVGMAGAGKTMLAREVYNDRA 221 (588)
Q Consensus 199 v~I~G~gGiGKTtLA~~v~~~~~ 221 (588)
|.|+|.+|+||||+|+.++....
T Consensus 2 vLleg~PG~GKT~la~~lA~~~~ 24 (131)
T PF07726_consen 2 VLLEGVPGVGKTTLAKALARSLG 24 (131)
T ss_dssp EEEES---HHHHHHHHHHHHHTT
T ss_pred EeeECCCccHHHHHHHHHHHHcC
Confidence 67999999999999999998643
No 439
>PRK10923 glnG nitrogen regulation protein NR(I); Provisional
Probab=94.54 E-value=0.11 Score=56.18 Aligned_cols=47 Identities=15% Similarity=0.254 Sum_probs=36.3
Q ss_pred ceeechhhHHHHHHHHhcCCCCCCCCeEEEEEEccCCCcHHHHHHHHHccc
Q 007817 170 AVYGRDEDKARMLEMVLSDDPTTDANFCVIPIVGMAGAGKTMLAREVYNDR 220 (588)
Q Consensus 170 ~~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~ 220 (588)
.++|+.....++.+.+..... ....+.|+|.+|+|||++|+.+.+..
T Consensus 139 ~lig~s~~~~~l~~~~~~~~~----~~~~vli~Ge~GtGK~~lA~~ih~~s 185 (469)
T PRK10923 139 DIIGEAPAMQDVFRIIGRLSR----SSISVLINGESGTGKELVAHALHRHS 185 (469)
T ss_pred cceecCHHHHHHHHHHHHHhc----cCCeEEEEeCCCCcHHHHHHHHHhcC
Confidence 588998888887777654321 23468899999999999999998854
No 440
>PRK06793 fliI flagellum-specific ATP synthase; Validated
Probab=94.54 E-value=0.15 Score=53.51 Aligned_cols=87 Identities=18% Similarity=0.116 Sum_probs=51.0
Q ss_pred eEEEEEEccCCCcHHHHHHHHHcccccccccccEEEEEEeCCcccHHHHHHHHHHHhcCCCC-------CCCCH-----H
Q 007817 196 FCVIPIVGMAGAGKTMLAREVYNDRAVQNFKFDVKAWVSVSDDFDVLRISRALLESITSTNC-------DFKTL-----N 263 (588)
Q Consensus 196 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~il~~l~~~~~-------~~~~~-----~ 263 (588)
-..++|+|..|+|||||++.++..... ...++...-.+.....+++...+..-+.... +.... .
T Consensus 156 Gqri~I~G~sG~GKTtLl~~Ia~~~~~----~~gvI~~iGerg~ev~e~~~~~l~~~gl~~tvvv~~tsd~s~~~r~ra~ 231 (432)
T PRK06793 156 GQKIGIFAGSGVGKSTLLGMIAKNAKA----DINVISLVGERGREVKDFIRKELGEEGMRKSVVVVATSDESHLMQLRAA 231 (432)
T ss_pred CcEEEEECCCCCChHHHHHHHhccCCC----CeEEEEeCCCCcccHHHHHHHHhhhcccceeEEEEECCCCCHHHHHHHH
Confidence 358899999999999999999886532 1223333223345666666655544221110 11111 1
Q ss_pred HHHHHHHHHh--cCCceeEEecccc
Q 007817 264 EVQVKLRIIV--DGKKFLLVLDDVW 286 (588)
Q Consensus 264 ~l~~~l~~~l--~~k~~LLVlDdv~ 286 (588)
.....+.+++ ++++.||++||+-
T Consensus 232 ~~a~~iAEyfr~~G~~VLlilDslT 256 (432)
T PRK06793 232 KLATSIAEYFRDQGNNVLLMMDSVT 256 (432)
T ss_pred HHHHHHHHHHHHcCCcEEEEecchH
Confidence 1222344444 5899999999983
No 441
>PRK14738 gmk guanylate kinase; Provisional
Probab=94.54 E-value=0.037 Score=52.50 Aligned_cols=26 Identities=23% Similarity=0.333 Sum_probs=22.6
Q ss_pred CCeEEEEEEccCCCcHHHHHHHHHcc
Q 007817 194 ANFCVIPIVGMAGAGKTMLAREVYND 219 (588)
Q Consensus 194 ~~~~vv~I~G~gGiGKTtLA~~v~~~ 219 (588)
.....+.|+|++|+|||||++.+.+.
T Consensus 11 ~~~~~ivi~GpsG~GK~tl~~~L~~~ 36 (206)
T PRK14738 11 AKPLLVVISGPSGVGKDAVLARMRER 36 (206)
T ss_pred CCCeEEEEECcCCCCHHHHHHHHHhc
Confidence 35688999999999999999999754
No 442
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=94.51 E-value=0.023 Score=51.64 Aligned_cols=22 Identities=27% Similarity=0.545 Sum_probs=19.3
Q ss_pred EEEEccCCCcHHHHHHHHHccc
Q 007817 199 IPIVGMAGAGKTMLAREVYNDR 220 (588)
Q Consensus 199 v~I~G~gGiGKTtLA~~v~~~~ 220 (588)
+.|+|++|+||||+|+.+.+..
T Consensus 1 i~l~G~~GsGKSTla~~l~~~l 22 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHRL 22 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHhc
Confidence 4689999999999999998753
No 443
>TIGR03496 FliI_clade1 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=94.51 E-value=0.16 Score=53.23 Aligned_cols=84 Identities=19% Similarity=0.176 Sum_probs=48.7
Q ss_pred EEEEEEccCCCcHHHHHHHHHcccccccccccEEEEEEeCCc-ccHHHHHHHHHHHhcCCC-------CCCCCHH-----
Q 007817 197 CVIPIVGMAGAGKTMLAREVYNDRAVQNFKFDVKAWVSVSDD-FDVLRISRALLESITSTN-------CDFKTLN----- 263 (588)
Q Consensus 197 ~vv~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~wv~v~~~-~~~~~~~~~il~~l~~~~-------~~~~~~~----- 263 (588)
..++|+|..|+|||||.+.+.+... .+..+...+... -.+.++...+...-.... .+.....
T Consensus 138 q~~~I~G~sG~GKTtLl~~I~~~~~-----~~~~vi~~iGer~~ev~e~~~~~~~~~~~~~tvvv~~tsd~~~~~r~~a~ 212 (411)
T TIGR03496 138 QRMGIFAGSGVGKSTLLGMMARYTE-----ADVVVVGLIGERGREVKEFIEDILGEEGLARSVVVAATADESPLMRLRAA 212 (411)
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCC-----CCEEEEEEEecChHHHHHHHHHHhhCCCcceEEEEEECCCCCHHHHHHHH
Confidence 5789999999999999998887542 234444555443 334555555443311110 0111111
Q ss_pred HHHHHHHHHh--cCCceeEEeccc
Q 007817 264 EVQVKLRIIV--DGKKFLLVLDDV 285 (588)
Q Consensus 264 ~l~~~l~~~l--~~k~~LLVlDdv 285 (588)
.....+.+++ +++.+||++||+
T Consensus 213 ~~a~tiAEyfr~~G~~Vll~~Dsl 236 (411)
T TIGR03496 213 FYATAIAEYFRDQGKDVLLLMDSL 236 (411)
T ss_pred HHHHHHHHHHHHCCCCEEEEEeCh
Confidence 1122344444 589999999998
No 444
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=94.50 E-value=0.034 Score=46.26 Aligned_cols=21 Identities=43% Similarity=0.496 Sum_probs=19.6
Q ss_pred EEEEEEccCCCcHHHHHHHHH
Q 007817 197 CVIPIVGMAGAGKTMLAREVY 217 (588)
Q Consensus 197 ~vv~I~G~gGiGKTtLA~~v~ 217 (588)
..++|+|+.|+|||||+..+.
T Consensus 16 e~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 16 VGVLITGDSGIGKTELALELI 36 (107)
T ss_pred EEEEEEcCCCCCHHHHHHHhh
Confidence 689999999999999999986
No 445
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=94.50 E-value=0.085 Score=54.33 Aligned_cols=110 Identities=11% Similarity=0.101 Sum_probs=58.8
Q ss_pred EEEEEEccCCCcHHHHHHHHHcccccccccccEEEEEEeCCcccHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhcCC
Q 007817 197 CVIPIVGMAGAGKTMLAREVYNDRAVQNFKFDVKAWVSVSDDFDVLRISRALLESITSTNCDFKTLNEVQVKLRIIVDGK 276 (588)
Q Consensus 197 ~vv~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~il~~l~~~~~~~~~~~~l~~~l~~~l~~k 276 (588)
..+.|.|+.|+||||+.+.+.+.... .....++. +.++.... .... ..+........+.......++..++..
T Consensus 123 g~ili~G~tGSGKTT~l~al~~~i~~---~~~~~i~t-iEdp~E~~--~~~~-~~~i~q~evg~~~~~~~~~l~~~lr~~ 195 (343)
T TIGR01420 123 GLILVTGPTGSGKSTTLASMIDYINK---NAAGHIIT-IEDPIEYV--HRNK-RSLINQREVGLDTLSFANALRAALRED 195 (343)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhhCc---CCCCEEEE-EcCChhhh--ccCc-cceEEccccCCCCcCHHHHHHHhhccC
Confidence 68999999999999999998875431 22334432 33321110 0000 000000000111223455677788889
Q ss_pred ceeEEeccccccChhHHHHhhcccCCCCCCcEEEEeecchhh
Q 007817 277 KFLLVLDDVWNENYNLWEILKAPFMAGARNSKIIVTTCHSNV 318 (588)
Q Consensus 277 ~~LLVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTTR~~~v 318 (588)
+=.|++|.+.+ .+.+...... ...|..|+.|....+.
T Consensus 196 pd~i~vgEird--~~~~~~~l~a---a~tGh~v~~T~Ha~~~ 232 (343)
T TIGR01420 196 PDVILIGEMRD--LETVELALTA---AETGHLVFGTLHTNSA 232 (343)
T ss_pred CCEEEEeCCCC--HHHHHHHHHH---HHcCCcEEEEEcCCCH
Confidence 99999999953 3444432222 2345556666654433
No 446
>PRK09099 type III secretion system ATPase; Provisional
Probab=94.50 E-value=0.16 Score=53.57 Aligned_cols=86 Identities=16% Similarity=0.111 Sum_probs=50.1
Q ss_pred eEEEEEEccCCCcHHHHHHHHHcccccccccccEEEEEEeCCcccHHHHHHHHHHHhcCCCC-------CCCCHHH----
Q 007817 196 FCVIPIVGMAGAGKTMLAREVYNDRAVQNFKFDVKAWVSVSDDFDVLRISRALLESITSTNC-------DFKTLNE---- 264 (588)
Q Consensus 196 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~il~~l~~~~~-------~~~~~~~---- 264 (588)
-..++|.|..|+|||||++.+...... -..+++..-.....+.++.+.+...-..... +......
T Consensus 163 Gq~~~I~G~sG~GKTtLl~~ia~~~~~----d~~vi~~iGer~~ev~ef~~~~~~~~~l~rtvvv~~tsd~p~~~r~~a~ 238 (441)
T PRK09099 163 GQRMGIFAPAGVGKSTLMGMFARGTQC----DVNVIALIGERGREVREFIELILGEDGMARSVVVCATSDRSSIERAKAA 238 (441)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCC----CeEEEEEEccChHHHHHHHHHHhhcCCcceEEEEEECCCCCHHHHHHHH
Confidence 368899999999999999999875432 1234443333444555555555443211110 1111111
Q ss_pred -HHHHHHHHh--cCCceeEEeccc
Q 007817 265 -VQVKLRIIV--DGKKFLLVLDDV 285 (588)
Q Consensus 265 -l~~~l~~~l--~~k~~LLVlDdv 285 (588)
....+.+++ +++.+||++||+
T Consensus 239 ~~a~tiAEyfrd~G~~VLl~~Dsl 262 (441)
T PRK09099 239 YVATAIAEYFRDRGLRVLLMMDSL 262 (441)
T ss_pred HHHHHHHHHHHHcCCCEEEeccch
Confidence 122344444 588999999998
No 447
>cd03285 ABC_MSH2_euk MutS2 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=94.47 E-value=0.039 Score=52.95 Aligned_cols=120 Identities=13% Similarity=0.194 Sum_probs=58.9
Q ss_pred CeEEEEEEccCCCcHHHHHHHHHcccccccccccEEEEEEeCCcccHHHHHHHHHHHhcCCCC---CCCCHHHHHHHHHH
Q 007817 195 NFCVIPIVGMAGAGKTMLAREVYNDRAVQNFKFDVKAWVSVSDDFDVLRISRALLESITSTNC---DFKTLNEVQVKLRI 271 (588)
Q Consensus 195 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~il~~l~~~~~---~~~~~~~l~~~l~~ 271 (588)
+..++.|+|+.|.|||||.+.+..-.-. +..-++|++... .......++..++.... .......-...+..
