Query 007817
Match_columns 588
No_of_seqs 438 out of 3041
Neff 9.2
Searched_HMMs 29240
Date Mon Mar 25 11:14:23 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007817.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/007817hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2a5y_B CED-4; apoptosis; HET: 100.0 8.3E-53 2.8E-57 459.7 23.3 319 169-510 128-473 (549)
2 3sfz_A APAF-1, apoptotic pepti 100.0 2.4E-41 8.2E-46 405.0 28.2 314 164-509 119-453 (1249)
3 1vt4_I APAF-1 related killer D 100.0 2.3E-41 8E-46 374.9 22.5 286 170-502 129-437 (1221)
4 1z6t_A APAF-1, apoptotic prote 100.0 3.1E-37 1.1E-41 340.9 27.5 305 167-505 122-449 (591)
5 2qen_A Walker-type ATPase; unk 99.8 5E-17 1.7E-21 166.7 23.5 291 167-502 10-349 (350)
6 1w5s_A Origin recognition comp 99.7 3.4E-17 1.2E-21 172.1 19.1 316 168-497 21-387 (412)
7 2fna_A Conserved hypothetical 99.7 3.1E-16 1.1E-20 161.2 22.8 290 167-501 11-356 (357)
8 3qfl_A MLA10; coiled-coil, (CC 99.6 7.8E-16 2.7E-20 129.9 9.9 79 12-92 3-83 (115)
9 1fnn_A CDC6P, cell division co 99.6 8.8E-13 3E-17 137.1 26.2 298 169-485 17-352 (389)
10 2v1u_A Cell division control p 99.6 4.8E-13 1.6E-17 138.9 23.9 297 168-484 18-351 (387)
11 2qby_B CDC6 homolog 3, cell di 99.5 9E-13 3.1E-17 136.9 23.4 292 169-485 20-340 (384)
12 2qby_A CDC6 homolog 1, cell di 99.5 1.3E-12 4.5E-17 135.4 22.8 297 168-484 19-348 (386)
13 1njg_A DNA polymerase III subu 99.4 3.4E-12 1.2E-16 123.1 16.5 198 169-383 23-231 (250)
14 2chg_A Replication factor C sm 99.3 3.2E-11 1.1E-15 114.5 17.3 186 169-380 17-204 (226)
15 1hqc_A RUVB; extended AAA-ATPa 99.2 3.5E-11 1.2E-15 121.8 12.0 275 169-483 12-324 (324)
16 1sxj_B Activator 1 37 kDa subu 99.2 1.9E-10 6.6E-15 116.1 14.7 186 169-380 21-210 (323)
17 1iqp_A RFCS; clamp loader, ext 99.0 2.2E-09 7.5E-14 108.4 14.6 188 169-382 25-214 (327)
18 1jr3_A DNA polymerase III subu 98.9 1.7E-08 5.9E-13 103.9 15.8 195 169-380 16-221 (373)
19 3te6_A Regulatory protein SIR3 98.9 1.4E-08 4.8E-13 101.1 13.1 176 170-347 21-212 (318)
20 2chq_A Replication factor C sm 98.8 2.1E-08 7.2E-13 100.8 13.7 183 169-380 17-204 (319)
21 1sxj_D Activator 1 41 kDa subu 98.7 3E-07 1E-11 93.8 15.9 195 169-380 37-235 (353)
22 1jbk_A CLPB protein; beta barr 98.7 8.4E-08 2.9E-12 88.3 10.0 149 169-342 22-194 (195)
23 3pfi_A Holliday junction ATP-d 98.6 6.5E-07 2.2E-11 90.8 17.1 179 168-380 28-227 (338)
24 3bos_A Putative DNA replicatio 98.6 8.3E-08 2.8E-12 92.0 8.8 175 169-381 28-218 (242)
25 3uk6_A RUVB-like 2; hexameric 98.6 6.8E-07 2.3E-11 91.8 15.4 199 169-380 44-303 (368)
26 2z4s_A Chromosomal replication 98.5 1.3E-06 4.6E-11 91.7 15.3 164 196-379 130-305 (440)
27 3h4m_A Proteasome-activating n 98.5 2.3E-06 7.9E-11 84.4 16.2 186 168-379 16-230 (285)
28 1sxj_E Activator 1 40 kDa subu 98.5 9.8E-07 3.3E-11 90.1 13.8 198 169-381 14-238 (354)
29 1sxj_A Activator 1 95 kDa subu 98.5 1.1E-06 3.7E-11 94.5 14.3 197 169-380 39-253 (516)
30 1a5t_A Delta prime, HOLB; zinc 98.5 4.8E-06 1.7E-10 84.2 18.0 173 175-381 8-206 (334)
31 3u61_B DNA polymerase accessor 98.5 2E-06 6.9E-11 86.6 14.6 179 169-378 26-214 (324)
32 3pvs_A Replication-associated 98.4 4.7E-06 1.6E-10 87.5 17.1 199 169-399 26-244 (447)
33 3syl_A Protein CBBX; photosynt 98.4 2.5E-06 8.5E-11 85.2 13.3 161 170-347 32-218 (309)
34 2qz4_A Paraplegin; AAA+, SPG7, 98.4 5.6E-06 1.9E-10 80.4 15.6 187 169-379 6-221 (262)
35 1d2n_A N-ethylmaleimide-sensit 98.3 9.6E-06 3.3E-10 79.4 15.6 171 170-372 34-229 (272)
36 1sxj_C Activator 1 40 kDa subu 98.3 9.4E-06 3.2E-10 82.3 15.6 177 169-378 25-210 (340)
37 2p65_A Hypothetical protein PF 98.3 1.5E-06 5E-11 79.5 7.5 46 169-220 22-67 (187)
38 3n70_A Transport activator; si 98.3 1.3E-06 4.5E-11 76.8 6.8 114 170-315 2-115 (145)
39 3eie_A Vacuolar protein sortin 98.2 4.7E-05 1.6E-09 76.4 18.5 186 169-380 18-228 (322)
40 1l8q_A Chromosomal replication 98.2 1.5E-05 5.2E-10 80.1 14.9 169 178-375 23-203 (324)
41 2qp9_X Vacuolar protein sortin 98.2 2.7E-05 9.2E-10 79.3 16.5 187 169-380 51-261 (355)
42 1xwi_A SKD1 protein; VPS4B, AA 98.2 7.8E-05 2.7E-09 74.8 18.7 189 169-381 12-224 (322)
43 3b9p_A CG5977-PA, isoform A; A 98.1 9.7E-05 3.3E-09 73.1 18.7 186 169-380 21-233 (297)
44 3d8b_A Fidgetin-like protein 1 98.1 4.7E-05 1.6E-09 77.6 16.6 187 169-381 84-296 (357)
45 3ec2_A DNA replication protein 98.1 4E-06 1.4E-10 76.6 7.3 121 174-315 19-142 (180)
46 2gno_A DNA polymerase III, gam 98.1 2.8E-05 9.6E-10 77.2 13.3 148 174-346 2-152 (305)
47 2zan_A Vacuolar protein sortin 98.1 6.3E-05 2.2E-09 79.0 16.6 188 169-380 134-345 (444)
48 1qvr_A CLPB protein; coiled co 98.1 6.9E-06 2.3E-10 93.8 9.6 155 169-345 170-344 (854)
49 3pxg_A Negative regulator of g 98.0 1.9E-05 6.5E-10 83.6 11.5 148 169-346 180-338 (468)
50 3cf0_A Transitional endoplasmi 98.0 0.00011 3.8E-09 72.9 16.2 181 169-375 15-223 (301)
51 3vfd_A Spastin; ATPase, microt 98.0 0.0002 6.7E-09 73.9 18.3 188 168-380 114-326 (389)
52 1r6b_X CLPA protein; AAA+, N-t 98.0 9E-05 3.1E-09 83.5 16.0 156 169-346 186-362 (758)
53 4fcw_A Chaperone protein CLPB; 98.0 5.3E-05 1.8E-09 75.5 12.6 121 170-300 18-143 (311)
54 3hu3_A Transitional endoplasmi 97.9 0.0001 3.4E-09 78.2 14.6 185 169-379 204-414 (489)
55 1in4_A RUVB, holliday junction 97.9 0.00017 5.7E-09 72.8 15.2 178 169-380 25-223 (334)
56 2c9o_A RUVB-like 1; hexameric 97.9 9.3E-05 3.2E-09 78.1 13.4 98 278-380 297-410 (456)
57 3co5_A Putative two-component 97.9 9.3E-06 3.2E-10 71.1 4.3 110 170-315 5-115 (143)
58 2bjv_A PSP operon transcriptio 97.8 4E-05 1.4E-09 74.6 9.0 132 169-315 6-150 (265)
59 3pxi_A Negative regulator of g 97.8 6.6E-05 2.2E-09 84.6 11.9 149 169-346 180-338 (758)
60 1lv7_A FTSH; alpha/beta domain 97.8 0.00066 2.3E-08 65.5 17.4 184 169-378 12-223 (257)
61 2w58_A DNAI, primosome compone 97.8 2.1E-05 7.1E-10 73.2 6.3 118 177-315 37-158 (202)
62 1ojl_A Transcriptional regulat 97.8 5.2E-05 1.8E-09 75.4 8.5 161 169-344 2-188 (304)
63 1ofh_A ATP-dependent HSL prote 97.7 0.00025 8.7E-09 70.3 12.6 52 169-220 15-74 (310)
64 3pxi_A Negative regulator of g 97.7 8.2E-05 2.8E-09 83.8 9.1 156 169-346 491-675 (758)
65 2kjq_A DNAA-related protein; s 97.6 3E-05 1E-09 68.3 4.1 86 197-315 37-124 (149)
66 4b4t_K 26S protease regulatory 97.6 0.00098 3.4E-08 68.9 15.5 178 169-372 172-378 (428)
67 4b4t_J 26S protease regulatory 97.6 0.0011 3.7E-08 67.6 15.6 179 169-373 148-354 (405)
68 4b4t_L 26S protease subunit RP 97.6 0.0016 5.5E-08 67.4 16.4 179 169-373 181-387 (437)
69 2ce7_A Cell division protein F 97.5 0.00098 3.4E-08 70.0 14.6 179 169-373 16-221 (476)
70 2r62_A Cell division protease 97.5 0.0001 3.4E-09 71.8 6.0 157 169-346 11-196 (268)
71 4b4t_H 26S protease regulatory 97.4 0.0041 1.4E-07 64.3 16.1 178 169-372 209-414 (467)
72 3m6a_A ATP-dependent protease 97.3 0.0005 1.7E-08 74.0 9.7 165 169-346 81-266 (543)
73 4b4t_M 26S protease regulatory 97.3 0.0015 5.2E-08 67.5 12.6 177 169-372 181-386 (434)
74 1r6b_X CLPA protein; AAA+, N-t 97.3 0.00049 1.7E-08 77.5 9.4 135 169-315 458-607 (758)
75 4b4t_I 26S protease regulatory 97.3 0.0025 8.5E-08 65.3 13.3 177 169-372 182-387 (437)
76 3t15_A Ribulose bisphosphate c 97.3 0.0013 4.5E-08 64.8 10.9 28 194-221 34-61 (293)
77 2r44_A Uncharacterized protein 97.2 0.00087 3E-08 67.3 9.4 151 170-347 28-199 (331)
78 1qvr_A CLPB protein; coiled co 97.2 0.001 3.5E-08 75.8 10.9 135 170-315 559-710 (854)
79 2cvh_A DNA repair and recombin 97.0 0.0023 7.7E-08 59.8 9.7 83 197-286 21-115 (220)
80 2qgz_A Helicase loader, putati 97.0 0.00031 1.1E-08 69.9 3.6 44 175-221 134-177 (308)
81 3cf2_A TER ATPase, transitiona 97.0 0.0096 3.3E-07 66.3 15.5 180 169-374 204-408 (806)
82 2vhj_A Ntpase P4, P4; non- hyd 97.0 0.00041 1.4E-08 68.4 3.7 67 197-286 124-192 (331)
83 2b8t_A Thymidine kinase; deoxy 96.9 0.00068 2.3E-08 63.7 4.7 113 196-317 12-127 (223)
84 3hr8_A Protein RECA; alpha and 96.9 0.0028 9.6E-08 63.9 9.0 84 195-286 60-149 (356)
85 3io5_A Recombination and repai 96.8 0.0029 1E-07 62.1 8.6 84 198-287 30-122 (333)
86 1um8_A ATP-dependent CLP prote 96.8 0.009 3.1E-07 61.0 12.7 24 197-220 73-96 (376)
87 1ypw_A Transitional endoplasmi 96.8 0.0041 1.4E-07 70.1 10.6 157 169-346 204-385 (806)
88 2dhr_A FTSH; AAA+ protein, hex 96.8 0.017 5.7E-07 61.0 14.5 176 168-373 30-236 (499)
89 1ixz_A ATP-dependent metallopr 96.8 0.023 8E-07 54.3 14.5 157 169-346 16-199 (254)
90 3lw7_A Adenylate kinase relate 96.7 0.019 6.7E-07 51.0 12.7 20 197-216 2-21 (179)
91 2x8a_A Nuclear valosin-contain 96.7 0.016 5.5E-07 56.3 12.7 126 199-346 47-191 (274)
92 2w0m_A SSO2452; RECA, SSPF, un 96.6 0.0047 1.6E-07 58.1 8.3 114 197-316 24-168 (235)
93 1jr3_D DNA polymerase III, del 96.6 0.015 5E-07 58.5 12.0 157 196-379 18-184 (343)
94 1xp8_A RECA protein, recombina 96.5 0.0068 2.3E-07 61.5 9.2 82 197-286 75-162 (366)
95 1iy2_A ATP-dependent metallopr 96.5 0.019 6.4E-07 55.9 11.9 180 168-373 39-245 (278)
96 1ye8_A Protein THEP1, hypothet 96.5 0.0088 3E-07 54.0 8.8 24 198-221 2-25 (178)
97 2zr9_A Protein RECA, recombina 96.5 0.0082 2.8E-07 60.5 9.2 84 196-287 61-150 (349)
98 2z43_A DNA repair and recombin 96.4 0.0094 3.2E-07 59.5 9.5 88 197-285 108-212 (324)
99 1rz3_A Hypothetical protein rb 96.4 0.0035 1.2E-07 57.9 5.6 44 174-220 3-46 (201)
100 1v5w_A DMC1, meiotic recombina 96.4 0.014 4.7E-07 58.8 10.3 58 195-253 121-181 (343)
101 1n0w_A DNA repair protein RAD5 96.3 0.0081 2.8E-07 56.9 7.8 89 197-286 25-129 (243)
102 2px0_A Flagellar biosynthesis 96.3 0.012 4E-07 58.0 8.9 86 196-285 105-191 (296)
103 1u94_A RECA protein, recombina 96.3 0.011 3.8E-07 59.7 8.9 83 196-286 63-151 (356)
104 2i1q_A DNA repair and recombin 96.2 0.0086 2.9E-07 59.7 7.8 57 196-253 98-167 (322)
105 1cr0_A DNA primase/helicase; R 96.1 0.017 6E-07 56.6 9.4 38 197-236 36-73 (296)
106 1odf_A YGR205W, hypothetical 3 96.0 0.025 8.7E-07 55.3 10.0 82 194-275 29-117 (290)
107 2orw_A Thymidine kinase; TMTK, 96.0 0.00084 2.9E-08 61.2 -0.6 106 197-316 4-113 (184)
108 2cbz_A Multidrug resistance-as 96.0 0.054 1.8E-06 51.3 11.7 24 197-220 32-55 (237)
109 3tqc_A Pantothenate kinase; bi 95.9 0.022 7.7E-07 56.4 9.1 48 172-221 70-117 (321)
110 3dm5_A SRP54, signal recogniti 95.8 0.052 1.8E-06 56.1 11.5 28 195-222 99-126 (443)
111 1g5t_A COB(I)alamin adenosyltr 95.8 0.017 5.8E-07 52.6 7.0 117 197-316 29-163 (196)
112 2pze_A Cystic fibrosis transme 95.8 0.1 3.4E-06 49.1 12.7 25 197-221 35-59 (229)
113 3bh0_A DNAB-like replicative h 95.8 0.043 1.5E-06 54.4 10.5 50 197-251 69-118 (315)
114 3ice_A Transcription terminati 95.7 0.013 4.4E-07 59.1 6.2 55 179-239 162-216 (422)
115 1qhx_A CPT, protein (chloramph 95.7 0.005 1.7E-07 55.4 3.0 24 197-220 4-27 (178)
116 3c8u_A Fructokinase; YP_612366 95.7 0.0081 2.8E-07 55.7 4.5 41 177-221 7-47 (208)
117 3nbx_X ATPase RAVA; AAA+ ATPas 95.6 0.0099 3.4E-07 62.9 5.5 44 170-221 23-66 (500)
118 1gvn_B Zeta; postsegregational 95.6 0.011 3.9E-07 57.8 5.5 42 177-219 15-56 (287)
119 1ly1_A Polynucleotide kinase; 95.6 0.0065 2.2E-07 54.6 3.5 22 197-218 3-24 (181)
120 1zp6_A Hypothetical protein AT 95.6 0.007 2.4E-07 55.1 3.6 24 196-219 9-32 (191)
121 3kb2_A SPBC2 prophage-derived 95.5 0.0065 2.2E-07 54.1 3.2 24 197-220 2-25 (173)
122 1vma_A Cell division protein F 95.5 0.054 1.9E-06 53.3 10.1 87 195-285 103-195 (306)
123 1pzn_A RAD51, DNA repair and r 95.5 0.024 8.1E-07 57.2 7.6 45 195-240 130-178 (349)
124 3uie_A Adenylyl-sulfate kinase 95.4 0.0091 3.1E-07 55.0 3.8 27 195-221 24-50 (200)
125 3vaa_A Shikimate kinase, SK; s 95.4 0.0075 2.6E-07 55.5 3.2 24 197-220 26-49 (199)
126 3kl4_A SRP54, signal recogniti 95.4 0.077 2.6E-06 54.8 11.0 89 195-286 96-189 (433)
127 3upu_A ATP-dependent DNA helic 95.4 0.019 6.6E-07 60.2 6.6 107 198-317 47-166 (459)
128 3lda_A DNA repair protein RAD5 95.4 0.047 1.6E-06 55.9 9.3 56 197-253 179-237 (400)
129 2p5t_B PEZT; postsegregational 95.4 0.013 4.3E-07 56.3 4.7 44 176-220 13-56 (253)
130 4a1f_A DNAB helicase, replicat 95.3 0.043 1.5E-06 54.8 8.5 51 197-252 47-97 (338)
131 2rhm_A Putative kinase; P-loop 95.3 0.0099 3.4E-07 54.1 3.7 26 195-220 4-29 (193)
132 1kgd_A CASK, peripheral plasma 95.3 0.009 3.1E-07 54.0 3.3 24 197-220 6-29 (180)
133 1kag_A SKI, shikimate kinase I 95.3 0.0073 2.5E-07 54.0 2.7 24 197-220 5-28 (173)
134 1knq_A Gluconate kinase; ALFA/ 95.3 0.012 4.3E-07 52.6 4.1 24 196-219 8-31 (175)
135 3hws_A ATP-dependent CLP prote 95.3 0.013 4.4E-07 59.5 4.7 51 170-220 16-75 (363)
136 3trf_A Shikimate kinase, SK; a 95.2 0.009 3.1E-07 54.1 3.0 24 197-220 6-29 (185)
137 1nks_A Adenylate kinase; therm 95.2 0.01 3.5E-07 53.9 3.4 25 197-221 2-26 (194)
138 3tau_A Guanylate kinase, GMP k 95.2 0.011 3.6E-07 55.0 3.4 25 196-220 8-32 (208)
139 1ex7_A Guanylate kinase; subst 95.2 0.0065 2.2E-07 55.3 1.9 24 197-220 2-25 (186)
140 3t61_A Gluconokinase; PSI-biol 95.2 0.0086 3E-07 55.1 2.7 25 196-220 18-42 (202)
141 4eun_A Thermoresistant glucoki 95.1 0.01 3.6E-07 54.6 3.2 25 196-220 29-53 (200)
142 1sky_E F1-ATPase, F1-ATP synth 95.0 0.051 1.8E-06 56.4 8.3 88 197-286 152-255 (473)
143 2xxa_A Signal recognition part 95.0 0.14 4.9E-06 52.9 11.8 30 194-223 98-127 (433)
144 1uf9_A TT1252 protein; P-loop, 95.0 0.014 4.7E-07 53.6 3.7 26 194-219 6-31 (203)
145 1ypw_A Transitional endoplasmi 95.0 0.011 3.9E-07 66.5 3.7 157 169-346 477-661 (806)
146 3asz_A Uridine kinase; cytidin 95.0 0.014 4.6E-07 54.2 3.7 25 195-219 5-29 (211)
147 4gp7_A Metallophosphoesterase; 95.0 0.012 4.1E-07 52.7 3.2 23 196-218 9-31 (171)
148 1ukz_A Uridylate kinase; trans 95.0 0.015 5.1E-07 53.5 3.9 26 195-220 14-39 (203)
149 3tr0_A Guanylate kinase, GMP k 95.0 0.012 4.2E-07 54.1 3.3 23 197-219 8-30 (205)
150 3umf_A Adenylate kinase; rossm 95.0 0.013 4.6E-07 54.6 3.5 27 194-220 27-53 (217)
151 2ze6_A Isopentenyl transferase 95.0 0.012 4.1E-07 56.5 3.3 24 197-220 2-25 (253)
152 1kht_A Adenylate kinase; phosp 95.0 0.012 4.2E-07 53.3 3.2 25 197-221 4-28 (192)
153 2bdt_A BH3686; alpha-beta prot 95.0 0.013 4.6E-07 53.1 3.5 22 197-218 3-24 (189)
154 1tev_A UMP-CMP kinase; ploop, 94.9 0.014 4.8E-07 53.1 3.5 24 197-220 4-27 (196)
155 3iij_A Coilin-interacting nucl 94.9 0.011 3.7E-07 53.3 2.6 25 196-220 11-35 (180)
156 2qt1_A Nicotinamide riboside k 94.9 0.016 5.5E-07 53.5 3.8 25 195-219 20-44 (207)
157 2j41_A Guanylate kinase; GMP, 94.9 0.014 4.7E-07 53.8 3.3 24 197-220 7-30 (207)
158 2qor_A Guanylate kinase; phosp 94.9 0.011 3.8E-07 54.6 2.6 25 196-220 12-36 (204)
159 2j37_W Signal recognition part 94.9 0.19 6.6E-06 52.9 12.4 29 194-222 99-127 (504)
160 1zuh_A Shikimate kinase; alpha 94.9 0.013 4.6E-07 52.0 3.0 26 195-220 6-31 (168)
161 2c95_A Adenylate kinase 1; tra 94.8 0.014 4.9E-07 53.1 3.2 25 196-220 9-33 (196)
162 3a00_A Guanylate kinase, GMP k 94.8 0.012 3.9E-07 53.6 2.5 24 197-220 2-25 (186)
163 2jaq_A Deoxyguanosine kinase; 94.8 0.015 5E-07 53.4 3.2 23 198-220 2-24 (205)
164 1y63_A LMAJ004144AAA protein; 94.8 0.015 5.1E-07 52.7 3.2 24 196-219 10-33 (184)
165 3a4m_A L-seryl-tRNA(SEC) kinas 94.8 0.017 5.6E-07 55.7 3.6 25 196-220 4-28 (260)
166 3jvv_A Twitching mobility prot 94.8 0.019 6.7E-07 57.9 4.2 111 197-319 124-234 (356)
167 3cm0_A Adenylate kinase; ATP-b 94.8 0.019 6.4E-07 51.9 3.8 25 196-220 4-28 (186)
168 3e70_C DPA, signal recognition 94.7 0.12 4.2E-06 51.3 10.0 28 195-222 128-155 (328)
169 2yvu_A Probable adenylyl-sulfa 94.7 0.021 7.1E-07 51.7 4.0 28 195-222 12-39 (186)
170 2r6a_A DNAB helicase, replicat 94.7 0.081 2.8E-06 55.3 9.1 49 197-249 204-252 (454)
171 1cke_A CK, MSSA, protein (cyti 94.7 0.016 5.3E-07 54.4 3.2 24 197-220 6-29 (227)
172 2cdn_A Adenylate kinase; phosp 94.7 0.018 6.2E-07 52.9 3.6 26 195-220 19-44 (201)
173 1g8p_A Magnesium-chelatase 38 94.7 0.011 3.9E-07 59.3 2.3 47 169-221 24-70 (350)
174 2plr_A DTMP kinase, probable t 94.7 0.019 6.4E-07 53.1 3.6 25 197-221 5-29 (213)
175 2if2_A Dephospho-COA kinase; a 94.7 0.016 5.6E-07 53.2 3.2 21 198-218 3-23 (204)
176 1via_A Shikimate kinase; struc 94.7 0.016 5.4E-07 52.0 3.0 23 198-220 6-28 (175)
177 2iyv_A Shikimate kinase, SK; t 94.7 0.012 4.1E-07 53.2 2.2 24 197-220 3-26 (184)
178 1jjv_A Dephospho-COA kinase; P 94.7 0.019 6.4E-07 53.0 3.6 22 197-218 3-24 (206)
179 2ga8_A Hypothetical 39.9 kDa p 94.6 0.034 1.2E-06 55.6 5.6 47 173-221 3-49 (359)
180 1xjc_A MOBB protein homolog; s 94.6 0.015 5E-07 51.9 2.7 28 195-222 3-30 (169)
181 1qf9_A UMP/CMP kinase, protein 94.6 0.023 7.9E-07 51.5 4.0 25 196-220 6-30 (194)
182 1uj2_A Uridine-cytidine kinase 94.6 0.019 6.6E-07 54.9 3.6 26 195-220 21-46 (252)
183 1lvg_A Guanylate kinase, GMP k 94.6 0.014 4.8E-07 53.7 2.5 24 197-220 5-28 (198)
184 3tlx_A Adenylate kinase 2; str 94.6 0.025 8.6E-07 53.8 4.4 26 195-220 28-53 (243)
185 2ffh_A Protein (FFH); SRP54, s 94.6 0.12 4E-06 53.3 9.6 27 196-222 98-124 (425)
186 2ck3_D ATP synthase subunit be 94.6 0.17 5.7E-06 52.5 10.7 65 180-251 142-207 (482)
187 2bbw_A Adenylate kinase 4, AK4 94.6 0.018 6.1E-07 54.9 3.2 25 196-220 27-51 (246)
188 3ney_A 55 kDa erythrocyte memb 94.5 0.019 6.4E-07 52.6 3.1 25 196-220 19-43 (197)
189 2q6t_A DNAB replication FORK h 94.5 0.13 4.5E-06 53.5 10.1 52 197-252 201-252 (444)
190 3cmu_A Protein RECA, recombina 94.5 0.072 2.5E-06 64.7 8.9 84 195-286 1426-1515(2050)
191 1e6c_A Shikimate kinase; phosp 94.5 0.015 5.2E-07 51.8 2.4 24 197-220 3-26 (173)
192 2bwj_A Adenylate kinase 5; pho 94.5 0.02 6.7E-07 52.4 3.2 24 197-220 13-36 (199)
193 2vli_A Antibiotic resistance p 94.5 0.012 4.1E-07 53.0 1.7 25 196-220 5-29 (183)
194 3aez_A Pantothenate kinase; tr 94.4 0.023 8E-07 56.2 3.8 27 195-221 89-115 (312)
195 1q57_A DNA primase/helicase; d 94.4 0.12 4.2E-06 54.7 9.8 53 196-252 242-294 (503)
196 1fx0_B ATP synthase beta chain 94.4 0.089 3.1E-06 54.7 8.3 99 180-285 154-275 (498)
197 1znw_A Guanylate kinase, GMP k 94.4 0.021 7.2E-07 52.8 3.3 24 197-220 21-44 (207)
198 2pt5_A Shikimate kinase, SK; a 94.4 0.021 7.3E-07 50.5 3.2 23 198-220 2-24 (168)
199 1nn5_A Similar to deoxythymidy 94.4 0.021 7.3E-07 52.8 3.3 27 196-222 9-35 (215)
200 2hf9_A Probable hydrogenase ni 94.4 0.037 1.3E-06 51.6 5.0 26 195-220 37-62 (226)
201 2pez_A Bifunctional 3'-phospho 94.4 0.025 8.4E-07 50.9 3.6 25 196-220 5-29 (179)
202 3e1s_A Exodeoxyribonuclease V, 94.4 0.093 3.2E-06 56.5 8.7 104 197-314 205-314 (574)
203 3l0o_A Transcription terminati 94.4 0.014 4.8E-07 58.7 2.0 55 178-238 162-216 (427)
204 2pbr_A DTMP kinase, thymidylat 94.4 0.022 7.4E-07 51.8 3.2 23 198-220 2-24 (195)
205 2jeo_A Uridine-cytidine kinase 94.3 0.026 8.8E-07 53.8 3.8 26 195-220 24-49 (245)
206 1aky_A Adenylate kinase; ATP:A 94.3 0.022 7.4E-07 53.2 3.2 25 196-220 4-28 (220)
207 2grj_A Dephospho-COA kinase; T 94.3 0.029 1E-06 51.2 3.9 26 194-219 10-35 (192)
208 2yhs_A FTSY, cell division pro 94.3 0.12 4E-06 54.1 8.8 27 195-221 292-318 (503)
209 2wwf_A Thymidilate kinase, put 94.2 0.022 7.6E-07 52.6 3.1 27 196-222 10-36 (212)
210 1zd8_A GTP:AMP phosphotransfer 94.2 0.021 7.2E-07 53.6 2.9 25 196-220 7-31 (227)
211 1htw_A HI0065; nucleotide-bind 94.2 0.028 9.7E-07 49.5 3.5 24 197-220 34-57 (158)
212 3fwy_A Light-independent proto 94.2 0.026 9E-07 55.9 3.7 40 194-236 46-85 (314)
213 3fb4_A Adenylate kinase; psych 94.2 0.023 8E-07 52.7 3.0 23 198-220 2-24 (216)
214 2zts_A Putative uncharacterize 94.2 0.078 2.7E-06 50.1 6.8 40 197-238 31-70 (251)
215 1j8m_F SRP54, signal recogniti 94.1 0.16 5.5E-06 49.7 9.2 87 196-285 98-189 (297)
216 1rj9_A FTSY, signal recognitio 94.1 0.026 9E-07 55.6 3.5 28 195-222 101-128 (304)
217 1z6g_A Guanylate kinase; struc 94.1 0.022 7.4E-07 53.3 2.7 24 197-220 24-47 (218)
218 2z0h_A DTMP kinase, thymidylat 94.1 0.027 9.2E-07 51.3 3.2 24 198-221 2-25 (197)
219 3dl0_A Adenylate kinase; phosp 94.1 0.026 8.8E-07 52.5 3.1 23 198-220 2-24 (216)
220 2v54_A DTMP kinase, thymidylat 94.1 0.028 9.7E-07 51.5 3.4 24 197-220 5-28 (204)
221 2f6r_A COA synthase, bifunctio 94.0 0.032 1.1E-06 54.3 3.9 24 195-218 74-97 (281)
222 4e22_A Cytidylate kinase; P-lo 94.0 0.027 9.3E-07 53.9 3.3 24 197-220 28-51 (252)
223 1zak_A Adenylate kinase; ATP:A 94.0 0.021 7.3E-07 53.4 2.5 25 196-220 5-29 (222)
224 1s96_A Guanylate kinase, GMP k 94.0 0.028 9.6E-07 52.5 3.3 25 196-220 16-40 (219)
225 1ls1_A Signal recognition part 94.0 0.14 4.7E-06 50.2 8.4 86 197-285 99-189 (295)
226 1m7g_A Adenylylsulfate kinase; 94.0 0.032 1.1E-06 51.7 3.7 26 196-221 25-50 (211)
227 1sq5_A Pantothenate kinase; P- 93.9 0.065 2.2E-06 52.9 5.9 26 195-220 79-104 (308)
228 1gtv_A TMK, thymidylate kinase 93.9 0.016 5.4E-07 53.7 1.4 24 198-221 2-25 (214)
229 3llm_A ATP-dependent RNA helic 93.9 0.27 9.2E-06 46.2 10.0 90 197-287 77-187 (235)
230 2wsm_A Hydrogenase expression/ 93.9 0.044 1.5E-06 50.9 4.5 40 175-220 15-54 (221)
231 4a74_A DNA repair and recombin 93.9 0.032 1.1E-06 52.2 3.5 43 196-238 25-70 (231)
232 1vht_A Dephospho-COA kinase; s 93.9 0.036 1.2E-06 51.6 3.8 23 196-218 4-26 (218)
233 2ged_A SR-beta, signal recogni 93.9 0.048 1.6E-06 49.3 4.5 26 195-220 47-72 (193)
234 3b5x_A Lipid A export ATP-bind 93.8 0.22 7.7E-06 53.8 10.5 24 197-220 370-393 (582)
235 3cmu_A Protein RECA, recombina 93.8 0.12 4.2E-06 62.8 8.9 84 196-287 383-472 (2050)
236 2ehv_A Hypothetical protein PH 93.8 0.032 1.1E-06 52.9 3.3 22 197-218 31-52 (251)
237 3a8t_A Adenylate isopentenyltr 93.7 0.041 1.4E-06 54.7 3.9 26 195-220 39-64 (339)
238 1tue_A Replication protein E1; 93.7 0.046 1.6E-06 50.1 4.0 40 177-221 44-83 (212)
239 3be4_A Adenylate kinase; malar 93.7 0.026 9E-07 52.6 2.4 24 197-220 6-29 (217)
240 3sr0_A Adenylate kinase; phosp 93.6 0.034 1.2E-06 51.4 3.0 23 198-220 2-24 (206)
241 3b9q_A Chloroplast SRP recepto 93.6 0.042 1.4E-06 54.1 3.7 27 195-221 99-125 (302)
242 3cmw_A Protein RECA, recombina 93.6 0.12 4E-06 62.1 8.1 84 196-287 383-472 (1706)
243 2f1r_A Molybdopterin-guanine d 93.6 0.022 7.5E-07 51.0 1.5 26 197-222 3-28 (171)
244 2i3b_A HCR-ntpase, human cance 93.6 0.033 1.1E-06 50.8 2.7 24 198-221 3-26 (189)
245 3tif_A Uncharacterized ABC tra 93.5 0.036 1.2E-06 52.4 3.1 24 197-220 32-55 (235)
246 2onk_A Molybdate/tungstate ABC 93.5 0.037 1.3E-06 52.5 3.2 24 197-220 25-48 (240)
247 2pcj_A ABC transporter, lipopr 93.5 0.037 1.3E-06 51.9 3.1 24 197-220 31-54 (224)
248 3ake_A Cytidylate kinase; CMP 93.5 0.04 1.4E-06 50.6 3.2 23 198-220 4-26 (208)
249 3lnc_A Guanylate kinase, GMP k 93.5 0.027 9.2E-07 53.0 2.0 23 197-219 28-51 (231)
250 3d3q_A TRNA delta(2)-isopenten 93.4 0.041 1.4E-06 54.8 3.4 24 197-220 8-31 (340)
251 3p32_A Probable GTPase RV1496/ 93.4 0.077 2.6E-06 53.5 5.5 40 178-221 65-104 (355)
252 1tf7_A KAIC; homohexamer, hexa 93.4 0.048 1.6E-06 58.3 4.1 112 197-316 282-417 (525)
253 3exa_A TRNA delta(2)-isopenten 93.4 0.047 1.6E-06 53.5 3.7 23 197-219 4-26 (322)
254 3r20_A Cytidylate kinase; stru 93.4 0.039 1.4E-06 51.9 3.0 25 196-220 9-33 (233)
255 1np6_A Molybdopterin-guanine d 93.4 0.041 1.4E-06 49.3 3.0 27 195-221 5-31 (174)
256 3nwj_A ATSK2; P loop, shikimat 93.3 0.033 1.1E-06 53.2 2.5 24 197-220 49-72 (250)
257 2j9r_A Thymidine kinase; TK1, 93.3 0.1 3.5E-06 48.1 5.6 109 196-317 28-139 (214)
258 3foz_A TRNA delta(2)-isopenten 93.3 0.053 1.8E-06 53.1 3.8 25 195-219 9-33 (316)
259 3crm_A TRNA delta(2)-isopenten 93.3 0.045 1.5E-06 54.1 3.4 23 197-219 6-28 (323)
260 1e4v_A Adenylate kinase; trans 93.2 0.045 1.5E-06 50.8 3.2 23 198-220 2-24 (214)
261 2xb4_A Adenylate kinase; ATP-b 93.2 0.045 1.5E-06 51.2 3.2 23 198-220 2-24 (223)
262 3zvl_A Bifunctional polynucleo 93.2 0.046 1.6E-06 56.5 3.6 27 194-220 256-282 (416)
263 1ak2_A Adenylate kinase isoenz 93.2 0.044 1.5E-06 51.6 3.1 25 196-220 16-40 (233)
264 3cf2_A TER ATPase, transitiona 93.2 0.13 4.5E-06 57.3 7.2 157 169-346 477-661 (806)
265 3bgw_A DNAB-like replicative h 93.1 0.34 1.2E-05 50.3 10.0 51 196-251 197-247 (444)
266 3gfo_A Cobalt import ATP-bindi 93.1 0.045 1.5E-06 53.1 3.1 23 197-219 35-57 (275)
267 3k1j_A LON protease, ATP-depen 93.1 0.062 2.1E-06 58.5 4.6 45 169-221 41-85 (604)
268 2wji_A Ferrous iron transport 93.1 0.065 2.2E-06 47.2 3.9 23 197-219 4-26 (165)
269 1b0u_A Histidine permease; ABC 93.1 0.046 1.6E-06 52.6 3.1 24 197-220 33-56 (262)
270 3vr4_D V-type sodium ATPase su 93.1 0.12 4E-06 53.3 6.2 89 197-285 152-257 (465)
271 1xx6_A Thymidine kinase; NESG, 93.1 0.034 1.2E-06 50.7 2.1 110 196-317 8-119 (191)
272 3b85_A Phosphate starvation-in 93.0 0.037 1.3E-06 51.2 2.3 23 197-219 23-45 (208)
273 1ltq_A Polynucleotide kinase; 93.0 0.052 1.8E-06 53.3 3.5 22 197-218 3-24 (301)
274 4akg_A Glutathione S-transfera 93.0 0.41 1.4E-05 60.2 12.0 146 199-369 1270-1452(2695)
275 1yrb_A ATP(GTP)binding protein 93.0 0.063 2.1E-06 51.4 4.0 28 194-221 12-39 (262)
276 3lv8_A DTMP kinase, thymidylat 93.0 0.12 4.1E-06 48.8 5.8 36 196-233 27-62 (236)
277 4g1u_C Hemin import ATP-bindin 93.0 0.049 1.7E-06 52.5 3.1 24 197-220 38-61 (266)
278 1ji0_A ABC transporter; ATP bi 93.0 0.05 1.7E-06 51.6 3.1 24 197-220 33-56 (240)
279 3gqb_B V-type ATP synthase bet 92.9 0.12 4.1E-06 53.2 6.1 88 197-285 148-260 (464)
280 2og2_A Putative signal recogni 92.9 0.058 2E-06 54.3 3.7 27 195-221 156-182 (359)
281 2d2e_A SUFC protein; ABC-ATPas 92.9 0.054 1.9E-06 51.7 3.3 23 197-219 30-52 (250)
282 1oix_A RAS-related protein RAB 92.9 0.055 1.9E-06 49.1 3.2 25 196-220 29-53 (191)
283 1g6h_A High-affinity branched- 92.9 0.051 1.7E-06 52.2 3.1 24 197-220 34-57 (257)
284 1mv5_A LMRA, multidrug resista 92.9 0.055 1.9E-06 51.4 3.3 24 197-220 29-52 (243)
285 2olj_A Amino acid ABC transpor 92.9 0.052 1.8E-06 52.2 3.1 24 197-220 51-74 (263)
286 2zej_A Dardarin, leucine-rich 92.8 0.051 1.7E-06 48.9 2.9 22 198-219 4-25 (184)
287 1sgw_A Putative ABC transporte 92.8 0.045 1.5E-06 50.9 2.5 24 197-220 36-59 (214)
288 3ld9_A DTMP kinase, thymidylat 92.8 0.15 5.1E-06 47.6 6.1 28 195-222 20-47 (223)
289 1g41_A Heat shock protein HSLU 92.8 0.099 3.4E-06 54.1 5.3 53 169-221 15-75 (444)
290 2vp4_A Deoxynucleoside kinase; 92.8 0.06 2.1E-06 50.6 3.4 25 195-219 19-43 (230)
291 2ff7_A Alpha-hemolysin translo 92.8 0.054 1.8E-06 51.6 3.1 24 197-220 36-59 (247)
292 2zu0_C Probable ATP-dependent 92.8 0.058 2E-06 52.0 3.3 23 197-219 47-69 (267)
293 2dyk_A GTP-binding protein; GT 92.7 0.069 2.4E-06 46.4 3.5 24 197-220 2-25 (161)
294 1vpl_A ABC transporter, ATP-bi 92.7 0.056 1.9E-06 51.8 3.1 24 197-220 42-65 (256)
295 3b60_A Lipid A export ATP-bind 92.7 0.3 1E-05 52.7 9.2 24 197-220 370-393 (582)
296 2dr3_A UPF0273 protein PH0284; 92.7 0.085 2.9E-06 49.8 4.4 39 197-238 24-62 (247)
297 2wjg_A FEOB, ferrous iron tran 92.6 0.098 3.4E-06 46.9 4.5 25 195-219 6-30 (188)
298 2qmh_A HPR kinase/phosphorylas 92.6 0.063 2.1E-06 48.9 3.1 24 197-220 35-58 (205)
299 2ixe_A Antigen peptide transpo 92.6 0.058 2E-06 52.2 3.1 24 197-220 46-69 (271)
300 2ghi_A Transport protein; mult 92.6 0.059 2E-06 51.8 3.1 24 197-220 47-70 (260)
301 1a7j_A Phosphoribulokinase; tr 92.6 0.03 1E-06 54.8 1.0 26 195-220 4-29 (290)
302 2f9l_A RAB11B, member RAS onco 92.6 0.06 2.1E-06 49.1 3.0 25 196-220 5-29 (199)
303 2eyu_A Twitching motility prot 92.5 0.072 2.5E-06 51.2 3.6 109 196-319 25-136 (261)
304 2qi9_C Vitamin B12 import ATP- 92.5 0.061 2.1E-06 51.3 3.1 24 197-220 27-50 (249)
305 1zu4_A FTSY; GTPase, signal re 92.5 0.075 2.6E-06 52.7 3.8 28 195-222 104-131 (320)
306 2v9p_A Replication protein E1; 92.5 0.066 2.3E-06 52.6 3.3 25 196-220 126-150 (305)
307 2c61_A A-type ATP synthase non 92.5 0.13 4.4E-06 53.3 5.6 89 197-285 153-258 (469)
308 2yz2_A Putative ABC transporte 92.4 0.063 2.2E-06 51.8 3.1 24 197-220 34-57 (266)
309 4tmk_A Protein (thymidylate ki 92.4 0.17 5.9E-06 46.9 5.9 52 197-250 4-55 (213)
310 2nq2_C Hypothetical ABC transp 92.4 0.063 2.2E-06 51.3 3.0 24 197-220 32-55 (253)
311 2ihy_A ABC transporter, ATP-bi 92.4 0.064 2.2E-06 52.1 3.1 24 197-220 48-71 (279)
312 3qf4_A ABC transporter, ATP-bi 92.4 0.51 1.8E-05 50.9 10.6 24 197-220 370-393 (587)
313 4eaq_A DTMP kinase, thymidylat 92.3 0.085 2.9E-06 49.6 3.8 28 195-222 25-52 (229)
314 2ce2_X GTPase HRAS; signaling 92.3 0.07 2.4E-06 46.4 3.0 23 198-220 5-27 (166)
315 2r9v_A ATP synthase subunit al 92.3 0.25 8.6E-06 51.5 7.5 84 197-285 176-276 (515)
316 1z2a_A RAS-related protein RAB 92.3 0.095 3.2E-06 45.8 3.8 25 196-220 5-29 (168)
317 2qe7_A ATP synthase subunit al 92.2 0.35 1.2E-05 50.3 8.5 96 180-285 151-263 (502)
318 1nlf_A Regulatory protein REPA 92.2 0.073 2.5E-06 51.6 3.3 24 197-220 31-54 (279)
319 4edh_A DTMP kinase, thymidylat 92.1 0.23 8E-06 45.9 6.5 28 196-223 6-33 (213)
320 2ocp_A DGK, deoxyguanosine kin 92.1 0.087 3E-06 49.8 3.6 25 196-220 2-26 (241)
321 2v3c_C SRP54, signal recogniti 92.1 0.083 2.8E-06 54.7 3.6 28 195-222 98-125 (432)
322 1q3t_A Cytidylate kinase; nucl 92.1 0.081 2.8E-06 49.9 3.3 26 195-220 15-40 (236)
323 3sop_A Neuronal-specific septi 92.1 0.079 2.7E-06 51.2 3.2 23 198-220 4-26 (270)
324 2xau_A PRE-mRNA-splicing facto 92.0 1.1 3.7E-05 50.0 12.9 34 177-218 98-131 (773)
325 3dzd_A Transcriptional regulat 92.0 0.13 4.5E-06 52.1 4.9 131 170-315 130-272 (368)
326 4a82_A Cystic fibrosis transme 92.0 0.23 7.9E-06 53.6 7.2 24 197-220 368-391 (578)
327 2nzj_A GTP-binding protein REM 91.9 0.12 4E-06 45.6 4.1 25 196-220 4-28 (175)
328 3vkw_A Replicase large subunit 91.9 0.66 2.3E-05 47.8 10.0 26 193-218 158-183 (446)
329 1svm_A Large T antigen; AAA+ f 91.9 0.083 2.8E-06 53.6 3.3 25 195-219 168-192 (377)
330 2lkc_A Translation initiation 91.8 0.1 3.5E-06 46.2 3.6 25 195-219 7-31 (178)
331 2pjz_A Hypothetical protein ST 91.8 0.083 2.8E-06 50.8 3.1 24 197-220 31-54 (263)
332 1nij_A Hypothetical protein YJ 91.8 0.082 2.8E-06 52.4 3.1 26 195-220 3-28 (318)
333 2hxs_A RAB-26, RAS-related pro 91.8 0.15 5.2E-06 45.0 4.7 26 195-220 5-30 (178)
334 1ny5_A Transcriptional regulat 91.8 0.98 3.3E-05 45.9 11.2 47 170-220 138-184 (387)
335 3con_A GTPase NRAS; structural 91.7 0.088 3E-06 47.4 3.0 24 197-220 22-45 (190)
336 1u8z_A RAS-related protein RAL 91.7 0.09 3.1E-06 45.8 3.0 25 196-220 4-28 (168)
337 1svi_A GTP-binding protein YSX 91.7 0.11 3.8E-06 46.9 3.7 26 195-220 22-47 (195)
338 3end_A Light-independent proto 91.7 0.1 3.5E-06 51.4 3.7 42 194-238 39-80 (307)
339 1u0j_A DNA replication protein 91.7 0.17 5.7E-06 48.5 5.0 38 178-219 90-127 (267)
340 3cmw_A Protein RECA, recombina 91.7 0.29 1E-05 58.8 8.0 83 195-285 1430-1518(1706)
341 1p5z_B DCK, deoxycytidine kina 91.6 0.069 2.4E-06 51.3 2.3 26 195-220 23-48 (263)
342 3q72_A GTP-binding protein RAD 91.6 0.084 2.9E-06 46.2 2.7 22 198-219 4-25 (166)
343 2erx_A GTP-binding protein DI- 91.6 0.098 3.4E-06 45.9 3.1 23 197-219 4-26 (172)
344 1kao_A RAP2A; GTP-binding prot 91.6 0.095 3.2E-06 45.6 3.0 24 197-220 4-27 (167)
345 1z08_A RAS-related protein RAB 91.6 0.095 3.3E-06 46.0 3.0 26 195-220 5-30 (170)
346 1nrj_B SR-beta, signal recogni 91.6 0.1 3.5E-06 48.2 3.4 26 195-220 11-36 (218)
347 3hjn_A DTMP kinase, thymidylat 91.6 0.25 8.4E-06 45.2 5.9 27 198-224 2-28 (197)
348 3eph_A TRNA isopentenyltransfe 91.6 0.1 3.5E-06 53.0 3.5 23 197-219 3-25 (409)
349 3nh6_A ATP-binding cassette SU 91.6 0.07 2.4E-06 52.5 2.3 24 197-220 81-104 (306)
350 3kta_A Chromosome segregation 91.5 0.1 3.5E-06 46.7 3.3 22 197-218 27-48 (182)
351 2fn4_A P23, RAS-related protei 91.5 0.15 5E-06 45.2 4.3 26 195-220 8-33 (181)
352 1c1y_A RAS-related protein RAP 91.5 0.098 3.4E-06 45.7 3.0 24 197-220 4-27 (167)
353 1ek0_A Protein (GTP-binding pr 91.5 0.098 3.3E-06 45.8 3.0 23 198-220 5-27 (170)
354 2ck3_A ATP synthase subunit al 91.5 0.27 9.2E-06 51.3 6.6 100 180-285 151-271 (510)
355 1z0j_A RAB-22, RAS-related pro 91.5 0.1 3.4E-06 45.8 3.0 24 197-220 7-30 (170)
356 3vr4_A V-type sodium ATPase ca 91.5 0.57 1.9E-05 49.5 9.0 58 180-247 221-279 (600)
357 4gzl_A RAS-related C3 botulinu 91.5 0.12 4.1E-06 47.4 3.6 25 196-220 30-54 (204)
358 2gj8_A MNME, tRNA modification 91.4 0.12 4.2E-06 45.8 3.6 24 197-220 5-28 (172)
359 1ky3_A GTP-binding protein YPT 91.4 0.13 4.5E-06 45.6 3.8 26 195-220 7-32 (182)
360 1fzq_A ADP-ribosylation factor 91.4 0.12 4E-06 46.3 3.5 25 195-219 15-39 (181)
361 3q85_A GTP-binding protein REM 91.3 0.14 4.8E-06 44.8 3.9 23 197-219 3-25 (169)
362 3ihw_A Centg3; RAS, centaurin, 91.3 0.1 3.5E-06 46.9 3.0 26 195-220 19-44 (184)
363 3fvq_A Fe(3+) IONS import ATP- 91.3 0.1 3.6E-06 52.4 3.3 24 197-220 31-54 (359)
364 2bbs_A Cystic fibrosis transme 91.3 0.099 3.4E-06 51.0 3.1 24 197-220 65-88 (290)
365 3pqc_A Probable GTP-binding pr 91.3 0.12 4.2E-06 46.4 3.5 25 196-220 23-47 (195)
366 2www_A Methylmalonic aciduria 91.3 0.12 4.2E-06 51.9 3.8 26 195-220 73-98 (349)
367 1r8s_A ADP-ribosylation factor 91.3 0.1 3.5E-06 45.5 2.9 21 199-219 3-23 (164)
368 2cxx_A Probable GTP-binding pr 91.3 0.11 3.7E-06 46.6 3.1 23 198-220 3-25 (190)
369 1wms_A RAB-9, RAB9, RAS-relate 91.3 0.11 3.7E-06 46.0 3.0 26 195-220 6-31 (177)
370 1m7b_A RND3/RHOE small GTP-bin 91.2 0.14 4.7E-06 45.9 3.8 26 195-220 6-31 (184)
371 1w36_D RECD, exodeoxyribonucle 91.2 0.34 1.2E-05 52.6 7.5 119 197-319 165-302 (608)
372 3tui_C Methionine import ATP-b 91.2 0.11 3.7E-06 52.3 3.3 24 197-220 55-78 (366)
373 2aka_B Dynamin-1; fusion prote 91.2 0.23 7.8E-06 48.4 5.7 43 178-220 8-50 (299)
374 3c5c_A RAS-like protein 12; GD 91.1 0.11 3.9E-06 46.7 3.0 26 195-220 20-45 (187)
375 2r8r_A Sensor protein; KDPD, P 91.1 0.21 7.2E-06 46.5 4.8 28 197-224 7-34 (228)
376 3tw8_B RAS-related protein RAB 91.0 0.1 3.6E-06 46.2 2.7 26 195-220 8-33 (181)
377 1r2q_A RAS-related protein RAB 91.0 0.12 4E-06 45.2 3.0 24 196-219 6-29 (170)
378 1m2o_B GTP-binding protein SAR 90.9 0.12 4E-06 46.8 3.0 23 197-219 24-46 (190)
379 1z47_A CYSA, putative ABC-tran 90.9 0.12 4.2E-06 51.9 3.3 24 197-220 42-65 (355)
380 4dsu_A GTPase KRAS, isoform 2B 90.9 0.12 4.2E-06 46.2 3.0 24 197-220 5-28 (189)
381 4bas_A ADP-ribosylation factor 90.9 0.14 4.9E-06 46.2 3.5 27 194-220 15-41 (199)
382 2yv5_A YJEQ protein; hydrolase 90.9 0.19 6.6E-06 49.3 4.7 34 178-221 156-189 (302)
383 1z0f_A RAB14, member RAS oncog 90.8 0.12 4.2E-06 45.6 3.0 26 195-220 14-39 (179)
384 2qm8_A GTPase/ATPase; G protei 90.8 0.15 5E-06 51.1 3.8 26 195-220 54-79 (337)
385 2bme_A RAB4A, RAS-related prot 90.8 0.12 4.2E-06 46.1 3.0 26 195-220 9-34 (186)
386 2y8e_A RAB-protein 6, GH09086P 90.8 0.13 4.3E-06 45.6 3.0 23 197-219 15-37 (179)
387 1g16_A RAS-related protein SEC 90.8 0.17 5.7E-06 44.3 3.8 24 197-220 4-27 (170)
388 1upt_A ARL1, ADP-ribosylation 90.7 0.16 5.6E-06 44.4 3.7 25 196-220 7-31 (171)
389 1f6b_A SAR1; gtpases, N-termin 90.7 0.14 4.9E-06 46.6 3.4 23 197-219 26-48 (198)
390 3gmt_A Adenylate kinase; ssgci 90.7 0.12 4E-06 48.4 2.8 25 196-220 8-32 (230)
391 3rlf_A Maltose/maltodextrin im 90.7 0.13 4.4E-06 52.1 3.3 24 197-220 30-53 (381)
392 3mfy_A V-type ATP synthase alp 90.7 0.45 1.5E-05 50.1 7.4 59 180-248 216-275 (588)
393 2axn_A 6-phosphofructo-2-kinas 90.7 0.14 4.9E-06 54.4 3.8 27 195-221 34-60 (520)
394 3bc1_A RAS-related protein RAB 90.7 0.13 4.5E-06 46.1 3.0 26 195-220 10-35 (195)
395 1mh1_A RAC1; GTP-binding, GTPa 90.6 0.13 4.5E-06 45.8 3.0 25 196-220 5-29 (186)
396 2iwr_A Centaurin gamma 1; ANK 90.6 0.099 3.4E-06 46.4 2.2 24 196-219 7-30 (178)
397 3t1o_A Gliding protein MGLA; G 90.6 0.13 4.5E-06 46.3 3.0 25 196-220 14-38 (198)
398 1lw7_A Transcriptional regulat 90.6 0.13 4.5E-06 52.0 3.3 25 196-220 170-194 (365)
399 3v9p_A DTMP kinase, thymidylat 90.6 0.25 8.4E-06 46.3 5.0 26 197-222 26-51 (227)
400 3kkq_A RAS-related protein M-R 90.6 0.2 6.9E-06 44.6 4.3 26 195-220 17-42 (183)
401 2yyz_A Sugar ABC transporter, 90.6 0.13 4.6E-06 51.7 3.3 24 197-220 30-53 (359)
402 2oil_A CATX-8, RAS-related pro 90.6 0.13 4.6E-06 46.3 3.0 26 195-220 24-49 (193)
403 2a9k_A RAS-related protein RAL 90.6 0.14 4.6E-06 45.7 3.0 25 196-220 18-42 (187)
404 2efe_B Small GTP-binding prote 90.5 0.14 4.7E-06 45.5 3.0 25 196-220 12-36 (181)
405 2it1_A 362AA long hypothetical 90.5 0.14 4.7E-06 51.6 3.3 24 197-220 30-53 (362)
406 1pui_A ENGB, probable GTP-bind 90.5 0.088 3E-06 48.3 1.8 25 196-220 26-50 (210)
407 1cp2_A CP2, nitrogenase iron p 90.5 0.15 5.1E-06 48.9 3.5 37 197-236 2-38 (269)
408 3bwd_D RAC-like GTP-binding pr 90.5 0.14 4.7E-06 45.5 3.0 24 197-220 9-32 (182)
409 3f9v_A Minichromosome maintena 90.5 0.084 2.9E-06 57.2 1.8 23 198-220 329-351 (595)
410 1tq4_A IIGP1, interferon-induc 90.4 0.14 4.8E-06 52.5 3.3 25 195-219 68-92 (413)
411 2fz4_A DNA repair protein RAD2 90.4 0.97 3.3E-05 42.4 9.1 100 199-313 111-226 (237)
412 1g29_1 MALK, maltose transport 90.4 0.14 4.8E-06 51.8 3.3 24 197-220 30-53 (372)
413 3iev_A GTP-binding protein ERA 90.4 0.16 5.6E-06 50.0 3.7 28 193-220 7-34 (308)
414 2bov_A RAla, RAS-related prote 90.4 0.2 6.9E-06 45.5 4.1 26 195-220 13-38 (206)
415 2cjw_A GTP-binding protein GEM 90.4 0.14 4.9E-06 46.3 3.1 23 196-218 6-28 (192)
416 3t5g_A GTP-binding protein RHE 90.4 0.15 5.2E-06 45.3 3.2 26 195-220 5-30 (181)
417 3oaa_A ATP synthase subunit al 90.4 0.81 2.8E-05 47.6 8.9 84 197-285 163-263 (513)
418 2h92_A Cytidylate kinase; ross 90.4 0.12 4.2E-06 47.8 2.7 23 197-219 4-26 (219)
419 1v43_A Sugar-binding transport 90.3 0.15 5E-06 51.7 3.3 23 197-219 38-60 (372)
420 2g6b_A RAS-related protein RAB 90.3 0.15 5E-06 45.3 3.0 26 195-220 9-34 (180)
421 2atv_A RERG, RAS-like estrogen 90.3 0.14 4.9E-06 46.3 3.0 25 196-220 28-52 (196)
422 2qu8_A Putative nucleolar GTP- 90.3 0.18 6.1E-06 47.1 3.7 26 195-220 28-53 (228)
423 1m8p_A Sulfate adenylyltransfe 90.3 0.28 9.6E-06 52.7 5.7 28 194-221 394-421 (573)
424 1gwn_A RHO-related GTP-binding 90.3 0.14 4.9E-06 46.9 3.0 26 195-220 27-52 (205)
425 2fg5_A RAB-22B, RAS-related pr 90.2 0.15 5.1E-06 46.0 3.0 25 196-220 23-47 (192)
426 2ew1_A RAS-related protein RAB 90.2 0.15 5.1E-06 46.7 3.0 26 195-220 25-50 (201)
427 1zbd_A Rabphilin-3A; G protein 90.2 0.16 5.3E-06 46.3 3.1 25 196-220 8-32 (203)
428 3llu_A RAS-related GTP-binding 90.2 0.15 5.3E-06 46.1 3.1 23 197-219 21-43 (196)
429 2orv_A Thymidine kinase; TP4A 90.2 0.38 1.3E-05 44.8 5.7 106 196-317 19-127 (234)
430 3clv_A RAB5 protein, putative; 90.1 0.15 5.2E-06 46.1 3.0 25 196-220 7-31 (208)
431 3d31_A Sulfate/molybdate ABC t 90.1 0.12 4.2E-06 51.7 2.5 24 197-220 27-50 (348)
432 1fx0_A ATP synthase alpha chai 90.1 0.31 1.1E-05 50.8 5.6 84 197-285 164-264 (507)
433 2gf9_A RAS-related protein RAB 90.1 0.16 5.3E-06 45.7 3.0 25 196-220 22-46 (189)
434 2p67_A LAO/AO transport system 90.1 0.18 6.1E-06 50.5 3.7 26 195-220 55-80 (341)
435 1zd9_A ADP-ribosylation factor 90.1 0.16 5.4E-06 45.7 3.0 25 196-220 22-46 (188)
436 3oes_A GTPase rhebl1; small GT 90.1 0.15 5.3E-06 46.3 3.0 26 195-220 23-48 (201)
437 3dz8_A RAS-related protein RAB 90.1 0.15 5.1E-06 46.0 2.9 24 197-220 24-47 (191)
438 1ega_A Protein (GTP-binding pr 90.0 0.16 5.6E-06 49.8 3.4 25 195-219 7-31 (301)
439 2ewv_A Twitching motility prot 90.0 0.17 5.8E-06 51.3 3.6 108 196-317 136-245 (372)
440 3lxx_A GTPase IMAP family memb 90.0 0.21 7E-06 47.1 3.9 26 195-220 28-53 (239)
441 4b3f_X DNA-binding protein smu 90.0 0.4 1.4E-05 52.5 6.7 63 176-250 193-255 (646)
442 2afh_E Nitrogenase iron protei 90.0 0.18 6.3E-06 49.0 3.7 38 197-237 3-40 (289)
443 3reg_A RHO-like small GTPase; 90.0 0.16 5.5E-06 45.9 3.0 26 195-220 22-47 (194)
444 2qnr_A Septin-2, protein NEDD5 90.0 0.14 4.8E-06 50.3 2.8 22 198-219 20-41 (301)
445 1vg8_A RAS-related protein RAB 90.0 0.21 7.1E-06 45.5 3.8 26 195-220 7-32 (207)
446 2o52_A RAS-related protein RAB 89.9 0.16 5.6E-06 46.2 3.1 26 195-220 24-49 (200)
447 2a5j_A RAS-related protein RAB 89.9 0.16 5.6E-06 45.7 3.0 25 196-220 21-45 (191)
448 3tkl_A RAS-related protein RAB 89.9 0.16 5.6E-06 45.7 3.0 26 195-220 15-40 (196)
449 2q3h_A RAS homolog gene family 89.9 0.17 5.7E-06 46.0 3.1 25 196-220 20-44 (201)
450 3cbq_A GTP-binding protein REM 89.9 0.17 5.9E-06 45.9 3.2 24 195-218 22-45 (195)
451 2fh5_B SR-beta, signal recogni 89.9 0.17 5.7E-06 46.6 3.1 25 196-220 7-31 (214)
452 3gqb_A V-type ATP synthase alp 89.8 0.45 1.6E-05 50.0 6.5 46 197-247 222-268 (578)
453 2p5s_A RAS and EF-hand domain 89.8 0.17 5.8E-06 46.0 3.0 26 195-220 27-52 (199)
454 3tqf_A HPR(Ser) kinase; transf 89.8 0.21 7.3E-06 44.3 3.4 23 197-219 17-39 (181)
455 1ksh_A ARF-like protein 2; sma 89.7 0.21 7E-06 44.7 3.5 26 195-220 17-42 (186)
456 2h17_A ADP-ribosylation factor 89.7 0.16 5.6E-06 45.2 2.9 24 196-219 21-44 (181)
457 1p9r_A General secretion pathw 89.7 0.33 1.1E-05 49.9 5.5 24 197-220 168-191 (418)
458 3fdi_A Uncharacterized protein 89.7 0.18 6.2E-06 46.2 3.1 25 197-221 7-31 (201)
459 1moz_A ARL1, ADP-ribosylation 89.7 0.15 5.3E-06 45.3 2.6 25 195-219 17-41 (183)
460 1x3s_A RAS-related protein RAB 89.7 0.18 6E-06 45.4 3.0 24 197-220 16-39 (195)
461 1zj6_A ADP-ribosylation factor 89.7 0.24 8.2E-06 44.3 3.9 24 196-219 16-39 (187)
462 2j1l_A RHO-related GTP-binding 89.6 0.18 6E-06 46.6 3.1 26 195-220 33-58 (214)
463 4dkx_A RAS-related protein RAB 89.6 0.18 6E-06 46.9 3.0 22 198-219 15-36 (216)
464 2il1_A RAB12; G-protein, GDP, 89.6 0.16 5.5E-06 45.9 2.7 25 196-220 26-50 (192)
465 3gd7_A Fusion complex of cysti 89.6 0.18 6.1E-06 51.4 3.3 23 197-219 48-70 (390)
466 1oxx_K GLCV, glucose, ABC tran 89.6 0.11 3.9E-06 52.1 1.8 24 197-220 32-55 (353)
467 1bif_A 6-phosphofructo-2-kinas 89.6 0.19 6.5E-06 52.7 3.6 26 196-221 39-64 (469)
468 2bcg_Y Protein YP2, GTP-bindin 89.5 0.18 6.1E-06 46.0 3.0 26 195-220 7-32 (206)
469 1g8f_A Sulfate adenylyltransfe 89.5 0.21 7.1E-06 52.7 3.8 27 195-221 394-420 (511)
470 1z06_A RAS-related protein RAB 89.5 0.24 8.2E-06 44.4 3.8 26 195-220 19-44 (189)
471 1u0l_A Probable GTPase ENGC; p 89.5 0.28 9.7E-06 48.1 4.6 35 178-221 160-194 (301)
472 2gza_A Type IV secretion syste 89.5 0.15 5.3E-06 51.4 2.7 25 197-221 176-200 (361)
473 3thx_A DNA mismatch repair pro 89.4 0.66 2.3E-05 52.7 8.0 21 196-216 662-682 (934)
474 2obl_A ESCN; ATPase, hydrolase 89.4 0.18 6.3E-06 50.5 3.2 25 197-221 72-96 (347)
475 4f4c_A Multidrug resistance pr 89.4 1.1 3.7E-05 53.3 10.2 25 197-221 445-469 (1321)
476 2b6h_A ADP-ribosylation factor 89.4 0.22 7.6E-06 45.0 3.5 24 196-219 29-52 (192)
477 2rcn_A Probable GTPase ENGC; Y 89.4 0.19 6.7E-06 50.4 3.3 25 197-221 216-240 (358)
478 3def_A T7I23.11 protein; chlor 89.3 0.44 1.5E-05 45.5 5.7 26 195-220 35-60 (262)
479 1x6v_B Bifunctional 3'-phospho 89.3 0.23 7.7E-06 53.7 4.0 26 195-220 51-76 (630)
480 3cr8_A Sulfate adenylyltranfer 89.3 0.15 5.3E-06 54.4 2.6 26 196-221 369-394 (552)
481 3ch4_B Pmkase, phosphomevalona 89.3 0.27 9.1E-06 44.9 3.8 24 195-218 10-33 (202)
482 2fv8_A H6, RHO-related GTP-bin 89.2 0.19 6.6E-06 45.9 3.0 24 197-220 26-49 (207)
483 2atx_A Small GTP binding prote 89.2 0.2 6.7E-06 45.2 3.0 25 196-220 18-42 (194)
484 1f2t_A RAD50 ABC-ATPase; DNA d 89.2 0.26 8.9E-06 42.7 3.6 22 197-218 24-45 (149)
485 3k53_A Ferrous iron transport 89.2 0.23 8E-06 47.8 3.7 25 196-220 3-27 (271)
486 4hlc_A DTMP kinase, thymidylat 89.2 0.58 2E-05 42.9 6.2 25 197-221 3-27 (205)
487 2hup_A RAS-related protein RAB 89.1 0.2 6.8E-06 45.7 3.0 26 195-220 28-53 (201)
488 1h65_A Chloroplast outer envel 89.1 0.47 1.6E-05 45.6 5.7 26 195-220 38-63 (270)
489 2gf0_A GTP-binding protein DI- 89.1 0.27 9.3E-06 44.3 3.9 24 196-219 8-31 (199)
490 3cph_A RAS-related protein SEC 89.1 0.2 7E-06 45.8 3.0 25 196-220 20-44 (213)
491 2h57_A ADP-ribosylation factor 89.1 0.16 5.5E-06 45.7 2.3 24 197-220 22-45 (190)
492 2g3y_A GTP-binding protein GEM 89.0 0.28 9.7E-06 45.3 4.0 24 195-218 36-59 (211)
493 2j0v_A RAC-like GTP-binding pr 89.0 0.2 6.9E-06 45.9 3.0 26 195-220 8-33 (212)
494 2gco_A H9, RHO-related GTP-bin 89.0 0.21 7.1E-06 45.5 3.0 24 197-220 26-49 (201)
495 2fu5_C RAS-related protein RAB 88.9 0.13 4.4E-06 45.8 1.5 25 195-219 7-31 (183)
496 1jwy_B Dynamin A GTPase domain 88.9 0.39 1.3E-05 47.1 5.2 42 178-220 7-48 (315)
497 3q3j_B RHO-related GTP-binding 88.8 0.22 7.5E-06 46.0 3.0 24 197-220 28-51 (214)
498 1c9k_A COBU, adenosylcobinamid 88.7 0.21 7.3E-06 44.7 2.7 21 199-219 2-22 (180)
499 2f7s_A C25KG, RAS-related prot 88.6 0.23 7.9E-06 45.7 3.1 26 195-220 24-49 (217)
500 2pt7_A CAG-ALFA; ATPase, prote 88.6 0.17 6E-06 50.3 2.3 105 197-317 172-276 (330)
No 1
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=100.00 E-value=8.3e-53 Score=459.71 Aligned_cols=319 Identities=17% Similarity=0.238 Sum_probs=257.7
Q ss_pred CceeechhhHHHHHHHHhcCCCCCCCCeEEEEEEccCCCcHHHHHHHHHc--ccccccccccEEEEEEeCCcc--cHHHH
Q 007817 169 RAVYGRDEDKARMLEMVLSDDPTTDANFCVIPIVGMAGAGKTMLAREVYN--DRAVQNFKFDVKAWVSVSDDF--DVLRI 244 (588)
Q Consensus 169 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~--~~~~~~~~f~~~~wv~v~~~~--~~~~~ 244 (588)
+..|||+.++++|.++|.... .+..++|+|+||||+||||||+++|+ +.+++. +|++++||++++.+ +...+
T Consensus 128 ~~~~GR~~~~~~l~~~L~~~~---~~~~~vv~I~G~gGvGKTtLA~~v~~~~~~~~~~-~F~~~~wv~vs~~~~~~~~~~ 203 (549)
T 2a5y_B 128 MTCYIREYHVDRVIKKLDEMC---DLDSFFLFLHGRAGSGKSVIASQALSKSDQLIGI-NYDSIVWLKDSGTAPKSTFDL 203 (549)
T ss_dssp CCSCCCHHHHHHHHHHHHHHT---TSSSEEEEEECSTTSSHHHHHHHHHHHCSSTBTT-TBSEEEEEECCCCSTTHHHHH
T ss_pred CccCCchHHHHHHHHHHhccc---CCCceEEEEEcCCCCCHHHHHHHHHHhhhHHHhc-cCCcEEEEEECCCCCCCHHHH
Confidence 333599999999999997652 24579999999999999999999998 567777 89999999999885 89999
Q ss_pred HHHHHHHhcCCCC-------CCCCHHHHHHHHHHHhcCC-ceeEEeccccccChhHHHHhhcccCCCCCCcEEEEeecch
Q 007817 245 SRALLESITSTNC-------DFKTLNEVQVKLRIIVDGK-KFLLVLDDVWNENYNLWEILKAPFMAGARNSKIIVTTCHS 316 (588)
Q Consensus 245 ~~~il~~l~~~~~-------~~~~~~~l~~~l~~~l~~k-~~LLVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTTR~~ 316 (588)
+..|+.+++.... +..+.+.+...+++.|+++ ||||||||||+.+...|... +||+||||||++
T Consensus 204 ~~~il~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~~kr~LlVLDdv~~~~~~~~~~~--------~gs~ilvTTR~~ 275 (549)
T 2a5y_B 204 FTDILLMLKSEDDLLNFPSVEHVTSVVLKRMICNALIDRPNTLFVFDDVVQEETIRWAQE--------LRLRCLVTTRDV 275 (549)
T ss_dssp HHHHHHHHTTTSCCTTCCCCTTCCHHHHHHHHHHHHTTSTTEEEEEEEECCHHHHHHHHH--------TTCEEEEEESBG
T ss_pred HHHHHHHHhcCcccccccccccccHHHHHHHHHHHHcCCCcEEEEEECCCCchhhccccc--------CCCEEEEEcCCH
Confidence 9999999986521 1234567788999999996 99999999998643334422 699999999999
Q ss_pred hhhhhcc-ccceeeCCCCCHHHHHHHHHHhhcCCCCCCCChhHHHHHHHHHHHhCCCchHHHHhhhhccCCCCHHHHHHH
Q 007817 317 NVASMMG-SVEHYNLKLLSDEYCWSVFVKHAFERRDAGAHQFSKLFRKKIVAKCGGLPLAVSTLGGLLRTRHTEDAWEEI 395 (588)
Q Consensus 317 ~v~~~~~-~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~i~~~I~~~c~GlPLai~~~~~~L~~~~~~~~w~~~ 395 (588)
.++..++ ...+|+|++|+.++||+||.++++... .++.+.+++++|+++|+|+||||+++|+.|+.+ .. .|...
T Consensus 276 ~v~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~---~~~~~~~~~~~I~~~c~GlPLAl~~~g~~l~~~-~w-~~~~~ 350 (549)
T 2a5y_B 276 EISNAASQTCEFIEVTSLEIDECYDFLEAYGMPMP---VGEKEEDVLNKTIELSSGNPATLMMFFKSCEPK-TF-EKMAQ 350 (549)
T ss_dssp GGGGGCCSCEEEEECCCCCHHHHHHHHHHTSCCCC-----CHHHHHHHHHHHHHTTCHHHHHHHHTTCCSS-SH-HHHHH
T ss_pred HHHHHcCCCCeEEECCCCCHHHHHHHHHHHhcCCC---CchhHHHHHHHHHHHhCCChHHHHHHHHHhccc-hH-HHHHH
Confidence 9998876 446799999999999999999987542 246788899999999999999999999999876 33 33333
Q ss_pred HhcccCCCCCcccHHHHHHHHhccCchhHHHHHh-----------HhcccCCCceeehhHHHHHHHHc--CCcccCCCCC
Q 007817 396 VSSKMWDLPQQTDILAVLRLSYHYLPSHLKRCFT-----------YCAIFPKNYEFEKNELVFLWMGE--GMIQQSRTGK 462 (588)
Q Consensus 396 ~~~~~~~~~~~~~i~~~l~~sy~~L~~~~k~cf~-----------~ls~Fp~~~~i~~~~Li~~W~ae--g~i~~~~~~~ 462 (588)
+.+..+..+ ...+.++|.+||+.||+++|.||+ |||+||+++.|+ +++|+|+ ||+.....+.
T Consensus 351 l~~~l~~~~-~~~i~~~l~~Sy~~L~~~lk~~f~~Ls~~er~l~~~ls~fp~~~~i~----i~~w~a~~~G~i~~~~~~~ 425 (549)
T 2a5y_B 351 LNNKLESRG-LVGVECITPYSYKSLAMALQRCVEVLSDEDRSALAFAVVMPPGVDIP----VKLWSCVIPVDICSNEEEQ 425 (549)
T ss_dssp HHHHHHHHC-SSTTCCCSSSSSSSHHHHHHHHHHTSCHHHHHHTTGGGSSCTTCCEE----HHHHHHHSCC-------CC
T ss_pred hHHHhhccc-HHHHHHHHhcccccccHHHHHHHhccchhhhhHhhheeeeCCCCeee----eeeeeeeccceeccCCCCC
Confidence 433322211 346778899999999999999999 999999999999 8999999 9998644466
Q ss_pred CHHHHHHHHHHHHhhCCccccccC-CcCeEEEchhHHHHHHHHhcccce
Q 007817 463 LLEDLGNEFFCNPLSRSLFQQSSR-DVRKFVMHDLVHDLAQLVSGATSF 510 (588)
Q Consensus 463 ~~e~~~~~~l~~L~~rsllq~~~~-~~~~~~mHdlv~d~a~~~~~~e~~ 510 (588)
+.+++++ ||++|+++||+++... ...+|+|||+||++|++++.++++
T Consensus 426 ~~~~~~~-~l~~L~~rsLl~~~~~~~~~~~~mHdlv~~~a~~~~~~~~~ 473 (549)
T 2a5y_B 426 LDDEVAD-RLKRLSKRGALLSGKRMPVLTFKIDHIIHMFLKHVVDAQTI 473 (549)
T ss_dssp CTHHHHH-HHHHTTTBSSCSEEECSSSCEEECCHHHHHHHHTTSCTHHH
T ss_pred CHHHHHH-HHHHHHHcCCeeEecCCCceEEEeChHHHHHHHHHHHHHHH
Confidence 7888888 9999999999998754 346899999999999999988765
No 2
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=2.4e-41 Score=404.98 Aligned_cols=314 Identities=20% Similarity=0.280 Sum_probs=249.0
Q ss_pred CCCCCCceeechhhHHHHHHHHhcCCCCCCCCeEEEEEEccCCCcHHHHHHHHHccccc-ccccccEEEEEEeCCcc--c
Q 007817 164 RVPTERAVYGRDEDKARMLEMVLSDDPTTDANFCVIPIVGMAGAGKTMLAREVYNDRAV-QNFKFDVKAWVSVSDDF--D 240 (588)
Q Consensus 164 ~~~~~~~~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~-~~~~f~~~~wv~v~~~~--~ 240 (588)
.++.+..||||++++++|.++|.... +..++|+|+||||+||||||+++|++.+. ...+++.++||++++.. +
T Consensus 119 ~p~~~~~~vgR~~~~~~l~~~l~~~~----~~~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 194 (1249)
T 3sfz_A 119 VPQRPVIFVTRKKLVHAIQQKLWKLN----GEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGKQDKSG 194 (1249)
T ss_dssp CCCCCSSCCCCHHHHHHHHHHHHTTT----TSCEEEEEECSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEEECCSCCHHH
T ss_pred CCCCCceeccHHHHHHHHHHHHhhcc----CCCCEEEEEeCCCCCHHHHHHHHhcChhHHHhhCCCeEEEEEECCcCchH
Confidence 34456679999999999999997653 36789999999999999999999998643 33256788899998853 3
Q ss_pred HHHHHHHHHHHhcCCCC----CCCCHHHHHHHHHHHhcCC--ceeEEeccccccChhHHHHhhcccCCCCCCcEEEEeec
Q 007817 241 VLRISRALLESITSTNC----DFKTLNEVQVKLRIIVDGK--KFLLVLDDVWNENYNLWEILKAPFMAGARNSKIIVTTC 314 (588)
Q Consensus 241 ~~~~~~~il~~l~~~~~----~~~~~~~l~~~l~~~l~~k--~~LLVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTTR 314 (588)
....+..++..+..... ...+.+.+...++..+.++ |+||||||||+. ..|.. ..+||+||||||
T Consensus 195 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LlvlDd~~~~--~~~~~-------~~~~~~ilvTtR 265 (1249)
T 3sfz_A 195 LLMKLQNLCMRLDQEESFSQRLPLNIEEAKDRLRVLMLRKHPRSLLILDDVWDP--WVLKA-------FDNQCQILLTTR 265 (1249)
T ss_dssp HHHHHHHHHHHHTTTCTTCSSCCSSHHHHHHHHHHHTSSSSCSCEEEEESCCCH--HHHTT-------TCSSCEEEEEES
T ss_pred HHHHHHHHHHHhhhhcccccCCCCCHHHHHHHHHHHHhccCCCEEEEEecCCCH--HHHHh-------hcCCCEEEEEcC
Confidence 45557777777765432 2456788889999999877 999999999864 33332 257899999999
Q ss_pred chhhhhh-ccccceeeCCC-CCHHHHHHHHHHhhcCCCCCCCChhHHHHHHHHHHHhCCCchHHHHhhhhccCCCCHHHH
Q 007817 315 HSNVASM-MGSVEHYNLKL-LSDEYCWSVFVKHAFERRDAGAHQFSKLFRKKIVAKCGGLPLAVSTLGGLLRTRHTEDAW 392 (588)
Q Consensus 315 ~~~v~~~-~~~~~~~~l~~-L~~~ea~~Lf~~~a~~~~~~~~~~~~~~i~~~I~~~c~GlPLai~~~~~~L~~~~~~~~w 392 (588)
++.++.. .+....+++.+ |++++|++||...++.. .+...+++++|+++|+|+||||+++|+.|+.++ ..|
T Consensus 266 ~~~~~~~~~~~~~~~~~~~~l~~~~a~~l~~~~~~~~-----~~~~~~~~~~i~~~~~glPLal~~~~~~l~~~~--~~~ 338 (1249)
T 3sfz_A 266 DKSVTDSVMGPKHVVPVESGLGREKGLEILSLFVNMK-----KEDLPAEAHSIIKECKGSPLVVSLIGALLRDFP--NRW 338 (1249)
T ss_dssp STTTTTTCCSCBCCEECCSSCCHHHHHHHHHHHHTSC-----STTCCTHHHHHHHHTTTCHHHHHHHHHHHHHSS--SCH
T ss_pred CHHHHHhhcCCceEEEecCCCCHHHHHHHHHHhhCCC-----hhhCcHHHHHHHHHhCCCHHHHHHHHHHhhcCh--hHH
Confidence 9999854 45667899996 99999999999988432 223345588999999999999999999998764 246
Q ss_pred HHHHhcc---cCC-CCC-----cccHHHHHHHHhccCchhHHHHHhHhcccCCCceeehhHHHHHHHHcCCcccCCCCCC
Q 007817 393 EEIVSSK---MWD-LPQ-----QTDILAVLRLSYHYLPSHLKRCFTYCAIFPKNYEFEKNELVFLWMGEGMIQQSRTGKL 463 (588)
Q Consensus 393 ~~~~~~~---~~~-~~~-----~~~i~~~l~~sy~~L~~~~k~cf~~ls~Fp~~~~i~~~~Li~~W~aeg~i~~~~~~~~ 463 (588)
...+... .+. +.. .+.+..+|.+||+.||+++|.||+|||+||+++.|+++.++.+|.++
T Consensus 339 ~~~l~~l~~~~~~~~~~~~~~~~~~~~~~l~~s~~~L~~~~~~~~~~l~~f~~~~~i~~~~~~~~~~~~----------- 407 (1249)
T 3sfz_A 339 AYYLRQLQNKQFKRIRKSSSYDYEALDEAMSISVEMLREDIKDYYTDLSILQKDVKVPTKVLCVLWDLE----------- 407 (1249)
T ss_dssp HHHHHHHHSCCCCCSSCTTCTTHHHHHHHHHHHHHTSCTTTHHHHHHGGGSCTTCCEEHHHHHHHHTCC-----------
T ss_pred HHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhCCHHHHHHHHHhCccCCCCeeCHHHHHHHhCCC-----------
Confidence 5554432 211 111 24699999999999999999999999999999999999999999554
Q ss_pred HHHHHHHHHHHHhhCCccccccCC-cCeEEEchhHHHHHHHHhcccc
Q 007817 464 LEDLGNEFFCNPLSRSLFQQSSRD-VRKFVMHDLVHDLAQLVSGATS 509 (588)
Q Consensus 464 ~e~~~~~~l~~L~~rsllq~~~~~-~~~~~mHdlv~d~a~~~~~~e~ 509 (588)
++.++.+|++|+++||++....+ ..+|+|||+||++|+..+.++.