T Consensus 29 ~~~~~~l~G~n~~GKstll~~i~~~~~l----a~~g~~vpa~~~--~~~~~~~il~~~~l~d~~~~~lS~~~~e~~~~a~ 102 (222)
T cd03285 29 KSRFLIITGPNMGGKSTYIRQIGVIVLM----AQIGCFVPCDSA--DIPIVDCILARVGASDSQLKGVSTFMAEMLETAA 102 (222)
T ss_pred CCeEEEEECCCCCChHHHHHHHHHHHHH----HHhCCCcCcccE--EEeccceeEeeeccccchhcCcChHHHHHHHHHH
Confidence 3479999999999999999887643111 111112222210 11122223333322211 11222222223333
Q ss_pred Hh--cCCceeEEeccccc---c-Ch--hHHHHhhcccCCCCCCcEEEEeecchhhhhhc
Q 007817 272 IV--DGKKFLLVLDDVWN---E-NY--NLWEILKAPFMAGARNSKIIVTTCHSNVASMM 322 (588)
Q Consensus 272 ~l--~~k~~LLVlDdv~~---~-~~--~~~~~l~~~l~~~~~gs~ilvTTR~~~v~~~~ 322 (588)
.+ -..+-|++||..-. . +. ..|..+ ..+.. ..|+.+|+||...++...+
T Consensus 103 il~~~~~~sLvLLDEp~~gT~~lD~~~~~~~il-~~l~~-~~~~~vlisTH~~el~~~~ 159 (222)
T cd03285 103 ILKSATENSLIIIDELGRGTSTYDGFGLAWAIA-EYIAT-QIKCFCLFATHFHELTALA 159 (222)
T ss_pred HHHhCCCCeEEEEecCcCCCChHHHHHHHHHHH-HHHHh-cCCCeEEEEechHHHHHHh
Confidence 34 35688999999832 1 11 122222 22222 2467899999876665543
No 448
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=94.47 E-value=0.1 Score=56.46 Aligned_cols=54 Identities=19% Similarity=0.226 Sum_probs=36.9
Q ss_pred HHHHHHHHhcCCCCCCCCeEEEEEEccCCCcHHHHHHHHHcccccccccccEEEEEEeCCc
Q 007817 178 KARMLEMVLSDDPTTDANFCVIPIVGMAGAGKTMLAREVYNDRAVQNFKFDVKAWVSVSDD 238 (588)
Q Consensus 178 ~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~wv~v~~~ 238 (588)
...+-++|...- ..-.++.|.|++|+|||||+.++......+ -..+++++..++
T Consensus 249 i~~lD~~lgGG~----~~gs~~li~G~~G~GKt~l~~~f~~~~~~~---ge~~~y~s~eEs 302 (484)
T TIGR02655 249 VVRLDEMCGGGF----FKDSIILATGATGTGKTLLVSKFLENACAN---KERAILFAYEES 302 (484)
T ss_pred hHhHHHHhcCCc----cCCcEEEEECCCCCCHHHHHHHHHHHHHHC---CCeEEEEEeeCC
Confidence 344455554322 345799999999999999999998865332 245677776654
No 449
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=94.46 E-value=0.88 Score=47.32 Aligned_cols=24 Identities=21% Similarity=0.191 Sum_probs=21.1
Q ss_pred EEEEEEccCCCcHHHHHHHHHccc
Q 007817 197 CVIPIVGMAGAGKTMLAREVYNDR 220 (588)
Q Consensus 197 ~vv~I~G~gGiGKTtLA~~v~~~~ 220 (588)
+=-.++||+|.|||++..++++..
T Consensus 236 RGYLLYGPPGTGKSS~IaAmAn~L 259 (457)
T KOG0743|consen 236 RGYLLYGPPGTGKSSFIAAMANYL 259 (457)
T ss_pred ccceeeCCCCCCHHHHHHHHHhhc
Confidence 455789999999999999999965
No 450
>TIGR00176 mobB molybdopterin-guanine dinucleotide biosynthesis protein MobB. This molybdenum cofactor biosynthesis enzyme is similar to the urease accessory protein UreG and to the hydrogenase accessory protein HypB, both GTP hydrolases involved in loading nickel into the metallocenters of their respective target enzymes.
Probab=94.45 E-value=0.037 Score=49.85 Aligned_cols=34 Identities=26% Similarity=0.378 Sum_probs=26.1
Q ss_pred EEEEEccCCCcHHHHHHHHHcccccccccccEEEEE
Q 007817 198 VIPIVGMAGAGKTMLAREVYNDRAVQNFKFDVKAWV 233 (588)
Q Consensus 198 vv~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~wv 233 (588)
+++|+|+.|+|||||+..+....+.+ .+...+.-
T Consensus 1 vi~i~G~~gsGKTtl~~~l~~~l~~~--G~~V~viK 34 (155)
T TIGR00176 1 VLQIVGPKNSGKTTLIERLVKALKAR--GYRVATIK 34 (155)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHhc--CCeEEEEe
Confidence 57899999999999999999976543 34444443
No 451
>PRK13975 thymidylate kinase; Provisional
Probab=94.44 E-value=0.032 Score=52.41 Aligned_cols=25 Identities=28% Similarity=0.348 Sum_probs=22.5
Q ss_pred EEEEEEccCCCcHHHHHHHHHcccc
Q 007817 197 CVIPIVGMAGAGKTMLAREVYNDRA 221 (588)
Q Consensus 197 ~vv~I~G~gGiGKTtLA~~v~~~~~ 221 (588)
..|+|.|+.|+||||+|+.+.+...
T Consensus 3 ~~I~ieG~~GsGKtT~~~~L~~~l~ 27 (196)
T PRK13975 3 KFIVFEGIDGSGKTTQAKLLAEKLN 27 (196)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 5899999999999999999998654
No 452
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=94.42 E-value=0.094 Score=54.48 Aligned_cols=28 Identities=21% Similarity=0.274 Sum_probs=24.0
Q ss_pred CeEEEEEEccCCCcHHHHHHHHHccccc
Q 007817 195 NFCVIPIVGMAGAGKTMLAREVYNDRAV 222 (588)
Q Consensus 195 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~ 222 (588)
....+.|.|+||.|||+|.+.+.+..+.
T Consensus 21 ~~~~~fv~G~~GtGKs~l~~~i~~~~~~ 48 (364)
T PF05970_consen 21 EGLNFFVTGPAGTGKSFLIKAIIDYLRS 48 (364)
T ss_pred CCcEEEEEcCCCCChhHHHHHHHHHhcc
Confidence 3468899999999999999999887654
No 453
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=94.42 E-value=0.035 Score=51.62 Aligned_cols=38 Identities=18% Similarity=0.260 Sum_probs=28.4
Q ss_pred EEEEEccCCCcHHHHHHHHHcccccccccccEEEEEEeCCc
Q 007817 198 VIPIVGMAGAGKTMLAREVYNDRAVQNFKFDVKAWVSVSDD 238 (588)
Q Consensus 198 vv~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~wv~v~~~ 238 (588)
++.|.|++|+|||+||.++....... =..++|++...+
T Consensus 1 ~~li~G~~G~GKT~l~~~~~~~~~~~---g~~v~~~s~e~~ 38 (187)
T cd01124 1 STLLSGGPGTGKTTFALQFLYAGLAR---GEPGLYVTLEES 38 (187)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHHC---CCcEEEEECCCC
Confidence 36799999999999999987765322 245778887654
No 454
>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT. This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.
Probab=94.42 E-value=0.25 Score=51.12 Aligned_cols=24 Identities=29% Similarity=0.490 Sum_probs=21.5
Q ss_pred EEEEEEccCCCcHHHHHHHHHccc
Q 007817 197 CVIPIVGMAGAGKTMLAREVYNDR 220 (588)
Q Consensus 197 ~vv~I~G~gGiGKTtLA~~v~~~~ 220 (588)
.+++|+|+.|.|||||.+.++--.
T Consensus 32 e~~~llGpsGsGKSTLLr~iaGl~ 55 (362)
T TIGR03258 32 ELLALIGKSGCGKTTLLRAIAGFV 55 (362)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 589999999999999999998643
No 455
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=94.41 E-value=0.046 Score=53.95 Aligned_cols=42 Identities=26% Similarity=0.335 Sum_probs=34.9
Q ss_pred CCeEEEEEEccCCCcHHHHHHHHHcccccccccccEEEEEEeCCc
Q 007817 194 ANFCVIPIVGMAGAGKTMLAREVYNDRAVQNFKFDVKAWVSVSDD 238 (588)
Q Consensus 194 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~wv~v~~~ 238 (588)
+.-+++.|+|.+|+|||+++.++...... ....++||+....
T Consensus 21 p~g~~~lI~G~pGsGKT~f~~qfl~~~~~---~ge~vlyvs~~e~ 62 (260)
T COG0467 21 PRGSVVLITGPPGTGKTIFALQFLYEGAR---EGEPVLYVSTEES 62 (260)
T ss_pred cCCcEEEEEcCCCCcHHHHHHHHHHHHHh---cCCcEEEEEecCC
Confidence 35589999999999999999999886543 4678999998865
No 456
>cd01132 F1_ATPase_alpha F1 ATP synthase alpha, central domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The alpha subunit of the F1 ATP synthase can bind nucleotides, but is non-catalytic.
Probab=94.38 E-value=0.16 Score=49.90 Aligned_cols=84 Identities=20% Similarity=0.250 Sum_probs=48.6
Q ss_pred EEEEEEccCCCcHHHHH-HHHHcccccccccccEE-EEEEeCCcc-cHHHHHHHHHHHhcCCC-------CCCCCHHH--
Q 007817 197 CVIPIVGMAGAGKTMLA-REVYNDRAVQNFKFDVK-AWVSVSDDF-DVLRISRALLESITSTN-------CDFKTLNE-- 264 (588)
Q Consensus 197 ~vv~I~G~gGiGKTtLA-~~v~~~~~~~~~~f~~~-~wv~v~~~~-~~~~~~~~il~~l~~~~-------~~~~~~~~-- 264 (588)
+-++|.|.+|+|||+|| ..+.+.. .-+.+ +++-+.+.. ...++.+++.+.-.... .+......
T Consensus 70 Qr~~Ifg~~g~GKt~L~l~~i~~~~-----~~~v~~V~~~iGer~~ev~e~~~~~~~~~~~~~tvvv~~t~d~~~~~r~~ 144 (274)
T cd01132 70 QRELIIGDRQTGKTAIAIDTIINQK-----GKKVYCIYVAIGQKASTVAQVVKTLEEHGAMEYTIVVAATASDPAPLQYL 144 (274)
T ss_pred CEEEeeCCCCCCccHHHHHHHHHhc-----CCCeEEEEEecccchHHHHHHHHHHHhcCccceeEEEEeCCCCchhHHHH
Confidence 57899999999999996 5665532 23444 566666553 45566666654321111 01111111
Q ss_pred ---HHHHHHHHh--cCCceeEEeccc
Q 007817 265 ---VQVKLRIIV--DGKKFLLVLDDV 285 (588)
Q Consensus 265 ---l~~~l~~~l--~~k~~LLVlDdv 285 (588)
..-.+.+++ +++..||++||+
T Consensus 145 a~~~a~aiAE~fr~~G~~Vlvl~Dsl 170 (274)
T cd01132 145 APYTGCAMGEYFMDNGKHALIIYDDL 170 (274)
T ss_pred HHHHHHHHHHHHHHCCCCEEEEEcCh
Confidence 112333333 589999999999
No 457
>cd02029 PRK_like Phosphoribulokinase-like (PRK-like) is a family of proteins similar to phosphoribulokinase (PRK), the enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. PRK catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=94.38 E-value=0.15 Score=49.78 Aligned_cols=77 Identities=18% Similarity=0.173 Sum_probs=43.9
Q ss_pred EEEEEccCCCcHHHHHHHHHcccccccccccEEEEEEeCCcc--cHHHHHHHHHHH----hcCCC--CCCCCHHHHHHHH
Q 007817 198 VIPIVGMAGAGKTMLAREVYNDRAVQNFKFDVKAWVSVSDDF--DVLRISRALLES----ITSTN--CDFKTLNEVQVKL 269 (588)
Q Consensus 198 vv~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~wv~v~~~~--~~~~~~~~il~~----l~~~~--~~~~~~~~l~~~l 269 (588)
+|+|.|.+|+||||+++.+.+.....+ ..+..++...-. +-...-..+... .+-.. ++..+.+.+...+
T Consensus 1 IIgItG~SGSGKTTv~~~l~~~l~~~g---~~v~vI~~D~yyr~~r~~~~~~~~~a~~~~~nfdHf~PeAnd~dlL~~~l 77 (277)
T cd02029 1 VIAVTGSSGAGTTTVKRAFEHIFAREG---IHPAVVEGDSFHRYERMEMKMAIAEALDAGRNFSHFGPEANLFDLLEELF 77 (277)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHhcC---CceEEEeccccccCCchhHHHHHHHHhhcCCCCCCCCcccccHHHHHHHH
Confidence 589999999999999999887554322 123334332221 222222222221 11122 4566777788888
Q ss_pred HHHhcCCc
Q 007817 270 RIIVDGKK 277 (588)
Q Consensus 270 ~~~l~~k~ 277 (588)
+.+.+++.