T Consensus 408 -~~~~~~~l~~L~~~sl~~~~~~~~~~~~~~h~l~~~~~~~~~~~~~ 453 (1249)
T 3sfz_A 408 -TEEVEDILQEFVNKSLLFCNRNGKSFCYYLHDLQVDFLTEKNRSQL 453 (1249)
T ss_dssp -HHHHHHHHHHHHHTTSCEEEESSSSEEEECCHHHHHHHHHHTGGGH
T ss_pred -HHHHHHHHHHHHhccceEEecCCCceEEEecHHHHHHHHhhhhHHH
Confidence 35688999999999999976532 3469999999999999987653
No 3
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=100.00 E-value=2.3e-41 Score=374.87 Aligned_cols=286 Identities=18% Similarity=0.246 Sum_probs=229.8
Q ss_pred ceeechhhHHHHHHHHhcCCCCCCCCeEEEEEEccCCCcHHHHHHHHHcccccccccccE-EEEEEeCCcccHHHHHHHH
Q 007817 170 AVYGRDEDKARMLEMVLSDDPTTDANFCVIPIVGMAGAGKTMLAREVYNDRAVQNFKFDV-KAWVSVSDDFDVLRISRAL 248 (588)
Q Consensus 170 ~~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~-~~wv~v~~~~~~~~~~~~i 248 (588)
..|||+.++++|.++|...+ ..++|+|+||||+||||||+++|++.+++. +|+. ++|+++++.++...++..|
T Consensus 129 ~~VGRe~eLeeL~elL~~~d-----~~RVV~IvGmGGIGKTTLAk~Vy~d~rV~~-~Fd~gV~WVsVs~~~d~~~IL~~L 202 (1221)
T 1vt4_I 129 YNVSRLQPYLKLRQALLELR-----PAKNVLIDGVLGSGKTWVALDVCLSYKVQC-KMDFKIFWLNLKNCNSPETVLEML 202 (1221)
T ss_dssp SCCCCHHHHHHHHHHHHHCC-----SSCEEEECCSTTSSHHHHHHHHHHHCHHHH-HHSSCEEEEECCCSSSHHHHHHHH
T ss_pred CCCCcHHHHHHHHHHHhccC-----CCeEEEEEcCCCccHHHHHHHHHHhhHHHH-hCCCcEEEEEeCCCCCHHHHHHHH
Confidence 35999999999999998642 368999999999999999999999877777 8886 9999999999888888887
Q ss_pred HHHhcCCC---C---C-----CCCHHHHHHHHHHHh---cCCceeEEeccccccChhHHHHhhcccCCCCCCcEEEEeec
Q 007817 249 LESITSTN---C---D-----FKTLNEVQVKLRIIV---DGKKFLLVLDDVWNENYNLWEILKAPFMAGARNSKIIVTTC 314 (588)
Q Consensus 249 l~~l~~~~---~---~-----~~~~~~l~~~l~~~l---~~k~~LLVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTTR 314 (588)
+..+.... . + ..+.+.+...++..| .++|+||||||||+. ..|+.+. +||+||||||
T Consensus 203 l~lL~~i~~~~~~~~d~~~~ip~~leeL~e~Lr~lL~~l~~KRvLLVLDDVwd~--eqLe~f~-------pGSRILVTTR 273 (1221)
T 1vt4_I 203 QKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNA--KAWNAFN-------LSCKILLTTR 273 (1221)
T ss_dssp HHHHHHHCSSSTTTSCCCSSHHHHHHHHHHHHHHHHHHSTTSSCEEEEESCCCH--HHHHHHH-------SSCCEEEECS
T ss_pred HHHHhhcCcccccccccccCCCCCHHHHHHHHHHHHHhhcCCCEEEEEeCcChH--HHHHhhC-------CCeEEEEecc
Confidence 77543211 1 0 112345566777766 689999999999983 5666542 6899999999
Q ss_pred chhhhhhccccceeeCC------CCCHHHHHHHHHHhhcCCCCCCCChhHHHHHHHHHHHhCCCchHHHHhhhhccCCC-
Q 007817 315 HSNVASMMGSVEHYNLK------LLSDEYCWSVFVKHAFERRDAGAHQFSKLFRKKIVAKCGGLPLAVSTLGGLLRTRH- 387 (588)
Q Consensus 315 ~~~v~~~~~~~~~~~l~------~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~i~~~I~~~c~GlPLai~~~~~~L~~~~- 387 (588)
++.++..+.....+.++ +|+.+||++||.+.. +.. . .++..+ .|+|+||||+++|+.|+.+.
T Consensus 274 d~~Va~~l~g~~vy~LeL~d~dL~LS~eEA~eLF~~~~-g~~----~---eeL~~e---ICgGLPLALkLaGs~Lr~k~~ 342 (1221)
T 1vt4_I 274 FKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYL-DCR----P---QDLPRE---VLTTNPRRLSIIAESIRDGLA 342 (1221)
T ss_dssp CSHHHHHHHHHSSCEEEECSSSSCCCHHHHHHHHHHHH-CCC----T---TTHHHH---HCCCCHHHHHHHHHHHHHSCS
T ss_pred ChHHHHhcCCCeEEEecCccccCCcCHHHHHHHHHHHc-CCC----H---HHHHHH---HhCCCHHHHHHHHHHHhCCCC
Confidence 99988655444456666 999999999999984 221 1 112223 39999999999999999874
Q ss_pred CHHHHHHHHhcccCCCCCcccHHHHHHHHhccCchhH-HHHHhHhcccCCCceeehhHHHHHHHHcCCcccCCCCCCHHH
Q 007817 388 TEDAWEEIVSSKMWDLPQQTDILAVLRLSYHYLPSHL-KRCFTYCAIFPKNYEFEKNELVFLWMGEGMIQQSRTGKLLED 466 (588)
Q Consensus 388 ~~~~w~~~~~~~~~~~~~~~~i~~~l~~sy~~L~~~~-k~cf~~ls~Fp~~~~i~~~~Li~~W~aeg~i~~~~~~~~~e~ 466 (588)
+.+.|... ....+..+|.+||+.||++. |.||++||+||+++.|+++.++.+|+++| ++
T Consensus 343 s~eeW~~~---------~~~~I~aaLelSYd~Lp~eelK~cFL~LAIFPed~~I~~elLa~LW~aeG-----------ee 402 (1221)
T 1vt4_I 343 TWDNWKHV---------NCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVI-----------KS 402 (1221)
T ss_dssp SHHHHHHC---------SCHHHHHHHHHHHHHSCTTHHHHHHHHTTSSCTTSCEEHHHHHHHHCSSC-----------SH
T ss_pred CHHHHhcC---------ChhHHHHHHHHHHHhCCHHHHHHHHHHHhCCCCCCCCCHHHHHHHhcCCC-----------HH
Confidence 67888753 23679999999999999999 99999999999999999999999998886 13
Q ss_pred HHHHHHHHHhhCCccccccCCcCeEEEchhHHHHHH
Q 007817 467 LGNEFFCNPLSRSLFQQSSRDVRKFVMHDLVHDLAQ 502 (588)
Q Consensus 467 ~~~~~l~~L~~rsllq~~~~~~~~~~mHdlv~d~a~ 502 (588)
.++.+|++|+++|||+... +...|+|||++++++.
T Consensus 403 dAe~~L~eLvdRSLLq~d~-~~~rYrMHDLllELr~ 437 (1221)
T 1vt4_I 403 DVMVVVNKLHKYSLVEKQP-KESTISIPSIYLELKV 437 (1221)
T ss_dssp HHHHHHHHHHTSSSSSBCS-SSSEEBCCCHHHHHHH
T ss_pred HHHHHHHHHHhhCCEEEeC-CCCEEEehHHHHHHhc
Confidence 4888999999999999853 4578999999999663
No 4
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=100.00 E-value=3.1e-37 Score=340.90 Aligned_cols=305 Identities=22% Similarity=0.310 Sum_probs=231.7
Q ss_pred CCCceeechhhHHHHHHHHhcCCCCCCCCeEEEEEEccCCCcHHHHHHHHHccccc-ccccc-cEEEEEEeCCccc--HH
Q 007817 167 TERAVYGRDEDKARMLEMVLSDDPTTDANFCVIPIVGMAGAGKTMLAREVYNDRAV-QNFKF-DVKAWVSVSDDFD--VL 242 (588)
Q Consensus 167 ~~~~~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~-~~~~f-~~~~wv~v~~~~~--~~ 242 (588)
.+..||||+.++++|.++|.... +..++|+|+||||+||||||.+++++... .. +| +.++|++++.... +.
T Consensus 122 ~~~~~vGR~~~l~~L~~~L~~~~----~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~-~f~~~v~wv~~~~~~~~~~~ 196 (591)
T 1z6t_A 122 RPVVFVTRKKLVNAIQQKLSKLK----GEPGWVTIHGMAGCGKSVLAAEAVRDHSLLEG-CFPGGVHWVSVGKQDKSGLL 196 (591)
T ss_dssp CCSSCCCCHHHHHHHHHHHTTST----TSCEEEEEECCTTSSHHHHHHHHHCCHHHHHH-HCTTCEEEEEEESCCHHHHH
T ss_pred CCCeecccHHHHHHHHHHHhccc----CCCceEEEEcCCCCCHHHHHHHHHhchhHHHh-hCCCceEEEECCCCchHHHH
Confidence 34679999999999999997542 35689999999999999999999998654 45 67 5899999986521 22
Q ss_pred HHHHHHHHHhcCC----CCCCCCHHHHHHHHHHHhcC--CceeEEeccccccChhHHHHhhcccCCCCCCcEEEEeecch
Q 007817 243 RISRALLESITST----NCDFKTLNEVQVKLRIIVDG--KKFLLVLDDVWNENYNLWEILKAPFMAGARNSKIIVTTCHS 316 (588)
Q Consensus 243 ~~~~~il~~l~~~----~~~~~~~~~l~~~l~~~l~~--k~~LLVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTTR~~ 316 (588)
..+..++..++.. .....+.+.+...+...+.+ +++||||||+|+. ..+. .+ .+|++||||||++
T Consensus 197 ~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LLVLDdv~~~--~~l~----~l---~~~~~ilvTsR~~ 267 (591)
T 1z6t_A 197 MKLQNLCTRLDQDESFSQRLPLNIEEAKDRLRILMLRKHPRSLLILDDVWDS--WVLK----AF---DSQCQILLTTRDK 267 (591)
T ss_dssp HHHHHHHHHHCSSCCSCSSCCCSHHHHHHHHHHHHHHTCTTCEEEEEEECCH--HHHH----TT---CSSCEEEEEESCG
T ss_pred HHHHHHHHHhccccccccCCCCCHHHHHHHHHHHHccCCCCeEEEEeCCCCH--HHHH----Hh---cCCCeEEEECCCc
Confidence 3333344455421 12345677778888888876 7999999999864 2232 22 4689999999999
Q ss_pred hhhhhccccceeeC---CCCCHHHHHHHHHHhhcCCCCCCCChhHHHHHHHHHHHhCCCchHHHHhhhhccCCCCHHHHH
Q 007817 317 NVASMMGSVEHYNL---KLLSDEYCWSVFVKHAFERRDAGAHQFSKLFRKKIVAKCGGLPLAVSTLGGLLRTRHTEDAWE 393 (588)
Q Consensus 317 ~v~~~~~~~~~~~l---~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~i~~~I~~~c~GlPLai~~~~~~L~~~~~~~~w~ 393 (588)
.++..+. ...+++ ++|+.+++++||...++.. .....+.+.+|+++|+|+||||..+|+.|+.+. ..|.
T Consensus 268 ~~~~~~~-~~~~~v~~l~~L~~~ea~~L~~~~~~~~-----~~~~~~~~~~i~~~~~G~PLal~~~a~~l~~~~--~~w~ 339 (591)
T 1z6t_A 268 SVTDSVM-GPKYVVPVESSLGKEKGLEILSLFVNMK-----KADLPEQAHSIIKECKGSPLVVSLIGALLRDFP--NRWE 339 (591)
T ss_dssp GGGTTCC-SCEEEEECCSSCCHHHHHHHHHHHHTSC-----GGGSCTHHHHHHHHHTTCHHHHHHHHHHHHHST--TCHH
T ss_pred HHHHhcC-CCceEeecCCCCCHHHHHHHHHHHhCCC-----cccccHHHHHHHHHhCCCcHHHHHHHHHHhcCc--hhHH
Confidence 8876643 233333 6899999999999988542 112234578899999999999999999998764 2576
Q ss_pred HHHhcccCC----CC-----CcccHHHHHHHHhccCchhHHHHHhHhcccCCCceeehhHHHHHHHHcCCcccCCCCCCH
Q 007817 394 EIVSSKMWD----LP-----QQTDILAVLRLSYHYLPSHLKRCFTYCAIFPKNYEFEKNELVFLWMGEGMIQQSRTGKLL 464 (588)
Q Consensus 394 ~~~~~~~~~----~~-----~~~~i~~~l~~sy~~L~~~~k~cf~~ls~Fp~~~~i~~~~Li~~W~aeg~i~~~~~~~~~ 464 (588)
..+...... +. ....+..+|..||+.||++.|.||++||+||+++.|+.+.+..+|.++
T Consensus 340 ~~l~~l~~~~~~~~~~~~~~~~~~l~~~l~~s~~~L~~~~~~~l~~la~f~~~~~i~~~~l~~l~~~~------------ 407 (591)
T 1z6t_A 340 YYLKQLQNKQFKRIRKSSSYDYEALDEAMSISVEMLREDIKDYYTDLSILQKDVKVPTKVLCILWDME------------ 407 (591)
T ss_dssp HHHHHHHSCCCCCSSCCCSSCCHHHHHHHHHHHHTSCTTTHHHHHHGGGCCTTCCEEHHHHHHHHTCC------------
T ss_pred HHHHHHHHhHHHHhhhccccchHHHHHHHHHHHHhCCHHHHHHHHHccccCCCCccCHHHHHHHhccC------------
Confidence 655432111 11 135799999999999999999999999999999999999999999543
Q ss_pred HHHHHHHHHHHhhCCccccccC-CcCeEEEchhHHHHHHHHh
Q 007817 465 EDLGNEFFCNPLSRSLFQQSSR-DVRKFVMHDLVHDLAQLVS 505 (588)
Q Consensus 465 e~~~~~~l~~L~~rsllq~~~~-~~~~~~mHdlv~d~a~~~~ 505 (588)
.+.+..++++|+++|||+.... ....|+||+++|++++...
T Consensus 408 ~~~~~~~l~~L~~~~Ll~~~~~~~~~~~~~H~lv~~~~~~~~ 449 (591)
T 1z6t_A 408 TEEVEDILQEFVNKSLLFCDRNGKSFRYYLHDLQVDFLTEKN 449 (591)
T ss_dssp HHHHHHHHHHHHHTTSSEEEEETTEEEEECCHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhCcCeEEecCCCccEEEEcHHHHHHHHhhh
Confidence 2347889999999999986542 2357999999999999874
No 5
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=99.76 E-value=5e-17 Score=166.71 Aligned_cols=291 Identities=13% Similarity=0.119 Sum_probs=181.5
Q ss_pred CCCceeechhhHHHHHHHHhcCCCCCCCCeEEEEEEccCCCcHHHHHHHHHcccccccccccEEEEEEeCCcc------c
Q 007817 167 TERAVYGRDEDKARMLEMVLSDDPTTDANFCVIPIVGMAGAGKTMLAREVYNDRAVQNFKFDVKAWVSVSDDF------D 240 (588)
Q Consensus 167 ~~~~~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~wv~v~~~~------~ 240 (588)
.+..|+||+.++++|.+++... +++.|+|++|+|||||++++++.. . .+|+++.... +
T Consensus 10 ~~~~~~gR~~el~~L~~~l~~~--------~~v~i~G~~G~GKT~Ll~~~~~~~-------~-~~~~~~~~~~~~~~~~~ 73 (350)
T 2qen_A 10 RREDIFDREEESRKLEESLENY--------PLTLLLGIRRVGKSSLLRAFLNER-------P-GILIDCRELYAERGHIT 73 (350)
T ss_dssp SGGGSCSCHHHHHHHHHHHHHC--------SEEEEECCTTSSHHHHHHHHHHHS-------S-EEEEEHHHHHHTTTCBC
T ss_pred ChHhcCChHHHHHHHHHHHhcC--------CeEEEECCCcCCHHHHHHHHHHHc-------C-cEEEEeecccccccCCC
Confidence 4467999999999999998642 589999999999999999998742 2 6777775432 4
Q ss_pred HHHHHHHHHHHhcC-----------------CCC-CCCCHHHHHHHHHHHhcC-CceeEEeccccccCh-------hHHH
Q 007817 241 VLRISRALLESITS-----------------TNC-DFKTLNEVQVKLRIIVDG-KKFLLVLDDVWNENY-------NLWE 294 (588)
Q Consensus 241 ~~~~~~~il~~l~~-----------------~~~-~~~~~~~l~~~l~~~l~~-k~~LLVlDdv~~~~~-------~~~~ 294 (588)
...++..+...+.. ... ...+..++...+...... ++++|||||+++.+. ..+.
T Consensus 74 ~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vlvlDe~~~~~~~~~~~~~~~~~ 153 (350)
T 2qen_A 74 REELIKELQSTISPFQKFQSKFKISLNLKFLTLEPRKLSLREVFRELNDLGEELGEFIVAFDEAQYLRFYGSRGGKELLA 153 (350)
T ss_dssp HHHHHHHHHHHSCSHHHHHHHHTCCCCCGGGTSCGGGCCHHHHHHHHHHHHHHHSCEEEEEETGGGGGGBTTTTTHHHHH
T ss_pred HHHHHHHHHHHHHHHHhHhhhceeEEEecceeeccccchHHHHHHHHHHHHhccCCEEEEEeCHHHHhccCccchhhHHH
Confidence 55666666665432 000 124556666666665543 399999999977432 2334
Q ss_pred HhhcccCCCCCCcEEEEeecchhhhhh----------c-c-ccceeeCCCCCHHHHHHHHHHhhcCCCCCCCChhHHHHH
Q 007817 295 ILKAPFMAGARNSKIIVTTCHSNVASM----------M-G-SVEHYNLKLLSDEYCWSVFVKHAFERRDAGAHQFSKLFR 362 (588)
Q Consensus 295 ~l~~~l~~~~~gs~ilvTTR~~~v~~~----------~-~-~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~i~ 362 (588)
.+...... .++.++|+|++....... . + ....+++.+|+.+|+.+++.......+. ... .+.+
T Consensus 154 ~L~~~~~~-~~~~~~il~g~~~~~l~~~l~~~~~~~~l~~~~~~~i~l~pl~~~e~~~~l~~~~~~~~~-~~~---~~~~ 228 (350)
T 2qen_A 154 LFAYAYDS-LPNLKIILTGSEVGLLHDFLKITDYESPLYGRIAGEVLVKPFDKDTSVEFLKRGFREVNL-DVP---ENEI 228 (350)
T ss_dssp HHHHHHHH-CTTEEEEEEESSHHHHHHHHCTTCTTSTTTTCCCEEEECCCCCHHHHHHHHHHHHHTTTC-CCC---HHHH
T ss_pred HHHHHHHh-cCCeEEEEECCcHHHHHHHHhhcCCCCccccCccceeeCCCCCHHHHHHHHHHHHHHcCC-CCC---HHHH
Confidence 44332222 247889999887543111 1 1 1247999999999999999875422111 111 2346
Q ss_pred HHHHHHhCCCchHHHHhhhhccCCCCHHHHH-HHHhcccCCCCCcccHHHHHHHHhccC---chhHHHHHhHhcccCCCc
Q 007817 363 KKIVAKCGGLPLAVSTLGGLLRTRHTEDAWE-EIVSSKMWDLPQQTDILAVLRLSYHYL---PSHLKRCFTYCAIFPKNY 438 (588)
Q Consensus 363 ~~I~~~c~GlPLai~~~~~~L~~~~~~~~w~-~~~~~~~~~~~~~~~i~~~l~~sy~~L---~~~~k~cf~~ls~Fp~~~ 438 (588)
..|++.|+|+|+++..++..+........+. .+. +.+...+.-.+..+ ++..+..+..+|. ..
T Consensus 229 ~~i~~~tgG~P~~l~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~l~~l~~~~~~~~~~l~~la~--g~- 295 (350)
T 2qen_A 229 EEAVELLDGIPGWLVVFGVEYLRNGDFGRAMKRTL----------EVAKGLIMGELEELRRRSPRYVDILRAIAL--GY- 295 (350)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCCHHHHHHHHH----------HHHHHHHHHHHHHHHHHCHHHHHHHHHHHT--TC-
T ss_pred HHHHHHhCCCHHHHHHHHHHHhccccHhHHHHHHH----------HHHHHHHHHHHHHHHhCChhHHHHHHHHHh--CC-
Confidence 7899999999999999987643211222221 111 11112222222333 7889999999998 22
Q ss_pred eeehhHHHHHHHHcCCcccCCCCCCHHHHHHHHHHHHhhCCccccccCCcCeEEE-chhHHHHHH
Q 007817 439 EFEKNELVFLWMGEGMIQQSRTGKLLEDLGNEFFCNPLSRSLFQQSSRDVRKFVM-HDLVHDLAQ 502 (588)
Q Consensus 439 ~i~~~~Li~~W~aeg~i~~~~~~~~~e~~~~~~l~~L~~rsllq~~~~~~~~~~m-Hdlv~d~a~ 502 (588)
++...+.....+.. ++.+ ......+++.|++.+++.... ..|.+ |++++++.+
T Consensus 296 -~~~~~l~~~~~~~~------~~~~-~~~~~~~l~~L~~~gli~~~~---~~y~~~~p~~~~~~~ 349 (350)
T 2qen_A 296 -NRWSLIRDYLAVKG------TKIP-EPRLYALLENLKKMNWIVEED---NTYKIADPVVATVLR 349 (350)
T ss_dssp -CSHHHHHHHHHHTT------CCCC-HHHHHHHHHHHHHTTSEEEET---TEEEESSHHHHHHHT
T ss_pred -CCHHHHHHHHHHHh------CCCC-HHHHHHHHHHHHhCCCEEecC---CEEEEecHHHHHHHc
Confidence 34455544332210 0111 344678999999999998753 34554 778887653
No 6
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=99.74 E-value=3.4e-17 Score=172.12 Aligned_cols=316 Identities=11% Similarity=-0.025 Sum_probs=188.5
Q ss_pred CCceeechhhHHHHHHHH-hcCCCCCCCCeEEEEE--EccCCCcHHHHHHHHHccccccc--cccc-EEEEEEeCCcccH
Q 007817 168 ERAVYGRDEDKARMLEMV-LSDDPTTDANFCVIPI--VGMAGAGKTMLAREVYNDRAVQN--FKFD-VKAWVSVSDDFDV 241 (588)
Q Consensus 168 ~~~~vGR~~e~~~l~~~L-~~~~~~~~~~~~vv~I--~G~gGiGKTtLA~~v~~~~~~~~--~~f~-~~~wv~v~~~~~~ 241 (588)
+..++||+.++++|.+++ .............+.| +|++|+||||||+.+++...... ..+. .++|+++....+.
T Consensus 21 p~~l~gR~~el~~l~~~l~~~~~~~~~~~~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (412)
T 1w5s_A 21 PPELRVRRGEAEALARIYLNRLLSGAGLSDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVNAFNAPNL 100 (412)
T ss_dssp CSSCSSSCHHHHHHHHHHHHHHHTSSCBCCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGCCSH
T ss_pred CCCCCChHHHHHHHHHHHhHHHhcCCCCCCCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEEEECCCCCCH
Confidence 367999999999999998 4321100013356666 99999999999999998654310 0122 3678887777788
Q ss_pred HHHHHHHHHHhcCCCCC-CCCHHHHHHHHHHHhc--CCceeEEeccccccC------hhHHHHhhcccCCC---C--CCc
Q 007817 242 LRISRALLESITSTNCD-FKTLNEVQVKLRIIVD--GKKFLLVLDDVWNEN------YNLWEILKAPFMAG---A--RNS 307 (588)
Q Consensus 242 ~~~~~~il~~l~~~~~~-~~~~~~l~~~l~~~l~--~k~~LLVlDdv~~~~------~~~~~~l~~~l~~~---~--~gs 307 (588)
..++..++.+++...+. ..+...+...+...+. +++++|||||+|... ...+..+...+... . .+.
T Consensus 101 ~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~llvlDe~~~l~~~~~~~~~~l~~l~~~~~~~~~~~~~~~v 180 (412)
T 1w5s_A 101 YTILSLIVRQTGYPIQVRGAPALDILKALVDNLYVENHYLLVILDEFQSMLSSPRIAAEDLYTLLRVHEEIPSRDGVNRI 180 (412)
T ss_dssp HHHHHHHHHHHTCCCCCTTCCHHHHHHHHHHHHHHHTCEEEEEEESTHHHHSCTTSCHHHHHHHHTHHHHSCCTTSCCBE
T ss_pred HHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEEeCHHHHhhccCcchHHHHHHHHHHHhcccCCCCceE
Confidence 89999999998764332 2345566666666664 779999999997632 23444443333221 2 345
Q ss_pred EEEEeecchhhhhhc--------c-ccceeeCCCCCHHHHHHHHHHhhcCCCCCCCChhHHHHHHHHHHHhC------CC
Q 007817 308 KIIVTTCHSNVASMM--------G-SVEHYNLKLLSDEYCWSVFVKHAFERRDAGAHQFSKLFRKKIVAKCG------GL 372 (588)
Q Consensus 308 ~ilvTTR~~~v~~~~--------~-~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~i~~~I~~~c~------Gl 372 (588)
.+|+||+...+...+ . ....+.+.+|+.++++++|...+...... .....+....|++.|+ |+
T Consensus 181 ~lI~~~~~~~~~~~l~~~~~~~~~~~~~~i~l~~l~~~e~~~ll~~~~~~~~~~--~~~~~~~~~~i~~~~~~~~~~~G~ 258 (412)
T 1w5s_A 181 GFLLVASDVRALSYMREKIPQVESQIGFKLHLPAYKSRELYTILEQRAELGLRD--TVWEPRHLELISDVYGEDKGGDGS 258 (412)
T ss_dssp EEEEEEEETHHHHHHHHHCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHHBCT--TSCCHHHHHHHHHHHCGGGTSCCC
T ss_pred EEEEEeccccHHHHHhhhcchhhhhcCCeeeeCCCCHHHHHHHHHHHHHhcCCC--CCCChHHHHHHHHHHHHhccCCCc
Confidence 588888766533211 1 11239999999999999997654211110 1112344667999999 99
Q ss_pred chHHHHhhhhcc------C--CCCHHHHHHHHhcccCCCCCcccHHHHHHHHhccCchhHHHHHhHhcccC--CCceeeh
Q 007817 373 PLAVSTLGGLLR------T--RHTEDAWEEIVSSKMWDLPQQTDILAVLRLSYHYLPSHLKRCFTYCAIFP--KNYEFEK 442 (588)
Q Consensus 373 PLai~~~~~~L~------~--~~~~~~w~~~~~~~~~~~~~~~~i~~~l~~sy~~L~~~~k~cf~~ls~Fp--~~~~i~~ 442 (588)
|..+..+..... . .-+.+.+......... ...+..++..||++.+.++..++.+. .+..++.
T Consensus 259 p~~~~~l~~~a~~~a~~~~~~~i~~~~v~~~~~~~~~--------~~~~~~~l~~l~~~~~~~l~aia~l~~~~~~~~~~ 330 (412)
T 1w5s_A 259 ARRAIVALKMACEMAEAMGRDSLSEDLVRKAVSENEA--------ASIQTHELEALSIHELIILRLIAEATLGGMEWINA 330 (412)
T ss_dssp HHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHC--------------CCSSSSSCHHHHHHHHHHHHHHHTTCSSBCH
T ss_pred HHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhc--------cchHHHHHHcCCHHHHHHHHHHHHHHhcCCCCccH
Confidence 976655543211 1 1133434333321100 12334456889999999999998753 2334555
Q ss_pred hHHHHHHH--H-cCCcccCCCCCCHHHHHHHHHHHHhhCCccccccC---CcCeEEEchhH
Q 007817 443 NELVFLWM--G-EGMIQQSRTGKLLEDLGNEFFCNPLSRSLFQQSSR---DVRKFVMHDLV 497 (588)
Q Consensus 443 ~~Li~~W~--a-eg~i~~~~~~~~~e~~~~~~l~~L~~rsllq~~~~---~~~~~~mHdlv 497 (588)
..+...+. + .-. ............+++.|+..+++..... ....|++|.+.
T Consensus 331 ~~~~~~~~~~~~~~~----~~~~~~~~~~~~~l~~L~~~gli~~~~~~~~~~g~~~~~~l~ 387 (412)
T 1w5s_A 331 GLLRQRYEDASLTMY----NVKPRGYTQYHIYLKHLTSLGLVDAKPSGRGMRGRTTLFRLA 387 (412)
T ss_dssp HHHHHHHHHHHHHHS----CCCCCCHHHHHHHHHHHHHTTSEEEECC-------CCEEEEC
T ss_pred HHHHHHHHHHHHhhc----CCCCCCHHHHHHHHHHHHhCCCEEeecccCCCCCceeEEEeC
Confidence 55555442 2 111 0011123446688999999999976532 22345555554
No 7
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=99.72 E-value=3.1e-16 Score=161.17 Aligned_cols=290 Identities=12% Similarity=0.123 Sum_probs=173.7
Q ss_pred CCCceeechhhHHHHHHHHhcCCCCCCCCeEEEEEEccCCCcHHHHHHHHHcccccccccccEEEEEEeCCc-----ccH
Q 007817 167 TERAVYGRDEDKARMLEMVLSDDPTTDANFCVIPIVGMAGAGKTMLAREVYNDRAVQNFKFDVKAWVSVSDD-----FDV 241 (588)
Q Consensus 167 ~~~~~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~wv~v~~~-----~~~ 241 (588)
.+..|+||+++++.|.+ +.. +++.|+|++|+|||+|++.+++... . ..+|+++... .+.
T Consensus 11 ~~~~~~gR~~el~~L~~-l~~---------~~v~i~G~~G~GKT~L~~~~~~~~~-----~-~~~~~~~~~~~~~~~~~~ 74 (357)
T 2fna_A 11 NRKDFFDREKEIEKLKG-LRA---------PITLVLGLRRTGKSSIIKIGINELN-----L-PYIYLDLRKFEERNYISY 74 (357)
T ss_dssp SGGGSCCCHHHHHHHHH-TCS---------SEEEEEESTTSSHHHHHHHHHHHHT-----C-CEEEEEGGGGTTCSCCCH
T ss_pred CHHHhcChHHHHHHHHH-hcC---------CcEEEECCCCCCHHHHHHHHHHhcC-----C-CEEEEEchhhccccCCCH
Confidence 34679999999999999 632 4899999999999999999998642 1 2578887642 233
Q ss_pred HHHHHHHHHHhc-------------CCC-----C-----------CCCCHHHHHHHHHHHhcCCceeEEeccccccCh--
Q 007817 242 LRISRALLESIT-------------STN-----C-----------DFKTLNEVQVKLRIIVDGKKFLLVLDDVWNENY-- 290 (588)
Q Consensus 242 ~~~~~~il~~l~-------------~~~-----~-----------~~~~~~~l~~~l~~~l~~k~~LLVlDdv~~~~~-- 290 (588)
..++..+...+. ... + .......+...+.+... ++++|||||+++.+.
T Consensus 75 ~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~-~~~vlvlDe~~~~~~~~ 153 (357)
T 2fna_A 75 KDFLLELQKEINKLVKRLPSLLKALKNIQGIVIMGNEIKFNWNRKDRLSFANLLESFEQASK-DNVIIVLDEAQELVKLR 153 (357)
T ss_dssp HHHHHHHHHHHHHHHHHCTTHHHHTTTSTTEEECSSSEEEC-----CCCHHHHHHHHHHTCS-SCEEEEEETGGGGGGCT
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHhcccceEEecceEEEeccCCcchhhHHHHHHHHHhcCC-CCeEEEEECHHHhhccC
Confidence 444444443321 000 0 12344555555554333 499999999976432
Q ss_pred --hHHHHhhcccCCCCCCcEEEEeecchhhhhh----------c-cc-cceeeCCCCCHHHHHHHHHHhhcCCCCCCCCh
Q 007817 291 --NLWEILKAPFMAGARNSKIIVTTCHSNVASM----------M-GS-VEHYNLKLLSDEYCWSVFVKHAFERRDAGAHQ 356 (588)
Q Consensus 291 --~~~~~l~~~l~~~~~gs~ilvTTR~~~v~~~----------~-~~-~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~ 356 (588)
..+..+.. +.....+.++|+|++....... . +. ...+++.+|+.+++.+++.......+. ....
T Consensus 154 ~~~~~~~l~~-~~~~~~~~~~i~~g~~~~~l~~~l~~~~~~~~l~~r~~~~i~l~~l~~~e~~~~l~~~~~~~~~-~~~~ 231 (357)
T 2fna_A 154 GVNLLPALAY-AYDNLKRIKFIMSGSEMGLLYDYLRVEDPESPLFGRAFSTVELKPFSREEAIEFLRRGFQEADI-DFKD 231 (357)
T ss_dssp TCCCHHHHHH-HHHHCTTEEEEEEESSHHHHHHHTTTTCTTSTTTTCCCEEEEECCCCHHHHHHHHHHHHHHHTC-CCCC
T ss_pred chhHHHHHHH-HHHcCCCeEEEEEcCchHHHHHHHhccCCCCccccCccceeecCCCCHHHHHHHHHHHHHHcCC-CCCc
Confidence 22233322 2222246789999987643211 1 11 257899999999999999875421111 1111
Q ss_pred hHHHHHHHHHHHhCCCchHHHHhhhhccCCCCHHHHHH-HHhcccCCCCCcccHHHHHH-HHh--ccCchhHHHHHhHhc
Q 007817 357 FSKLFRKKIVAKCGGLPLAVSTLGGLLRTRHTEDAWEE-IVSSKMWDLPQQTDILAVLR-LSY--HYLPSHLKRCFTYCA 432 (588)
Q Consensus 357 ~~~~i~~~I~~~c~GlPLai~~~~~~L~~~~~~~~w~~-~~~~~~~~~~~~~~i~~~l~-~sy--~~L~~~~k~cf~~ls 432 (588)
. ..|++.|+|+|+++..++..+........|.. +.+.. ...+..-+. +.+ ..||+..+..+..+|
T Consensus 232 -~----~~i~~~t~G~P~~l~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~l~~~~~~~~~l~~~~~~~l~~la 300 (357)
T 2fna_A 232 -Y----EVVYEKIGGIPGWLTYFGFIYLDNKNLDFAINQTLEYA------KKLILKEFENFLHGREIARKRYLNIMRTLS 300 (357)
T ss_dssp -H----HHHHHHHCSCHHHHHHHHHHHHHHCCHHHHHHHHHHHH------HHHHHHHHHHHHTTCGGGHHHHHHHHHHHT
T ss_pred -H----HHHHHHhCCCHHHHHHHHHHHccccchHHHHHHHHHHH------HHHHHHHHHHHhhccccccHHHHHHHHHHH
Confidence 1 57999999999999999877643323333321 11100 001111222 111 168899999999999
Q ss_pred ccCCCceeehhHHHHHHH-HcCCcccCCCCCCHHHHHHHHHHHHhhCCccccccCCcCeEE-EchhHHHHH
Q 007817 433 IFPKNYEFEKNELVFLWM-GEGMIQQSRTGKLLEDLGNEFFCNPLSRSLFQQSSRDVRKFV-MHDLVHDLA 501 (588)
Q Consensus 433 ~Fp~~~~i~~~~Li~~W~-aeg~i~~~~~~~~~e~~~~~~l~~L~~rsllq~~~~~~~~~~-mHdlv~d~a 501 (588)
+ +. +...+....- ..|. .........+++.|++.+++.... ..|. -|++++++.
T Consensus 301 ~---g~--~~~~l~~~~~~~~g~-------~~~~~~~~~~L~~L~~~gli~~~~---~~y~f~~~~~~~~l 356 (357)
T 2fna_A 301 K---CG--KWSDVKRALELEEGI-------EISDSEIYNYLTQLTKHSWIIKEG---EKYCPSEPLISLAF 356 (357)
T ss_dssp T---CB--CHHHHHHHHHHHHCS-------CCCHHHHHHHHHHHHHTTSEEESS---SCEEESSHHHHHHT
T ss_pred c---CC--CHHHHHHHHHHhcCC-------CCCHHHHHHHHHHHHhCCCEEecC---CEEEecCHHHHHhh
Confidence 8 21 3444432211 1121 011234678999999999998653 3455 578888764
No 8
>3qfl_A MLA10; coiled-coil, (CC) domain, NLRS, nucleotide-binding domain, L rich repeat containing receptors, protein binding; 2.00A {Hordeum vulgare}
Probab=99.63 E-value=7.8e-16 Score=129.88 Aligned_cols=79 Identities=22% Similarity=0.336 Sum_probs=69.9
Q ss_pred HHHHHHHHhhHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHhh--ccCcHHHHHHHHHHHHHhhchHhHHHHHHH
Q 007817 12 FQVLFDRLASRDLLNFVRQLQGGLDSELKKWENTLIMIQAVLCDAEEK--QLTNKAVKIWLDDLRDLAYDAEDILDEFAT 89 (588)
Q Consensus 12 ~~~l~~~l~~~~~~~~~~~~~v~~~~~~~~L~~~l~~i~~~l~~a~~~--~~~~~~v~~Wl~~lrd~ayd~eD~lD~~~~ 89 (588)
++.+++||.+....++....|| ++++++|+++|++|++||.+|+.+ +..++.++.|++|||++|||+|||||+|.+
T Consensus 3 v~~ll~KL~~ll~~E~~l~~gv--~~~i~~Lk~eL~~m~a~L~da~~~~~~~~d~~vk~W~~~vrdlaYD~ED~iD~f~~ 80 (115)
T 3qfl_A 3 ISNLIPKLGELLTEEFKLHKGV--KKNIEDLGKELESMNAALIKIGEVPREQLDSQDKLWADEVRELSYVIEDVVDKFLV 80 (115)
T ss_dssp TCSHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhch--HHHHHHHHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456666777766788888888 999999999999999999999998 567999999999999999999999999999
Q ss_pred HHH
Q 007817 90 EAL 92 (588)
Q Consensus 90 ~~~ 92 (588)
+..
T Consensus 81 ~~~ 83 (115)
T 3qfl_A 81 QVD 83 (115)
T ss_dssp HHH
T ss_pred Hhc
Confidence 874
No 9
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=99.55 E-value=8.8e-13 Score=137.12 Aligned_cols=298 Identities=9% Similarity=0.009 Sum_probs=189.3
Q ss_pred CceeechhhHHHHHHHHhcCCCCCCCCeEEEEEEccCCCcHHHHHHHHHcccccccccccEEEEEEeCCcccHHHHHHHH
Q 007817 169 RAVYGRDEDKARMLEMVLSDDPTTDANFCVIPIVGMAGAGKTMLAREVYNDRAVQNFKFDVKAWVSVSDDFDVLRISRAL 248 (588)
Q Consensus 169 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i 248 (588)
..++||+.+++++.+++........+..+.+.|+|++|+|||||++.+++...... -...+|++++...+...++..+
T Consensus 17 ~~l~gr~~~~~~l~~~l~~~~~~~~~~~~~~li~G~~G~GKTtl~~~l~~~~~~~~--~~~~~~i~~~~~~~~~~~~~~l 94 (389)
T 1fnn_A 17 KRLPHREQQLQQLDILLGNWLRNPGHHYPRATLLGRPGTGKTVTLRKLWELYKDKT--TARFVYINGFIYRNFTAIIGEI 94 (389)
T ss_dssp SCCTTCHHHHHHHHHHHHHHHHSTTSSCCEEEEECCTTSSHHHHHHHHHHHHTTSC--CCEEEEEETTTCCSHHHHHHHH
T ss_pred CCCCChHHHHHHHHHHHHHHHcCCCCCCCeEEEECCCCCCHHHHHHHHHHHHhhhc--CeeEEEEeCccCCCHHHHHHHH
Confidence 67999999999999998752110112334899999999999999999998654321 1356788888877888899999
Q ss_pred HHHhcCCCCC-CCCHHHHHHHHHHHhc--CCceeEEeccccccChhHHHHhhcccCCCC----CCcEEEEeecchhhhhh
Q 007817 249 LESITSTNCD-FKTLNEVQVKLRIIVD--GKKFLLVLDDVWNENYNLWEILKAPFMAGA----RNSKIIVTTCHSNVASM 321 (588)
Q Consensus 249 l~~l~~~~~~-~~~~~~l~~~l~~~l~--~k~~LLVlDdv~~~~~~~~~~l~~~l~~~~----~gs~ilvTTR~~~v~~~ 321 (588)
+..++...+. ..+...+...+...+. +++.+||||+++..+......+...+.... .+..+|++|+.......
T Consensus 95 ~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~~~~~~ 174 (389)
T 1fnn_A 95 ARSLNIPFPRRGLSRDEFLALLVEHLRERDLYMFLVLDDAFNLAPDILSTFIRLGQEADKLGAFRIALVIVGHNDAVLNN 174 (389)
T ss_dssp HHHTTCCCCSSCCCHHHHHHHHHHHHHHTTCCEEEEEETGGGSCHHHHHHHHHHTTCHHHHSSCCEEEEEEESSTHHHHT
T ss_pred HHHhCccCCCCCCCHHHHHHHHHHHHhhcCCeEEEEEECccccchHHHHHHHHHHHhCCCCCcCCEEEEEEECCchHHHH
Confidence 9988654332 2345566666666554 668899999998776666666655553311 46778888876644332
Q ss_pred cc-------ccceeeCCCCCHHHHHHHHHHhhcCCCCCCCChhHHHHHHHHHHHh---------CCCchHHHHhhhhcc-
Q 007817 322 MG-------SVEHYNLKLLSDEYCWSVFVKHAFERRDAGAHQFSKLFRKKIVAKC---------GGLPLAVSTLGGLLR- 384 (588)
Q Consensus 322 ~~-------~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~i~~~I~~~c---------~GlPLai~~~~~~L~- 384 (588)
+. ....+.+.+++.++..+++...+..... ......+....|++.+ +|.|..+..+.....
T Consensus 175 l~~~~~~r~~~~~i~~~pl~~~~~~~~l~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~~~G~~r~~~~~l~~a~~ 252 (389)
T 1fnn_A 175 LDPSTRGIMGKYVIRFSPYTKDQIFDILLDRAKAGLA--EGSYSEDILQMIADITGAQTPLDTNRGDARLAIDILYRSAY 252 (389)
T ss_dssp SCHHHHHHHTTCEEECCCCBHHHHHHHHHHHHHHHBC--TTSSCHHHHHHHHHHHSBSSTTCTTSCCHHHHHHHHHHHHH
T ss_pred hCHHhhhcCCCceEEeCCCCHHHHHHHHHHHHHhhcC--CCCCCHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHHHHHH
Confidence 21 1236999999999999999887532110 0112234456788888 788765544433221
Q ss_pred -----C--CCCHHHHHHHHhcccCCCCCcccHHHHHHHHhccCchhHHHHHhHhcccC---CCceeehhHHHHHHHH---
Q 007817 385 -----T--RHTEDAWEEIVSSKMWDLPQQTDILAVLRLSYHYLPSHLKRCFTYCAIFP---KNYEFEKNELVFLWMG--- 451 (588)
Q Consensus 385 -----~--~~~~~~w~~~~~~~~~~~~~~~~i~~~l~~sy~~L~~~~k~cf~~ls~Fp---~~~~i~~~~Li~~W~a--- 451 (588)
. .-+.+............ .+.-.+..||++.+.++..++.+. .+-.+....+...+..
T Consensus 253 ~a~~~~~~~i~~~~v~~~~~~~~~~---------~~~~~l~~l~~~~~~~L~~l~~~~~~~~~~~~~~~~i~~~~~~~~~ 323 (389)
T 1fnn_A 253 AAQQNGRKHIAPEDVRKSSKEVLFG---------ISEEVLIGLPLHEKLFLLAIVRSLKISHTPYITFGDAEESYKIVCE 323 (389)
T ss_dssp HHHHTTCSSCCHHHHHHHHHHHSCC---------CCHHHHHHSCHHHHHHHHHHHHHHHHHCSSCEEHHHHHHHHHHHHH
T ss_pred HHHHhCCCCcCHHHHHHHHHHHhhh---------hHHHHHHcCCHHHHHHHHHHHHHHhhccCCCccHHHHHHHHHHHHH
Confidence 1 12333333333221110 123345678998888888887654 2225666677665533
Q ss_pred -cCCcccCCCCCCHHHHHHHHHHHHhhCCcccccc
Q 007817 452 -EGMIQQSRTGKLLEDLGNEFFCNPLSRSLFQQSS 485 (588)
Q Consensus 452 -eg~i~~~~~~~~~e~~~~~~l~~L~~rsllq~~~ 485 (588)
.|.. .........++++|...+++....
T Consensus 324 ~~~~~------~~~~~~~~~~l~~L~~~gli~~~~ 352 (389)
T 1fnn_A 324 EYGER------PRVHSQLWSYLNDLREKGIVETRQ 352 (389)
T ss_dssp HTTCC------CCCHHHHHHHHHHHHHTTSSEEEE
T ss_pred HcCCC------CCCHHHHHHHHHHHHhCCCeEEee
Confidence 1211 111345678999999999998743
No 10
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=99.55 E-value=4.8e-13 Score=138.89 Aligned_cols=297 Identities=12% Similarity=0.006 Sum_probs=181.8
Q ss_pred CCceeechhhHHHHHHHHhcCCCCCCCCeEEEEEEccCCCcHHHHHHHHHccccccc---ccccEEEEEEeCCcccHHHH
Q 007817 168 ERAVYGRDEDKARMLEMVLSDDPTTDANFCVIPIVGMAGAGKTMLAREVYNDRAVQN---FKFDVKAWVSVSDDFDVLRI 244 (588)
Q Consensus 168 ~~~~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~---~~f~~~~wv~v~~~~~~~~~ 244 (588)
+..++||+.+++++..++..... ......+.|+|++|+||||||+.+++...... ..-...+|+++....+...+
T Consensus 18 p~~~~gr~~~~~~l~~~l~~~~~--~~~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 95 (387)
T 2v1u_A 18 PDVLPHREAELRRLAEVLAPALR--GEKPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNARHRETPYRV 95 (387)
T ss_dssp CSCCTTCHHHHHHHHHTTGGGTS--SCCCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEETTTSCSHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHc--CCCCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEECCcCCCHHHH
Confidence 36799999999999999854311 12456889999999999999999998653210 01234678888888888899
Q ss_pred HHHHHHHhcCCCCC-CCCHHHHHHHHHHHh--cCCceeEEeccccccChh--HHHHh---hcccCCC--CCCcEEEEeec
Q 007817 245 SRALLESITSTNCD-FKTLNEVQVKLRIIV--DGKKFLLVLDDVWNENYN--LWEIL---KAPFMAG--ARNSKIIVTTC 314 (588)
Q Consensus 245 ~~~il~~l~~~~~~-~~~~~~l~~~l~~~l--~~k~~LLVlDdv~~~~~~--~~~~l---~~~l~~~--~~gs~ilvTTR 314 (588)
+..++..++...+. ..+..++...+...+ .+++.+|||||++..... ..+.+ ....... ..+..+|.||+
T Consensus 96 ~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~~~~~~~~~~~~I~~t~ 175 (387)
T 2v1u_A 96 ASAIAEAVGVRVPFTGLSVGEVYERLVKRLSRLRGIYIIVLDEIDFLPKRPGGQDLLYRITRINQELGDRVWVSLVGITN 175 (387)
T ss_dssp HHHHHHHHSCCCCSSCCCHHHHHHHHHHHHTTSCSEEEEEEETTTHHHHSTTHHHHHHHHHHGGGCC-----CEEEEECS
T ss_pred HHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEccHhhhcccCCCChHHHhHhhchhhcCCCceEEEEEEEC
Confidence 99999998754432 234556666666666 356889999999654322 22222 2222211 34567888887
Q ss_pred chhhhhhc-----cc--cceeeCCCCCHHHHHHHHHHhhcCC-CCCCCChhHHHHHHHHHHHhC---CCchHH-HHhhhh
Q 007817 315 HSNVASMM-----GS--VEHYNLKLLSDEYCWSVFVKHAFER-RDAGAHQFSKLFRKKIVAKCG---GLPLAV-STLGGL 382 (588)
Q Consensus 315 ~~~v~~~~-----~~--~~~~~l~~L~~~ea~~Lf~~~a~~~-~~~~~~~~~~~i~~~I~~~c~---GlPLai-~~~~~~ 382 (588)
.......+ .. ...+.+++++.++..+++...+... .....++ +..+.|++.++ |.|..+ ..+...
T Consensus 176 ~~~~~~~l~~~l~~r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~G~~r~~~~~l~~a 252 (387)
T 2v1u_A 176 SLGFVENLEPRVKSSLGEVELVFPPYTAPQLRDILETRAEEAFNPGVLDP---DVVPLCAALAAREHGDARRALDLLRVA 252 (387)
T ss_dssp CSTTSSSSCHHHHTTTTSEECCBCCCCHHHHHHHHHHHHHHHBCTTTBCS---SHHHHHHHHHHSSSCCHHHHHHHHHHH
T ss_pred CCchHhhhCHHHHhcCCCeEEeeCCCCHHHHHHHHHHHHHhhccCCCCCH---HHHHHHHHHHHHhccCHHHHHHHHHHH
Confidence 65332111 11 1479999999999999999875310 1111112 23456778887 999433 333222
Q ss_pred cc-----C--CCCHHHHHHHHhcccCCCCCcccHHHHHHHHhccCchhHHHHHhHhc-ccCCCceeehhHHHHHHHH---
Q 007817 383 LR-----T--RHTEDAWEEIVSSKMWDLPQQTDILAVLRLSYHYLPSHLKRCFTYCA-IFPKNYEFEKNELVFLWMG--- 451 (588)
Q Consensus 383 L~-----~--~~~~~~w~~~~~~~~~~~~~~~~i~~~l~~sy~~L~~~~k~cf~~ls-~Fp~~~~i~~~~Li~~W~a--- 451 (588)
.. . .-+.+.+...+... ....+.-++..||++.+..+..++ ++...-.+....+.+....
T Consensus 253 ~~~a~~~~~~~i~~~~v~~a~~~~---------~~~~~~~~~~~l~~~~~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (387)
T 2v1u_A 253 GEIAERRREERVRREHVYSARAEI---------ERDRVSEVVRTLPLHAKLVLLSIMMLEDGGRPASTGEIYERYKELTS 323 (387)
T ss_dssp HHHHHHTTCSCBCHHHHHHHHHHH---------HHHHHHHHHHSSCHHHHHHHHHHHHHSSSSCCEEHHHHHHHHHHHHH
T ss_pred HHHHHHcCCCCcCHHHHHHHHHHH---------hhchHHHHHHcCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHH
Confidence 11 1 12455555554421 123456677899998888777666 4432234555544443311
Q ss_pred -cCCcccCCCCCCHHHHHHHHHHHHhhCCccccc
Q 007817 452 -EGMIQQSRTGKLLEDLGNEFFCNPLSRSLFQQS 484 (588)
Q Consensus 452 -eg~i~~~~~~~~~e~~~~~~l~~L~~rsllq~~ 484 (588)
.| . .......+..+++.|...|+++..
T Consensus 324 ~~~-~-----~~~~~~~~~~~l~~L~~~gli~~~ 351 (387)
T 2v1u_A 324 TLG-L-----EHVTLRRVSGIISELDMLGIVKSR 351 (387)
T ss_dssp HTT-C-----CCCCHHHHHHHHHHHHHTTSEEEE
T ss_pred hcC-C-----CCCCHHHHHHHHHHHHhCCCeEEE
Confidence 12 1 112245677899999999999874
No 11
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.53 E-value=9e-13 Score=136.85 Aligned_cols=292 Identities=14% Similarity=-0.012 Sum_probs=180.4
Q ss_pred CceeechhhHHHHHHHHhcCCCCCCCCeEEEEEEccCCCcHHHHHHHHHccccccc----cc-ccEEEEEEeCCcc-cHH
Q 007817 169 RAVYGRDEDKARMLEMVLSDDPTTDANFCVIPIVGMAGAGKTMLAREVYNDRAVQN----FK-FDVKAWVSVSDDF-DVL 242 (588)
Q Consensus 169 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~----~~-f~~~~wv~v~~~~-~~~ 242 (588)
..++||+.+++++.+++..... ....+.+.|+|++|+|||+||+.+++...... .. ....+|+++.... +..
T Consensus 20 ~~l~gr~~~~~~l~~~l~~~~~--~~~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 97 (384)
T 2qby_B 20 KEIPFREDILRDAAIAIRYFVK--NEVKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVNCREVGGTPQ 97 (384)
T ss_dssp SSCTTCHHHHHHHHHHHHHHHT--TCCCCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEEHHHHCSCHH
T ss_pred CCCCChHHHHHHHHHHHHHHHc--CCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEECccCCCCHH
Confidence 6799999999999988865211 12346899999999999999999998653220 01 3456788887766 788
Q ss_pred HHHHHHHHHhcCCCC--CCCCHHHHHHHHHHHhcCCceeEEeccccccCh----hH-HHHhhcccCCCCCCcEEEEeecc
Q 007817 243 RISRALLESITSTNC--DFKTLNEVQVKLRIIVDGKKFLLVLDDVWNENY----NL-WEILKAPFMAGARNSKIIVTTCH 315 (588)
Q Consensus 243 ~~~~~il~~l~~~~~--~~~~~~~l~~~l~~~l~~k~~LLVlDdv~~~~~----~~-~~~l~~~l~~~~~gs~ilvTTR~ 315 (588)
.++..++..+.+... ...+...+...+...+..++.+|||||++.... .. ...+.... .+..+|+||+.
T Consensus 98 ~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~----~~~~iI~~t~~ 173 (384)
T 2qby_B 98 AVLSSLAGKLTGFSVPKHGINLGEYIDKIKNGTRNIRAIIYLDEVDTLVKRRGGDIVLYQLLRSD----ANISVIMISND 173 (384)
T ss_dssp HHHHHHHHHHHCSCCCSSSSCTHHHHHHHHHHHSSSCEEEEEETTHHHHHSTTSHHHHHHHHTSS----SCEEEEEECSS
T ss_pred HHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHhccCCCEEEEECHHHhccCCCCceeHHHHhcCC----cceEEEEEECC
Confidence 888998888843322 123345666777777877666999999965422 12 22333222 57889999987
Q ss_pred hhhhhhc-----c-ccceeeCCCCCHHHHHHHHHHhhcC-CCCCCCChhHHHHHHHHHHHhC---CCch-HHHHhhhhc-
Q 007817 316 SNVASMM-----G-SVEHYNLKLLSDEYCWSVFVKHAFE-RRDAGAHQFSKLFRKKIVAKCG---GLPL-AVSTLGGLL- 383 (588)
Q Consensus 316 ~~v~~~~-----~-~~~~~~l~~L~~~ea~~Lf~~~a~~-~~~~~~~~~~~~i~~~I~~~c~---GlPL-ai~~~~~~L- 383 (588)
......+ . -...+++++++.++..++|...+.. ......++ +..+.|++.|+ |.|. ++..+-...
T Consensus 174 ~~~~~~l~~~l~sr~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~---~~~~~i~~~~~~~~G~~r~a~~~l~~a~~ 250 (384)
T 2qby_B 174 INVRDYMEPRVLSSLGPSVIFKPYDAEQLKFILSKYAEYGLIKGTYDD---EILSYIAAISAKEHGDARKAVNLLFRAAQ 250 (384)
T ss_dssp TTTTTTSCHHHHHTCCCEEEECCCCHHHHHHHHHHHHHHTSCTTSCCS---HHHHHHHHHHHTTCCCHHHHHHHHHHHHH
T ss_pred CchHhhhCHHHHhcCCCeEEECCCCHHHHHHHHHHHHHhhcccCCcCH---HHHHHHHHHHHhccCCHHHHHHHHHHHHH
Confidence 5321111 1 1238999999999999999987531 11111122 23456777777 8887 333332222
Q ss_pred -c---CCCCHHHHHHHHhcccCCCCCcccHHHHHHHHhccCchhHHHHHhHhcccCCCceeehhHHHHHHHHcCCcccCC
Q 007817 384 -R---TRHTEDAWEEIVSSKMWDLPQQTDILAVLRLSYHYLPSHLKRCFTYCAIFPKNYEFEKNELVFLWMGEGMIQQSR 459 (588)
Q Consensus 384 -~---~~~~~~~w~~~~~~~~~~~~~~~~i~~~l~~sy~~L~~~~k~cf~~ls~Fp~~~~i~~~~Li~~W~aeg~i~~~~ 459 (588)
. ..-+.+.+..++... ....+..++..|+++.+..+..++....+-.+. +.....--..| .
T Consensus 251 ~a~~~~~i~~~~v~~~~~~~---------~~~~~~~~~~~l~~~~~~~l~al~~~~~~~~~~-~~~~~~~~~~g-~---- 315 (384)
T 2qby_B 251 LASGGGIIRKEHVDKAIVDY---------EQERLIEAVKALPFHYKLALRSLIESEDVMSAH-KMYTDLCNKFK-Q---- 315 (384)
T ss_dssp HTTSSSCCCHHHHHHHHHHH---------HHHHHHHHHHSSCHHHHHHHHHHHTCCBHHHHH-HHHHHHHHHTT-C----
T ss_pred HhcCCCccCHHHHHHHHHHH---------hcchHHHHHHcCCHHHHHHHHHHHHhcccChHH-HHHHHHHHHcC-C----
Confidence 1 123566666655431 123566778899998888887777611101111 11111111122 1
Q ss_pred CCCCHHHHHHHHHHHHhhCCcccccc
Q 007817 460 TGKLLEDLGNEFFCNPLSRSLFQQSS 485 (588)
Q Consensus 460 ~~~~~e~~~~~~l~~L~~rsllq~~~ 485 (588)
..........+++.|..+|+++...
T Consensus 316 -~~~~~~~~~~~l~~L~~~gli~~~~ 340 (384)
T 2qby_B 316 -KPLSYRRFSDIISELDMFGIVKIRI 340 (384)
T ss_dssp -CCCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred -CCCCHHHHHHHHHHHHhCCCEEEEe
Confidence 1122345778899999999998643
No 12
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.51 E-value=1.3e-12 Score=135.45 Aligned_cols=297 Identities=13% Similarity=0.053 Sum_probs=178.0
Q ss_pred CCceeechhhHHHHHHHHhcCCCCCCCCeEEEEEEccCCCcHHHHHHHHHccccccccc-ccEEEEEEeCCcccHHHHHH
Q 007817 168 ERAVYGRDEDKARMLEMVLSDDPTTDANFCVIPIVGMAGAGKTMLAREVYNDRAVQNFK-FDVKAWVSVSDDFDVLRISR 246 (588)
Q Consensus 168 ~~~~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~~-f~~~~wv~v~~~~~~~~~~~ 246 (588)
+..|+||+.+++.+.+++..... ......+.|+|++|+||||||+.+++...... . -...+|+++....+...++.
T Consensus 19 p~~~~gr~~e~~~l~~~l~~~~~--~~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~-~~~~~~~~i~~~~~~~~~~~~~ 95 (386)
T 2qby_A 19 PDELPHREDQIRKIASILAPLYR--EEKPNNIFIYGLTGTGKTAVVKFVLSKLHKKF-LGKFKHVYINTRQIDTPYRVLA 95 (386)
T ss_dssp CSCCTTCHHHHHHHHHSSGGGGG--TCCCCCEEEEECTTSSHHHHHHHHHHHHHHHT-CSSCEEEEEEHHHHCSHHHHHH
T ss_pred CCCCCChHHHHHHHHHHHHHHHc--CCCCCeEEEECCCCCCHHHHHHHHHHHHHHHh-cCCceEEEEECCCCCCHHHHHH
Confidence 36799999999999999874211 12446889999999999999999998654321 0 23567888777667778888
Q ss_pred HHHHHhcCCCCC-CCCHHHHHHHHHHHhc--CCceeEEeccccccC----hhHHHHhhcccCC-CCCCcEEEEeecchhh
Q 007817 247 ALLESITSTNCD-FKTLNEVQVKLRIIVD--GKKFLLVLDDVWNEN----YNLWEILKAPFMA-GARNSKIIVTTCHSNV 318 (588)
Q Consensus 247 ~il~~l~~~~~~-~~~~~~l~~~l~~~l~--~k~~LLVlDdv~~~~----~~~~~~l~~~l~~-~~~gs~ilvTTR~~~v 318 (588)
.++..++...+. ..+..+....+...+. +++.+||||+++... ...+..+...+.. ...+..+|+||+....
T Consensus 96 ~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~I~~~~~~~~ 175 (386)
T 2qby_A 96 DLLESLDVKVPFTGLSIAELYRRLVKAVRDYGSQVVIVLDEIDAFVKKYNDDILYKLSRINSEVNKSKISFIGITNDVKF 175 (386)
T ss_dssp HHTTTTSCCCCSSSCCHHHHHHHHHHHHHTCCSCEEEEEETHHHHHHSSCSTHHHHHHHHHHSCCC--EEEEEEESCGGG
T ss_pred HHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcChhhhhccCcCHHHHHHhhchhhcCCCeEEEEEEECCCCh
Confidence 888777544321 2345555566666654 458999999996532 2334444333321 2335677888876643
Q ss_pred hhhcc-------ccceeeCCCCCHHHHHHHHHHhhcCCCCCCCChhHHHHHHHHHHHhC---CCchHHHHhhhhc-c---
Q 007817 319 ASMMG-------SVEHYNLKLLSDEYCWSVFVKHAFERRDAGAHQFSKLFRKKIVAKCG---GLPLAVSTLGGLL-R--- 384 (588)
Q Consensus 319 ~~~~~-------~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~i~~~I~~~c~---GlPLai~~~~~~L-~--- 384 (588)
...+. ....+.+++++.++..+++...+..... .........+.|++.++ |.|..+..+.... .
T Consensus 176 ~~~~~~~~~~r~~~~~i~l~~l~~~~~~~il~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~G~~r~~~~ll~~a~~~a~ 253 (386)
T 2qby_A 176 VDLLDPRVKSSLSEEEIIFPPYNAEELEDILTKRAQMAFK--PGVLPDNVIKLCAALAAREHGDARRALDLLRVSGEIAE 253 (386)
T ss_dssp GGGCTTHHHHTTTTEEEEECCCCHHHHHHHHHHHHHHHBC--SSCSCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred HhhhCHHHhccCCCeeEEeCCCCHHHHHHHHHHHHHhhcc--CCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Confidence 32221 1147999999999999999986521110 11112334556777777 9998544332221 1
Q ss_pred --C--CCCHHHHHHHHhcccCCCCCcccHHHHHHHHhccCchhHHHHHhHhcccCC-C-ceeehhHHHHHH--HHc--CC
Q 007817 385 --T--RHTEDAWEEIVSSKMWDLPQQTDILAVLRLSYHYLPSHLKRCFTYCAIFPK-N-YEFEKNELVFLW--MGE--GM 454 (588)
Q Consensus 385 --~--~~~~~~w~~~~~~~~~~~~~~~~i~~~l~~sy~~L~~~~k~cf~~ls~Fp~-~-~~i~~~~Li~~W--~ae--g~ 454 (588)
. .-+.+.+..++... ....+.-++..||++.+..+..++.+-+ + ..+....+.+.. +++ |
T Consensus 254 ~~~~~~i~~~~v~~a~~~~---------~~~~~~~~~~~l~~~~~~il~ai~~~~~~g~~~~~~~~l~~~~~~~~~~~g- 323 (386)
T 2qby_A 254 RMKDTKVKEEYVYMAKEEI---------ERDRVRDIILTLPFHSKLVLMAVVSISSEENVVSTTGAVYETYLNICKKLG- 323 (386)
T ss_dssp HTTCSSCCHHHHHHHHHHH---------HHHHHHHHHHTSCHHHHHHHHHHHHHC-----CEEHHHHHHHHHHHHHHHT-
T ss_pred hcCCCccCHHHHHHHHHHH---------hhchHHHHHHcCCHHHHHHHHHHHHHHhcCCCceeHHHHHHHHHHHHHhcC-
Confidence 1 12444444443321 1235666778899888888777774322 1 224444343322 111 2
Q ss_pred cccCCCCCCHHHHHHHHHHHHhhCCccccc
Q 007817 455 IQQSRTGKLLEDLGNEFFCNPLSRSLFQQS 484 (588)
Q Consensus 455 i~~~~~~~~~e~~~~~~l~~L~~rsllq~~ 484 (588)
+. .........+++.|...|+++..
T Consensus 324 ~~-----~~~~~~~~~~l~~L~~~gli~~~ 348 (386)
T 2qby_A 324 VE-----AVTQRRVSDIINELDMVGILTAK 348 (386)
T ss_dssp CC-----CCCHHHHHHHHHHHHHHTSEEEE
T ss_pred CC-----CCCHHHHHHHHHHHHhCCCEEEE
Confidence 11 11224467789999999999764
No 13
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=99.41 E-value=3.4e-12 Score=123.08 Aligned_cols=198 Identities=12% Similarity=0.086 Sum_probs=121.1
Q ss_pred CceeechhhHHHHHHHHhcCCCCCCCCeEEEEEEccCCCcHHHHHHHHHcccccccccccEEEEEEeCCcccHHHHHHHH
Q 007817 169 RAVYGRDEDKARMLEMVLSDDPTTDANFCVIPIVGMAGAGKTMLAREVYNDRAVQNFKFDVKAWVSVSDDFDVLRISRAL 248 (588)
Q Consensus 169 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i 248 (588)
..++||+.+++.+..++.... ....+.|+|++|+||||||+.+++...... .+.. ..+....+ ...+
T Consensus 23 ~~~~g~~~~~~~l~~~l~~~~-----~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~-~~~~---~~~~~~~~----~~~~ 89 (250)
T 1njg_A 23 ADVVGQEHVLTALANGLSLGR-----IHHAYLFSGTRGVGKTSIARLLAKGLNCET-GITA---TPCGVCDN----CREI 89 (250)
T ss_dssp GGCCSCHHHHHHHHHHHHHTC-----CCSEEEEECSTTSCHHHHHHHHHHHHHCTT-CSCS---SCCSCSHH----HHHH
T ss_pred HHHhCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHHhcCCC-CCCC---CCCcccHH----HHHH
Confidence 468999999999999997643 235889999999999999999988654321 1100 00000000 0000
Q ss_pred HHHhc-----CCCCCCCCHHHHHHHHHHH----hcCCceeEEeccccccChhHHHHhhcccCCCCCCcEEEEeecchhhh
Q 007817 249 LESIT-----STNCDFKTLNEVQVKLRII----VDGKKFLLVLDDVWNENYNLWEILKAPFMAGARNSKIIVTTCHSNVA 319 (588)
Q Consensus 249 l~~l~-----~~~~~~~~~~~l~~~l~~~----l~~k~~LLVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTTR~~~v~ 319 (588)
..... ...........+...+... ..+++.+|||||++..+...++.+...+.....+..+|+||+.....
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlviDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~t~~~~~~ 169 (250)
T 1njg_A 90 EQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKL 169 (250)
T ss_dssp HTTCCSSEEEEETTCGGGHHHHHHHHHSCCCSCSSSSSEEEEEETGGGSCHHHHHHHHHHHHSCCTTEEEEEEESCGGGS
T ss_pred hccCCcceEEecCcccccHHHHHHHHHHhhhchhcCCceEEEEECcccccHHHHHHHHHHHhcCCCceEEEEEeCChHhC
Confidence 00000 0000001111111111111 13568999999998877677777777766555678888888765322
Q ss_pred -hh-ccccceeeCCCCCHHHHHHHHHHhhcCCCCCCCChhHHHHHHHHHHHhCCCchHHHHhhhhc
Q 007817 320 -SM-MGSVEHYNLKLLSDEYCWSVFVKHAFERRDAGAHQFSKLFRKKIVAKCGGLPLAVSTLGGLL 383 (588)
Q Consensus 320 -~~-~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~i~~~I~~~c~GlPLai~~~~~~L 383 (588)
.. ......+++.+++.++..+++...+...+. .. ..+....|++.|+|+|..+..+...+
T Consensus 170 ~~~l~~r~~~i~l~~l~~~e~~~~l~~~~~~~~~-~~---~~~~~~~l~~~~~G~~~~~~~~~~~~ 231 (250)
T 1njg_A 170 PVTILSRCLQFHLKALDVEQIRHQLEHILNEEHI-AH---EPRALQLLARAAEGSLRDALSLTDQA 231 (250)
T ss_dssp CHHHHTTSEEEECCCCCHHHHHHHHHHHHHHTTC-CB---CHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CHHHHHHhhhccCCCCCHHHHHHHHHHHHHhcCC-CC---CHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 11 123467999999999999999987743221 11 12345679999999999988776543
No 14
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=99.33 E-value=3.2e-11 Score=114.53 Aligned_cols=186 Identities=15% Similarity=0.068 Sum_probs=118.8
Q ss_pred CceeechhhHHHHHHHHhcCCCCCCCCeEEEEEEccCCCcHHHHHHHHHcccccccccccEEEEEEeCCcccHHHHHHHH
Q 007817 169 RAVYGRDEDKARMLEMVLSDDPTTDANFCVIPIVGMAGAGKTMLAREVYNDRAVQNFKFDVKAWVSVSDDFDVLRISRAL 248 (588)
Q Consensus 169 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i 248 (588)
..++||+..++.+.+++.... .+.+.|+|++|+|||+||+.+++...... .-...+.++.+.......+...+
T Consensus 17 ~~~~g~~~~~~~l~~~l~~~~------~~~~ll~G~~G~GKT~l~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 89 (226)
T 2chg_A 17 DEVVGQDEVIQRLKGYVERKN------IPHLLFSGPPGTGKTATAIALARDLFGEN-WRDNFIEMNASDERGIDVVRHKI 89 (226)
T ss_dssp GGCCSCHHHHHHHHHHHHTTC------CCCEEEECSTTSSHHHHHHHHHHHHHGGG-GGGGEEEEETTCTTCHHHHHHHH
T ss_pred HHHcCcHHHHHHHHHHHhCCC------CCeEEEECCCCCCHHHHHHHHHHHHhccc-cccceEEeccccccChHHHHHHH
Confidence 468999999999999997542 23489999999999999999988653322 11223344444333322222211
Q ss_pred HHHhcCCCCCCCCHHHHHHHHHHHhcCCceeEEeccccccChhHHHHhhcccCCCCCCcEEEEeecchhhh-hh-ccccc
Q 007817 249 LESITSTNCDFKTLNEVQVKLRIIVDGKKFLLVLDDVWNENYNLWEILKAPFMAGARNSKIIVTTCHSNVA-SM-MGSVE 326 (588)
Q Consensus 249 l~~l~~~~~~~~~~~~l~~~l~~~l~~k~~LLVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTTR~~~v~-~~-~~~~~ 326 (588)
........ ...+++.+|||||++.......+.+...+.....+..+|+||+..... .. .....
T Consensus 90 ~~~~~~~~---------------~~~~~~~vliiDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~l~~r~~ 154 (226)
T 2chg_A 90 KEFARTAP---------------IGGAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQSRCA 154 (226)
T ss_dssp HHHHTSCC---------------STTCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHTTSE
T ss_pred HHHhcccC---------------CCccCceEEEEeChhhcCHHHHHHHHHHHHhcCCCCeEEEEeCChhhcCHHHHHhCc
Confidence 11111000 012578899999998776666666666665555678888888765321 11 12234
Q ss_pred eeeCCCCCHHHHHHHHHHhhcCCCCCCCChhHHHHHHHHHHHhCCCchHHHHhh
Q 007817 327 HYNLKLLSDEYCWSVFVKHAFERRDAGAHQFSKLFRKKIVAKCGGLPLAVSTLG 380 (588)
Q Consensus 327 ~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~i~~~I~~~c~GlPLai~~~~ 380 (588)
.+++.+++.++..+++.+.+...+.. ...+..+.|++.++|.|..+..+.
T Consensus 155 ~i~~~~~~~~~~~~~l~~~~~~~~~~----~~~~~~~~l~~~~~g~~r~l~~~l 204 (226)
T 2chg_A 155 VFRFKPVPKEAMKKRLLEICEKEGVK----ITEDGLEALIYISGGDFRKAINAL 204 (226)
T ss_dssp EEECCCCCHHHHHHHHHHHHHHHTCC----BCHHHHHHHHHHHTTCHHHHHHHH
T ss_pred eeecCCCCHHHHHHHHHHHHHHcCCC----CCHHHHHHHHHHcCCCHHHHHHHH
Confidence 79999999999999999876432211 112345678899999999655443
No 15
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=99.23 E-value=3.5e-11 Score=121.79 Aligned_cols=275 Identities=15% Similarity=0.090 Sum_probs=146.3
Q ss_pred CceeechhhHHHHHHHHhcCCCCCCCCeEEEEEEccCCCcHHHHHHHHHcccccccccccEEEEEEeCCcccHHHHHHHH
Q 007817 169 RAVYGRDEDKARMLEMVLSDDPTTDANFCVIPIVGMAGAGKTMLAREVYNDRAVQNFKFDVKAWVSVSDDFDVLRISRAL 248 (588)
Q Consensus 169 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i 248 (588)
..++|++..++.+..++..... .......+.|+|++|+|||+||+.+++.... . ..+++.+......
T Consensus 12 ~~~ig~~~~~~~l~~~l~~~~~-~~~~~~~vll~G~~GtGKT~la~~i~~~~~~---~---~~~~~~~~~~~~~------ 78 (324)
T 1hqc_A 12 DEYIGQERLKQKLRVYLEAAKA-RKEPLEHLLLFGPPGLGKTTLAHVIAHELGV---N---LRVTSGPAIEKPG------ 78 (324)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHH-HCSCCCCCEEECCTTCCCHHHHHHHHHHHTC---C---EEEECTTTCCSHH------
T ss_pred HHhhCHHHHHHHHHHHHHHHHc-cCCCCCcEEEECCCCCCHHHHHHHHHHHhCC---C---EEEEeccccCChH------
Confidence 5689999999988888753210 0112356889999999999999999885421 1 2344443322211
Q ss_pred HHHhcCCCCCCCCHHHHHHHHHHHhcCCceeEEeccccccChhHHHHhhcccCCC------------------CCCcEEE
Q 007817 249 LESITSTNCDFKTLNEVQVKLRIIVDGKKFLLVLDDVWNENYNLWEILKAPFMAG------------------ARNSKII 310 (588)
Q Consensus 249 l~~l~~~~~~~~~~~~l~~~l~~~l~~k~~LLVlDdv~~~~~~~~~~l~~~l~~~------------------~~gs~il 310 (588)
++...+... ..++.+|+||++........+.+...+... ..+..+|
T Consensus 79 ---------------~l~~~l~~~-~~~~~~l~lDEi~~l~~~~~~~L~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~i 142 (324)
T 1hqc_A 79 ---------------DLAAILANS-LEEGDILFIDEIHRLSRQAEEHLYPAMEDFVMDIVIGQGPAARTIRLELPRFTLI 142 (324)
T ss_dssp ---------------HHHHHHTTT-CCTTCEEEETTTTSCCHHHHHHHHHHHHHSEEEECCSSSSSCCCEEEECCCCEEE
T ss_pred ---------------HHHHHHHHh-ccCCCEEEEECCcccccchHHHHHHHHHhhhhHHhccccccccccccCCCCEEEE
Confidence 111111110 135679999999776554444444332211 0235566
Q ss_pred Eeecchhh-hhhc-cc-cceeeCCCCCHHHHHHHHHHhhcCCCCCCCChhHHHHHHHHHHHhCCCchHHHHhhhhccC--
Q 007817 311 VTTCHSNV-ASMM-GS-VEHYNLKLLSDEYCWSVFVKHAFERRDAGAHQFSKLFRKKIVAKCGGLPLAVSTLGGLLRT-- 385 (588)
Q Consensus 311 vTTR~~~v-~~~~-~~-~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~i~~~I~~~c~GlPLai~~~~~~L~~-- 385 (588)
.||..... ...+ .. ...+.+.+++.++...++...+...+. .. ..+....|++.|+|.|..+..+...+..
T Consensus 143 ~~t~~~~~~~~~l~~R~~~~i~l~~~~~~e~~~~l~~~~~~~~~-~~---~~~~~~~l~~~~~G~~r~l~~~l~~~~~~a 218 (324)
T 1hqc_A 143 GATTRPGLITAPLLSRFGIVEHLEYYTPEELAQGVMRDARLLGV-RI---TEEAALEIGRRSRGTMRVAKRLFRRVRDFA 218 (324)
T ss_dssp EEESCCSSCSCSTTTTCSCEEECCCCCHHHHHHHHHHHHHTTTC-CC---CHHHHHHHHHHSCSCHHHHHHHHHHHTTTS
T ss_pred EeCCCcccCCHHHHhcccEEEecCCCCHHHHHHHHHHHHHhcCC-CC---CHHHHHHHHHHccCCHHHHHHHHHHHHHHH
Confidence 66654422 1111 11 257899999999999999887643222 11 2344567999999999988776544321
Q ss_pred ----C--CCHHHHHHHHhcccCCCCC----cccHHHHHHHHhccCchhHHHHHhHhcccCCCceeehhHHHH----HHHH
Q 007817 386 ----R--HTEDAWEEIVSSKMWDLPQ----QTDILAVLRLSYHYLPSHLKRCFTYCAIFPKNYEFEKNELVF----LWMG 451 (588)
Q Consensus 386 ----~--~~~~~w~~~~~~~~~~~~~----~~~i~~~l~~sy~~L~~~~k~cf~~ls~Fp~~~~i~~~~Li~----~W~a 451 (588)
. -+.+....+.......... +..+...+...|..=|.....+-..+++ ++..+.+ +-+.
T Consensus 219 ~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~e~~~i~~~~~~~~g~~~~~~~~a~~lgi-------~~~tl~~~l~~~~i~ 291 (324)
T 1hqc_A 219 QVAGEEVITRERALEALAALGLDELGLEKRDREILEVLILRFGGGPVGLATLATALSE-------DPGTLEEVHEPYLIR 291 (324)
T ss_dssp TTTSCSCCCHHHHHHHHHHHTCCTTCCCHHHHHHHHHHHHHSCSSCCCHHHHHHHTTS-------CHHHHHHHTHHHHHH
T ss_pred HHhcCCCCCHHHHHHHHHHhcccccCCCHHHHHHHHHHHHHhcCCCchHHHHHHHhCC-------CHHHHHHHHhHHHHH
Confidence 1 2334444333321111000 0111111111221111122233333332 2333222 2356
Q ss_pred cCCcccCCCCCCHHHHHHHHHH-HHhhCCcccc
Q 007817 452 EGMIQQSRTGKLLEDLGNEFFC-NPLSRSLFQQ 483 (588)
Q Consensus 452 eg~i~~~~~~~~~e~~~~~~l~-~L~~rsllq~ 483 (588)
.|++.....+....+.|.+||+ ++.+|+|+||
T Consensus 292 ~~li~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 324 (324)
T 1hqc_A 292 QGLLKRTPRGRVPTELAYRHLGYPPPVGPLLEP 324 (324)
T ss_dssp TTSEEEETTEEEECHHHHHHTTCCCCC------
T ss_pred hcchhcCCccceecHHHHHHHhcCCCCCCCCCC
Confidence 7888765666777888999998 9999999986
No 16
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.18 E-value=1.9e-10 Score=116.06 Aligned_cols=186 Identities=16% Similarity=0.132 Sum_probs=117.8
Q ss_pred CceeechhhHHHHHHHHhcCCCCCCCCeEEEEEEccCCCcHHHHHHHHHcccccccccccEEEEEEeCCcccHHHHHHHH
Q 007817 169 RAVYGRDEDKARMLEMVLSDDPTTDANFCVIPIVGMAGAGKTMLAREVYNDRAVQNFKFDVKAWVSVSDDFDVLRISRAL 248 (588)
Q Consensus 169 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i 248 (588)
..++|++..++.+.+++.... .+.+.|+|++|+|||++|+.+++...... .....++++.++...... .+.+
T Consensus 21 ~~~~g~~~~~~~l~~~l~~~~------~~~~ll~G~~G~GKt~la~~l~~~l~~~~-~~~~~~~~~~~~~~~~~~-i~~~ 92 (323)
T 1sxj_B 21 SDIVGNKETIDRLQQIAKDGN------MPHMIISGMPGIGKTTSVHCLAHELLGRS-YADGVLELNASDDRGIDV-VRNQ 92 (323)
T ss_dssp GGCCSCTHHHHHHHHHHHSCC------CCCEEEECSTTSSHHHHHHHHHHHHHGGG-HHHHEEEECTTSCCSHHH-HHTH
T ss_pred HHHHCCHHHHHHHHHHHHcCC------CCeEEEECcCCCCHHHHHHHHHHHhcCCc-ccCCEEEecCccccChHH-HHHH
Confidence 468999999999999987543 22388999999999999999998653322 111234444443322221 1222
Q ss_pred HHHhcCCCCCCCCHHHHHHHHHHHh-cCCceeEEeccccccChhHHHHhhcccCCCCCCcEEEEeecchhh-hhh-cccc
Q 007817 249 LESITSTNCDFKTLNEVQVKLRIIV-DGKKFLLVLDDVWNENYNLWEILKAPFMAGARNSKIIVTTCHSNV-ASM-MGSV 325 (588)
Q Consensus 249 l~~l~~~~~~~~~~~~l~~~l~~~l-~~k~~LLVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTTR~~~v-~~~-~~~~ 325 (588)
+..+.... ..+ .+++.+|||||++......++.+...+.....++.+|+||+...- ... ....
T Consensus 93 ~~~~~~~~--------------~~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~~~~~~l~~~l~sr~ 158 (323)
T 1sxj_B 93 IKHFAQKK--------------LHLPPGKHKIVILDEADSMTAGAQQALRRTMELYSNSTRFAFACNQSNKIIEPLQSQC 158 (323)
T ss_dssp HHHHHHBC--------------CCCCTTCCEEEEEESGGGSCHHHHHTTHHHHHHTTTTEEEEEEESCGGGSCHHHHTTS
T ss_pred HHHHHhcc--------------ccCCCCCceEEEEECcccCCHHHHHHHHHHHhccCCCceEEEEeCChhhchhHHHhhc
Confidence 22211000 001 356889999999877666666666666555567788888866432 111 1233
Q ss_pred ceeeCCCCCHHHHHHHHHHhhcCCCCCCCChhHHHHHHHHHHHhCCCchH-HHHhh
Q 007817 326 EHYNLKLLSDEYCWSVFVKHAFERRDAGAHQFSKLFRKKIVAKCGGLPLA-VSTLG 380 (588)
Q Consensus 326 ~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~i~~~I~~~c~GlPLa-i~~~~ 380 (588)
..+++.+++.++..+++...+...+. .. ..+....|++.|+|.|.. +..+.
T Consensus 159 ~~i~~~~~~~~~~~~~l~~~~~~~~~-~~---~~~~~~~l~~~~~G~~r~a~~~l~ 210 (323)
T 1sxj_B 159 AILRYSKLSDEDVLKRLLQIIKLEDV-KY---TNDGLEAIIFTAEGDMRQAINNLQ 210 (323)
T ss_dssp EEEECCCCCHHHHHHHHHHHHHHHTC-CB---CHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred eEEeecCCCHHHHHHHHHHHHHHcCC-CC---CHHHHHHHHHHcCCCHHHHHHHHH
Confidence 58999999999999999887632221 11 123456799999999954 44443
No 17
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=99.03 E-value=2.2e-09 Score=108.44 Aligned_cols=188 Identities=15% Similarity=0.071 Sum_probs=117.9
Q ss_pred CceeechhhHHHHHHHHhcCCCCCCCCeEEEEEEccCCCcHHHHHHHHHcccccccccccEEEEEEeCCcccHHHHHHHH
Q 007817 169 RAVYGRDEDKARMLEMVLSDDPTTDANFCVIPIVGMAGAGKTMLAREVYNDRAVQNFKFDVKAWVSVSDDFDVLRISRAL 248 (588)
Q Consensus 169 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i 248 (588)
..++|++..++.+..++.... .+.+.|+|++|+||||+|+.+++...... .-...+.++.++......+ ...
T Consensus 25 ~~~~g~~~~~~~l~~~l~~~~------~~~~ll~G~~G~GKT~la~~l~~~l~~~~-~~~~~~~~~~~~~~~~~~~-~~~ 96 (327)
T 1iqp_A 25 DDIVGQEHIVKRLKHYVKTGS------MPHLLFAGPPGVGKTTAALALARELFGEN-WRHNFLELNASDERGINVI-REK 96 (327)
T ss_dssp TTCCSCHHHHHHHHHHHHHTC------CCEEEEESCTTSSHHHHHHHHHHHHHGGG-HHHHEEEEETTCHHHHHTT-HHH
T ss_pred HHhhCCHHHHHHHHHHHHcCC------CCeEEEECcCCCCHHHHHHHHHHHhcCCc-ccCceEEeeccccCchHHH-HHH
Confidence 458999999999999987643 23489999999999999999998643221 1112333443332111111 111
Q ss_pred HHHhcCCCCCCCCHHHHHHHHHHHhcCCceeEEeccccccChhHHHHhhcccCCCCCCcEEEEeecchhh-hhhc-cccc
Q 007817 249 LESITSTNCDFKTLNEVQVKLRIIVDGKKFLLVLDDVWNENYNLWEILKAPFMAGARNSKIIVTTCHSNV-ASMM-GSVE 326 (588)
Q Consensus 249 l~~l~~~~~~~~~~~~l~~~l~~~l~~k~~LLVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTTR~~~v-~~~~-~~~~ 326 (588)
+..+.... ....+++.++|+||++..+...++.+...+.....++++|+||..... ...+ ....
T Consensus 97 ~~~~~~~~--------------~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~~l~~~l~sr~~ 162 (327)
T 1iqp_A 97 VKEFARTK--------------PIGGASFKIIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSRCA 162 (327)
T ss_dssp HHHHHHSC--------------CGGGCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHHTEE
T ss_pred HHHHHhhC--------------CcCCCCCeEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCCccccCHHHHhhCc
Confidence 11100000 011256889999999877766777777666555567888888866532 1111 1234
Q ss_pred eeeCCCCCHHHHHHHHHHhhcCCCCCCCChhHHHHHHHHHHHhCCCchHHHHhhhh
Q 007817 327 HYNLKLLSDEYCWSVFVKHAFERRDAGAHQFSKLFRKKIVAKCGGLPLAVSTLGGL 382 (588)
Q Consensus 327 ~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~i~~~I~~~c~GlPLai~~~~~~ 382 (588)
.+.+.+++.++...++...+...+.. ...+....|++.++|.|..+..+...
T Consensus 163 ~~~~~~l~~~~~~~~l~~~~~~~~~~----~~~~~~~~l~~~~~g~~r~~~~~l~~ 214 (327)
T 1iqp_A 163 IFRFRPLRDEDIAKRLRYIAENEGLE----LTEEGLQAILYIAEGDMRRAINILQA 214 (327)
T ss_dssp EEECCCCCHHHHHHHHHHHHHTTTCE----ECHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred EEEecCCCHHHHHHHHHHHHHhcCCC----CCHHHHHHHHHHCCCCHHHHHHHHHH
Confidence 78999999999999998876432221 12334567899999999976554433
No 18
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=98.90 E-value=1.7e-08 Score=103.90 Aligned_cols=195 Identities=12% Similarity=0.120 Sum_probs=116.7
Q ss_pred CceeechhhHHHHHHHHhcCCCCCCCCeEEEEEEccCCCcHHHHHHHHHcccccccccccEEEEEEeCCcccHHHHHHHH
Q 007817 169 RAVYGRDEDKARMLEMVLSDDPTTDANFCVIPIVGMAGAGKTMLAREVYNDRAVQNFKFDVKAWVSVSDDFDVLRISRAL 248 (588)
Q Consensus 169 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i 248 (588)
..++|++..++.+...+.... ....+.|+|++|+||||+|+.+++...... .+.. ..+... .....+
T Consensus 16 ~~~vg~~~~~~~L~~~l~~~~-----~~~~~ll~G~~G~GKT~la~~la~~l~~~~-~~~~---~~~~~~----~~~~~~ 82 (373)
T 1jr3_A 16 ADVVGQEHVLTALANGLSLGR-----IHHAYLFSGTRGVGKTSIARLLAKGLNCET-GITA---TPCGVC----DNCREI 82 (373)
T ss_dssp TTSCSCHHHHHHHHHHHHHTC-----CCSEEEEESCTTSSHHHHHHHHHHHHSCTT-CSCS---SCCSSS----HHHHHH
T ss_pred hhccCcHHHHHHHHHHHHhCC-----CCeEEEEECCCCCCHHHHHHHHHHHhCCCC-CCCC---CCCccc----HHHHHH
Confidence 458999999999999997643 234788999999999999999988654321 1100 000000 001111
Q ss_pred HHH-------hcCCC-CCCCCHHHHHHHHHHH-hcCCceeEEeccccccChhHHHHhhcccCCCCCCcEEEEeecchh-h
Q 007817 249 LES-------ITSTN-CDFKTLNEVQVKLRII-VDGKKFLLVLDDVWNENYNLWEILKAPFMAGARNSKIIVTTCHSN-V 318 (588)
Q Consensus 249 l~~-------l~~~~-~~~~~~~~l~~~l~~~-l~~k~~LLVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTTR~~~-v 318 (588)
... +.... ........+...+... ..+++.+||+||++..+....+.+...+.....+..+|++|.... +
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~~l 162 (373)
T 1jr3_A 83 EQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKL 162 (373)
T ss_dssp HTSCCSSCEEEETTCSCCSSCHHHHHHHTTSCCSSSSSEEEEEECGGGSCHHHHHHHHHHHHSCCSSEEEEEEESCGGGS
T ss_pred hccCCCceEEecccccCCHHHHHHHHHHHhhccccCCeEEEEEECcchhcHHHHHHHHHHHhcCCCceEEEEEeCChHhC
Confidence 100 00000 0112222222221111 135678999999987776677777766655555677777776443 2
Q ss_pred hhh-ccccceeeCCCCCHHHHHHHHHHhhcCCCCCCCChhHHHHHHHHHHHhCCCchHHHHhh
Q 007817 319 ASM-MGSVEHYNLKLLSDEYCWSVFVKHAFERRDAGAHQFSKLFRKKIVAKCGGLPLAVSTLG 380 (588)
Q Consensus 319 ~~~-~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~i~~~I~~~c~GlPLai~~~~ 380 (588)
... ......+++.+++.++...++.+.+...+. .. ..+....|++.++|.|..+..+.
T Consensus 163 ~~~l~sr~~~i~~~~l~~~~~~~~l~~~~~~~~~-~~---~~~a~~~l~~~~~G~~r~~~~~l 221 (373)
T 1jr3_A 163 PVTILSRCLQFHLKALDVEQIRHQLEHILNEEHI-AH---EPRALQLLARAAEGSLRDALSLT 221 (373)
T ss_dssp CHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTC-CB---CHHHHHHHHHHSSSCHHHHHHHH
T ss_pred cHHHHhheeEeeCCCCCHHHHHHHHHHHHHHcCC-CC---CHHHHHHHHHHCCCCHHHHHHHH
Confidence 111 123467999999999999999876532221 11 12335679999999999877654
No 19
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=98.87 E-value=1.4e-08 Score=101.10 Aligned_cols=176 Identities=10% Similarity=0.055 Sum_probs=106.6
Q ss_pred ceeechhhHHHHHHHHhcCCCCCCCCeEEEEEEccCCCcHHHHHHHHHcccccccc--cc--cEEEEEEeCCcccHHHHH
Q 007817 170 AVYGRDEDKARMLEMVLSDDPTTDANFCVIPIVGMAGAGKTMLAREVYNDRAVQNF--KF--DVKAWVSVSDDFDVLRIS 245 (588)
Q Consensus 170 ~~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~--~f--~~~~wv~v~~~~~~~~~~ 245 (588)
.+.||++|.++|...|...-. .+....+.|+|++|+|||++++.+++....... .. -..+.+++..-.+...++
T Consensus 21 ~L~~Re~E~~~i~~~L~~~i~--~~~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc~~~~t~~~~~ 98 (318)
T 3te6_A 21 LLKSQVEDFTRIFLPIYDSLM--SSQNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDALELAGMDALY 98 (318)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH--TTCCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEETTCCC--HHHH
T ss_pred ccCCHHHHHHHHHHHHHHHhc--CCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEeccccCCHHHHH
Confidence 378999999999988865321 235678899999999999999999987743210 11 135677777777888999
Q ss_pred HHHHHHhcCCCCC-CCCHHHHHHHHHHH--hcCCceeEEeccccccC-hhHHHHhhcccCCCCCCcEEEEeecchhhhh-
Q 007817 246 RALLESITSTNCD-FKTLNEVQVKLRII--VDGKKFLLVLDDVWNEN-YNLWEILKAPFMAGARNSKIIVTTCHSNVAS- 320 (588)
Q Consensus 246 ~~il~~l~~~~~~-~~~~~~l~~~l~~~--l~~k~~LLVlDdv~~~~-~~~~~~l~~~l~~~~~gs~ilvTTR~~~v~~- 320 (588)
..|++++.+.... ....+.+...+... -.+++++++||+++.-. .+..-.+............||.++...+...
T Consensus 99 ~~I~~~L~g~~~~~~~~~~~L~~~f~~~~~~~~~~~ii~lDE~d~l~~q~~L~~l~~~~~~~~s~~~vI~i~n~~d~~~~ 178 (318)
T 3te6_A 99 EKIWFAISKENLCGDISLEALNFYITNVPKAKKRKTLILIQNPENLLSEKILQYFEKWISSKNSKLSIICVGGHNVTIRE 178 (318)
T ss_dssp HHHHHHHSCCC--CCCCHHHHHHHHHHSCGGGSCEEEEEEECCSSSCCTHHHHHHHHHHHCSSCCEEEEEECCSSCCCHH
T ss_pred HHHHHHhcCCCCCchHHHHHHHHHHHHhhhccCCceEEEEecHHHhhcchHHHHHHhcccccCCcEEEEEEecCcccchh
Confidence 9999999654322 22333333333332 24678999999996542 1111111111001111223344443322211
Q ss_pred hc------c-ccceeeCCCCCHHHHHHHHHHhhc
Q 007817 321 MM------G-SVEHYNLKLLSDEYCWSVFVKHAF 347 (588)
Q Consensus 321 ~~------~-~~~~~~l~~L~~~ea~~Lf~~~a~ 347 (588)
.+ . ....+.+.+++.++-.+++.+++-
T Consensus 179 ~L~~~v~SR~~~~~i~F~pYt~~el~~Il~~Rl~ 212 (318)
T 3te6_A 179 QINIMPSLKAHFTEIKLNKVDKNELQQMIITRLK 212 (318)
T ss_dssp HHHTCHHHHTTEEEEECCCCCHHHHHHHHHHHHH
T ss_pred hcchhhhccCCceEEEeCCCCHHHHHHHHHHHHH
Confidence 11 1 124699999999999999988763
No 20
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=98.85 E-value=2.1e-08 Score=100.80 Aligned_cols=183 Identities=14% Similarity=0.079 Sum_probs=115.1
Q ss_pred CceeechhhHHHHHHHHhcCCCCCCCCeEEEEEEccCCCcHHHHHHHHHcccccccccccEEEEEEeCCcccHHHHHHHH
Q 007817 169 RAVYGRDEDKARMLEMVLSDDPTTDANFCVIPIVGMAGAGKTMLAREVYNDRAVQNFKFDVKAWVSVSDDFDVLRISRAL 248 (588)
Q Consensus 169 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i 248 (588)
.+++|++..++.+.+++... ..+.+.|+|++|+|||++|+.+++...... .-...+.++.+....
T Consensus 17 ~~~~g~~~~~~~l~~~l~~~------~~~~~ll~G~~G~GKt~la~~l~~~l~~~~-~~~~~~~~~~~~~~~-------- 81 (319)
T 2chq_A 17 DEVVGQDEVIQRLKGYVERK------NIPHLLFSGPPGTGKTATAIALARDLFGEN-WRDNFIEMNASDERG-------- 81 (319)
T ss_dssp GGSCSCHHHHHHHHTTTTTT------CCCCEEEESSSSSSHHHHHHHHHHHHHTTC-HHHHCEEEETTSTTC--------
T ss_pred HHHhCCHHHHHHHHHHHhCC------CCCeEEEECcCCcCHHHHHHHHHHHhcCCc-ccCCeEEEeCccccC--------
Confidence 45899999999999888643 223389999999999999999988642211 111122334332211
Q ss_pred HHHhcCCCCCCCCHHHHHHHHHHH--h-cCCceeEEeccccccChhHHHHhhcccCCCCCCcEEEEeecchh-hhhh-cc
Q 007817 249 LESITSTNCDFKTLNEVQVKLRII--V-DGKKFLLVLDDVWNENYNLWEILKAPFMAGARNSKIIVTTCHSN-VASM-MG 323 (588)
Q Consensus 249 l~~l~~~~~~~~~~~~l~~~l~~~--l-~~k~~LLVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTTR~~~-v~~~-~~ 323 (588)
.............. + .+++.++|+|+++.......+.+...+.....++.+|+||.... +... ..
T Consensus 82 ----------~~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~~l~~~l~s 151 (319)
T 2chq_A 82 ----------IDVVRHKIKEFARTAPIGGAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQS 151 (319)
T ss_dssp ----------TTTSSHHHHHHHHSCCSSSCCCEEEEEETGGGSCHHHHHTTGGGTSSSSSSEEEEEEESCGGGSCHHHHT
T ss_pred ----------hHHHHHHHHHHHhcCCCCCCCceEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCChhhcchHHHh
Confidence 11111111111111 1 25688999999987766667777777766556778888876543 2111 12
Q ss_pred ccceeeCCCCCHHHHHHHHHHhhcCCCCCCCChhHHHHHHHHHHHhCCCchHHHHhh
Q 007817 324 SVEHYNLKLLSDEYCWSVFVKHAFERRDAGAHQFSKLFRKKIVAKCGGLPLAVSTLG 380 (588)
Q Consensus 324 ~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~i~~~I~~~c~GlPLai~~~~ 380 (588)
....+++.+++.++...++...+...+.. ...+....|++.++|.|..+....
T Consensus 152 r~~~i~~~~~~~~~~~~~l~~~~~~~~~~----i~~~~l~~l~~~~~G~~r~~~~~l 204 (319)
T 2chq_A 152 RCAVFRFKPVPKEAMKKRLLEICEKEGVK----ITEDGLEALIYISGGDFRKAINAL 204 (319)
T ss_dssp TCEEEECCCCCHHHHHHHHHHHHHTTCCC----BCHHHHHHHHHTTTTCHHHHHHHH
T ss_pred hCeEEEecCCCHHHHHHHHHHHHHHcCCC----CCHHHHHHHHHHcCCCHHHHHHHH
Confidence 33579999999999999998876432221 122345678899999998655443
No 21
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.67 E-value=3e-07 Score=93.79 Aligned_cols=195 Identities=11% Similarity=0.045 Sum_probs=114.8
Q ss_pred CceeechhhHHHHHHHHhcCCCCCCCCeEEEEEEccCCCcHHHHHHHHHccccccccccc-EEEEEEeCCcccHHHHHHH
Q 007817 169 RAVYGRDEDKARMLEMVLSDDPTTDANFCVIPIVGMAGAGKTMLAREVYNDRAVQNFKFD-VKAWVSVSDDFDVLRISRA 247 (588)
Q Consensus 169 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~~f~-~~~wv~v~~~~~~~~~~~~ 247 (588)
..++|++..++.+..++.... .+.+.|+|++|+||||+|+.+++...... .+. ....++.++......+ .+
T Consensus 37 ~~i~g~~~~~~~l~~~l~~~~------~~~~ll~G~~G~GKT~la~~la~~l~~~~-~~~~~~~~~~~~~~~~~~~~-~~ 108 (353)
T 1sxj_D 37 DEVTAQDHAVTVLKKTLKSAN------LPHMLFYGPPGTGKTSTILALTKELYGPD-LMKSRILELNASDERGISIV-RE 108 (353)
T ss_dssp TTCCSCCTTHHHHHHHTTCTT------CCCEEEECSTTSSHHHHHHHHHHHHHHHH-HHTTSEEEECSSSCCCHHHH-TT
T ss_pred HHhhCCHHHHHHHHHHHhcCC------CCEEEEECCCCCCHHHHHHHHHHHhCCCc-ccccceEEEccccccchHHH-HH
Confidence 468999999999999986542 22388999999999999999988653211 111 2233444433222222 22
Q ss_pred HHHHhcCC-CCCCCCHHHHHHHHHHHhcCCceeEEeccccccChhHHHHhhcccCCCCCCcEEEEeecchh-hhhhc-cc
Q 007817 248 LLESITST-NCDFKTLNEVQVKLRIIVDGKKFLLVLDDVWNENYNLWEILKAPFMAGARNSKIIVTTCHSN-VASMM-GS 324 (588)
Q Consensus 248 il~~l~~~-~~~~~~~~~l~~~l~~~l~~k~~LLVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTTR~~~-v~~~~-~~ 324 (588)
.+..+... ....... .....-.+++-+|++|++........+.+...+.......++|++|.... +...+ ..
T Consensus 109 ~~~~~~~~~~~~~~~~-----~~~~~~~~~~~vliiDE~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~l~sR 183 (353)
T 1sxj_D 109 KVKNFARLTVSKPSKH-----DLENYPCPPYKIIILDEADSMTADAQSALRRTMETYSGVTRFCLICNYVTRIIDPLASQ 183 (353)
T ss_dssp HHHHHHHSCCCCCCTT-----HHHHSCCCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHHH
T ss_pred HHHHHhhhcccccchh-----hcccCCCCCceEEEEECCCccCHHHHHHHHHHHHhcCCCceEEEEeCchhhCcchhhcc
Confidence 22221111 1000000 00111123556999999977666556666665554445667777775442 21111 12
Q ss_pred cceeeCCCCCHHHHHHHHHHhhcCCCCCCCChhHHHHHHHHHHHhCCCchHHHHhh
Q 007817 325 VEHYNLKLLSDEYCWSVFVKHAFERRDAGAHQFSKLFRKKIVAKCGGLPLAVSTLG 380 (588)
Q Consensus 325 ~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~i~~~I~~~c~GlPLai~~~~ 380 (588)
...+.+.+++.++....+...+...+. ..+ .+..+.|++.++|.|..+..+.
T Consensus 184 ~~~i~~~~~~~~~~~~~l~~~~~~~~~-~i~---~~~l~~l~~~~~G~~r~~~~~l 235 (353)
T 1sxj_D 184 CSKFRFKALDASNAIDRLRFISEQENV-KCD---DGVLERILDISAGDLRRGITLL 235 (353)
T ss_dssp SEEEECCCCCHHHHHHHHHHHHHTTTC-CCC---HHHHHHHHHHTSSCHHHHHHHH
T ss_pred CceEEeCCCCHHHHHHHHHHHHHHhCC-CCC---HHHHHHHHHHcCCCHHHHHHHH
Confidence 347899999999999999887643221 112 3345679999999998754443
No 22
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=98.65 E-value=8.4e-08 Score=88.32 Aligned_cols=149 Identities=15% Similarity=0.144 Sum_probs=83.9
Q ss_pred CceeechhhHHHHHHHHhcCCCCCCCCeEEEEEEccCCCcHHHHHHHHHcccccccc----cccEEEEEEeCCcccHHHH
Q 007817 169 RAVYGRDEDKARMLEMVLSDDPTTDANFCVIPIVGMAGAGKTMLAREVYNDRAVQNF----KFDVKAWVSVSDDFDVLRI 244 (588)
Q Consensus 169 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~----~f~~~~wv~v~~~~~~~~~ 244 (588)
..++||+.+++++.+++... ....+.|+|++|+|||+||+.+++....... .....++++++...
T Consensus 22 ~~~~g~~~~~~~l~~~l~~~------~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----- 90 (195)
T 1jbk_A 22 DPVIGRDEEIRRTIQVLQRR------TKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMGALV----- 90 (195)
T ss_dssp CCCCSCHHHHHHHHHHHTSS------SSCEEEEECCTTSCHHHHHHHHHHHHHHTCSCGGGTTCEEEEECHHHHH-----
T ss_pred cccccchHHHHHHHHHHhcC------CCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCcEEEeeHHHHh-----
Confidence 45899999999999998653 2356789999999999999999886532110 01233444432110
Q ss_pred HHHHHHHhcCCCCCCCCHHHHHHHHHHHh-----cCCceeEEeccccccC--------hhHHHHhhcccCCCCCCcEEEE
Q 007817 245 SRALLESITSTNCDFKTLNEVQVKLRIIV-----DGKKFLLVLDDVWNEN--------YNLWEILKAPFMAGARNSKIIV 311 (588)
Q Consensus 245 ~~~il~~l~~~~~~~~~~~~l~~~l~~~l-----~~k~~LLVlDdv~~~~--------~~~~~~l~~~l~~~~~gs~ilv 311 (588)
.. ..........+...+ .+++.+|||||++... ....+.+...+.. .+..+|+
T Consensus 91 --------~~----~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDe~~~l~~~~~~~~~~~~~~~l~~~~~~--~~~~~i~ 156 (195)
T 1jbk_A 91 --------AG----AKYRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADGAMDAGNMLKPALAR--GELHCVG 156 (195)
T ss_dssp --------TT----TCSHHHHHHHHHHHHHHHHHSTTTEEEEEETGGGGTT------CCCCHHHHHHHHHT--TSCCEEE
T ss_pred --------cc----CCccccHHHHHHHHHHHHhhcCCCeEEEEeCHHHHhccCcccchHHHHHHHHHhhcc--CCeEEEE
Confidence 00 011111111122211 3567899999996542 1112223222221 2456777
Q ss_pred eecchhhhh------h-ccccceeeCCCCCHHHHHHHH
Q 007817 312 TTCHSNVAS------M-MGSVEHYNLKLLSDEYCWSVF 342 (588)
Q Consensus 312 TTR~~~v~~------~-~~~~~~~~l~~L~~~ea~~Lf 342 (588)
||....... . ......+.+.+++.++..+++
T Consensus 157 ~~~~~~~~~~~~~~~~l~~r~~~i~~~~p~~~~~~~il 194 (195)
T 1jbk_A 157 ATTLDEYRQYIEKDAALERRFQKVFVAEPSVEDTIAIL 194 (195)
T ss_dssp EECHHHHHHHTTTCHHHHTTEEEEECCCCCHHHHHTTC
T ss_pred eCCHHHHHHHHhcCHHHHHHhceeecCCCCHHHHHHHh
Confidence 776654221 1 122236889999988876553
No 23
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=98.64 E-value=6.5e-07 Score=90.82 Aligned_cols=179 Identities=14% Similarity=0.107 Sum_probs=107.0
Q ss_pred CCceeechhhHHHHHHHHhcCCCCCCCCeEEEEEEccCCCcHHHHHHHHHcccccccccccEEEEEEeCCcccHHHHHHH
Q 007817 168 ERAVYGRDEDKARMLEMVLSDDPTTDANFCVIPIVGMAGAGKTMLAREVYNDRAVQNFKFDVKAWVSVSDDFDVLRISRA 247 (588)
Q Consensus 168 ~~~~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~ 247 (588)
-..++|++..++.+..++..... .......+.|+|++|+|||+||+.+++.... .| +.++.+...
T Consensus 28 ~~~iiG~~~~~~~l~~~l~~~~~-~~~~~~~vll~G~~GtGKT~la~~ia~~~~~---~~---~~~~~~~~~-------- 92 (338)
T 3pfi_A 28 FDGYIGQESIKKNLNVFIAAAKK-RNECLDHILFSGPAGLGKTTLANIISYEMSA---NI---KTTAAPMIE-------- 92 (338)
T ss_dssp GGGCCSCHHHHHHHHHHHHHHHH-TTSCCCCEEEECSTTSSHHHHHHHHHHHTTC---CE---EEEEGGGCC--------
T ss_pred HHHhCChHHHHHHHHHHHHHHHh-cCCCCCeEEEECcCCCCHHHHHHHHHHHhCC---Ce---EEecchhcc--------
Confidence 35689999999999988865310 0123456899999999999999999875321 22 223332111
Q ss_pred HHHHhcCCCCCCCCHHHHHHHHHHHhcCCceeEEeccccccChhHHHHhhcccCCCC------------------CCcEE
Q 007817 248 LLESITSTNCDFKTLNEVQVKLRIIVDGKKFLLVLDDVWNENYNLWEILKAPFMAGA------------------RNSKI 309 (588)
Q Consensus 248 il~~l~~~~~~~~~~~~l~~~l~~~l~~k~~LLVlDdv~~~~~~~~~~l~~~l~~~~------------------~gs~i 309 (588)
........+.. ..+..+|+||++..........+...+.... ++..+
T Consensus 93 -------------~~~~~~~~~~~--~~~~~vl~lDEi~~l~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (338)
T 3pfi_A 93 -------------KSGDLAAILTN--LSEGDILFIDEIHRLSPAIEEVLYPAMEDYRLDIIIGSGPAAQTIKIDLPKFTL 157 (338)
T ss_dssp -------------SHHHHHHHHHT--CCTTCEEEEETGGGCCHHHHHHHHHHHHTSCC---------CCCCCCCCCCCEE
T ss_pred -------------chhHHHHHHHh--ccCCCEEEEechhhcCHHHHHHHHHHHHhccchhhcccCccccceecCCCCeEE
Confidence 11111111111 2457899999998766555555544433211 12456
Q ss_pred EEeecchhh-hhhc-c-ccceeeCCCCCHHHHHHHHHHhhcCCCCCCCChhHHHHHHHHHHHhCCCchHHHHhh
Q 007817 310 IVTTCHSNV-ASMM-G-SVEHYNLKLLSDEYCWSVFVKHAFERRDAGAHQFSKLFRKKIVAKCGGLPLAVSTLG 380 (588)
Q Consensus 310 lvTTR~~~v-~~~~-~-~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~i~~~I~~~c~GlPLai~~~~ 380 (588)
|.||..... ...+ . ....+.+.+++.++...++.+.+..... ....+....|++.+.|.|-.+..+.
T Consensus 158 i~atn~~~~l~~~L~~R~~~~i~l~~~~~~e~~~il~~~~~~~~~----~~~~~~~~~l~~~~~G~~r~l~~~l 227 (338)
T 3pfi_A 158 IGATTRAGMLSNPLRDRFGMQFRLEFYKDSELALILQKAALKLNK----TCEEKAALEIAKRSRSTPRIALRLL 227 (338)
T ss_dssp EEEESCGGGSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHTTC----EECHHHHHHHHHTTTTCHHHHHHHH
T ss_pred EEeCCCccccCHHHHhhcCEEeeCCCcCHHHHHHHHHHHHHhcCC----CCCHHHHHHHHHHHCcCHHHHHHHH
Confidence 666654322 1111 1 2357999999999999999887643221 1223445678889999996655443
No 24
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=98.60 E-value=8.3e-08 Score=92.04 Aligned_cols=175 Identities=14% Similarity=0.043 Sum_probs=100.8
Q ss_pred Cceeech---hhHHHHHHHHhcCCCCCCCCeEEEEEEccCCCcHHHHHHHHHcccccccccccEEEEEEeCCcccHHHHH
Q 007817 169 RAVYGRD---EDKARMLEMVLSDDPTTDANFCVIPIVGMAGAGKTMLAREVYNDRAVQNFKFDVKAWVSVSDDFDVLRIS 245 (588)
Q Consensus 169 ~~~vGR~---~e~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~ 245 (588)
..|+|++ ..++.+..++... ....+.|+|++|+||||||+.+++..... ...+.|++++...+..
T Consensus 28 ~~~~~~~~~~~~~~~l~~~~~~~------~~~~~ll~G~~G~GKT~la~~l~~~~~~~---~~~~~~~~~~~~~~~~--- 95 (242)
T 3bos_A 28 TSYYPAAGNDELIGALKSAASGD------GVQAIYLWGPVKSGRTHLIHAACARANEL---ERRSFYIPLGIHASIS--- 95 (242)
T ss_dssp TTSCC--CCHHHHHHHHHHHHTC------SCSEEEEECSTTSSHHHHHHHHHHHHHHT---TCCEEEEEGGGGGGSC---
T ss_pred hhccCCCCCHHHHHHHHHHHhCC------CCCeEEEECCCCCCHHHHHHHHHHHHHHc---CCeEEEEEHHHHHHHH---
Confidence 4566633 4556666665432 23678899999999999999999865432 2245666664421100
Q ss_pred HHHHHHhcCCCCCCCCHHHHHHHHHHHhcCCceeEEeccccccChhH--HHHhhcccCCC-CCC-cEEEEeecchhh---
Q 007817 246 RALLESITSTNCDFKTLNEVQVKLRIIVDGKKFLLVLDDVWNENYNL--WEILKAPFMAG-ARN-SKIIVTTCHSNV--- 318 (588)
Q Consensus 246 ~~il~~l~~~~~~~~~~~~l~~~l~~~l~~k~~LLVlDdv~~~~~~~--~~~l~~~l~~~-~~g-s~ilvTTR~~~v--- 318 (588)
.. .+. . -.++.+|||||++...... .+.+...+... ..+ .++|+||+...-
T Consensus 96 ---~~-----------------~~~-~-~~~~~vliiDe~~~~~~~~~~~~~l~~~l~~~~~~~~~~ii~~~~~~~~~~~ 153 (242)
T 3bos_A 96 ---TA-----------------LLE-G-LEQFDLICIDDVDAVAGHPLWEEAIFDLYNRVAEQKRGSLIVSASASPMEAG 153 (242)
T ss_dssp ---GG-----------------GGT-T-GGGSSEEEEETGGGGTTCHHHHHHHHHHHHHHHHHCSCEEEEEESSCTTTTT
T ss_pred ---HH-----------------HHH-h-ccCCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCCeEEEEcCCCHHHHH
Confidence 00 000 0 1356799999997643322 23333322211 112 247777764321
Q ss_pred ------hhhccccceeeCCCCCHHHHHHHHHHhhcCCCCCCCChhHHHHHHHHHHHhCCCchHHHHhhh
Q 007817 319 ------ASMMGSVEHYNLKLLSDEYCWSVFVKHAFERRDAGAHQFSKLFRKKIVAKCGGLPLAVSTLGG 381 (588)
Q Consensus 319 ------~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~i~~~I~~~c~GlPLai~~~~~ 381 (588)
...+.....+++.+++.++..+++...+...+. .. ..+....|++.++|.+-.+..+..
T Consensus 154 ~~~~~l~~r~~~~~~i~l~~~~~~~~~~~l~~~~~~~~~-~~---~~~~~~~l~~~~~g~~r~l~~~l~ 218 (242)
T 3bos_A 154 FVLPDLVSRMHWGLTYQLQPMMDDEKLAALQRRAAMRGL-QL---PEDVGRFLLNRMARDLRTLFDVLD 218 (242)
T ss_dssp CCCHHHHHHHHHSEEEECCCCCGGGHHHHHHHHHHHTTC-CC---CHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred HhhhhhhhHhhcCceEEeCCCCHHHHHHHHHHHHHHcCC-CC---CHHHHHHHHHHccCCHHHHHHHHH
Confidence 111112267999999999999999887642221 11 234456788999998877665443
No 25
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=98.58 E-value=6.8e-07 Score=91.76 Aligned_cols=199 Identities=14% Similarity=0.106 Sum_probs=109.2
Q ss_pred CceeechhhHHH---HHHHHhcCCCCCCCCeEEEEEEccCCCcHHHHHHHHHcccccccccccEEEEEEe----CCcccH
Q 007817 169 RAVYGRDEDKAR---MLEMVLSDDPTTDANFCVIPIVGMAGAGKTMLAREVYNDRAVQNFKFDVKAWVSV----SDDFDV 241 (588)
Q Consensus 169 ~~~vGR~~e~~~---l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~wv~v----~~~~~~ 241 (588)
..++|++..++. +.+.+.... ...+.+.|+|++|+|||+||+.+++...... .| +.++. +.....
T Consensus 44 ~~ivG~~~~~~~l~~l~~~~~~~~----~~~~~vLl~GppGtGKT~la~~la~~l~~~~-~~---~~~~~~~~~~~~~~~ 115 (368)
T 3uk6_A 44 QGMVGQLAARRAAGVVLEMIREGK----IAGRAVLIAGQPGTGKTAIAMGMAQALGPDT-PF---TAIAGSEIFSLEMSK 115 (368)
T ss_dssp TTEESCHHHHHHHHHHHHHHHTTC----CTTCEEEEEESTTSSHHHHHHHHHHHHCSSC-CE---EEEEGGGGSCSSSCH
T ss_pred hhccChHHHHHHHHHHHHHHHcCC----CCCCEEEEECCCCCCHHHHHHHHHHHhcccC-Cc---ccccchhhhhcccch
Confidence 469999988766 455554432 1236889999999999999999998764321 11 12221 112233
Q ss_pred HHHHHHHHHHhcC---------------------CCC-------C--CCCHHHHHHHHHHHh-----cCC----ceeEEe
Q 007817 242 LRISRALLESITS---------------------TNC-------D--FKTLNEVQVKLRIIV-----DGK----KFLLVL 282 (588)
Q Consensus 242 ~~~~~~il~~l~~---------------------~~~-------~--~~~~~~l~~~l~~~l-----~~k----~~LLVl 282 (588)
...+.+.+....+ ... . ......+...+.... .++ +.+|+|
T Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~vl~I 195 (368)
T 3uk6_A 116 TEALTQAFRRSIGVRIKAGAVHTVSLHEIDVINSRTQGFLALFSGDTGEIKSEVREQINAKVAEWREEGKAEIIPGVLFI 195 (368)
T ss_dssp HHHHHHHHHHSBEECC------CEEHHHHHHHTC----CCSCC-------CHHHHHHHHHHHHHHHHHTC---CBCEEEE
T ss_pred hHHHHHHHHHHHHHHhhhhccccccHhhhhhhhcccccchhhccCcccccHHHHHHHHHHHHHHhhhhccccccCceEEE
Confidence 3333333332110 000 0 000122222222211 233 459999
Q ss_pred ccccccChhHHHHhhcccCCCCCCcEEEEeecc------------h-hhhh-hccccceeeCCCCCHHHHHHHHHHhhcC
Q 007817 283 DDVWNENYNLWEILKAPFMAGARNSKIIVTTCH------------S-NVAS-MMGSVEHYNLKLLSDEYCWSVFVKHAFE 348 (588)
Q Consensus 283 Ddv~~~~~~~~~~l~~~l~~~~~gs~ilvTTR~------------~-~v~~-~~~~~~~~~l~~L~~~ea~~Lf~~~a~~ 348 (588)
|++...+....+.+...+...... .++++|.. . .+.. .......+.+.+++.++..+++...+..
T Consensus 196 DEi~~l~~~~~~~L~~~le~~~~~-~~ii~t~~~~~~i~~t~~~~~~~l~~~l~sR~~~i~~~~~~~~e~~~il~~~~~~ 274 (368)
T 3uk6_A 196 DEVHMLDIESFSFLNRALESDMAP-VLIMATNRGITRIRGTSYQSPHGIPIDLLDRLLIVSTTPYSEKDTKQILRIRCEE 274 (368)
T ss_dssp ESGGGSBHHHHHHHHHHTTCTTCC-EEEEEESCSEEECBTSSCEEETTCCHHHHTTEEEEEECCCCHHHHHHHHHHHHHH
T ss_pred hhccccChHHHHHHHHHhhCcCCC-eeeeecccceeeeeccCCCCcccCCHHHHhhccEEEecCCCHHHHHHHHHHHHHH
Confidence 999887766777776666544333 34444431 1 1111 1122345899999999999999987643
Q ss_pred CCCCCCChhHHHHHHHHHHHhC-CCchHHHHhh
Q 007817 349 RRDAGAHQFSKLFRKKIVAKCG-GLPLAVSTLG 380 (588)
Q Consensus 349 ~~~~~~~~~~~~i~~~I~~~c~-GlPLai~~~~ 380 (588)
... . ...+....|++.+. |.|-.+..+.
T Consensus 275 ~~~-~---~~~~~l~~l~~~~~~G~~r~~~~ll 303 (368)
T 3uk6_A 275 EDV-E---MSEDAYTVLTRIGLETSLRYAIQLI 303 (368)
T ss_dssp TTC-C---BCHHHHHHHHHHHHHSCHHHHHHHH
T ss_pred cCC-C---CCHHHHHHHHHHhcCCCHHHHHHHH
Confidence 221 1 22334567888887 7776655443
No 26
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=98.50 E-value=1.3e-06 Score=91.71 Aligned_cols=164 Identities=16% Similarity=0.062 Sum_probs=96.5
Q ss_pred eEEEEEEccCCCcHHHHHHHHHcccccccccccEEEEEEeCCcccHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhcC
Q 007817 196 FCVIPIVGMAGAGKTMLAREVYNDRAVQNFKFDVKAWVSVSDDFDVLRISRALLESITSTNCDFKTLNEVQVKLRIIVDG 275 (588)
Q Consensus 196 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~il~~l~~~~~~~~~~~~l~~~l~~~l~~ 275 (588)
...+.|+|++|+||||||+.+++...... .-..+++++.. .+..++...+... ... .+...+..
T Consensus 130 ~~~lll~Gp~G~GKTtLa~aia~~l~~~~-~~~~v~~v~~~------~~~~~~~~~~~~~-----~~~----~~~~~~~~ 193 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLLQSIGNYVVQNE-PDLRVMYITSE------KFLNDLVDSMKEG-----KLN----EFREKYRK 193 (440)
T ss_dssp SCCEEEECSSSSSHHHHHHHHHHHHHHHC-CSSCEEEEEHH------HHHHHHHHHHHTT-----CHH----HHHHHHTT
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHhC-CCCeEEEeeHH------HHHHHHHHHHHcc-----cHH----HHHHHhcC
Confidence 56789999999999999999998653321 01123455443 2344444444321 111 23333344
Q ss_pred CceeEEeccccccCh--hHHHHhhcccCC-CCCCcEEEEeecchhh---------hhhccccceeeCCCCCHHHHHHHHH
Q 007817 276 KKFLLVLDDVWNENY--NLWEILKAPFMA-GARNSKIIVTTCHSNV---------ASMMGSVEHYNLKLLSDEYCWSVFV 343 (588)
Q Consensus 276 k~~LLVlDdv~~~~~--~~~~~l~~~l~~-~~~gs~ilvTTR~~~v---------~~~~~~~~~~~l~~L~~~ea~~Lf~ 343 (588)
++-+|+|||++.... ...+.+...+.. ...|..||+||.+... ...+.....+.+++++.++-..++.
T Consensus 194 ~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~~~~~l~~l~~~L~sR~~~g~~i~l~~p~~e~r~~iL~ 273 (440)
T 2z4s_A 194 KVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDEETRKSIAR 273 (440)
T ss_dssp TCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESSCGGGCSSCCHHHHHHHHSSBCCBCCCCCHHHHHHHHH
T ss_pred CCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECCCHHHHHHHHHHHHhhccCCeEEEeCCCCHHHHHHHHH
Confidence 678999999975432 223333333321 2346788888876321 1112233578999999999999998
Q ss_pred HhhcCCCCCCCChhHHHHHHHHHHHhCCCchHHHHh
Q 007817 344 KHAFERRDAGAHQFSKLFRKKIVAKCGGLPLAVSTL 379 (588)
Q Consensus 344 ~~a~~~~~~~~~~~~~~i~~~I~~~c~GlPLai~~~ 379 (588)
+.+...+. ..++ +....|++.++|.+-.+..+
T Consensus 274 ~~~~~~~~-~i~~---e~l~~la~~~~gn~R~l~~~ 305 (440)
T 2z4s_A 274 KMLEIEHG-ELPE---EVLNFVAENVDDNLRRLRGA 305 (440)
T ss_dssp HHHHHHTC-CCCT---THHHHHHHHCCSCHHHHHHH
T ss_pred HHHHHcCC-CCCH---HHHHHHHHhcCCCHHHHHHH
Confidence 87642221 1122 22456888899988765443
No 27
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=98.50 E-value=2.3e-06 Score=84.42 Aligned_cols=186 Identities=13% Similarity=0.069 Sum_probs=102.2
Q ss_pred CCceeechhhHHHHHHHHhcCCCC-------CCCCeEEEEEEccCCCcHHHHHHHHHcccccccccccEEEEEEeCCccc
Q 007817 168 ERAVYGRDEDKARMLEMVLSDDPT-------TDANFCVIPIVGMAGAGKTMLAREVYNDRAVQNFKFDVKAWVSVSDDFD 240 (588)
Q Consensus 168 ~~~~vGR~~e~~~l~~~L~~~~~~-------~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~wv~v~~~~~ 240 (588)
-..++|.+..+++|.+.+...... +......+.|+|++|+|||+||+.+++.... . .+.++.+.-.
T Consensus 16 ~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~~~~~---~---~~~v~~~~~~- 88 (285)
T 3h4m_A 16 YEDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATETNA---T---FIRVVGSELV- 88 (285)
T ss_dssp GGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHHHTTC---E---EEEEEGGGGC-
T ss_pred HHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHhCC---C---EEEEehHHHH-
Confidence 456899999999998887432000 0013356899999999999999999986432 1 1223322110
Q ss_pred HHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhcCCceeEEecccccc-----------ChhHHHHh---hcccC--CCC
Q 007817 241 VLRISRALLESITSTNCDFKTLNEVQVKLRIIVDGKKFLLVLDDVWNE-----------NYNLWEIL---KAPFM--AGA 304 (588)
Q Consensus 241 ~~~~~~~il~~l~~~~~~~~~~~~l~~~l~~~l~~k~~LLVlDdv~~~-----------~~~~~~~l---~~~l~--~~~ 304 (588)
... .......+...+......++.+|+|||++.. +......+ ...+. ...
T Consensus 89 -------------~~~-~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~ 154 (285)
T 3h4m_A 89 -------------KKF-IGEGASLVKDIFKLAKEKAPSIIFIDEIDAIAAKRTDALTGGDREVQRTLMQLLAEMDGFDAR 154 (285)
T ss_dssp -------------CCS-TTHHHHHHHHHHHHHHHTCSEEEEEETTHHHHBCCSSSCCGGGGHHHHHHHHHHHHHHTTCSS
T ss_pred -------------Hhc-cchHHHHHHHHHHHHHHcCCeEEEEECHHHhcccCccccCCccHHHHHHHHHHHHHhhCCCCC
Confidence 000 0001111222233333456789999999542 11111222 22221 122
Q ss_pred CCcEEEEeecchhhhhh--c---cccceeeCCCCCHHHHHHHHHHhhcCCCCCCCChhHHHHHHHHHHHhCC-CchHHHH
Q 007817 305 RNSKIIVTTCHSNVASM--M---GSVEHYNLKLLSDEYCWSVFVKHAFERRDAGAHQFSKLFRKKIVAKCGG-LPLAVST 378 (588)
Q Consensus 305 ~gs~ilvTTR~~~v~~~--~---~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~i~~~I~~~c~G-lPLai~~ 378 (588)
.+..||.||........ . .-...+.+...+.++..+++...+..... ..... ...|++.+.| .|-.|..
T Consensus 155 ~~~~vI~ttn~~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~-~~~~~----~~~l~~~~~g~~~~~i~~ 229 (285)
T 3h4m_A 155 GDVKIIGATNRPDILDPAILRPGRFDRIIEVPAPDEKGRLEILKIHTRKMNL-AEDVN----LEEIAKMTEGCVGAELKA 229 (285)
T ss_dssp SSEEEEEECSCGGGBCHHHHSTTSEEEEEECCCCCHHHHHHHHHHHHTTSCB-CTTCC----HHHHHHHCTTCCHHHHHH
T ss_pred CCEEEEEeCCCchhcCHHHcCCCcCCeEEEECCCCHHHHHHHHHHHHhcCCC-CCcCC----HHHHHHHcCCCCHHHHHH
Confidence 35677788865533221 1 12247899999999999999887643221 11222 2457777777 4544444
Q ss_pred h
Q 007817 379 L 379 (588)
Q Consensus 379 ~ 379 (588)
+
T Consensus 230 l 230 (285)
T 3h4m_A 230 I 230 (285)
T ss_dssp H
T ss_pred H
Confidence 3
No 28
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.49 E-value=9.8e-07 Score=90.06 Aligned_cols=198 Identities=12% Similarity=0.055 Sum_probs=108.4
Q ss_pred CceeechhhHHHHHHHH-hcCCCCCCCCeEEEEEEccCCCcHHHHHHHHHccccccc---ccccE---------------
Q 007817 169 RAVYGRDEDKARMLEMV-LSDDPTTDANFCVIPIVGMAGAGKTMLAREVYNDRAVQN---FKFDV--------------- 229 (588)
Q Consensus 169 ~~~vGR~~e~~~l~~~L-~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~---~~f~~--------------- 229 (588)
..++|.+...+.+.+++ .... ... +.|+|+.|+||||||+.+++...... ..++.
T Consensus 14 ~~~vg~~~~~~~l~~~~~~~~~-----~~~-~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~~~~~~~~~~~~~ 87 (354)
T 1sxj_E 14 NALSHNEELTNFLKSLSDQPRD-----LPH-LLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTASNRKLELNV 87 (354)
T ss_dssp GGCCSCHHHHHHHHTTTTCTTC-----CCC-EEEECSTTSSHHHHHHTHHHHHSCTTCCC------------------CC
T ss_pred HHhcCCHHHHHHHHHHHhhCCC-----CCe-EEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceeecccccccceeee
Confidence 45889999888888877 3321 223 89999999999999999887431110 01111
Q ss_pred -----EEEEEeCCcc-cHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhcCCceeEEeccccccChhHHHHhhcccCCC
Q 007817 230 -----KAWVSVSDDF-DVLRISRALLESITSTNCDFKTLNEVQVKLRIIVDGKKFLLVLDDVWNENYNLWEILKAPFMAG 303 (588)
Q Consensus 230 -----~~wv~v~~~~-~~~~~~~~il~~l~~~~~~~~~~~~l~~~l~~~l~~k~~LLVlDdv~~~~~~~~~~l~~~l~~~ 303 (588)
.+.+..+... ......++++..+..... ..... .+.. +.+++-++|||++...+....+.+...+...
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~----~~~~~-~ls~-l~~~~~vlilDE~~~L~~~~~~~L~~~le~~ 161 (354)
T 1sxj_E 88 VSSPYHLEITPSDMGNNDRIVIQELLKEVAQMEQ----VDFQD-SKDG-LAHRYKCVIINEANSLTKDAQAALRRTMEKY 161 (354)
T ss_dssp EECSSEEEECCC----CCHHHHHHHHHHHTTTTC------------------CCEEEEEECTTSSCHHHHHHHHHHHHHS
T ss_pred ecccceEEecHhhcCCcchHHHHHHHHHHHHhcc----ccccc-cccc-cCCCCeEEEEeCccccCHHHHHHHHHHHHhh
Confidence 1111111100 000012222222211110 00000 0000 2346779999999876666666666665544
Q ss_pred CCCcEEEEeecchh-hhhhc-cccceeeCCCCCHHHHHHHHHHhhcCCCCCCCChhHHHHHHHHHHHhCCCchHHHHhhh
Q 007817 304 ARNSKIIVTTCHSN-VASMM-GSVEHYNLKLLSDEYCWSVFVKHAFERRDAGAHQFSKLFRKKIVAKCGGLPLAVSTLGG 381 (588)
Q Consensus 304 ~~gs~ilvTTR~~~-v~~~~-~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~i~~~I~~~c~GlPLai~~~~~ 381 (588)
..+..+|++|.+.. +...+ .....+++.+++.++....+...+...+..... .+....|++.++|.+-.+..+..
T Consensus 162 ~~~~~~Il~t~~~~~l~~~l~sR~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~---~~~l~~i~~~~~G~~r~a~~~l~ 238 (354)
T 1sxj_E 162 SKNIRLIMVCDSMSPIIAPIKSQCLLIRCPAPSDSEISTILSDVVTNERIQLET---KDILKRIAQASNGNLRVSLLMLE 238 (354)
T ss_dssp TTTEEEEEEESCSCSSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTCEECC---SHHHHHHHHHHTTCHHHHHHHHT
T ss_pred cCCCEEEEEeCCHHHHHHHHHhhceEEecCCcCHHHHHHHHHHHHHHcCCCCCc---HHHHHHHHHHcCCCHHHHHHHHH
Confidence 45677888876542 22221 233679999999999999998876332221110 12345688999999876655543
No 29
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.48 E-value=1.1e-06 Score=94.54 Aligned_cols=197 Identities=13% Similarity=0.085 Sum_probs=108.6
Q ss_pred CceeechhhHHHHHHHHhcCC---------C--CCCCCeEEEEEEccCCCcHHHHHHHHHcccccccccccEEEEEEeCC
Q 007817 169 RAVYGRDEDKARMLEMVLSDD---------P--TTDANFCVIPIVGMAGAGKTMLAREVYNDRAVQNFKFDVKAWVSVSD 237 (588)
Q Consensus 169 ~~~vGR~~e~~~l~~~L~~~~---------~--~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~wv~v~~ 237 (588)
.+++|++..++++.+++.... . .+.+..+.+.|+|++|+||||||+.+++... + ..+.++++.
T Consensus 39 ~dliG~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~~l~-----~-~~i~in~s~ 112 (516)
T 1sxj_A 39 QQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQELG-----Y-DILEQNASD 112 (516)
T ss_dssp GGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHHTT-----C-EEEEECTTS
T ss_pred HHhcCCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHHHcC-----C-CEEEEeCCC
Confidence 568999999999999987511 0 0012346899999999999999999998652 2 234455554
Q ss_pred cccHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhcCCceeEEeccccccCh---hHHHHhhcccCCCCCCcEEEEeec
Q 007817 238 DFDVLRISRALLESITSTNCDFKTLNEVQVKLRIIVDGKKFLLVLDDVWNENY---NLWEILKAPFMAGARNSKIIVTTC 314 (588)
Q Consensus 238 ~~~~~~~~~~il~~l~~~~~~~~~~~~l~~~l~~~l~~k~~LLVlDdv~~~~~---~~~~~l~~~l~~~~~gs~ilvTTR 314 (588)
..... +....+........-..-...... .....+++.+|+||+++.... ..+..+...+... +..||+++.
T Consensus 113 ~~~~~-~~~~~i~~~~~~~~~~~~~~~~~~--~~~~~~~~~vliIDEid~l~~~~~~~l~~L~~~l~~~--~~~iIli~~ 187 (516)
T 1sxj_A 113 VRSKT-LLNAGVKNALDNMSVVGYFKHNEE--AQNLNGKHFVIIMDEVDGMSGGDRGGVGQLAQFCRKT--STPLILICN 187 (516)
T ss_dssp CCCHH-HHHHTGGGGTTBCCSTTTTTC------CCSSTTSEEEEECSGGGCCTTSTTHHHHHHHHHHHC--SSCEEEEES
T ss_pred cchHH-HHHHHHHHHhccccHHHHHhhhhh--hhhccCCCeEEEEECCCccchhhHHHHHHHHHHHHhc--CCCEEEEEc
Confidence 43332 222222221111000000000000 001235788999999965432 1233343333222 334665554
Q ss_pred chh---hhhhccccceeeCCCCCHHHHHHHHHHhhcCCCCCCCChhHHHHHHHHHHHhCCCc-hHHHHhh
Q 007817 315 HSN---VASMMGSVEHYNLKLLSDEYCWSVFVKHAFERRDAGAHQFSKLFRKKIVAKCGGLP-LAVSTLG 380 (588)
Q Consensus 315 ~~~---v~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~i~~~I~~~c~GlP-Lai~~~~ 380 (588)
... +.........+.+.+++.++..+++...+...+....+. ....|++.++|.+ -++..+.
T Consensus 188 ~~~~~~l~~l~~r~~~i~f~~~~~~~~~~~L~~i~~~~~~~i~~~----~l~~la~~s~GdiR~~i~~L~ 253 (516)
T 1sxj_A 188 ERNLPKMRPFDRVCLDIQFRRPDANSIKSRLMTIAIREKFKLDPN----VIDRLIQTTRGDIRQVINLLS 253 (516)
T ss_dssp CTTSSTTGGGTTTSEEEECCCCCHHHHHHHHHHHHHHHTCCCCTT----HHHHHHHHTTTCHHHHHHHHT
T ss_pred CCCCccchhhHhceEEEEeCCCCHHHHHHHHHHHHHHcCCCCCHH----HHHHHHHHcCCcHHHHHHHHH
Confidence 432 222122345789999999999999887664322222222 2456889999954 4455443
No 30
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=98.47 E-value=4.8e-06 Score=84.19 Aligned_cols=173 Identities=10% Similarity=0.031 Sum_probs=107.3
Q ss_pred hhhHHHHHHHHhcCCCCCCCCeEEEEEEccCCCcHHHHHHHHHccccccc-------------------ccccEEEEEEe
Q 007817 175 DEDKARMLEMVLSDDPTTDANFCVIPIVGMAGAGKTMLAREVYNDRAVQN-------------------FKFDVKAWVSV 235 (588)
Q Consensus 175 ~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~-------------------~~f~~~~wv~v 235 (588)
+...+.+.+.+.... -...+.++|++|+|||++|+.+.+...... .+++. .++..
T Consensus 8 ~~~~~~l~~~i~~~~-----~~~a~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~d~-~~~~~ 81 (334)
T 1a5t_A 8 RPDFEKLVASYQAGR-----GHHALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQLMQAGTHPDY-YTLAP 81 (334)
T ss_dssp HHHHHHHHHHHHTTC-----CCSEEEEECCTTSCHHHHHHHHHHHHTCSSCBTTBCCSCSHHHHHHHHTCCTTE-EEECC
T ss_pred HHHHHHHHHHHHcCC-----cceeEEEECCCCchHHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCCCCE-EEEec
Confidence 455667777775442 345789999999999999999987653221 01221 22222
Q ss_pred CCcccHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHh-----cCCceeEEeccccccChhHHHHhhcccCCCCCCcEEE
Q 007817 236 SDDFDVLRISRALLESITSTNCDFKTLNEVQVKLRIIV-----DGKKFLLVLDDVWNENYNLWEILKAPFMAGARNSKII 310 (588)
Q Consensus 236 ~~~~~~~~~~~~il~~l~~~~~~~~~~~~l~~~l~~~l-----~~k~~LLVlDdv~~~~~~~~~~l~~~l~~~~~gs~il 310 (588)
.. .......+++.. +.+.+ .+++-++|+|+++..+....+.+...+.....++.+|
T Consensus 82 ~~------------------~~~~~~i~~ir~-l~~~~~~~~~~~~~kvviIdead~l~~~a~naLLk~lEep~~~~~~I 142 (334)
T 1a5t_A 82 EK------------------GKNTLGVDAVRE-VTEKLNEHARLGGAKVVWVTDAALLTDAAANALLKTLEEPPAETWFF 142 (334)
T ss_dssp CT------------------TCSSBCHHHHHH-HHHHTTSCCTTSSCEEEEESCGGGBCHHHHHHHHHHHTSCCTTEEEE
T ss_pred cc------------------cCCCCCHHHHHH-HHHHHhhccccCCcEEEEECchhhcCHHHHHHHHHHhcCCCCCeEEE
Confidence 10 001112222222 22222 2567899999998877667777777776655667777
Q ss_pred Eeecchh-hhhhc-cccceeeCCCCCHHHHHHHHHHhhcCCCCCCCChhHHHHHHHHHHHhCCCchHHHHhhh
Q 007817 311 VTTCHSN-VASMM-GSVEHYNLKLLSDEYCWSVFVKHAFERRDAGAHQFSKLFRKKIVAKCGGLPLAVSTLGG 381 (588)
Q Consensus 311 vTTR~~~-v~~~~-~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~i~~~I~~~c~GlPLai~~~~~ 381 (588)
++|.+.. +...+ .....+++.+++.++..+++.+.. ..+ .+....+++.++|.|..+..+..
T Consensus 143 l~t~~~~~l~~ti~SRc~~~~~~~~~~~~~~~~L~~~~------~~~---~~~~~~l~~~s~G~~r~a~~~l~ 206 (334)
T 1a5t_A 143 LATREPERLLATLRSRCRLHYLAPPPEQYAVTWLSREV------TMS---QDALLAALRLSAGSPGAALALFQ 206 (334)
T ss_dssp EEESCGGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHC------CCC---HHHHHHHHHHTTTCHHHHHHTTS
T ss_pred EEeCChHhCcHHHhhcceeeeCCCCCHHHHHHHHHHhc------CCC---HHHHHHHHHHcCCCHHHHHHHhc
Confidence 7776543 22222 234679999999999999998775 111 22345689999999987765543
No 31
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=98.45 E-value=2e-06 Score=86.57 Aligned_cols=179 Identities=17% Similarity=0.083 Sum_probs=104.9
Q ss_pred CceeechhhHHHHHHHHhcCCCCCCCCeEEEEEEccCCCcHHHHHHHHHcccccccccccEEEEEEeCCcccHHHHHHHH
Q 007817 169 RAVYGRDEDKARMLEMVLSDDPTTDANFCVIPIVGMAGAGKTMLAREVYNDRAVQNFKFDVKAWVSVSDDFDVLRISRAL 248 (588)
Q Consensus 169 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i 248 (588)
.+++|.+..++.+.+++.... ...++.+.|++|+|||++|+.+++.... ..+.++.+.. .. ..++.+
T Consensus 26 ~~ivg~~~~~~~l~~~l~~~~-----~~~~~L~~G~~G~GKT~la~~la~~l~~------~~~~i~~~~~-~~-~~i~~~ 92 (324)
T 3u61_B 26 DECILPAFDKETFKSITSKGK-----IPHIILHSPSPGTGKTTVAKALCHDVNA------DMMFVNGSDC-KI-DFVRGP 92 (324)
T ss_dssp TTSCCCHHHHHHHHHHHHTTC-----CCSEEEECSSTTSSHHHHHHHHHHHTTE------EEEEEETTTC-CH-HHHHTH
T ss_pred HHHhCcHHHHHHHHHHHHcCC-----CCeEEEeeCcCCCCHHHHHHHHHHHhCC------CEEEEccccc-CH-HHHHHH
Confidence 568999999999999997543 3457888999999999999999885421 2334454332 11 111221
Q ss_pred HHHhcCCCCCCCCHHHHHHHHHHHhcCCceeEEeccccccC-hhHHHHhhcccCCCCCCcEEEEeecchhh-hhh-cccc
Q 007817 249 LESITSTNCDFKTLNEVQVKLRIIVDGKKFLLVLDDVWNEN-YNLWEILKAPFMAGARNSKIIVTTCHSNV-ASM-MGSV 325 (588)
Q Consensus 249 l~~l~~~~~~~~~~~~l~~~l~~~l~~k~~LLVlDdv~~~~-~~~~~~l~~~l~~~~~gs~ilvTTR~~~v-~~~-~~~~ 325 (588)
+....... ...+++-+|+|||++... ....+.+...+.....+..+|+||....- ... ....
T Consensus 93 ~~~~~~~~---------------~~~~~~~vliiDEi~~l~~~~~~~~L~~~le~~~~~~~iI~~~n~~~~l~~~l~sR~ 157 (324)
T 3u61_B 93 LTNFASAA---------------SFDGRQKVIVIDEFDRSGLAESQRHLRSFMEAYSSNCSIIITANNIDGIIKPLQSRC 157 (324)
T ss_dssp HHHHHHBC---------------CCSSCEEEEEEESCCCGGGHHHHHHHHHHHHHHGGGCEEEEEESSGGGSCTTHHHHS
T ss_pred HHHHHhhc---------------ccCCCCeEEEEECCcccCcHHHHHHHHHHHHhCCCCcEEEEEeCCccccCHHHHhhC
Confidence 11110000 012467899999997765 55555565555443346778888865432 111 1123
Q ss_pred ceeeCCCCCHHHHHHHH-------HHhhcCCCCCCCChhHHHHHHHHHHHhCCCchHHHH
Q 007817 326 EHYNLKLLSDEYCWSVF-------VKHAFERRDAGAHQFSKLFRKKIVAKCGGLPLAVST 378 (588)
Q Consensus 326 ~~~~l~~L~~~ea~~Lf-------~~~a~~~~~~~~~~~~~~i~~~I~~~c~GlPLai~~ 378 (588)
..+++.+++.++-.+++ ...+...+....+ .+....|++.++|.+-.+..
T Consensus 158 ~~i~~~~~~~~e~~~il~~~~~~l~~~~~~~~~~~~~---~~~~~~l~~~~~gd~R~a~~ 214 (324)
T 3u61_B 158 RVITFGQPTDEDKIEMMKQMIRRLTEICKHEGIAIAD---MKVVAALVKKNFPDFRKTIG 214 (324)
T ss_dssp EEEECCCCCHHHHHHHHHHHHHHHHHHHHHHTCCBSC---HHHHHHHHHHTCSCTTHHHH
T ss_pred cEEEeCCCCHHHHHHHHHHHHHHHHHHHHHcCCCCCc---HHHHHHHHHhCCCCHHHHHH
Confidence 57999999988843332 2222111111111 13456688889887765443
No 32
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=98.43 E-value=4.7e-06 Score=87.48 Aligned_cols=199 Identities=17% Similarity=0.165 Sum_probs=111.2
Q ss_pred CceeechhhH---HHHHHHHhcCCCCCCCCeEEEEEEccCCCcHHHHHHHHHcccccccccccEEEEEEeCCcccHHHHH
Q 007817 169 RAVYGRDEDK---ARMLEMVLSDDPTTDANFCVIPIVGMAGAGKTMLAREVYNDRAVQNFKFDVKAWVSVSDDFDVLRIS 245 (588)
Q Consensus 169 ~~~vGR~~e~---~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~ 245 (588)
..++|.+..+ ..|...+... ....+.|+|++|+||||||+.+++.... .| .-++... ..... +
T Consensus 26 ~~ivGq~~~~~~~~~L~~~i~~~------~~~~vLL~GppGtGKTtlAr~ia~~~~~---~f---~~l~a~~-~~~~~-i 91 (447)
T 3pvs_A 26 AQYIGQQHLLAAGKPLPRAIEAG------HLHSMILWGPPGTGKTTLAEVIARYANA---DV---ERISAVT-SGVKE-I 91 (447)
T ss_dssp TTCCSCHHHHSTTSHHHHHHHHT------CCCEEEEECSTTSSHHHHHHHHHHHTTC---EE---EEEETTT-CCHHH-H
T ss_pred HHhCCcHHHHhchHHHHHHHHcC------CCcEEEEECCCCCcHHHHHHHHHHHhCC---Ce---EEEEecc-CCHHH-H
Confidence 4688988877 6777777654 3367899999999999999999986432 22 1122211 11111 1
Q ss_pred HHHHHHhcCCCCCCCCHHHHHHHHHHHhcCCceeEEeccccccChhHHHHhhcccCCCCCCcEEEE-eecchh--hhh-h
Q 007817 246 RALLESITSTNCDFKTLNEVQVKLRIIVDGKKFLLVLDDVWNENYNLWEILKAPFMAGARNSKIIV-TTCHSN--VAS-M 321 (588)
Q Consensus 246 ~~il~~l~~~~~~~~~~~~l~~~l~~~l~~k~~LLVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilv-TTR~~~--v~~-~ 321 (588)
+.++.. .......+++.+|+||+++..+....+.+...+..+ ...+|. ||.+.. +.. .
T Consensus 92 r~~~~~----------------a~~~~~~~~~~iLfIDEI~~l~~~~q~~LL~~le~~--~v~lI~att~n~~~~l~~aL 153 (447)
T 3pvs_A 92 REAIER----------------ARQNRNAGRRTILFVDEVHRFNKSQQDAFLPHIEDG--TITFIGATTENPSFELNSAL 153 (447)
T ss_dssp HHHHHH----------------HHHHHHTTCCEEEEEETTTCC------CCHHHHHTT--SCEEEEEESSCGGGSSCHHH
T ss_pred HHHHHH----------------HHHhhhcCCCcEEEEeChhhhCHHHHHHHHHHHhcC--ceEEEecCCCCcccccCHHH
Confidence 111111 011112467889999999776555555555544432 233443 444432 111 1
Q ss_pred ccccceeeCCCCCHHHHHHHHHHhhcCCCCC---CCChhHHHHHHHHHHHhCCCchHHHHhhhhc---cC-------CCC
Q 007817 322 MGSVEHYNLKLLSDEYCWSVFVKHAFERRDA---GAHQFSKLFRKKIVAKCGGLPLAVSTLGGLL---RT-------RHT 388 (588)
Q Consensus 322 ~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~---~~~~~~~~i~~~I~~~c~GlPLai~~~~~~L---~~-------~~~ 388 (588)
......+.+.+++.++...++.+.+...... .......+..+.|++.++|.+-.+..+...+ .. .-+
T Consensus 154 ~sR~~v~~l~~l~~edi~~il~~~l~~~~~~~~~~~~~i~~~al~~L~~~~~Gd~R~lln~Le~a~~~a~~~~~~~~~It 233 (447)
T 3pvs_A 154 LSRARVYLLKSLSTEDIEQVLTQAMEDKTRGYGGQDIVLPDETRRAIAELVNGDARRALNTLEMMADMAEVDDSGKRVLK 233 (447)
T ss_dssp HTTEEEEECCCCCHHHHHHHHHHHHHCTTTSSTTSSEECCHHHHHHHHHHHCSCHHHHHHHHHHHHHHSCBCTTSCEECC
T ss_pred hCceeEEeeCCcCHHHHHHHHHHHHHHHhhhhccccCcCCHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccccCCCCccC
Confidence 2234578999999999999998876431110 1111233445678888999887655443322 11 135
Q ss_pred HHHHHHHHhcc
Q 007817 389 EDAWEEIVSSK 399 (588)
Q Consensus 389 ~~~w~~~~~~~ 399 (588)
.+....++...
T Consensus 234 ~e~v~~~l~~~ 244 (447)
T 3pvs_A 234 PELLTEIAGER 244 (447)
T ss_dssp HHHHHHHHTCC
T ss_pred HHHHHHHHhhh
Confidence 66666666543
No 33
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=98.39 E-value=2.5e-06 Score=85.23 Aligned_cols=161 Identities=16% Similarity=0.098 Sum_probs=91.1
Q ss_pred ceeechhhHHHHHHHHhcCC---------CCCCCCeEEEEEEccCCCcHHHHHHHHHcccccccccccEEEEEEeCCccc
Q 007817 170 AVYGRDEDKARMLEMVLSDD---------PTTDANFCVIPIVGMAGAGKTMLAREVYNDRAVQNFKFDVKAWVSVSDDFD 240 (588)
Q Consensus 170 ~~vGR~~e~~~l~~~L~~~~---------~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~wv~v~~~~~ 240 (588)
.++|.+..++.|.+++.... .........+.|+|++|+|||+||+.+++...... .....-++.++..
T Consensus 32 ~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~-~~~~~~~~~~~~~-- 108 (309)
T 3syl_A 32 ELIGLKPVKDRIRETAALLLVERARQKLGLAHETPTLHMSFTGNPGTGKTTVALKMAGLLHRLG-YVRKGHLVSVTRD-- 108 (309)
T ss_dssp HSSSCHHHHHHHHHHHHHHHHHHHHHHHTCCSSCCCCEEEEEECTTSSHHHHHHHHHHHHHHTT-SSSSCCEEEECGG--
T ss_pred HccChHHHHHHHHHHHHHHHhHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHhcC-CcCCCcEEEEcHH--
Confidence 47788888777776654210 00112445789999999999999998887654322 1111112333211
Q ss_pred HHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhcCCceeEEecccccc---------ChhHHHHhhcccCCCCCCcEEEE
Q 007817 241 VLRISRALLESITSTNCDFKTLNEVQVKLRIIVDGKKFLLVLDDVWNE---------NYNLWEILKAPFMAGARNSKIIV 311 (588)
Q Consensus 241 ~~~~~~~il~~l~~~~~~~~~~~~l~~~l~~~l~~k~~LLVlDdv~~~---------~~~~~~~l~~~l~~~~~gs~ilv 311 (588)
.+.... ...........+... ++-+|+||+++.. .......+...+.....+..||+
T Consensus 109 ----------~l~~~~-~g~~~~~~~~~~~~~---~~~vl~iDEid~l~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~i~ 174 (309)
T 3syl_A 109 ----------DLVGQY-IGHTAPKTKEVLKRA---MGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENNRDDLVVIL 174 (309)
T ss_dssp ----------GTCCSS-TTCHHHHHHHHHHHH---TTSEEEEETGGGSCCCC---CCTHHHHHHHHHHHHHCTTTCEEEE
T ss_pred ----------Hhhhhc-ccccHHHHHHHHHhc---CCCEEEEEChhhhccCCCcccccHHHHHHHHHHHhcCCCCEEEEE
Confidence 011000 001111122222221 3569999999733 44455666666655555677888
Q ss_pred eecchhhhhh-------cc-ccceeeCCCCCHHHHHHHHHHhhc
Q 007817 312 TTCHSNVASM-------MG-SVEHYNLKLLSDEYCWSVFVKHAF 347 (588)
Q Consensus 312 TTR~~~v~~~-------~~-~~~~~~l~~L~~~ea~~Lf~~~a~ 347 (588)
||........ .. ....+.+++++.++-..++...+.
T Consensus 175 ~~~~~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~ 218 (309)
T 3syl_A 175 AGYADRMENFFQSNPGFRSRIAHHIEFPDYSDEELFEIAGHMLD 218 (309)
T ss_dssp EECHHHHHHHHHHSTTHHHHEEEEEEECCCCHHHHHHHHHHHHH
T ss_pred eCChHHHHHHHhhCHHHHHhCCeEEEcCCcCHHHHHHHHHHHHH
Confidence 8865432111 11 226799999999999999988764
No 34
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=98.39 E-value=5.6e-06 Score=80.39 Aligned_cols=187 Identities=15% Similarity=0.142 Sum_probs=98.3
Q ss_pred CceeechhhHHHHHHHHh---cCCC---CCCCCeEEEEEEccCCCcHHHHHHHHHcccccccccccEEEEEEeCCcccHH
Q 007817 169 RAVYGRDEDKARMLEMVL---SDDP---TTDANFCVIPIVGMAGAGKTMLAREVYNDRAVQNFKFDVKAWVSVSDDFDVL 242 (588)
Q Consensus 169 ~~~vGR~~e~~~l~~~L~---~~~~---~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~wv~v~~~~~~~ 242 (588)
.+++|.+..++.+.+++. .... .+....+.+.|+|++|+|||+||+.+++.... . .+.++.+.-.+.
T Consensus 6 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~vll~G~~GtGKT~la~~la~~~~~---~---~~~~~~~~~~~~- 78 (262)
T 2qz4_A 6 KDVAGMHEAKLEVREFVDYLKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATEAQV---P---FLAMAGAEFVEV- 78 (262)
T ss_dssp TSSCSCHHHHHHHHHHHHHHHCCC------CCCCCEEEEESCTTSSHHHHHHHHHHHHTC---C---EEEEETTTTSSS-
T ss_pred HHhCCHHHHHHHHHHHHHHHHCHHHHHHcCCCCCceEEEECCCCCCHHHHHHHHHHHhCC---C---EEEechHHHHhh-
Confidence 457898887777765542 2211 01123456889999999999999999985432 1 233444321110
Q ss_pred HHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhcCCceeEEeccccccC------------h---hHHHHhhcccCC--CCC
Q 007817 243 RISRALLESITSTNCDFKTLNEVQVKLRIIVDGKKFLLVLDDVWNEN------------Y---NLWEILKAPFMA--GAR 305 (588)
Q Consensus 243 ~~~~~il~~l~~~~~~~~~~~~l~~~l~~~l~~k~~LLVlDdv~~~~------------~---~~~~~l~~~l~~--~~~ 305 (588)
. .......+...+.......+.+|+||+++... . .....+...+.. ...