T Consensus 78 ~~L~~g~~ 85 (277)
T cd02029 78 RTYGETGR 85 (277)
T ss_pred HHHHcCCC
Confidence 87777654
No 458
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=94.38 E-value=0.059 Score=54.61 Aligned_cols=110 Identities=12% Similarity=0.082 Sum_probs=54.3
Q ss_pred EEEEEEccCCCcHHHHHHHHHcccccccccccEEEEEEeCCcccHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhcCC
Q 007817 197 CVIPIVGMAGAGKTMLAREVYNDRAVQNFKFDVKAWVSVSDDFDVLRISRALLESITSTNCDFKTLNEVQVKLRIIVDGK 276 (588)
Q Consensus 197 ~vv~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~il~~l~~~~~~~~~~~~l~~~l~~~l~~k 276 (588)
..+.|+|..|+|||||++.+........ .++.+.-........ .....-...........-.....+...++..
T Consensus 145 ~~ili~G~tGsGKTTll~al~~~~~~~~----~iv~ied~~El~~~~--~~~~~l~~~~~~~~~~~~~~~~~l~~~Lr~~ 218 (308)
T TIGR02788 145 KNIIISGGTGSGKTTFLKSLVDEIPKDE----RIITIEDTREIFLPH--PNYVHLFYSKGGQGLAKVTPKDLLQSCLRMR 218 (308)
T ss_pred CEEEEECCCCCCHHHHHHHHHccCCccc----cEEEEcCccccCCCC--CCEEEEEecCCCCCcCccCHHHHHHHHhcCC
Confidence 6899999999999999999887543211 222221111111100 0000000000000111112344566677888
Q ss_pred ceeEEeccccccChhHHHHhhcccCCCCCCcEEEEeecchh
Q 007817 277 KFLLVLDDVWNENYNLWEILKAPFMAGARNSKIIVTTCHSN 317 (588)
Q Consensus 277 ~~LLVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTTR~~~ 317 (588)
+=.|++|.+.. .+.++.+ ..+..+.. -++.|+...+
T Consensus 219 pd~ii~gE~r~--~e~~~~l-~a~~~g~~--~~i~T~Ha~~ 254 (308)
T TIGR02788 219 PDRIILGELRG--DEAFDFI-RAVNTGHP--GSITTLHAGS 254 (308)
T ss_pred CCeEEEeccCC--HHHHHHH-HHHhcCCC--eEEEEEeCCC
Confidence 88999999964 3445433 33322221 2466665444
No 459
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=94.38 E-value=0.031 Score=50.09 Aligned_cols=22 Identities=41% Similarity=0.623 Sum_probs=20.0
Q ss_pred EEEEccCCCcHHHHHHHHHccc
Q 007817 199 IPIVGMAGAGKTMLAREVYNDR 220 (588)
Q Consensus 199 v~I~G~gGiGKTtLA~~v~~~~ 220 (588)
|.|+|++|+||||+|+.+....
T Consensus 2 i~l~G~~GsGKstla~~la~~l 23 (154)
T cd00464 2 IVLIGMMGAGKTTVGRLLAKAL 23 (154)
T ss_pred EEEEcCCCCCHHHHHHHHHHHh
Confidence 6899999999999999998754
No 460
>TIGR01039 atpD ATP synthase, F1 beta subunit. The sequences of ATP synthase F1 alpha and beta subunits are related and both contain a nucleotide-binding site for ATP and ADP. They have a common amino terminal domain but vary at the C-terminus. The beta chain has catalytic activity, while the alpha chain is a regulatory subunit. Proton translocating ATP synthase, F1 beta subunit is homologous to proton translocating ATP synthase archaeal/vacuolar(V1), A subunit.
Probab=94.37 E-value=0.18 Score=53.13 Aligned_cols=88 Identities=20% Similarity=0.231 Sum_probs=54.8
Q ss_pred eEEEEEEccCCCcHHHHHHHHHcccccccccccEEEEEEeCCcc-cHHHHHHHHHHHhcCCC------C-CCCCHHH---
Q 007817 196 FCVIPIVGMAGAGKTMLAREVYNDRAVQNFKFDVKAWVSVSDDF-DVLRISRALLESITSTN------C-DFKTLNE--- 264 (588)
Q Consensus 196 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~wv~v~~~~-~~~~~~~~il~~l~~~~------~-~~~~~~~--- 264 (588)
-+-++|.|.+|+|||||+..+..+.... +-..++++-+++.. .+.+++.++...=.... . +......
T Consensus 143 GQr~~If~~~G~GKt~L~~~~~~~~~~~--~~~v~V~alIGER~rEv~ef~~~~~~~~~l~rtvvV~atsd~p~~~R~~a 220 (461)
T TIGR01039 143 GGKIGLFGGAGVGKTVLIQELINNIAKE--HGGYSVFAGVGERTREGNDLYHEMKESGVIDKTALVYGQMNEPPGARMRV 220 (461)
T ss_pred CCEEEeecCCCCChHHHHHHHHHHHHhc--CCCeEEEEEecCCchHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHHH
Confidence 3578999999999999999988764322 23467777776543 45666666654311111 0 1111111
Q ss_pred --HHHHHHHHh---cCCceeEEeccc
Q 007817 265 --VQVKLRIIV---DGKKFLLVLDDV 285 (588)
Q Consensus 265 --l~~~l~~~l---~~k~~LLVlDdv 285 (588)
....+.+++ +++.+||++||+
T Consensus 221 ~~~a~tiAEyfrd~~G~~VLll~Dsl 246 (461)
T TIGR01039 221 ALTGLTMAEYFRDEQGQDVLLFIDNI 246 (461)
T ss_pred HHHHHHHHHHHHHhcCCeeEEEecch
Confidence 222455565 468999999999
No 461
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=94.37 E-value=0.17 Score=52.02 Aligned_cols=88 Identities=14% Similarity=0.113 Sum_probs=48.9
Q ss_pred eEEEEEEccCCCcHHHHHHHHHcccccccccccEEEEEEeCCc-ccHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhc
Q 007817 196 FCVIPIVGMAGAGKTMLAREVYNDRAVQNFKFDVKAWVSVSDD-FDVLRISRALLESITSTNCDFKTLNEVQVKLRIIVD 274 (588)
Q Consensus 196 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~wv~v~~~-~~~~~~~~~il~~l~~~~~~~~~~~~l~~~l~~~l~ 274 (588)
.++++++|+.|+||||-..+++....... .-..+..|+...- ....+-++..++-++.+..-..+..++...+... +
T Consensus 203 ~~vi~LVGPTGVGKTTTlAKLAar~~~~~-~~~kVaiITtDtYRIGA~EQLk~Ya~im~vp~~vv~~~~el~~ai~~l-~ 280 (407)
T COG1419 203 KRVIALVGPTGVGKTTTLAKLAARYVMLK-KKKKVAIITTDTYRIGAVEQLKTYADIMGVPLEVVYSPKELAEAIEAL-R 280 (407)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHhhc-cCcceEEEEeccchhhHHHHHHHHHHHhCCceEEecCHHHHHHHHHHh-h
Confidence 58999999999999964444433322111 2234555655432 2334445555566666555556666666555443 3
Q ss_pred CCceeEEecccc
Q 007817 275 GKKFLLVLDDVW 286 (588)
Q Consensus 275 ~k~~LLVlDdv~ 286 (588)
+. =+|.+|-+-
T Consensus 281 ~~-d~ILVDTaG 291 (407)
T COG1419 281 DC-DVILVDTAG 291 (407)
T ss_pred cC-CEEEEeCCC
Confidence 33 455566553
No 462
>PLN02200 adenylate kinase family protein
Probab=94.36 E-value=0.036 Score=53.65 Aligned_cols=25 Identities=16% Similarity=0.296 Sum_probs=22.2
Q ss_pred CeEEEEEEccCCCcHHHHHHHHHcc
Q 007817 195 NFCVIPIVGMAGAGKTMLAREVYND 219 (588)
Q Consensus 195 ~~~vv~I~G~gGiGKTtLA~~v~~~ 219 (588)
.+.+|.|.|++|+||||+|+.+.+.
T Consensus 42 ~~~ii~I~G~PGSGKsT~a~~La~~ 66 (234)
T PLN02200 42 TPFITFVLGGPGSGKGTQCEKIVET 66 (234)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHH
Confidence 4578999999999999999999874
No 463
>COG2019 AdkA Archaeal adenylate kinase [Nucleotide transport and metabolism]
Probab=94.35 E-value=0.039 Score=49.12 Aligned_cols=25 Identities=28% Similarity=0.422 Sum_probs=21.9
Q ss_pred eEEEEEEccCCCcHHHHHHHHHccc
Q 007817 196 FCVIPIVGMAGAGKTMLAREVYNDR 220 (588)
Q Consensus 196 ~~vv~I~G~gGiGKTtLA~~v~~~~ 220 (588)
..+++|+|.+|+||||+.+.+....
T Consensus 4 ~kvvvitGVpGvGKTTVl~~~~~~l 28 (189)
T COG2019 4 RKVVVITGVPGVGKTTVLKIALKEL 28 (189)
T ss_pred ceEEEEEcCCCCChHHHHHHHHHHH
Confidence 5899999999999999998877654
No 464
>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=94.35 E-value=0.94 Score=40.88 Aligned_cols=83 Identities=17% Similarity=0.150 Sum_probs=51.3
Q ss_pred cHHHHHHHHHHHhcCCCC------CCCCHHHHHHHHHHHhcCCceeEEeccc----cccChhHHHHhhcccCCCCCCcEE
Q 007817 240 DVLRISRALLESITSTNC------DFKTLNEVQVKLRIIVDGKKFLLVLDDV----WNENYNLWEILKAPFMAGARNSKI 309 (588)
Q Consensus 240 ~~~~~~~~il~~l~~~~~------~~~~~~~l~~~l~~~l~~k~~LLVlDdv----~~~~~~~~~~l~~~l~~~~~gs~i 309 (588)
+.....+.++++++.... .....++..-.+.+.+...+-+|+-|.- +........++.-.+ ....|+.+
T Consensus 122 ~~~~~A~~lL~~vGLg~Rl~HyP~qLSGGEQQRVAiARAfa~~P~vLfADEPTGNLD~~Tg~~iaDLlF~l-nre~G~Tl 200 (228)
T COG4181 122 DSRAGAKALLEAVGLGKRLTHYPAQLSGGEQQRVALARAFAGRPDVLFADEPTGNLDRATGDKIADLLFAL-NRERGTTL 200 (228)
T ss_pred cHHHHHHHHHHHhCcccccccCccccCchHHHHHHHHHHhcCCCCEEeccCCCCCcchhHHHHHHHHHHHH-hhhcCceE
Confidence 455667777877765432 2233455555788888899999998853 222222333333222 23468888
Q ss_pred EEeecchhhhhhcc
Q 007817 310 IVTTCHSNVASMMG 323 (588)
Q Consensus 310 lvTTR~~~v~~~~~ 323 (588)
++.|.++.++..|.
T Consensus 201 VlVTHD~~LA~Rc~ 214 (228)
T COG4181 201 VLVTHDPQLAARCD 214 (228)
T ss_pred EEEeCCHHHHHhhh
Confidence 88888998887654
No 465
>KOG0924 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=94.35 E-value=0.32 Score=52.60 Aligned_cols=115 Identities=24% Similarity=0.293 Sum_probs=64.3
Q ss_pred EEEEEEccCCCcHHH-HHHHHHcccccccccccEEEEEEeCCcccHHHHHHHHHHHhcCCCCC----------C------
Q 007817 197 CVIPIVGMAGAGKTM-LAREVYNDRAVQNFKFDVKAWVSVSDDFDVLRISRALLESITSTNCD----------F------ 259 (588)
Q Consensus 197 ~vv~I~G~gGiGKTt-LA~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~il~~l~~~~~~----------~------ 259 (588)
.||.|+|..|+|||| |++.+|.+--. -+..+=++-........+.+.+.+.++..-.+ .