T Consensus 79 -------------~-~~~~~~~~~~~~~~a~~~~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~ 144 (262)
T 2qz4_A 79 -------------I-GGLGAARVRSLFKEARARAPCIVYIDEIDAVGKKRSTTMSGFSNTEEEQTLNQLLVEMDGMGTTD 144 (262)
T ss_dssp -------------S-TTHHHHHHHHHHHHHHHTCSEEEEEECC-------------------CHHHHHHHHHHHTCCTTC
T ss_pred -------------c-cChhHHHHHHHHHHHHhcCCeEEEEeCcchhhccccccccCccchhHHHHHHHHHHHhhCcCCCC
Confidence 0 00011122222333334567899999996431 0 112222222221 123
Q ss_pred CcEEEEeecchhhhh-hc-c---ccceeeCCCCCHHHHHHHHHHhhcCCCCCCCChhHHHHHHHHHHHhCCCch-HHHHh
Q 007817 306 NSKIIVTTCHSNVAS-MM-G---SVEHYNLKLLSDEYCWSVFVKHAFERRDAGAHQFSKLFRKKIVAKCGGLPL-AVSTL 379 (588)
Q Consensus 306 gs~ilvTTR~~~v~~-~~-~---~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~i~~~I~~~c~GlPL-ai~~~ 379 (588)
+..||.||....... .+ . -...+.+...+.++-.+++...+..... ..........+++.+.|.+- .|..+
T Consensus 145 ~~~vi~~tn~~~~ld~~l~~~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~---~~~~~~~~~~l~~~~~g~~~~~l~~l 221 (262)
T 2qz4_A 145 HVIVLASTNRADILDGALMRPGRLDRHVFIDLPTLQERREIFEQHLKSLKL---TQSSTFYSQRLAELTPGFSGADIANI 221 (262)
T ss_dssp CEEEEEEESCGGGGGSGGGSTTSCCEEEECCSCCHHHHHHHHHHHHHHTTC---CBTHHHHHHHHHHTCTTCCHHHHHHH
T ss_pred CEEEEecCCChhhcCHHHhcCCcCCeEEEeCCcCHHHHHHHHHHHHHhCCC---CcchhhHHHHHHHHCCCCCHHHHHHH
Confidence 556667775543211 11 1 2256889999999999999887643221 11112223568888888754 44444
No 35
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=98.32 E-value=9.6e-06 Score=79.39 Aligned_cols=171 Identities=15% Similarity=0.159 Sum_probs=91.3
Q ss_pred ceeechhhHHHHHH-------HHhcCCCCCCCCeEEEEEEccCCCcHHHHHHHHHcccccccccccEEEEEEeCCcccHH
Q 007817 170 AVYGRDEDKARMLE-------MVLSDDPTTDANFCVIPIVGMAGAGKTMLAREVYNDRAVQNFKFDVKAWVSVSDDFDVL 242 (588)
Q Consensus 170 ~~vGR~~e~~~l~~-------~L~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~wv~v~~~~~~~ 242 (588)
.++|.....+++.. .+.... ......+.|+|++|+|||+||+.+++... ...+ .++.+..
T Consensus 34 ~~i~~~~~~~~i~~~~~~l~~~l~~~~---~~~~~~vLl~G~~GtGKT~la~~ia~~~~-----~~~~-~i~~~~~---- 100 (272)
T 1d2n_A 34 GIIKWGDPVTRVLDDGELLVQQTKNSD---RTPLVSVLLEGPPHSGKTALAAKIAEESN-----FPFI-KICSPDK---- 100 (272)
T ss_dssp CCCCCSHHHHHHHHHHHHHHHHHHHCS---SCSEEEEEEECSTTSSHHHHHHHHHHHHT-----CSEE-EEECGGG----
T ss_pred CCCCccHHHHHHHHHHHHHHHHHhccC---CCCCeEEEEECCCCCcHHHHHHHHHHHhC-----CCEE-EEeCHHH----
Confidence 46777776666555 333221 24567899999999999999999998632 2211 2222211
Q ss_pred HHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhcCCceeEEecccccc----------ChhHHHHhhcccCC---CCCCcEE
Q 007817 243 RISRALLESITSTNCDFKTLNEVQVKLRIIVDGKKFLLVLDDVWNE----------NYNLWEILKAPFMA---GARNSKI 309 (588)
Q Consensus 243 ~~~~~il~~l~~~~~~~~~~~~l~~~l~~~l~~k~~LLVlDdv~~~----------~~~~~~~l~~~l~~---~~~gs~i 309 (588)
+.+.. .......+...+......++.+|+|||+... .....+.+...+.. ......|
T Consensus 101 ---------~~g~~-~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~i 170 (272)
T 1d2n_A 101 ---------MIGFS-ETAKCQAMKKIFDDAYKSQLSCVVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKAPPQGRKLLI 170 (272)
T ss_dssp ---------CTTCC-HHHHHHHHHHHHHHHHTSSEEEEEECCHHHHTTCBTTTTBCCHHHHHHHHHHTTCCCSTTCEEEE
T ss_pred ---------hcCCc-hHHHHHHHHHHHHHHHhcCCcEEEEEChhhhhccCCCChhHHHHHHHHHHHHhcCccCCCCCEEE
Confidence 00000 0000111222333333467889999998542 11222333332221 2234456
Q ss_pred EEeecchhhhhh---ccc-cceeeCCCCCH-HHHHHHHHHhhcCCCCCCCChhHHHHHHHHHHHhCCC
Q 007817 310 IVTTCHSNVASM---MGS-VEHYNLKLLSD-EYCWSVFVKHAFERRDAGAHQFSKLFRKKIVAKCGGL 372 (588)
Q Consensus 310 lvTTR~~~v~~~---~~~-~~~~~l~~L~~-~ea~~Lf~~~a~~~~~~~~~~~~~~i~~~I~~~c~Gl 372 (588)
|.||........ .+. ...+++++++. ++...++.+.. ... .+....|++.+.|.
T Consensus 171 i~ttn~~~~l~~~~l~~rf~~~i~~p~l~~r~~i~~i~~~~~------~~~---~~~~~~l~~~~~g~ 229 (272)
T 1d2n_A 171 IGTTSRKDVLQEMEMLNAFSTTIHVPNIATGEQLLEALELLG------NFK---DKERTTIAQQVKGK 229 (272)
T ss_dssp EEEESCHHHHHHTTCTTTSSEEEECCCEEEHHHHHHHHHHHT------CSC---HHHHHHHHHHHTTS
T ss_pred EEecCChhhcchhhhhcccceEEcCCCccHHHHHHHHHHhcC------CCC---HHHHHHHHHHhcCC
Confidence 777776644332 111 35688999988 66666665431 111 22355688888874
No 36
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.31 E-value=9.4e-06 Score=82.27 Aligned_cols=177 Identities=15% Similarity=0.153 Sum_probs=107.0
Q ss_pred CceeechhhHHHHHHHHhcCCCCCCCCeEEEEEEccCCCcHHHHHHHHHccccccccccc-EEEEEEeCCcccHHHHHHH
Q 007817 169 RAVYGRDEDKARMLEMVLSDDPTTDANFCVIPIVGMAGAGKTMLAREVYNDRAVQNFKFD-VKAWVSVSDDFDVLRISRA 247 (588)
Q Consensus 169 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~~f~-~~~wv~v~~~~~~~~~~~~ 247 (588)
..++|.+..++.|...+.... .+.+.++|++|+||||+|+.+++...... +. ...-++.++....
T Consensus 25 ~~~~g~~~~~~~L~~~i~~g~------~~~~ll~Gp~G~GKTtla~~la~~l~~~~--~~~~~~~~~~~~~~~~------ 90 (340)
T 1sxj_C 25 DEVYGQNEVITTVRKFVDEGK------LPHLLFYGPPGTGKTSTIVALAREIYGKN--YSNMVLELNASDDRGI------ 90 (340)
T ss_dssp GGCCSCHHHHHHHHHHHHTTC------CCCEEEECSSSSSHHHHHHHHHHHHHTTS--HHHHEEEECTTSCCSH------
T ss_pred HHhcCcHHHHHHHHHHHhcCC------CceEEEECCCCCCHHHHHHHHHHHHcCCC--ccceEEEEcCcccccH------
Confidence 357898888888888886542 22388999999999999999988643221 11 1222333322121
Q ss_pred HHHHhcCCCCCCCCHHHHHHHHHHHh------cCCceeEEeccccccChhHHHHhhcccCCCCCCcEEEEeecchh-hhh
Q 007817 248 LLESITSTNCDFKTLNEVQVKLRIIV------DGKKFLLVLDDVWNENYNLWEILKAPFMAGARNSKIIVTTCHSN-VAS 320 (588)
Q Consensus 248 il~~l~~~~~~~~~~~~l~~~l~~~l------~~k~~LLVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTTR~~~-v~~ 320 (588)
+.+...+.... .+.+-++|+|+++.......+.+...+......+.+|++|.... +..
T Consensus 91 ---------------~~ir~~i~~~~~~~~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~n~~~~i~~ 155 (340)
T 1sxj_C 91 ---------------DVVRNQIKDFASTRQIFSKGFKLIILDEADAMTNAAQNALRRVIERYTKNTRFCVLANYAHKLTP 155 (340)
T ss_dssp ---------------HHHHTHHHHHHHBCCSSSCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCH
T ss_pred ---------------HHHHHHHHHHHhhcccCCCCceEEEEeCCCCCCHHHHHHHHHHHhcCCCCeEEEEEecCccccch
Confidence 22222222211 23467899999977665566666665554445667777775432 111
Q ss_pred h-ccccceeeCCCCCHHHHHHHHHHhhcCCCCCCCChhHHHHHHHHHHHhCCCchHHHH
Q 007817 321 M-MGSVEHYNLKLLSDEYCWSVFVKHAFERRDAGAHQFSKLFRKKIVAKCGGLPLAVST 378 (588)
Q Consensus 321 ~-~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~i~~~I~~~c~GlPLai~~ 378 (588)
. ......+.+.+++.++..+.+...+-..+. ..+ ....+.|++.++|.+--+..
T Consensus 156 ~i~sR~~~~~~~~l~~~~~~~~l~~~~~~~~~-~i~---~~~~~~i~~~s~G~~r~~~~ 210 (340)
T 1sxj_C 156 ALLSQCTRFRFQPLPQEAIERRIANVLVHEKL-KLS---PNAEKALIELSNGDMRRVLN 210 (340)
T ss_dssp HHHTTSEEEECCCCCHHHHHHHHHHHHHTTTC-CBC---HHHHHHHHHHHTTCHHHHHH
T ss_pred hHHhhceeEeccCCCHHHHHHHHHHHHHHcCC-CCC---HHHHHHHHHHcCCCHHHHHH
Confidence 1 122347899999999999888876532211 111 23456788999998875433
No 37
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=98.26 E-value=1.5e-06 Score=79.52 Aligned_cols=46 Identities=22% Similarity=0.299 Sum_probs=38.9
Q ss_pred CceeechhhHHHHHHHHhcCCCCCCCCeEEEEEEccCCCcHHHHHHHHHccc
Q 007817 169 RAVYGRDEDKARMLEMVLSDDPTTDANFCVIPIVGMAGAGKTMLAREVYNDR 220 (588)
Q Consensus 169 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~ 220 (588)
..++||+.+++.+.+.+... ....+.|+|++|+|||+||+.+++..
T Consensus 22 ~~~~g~~~~~~~l~~~l~~~------~~~~vll~G~~G~GKT~la~~~~~~~ 67 (187)
T 2p65_A 22 DPVIGRDTEIRRAIQILSRR------TKNNPILLGDPGVGKTAIVEGLAIKI 67 (187)
T ss_dssp CCCCSCHHHHHHHHHHHTSS------SSCEEEEESCGGGCHHHHHHHHHHHH
T ss_pred chhhcchHHHHHHHHHHhCC------CCCceEEECCCCCCHHHHHHHHHHHH
Confidence 46899999999999998653 23467899999999999999998865
No 38
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=98.25 E-value=1.3e-06 Score=76.84 Aligned_cols=114 Identities=14% Similarity=-0.007 Sum_probs=70.4
Q ss_pred ceeechhhHHHHHHHHhcCCCCCCCCeEEEEEEccCCCcHHHHHHHHHcccccccccccEEEEEEeCCcccHHHHHHHHH
Q 007817 170 AVYGRDEDKARMLEMVLSDDPTTDANFCVIPIVGMAGAGKTMLAREVYNDRAVQNFKFDVKAWVSVSDDFDVLRISRALL 249 (588)
Q Consensus 170 ~~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~il 249 (588)
.++|+...+.++.+.+..... ...-|.|+|++|+|||++|+.+++.....+ ...+ ++++...+.
T Consensus 2 ~iiG~s~~~~~~~~~~~~~a~----~~~~vll~G~~GtGKt~lA~~i~~~~~~~~--~~~v--~~~~~~~~~-------- 65 (145)
T 3n70_A 2 ELIGRSEWINQYRRRLQQLSE----TDIAVWLYGAPGTGRMTGARYLHQFGRNAQ--GEFV--YRELTPDNA-------- 65 (145)
T ss_dssp --CCSSHHHHHHHHHHHHHTT----CCSCEEEESSTTSSHHHHHHHHHHSSTTTT--SCCE--EEECCTTTS--------
T ss_pred CceeCCHHHHHHHHHHHHHhC----CCCCEEEECCCCCCHHHHHHHHHHhCCccC--CCEE--EECCCCCcc--------
Confidence 578999999999888754321 123478999999999999999988643322 1222 555432211
Q ss_pred HHhcCCCCCCCCHHHHHHHHHHHhcCCceeEEeccccccChhHHHHhhcccCCCCCCcEEEEeecc
Q 007817 250 ESITSTNCDFKTLNEVQVKLRIIVDGKKFLLVLDDVWNENYNLWEILKAPFMAGARNSKIIVTTCH 315 (588)
Q Consensus 250 ~~l~~~~~~~~~~~~l~~~l~~~l~~k~~LLVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTTR~ 315 (588)
..... .+.. .+.-.|+||++..........+...+.......++|.||..
T Consensus 66 ----------~~~~~---~~~~---a~~g~l~ldei~~l~~~~q~~Ll~~l~~~~~~~~~I~~t~~ 115 (145)
T 3n70_A 66 ----------PQLND---FIAL---AQGGTLVLSHPEHLTREQQYHLVQLQSQEHRPFRLIGIGDT 115 (145)
T ss_dssp ----------SCHHH---HHHH---HTTSCEEEECGGGSCHHHHHHHHHHHHSSSCSSCEEEEESS
T ss_pred ----------hhhhc---HHHH---cCCcEEEEcChHHCCHHHHHHHHHHHhhcCCCEEEEEECCc
Confidence 11111 1111 13457899999877766666666666544456778888864
No 39
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=98.23 E-value=4.7e-05 Score=76.42 Aligned_cols=186 Identities=15% Similarity=0.080 Sum_probs=102.6
Q ss_pred CceeechhhHHHHHHHHhcCC------CCCCCCeEEEEEEccCCCcHHHHHHHHHcccccccccccEEEEEEeCCcccHH
Q 007817 169 RAVYGRDEDKARMLEMVLSDD------PTTDANFCVIPIVGMAGAGKTMLAREVYNDRAVQNFKFDVKAWVSVSDDFDVL 242 (588)
Q Consensus 169 ~~~vGR~~e~~~l~~~L~~~~------~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~wv~v~~~~~~~ 242 (588)
..++|.+..++.|.+++..+. .......+-+.|+|++|+|||+||+.+++.... .| +.++.+.
T Consensus 18 ~di~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~~~---~~---~~v~~~~----- 86 (322)
T 3eie_A 18 EDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEANS---TF---FSVSSSD----- 86 (322)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCGGGCCTTCCCCCEEEEECSSSSCHHHHHHHHHHHHTC---EE---EEEEHHH-----
T ss_pred HHhcChHHHHHHHHHHHHHHHhCHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHHCC---CE---EEEchHH-----
Confidence 568999999999988873110 001223467899999999999999999986422 22 2233211
Q ss_pred HHHHHHHHHhcCCCCCCCCHHHHH-HHHHHHhcCCceeEEeccccccCh-----------hHHHHhhcccC---CCCCCc
Q 007817 243 RISRALLESITSTNCDFKTLNEVQ-VKLRIIVDGKKFLLVLDDVWNENY-----------NLWEILKAPFM---AGARNS 307 (588)
Q Consensus 243 ~~~~~il~~l~~~~~~~~~~~~l~-~~l~~~l~~k~~LLVlDdv~~~~~-----------~~~~~l~~~l~---~~~~gs 307 (588)
+ .... ....+... ..+...-..++.+|+||++..... .....+...+. ....+.
T Consensus 87 -l----~~~~------~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~v 155 (322)
T 3eie_A 87 -L----VSKW------MGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQGV 155 (322)
T ss_dssp -H----HTTT------GGGHHHHHHHHHHHHHHTSSEEEEEECGGGGSCC------CCTHHHHHHHHHHHGGGGTSCCCE
T ss_pred -H----hhcc------cchHHHHHHHHHHHHHhcCCeEEEechhhhhhccCCCCcchHHHHHHHHHHHHhccccccCCce
Confidence 1 1100 01111222 222222345678999999964311 11223322222 233456
Q ss_pred EEEEeecchhhhh-hc--cccceeeCCCCCHHHHHHHHHHhhcCCCCCCCChhHHHHHHHHHHHhCC-CchHHHHhh
Q 007817 308 KIIVTTCHSNVAS-MM--GSVEHYNLKLLSDEYCWSVFVKHAFERRDAGAHQFSKLFRKKIVAKCGG-LPLAVSTLG 380 (588)
Q Consensus 308 ~ilvTTR~~~v~~-~~--~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~i~~~I~~~c~G-lPLai~~~~ 380 (588)
.||.||....... .+ .-...+.+...+.++-.+++..++..... ... ......|++.+.| .+-.|..+.
T Consensus 156 ~vi~atn~~~~ld~al~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~-~~~---~~~l~~la~~t~g~sg~di~~l~ 228 (322)
T 3eie_A 156 LVLGATNIPWQLDSAIRRRFERRIYIPLPDLAARTTMFEINVGDTPC-VLT---KEDYRTLGAMTEGYSGSDIAVVV 228 (322)
T ss_dssp EEEEEESCGGGSCHHHHHHCCEEEECCCCCHHHHHHHHHHHHTTCCC-CCC---HHHHHHHHHTTTTCCHHHHHHHH
T ss_pred EEEEecCChhhCCHHHHcccCeEEEeCCCCHHHHHHHHHHHhccCCC-CCC---HHHHHHHHHHcCCCCHHHHHHHH
Confidence 6666776543221 11 12356788999999999999988743221 111 1234568888887 444555444
No 40
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=98.23 E-value=1.5e-05 Score=80.14 Aligned_cols=169 Identities=18% Similarity=0.104 Sum_probs=93.0
Q ss_pred HHHHHHHHhcCCCCCCCCeEEEEEEccCCCcHHHHHHHHHcccccccccccEEEEEEeCCcccHHHHHHHHHHHhcCCCC
Q 007817 178 KARMLEMVLSDDPTTDANFCVIPIVGMAGAGKTMLAREVYNDRAVQNFKFDVKAWVSVSDDFDVLRISRALLESITSTNC 257 (588)
Q Consensus 178 ~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~il~~l~~~~~ 257 (588)
...+..++..+. .....+.|+|++|+||||||+.+++.....+ ...+++++. .+...+...+..
T Consensus 23 ~~~~~~~~~~~~----~~~~~lll~G~~GtGKT~la~~i~~~~~~~~---~~~~~i~~~------~~~~~~~~~~~~--- 86 (324)
T 1l8q_A 23 YEVVKEALENLG----SLYNPIFIYGSVGTGKTHLLQAAGNEAKKRG---YRVIYSSAD------DFAQAMVEHLKK--- 86 (324)
T ss_dssp HHHHHHHHHTTT----TSCSSEEEECSSSSSHHHHHHHHHHHHHHTT---CCEEEEEHH------HHHHHHHHHHHH---
T ss_pred HHHHHHHHhCcC----CCCCeEEEECCCCCcHHHHHHHHHHHHHHCC---CEEEEEEHH------HHHHHHHHHHHc---
Confidence 344555554332 1345788999999999999999998653321 123445432 233334333321
Q ss_pred CCCCHHHHHHHHHHHhcCCceeEEeccccccCh--hHHHHhhcccCC-CCCCcEEEEeecchhh---------hhhcccc
Q 007817 258 DFKTLNEVQVKLRIIVDGKKFLLVLDDVWNENY--NLWEILKAPFMA-GARNSKIIVTTCHSNV---------ASMMGSV 325 (588)
Q Consensus 258 ~~~~~~~l~~~l~~~l~~k~~LLVlDdv~~~~~--~~~~~l~~~l~~-~~~gs~ilvTTR~~~v---------~~~~~~~ 325 (588)
...... ...+ .++-+|+|||++.... ...+.+...+.. ...+..||+||..... ...+...
T Consensus 87 --~~~~~~----~~~~-~~~~vL~iDEi~~l~~~~~~~~~l~~~l~~~~~~~~~iii~~~~~~~~l~~l~~~L~sR~~~~ 159 (324)
T 1l8q_A 87 --GTINEF----RNMY-KSVDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILASDRHPQKLDGVSDRLVSRFEGG 159 (324)
T ss_dssp --TCHHHH----HHHH-HTCSEEEEECGGGGTTCHHHHHHHHHHHHHHHHTTCEEEEEESSCGGGCTTSCHHHHHHHHTS
T ss_pred --CcHHHH----HHHh-cCCCEEEEcCcccccCChHHHHHHHHHHHHHHHCCCeEEEEecCChHHHHHhhhHhhhcccCc
Confidence 111221 2222 2367999999966432 222333333221 1235678888764321 1111222
Q ss_pred ceeeCCCCCHHHHHHHHHHhhcCCCCCCCChhHHHHHHHHHHHhCCCchH
Q 007817 326 EHYNLKLLSDEYCWSVFVKHAFERRDAGAHQFSKLFRKKIVAKCGGLPLA 375 (588)
Q Consensus 326 ~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~i~~~I~~~c~GlPLa 375 (588)
..+++.+ +.++...++...+...+. ..+ .+....|++.+ |.+-.
T Consensus 160 ~~i~l~~-~~~e~~~il~~~~~~~~~-~l~---~~~l~~l~~~~-g~~r~ 203 (324)
T 1l8q_A 160 ILVEIEL-DNKTRFKIIKEKLKEFNL-ELR---KEVIDYLLENT-KNVRE 203 (324)
T ss_dssp EEEECCC-CHHHHHHHHHHHHHHTTC-CCC---HHHHHHHHHHC-SSHHH
T ss_pred eEEEeCC-CHHHHHHHHHHHHHhcCC-CCC---HHHHHHHHHhC-CCHHH
Confidence 5689999 999999999887743222 122 23355678888 76654
No 41
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=98.21 E-value=2.7e-05 Score=79.34 Aligned_cols=187 Identities=15% Similarity=0.076 Sum_probs=100.9
Q ss_pred CceeechhhHHHHHHHHhcC----C--CCCCCCeEEEEEEccCCCcHHHHHHHHHcccccccccccEEEEEEeCCcccHH
Q 007817 169 RAVYGRDEDKARMLEMVLSD----D--PTTDANFCVIPIVGMAGAGKTMLAREVYNDRAVQNFKFDVKAWVSVSDDFDVL 242 (588)
Q Consensus 169 ~~~vGR~~e~~~l~~~L~~~----~--~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~wv~v~~~~~~~ 242 (588)
..++|.+..++.|.+.+..+ . .......+-+.|+|++|+|||+||+.+++.... .| +.++.+
T Consensus 51 ~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~~~---~~---~~v~~~------ 118 (355)
T 2qp9_X 51 EDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEANS---TF---FSVSSS------ 118 (355)
T ss_dssp GGSCCGGGHHHHHHHHTHHHHHCGGGGCSSCCCCCCEEEECSTTSCHHHHHHHHHHHHTC---EE---EEEEHH------
T ss_pred HHhCCHHHHHHHHHHHHHHHHhCHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHhCC---CE---EEeeHH------
Confidence 46899999999998877321 0 001123356889999999999999999986532 11 222222
Q ss_pred HHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhcCCceeEEeccccccChh-----------HHHHhhcccC---CCCCCcE
Q 007817 243 RISRALLESITSTNCDFKTLNEVQVKLRIIVDGKKFLLVLDDVWNENYN-----------LWEILKAPFM---AGARNSK 308 (588)
Q Consensus 243 ~~~~~il~~l~~~~~~~~~~~~l~~~l~~~l~~k~~LLVlDdv~~~~~~-----------~~~~l~~~l~---~~~~gs~ 308 (588)
++ .... .......+...+...-..++.+|+||++...... ....+...+. ....+..
T Consensus 119 ~l----~~~~-----~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~ 189 (355)
T 2qp9_X 119 DL----VSKW-----MGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQGVL 189 (355)
T ss_dssp HH----HSCC--------CHHHHHHHHHHHHHTSSEEEEEECGGGGTC------CTHHHHHHHHHHHHHHHCC---CCEE
T ss_pred HH----hhhh-----cchHHHHHHHHHHHHHHcCCeEEEEechHhhcccCCCCcchHHHHHHHHHHHHhhcccccCCCeE
Confidence 11 1110 0111122222222233467899999999653210 1222322221 1233556
Q ss_pred EEEeecchhhhh-hc--cccceeeCCCCCHHHHHHHHHHhhcCCCCCCCChhHHHHHHHHHHHhCCC-chHHHHhh
Q 007817 309 IIVTTCHSNVAS-MM--GSVEHYNLKLLSDEYCWSVFVKHAFERRDAGAHQFSKLFRKKIVAKCGGL-PLAVSTLG 380 (588)
Q Consensus 309 ilvTTR~~~v~~-~~--~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~i~~~I~~~c~Gl-PLai~~~~ 380 (588)
||.||....... .+ .-...+.+...+.++-.+++..+...... ... ......|++.+.|. |-.|..+.
T Consensus 190 vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~-~~~---~~~l~~la~~t~G~sg~dl~~l~ 261 (355)
T 2qp9_X 190 VLGATNIPWQLDSAIRRRFERRIYIPLPDLAARTTMFEINVGDTPS-VLT---KEDYRTLGAMTEGYSGSDIAVVV 261 (355)
T ss_dssp EEEEESCGGGSCHHHHHTCCEEEECCCCCHHHHHHHHHHHHTTSCB-CCC---HHHHHHHHHHTTTCCHHHHHHHH
T ss_pred EEeecCCcccCCHHHHcccCEEEEeCCcCHHHHHHHHHHHHhhCCC-CCC---HHHHHHHHHHcCCCCHHHHHHHH
Confidence 666775542211 11 22356789999999999999887643211 111 22345688888884 44455444
No 42
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=98.17 E-value=7.8e-05 Score=74.79 Aligned_cols=189 Identities=15% Similarity=0.092 Sum_probs=102.0
Q ss_pred CceeechhhHHHHHHHHhcC----C--CCCCCCeEEEEEEccCCCcHHHHHHHHHcccccccccccEEEEEEeCCcccHH
Q 007817 169 RAVYGRDEDKARMLEMVLSD----D--PTTDANFCVIPIVGMAGAGKTMLAREVYNDRAVQNFKFDVKAWVSVSDDFDVL 242 (588)
Q Consensus 169 ~~~vGR~~e~~~l~~~L~~~----~--~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~wv~v~~~~~~~ 242 (588)
.+++|.+..++.|.+.+..+ . .......+.+.|+|++|+|||+||+.+++..... . .+.++.+.-.
T Consensus 12 ~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~~~~--~---~~~i~~~~l~--- 83 (322)
T 1xwi_A 12 SDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEANNS--T---FFSISSSDLV--- 83 (322)
T ss_dssp GGSCSCHHHHHHHHHHHHHHHHCGGGSCTTCCCCSEEEEESSSSSCHHHHHHHHHHHTTSC--E---EEEEECCSSC---
T ss_pred HHhcCHHHHHHHHHHHHHHHHhCHHHHhCCCCCCceEEEECCCCccHHHHHHHHHHHcCCC--c---EEEEEhHHHH---
Confidence 46889998888888776321 0 0011234678899999999999999999864211 1 2223333211
Q ss_pred HHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhcCCceeEEeccccccC-------h----hHHHHhhcccC---CCCCCcE
Q 007817 243 RISRALLESITSTNCDFKTLNEVQVKLRIIVDGKKFLLVLDDVWNEN-------Y----NLWEILKAPFM---AGARNSK 308 (588)
Q Consensus 243 ~~~~~il~~l~~~~~~~~~~~~l~~~l~~~l~~k~~LLVlDdv~~~~-------~----~~~~~l~~~l~---~~~~gs~ 308 (588)
... .......+...+...-..++.+|+||+++... . .....+...+. ....+..
T Consensus 84 -----------~~~-~g~~~~~~~~lf~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~v~ 151 (322)
T 1xwi_A 84 -----------SKW-LGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDGIL 151 (322)
T ss_dssp -----------CSS-CCSCHHHHHHHHHHHHHTSSEEEEEETTTGGGCCSSSCCTTHHHHHHHHHHHHHHCSSSCCTTEE
T ss_pred -----------hhh-hhHHHHHHHHHHHHHHhcCCcEEEeecHHHhccccccccchHHHHHHHHHHHHHhcccccCCCEE
Confidence 000 01112222222222334678899999996431 0 11122222221 1234555
Q ss_pred EEEeecchhhhh-hc--cccceeeCCCCCHHHHHHHHHHhhcCCCCCCCChhHHHHHHHHHHHhCCC-chHHHHhhh
Q 007817 309 IIVTTCHSNVAS-MM--GSVEHYNLKLLSDEYCWSVFVKHAFERRDAGAHQFSKLFRKKIVAKCGGL-PLAVSTLGG 381 (588)
Q Consensus 309 ilvTTR~~~v~~-~~--~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~i~~~I~~~c~Gl-PLai~~~~~ 381 (588)
||.||....... .+ .-...+.+...+.++-.+++..+...... ... ......|++.+.|. +-.|..+..
T Consensus 152 vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~-~l~---~~~l~~la~~t~G~sgadl~~l~~ 224 (322)
T 1xwi_A 152 VLGATNIPWVLDSAIRRRFEKRIYIPLPEPHARAAMFKLHLGTTQN-SLT---EADFRELGRKTDGYSGADISIIVR 224 (322)
T ss_dssp EEEEESCTTTSCHHHHHTCCEEEECCCCCHHHHHHHHHHHHTTCCB-CCC---HHHHHHHHHTCTTCCHHHHHHHHH
T ss_pred EEEecCCcccCCHHHHhhcCeEEEeCCcCHHHHHHHHHHHHhcCCC-CCC---HHHHHHHHHHcCCCCHHHHHHHHH
Confidence 666665442211 11 12356888999999999999887632211 111 22345688888886 444555443
No 43
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=98.15 E-value=9.7e-05 Score=73.10 Aligned_cols=186 Identities=13% Similarity=0.087 Sum_probs=100.3
Q ss_pred CceeechhhHHHHHHHHhcCCC------CCCCCeEEEEEEccCCCcHHHHHHHHHcccccccccccEEEEEEeCCcccHH
Q 007817 169 RAVYGRDEDKARMLEMVLSDDP------TTDANFCVIPIVGMAGAGKTMLAREVYNDRAVQNFKFDVKAWVSVSDDFDVL 242 (588)
Q Consensus 169 ~~~vGR~~e~~~l~~~L~~~~~------~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~wv~v~~~~~~~ 242 (588)
..++|.+..++.+.+++..+.. ........+.|+|++|+|||+||+.+++.... . .+.++.+.-..
T Consensus 21 ~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~la~~~~~---~---~~~i~~~~l~~-- 92 (297)
T 3b9p_A 21 TDIAGQDVAKQALQEMVILPSVRPELFTGLRAPAKGLLLFGPPGNGKTLLARAVATECSA---T---FLNISAASLTS-- 92 (297)
T ss_dssp GGSCCCHHHHHHHHHHTHHHHHCGGGSCGGGCCCSEEEEESSSSSCHHHHHHHHHHHTTC---E---EEEEESTTTSS--
T ss_pred HHhCChHHHHHHHHHHHHhhhhCHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHhCC---C---eEEeeHHHHhh--
Confidence 4689999999999888743100 00112467899999999999999999985421 1 22344332110
Q ss_pred HHHHHHHHHhcCCCCCCCCHHHHHH-HHHHHhcCCceeEEeccccccC-----------hhHHHHhhcc---cCCC--CC
Q 007817 243 RISRALLESITSTNCDFKTLNEVQV-KLRIIVDGKKFLLVLDDVWNEN-----------YNLWEILKAP---FMAG--AR 305 (588)
Q Consensus 243 ~~~~~il~~l~~~~~~~~~~~~l~~-~l~~~l~~k~~LLVlDdv~~~~-----------~~~~~~l~~~---l~~~--~~ 305 (588)
. .......... .+......++.+|+||++.... ......+... ++.. ..
T Consensus 93 ------------~--~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~ 158 (297)
T 3b9p_A 93 ------------K--YVGDGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNPDGD 158 (297)
T ss_dssp ------------S--SCSCHHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC------
T ss_pred ------------c--ccchHHHHHHHHHHHHHHcCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhcccccCCCC
Confidence 0 0111222222 2222334577899999995421 1111112211 1111 13
Q ss_pred CcEEEEeecchhhhh-hc--cccceeeCCCCCHHHHHHHHHHhhcCCCCCCCChhHHHHHHHHHHHhCCCch-HHHHhh
Q 007817 306 NSKIIVTTCHSNVAS-MM--GSVEHYNLKLLSDEYCWSVFVKHAFERRDAGAHQFSKLFRKKIVAKCGGLPL-AVSTLG 380 (588)
Q Consensus 306 gs~ilvTTR~~~v~~-~~--~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~i~~~I~~~c~GlPL-ai~~~~ 380 (588)
+..||.||....... .+ .....+.+...+.++-..++...+..... ... ......|++.+.|.+- ++..+.
T Consensus 159 ~v~vi~~tn~~~~l~~~l~~R~~~~i~~~~p~~~~r~~il~~~~~~~~~-~~~---~~~~~~la~~~~g~~~~~l~~l~ 233 (297)
T 3b9p_A 159 RIVVLAATNRPQELDEAALRRFTKRVYVSLPDEQTRELLLNRLLQKQGS-PLD---TEALRRLAKITDGYSGSDLTALA 233 (297)
T ss_dssp CEEEEEEESCGGGBCHHHHHHCCEEEECCCCCHHHHHHHHHHHHGGGSC-CSC---HHHHHHHHHHTTTCCHHHHHHHH
T ss_pred cEEEEeecCChhhCCHHHHhhCCeEEEeCCcCHHHHHHHHHHHHHhcCC-CCC---HHHHHHHHHHcCCCCHHHHHHHH
Confidence 455666776543211 11 12246778888888888888776532211 111 2335678888988876 554443
No 44
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=98.14 E-value=4.7e-05 Score=77.60 Aligned_cols=187 Identities=12% Similarity=0.043 Sum_probs=102.2
Q ss_pred CceeechhhHHHHHHHHhcC----CCC--CCCCeEEEEEEccCCCcHHHHHHHHHcccccccccccEEEEEEeCCcccHH
Q 007817 169 RAVYGRDEDKARMLEMVLSD----DPT--TDANFCVIPIVGMAGAGKTMLAREVYNDRAVQNFKFDVKAWVSVSDDFDVL 242 (588)
Q Consensus 169 ~~~vGR~~e~~~l~~~L~~~----~~~--~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~wv~v~~~~~~~ 242 (588)
..++|.+..++.|.+.+... ... .......+.|+|++|+|||+||+.+++.... ..+.++++.-..
T Consensus 84 ~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~~~------~~~~i~~~~l~~-- 155 (357)
T 3d8b_A 84 EDIAGVEFAKATIKEIVVWPMLRPDIFTGLRGPPKGILLFGPPGTGKTLIGKCIASQSGA------TFFSISASSLTS-- 155 (357)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGSCCSEEEEESSTTSSHHHHHHHHHHHTTC------EEEEEEGGGGCC--
T ss_pred HHhCChHHHHHHHHHHHHHHhhChHhHhhccCCCceEEEECCCCCCHHHHHHHHHHHcCC------eEEEEehHHhhc--
Confidence 46899999999998887431 000 0123467899999999999999999885421 123444432111
Q ss_pred HHHHHHHHHhcCCCCCCCCHHHHHH-HHHHHhcCCceeEEeccccccC-----------hhHHHHhhcccCC----CCCC
Q 007817 243 RISRALLESITSTNCDFKTLNEVQV-KLRIIVDGKKFLLVLDDVWNEN-----------YNLWEILKAPFMA----GARN 306 (588)
Q Consensus 243 ~~~~~il~~l~~~~~~~~~~~~l~~-~l~~~l~~k~~LLVlDdv~~~~-----------~~~~~~l~~~l~~----~~~g 306 (588)
.. ......... .+...-..++.+|+||++.... ......+...+.. ...+
T Consensus 156 ------------~~--~g~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~~~ 221 (357)
T 3d8b_A 156 ------------KW--VGEGEKMVRALFAVARCQQPAVIFIDEIDSLLSQRGDGEHESSRRIKTEFLVQLDGATTSSEDR 221 (357)
T ss_dssp ------------SS--TTHHHHHHHHHHHHHHHTCSEEEEEETHHHHTBC------CHHHHHHHHHHHHHHC----CCCC
T ss_pred ------------cc--cchHHHHHHHHHHHHHhcCCeEEEEeCchhhhccCCCCcchHHHHHHHHHHHHHhcccccCCCC
Confidence 00 001111111 2222223567899999994321 0112233322221 1234
Q ss_pred cEEEEeecchhhh-hhc--cccceeeCCCCCHHHHHHHHHHhhcCCCCCCCChhHHHHHHHHHHHhCC-CchHHHHhhh
Q 007817 307 SKIIVTTCHSNVA-SMM--GSVEHYNLKLLSDEYCWSVFVKHAFERRDAGAHQFSKLFRKKIVAKCGG-LPLAVSTLGG 381 (588)
Q Consensus 307 s~ilvTTR~~~v~-~~~--~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~i~~~I~~~c~G-lPLai~~~~~ 381 (588)
..||.||...... ..+ .....+.+...+.++..+++...+..... .. .......|++.+.| .|-.|..+..
T Consensus 222 v~vI~atn~~~~l~~~l~~Rf~~~i~i~~p~~~~r~~il~~~~~~~~~-~l---~~~~l~~la~~t~G~s~~dl~~l~~ 296 (357)
T 3d8b_A 222 ILVVGATNRPQEIDEAARRRLVKRLYIPLPEASARKQIVINLMSKEQC-CL---SEEEIEQIVQQSDAFSGADMTQLCR 296 (357)
T ss_dssp EEEEEEESCGGGBCHHHHTTCCEEEECCCCCHHHHHHHHHHHHHTSCB-CC---CHHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred EEEEEecCChhhCCHHHHhhCceEEEeCCcCHHHHHHHHHHHHhhcCC-Cc---cHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 5566666543221 111 12246788999999999998877633211 11 12345678888888 5555665543
No 45
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=98.12 E-value=4e-06 Score=76.58 Aligned_cols=121 Identities=18% Similarity=0.167 Sum_probs=64.7
Q ss_pred chhhHHHHHHHHhcCCCCCCCCeEEEEEEccCCCcHHHHHHHHHcccccccccccEEEEEEeCCcccHHHHHHHHHHHhc
Q 007817 174 RDEDKARMLEMVLSDDPTTDANFCVIPIVGMAGAGKTMLAREVYNDRAVQNFKFDVKAWVSVSDDFDVLRISRALLESIT 253 (588)
Q Consensus 174 R~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~il~~l~ 253 (588)
....++.+.+++.+-.. .....+.|+|++|+||||||+.+++...... .+ .++++ +..++...+.....
T Consensus 19 ~~~~~~~~~~~~~~~~~---~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~-g~-~~~~~------~~~~~~~~~~~~~~ 87 (180)
T 3ec2_A 19 QNRALLTIRVFVHNFNP---EEGKGLTFVGSPGVGKTHLAVATLKAIYEKK-GI-RGYFF------DTKDLIFRLKHLMD 87 (180)
T ss_dssp HHHHHHHHHHHHHSCCG---GGCCEEEECCSSSSSHHHHHHHHHHHHHHHS-CC-CCCEE------EHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccc---cCCCEEEEECCCCCCHHHHHHHHHHHHHHHc-CC-eEEEE------EHHHHHHHHHHHhc
Confidence 34455555555544321 2246889999999999999999998764221 11 12233 33444444444433
Q ss_pred CCCCCCCCHHHHHHHHHHHhcCCceeEEeccccccChhHHH--HhhcccCCC-CCCcEEEEeecc
Q 007817 254 STNCDFKTLNEVQVKLRIIVDGKKFLLVLDDVWNENYNLWE--ILKAPFMAG-ARNSKIIVTTCH 315 (588)
Q Consensus 254 ~~~~~~~~~~~l~~~l~~~l~~k~~LLVlDdv~~~~~~~~~--~l~~~l~~~-~~gs~ilvTTR~ 315 (588)
.... ......+ .++-+|||||++......|. .+...+... ..|..+|+||..
T Consensus 88 ~~~~-----~~~~~~~-----~~~~llilDE~~~~~~~~~~~~~l~~ll~~~~~~~~~ii~tsn~ 142 (180)
T 3ec2_A 88 EGKD-----TKFLKTV-----LNSPVLVLDDLGSERLSDWQRELISYIITYRYNNLKSTIITTNY 142 (180)
T ss_dssp HTCC-----SHHHHHH-----HTCSEEEEETCSSSCCCHHHHHHHHHHHHHHHHTTCEEEEECCC
T ss_pred CchH-----HHHHHHh-----cCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHHHcCCCEEEEcCC
Confidence 2111 1222222 24679999999742222332 232222211 246778888854
No 46
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=98.09 E-value=2.8e-05 Score=77.25 Aligned_cols=148 Identities=8% Similarity=-0.006 Sum_probs=94.5
Q ss_pred chhhHHHHHHHHhcCCCCCCCCeEEEEEEccCCCcHHHHHHHHHcccccc-cccccEEEEEEeCC-cccHHHHHHHHHHH
Q 007817 174 RDEDKARMLEMVLSDDPTTDANFCVIPIVGMAGAGKTMLAREVYNDRAVQ-NFKFDVKAWVSVSD-DFDVLRISRALLES 251 (588)
Q Consensus 174 R~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~-~~~f~~~~wv~v~~-~~~~~~~~~~il~~ 251 (588)
-++-++.|.+.+... +.+...++|++|+||||+|+.+.+..... ..+.+. .+++.++ ...+..+ +++.+.
T Consensus 2 ~~~~~~~L~~~i~~~------~~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d~-~~l~~~~~~~~id~i-r~li~~ 73 (305)
T 2gno_A 2 AKDQLETLKRIIEKS------EGISILINGEDLSYPREVSLELPEYVEKFPPKASDV-LEIDPEGENIGIDDI-RTIKDF 73 (305)
T ss_dssp --CHHHHHHHHHHTC------SSEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTE-EEECCSSSCBCHHHH-HHHHHH
T ss_pred hHHHHHHHHHHHHCC------CCcEEEEECCCCCCHHHHHHHHHHhCchhhccCCCE-EEEcCCcCCCCHHHH-HHHHHH
Confidence 345566677776543 25789999999999999999998742110 103333 4444432 2222222 334433
Q ss_pred hcCCCCCCCCHHHHHHHHHHHhcCCceeEEeccccccChhHHHHhhcccCCCCCCcEEEEeecch-hhhhhccccceeeC
Q 007817 252 ITSTNCDFKTLNEVQVKLRIIVDGKKFLLVLDDVWNENYNLWEILKAPFMAGARNSKIIVTTCHS-NVASMMGSVEHYNL 330 (588)
Q Consensus 252 l~~~~~~~~~~~~l~~~l~~~l~~k~~LLVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTTR~~-~v~~~~~~~~~~~l 330 (588)
+...+ ..+++-++|+|+++..+....+.+...+....+.+.+|++|.++ .+...+... .+++
T Consensus 74 ~~~~p----------------~~~~~kvviIdead~lt~~a~naLLk~LEep~~~t~fIl~t~~~~kl~~tI~SR-~~~f 136 (305)
T 2gno_A 74 LNYSP----------------ELYTRKYVIVHDCERMTQQAANAFLKALEEPPEYAVIVLNTRRWHYLLPTIKSR-VFRV 136 (305)
T ss_dssp HTSCC----------------SSSSSEEEEETTGGGBCHHHHHHTHHHHHSCCTTEEEEEEESCGGGSCHHHHTT-SEEE
T ss_pred Hhhcc----------------ccCCceEEEeccHHHhCHHHHHHHHHHHhCCCCCeEEEEEECChHhChHHHHce-eEeC
Confidence 32211 12456799999998887778888888777666677777776544 344444444 8999
Q ss_pred CCCCHHHHHHHHHHhh
Q 007817 331 KLLSDEYCWSVFVKHA 346 (588)
Q Consensus 331 ~~L~~~ea~~Lf~~~a 346 (588)
.++++++....+.+..
T Consensus 137 ~~l~~~~i~~~L~~~~ 152 (305)
T 2gno_A 137 VVNVPKEFRDLVKEKI 152 (305)
T ss_dssp ECCCCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHh
Confidence 9999999999998775
No 47
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=98.08 E-value=6.3e-05 Score=79.00 Aligned_cols=188 Identities=14% Similarity=0.085 Sum_probs=101.2
Q ss_pred CceeechhhHHHHHHHHhcC----CC--CCCCCeEEEEEEccCCCcHHHHHHHHHcccccccccccEEEEEEeCCcccHH
Q 007817 169 RAVYGRDEDKARMLEMVLSD----DP--TTDANFCVIPIVGMAGAGKTMLAREVYNDRAVQNFKFDVKAWVSVSDDFDVL 242 (588)
Q Consensus 169 ~~~vGR~~e~~~l~~~L~~~----~~--~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~wv~v~~~~~~~ 242 (588)
..++|.+..++.|.+.+..+ .. ......+.+.|+|++|+|||+||+.+++..... . .+.++.+.-
T Consensus 134 ~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~aia~~~~~~--~---~~~v~~~~l---- 204 (444)
T 2zan_A 134 SDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEANNS--T---FFSISSSDL---- 204 (444)
T ss_dssp GGSCSCHHHHHHHHHHHTHHHHCTTTTSGGGCCCSEEEEECSTTSSHHHHHHHHHHHCCSS--E---EEEECCC------
T ss_pred HHhcCHHHHHHHHHHHHHHHhhCHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHcCCC--C---EEEEeHHHH----
Confidence 56899999999888876311 00 001234678999999999999999999864211 1 122222211
Q ss_pred HHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhcCCceeEEeccccccC-----------hhHHHHhhcccCC---CCCCcE
Q 007817 243 RISRALLESITSTNCDFKTLNEVQVKLRIIVDGKKFLLVLDDVWNEN-----------YNLWEILKAPFMA---GARNSK 308 (588)
Q Consensus 243 ~~~~~il~~l~~~~~~~~~~~~l~~~l~~~l~~k~~LLVlDdv~~~~-----------~~~~~~l~~~l~~---~~~gs~ 308 (588)
. ....+. .......+.. ..-..++.+|+||++.... ......+...+.. ...+..
T Consensus 205 --~----~~~~g~--~~~~~~~~f~---~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~~v~ 273 (444)
T 2zan_A 205 --V----SKWLGE--SEKLVKNLFQ---LARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDGIL 273 (444)
T ss_dssp ---------------CCCTHHHHHH---HHHHSCSEEEEESCTTTTCCCSSCCCCGGGHHHHHHHHTTTTCSSCCCSSCE
T ss_pred --H----hhhcch--HHHHHHHHHH---HHHHcCCeEEEEechHhhccCCCCccccHHHHHHHHHHHHHhCcccCCCCEE
Confidence 1 111111 1122222222 2224578899999996431 1122333333322 234566
Q ss_pred EEEeecchhhhhh--c-cccceeeCCCCCHHHHHHHHHHhhcCCCCCCCChhHHHHHHHHHHHhCCC-chHHHHhh
Q 007817 309 IIVTTCHSNVASM--M-GSVEHYNLKLLSDEYCWSVFVKHAFERRDAGAHQFSKLFRKKIVAKCGGL-PLAVSTLG 380 (588)
Q Consensus 309 ilvTTR~~~v~~~--~-~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~i~~~I~~~c~Gl-PLai~~~~ 380 (588)
||.||........ . .....+.+...+.++-..+|..+........ . ......|++.+.|. +-.|..+.
T Consensus 274 vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~~l-~---~~~l~~la~~t~G~sgadl~~l~ 345 (444)
T 2zan_A 274 VLGATNIPWVLDSAIRRRFEKRIYIPLPEAHARAAMFRLHLGSTQNSL-T---EADFQELGRKTDGYSGADISIIV 345 (444)
T ss_dssp EEEEESCGGGSCHHHHTTCCEEEECCCCCHHHHHHHHHHHHTTSCEEC-C---HHHHHHHHHHTTTCCHHHHHHHH
T ss_pred EEecCCCccccCHHHHhhcceEEEeCCcCHHHHHHHHHHHHhcCCCCC-C---HHHHHHHHHHcCCCCHHHHHHHH
Confidence 7767755432211 1 1224678888888988899888763221111 1 12345688888884 44454443
No 48
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=98.07 E-value=6.9e-06 Score=93.76 Aligned_cols=155 Identities=14% Similarity=0.158 Sum_probs=81.8
Q ss_pred CceeechhhHHHHHHHHhcCCCCCCCCeEEEEEEccCCCcHHHHHHHHHcccccccc--c--ccEEEEEEeCCcccHHHH
Q 007817 169 RAVYGRDEDKARMLEMVLSDDPTTDANFCVIPIVGMAGAGKTMLAREVYNDRAVQNF--K--FDVKAWVSVSDDFDVLRI 244 (588)
Q Consensus 169 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~--~--f~~~~wv~v~~~~~~~~~ 244 (588)
..++||+.++.++.+.|.... ...+.|+|++|+|||+||+.+++....... . -...++++++.-..
T Consensus 170 d~viGr~~~i~~l~~~l~~~~------~~~vlL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~l~~---- 239 (854)
T 1qvr_A 170 DPVIGRDEEIRRVIQILLRRT------KNNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQMGSLLA---- 239 (854)
T ss_dssp CCCCSCHHHHHHHHHHHHCSS------CCCCEEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTCEEEEECC---------
T ss_pred cccCCcHHHHHHHHHHHhcCC------CCceEEEcCCCCCHHHHHHHHHHHHhcCCCchhhcCCeEEEeehHHhhc----
Confidence 458999999999999997543 234689999999999999999886522110 0 11233444322100
Q ss_pred HHHHHHHhcCCCCCCCCHHH-HHHHHHHHhc-CCceeEEeccccccC--------hhHHHHhhcccCCCCCCcEEEEeec
Q 007817 245 SRALLESITSTNCDFKTLNE-VQVKLRIIVD-GKKFLLVLDDVWNEN--------YNLWEILKAPFMAGARNSKIIVTTC 314 (588)
Q Consensus 245 ~~~il~~l~~~~~~~~~~~~-l~~~l~~~l~-~k~~LLVlDdv~~~~--------~~~~~~l~~~l~~~~~gs~ilvTTR 314 (588)
+. ........ +...+...-. +++.+|+||+++... ....+.+...+.. .+..+|.+|.
T Consensus 240 ---------g~-~~~g~~~~~l~~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~g~~~~~~~L~~~l~~--~~i~~I~at~ 307 (854)
T 1qvr_A 240 ---------GA-KYRGEFEERLKAVIQEVVQSQGEVILFIDELHTVVGAGKAEGAVDAGNMLKPALAR--GELRLIGATT 307 (854)
T ss_dssp ----------------CHHHHHHHHHHHHHTTCSSEEEEECCC-------------------HHHHHT--TCCCEEEEEC
T ss_pred ---------cC-ccchHHHHHHHHHHHHHHhcCCCeEEEEecHHHHhccCCccchHHHHHHHHHHHhC--CCeEEEEecC
Confidence 00 00112222 2222222222 468899999996532 1111122222222 2345666555
Q ss_pred chhhh-----hh-ccccceeeCCCCCHHHHHHHHHHh
Q 007817 315 HSNVA-----SM-MGSVEHYNLKLLSDEYCWSVFVKH 345 (588)
Q Consensus 315 ~~~v~-----~~-~~~~~~~~l~~L~~~ea~~Lf~~~ 345 (588)
..... .. ......+.+++++.++..+++...
T Consensus 308 ~~~~~~~~~d~aL~rRf~~i~l~~p~~~e~~~iL~~~ 344 (854)
T 1qvr_A 308 LDEYREIEKDPALERRFQPVYVDEPTVEETISILRGL 344 (854)
T ss_dssp HHHHHHHTTCTTTCSCCCCEEECCCCHHHHHHHHHHH
T ss_pred chHHhhhccCHHHHhCCceEEeCCCCHHHHHHHHHhh
Confidence 44321 11 122346899999999999998754
No 49
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=98.04 E-value=1.9e-05 Score=83.59 Aligned_cols=148 Identities=16% Similarity=0.158 Sum_probs=81.2
Q ss_pred CceeechhhHHHHHHHHhcCCCCCCCCeEEEEEEccCCCcHHHHHHHHHcccccccc--c-ccE-EEEEEeCCcccHHHH
Q 007817 169 RAVYGRDEDKARMLEMVLSDDPTTDANFCVIPIVGMAGAGKTMLAREVYNDRAVQNF--K-FDV-KAWVSVSDDFDVLRI 244 (588)
Q Consensus 169 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~--~-f~~-~~wv~v~~~~~~~~~ 244 (588)
..++||+.+++++.+.|.... ..-+.|+|++|+|||+||+.+++....... . .+. .+.++++
T Consensus 180 d~iiGr~~~i~~l~~~l~r~~------~~~~LL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~-------- 245 (468)
T 3pxg_A 180 DPVIGRSKEIQRVIEVLSRRT------KNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDMG-------- 245 (468)
T ss_dssp CCCCCCHHHHHHHHHHHHCSS------SCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC-----------
T ss_pred CCccCcHHHHHHHHHHHhccC------CCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEeeCC--------
Confidence 458999999999999997542 234579999999999999999886422110 0 011 1122222
Q ss_pred HHHHHHHhcCCCCCCCCHHHHHHHHHHHhcCCceeEEeccccccChhHHHHhhcccCCCCCCcEEEEeecchhhhh----
Q 007817 245 SRALLESITSTNCDFKTLNEVQVKLRIIVDGKKFLLVLDDVWNENYNLWEILKAPFMAGARNSKIIVTTCHSNVAS---- 320 (588)
Q Consensus 245 ~~~il~~l~~~~~~~~~~~~l~~~l~~~l~~k~~LLVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTTR~~~v~~---- 320 (588)
....+. ....... .+...-..++.+|++|. ..+..+.+...+..+ ..++|.+|.......
T Consensus 246 -----~~~~g~--~e~~~~~---~~~~~~~~~~~iLfiD~----~~~a~~~L~~~L~~g--~v~vI~at~~~e~~~~~~~ 309 (468)
T 3pxg_A 246 -----TKYRGE--FEDRLKK---VMDEIRQAGNIILFIDA----AIDASNILKPSLARG--ELQCIGATTLDEYRKYIEK 309 (468)
T ss_dssp --------------CTTHHH---HHHHHHTCCCCEEEECC------------CCCTTSS--SCEEEEECCTTTTHHHHTT
T ss_pred -----ccccch--HHHHHHH---HHHHHHhcCCeEEEEeC----chhHHHHHHHhhcCC--CEEEEecCCHHHHHHHhhc
Confidence 000000 0112222 22333345688999991 112333344444322 456666665544211
Q ss_pred --h-ccccceeeCCCCCHHHHHHHHHHhh
Q 007817 321 --M-MGSVEHYNLKLLSDEYCWSVFVKHA 346 (588)
Q Consensus 321 --~-~~~~~~~~l~~L~~~ea~~Lf~~~a 346 (588)
. ......+.+++.+.++...++....
T Consensus 310 ~~al~~Rf~~i~v~~p~~e~~~~iL~~~~ 338 (468)
T 3pxg_A 310 DAALERRFQPIQVDQPSVDESIQILQGLR 338 (468)
T ss_dssp CSHHHHSEEEEECCCCCHHHHHHHHHHTT
T ss_pred CHHHHHhCccceeCCCCHHHHHHHHHHHH
Confidence 1 1133569999999999999998765
No 50
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=98.02 E-value=0.00011 Score=72.92 Aligned_cols=181 Identities=13% Similarity=0.082 Sum_probs=98.7
Q ss_pred CceeechhhHHHHHHHHhcCCC-------CCCCCeEEEEEEccCCCcHHHHHHHHHcccccccccccEEEEEEeCCcccH
Q 007817 169 RAVYGRDEDKARMLEMVLSDDP-------TTDANFCVIPIVGMAGAGKTMLAREVYNDRAVQNFKFDVKAWVSVSDDFDV 241 (588)
Q Consensus 169 ~~~vGR~~e~~~l~~~L~~~~~-------~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~wv~v~~~~~~ 241 (588)
.+++|.+..++.|.+++...-. .+-.....+.|+|++|+|||+||+.+++.... .| +.++ .
T Consensus 15 ~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ala~~~~~---~~---i~v~------~ 82 (301)
T 3cf0_A 15 EDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQA---NF---ISIK------G 82 (301)
T ss_dssp GGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHHHHHHHTTC---EE---EEEC------H
T ss_pred HHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHHHHHHHhCC---CE---EEEE------h
Confidence 4588999888888877653100 00123457899999999999999999985431 11 2222 1
Q ss_pred HHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhcCCceeEEeccccccCh--------------hHHHHhhcccCC--CCC
Q 007817 242 LRISRALLESITSTNCDFKTLNEVQVKLRIIVDGKKFLLVLDDVWNENY--------------NLWEILKAPFMA--GAR 305 (588)
Q Consensus 242 ~~~~~~il~~l~~~~~~~~~~~~l~~~l~~~l~~k~~LLVlDdv~~~~~--------------~~~~~l~~~l~~--~~~ 305 (588)
..+.. ...+.. ...+...+.......+.+|+||++..... .....+...+.. ...
T Consensus 83 ~~l~~----~~~g~~-----~~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~ 153 (301)
T 3cf0_A 83 PELLT----MWFGES-----EANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKK 153 (301)
T ss_dssp HHHHH----HHHTTC-----TTHHHHHHHHHHHTCSEEEEECSTTHHHHHHTTTTCCSSCSCCHHHHHHHHHHHSSCTTS
T ss_pred HHHHh----hhcCch-----HHHHHHHHHHHHhcCCeEEEEEChHHHhhccCCCcCCcchHHHHHHHHHHHHhhcccCCC
Confidence 22222 221111 11222233333346789999999953110 112333332221 223
Q ss_pred CcEEEEeecchhhhh-h-cc---ccceeeCCCCCHHHHHHHHHHhhcCCCCCCCChhHHHHHHHHHHHhCCCchH
Q 007817 306 NSKIIVTTCHSNVAS-M-MG---SVEHYNLKLLSDEYCWSVFVKHAFERRDAGAHQFSKLFRKKIVAKCGGLPLA 375 (588)
Q Consensus 306 gs~ilvTTR~~~v~~-~-~~---~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~i~~~I~~~c~GlPLa 375 (588)
+..||.||....... . .. -...+.+...+.++-.+++......... ...... ..++..+.|.|-+
T Consensus 154 ~v~vi~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~l~~~~~-~~~~~~----~~la~~~~g~sg~ 223 (301)
T 3cf0_A 154 NVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPV-AKDVDL----EFLAKMTNGFSGA 223 (301)
T ss_dssp SEEEEEEESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCB-CSSCCH----HHHHHTCSSCCHH
T ss_pred CEEEEEecCCccccChHHhcCCccceEEecCCcCHHHHHHHHHHHHccCCC-CccchH----HHHHHHcCCCCHH
Confidence 567777776553221 1 11 2256889999999988988877632211 111222 2456667776644
No 51
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=98.01 E-value=0.0002 Score=73.91 Aligned_cols=188 Identities=14% Similarity=0.112 Sum_probs=100.0
Q ss_pred CCceeechhhHHHHHHHHhcCCC------CCCCCeEEEEEEccCCCcHHHHHHHHHcccccccccccEEEEEEeCCcccH
Q 007817 168 ERAVYGRDEDKARMLEMVLSDDP------TTDANFCVIPIVGMAGAGKTMLAREVYNDRAVQNFKFDVKAWVSVSDDFDV 241 (588)
Q Consensus 168 ~~~~vGR~~e~~~l~~~L~~~~~------~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~wv~v~~~~~~ 241 (588)
-..++|.+..++.|.+++..... ........+.|+|++|+|||+||+.+++.... ..+.++++.-...
T Consensus 114 ~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~aia~~~~~------~~~~v~~~~l~~~ 187 (389)
T 3vfd_A 114 FDDIAGQDLAKQALQEIVILPSLRPELFTGLRAPARGLLLFGPPGNGKTMLAKAVAAESNA------TFFNISAASLTSK 187 (389)
T ss_dssp GGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGCCCSEEEEESSTTSCHHHHHHHHHHHTTC------EEEEECSCCC---
T ss_pred hHHhCCHHHHHHHHHHHHHHhccCHHHhcccCCCCceEEEECCCCCCHHHHHHHHHHhhcC------cEEEeeHHHhhcc
Confidence 35689999999999988732100 00112467899999999999999999875321 1233333322110
Q ss_pred HHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhcCCceeEEecccccc-----------ChhHHHHhhcccC---C-CCCC
Q 007817 242 LRISRALLESITSTNCDFKTLNEVQVKLRIIVDGKKFLLVLDDVWNE-----------NYNLWEILKAPFM---A-GARN 306 (588)
Q Consensus 242 ~~~~~~il~~l~~~~~~~~~~~~l~~~l~~~l~~k~~LLVlDdv~~~-----------~~~~~~~l~~~l~---~-~~~g 306 (588)
. .......+...+...-...+.+|+||+++.. .......+...+. . ....
T Consensus 188 ----------~-----~g~~~~~~~~~~~~a~~~~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~ 252 (389)
T 3vfd_A 188 ----------Y-----VGEGEKLVRALFAVARELQPSIIFIDQVDSLLCERREGEHDASRRLKTEFLIEFDGVQSAGDDR 252 (389)
T ss_dssp -------------------CHHHHHHHHHHHHHSSSEEEEEETGGGGC--------CTHHHHHHHHHHHHHHHC-----C
T ss_pred ----------c-----cchHHHHHHHHHHHHHhcCCeEEEEECchhhcccCCCccchHHHHHHHHHHHHhhcccccCCCC
Confidence 0 0011111222222222356689999999543 1111122222221 1 1223
Q ss_pred cEEEEeecchhhhh-h-cc-ccceeeCCCCCHHHHHHHHHHhhcCCCCCCCChhHHHHHHHHHHHhCCCch-HHHHhh
Q 007817 307 SKIIVTTCHSNVAS-M-MG-SVEHYNLKLLSDEYCWSVFVKHAFERRDAGAHQFSKLFRKKIVAKCGGLPL-AVSTLG 380 (588)
Q Consensus 307 s~ilvTTR~~~v~~-~-~~-~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~i~~~I~~~c~GlPL-ai~~~~ 380 (588)
..||.||....... . .. ....+.+...+.++...++...+...... ........|++.+.|..- +|..+.
T Consensus 253 v~vI~atn~~~~l~~~l~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~~----l~~~~~~~la~~~~g~~~~~l~~L~ 326 (389)
T 3vfd_A 253 VLVMGATNRPQELDEAVLRRFIKRVYVSLPNEETRLLLLKNLLCKQGSP----LTQKELAQLARMTDGYSGSDLTALA 326 (389)
T ss_dssp EEEEEEESCGGGCCHHHHTTCCEEEECCCCCHHHHHHHHHHHHTTSCCC----SCHHHHHHHHHHTTTCCHHHHHHHH
T ss_pred EEEEEecCCchhcCHHHHcCcceEEEcCCcCHHHHHHHHHHHHHhcCCC----CCHHHHHHHHHHcCCCCHHHHHHHH
Confidence 45666665432211 1 11 22468899999999999998876432211 112345678888888554 554443
No 52
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=97.96 E-value=9e-05 Score=83.53 Aligned_cols=156 Identities=13% Similarity=0.136 Sum_probs=89.0
Q ss_pred CceeechhhHHHHHHHHhcCCCCCCCCeEEEEEEccCCCcHHHHHHHHHccccccc---ccccEEEE-EEeCCcccHHHH
Q 007817 169 RAVYGRDEDKARMLEMVLSDDPTTDANFCVIPIVGMAGAGKTMLAREVYNDRAVQN---FKFDVKAW-VSVSDDFDVLRI 244 (588)
Q Consensus 169 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~---~~f~~~~w-v~v~~~~~~~~~ 244 (588)
..++||+.+++++.+.|.... ..-+.|+|++|+|||+||+.+++...... ......+| ++++.-
T Consensus 186 d~~iGr~~~i~~l~~~l~~~~------~~~vlL~G~~GtGKT~la~~la~~l~~~~v~~~~~~~~~~~~~~~~l------ 253 (758)
T 1r6b_X 186 DPLIGREKELERAIQVLCRRR------KNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSL------ 253 (758)
T ss_dssp CCCCSCHHHHHHHHHHHTSSS------SCEEEEECCTTSSHHHHHHHHHHHHHHTCSCGGGTTCEEEECCCC--------
T ss_pred CCccCCHHHHHHHHHHHhccC------CCCeEEEcCCCCCHHHHHHHHHHHHHhCCCChhhcCCEEEEEcHHHH------
Confidence 468999999999999986542 24568999999999999999987642211 01233332 111110
Q ss_pred HHHHHHHhcCCCCCCCCHHHHHHHHHHHh-cCCceeEEecccccc--------ChhH-HHHhhcccCCCCCCcEEEEeec
Q 007817 245 SRALLESITSTNCDFKTLNEVQVKLRIIV-DGKKFLLVLDDVWNE--------NYNL-WEILKAPFMAGARNSKIIVTTC 314 (588)
Q Consensus 245 ~~~il~~l~~~~~~~~~~~~l~~~l~~~l-~~k~~LLVlDdv~~~--------~~~~-~~~l~~~l~~~~~gs~ilvTTR 314 (588)
+.+. ......+.....+...+ ..++.+|+||+++.. .... .+.+...+. . .+..+|.+|.
T Consensus 254 -------~~~~-~~~g~~e~~l~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~~~~~~~~~~L~~~l~-~-~~~~~I~at~ 323 (758)
T 1r6b_X 254 -------LAGT-KYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLS-S-GKIRVIGSTT 323 (758)
T ss_dssp --------CCC-CCSSCHHHHHHHHHHHHSSSSCEEEEETTTTTTTTSCCSSSCHHHHHHHHSSCSS-S-CCCEEEEEEC
T ss_pred -------hccc-cccchHHHHHHHHHHHHHhcCCeEEEEechHHHhhcCCCCcchHHHHHHHHHHHh-C-CCeEEEEEeC
Confidence 0001 11223333323333333 346789999999643 1122 233333332 2 2456666665
Q ss_pred chhhhhh-------ccccceeeCCCCCHHHHHHHHHHhh
Q 007817 315 HSNVASM-------MGSVEHYNLKLLSDEYCWSVFVKHA 346 (588)
Q Consensus 315 ~~~v~~~-------~~~~~~~~l~~L~~~ea~~Lf~~~a 346 (588)
....... ......+.+.+.+.++..+++....
T Consensus 324 ~~~~~~~~~~d~aL~~Rf~~i~v~~p~~~e~~~il~~l~ 362 (758)
T 1r6b_X 324 YQEFSNIFEKDRALARRFQKIDITEPSIEETVQIINGLK 362 (758)
T ss_dssp HHHHHCCCCCTTSSGGGEEEEECCCCCHHHHHHHHHHHH
T ss_pred chHHhhhhhcCHHHHhCceEEEcCCCCHHHHHHHHHHHH
Confidence 5432211 1122468999999999988887654
No 53
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=97.96 E-value=5.3e-05 Score=75.50 Aligned_cols=121 Identities=14% Similarity=0.213 Sum_probs=67.2
Q ss_pred ceeechhhHHHHHHHHhcCC---CCCCCCeEEEEEEccCCCcHHHHHHHHHcccccccccccEEEEEEeCCcccHHHHHH
Q 007817 170 AVYGRDEDKARMLEMVLSDD---PTTDANFCVIPIVGMAGAGKTMLAREVYNDRAVQNFKFDVKAWVSVSDDFDVLRISR 246 (588)
Q Consensus 170 ~~vGR~~e~~~l~~~L~~~~---~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~ 246 (588)
.++|.+..++.+...+.... .........+.|+|++|+|||++|+.+++...... ...+.++++...... ...
T Consensus 18 ~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~ll~G~~GtGKt~la~~la~~~~~~~---~~~~~~~~~~~~~~~-~~~ 93 (311)
T 4fcw_A 18 RVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLFDTE---EAMIRIDMTEYMEKH-AVS 93 (311)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHTCSCTTSCSEEEEEESCSSSSHHHHHHHHHHHHHSCG---GGEEEEEGGGCCSTT-HHH
T ss_pred hcCCHHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCcCHHHHHHHHHHHHcCCC---cceEEeecccccccc-cHH
Confidence 46788888888877776431 00112346899999999999999999998653322 123445554332211 111
Q ss_pred HHHHHhcCCCC--CCCCHHHHHHHHHHHhcCCceeEEeccccccChhHHHHhhccc
Q 007817 247 ALLESITSTNC--DFKTLNEVQVKLRIIVDGKKFLLVLDDVWNENYNLWEILKAPF 300 (588)
Q Consensus 247 ~il~~l~~~~~--~~~~~~~l~~~l~~~l~~k~~LLVlDdv~~~~~~~~~~l~~~l 300 (588)
.+ ++.... .......+...+. ....-+|+||++...+......+...+
T Consensus 94 ~l---~g~~~~~~~~~~~~~~~~~~~---~~~~~vl~lDEi~~l~~~~~~~Ll~~l 143 (311)
T 4fcw_A 94 RL---IGAPPGYVGYEEGGQLTEAVR---RRPYSVILFDAIEKAHPDVFNILLQML 143 (311)
T ss_dssp HH---HCCCTTSTTTTTCCHHHHHHH---HCSSEEEEEETGGGSCHHHHHHHHHHH
T ss_pred Hh---cCCCCccccccccchHHHHHH---hCCCeEEEEeChhhcCHHHHHHHHHHH
Confidence 11 221111 1111112222222 234579999999877666666665554
No 54
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=97.93 E-value=0.0001 Score=78.18 Aligned_cols=185 Identities=12% Similarity=0.093 Sum_probs=101.1
Q ss_pred CceeechhhHHHHHHHHhcCCC-------CCCCCeEEEEEEccCCCcHHHHHHHHHcccccccccccEEEEEEeCCcccH
Q 007817 169 RAVYGRDEDKARMLEMVLSDDP-------TTDANFCVIPIVGMAGAGKTMLAREVYNDRAVQNFKFDVKAWVSVSDDFDV 241 (588)
Q Consensus 169 ~~~vGR~~e~~~l~~~L~~~~~-------~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~wv~v~~~~~~ 241 (588)
..++|.+..+++|.+++..... .+.....-+.|+|++|+|||+||+.+++... . . .+.++++.
T Consensus 204 ~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lAraia~~~~--~-~---fv~vn~~~---- 273 (489)
T 3hu3_A 204 DDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETG--A-F---FFLINGPE---- 273 (489)
T ss_dssp GGCCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHHHHHHHHCS--S-E---EEEEEHHH----
T ss_pred HHcCCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHHHHHHHHhC--C-C---EEEEEchH----
Confidence 4589999999999888753200 0012335688999999999999999987542 1 2 22333221
Q ss_pred HHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhcCCceeEEeccccccC-----------hhHHHHhhcccCC--CCCCcE
Q 007817 242 LRISRALLESITSTNCDFKTLNEVQVKLRIIVDGKKFLLVLDDVWNEN-----------YNLWEILKAPFMA--GARNSK 308 (588)
Q Consensus 242 ~~~~~~il~~l~~~~~~~~~~~~l~~~l~~~l~~k~~LLVlDdv~~~~-----------~~~~~~l~~~l~~--~~~gs~ 308 (588)
+...+. ......+...+.....+++.+|+||++.... ......+...+.. ...+..
T Consensus 274 ------l~~~~~-----g~~~~~~~~~f~~A~~~~p~iLfLDEId~l~~~~~~~~~~~~~~~~~~LL~~ld~~~~~~~v~ 342 (489)
T 3hu3_A 274 ------IMSKLA-----GESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVI 342 (489)
T ss_dssp ------HHTSCT-----THHHHHHHHHHHHHHHTCSEEEEEESHHHHCBCTTSCCCHHHHHHHHHHHHHHHHSCTTSCEE
T ss_pred ------hhhhhc-----chhHHHHHHHHHHHHhcCCcEEEecchhhhccccccccchHHHHHHHHHHHHhhccccCCceE
Confidence 111100 0111222333444445778899999994211 1122333333321 223456
Q ss_pred EEEeecchhh-hhhc----cccceeeCCCCCHHHHHHHHHHhhcCCCCCCCChhHHHHHHHHHHHhCCC-chHHHHh
Q 007817 309 IIVTTCHSNV-ASMM----GSVEHYNLKLLSDEYCWSVFVKHAFERRDAGAHQFSKLFRKKIVAKCGGL-PLAVSTL 379 (588)
Q Consensus 309 ilvTTR~~~v-~~~~----~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~i~~~I~~~c~Gl-PLai~~~ 379 (588)
||.||..... ...+ .-...+.+...+.++-.+++..++..... .....+ .++++.+.|. +-.|..+
T Consensus 343 vIaaTn~~~~Ld~al~r~gRf~~~i~i~~P~~~eR~~IL~~~~~~~~l-~~~~~l----~~la~~t~g~s~~dL~~L 414 (489)
T 3hu3_A 343 VMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKL-ADDVDL----EQVANETHGHVGADLAAL 414 (489)
T ss_dssp EEEEESCGGGBCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHTTTSCB-CTTCCH----HHHHHTCTTCCHHHHHHH
T ss_pred EEEecCCccccCHHHhCCCcCceEEEeCCCCHHHHHHHHHHHHhcCCC-cchhhH----HHHHHHccCCcHHHHHHH
Confidence 6667765432 2221 12246889999999999999887632211 122223 3466777764 4444444
No 55
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=97.90 E-value=0.00017 Score=72.78 Aligned_cols=178 Identities=15% Similarity=0.113 Sum_probs=95.1
Q ss_pred CceeechhhHHHHHHHHhcCCCCCCCCeEEEEEEccCCCcHHHHHHHHHcccccccccccEEEEEEeCCcccHHHHHHHH
Q 007817 169 RAVYGRDEDKARMLEMVLSDDPTTDANFCVIPIVGMAGAGKTMLAREVYNDRAVQNFKFDVKAWVSVSDDFDVLRISRAL 248 (588)
Q Consensus 169 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i 248 (588)
..++|.+..++.+...+..... .......+.|+|++|+||||||+.+++.... .|.. .+.+-.
T Consensus 25 ~~~~g~~~~~~~l~~~i~~~~~-~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~---~~~~---~sg~~~---------- 87 (334)
T 1in4_A 25 DEFIGQENVKKKLSLALEAAKM-RGEVLDHVLLAGPPGLGKTTLAHIIASELQT---NIHV---TSGPVL---------- 87 (334)
T ss_dssp GGCCSCHHHHHHHHHHHHHHHH-HTCCCCCEEEESSTTSSHHHHHHHHHHHHTC---CEEE---EETTTC----------
T ss_pred HHccCcHHHHHHHHHHHHHHHh-cCCCCCeEEEECCCCCcHHHHHHHHHHHhCC---CEEE---EechHh----------
Confidence 4578888777777666643200 0123457899999999999999999986532 1110 111000
Q ss_pred HHHhcCCCCCCCCHHHHHHHHHHHhcCCceeEEeccccccChhHHHHhhcccCCC--------C----------CCcEEE
Q 007817 249 LESITSTNCDFKTLNEVQVKLRIIVDGKKFLLVLDDVWNENYNLWEILKAPFMAG--------A----------RNSKII 310 (588)
Q Consensus 249 l~~l~~~~~~~~~~~~l~~~l~~~l~~k~~LLVlDdv~~~~~~~~~~l~~~l~~~--------~----------~gs~il 310 (588)
....++...+. .+ .++-++++|++........+.+...+... . +...++
T Consensus 88 -----------~~~~~l~~~~~-~~-~~~~v~~iDE~~~l~~~~~e~L~~~~~~~~~~i~~~~~~~~~~i~~~l~~~~li 154 (334)
T 1in4_A 88 -----------VKQGDMAAILT-SL-ERGDVLFIDEIHRLNKAVEELLYSAIEDFQIDIMIGKGPSAKSIRIDIQPFTLV 154 (334)
T ss_dssp -----------CSHHHHHHHHH-HC-CTTCEEEEETGGGCCHHHHHHHHHHHHTSCCCC---------------CCCEEE
T ss_pred -----------cCHHHHHHHHH-Hc-cCCCEEEEcchhhcCHHHHHHHHHHHHhcccceeeccCcccccccccCCCeEEE
Confidence 01111111111 11 23457788988655433333332221111 0 011222
Q ss_pred -Eeecchhhhhhcc--ccceeeCCCCCHHHHHHHHHHhhcCCCCCCCChhHHHHHHHHHHHhCCCchHHHHhh
Q 007817 311 -VTTCHSNVASMMG--SVEHYNLKLLSDEYCWSVFVKHAFERRDAGAHQFSKLFRKKIVAKCGGLPLAVSTLG 380 (588)
Q Consensus 311 -vTTR~~~v~~~~~--~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~i~~~I~~~c~GlPLai~~~~ 380 (588)
.|++...+...+. ......+++.+.++-.+++.+.+..... ....+.+..|++.++|.|-.+..+.
T Consensus 155 ~at~~~~~Ls~~l~sR~~l~~~Ld~~~~~~l~~iL~~~~~~~~~----~~~~~~~~~ia~~~~G~~R~a~~ll 223 (334)
T 1in4_A 155 GATTRSGLLSSPLRSRFGIILELDFYTVKELKEIIKRAASLMDV----EIEDAAAEMIAKRSRGTPRIAIRLT 223 (334)
T ss_dssp EEESCGGGSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHTTC----CBCHHHHHHHHHTSTTCHHHHHHHH
T ss_pred EecCCcccCCHHHHHhcCceeeCCCCCHHHHHHHHHHHHHHcCC----CcCHHHHHHHHHhcCCChHHHHHHH
Confidence 3444333222211 1235789999999999999887632111 1223446789999999997654443
No 56
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=97.88 E-value=9.3e-05 Score=78.05 Aligned_cols=98 Identities=10% Similarity=-0.003 Sum_probs=61.0
Q ss_pred eeEEeccccccChhHHHHhhcccCCCCCCcEEEEee----------c----chhhhh-hccccceeeCCCCCHHHHHHHH
Q 007817 278 FLLVLDDVWNENYNLWEILKAPFMAGARNSKIIVTT----------C----HSNVAS-MMGSVEHYNLKLLSDEYCWSVF 342 (588)
Q Consensus 278 ~LLVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTT----------R----~~~v~~-~~~~~~~~~l~~L~~~ea~~Lf 342 (588)
-++++|+++..+....+.|...+...... -+|+.| . ...+.. .......+.+.+++.++..+++
T Consensus 297 ~VliIDEa~~l~~~a~~aLlk~lEe~~~~-~~il~tn~~~~~i~~~~~~~~~~~l~~~i~sR~~~~~~~~~~~~e~~~iL 375 (456)
T 2c9o_A 297 GVLFVDEVHMLDIECFTYLHRALESSIAP-IVIFASNRGNCVIRGTEDITSPHGIPLDLLDRVMIIRTMLYTPQEMKQII 375 (456)
T ss_dssp CEEEEESGGGCBHHHHHHHHHHTTSTTCC-EEEEEECCSEEECBTTSSCEEETTCCHHHHTTEEEEECCCCCHHHHHHHH
T ss_pred eEEEEechhhcCHHHHHHHHHHhhccCCC-EEEEecCCccccccccccccccccCChhHHhhcceeeCCCCCHHHHHHHH
Confidence 38999999888878888888777665444 344344 2 111111 1123345799999999999999
Q ss_pred HHhhcCCCCCCCChhHHHHHHHHHHHh-CCCchHHHHhh
Q 007817 343 VKHAFERRDAGAHQFSKLFRKKIVAKC-GGLPLAVSTLG 380 (588)
Q Consensus 343 ~~~a~~~~~~~~~~~~~~i~~~I~~~c-~GlPLai~~~~ 380 (588)
...+-..+. . ...+....|++.+ +|.|..+..+.
T Consensus 376 ~~~~~~~~~-~---~~~~~~~~i~~~a~~g~~r~a~~ll 410 (456)
T 2c9o_A 376 KIRAQTEGI-N---ISEEALNHLGEIGTKTTLRYSVQLL 410 (456)
T ss_dssp HHHHHHHTC-C---BCHHHHHHHHHHHHHSCHHHHHHTH
T ss_pred HHHHHHhCC-C---CCHHHHHHHHHHccCCCHHHHHHHH
Confidence 877532111 1 1223345678888 78887655443
No 57
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=97.86 E-value=9.3e-06 Score=71.14 Aligned_cols=110 Identities=12% Similarity=0.051 Sum_probs=62.9
Q ss_pred ceeechhhHHHHHHHHhcCCCCCCCCeEEEEEEccCCCcHHHHHHHHHcccccccccccEEEEEEeCCcccHHHHHHHHH
Q 007817 170 AVYGRDEDKARMLEMVLSDDPTTDANFCVIPIVGMAGAGKTMLAREVYNDRAVQNFKFDVKAWVSVSDDFDVLRISRALL 249 (588)
Q Consensus 170 ~~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~il 249 (588)
.++|++..++++.+.+..... ...-|.|+|++|+|||++|+.+++... ..+.++++.- ....
T Consensus 5 ~~iG~s~~~~~l~~~~~~~~~----~~~~vll~G~~GtGKt~lA~~i~~~~~-------~~~~~~~~~~--~~~~----- 66 (143)
T 3co5_A 5 DKLGNSAAIQEMNREVEAAAK----RTSPVFLTGEAGSPFETVARYFHKNGT-------PWVSPARVEY--LIDM----- 66 (143)
T ss_dssp ---CCCHHHHHHHHHHHHHHT----CSSCEEEEEETTCCHHHHHGGGCCTTS-------CEECCSSTTH--HHHC-----
T ss_pred CceeCCHHHHHHHHHHHHHhC----CCCcEEEECCCCccHHHHHHHHHHhCC-------CeEEechhhC--ChHh-----
Confidence 578999988888888754221 123477999999999999999987432 1122222211 0000
Q ss_pred HHhcCCCCCCCCHHHHHHHHHHHhcCCceeEEeccccccChhHHHHhhcccCCC-CCCcEEEEeecc
Q 007817 250 ESITSTNCDFKTLNEVQVKLRIIVDGKKFLLVLDDVWNENYNLWEILKAPFMAG-ARNSKIIVTTCH 315 (588)
Q Consensus 250 ~~l~~~~~~~~~~~~l~~~l~~~l~~k~~LLVlDdv~~~~~~~~~~l~~~l~~~-~~gs~ilvTTR~ 315 (588)
...+... .+.-.|+||++..........+...+... ..+.++|.||..
T Consensus 67 ----------------~~~~~~~--a~~~~l~lDei~~l~~~~q~~Ll~~l~~~~~~~~~iI~~tn~ 115 (143)
T 3co5_A 67 ----------------PMELLQK--AEGGVLYVGDIAQYSRNIQTGITFIIGKAERCRVRVIASCSY 115 (143)
T ss_dssp ----------------HHHHHHH--TTTSEEEEEECTTCCHHHHHHHHHHHHHHTTTTCEEEEEEEE
T ss_pred ----------------hhhHHHh--CCCCeEEEeChHHCCHHHHHHHHHHHHhCCCCCEEEEEecCC
Confidence 0111111 22457899999776655555555544432 345778888753
No 58
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=97.84 E-value=4e-05 Score=74.62 Aligned_cols=132 Identities=14% Similarity=0.095 Sum_probs=68.4
Q ss_pred CceeechhhHHHHHHHHhcCCCCCCCCeEEEEEEccCCCcHHHHHHHHHcccccccccccEEEEEEeCCcccHHHHHHHH
Q 007817 169 RAVYGRDEDKARMLEMVLSDDPTTDANFCVIPIVGMAGAGKTMLAREVYNDRAVQNFKFDVKAWVSVSDDFDVLRISRAL 248 (588)
Q Consensus 169 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i 248 (588)
..++|.+..+.++.+.+..... ....+.|+|++|+|||+||+.+++...... ...+.++++.-. . ..+..
T Consensus 6 ~~~ig~~~~~~~~~~~~~~~~~----~~~~vll~G~~GtGKt~la~~i~~~~~~~~---~~~~~v~~~~~~-~-~~~~~- 75 (265)
T 2bjv_A 6 DNLLGEANSFLEVLEQVSHLAP----LDKPVLIIGERGTGKELIASRLHYLSSRWQ---GPFISLNCAALN-E-NLLDS- 75 (265)
T ss_dssp ----CCCHHHHHHHHHHHHHTT----SCSCEEEECCTTSCHHHHHHHHHHTSTTTT---SCEEEEEGGGSC-H-HHHHH-
T ss_pred ccceeCCHHHHHHHHHHHHHhC----CCCCEEEECCCCCcHHHHHHHHHHhcCccC---CCeEEEecCCCC-h-hHHHH-
Confidence 3578999998888877654321 124577999999999999999998643221 123445555432 1 11111
Q ss_pred HHHhcCCCCCC-CCH-HHHHHHHHHHhcCCceeEEeccccccChhHHHHhhcccCCC-----------CCCcEEEEeecc
Q 007817 249 LESITSTNCDF-KTL-NEVQVKLRIIVDGKKFLLVLDDVWNENYNLWEILKAPFMAG-----------ARNSKIIVTTCH 315 (588)
Q Consensus 249 l~~l~~~~~~~-~~~-~~l~~~l~~~l~~k~~LLVlDdv~~~~~~~~~~l~~~l~~~-----------~~gs~ilvTTR~ 315 (588)
.+.+..... ... ......+. ....-+|+||++..........+...+..+ ....+||.||..
T Consensus 76 --~l~g~~~~~~~g~~~~~~~~l~---~a~~~~l~lDEi~~l~~~~q~~Ll~~l~~~~~~~~g~~~~~~~~~~iI~atn~ 150 (265)
T 2bjv_A 76 --ELFGHEAGAFTGAQKRHPGRFE---RADGGTLFLDELATAPMMVQEKLLRVIEYGELERVGGSQPLQVNVRLVCATNA 150 (265)
T ss_dssp --HHHCCC---------CCCCHHH---HTTTSEEEEESGGGSCHHHHHHHHHHHHHCEECCCCC--CEECCCEEEEEESS
T ss_pred --HhcCCcccccccccccccchhh---hcCCcEEEEechHhcCHHHHHHHHHHHHhCCeecCCCcccccCCeEEEEecCc
Confidence 121111100 000 00000111 123468999999876655555554443321 134678888865
No 59
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=97.83 E-value=6.6e-05 Score=84.58 Aligned_cols=149 Identities=14% Similarity=0.140 Sum_probs=82.3
Q ss_pred CceeechhhHHHHHHHHhcCCCCCCCCeEEEEEEccCCCcHHHHHHHHHccccccccc---ccEEEEEEeCCcccHHHHH
Q 007817 169 RAVYGRDEDKARMLEMVLSDDPTTDANFCVIPIVGMAGAGKTMLAREVYNDRAVQNFK---FDVKAWVSVSDDFDVLRIS 245 (588)
Q Consensus 169 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~~---f~~~~wv~v~~~~~~~~~~ 245 (588)
..++||+.+++++.+.|.... ..-+.|+|++|+|||++|+.+++........ .++.+ +.+.-
T Consensus 180 d~iiG~~~~i~~l~~~l~~~~------~~~vLL~G~pGtGKT~la~~la~~l~~~~~p~~l~~~~~-~~~~~-------- 244 (758)
T 3pxi_A 180 DPVIGRSKEIQRVIEVLSRRT------KNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRV-MTLDM-------- 244 (758)
T ss_dssp CCCCCCHHHHHHHHHHHHCSS------SCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCE-ECC----------
T ss_pred CCccCchHHHHHHHHHHhCCC------CCCeEEECCCCCCHHHHHHHHHHHHhcCCCChhhcCCeE-EEecc--------
Confidence 468999999999999997643 2347899999999999999998864211100 11111 11111
Q ss_pred HHHHHHhcCCCCCCCCHHHHHHHHHHHhcCCceeEEeccccccChhHHHHhhcccCCCCCCcEEEEeecchhhhh-----
Q 007817 246 RALLESITSTNCDFKTLNEVQVKLRIIVDGKKFLLVLDDVWNENYNLWEILKAPFMAGARNSKIIVTTCHSNVAS----- 320 (588)
Q Consensus 246 ~~il~~l~~~~~~~~~~~~l~~~l~~~l~~k~~LLVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTTR~~~v~~----- 320 (588)
.....+. -... +...+......++.+|++|.- ....+.+...+. ....++|.||.......
T Consensus 245 ---g~~~~G~--~e~~---l~~~~~~~~~~~~~iLfiD~~----~~~~~~L~~~l~--~~~v~~I~at~~~~~~~~~~~d 310 (758)
T 3pxi_A 245 ---GTKYRGE--FEDR---LKKVMDEIRQAGNIILFIDAA----IDASNILKPSLA--RGELQCIGATTLDEYRKYIEKD 310 (758)
T ss_dssp -------------CTT---HHHHHHHHHTCCCCEEEECC------------CCCTT--SSSCEEEEECCTTTTHHHHTTC
T ss_pred ---cccccch--HHHH---HHHHHHHHHhcCCEEEEEcCc----hhHHHHHHHHHh--cCCEEEEeCCChHHHHHHhhcc
Confidence 0000000 0112 222333333467889999921 122233433333 22456676665544211
Q ss_pred -h-ccccceeeCCCCCHHHHHHHHHHhh
Q 007817 321 -M-MGSVEHYNLKLLSDEYCWSVFVKHA 346 (588)
Q Consensus 321 -~-~~~~~~~~l~~L~~~ea~~Lf~~~a 346 (588)
. ......+.++..+.++..+++....
T Consensus 311 ~al~rRf~~i~v~~p~~~~~~~il~~~~ 338 (758)
T 3pxi_A 311 AALERRFQPIQVDQPSVDESIQILQGLR 338 (758)
T ss_dssp SHHHHSEEEEECCCCCHHHHHHHHHHTT
T ss_pred HHHHhhCcEEEeCCCCHHHHHHHHHHHH
Confidence 1 1123579999999999999998654
No 60
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=97.83 E-value=0.00066 Score=65.48 Aligned_cols=184 Identities=16% Similarity=0.099 Sum_probs=93.2
Q ss_pred CceeechhhHHHHHHHH---hcCCC---CCCCCeEEEEEEccCCCcHHHHHHHHHcccccccccccEEEEEEeCCcccHH
Q 007817 169 RAVYGRDEDKARMLEMV---LSDDP---TTDANFCVIPIVGMAGAGKTMLAREVYNDRAVQNFKFDVKAWVSVSDDFDVL 242 (588)
Q Consensus 169 ~~~vGR~~e~~~l~~~L---~~~~~---~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~wv~v~~~~~~~ 242 (588)
.+++|.+..++++.+.+ ..... .+....+-+.|+|++|+||||||+.+++.... .| +.++.+.-.+
T Consensus 12 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~---~~---~~i~~~~~~~-- 83 (257)
T 1lv7_A 12 ADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKV---PF---FTISGSDFVE-- 83 (257)
T ss_dssp GGSCSCHHHHHHTHHHHHHHHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHHHHTC---CE---EEECSCSSTT--
T ss_pred HHhcCcHHHHHHHHHHHHHHhCHHHHHHcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCC---CE---EEEeHHHHHH--
Confidence 46889887777665543 22110 00112345889999999999999999985421 22 3333222110
Q ss_pred HHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhcCCceeEEeccccccCh--------------hHHHHhhcccCC--CCCC
Q 007817 243 RISRALLESITSTNCDFKTLNEVQVKLRIIVDGKKFLLVLDDVWNENY--------------NLWEILKAPFMA--GARN 306 (588)
Q Consensus 243 ~~~~~il~~l~~~~~~~~~~~~l~~~l~~~l~~k~~LLVlDdv~~~~~--------------~~~~~l~~~l~~--~~~g 306 (588)
.. .......+...+.......+.++++|++..... .....+...+.. ...+
T Consensus 84 ------------~~-~~~~~~~~~~~~~~a~~~~~~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~ 150 (257)
T 1lv7_A 84 ------------MF-VGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEG 150 (257)
T ss_dssp ------------SC-CCCCHHHHHHHHHHHHTTCSEEEEETTHHHHTCCCSTTSCCTTCHHHHHHHHHHHHHHTCCSSSC
T ss_pred ------------Hh-hhhhHHHHHHHHHHHHHcCCeeehhhhhhhhccCCCCCcCCCchHHHHHHHHHHHHhhCcccCCC
Confidence 00 011222333333444445678999999842110 112222222211 2234
Q ss_pred cEEEEeecchhhh-hhc-c---ccceeeCCCCCHHHHHHHHHHhhcCCCCCCCChhHHHHHHHHHHHhCC-CchHHHH
Q 007817 307 SKIIVTTCHSNVA-SMM-G---SVEHYNLKLLSDEYCWSVFVKHAFERRDAGAHQFSKLFRKKIVAKCGG-LPLAVST 378 (588)
Q Consensus 307 s~ilvTTR~~~v~-~~~-~---~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~i~~~I~~~c~G-lPLai~~ 378 (588)
..||.||...... ..+ . -...+.+...+.++-.+++..+.-... ...... ...++..+.| .+--|..
T Consensus 151 ~~vI~~tn~~~~l~~~l~r~~rf~~~i~i~~P~~~~r~~il~~~~~~~~-l~~~~~----~~~la~~~~G~~~~dl~~ 223 (257)
T 1lv7_A 151 IIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVP-LAPDID----AAIIARGTPGFSGADLAN 223 (257)
T ss_dssp EEEEEEESCTTTSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSC-BCTTCC----HHHHHHTCTTCCHHHHHH
T ss_pred EEEEEeeCCchhCCHHHcCCCcCCeEEEeCCCCHHHHHHHHHHHHhcCC-CCcccc----HHHHHHHcCCCCHHHHHH
Confidence 5677777655322 111 1 134677888888888888877652211 111111 2236666777 5544443
No 61
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=97.82 E-value=2.1e-05 Score=73.15 Aligned_cols=118 Identities=23% Similarity=0.209 Sum_probs=61.6
Q ss_pred hHHHHHHHHhcCCCCCCCCeEEEEEEccCCCcHHHHHHHHHcccccccccccEEEEEEeCCcccHHHHHHHHHHHhcCCC
Q 007817 177 DKARMLEMVLSDDPTTDANFCVIPIVGMAGAGKTMLAREVYNDRAVQNFKFDVKAWVSVSDDFDVLRISRALLESITSTN 256 (588)
Q Consensus 177 e~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~il~~l~~~~ 256 (588)
.++.+.+++..... ......+.|+|++|+|||+||+.+++..... ...++|++++ .+...+......
T Consensus 37 ~~~~~~~~~~~~~~--~~~~~~~~l~G~~GtGKT~la~~i~~~~~~~---~~~~~~~~~~------~~~~~~~~~~~~-- 103 (202)
T 2w58_A 37 AIRFAERFVAEYEP--GKKMKGLYLHGSFGVGKTYLLAAIANELAKR---NVSSLIVYVP------ELFRELKHSLQD-- 103 (202)
T ss_dssp HHHHHHHHHHHCCS--SCCCCEEEEECSTTSSHHHHHHHHHHHHHTT---TCCEEEEEHH------HHHHHHHHC-----
T ss_pred HHHHHHHHHHHhhh--ccCCCeEEEECCCCCCHHHHHHHHHHHHHHc---CCeEEEEEhH------HHHHHHHHHhcc--
Confidence 44556666654421 1122678899999999999999999876532 2345556543 334444332211
Q ss_pred CCCCCHHHHHHHHHHHhcCCceeEEeccccccChhHHHH--hhc-ccCCC-CCCcEEEEeecc
Q 007817 257 CDFKTLNEVQVKLRIIVDGKKFLLVLDDVWNENYNLWEI--LKA-PFMAG-ARNSKIIVTTCH 315 (588)
Q Consensus 257 ~~~~~~~~l~~~l~~~l~~k~~LLVlDdv~~~~~~~~~~--l~~-~l~~~-~~gs~ilvTTR~ 315 (588)
.........+. +.-+|||||++......|.. +.. .+... ..+.++|+||..
T Consensus 104 ---~~~~~~~~~~~-----~~~~lilDei~~~~~~~~~~~~ll~~~l~~~~~~~~~~i~tsn~ 158 (202)
T 2w58_A 104 ---QTMNEKLDYIK-----KVPVLMLDDLGAEAMSSWVRDDVFGPILQYRMFENLPTFFTSNF 158 (202)
T ss_dssp ---CCCHHHHHHHH-----HSSEEEEEEECCC---CCGGGTTHHHHHHHHHHTTCCEEEEESS
T ss_pred ---chHHHHHHHhc-----CCCEEEEcCCCCCcCCHHHHHHHHHHHHHHHHhCCCCEEEEcCC
Confidence 12233333322 23499999996543222221 111 11111 235578888864
No 62
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=97.76 E-value=5.2e-05 Score=75.40 Aligned_cols=161 Identities=13% Similarity=0.078 Sum_probs=83.7
Q ss_pred CceeechhhHHHHHHHHhcCCCCCCCCeEEEEEEccCCCcHHHHHHHHHcccccccccccEEEEEEeCCcccHHHHHHHH
Q 007817 169 RAVYGRDEDKARMLEMVLSDDPTTDANFCVIPIVGMAGAGKTMLAREVYNDRAVQNFKFDVKAWVSVSDDFDVLRISRAL 248 (588)
Q Consensus 169 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i 248 (588)
..++|+...+.++.+.+..... ....|.|+|++|+|||++|+.+++.....+..| +.++++.-.. .++.
T Consensus 2 ~~iig~s~~~~~~~~~~~~~a~----~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~~~---v~v~~~~~~~--~l~~-- 70 (304)
T 1ojl_A 2 SHMIGSSPAMQHLLNEIAMVAP----SDATVLIHGDSGTGKELVARALHACSARSDRPL---VTLNCAALNE--SLLE-- 70 (304)
T ss_dssp -CCCCCSHHHHHHHHHHHHHCS----TTSCEEEESCTTSCHHHHHHHHHHHSSCSSSCC---CEEECSSCCH--HHHH--
T ss_pred CCcEECCHHHHHHHHHHHHHhC----CCCcEEEECCCCchHHHHHHHHHHhCcccCCCe---EEEeCCCCCh--HHHH--
Confidence 3578999999998888765322 224577999999999999999988543222122 3345543321 1221
Q ss_pred HHHhcCCCCCCCCH--HHHHHHHHHHhcCCceeEEeccccccChhHHHHhhcccCCC-----------CCCcEEEEeecc
Q 007817 249 LESITSTNCDFKTL--NEVQVKLRIIVDGKKFLLVLDDVWNENYNLWEILKAPFMAG-----------ARNSKIIVTTCH 315 (588)
Q Consensus 249 l~~l~~~~~~~~~~--~~l~~~l~~~l~~k~~LLVlDdv~~~~~~~~~~l~~~l~~~-----------~~gs~ilvTTR~ 315 (588)
..+.+.....-.. ......+.. ...-+|+||++..........+...+... ....+||.||..
T Consensus 71 -~~lfg~~~g~~tg~~~~~~g~~~~---a~~g~L~LDEi~~l~~~~q~~Ll~~l~~~~~~~~g~~~~~~~~~riI~atn~ 146 (304)
T 1ojl_A 71 -SELFGHEKGAFTGADKRREGRFVE---ADGGTLFLDEIGDISPLMQVRLLRAIQEREVQRVGSNQTISVDVRLIAATHR 146 (304)
T ss_dssp -HHHTCCCSSCCC---CCCCCHHHH---HTTSEEEEESCTTCCHHHHHHHHHHHHSSBCCBTTBCCCCBCCCEEEEEESS
T ss_pred -HHhcCccccccCchhhhhcCHHHh---cCCCEEEEeccccCCHHHHHHHHHHHhcCEeeecCCcccccCCeEEEEecCc
Confidence 1222221110000 000001111 12357999999876655555554444322 134678887765
Q ss_pred hhh---hh-hcc-------ccceeeCCCCC--HHHHHHHHHH
Q 007817 316 SNV---AS-MMG-------SVEHYNLKLLS--DEYCWSVFVK 344 (588)
Q Consensus 316 ~~v---~~-~~~-------~~~~~~l~~L~--~~ea~~Lf~~ 344 (588)
... .. .+. ....+.+++|. .++...++.+
T Consensus 147 ~l~~~v~~g~fr~~L~~Rl~~~~i~lPpL~eR~edi~~l~~~ 188 (304)
T 1ojl_A 147 DLAEEVSAGRFRQDLYYRLNVVAIEMPSLRQRREDIPLLADH 188 (304)
T ss_dssp CHHHHHHHTSSCHHHHHHHSSEEEECCCSGGGGGGHHHHHHH
T ss_pred cHHHHHHhCCcHHHHHhhcCeeEEeccCHHHhHhhHHHHHHH
Confidence 311 10 010 12346788887 4555555443
No 63
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=97.70 E-value=0.00025 Score=70.31 Aligned_cols=52 Identities=19% Similarity=0.253 Sum_probs=37.8
Q ss_pred CceeechhhHHHHHHHHhcC--CCC------CCCCeEEEEEEccCCCcHHHHHHHHHccc
Q 007817 169 RAVYGRDEDKARMLEMVLSD--DPT------TDANFCVIPIVGMAGAGKTMLAREVYNDR 220 (588)
Q Consensus 169 ~~~vGR~~e~~~l~~~L~~~--~~~------~~~~~~vv~I~G~gGiGKTtLA~~v~~~~ 220 (588)
..++|.+..++.+...+... ... .......+.|+|++|+|||+||+.+++..
T Consensus 15 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~l 74 (310)
T 1ofh_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLA 74 (310)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHHHH
T ss_pred hhcCChHHHHHHHHHHHHHHHhhhhhcccccccCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 45889999999988877541 000 00123567899999999999999998854
No 64
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=97.66 E-value=8.2e-05 Score=83.79 Aligned_cols=156 Identities=18% Similarity=0.182 Sum_probs=89.9
Q ss_pred CceeechhhHHHHHHHHhcCCCC---CCCCeEEEEEEccCCCcHHHHHHHHHcccccccccccEEEEEEeCCcccHHHHH
Q 007817 169 RAVYGRDEDKARMLEMVLSDDPT---TDANFCVIPIVGMAGAGKTMLAREVYNDRAVQNFKFDVKAWVSVSDDFDVLRIS 245 (588)
Q Consensus 169 ~~~vGR~~e~~~l~~~L~~~~~~---~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~ 245 (588)
..++|.+..++.+...+...... .......+.++|++|+|||+||+.+++..... -...+.++++.-.+..
T Consensus 491 ~~viGq~~a~~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~ala~~l~~~---~~~~i~i~~s~~~~~~--- 564 (758)
T 3pxi_A 491 SRVIGQDEAVVAVAKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALAESIFGD---EESMIRIDMSEYMEKH--- 564 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHTTTCSCTTSCSEEEEEESCTTSSHHHHHHHHHHHHHSC---TTCEEEEEGGGGCSSC---
T ss_pred CcCcChHHHHHHHHHHHHHHHcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHhcCC---CcceEEEechhccccc---
Confidence 45899999988888887643211 12233479999999999999999999865321 1233445554321100
Q ss_pred HHHHHHhcCCCCCCCCHHHHHHHHHHHhcCCceeEEeccccccChhHHHHhhcccCCC-----------CCCcEEEEeec
Q 007817 246 RALLESITSTNCDFKTLNEVQVKLRIIVDGKKFLLVLDDVWNENYNLWEILKAPFMAG-----------ARNSKIIVTTC 314 (588)
Q Consensus 246 ~~il~~l~~~~~~~~~~~~l~~~l~~~l~~k~~LLVlDdv~~~~~~~~~~l~~~l~~~-----------~~gs~ilvTTR 314 (588)
......+...++ ....-+|+||++........+.+...+..+ .....||+||.
T Consensus 565 -------------~~~~~~l~~~~~---~~~~~vl~lDEi~~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~ttn 628 (758)
T 3pxi_A 565 -------------STSGGQLTEKVR---RKPYSVVLLDAIEKAHPDVFNILLQVLEDGRLTDSKGRTVDFRNTILIMTSN 628 (758)
T ss_dssp -------------CCC---CHHHHH---HCSSSEEEEECGGGSCHHHHHHHHHHHHHSBCC-----CCBCTTCEEEEEES
T ss_pred -------------ccccchhhHHHH---hCCCeEEEEeCccccCHHHHHHHHHHhccCeEEcCCCCEeccCCeEEEEeCC
Confidence 000111111121 234459999999877766666666554331 13467888886
Q ss_pred chh-----h----hhhc-----c-ccceeeCCCCCHHHHHHHHHHhh
Q 007817 315 HSN-----V----ASMM-----G-SVEHYNLKLLSDEYCWSVFVKHA 346 (588)
Q Consensus 315 ~~~-----v----~~~~-----~-~~~~~~l~~L~~~ea~~Lf~~~a 346 (588)
... + ...+ . -...+.+.+++.++...++....
T Consensus 629 ~~~~~~~~~~~~~~~~f~p~l~~Rl~~~i~~~~l~~~~~~~i~~~~l 675 (758)
T 3pxi_A 629 VGASEKDKVMGELKRAFRPEFINRIDEIIVFHSLEKKHLTEIVSLMS 675 (758)
T ss_dssp SSTTCCHHHHHHHHHHSCHHHHTTSSEEEECC--CHHHHHHHHHHHH
T ss_pred CChhhHHHHHHHHHhhCCHHHHhhCCeEEecCCCCHHHHHHHHHHHH
Confidence 311 0 1111 1 12478889999888887776554
No 65
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=97.64 E-value=3e-05 Score=68.32 Aligned_cols=86 Identities=15% Similarity=0.044 Sum_probs=50.5
Q ss_pred EEEEEEccCCCcHHHHHHHHHcccccccccccEEEEEEeCCcccHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhcCC
Q 007817 197 CVIPIVGMAGAGKTMLAREVYNDRAVQNFKFDVKAWVSVSDDFDVLRISRALLESITSTNCDFKTLNEVQVKLRIIVDGK 276 (588)
Q Consensus 197 ~vv~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~il~~l~~~~~~~~~~~~l~~~l~~~l~~k 276 (588)
..++|+|+.|+|||||++.+++.....+ + ..++++..+-... .+..+
T Consensus 37 ~~~~l~G~~G~GKTtL~~~i~~~~~~~g--~-~~~~~~~~~~~~~------------------------------~~~~~ 83 (149)
T 2kjq_A 37 QFIYVWGEEGAGKSHLLQAWVAQALEAG--K-NAAYIDAASMPLT------------------------------DAAFE 83 (149)
T ss_dssp SEEEEESSSTTTTCHHHHHHHHHHHTTT--C-CEEEEETTTSCCC------------------------------GGGGG
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHhcC--C-cEEEEcHHHhhHH------------------------------HHHhC
Confidence 5889999999999999999998654322 2 2455554432111 11234
Q ss_pred ceeEEeccccccChhHHHHhhcccCC-CCCCc-EEEEeecc
Q 007817 277 KFLLVLDDVWNENYNLWEILKAPFMA-GARNS-KIIVTTCH 315 (588)
Q Consensus 277 ~~LLVlDdv~~~~~~~~~~l~~~l~~-~~~gs-~ilvTTR~ 315 (588)
.-+|||||+.......-+.+...+.. ...|. .||+||+.
T Consensus 84 ~~lLilDE~~~~~~~~~~~l~~li~~~~~~g~~~iiits~~ 124 (149)
T 2kjq_A 84 AEYLAVDQVEKLGNEEQALLFSIFNRFRNSGKGFLLLGSEY 124 (149)
T ss_dssp CSEEEEESTTCCCSHHHHHHHHHHHHHHHHTCCEEEEEESS
T ss_pred CCEEEEeCccccChHHHHHHHHHHHHHHHcCCcEEEEECCC
Confidence 67899999965433222223222221 11233 48888864
No 66
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.61 E-value=0.00098 Score=68.87 Aligned_cols=178 Identities=18% Similarity=0.122 Sum_probs=91.0
Q ss_pred CceeechhhHHHHHHHHhcCCC-------CCCCCeEEEEEEccCCCcHHHHHHHHHcccccccccccEEEEEEeCCcccH
Q 007817 169 RAVYGRDEDKARMLEMVLSDDP-------TTDANFCVIPIVGMAGAGKTMLAREVYNDRAVQNFKFDVKAWVSVSDDFDV 241 (588)
Q Consensus 169 ~~~vGR~~e~~~l~~~L~~~~~-------~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~wv~v~~~~~~ 241 (588)
.++.|-+..+++|.+.+.-+-. .+-..++-+.++|++|+|||+||+.+++.... .| +.++.+.-.+
T Consensus 172 ~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~~~~~---~~---~~v~~~~l~~- 244 (428)
T 4b4t_K 172 ADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANSTKA---AF---IRVNGSEFVH- 244 (428)
T ss_dssp GGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHHHHTC---EE---EEEEGGGTCC-
T ss_pred HHhccHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHHHHHHHHhCC---Ce---EEEecchhhc-
Confidence 4678889888888776532110 01234567889999999999999999986543 22 2333332111
Q ss_pred HHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhcCCceeEEecccccc-----------C---hhHHHHhhcccC--CCCC
Q 007817 242 LRISRALLESITSTNCDFKTLNEVQVKLRIIVDGKKFLLVLDDVWNE-----------N---YNLWEILKAPFM--AGAR 305 (588)
Q Consensus 242 ~~~~~~il~~l~~~~~~~~~~~~l~~~l~~~l~~k~~LLVlDdv~~~-----------~---~~~~~~l~~~l~--~~~~ 305 (588)
.. -......+...+...-...+++|++|++... + ......+...+. ....
T Consensus 245 -------------~~-~Ge~e~~ir~lF~~A~~~aP~IifiDEiD~i~~~R~~~~~~~~~~~~r~l~~lL~~ldg~~~~~ 310 (428)
T 4b4t_K 245 -------------KY-LGEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGSDREVQRILIELLTQMDGFDQST 310 (428)
T ss_dssp -------------SS-CSHHHHHHHHHHHHHHHTCSEEEEEECTHHHHCSCSSSCSCCCCHHHHHHHHHHHHHHHSCSSC
T ss_pred -------------cc-cchhHHHHHHHHHHHHHcCCCeeechhhhhhhccccCCCCCCChHHHHHHHHHHHHhhCCCCCC
Confidence 00 0011111222222222467899999998421 0 011222222222 1234
Q ss_pred CcEEEEeecchhhhhh-c-c---ccceeeCCCCCHHH-HHHHHHHhhcCCCCCCCChhHHHHHHHHHHHhCCC
Q 007817 306 NSKIIVTTCHSNVASM-M-G---SVEHYNLKLLSDEY-CWSVFVKHAFERRDAGAHQFSKLFRKKIVAKCGGL 372 (588)
Q Consensus 306 gs~ilvTTR~~~v~~~-~-~---~~~~~~l~~L~~~e-a~~Lf~~~a~~~~~~~~~~~~~~i~~~I~~~c~Gl 372 (588)
+..||.||...+.... + . -...+++..++..+ -..+|..+.-.. .......+ ..|++.+.|.
T Consensus 311 ~v~vI~aTN~~~~LD~AllRpGRfd~~I~~p~lPd~~~R~~Il~~~~~~~-~l~~~~dl----~~lA~~t~G~ 378 (428)
T 4b4t_K 311 NVKVIMATNRADTLDPALLRPGRLDRKIEFPSLRDRRERRLIFGTIASKM-SLAPEADL----DSLIIRNDSL 378 (428)
T ss_dssp SEEEEEEESCSSSCCHHHHSSSSEEEEEECCSSCCHHHHHHHHHHHHHSS-CBCTTCCH----HHHHHHTTTC
T ss_pred CEEEEEecCChhhcChhhhcCCcceEEEEcCCCCCHHHHHHHHHHHhcCC-CCCcccCH----HHHHHHCCCC
Confidence 5667777765543221 1 1 22457787665544 445565554221 11122223 3467777765
No 67
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.61 E-value=0.0011 Score=67.62 Aligned_cols=179 Identities=17% Similarity=0.088 Sum_probs=97.3
Q ss_pred CceeechhhHHHHHHHHhcC----CC---CCCCCeEEEEEEccCCCcHHHHHHHHHcccccccccccEEEEEEeCCcccH
Q 007817 169 RAVYGRDEDKARMLEMVLSD----DP---TTDANFCVIPIVGMAGAGKTMLAREVYNDRAVQNFKFDVKAWVSVSDDFDV 241 (588)
Q Consensus 169 ~~~vGR~~e~~~l~~~L~~~----~~---~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~wv~v~~~~~~ 241 (588)
.++.|-++.+++|.+.+.-+ +. .+-..++-+.++|++|.|||.||+.+++.... .| +.++.+.-.+
T Consensus 148 ~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~e~~~---~f---~~v~~s~l~s- 220 (405)
T 4b4t_J 148 DMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHHTDC---KF---IRVSGAELVQ- 220 (405)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHHHHTC---EE---EEEEGGGGSC-
T ss_pred HHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHHhhCC---Cc---eEEEhHHhhc-
Confidence 45778888888777665321 00 01234567889999999999999999996543 22 2333332110
Q ss_pred HHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhcCCceeEEeccccccC--------h------hHHHHhhcccC--CCCC
Q 007817 242 LRISRALLESITSTNCDFKTLNEVQVKLRIIVDGKKFLLVLDDVWNEN--------Y------NLWEILKAPFM--AGAR 305 (588)
Q Consensus 242 ~~~~~~il~~l~~~~~~~~~~~~l~~~l~~~l~~k~~LLVlDdv~~~~--------~------~~~~~l~~~l~--~~~~ 305 (588)
.. -......+.......-...+++|+||+++.-- . .....+...+. ....
T Consensus 221 -------------k~-vGese~~vr~lF~~Ar~~aP~IIFiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~ 286 (405)
T 4b4t_J 221 -------------KY-IGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSTRVEGSGGGDSEVQRTMLELLNQLDGFETSK 286 (405)
T ss_dssp -------------SS-TTHHHHHHHHHHHHHHHTCSEEEEEESSSCCTTSCSCSSSGGGGHHHHHHHHHHHHHHTTTCCC
T ss_pred -------------cc-cchHHHHHHHHHHHHHHhCCceEeeecchhhccCCCCCCCCCcHHHHHHHHHHHHhhhccCCCC
Confidence 00 00111111122222224678999999985310 0 01222322222 1234
Q ss_pred CcEEEEeecchhhhhh-c----cccceeeCCCCCHHHHHHHHHHhhcCCCCCCCChhHHHHHHHHHHHhCCCc
Q 007817 306 NSKIIVTTCHSNVASM-M----GSVEHYNLKLLSDEYCWSVFVKHAFERRDAGAHQFSKLFRKKIVAKCGGLP 373 (588)
Q Consensus 306 gs~ilvTTR~~~v~~~-~----~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~i~~~I~~~c~GlP 373 (588)
+..||.||..++.... + .-...++++.-+.++-.++|..+.-.... ...-.+ ..|++.+.|.-
T Consensus 287 ~V~vIaATNrpd~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~l-~~dvdl----~~lA~~t~G~S 354 (405)
T 4b4t_J 287 NIKIIMATNRLDILDPALLRPGRIDRKIEFPPPSVAARAEILRIHSRKMNL-TRGINL----RKVAEKMNGCS 354 (405)
T ss_dssp CEEEEEEESCSSSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSBC-CSSCCH----HHHHHHCCSCC
T ss_pred CeEEEeccCChhhCCHhHcCCCcCceEEEcCCcCHHHHHHHHHHHhcCCCC-CccCCH----HHHHHHCCCCC
Confidence 5567777765543221 1 23467899999999989999877632211 122223 35777787753
No 68
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.57 E-value=0.0016 Score=67.43 Aligned_cols=179 Identities=14% Similarity=0.095 Sum_probs=97.2
Q ss_pred CceeechhhHHHHHHHHhcCCC-------CCCCCeEEEEEEccCCCcHHHHHHHHHcccccccccccEEEEEEeCCcccH
Q 007817 169 RAVYGRDEDKARMLEMVLSDDP-------TTDANFCVIPIVGMAGAGKTMLAREVYNDRAVQNFKFDVKAWVSVSDDFDV 241 (588)
Q Consensus 169 ~~~vGR~~e~~~l~~~L~~~~~-------~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~wv~v~~~~~~ 241 (588)
.++.|-+..+++|.+.+.-+-. .+-..++-|.++|++|.|||.||+.+++.... . .+.++.+.-.+
T Consensus 181 ~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~e~~~---~---~~~v~~s~l~s- 253 (437)
T 4b4t_L 181 DGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAATIGA---N---FIFSPASGIVD- 253 (437)
T ss_dssp GGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTC---E---EEEEEGGGTCC-
T ss_pred hHhCChHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHHHHHHHHhCC---C---EEEEehhhhcc-
Confidence 4577888888777766532100 01234578889999999999999999996543 2 22333332111
Q ss_pred HHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhcCCceeEEecccccc-----------C---hhHHHHhhcccC--CCCC
Q 007817 242 LRISRALLESITSTNCDFKTLNEVQVKLRIIVDGKKFLLVLDDVWNE-----------N---YNLWEILKAPFM--AGAR 305 (588)
Q Consensus 242 ~~~~~~il~~l~~~~~~~~~~~~l~~~l~~~l~~k~~LLVlDdv~~~-----------~---~~~~~~l~~~l~--~~~~ 305 (588)
.. .......+.......-...+++|++|+++.. + ......++..+. ....
T Consensus 254 -------------k~-~Gese~~ir~~F~~A~~~~P~IifiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~ 319 (437)
T 4b4t_L 254 -------------KY-IGESARIIREMFAYAKEHEPCIIFMDEVDAIGGRRFSEGTSADREIQRTLMELLTQMDGFDNLG 319 (437)
T ss_dssp -------------SS-SSHHHHHHHHHHHHHHHSCSEEEEEECCCSSSCCCSSSCCSSTTHHHHHHHHHHHHHHSSSCTT
T ss_pred -------------cc-chHHHHHHHHHHHHHHhcCCceeeeecccccccccccCCCCcchHHHHHHHHHHHHhhcccCCC
Confidence 00 0011111112222222467899999998531 0 011223333332 2234
Q ss_pred CcEEEEeecchhhhhh-c-c---ccceeeCCCCCHHHHHHHHHHhhcCCCCCCCChhHHHHHHHHHHHhCCCc
Q 007817 306 NSKIIVTTCHSNVASM-M-G---SVEHYNLKLLSDEYCWSVFVKHAFERRDAGAHQFSKLFRKKIVAKCGGLP 373 (588)
Q Consensus 306 gs~ilvTTR~~~v~~~-~-~---~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~i~~~I~~~c~GlP 373 (588)
+..||.||..+..... + . -...++++.-+.++-.++|..+...... .....+ ..|++.+.|.-
T Consensus 320 ~vivI~ATNrp~~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~-~~d~dl----~~lA~~t~G~s 387 (437)
T 4b4t_L 320 QTKIIMATNRPDTLDPALLRPGRLDRKVEIPLPNEAGRLEIFKIHTAKVKK-TGEFDF----EAAVKMSDGFN 387 (437)
T ss_dssp SSEEEEEESSTTSSCTTTTSTTSEEEEECCCCCCHHHHHHHHHHHHHTSCB-CSCCCH----HHHHHTCCSCC
T ss_pred CeEEEEecCCchhhCHHHhCCCccceeeecCCcCHHHHHHHHHHHhcCCCC-CcccCH----HHHHHhCCCCC
Confidence 5677888866543322 1 1 2356888888888888888877633211 112223 34777777653
No 69
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=97.54 E-value=0.00098 Score=70.04 Aligned_cols=179 Identities=16% Similarity=0.099 Sum_probs=96.2
Q ss_pred CceeechhhHHHHHHHHhc---CC---CCCCCCeEEEEEEccCCCcHHHHHHHHHcccccccccccEEEEEEeCCcccHH
Q 007817 169 RAVYGRDEDKARMLEMVLS---DD---PTTDANFCVIPIVGMAGAGKTMLAREVYNDRAVQNFKFDVKAWVSVSDDFDVL 242 (588)
Q Consensus 169 ~~~vGR~~e~~~l~~~L~~---~~---~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~wv~v~~~~~~~ 242 (588)
.+++|.+..++++.+.+.. +. .-+...++-+.|+|++|+|||+||+.+++.... .| +.++.++-...
T Consensus 16 ~di~G~~~~~~~l~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~Laraia~~~~~---~f---~~is~~~~~~~- 88 (476)
T 2ce7_A 16 KDVGGAEEAIEELKEVVEFLKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAGEANV---PF---FHISGSDFVEL- 88 (476)
T ss_dssp GGCCSCHHHHHHHHHHHHHHHCTHHHHTTTCCCCSEEEEECCTTSSHHHHHHHHHHHHTC---CE---EEEEGGGTTTC-
T ss_pred HHhCCcHHHHHHHHHHHHHhhChHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHcCC---Ce---eeCCHHHHHHH-
Confidence 4688988877666665432 10 000112234789999999999999999985432 22 23333321110
Q ss_pred HHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhcCCceeEEeccccccCh--------------hHHHHhhcccCC--CCCC
Q 007817 243 RISRALLESITSTNCDFKTLNEVQVKLRIIVDGKKFLLVLDDVWNENY--------------NLWEILKAPFMA--GARN 306 (588)
Q Consensus 243 ~~~~~il~~l~~~~~~~~~~~~l~~~l~~~l~~k~~LLVlDdv~~~~~--------------~~~~~l~~~l~~--~~~g 306 (588)
+ ...........+.....+.+.+|+||++..... .....+...+.. ...+
T Consensus 89 ---------~-----~g~~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~~~~ 154 (476)
T 2ce7_A 89 ---------F-----VGVGAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDSKEG 154 (476)
T ss_dssp ---------C-----TTHHHHHHHHHHHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCGGGT
T ss_pred ---------H-----hcccHHHHHHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCCCCC
Confidence 0 000111222334444456789999999954210 122333332221 1235
Q ss_pred cEEEEeecchhhhh-h-cc---ccceeeCCCCCHHHHHHHHHHhhcCCCCCCCChhHHHHHHHHHHHhCCCc
Q 007817 307 SKIIVTTCHSNVAS-M-MG---SVEHYNLKLLSDEYCWSVFVKHAFERRDAGAHQFSKLFRKKIVAKCGGLP 373 (588)
Q Consensus 307 s~ilvTTR~~~v~~-~-~~---~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~i~~~I~~~c~GlP 373 (588)
..||.||...+... . .. -...+.++..+.++-.+++..++.... ......+ ..|++.+.|..
T Consensus 155 viVIaaTn~~~~Ld~allR~gRFd~~i~i~~Pd~~~R~~Il~~~~~~~~-l~~~v~l----~~la~~t~G~s 221 (476)
T 2ce7_A 155 IIVMAATNRPDILDPALLRPGRFDKKIVVDPPDMLGRKKILEIHTRNKP-LAEDVNL----EIIAKRTPGFV 221 (476)
T ss_dssp EEEEEEESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSC-BCTTCCH----HHHHHTCTTCC
T ss_pred EEEEEecCChhhhchhhcccCcceeEeecCCCCHHHHHHHHHHHHHhCC-CcchhhH----HHHHHhcCCCc
Confidence 66777776654332 1 11 223788888888888888877663221 1111122 34778888877
No 70
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=97.50 E-value=0.0001 Score=71.82 Aligned_cols=157 Identities=15% Similarity=0.115 Sum_probs=79.9
Q ss_pred CceeechhhHHHHHHHHhcCCCC------CCCCeEEEEEEccCCCcHHHHHHHHHcccccccccccEEEEEEeCCcccHH
Q 007817 169 RAVYGRDEDKARMLEMVLSDDPT------TDANFCVIPIVGMAGAGKTMLAREVYNDRAVQNFKFDVKAWVSVSDDFDVL 242 (588)
Q Consensus 169 ~~~vGR~~e~~~l~~~L~~~~~~------~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~wv~v~~~~~~~ 242 (588)
..++|.+..++.+.+.+..-... +.....-+.|+|++|+|||+||+.+++.... .|- .++.+.-.+
T Consensus 11 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~---~~~---~v~~~~~~~-- 82 (268)
T 2r62_A 11 KDMAGNEEAKEEVVEIVDFLKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAHV---PFF---SMGGSSFIE-- 82 (268)
T ss_dssp TTSSSCTTTHHHHHHHHHHHHCHHHHHHHSCCCCSCCCCBCSSCSSHHHHHHHHHHHHTC---CCC---CCCSCTTTT--
T ss_pred HHhCCcHHHHHHHHHHHHHHHChHHHHHCCCCCCceEEEECCCCCcHHHHHHHHHHHhCC---CEE---EechHHHHH--
Confidence 46889988887777765410000 0011234779999999999999999986532 111 111111100
Q ss_pred HHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhcCCceeEEeccccccChh---------------HHHHhhcccCC---CC
Q 007817 243 RISRALLESITSTNCDFKTLNEVQVKLRIIVDGKKFLLVLDDVWNENYN---------------LWEILKAPFMA---GA 304 (588)
Q Consensus 243 ~~~~~il~~l~~~~~~~~~~~~l~~~l~~~l~~k~~LLVlDdv~~~~~~---------------~~~~l~~~l~~---~~ 304 (588)
.+.+. .......+ +......++.+|+||++...... ....+...+.. ..
T Consensus 83 --------~~~~~--~~~~~~~~---~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~ 149 (268)
T 2r62_A 83 --------MFVGL--GASRVRDL---FETAKKQAPSIIFIDEIDAIGKSRAAGGVVSGNDEREQTLNQLLAEMDGFGSEN 149 (268)
T ss_dssp --------SCSSS--CSSSSSTT---HHHHHHSCSCEEEESCGGGTTC----------CCCSCSSTTTTTTTTTCSSCSC
T ss_pred --------hhcch--HHHHHHHH---HHHHHhcCCeEEEEeChhhhcccccccccCCCchhHHHHHHHHHHHhhCcccCC
Confidence 00000 11111111 22222346789999999543211 11222222221 11
Q ss_pred CCcEEEEeecchhhhh-h-cc---ccceeeCCCCCHHHHHHHHHHhh
Q 007817 305 RNSKIIVTTCHSNVAS-M-MG---SVEHYNLKLLSDEYCWSVFVKHA 346 (588)
Q Consensus 305 ~gs~ilvTTR~~~v~~-~-~~---~~~~~~l~~L~~~ea~~Lf~~~a 346 (588)
....||.||....... . .. -...+.+...+.++-.+++...+
T Consensus 150 ~~v~vi~ttn~~~~ld~~l~r~~Rf~~~i~i~~p~~~~r~~il~~~~ 196 (268)
T 2r62_A 150 APVIVLAATNRPEILDPALMRPGRFDRQVLVDKPDFNGRVEILKVHI 196 (268)
T ss_dssp SCCEEEECBSCCTTSCGGGGSSSSSCCCCBCCCCCTTTHHHHHHHHT
T ss_pred CCEEEEEecCCchhcCHhHcCCCCCCeEEEecCcCHHHHHHHHHHHH
Confidence 2245666776553221 1 11 12457888888888888887665
No 71
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.35 E-value=0.0041 Score=64.34 Aligned_cols=178 Identities=17% Similarity=0.080 Sum_probs=95.3
Q ss_pred CceeechhhHHHHHHHHhc----CCC---CCCCCeEEEEEEccCCCcHHHHHHHHHcccccccccccEEEEEEeCCcccH
Q 007817 169 RAVYGRDEDKARMLEMVLS----DDP---TTDANFCVIPIVGMAGAGKTMLAREVYNDRAVQNFKFDVKAWVSVSDDFDV 241 (588)
Q Consensus 169 ~~~vGR~~e~~~l~~~L~~----~~~---~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~wv~v~~~~~~ 241 (588)
.++.|-++.+++|.+.+.- ++. .+-..++-|.++|++|.|||.||+.+++.... .| +.++.+.-.
T Consensus 209 ~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~e~~~---~f---i~vs~s~L~-- 280 (467)
T 4b4t_H 209 SDVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVANRTDA---TF---IRVIGSELV-- 280 (467)
T ss_dssp SSCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHHHHTC---EE---EEEEGGGGC--
T ss_pred HHhccHHHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHhccCC---Ce---EEEEhHHhh--
Confidence 3577888888888766422 100 01234577889999999999999999986543 22 233332211
Q ss_pred HHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhcCCceeEEeccccccC-----------h---hHHHHhhcccCC--CCC
Q 007817 242 LRISRALLESITSTNCDFKTLNEVQVKLRIIVDGKKFLLVLDDVWNEN-----------Y---NLWEILKAPFMA--GAR 305 (588)
Q Consensus 242 ~~~~~~il~~l~~~~~~~~~~~~l~~~l~~~l~~k~~LLVlDdv~~~~-----------~---~~~~~l~~~l~~--~~~ 305 (588)
... -......+.......-...+++|++|++...- . .....++..+.. ...
T Consensus 281 ------------sk~-vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~ 347 (467)
T 4b4t_H 281 ------------QKY-VGEGARMVRELFEMARTKKACIIFFDEIDAVGGARFDDGAGGDNEVQRTMLELITQLDGFDPRG 347 (467)
T ss_dssp ------------CCS-SSHHHHHHHHHHHHHHHTCSEEEEEECCTTTSBCCSSSSCGGGGHHHHHHHHHHHHHHSSCCTT
T ss_pred ------------ccc-CCHHHHHHHHHHHHHHhcCCceEeecccccccccccCcCCCccHHHHHHHHHHHHHhhccCCCC
Confidence 000 00111111222222234678999999985310 0 011222222221 223
Q ss_pred CcEEEEeecchhhhhh-c----cccceeeCCCCCHHHHHHHHHHhhcCCCCCCCChhHHHHHHHHHHHhCCC
Q 007817 306 NSKIIVTTCHSNVASM-M----GSVEHYNLKLLSDEYCWSVFVKHAFERRDAGAHQFSKLFRKKIVAKCGGL 372 (588)
Q Consensus 306 gs~ilvTTR~~~v~~~-~----~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~i~~~I~~~c~Gl 372 (588)
+..||.||........ + .-...+++...+.++-.++|..+.-.... ...-.+ ..|++.|.|.
T Consensus 348 ~ViVIaATNrpd~LDpALlRpGRFD~~I~i~lPd~~~R~~Ilk~~l~~~~l-~~dvdl----~~LA~~T~Gf 414 (467)
T 4b4t_H 348 NIKVMFATNRPNTLDPALLRPGRIDRKVEFSLPDLEGRANIFRIHSKSMSV-ERGIRW----ELISRLCPNS 414 (467)
T ss_dssp TEEEEEECSCTTSBCHHHHSTTTCCEEECCCCCCHHHHHHHHHHHHTTSCB-CSSCCH----HHHHHHCCSC
T ss_pred cEEEEeCCCCcccCChhhhccccccEEEEeCCcCHHHHHHHHHHHhcCCCC-CCCCCH----HHHHHHCCCC
Confidence 4556677755433221 1 13457888888999888999877632211 112223 3477788775
No 72
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=97.34 E-value=0.0005 Score=74.00 Aligned_cols=165 Identities=15% Similarity=0.126 Sum_probs=78.7
Q ss_pred CceeechhhHHHHHHHHhcCCCCCCCCeEEEEEEccCCCcHHHHHHHHHcccccccccccEEEEEEeCCcccHHHHHHHH
Q 007817 169 RAVYGRDEDKARMLEMVLSDDPTTDANFCVIPIVGMAGAGKTMLAREVYNDRAVQNFKFDVKAWVSVSDDFDVLRISRAL 248 (588)
Q Consensus 169 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i 248 (588)
..++|-+.-...+.+.+.-..-........+.|+|++|+||||||+.++..... .| .-++++...+...+....
T Consensus 81 ~di~G~~~vk~~i~~~~~l~~~~~~~~g~~vll~Gp~GtGKTtlar~ia~~l~~---~~---~~i~~~~~~~~~~~~g~~ 154 (543)
T 3m6a_A 81 EEHHGLEKVKERILEYLAVQKLTKSLKGPILCLAGPPGVGKTSLAKSIAKSLGR---KF---VRISLGGVRDESEIRGHR 154 (543)
T ss_dssp HHCSSCHHHHHHHHHHHHHHHHSSSCCSCEEEEESSSSSSHHHHHHHHHHHHTC---EE---EEECCCC-----------
T ss_pred HHhccHHHHHHHHHHHHHHHHhcccCCCCEEEEECCCCCCHHHHHHHHHHhcCC---Ce---EEEEecccchhhhhhhHH
Confidence 347787777666655432111001113468999999999999999999886532 12 123333222211111110
Q ss_pred HHHhcCCCCCCCCHHHHHHHHHHHhcCCceeEEeccccccChh----HHHHhhcccCCCC---------------CCcEE
Q 007817 249 LESITSTNCDFKTLNEVQVKLRIIVDGKKFLLVLDDVWNENYN----LWEILKAPFMAGA---------------RNSKI 309 (588)
Q Consensus 249 l~~l~~~~~~~~~~~~l~~~l~~~l~~k~~LLVlDdv~~~~~~----~~~~l~~~l~~~~---------------~gs~i 309 (588)
...++. ........+... ....-+|+||++...... ....+...+.... ....+
T Consensus 155 ~~~ig~------~~~~~~~~~~~a-~~~~~vl~lDEid~l~~~~~~~~~~~LL~~ld~~~~~~~~~~~~~~~~~~~~v~i 227 (543)
T 3m6a_A 155 RTYVGA------MPGRIIQGMKKA-GKLNPVFLLDEIDKMSSDFRGDPSSAMLEVLDPEQNSSFSDHYIEETFDLSKVLF 227 (543)
T ss_dssp ---------------CHHHHHHTT-CSSSEEEEEEESSSCC---------CCGGGTCTTTTTBCCCSSSCCCCBCSSCEE
T ss_pred HHHhcc------CchHHHHHHHHh-hccCCEEEEhhhhhhhhhhccCHHHHHHHHHhhhhcceeecccCCeeecccceEE
Confidence 000100 001111112211 223348889999654432 1233444332211 23456
Q ss_pred EEeecchhhhh-h-ccccceeeCCCCCHHHHHHHHHHhh
Q 007817 310 IVTTCHSNVAS-M-MGSVEHYNLKLLSDEYCWSVFVKHA 346 (588)
Q Consensus 310 lvTTR~~~v~~-~-~~~~~~~~l~~L~~~ea~~Lf~~~a 346 (588)
|.||....... . ......+.+.+++.++-..++..+.
T Consensus 228 I~ttN~~~~l~~aL~~R~~vi~~~~~~~~e~~~Il~~~l 266 (543)
T 3m6a_A 228 IATANNLATIPGPLRDRMEIINIAGYTEIEKLEIVKDHL 266 (543)
T ss_dssp EEECSSTTTSCHHHHHHEEEEECCCCCHHHHHHHHHHTH
T ss_pred EeccCccccCCHHHHhhcceeeeCCCCHHHHHHHHHHHH
Confidence 66665443211 1 1223578999999999988887764
No 73
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.32 E-value=0.0015 Score=67.50 Aligned_cols=177 Identities=12% Similarity=0.084 Sum_probs=94.5
Q ss_pred CceeechhhHHHHHHHHhc----CCC---CCCCCeEEEEEEccCCCcHHHHHHHHHcccccccccccEEEEEEeCCcccH
Q 007817 169 RAVYGRDEDKARMLEMVLS----DDP---TTDANFCVIPIVGMAGAGKTMLAREVYNDRAVQNFKFDVKAWVSVSDDFDV 241 (588)
Q Consensus 169 ~~~vGR~~e~~~l~~~L~~----~~~---~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~wv~v~~~~~~ 241 (588)
.++.|-+..+++|.+.+.- ++. .+-..++-|.++|++|.|||.||+.+++.... . .+.++.+.-.
T Consensus 181 ~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~e~~~---~---f~~v~~s~l~-- 252 (434)
T 4b4t_M 181 SDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQTNA---T---FLKLAAPQLV-- 252 (434)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTC---E---EEEEEGGGGC--
T ss_pred HhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHHHhCC---C---EEEEehhhhh--
Confidence 4578888888888776432 110 01234578889999999999999999986533 1 2233332211
Q ss_pred HHHHHHHHHHhcCCCCCCCCHHHHHHH-HHHHhcCCceeEEecccccc-------Ch---h----HHHHhhcccCC--CC
Q 007817 242 LRISRALLESITSTNCDFKTLNEVQVK-LRIIVDGKKFLLVLDDVWNE-------NY---N----LWEILKAPFMA--GA 304 (588)
Q Consensus 242 ~~~~~~il~~l~~~~~~~~~~~~l~~~-l~~~l~~k~~LLVlDdv~~~-------~~---~----~~~~l~~~l~~--~~ 304 (588)
... ....+..... ....-...+++|++|++..- .. . ....+...+.. ..
T Consensus 253 ------------~~~--vGese~~ir~lF~~A~~~aP~IifiDEiDal~~~R~~~~~~~~~~~~~~~~~lL~~ldg~~~~ 318 (434)
T 4b4t_M 253 ------------QMY--IGEGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKSGDREVQRTMLELLNQLDGFSSD 318 (434)
T ss_dssp ------------SSC--SSHHHHHHHHHHHHHHHHCSEEEEEECTHHHHCCCSSGGGGTTHHHHHHHHHHHHHHTTSCSS
T ss_pred ------------hcc--cchHHHHHHHHHHHHHhcCCeEEeecchhhhhhccCCCCCCCchHHHHHHHHHHHHhhccCCC
Confidence 000 0111111111 11122346899999998421 00 0 11223332322 22
Q ss_pred CCcEEEEeecchhhhhh-c----cccceeeCCCCCHHHHHHHHHHhhcCCCCCCCChhHHHHHHHHHHHhCCC
Q 007817 305 RNSKIIVTTCHSNVASM-M----GSVEHYNLKLLSDEYCWSVFVKHAFERRDAGAHQFSKLFRKKIVAKCGGL 372 (588)
Q Consensus 305 ~gs~ilvTTR~~~v~~~-~----~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~i~~~I~~~c~Gl 372 (588)
.+..||.||..++.... + .-...++++.-+.++-.++|..+.-.... ...-.+ ..|++.+.|.
T Consensus 319 ~~ViVIaaTNrp~~LD~AllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~-~~dvdl----~~lA~~t~G~ 386 (434)
T 4b4t_M 319 DRVKVLAATNRVDVLDPALLRSGRLDRKIEFPLPSEDSRAQILQIHSRKMTT-DDDINW----QELARSTDEF 386 (434)
T ss_dssp CSSEEEEECSSCCCCCTTTCSTTSEEEEEECCCCCHHHHHHHHHHHHHHSCB-CSCCCH----HHHHHHCSSC
T ss_pred CCEEEEEeCCCchhcCHhHhcCCceeEEEEeCCcCHHHHHHHHHHHhcCCCC-CCcCCH----HHHHHhCCCC
Confidence 34566667766543321 1 12356888888888888888766532111 111223 3477777764
No 74
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=97.30 E-value=0.00049 Score=77.47 Aligned_cols=135 Identities=16% Similarity=0.204 Sum_probs=73.0
Q ss_pred CceeechhhHHHHHHHHhcCCC---CCCCCeEEEEEEccCCCcHHHHHHHHHcccccccccccEEEEEEeCCcccHHHHH
Q 007817 169 RAVYGRDEDKARMLEMVLSDDP---TTDANFCVIPIVGMAGAGKTMLAREVYNDRAVQNFKFDVKAWVSVSDDFDVLRIS 245 (588)
Q Consensus 169 ~~~vGR~~e~~~l~~~L~~~~~---~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~ 245 (588)
..++|.+..++.+...+..... ........+.++|++|+|||+||+.+.+... ...+-++++.-.....
T Consensus 458 ~~v~g~~~~~~~l~~~i~~~~~g~~~~~~p~~~~ll~G~~GtGKT~la~~la~~l~------~~~~~i~~s~~~~~~~-- 529 (758)
T 1r6b_X 458 MLVFGQDKAIEALTEAIKMARAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKALG------IELLRFDMSEYMERHT-- 529 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHHTTCSCTTSCSEEEEEECSTTSSHHHHHHHHHHHHT------CEEEEEEGGGCSSSSC--
T ss_pred hhccCHHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCcHHHHHHHHHHHhc------CCEEEEechhhcchhh--
Confidence 3578998888888777653211 0122345799999999999999999988542 1233445443221100
Q ss_pred HHHHHHhcCCCCCCCCHHHHHHHHHHHh-cCCceeEEeccccccChhHHHHhhcccCCCC-----------CCcEEEEee
Q 007817 246 RALLESITSTNCDFKTLNEVQVKLRIIV-DGKKFLLVLDDVWNENYNLWEILKAPFMAGA-----------RNSKIIVTT 313 (588)
Q Consensus 246 ~~il~~l~~~~~~~~~~~~l~~~l~~~l-~~k~~LLVlDdv~~~~~~~~~~l~~~l~~~~-----------~gs~ilvTT 313 (588)
...+.+..++....+ ....+...+ +....+|+||++........+.+...+..+. ....||.||
T Consensus 530 ---~~~l~g~~~g~~g~~-~~~~l~~~~~~~~~~vl~lDEi~~~~~~~~~~Ll~~le~~~~~~~~g~~~~~~~~~iI~ts 605 (758)
T 1r6b_X 530 ---VSRLIGAPPGYVGFD-QGGLLTDAVIKHPHAVLLLDEIEKAHPDVFNILLQVMDNGTLTDNNGRKADFRNVVLVMTT 605 (758)
T ss_dssp ---CSSSCCCCSCSHHHH-HTTHHHHHHHHCSSEEEEEETGGGSCHHHHHHHHHHHHHSEEEETTTEEEECTTEEEEEEE
T ss_pred ---HhhhcCCCCCCcCcc-ccchHHHHHHhCCCcEEEEeCccccCHHHHHHHHHHhcCcEEEcCCCCEEecCCeEEEEec
Confidence 001111111100000 011122222 2446799999998777666666665554221 234577777
Q ss_pred cc
Q 007817 314 CH 315 (588)
Q Consensus 314 R~ 315 (588)
..
T Consensus 606 N~ 607 (758)
T 1r6b_X 606 NA 607 (758)
T ss_dssp CS
T ss_pred Cc
Confidence 53
No 75
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.28 E-value=0.0025 Score=65.32 Aligned_cols=177 Identities=12% Similarity=0.059 Sum_probs=94.7
Q ss_pred CceeechhhHHHHHHHHhc----CCC---CCCCCeEEEEEEccCCCcHHHHHHHHHcccccccccccEEEEEEeCCcccH
Q 007817 169 RAVYGRDEDKARMLEMVLS----DDP---TTDANFCVIPIVGMAGAGKTMLAREVYNDRAVQNFKFDVKAWVSVSDDFDV 241 (588)
Q Consensus 169 ~~~vGR~~e~~~l~~~L~~----~~~---~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~wv~v~~~~~~ 241 (588)
.++-|-++.+++|.+.+.- ++. .+-..++-|.++|++|.|||.||+.+++.... .| +.++.+.-.
T Consensus 182 ~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~e~~~---~f---i~v~~s~l~-- 253 (437)
T 4b4t_I 182 SDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQTSA---TF---LRIVGSELI-- 253 (437)
T ss_dssp GGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHHHHTC---EE---EEEESGGGC--
T ss_pred eecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHHHHHHHHHhCC---CE---EEEEHHHhh--
Confidence 4567888887777766532 110 01234577899999999999999999996543 22 223322110
Q ss_pred HHHHHHHHHHhcCCCCCCCCHHHHHH-HHHHHhcCCceeEEeccccccC--------------hhHHHHhhcccC--CCC
Q 007817 242 LRISRALLESITSTNCDFKTLNEVQV-KLRIIVDGKKFLLVLDDVWNEN--------------YNLWEILKAPFM--AGA 304 (588)
Q Consensus 242 ~~~~~~il~~l~~~~~~~~~~~~l~~-~l~~~l~~k~~LLVlDdv~~~~--------------~~~~~~l~~~l~--~~~ 304 (588)
.. .....+.... .+...-...+++|++|+++..- ......+...+. ...
T Consensus 254 ------------sk--~vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~LL~~lDg~~~~ 319 (437)
T 4b4t_I 254 ------------QK--YLGDGPRLCRQIFKVAGENAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDDR 319 (437)
T ss_dssp ------------CS--SSSHHHHHHHHHHHHHHHTCSEEEEEEEESSSSCCCSCSSCSSCCHHHHHHHHHHHHHHHCCCS
T ss_pred ------------hc--cCchHHHHHHHHHHHHHhcCCcEEEEehhhhhcccCCCCCCCccHHHHHHHHHHHHHhhCcCCC
Confidence 00 0111111111 2222224568999999985310 011222222221 123
Q ss_pred CCcEEEEeecchhhhhh-c-c---ccceeeCCCCCHHHHHHHHHHhhcCCCCCCCChhHHHHHHHHHHHhCCC
Q 007817 305 RNSKIIVTTCHSNVASM-M-G---SVEHYNLKLLSDEYCWSVFVKHAFERRDAGAHQFSKLFRKKIVAKCGGL 372 (588)
Q Consensus 305 ~gs~ilvTTR~~~v~~~-~-~---~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~i~~~I~~~c~Gl 372 (588)
.+..||.||...+.... + . -...++++.-+.++-.++|..+.-... ......+ ..|++.+.|.
T Consensus 320 ~~ViVIaATNrpd~LDpALlRpGRfD~~I~v~lPd~~~R~~Il~~~l~~~~-l~~dvdl----~~LA~~T~Gf 387 (437)
T 4b4t_I 320 GDVKVIMATNKIETLDPALIRPGRIDRKILFENPDLSTKKKILGIHTSKMN-LSEDVNL----ETLVTTKDDL 387 (437)
T ss_dssp SSEEEEEEESCSTTCCTTSSCTTTEEEEECCCCCCHHHHHHHHHHHHTTSC-BCSCCCH----HHHHHHCCSC
T ss_pred CCEEEEEeCCChhhcCHHHhcCCceeEEEEcCCcCHHHHHHHHHHHhcCCC-CCCcCCH----HHHHHhCCCC
Confidence 45567777766544322 1 1 234688888888888888887763221 1122223 3467777765
No 76
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=97.26 E-value=0.0013 Score=64.79 Aligned_cols=28 Identities=21% Similarity=0.292 Sum_probs=23.9
Q ss_pred CCeEEEEEEccCCCcHHHHHHHHHcccc
Q 007817 194 ANFCVIPIVGMAGAGKTMLAREVYNDRA 221 (588)
Q Consensus 194 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~ 221 (588)
..+..+.|+|++|+|||+||+.+++...
T Consensus 34 ~~p~~lLl~GppGtGKT~la~aiA~~l~ 61 (293)
T 3t15_A 34 KVPLILGIWGGKGQGKSFQCELVFRKMG 61 (293)
T ss_dssp CCCSEEEEEECTTSCHHHHHHHHHHHHT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 3456888999999999999999998663
No 77
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=97.23 E-value=0.00087 Score=67.30 Aligned_cols=151 Identities=13% Similarity=0.124 Sum_probs=83.2
Q ss_pred ceeechhhHHHHHHHHhcCCCCCCCCeEEEEEEccCCCcHHHHHHHHHcccccccccccEEEEEEeCCcccHHHHHHHHH
Q 007817 170 AVYGRDEDKARMLEMVLSDDPTTDANFCVIPIVGMAGAGKTMLAREVYNDRAVQNFKFDVKAWVSVSDDFDVLRISRALL 249 (588)
Q Consensus 170 ~~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~il 249 (588)
.++|++..++.+...+... .-+.|+|++|+|||+||+.+.+.... .| ..+.+.......++..
T Consensus 28 ~i~g~~~~~~~l~~~l~~~--------~~vll~G~pGtGKT~la~~la~~~~~---~~---~~i~~~~~~~~~~l~g--- 90 (331)
T 2r44_A 28 VVVGQKYMINRLLIGICTG--------GHILLEGVPGLAKTLSVNTLAKTMDL---DF---HRIQFTPDLLPSDLIG--- 90 (331)
T ss_dssp TCCSCHHHHHHHHHHHHHT--------CCEEEESCCCHHHHHHHHHHHHHTTC---CE---EEEECCTTCCHHHHHE---
T ss_pred ceeCcHHHHHHHHHHHHcC--------CeEEEECCCCCcHHHHHHHHHHHhCC---Ce---EEEecCCCCChhhcCC---
Confidence 5789999999988888754 25789999999999999999885422 22 2233332222222211
Q ss_pred HHhcCCCCCCCCHHHHHHHHHHHhcC--CceeEEeccccccChhHHHHhhcccCC-----------CCCCcEEEEeecch
Q 007817 250 ESITSTNCDFKTLNEVQVKLRIIVDG--KKFLLVLDDVWNENYNLWEILKAPFMA-----------GARNSKIIVTTCHS 316 (588)
Q Consensus 250 ~~l~~~~~~~~~~~~l~~~l~~~l~~--k~~LLVlDdv~~~~~~~~~~l~~~l~~-----------~~~gs~ilvTTR~~ 316 (588)
...... ..... .+..+ ...+|++|++...+......+...+.. ......|+.|+...
T Consensus 91 -~~~~~~-~~~~~--------~~~~g~l~~~vl~iDEi~~~~~~~~~~Ll~~l~~~~~~~~g~~~~~~~~~~viat~np~ 160 (331)
T 2r44_A 91 -TMIYNQ-HKGNF--------EVKKGPVFSNFILADEVNRSPAKVQSALLECMQEKQVTIGDTTYPLDNPFLVLATQNPV 160 (331)
T ss_dssp -EEEEET-TTTEE--------EEEECTTCSSEEEEETGGGSCHHHHHHHHHHHHHSEEEETTEEEECCSSCEEEEEECTT
T ss_pred -ceeecC-CCCce--------EeccCcccccEEEEEccccCCHHHHHHHHHHHhcCceeeCCEEEECCCCEEEEEecCCC
Confidence 100000 00000 00001 135899999977665555554443321 12234455555422
Q ss_pred h------hhhh-ccccc-eeeCCCCCHHHHHHHHHHhhc
Q 007817 317 N------VASM-MGSVE-HYNLKLLSDEYCWSVFVKHAF 347 (588)
Q Consensus 317 ~------v~~~-~~~~~-~~~l~~L~~~ea~~Lf~~~a~ 347 (588)
. +... ..... .+.+++.+.++-.+++.+...
T Consensus 161 ~~~~~~~l~~~l~~Rf~~~i~i~~p~~~~~~~il~~~~~ 199 (331)
T 2r44_A 161 EQEGTYPLPEAQVDRFMMKIHLTYLDKESELEVMRRVSN 199 (331)
T ss_dssp CCSCCCCCCHHHHTTSSEEEECCCCCHHHHHHHHHHHHC
T ss_pred cccCcccCCHHHHhheeEEEEcCCCCHHHHHHHHHhccc
Confidence 2 1111 11112 478888899988888887763
No 78
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=97.22 E-value=0.001 Score=75.83 Aligned_cols=135 Identities=16% Similarity=0.241 Sum_probs=74.0
Q ss_pred ceeechhhHHHHHHHHhcCCC---CCCCCeEEEEEEccCCCcHHHHHHHHHcccccccccccEEEEEEeCCcccHHHHHH
Q 007817 170 AVYGRDEDKARMLEMVLSDDP---TTDANFCVIPIVGMAGAGKTMLAREVYNDRAVQNFKFDVKAWVSVSDDFDVLRISR 246 (588)
Q Consensus 170 ~~vGR~~e~~~l~~~L~~~~~---~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~ 246 (588)
.++|.+..++.+...+..... ........+.|+|++|+|||+||+.+.+.....+ ...+.++++.-.... .
T Consensus 559 ~viG~~~a~~~l~~~i~~~~~g~~~~~~p~~~vLl~Gp~GtGKT~lA~~la~~~~~~~---~~~i~i~~~~~~~~~-~-- 632 (854)
T 1qvr_A 559 RVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLFDTE---EAMIRIDMTEYMEKH-A-- 632 (854)
T ss_dssp HSCSCHHHHHHHHHHHHHHGGGCSCSSSCSEEEEEBSCSSSSHHHHHHHHHHHHHSSG---GGEEEECTTTCCSSG-G--
T ss_pred ccCCcHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHhcCCC---CcEEEEechhccchh-H--
Confidence 579999988888887754311 0122346889999999999999999988653221 123345554322110 0
Q ss_pred HHHHHhcCCCC---CCCCHHHHHHHHHHHhcCCceeEEeccccccChhHHHHhhcccCCCC-----------CCcEEEEe
Q 007817 247 ALLESITSTNC---DFKTLNEVQVKLRIIVDGKKFLLVLDDVWNENYNLWEILKAPFMAGA-----------RNSKIIVT 312 (588)
Q Consensus 247 ~il~~l~~~~~---~~~~~~~l~~~l~~~l~~k~~LLVlDdv~~~~~~~~~~l~~~l~~~~-----------~gs~ilvT 312 (588)
...+.+..+ +......+...++. ...-+|+||++...+....+.+...+..+. .+..||+|
T Consensus 633 --~s~l~g~~~~~~G~~~~g~l~~~~~~---~~~~vl~lDEi~~l~~~~~~~Ll~~l~~~~~~~~~g~~vd~~~~iiI~t 707 (854)
T 1qvr_A 633 --VSRLIGAPPGYVGYEEGGQLTEAVRR---RPYSVILFDEIEKAHPDVFNILLQILDDGRLTDSHGRTVDFRNTVIILT 707 (854)
T ss_dssp --GGGC--------------CHHHHHHH---CSSEEEEESSGGGSCHHHHHHHHHHHTTTEECCSSSCCEECTTEEEEEE
T ss_pred --HHHHcCCCCCCcCccccchHHHHHHh---CCCeEEEEecccccCHHHHHHHHHHhccCceECCCCCEeccCCeEEEEe
Confidence 011111110 00001112222221 334699999998777777777766665431 24447777
Q ss_pred ecc
Q 007817 313 TCH 315 (588)
Q Consensus 313 TR~ 315 (588)
|..
T Consensus 708 sn~ 710 (854)
T 1qvr_A 708 SNL 710 (854)
T ss_dssp CCT
T ss_pred cCc
Confidence 764
No 79
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=97.04 E-value=0.0023 Score=59.82 Aligned_cols=83 Identities=25% Similarity=0.262 Sum_probs=49.9
Q ss_pred EEEEEEccCCCcHHHHHHHHHcccccccccccEEEEEEeCCcccHHHHHHHHHHHhcC-----------CC-CCCCCHHH
Q 007817 197 CVIPIVGMAGAGKTMLAREVYNDRAVQNFKFDVKAWVSVSDDFDVLRISRALLESITS-----------TN-CDFKTLNE 264 (588)
Q Consensus 197 ~vv~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~il~~l~~-----------~~-~~~~~~~~ 264 (588)
.++.|+|++|+|||||+..++. . .-..++|++....++...+.. +...++. .. ........
T Consensus 21 ~~~~i~G~~GsGKTtl~~~l~~--~----~~~~v~~i~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (220)
T 2cvh_A 21 VLTQVYGPYASGKTTLALQTGL--L----SGKKVAYVDTEGGFSPERLVQ-MAETRGLNPEEALSRFILFTPSDFKEQRR 93 (220)
T ss_dssp SEEEEECSTTSSHHHHHHHHHH--H----HCSEEEEEESSCCCCHHHHHH-HHHTTTCCHHHHHHHEEEECCTTTSHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH--H----cCCcEEEEECCCCCCHHHHHH-HHHhcCCChHHHhhcEEEEecCCHHHHHH
Confidence 5899999999999999999987 1 234678888776555544432 3222211 11 11111223
Q ss_pred HHHHHHHHhcCCceeEEecccc
Q 007817 265 VQVKLRIIVDGKKFLLVLDDVW 286 (588)
Q Consensus 265 l~~~l~~~l~~k~~LLVlDdv~ 286 (588)
....++..+..++-+||||.+.
T Consensus 94 ~~~~~~~l~~~~~~lliiD~~~ 115 (220)
T 2cvh_A 94 VIGSLKKTVDSNFALVVVDSIT 115 (220)
T ss_dssp HHHHHHHHCCTTEEEEEEECCC
T ss_pred HHHHHHHHhhcCCCEEEEcCcH
Confidence 3444444444456788899874
No 80
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=97.02 E-value=0.00031 Score=69.88 Aligned_cols=44 Identities=20% Similarity=0.200 Sum_probs=31.2
Q ss_pred hhhHHHHHHHHhcCCCCCCCCeEEEEEEccCCCcHHHHHHHHHcccc
Q 007817 175 DEDKARMLEMVLSDDPTTDANFCVIPIVGMAGAGKTMLAREVYNDRA 221 (588)
Q Consensus 175 ~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~ 221 (588)
...++.+.+++..... .....+.|+|++|+|||+||..+++...
T Consensus 134 ~~~~~~~~~~i~~~~~---~~~~~lll~G~~GtGKT~La~aia~~~~ 177 (308)
T 2qgz_A 134 MEAFSAILDFVEQYPS---AEQKGLYLYGDMGIGKSYLLAAMAHELS 177 (308)
T ss_dssp HHHHHHHHHHHHHCSC---SSCCEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccc---cCCceEEEECCCCCCHHHHHHHHHHHHH
Confidence 3345556666654321 1235788999999999999999998665
No 81
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=96.99 E-value=0.0096 Score=66.34 Aligned_cols=180 Identities=12% Similarity=0.075 Sum_probs=97.5
Q ss_pred CceeechhhHHHHHHHHh----cCCC---CCCCCeEEEEEEccCCCcHHHHHHHHHcccccccccccEEEEEEeCCcccH
Q 007817 169 RAVYGRDEDKARMLEMVL----SDDP---TTDANFCVIPIVGMAGAGKTMLAREVYNDRAVQNFKFDVKAWVSVSDDFDV 241 (588)
Q Consensus 169 ~~~vGR~~e~~~l~~~L~----~~~~---~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~wv~v~~~~~~ 241 (588)
.++.|-++.+++|.+++. .++. .+...++-|.++|++|+|||+||+.+++.... + .+.|+.++
T Consensus 204 ~dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LAraiA~elg~---~---~~~v~~~~---- 273 (806)
T 3cf2_A 204 DDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGA---F---FFLINGPE---- 273 (806)
T ss_dssp GGCCSCCTTHHHHHHHHHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHHHHHHTTTTC---E---EEEEEHHH----
T ss_pred hhhcCHHHHHHHHHHHHHHHccCHHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHhCC---e---EEEEEhHH----
Confidence 356788888877777653 2211 12235678899999999999999999986543 2 22333321
Q ss_pred HHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhcCCceeEEeccccccC-----------hhHHHHhhcccCC--CCCCcE
Q 007817 242 LRISRALLESITSTNCDFKTLNEVQVKLRIIVDGKKFLLVLDDVWNEN-----------YNLWEILKAPFMA--GARNSK 308 (588)
Q Consensus 242 ~~~~~~il~~l~~~~~~~~~~~~l~~~l~~~l~~k~~LLVlDdv~~~~-----------~~~~~~l~~~l~~--~~~gs~ 308 (588)
+. ... .......+...+.......+.+|+||++..-- ......+...+.. ...+..