T Consensus 372 ~vvvivgETGSGKTTQl~QyL~edGY~----~~GmIGcTQPRRvAAiSVAkrVa~EM~~~lG~~VGYsIRFEdvT~~~T~ 447 (1042)
T KOG0924|consen 372 QVVVIVGETGSGKTTQLAQYLYEDGYA----DNGMIGCTQPRRVAAISVAKRVAEEMGVTLGDTVGYSIRFEDVTSEDTK 447 (1042)
T ss_pred cEEEEEecCCCCchhhhHHHHHhcccc----cCCeeeecCchHHHHHHHHHHHHHHhCCccccccceEEEeeecCCCcee
Confidence 699999999999987 77777775322 12333222233334556667777777543221 0
Q ss_pred ----CCHHHHHHHHHHHhcCCceeEEeccccccChh---HHHHhhcccCCCCCCcEEEEeecch
Q 007817 260 ----KTLNEVQVKLRIIVDGKKFLLVLDDVWNENYN---LWEILKAPFMAGARNSKIIVTTCHS 316 (588)
Q Consensus 260 ----~~~~~l~~~l~~~l~~k~~LLVlDdv~~~~~~---~~~~l~~~l~~~~~gs~ilvTTR~~ 316 (588)
.+.--+.+.|....-.|--.||+|..++.+.. ....++..+ .....-++||||-.-
T Consensus 448 IkymTDGiLLrEsL~d~~L~kYSviImDEAHERslNtDilfGllk~~l-arRrdlKliVtSATm 510 (1042)
T KOG0924|consen 448 IKYMTDGILLRESLKDRDLDKYSVIIMDEAHERSLNTDILFGLLKKVL-ARRRDLKLIVTSATM 510 (1042)
T ss_pred EEEeccchHHHHHhhhhhhhheeEEEechhhhcccchHHHHHHHHHHH-HhhccceEEEeeccc
Confidence 11122333344333445568999999764321 122223222 233477999999654
No 466
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=94.33 E-value=0.099 Score=50.21 Aligned_cols=52 Identities=21% Similarity=0.159 Sum_probs=28.5
Q ss_pred EEEEEccCCCcHHHHHHHHHcccc-----cccccccEEEEEEeCCcccHHHHHHHHHH
Q 007817 198 VIPIVGMAGAGKTMLAREVYNDRA-----VQNFKFDVKAWVSVSDDFDVLRISRALLE 250 (588)
Q Consensus 198 vv~I~G~gGiGKTtLA~~v~~~~~-----~~~~~f~~~~wv~v~~~~~~~~~~~~il~ 250 (588)
+..|+|++|.||||++..+..... ... .....+-++......+..++..+.+
T Consensus 19 ~~~i~GpPGTGKT~~l~~~i~~~~~~~~~~~~-~~~~~il~~~~sN~avd~~~~~l~~ 75 (236)
T PF13086_consen 19 ITLIQGPPGTGKTTTLASIIAQLLQRFKSRSA-DRGKKILVVSPSNAAVDNILERLKK 75 (236)
T ss_dssp -EEEE-STTSSHHHHHHHHHHHH-------HC-CCSS-EEEEESSHHHHHHHHHHHHC
T ss_pred CEEEECCCCCChHHHHHHHHHHhccchhhhhh-hccccceeecCCchhHHHHHHHHHh
Confidence 789999999999987766666541 111 2334444444444445555554443
No 467
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=94.33 E-value=0.058 Score=48.54 Aligned_cols=36 Identities=19% Similarity=0.346 Sum_probs=30.0
Q ss_pred hhHHHHHHHHhcCCCCCCCCeEEEEEEccCCCcHHHHHHHHHccc
Q 007817 176 EDKARMLEMVLSDDPTTDANFCVIPIVGMAGAGKTMLAREVYNDR 220 (588)
Q Consensus 176 ~e~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~ 220 (588)
..+++|.++|.. ++++++|..|+|||||...+....
T Consensus 24 ~g~~~l~~~l~~---------k~~vl~G~SGvGKSSLiN~L~~~~ 59 (161)
T PF03193_consen 24 EGIEELKELLKG---------KTSVLLGQSGVGKSSLINALLPEA 59 (161)
T ss_dssp TTHHHHHHHHTT---------SEEEEECSTTSSHHHHHHHHHTSS
T ss_pred cCHHHHHHHhcC---------CEEEEECCCCCCHHHHHHHHHhhc
Confidence 557788888742 589999999999999999998864
No 468
>cd01134 V_A-ATPase_A V/A-type ATP synthase catalytic subunit A. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria.
Probab=94.32 E-value=0.44 Score=48.34 Aligned_cols=48 Identities=17% Similarity=0.265 Sum_probs=36.2
Q ss_pred EEEEEEccCCCcHHHHHHHHHcccccccccccEEEEEEeCCcc-cHHHHHHHHH
Q 007817 197 CVIPIVGMAGAGKTMLAREVYNDRAVQNFKFDVKAWVSVSDDF-DVLRISRALL 249 (588)
Q Consensus 197 ~vv~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~wv~v~~~~-~~~~~~~~il 249 (588)
..++|.|..|+|||+|++++.++. +-+.++++-+++.. .+.+++.++-
T Consensus 158 qr~~I~G~~G~GKT~L~~~Iak~~-----~~dvvVyv~iGERg~Ev~e~l~ef~ 206 (369)
T cd01134 158 GTAAIPGPFGCGKTVIQQSLSKYS-----NSDIVIYVGCGERGNEMTEVLEEFP 206 (369)
T ss_pred CEEEEECCCCCChHHHHHHHHhCC-----CCCEEEEEEeCCChHHHHHHHHHHH
Confidence 588999999999999999999853 34578888887654 4455555543
No 469
>TIGR03305 alt_F1F0_F1_bet alternate F1F0 ATPase, F1 subunit beta. A small number of taxonomically diverse prokaryotic species have what appears to be a second ATP synthase, in addition to the normal F1F0 ATPase in bacteria and A1A0 ATPase in archaea. These enzymes use ion gradients to synthesize ATP, and in principle may run in either direction. This model represents the F1 beta subunit of this apparent second ATP synthase.
Probab=94.31 E-value=0.17 Score=53.25 Aligned_cols=88 Identities=17% Similarity=0.225 Sum_probs=55.7
Q ss_pred eEEEEEEccCCCcHHHHHHHHHcccccccccccEEEEEEeCCcc-cHHHHHHHHHHHhcCCCC-------CCCCHH----
Q 007817 196 FCVIPIVGMAGAGKTMLAREVYNDRAVQNFKFDVKAWVSVSDDF-DVLRISRALLESITSTNC-------DFKTLN---- 263 (588)
Q Consensus 196 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~wv~v~~~~-~~~~~~~~il~~l~~~~~-------~~~~~~---- 263 (588)
-+-++|.|.+|+|||+|+..+.++... . +-+.++++-++... ...++..++...-..... +.....
T Consensus 138 GQr~~Ifg~~G~GKt~l~~~~~~~~~~-~-~~~v~V~~~iGeR~rEv~e~~~~~~~~~~l~rtvvv~~ts~~~~~~r~~~ 215 (449)
T TIGR03305 138 GGKAGLFGGAGVGKTVLLTEMIHNMVG-Q-HQGVSIFCGIGERCREGEELYREMKEAGVLDNTVMVFGQMNEPPGARFRV 215 (449)
T ss_pred CCEEEeecCCCCChhHHHHHHHHHHHh-c-CCCEEEEEEeccCcHHHHHHHHHHhhccccceEEEEEeCCCCCHHHHHHH
Confidence 357899999999999999998887542 2 34688888886654 455666665543111110 111111
Q ss_pred -HHHHHHHHHh---cCCceeEEeccc
Q 007817 264 -EVQVKLRIIV---DGKKFLLVLDDV 285 (588)
Q Consensus 264 -~l~~~l~~~l---~~k~~LLVlDdv 285 (588)
.....+.+++ +++.+||++||+
T Consensus 216 ~~~a~tiAEyfrd~~G~~VLl~~Dsl 241 (449)
T TIGR03305 216 GHTALTMAEYFRDDEKQDVLLLIDNI 241 (449)
T ss_pred HHHHHHHHHHHHHhcCCceEEEecCh
Confidence 1222355555 468999999998
No 470
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=94.30 E-value=0.24 Score=51.24 Aligned_cols=24 Identities=38% Similarity=0.447 Sum_probs=21.6
Q ss_pred EEEEEEccCCCcHHHHHHHHHccc
Q 007817 197 CVIPIVGMAGAGKTMLAREVYNDR 220 (588)
Q Consensus 197 ~vv~I~G~gGiGKTtLA~~v~~~~ 220 (588)
.+++|+|+.|.|||||.+.++--.
T Consensus 31 e~~~llG~sGsGKSTLLr~iaGl~ 54 (356)
T PRK11650 31 EFIVLVGPSGCGKSTLLRMVAGLE 54 (356)
T ss_pred CEEEEECCCCCcHHHHHHHHHCCC
Confidence 589999999999999999998754
No 471
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=94.29 E-value=0.023 Score=64.67 Aligned_cols=121 Identities=17% Similarity=0.213 Sum_probs=58.4
Q ss_pred CeEEEEEEccCCCcHHHHHHHHHcccccccccccEEEEEEeCCcccHHHHHHHHHHHhcCCCC---CCCCHHHHHHHHHH
Q 007817 195 NFCVIPIVGMAGAGKTMLAREVYNDRAVQNFKFDVKAWVSVSDDFDVLRISRALLESITSTNC---DFKTLNEVQVKLRI 271 (588)
Q Consensus 195 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~il~~l~~~~~---~~~~~~~l~~~l~~ 271 (588)
..+++.|+|+.+.||||+.+.+.-..-. ..+-++|++... ....++..|+..++.... ...+...-...+..
T Consensus 326 ~~~~~iITGpN~gGKTt~lktigl~~~m----aq~G~~vpa~~~-~~i~~~~~i~~~ig~~~si~~~lStfS~~m~~~~~ 400 (782)
T PRK00409 326 DKTVLVITGPNTGGKTVTLKTLGLAALM----AKSGLPIPANEP-SEIPVFKEIFADIGDEQSIEQSLSTFSGHMTNIVR 400 (782)
T ss_pred CceEEEEECCCCCCcHHHHHHHHHHHHH----HHhCCCcccCCC-ccccccceEEEecCCccchhhchhHHHHHHHHHHH
Confidence 4478999999999999999888543110 111112222211 001111111111211110 11111111222222
Q ss_pred Hhc--CCceeEEecccccc-ChhHHHHh----hcccCCCCCCcEEEEeecchhhhhhc
Q 007817 272 IVD--GKKFLLVLDDVWNE-NYNLWEIL----KAPFMAGARNSKIIVTTCHSNVASMM 322 (588)
Q Consensus 272 ~l~--~k~~LLVlDdv~~~-~~~~~~~l----~~~l~~~~~gs~ilvTTR~~~v~~~~ 322 (588)
.+. ..+-|+++|..-.. ++..-..+ ...+. ..|+.+|+||...++....
T Consensus 401 Il~~~~~~sLvLlDE~~~GtDp~eg~ala~aile~l~--~~~~~vIitTH~~el~~~~ 456 (782)
T PRK00409 401 ILEKADKNSLVLFDELGAGTDPDEGAALAISILEYLR--KRGAKIIATTHYKELKALM 456 (782)
T ss_pred HHHhCCcCcEEEecCCCCCCCHHHHHHHHHHHHHHHH--HCCCEEEEECChHHHHHHH
Confidence 222 47889999998532 22222222 22222 2478999999998776553
No 472
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=94.28 E-value=0.033 Score=51.87 Aligned_cols=21 Identities=33% Similarity=0.336 Sum_probs=18.7
Q ss_pred EEEEEccCCCcHHHHHHHHHc
Q 007817 198 VIPIVGMAGAGKTMLAREVYN 218 (588)
Q Consensus 198 vv~I~G~gGiGKTtLA~~v~~ 218 (588)
++.|+|+.|.||||+.+.+.-
T Consensus 1 ~~~ltG~N~~GKst~l~~i~~ 21 (185)
T smart00534 1 VVIITGPNMGGKSTYLRQVGL 21 (185)
T ss_pred CEEEECCCCCcHHHHHHHHHH
Confidence 467999999999999999874
No 473
>COG5635 Predicted NTPase (NACHT family) [Signal transduction mechanisms]
Probab=94.27 E-value=0.055 Score=62.51 Aligned_cols=185 Identities=14% Similarity=0.151 Sum_probs=92.1
Q ss_pred eEEEEEEccCCCcHHHHHHHHHcccccccc-cccEEEEEEeCCc-----ccHH-HHHHHHHHHhcCCCCCCCCHHHHHHH
Q 007817 196 FCVIPIVGMAGAGKTMLAREVYNDRAVQNF-KFDVKAWVSVSDD-----FDVL-RISRALLESITSTNCDFKTLNEVQVK 268 (588)
Q Consensus 196 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~-~f~~~~wv~v~~~-----~~~~-~~~~~il~~l~~~~~~~~~~~~l~~~ 268 (588)
..-+.|+|.+|+||||+.+.+.-....+.. .=+..+++.+... +... .+...+...+...... ......
T Consensus 222 ~~~~~Ilg~pGsGKTtfl~~lA~~~~~~~~~~~~vpi~~~l~~~~~~~~~~~q~~~~~~l~~~~~~~~~~----~~~~~~ 297 (824)
T COG5635 222 YAKLLILGAPGSGKTTFLQRLALWLAQRTLEPEDVPIFLLLNAFALARKFEKQLSLIDYLAEELFSQGIA----KQLIEA 297 (824)
T ss_pred hhheeeecCCCCCceehHHHHHHHhccCcCCcccCceeeechhHHHhhhhHhhccHHHHHHHHHhccCCc----chhhHH
Confidence 347899999999999999888665433210 1223344433211 1111 2233333333222211 111222
Q ss_pred HHHHhcCCceeEEeccccccChhHHHHh---hcccCCCCCCcEEEEeecchhhhhhccccceeeCCCCCHHHHHHHHHH-
Q 007817 269 LRIIVDGKKFLLVLDDVWNENYNLWEIL---KAPFMAGARNSKIIVTTCHSNVASMMGSVEHYNLKLLSDEYCWSVFVK- 344 (588)
Q Consensus 269 l~~~l~~k~~LLVlDdv~~~~~~~~~~l---~~~l~~~~~gs~ilvTTR~~~v~~~~~~~~~~~l~~L~~~ea~~Lf~~- 344 (588)
..++++..++++++|.+.......-... ...+...-+.+.+|+|+|....-........+++..+.++.-......
T Consensus 298 ~~e~l~~g~~llLlDGlDe~~~~~~~~~~~~i~~f~~~~~~~~~iltcR~~~~~~~~~~f~~~ei~~~~~~~i~~~~~~~ 377 (824)
T COG5635 298 HQELLKTGKLLLLLDGLDELEPKNQRALIREINKFLQEYPDAQVLLTCRPDTYKEEFKGFAVFEIYKFLDLQINQFILYQ 377 (824)
T ss_pred HHHHHhccchhhHhhccchhhhhhHHHHHHHHHHHhhhccCCeEEEEeccchhhhhhhhhhhccchhhhHHHHHHHHHHH
Confidence 2567888999999999854322111111 111222335789999998765555444445566666665544433321
Q ss_pred -------hhcCCCCCCCChhHHHH---HHHHHHHhCCCchHHHHhhhhcc
Q 007817 345 -------HAFERRDAGAHQFSKLF---RKKIVAKCGGLPLAVSTLGGLLR 384 (588)
Q Consensus 345 -------~a~~~~~~~~~~~~~~i---~~~I~~~c~GlPLai~~~~~~L~ 384 (588)
..++............+ ...-++.....|+.|.+.+..-.
T Consensus 378 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ik~l~~~p~~L~l~c~~~~ 427 (824)
T COG5635 378 WLDAFIEDWFGDSRLLAKKLLERLKLPENRRIKELALTPLLLALECLIWQ 427 (824)
T ss_pred HHHHHHHhhhcccchhhHHHHHHhcchhhHHHHHhccCHHHHHHHHHhhh
Confidence 11111110100011111 12234444788999988875443
No 474
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=94.25 E-value=0.1 Score=53.02 Aligned_cols=41 Identities=24% Similarity=0.341 Sum_probs=29.9
Q ss_pred HHHHHHHhcCCCCCCCCeEEEEEEccCCCcHHHHHHHHHcccccc
Q 007817 179 ARMLEMVLSDDPTTDANFCVIPIVGMAGAGKTMLAREVYNDRAVQ 223 (588)
Q Consensus 179 ~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 223 (588)
..+.+.+... .++..+|+|.|.+|+|||||+..+....+..
T Consensus 43 ~~l~~~~~~~----~~~~~~igi~G~~GaGKSTl~~~l~~~l~~~ 83 (332)
T PRK09435 43 QELLDALLPH----TGNALRIGITGVPGVGKSTFIEALGMHLIEQ 83 (332)
T ss_pred HHHHHHHhhc----CCCcEEEEEECCCCCCHHHHHHHHHHHHHHC
Confidence 3455554332 2366899999999999999999987766543
No 475
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=94.23 E-value=0.035 Score=51.00 Aligned_cols=24 Identities=33% Similarity=0.472 Sum_probs=21.5
Q ss_pred EEEEEEccCCCcHHHHHHHHHccc
Q 007817 197 CVIPIVGMAGAGKTMLAREVYNDR 220 (588)
Q Consensus 197 ~vv~I~G~gGiGKTtLA~~v~~~~ 220 (588)
..|.|+|+.|+|||||++.+.+..
T Consensus 5 ~~I~liG~~GaGKStl~~~La~~l 28 (172)
T PRK05057 5 RNIFLVGPMGAGKSTIGRQLAQQL 28 (172)
T ss_pred CEEEEECCCCcCHHHHHHHHHHHc
Confidence 468999999999999999999854
No 476
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=94.22 E-value=1 Score=42.89 Aligned_cols=156 Identities=17% Similarity=0.201 Sum_probs=82.2
Q ss_pred ceeec-hhhHHHHHHHHhcCCC-------CCCCCeEEEEEEccCCCcHHHHHHHHHcccccccccccEEEEEEeCCcccH
Q 007817 170 AVYGR-DEDKARMLEMVLSDDP-------TTDANFCVIPIVGMAGAGKTMLAREVYNDRAVQNFKFDVKAWVSVSDDFDV 241 (588)
Q Consensus 170 ~~vGR-~~e~~~l~~~L~~~~~-------~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~wv~v~~~~~~ 241 (588)
+++|+ +..+++|.+.+.-+-. -+-.+++-+.++|++|.|||-||+.|+++ ..+-|+.||..
T Consensus 147 eMiGgLd~QIkeIkEVIeLPvKHPELF~aLGIaQPKGvlLygppgtGktLlaraVahh--------t~c~firvsgs--- 215 (404)
T KOG0728|consen 147 EMIGGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHH--------TDCTFIRVSGS--- 215 (404)
T ss_pred HHhccHHHHHHHHHHHHhccccCHHHHHhcCCCCCcceEEecCCCCchhHHHHHHHhh--------cceEEEEechH---
Confidence 35554 6666666655432211 12345677889999999999999999973 33445677654
Q ss_pred HHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhcCCceeEEeccccccC-----------hh---HHHHhhcccCC--CCC
Q 007817 242 LRISRALLESITSTNCDFKTLNEVQVKLRIIVDGKKFLLVLDDVWNEN-----------YN---LWEILKAPFMA--GAR 305 (588)
Q Consensus 242 ~~~~~~il~~l~~~~~~~~~~~~l~~~l~~~l~~k~~LLVlDdv~~~~-----------~~---~~~~l~~~l~~--~~~ 305 (588)
++.+..-+. +..-..++.-.-+ ..-+-+|..|.+.+.. .+ ..-.+...|.. ..+
T Consensus 216 -----elvqk~ige--gsrmvrelfvmar---ehapsiifmdeidsigs~r~e~~~ggdsevqrtmlellnqldgfeatk 285 (404)
T KOG0728|consen 216 -----ELVQKYIGE--GSRMVRELFVMAR---EHAPSIIFMDEIDSIGSSRVESGSGGDSEVQRTMLELLNQLDGFEATK 285 (404)
T ss_pred -----HHHHHHhhh--hHHHHHHHHHHHH---hcCCceEeeecccccccccccCCCCccHHHHHHHHHHHHhcccccccc
Confidence 122221111 1111122221111 2456788888774310 01 11112222221 235
Q ss_pred CcEEEEeecchhhhhh--cc---ccceeeCCCCCHHHHHHHHHHhh
Q 007817 306 NSKIIVTTCHSNVASM--MG---SVEHYNLKLLSDEYCWSVFVKHA 346 (588)
Q Consensus 306 gs~ilvTTR~~~v~~~--~~---~~~~~~l~~L~~~ea~~Lf~~~a 346 (588)
.-+||..|..-++... +. .+..++..+-+++.-.+++.-+.
T Consensus 286 nikvimatnridild~allrpgridrkiefp~p~e~ar~~ilkihs 331 (404)
T KOG0728|consen 286 NIKVIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILKIHS 331 (404)
T ss_pred ceEEEEeccccccccHhhcCCCcccccccCCCCCHHHHHHHHHHhh
Confidence 6788887765544332 11 33567777777777667766543
No 477
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=94.22 E-value=1 Score=49.33 Aligned_cols=155 Identities=16% Similarity=0.139 Sum_probs=83.8
Q ss_pred eeechhhHHHHHHHHhcCCCC-------CCCCeEEEEEEccCCCcHHHHHHHHHcccccccccccEEEEEEeCCcccHHH
Q 007817 171 VYGRDEDKARMLEMVLSDDPT-------TDANFCVIPIVGMAGAGKTMLAREVYNDRAVQNFKFDVKAWVSVSDDFDVLR 243 (588)
Q Consensus 171 ~vGR~~e~~~l~~~L~~~~~~-------~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~ 243 (588)
+=|..+.++-+.+.+.-+... .-....-|.++|++|.|||-||.++...... -+|+|-.+
T Consensus 669 igg~~~~k~~l~~~i~~P~kyp~if~~~plr~~~giLLyGppGcGKT~la~a~a~~~~~--------~fisvKGP----- 735 (952)
T KOG0735|consen 669 IGGLFEAKKVLEEVIEWPSKYPQIFANCPLRLRTGILLYGPPGCGKTLLASAIASNSNL--------RFISVKGP----- 735 (952)
T ss_pred cccHHHHHHHHHHHHhccccchHHHhhCCcccccceEEECCCCCcHHHHHHHHHhhCCe--------eEEEecCH-----
Confidence 445666666666666544310 1123456889999999999999999885432 13555544
Q ss_pred HHHHHHHHhcCCCCCCCCHHHHHHHHHHHhcCCceeEEeccccccC-----------hhHHHHhhcccCC--CCCCcEEE
Q 007817 244 ISRALLESITSTNCDFKTLNEVQVKLRIIVDGKKFLLVLDDVWNEN-----------YNLWEILKAPFMA--GARNSKII 310 (588)
Q Consensus 244 ~~~~il~~l~~~~~~~~~~~~l~~~l~~~l~~k~~LLVlDdv~~~~-----------~~~~~~l~~~l~~--~~~gs~il 310 (588)
+++...-+ .+.+.......+.-.-++++|.+|...+-. ....+++...+.. +-.|.-|+
T Consensus 736 ---ElL~KyIG-----aSEq~vR~lF~rA~~a~PCiLFFDEfdSiAPkRGhDsTGVTDRVVNQlLTelDG~Egl~GV~i~ 807 (952)
T KOG0735|consen 736 ---ELLSKYIG-----ASEQNVRDLFERAQSAKPCILFFDEFDSIAPKRGHDSTGVTDRVVNQLLTELDGAEGLDGVYIL 807 (952)
T ss_pred ---HHHHHHhc-----ccHHHHHHHHHHhhccCCeEEEeccccccCcccCCCCCCchHHHHHHHHHhhccccccceEEEE
Confidence 22322211 122233333444445799999999985421 2234555555442 23566676
Q ss_pred Eeecchhhhhh--ccc---cceeeCCCCCHHHHHHHHHHhh
Q 007817 311 VTTCHSNVASM--MGS---VEHYNLKLLSDEYCWSVFVKHA 346 (588)
Q Consensus 311 vTTR~~~v~~~--~~~---~~~~~l~~L~~~ea~~Lf~~~a 346 (588)
-.|..++.... +.+ ++.+.-+.-++.+-.++|....