T Consensus 274 ------l~----sk~-~gese~~lr~lF~~A~~~~PsIIfIDEiDal~~~r~~~~~~~~~riv~~LL~~mdg~~~~~~V~ 342 (806)
T 3cf2_A 274 ------IM----SKL-AGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVI 342 (806)
T ss_dssp ------HH----SSC-TTHHHHHHHHHHHHHTTSCSEEEEEESGGGTCCTTTTCCCTTHHHHHHHHHTHHHHCCGGGCEE
T ss_pred ------hh----ccc-chHHHHHHHHHHHHHHHcCCeEEEEehhcccccccCCCCChHHHHHHHHHHHHHhcccccCCEE
Confidence 11 000 01112222333333445678999999985421 0112223222221 122445
Q ss_pred EEEeecchhhh-hhcc----ccceeeCCCCCHHHHHHHHHHhhcCCCCCCCChhHHHHHHHHHHHhCCCch
Q 007817 309 IIVTTCHSNVA-SMMG----SVEHYNLKLLSDEYCWSVFVKHAFERRDAGAHQFSKLFRKKIVAKCGGLPL 374 (588)
Q Consensus 309 ilvTTR~~~v~-~~~~----~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~i~~~I~~~c~GlPL 374 (588)
||.||...+.. ..+. -...+++...+.++-.++|..+...... .....+ ..|++++.|.--
T Consensus 343 VIaaTN~~d~LD~ALrR~GRFd~~I~i~~Pd~~~R~~IL~~~l~~~~~-~~dvdl----~~lA~~T~Gfsg 408 (806)
T 3cf2_A 343 VMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKL-ADDVDL----EQVANETHGHVG 408 (806)
T ss_dssp EEEECSSTTTSCTTTTSTTSSCEEEECCCCCHHHHHHHHHHTCSSSEE-CTTCCH----HHHHHHCCSCCH
T ss_pred EEEecCChhhcCHHHhCCcccceEEecCCCCHHHHHHHHHHHhcCCCC-CcccCH----HHHHHhcCCCCH
Confidence 56666554332 2221 2356889999999888998876532111 122223 357778877643
No 82
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=96.96 E-value=0.00041 Score=68.41 Aligned_cols=67 Identities=13% Similarity=0.169 Sum_probs=44.2
Q ss_pred EEEEEEccCCCcHHHHHHHHHcccccccccccEEEEEEe--CCcccHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhc
Q 007817 197 CVIPIVGMAGAGKTMLAREVYNDRAVQNFKFDVKAWVSV--SDDFDVLRISRALLESITSTNCDFKTLNEVQVKLRIIVD 274 (588)
Q Consensus 197 ~vv~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~wv~v--~~~~~~~~~~~~il~~l~~~~~~~~~~~~l~~~l~~~l~ 274 (588)
+++.|+|++|+|||+||.+++.. .+ . .++|+++ .+..+. ...+.+.....+.+.+.
T Consensus 124 sviLI~GpPGsGKTtLAlqlA~~---~G--~-~VlyIs~~~eE~v~~----------------~~~~le~~l~~i~~~l~ 181 (331)
T 2vhj_A 124 GMVIVTGKGNSGKTPLVHALGEA---LG--G-KDKYATVRFGEPLSG----------------YNTDFNVFVDDIARAML 181 (331)
T ss_dssp EEEEEECSCSSSHHHHHHHHHHH---HH--T-TSCCEEEEBSCSSTT----------------CBCCHHHHHHHHHHHHH
T ss_pred cEEEEEcCCCCCHHHHHHHHHHh---CC--C-CEEEEEecchhhhhh----------------hhcCHHHHHHHHHHHHh
Confidence 57789999999999999999875 11 1 2345666 222110 01345566666666666
Q ss_pred CCceeEEecccc
Q 007817 275 GKKFLLVLDDVW 286 (588)
Q Consensus 275 ~k~~LLVlDdv~ 286 (588)
..+ +||+|++.
T Consensus 182 ~~~-LLVIDsI~ 192 (331)
T 2vhj_A 182 QHR-VIVIDSLK 192 (331)
T ss_dssp HCS-EEEEECCT
T ss_pred hCC-EEEEeccc
Confidence 556 99999994
No 83
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=96.91 E-value=0.00068 Score=63.70 Aligned_cols=113 Identities=12% Similarity=0.012 Sum_probs=64.5
Q ss_pred eEEEEEEccCCCcHHHHHHHHHcccccccccccEEEEEEeCCcccHHHHHHHHHHHhcCCCC--CCCCHHHHHHHHHHHh
Q 007817 196 FCVIPIVGMAGAGKTMLAREVYNDRAVQNFKFDVKAWVSVSDDFDVLRISRALLESITSTNC--DFKTLNEVQVKLRIIV 273 (588)
Q Consensus 196 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~il~~l~~~~~--~~~~~~~l~~~l~~~l 273 (588)
-.++.|+|..|+||||++..+.++....+ .. ++.+....+.. ....++..++.... ......++...+.+.+
T Consensus 12 G~i~litG~mGsGKTT~ll~~~~r~~~~g--~k-Vli~~~~~d~r---~~~~i~srlG~~~~~~~~~~~~~i~~~i~~~~ 85 (223)
T 2b8t_A 12 GWIEFITGPMFAGKTAELIRRLHRLEYAD--VK-YLVFKPKIDTR---SIRNIQSRTGTSLPSVEVESAPEILNYIMSNS 85 (223)
T ss_dssp CEEEEEECSTTSCHHHHHHHHHHHHHHTT--CC-EEEEEECCCGG---GCSSCCCCCCCSSCCEEESSTHHHHHHHHSTT
T ss_pred cEEEEEECCCCCcHHHHHHHHHHHHHhcC--CE-EEEEEeccCch---HHHHHHHhcCCCccccccCCHHHHHHHHHHHh
Confidence 36899999999999999998888765432 22 33343332211 11233344432221 1223345555555544
Q ss_pred cCC-ceeEEeccccccChhHHHHhhcccCCCCCCcEEEEeecchh
Q 007817 274 DGK-KFLLVLDDVWNENYNLWEILKAPFMAGARNSKIIVTTCHSN 317 (588)
Q Consensus 274 ~~k-~~LLVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTTR~~~ 317 (588)
.+. .-+||+|.+..-+.+..+.+.. +.. .|..||+|.+..+
T Consensus 86 ~~~~~dvViIDEaQ~l~~~~ve~l~~-L~~--~gi~Vil~Gl~~d 127 (223)
T 2b8t_A 86 FNDETKVIGIDEVQFFDDRICEVANI-LAE--NGFVVIISGLDKN 127 (223)
T ss_dssp SCTTCCEEEECSGGGSCTHHHHHHHH-HHH--TTCEEEEECCSBC
T ss_pred hCCCCCEEEEecCccCcHHHHHHHHH-HHh--CCCeEEEEecccc
Confidence 444 4499999997654444444433 222 2678999998543
No 84
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=96.86 E-value=0.0028 Score=63.87 Aligned_cols=84 Identities=19% Similarity=0.203 Sum_probs=57.0
Q ss_pred CeEEEEEEccCCCcHHHHHHHHHcccccccccccEEEEEEeCCcccHHHHHHHHHHHhcCCCC-----CCCCHHHHHHHH
Q 007817 195 NFCVIPIVGMAGAGKTMLAREVYNDRAVQNFKFDVKAWVSVSDDFDVLRISRALLESITSTNC-----DFKTLNEVQVKL 269 (588)
Q Consensus 195 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~il~~l~~~~~-----~~~~~~~l~~~l 269 (588)
.-.++.|.|++|+||||||.+++......+ ..++|++....++.. .++.++.... ...+.++....+
T Consensus 60 ~G~i~~I~GppGsGKSTLal~la~~~~~~g---g~VlyId~E~s~~~~-----ra~rlgv~~~~l~i~~~~~~e~~l~~~ 131 (356)
T 3hr8_A 60 RGRIVEIFGQESSGKTTLALHAIAEAQKMG---GVAAFIDAEHALDPV-----YAKNLGVDLKSLLISQPDHGEQALEIV 131 (356)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHHHHHTT---CCEEEEESSCCCCHH-----HHHHHTCCGGGCEEECCSSHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHhcC---CeEEEEecccccchH-----HHHHcCCchhhhhhhhccCHHHHHHHH
Confidence 347999999999999999999988654322 346788887766644 3444543321 234566666666
Q ss_pred HHHhc-CCceeEEecccc
Q 007817 270 RIIVD-GKKFLLVLDDVW 286 (588)
Q Consensus 270 ~~~l~-~k~~LLVlDdv~ 286 (588)
...++ .+.-++|+|.+.
T Consensus 132 ~~l~~~~~~dlvVIDSi~ 149 (356)
T 3hr8_A 132 DELVRSGVVDLIVVDSVA 149 (356)
T ss_dssp HHHHHTSCCSEEEEECTT
T ss_pred HHHhhhcCCCeEEehHhh
Confidence 65554 556799999874
No 85
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=96.83 E-value=0.0029 Score=62.08 Aligned_cols=84 Identities=13% Similarity=0.137 Sum_probs=56.1
Q ss_pred EEEEEccCCCcHHHHHHHHHcccccccccccEEEEEEeCCcccHHHHHHHHHHHhcCCCC-----CCCCHHHH-HHHHHH
Q 007817 198 VIPIVGMAGAGKTMLAREVYNDRAVQNFKFDVKAWVSVSDDFDVLRISRALLESITSTNC-----DFKTLNEV-QVKLRI 271 (588)
Q Consensus 198 vv~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~il~~l~~~~~-----~~~~~~~l-~~~l~~ 271 (588)
++.|.|++|+||||||.+++....... .-..++||+....++.. .+++++.... ...+.++. ...+..
T Consensus 30 iteI~G~pGsGKTtL~Lq~~~~~~~~g-~g~~vlyId~E~s~~~~-----ra~~lGvd~d~llv~~~~~~E~~~l~i~~~ 103 (333)
T 3io5_A 30 LLILAGPSKSFKSNFGLTMVSSYMRQY-PDAVCLFYDSEFGITPA-----YLRSMGVDPERVIHTPVQSLEQLRIDMVNQ 103 (333)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHHHHC-TTCEEEEEESSCCCCHH-----HHHHTTCCGGGEEEEECSBHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhcC-CCceEEEEeccchhhHH-----HHHHhCCCHHHeEEEcCCCHHHHHHHHHHH
Confidence 789999999999999998887654321 12468899988887753 2566665432 23455555 333332
Q ss_pred H--h-cCCceeEEeccccc
Q 007817 272 I--V-DGKKFLLVLDDVWN 287 (588)
Q Consensus 272 ~--l-~~k~~LLVlDdv~~ 287 (588)
. + .+++-|||+|-+..
T Consensus 104 l~~i~~~~~~lvVIDSI~a 122 (333)
T 3io5_A 104 LDAIERGEKVVVFIDSLGN 122 (333)
T ss_dssp HHTCCTTCCEEEEEECSTT
T ss_pred HHHhhccCceEEEEecccc
Confidence 2 2 45678999999843
No 86
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=96.81 E-value=0.009 Score=61.00 Aligned_cols=24 Identities=29% Similarity=0.533 Sum_probs=21.5
Q ss_pred EEEEEEccCCCcHHHHHHHHHccc
Q 007817 197 CVIPIVGMAGAGKTMLAREVYNDR 220 (588)
Q Consensus 197 ~vv~I~G~gGiGKTtLA~~v~~~~ 220 (588)
..+.|+|++|+|||+||+.+++..
T Consensus 73 ~~ill~Gp~GtGKT~la~~la~~l 96 (376)
T 1um8_A 73 SNILLIGPTGSGKTLMAQTLAKHL 96 (376)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHT
T ss_pred CCEEEECCCCCCHHHHHHHHHHHh
Confidence 468899999999999999999854
No 87
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=96.77 E-value=0.0041 Score=70.07 Aligned_cols=157 Identities=15% Similarity=0.125 Sum_probs=84.7
Q ss_pred CceeechhhHHHHHHHHhcC----C---CCCCCCeEEEEEEccCCCcHHHHHHHHHcccccccccccEEEEEEeCCcccH
Q 007817 169 RAVYGRDEDKARMLEMVLSD----D---PTTDANFCVIPIVGMAGAGKTMLAREVYNDRAVQNFKFDVKAWVSVSDDFDV 241 (588)
Q Consensus 169 ~~~vGR~~e~~~l~~~L~~~----~---~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~wv~v~~~~~~ 241 (588)
..++|.+..+++|.+++... . .-.-.....+.|+|++|+||||||+.+++.... .| +.++.+.
T Consensus 204 ~di~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLarala~~l~~---~~---i~v~~~~---- 273 (806)
T 1ypw_A 204 DDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGA---FF---FLINGPE---- 273 (806)
T ss_dssp GGCCSCSGGGGHHHHHHHHHHHCGGGGTSSCCCCCCEEEECSCTTSSHHHHHHHHHHTTTC---EE---EEEEHHH----
T ss_pred HHhCChHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCC---cE---EEEEchH----
Confidence 46899999998888887531 0 001123457899999999999999999885421 22 3333211
Q ss_pred HHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhcCCceeEEeccccccC-----------hhHHHHhhcccCC--CCCCcE
Q 007817 242 LRISRALLESITSTNCDFKTLNEVQVKLRIIVDGKKFLLVLDDVWNEN-----------YNLWEILKAPFMA--GARNSK 308 (588)
Q Consensus 242 ~~~~~~il~~l~~~~~~~~~~~~l~~~l~~~l~~k~~LLVlDdv~~~~-----------~~~~~~l~~~l~~--~~~gs~ 308 (588)
+.... .......+...+.......+.++++|++.... ......+...+.. ...+..
T Consensus 274 ----------l~~~~-~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~Ll~ll~g~~~~~~v~ 342 (806)
T 1ypw_A 274 ----------IMSKL-AGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVI 342 (806)
T ss_dssp ----------HSSSS-TTHHHHHHHHHHHHHHHHCSEEEEEESGGGTSCTTSCCCSHHHHHHHHHHHHHHHSSCTTSCCE
T ss_pred ----------hhhhh-hhhHHHHHHHHHHHHHhcCCcEEEeccHHHhhhccccccchHHHHHHHHHHHHhhhhcccccEE
Confidence 10000 00011122223333334567899999984311 0111222222211 123445
Q ss_pred EEEeecchhhh-hhcc----ccceeeCCCCCHHHHHHHHHHhh
Q 007817 309 IIVTTCHSNVA-SMMG----SVEHYNLKLLSDEYCWSVFVKHA 346 (588)
Q Consensus 309 ilvTTR~~~v~-~~~~----~~~~~~l~~L~~~ea~~Lf~~~a 346 (588)
+|.||...... ..+. -...+.+...+.++-.+++...+
T Consensus 343 vI~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~~ 385 (806)
T 1ypw_A 343 VMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHT 385 (806)
T ss_dssp EEEECSCTTTSCTTTTSTTSSCEEECCCCCCHHHHHHHHHHTT
T ss_pred EecccCCchhcCHHHhcccccccccccCCCCHHHHHHHHHHHH
Confidence 66666554222 1111 12457888889999999988765
No 88
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=96.76 E-value=0.017 Score=61.03 Aligned_cols=176 Identities=15% Similarity=0.099 Sum_probs=92.1
Q ss_pred CCceeechhhHHHHHHHHh---cCCC---CCCCCeEEEEEEccCCCcHHHHHHHHHcccccccccccEEEEEEeCCcccH
Q 007817 168 ERAVYGRDEDKARMLEMVL---SDDP---TTDANFCVIPIVGMAGAGKTMLAREVYNDRAVQNFKFDVKAWVSVSDDFDV 241 (588)
Q Consensus 168 ~~~~vGR~~e~~~l~~~L~---~~~~---~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~wv~v~~~~~~ 241 (588)
-.+++|.+..+.++.+... .... -+-.-.+-+.|+|++|+|||+||+.++..... . .+.++.++-..
T Consensus 30 f~dv~G~~~~k~~l~~lv~~l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLaraIa~~~~~---~---~i~i~g~~~~~- 102 (499)
T 2dhr_A 30 FKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARV---P---FITASGSDFVE- 102 (499)
T ss_dssp TTSSCSCHHHHHHHHHHHHHHHCGGGTTTTSCCCCSEEEEECSSSSSHHHHHHHHHHHTTC---C---EEEEEGGGGTS-
T ss_pred HHHcCCcHHHHHHHHHHHHHhhchhhhhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCC---C---EEEEehhHHHH-
Confidence 3568898877666655442 2110 00011223899999999999999999986431 1 23333322100
Q ss_pred HHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhc----CCceeEEeccccccC----------h----hHHHHhhcccCCC
Q 007817 242 LRISRALLESITSTNCDFKTLNEVQVKLRIIVD----GKKFLLVLDDVWNEN----------Y----NLWEILKAPFMAG 303 (588)
Q Consensus 242 ~~~~~~il~~l~~~~~~~~~~~~l~~~l~~~l~----~k~~LLVlDdv~~~~----------~----~~~~~l~~~l~~~ 303 (588)
.........+...++ ..+.++++|++.... . .....+...+..+
T Consensus 103 ------------------~~~g~~~~~v~~lfq~a~~~~p~il~IDEId~l~~~r~~~~~~~~~e~~~~l~~LL~~Ldg~ 164 (499)
T 2dhr_A 103 ------------------MFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGF 164 (499)
T ss_dssp ------------------SCTTHHHHHHHHHTTTSSSSSSCEEEEECGGGTCCCSSSSTTTSSHHHHHHHHHHHHHGGGC
T ss_pred ------------------hhhhhHHHHHHHHHHHHHhcCCCEEEEehHHHHHHhhccCcCCCcHHHHHHHHHHHHHhccc
Confidence 001111223333333 235799999995321 1 1123333333322
Q ss_pred --CCCcEEEEeecchhhhhh-c----cccceeeCCCCCHHHHHHHHHHhhcCCCCCCCChhHHHHHHHHHHHhCCCc
Q 007817 304 --ARNSKIIVTTCHSNVASM-M----GSVEHYNLKLLSDEYCWSVFVKHAFERRDAGAHQFSKLFRKKIVAKCGGLP 373 (588)
Q Consensus 304 --~~gs~ilvTTR~~~v~~~-~----~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~i~~~I~~~c~GlP 373 (588)
..+..++.||..+..... + .-...+.++..+.++-.+++..++-.. .......+ ..|+..+.|+.
T Consensus 165 ~~~~~viviAatn~p~~LD~aLlr~gRfdr~i~i~~Pd~~~R~~IL~~~~~~~-~l~~dv~l----~~lA~~t~G~~ 236 (499)
T 2dhr_A 165 EKDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGK-PLAEDVDL----ALLAKRTPGFV 236 (499)
T ss_dssp CSSCCCEEEECCSCGGGSCTTTSSTTSSCCEEECCCCCHHHHHHHHHHTTSSS-CCCCSSTT----HHHHTTSCSCC
T ss_pred ccCccEEEEEecCChhhcCcccccccccceEEecCCCCHHHHHHHHHHHHhcC-CCChHHHH----HHHHHhcCCCC
Confidence 233456666666654321 1 123578899999998888888765321 11111122 24677777765
No 89
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=96.76 E-value=0.023 Score=54.29 Aligned_cols=157 Identities=17% Similarity=0.081 Sum_probs=77.2
Q ss_pred CceeechhhHHHHHHHHhcCCC------CCCCCeEEEEEEccCCCcHHHHHHHHHcccccccccccEEEEEEeCCcccHH
Q 007817 169 RAVYGRDEDKARMLEMVLSDDP------TTDANFCVIPIVGMAGAGKTMLAREVYNDRAVQNFKFDVKAWVSVSDDFDVL 242 (588)
Q Consensus 169 ~~~vGR~~e~~~l~~~L~~~~~------~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~wv~v~~~~~~~ 242 (588)
.+++|.+..+.++.+....-.. -+-.-.+-+.|+|++|+|||||++.+++.... . .+.++..
T Consensus 16 ~~i~g~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~g~ll~G~~G~GKTtl~~~i~~~~~~---~---~i~~~~~------ 83 (254)
T 1ixz_A 16 KDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARV---P---FITASGS------ 83 (254)
T ss_dssp GGCCSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCSEEEEECCTTSSHHHHHHHHHHHTTC---C---EEEEEHH------
T ss_pred HHhCCcHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCCCCHHHHHHHHHHHhCC---C---EEEeeHH------
Confidence 4678887665555444321100 00001122899999999999999999986431 1 2222211
Q ss_pred HHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhcCCceeEEeccccccC----------hhH----HHHhhcccCCCC--CC
Q 007817 243 RISRALLESITSTNCDFKTLNEVQVKLRIIVDGKKFLLVLDDVWNEN----------YNL----WEILKAPFMAGA--RN 306 (588)
Q Consensus 243 ~~~~~il~~l~~~~~~~~~~~~l~~~l~~~l~~k~~LLVlDdv~~~~----------~~~----~~~l~~~l~~~~--~g 306 (588)
.+ .... . ......+...++..-...+.++++|++.... ... ...+...+..+. ..
T Consensus 84 ~~----~~~~---~--~~~~~~i~~~~~~~~~~~~~i~~~Deid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~g~~~~~~ 154 (254)
T 1ixz_A 84 DF----VEMF---V--GVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTA 154 (254)
T ss_dssp HH----HHSC---T--THHHHHHHHHHHHHTTSSSEEEEEETHHHHHC---------CHHHHHHHHHHHHHHHTCCTTCC
T ss_pred HH----HHHH---h--hHHHHHHHHHHHHHHhcCCeEEEehhhhhhhcccCccccccchHHHHHHHHHHHHHhCCCCCCC
Confidence 11 1100 0 0001111112222222456899999994210 011 122332333222 22
Q ss_pred cEEEEeecchhhhhh-c----cccceeeCCCCCHHHHHHHHHHhh
Q 007817 307 SKIIVTTCHSNVASM-M----GSVEHYNLKLLSDEYCWSVFVKHA 346 (588)
Q Consensus 307 s~ilvTTR~~~v~~~-~----~~~~~~~l~~L~~~ea~~Lf~~~a 346 (588)
.-++.||..+..... . .-...+.++..+.++-.+++..++
T Consensus 155 ~i~~a~t~~p~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~ 199 (254)
T 1ixz_A 155 IVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHA 199 (254)
T ss_dssp EEEEEEESCGGGSCGGGGSTTSSCEEEECCSCCHHHHHHHHHHHH
T ss_pred EEEEEccCCchhCCHHHcCCCcCCeEEeeCCcCHHHHHHHHHHHH
Confidence 344556655544322 1 123468888888888888887665
No 90
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=96.70 E-value=0.019 Score=50.97 Aligned_cols=20 Identities=45% Similarity=0.677 Sum_probs=18.8
Q ss_pred EEEEEEccCCCcHHHHHHHH
Q 007817 197 CVIPIVGMAGAGKTMLAREV 216 (588)
Q Consensus 197 ~vv~I~G~gGiGKTtLA~~v 216 (588)
.+|+|.|++|+||||+|+.+
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 47899999999999999999
No 91
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=96.67 E-value=0.016 Score=56.27 Aligned_cols=126 Identities=13% Similarity=0.104 Sum_probs=66.7
Q ss_pred EEEEccCCCcHHHHHHHHHcccccccccccEEEEEEeCCcccHHHHHHHHHHHhcCCCCCCCCHHHHHHH-HHHHhcCCc
Q 007817 199 IPIVGMAGAGKTMLAREVYNDRAVQNFKFDVKAWVSVSDDFDVLRISRALLESITSTNCDFKTLNEVQVK-LRIIVDGKK 277 (588)
Q Consensus 199 v~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~il~~l~~~~~~~~~~~~l~~~-l~~~l~~k~ 277 (588)
+.|+|++|+||||||+.++..... ..+.+...+-.+. ........... ....-...+
T Consensus 47 vlL~Gp~GtGKTtLakala~~~~~------~~i~i~g~~l~~~----------------~~~~~~~~i~~vf~~a~~~~p 104 (274)
T 2x8a_A 47 VLLAGPPGCGKTLLAKAVANESGL------NFISVKGPELLNM----------------YVGESERAVRQVFQRAKNSAP 104 (274)
T ss_dssp EEEESSTTSCHHHHHHHHHHHTTC------EEEEEETTTTCSS----------------TTHHHHHHHHHHHHHHHHTCS
T ss_pred EEEECCCCCcHHHHHHHHHHHcCC------CEEEEEcHHHHhh----------------hhhHHHHHHHHHHHHHHhcCC
Confidence 899999999999999999985432 2334433221100 00000111111 111113457
Q ss_pred eeEEeccccccC-----------hhHHHHhhcccCCC--CCCcEEEEeecchhhhhhc-----cccceeeCCCCCHHHHH
Q 007817 278 FLLVLDDVWNEN-----------YNLWEILKAPFMAG--ARNSKIIVTTCHSNVASMM-----GSVEHYNLKLLSDEYCW 339 (588)
Q Consensus 278 ~LLVlDdv~~~~-----------~~~~~~l~~~l~~~--~~gs~ilvTTR~~~v~~~~-----~~~~~~~l~~L~~~ea~ 339 (588)
.++++|++.... ......+...+..+ ....-++.+|..+...... .-...+.++..+.++-.
T Consensus 105 ~i~~~Deid~~~~~r~~~~~~~~~~~~~~~l~~Lsgg~~~~~~i~ia~tn~p~~LD~al~r~gRfd~~i~~~~P~~~~r~ 184 (274)
T 2x8a_A 105 CVIFFDEVDALCPRRSDRETGASVRVVNQLLTEMDGLEARQQVFIMAATNRPDIIDPAILRPGRLDKTLFVGLPPPADRL 184 (274)
T ss_dssp EEEEEETCTTTCC---------CTTHHHHHHHHHHTCCSTTCEEEEEEESCGGGSCHHHHSTTSSCEEEECCSCCHHHHH
T ss_pred CeEeeehhhhhhcccCCCcchHHHHHHHHHHHhhhcccccCCEEEEeecCChhhCCHhhcCcccCCeEEEeCCcCHHHHH
Confidence 899999985311 01112222223222 1234456666666543321 12356788888888888
Q ss_pred HHHHHhh
Q 007817 340 SVFVKHA 346 (588)
Q Consensus 340 ~Lf~~~a 346 (588)
++|..+.
T Consensus 185 ~il~~~~ 191 (274)
T 2x8a_A 185 AILKTIT 191 (274)
T ss_dssp HHHHHHT
T ss_pred HHHHHHH
Confidence 8888765
No 92
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=96.62 E-value=0.0047 Score=58.05 Aligned_cols=114 Identities=18% Similarity=0.057 Sum_probs=60.8
Q ss_pred EEEEEEccCCCcHHHHHHHHHcccccccccccEEEEEEeCCcccHHHHHHHHHHHhcCCCC-------------------
Q 007817 197 CVIPIVGMAGAGKTMLAREVYNDRAVQNFKFDVKAWVSVSDDFDVLRISRALLESITSTNC------------------- 257 (588)
Q Consensus 197 ~vv~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~il~~l~~~~~------------------- 257 (588)
.+++|+|++|+|||||+..++......+ ..++|+..... ...+...+. .++....
T Consensus 24 ~~~~i~G~~GsGKTtl~~~l~~~~~~~~---~~v~~~~~~~~--~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (235)
T 2w0m_A 24 FFIALTGEPGTGKTIFSLHFIAKGLRDG---DPCIYVTTEES--RDSIIRQAK-QFNWDFEEYIEKKLIIIDALMKEKED 97 (235)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHHHT---CCEEEEESSSC--HHHHHHHHH-HTTCCCGGGBTTTEEEEECCC----C
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHHHCC---CeEEEEEcccC--HHHHHHHHH-HhcchHHHHhhCCEEEEeccccccCc
Confidence 5899999999999999999986543222 24566665442 333333322 3321110
Q ss_pred ----CCCCHHHHHHHHHHHhc-CCce--eEEecccccc---ChhHHHHhhcccCC--CCCCcEEEEeecch
Q 007817 258 ----DFKTLNEVQVKLRIIVD-GKKF--LLVLDDVWNE---NYNLWEILKAPFMA--GARNSKIIVTTCHS 316 (588)
Q Consensus 258 ----~~~~~~~l~~~l~~~l~-~k~~--LLVlDdv~~~---~~~~~~~l~~~l~~--~~~gs~ilvTTR~~ 316 (588)
...+..++...+...+. .++- +||+|..... +......+...+.. ...|..||++|...
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~~~~d~~~~~~~~~~l~~~~~~~~~~vi~~~h~~ 168 (235)
T 2w0m_A 98 QWSLVNLTPEELVNKVIEAKQKLGYGKARLVIDSVSALFLDKPAMARKISYYLKRVLNKWNFTIYATSQYA 168 (235)
T ss_dssp TTBCSSCCHHHHHHHHHHHHHHHCSSCEEEEEETGGGGSSSCGGGHHHHHHHHHHHHHHTTEEEEEEEC--
T ss_pred eeeecCCCHHHHHHHHHHHHHhhCCCceEEEEECchHhhcCCHHHHHHHHHHHHHHHHhCCCeEEEEeccC
Confidence 01145555555554442 2444 9999998521 22222222222221 12467888888764
No 93
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=96.56 E-value=0.015 Score=58.54 Aligned_cols=157 Identities=12% Similarity=-0.036 Sum_probs=98.6
Q ss_pred eEEEEEEccCCCcHHHHHHHHHcccccccccccEEEEEEeCCcccHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHH-hc
Q 007817 196 FCVIPIVGMAGAGKTMLAREVYNDRAVQNFKFDVKAWVSVSDDFDVLRISRALLESITSTNCDFKTLNEVQVKLRII-VD 274 (588)
Q Consensus 196 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~il~~l~~~~~~~~~~~~l~~~l~~~-l~ 274 (588)
.++..++|+.|.||++.+..+.+..... .|+....+.+... .+..++...+... +-
T Consensus 18 ~~~yl~~G~e~~~~~~~~~~l~~~~~~~--~~~~~~~~~~~~~---------------------~~~~~l~~~~~~~plf 74 (343)
T 1jr3_D 18 RAAYLLLGNDPLLLQESQDAVRQVAAAQ--GFEEHHTFSIDPN---------------------TDWNAIFSLCQAMSLF 74 (343)
T ss_dssp CSEEEEEESCHHHHHHHHHHHHHHHHHH--TCCEEEEEECCTT---------------------CCHHHHHHHHHHHHHC
T ss_pred CcEEEEECCcHHHHHHHHHHHHHHHHhC--CCCeeEEEEecCC---------------------CCHHHHHHHhcCcCCc
Confidence 4689999999999999999888754322 2322111222222 2333333333221 34
Q ss_pred CCceeEEeccccc-cChhHHHHhhcccCCCCCCcEEEEeecc-------hhhhhhc-cccceeeCCCCCHHHHHHHHHHh
Q 007817 275 GKKFLLVLDDVWN-ENYNLWEILKAPFMAGARNSKIIVTTCH-------SNVASMM-GSVEHYNLKLLSDEYCWSVFVKH 345 (588)
Q Consensus 275 ~k~~LLVlDdv~~-~~~~~~~~l~~~l~~~~~gs~ilvTTR~-------~~v~~~~-~~~~~~~l~~L~~~ea~~Lf~~~ 345 (588)
+++-++|+|+++. .+...++.+...+....+++.+|++|.. ..+...+ .....++..+++.++....+.+.
T Consensus 75 ~~~kvvii~~~~~kl~~~~~~aLl~~le~p~~~~~~il~~~~~~~~~~~~k~~~~i~sr~~~~~~~~l~~~~l~~~l~~~ 154 (343)
T 1jr3_D 75 ASRQTLLLLLPENGPNAAINEQLLTLTGLLHDDLLLIVRGNKLSKAQENAAWFTALANRSVQVTCQTPEQAQLPRWVAAR 154 (343)
T ss_dssp CSCEEEEEECCSSCCCTTHHHHHHHHHTTCBTTEEEEEEESCCCTTTTTSHHHHHHTTTCEEEEECCCCTTHHHHHHHHH
T ss_pred cCCeEEEEECCCCCCChHHHHHHHHHHhcCCCCeEEEEEcCCCChhhHhhHHHHHHHhCceEEEeeCCCHHHHHHHHHHH
Confidence 6677889999876 5556777777777655567777776643 1233332 23467899999999999888877
Q ss_pred hcCCCCCCCChhHHHHHHHHHHHhCCCchHHHHh
Q 007817 346 AFERRDAGAHQFSKLFRKKIVAKCGGLPLAVSTL 379 (588)
Q Consensus 346 a~~~~~~~~~~~~~~i~~~I~~~c~GlPLai~~~ 379 (588)
+-..+.. ...+.+..|++.++|.+..+...
T Consensus 155 ~~~~g~~----i~~~a~~~l~~~~~gdl~~~~~e 184 (343)
T 1jr3_D 155 AKQLNLE----LDDAANQVLCYCYEGNLLALAQA 184 (343)
T ss_dssp HHHTTCE----ECHHHHHHHHHSSTTCHHHHHHH
T ss_pred HHHcCCC----CCHHHHHHHHHHhchHHHHHHHH
Confidence 6332211 12234567899999988877653
No 94
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=96.53 E-value=0.0068 Score=61.47 Aligned_cols=82 Identities=17% Similarity=0.217 Sum_probs=55.9
Q ss_pred EEEEEEccCCCcHHHHHHHHHcccccccccccEEEEEEeCCcccHHHHHHHHHHHhcCCCC-----CCCCHHHHHHHHHH
Q 007817 197 CVIPIVGMAGAGKTMLAREVYNDRAVQNFKFDVKAWVSVSDDFDVLRISRALLESITSTNC-----DFKTLNEVQVKLRI 271 (588)
Q Consensus 197 ~vv~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~il~~l~~~~~-----~~~~~~~l~~~l~~ 271 (588)
.++.|.|.+|+||||||.+++......+ ..++|++....++.. .+..++.... ...+.+++...+..
T Consensus 75 ~li~I~G~pGsGKTtlal~la~~~~~~g---~~vlyi~~E~s~~~~-----~a~~~g~d~~~l~i~~~~~~e~~l~~l~~ 146 (366)
T 1xp8_A 75 RITEIYGPESGGKTTLALAIVAQAQKAG---GTCAFIDAEHALDPV-----YARALGVNTDELLVSQPDNGEQALEIMEL 146 (366)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHHHTT---CCEEEEESSCCCCHH-----HHHHTTCCGGGCEEECCSSHHHHHHHHHH
T ss_pred cEEEEEcCCCCChHHHHHHHHHHHHHCC---CeEEEEECCCChhHH-----HHHHcCCCHHHceeecCCcHHHHHHHHHH
Confidence 5888999999999999999887654322 368899998776644 2344443211 23456666666666
Q ss_pred Hhc-CCceeEEecccc
Q 007817 272 IVD-GKKFLLVLDDVW 286 (588)
Q Consensus 272 ~l~-~k~~LLVlDdv~ 286 (588)
..+ +..-+||+|.+.
T Consensus 147 l~~~~~~~lVVIDsl~ 162 (366)
T 1xp8_A 147 LVRSGAIDVVVVDSVA 162 (366)
T ss_dssp HHTTTCCSEEEEECTT
T ss_pred HHhcCCCCEEEEeChH
Confidence 654 445699999874
No 95
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=96.50 E-value=0.019 Score=55.88 Aligned_cols=180 Identities=16% Similarity=0.072 Sum_probs=86.9
Q ss_pred CCceeechhhHHHHHHHHhcCCC------CCCCCeEEEEEEccCCCcHHHHHHHHHcccccccccccEEEEEEeCCcccH
Q 007817 168 ERAVYGRDEDKARMLEMVLSDDP------TTDANFCVIPIVGMAGAGKTMLAREVYNDRAVQNFKFDVKAWVSVSDDFDV 241 (588)
Q Consensus 168 ~~~~vGR~~e~~~l~~~L~~~~~------~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~wv~v~~~~~~ 241 (588)
-.+++|.+..+.++.+....-.. -+-.-.+-+.|+|++|+|||||++.++..... . .+.++..
T Consensus 39 ~~~i~g~~~~~~~l~~l~~~~~~~~~l~~~~~~~~~gvll~Gp~GtGKTtl~~~i~~~~~~---~---~i~~~~~----- 107 (278)
T 1iy2_A 39 FKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARV---P---FITASGS----- 107 (278)
T ss_dssp GGGSSSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCCEEEEECCTTSSHHHHHHHHHHHTTC---C---EEEEEHH-----
T ss_pred HHHhCChHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCcChHHHHHHHHHHHcCC---C---EEEecHH-----
Confidence 34678888766665544321100 00001122889999999999999999986531 1 2223221
Q ss_pred HHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhcCCceeEEecccccc-----------C---hhHHHHhhcccCCCCC--
Q 007817 242 LRISRALLESITSTNCDFKTLNEVQVKLRIIVDGKKFLLVLDDVWNE-----------N---YNLWEILKAPFMAGAR-- 305 (588)
Q Consensus 242 ~~~~~~il~~l~~~~~~~~~~~~l~~~l~~~l~~k~~LLVlDdv~~~-----------~---~~~~~~l~~~l~~~~~-- 305 (588)
.+ ..... ......+...++..-...+.++++|++... . ......+...+..+..
T Consensus 108 -~~----~~~~~-----~~~~~~i~~~~~~~~~~~~~i~~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~lsgg~~~~ 177 (278)
T 1iy2_A 108 -DF----VEMFV-----GVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDT 177 (278)
T ss_dssp -HH----HHSTT-----THHHHHHHHHHHHHHTSCSEEEEEETHHHHHCC--------CHHHHHHHHHHHHHHTTCCTTC
T ss_pred -HH----HHHHh-----hHHHHHHHHHHHHHHhcCCcEEehhhhHhhhcccccccCCcchHHHHHHHHHHHHHhCCCCCC
Confidence 11 11000 000011111222222345689999999421 0 0111223222332222
Q ss_pred CcEEEEeecchhhhhh--c---cccceeeCCCCCHHHHHHHHHHhhcCCCCCCCChhHHHHHHHHHHHhCCCc
Q 007817 306 NSKIIVTTCHSNVASM--M---GSVEHYNLKLLSDEYCWSVFVKHAFERRDAGAHQFSKLFRKKIVAKCGGLP 373 (588)
Q Consensus 306 gs~ilvTTR~~~v~~~--~---~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~i~~~I~~~c~GlP 373 (588)
...++.||..+..... . .-...+.+...+.++-.+++..++-.. .......+ ..++..+.|..
T Consensus 178 ~~i~~a~t~~p~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~-~~~~~~~~----~~la~~~~G~~ 245 (278)
T 1iy2_A 178 AIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGK-PLAEDVDL----ALLAKRTPGFV 245 (278)
T ss_dssp CEEEEEEESCTTSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTS-CBCTTCCH----HHHHHTCTTCC
T ss_pred CEEEEEecCCchhCCHhHcCCCcCCeEEEeCCcCHHHHHHHHHHHHccC-CCCcccCH----HHHHHHcCCCC
Confidence 2344455655544321 1 123568888889888888887665221 11111112 24666676654
No 96
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=96.50 E-value=0.0088 Score=54.05 Aligned_cols=24 Identities=33% Similarity=0.500 Sum_probs=21.1
Q ss_pred EEEEEccCCCcHHHHHHHHHcccc
Q 007817 198 VIPIVGMAGAGKTMLAREVYNDRA 221 (588)
Q Consensus 198 vv~I~G~gGiGKTtLA~~v~~~~~ 221 (588)
.++|+|+.|+|||||++.++....
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~ 25 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLG 25 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHG
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 578999999999999999987654
No 97
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=96.45 E-value=0.0082 Score=60.54 Aligned_cols=84 Identities=19% Similarity=0.184 Sum_probs=55.7
Q ss_pred eEEEEEEccCCCcHHHHHHHHHcccccccccccEEEEEEeCCcccHHHHHHHHHHHhcCCCC-----CCCCHHHHHHHHH
Q 007817 196 FCVIPIVGMAGAGKTMLAREVYNDRAVQNFKFDVKAWVSVSDDFDVLRISRALLESITSTNC-----DFKTLNEVQVKLR 270 (588)
Q Consensus 196 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~il~~l~~~~~-----~~~~~~~l~~~l~ 270 (588)
-.++.|.|++|+||||||.+++...... -..++|++....++.. .++.++.... ...+.++....+.
T Consensus 61 G~iv~I~G~pGsGKTtLal~la~~~~~~---g~~vlyi~~E~~~~~~-----~a~~lG~~~~~l~i~~~~~~e~~l~~~~ 132 (349)
T 2zr9_A 61 GRVIEIYGPESSGKTTVALHAVANAQAA---GGIAAFIDAEHALDPE-----YAKKLGVDTDSLLVSQPDTGEQALEIAD 132 (349)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHHHHT---TCCEEEEESSCCCCHH-----HHHHTTCCGGGCEEECCSSHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhC---CCeEEEEECCCCcCHH-----HHHHcCCCHHHeEEecCCCHHHHHHHHH
Confidence 3689999999999999999998765432 2357899988766543 2344443221 2345566655555
Q ss_pred HHhc-CCceeEEeccccc
Q 007817 271 IIVD-GKKFLLVLDDVWN 287 (588)
Q Consensus 271 ~~l~-~k~~LLVlDdv~~ 287 (588)
...+ .+.-+||+|.+..
T Consensus 133 ~l~~~~~~~lIVIDsl~~ 150 (349)
T 2zr9_A 133 MLVRSGALDIIVIDSVAA 150 (349)
T ss_dssp HHHTTTCCSEEEEECGGG
T ss_pred HHHhcCCCCEEEEcChHh
Confidence 5543 4567999999843
No 98
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=96.44 E-value=0.0094 Score=59.54 Aligned_cols=88 Identities=17% Similarity=0.194 Sum_probs=53.4
Q ss_pred EEEEEEccCCCcHHHHHHHHHccccccc---ccccEEEEEEeCCcccHHHHHHHHHHHhcCCCC---------CCCCHH-
Q 007817 197 CVIPIVGMAGAGKTMLAREVYNDRAVQN---FKFDVKAWVSVSDDFDVLRISRALLESITSTNC---------DFKTLN- 263 (588)
Q Consensus 197 ~vv~I~G~gGiGKTtLA~~v~~~~~~~~---~~f~~~~wv~v~~~~~~~~~~~~il~~l~~~~~---------~~~~~~- 263 (588)
.++.|+|++|+||||||.+++....... ..-..++|++....++...+.. ++..++.... ...+.+
T Consensus 108 ~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~~~~~~~l~~-~~~~~g~~~~~~~~~l~~~~~~~~~~ 186 (324)
T 2z43_A 108 TMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGTFRWERIEN-MAKALGLDIDNVMNNIYYIRAINTDH 186 (324)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHHHHH-HHHHTTCCHHHHHHTEEEEECCSHHH
T ss_pred cEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHH-HHHHhCCCHHHHhccEEEEeCCCHHH
Confidence 5899999999999999999987542210 0024688999988776665543 3444433210 112222
Q ss_pred --HHHHHHHHHhc--CCceeEEeccc
Q 007817 264 --EVQVKLRIIVD--GKKFLLVLDDV 285 (588)
Q Consensus 264 --~l~~~l~~~l~--~k~~LLVlDdv 285 (588)
++...+...++ .+.-+||+|.+
T Consensus 187 ~~~~l~~l~~~~~~~~~~~lvVIDsl 212 (324)
T 2z43_A 187 QIAIVDDLQELVSKDPSIKLIVVDSV 212 (324)
T ss_dssp HHHHHHHHHHHHHHCTTEEEEEETTT
T ss_pred HHHHHHHHHHHHHhccCCCEEEEeCc
Confidence 22334444443 45568888877
No 99
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=96.39 E-value=0.0035 Score=57.92 Aligned_cols=44 Identities=23% Similarity=0.259 Sum_probs=34.8
Q ss_pred chhhHHHHHHHHhcCCCCCCCCeEEEEEEccCCCcHHHHHHHHHccc
Q 007817 174 RDEDKARMLEMVLSDDPTTDANFCVIPIVGMAGAGKTMLAREVYNDR 220 (588)
Q Consensus 174 R~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~ 220 (588)
|++.++.|.+.+.... .....+++|.|+.|+|||||++.+....
T Consensus 3 ~~~~~~~l~~~~~~~~---~~~~~~i~i~G~~GsGKstl~~~l~~~~ 46 (201)
T 1rz3_A 3 LRDRIDFLCKTILAIK---TAGRLVLGIDGLSRSGKTTLANQLSQTL 46 (201)
T ss_dssp HHHHHHHHHHHHHTSC---CSSSEEEEEEECTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhc---cCCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 5667788888887542 2345799999999999999999998754
No 100
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=96.36 E-value=0.014 Score=58.82 Aligned_cols=58 Identities=12% Similarity=0.239 Sum_probs=40.0
Q ss_pred CeEEEEEEccCCCcHHHHHHHHHccccccc---ccccEEEEEEeCCcccHHHHHHHHHHHhc
Q 007817 195 NFCVIPIVGMAGAGKTMLAREVYNDRAVQN---FKFDVKAWVSVSDDFDVLRISRALLESIT 253 (588)
Q Consensus 195 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~---~~f~~~~wv~v~~~~~~~~~~~~il~~l~ 253 (588)
.-.++.|+|++|+||||||..++....... ..-..++|++....++...+.. ++..++
T Consensus 121 ~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~~~~~~~l~~-~~~~~g 181 (343)
T 1v5w_A 121 SMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENTFRPDRLRD-IADRFN 181 (343)
T ss_dssp SSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSSCCCHHHHHH-HHHHTT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHH-HHHHcC
Confidence 447999999999999999999887532210 0124688999988777665543 344443
No 101
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=96.30 E-value=0.0081 Score=56.91 Aligned_cols=89 Identities=12% Similarity=0.108 Sum_probs=50.6
Q ss_pred EEEEEEccCCCcHHHHHHHHHccccccc---ccccEEEEEEeCCcccHHHHHHHHHHHhcCCCC---------CCCCHHH
Q 007817 197 CVIPIVGMAGAGKTMLAREVYNDRAVQN---FKFDVKAWVSVSDDFDVLRISRALLESITSTNC---------DFKTLNE 264 (588)
Q Consensus 197 ~vv~I~G~gGiGKTtLA~~v~~~~~~~~---~~f~~~~wv~v~~~~~~~~~~~~il~~l~~~~~---------~~~~~~~ 264 (588)
.++.|+|++|+|||||+..++....... ..-..++|++....++...+. .++..++.... ...+..+
T Consensus 25 ~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~~~~~ 103 (243)
T 1n0w_A 25 SITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLL-AVAERYGLSGSDVLDNVAYARAFNTDH 103 (243)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHH-HHHHHTTCCHHHHHHTEEEEECCSHHH
T ss_pred eEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCCcCHHHHH-HHHHHcCCCHHHHhhCeEEEecCCHHH
Confidence 5999999999999999999987432110 012468888887755544332 33344432210 1122222
Q ss_pred H---HHHHHHHhc-CCceeEEecccc
Q 007817 265 V---QVKLRIIVD-GKKFLLVLDDVW 286 (588)
Q Consensus 265 l---~~~l~~~l~-~k~~LLVlDdv~ 286 (588)
. ...+...+. .+.-+||||++.
T Consensus 104 ~~~~~~~~~~~~~~~~~~lliiD~~~ 129 (243)
T 1n0w_A 104 QTQLLYQASAMMVESRYALLIVDSAT 129 (243)
T ss_dssp HHHHHHHHHHHHHHSCEEEEEEETSS
T ss_pred HHHHHHHHHHHHhcCCceEEEEeCch
Confidence 2 222333333 456788888773
No 102
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=96.26 E-value=0.012 Score=57.95 Aligned_cols=86 Identities=15% Similarity=0.117 Sum_probs=46.4
Q ss_pred eEEEEEEccCCCcHHHHHHHHHcccccccccccEEEEEEeCC-cccHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhc
Q 007817 196 FCVIPIVGMAGAGKTMLAREVYNDRAVQNFKFDVKAWVSVSD-DFDVLRISRALLESITSTNCDFKTLNEVQVKLRIIVD 274 (588)
Q Consensus 196 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~wv~v~~-~~~~~~~~~~il~~l~~~~~~~~~~~~l~~~l~~~l~ 274 (588)
..+++|+|++|+||||++..++....... .. .+..+.... .....+.+....+..+.......+...+...+.. +
T Consensus 105 g~vi~lvG~~GsGKTTl~~~LA~~l~~~~-G~-~V~lv~~D~~r~~a~eqL~~~~~~~gl~~~~~~~~~~l~~al~~-~- 180 (296)
T 2px0_A 105 SKYIVLFGSTGAGKTTTLAKLAAISMLEK-HK-KIAFITTDTYRIAAVEQLKTYAELLQAPLEVCYTKEEFQQAKEL-F- 180 (296)
T ss_dssp SSEEEEEESTTSSHHHHHHHHHHHHHHTT-CC-CEEEEECCCSSTTHHHHHHHHHTTTTCCCCBCSSHHHHHHHHHH-G-
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhc-CC-EEEEEecCcccchHHHHHHHHHHhcCCCeEecCCHHHHHHHHHH-h-
Confidence 46999999999999999999987654311 11 234444322 1223333333333333222112333444444443 3
Q ss_pred CCceeEEeccc
Q 007817 275 GKKFLLVLDDV 285 (588)
Q Consensus 275 ~k~~LLVlDdv 285 (588)
.+.=++|+|-.
T Consensus 181 ~~~dlvIiDT~ 191 (296)
T 2px0_A 181 SEYDHVFVDTA 191 (296)
T ss_dssp GGSSEEEEECC
T ss_pred cCCCEEEEeCC
Confidence 44568888843
No 103
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=96.26 E-value=0.011 Score=59.65 Aligned_cols=83 Identities=17% Similarity=0.163 Sum_probs=54.4
Q ss_pred eEEEEEEccCCCcHHHHHHHHHcccccccccccEEEEEEeCCcccHHHHHHHHHHHhcCCCC-----CCCCHHHHHHHHH
Q 007817 196 FCVIPIVGMAGAGKTMLAREVYNDRAVQNFKFDVKAWVSVSDDFDVLRISRALLESITSTNC-----DFKTLNEVQVKLR 270 (588)
Q Consensus 196 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~il~~l~~~~~-----~~~~~~~l~~~l~ 270 (588)
-.++.|.|.+|+||||||.+++......+ ..++|++....++... +..++.... ...+.+++...+.
T Consensus 63 G~ii~I~G~pGsGKTtLal~la~~~~~~g---~~vlyid~E~s~~~~~-----a~~~g~~~~~l~i~~~~~~e~~~~~~~ 134 (356)
T 1u94_A 63 GRIVEIYGPESSGKTTLTLQVIAAAQREG---KTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEICD 134 (356)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHHHHHHTT---CCEEEEESSCCCCHHH-----HHHTTCCGGGCEEECCSSHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCC---CeEEEEeCCCCccHHH-----HHHcCCChhheeeeCCCCHHHHHHHHH
Confidence 35899999999999999999887654322 3688999887766432 344433211 2234555555555
Q ss_pred HHh-cCCceeEEecccc
Q 007817 271 IIV-DGKKFLLVLDDVW 286 (588)
Q Consensus 271 ~~l-~~k~~LLVlDdv~ 286 (588)
... ..+.-+||+|.+.
T Consensus 135 ~l~~~~~~~lVVIDsl~ 151 (356)
T 1u94_A 135 ALARSGAVDVIVVDSVA 151 (356)
T ss_dssp HHHHHTCCSEEEEECGG
T ss_pred HHHhccCCCEEEEcCHH
Confidence 444 3556699999984
No 104
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=96.22 E-value=0.0086 Score=59.73 Aligned_cols=57 Identities=18% Similarity=0.237 Sum_probs=39.4
Q ss_pred eEEEEEEccCCCcHHHHHHHHHcccccc----------c-ccc--cEEEEEEeCCcccHHHHHHHHHHHhc
Q 007817 196 FCVIPIVGMAGAGKTMLAREVYNDRAVQ----------N-FKF--DVKAWVSVSDDFDVLRISRALLESIT 253 (588)
Q Consensus 196 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~----------~-~~f--~~~~wv~v~~~~~~~~~~~~il~~l~ 253 (588)
-.++.|.|.+|+|||+||.+++...... . ... ..++|++....++..++.. ++..++
T Consensus 98 g~i~~i~G~~gsGKT~la~~la~~~~l~~~~~~~~~~~~~gg~~~~~v~yi~~e~~~~~~~l~~-~~~~~g 167 (322)
T 2i1q_A 98 QSVTEFAGVFGSGKTQIMHQSCVNLQNPEFLFYDEEAVSKGEVAQPKAVYIDTEGTFRPERIMQ-MAEHAG 167 (322)
T ss_dssp TEEEEEEESTTSSHHHHHHHHHHHTTCGGGEECCTTTSCTTTTSSEEEEEEESSSCCCHHHHHH-HHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHhccccccccccccccCCCCCceEEEEECCCCCCHHHHHH-HHHHcC
Confidence 4799999999999999999988653210 0 001 4788999988877666553 344443
No 105
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=96.12 E-value=0.017 Score=56.65 Aligned_cols=38 Identities=16% Similarity=0.101 Sum_probs=27.8
Q ss_pred EEEEEEccCCCcHHHHHHHHHcccccccccccEEEEEEeC
Q 007817 197 CVIPIVGMAGAGKTMLAREVYNDRAVQNFKFDVKAWVSVS 236 (588)
Q Consensus 197 ~vv~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~wv~v~ 236 (588)
.+++|.|++|+|||||+..++....... -..++|++..
T Consensus 36 ~~~~i~G~~G~GKTTl~~~ia~~~~~~~--G~~v~~~~~e 73 (296)
T 1cr0_A 36 EVIMVTSGSGMGKSTFVRQQALQWGTAM--GKKVGLAMLE 73 (296)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHHHHTS--CCCEEEEESS
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHHHHHc--CCeEEEEeCc
Confidence 5899999999999999999987654321 1145566543
No 106
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=96.05 E-value=0.025 Score=55.31 Aligned_cols=82 Identities=17% Similarity=0.115 Sum_probs=44.5
Q ss_pred CCeEEEEEEccCCCcHHHHHHHHHcccccccccccEEEEEEeCCcccHHHHHHHHHHHh------cC-CCCCCCCHHHHH
Q 007817 194 ANFCVIPIVGMAGAGKTMLAREVYNDRAVQNFKFDVKAWVSVSDDFDVLRISRALLESI------TS-TNCDFKTLNEVQ 266 (588)
Q Consensus 194 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~il~~l------~~-~~~~~~~~~~l~ 266 (588)
+...+|+|+|..|+||||||+.+.......+........|+...-.-.......+.... .. ..+...+...+.
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~~l~~~g~~~~~~~iv~~D~f~~~~~~~~~l~~~~~~~~l~~~~g~p~a~d~~~l~ 108 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYNHLMEKYGGEKSIGYASIDDFYLTHEDQLKLNEQFKNNKLLQGRGLPGTHDMKLLQ 108 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHHHHGGGSCEEEEEGGGGBCCHHHHHHHHHHTTTCGGGSSSCSTTSBCHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhhhcCCCCceEEEeccccccCChHHHHHHhccccccchhhhccCcchhHHHHHH
Confidence 45689999999999999999998876543210122344445443332233333333221 10 013445556665
Q ss_pred HHHHHHhcC
Q 007817 267 VKLRIIVDG 275 (588)
Q Consensus 267 ~~l~~~l~~ 275 (588)
..+.....+
T Consensus 109 ~~l~~l~~g 117 (290)
T 1odf_A 109 EVLNTIFNN 117 (290)
T ss_dssp HHHHHHTC-
T ss_pred HHHHHhhcc
Confidence 555555444
No 107
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=96.04 E-value=0.00084 Score=61.25 Aligned_cols=106 Identities=14% Similarity=0.084 Sum_probs=52.0
Q ss_pred EEEEEEccCCCcHHHHHHHHHcccccccccccEEEEEEeCCc--ccHHHHHHHHHHHhcCCC--CCCCCHHHHHHHHHHH
Q 007817 197 CVIPIVGMAGAGKTMLAREVYNDRAVQNFKFDVKAWVSVSDD--FDVLRISRALLESITSTN--CDFKTLNEVQVKLRII 272 (588)
Q Consensus 197 ~vv~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~wv~v~~~--~~~~~~~~~il~~l~~~~--~~~~~~~~l~~~l~~~ 272 (588)
.++.|+|+.|+||||++..++.+....+ .. ++.+....+ .... .+...++... ....+..+ +.+.
T Consensus 4 ~i~vi~G~~gsGKTT~ll~~~~~~~~~g--~~-v~~~~~~~d~r~~~~----~i~s~~g~~~~~~~~~~~~~----~~~~ 72 (184)
T 2orw_A 4 KLTVITGPMYSGKTTELLSFVEIYKLGK--KK-VAVFKPKIDSRYHST----MIVSHSGNGVEAHVIERPEE----MRKY 72 (184)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHHHHTT--CE-EEEEEEC-----CCC----EECC----CEECEEESSGGG----GGGG
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHCC--Ce-EEEEeeccccccCcc----cEEecCCCceeeEEECCHHH----HHHH
Confidence 4788999999999999977776554332 22 223322211 0000 0000011000 00111221 1222
Q ss_pred hcCCceeEEeccccccChhHHHHhhcccCCCCCCcEEEEeecch
Q 007817 273 VDGKKFLLVLDDVWNENYNLWEILKAPFMAGARNSKIIVTTCHS 316 (588)
Q Consensus 273 l~~k~~LLVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTTR~~ 316 (588)
+.++.-+|++|.++.-+.+..+.+.... +. |..|++|.+..
T Consensus 73 ~~~~~dvviIDE~Q~~~~~~~~~l~~l~-~~--~~~Vi~~Gl~~ 113 (184)
T 2orw_A 73 IEEDTRGVFIDEVQFFNPSLFEVVKDLL-DR--GIDVFCAGLDL 113 (184)
T ss_dssp CCTTEEEEEECCGGGSCTTHHHHHHHHH-HT--TCEEEEEEESB
T ss_pred hcCCCCEEEEECcccCCHHHHHHHHHHH-HC--CCCEEEEeecc
Confidence 2345569999999775444333333232 22 67899988754
No 108
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=95.98 E-value=0.054 Score=51.27 Aligned_cols=24 Identities=25% Similarity=0.556 Sum_probs=21.7
Q ss_pred EEEEEEccCCCcHHHHHHHHHccc
Q 007817 197 CVIPIVGMAGAGKTMLAREVYNDR 220 (588)
Q Consensus 197 ~vv~I~G~gGiGKTtLA~~v~~~~ 220 (588)
.+++|+|+.|+|||||.+.+..-.
T Consensus 32 e~~~i~G~nGsGKSTLl~~l~Gl~ 55 (237)
T 2cbz_A 32 ALVAVVGQVGCGKSSLLSALLAEM 55 (237)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTCS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 589999999999999999998754
No 109
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=95.94 E-value=0.022 Score=56.41 Aligned_cols=48 Identities=15% Similarity=0.084 Sum_probs=33.7
Q ss_pred eechhhHHHHHHHHhcCCCCCCCCeEEEEEEccCCCcHHHHHHHHHcccc
Q 007817 172 YGRDEDKARMLEMVLSDDPTTDANFCVIPIVGMAGAGKTMLAREVYNDRA 221 (588)
Q Consensus 172 vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~ 221 (588)
+|-...+..+...+.... ....+.+++|.|+.|+|||||++.+..-..
T Consensus 70 ~~~~~~l~~~~~~~l~~~--~~~~p~iigI~GpsGSGKSTl~~~L~~ll~ 117 (321)
T 3tqc_A 70 VTARQTLQQATYQFLGKP--EPKVPYIIGIAGSVAVGKSTTSRVLKALLS 117 (321)
T ss_dssp HHHHHHHHHHHHHHHTCC--CCCCCEEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred hcchHHHHHHHHHHhccC--CCCCCEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 444455555555555443 234678999999999999999999876543
No 110
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=95.82 E-value=0.052 Score=56.11 Aligned_cols=28 Identities=21% Similarity=0.307 Sum_probs=24.1
Q ss_pred CeEEEEEEccCCCcHHHHHHHHHccccc
Q 007817 195 NFCVIPIVGMAGAGKTMLAREVYNDRAV 222 (588)
Q Consensus 195 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~ 222 (588)
.+.+|.|+|.+|+||||++..++.....
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~ 126 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQK 126 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHT
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHHH
Confidence 4689999999999999999988876544
No 111
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=95.82 E-value=0.017 Score=52.63 Aligned_cols=117 Identities=15% Similarity=0.050 Sum_probs=59.4
Q ss_pred EEEEEEccCCCcHHHHHHHHHcccccccccccEEEEEEeCCc---ccHHHHHHHHHHHhc--CCCC--CCCC-------H
Q 007817 197 CVIPIVGMAGAGKTMLAREVYNDRAVQNFKFDVKAWVSVSDD---FDVLRISRALLESIT--STNC--DFKT-------L 262 (588)
Q Consensus 197 ~vv~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~wv~v~~~---~~~~~~~~~il~~l~--~~~~--~~~~-------~ 262 (588)
..|.|++..|.||||+|-...-..-..+ + .+.++...+. .....++..+.-.+. +... ...+ .
T Consensus 29 g~i~v~tG~GkGKTTaA~GlalRA~g~G--~-rV~~vQF~Kg~~~~gE~~~l~~L~v~~~~~g~gf~~~~~~~~~~~~~a 105 (196)
T 1g5t_A 29 GIIIVFTGNGKGKTTAAFGTAARAVGHG--K-NVGVVQFIKGTWPNGERNLLEPHGVEFQVMATGFTWETQNREADTAAC 105 (196)
T ss_dssp CCEEEEESSSSCHHHHHHHHHHHHHHTT--C-CEEEEESSCCSSCCHHHHHHGGGTCEEEECCTTCCCCGGGHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHCC--C-eEEEEEeeCCCCCccHHHHHHhCCcEEEEcccccccCCCCcHHHHHHH
Confidence 4566777777999999977766543322 2 3444544332 233334333310000 0000 0101 1
Q ss_pred HHHHHHHHHHhcCCc-eeEEecccccc---ChhHHHHhhcccCCCCCCcEEEEeecch
Q 007817 263 NEVQVKLRIIVDGKK-FLLVLDDVWNE---NYNLWEILKAPFMAGARNSKIIVTTCHS 316 (588)
Q Consensus 263 ~~l~~~l~~~l~~k~-~LLVlDdv~~~---~~~~~~~l~~~l~~~~~gs~ilvTTR~~ 316 (588)
.......++.+.+.+ =|||||++-.. .....+.+...+........||+|+|..
T Consensus 106 ~~~l~~a~~~l~~~~yDlvILDEi~~al~~g~l~~~ev~~~l~~Rp~~~~vIlTGr~a 163 (196)
T 1g5t_A 106 MAVWQHGKRMLADPLLDMVVLDELTYMVAYDYLPLEEVISALNARPGHQTVIITGRGC 163 (196)
T ss_dssp HHHHHHHHHHTTCTTCSEEEEETHHHHHHTTSSCHHHHHHHHHTSCTTCEEEEECSSC
T ss_pred HHHHHHHHHHHhcCCCCEEEEeCCCccccCCCCCHHHHHHHHHhCcCCCEEEEECCCC
Confidence 122233445555444 49999998221 1123344455555555677899999986
No 112
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=95.80 E-value=0.1 Score=49.09 Aligned_cols=25 Identities=28% Similarity=0.458 Sum_probs=22.1
Q ss_pred EEEEEEccCCCcHHHHHHHHHcccc
Q 007817 197 CVIPIVGMAGAGKTMLAREVYNDRA 221 (588)
Q Consensus 197 ~vv~I~G~gGiGKTtLA~~v~~~~~ 221 (588)
.+++|+|+.|+|||||.+.++.-..
T Consensus 35 e~~~i~G~nGsGKSTLl~~l~Gl~~ 59 (229)
T 2pze_A 35 QLLAVAGSTGAGKTSLLMMIMGELE 59 (229)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCc
Confidence 4899999999999999999987543
No 113
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=95.79 E-value=0.043 Score=54.43 Aligned_cols=50 Identities=18% Similarity=0.172 Sum_probs=37.1
Q ss_pred EEEEEEccCCCcHHHHHHHHHcccccccccccEEEEEEeCCcccHHHHHHHHHHH
Q 007817 197 CVIPIVGMAGAGKTMLAREVYNDRAVQNFKFDVKAWVSVSDDFDVLRISRALLES 251 (588)
Q Consensus 197 ~vv~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~il~~ 251 (588)
.++.|.|.+|+||||||.+++.+...++ ..++|++.. .+..++...++..
T Consensus 69 ~l~li~G~pG~GKTtl~l~ia~~~a~~g---~~vl~~slE--~s~~~l~~R~~~~ 118 (315)
T 3bh0_A 69 NFVLIAARPSMGKTAFALKQAKNMSDND---DVVNLHSLE--MGKKENIKRLIVT 118 (315)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHHTTT---CEEEEEESS--SCHHHHHHHHHHH
T ss_pred cEEEEEeCCCCCHHHHHHHHHHHHHHcC---CeEEEEECC--CCHHHHHHHHHHH
Confidence 5899999999999999999987654322 467888876 3455666666554
No 114
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=95.70 E-value=0.013 Score=59.06 Aligned_cols=55 Identities=22% Similarity=0.135 Sum_probs=35.7
Q ss_pred HHHHHHHhcCCCCCCCCeEEEEEEccCCCcHHHHHHHHHcccccccccccEEEEEEeCCcc
Q 007817 179 ARMLEMVLSDDPTTDANFCVIPIVGMAGAGKTMLAREVYNDRAVQNFKFDVKAWVSVSDDF 239 (588)
Q Consensus 179 ~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~wv~v~~~~ 239 (588)
-++++.+..-. .-..++|+|++|+|||||++.+.+....+...+.+ +++-+++..
T Consensus 162 iraID~~~pi~-----rGQr~~IvG~sG~GKTtLl~~Iar~i~~~~~~v~~-I~~lIGER~ 216 (422)
T 3ice_A 162 ARVLDLASPIG-----RGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVL-MVLLIDERP 216 (422)
T ss_dssp HHHHHHHSCCB-----TTCEEEEECCSSSSHHHHHHHHHHHHHHHCTTSEE-EEEEESSCH
T ss_pred ceeeeeeeeec-----CCcEEEEecCCCCChhHHHHHHHHHHhhcCCCeeE-EEEEecCCh
Confidence 34556665432 23588999999999999999988765332213333 356666554
No 115
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=95.70 E-value=0.005 Score=55.37 Aligned_cols=24 Identities=25% Similarity=0.234 Sum_probs=21.7
Q ss_pred EEEEEEccCCCcHHHHHHHHHccc
Q 007817 197 CVIPIVGMAGAGKTMLAREVYNDR 220 (588)
Q Consensus 197 ~vv~I~G~gGiGKTtLA~~v~~~~ 220 (588)
.+|.|+|++|+||||+|+.+.+..
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~~l 27 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQSVL 27 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHHhc
Confidence 579999999999999999998854
No 116
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=95.69 E-value=0.0081 Score=55.72 Aligned_cols=41 Identities=17% Similarity=0.228 Sum_probs=29.7
Q ss_pred hHHHHHHHHhcCCCCCCCCeEEEEEEccCCCcHHHHHHHHHcccc
Q 007817 177 DKARMLEMVLSDDPTTDANFCVIPIVGMAGAGKTMLAREVYNDRA 221 (588)
Q Consensus 177 e~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~ 221 (588)
-.++|.+.+... .+...+++|+|+.|+|||||++.+..-..
T Consensus 7 ~~~~~~~~~~~~----~~~g~~v~I~G~sGsGKSTl~~~l~~~~~ 47 (208)
T 3c8u_A 7 LCQGVLERLDPR----QPGRQLVALSGAPGSGKSTLSNPLAAALS 47 (208)
T ss_dssp HHHHHHHHSCTT----CCSCEEEEEECCTTSCTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhc----CCCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 344555555432 13457999999999999999999987543
No 117
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=95.65 E-value=0.0099 Score=62.85 Aligned_cols=44 Identities=23% Similarity=0.283 Sum_probs=36.9
Q ss_pred ceeechhhHHHHHHHHhcCCCCCCCCeEEEEEEccCCCcHHHHHHHHHcccc
Q 007817 170 AVYGRDEDKARMLEMVLSDDPTTDANFCVIPIVGMAGAGKTMLAREVYNDRA 221 (588)
Q Consensus 170 ~~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~ 221 (588)
.++|++..++.+...+... .-+.|+|++|+|||+||+.+.+...
T Consensus 23 ~ivGq~~~i~~l~~al~~~--------~~VLL~GpPGtGKT~LAraLa~~l~ 66 (500)
T 3nbx_X 23 GLYERSHAIRLCLLAALSG--------ESVFLLGPPGIAKSLIARRLKFAFQ 66 (500)
T ss_dssp TCSSCHHHHHHHHHHHHHT--------CEEEEECCSSSSHHHHHHHGGGGBS
T ss_pred hhHHHHHHHHHHHHHHhcC--------CeeEeecCchHHHHHHHHHHHHHHh
Confidence 4789999898888888754 3678999999999999999998653
No 118
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=95.62 E-value=0.011 Score=57.79 Aligned_cols=42 Identities=19% Similarity=0.298 Sum_probs=29.5
Q ss_pred hHHHHHHHHhcCCCCCCCCeEEEEEEccCCCcHHHHHHHHHcc
Q 007817 177 DKARMLEMVLSDDPTTDANFCVIPIVGMAGAGKTMLAREVYND 219 (588)
Q Consensus 177 e~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~ 219 (588)
..++++..++.... ......+|.|.|++|+||||+|+.+...
T Consensus 15 ~~~~~~~~~l~~~~-~~~~~~livl~G~sGsGKSTla~~L~~~ 56 (287)
T 1gvn_B 15 RLNDNLEELIQGKK-AVESPTAFLLGGQPGSGKTSLRSAIFEE 56 (287)
T ss_dssp HHHHHHHHHHTTCC-CCSSCEEEEEECCTTSCTHHHHHHHHHH
T ss_pred HHHHHHHHHhcccc-CCCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 34444444444322 2345679999999999999999999874
No 119
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=95.61 E-value=0.0065 Score=54.61 Aligned_cols=22 Identities=36% Similarity=0.576 Sum_probs=20.6
Q ss_pred EEEEEEccCCCcHHHHHHHHHc
Q 007817 197 CVIPIVGMAGAGKTMLAREVYN 218 (588)
Q Consensus 197 ~vv~I~G~gGiGKTtLA~~v~~ 218 (588)
.+|.|.|++|+||||+|+.+.+
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 5899999999999999999987
No 120
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=95.59 E-value=0.007 Score=55.09 Aligned_cols=24 Identities=25% Similarity=0.382 Sum_probs=21.8
Q ss_pred eEEEEEEccCCCcHHHHHHHHHcc
Q 007817 196 FCVIPIVGMAGAGKTMLAREVYND 219 (588)
Q Consensus 196 ~~vv~I~G~gGiGKTtLA~~v~~~ 219 (588)
..+++|+|++|+|||||++.+...
T Consensus 9 g~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 9 GNILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp TEEEEEEECTTSCHHHHHHHHHTC
T ss_pred CeEEEEECCCCCCHHHHHHHHHhc
Confidence 368999999999999999999875
No 121
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=95.54 E-value=0.0065 Score=54.14 Aligned_cols=24 Identities=17% Similarity=0.153 Sum_probs=21.3
Q ss_pred EEEEEEccCCCcHHHHHHHHHccc
Q 007817 197 CVIPIVGMAGAGKTMLAREVYNDR 220 (588)
Q Consensus 197 ~vv~I~G~gGiGKTtLA~~v~~~~ 220 (588)
.+|+|.|++|+||||+|+.+....
T Consensus 2 ~~i~l~G~~GsGKsT~~~~L~~~l 25 (173)
T 3kb2_A 2 TLIILEGPDCCFKSTVAAKLSKEL 25 (173)
T ss_dssp CEEEEECSSSSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 378999999999999999998754
No 122
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=95.54 E-value=0.054 Score=53.35 Aligned_cols=87 Identities=16% Similarity=0.148 Sum_probs=48.4
Q ss_pred CeEEEEEEccCCCcHHHHHHHHHcccccccccccEEEEEEeCCccc--HHHHHHHHHHHhcCCC---CCCCCHHHH-HHH
Q 007817 195 NFCVIPIVGMAGAGKTMLAREVYNDRAVQNFKFDVKAWVSVSDDFD--VLRISRALLESITSTN---CDFKTLNEV-QVK 268 (588)
Q Consensus 195 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~wv~v~~~~~--~~~~~~~il~~l~~~~---~~~~~~~~l-~~~ 268 (588)
...+++|+|++|+||||++..++......+ ..+.++... .+. ..+-+...++.++... ....+...+ ...
T Consensus 103 ~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g---~kV~lv~~D-~~r~~a~eqL~~~~~~~gl~~~~~~s~~~~~~v~~~a 178 (306)
T 1vma_A 103 PPFVIMVVGVNGTGKTTSCGKLAKMFVDEG---KSVVLAAAD-TFRAAAIEQLKIWGERVGATVISHSEGADPAAVAFDA 178 (306)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHHHTT---CCEEEEEEC-TTCHHHHHHHHHHHHHHTCEEECCSTTCCHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHHHHHhcC---CEEEEEccc-cccHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHH
Confidence 457999999999999999999987654322 134444432 222 1222334444443211 111222222 234
Q ss_pred HHHHhcCCceeEEeccc
Q 007817 269 LRIIVDGKKFLLVLDDV 285 (588)
Q Consensus 269 l~~~l~~k~~LLVlDdv 285 (588)
+...+....-++|+|-.
T Consensus 179 l~~a~~~~~dvvIiDtp 195 (306)
T 1vma_A 179 VAHALARNKDVVIIDTA 195 (306)
T ss_dssp HHHHHHTTCSEEEEEEC
T ss_pred HHHHHhcCCCEEEEECC
Confidence 55545555668888965
No 123
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=95.54 E-value=0.024 Score=57.17 Aligned_cols=45 Identities=20% Similarity=0.338 Sum_probs=32.4
Q ss_pred CeEEEEEEccCCCcHHHHHHHHHcccccccccc----cEEEEEEeCCccc
Q 007817 195 NFCVIPIVGMAGAGKTMLAREVYNDRAVQNFKF----DVKAWVSVSDDFD 240 (588)
Q Consensus 195 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~~f----~~~~wv~v~~~~~ 240 (588)
.-.++.|+|++|+|||||+..++....... .. ..++|++....+.
T Consensus 130 ~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~-~~Gg~~G~vi~i~~e~~~~ 178 (349)
T 1pzn_A 130 TQAITEVFGEFGSGKTQLAHTLAVMVQLPP-EEGGLNGSVIWIDTENTFR 178 (349)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHHHTTSCG-GGTSCSCEEEEEESSSCCC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhccch-hcCCCCCeEEEEeCCCCCC
Confidence 447999999999999999999987642111 11 2458888776543
No 124
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=95.43 E-value=0.0091 Score=54.96 Aligned_cols=27 Identities=33% Similarity=0.487 Sum_probs=23.6
Q ss_pred CeEEEEEEccCCCcHHHHHHHHHcccc
Q 007817 195 NFCVIPIVGMAGAGKTMLAREVYNDRA 221 (588)
Q Consensus 195 ~~~vv~I~G~gGiGKTtLA~~v~~~~~ 221 (588)
...+|+|+|++|+|||||++.+.....
T Consensus 24 ~g~~i~l~G~sGsGKSTl~~~La~~l~ 50 (200)
T 3uie_A 24 KGCVIWVTGLSGSGKSTLACALNQMLY 50 (200)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 347999999999999999999988654
No 125
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=95.41 E-value=0.0075 Score=55.48 Aligned_cols=24 Identities=33% Similarity=0.433 Sum_probs=21.8
Q ss_pred EEEEEEccCCCcHHHHHHHHHccc
Q 007817 197 CVIPIVGMAGAGKTMLAREVYNDR 220 (588)
Q Consensus 197 ~vv~I~G~gGiGKTtLA~~v~~~~ 220 (588)
.+|+|+|++|+||||+++.+....
T Consensus 26 ~~i~l~G~~GsGKsTl~~~La~~l 49 (199)
T 3vaa_A 26 VRIFLTGYMGAGKTTLGKAFARKL 49 (199)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHc
Confidence 589999999999999999998754
No 126
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=95.40 E-value=0.077 Score=54.79 Aligned_cols=89 Identities=18% Similarity=0.135 Sum_probs=47.5
Q ss_pred CeEEEEEEccCCCcHHHHHHHHHcccccccccccEEEEEEeCC-cccHHHHHHHHHHHhcCCCC---CCCCHHHHH-HHH
Q 007817 195 NFCVIPIVGMAGAGKTMLAREVYNDRAVQNFKFDVKAWVSVSD-DFDVLRISRALLESITSTNC---DFKTLNEVQ-VKL 269 (588)
Q Consensus 195 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~wv~v~~-~~~~~~~~~~il~~l~~~~~---~~~~~~~l~-~~l 269 (588)
...++.++|++|+||||++..++......+ . .+..++... .....+-+......++.+.. ...+...+. ..+
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G--~-kVllv~~D~~r~~a~eqL~~~~~~~gv~~~~~~~~~dp~~i~~~al 172 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKRG--Y-KVGLVAADVYRPAAYDQLLQLGNQIGVQVYGEPNNQNPIEIAKKGV 172 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHHTT--C-CEEEEEECCSCHHHHHHHHHHHHTTTCCEECCTTCSCHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcC--C-eEEEEecCccchhHHHHHHHHHHhcCCceeeccccCCHHHHHHHHH
Confidence 468999999999999999999987665433 2 233344321 12223333444444333211 122333322 233
Q ss_pred HHHhcCCceeEEecccc
Q 007817 270 RIIVDGKKFLLVLDDVW 286 (588)
Q Consensus 270 ~~~l~~k~~LLVlDdv~ 286 (588)
........=++++|-..
T Consensus 173 ~~a~~~~~DvvIIDTaG 189 (433)
T 3kl4_A 173 DIFVKNKMDIIIVDTAG 189 (433)
T ss_dssp HHTTTTTCSEEEEEECC
T ss_pred HHHHhcCCCEEEEECCC
Confidence 33333344577788664
No 127
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=95.38 E-value=0.019 Score=60.24 Aligned_cols=107 Identities=17% Similarity=0.128 Sum_probs=56.5
Q ss_pred EEEEEccCCCcHHHHHHHHHcccccccccccEEEEEEeCCcccHHHHHHHHHHHhcCCCCCCCCHHHHHHH---------
Q 007817 198 VIPIVGMAGAGKTMLAREVYNDRAVQNFKFDVKAWVSVSDDFDVLRISRALLESITSTNCDFKTLNEVQVK--------- 268 (588)
Q Consensus 198 vv~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~il~~l~~~~~~~~~~~~l~~~--------- 268 (588)
.+.|.|.+|+||||++..+.......+ . ..++.+..+ .... ..+.+.++.. ..+...+...