T Consensus 808 aaTsRpdliDpALLRpGRlD~~v~C~~P~~~eRl~il~~ls 848 (952)
T KOG0735|consen 808 AATSRPDLIDPALLRPGRLDKLVYCPLPDEPERLEILQVLS 848 (952)
T ss_pred EecCCccccCHhhcCCCccceeeeCCCCCcHHHHHHHHHHh
Confidence 55544433221 111 2233344445556666666554
No 478
>TIGR01818 ntrC nitrogen regulation protein NR(I). This model represents NtrC, a DNA-binding response regulator that is phosphorylated by NtrB and interacts with sigma-54. NtrC usually controls the expression of glutamine synthase, GlnA, and may be called GlnL, GlnG, etc.
Probab=94.21 E-value=0.27 Score=53.00 Aligned_cols=134 Identities=13% Similarity=0.120 Sum_probs=70.1
Q ss_pred ceeechhhHHHHHHHHhcCCCCCCCCeEEEEEEccCCCcHHHHHHHHHcccccccccccEEEEEEeCCcccHHHHHHHHH
Q 007817 170 AVYGRDEDKARMLEMVLSDDPTTDANFCVIPIVGMAGAGKTMLAREVYNDRAVQNFKFDVKAWVSVSDDFDVLRISRALL 249 (588)
Q Consensus 170 ~~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~il 249 (588)
.++|......++.+.+..... ....+.|.|..|+||+++|+.+....... ....+-+++..- ..+.+...+
T Consensus 135 ~lig~s~~~~~v~~~i~~~a~----~~~~vli~Ge~GtGK~~~A~~ih~~~~~~---~~~~~~~~c~~~--~~~~~~~~l 205 (463)
T TIGR01818 135 ELIGEAPAMQEVFRAIGRLSR----SDITVLINGESGTGKELVARALHRHSPRA---NGPFIALNMAAI--PKDLIESEL 205 (463)
T ss_pred ceeecCHHHHHHHHHHHHHhC----cCCeEEEECCCCCCHHHHHHHHHHhCCCC---CCCeEEEeCCCC--CHHHHHHHh
Confidence 478877777777776654321 22457899999999999999998754321 122223344332 122222222
Q ss_pred HHhcCCCCCCCCHHHHHHHHHHHhcCCceeEEeccccccChhHHHHhhcccCCCC-----------CCcEEEEeecch
Q 007817 250 ESITSTNCDFKTLNEVQVKLRIIVDGKKFLLVLDDVWNENYNLWEILKAPFMAGA-----------RNSKIIVTTCHS 316 (588)
Q Consensus 250 ~~l~~~~~~~~~~~~l~~~l~~~l~~k~~LLVlDdv~~~~~~~~~~l~~~l~~~~-----------~gs~ilvTTR~~ 316 (588)
++........... ......-....-.|+||++...+......+...+..+. .+.+||+||...
T Consensus 206 --fg~~~~~~~~~~~--~~~g~~~~a~~gtl~l~ei~~l~~~~q~~ll~~l~~~~~~~~~~~~~~~~~~rii~~~~~~ 279 (463)
T TIGR01818 206 --FGHEKGAFTGANT--RRQGRFEQADGGTLFLDEIGDMPLDAQTRLLRVLADGEFYRVGGRTPIKVDVRIVAATHQN 279 (463)
T ss_pred --cCCCCCCCCCccc--CCCCcEEECCCCeEEEEchhhCCHHHHHHHHHHHhcCcEEECCCCceeeeeeEEEEeCCCC
Confidence 1111100000000 00000111223458999998777666666665554321 245788888544
No 479
>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein.
Probab=94.19 E-value=0.51 Score=53.82 Aligned_cols=26 Identities=31% Similarity=0.350 Sum_probs=22.6
Q ss_pred eEEEEEEccCCCcHHHHHHHHHcccc
Q 007817 196 FCVIPIVGMAGAGKTMLAREVYNDRA 221 (588)
Q Consensus 196 ~~vv~I~G~gGiGKTtLA~~v~~~~~ 221 (588)
-..++|+|+.|.|||||++.+..-..
T Consensus 507 Ge~vaIvG~SGsGKSTLl~lL~gl~~ 532 (711)
T TIGR00958 507 GEVVALVGPSGSGKSTVAALLQNLYQ 532 (711)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhccC
Confidence 36899999999999999999977654
No 480
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=94.19 E-value=0.095 Score=58.09 Aligned_cols=46 Identities=22% Similarity=0.305 Sum_probs=36.3
Q ss_pred CceeechhhHHHHHHHHhcCCCCCCCCeEEEEEEccCCCcHHHHHHHHHccccc
Q 007817 169 RAVYGRDEDKARMLEMVLSDDPTTDANFCVIPIVGMAGAGKTMLAREVYNDRAV 222 (588)
Q Consensus 169 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~ 222 (588)
.+++|.++.++.+...+... ..+.++|++|+||||||+.+.+....
T Consensus 18 ~~viG~~~a~~~l~~a~~~~--------~~~ll~G~pG~GKT~la~~la~~l~~ 63 (608)
T TIGR00764 18 DQVIGQEEAVEIIKKAAKQK--------RNVLLIGEPGVGKSMLAKAMAELLPD 63 (608)
T ss_pred hhccCHHHHHHHHHHHHHcC--------CCEEEECCCCCCHHHHHHHHHHHcCc
Confidence 46789998888777777543 25559999999999999999986543
No 481
>PRK07276 DNA polymerase III subunit delta'; Validated
Probab=94.18 E-value=2.2 Score=42.57 Aligned_cols=69 Identities=13% Similarity=0.180 Sum_probs=48.7
Q ss_pred CCceeEEeccccccChhHHHHhhcccCCCCCCcEEEEeecch-hhhhhcc-ccceeeCCCCCHHHHHHHHHH
Q 007817 275 GKKFLLVLDDVWNENYNLWEILKAPFMAGARNSKIIVTTCHS-NVASMMG-SVEHYNLKLLSDEYCWSVFVK 344 (588)
Q Consensus 275 ~k~~LLVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTTR~~-~v~~~~~-~~~~~~l~~L~~~ea~~Lf~~ 344 (588)
+++=++|+||+...+....+.+...+.....++.+|++|.+. .+...+. ....+.+.+ +.++..+.+..
T Consensus 103 ~~~kV~II~~ad~m~~~AaNaLLKtLEEPp~~t~~iL~t~~~~~lLpTI~SRcq~i~f~~-~~~~~~~~L~~ 173 (290)
T PRK07276 103 GKQQVFIIKDADKMHVNAANSLLKVIEEPQSEIYIFLLTNDENKVLPTIKSRTQIFHFPK-NEAYLIQLLEQ 173 (290)
T ss_pred CCcEEEEeehhhhcCHHHHHHHHHHhcCCCCCeEEEEEECChhhCchHHHHcceeeeCCC-cHHHHHHHHHH
Confidence 556699999998888889999988888766667777766554 4444332 446677766 66666666653
No 482
>PRK05688 fliI flagellum-specific ATP synthase; Validated
Probab=94.16 E-value=0.19 Score=53.05 Aligned_cols=84 Identities=17% Similarity=0.186 Sum_probs=49.0
Q ss_pred EEEEEEccCCCcHHHHHHHHHcccccccccccEEEEEEeCCc-ccHHHHHHHHHHHhcCCCC-------CCCCHHH----
Q 007817 197 CVIPIVGMAGAGKTMLAREVYNDRAVQNFKFDVKAWVSVSDD-FDVLRISRALLESITSTNC-------DFKTLNE---- 264 (588)
Q Consensus 197 ~vv~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~wv~v~~~-~~~~~~~~~il~~l~~~~~-------~~~~~~~---- 264 (588)
..++|+|..|+|||||++.+.... ..+.++...+... ....++...+...-..... +......
T Consensus 169 qrigI~G~sG~GKSTLl~~I~g~~-----~~dv~V~g~Ig~rg~ev~~~~~~~~~~~~l~rsvvv~atsd~~p~~r~~a~ 243 (451)
T PRK05688 169 QRLGLFAGTGVGKSVLLGMMTRFT-----EADIIVVGLIGERGREVKEFIEHILGEEGLKRSVVVASPADDAPLMRLRAA 243 (451)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC-----CCCEEEEEEeCcCcHhHHHHHHHHhhcCCccEEEEEEECCCCCHHHHHHHH
Confidence 578999999999999999998743 2344444444433 3445555555443221110 1111111
Q ss_pred -HHHHHHHHh--cCCceeEEeccc
Q 007817 265 -VQVKLRIIV--DGKKFLLVLDDV 285 (588)
Q Consensus 265 -l~~~l~~~l--~~k~~LLVlDdv 285 (588)
....+.+++ +++.+||++||+
T Consensus 244 ~~a~aiAEyfrd~G~~VLl~~Dsl 267 (451)
T PRK05688 244 MYCTRIAEYFRDKGKNVLLLMDSL 267 (451)
T ss_pred HHHHHHHHHHHHCCCCEEEEecch
Confidence 122344444 589999999998
No 483
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=94.15 E-value=0.044 Score=52.05 Aligned_cols=27 Identities=22% Similarity=0.449 Sum_probs=24.2
Q ss_pred CCeEEEEEEccCCCcHHHHHHHHHccc
Q 007817 194 ANFCVIPIVGMAGAGKTMLAREVYNDR 220 (588)
Q Consensus 194 ~~~~vv~I~G~gGiGKTtLA~~v~~~~ 220 (588)
+++++++++|+.|+|||||...+.+..
T Consensus 20 ~~~~~i~~~G~~gsGKTTli~~l~~~~ 46 (207)
T TIGR00073 20 HGLVVLNFMSSPGSGKTTLIEKLIDNL 46 (207)
T ss_pred cCcEEEEEECCCCCCHHHHHHHHHHHH
Confidence 468999999999999999999998754
No 484
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=94.15 E-value=0.38 Score=52.82 Aligned_cols=24 Identities=21% Similarity=0.351 Sum_probs=21.8
Q ss_pred EEEEEEccCCCcHHHHHHHHHccc
Q 007817 197 CVIPIVGMAGAGKTMLAREVYNDR 220 (588)
Q Consensus 197 ~vv~I~G~gGiGKTtLA~~v~~~~ 220 (588)
.+++|+|+.|+|||||.+.++...
T Consensus 28 e~~~liG~NGsGKSTLl~~l~Gl~ 51 (530)
T PRK15064 28 NRYGLIGANGCGKSTFMKILGGDL 51 (530)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 589999999999999999998754
No 485
>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional
Probab=94.14 E-value=0.4 Score=51.66 Aligned_cols=24 Identities=25% Similarity=0.515 Sum_probs=21.9
Q ss_pred EEEEEEccCCCcHHHHHHHHHccc
Q 007817 197 CVIPIVGMAGAGKTMLAREVYNDR 220 (588)
Q Consensus 197 ~vv~I~G~gGiGKTtLA~~v~~~~ 220 (588)
.+++|+|+.|+|||||++.++...
T Consensus 51 EivgIiGpNGSGKSTLLkiLaGLl 74 (549)
T PRK13545 51 EIVGIIGLNGSGKSTLSNLIAGVT 74 (549)
T ss_pred CEEEEEcCCCCCHHHHHHHHhCCC
Confidence 589999999999999999998764
No 486
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=94.14 E-value=0.37 Score=52.24 Aligned_cols=133 Identities=18% Similarity=0.168 Sum_probs=72.1
Q ss_pred EEEEEEccCCCcHHHHHHHHHcccccc-c----ccccEEEEEEeCC-c--------------c-c-HHHHHHHHHHHhcC
Q 007817 197 CVIPIVGMAGAGKTMLAREVYNDRAVQ-N----FKFDVKAWVSVSD-D--------------F-D-VLRISRALLESITS 254 (588)
Q Consensus 197 ~vv~I~G~gGiGKTtLA~~v~~~~~~~-~----~~f~~~~wv~v~~-~--------------~-~-~~~~~~~il~~l~~ 254 (588)
..|+|+|+.|+|||||.+.+....... + ..--.+.|+.-.. . + + ...-.+..+..++-
T Consensus 349 ~riaiiG~NG~GKSTLlk~l~g~~~~~~G~v~~g~~v~igyf~Q~~~~l~~~~t~~d~l~~~~~~~~e~~~r~~L~~f~F 428 (530)
T COG0488 349 DRIAIVGPNGAGKSTLLKLLAGELGPLSGTVKVGETVKIGYFDQHRDELDPDKTVLEELSEGFPDGDEQEVRAYLGRFGF 428 (530)
T ss_pred CEEEEECCCCCCHHHHHHHHhhhcccCCceEEeCCceEEEEEEehhhhcCccCcHHHHHHhhCccccHHHHHHHHHHcCC
Confidence 579999999999999999995543211 0 0111122222111 0 0 0 12334444444443
Q ss_pred CCCC-------CCCHHHHHHHHHHHhcCCceeEEeccccc-cChhHHHHhhcccCCCCCCcEEEEeecchhhhhhccccc
Q 007817 255 TNCD-------FKTLNEVQVKLRIIVDGKKFLLVLDDVWN-ENYNLWEILKAPFMAGARNSKIIVTTCHSNVASMMGSVE 326 (588)
Q Consensus 255 ~~~~-------~~~~~~l~~~l~~~l~~k~~LLVlDdv~~-~~~~~~~~l~~~l~~~~~gs~ilvTTR~~~v~~~~~~~~ 326 (588)
.... -+..+...-.|...+-.++=+||||.--+ -+.+..+.|...|... ...||+.|.++.....+. ..