T Consensus 47 ~~li~G~aGTGKT~ll~~~~~~l~~~~-~-~~il~~a~T-~~Aa----~~l~~~~~~~---~~T~h~~~~~~~~~~~~~~ 116 (459)
T 3upu_A 47 HVTINGPAGTGATTLTKFIIEALISTG-E-TGIILAAPT-HAAK----KILSKLSGKE---ASTIHSILKINPVTYEENV 116 (459)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHHTT-C-CCEEEEESS-HHHH----HHHHHHHSSC---EEEHHHHHTEEEEECSSCE
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHhcC-C-ceEEEecCc-HHHH----HHHHhhhccc---hhhHHHHhccCcccccccc
Confidence 899999999999999999988765433 2 233333222 2111 2222222111 0111110000
Q ss_pred -H--H-HHhcCCceeEEeccccccChhHHHHhhcccCCCCCCcEEEEeecchh
Q 007817 269 -L--R-IIVDGKKFLLVLDDVWNENYNLWEILKAPFMAGARNSKIIVTTCHSN 317 (588)
Q Consensus 269 -l--~-~~l~~k~~LLVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTTR~~~ 317 (588)
+ . .....+.-+||+|++...+...+..+...+. .+.++++..-..+
T Consensus 117 ~~~~~~~~~~~~~~~iiiDE~~~~~~~~~~~l~~~~~---~~~~~~~vGD~~Q 166 (459)
T 3upu_A 117 LFEQKEVPDLAKCRVLICDEVSMYDRKLFKILLSTIP---PWCTIIGIGDNKQ 166 (459)
T ss_dssp EEEECSCCCCSSCSEEEESCGGGCCHHHHHHHHHHSC---TTCEEEEEECTTS
T ss_pred hhcccccccccCCCEEEEECchhCCHHHHHHHHHhcc---CCCEEEEECCHHH
Confidence 0 0 0000133589999998777667777766654 4667777664443
No 128
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=95.37 E-value=0.047 Score=55.91 Aligned_cols=56 Identities=11% Similarity=0.175 Sum_probs=36.3
Q ss_pred EEEEEEccCCCcHHHHHHHHHcccccc---cccccEEEEEEeCCcccHHHHHHHHHHHhc
Q 007817 197 CVIPIVGMAGAGKTMLAREVYNDRAVQ---NFKFDVKAWVSVSDDFDVLRISRALLESIT 253 (588)
Q Consensus 197 ~vv~I~G~gGiGKTtLA~~v~~~~~~~---~~~f~~~~wv~v~~~~~~~~~~~~il~~l~ 253 (588)
.++.|+|++|+|||||+..++-..... +..-..++|++....++...+ ..+.+.++
T Consensus 179 ei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~~~rl-~~~a~~~g 237 (400)
T 3lda_A 179 SITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRL-VSIAQRFG 237 (400)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHH-HHHHHHTT
T ss_pred cEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccCHHHH-HHHHHHcC
Confidence 599999999999999999775322111 001246888888776655443 33455544
No 129
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=95.37 E-value=0.013 Score=56.29 Aligned_cols=44 Identities=25% Similarity=0.253 Sum_probs=31.1
Q ss_pred hhHHHHHHHHhcCCCCCCCCeEEEEEEccCCCcHHHHHHHHHccc
Q 007817 176 EDKARMLEMVLSDDPTTDANFCVIPIVGMAGAGKTMLAREVYNDR 220 (588)
Q Consensus 176 ~e~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~ 220 (588)
...+++...+..... ......+|.|+|++|+||||+|+.+....
T Consensus 13 ~~~~~~~~~~~~~~~-~~~~~~~i~l~G~~GsGKSTla~~L~~~l 56 (253)
T 2p5t_B 13 HALARNLRSLTRGKK-SSKQPIAILLGGQSGAGKTTIHRIKQKEF 56 (253)
T ss_dssp HHHHHHHHHHHTTCC-CCSSCEEEEEESCGGGTTHHHHHHHHHHT
T ss_pred HHHHHHHHHHHccCC-cccCCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 334445555554433 33456899999999999999999998743
No 130
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=95.33 E-value=0.043 Score=54.80 Aligned_cols=51 Identities=16% Similarity=0.130 Sum_probs=37.0
Q ss_pred EEEEEEccCCCcHHHHHHHHHcccccccccccEEEEEEeCCcccHHHHHHHHHHHh
Q 007817 197 CVIPIVGMAGAGKTMLAREVYNDRAVQNFKFDVKAWVSVSDDFDVLRISRALLESI 252 (588)
Q Consensus 197 ~vv~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~il~~l 252 (588)
.++.|.|.+|+||||||..++.+....+ ..++|++.. .+..++...++...
T Consensus 47 ~LiiIaG~pG~GKTt~al~ia~~~a~~g---~~Vl~fSlE--ms~~ql~~Rlls~~ 97 (338)
T 4a1f_A 47 SLVIIGARPSMGKTSLMMNMVLSALNDD---RGVAVFSLE--MSAEQLALRALSDL 97 (338)
T ss_dssp CEEEEEECTTSCHHHHHHHHHHHHHHTT---CEEEEEESS--SCHHHHHHHHHHHH
T ss_pred cEEEEEeCCCCCHHHHHHHHHHHHHHcC---CeEEEEeCC--CCHHHHHHHHHHHh
Confidence 5889999999999999999988654422 356777764 34566666666554
No 131
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=95.33 E-value=0.0099 Score=54.08 Aligned_cols=26 Identities=23% Similarity=0.341 Sum_probs=22.6
Q ss_pred CeEEEEEEccCCCcHHHHHHHHHccc
Q 007817 195 NFCVIPIVGMAGAGKTMLAREVYNDR 220 (588)
Q Consensus 195 ~~~vv~I~G~gGiGKTtLA~~v~~~~ 220 (588)
...+|.|.|++|+||||+|+.+....
T Consensus 4 ~~~~I~l~G~~GsGKST~~~~L~~~l 29 (193)
T 2rhm_A 4 TPALIIVTGHPATGKTTLSQALATGL 29 (193)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHc
Confidence 34789999999999999999998744
No 132
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=95.32 E-value=0.009 Score=54.01 Aligned_cols=24 Identities=13% Similarity=0.386 Sum_probs=21.6
Q ss_pred EEEEEEccCCCcHHHHHHHHHccc
Q 007817 197 CVIPIVGMAGAGKTMLAREVYNDR 220 (588)
Q Consensus 197 ~vv~I~G~gGiGKTtLA~~v~~~~ 220 (588)
.+++|+|+.|+|||||++.+....
T Consensus 6 ~~i~i~GpsGsGKSTL~~~L~~~~ 29 (180)
T 1kgd_A 6 KTLVLLGAHGVGRRHIKNTLITKH 29 (180)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHHhhC
Confidence 589999999999999999998754
No 133
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=95.30 E-value=0.0073 Score=53.96 Aligned_cols=24 Identities=33% Similarity=0.472 Sum_probs=21.3
Q ss_pred EEEEEEccCCCcHHHHHHHHHccc
Q 007817 197 CVIPIVGMAGAGKTMLAREVYNDR 220 (588)
Q Consensus 197 ~vv~I~G~gGiGKTtLA~~v~~~~ 220 (588)
.+|+|+|++|+|||||++.+....
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~l 28 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQL 28 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHh
Confidence 479999999999999999998743
No 134
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=95.27 E-value=0.012 Score=52.58 Aligned_cols=24 Identities=29% Similarity=0.585 Sum_probs=21.6
Q ss_pred eEEEEEEccCCCcHHHHHHHHHcc
Q 007817 196 FCVIPIVGMAGAGKTMLAREVYND 219 (588)
Q Consensus 196 ~~vv~I~G~gGiGKTtLA~~v~~~ 219 (588)
..+++|+|+.|+||||+++.+...
T Consensus 8 g~~i~l~G~~GsGKSTl~~~l~~~ 31 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAVASEVAHQ 31 (175)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHh
Confidence 468999999999999999999864
No 135
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=95.26 E-value=0.013 Score=59.50 Aligned_cols=51 Identities=25% Similarity=0.341 Sum_probs=36.0
Q ss_pred ceeechhhHHHHHHHHhcC-------C--CCCCCCeEEEEEEccCCCcHHHHHHHHHccc
Q 007817 170 AVYGRDEDKARMLEMVLSD-------D--PTTDANFCVIPIVGMAGAGKTMLAREVYNDR 220 (588)
Q Consensus 170 ~~vGR~~e~~~l~~~L~~~-------~--~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~ 220 (588)
.++|.+..++.+...+... . .........+.|+|++|+|||++|+.+++..
T Consensus 16 ~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppGtGKT~la~~ia~~~ 75 (363)
T 3hws_A 16 YVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARLL 75 (363)
T ss_dssp HCCSCHHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred hccCHHHHHHHHHHHHHHHHhhhccccccccccCCCCeEEEECCCCCCHHHHHHHHHHHc
Confidence 3688888888887777210 0 0011134578899999999999999999865
No 136
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=95.23 E-value=0.009 Score=54.08 Aligned_cols=24 Identities=29% Similarity=0.455 Sum_probs=21.5
Q ss_pred EEEEEEccCCCcHHHHHHHHHccc
Q 007817 197 CVIPIVGMAGAGKTMLAREVYNDR 220 (588)
Q Consensus 197 ~vv~I~G~gGiGKTtLA~~v~~~~ 220 (588)
+.|.|+|++|+||||+|+.+....
T Consensus 6 ~~i~l~G~~GsGKst~a~~La~~l 29 (185)
T 3trf_A 6 TNIYLIGLMGAGKTSVGSQLAKLT 29 (185)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHh
Confidence 578899999999999999998754
No 137
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=95.22 E-value=0.01 Score=53.89 Aligned_cols=25 Identities=20% Similarity=0.271 Sum_probs=22.3
Q ss_pred EEEEEEccCCCcHHHHHHHHHcccc
Q 007817 197 CVIPIVGMAGAGKTMLAREVYNDRA 221 (588)
Q Consensus 197 ~vv~I~G~gGiGKTtLA~~v~~~~~ 221 (588)
.+|.|.|++|+||||+|+.+.+...
T Consensus 2 ~~I~i~G~~GsGKsT~~~~L~~~l~ 26 (194)
T 1nks_A 2 KIGIVTGIPGVGKSTVLAKVKEILD 26 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4789999999999999999988654
No 138
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=95.18 E-value=0.011 Score=54.97 Aligned_cols=25 Identities=28% Similarity=0.453 Sum_probs=22.4
Q ss_pred eEEEEEEccCCCcHHHHHHHHHccc
Q 007817 196 FCVIPIVGMAGAGKTMLAREVYNDR 220 (588)
Q Consensus 196 ~~vv~I~G~gGiGKTtLA~~v~~~~ 220 (588)
..+++|+|+.|+|||||++.+....
T Consensus 8 g~~i~l~GpsGsGKsTl~~~L~~~~ 32 (208)
T 3tau_A 8 GLLIVLSGPSGVGKGTVREAVFKDP 32 (208)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHST
T ss_pred CcEEEEECcCCCCHHHHHHHHHhhC
Confidence 4689999999999999999998754
No 139
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=95.18 E-value=0.0065 Score=55.26 Aligned_cols=24 Identities=29% Similarity=0.537 Sum_probs=20.6
Q ss_pred EEEEEEccCCCcHHHHHHHHHccc
Q 007817 197 CVIPIVGMAGAGKTMLAREVYNDR 220 (588)
Q Consensus 197 ~vv~I~G~gGiGKTtLA~~v~~~~ 220 (588)
+.|.|+|++|+|||||++.+....
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L~~~~ 25 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHHHhC
Confidence 347899999999999999998743
No 140
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=95.15 E-value=0.0086 Score=55.15 Aligned_cols=25 Identities=20% Similarity=0.388 Sum_probs=22.0
Q ss_pred eEEEEEEccCCCcHHHHHHHHHccc
Q 007817 196 FCVIPIVGMAGAGKTMLAREVYNDR 220 (588)
Q Consensus 196 ~~vv~I~G~gGiGKTtLA~~v~~~~ 220 (588)
..+|+|.|++|+||||+|+.+....
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~l 42 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEAC 42 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3589999999999999999998754
No 141
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=95.13 E-value=0.01 Score=54.56 Aligned_cols=25 Identities=28% Similarity=0.523 Sum_probs=22.0
Q ss_pred eEEEEEEccCCCcHHHHHHHHHccc
Q 007817 196 FCVIPIVGMAGAGKTMLAREVYNDR 220 (588)
Q Consensus 196 ~~vv~I~G~gGiGKTtLA~~v~~~~ 220 (588)
..+++|+|+.|+|||||++.+....
T Consensus 29 g~~i~l~G~~GsGKSTl~~~L~~~~ 53 (200)
T 4eun_A 29 TRHVVVMGVSGSGKTTIAHGVADET 53 (200)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhh
Confidence 4689999999999999999998743
No 142
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=95.04 E-value=0.051 Score=56.40 Aligned_cols=88 Identities=18% Similarity=0.239 Sum_probs=50.9
Q ss_pred EEEEEEccCCCcHHHHHHHHHcccccccccccEEEEEEeCCccc-HHHHHHHHHHHhc--------CCCCCCCCHHH---
Q 007817 197 CVIPIVGMAGAGKTMLAREVYNDRAVQNFKFDVKAWVSVSDDFD-VLRISRALLESIT--------STNCDFKTLNE--- 264 (588)
Q Consensus 197 ~vv~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~wv~v~~~~~-~~~~~~~il~~l~--------~~~~~~~~~~~--- 264 (588)
..++|+|.+|+|||||++.+..+.... +-+.++++-+++..+ ..+++.++...-. ....+......
T Consensus 152 q~~~i~G~sGvGKTtL~~~l~~~~~~~--~~~i~V~~~iGerttev~el~~~l~~~~~l~~tvvv~~~~~d~pg~r~~~~ 229 (473)
T 1sky_E 152 GKIGLFGGAGVGKTVLIQELIHNIAQE--HGGISVFAGVGERTREGNDLYHEMKDSGVISKTAMVFGQMNEPPGARMRVA 229 (473)
T ss_dssp CEEEEECCSSSCHHHHHHHHHHHHHHH--TCCCEEEEEESSCHHHHHHHHHHHHHTSGGGGEEEEEECTTSCHHHHHHHH
T ss_pred CEEEEECCCCCCccHHHHHHHhhhhhc--cCcEEEEeeeccCchHHHHHHHHhhhcCCcceeEEEEEcCCCCHHHHHHHH
Confidence 368899999999999999998865432 234556677766543 3445554543200 00101100111
Q ss_pred -HHHHHHHHh---cCCceeEEecccc
Q 007817 265 -VQVKLRIIV---DGKKFLLVLDDVW 286 (588)
Q Consensus 265 -l~~~l~~~l---~~k~~LLVlDdv~ 286 (588)
..-.+.+++ +++..||++||+.
T Consensus 230 ~~~ltiAEyFrd~~G~~VLl~~D~it 255 (473)
T 1sky_E 230 LTGLTMAEYFRDEQGQDGLLFIDNIF 255 (473)
T ss_dssp HHHHHHHHHHHHHSCCEEEEEEECTH
T ss_pred HHHHHHHHHHHHhcCCcEEEEeccHH
Confidence 111233333 5889999999993
No 143
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=95.04 E-value=0.14 Score=52.93 Aligned_cols=30 Identities=23% Similarity=0.239 Sum_probs=25.4
Q ss_pred CCeEEEEEEccCCCcHHHHHHHHHcccccc
Q 007817 194 ANFCVIPIVGMAGAGKTMLAREVYNDRAVQ 223 (588)
Q Consensus 194 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 223 (588)
..+++|.|+|.+|+||||++..++.....+
T Consensus 98 ~~~~vI~ivG~~GvGKTT~a~~LA~~l~~~ 127 (433)
T 2xxa_A 98 QPPAVVLMAGLQGAGKTTSVGKLGKFLREK 127 (433)
T ss_dssp SSSEEEEEECSTTSSHHHHHHHHHHHHHHT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHh
Confidence 356899999999999999999998766544
No 144
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=95.04 E-value=0.014 Score=53.61 Aligned_cols=26 Identities=27% Similarity=0.308 Sum_probs=23.1
Q ss_pred CCeEEEEEEccCCCcHHHHHHHHHcc
Q 007817 194 ANFCVIPIVGMAGAGKTMLAREVYND 219 (588)
Q Consensus 194 ~~~~vv~I~G~gGiGKTtLA~~v~~~ 219 (588)
.+..+|+|+|+.|+||||+|+.+...
T Consensus 6 ~~~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 6 KHPIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CCCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHC
Confidence 35689999999999999999999874
No 145
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=95.02 E-value=0.011 Score=66.50 Aligned_cols=157 Identities=13% Similarity=0.102 Sum_probs=80.9
Q ss_pred CceeechhhHHHHHHHHhcCCCC-------CCCCeEEEEEEccCCCcHHHHHHHHHcccccccccccEEEEEEeCCcccH
Q 007817 169 RAVYGRDEDKARMLEMVLSDDPT-------TDANFCVIPIVGMAGAGKTMLAREVYNDRAVQNFKFDVKAWVSVSDDFDV 241 (588)
Q Consensus 169 ~~~vGR~~e~~~l~~~L~~~~~~-------~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~wv~v~~~~~~ 241 (588)
..++|-+..++.|.+.+.-.... +-.....+.++|++|+|||+||+.+++.... .|- .++.+.-.
T Consensus 477 ~di~gl~~vk~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lakala~~~~~---~~i---~v~~~~l~-- 548 (806)
T 1ypw_A 477 EDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQA---NFI---SIKGPELL-- 548 (806)
T ss_dssp CSSSCCCCHHHHHHTTTTSSSSSCTTTTCCCCCCCCCCCCBCCTTSSHHHHHHHHHHHHTC---CCC---CCCCSSST--
T ss_pred cccccchhhhhhHHHHHHhhhhchHHHHhcCCCCCceeEEECCCCCCHHHHHHHHHHHhCC---CEE---EEechHhh--
Confidence 45678888888888776432110 1123456889999999999999999986532 221 11111110
Q ss_pred HHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhcCCceeEEecccccc--------------ChhHHHHhhcccCCC--CC
Q 007817 242 LRISRALLESITSTNCDFKTLNEVQVKLRIIVDGKKFLLVLDDVWNE--------------NYNLWEILKAPFMAG--AR 305 (588)
Q Consensus 242 ~~~~~~il~~l~~~~~~~~~~~~l~~~l~~~l~~k~~LLVlDdv~~~--------------~~~~~~~l~~~l~~~--~~ 305 (588)
.... ......+...+...-...+.+|+||++... .......+...+... ..
T Consensus 549 ------------~~~~-g~~~~~i~~~f~~a~~~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~v~~~LL~~ld~~~~~~ 615 (806)
T 1ypw_A 549 ------------TMWF-GESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKK 615 (806)
T ss_dssp ------------TCCT-TTSSHHHHHHHHHHHHHCSBCCCCSSHHHHCCTTTTCCSHHHHHHHHHHHHHHTTCC------
T ss_pred ------------hhhc-CccHHHHHHHHHHHHhcCCeEEEEEChhhhhhhccCCCCCcchhHHHHHHHHHHHHhcccccC
Confidence 0000 011112222222222234679999998531 011223444444322 22
Q ss_pred CcEEEEeecchhhhh-hc----cccceeeCCCCCHHHHHHHHHHhh
Q 007817 306 NSKIIVTTCHSNVAS-MM----GSVEHYNLKLLSDEYCWSVFVKHA 346 (588)
Q Consensus 306 gs~ilvTTR~~~v~~-~~----~~~~~~~l~~L~~~ea~~Lf~~~a 346 (588)
+..||.||....... .+ .-...+.+...+.++-.+++..+.
T Consensus 616 ~v~vI~tTN~~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~l 661 (806)
T 1ypw_A 616 NVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANL 661 (806)
T ss_dssp CCBCCCCCBSCGGGSCTTSSGGGTTSCCCCCCCCCSHHHHHTTTTT
T ss_pred CeEEEEecCCcccCCHHHhCccccCceeecCCCCHHHHHHHHHHHh
Confidence 345566665432221 11 112467777778888888877665
No 146
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=95.02 E-value=0.014 Score=54.17 Aligned_cols=25 Identities=36% Similarity=0.413 Sum_probs=22.2
Q ss_pred CeEEEEEEccCCCcHHHHHHHHHcc
Q 007817 195 NFCVIPIVGMAGAGKTMLAREVYND 219 (588)
Q Consensus 195 ~~~vv~I~G~gGiGKTtLA~~v~~~ 219 (588)
...+++|+|+.|+|||||++.+...
T Consensus 5 ~~~~i~i~G~~GsGKSTl~~~l~~~ 29 (211)
T 3asz_A 5 KPFVIGIAGGTASGKTTLAQALART 29 (211)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHH
Confidence 4479999999999999999999874
No 147
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=95.02 E-value=0.012 Score=52.70 Aligned_cols=23 Identities=22% Similarity=0.696 Sum_probs=19.9
Q ss_pred eEEEEEEccCCCcHHHHHHHHHc
Q 007817 196 FCVIPIVGMAGAGKTMLAREVYN 218 (588)
Q Consensus 196 ~~vv~I~G~gGiGKTtLA~~v~~ 218 (588)
..+++|+|+.|+|||||++.++.
T Consensus 9 gei~~l~G~nGsGKSTl~~~~~~ 31 (171)
T 4gp7_A 9 LSLVVLIGSSGSGKSTFAKKHFK 31 (171)
T ss_dssp SEEEEEECCTTSCHHHHHHHHSC
T ss_pred CEEEEEECCCCCCHHHHHHHHcc
Confidence 36999999999999999997553
No 148
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=95.01 E-value=0.015 Score=53.52 Aligned_cols=26 Identities=31% Similarity=0.447 Sum_probs=22.8
Q ss_pred CeEEEEEEccCCCcHHHHHHHHHccc
Q 007817 195 NFCVIPIVGMAGAGKTMLAREVYNDR 220 (588)
Q Consensus 195 ~~~vv~I~G~gGiGKTtLA~~v~~~~ 220 (588)
...+|+|.|++|+||||+|+.+.+..
T Consensus 14 ~~~~I~l~G~~GsGKsT~~~~L~~~~ 39 (203)
T 1ukz_A 14 QVSVIFVLGGPGAGKGTQCEKLVKDY 39 (203)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 45799999999999999999998743
No 149
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=95.01 E-value=0.012 Score=54.09 Aligned_cols=23 Identities=35% Similarity=0.443 Sum_probs=21.0
Q ss_pred EEEEEEccCCCcHHHHHHHHHcc
Q 007817 197 CVIPIVGMAGAGKTMLAREVYND 219 (588)
Q Consensus 197 ~vv~I~G~gGiGKTtLA~~v~~~ 219 (588)
.+++|+|+.|+|||||++.+...
T Consensus 8 ~ii~l~Gp~GsGKSTl~~~L~~~ 30 (205)
T 3tr0_A 8 NLFIISAPSGAGKTSLVRALVKA 30 (205)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred cEEEEECcCCCCHHHHHHHHHhh
Confidence 58999999999999999999874
No 150
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=94.99 E-value=0.013 Score=54.59 Aligned_cols=27 Identities=26% Similarity=0.310 Sum_probs=24.0
Q ss_pred CCeEEEEEEccCCCcHHHHHHHHHccc
Q 007817 194 ANFCVIPIVGMAGAGKTMLAREVYNDR 220 (588)
Q Consensus 194 ~~~~vv~I~G~gGiGKTtLA~~v~~~~ 220 (588)
...++|.|.|++|+||||.|+.+.+..
T Consensus 27 ~k~kiI~llGpPGsGKgTqa~~L~~~~ 53 (217)
T 3umf_A 27 AKAKVIFVLGGPGSGKGTQCEKLVQKF 53 (217)
T ss_dssp TSCEEEEEECCTTCCHHHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 466899999999999999999999854
No 151
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=94.99 E-value=0.012 Score=56.46 Aligned_cols=24 Identities=25% Similarity=0.286 Sum_probs=21.4
Q ss_pred EEEEEEccCCCcHHHHHHHHHccc
Q 007817 197 CVIPIVGMAGAGKTMLAREVYNDR 220 (588)
Q Consensus 197 ~vv~I~G~gGiGKTtLA~~v~~~~ 220 (588)
.++.|.|++|+||||||+.++...
T Consensus 2 ~li~I~G~~GSGKSTla~~La~~~ 25 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQET 25 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHhcC
Confidence 478999999999999999998754
No 152
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=94.99 E-value=0.012 Score=53.29 Aligned_cols=25 Identities=20% Similarity=0.375 Sum_probs=22.2
Q ss_pred EEEEEEccCCCcHHHHHHHHHcccc
Q 007817 197 CVIPIVGMAGAGKTMLAREVYNDRA 221 (588)
Q Consensus 197 ~vv~I~G~gGiGKTtLA~~v~~~~~ 221 (588)
.+|.|.|++|+||||+++.+.....
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~~l~ 28 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMDNLR 28 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4799999999999999999988554
No 153
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=94.98 E-value=0.013 Score=53.15 Aligned_cols=22 Identities=27% Similarity=0.385 Sum_probs=20.3
Q ss_pred EEEEEEccCCCcHHHHHHHHHc
Q 007817 197 CVIPIVGMAGAGKTMLAREVYN 218 (588)
Q Consensus 197 ~vv~I~G~gGiGKTtLA~~v~~ 218 (588)
.+++|+|+.|+|||||++.+..
T Consensus 3 ~ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHhc
Confidence 5789999999999999999975
No 154
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=94.94 E-value=0.014 Score=53.10 Aligned_cols=24 Identities=25% Similarity=0.375 Sum_probs=21.5
Q ss_pred EEEEEEccCCCcHHHHHHHHHccc
Q 007817 197 CVIPIVGMAGAGKTMLAREVYNDR 220 (588)
Q Consensus 197 ~vv~I~G~gGiGKTtLA~~v~~~~ 220 (588)
.+|+|.|++|+||||+|+.+.+..
T Consensus 4 ~~I~l~G~~GsGKsT~a~~L~~~~ 27 (196)
T 1tev_A 4 LVVFVLGGPGAGKGTQCARIVEKY 27 (196)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 689999999999999999998743
No 155
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=94.93 E-value=0.011 Score=53.34 Aligned_cols=25 Identities=32% Similarity=0.501 Sum_probs=21.8
Q ss_pred eEEEEEEccCCCcHHHHHHHHHccc
Q 007817 196 FCVIPIVGMAGAGKTMLAREVYNDR 220 (588)
Q Consensus 196 ~~vv~I~G~gGiGKTtLA~~v~~~~ 220 (588)
.++|.|+|++|+||||+++.+.+..
T Consensus 11 ~~~i~i~G~~GsGKst~~~~l~~~~ 35 (180)
T 3iij_A 11 LPNILLTGTPGVGKTTLGKELASKS 35 (180)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHh
Confidence 3578899999999999999998754
No 156
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=94.92 E-value=0.016 Score=53.52 Aligned_cols=25 Identities=32% Similarity=0.529 Sum_probs=22.3
Q ss_pred CeEEEEEEccCCCcHHHHHHHHHcc
Q 007817 195 NFCVIPIVGMAGAGKTMLAREVYND 219 (588)
Q Consensus 195 ~~~vv~I~G~gGiGKTtLA~~v~~~ 219 (588)
...+|+|+|++|+||||||+.+...
T Consensus 20 ~~~~i~i~G~~GsGKSTl~~~L~~~ 44 (207)
T 2qt1_A 20 KTFIIGISGVTNSGKTTLAKNLQKH 44 (207)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHh
Confidence 4579999999999999999999874
No 157
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=94.90 E-value=0.014 Score=53.78 Aligned_cols=24 Identities=25% Similarity=0.578 Sum_probs=21.7
Q ss_pred EEEEEEccCCCcHHHHHHHHHccc
Q 007817 197 CVIPIVGMAGAGKTMLAREVYNDR 220 (588)
Q Consensus 197 ~vv~I~G~gGiGKTtLA~~v~~~~ 220 (588)
.+++|+|+.|+|||||++.+....
T Consensus 7 ~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 7 LLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CEEEEECCCCCCHHHHHHHHHHhh
Confidence 589999999999999999998754
No 158
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=94.87 E-value=0.011 Score=54.56 Aligned_cols=25 Identities=24% Similarity=0.417 Sum_probs=22.2
Q ss_pred eEEEEEEccCCCcHHHHHHHHHccc
Q 007817 196 FCVIPIVGMAGAGKTMLAREVYNDR 220 (588)
Q Consensus 196 ~~vv~I~G~gGiGKTtLA~~v~~~~ 220 (588)
..+++|+|++|+|||||++.+....
T Consensus 12 ~~~i~l~G~sGsGKsTl~~~L~~~~ 36 (204)
T 2qor_A 12 IPPLVVCGPSGVGKGTLIKKVLSEF 36 (204)
T ss_dssp CCCEEEECCTTSCHHHHHHHHHHHC
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhC
Confidence 4689999999999999999998754
No 159
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=94.87 E-value=0.19 Score=52.91 Aligned_cols=29 Identities=28% Similarity=0.306 Sum_probs=23.3
Q ss_pred CCeEEEEEEccCCCcHHHHHHHHHccccc
Q 007817 194 ANFCVIPIVGMAGAGKTMLAREVYNDRAV 222 (588)
Q Consensus 194 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~~ 222 (588)
....+|+|+|.+|+||||++..+......
T Consensus 99 ~~~~vI~ivG~~GvGKTTl~~kLA~~l~~ 127 (504)
T 2j37_W 99 GKQNVIMFVGLQGSGKTTTCSKLAYYYQR 127 (504)
T ss_dssp S--EEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 45789999999999999999999876543
No 160
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=94.86 E-value=0.013 Score=52.01 Aligned_cols=26 Identities=27% Similarity=0.440 Sum_probs=22.0
Q ss_pred CeEEEEEEccCCCcHHHHHHHHHccc
Q 007817 195 NFCVIPIVGMAGAGKTMLAREVYNDR 220 (588)
Q Consensus 195 ~~~vv~I~G~gGiGKTtLA~~v~~~~ 220 (588)
...+|+|.|+.|+||||+|+.+....
T Consensus 6 ~~~~i~l~G~~GsGKSTva~~La~~l 31 (168)
T 1zuh_A 6 HMQHLVLIGFMGSGKSSLAQELGLAL 31 (168)
T ss_dssp --CEEEEESCTTSSHHHHHHHHHHHH
T ss_pred ccceEEEECCCCCCHHHHHHHHHHHh
Confidence 45799999999999999999998754
No 161
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=94.82 E-value=0.014 Score=53.13 Aligned_cols=25 Identities=24% Similarity=0.360 Sum_probs=22.0
Q ss_pred eEEEEEEccCCCcHHHHHHHHHccc
Q 007817 196 FCVIPIVGMAGAGKTMLAREVYNDR 220 (588)
Q Consensus 196 ~~vv~I~G~gGiGKTtLA~~v~~~~ 220 (588)
..+|+|.|++|+||||+|+.+.+..
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~La~~l 33 (196)
T 2c95_A 9 TNIIFVVGGPGSGKGTQCEKIVQKY 33 (196)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHh
Confidence 3689999999999999999998743
No 162
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=94.80 E-value=0.012 Score=53.58 Aligned_cols=24 Identities=29% Similarity=0.537 Sum_probs=21.4
Q ss_pred EEEEEEccCCCcHHHHHHHHHccc
Q 007817 197 CVIPIVGMAGAGKTMLAREVYNDR 220 (588)
Q Consensus 197 ~vv~I~G~gGiGKTtLA~~v~~~~ 220 (588)
++++|+|+.|+|||||++.+....
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~~~ 25 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHHhhC
Confidence 478999999999999999998754
No 163
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=94.80 E-value=0.015 Score=53.41 Aligned_cols=23 Identities=35% Similarity=0.576 Sum_probs=20.8
Q ss_pred EEEEEccCCCcHHHHHHHHHccc
Q 007817 198 VIPIVGMAGAGKTMLAREVYNDR 220 (588)
Q Consensus 198 vv~I~G~gGiGKTtLA~~v~~~~ 220 (588)
.|+|.|+.|+||||+++.+.+..
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l 24 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKL 24 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHHhc
Confidence 68999999999999999998854
No 164
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=94.79 E-value=0.015 Score=52.68 Aligned_cols=24 Identities=33% Similarity=0.397 Sum_probs=21.6
Q ss_pred eEEEEEEccCCCcHHHHHHHHHcc
Q 007817 196 FCVIPIVGMAGAGKTMLAREVYND 219 (588)
Q Consensus 196 ~~vv~I~G~gGiGKTtLA~~v~~~ 219 (588)
...|+|+|++|+||||+++.+...
T Consensus 10 ~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 10 GINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp SCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHh
Confidence 468999999999999999999874
No 165
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=94.76 E-value=0.017 Score=55.71 Aligned_cols=25 Identities=20% Similarity=0.458 Sum_probs=22.3
Q ss_pred eEEEEEEccCCCcHHHHHHHHHccc
Q 007817 196 FCVIPIVGMAGAGKTMLAREVYNDR 220 (588)
Q Consensus 196 ~~vv~I~G~gGiGKTtLA~~v~~~~ 220 (588)
..+|.|.|++|+||||+|+.+....
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~~L 28 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAKIL 28 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHHH
Confidence 4689999999999999999998753
No 166
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=94.75 E-value=0.019 Score=57.86 Aligned_cols=111 Identities=8% Similarity=0.091 Sum_probs=60.8
Q ss_pred EEEEEEccCCCcHHHHHHHHHcccccccccccEEEEEEeCCcccHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhcCC
Q 007817 197 CVIPIVGMAGAGKTMLAREVYNDRAVQNFKFDVKAWVSVSDDFDVLRISRALLESITSTNCDFKTLNEVQVKLRIIVDGK 276 (588)
Q Consensus 197 ~vv~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~il~~l~~~~~~~~~~~~l~~~l~~~l~~k 276 (588)
.+++|+|+.|+|||||.+.+....... ....+ +.+.++.... .......+. ..............+...|...
T Consensus 124 g~i~I~GptGSGKTTlL~~l~g~~~~~---~~~~i-~t~ed~~e~~--~~~~~~~v~-q~~~~~~~~~~~~~La~aL~~~ 196 (356)
T 3jvv_A 124 GLVLVTGPTGSGKSTTLAAMLDYLNNT---KYHHI-LTIEDPIEFV--HESKKCLVN-QREVHRDTLGFSEALRSALRED 196 (356)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHHHHH---CCCEE-EEEESSCCSC--CCCSSSEEE-EEEBTTTBSCHHHHHHHHTTSC
T ss_pred CEEEEECCCCCCHHHHHHHHHhcccCC---CCcEE-EEccCcHHhh--hhcccccee-eeeeccccCCHHHHHHHHhhhC
Confidence 599999999999999999887754321 11122 2222221100 000000000 0000011122344788888899
Q ss_pred ceeEEeccccccChhHHHHhhcccCCCCCCcEEEEeecchhhh
Q 007817 277 KFLLVLDDVWNENYNLWEILKAPFMAGARNSKIIVTTCHSNVA 319 (588)
Q Consensus 277 ~~LLVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTTR~~~v~ 319 (588)
+=+|++|... +.+.++.+.... ..|..||+||...+..
T Consensus 197 PdvillDEp~--d~e~~~~~~~~~---~~G~~vl~t~H~~~~~ 234 (356)
T 3jvv_A 197 PDIILVGEMR--DLETIRLALTAA---ETGHLVFGTLHTTSAA 234 (356)
T ss_dssp CSEEEESCCC--SHHHHHHHHHHH---HTTCEEEEEESCSSHH
T ss_pred cCEEecCCCC--CHHHHHHHHHHH---hcCCEEEEEEccChHH
Confidence 9999999995 344555544332 2366688888776554
No 167
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=94.75 E-value=0.019 Score=51.91 Aligned_cols=25 Identities=24% Similarity=0.258 Sum_probs=21.8
Q ss_pred eEEEEEEccCCCcHHHHHHHHHccc
Q 007817 196 FCVIPIVGMAGAGKTMLAREVYNDR 220 (588)
Q Consensus 196 ~~vv~I~G~gGiGKTtLA~~v~~~~ 220 (588)
...|+|.|++|+||||+|+.+.+..
T Consensus 4 g~~I~l~G~~GsGKST~~~~La~~l 28 (186)
T 3cm0_A 4 GQAVIFLGPPGAGKGTQASRLAQEL 28 (186)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3589999999999999999998743
No 168
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=94.74 E-value=0.12 Score=51.34 Aligned_cols=28 Identities=32% Similarity=0.300 Sum_probs=24.1
Q ss_pred CeEEEEEEccCCCcHHHHHHHHHccccc
Q 007817 195 NFCVIPIVGMAGAGKTMLAREVYNDRAV 222 (588)
Q Consensus 195 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~ 222 (588)
...+++|+|+.|+||||++..++.....
T Consensus 128 ~g~vi~lvG~nGaGKTTll~~Lag~l~~ 155 (328)
T 3e70_C 128 KPYVIMFVGFNGSGKTTTIAKLANWLKN 155 (328)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 4589999999999999999999876543
No 169
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=94.72 E-value=0.021 Score=51.72 Aligned_cols=28 Identities=25% Similarity=0.323 Sum_probs=24.2
Q ss_pred CeEEEEEEccCCCcHHHHHHHHHccccc
Q 007817 195 NFCVIPIVGMAGAGKTMLAREVYNDRAV 222 (588)
Q Consensus 195 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~ 222 (588)
...+|.|.|++|+||||+++.+......
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~~L~~~l~~ 39 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIATRLADLLQK 39 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHh
Confidence 4578999999999999999999886643
No 170
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=94.72 E-value=0.081 Score=55.34 Aligned_cols=49 Identities=18% Similarity=0.193 Sum_probs=34.7
Q ss_pred EEEEEEccCCCcHHHHHHHHHcccccccccccEEEEEEeCCcccHHHHHHHHH
Q 007817 197 CVIPIVGMAGAGKTMLAREVYNDRAVQNFKFDVKAWVSVSDDFDVLRISRALL 249 (588)
Q Consensus 197 ~vv~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~il 249 (588)
.++.|.|.+|+||||||..++.+..... -..++|++...+ ...+...++
T Consensus 204 ~liiI~G~pG~GKTtl~l~ia~~~~~~~--g~~Vl~~s~E~s--~~~l~~r~~ 252 (454)
T 2r6a_A 204 DLIIVAARPSVGKTAFALNIAQNVATKT--NENVAIFSLEMS--AQQLVMRML 252 (454)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHHHS--SCCEEEEESSSC--HHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHhC--CCcEEEEECCCC--HHHHHHHHH
Confidence 5899999999999999999988764321 125777776543 345555554
No 171
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=94.71 E-value=0.016 Score=54.37 Aligned_cols=24 Identities=38% Similarity=0.458 Sum_probs=21.4
Q ss_pred EEEEEEccCCCcHHHHHHHHHccc
Q 007817 197 CVIPIVGMAGAGKTMLAREVYNDR 220 (588)
Q Consensus 197 ~vv~I~G~gGiGKTtLA~~v~~~~ 220 (588)
.+|+|+|+.|+||||+++.+....
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~~~ 29 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAEAL 29 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 489999999999999999998743
No 172
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=94.70 E-value=0.018 Score=52.89 Aligned_cols=26 Identities=23% Similarity=0.305 Sum_probs=22.4
Q ss_pred CeEEEEEEccCCCcHHHHHHHHHccc
Q 007817 195 NFCVIPIVGMAGAGKTMLAREVYNDR 220 (588)
Q Consensus 195 ~~~vv~I~G~gGiGKTtLA~~v~~~~ 220 (588)
...+|+|.|++|+||||+|+.+....
T Consensus 19 ~~~~I~l~G~~GsGKST~a~~La~~l 44 (201)
T 2cdn_A 19 SHMRVLLLGPPGAGKGTQAVKLAEKL 44 (201)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 34589999999999999999998744
No 173
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=94.68 E-value=0.011 Score=59.33 Aligned_cols=47 Identities=19% Similarity=0.278 Sum_probs=33.9
Q ss_pred CceeechhhHHHHHHHHhcCCCCCCCCeEEEEEEccCCCcHHHHHHHHHcccc
Q 007817 169 RAVYGRDEDKARMLEMVLSDDPTTDANFCVIPIVGMAGAGKTMLAREVYNDRA 221 (588)
Q Consensus 169 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~ 221 (588)
..++|.+..+..+...+.... ..-+.|+|++|+|||+||+.+++...
T Consensus 24 ~~i~G~~~~~~~l~~~~~~~~------~~~vLl~G~~GtGKT~la~~la~~~~ 70 (350)
T 1g8p_A 24 SAIVGQEDMKLALLLTAVDPG------IGGVLVFGDRGTGKSTAVRALAALLP 70 (350)
T ss_dssp GGSCSCHHHHHHHHHHHHCGG------GCCEEEECCGGGCTTHHHHHHHHHSC
T ss_pred hhccChHHHHHHHHHHhhCCC------CceEEEECCCCccHHHHHHHHHHhCc
Confidence 458999886665544443321 12388999999999999999988553
No 174
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=94.67 E-value=0.019 Score=53.06 Aligned_cols=25 Identities=24% Similarity=0.318 Sum_probs=22.5
Q ss_pred EEEEEEccCCCcHHHHHHHHHcccc
Q 007817 197 CVIPIVGMAGAGKTMLAREVYNDRA 221 (588)
Q Consensus 197 ~vv~I~G~gGiGKTtLA~~v~~~~~ 221 (588)
.+|+|.|++|+||||+|+.+.+...
T Consensus 5 ~~I~i~G~~GsGKsT~~~~L~~~l~ 29 (213)
T 2plr_A 5 VLIAFEGIDGSGKSSQATLLKDWIE 29 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHh
Confidence 6899999999999999999988654
No 175
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=94.66 E-value=0.016 Score=53.25 Aligned_cols=21 Identities=29% Similarity=0.438 Sum_probs=19.9
Q ss_pred EEEEEccCCCcHHHHHHHHHc
Q 007817 198 VIPIVGMAGAGKTMLAREVYN 218 (588)
Q Consensus 198 vv~I~G~gGiGKTtLA~~v~~ 218 (588)
+|+|+|+.|+||||+++.+..
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 689999999999999999987
No 176
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=94.66 E-value=0.016 Score=51.97 Aligned_cols=23 Identities=39% Similarity=0.638 Sum_probs=20.7
Q ss_pred EEEEEccCCCcHHHHHHHHHccc
Q 007817 198 VIPIVGMAGAGKTMLAREVYNDR 220 (588)
Q Consensus 198 vv~I~G~gGiGKTtLA~~v~~~~ 220 (588)
.|.|.|++|+||||+|+.+....
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l 28 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDL 28 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHc
Confidence 58999999999999999998753
No 177
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=94.66 E-value=0.012 Score=53.18 Aligned_cols=24 Identities=25% Similarity=0.462 Sum_probs=21.1
Q ss_pred EEEEEEccCCCcHHHHHHHHHccc
Q 007817 197 CVIPIVGMAGAGKTMLAREVYNDR 220 (588)
Q Consensus 197 ~vv~I~G~gGiGKTtLA~~v~~~~ 220 (588)
.+|+|.|++|+||||+|+.+....
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~l 26 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKAL 26 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHc
Confidence 368999999999999999998743
No 178
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=94.66 E-value=0.019 Score=52.99 Aligned_cols=22 Identities=27% Similarity=0.481 Sum_probs=20.4
Q ss_pred EEEEEEccCCCcHHHHHHHHHc
Q 007817 197 CVIPIVGMAGAGKTMLAREVYN 218 (588)
Q Consensus 197 ~vv~I~G~gGiGKTtLA~~v~~ 218 (588)
.+|+|+|+.|+||||+++.+..
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999976
No 179
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=94.65 E-value=0.034 Score=55.58 Aligned_cols=47 Identities=19% Similarity=0.256 Sum_probs=32.3
Q ss_pred echhhHHHHHHHHhcCCCCCCCCeEEEEEEccCCCcHHHHHHHHHcccc
Q 007817 173 GRDEDKARMLEMVLSDDPTTDANFCVIPIVGMAGAGKTMLAREVYNDRA 221 (588)
Q Consensus 173 GR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~ 221 (588)
+-+.-.+++++.+...-. .+....+.|+|++|+||||+++.++....
T Consensus 3 ~~~~L~~~il~~l~~~i~--~g~~~~i~l~G~~G~GKTTl~~~la~~l~ 49 (359)
T 2ga8_A 3 DTHKLADDVLQLLDNRIE--DNYRVCVILVGSPGSGKSTIAEELCQIIN 49 (359)
T ss_dssp CHHHHHHHHHHHHHHTTT--TCSCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHhc--cCCeeEEEEECCCCCcHHHHHHHHHHHhC
Confidence 334455566666543221 23456799999999999999999987543
No 180
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=94.63 E-value=0.015 Score=51.89 Aligned_cols=28 Identities=25% Similarity=0.274 Sum_probs=23.7
Q ss_pred CeEEEEEEccCCCcHHHHHHHHHccccc
Q 007817 195 NFCVIPIVGMAGAGKTMLAREVYNDRAV 222 (588)
Q Consensus 195 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~ 222 (588)
..++++|+|..|+|||||+..+......
T Consensus 3 ~~~~i~i~G~sGsGKTTl~~~L~~~l~~ 30 (169)
T 1xjc_A 3 AMNVWQVVGYKHSGKTTLMEKWVAAAVR 30 (169)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHhhHh
Confidence 3579999999999999999999886653
No 181
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=94.61 E-value=0.023 Score=51.49 Aligned_cols=25 Identities=24% Similarity=0.324 Sum_probs=22.1
Q ss_pred eEEEEEEccCCCcHHHHHHHHHccc
Q 007817 196 FCVIPIVGMAGAGKTMLAREVYNDR 220 (588)
Q Consensus 196 ~~vv~I~G~gGiGKTtLA~~v~~~~ 220 (588)
..+|+|.|++|+||||+|+.+.+..
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~~l 30 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVRDF 30 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHh
Confidence 4689999999999999999998743
No 182
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=94.61 E-value=0.019 Score=54.93 Aligned_cols=26 Identities=15% Similarity=0.222 Sum_probs=23.0
Q ss_pred CeEEEEEEccCCCcHHHHHHHHHccc
Q 007817 195 NFCVIPIVGMAGAGKTMLAREVYNDR 220 (588)
Q Consensus 195 ~~~vv~I~G~gGiGKTtLA~~v~~~~ 220 (588)
...+|+|.|++|+||||+|+.+....
T Consensus 21 ~~~iI~I~G~~GSGKST~a~~L~~~l 46 (252)
T 1uj2_A 21 EPFLIGVSGGTASGKSSVCAKIVQLL 46 (252)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHh
Confidence 55799999999999999999998754
No 183
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=94.61 E-value=0.014 Score=53.68 Aligned_cols=24 Identities=25% Similarity=0.580 Sum_probs=21.2
Q ss_pred EEEEEEccCCCcHHHHHHHHHccc
Q 007817 197 CVIPIVGMAGAGKTMLAREVYNDR 220 (588)
Q Consensus 197 ~vv~I~G~gGiGKTtLA~~v~~~~ 220 (588)
+.++|+|+.|+|||||++.+....
T Consensus 5 ~~i~lvGpsGaGKSTLl~~L~~~~ 28 (198)
T 1lvg_A 5 RPVVLSGPSGAGKSTLLKKLFQEH 28 (198)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhhC
Confidence 578999999999999999998743
No 184
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=94.60 E-value=0.025 Score=53.79 Aligned_cols=26 Identities=15% Similarity=0.155 Sum_probs=22.8
Q ss_pred CeEEEEEEccCCCcHHHHHHHHHccc
Q 007817 195 NFCVIPIVGMAGAGKTMLAREVYNDR 220 (588)
Q Consensus 195 ~~~vv~I~G~gGiGKTtLA~~v~~~~ 220 (588)
....|+|.|++|+||||+|+.+.+..
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~~~ 53 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKKSH 53 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 45789999999999999999998743
No 185
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=94.57 E-value=0.12 Score=53.28 Aligned_cols=27 Identities=26% Similarity=0.199 Sum_probs=23.2
Q ss_pred eEEEEEEccCCCcHHHHHHHHHccccc
Q 007817 196 FCVIPIVGMAGAGKTMLAREVYNDRAV 222 (588)
Q Consensus 196 ~~vv~I~G~gGiGKTtLA~~v~~~~~~ 222 (588)
..+++|+|++|+||||++..++.....
T Consensus 98 ~~vi~i~G~~GsGKTT~~~~LA~~l~~ 124 (425)
T 2ffh_A 98 RNLWFLVGLQGSGKTTTAAKLALYYKG 124 (425)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 368999999999999999999876654
No 186
>2ck3_D ATP synthase subunit beta\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1cow_D* 1bmf_D* 1e1q_D* 1e1r_D* 1efr_D* 1e79_D* 1h8h_D* 1ohh_D* 1qo1_D 1w0j_D* 1w0k_D* 1h8e_D* 2jdi_D* 2jiz_D* 2jj1_D* 2jj2_D* 2v7q_D* 2wss_D* 2w6j_D 2w6e_D ...
Probab=94.57 E-value=0.17 Score=52.47 Aligned_cols=65 Identities=22% Similarity=0.284 Sum_probs=45.2
Q ss_pred HHHHHHhcCCCCCCCCeEEEEEEccCCCcHHHHHHHHHcccccccccccEEEEEEeCCcc-cHHHHHHHHHHH
Q 007817 180 RMLEMVLSDDPTTDANFCVIPIVGMAGAGKTMLAREVYNDRAVQNFKFDVKAWVSVSDDF-DVLRISRALLES 251 (588)
Q Consensus 180 ~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~wv~v~~~~-~~~~~~~~il~~ 251 (588)
+.++.|..-. +-.-++|+|.+|+|||+|+..+.++... . +-+.++++-+++.. ...++.+++.+.
T Consensus 142 r~ID~l~pig-----kGQr~~Ifgg~G~GKT~L~~~i~~~~~~-~-~~~v~V~~~iGER~rEv~e~~~~~~~~ 207 (482)
T 2ck3_D 142 KVVDLLAPYA-----KGGKIGLFGGAGVGKTVLIMELINNVAK-A-HGGYSVFAGVGERTREGNDLYHEMIES 207 (482)
T ss_dssp HHHHHHSCEE-----TTCEEEEEECTTSSHHHHHHHHHHHTTT-T-CSSEEEEEEESCCHHHHHHHHHHHHHH
T ss_pred EEEecccccc-----cCCeeeeecCCCCChHHHHHHHHHhhHh-h-CCCEEEEEECCCcchHHHHHHHHhhhc
Confidence 4566665332 2357899999999999999999886532 2 34667788787654 456677777654
No 187
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=94.56 E-value=0.018 Score=54.92 Aligned_cols=25 Identities=20% Similarity=0.359 Sum_probs=22.1
Q ss_pred eEEEEEEccCCCcHHHHHHHHHccc
Q 007817 196 FCVIPIVGMAGAGKTMLAREVYNDR 220 (588)
Q Consensus 196 ~~vv~I~G~gGiGKTtLA~~v~~~~ 220 (588)
..+++|+|+.|+|||||++.+.+..
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La~~l 51 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIAQNF 51 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHh
Confidence 4689999999999999999999643
No 188
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=94.51 E-value=0.019 Score=52.62 Aligned_cols=25 Identities=12% Similarity=0.410 Sum_probs=22.0
Q ss_pred eEEEEEEccCCCcHHHHHHHHHccc
Q 007817 196 FCVIPIVGMAGAGKTMLAREVYNDR 220 (588)
Q Consensus 196 ~~vv~I~G~gGiGKTtLA~~v~~~~ 220 (588)
.++++|+|+.|+|||||++.+....
T Consensus 19 g~~ivl~GPSGaGKsTL~~~L~~~~ 43 (197)
T 3ney_A 19 RKTLVLIGASGVGRSHIKNALLSQN 43 (197)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CCEEEEECcCCCCHHHHHHHHHhhC
Confidence 4689999999999999999998753
No 189
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=94.50 E-value=0.13 Score=53.52 Aligned_cols=52 Identities=15% Similarity=0.079 Sum_probs=37.1
Q ss_pred EEEEEEccCCCcHHHHHHHHHcccccccccccEEEEEEeCCcccHHHHHHHHHHHh
Q 007817 197 CVIPIVGMAGAGKTMLAREVYNDRAVQNFKFDVKAWVSVSDDFDVLRISRALLESI 252 (588)
Q Consensus 197 ~vv~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~il~~l 252 (588)
.++.|.|.+|+||||||..++.+..... -..++|++... +...+...++...
T Consensus 201 ~l~ii~G~pg~GKT~lal~ia~~~a~~~--g~~vl~~slE~--~~~~l~~R~~~~~ 252 (444)
T 2q6t_A 201 SLNIIAARPAMGKTAFALTIAQNAALKE--GVGVGIYSLEM--PAAQLTLRMMCSE 252 (444)
T ss_dssp CEEEEEECTTSCHHHHHHHHHHHHHHTT--CCCEEEEESSS--CHHHHHHHHHHHH
T ss_pred cEEEEEeCCCCCHHHHHHHHHHHHHHhC--CCeEEEEECCC--CHHHHHHHHHHHH
Confidence 5899999999999999999988654321 23577777764 3556666665443
No 190
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=94.50 E-value=0.072 Score=64.72 Aligned_cols=84 Identities=17% Similarity=0.152 Sum_probs=56.5
Q ss_pred CeEEEEEEccCCCcHHHHHHHHHcccccccccccEEEEEEeCCcccHHHHHHHHHHHhcCCCC-----CCCCHHHHHHHH
Q 007817 195 NFCVIPIVGMAGAGKTMLAREVYNDRAVQNFKFDVKAWVSVSDDFDVLRISRALLESITSTNC-----DFKTLNEVQVKL 269 (588)
Q Consensus 195 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~il~~l~~~~~-----~~~~~~~l~~~l 269 (588)
..+.+.|+|++|+|||+||.++.......+ ..++|+++...++... ++.++.... ...+.++....+
T Consensus 1426 ~g~~vll~GppGtGKT~LA~ala~ea~~~G---~~v~Fi~~e~~~~~l~-----a~~~G~dl~~l~v~~~~~~E~~l~~~ 1497 (2050)
T 3cmu_A 1426 MGRIVEIYGPESSGKTTLTLQVIAAAQREG---KTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEIC 1497 (2050)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHHHTTT---CCEEEECTTSCCCHHH-----HHHTTCCTTTCEEECCSSHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcC---CcEEEEEcccccCHHH-----HHHcCCCchhceeecCChHHHHHHHH
Confidence 346899999999999999999988654332 3577888888776655 344432211 223445555555
Q ss_pred HHHh-cCCceeEEecccc
Q 007817 270 RIIV-DGKKFLLVLDDVW 286 (588)
Q Consensus 270 ~~~l-~~k~~LLVlDdv~ 286 (588)
.... +.+.-+||+|.+.
T Consensus 1498 ~~lvr~~~~~lVVIDsi~ 1515 (2050)
T 3cmu_A 1498 DALARSGAVDVIVVDSVA 1515 (2050)
T ss_dssp HHHHHHTCCSEEEESCGG
T ss_pred HHHHhcCCCCEEEEcChh
Confidence 5544 3677899999983
No 191
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=94.49 E-value=0.015 Score=51.80 Aligned_cols=24 Identities=33% Similarity=0.401 Sum_probs=21.2
Q ss_pred EEEEEEccCCCcHHHHHHHHHccc
Q 007817 197 CVIPIVGMAGAGKTMLAREVYNDR 220 (588)
Q Consensus 197 ~vv~I~G~gGiGKTtLA~~v~~~~ 220 (588)
.+|.|.|++|+||||+|+.+.+..
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~l 26 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARAL 26 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHh
Confidence 368999999999999999998743
No 192
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=94.47 E-value=0.02 Score=52.36 Aligned_cols=24 Identities=25% Similarity=0.385 Sum_probs=21.6
Q ss_pred EEEEEEccCCCcHHHHHHHHHccc
Q 007817 197 CVIPIVGMAGAGKTMLAREVYNDR 220 (588)
Q Consensus 197 ~vv~I~G~gGiGKTtLA~~v~~~~ 220 (588)
.+|+|.|++|+||||+|+.+.+..
T Consensus 13 ~~I~l~G~~GsGKsT~a~~L~~~l 36 (199)
T 2bwj_A 13 KIIFIIGGPGSGKGTQCEKLVEKY 36 (199)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHh
Confidence 589999999999999999998753
No 193
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=94.45 E-value=0.012 Score=53.02 Aligned_cols=25 Identities=32% Similarity=0.231 Sum_probs=18.0
Q ss_pred eEEEEEEccCCCcHHHHHHHHHccc
Q 007817 196 FCVIPIVGMAGAGKTMLAREVYNDR 220 (588)
Q Consensus 196 ~~vv~I~G~gGiGKTtLA~~v~~~~ 220 (588)
..+|.|.|++|+||||+|+.+.+..
T Consensus 5 ~~~I~l~G~~GsGKST~a~~La~~l 29 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTLHERL 29 (183)
T ss_dssp CCEEEEECCC----CHHHHHHHHHS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhc
Confidence 3589999999999999999998754
No 194
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=94.43 E-value=0.023 Score=56.21 Aligned_cols=27 Identities=26% Similarity=0.229 Sum_probs=23.4
Q ss_pred CeEEEEEEccCCCcHHHHHHHHHcccc
Q 007817 195 NFCVIPIVGMAGAGKTMLAREVYNDRA 221 (588)
Q Consensus 195 ~~~vv~I~G~gGiGKTtLA~~v~~~~~ 221 (588)
...+++|+|+.|+|||||++.+..-..
T Consensus 89 ~g~ivgI~G~sGsGKSTL~~~L~gll~ 115 (312)
T 3aez_A 89 VPFIIGVAGSVAVGKSTTARVLQALLA 115 (312)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCchHHHHHHHHHhhcc
Confidence 457999999999999999999987543
No 195
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=94.42 E-value=0.12 Score=54.71 Aligned_cols=53 Identities=11% Similarity=-0.004 Sum_probs=37.8
Q ss_pred eEEEEEEccCCCcHHHHHHHHHcccccccccccEEEEEEeCCcccHHHHHHHHHHHh
Q 007817 196 FCVIPIVGMAGAGKTMLAREVYNDRAVQNFKFDVKAWVSVSDDFDVLRISRALLESI 252 (588)
Q Consensus 196 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~il~~l 252 (588)
-.++.|.|.+|+||||||.+++.+...+ +=..++|++...+ ..++...++...
T Consensus 242 G~l~li~G~pG~GKT~lal~~a~~~a~~--~g~~vl~~s~E~s--~~~l~~r~~~~~ 294 (503)
T 1q57_A 242 GEVIMVTSGSGMVMSTFVRQQALQWGTA--MGKKVGLAMLEES--VEETAEDLIGLH 294 (503)
T ss_dssp TCEEEEEESSCHHHHHHHHHHHHHHTTT--SCCCEEEEESSSC--HHHHHHHHHHHH
T ss_pred CeEEEEeecCCCCchHHHHHHHHHHHHh--cCCcEEEEeccCC--HHHHHHHHHHHH
Confidence 3688999999999999999998876543 1235778877554 556666665543
No 196
>1fx0_B ATP synthase beta chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_B*
Probab=94.41 E-value=0.089 Score=54.73 Aligned_cols=99 Identities=18% Similarity=0.228 Sum_probs=61.5
Q ss_pred HHHHHHhcCCCCCCCCeEEEEEEccCCCcHHHHHHHHHcccccccccccEEEEEEeCCcc-cHHHHHHHHHHHhcCC---
Q 007817 180 RMLEMVLSDDPTTDANFCVIPIVGMAGAGKTMLAREVYNDRAVQNFKFDVKAWVSVSDDF-DVLRISRALLESITST--- 255 (588)
Q Consensus 180 ~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~wv~v~~~~-~~~~~~~~il~~l~~~--- 255 (588)
+.++.|..-. +-.-++|+|.+|+|||+|+..+.++.... +-+.++++-+++.. ...++..++.+.-...
T Consensus 154 rvID~l~pig-----kGqr~gIfgg~GvGKT~L~~~l~~~~a~~--~~~v~V~~~iGER~rEv~e~~~~~~~~~~l~~~~ 226 (498)
T 1fx0_B 154 KVVNLLAPYR-----RGGKIGLFGGAGVGKTVLIMELINNIAKA--HGGVSVFGGVGERTREGNDLYMEMKESGVINEQN 226 (498)
T ss_dssp TTHHHHSCCC-----TTCCEEEEECSSSSHHHHHHHHHHHTTTT--CSSCEEEEEESCCSHHHHHHHHHHHHTTSSCSST
T ss_pred eEeeeecccc-----cCCeEEeecCCCCCchHHHHHHHHHHHhh--CCCEEEEEEcccCcHHHHHHHHhhhccccccccc
Confidence 3455555432 23578999999999999999998864322 45678888887665 4566777776542111
Q ss_pred ----CC-----CC-CC------HHHHHHHHHHHhc---CCceeEEeccc
Q 007817 256 ----NC-----DF-KT------LNEVQVKLRIIVD---GKKFLLVLDDV 285 (588)
Q Consensus 256 ----~~-----~~-~~------~~~l~~~l~~~l~---~k~~LLVlDdv 285 (588)
.. .. .. .....-.+.++++ ++.+||++||+
T Consensus 227 l~~~rtvvV~~t~d~p~~~R~~~~~~altiAEyfrd~~G~dVLl~~Dsi 275 (498)
T 1fx0_B 227 IAESKVALVYGQMNEPPGARMRVGLTALTMAEYFRDVNEQDVLLFIDNI 275 (498)
T ss_dssp TCCCCEEEEEECTTSCHHHHTTHHHHHHHTHHHHTTTSCCEEEEEEECS
T ss_pred ccccceEEEEeCCCCCHHHHHHHHHHHHHHHHHHHHhcCCcEEEEeccH
Confidence 00 01 11 1122233455554 68999999998
No 197
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=94.41 E-value=0.021 Score=52.78 Aligned_cols=24 Identities=21% Similarity=0.317 Sum_probs=21.5
Q ss_pred EEEEEEccCCCcHHHHHHHHHccc
Q 007817 197 CVIPIVGMAGAGKTMLAREVYNDR 220 (588)
Q Consensus 197 ~vv~I~G~gGiGKTtLA~~v~~~~ 220 (588)
.+++|+|+.|+|||||++.+..-.
T Consensus 21 ei~~l~GpnGsGKSTLl~~l~gl~ 44 (207)
T 1znw_A 21 RVVVLSGPSAVGKSTVVRCLRERI 44 (207)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CEEEEECCCCCCHHHHHHHHHhhC
Confidence 589999999999999999998743
No 198
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=94.40 E-value=0.021 Score=50.55 Aligned_cols=23 Identities=17% Similarity=0.290 Sum_probs=20.6
Q ss_pred EEEEEccCCCcHHHHHHHHHccc
Q 007817 198 VIPIVGMAGAGKTMLAREVYNDR 220 (588)
Q Consensus 198 vv~I~G~gGiGKTtLA~~v~~~~ 220 (588)
.|+|.|++|+||||+|+.+.+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l 24 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSL 24 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999998743
No 199
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=94.38 E-value=0.021 Score=52.80 Aligned_cols=27 Identities=22% Similarity=0.314 Sum_probs=23.4
Q ss_pred eEEEEEEccCCCcHHHHHHHHHccccc
Q 007817 196 FCVIPIVGMAGAGKTMLAREVYNDRAV 222 (588)
Q Consensus 196 ~~vv~I~G~gGiGKTtLA~~v~~~~~~ 222 (588)
..+|+|.|+.|+||||+|+.+.+....
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~L~~~l~~ 35 (215)
T 1nn5_A 9 GALIVLEGVDRAGKSTQSRKLVEALCA 35 (215)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 368999999999999999999886543
No 200
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=94.38 E-value=0.037 Score=51.62 Aligned_cols=26 Identities=23% Similarity=0.507 Sum_probs=22.8
Q ss_pred CeEEEEEEccCCCcHHHHHHHHHccc
Q 007817 195 NFCVIPIVGMAGAGKTMLAREVYNDR 220 (588)
Q Consensus 195 ~~~vv~I~G~gGiGKTtLA~~v~~~~ 220 (588)
....|+|+|.+|+|||||+..+....
T Consensus 37 ~~~~i~ivG~~gvGKTtl~~~l~~~~ 62 (226)
T 2hf9_A 37 GVVAFDFMGAIGSGKTLLIEKLIDNL 62 (226)
T ss_dssp TCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHh
Confidence 45789999999999999999998764
No 201
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=94.38 E-value=0.025 Score=50.87 Aligned_cols=25 Identities=28% Similarity=0.462 Sum_probs=22.2
Q ss_pred eEEEEEEccCCCcHHHHHHHHHccc
Q 007817 196 FCVIPIVGMAGAGKTMLAREVYNDR 220 (588)
Q Consensus 196 ~~vv~I~G~gGiGKTtLA~~v~~~~ 220 (588)
..+|+|+|+.|+||||+++.+....
T Consensus 5 g~~i~l~G~~GsGKST~~~~L~~~l 29 (179)
T 2pez_A 5 GCTVWLTGLSGAGKTTVSMALEEYL 29 (179)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHH
Confidence 4689999999999999999998754
No 202
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=94.38 E-value=0.093 Score=56.54 Aligned_cols=104 Identities=15% Similarity=0.089 Sum_probs=56.1
Q ss_pred EEEEEEccCCCcHHHHHHHHHcccccccccccEEEEEEeCCcccHHHHHHHHHHHhcCCCCCCCCHHHHHHHHH-HHh--
Q 007817 197 CVIPIVGMAGAGKTMLAREVYNDRAVQNFKFDVKAWVSVSDDFDVLRISRALLESITSTNCDFKTLNEVQVKLR-IIV-- 273 (588)
Q Consensus 197 ~vv~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~il~~l~~~~~~~~~~~~l~~~l~-~~l-- 273 (588)
+++.|.|.+|+||||++..+.......+ ..+.+..........+ .+.++.. ..+...+..... .+.
T Consensus 205 ~~~~I~G~pGTGKTt~i~~l~~~l~~~g----~~Vl~~ApT~~Aa~~L----~e~~~~~---a~Tih~ll~~~~~~~~~~ 273 (574)
T 3e1s_A 205 RLVVLTGGPGTGKSTTTKAVADLAESLG----LEVGLCAPTGKAARRL----GEVTGRT---ASTVHRLLGYGPQGFRHN 273 (574)
T ss_dssp SEEEEECCTTSCHHHHHHHHHHHHHHTT----CCEEEEESSHHHHHHH----HHHHTSC---EEEHHHHTTEETTEESCS
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHHhcC----CeEEEecCcHHHHHHh----Hhhhccc---HHHHHHHHcCCcchhhhh
Confidence 5888999999999999999987654332 2333444333222222 2222111 111111000000 000
Q ss_pred ---cCCceeEEeccccccChhHHHHhhcccCCCCCCcEEEEeec
Q 007817 274 ---DGKKFLLVLDDVWNENYNLWEILKAPFMAGARNSKIIVTTC 314 (588)
Q Consensus 274 ---~~k~~LLVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTTR 314 (588)
..+.-+||+|.+...+...+..+...++ .+.++|+.--
T Consensus 274 ~~~~~~~dvlIIDEasml~~~~~~~Ll~~~~---~~~~lilvGD 314 (574)
T 3e1s_A 274 HLEPAPYDLLIVDEVSMMGDALMLSLLAAVP---PGARVLLVGD 314 (574)
T ss_dssp SSSCCSCSEEEECCGGGCCHHHHHHHHTTSC---TTCEEEEEEC
T ss_pred hcccccCCEEEEcCccCCCHHHHHHHHHhCc---CCCEEEEEec
Confidence 0123499999997777667777776665 4667777653
No 203
>3l0o_A Transcription termination factor RHO; helicase, RHO factor, RNA capture mechanism, ATP-binding, hydrolase, nucleotide-binding, RN binding; 2.35A {Thermotoga maritima}
Probab=94.37 E-value=0.014 Score=58.74 Aligned_cols=55 Identities=18% Similarity=0.122 Sum_probs=36.3
Q ss_pred HHHHHHHHhcCCCCCCCCeEEEEEEccCCCcHHHHHHHHHcccccccccccEEEEEEeCCc
Q 007817 178 KARMLEMVLSDDPTTDANFCVIPIVGMAGAGKTMLAREVYNDRAVQNFKFDVKAWVSVSDD 238 (588)
Q Consensus 178 ~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~wv~v~~~ 238 (588)
--++++.+..-. .-.-++|+|.+|+|||+|+..+.+....+...+.+ +++-+++.
T Consensus 162 GiraID~l~Pig-----rGQR~lIfg~~g~GKT~Ll~~Ia~~i~~~~~dv~~-V~~lIGER 216 (427)
T 3l0o_A 162 STRLIDLFAPIG-----KGQRGMIVAPPKAGKTTILKEIANGIAENHPDTIR-IILLIDER 216 (427)
T ss_dssp HHHHHHHHSCCB-----TTCEEEEEECTTCCHHHHHHHHHHHHHHHCTTSEE-EEEECSCC
T ss_pred cchhhhhccccc-----CCceEEEecCCCCChhHHHHHHHHHHhhcCCCeEE-EEEEeccC
Confidence 346677776432 23578999999999999999998865432212333 45666554
No 204
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=94.36 E-value=0.022 Score=51.76 Aligned_cols=23 Identities=35% Similarity=0.632 Sum_probs=21.1
Q ss_pred EEEEEccCCCcHHHHHHHHHccc
Q 007817 198 VIPIVGMAGAGKTMLAREVYNDR 220 (588)
Q Consensus 198 vv~I~G~gGiGKTtLA~~v~~~~ 220 (588)
+|+|.|+.|+||||+|+.+.+..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l 24 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYL 24 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 68999999999999999998865
No 205
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=94.33 E-value=0.026 Score=53.77 Aligned_cols=26 Identities=15% Similarity=0.252 Sum_probs=22.4
Q ss_pred CeEEEEEEccCCCcHHHHHHHHHccc
Q 007817 195 NFCVIPIVGMAGAGKTMLAREVYNDR 220 (588)
Q Consensus 195 ~~~vv~I~G~gGiGKTtLA~~v~~~~ 220 (588)
...+++|.|+.|+|||||++.+....
T Consensus 24 ~g~iigI~G~~GsGKSTl~k~L~~~l 49 (245)
T 2jeo_A 24 RPFLIGVSGGTASGKSTVCEKIMELL 49 (245)
T ss_dssp CSEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 34699999999999999999987743
No 206
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=94.32 E-value=0.022 Score=53.23 Aligned_cols=25 Identities=24% Similarity=0.276 Sum_probs=21.9
Q ss_pred eEEEEEEccCCCcHHHHHHHHHccc
Q 007817 196 FCVIPIVGMAGAGKTMLAREVYNDR 220 (588)
Q Consensus 196 ~~vv~I~G~gGiGKTtLA~~v~~~~ 220 (588)
...|.|.|++|+||||+|+.+.+..
T Consensus 4 ~~~I~l~G~~GsGKsT~a~~La~~l 28 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAPNLQERF 28 (220)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHc
Confidence 3579999999999999999998743
No 207
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=94.30 E-value=0.029 Score=51.24 Aligned_cols=26 Identities=27% Similarity=0.445 Sum_probs=23.1
Q ss_pred CCeEEEEEEccCCCcHHHHHHHHHcc
Q 007817 194 ANFCVIPIVGMAGAGKTMLAREVYND 219 (588)
Q Consensus 194 ~~~~vv~I~G~gGiGKTtLA~~v~~~ 219 (588)
....+|+|+|+.|+||||+++.+.+.
T Consensus 10 ~~~~iIgltG~~GSGKSTva~~L~~~ 35 (192)
T 2grj_A 10 HHHMVIGVTGKIGTGKSTVCEILKNK 35 (192)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred ccceEEEEECCCCCCHHHHHHHHHHh
Confidence 35689999999999999999999874
No 208
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=94.27 E-value=0.12 Score=54.08 Aligned_cols=27 Identities=30% Similarity=0.348 Sum_probs=23.7
Q ss_pred CeEEEEEEccCCCcHHHHHHHHHcccc
Q 007817 195 NFCVIPIVGMAGAGKTMLAREVYNDRA 221 (588)
Q Consensus 195 ~~~vv~I~G~gGiGKTtLA~~v~~~~~ 221 (588)
...+++|+|..|+|||||++.++....
T Consensus 292 ~GeVI~LVGpNGSGKTTLl~~LAgll~ 318 (503)
T 2yhs_A 292 APFVILMVGVNGVGKTTTIGKLARQFE 318 (503)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCcccHHHHHHHHHHHhh
Confidence 457999999999999999999987654
No 209
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=94.25 E-value=0.022 Score=52.59 Aligned_cols=27 Identities=15% Similarity=0.085 Sum_probs=23.4
Q ss_pred eEEEEEEccCCCcHHHHHHHHHccccc
Q 007817 196 FCVIPIVGMAGAGKTMLAREVYNDRAV 222 (588)
Q Consensus 196 ~~vv~I~G~gGiGKTtLA~~v~~~~~~ 222 (588)
..+|+|.|+.|+||||+|+.+.+....
T Consensus 10 ~~~I~l~G~~GsGKST~~~~L~~~l~~ 36 (212)
T 2wwf_A 10 GKFIVFEGLDRSGKSTQSKLLVEYLKN 36 (212)
T ss_dssp SCEEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 468999999999999999999886543
No 210
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=94.22 E-value=0.021 Score=53.61 Aligned_cols=25 Identities=20% Similarity=0.341 Sum_probs=22.0
Q ss_pred eEEEEEEccCCCcHHHHHHHHHccc
Q 007817 196 FCVIPIVGMAGAGKTMLAREVYNDR 220 (588)
Q Consensus 196 ~~vv~I~G~gGiGKTtLA~~v~~~~ 220 (588)
...|.|.|++|+||||+|+.+.+..
T Consensus 7 ~~~I~l~G~~GsGKsT~a~~La~~l 31 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVSSRITTHF 31 (227)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHc
Confidence 3689999999999999999998743
No 211
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=94.22 E-value=0.028 Score=49.52 Aligned_cols=24 Identities=33% Similarity=0.455 Sum_probs=21.9
Q ss_pred EEEEEEccCCCcHHHHHHHHHccc
Q 007817 197 CVIPIVGMAGAGKTMLAREVYNDR 220 (588)
Q Consensus 197 ~vv~I~G~gGiGKTtLA~~v~~~~ 220 (588)
.+++|+|+.|+|||||++.++.-.
T Consensus 34 e~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 34 IMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHHhC
Confidence 699999999999999999998754
No 212
>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}
Probab=94.21 E-value=0.026 Score=55.87 Aligned_cols=40 Identities=13% Similarity=0.148 Sum_probs=28.7
Q ss_pred CCeEEEEEEccCCCcHHHHHHHHHcccccccccccEEEEEEeC
Q 007817 194 ANFCVIPIVGMAGAGKTMLAREVYNDRAVQNFKFDVKAWVSVS 236 (588)
Q Consensus 194 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~wv~v~ 236 (588)
.+.+||+|.|-|||||||.+..+..-....+ + .+.-|.+.
T Consensus 46 ~~aKVIAIaGKGGVGKTTtavNLA~aLA~~G--k-kVllID~D 85 (314)
T 3fwy_A 46 TGAKVFAVYGKGGIGKSTTSSNLSAAFSILG--K-RVLQIGCD 85 (314)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHHHHTT--C-CEEEEEES
T ss_pred CCceEEEEECCCccCHHHHHHHHHHHHHHCC--C-eEEEEecC
Confidence 3568999999999999999988776654433 1 34455554
No 213
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=94.16 E-value=0.023 Score=52.74 Aligned_cols=23 Identities=30% Similarity=0.524 Sum_probs=20.3
Q ss_pred EEEEEccCCCcHHHHHHHHHccc
Q 007817 198 VIPIVGMAGAGKTMLAREVYNDR 220 (588)
Q Consensus 198 vv~I~G~gGiGKTtLA~~v~~~~ 220 (588)
.|+|.|++|+||||+|+.+....
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999998754
No 214
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=94.15 E-value=0.078 Score=50.13 Aligned_cols=40 Identities=20% Similarity=0.305 Sum_probs=28.4
Q ss_pred EEEEEEccCCCcHHHHHHHHHcccccccccccEEEEEEeCCc
Q 007817 197 CVIPIVGMAGAGKTMLAREVYNDRAVQNFKFDVKAWVSVSDD 238 (588)
Q Consensus 197 ~vv~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~wv~v~~~ 238 (588)
.++.|.|.+|+|||+||.+++.+...+ .-..+++++...+
T Consensus 31 ~l~~i~G~pG~GKT~l~l~~~~~~~~~--~~~~v~~~s~E~~ 70 (251)
T 2zts_A 31 TTVLLTGGTGTGKTTFAAQFIYKGAEE--YGEPGVFVTLEER 70 (251)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHHHH--HCCCEEEEESSSC
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHHHHh--cCCCceeecccCC
Confidence 588999999999999998876543222 2335667766543
No 215
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=94.13 E-value=0.16 Score=49.71 Aligned_cols=87 Identities=18% Similarity=0.051 Sum_probs=47.4
Q ss_pred eEEEEEEccCCCcHHHHHHHHHcccccccccccEEEEEEeCCc-ccHHHHHHHHHHHhcCCC---CCCCCHHHHHHHHHH
Q 007817 196 FCVIPIVGMAGAGKTMLAREVYNDRAVQNFKFDVKAWVSVSDD-FDVLRISRALLESITSTN---CDFKTLNEVQVKLRI 271 (588)
Q Consensus 196 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~wv~v~~~-~~~~~~~~~il~~l~~~~---~~~~~~~~l~~~l~~ 271 (588)
..+++|+|.+|+||||++..++......+ ..+.++..... ......+....+..+... ....+..++......
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~~~~g---~~v~l~~~D~~r~~a~~ql~~~~~~~~v~v~~~~~~~~p~~~~~~~l~ 174 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFYKKKG---FKVGLVGADVYRPAALEQLQQLGQQIGVPVYGEPGEKDVVGIAKRGVE 174 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHHHHTT---CCEEEEECCCSSSHHHHHHHHHHHHHTCCEECCTTCCCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCC---CeEEEEecCCCCHHHHHHHHHHhccCCeEEEecCCCCCHHHHHHHHHH
Confidence 47899999999999999999987654332 23445554322 222333344444433221 112344444333333
Q ss_pred Hhc-CCceeEEeccc
Q 007817 272 IVD-GKKFLLVLDDV 285 (588)
Q Consensus 272 ~l~-~k~~LLVlDdv 285 (588)
.++ ..-=++++|-.
T Consensus 175 ~~~~~~~D~ViIDTp 189 (297)
T 1j8m_F 175 KFLSEKMEIIIVDTA 189 (297)
T ss_dssp HHHHTTCSEEEEECC
T ss_pred HHHhCCCCEEEEeCC
Confidence 333 33347888865
No 216
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=94.13 E-value=0.026 Score=55.60 Aligned_cols=28 Identities=25% Similarity=0.240 Sum_probs=23.6
Q ss_pred CeEEEEEEccCCCcHHHHHHHHHccccc
Q 007817 195 NFCVIPIVGMAGAGKTMLAREVYNDRAV 222 (588)
Q Consensus 195 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~ 222 (588)
...+++|+|++|+|||||+..++.-...
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~~ 128 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQN 128 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHh
Confidence 3469999999999999999999876543
No 217
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=94.11 E-value=0.022 Score=53.28 Aligned_cols=24 Identities=29% Similarity=0.487 Sum_probs=21.4
Q ss_pred EEEEEEccCCCcHHHHHHHHHccc
Q 007817 197 CVIPIVGMAGAGKTMLAREVYNDR 220 (588)
Q Consensus 197 ~vv~I~G~gGiGKTtLA~~v~~~~ 220 (588)
.+++|+|+.|+|||||++.+....
T Consensus 24 ~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 24 YPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHHS
T ss_pred CEEEEECCCCCCHHHHHHHHHhhC
Confidence 589999999999999999998743
No 218
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=94.07 E-value=0.027 Score=51.30 Aligned_cols=24 Identities=21% Similarity=0.308 Sum_probs=21.5
Q ss_pred EEEEEccCCCcHHHHHHHHHcccc
Q 007817 198 VIPIVGMAGAGKTMLAREVYNDRA 221 (588)
Q Consensus 198 vv~I~G~gGiGKTtLA~~v~~~~~ 221 (588)
.|+|.|+.|+||||+++.+.+...