T Consensus 429 ~~~~~~~~v~~LSGGEk~Rl~La~ll~~~pNvLiLDEPTNhLDi~s~~aLe~aL~~f--~Gtvl~VSHDr~Fl~~va-~~ 505 (530)
T COG0488 429 TGEDQEKPVGVLSGGEKARLLLAKLLLQPPNLLLLDEPTNHLDIESLEALEEALLDF--EGTVLLVSHDRYFLDRVA-TR 505 (530)
T ss_pred ChHHHhCchhhcCHhHHHHHHHHHHhccCCCEEEEcCCCccCCHHHHHHHHHHHHhC--CCeEEEEeCCHHHHHhhc-ce
Confidence 3221 11223334456667778899999997532 1234445555555433 234888888888877654 44
Q ss_pred eeeCCC
Q 007817 327 HYNLKL 332 (588)
Q Consensus 327 ~~~l~~ 332 (588)
++.+.+
T Consensus 506 i~~~~~ 511 (530)
T COG0488 506 IWLVED 511 (530)
T ss_pred EEEEcC
Confidence 555553
No 487
>TIGR01040 V-ATPase_V1_B V-type (H+)-ATPase V1, B subunit. This models eukaryotic vacuolar (H+)-ATPase that is responsible for acidifying cellular compartments. This enzyme shares extensive sequence similarity with archaeal ATP synthase.
Probab=94.11 E-value=0.21 Score=52.50 Aligned_cols=90 Identities=16% Similarity=0.207 Sum_probs=55.9
Q ss_pred eEEEEEEccCCCcHHHHHHHHHccccccc-cccc---------EEEEEEeCCcccHHHHHHHHHHHhc-CCCC-------
Q 007817 196 FCVIPIVGMAGAGKTMLAREVYNDRAVQN-FKFD---------VKAWVSVSDDFDVLRISRALLESIT-STNC------- 257 (588)
Q Consensus 196 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~~-~~f~---------~~~wv~v~~~~~~~~~~~~il~~l~-~~~~------- 257 (588)
-+-++|.|-+|+|||||+..+.++..... ...| .++++-+++.....+.+...+..-+ ....
T Consensus 141 GQRigIfagsGvGKs~L~~~i~~~~~~~~~~~aD~~~~~~~~~v~V~a~IGerre~~efi~~~l~~~g~l~rtvvv~ats 220 (466)
T TIGR01040 141 GQKIPIFSAAGLPHNEIAAQICRQAGLVKLPTKDVHDGHEDNFAIVFAAMGVNMETARFFKQDFEENGSMERVCLFLNLA 220 (466)
T ss_pred CCeeeeecCCCCCHHHHHHHHHHhhccccccccccccccCCceEEEEEEeeeehHHHHHHHHHHHhcCCcceEEEEEECC
Confidence 35789999999999999999987654100 0022 5677777777666666666665544 1111
Q ss_pred CCCCHHH-----HHHHHHHHhc---CCceeEEeccc
Q 007817 258 DFKTLNE-----VQVKLRIIVD---GKKFLLVLDDV 285 (588)
Q Consensus 258 ~~~~~~~-----l~~~l~~~l~---~k~~LLVlDdv 285 (588)
+...... ....+.++++ ++.+||++||+
T Consensus 221 d~p~~~R~~a~~~a~tiAEyfr~~~G~~VLl~~Dsl 256 (466)
T TIGR01040 221 NDPTIERIITPRLALTTAEYLAYQCEKHVLVILTDM 256 (466)
T ss_pred CCCHHHHHHHHhhhHHHHHHHHHhcCCcEEEeccCh
Confidence 1111111 1223455554 68999999998
No 488
>PF05659 RPW8: Arabidopsis broad-spectrum mildew resistance protein RPW8; InterPro: IPR008808 This entry represents the RPW8 domain found in several broad-spectrum mildew resistance proteins from Arabidopsis thaliana and other dicots. Plant disease resistance (R) genes control the recognition of specific pathogens and activate subsequent defence responses. The R protein-mediated defences typically involve a rapid, localized necrosis, or hypersensitive response (HR), at the site of infection, and the localised formation of antimicrobial chemicals and proteins that restrict growth of the pathogen. The A. thaliana locus Resistance to Powdery Mildew 8 (RPW8) contains two naturally polymorphic, dominant R genes: RPW8.1 and RPW8.2, which individually control resistance to a broad range of powdery mildew pathogens. They induce localised, salicylic acid-dependent defences similar to those induced by R genes that control specific resistance. Apparently, broad-spectrum resistance mediated by RPW8 uses the same mechanisms as specific resistance [, ]. RPW8.1 and RPW8.2 share similarity with an ~150 amino acid module forming the N terminus of a group of disease resistance proteins, which have a nucleotide-binding site (NBS) and leucine-rich repeats (LRRs) [, ]. The RPW8 domain sequences contain a predicted N-terminal transmembrane (TM) region or possibly a signal peptide, and a coiled-coil (CC) motif [].
Probab=94.11 E-value=0.87 Score=40.40 Aligned_cols=109 Identities=18% Similarity=0.263 Sum_probs=68.4
Q ss_pred hhhHHHHHHHHHHHHHHhhHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHhhcc-CcHHHHHHHHHHHHHhhchH
Q 007817 3 VGELLLSAFFQVLFDRLASRDLLNFVRQLQGGLDSELKKWENTLIMIQAVLCDAEEKQL-TNKAVKIWLDDLRDLAYDAE 81 (588)
Q Consensus 3 ~~~~~~s~~~~~l~~~l~~~~~~~~~~~~~v~~~~~~~~L~~~l~~i~~~l~~a~~~~~-~~~~v~~Wl~~lrd~ayd~e 81 (588)
++|+++.++++.++..+... ....... +.-+++|...++.|.-++++.+.... -+..-+.=++++.+...+++
T Consensus 6 ~~gaalG~~~~eLlk~v~~~----~~k~~~f--k~~l~~L~sTl~~i~P~i~eI~~~~~eld~~~~ee~e~L~~~L~~g~ 79 (147)
T PF05659_consen 6 VGGAALGAVFGELLKAVIDA----SKKSLSF--KSILKRLESTLESIIPIIKEIDKLNVELDRPRQEEIERLKELLEKGK 79 (147)
T ss_pred HHHHHHHHHHHHHHHHHHHH----HHHHHhh--hhHHHHHHHHHHHhhhHHHHHHHHhhhcCCchhHHHHHHHHHHHHHH
Confidence 45555555555555444433 2333334 56799999999999999998887542 23333666788888888889
Q ss_pred hHHHHHHHHHHhhhhccccCCCCCCcccccCCCCcchhhhHHHHHHHHHHHHHHHHH
Q 007817 82 DILDEFATEALKHESMAENSNLSPACFSYFNPSSLKFNIDTDSKIKSITTRLDEICA 138 (588)
Q Consensus 82 D~lD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~~i~~ 138 (588)
++++.|.. +++ + .+....+.+++|+++.+.+....+
T Consensus 80 ~LV~k~sk--------------~~r-~------n~~kk~~y~~Ki~~le~~l~~f~~ 115 (147)
T PF05659_consen 80 ELVEKCSK--------------VRR-W------NLYKKPRYARKIEELEESLRRFIQ 115 (147)
T ss_pred HHHHHhcc--------------ccH-H------HHHhhHhHHHHHHHHHHHHHHHhc
Confidence 88888731 111 0 011133567778877777776654
No 489
>TIGR03497 FliI_clade2 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=94.09 E-value=0.2 Score=52.55 Aligned_cols=85 Identities=19% Similarity=0.195 Sum_probs=47.9
Q ss_pred eEEEEEEccCCCcHHHHHHHHHcccccccccccEEEEEEeCC-cccHHHHHHHHHHHhcCCC-------CCCCCHH----
Q 007817 196 FCVIPIVGMAGAGKTMLAREVYNDRAVQNFKFDVKAWVSVSD-DFDVLRISRALLESITSTN-------CDFKTLN---- 263 (588)
Q Consensus 196 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~wv~v~~-~~~~~~~~~~il~~l~~~~-------~~~~~~~---- 263 (588)
-..++|+|..|+|||||++.+.+.... +..+..-++. .-...++....+.+-+... .+.....
T Consensus 137 Gqri~I~G~sG~GKTtLl~~i~~~~~~-----~~gvi~~~Ger~~ev~e~~~~~l~~~~~~~~v~v~~tsd~~~~~r~~~ 211 (413)
T TIGR03497 137 GQRVGIFAGSGVGKSTLLGMIARNAKA-----DINVIALIGERGREVRDFIEKDLGEEGLKRSVVVVATSDQPALMRLKA 211 (413)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCC-----CeEEEEEEccchHHHHHHHHHHhcccccceEEEEEECCCCCHHHHHHH
Confidence 368999999999999999988875432 2222223333 2344555554443311110 0111111
Q ss_pred -HHHHHHHHHh--cCCceeEEeccc
Q 007817 264 -EVQVKLRIIV--DGKKFLLVLDDV 285 (588)
Q Consensus 264 -~l~~~l~~~l--~~k~~LLVlDdv 285 (588)
.....+.+++ +++.+||++||+
T Consensus 212 ~~~a~tiAEyfr~~G~~Vll~~Dsl 236 (413)
T TIGR03497 212 AFTATAIAEYFRDQGKDVLLMMDSV 236 (413)
T ss_pred HHHHHHHHHHHHHCCCCEEEEEcCc
Confidence 1122344444 589999999998
No 490
>TIGR00041 DTMP_kinase thymidylate kinase. Function: phosphorylation of DTMP to form DTDP in both de novo and salvage pathways of DTTP synthesis. Catalytic activity: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate.
Probab=94.08 E-value=0.11 Score=48.66 Aligned_cols=27 Identities=33% Similarity=0.300 Sum_probs=23.7
Q ss_pred EEEEEEccCCCcHHHHHHHHHcccccc
Q 007817 197 CVIPIVGMAGAGKTMLAREVYNDRAVQ 223 (588)
Q Consensus 197 ~vv~I~G~gGiGKTtLA~~v~~~~~~~ 223 (588)
..|+|.|..|+||||+++.+.+.....
T Consensus 4 ~~IvieG~~GsGKsT~~~~L~~~l~~~ 30 (195)
T TIGR00041 4 MFIVIEGIDGAGKTTQANLLKKLLQEN 30 (195)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 579999999999999999999876543
No 491
>COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=94.06 E-value=0.066 Score=47.89 Aligned_cols=35 Identities=23% Similarity=0.353 Sum_probs=28.8
Q ss_pred EEEEEEccCCCcHHHHHHHHHcccccccccccEEEEEEe
Q 007817 197 CVIPIVGMAGAGKTMLAREVYNDRAVQNFKFDVKAWVSV 235 (588)
Q Consensus 197 ~vv~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~wv~v 235 (588)
-+++++|++|+|||||.+.+|.++.... ..+||.-
T Consensus 38 ECvvL~G~SG~GKStllr~LYaNY~~d~----G~I~v~H 72 (235)
T COG4778 38 ECVVLHGPSGSGKSTLLRSLYANYLPDE----GQILVRH 72 (235)
T ss_pred cEEEeeCCCCCcHHHHHHHHHhccCCCC----ceEEEEe
Confidence 4788999999999999999999876543 5677754
No 492
>PRK13409 putative ATPase RIL; Provisional
Probab=94.04 E-value=0.27 Score=54.55 Aligned_cols=134 Identities=13% Similarity=0.099 Sum_probs=65.9
Q ss_pred EEEEEEccCCCcHHHHHHHHHccccccc--ccccE-EEEEEeC----CcccHHHH-------------HHHHHHHhcCCC
Q 007817 197 CVIPIVGMAGAGKTMLAREVYNDRAVQN--FKFDV-KAWVSVS----DDFDVLRI-------------SRALLESITSTN 256 (588)
Q Consensus 197 ~vv~I~G~gGiGKTtLA~~v~~~~~~~~--~~f~~-~~wv~v~----~~~~~~~~-------------~~~il~~l~~~~ 256 (588)
.+++|+|+.|+|||||++.++....... ..++. +.++.-. ...++.+. ..++++.++...
T Consensus 366 eiv~l~G~NGsGKSTLlk~L~Gl~~p~~G~I~~~~~i~y~~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~L~~l~l~~ 445 (590)
T PRK13409 366 EVIGIVGPNGIGKTTFAKLLAGVLKPDEGEVDPELKISYKPQYIKPDYDGTVEDLLRSITDDLGSSYYKSEIIKPLQLER 445 (590)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCceEEEEeeeEEEecccccCCCCCcHHHHHHHHhhhcChHHHHHHHHHHCCCHH
Confidence 5899999999999999999987543211 01111 1111100 01122211 123333333211
Q ss_pred -----CCCCC-HHHHHHHHHHHhcCCceeEEeccccc-cChhHHHHhhcccCC--CCCCcEEEEeecchhhhhhccccce
Q 007817 257 -----CDFKT-LNEVQVKLRIIVDGKKFLLVLDDVWN-ENYNLWEILKAPFMA--GARNSKIIVTTCHSNVASMMGSVEH 327 (588)
Q Consensus 257 -----~~~~~-~~~l~~~l~~~l~~k~~LLVlDdv~~-~~~~~~~~l~~~l~~--~~~gs~ilvTTR~~~v~~~~~~~~~ 327 (588)
...-+ .+...-.+...+..++=+++||.--+ -+...-..+...+.. ...|..||++|.+...+..+. +++
T Consensus 446 ~~~~~~~~LSGGe~QRvaiAraL~~~p~llLLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivsHD~~~~~~~a-Drv 524 (590)
T PRK13409 446 LLDKNVKDLSGGELQRVAIAACLSRDADLYLLDEPSAHLDVEQRLAVAKAIRRIAEEREATALVVDHDIYMIDYIS-DRL 524 (590)
T ss_pred HHhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhC-CEE
Confidence 01112 22223356666777889999997522 122222233332222 123566888888876655432 334
Q ss_pred eeCC
Q 007817 328 YNLK 331 (588)
Q Consensus 328 ~~l~ 331 (588)
+.+.
T Consensus 525 ivl~ 528 (590)
T PRK13409 525 MVFE 528 (590)
T ss_pred EEEc
Confidence 4443
No 493
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=94.04 E-value=0.039 Score=53.52 Aligned_cols=23 Identities=26% Similarity=0.432 Sum_probs=19.6
Q ss_pred EEccCCCcHHHHHHHHHcccccc
Q 007817 201 IVGMAGAGKTMLAREVYNDRAVQ 223 (588)
Q Consensus 201 I~G~gGiGKTtLA~~v~~~~~~~ 223 (588)
|+|++|+||||+++.+.+.....
T Consensus 1 ViGpaGSGKTT~~~~~~~~~~~~ 23 (238)
T PF03029_consen 1 VIGPAGSGKTTFCKGLSEWLESN 23 (238)
T ss_dssp -EESTTSSHHHHHHHHHHHHTTT
T ss_pred CCCCCCCCHHHHHHHHHHHHHhc
Confidence 68999999999999999877654
No 494
>PRK07196 fliI flagellum-specific ATP synthase; Validated
Probab=94.03 E-value=0.17 Score=53.27 Aligned_cols=86 Identities=16% Similarity=0.175 Sum_probs=46.9
Q ss_pred CeEEEEEEccCCCcHHHHHHHHHcccccccccccEEEEEEeCC-cccHHHHHHHHHHHhcCC-------CCCCCC-----
Q 007817 195 NFCVIPIVGMAGAGKTMLAREVYNDRAVQNFKFDVKAWVSVSD-DFDVLRISRALLESITST-------NCDFKT----- 261 (588)
Q Consensus 195 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~wv~v~~-~~~~~~~~~~il~~l~~~-------~~~~~~----- 261 (588)
.-..++|+|..|+|||||++.+..... .+..+...+.. .....++....+..-... ..+...
T Consensus 154 ~GQ~igI~G~sGaGKSTLl~~I~g~~~-----~dv~vig~IGerg~ev~ef~~~~l~~~gl~rsvvv~~~~d~s~~~rl~ 228 (434)
T PRK07196 154 KGQRVGLMAGSGVGKSVLLGMITRYTQ-----ADVVVVGLIGERGREVKEFIEHSLQAAGMAKSVVVAAPADESPLMRIK 228 (434)
T ss_pred cceEEEEECCCCCCccHHHHHHhcccC-----CCeEEEEEEeeecHHHHHHHHHHhhhcccceEEEEEecCCCChhhhHH
Confidence 346899999999999999999887442 22322222322 223333333433332211 011111
Q ss_pred HHHHHHHHHHHh--cCCceeEEeccc
Q 007817 262 LNEVQVKLRIIV--DGKKFLLVLDDV 285 (588)
Q Consensus 262 ~~~l~~~l~~~l--~~k~~LLVlDdv 285 (588)
..+....+.+++ +++.+||++||+
T Consensus 229 a~e~a~~iAEyfr~~g~~Vll~~Dsl 254 (434)
T PRK07196 229 ATELCHAIATYYRDKGHDVLLLVDSL 254 (434)
T ss_pred HHHHHHHHHHHhhhccCCEEEeecch
Confidence 122222344443 588999999998
No 495
>PF06414 Zeta_toxin: Zeta toxin; InterPro: IPR010488 This entry represents a domain originally identified in bacterial zeta toxin proteins, where it comprises the whole protein []. It has subsequently been found in a number of other proteins, such as polynucleotide kinase and 2',3'-cyclic-nucleotide 3'-phosphodiesterase. It appears to function as a kinase domain [, ].; GO: 0005524 ATP binding, 0016301 kinase activity; PDB: 2P5T_H 1GVN_B 3Q8X_D.
Probab=94.03 E-value=0.087 Score=49.67 Aligned_cols=102 Identities=16% Similarity=0.146 Sum_probs=47.2
Q ss_pred CCeEEEEEEccCCCcHHHHHHHHHcccccccccccEEEEEEeCCcccHHHHHHHHHHHhcCCCCC---CCCHHHHHHHHH
Q 007817 194 ANFCVIPIVGMAGAGKTMLAREVYNDRAVQNFKFDVKAWVSVSDDFDVLRISRALLESITSTNCD---FKTLNEVQVKLR 270 (588)
Q Consensus 194 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~il~~l~~~~~~---~~~~~~l~~~l~ 270 (588)
..+.++.|.|.+|+||||++..+..... ....+.++...-.....-...+... ...... ......+...+.
T Consensus 13 ~~P~~~i~aG~~GsGKSt~~~~~~~~~~-----~~~~v~i~~D~~r~~~p~~~~~~~~-~~~~~~~~~~~~a~~~~~~~~ 86 (199)
T PF06414_consen 13 EKPTLIIIAGQPGSGKSTLARQLLEEFG-----GGGIVVIDADEFRQFHPDYDELLKA-DPDEASELTQKEASRLAEKLI 86 (199)
T ss_dssp SS-EEEEEES-TTSTTHHHHHHHHHHT------TT-SEEE-GGGGGGGSTTHHHHHHH-HCCCTHHHHHHHHHHHHHHHH
T ss_pred cCCEEEEEeCCCCCCHHHHHHHhhhhcc-----CCCeEEEehHHHHHhccchhhhhhh-hhhhhHHHHHHHHHHHHHHHH
Confidence 5678999999999999999999987432 1334444433211111112222222 111100 011233444555
Q ss_pred HHhcCCceeEEeccccccChhHHHHhhcccCC
Q 007817 271 IIVDGKKFLLVLDDVWNENYNLWEILKAPFMA 302 (588)
Q Consensus 271 ~~l~~k~~LLVlDdv~~~~~~~~~~l~~~l~~ 302 (588)
...-.+++=+|+|..-... .....+...+..
T Consensus 87 ~~a~~~~~nii~E~tl~~~-~~~~~~~~~~k~ 117 (199)
T PF06414_consen 87 EYAIENRYNIIFEGTLSNP-SKLRKLIREAKA 117 (199)
T ss_dssp HHHHHCT--EEEE--TTSS-HHHHHHHHHHHC
T ss_pred HHHHHcCCCEEEecCCCCh-hHHHHHHHHHHc
Confidence 5555677788889875432 333334444443
No 496
>PRK14529 adenylate kinase; Provisional
Probab=94.01 E-value=0.095 Score=50.12 Aligned_cols=24 Identities=29% Similarity=0.325 Sum_probs=20.9
Q ss_pred EEEEccCCCcHHHHHHHHHccccc
Q 007817 199 IPIVGMAGAGKTMLAREVYNDRAV 222 (588)
Q Consensus 199 v~I~G~gGiGKTtLA~~v~~~~~~ 222 (588)
|.|.|++|+||||+|+.+......
T Consensus 3 I~l~G~PGsGK~T~a~~La~~~~~ 26 (223)
T PRK14529 3 ILIFGPNGSGKGTQGALVKKKYDL 26 (223)
T ss_pred EEEECCCCCCHHHHHHHHHHHHCC
Confidence 778999999999999999886543
No 497
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=94.00 E-value=0.33 Score=43.00 Aligned_cols=21 Identities=33% Similarity=0.582 Sum_probs=19.4
Q ss_pred EEEEccCCCcHHHHHHHHHcc
Q 007817 199 IPIVGMAGAGKTMLAREVYND 219 (588)
Q Consensus 199 v~I~G~gGiGKTtLA~~v~~~ 219 (588)
|+|+|.+|+|||||.+.+...
T Consensus 2 i~i~G~~~~GKssl~~~l~~~ 22 (159)
T cd04159 2 ITLVGLQNSGKTTLVNVIAGG 22 (159)
T ss_pred EEEEcCCCCCHHHHHHHHccC
Confidence 689999999999999999876
No 498
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=93.99 E-value=0.2 Score=51.88 Aligned_cols=41 Identities=27% Similarity=0.272 Sum_probs=30.5
Q ss_pred EEEEEEccCCCcHHHHHHHHHcccccccccccEEEEEEeCCc
Q 007817 197 CVIPIVGMAGAGKTMLAREVYNDRAVQNFKFDVKAWVSVSDD 238 (588)
Q Consensus 197 ~vv~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~wv~v~~~ 238 (588)
.++.|.|.+|.|||.||-.++.+..... .....++++....
T Consensus 2 ~v~~I~G~aGTGKTvla~~l~~~l~~~~-~~~~~~~l~~n~~ 42 (352)
T PF09848_consen 2 QVILITGGAGTGKTVLALNLAKELQNSE-EGKKVLYLCGNHP 42 (352)
T ss_pred eEEEEEecCCcCHHHHHHHHHHHhhccc-cCCceEEEEecch
Confidence 5899999999999999999999872122 3455666666554
No 499
>PRK06761 hypothetical protein; Provisional
Probab=93.97 E-value=0.064 Score=53.10 Aligned_cols=26 Identities=27% Similarity=0.325 Sum_probs=23.4
Q ss_pred EEEEEEccCCCcHHHHHHHHHccccc
Q 007817 197 CVIPIVGMAGAGKTMLAREVYNDRAV 222 (588)
Q Consensus 197 ~vv~I~G~gGiGKTtLA~~v~~~~~~ 222 (588)
++|.|.|++|+||||+++.+++....
T Consensus 4 ~lIvI~G~~GsGKTTla~~L~~~L~~ 29 (282)
T PRK06761 4 KLIIIEGLPGFGKSTTAKMLNDILSQ 29 (282)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhcCc
Confidence 58999999999999999999987654
No 500
>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.95 E-value=0.19 Score=55.05 Aligned_cols=23 Identities=30% Similarity=0.486 Sum_probs=20.1
Q ss_pred EEEEEEccCCCcHHHHHHHHHcc
Q 007817 197 CVIPIVGMAGAGKTMLAREVYND 219 (588)
Q Consensus 197 ~vv~I~G~gGiGKTtLA~~v~~~ 219 (588)
.++++||++|.||||+|..+-+-
T Consensus 495 e~vALVGPSGsGKSTiasLL~rf 517 (716)
T KOG0058|consen 495 EVVALVGPSGSGKSTIASLLLRF 517 (716)
T ss_pred CEEEEECCCCCCHHHHHHHHHHh
Confidence 69999999999999999777553
Done!