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~ 25 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYLE 25 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 589999999999999999988653
No 219
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=94.06 E-value=0.026 Score=52.47 Aligned_cols=23 Identities=22% Similarity=0.455 Sum_probs=20.2
Q ss_pred EEEEEccCCCcHHHHHHHHHccc
Q 007817 198 VIPIVGMAGAGKTMLAREVYNDR 220 (588)
Q Consensus 198 vv~I~G~gGiGKTtLA~~v~~~~ 220 (588)
.|+|.|++|+||||+|+.+....
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999998743
No 220
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=94.05 E-value=0.028 Score=51.51 Aligned_cols=24 Identities=21% Similarity=0.340 Sum_probs=21.9
Q ss_pred EEEEEEccCCCcHHHHHHHHHccc
Q 007817 197 CVIPIVGMAGAGKTMLAREVYNDR 220 (588)
Q Consensus 197 ~vv~I~G~gGiGKTtLA~~v~~~~ 220 (588)
..|+|.|+.|+||||+++.+.+..
T Consensus 5 ~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 5 ALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHTS
T ss_pred cEEEEEcCCCCCHHHHHHHHHHHH
Confidence 589999999999999999998854
No 221
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=94.04 E-value=0.032 Score=54.32 Aligned_cols=24 Identities=29% Similarity=0.649 Sum_probs=21.7
Q ss_pred CeEEEEEEccCCCcHHHHHHHHHc
Q 007817 195 NFCVIPIVGMAGAGKTMLAREVYN 218 (588)
Q Consensus 195 ~~~vv~I~G~gGiGKTtLA~~v~~ 218 (588)
...+|+|.|+.|+||||+|+.+..
T Consensus 74 ~~~iI~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 74 GLYVLGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 457999999999999999999983
No 222
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=94.04 E-value=0.027 Score=53.89 Aligned_cols=24 Identities=33% Similarity=0.459 Sum_probs=21.8
Q ss_pred EEEEEEccCCCcHHHHHHHHHccc
Q 007817 197 CVIPIVGMAGAGKTMLAREVYNDR 220 (588)
Q Consensus 197 ~vv~I~G~gGiGKTtLA~~v~~~~ 220 (588)
.+|+|+|+.|+|||||++.+....
T Consensus 28 ~~I~I~G~~GsGKSTl~k~La~~L 51 (252)
T 4e22_A 28 PVITVDGPSGAGKGTLCKALAESL 51 (252)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHHhc
Confidence 589999999999999999999644
No 223
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=94.03 E-value=0.021 Score=53.35 Aligned_cols=25 Identities=16% Similarity=0.126 Sum_probs=21.9
Q ss_pred eEEEEEEccCCCcHHHHHHHHHccc
Q 007817 196 FCVIPIVGMAGAGKTMLAREVYNDR 220 (588)
Q Consensus 196 ~~vv~I~G~gGiGKTtLA~~v~~~~ 220 (588)
...|.|.|++|+||||+|+.+.+..
T Consensus 5 ~~~I~l~G~~GsGKsT~~~~La~~l 29 (222)
T 1zak_A 5 PLKVMISGAPASGKGTQCELIKTKY 29 (222)
T ss_dssp SCCEEEEESTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3578999999999999999998754
No 224
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=94.01 E-value=0.028 Score=52.53 Aligned_cols=25 Identities=20% Similarity=0.292 Sum_probs=22.1
Q ss_pred eEEEEEEccCCCcHHHHHHHHHccc
Q 007817 196 FCVIPIVGMAGAGKTMLAREVYNDR 220 (588)
Q Consensus 196 ~~vv~I~G~gGiGKTtLA~~v~~~~ 220 (588)
-.+++|+|+.|+|||||.+.+....
T Consensus 16 G~ii~l~GpsGsGKSTLlk~L~g~~ 40 (219)
T 1s96_A 16 GTLYIVSAPSGAGKSSLIQALLKTQ 40 (219)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CcEEEEECCCCCCHHHHHHHHhccC
Confidence 3689999999999999999998754
No 225
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=94.00 E-value=0.14 Score=50.17 Aligned_cols=86 Identities=16% Similarity=0.080 Sum_probs=46.1
Q ss_pred EEEEEEccCCCcHHHHHHHHHcccccccccccEEEEEEeCCcc-cHHHHHHHHHHHhcCCCC---CCCCHHHHHH-HHHH
Q 007817 197 CVIPIVGMAGAGKTMLAREVYNDRAVQNFKFDVKAWVSVSDDF-DVLRISRALLESITSTNC---DFKTLNEVQV-KLRI 271 (588)
Q Consensus 197 ~vv~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~wv~v~~~~-~~~~~~~~il~~l~~~~~---~~~~~~~l~~-~l~~ 271 (588)
.+++|+|.+|+||||++..++......+ ..+.++...-.. .....+..+.+..+...- ...+..+++. .+..
T Consensus 99 ~~i~i~g~~G~GKTT~~~~la~~~~~~~---~~v~l~~~d~~~~~~~~ql~~~~~~~~l~~~~~~~~~~p~~l~~~~l~~ 175 (295)
T 1ls1_A 99 NLWFLVGLQGSGKTTTAAKLALYYKGKG---RRPLLVAADTQRPAAREQLRLLGEKVGVPVLEVMDGESPESIRRRVEEK 175 (295)
T ss_dssp EEEEEECCTTTTHHHHHHHHHHHHHHTT---CCEEEEECCSSCHHHHHHHHHHHHHHTCCEEECCTTCCHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcC---CeEEEecCCcccHhHHHHHHHhcccCCeEEEEcCCCCCHHHHHHHHHHH
Confidence 6899999999999999999987664322 234444443211 111223333444332211 1233444433 3443
Q ss_pred HhcCCceeEEeccc
Q 007817 272 IVDGKKFLLVLDDV 285 (588)
Q Consensus 272 ~l~~k~~LLVlDdv 285 (588)
......=++|+|--
T Consensus 176 ~~~~~~D~viiDtp 189 (295)
T 1ls1_A 176 ARLEARDLILVDTA 189 (295)
T ss_dssp HHHHTCCEEEEECC
T ss_pred HHhCCCCEEEEeCC
Confidence 33344557888865
No 226
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=94.00 E-value=0.032 Score=51.67 Aligned_cols=26 Identities=27% Similarity=0.322 Sum_probs=22.8
Q ss_pred eEEEEEEccCCCcHHHHHHHHHcccc
Q 007817 196 FCVIPIVGMAGAGKTMLAREVYNDRA 221 (588)
Q Consensus 196 ~~vv~I~G~gGiGKTtLA~~v~~~~~ 221 (588)
..+|.|.|+.|+||||+++.+.....
T Consensus 25 ~~~i~~~G~~GsGKsT~~~~l~~~l~ 50 (211)
T 1m7g_A 25 GLTIWLTGLSASGKSTLAVELEHQLV 50 (211)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhc
Confidence 37899999999999999999987554
No 227
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=93.94 E-value=0.065 Score=52.91 Aligned_cols=26 Identities=27% Similarity=0.240 Sum_probs=22.8
Q ss_pred CeEEEEEEccCCCcHHHHHHHHHccc
Q 007817 195 NFCVIPIVGMAGAGKTMLAREVYNDR 220 (588)
Q Consensus 195 ~~~vv~I~G~gGiGKTtLA~~v~~~~ 220 (588)
...+++|+|+.|+|||||++.+....
T Consensus 79 ~g~iigI~G~~GsGKSTl~~~L~~~l 104 (308)
T 1sq5_A 79 IPYIISIAGSVAVGKSTTARVLQALL 104 (308)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 45799999999999999999998754
No 228
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=93.92 E-value=0.016 Score=53.73 Aligned_cols=24 Identities=33% Similarity=0.501 Sum_probs=21.4
Q ss_pred EEEEEccCCCcHHHHHHHHHcccc
Q 007817 198 VIPIVGMAGAGKTMLAREVYNDRA 221 (588)
Q Consensus 198 vv~I~G~gGiGKTtLA~~v~~~~~ 221 (588)
+|+|.|+.|+||||+++.+.....
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~ 25 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFR 25 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHH
Confidence 689999999999999999987654
No 229
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=93.92 E-value=0.27 Score=46.17 Aligned_cols=90 Identities=16% Similarity=0.173 Sum_probs=46.5
Q ss_pred EEEEEEccCCCcHHHHHHHHHccc-ccccccccEEEEEEeCCcccHHHHHHHHHHHhcCCCC---------------C--
Q 007817 197 CVIPIVGMAGAGKTMLAREVYNDR-AVQNFKFDVKAWVSVSDDFDVLRISRALLESITSTNC---------------D-- 258 (588)
Q Consensus 197 ~vv~I~G~gGiGKTtLA~~v~~~~-~~~~~~f~~~~wv~v~~~~~~~~~~~~il~~l~~~~~---------------~-- 258 (588)
..+.|.|+.|+||||+.....-+. ...+..-...+.+..........+...+...++.... .
T Consensus 77 ~~~~i~g~TGsGKTt~~~~~~~~~~~~~~~~~~~~~l~~~p~~~la~q~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 156 (235)
T 3llm_A 77 SVVIIRGATGCGKTTQVPQFILDDFIQNDRAAECNIVVTQPRRISAVSVAERVAFERGEEPGKSCGYSVRFESILPRPHA 156 (235)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHHHHHTTCGGGCEEEEEESSHHHHHHHHHHHHHTTTCCTTSSEEEEETTEEECCCSSS
T ss_pred CEEEEEeCCCCCcHHhHHHHHhcchhhcCCCCceEEEEeccchHHHHHHHHHHHHHhccccCceEEEeechhhccCCCCC
Confidence 478999999999998765554332 1111011233333344333344455555544432211 0
Q ss_pred ---CCCHHHHHHHHHHHhcCCceeEEeccccc
Q 007817 259 ---FKTLNEVQVKLRIIVDGKKFLLVLDDVWN 287 (588)
Q Consensus 259 ---~~~~~~l~~~l~~~l~~k~~LLVlDdv~~ 287 (588)
..+...+...+...+. +--+||+|.++.
T Consensus 157 ~Ivv~Tpg~l~~~l~~~l~-~~~~lVlDEah~ 187 (235)
T 3llm_A 157 SIMFCTVGVLLRKLEAGIR-GISHVIVDEIHE 187 (235)
T ss_dssp EEEEEEHHHHHHHHHHCCT-TCCEEEECCTTS
T ss_pred eEEEECHHHHHHHHHhhhc-CCcEEEEECCcc
Confidence 0123445555544333 334889999975
No 230
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=93.91 E-value=0.044 Score=50.90 Aligned_cols=40 Identities=20% Similarity=0.281 Sum_probs=29.3
Q ss_pred hhhHHHHHHHHhcCCCCCCCCeEEEEEEccCCCcHHHHHHHHHccc
Q 007817 175 DEDKARMLEMVLSDDPTTDANFCVIPIVGMAGAGKTMLAREVYNDR 220 (588)
Q Consensus 175 ~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~ 220 (588)
++..+.+...+... ...+++|+|.+|+|||||+..+....
T Consensus 15 ~~~~~~~~~~~~~~------~~~~i~i~G~~g~GKTTl~~~l~~~~ 54 (221)
T 2wsm_A 15 KRLAEKNREALRES------GTVAVNIMGAIGSGKTLLIERTIERI 54 (221)
T ss_dssp HHHHHHHHHHHHHH------TCEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhccc------CceEEEEEcCCCCCHHHHHHHHHHHh
Confidence 34455555554322 45899999999999999999998764
No 231
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=93.91 E-value=0.032 Score=52.15 Aligned_cols=43 Identities=19% Similarity=0.249 Sum_probs=29.7
Q ss_pred eEEEEEEccCCCcHHHHHHHHHcccccc---cccccEEEEEEeCCc
Q 007817 196 FCVIPIVGMAGAGKTMLAREVYNDRAVQ---NFKFDVKAWVSVSDD 238 (588)
Q Consensus 196 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~---~~~f~~~~wv~v~~~ 238 (588)
-.+++|+|+.|+|||||++.++...... ...-...+|+.-...
T Consensus 25 G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~~ 70 (231)
T 4a74_A 25 QAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENT 70 (231)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCCC
Confidence 3699999999999999999997633221 001335677776543
No 232
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=93.90 E-value=0.036 Score=51.61 Aligned_cols=23 Identities=22% Similarity=0.449 Sum_probs=20.9
Q ss_pred eEEEEEEccCCCcHHHHHHHHHc
Q 007817 196 FCVIPIVGMAGAGKTMLAREVYN 218 (588)
Q Consensus 196 ~~vv~I~G~gGiGKTtLA~~v~~ 218 (588)
..+|+|.|+.|+||||+++.+..
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 36899999999999999999975
No 233
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=93.87 E-value=0.048 Score=49.31 Aligned_cols=26 Identities=31% Similarity=0.239 Sum_probs=22.2
Q ss_pred CeEEEEEEccCCCcHHHHHHHHHccc
Q 007817 195 NFCVIPIVGMAGAGKTMLAREVYNDR 220 (588)
Q Consensus 195 ~~~vv~I~G~gGiGKTtLA~~v~~~~ 220 (588)
....|+|+|.+|+|||||...+....
T Consensus 47 ~~~~i~vvG~~g~GKSsll~~l~~~~ 72 (193)
T 2ged_A 47 YQPSIIIAGPQNSGKTSLLTLLTTDS 72 (193)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 44678999999999999999998753
No 234
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=93.83 E-value=0.22 Score=53.76 Aligned_cols=24 Identities=25% Similarity=0.364 Sum_probs=21.4
Q ss_pred EEEEEEccCCCcHHHHHHHHHccc
Q 007817 197 CVIPIVGMAGAGKTMLAREVYNDR 220 (588)
Q Consensus 197 ~vv~I~G~gGiGKTtLA~~v~~~~ 220 (588)
.+++|+|+.|+|||||++.+..-.
T Consensus 370 ~~~~ivG~sGsGKSTll~~l~g~~ 393 (582)
T 3b5x_A 370 KTVALVGRSGSGKSTIANLFTRFY 393 (582)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 589999999999999999997654
No 235
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=93.81 E-value=0.12 Score=62.77 Aligned_cols=84 Identities=17% Similarity=0.160 Sum_probs=59.3
Q ss_pred eEEEEEEccCCCcHHHHHHHHHcccccccccccEEEEEEeCCcccHHHHHHHHHHHhcCCCC-----CCCCHHHHHHHHH
Q 007817 196 FCVIPIVGMAGAGKTMLAREVYNDRAVQNFKFDVKAWVSVSDDFDVLRISRALLESITSTNC-----DFKTLNEVQVKLR 270 (588)
Q Consensus 196 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~il~~l~~~~~-----~~~~~~~l~~~l~ 270 (588)
-.++.|.|++|+||||||.+++......+ ..++|++....++... ++.++.... +..+.+++...++
T Consensus 383 G~lilI~G~pGsGKTtLaLqia~~~a~~G---~~vlyis~E~s~~~~~-----a~~lGvd~~~L~I~~~~~~e~il~~~~ 454 (2050)
T 3cmu_A 383 GRIVEIYGPESSGKTTLTLQVIAAAQREG---KTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEICD 454 (2050)
T ss_dssp TSEEEEECCTTSSHHHHHHHHHHHHHTTT---CCEEEECTTSCCCHHH-----HHHTTCCTTTCEEECCSSHHHHHHHHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHhcC---CeEEEEEcCCCHHHHH-----HHHcCCCHHHeEEeCCCCHHHHHHHHH
Confidence 36999999999999999999988765432 3678999888776542 455544322 3456677766666
Q ss_pred HHh-cCCceeEEeccccc
Q 007817 271 IIV-DGKKFLLVLDDVWN 287 (588)
Q Consensus 271 ~~l-~~k~~LLVlDdv~~ 287 (588)
... +.+.-+||+|.+..
T Consensus 455 ~lv~~~~~~lIVIDSL~a 472 (2050)
T 3cmu_A 455 ALARSGAVDVIVVDSVAA 472 (2050)
T ss_dssp HHHHHTCCSEEEESCGGG
T ss_pred HHHHhcCCcEEEECCHHH
Confidence 554 35677999999854
No 236
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=93.78 E-value=0.032 Score=52.90 Aligned_cols=22 Identities=27% Similarity=0.443 Sum_probs=20.3
Q ss_pred EEEEEEccCCCcHHHHHHHHHc
Q 007817 197 CVIPIVGMAGAGKTMLAREVYN 218 (588)
Q Consensus 197 ~vv~I~G~gGiGKTtLA~~v~~ 218 (588)
.+++|+|+.|+|||||++.++.
T Consensus 31 ~~~~l~GpnGsGKSTLl~~i~~ 52 (251)
T 2ehv_A 31 TTVLLTGGTGTGKTTFAAQFIY 52 (251)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred cEEEEEeCCCCCHHHHHHHHHH
Confidence 5899999999999999999884
No 237
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=93.72 E-value=0.041 Score=54.66 Aligned_cols=26 Identities=19% Similarity=0.341 Sum_probs=22.7
Q ss_pred CeEEEEEEccCCCcHHHHHHHHHccc
Q 007817 195 NFCVIPIVGMAGAGKTMLAREVYNDR 220 (588)
Q Consensus 195 ~~~vv~I~G~gGiGKTtLA~~v~~~~ 220 (588)
..++|.|+|+.|+||||||..++...
T Consensus 39 ~~~lIvI~GPTgsGKTtLa~~LA~~l 64 (339)
T 3a8t_A 39 KEKLLVLMGATGTGKSRLSIDLAAHF 64 (339)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHTTS
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHC
Confidence 34699999999999999999999843
No 238
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=93.71 E-value=0.046 Score=50.08 Aligned_cols=40 Identities=10% Similarity=0.061 Sum_probs=28.8
Q ss_pred hHHHHHHHHhcCCCCCCCCeEEEEEEccCCCcHHHHHHHHHcccc
Q 007817 177 DKARMLEMVLSDDPTTDANFCVIPIVGMAGAGKTMLAREVYNDRA 221 (588)
Q Consensus 177 e~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~ 221 (588)
-+..+..++... +....+.|+|++|+||||+|..+++...
T Consensus 44 f~~~l~~~~~~i-----Pkkn~ili~GPPGtGKTt~a~ala~~l~ 83 (212)
T 1tue_A 44 FLGALKSFLKGT-----PKKNCLVFCGPANTGKSYFGMSFIHFIQ 83 (212)
T ss_dssp HHHHHHHHHHTC-----TTCSEEEEESCGGGCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhcC-----CcccEEEEECCCCCCHHHHHHHHHHHhC
Confidence 355666666431 1234689999999999999999988653
No 239
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=93.69 E-value=0.026 Score=52.58 Aligned_cols=24 Identities=17% Similarity=0.317 Sum_probs=21.3
Q ss_pred EEEEEEccCCCcHHHHHHHHHccc
Q 007817 197 CVIPIVGMAGAGKTMLAREVYNDR 220 (588)
Q Consensus 197 ~vv~I~G~gGiGKTtLA~~v~~~~ 220 (588)
..|.|.|++|+||||+|+.+....
T Consensus 6 ~~I~l~G~~GsGKsT~a~~La~~l 29 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFIKKEY 29 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 478899999999999999998754
No 240
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=93.65 E-value=0.034 Score=51.41 Aligned_cols=23 Identities=26% Similarity=0.554 Sum_probs=20.6
Q ss_pred EEEEEccCCCcHHHHHHHHHccc
Q 007817 198 VIPIVGMAGAGKTMLAREVYNDR 220 (588)
Q Consensus 198 vv~I~G~gGiGKTtLA~~v~~~~ 220 (588)
+|.|.|++|+||||.|+.+.+..
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~ 24 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEK 24 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 57899999999999999999854
No 241
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=93.57 E-value=0.042 Score=54.11 Aligned_cols=27 Identities=33% Similarity=0.389 Sum_probs=23.4
Q ss_pred CeEEEEEEccCCCcHHHHHHHHHcccc
Q 007817 195 NFCVIPIVGMAGAGKTMLAREVYNDRA 221 (588)
Q Consensus 195 ~~~vv~I~G~gGiGKTtLA~~v~~~~~ 221 (588)
...+++|+|+.|+|||||++.++....
T Consensus 99 ~g~vi~lvG~nGsGKTTll~~Lag~l~ 125 (302)
T 3b9q_A 99 KPAVIMIVGVNGGGKTTSLGKLAHRLK 125 (302)
T ss_dssp SCEEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 347999999999999999999987654
No 242
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=93.57 E-value=0.12 Score=62.13 Aligned_cols=84 Identities=17% Similarity=0.138 Sum_probs=58.4
Q ss_pred eEEEEEEccCCCcHHHHHHHHHcccccccccccEEEEEEeCCcccHHHHHHHHHHHhcCCCC-----CCCCHHHHHHHHH
Q 007817 196 FCVIPIVGMAGAGKTMLAREVYNDRAVQNFKFDVKAWVSVSDDFDVLRISRALLESITSTNC-----DFKTLNEVQVKLR 270 (588)
Q Consensus 196 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~il~~l~~~~~-----~~~~~~~l~~~l~ 270 (588)
-.++.|.|++|+||||||.+++...... -..++|++....++... ++.++.... ...+.+++...+.
T Consensus 383 G~lilI~G~pGsGKTtLaLq~a~~~~~~---G~~vlyis~E~s~~~~~-----a~~lGvd~~~L~i~~~~~~e~~l~~l~ 454 (1706)
T 3cmw_A 383 GRIVEIYGPESSGKTTLTLQVIAAAQRE---GKTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEICD 454 (1706)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHHHHHHT---TCCEEEECTTSCCCHHH-----HHHTTCCGGGCEEECCSSHHHHHHHHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHHh---CCCeEEEEccCchHHHH-----HHHcCCCHHHeEEcCCCCHHHHHHHHH
Confidence 3699999999999999999998765433 24688999888776542 445543321 2345666666666
Q ss_pred HHh-cCCceeEEeccccc
Q 007817 271 IIV-DGKKFLLVLDDVWN 287 (588)
Q Consensus 271 ~~l-~~k~~LLVlDdv~~ 287 (588)
... +.+.-+||+|.+..
T Consensus 455 ~lv~~~~~~lVVIDSL~a 472 (1706)
T 3cmw_A 455 ALARSGAVDVIVVDSVAA 472 (1706)
T ss_dssp HHHHHTCCSEEEESCSTT
T ss_pred HHHHhcCCCEEEECCHHH
Confidence 544 35667999999853
No 243
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=93.55 E-value=0.022 Score=50.99 Aligned_cols=26 Identities=27% Similarity=0.355 Sum_probs=22.7
Q ss_pred EEEEEEccCCCcHHHHHHHHHccccc
Q 007817 197 CVIPIVGMAGAGKTMLAREVYNDRAV 222 (588)
Q Consensus 197 ~vv~I~G~gGiGKTtLA~~v~~~~~~ 222 (588)
.+++|+|..|+|||||++.+..-...
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~~ 28 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILRE 28 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhhh
Confidence 58999999999999999999876554
No 244
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=93.55 E-value=0.033 Score=50.77 Aligned_cols=24 Identities=25% Similarity=0.301 Sum_probs=21.1
Q ss_pred EEEEEccCCCcHHHHHHHHHcccc
Q 007817 198 VIPIVGMAGAGKTMLAREVYNDRA 221 (588)
Q Consensus 198 vv~I~G~gGiGKTtLA~~v~~~~~ 221 (588)
+++|+|+.|+|||||++.++....
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~~~ 26 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEVLK 26 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhhcc
Confidence 689999999999999999887553
No 245
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=93.54 E-value=0.036 Score=52.43 Aligned_cols=24 Identities=21% Similarity=0.308 Sum_probs=21.5
Q ss_pred EEEEEEccCCCcHHHHHHHHHccc
Q 007817 197 CVIPIVGMAGAGKTMLAREVYNDR 220 (588)
Q Consensus 197 ~vv~I~G~gGiGKTtLA~~v~~~~ 220 (588)
.+++|+|+.|+|||||.+.+..-.
T Consensus 32 e~~~iiG~nGsGKSTLl~~l~Gl~ 55 (235)
T 3tif_A 32 EFVSIMGPSGSGKSTMLNIIGCLD 55 (235)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCcHHHHHHHHhcCC
Confidence 589999999999999999998644
No 246
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=93.53 E-value=0.037 Score=52.47 Aligned_cols=24 Identities=21% Similarity=0.252 Sum_probs=21.7
Q ss_pred EEEEEEccCCCcHHHHHHHHHccc
Q 007817 197 CVIPIVGMAGAGKTMLAREVYNDR 220 (588)
Q Consensus 197 ~vv~I~G~gGiGKTtLA~~v~~~~ 220 (588)
.+++|+|+.|+|||||.+.+..-.
T Consensus 25 e~~~liG~nGsGKSTLl~~l~Gl~ 48 (240)
T 2onk_A 25 DYCVLLGPTGAGKSVFLELIAGIV 48 (240)
T ss_dssp SEEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEEECCCCCCHHHHHHHHhCCC
Confidence 689999999999999999998743
No 247
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=93.48 E-value=0.037 Score=51.90 Aligned_cols=24 Identities=25% Similarity=0.306 Sum_probs=21.3
Q ss_pred EEEEEEccCCCcHHHHHHHHHccc
Q 007817 197 CVIPIVGMAGAGKTMLAREVYNDR 220 (588)
Q Consensus 197 ~vv~I~G~gGiGKTtLA~~v~~~~ 220 (588)
.+++|+|+.|+|||||.+.++.-.
T Consensus 31 e~~~iiG~nGsGKSTLl~~l~Gl~ 54 (224)
T 2pcj_A 31 EFVSIIGASGSGKSTLLYILGLLD 54 (224)
T ss_dssp CEEEEEECTTSCHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 489999999999999999998643
No 248
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=93.47 E-value=0.04 Score=50.65 Aligned_cols=23 Identities=30% Similarity=0.463 Sum_probs=21.0
Q ss_pred EEEEEccCCCcHHHHHHHHHccc
Q 007817 198 VIPIVGMAGAGKTMLAREVYNDR 220 (588)
Q Consensus 198 vv~I~G~gGiGKTtLA~~v~~~~ 220 (588)
+|+|.|+.|+||||+|+.+....
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~l 26 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAAL 26 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhc
Confidence 89999999999999999998743
No 249
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=93.45 E-value=0.027 Score=53.04 Aligned_cols=23 Identities=22% Similarity=0.479 Sum_probs=16.0
Q ss_pred EEEEEEccCCCcHHHHHHHHH-cc
Q 007817 197 CVIPIVGMAGAGKTMLAREVY-ND 219 (588)
Q Consensus 197 ~vv~I~G~gGiGKTtLA~~v~-~~ 219 (588)
.+++|+|+.|+|||||++.+. ..
T Consensus 28 ~ii~l~Gp~GsGKSTl~~~L~~~~ 51 (231)
T 3lnc_A 28 VILVLSSPSGCGKTTVANKLLEKQ 51 (231)
T ss_dssp CEEEEECSCC----CHHHHHHC--
T ss_pred CEEEEECCCCCCHHHHHHHHHhcC
Confidence 589999999999999999998 53
No 250
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=93.42 E-value=0.041 Score=54.79 Aligned_cols=24 Identities=42% Similarity=0.458 Sum_probs=21.6
Q ss_pred EEEEEEccCCCcHHHHHHHHHccc
Q 007817 197 CVIPIVGMAGAGKTMLAREVYNDR 220 (588)
Q Consensus 197 ~vv~I~G~gGiGKTtLA~~v~~~~ 220 (588)
.+|+|.|+.|+||||||..++...
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l 31 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKF 31 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHT
T ss_pred ceEEEECCCcCcHHHHHHHHHHHc
Confidence 589999999999999999998743
No 251
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=93.41 E-value=0.077 Score=53.54 Aligned_cols=40 Identities=23% Similarity=0.302 Sum_probs=29.3
Q ss_pred HHHHHHHHhcCCCCCCCCeEEEEEEccCCCcHHHHHHHHHcccc
Q 007817 178 KARMLEMVLSDDPTTDANFCVIPIVGMAGAGKTMLAREVYNDRA 221 (588)
Q Consensus 178 ~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~ 221 (588)
...+.+.+.... ++..+|+|+|.+|+|||||+..+.....
T Consensus 65 ~~~~~~~~~~~~----~~~~~I~i~G~~G~GKSTl~~~L~~~l~ 104 (355)
T 3p32_A 65 AQQLLLRLLPDS----GNAHRVGITGVPGVGKSTAIEALGMHLI 104 (355)
T ss_dssp HHHHHHHHGGGC----CCSEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred HHHHHHHhHhhc----CCceEEEEECCCCCCHHHHHHHHHHHHH
Confidence 444555554322 3568999999999999999999876553
No 252
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=93.39 E-value=0.048 Score=58.27 Aligned_cols=112 Identities=13% Similarity=0.101 Sum_probs=59.3
Q ss_pred EEEEEEccCCCcHHHHHHHHHcccccccccccEEEEEEeCCcccHHHHHHHHHHHhcCC---------------CCCCCC
Q 007817 197 CVIPIVGMAGAGKTMLAREVYNDRAVQNFKFDVKAWVSVSDDFDVLRISRALLESITST---------------NCDFKT 261 (588)
Q Consensus 197 ~vv~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~il~~l~~~---------------~~~~~~ 261 (588)
.+++|.|++|+|||||++.++......+ ..++++...+. ...+...+ ..++.. .+..-+
T Consensus 282 ~i~~i~G~~GsGKSTLl~~l~g~~~~~G---~~vi~~~~ee~--~~~l~~~~-~~~g~~~~~~~~~g~~~~~~~~p~~LS 355 (525)
T 1tf7_A 282 SIILATGATGTGKTLLVSRFVENACANK---ERAILFAYEES--RAQLLRNA-YSWGMDFEEMERQNLLKIVCAYPESAG 355 (525)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHHTTT---CCEEEEESSSC--HHHHHHHH-HTTSCCHHHHHHTTSEEECCCCGGGSC
T ss_pred cEEEEEeCCCCCHHHHHHHHHHHHHhCC---CCEEEEEEeCC--HHHHHHHH-HHcCCCHHHHHhCCCEEEEEeccccCC
Confidence 5899999999999999999987544322 12455554433 22222222 111110 001123
Q ss_pred HHHHHH-HHHHHhcCCceeEEeccccccChh-----HHHH---hhcccCCCCCCcEEEEeecch
Q 007817 262 LNEVQV-KLRIIVDGKKFLLVLDDVWNENYN-----LWEI---LKAPFMAGARNSKIIVTTCHS 316 (588)
Q Consensus 262 ~~~l~~-~l~~~l~~k~~LLVlDdv~~~~~~-----~~~~---l~~~l~~~~~gs~ilvTTR~~ 316 (588)
..+.+. .+...+..++-+||+|-+..-+.. .... +...+. ..|..||+||.+.
T Consensus 356 ~g~~q~~~~a~~l~~~p~llilDp~~~Ld~~~~~~~~~~~i~~ll~~l~--~~g~tvilvsh~~ 417 (525)
T 1tf7_A 356 LEDHLQIIKSEINDFKPARIAIDSLSALARGVSNNAFRQFVIGVTGYAK--QEEITGLFTNTSD 417 (525)
T ss_dssp HHHHHHHHHHHHHTTCCSEEEEECHHHHTSSSCHHHHHHHHHHHHHHHH--HTTCEEEEEEECS
T ss_pred HHHHHHHHHHHHHhhCCCEEEEcChHHHHhhCChHHHHHHHHHHHHHHH--hCCCEEEEEECcc
Confidence 334443 445556678889999954221111 1222 222222 2467788888654
No 253
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=93.39 E-value=0.047 Score=53.54 Aligned_cols=23 Identities=26% Similarity=0.320 Sum_probs=21.2
Q ss_pred EEEEEEccCCCcHHHHHHHHHcc
Q 007817 197 CVIPIVGMAGAGKTMLAREVYND 219 (588)
Q Consensus 197 ~vv~I~G~gGiGKTtLA~~v~~~ 219 (588)
++|+|.|+.|+||||||..++..
T Consensus 4 ~~i~i~GptgsGKt~la~~La~~ 26 (322)
T 3exa_A 4 KLVAIVGPTAVGKTKTSVMLAKR 26 (322)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHT
T ss_pred cEEEEECCCcCCHHHHHHHHHHh
Confidence 68999999999999999999874
No 254
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=93.38 E-value=0.039 Score=51.93 Aligned_cols=25 Identities=28% Similarity=0.409 Sum_probs=22.0
Q ss_pred eEEEEEEccCCCcHHHHHHHHHccc
Q 007817 196 FCVIPIVGMAGAGKTMLAREVYNDR 220 (588)
Q Consensus 196 ~~vv~I~G~gGiGKTtLA~~v~~~~ 220 (588)
..+|+|.|++|+||||+|+.+....
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~~l 33 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLARAL 33 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3589999999999999999998744
No 255
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=93.36 E-value=0.041 Score=49.30 Aligned_cols=27 Identities=19% Similarity=0.324 Sum_probs=23.3
Q ss_pred CeEEEEEEccCCCcHHHHHHHHHcccc
Q 007817 195 NFCVIPIVGMAGAGKTMLAREVYNDRA 221 (588)
Q Consensus 195 ~~~vv~I~G~gGiGKTtLA~~v~~~~~ 221 (588)
..++++|+|+.|+|||||+..+.....
T Consensus 5 ~~~~i~i~G~sGsGKTTl~~~l~~~l~ 31 (174)
T 1np6_A 5 MIPLLAFAAWSGTGKTTLLKKLIPALC 31 (174)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred cceEEEEEeCCCCCHHHHHHHHHHhcc
Confidence 357899999999999999999987654
No 256
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=93.32 E-value=0.033 Score=53.15 Aligned_cols=24 Identities=29% Similarity=0.450 Sum_probs=21.5
Q ss_pred EEEEEEccCCCcHHHHHHHHHccc
Q 007817 197 CVIPIVGMAGAGKTMLAREVYNDR 220 (588)
Q Consensus 197 ~vv~I~G~gGiGKTtLA~~v~~~~ 220 (588)
.+|+|+|+.|+||||+++.+....
T Consensus 49 ~~i~l~G~~GsGKSTl~~~La~~l 72 (250)
T 3nwj_A 49 RSMYLVGMMGSGKTTVGKIMARSL 72 (250)
T ss_dssp CCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHhc
Confidence 479999999999999999998744
No 257
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=93.29 E-value=0.1 Score=48.14 Aligned_cols=109 Identities=10% Similarity=0.054 Sum_probs=55.7
Q ss_pred eEEEEEEccCCCcHHHHHHHHHcccccccccccEEEEEEeCC-cccHHHHHHHHHHHhcCCCC--CCCCHHHHHHHHHHH
Q 007817 196 FCVIPIVGMAGAGKTMLAREVYNDRAVQNFKFDVKAWVSVSD-DFDVLRISRALLESITSTNC--DFKTLNEVQVKLRII 272 (588)
Q Consensus 196 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~wv~v~~-~~~~~~~~~~il~~l~~~~~--~~~~~~~l~~~l~~~ 272 (588)
-.+..++|..|.||||.+.....+....+ ..+.++-..-+ ..... .+...++.... ...+.. .+...
T Consensus 28 G~l~vitG~MgsGKTT~lL~~a~r~~~~g--~kVli~k~~~d~R~ge~----~i~s~~g~~~~a~~~~~~~----~~~~~ 97 (214)
T 2j9r_A 28 GWIEVICGSMFSGKSEELIRRVRRTQFAK--QHAIVFKPCIDNRYSEE----DVVSHNGLKVKAVPVSASK----DIFKH 97 (214)
T ss_dssp CEEEEEECSTTSCHHHHHHHHHHHHHHTT--CCEEEEECC---------------------CCEEECSSGG----GGGGG
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHHHCC--CEEEEEEeccCCcchHH----HHHhhcCCeeEEeecCCHH----HHHHH
Confidence 36889999999999999988888765543 34444322211 11222 33333332221 112222 12222
Q ss_pred hcCCceeEEeccccccChhHHHHhhcccCCCCCCcEEEEeecchh
Q 007817 273 VDGKKFLLVLDDVWNENYNLWEILKAPFMAGARNSKIIVTTCHSN 317 (588)
Q Consensus 273 l~~k~~LLVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTTR~~~ 317 (588)
+.++--+|++|.+.--+.+..+.+... .+ .|..||+|.++.+
T Consensus 98 ~~~~~dvViIDEaQF~~~~~V~~l~~l-~~--~~~~Vi~~Gl~~D 139 (214)
T 2j9r_A 98 ITEEMDVIAIDEVQFFDGDIVEVVQVL-AN--RGYRVIVAGLDQD 139 (214)
T ss_dssp CCSSCCEEEECCGGGSCTTHHHHHHHH-HH--TTCEEEEEECSBC
T ss_pred HhcCCCEEEEECcccCCHHHHHHHHHH-hh--CCCEEEEEecccc
Confidence 233334999999976554555444332 22 2678999998654
No 258
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=93.27 E-value=0.053 Score=53.10 Aligned_cols=25 Identities=32% Similarity=0.238 Sum_probs=22.3
Q ss_pred CeEEEEEEccCCCcHHHHHHHHHcc
Q 007817 195 NFCVIPIVGMAGAGKTMLAREVYND 219 (588)
Q Consensus 195 ~~~vv~I~G~gGiGKTtLA~~v~~~ 219 (588)
..+++.|.|+.|+||||||..+++.
T Consensus 9 ~~~~i~i~GptgsGKt~la~~La~~ 33 (316)
T 3foz_A 9 LPKAIFLMGPTASGKTALAIELRKI 33 (316)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCcEEEEECCCccCHHHHHHHHHHh
Confidence 3578999999999999999999874
No 259
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=93.27 E-value=0.045 Score=54.14 Aligned_cols=23 Identities=35% Similarity=0.361 Sum_probs=21.3
Q ss_pred EEEEEEccCCCcHHHHHHHHHcc
Q 007817 197 CVIPIVGMAGAGKTMLAREVYND 219 (588)
Q Consensus 197 ~vv~I~G~gGiGKTtLA~~v~~~ 219 (588)
.+|.|+|+.|+||||||..++..
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~ 28 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADA 28 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 58999999999999999999874
No 260
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=93.24 E-value=0.045 Score=50.79 Aligned_cols=23 Identities=26% Similarity=0.267 Sum_probs=20.3
Q ss_pred EEEEEccCCCcHHHHHHHHHccc
Q 007817 198 VIPIVGMAGAGKTMLAREVYNDR 220 (588)
Q Consensus 198 vv~I~G~gGiGKTtLA~~v~~~~ 220 (588)
.|+|.|++|+||||+|+.+.+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKY 24 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999998744
No 261
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=93.24 E-value=0.045 Score=51.22 Aligned_cols=23 Identities=30% Similarity=0.319 Sum_probs=20.4
Q ss_pred EEEEEccCCCcHHHHHHHHHccc
Q 007817 198 VIPIVGMAGAGKTMLAREVYNDR 220 (588)
Q Consensus 198 vv~I~G~gGiGKTtLA~~v~~~~ 220 (588)
.|.|.|++|+||||+|+.+....
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~l 24 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKY 24 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58899999999999999998743
No 262
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=93.22 E-value=0.046 Score=56.51 Aligned_cols=27 Identities=33% Similarity=0.431 Sum_probs=23.4
Q ss_pred CCeEEEEEEccCCCcHHHHHHHHHccc
Q 007817 194 ANFCVIPIVGMAGAGKTMLAREVYNDR 220 (588)
Q Consensus 194 ~~~~vv~I~G~gGiGKTtLA~~v~~~~ 220 (588)
....+|.|+|++|+||||+|+.+....
T Consensus 256 ~~~~lIil~G~pGSGKSTla~~L~~~~ 282 (416)
T 3zvl_A 256 PNPEVVVAVGFPGAGKSTFIQEHLVSA 282 (416)
T ss_dssp SSCCEEEEESCTTSSHHHHHHHHTGGG
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHhc
Confidence 356799999999999999999998754
No 263
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=93.19 E-value=0.044 Score=51.61 Aligned_cols=25 Identities=24% Similarity=0.227 Sum_probs=21.9
Q ss_pred eEEEEEEccCCCcHHHHHHHHHccc
Q 007817 196 FCVIPIVGMAGAGKTMLAREVYNDR 220 (588)
Q Consensus 196 ~~vv~I~G~gGiGKTtLA~~v~~~~ 220 (588)
...|.|.|++|+||||+|+.+.+..
T Consensus 16 ~~~I~l~G~~GsGKsT~a~~La~~l 40 (233)
T 1ak2_A 16 GVRAVLLGPPGAGKGTQAPKLAKNF 40 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3578999999999999999998754
No 264
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=93.16 E-value=0.13 Score=57.29 Aligned_cols=157 Identities=15% Similarity=0.136 Sum_probs=77.3
Q ss_pred CceeechhhHHHHHHHHhcCCC-------CCCCCeEEEEEEccCCCcHHHHHHHHHcccccccccccEEEEEEeCCcccH
Q 007817 169 RAVYGRDEDKARMLEMVLSDDP-------TTDANFCVIPIVGMAGAGKTMLAREVYNDRAVQNFKFDVKAWVSVSDDFDV 241 (588)
Q Consensus 169 ~~~vGR~~e~~~l~~~L~~~~~-------~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~wv~v~~~~~~ 241 (588)
..+.|-++.+++|.+.+.-+.. .+....+-+.++|++|.|||.||+.+++.... . ++.++.
T Consensus 477 ~diggl~~~k~~l~e~v~~p~~~p~~f~~~g~~~~~gvLl~GPPGtGKT~lAkaiA~e~~~---~-----f~~v~~---- 544 (806)
T 3cf2_A 477 EDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQA---N-----FISIKG---- 544 (806)
T ss_dssp TTCCSCHHHHHHHTTTTTTTTTCSGGGSSSCCCCCSCCEEESSTTSSHHHHHHHHHHTTTC---E-----EEECCH----
T ss_pred HHhCCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEecCCCCCchHHHHHHHHHhCC---c-----eEEecc----
Confidence 4567788877777776543311 01233456789999999999999999996532 1 122321
Q ss_pred HHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhcCCceeEEeccccccCh--------------hHHHHhhcccCC--CCC
Q 007817 242 LRISRALLESITSTNCDFKTLNEVQVKLRIIVDGKKFLLVLDDVWNENY--------------NLWEILKAPFMA--GAR 305 (588)
Q Consensus 242 ~~~~~~il~~l~~~~~~~~~~~~l~~~l~~~l~~k~~LLVlDdv~~~~~--------------~~~~~l~~~l~~--~~~ 305 (588)
.+++.... ..+...+...+...-+..+++|+||+++.--. ....+++..+.. ...
T Consensus 545 ----~~l~s~~v-----Gese~~vr~lF~~Ar~~~P~IifiDEiDsl~~~R~~~~~~~~~~~~rv~~~lL~~mdg~~~~~ 615 (806)
T 3cf2_A 545 ----PELLTMWF-----GESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKK 615 (806)
T ss_dssp ----HHHHTTTC-----SSCHHHHHHHHHHHHTTCSEEEECSCGGGCC--------------CHHHHHHHHHHHSSCSSS
T ss_pred ----chhhcccc-----chHHHHHHHHHHHHHHcCCceeechhhhHHhhccCCCCCCCchHHHHHHHHHHHHHhCCCCCC
Confidence 11221111 12222333333333356789999999853110 012233332222 122
Q ss_pred CcEEEEeecchhhhhh-c----cccceeeCCCCCHHHHHHHHHHhh
Q 007817 306 NSKIIVTTCHSNVASM-M----GSVEHYNLKLLSDEYCWSVFVKHA 346 (588)
Q Consensus 306 gs~ilvTTR~~~v~~~-~----~~~~~~~l~~L~~~ea~~Lf~~~a 346 (588)
+.-||-||..+..... + .-...+.+..-+.++-.++|..+.
T Consensus 616 ~V~vi~aTN~p~~lD~AllRpgRfd~~i~v~lPd~~~R~~il~~~l 661 (806)
T 3cf2_A 616 NVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANL 661 (806)
T ss_dssp SEEEECC-CCSSSSCHHHHSTTTSCCEEEC-----CHHHHTTTTTS
T ss_pred CEEEEEeCCCchhCCHhHcCCCcceEEEEECCcCHHHHHHHHHHHh
Confidence 3334445544432211 1 123567776666666666666554
No 265
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=93.14 E-value=0.34 Score=50.33 Aligned_cols=51 Identities=18% Similarity=0.118 Sum_probs=35.8
Q ss_pred eEEEEEEccCCCcHHHHHHHHHcccccccccccEEEEEEeCCcccHHHHHHHHHHH
Q 007817 196 FCVIPIVGMAGAGKTMLAREVYNDRAVQNFKFDVKAWVSVSDDFDVLRISRALLES 251 (588)
Q Consensus 196 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~il~~ 251 (588)
-.++.|.|.+|+||||||.+++.+...++ ..++|++...+ ..++...++..
T Consensus 197 G~liiIaG~pG~GKTtlal~ia~~~a~~g---~~vl~fSlEms--~~ql~~R~~~~ 247 (444)
T 3bgw_A 197 RNFVLIAARPSMGKTAFALKQAKNMSDND---DVVNLHSLEMG--KKENIKRLIVT 247 (444)
T ss_dssp SCEEEEEECSSSSHHHHHHHHHHHHHHTT---CEEEEECSSSC--TTHHHHHHHHH
T ss_pred CcEEEEEeCCCCChHHHHHHHHHHHHHcC---CEEEEEECCCC--HHHHHHHHHHH
Confidence 35899999999999999999988764432 35777776543 44455555543
No 266
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=93.13 E-value=0.045 Score=53.07 Aligned_cols=23 Identities=30% Similarity=0.371 Sum_probs=20.8
Q ss_pred EEEEEEccCCCcHHHHHHHHHcc
Q 007817 197 CVIPIVGMAGAGKTMLAREVYND 219 (588)
Q Consensus 197 ~vv~I~G~gGiGKTtLA~~v~~~ 219 (588)
.+++|+|+.|+|||||++.+..-
T Consensus 35 e~~~iiGpnGsGKSTLl~~l~Gl 57 (275)
T 3gfo_A 35 EVTAILGGNGVGKSTLFQNFNGI 57 (275)
T ss_dssp SEEEEECCTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHHcC
Confidence 48999999999999999999764
No 267
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=93.12 E-value=0.062 Score=58.46 Aligned_cols=45 Identities=18% Similarity=0.279 Sum_probs=37.2
Q ss_pred CceeechhhHHHHHHHHhcCCCCCCCCeEEEEEEccCCCcHHHHHHHHHcccc
Q 007817 169 RAVYGRDEDKARMLEMVLSDDPTTDANFCVIPIVGMAGAGKTMLAREVYNDRA 221 (588)
Q Consensus 169 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~ 221 (588)
..++|.+.-++.+...+... ..+.|+|++|+||||||+.++....
T Consensus 41 ~~i~G~~~~l~~l~~~i~~g--------~~vll~Gp~GtGKTtlar~ia~~l~ 85 (604)
T 3k1j_A 41 DQVIGQEHAVEVIKTAANQK--------RHVLLIGEPGTGKSMLGQAMAELLP 85 (604)
T ss_dssp HHCCSCHHHHHHHHHHHHTT--------CCEEEECCTTSSHHHHHHHHHHTSC
T ss_pred ceEECchhhHhhccccccCC--------CEEEEEeCCCCCHHHHHHHHhccCC
Confidence 45899988888888777643 3789999999999999999988653
No 268
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=93.09 E-value=0.065 Score=47.19 Aligned_cols=23 Identities=17% Similarity=0.400 Sum_probs=20.8
Q ss_pred EEEEEEccCCCcHHHHHHHHHcc
Q 007817 197 CVIPIVGMAGAGKTMLAREVYND 219 (588)
Q Consensus 197 ~vv~I~G~gGiGKTtLA~~v~~~ 219 (588)
..|+|+|.+|+|||||...+...
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~~ 26 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTGE 26 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 57899999999999999999874
No 269
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=93.09 E-value=0.046 Score=52.63 Aligned_cols=24 Identities=33% Similarity=0.472 Sum_probs=21.5
Q ss_pred EEEEEEccCCCcHHHHHHHHHccc
Q 007817 197 CVIPIVGMAGAGKTMLAREVYNDR 220 (588)
Q Consensus 197 ~vv~I~G~gGiGKTtLA~~v~~~~ 220 (588)
.+++|+|+.|+|||||.+.++.-.
T Consensus 33 e~~~liG~nGsGKSTLlk~l~Gl~ 56 (262)
T 1b0u_A 33 DVISIIGSSGSGKSTFLRCINFLE 56 (262)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 589999999999999999998643
No 270
>3vr4_D V-type sodium ATPase subunit D; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_D* 3vr2_D* 3vr5_D 3vr6_D*
Probab=93.08 E-value=0.12 Score=53.34 Aligned_cols=89 Identities=11% Similarity=0.181 Sum_probs=51.8
Q ss_pred EEEEEEccCCCcHHHHHHHHHccccccccccc-EEEEEEeCCcc-cHHHHHHHHHHHhcCC-------CCCCCCHHH---
Q 007817 197 CVIPIVGMAGAGKTMLAREVYNDRAVQNFKFD-VKAWVSVSDDF-DVLRISRALLESITST-------NCDFKTLNE--- 264 (588)
Q Consensus 197 ~vv~I~G~gGiGKTtLA~~v~~~~~~~~~~f~-~~~wv~v~~~~-~~~~~~~~il~~l~~~-------~~~~~~~~~--- 264 (588)
.-++|.|.+|+|||+|+.++.++....+.+-+ .++++-+++.. .+.++..++.+.=... ..+......
T Consensus 152 Qr~~Ifgg~G~GKt~L~~~Ia~~~~~~~d~~~~~~V~~~iGeR~~Ev~e~~~~~~~~g~~~rtvvV~atsd~p~~~r~~a 231 (465)
T 3vr4_D 152 QKLPVFSGSGLPHKELAAQIARQATVLDSSDDFAVVFAAIGITFEEAEFFMEDFRQTGAIDRSVMFMNLANDPAIERIAT 231 (465)
T ss_dssp CBCCEEECTTSCHHHHHHHHHHHCBCSSCSSCEEEEEEEEEECHHHHHHHHHHHHHHTGGGGEEEEEEETTSCHHHHHHH
T ss_pred CEEEEeCCCCcChHHHHHHHHHHHHhccCCCceEEEEEEecCCcHHHHHHHHHHhhcCCccceEEEEECCCCCHHHHHHH
Confidence 35789999999999999999887544110111 56667676543 4566666655431000 001111111
Q ss_pred --HHHHHHHHhc---CCceeEEeccc
Q 007817 265 --VQVKLRIIVD---GKKFLLVLDDV 285 (588)
Q Consensus 265 --l~~~l~~~l~---~k~~LLVlDdv 285 (588)
....+.++++ ++.+||++||+
T Consensus 232 ~~~a~tiAEyfrd~~G~~VLl~~Dsl 257 (465)
T 3vr4_D 232 PRMALTAAEYLAYEKGMHVLVIMTDM 257 (465)
T ss_dssp HHHHHHHHHHHHHTTCCEEEEEEECH
T ss_pred HHHHHHHHHHHHHhcCCeEEEEEcCh
Confidence 1123445553 78999999998
No 271
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=93.07 E-value=0.034 Score=50.66 Aligned_cols=110 Identities=12% Similarity=0.098 Sum_probs=57.1
Q ss_pred eEEEEEEccCCCcHHHHHHHHHcccccccccccEEEEEEeCCcccHHHHHHHHHHHhcCCCC--CCCCHHHHHHHHHHHh
Q 007817 196 FCVIPIVGMAGAGKTMLAREVYNDRAVQNFKFDVKAWVSVSDDFDVLRISRALLESITSTNC--DFKTLNEVQVKLRIIV 273 (588)
Q Consensus 196 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~il~~l~~~~~--~~~~~~~l~~~l~~~l 273 (588)
-.+..++|+.|.||||.+..+.++....+ ..+.++-..-+. ..-...+...++.... ...+.. .+.+.+
T Consensus 8 g~i~v~~G~mgsGKTT~ll~~a~r~~~~g--~kV~v~k~~~d~---r~~~~~i~s~~g~~~~a~~~~~~~----~i~~~~ 78 (191)
T 1xx6_A 8 GWVEVIVGPMYSGKSEELIRRIRRAKIAK--QKIQVFKPEIDN---RYSKEDVVSHMGEKEQAVAIKNSR----EILKYF 78 (191)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHHTT--CCEEEEEEC----------CEEECTTSCEEECEEESSST----HHHHHC
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHHHCC--CEEEEEEeccCc---cchHHHHHhhcCCceeeEeeCCHH----HHHHHH
Confidence 36999999999999999988888765432 334333211111 0000112222221100 011112 233333
Q ss_pred cCCceeEEeccccccChhHHHHhhcccCCCCCCcEEEEeecchh
Q 007817 274 DGKKFLLVLDDVWNENYNLWEILKAPFMAGARNSKIIVTTCHSN 317 (588)
Q Consensus 274 ~~k~~LLVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTTR~~~ 317 (588)
.++--+|++|.+..-+....+.+....+ .|..||+|.++.+
T Consensus 79 ~~~~dvViIDEaqfl~~~~v~~l~~l~~---~~~~Vi~~Gl~~d 119 (191)
T 1xx6_A 79 EEDTEVIAIDEVQFFDDEIVEIVNKIAE---SGRRVICAGLDMD 119 (191)
T ss_dssp CTTCSEEEECSGGGSCTHHHHHHHHHHH---TTCEEEEEECSBC
T ss_pred hccCCEEEEECCCCCCHHHHHHHHHHHh---CCCEEEEEecccc
Confidence 3433499999986654445555443222 2678999987643
No 272
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=93.04 E-value=0.037 Score=51.25 Aligned_cols=23 Identities=35% Similarity=0.365 Sum_probs=20.8
Q ss_pred EEEEEEccCCCcHHHHHHHHHcc
Q 007817 197 CVIPIVGMAGAGKTMLAREVYND 219 (588)
Q Consensus 197 ~vv~I~G~gGiGKTtLA~~v~~~ 219 (588)
.+++|+|+.|+|||||++.++.-
T Consensus 23 e~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 23 TIVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp SEEEEECCTTSSTTHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 48999999999999999999865
No 273
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=93.02 E-value=0.052 Score=53.28 Aligned_cols=22 Identities=36% Similarity=0.576 Sum_probs=20.6
Q ss_pred EEEEEEccCCCcHHHHHHHHHc
Q 007817 197 CVIPIVGMAGAGKTMLAREVYN 218 (588)
Q Consensus 197 ~vv~I~G~gGiGKTtLA~~v~~ 218 (588)
.+|.|.|++|+||||+|+.+..
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5899999999999999999987
No 274
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=93.02 E-value=0.41 Score=60.24 Aligned_cols=146 Identities=13% Similarity=0.104 Sum_probs=0.0
Q ss_pred EEEEccCCCcHHHHHHHHHcccccccccccEEEEEEeCCcccHHHHHHHHHHHhcCC------------CCCCCCHHHHH
Q 007817 199 IPIVGMAGAGKTMLAREVYNDRAVQNFKFDVKAWVSVSDDFDVLRISRALLESITST------------NCDFKTLNEVQ 266 (588)
Q Consensus 199 v~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~il~~l~~~------------~~~~~~~~~l~ 266 (588)
+.++|++|+|||+||+.+........ ...++.+...+...+...+-..+... .
T Consensus 1270 vLL~GPpGtGKT~la~~~l~~~~~~~-----~~~infsa~ts~~~~~~~i~~~~~~~~~~~g~~~~P~~~---------- 1334 (2695)
T 4akg_A 1270 IILCGPPGSGKTMIMNNALRNSSLYD-----VVGINFSKDTTTEHILSALHRHTNYVTTSKGLTLLPKSD---------- 1334 (2695)
T ss_dssp EEEECSTTSSHHHHHHHHHHSCSSCE-----EEEEECCTTCCHHHHHHHHHHHBCCEEETTTEEEEEBSS----------
T ss_pred EEEECCCCCCHHHHHHHHHhcCCCCc-----eEEEEeecCCCHHHHHHHHHHHhhhccccCCccccCCCC----------
Q ss_pred HHHHHHhcCCceeEEeccccccChh------HHHHhhcccCCCC------------CCcEEEEeecchh-------hhhh
Q 007817 267 VKLRIIVDGKKFLLVLDDVWNENYN------LWEILKAPFMAGA------------RNSKIIVTTCHSN-------VASM 321 (588)
Q Consensus 267 ~~l~~~l~~k~~LLVlDdv~~~~~~------~~~~l~~~l~~~~------------~gs~ilvTTR~~~-------v~~~ 321 (588)
+++.+|.+||+.-...+ ..+.++..+..++ .+..+|.++.... -...
T Consensus 1335 --------gk~~VlFiDEinmp~~d~yg~q~~lelLRq~le~gg~yd~~~~~~~~~~~i~lIaA~Npp~~gGR~~l~~rl 1406 (2695)
T 4akg_A 1335 --------IKNLVLFCDEINLPKLDKYGSQNVVLFLRQLMEKQGFWKTPENKWVTIERIHIVGACNPPTDPGRIPMSERF 1406 (2695)
T ss_dssp --------SSCEEEEEETTTCSCCCSSSCCHHHHHHHHHHHTSSEECTTTCCEEEEESEEEEEEECCTTSTTCCCCCHHH
T ss_pred --------CceEEEEecccccccccccCchhHHHHHHHHHhcCCEEEcCCCcEEEecCEEEEEecCCCccCCCccCChhh
Q ss_pred ccccceeeCCCCCHHHHHHHHHHhhcCCCCCCCChhHHHHHHHHHHHh
Q 007817 322 MGSVEHYNLKLLSDEYCWSVFVKHAFERRDAGAHQFSKLFRKKIVAKC 369 (588)
Q Consensus 322 ~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~i~~~I~~~c 369 (588)
......+.+...+.++-..+|.....+.-. ..+....++..|++.+
T Consensus 1407 lRrf~vi~i~~P~~~~l~~I~~~il~~~l~--~~~~v~~~~~~lv~at 1452 (2695)
T 4akg_A 1407 TRHAAILYLGYPSGKSLSQIYEIYYKAIFK--LVPEFRSYTEPFARAS 1452 (2695)
T ss_dssp HTTEEEEECCCCTTTHHHHHHHHHHHHHTT--SSGGGGGGHHHHHHHH
T ss_pred hheeeEEEeCCCCHHHHHHHHHHHHHHHhc--cCHHHHHHHHHHHHHH
No 275
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=93.01 E-value=0.063 Score=51.37 Aligned_cols=28 Identities=32% Similarity=0.364 Sum_probs=23.9
Q ss_pred CCeEEEEEEccCCCcHHHHHHHHHcccc
Q 007817 194 ANFCVIPIVGMAGAGKTMLAREVYNDRA 221 (588)
Q Consensus 194 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~ 221 (588)
....++.+.|.||+|||||+..+.....
T Consensus 12 ~~~~i~~~~GkgGvGKTTl~~~La~~l~ 39 (262)
T 1yrb_A 12 MASMIVVFVGTAGSGKTTLTGEFGRYLE 39 (262)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHHHHT
T ss_pred cceEEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 3568899999999999999999986554
No 276
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=93.00 E-value=0.12 Score=48.76 Aligned_cols=36 Identities=25% Similarity=0.238 Sum_probs=27.6
Q ss_pred eEEEEEEccCCCcHHHHHHHHHcccccccccccEEEEE
Q 007817 196 FCVIPIVGMAGAGKTMLAREVYNDRAVQNFKFDVKAWV 233 (588)
Q Consensus 196 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~wv 233 (588)
...|.|.|+.|+||||+++.+.+..... .+..+...
T Consensus 27 ~~~i~~eG~~GsGKsT~~~~l~~~l~~~--~~~~~~~~ 62 (236)
T 3lv8_A 27 AKFIVIEGLEGAGKSTAIQVVVETLQQN--GIDHITRT 62 (236)
T ss_dssp CCEEEEEESTTSCHHHHHHHHHHHHHHT--TCCCEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhc--CCCeeeee
Confidence 3689999999999999999999877554 35533333
No 277
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=92.96 E-value=0.049 Score=52.54 Aligned_cols=24 Identities=33% Similarity=0.455 Sum_probs=21.6
Q ss_pred EEEEEEccCCCcHHHHHHHHHccc
Q 007817 197 CVIPIVGMAGAGKTMLAREVYNDR 220 (588)
Q Consensus 197 ~vv~I~G~gGiGKTtLA~~v~~~~ 220 (588)
.+++|+|+.|+|||||++.+..-.
T Consensus 38 e~~~liG~nGsGKSTLl~~l~Gl~ 61 (266)
T 4g1u_C 38 EMVAIIGPNGAGKSTLLRLLTGYL 61 (266)
T ss_dssp CEEEEECCTTSCHHHHHHHHTSSS
T ss_pred CEEEEECCCCCcHHHHHHHHhcCC
Confidence 589999999999999999998744
No 278
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=92.96 E-value=0.05 Score=51.62 Aligned_cols=24 Identities=25% Similarity=0.400 Sum_probs=21.5
Q ss_pred EEEEEEccCCCcHHHHHHHHHccc
Q 007817 197 CVIPIVGMAGAGKTMLAREVYNDR 220 (588)
Q Consensus 197 ~vv~I~G~gGiGKTtLA~~v~~~~ 220 (588)
.+++|+|+.|+|||||.+.++.-.
T Consensus 33 e~~~l~G~nGsGKSTLl~~l~Gl~ 56 (240)
T 1ji0_A 33 QIVTLIGANGAGKTTTLSAIAGLV 56 (240)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 489999999999999999998743
No 279
>3gqb_B V-type ATP synthase beta chain; A3B3, V-ATPase, ATP synthesis, ATP-binding, hydrogen ION TRA hydrolase, ION transport; 2.80A {Thermus thermophilus HB8} PDB: 3a5c_D* 3a5d_D 3j0j_D*
Probab=92.95 E-value=0.12 Score=53.22 Aligned_cols=88 Identities=11% Similarity=0.183 Sum_probs=51.9
Q ss_pred EEEEEEccCCCcHHHHHHHHHcccccc--------ccccc-EEEEEEeCCcc-cHHHHHHHHHHHh--c-----CCCCCC
Q 007817 197 CVIPIVGMAGAGKTMLAREVYNDRAVQ--------NFKFD-VKAWVSVSDDF-DVLRISRALLESI--T-----STNCDF 259 (588)
Q Consensus 197 ~vv~I~G~gGiGKTtLA~~v~~~~~~~--------~~~f~-~~~wv~v~~~~-~~~~~~~~il~~l--~-----~~~~~~ 259 (588)
.-++|.|.+|+|||+|+.++++..... + +-+ .++++-+++.. .+.++..++.+.= . ....+.
T Consensus 148 Qr~~Ifgg~G~GKt~L~~~Ia~~~~a~~~~~~~~~d-~~~~~~V~~~iGeR~~Ev~e~~~~l~~~g~~~rtvvv~~t~d~ 226 (464)
T 3gqb_B 148 QKLPIFSGSGLPANEIAAQIARQATVRPDLSGEGEK-EEPFAVVFAAMGITQRELSYFIQEFERTGALSRSVLFLNKADD 226 (464)
T ss_dssp CBCCEEEETTSCHHHHHHHHHHHCBCCHHHHCCCST-TCCEEEEEEEEEECHHHHHHHHHHHHHTSGGGGEEEEEEETTS
T ss_pred CEEEEecCCCCCchHHHHHHHHHHHhcccccccccC-CCceEEEEEEecCchHHHHHHHHHhhhcccccceEEEEECCCC
Confidence 467899999999999999998875431 1 112 56667776543 4556666554421 0 000111
Q ss_pred CCHHHH-----HHHHHHHh---cCCceeEEeccc
Q 007817 260 KTLNEV-----QVKLRIIV---DGKKFLLVLDDV 285 (588)
Q Consensus 260 ~~~~~l-----~~~l~~~l---~~k~~LLVlDdv 285 (588)
...... ...+.+++ +++..||++||+
T Consensus 227 p~~~r~~~~~~a~tiAEyfrd~~G~~VLl~~Ddl 260 (464)
T 3gqb_B 227 PTIERILTPRMALTVAEYLAFEHDYHVLVILTDM 260 (464)
T ss_dssp CTHHHHHHHHHHHHHHHHHHHTTCCEEEEEEETH
T ss_pred CHHHHHHHHHHHHHHHHHHHHhcCCeEEEEEcCh
Confidence 222211 22344554 378999999998
No 280
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=92.94 E-value=0.058 Score=54.35 Aligned_cols=27 Identities=33% Similarity=0.389 Sum_probs=23.6
Q ss_pred CeEEEEEEccCCCcHHHHHHHHHcccc
Q 007817 195 NFCVIPIVGMAGAGKTMLAREVYNDRA 221 (588)
Q Consensus 195 ~~~vv~I~G~gGiGKTtLA~~v~~~~~ 221 (588)
...+++|+|+.|+|||||+..++....
T Consensus 156 ~g~vi~lvG~nGsGKTTll~~Lag~l~ 182 (359)
T 2og2_A 156 KPAVIMIVGVNGGGKTTSLGKLAHRLK 182 (359)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHhhcc
Confidence 457999999999999999999987654
No 281
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=92.92 E-value=0.054 Score=51.71 Aligned_cols=23 Identities=35% Similarity=0.518 Sum_probs=21.2
Q ss_pred EEEEEEccCCCcHHHHHHHHHcc
Q 007817 197 CVIPIVGMAGAGKTMLAREVYND 219 (588)
Q Consensus 197 ~vv~I~G~gGiGKTtLA~~v~~~ 219 (588)
.+++|+|+.|+|||||.+.++.-
T Consensus 30 e~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 30 EVHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp CEEEEECSTTSSHHHHHHHHHTC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 48999999999999999999874
No 282
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=92.91 E-value=0.055 Score=49.08 Aligned_cols=25 Identities=20% Similarity=0.418 Sum_probs=22.0
Q ss_pred eEEEEEEccCCCcHHHHHHHHHccc
Q 007817 196 FCVIPIVGMAGAGKTMLAREVYNDR 220 (588)
Q Consensus 196 ~~vv~I~G~gGiGKTtLA~~v~~~~ 220 (588)
...++|+|..|+|||||.+.+....
T Consensus 29 ~~kv~lvG~~g~GKSTLl~~l~~~~ 53 (191)
T 1oix_A 29 LFKVVLIGDSGVGKSNLLSRFTRNE 53 (191)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHSC
T ss_pred ceEEEEECcCCCCHHHHHHHHhcCC
Confidence 4678999999999999999998754
No 283
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=92.90 E-value=0.051 Score=52.16 Aligned_cols=24 Identities=29% Similarity=0.324 Sum_probs=21.5
Q ss_pred EEEEEEccCCCcHHHHHHHHHccc
Q 007817 197 CVIPIVGMAGAGKTMLAREVYNDR 220 (588)
Q Consensus 197 ~vv~I~G~gGiGKTtLA~~v~~~~ 220 (588)
.+++|+|+.|+|||||.+.++.-.
T Consensus 34 e~~~liG~nGsGKSTLlk~l~Gl~ 57 (257)
T 1g6h_A 34 DVTLIIGPNGSGKSTLINVITGFL 57 (257)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 589999999999999999998644
No 284
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=92.90 E-value=0.055 Score=51.42 Aligned_cols=24 Identities=21% Similarity=0.311 Sum_probs=21.5
Q ss_pred EEEEEEccCCCcHHHHHHHHHccc
Q 007817 197 CVIPIVGMAGAGKTMLAREVYNDR 220 (588)
Q Consensus 197 ~vv~I~G~gGiGKTtLA~~v~~~~ 220 (588)
.+++|+|+.|+|||||.+.++.-.
T Consensus 29 e~~~i~G~nGsGKSTLl~~l~Gl~ 52 (243)
T 1mv5_A 29 SIIAFAGPSGGGKSTIFSLLERFY 52 (243)
T ss_dssp EEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 689999999999999999997643
No 285
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=92.86 E-value=0.052 Score=52.24 Aligned_cols=24 Identities=25% Similarity=0.389 Sum_probs=21.5
Q ss_pred EEEEEEccCCCcHHHHHHHHHccc
Q 007817 197 CVIPIVGMAGAGKTMLAREVYNDR 220 (588)
Q Consensus 197 ~vv~I~G~gGiGKTtLA~~v~~~~ 220 (588)
.+++|+|+.|+|||||.+.++.-.
T Consensus 51 ei~~liG~NGsGKSTLlk~l~Gl~ 74 (263)
T 2olj_A 51 EVVVVIGPSGSGKSTFLRCLNLLE 74 (263)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEEcCCCCcHHHHHHHHHcCC
Confidence 589999999999999999998643
No 286
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=92.83 E-value=0.051 Score=48.89 Aligned_cols=22 Identities=36% Similarity=0.590 Sum_probs=19.8
Q ss_pred EEEEEccCCCcHHHHHHHHHcc
Q 007817 198 VIPIVGMAGAGKTMLAREVYND 219 (588)
Q Consensus 198 vv~I~G~gGiGKTtLA~~v~~~ 219 (588)
-|+|+|.+|+|||||.+.+...
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~ 25 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKT 25 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999999874
No 287
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=92.82 E-value=0.045 Score=50.91 Aligned_cols=24 Identities=29% Similarity=0.366 Sum_probs=21.3
Q ss_pred EEEEEEccCCCcHHHHHHHHHccc
Q 007817 197 CVIPIVGMAGAGKTMLAREVYNDR 220 (588)
Q Consensus 197 ~vv~I~G~gGiGKTtLA~~v~~~~ 220 (588)
.+++|+|+.|+|||||.+.++.-.
T Consensus 36 e~~~iiG~NGsGKSTLlk~l~Gl~ 59 (214)
T 1sgw_A 36 NVVNFHGPNGIGKTTLLKTISTYL 59 (214)
T ss_dssp CCEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 489999999999999999997653
No 288
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=92.82 E-value=0.15 Score=47.61 Aligned_cols=28 Identities=21% Similarity=0.242 Sum_probs=24.7
Q ss_pred CeEEEEEEccCCCcHHHHHHHHHccccc
Q 007817 195 NFCVIPIVGMAGAGKTMLAREVYNDRAV 222 (588)
Q Consensus 195 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~ 222 (588)
....|.|.|+.|+||||+++.+.+....
T Consensus 20 ~~~~i~~~G~~g~GKst~~~~l~~~l~~ 47 (223)
T 3ld9_A 20 GSMFITFEGIDGSGKTTQSHLLAEYLSE 47 (223)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 4578999999999999999999987654
No 289
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=92.82 E-value=0.099 Score=54.07 Aligned_cols=53 Identities=19% Similarity=0.243 Sum_probs=36.2
Q ss_pred CceeechhhHHHHHHHHhcC--------CCCCCCCeEEEEEEccCCCcHHHHHHHHHcccc
Q 007817 169 RAVYGRDEDKARMLEMVLSD--------DPTTDANFCVIPIVGMAGAGKTMLAREVYNDRA 221 (588)
Q Consensus 169 ~~~vGR~~e~~~l~~~L~~~--------~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~ 221 (588)
..++|-+..++.+...+... ........+-+.++|++|+||||+|+.++....
T Consensus 15 ~~IvGqe~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~iLl~GppGtGKT~lar~lA~~l~ 75 (444)
T 1g41_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLAN 75 (444)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHHHHSCTTTTTTCCCCCEEEECCTTSSHHHHHHHHHHHTT
T ss_pred HHhCCHHHHHHHHHHHHHHHHhhhccccccccccCCceEEEEcCCCCCHHHHHHHHHHHcC
Confidence 35788888777776665321 000011335688999999999999999998653
No 290
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=92.81 E-value=0.06 Score=50.62 Aligned_cols=25 Identities=24% Similarity=0.227 Sum_probs=22.2
Q ss_pred CeEEEEEEccCCCcHHHHHHHHHcc
Q 007817 195 NFCVIPIVGMAGAGKTMLAREVYND 219 (588)
Q Consensus 195 ~~~vv~I~G~gGiGKTtLA~~v~~~ 219 (588)
...+|+|.|+.|+|||||++.+...
T Consensus 19 ~g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 19 QPFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp CCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred CceEEEEECCCCCCHHHHHHHHHhc
Confidence 4579999999999999999998774
No 291
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=92.80 E-value=0.054 Score=51.62 Aligned_cols=24 Identities=38% Similarity=0.480 Sum_probs=21.5
Q ss_pred EEEEEEccCCCcHHHHHHHHHccc
Q 007817 197 CVIPIVGMAGAGKTMLAREVYNDR 220 (588)
Q Consensus 197 ~vv~I~G~gGiGKTtLA~~v~~~~ 220 (588)
.+++|+|+.|+|||||.+.++.-.
T Consensus 36 e~~~i~G~nGsGKSTLl~~l~Gl~ 59 (247)
T 2ff7_A 36 EVIGIVGRSGSGKSTLTKLIQRFY 59 (247)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 489999999999999999997754
No 292
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=92.76 E-value=0.058 Score=52.05 Aligned_cols=23 Identities=30% Similarity=0.443 Sum_probs=21.2
Q ss_pred EEEEEEccCCCcHHHHHHHHHcc
Q 007817 197 CVIPIVGMAGAGKTMLAREVYND 219 (588)
Q Consensus 197 ~vv~I~G~gGiGKTtLA~~v~~~ 219 (588)
.+++|+|+.|+|||||.+.++.-
T Consensus 47 e~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 47 EVHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 58999999999999999999874
No 293
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=92.71 E-value=0.069 Score=46.39 Aligned_cols=24 Identities=29% Similarity=0.439 Sum_probs=20.9
Q ss_pred EEEEEEccCCCcHHHHHHHHHccc
Q 007817 197 CVIPIVGMAGAGKTMLAREVYNDR 220 (588)
Q Consensus 197 ~vv~I~G~gGiGKTtLA~~v~~~~ 220 (588)
+-|+|+|.+|+|||||+..+....
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~ 25 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKKR 25 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHCC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 468899999999999999998753
No 294
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=92.70 E-value=0.056 Score=51.77 Aligned_cols=24 Identities=29% Similarity=0.346 Sum_probs=21.5
Q ss_pred EEEEEEccCCCcHHHHHHHHHccc
Q 007817 197 CVIPIVGMAGAGKTMLAREVYNDR 220 (588)
Q Consensus 197 ~vv~I~G~gGiGKTtLA~~v~~~~ 220 (588)
.+++|+|+.|+|||||.+.++.-.
T Consensus 42 ei~~l~G~NGsGKSTLlk~l~Gl~ 65 (256)
T 1vpl_A 42 EIFGLIGPNGAGKTTTLRIISTLI 65 (256)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSS
T ss_pred cEEEEECCCCCCHHHHHHHHhcCC
Confidence 589999999999999999997643
No 295
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=92.70 E-value=0.3 Score=52.73 Aligned_cols=24 Identities=25% Similarity=0.398 Sum_probs=21.4
Q ss_pred EEEEEEccCCCcHHHHHHHHHccc
Q 007817 197 CVIPIVGMAGAGKTMLAREVYNDR 220 (588)
Q Consensus 197 ~vv~I~G~gGiGKTtLA~~v~~~~ 220 (588)
.+++|+|+.|+|||||++.+..-.
T Consensus 370 ~~~~ivG~sGsGKSTLl~~l~g~~ 393 (582)
T 3b60_A 370 KTVALVGRSGSGKSTIASLITRFY 393 (582)
T ss_dssp CEEEEEECTTSSHHHHHHHHTTTT
T ss_pred CEEEEECCCCCCHHHHHHHHhhcc
Confidence 589999999999999999997654
No 296
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=92.70 E-value=0.085 Score=49.77 Aligned_cols=39 Identities=18% Similarity=0.319 Sum_probs=28.8
Q ss_pred EEEEEEccCCCcHHHHHHHHHcccccccccccEEEEEEeCCc
Q 007817 197 CVIPIVGMAGAGKTMLAREVYNDRAVQNFKFDVKAWVSVSDD 238 (588)
Q Consensus 197 ~vv~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~wv~v~~~ 238 (588)
.++.|.|++|+||||||.+++...... -..++|++....
T Consensus 24 ~~~~i~G~~GsGKTtl~~~~~~~~~~~---~~~v~~~~~e~~ 62 (247)
T 2dr3_A 24 NVVLLSGGPGTGKTIFSQQFLWNGLKM---GEPGIYVALEEH 62 (247)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHHHT---TCCEEEEESSSC
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHhc---CCeEEEEEccCC
Confidence 589999999999999998887654322 235677776543
No 297
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=92.63 E-value=0.098 Score=46.90 Aligned_cols=25 Identities=16% Similarity=0.341 Sum_probs=22.0
Q ss_pred CeEEEEEEccCCCcHHHHHHHHHcc
Q 007817 195 NFCVIPIVGMAGAGKTMLAREVYND 219 (588)
Q Consensus 195 ~~~vv~I~G~gGiGKTtLA~~v~~~ 219 (588)
....|+|+|.+|+|||||...+...
T Consensus 6 ~~~~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 6 KSYEIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3467899999999999999999874
No 298
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=92.63 E-value=0.063 Score=48.91 Aligned_cols=24 Identities=29% Similarity=0.325 Sum_probs=21.3
Q ss_pred EEEEEEccCCCcHHHHHHHHHccc
Q 007817 197 CVIPIVGMAGAGKTMLAREVYNDR 220 (588)
Q Consensus 197 ~vv~I~G~gGiGKTtLA~~v~~~~ 220 (588)
..|.|.|++|+||||||..+....
T Consensus 35 ~~ilI~GpsGsGKStLA~~La~~g 58 (205)
T 2qmh_A 35 LGVLITGDSGVGKSETALELVQRG 58 (205)
T ss_dssp EEEEEECCCTTTTHHHHHHHHTTT
T ss_pred EEEEEECCCCCCHHHHHHHHHHhC
Confidence 578999999999999999998753
No 299
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=92.61 E-value=0.058 Score=52.15 Aligned_cols=24 Identities=33% Similarity=0.386 Sum_probs=21.5
Q ss_pred EEEEEEccCCCcHHHHHHHHHccc
Q 007817 197 CVIPIVGMAGAGKTMLAREVYNDR 220 (588)
Q Consensus 197 ~vv~I~G~gGiGKTtLA~~v~~~~ 220 (588)
.+++|+|+.|+|||||.+.++.-.
T Consensus 46 e~~~i~G~nGsGKSTLlk~l~Gl~ 69 (271)
T 2ixe_A 46 KVTALVGPNGSGKSTVAALLQNLY 69 (271)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 589999999999999999997654
No 300
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=92.60 E-value=0.059 Score=51.78 Aligned_cols=24 Identities=29% Similarity=0.527 Sum_probs=21.4
Q ss_pred EEEEEEccCCCcHHHHHHHHHccc
Q 007817 197 CVIPIVGMAGAGKTMLAREVYNDR 220 (588)
Q Consensus 197 ~vv~I~G~gGiGKTtLA~~v~~~~ 220 (588)
.+++|+|+.|+|||||.+.+..-.
T Consensus 47 e~~~i~G~nGsGKSTLl~~l~Gl~ 70 (260)
T 2ghi_A 47 TTCALVGHTGSGKSTIAKLLYRFY 70 (260)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhccC
Confidence 589999999999999999997643
No 301
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=92.58 E-value=0.03 Score=54.80 Aligned_cols=26 Identities=19% Similarity=0.309 Sum_probs=19.5
Q ss_pred CeEEEEEEccCCCcHHHHHHHHHccc
Q 007817 195 NFCVIPIVGMAGAGKTMLAREVYNDR 220 (588)
Q Consensus 195 ~~~vv~I~G~gGiGKTtLA~~v~~~~ 220 (588)
+..+|+|.|+.|+||||+|+.+.+..
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~~l 29 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQIF 29 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHH
Confidence 34689999999999999999998743
No 302
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=92.58 E-value=0.06 Score=49.10 Aligned_cols=25 Identities=20% Similarity=0.418 Sum_probs=21.7
Q ss_pred eEEEEEEccCCCcHHHHHHHHHccc
Q 007817 196 FCVIPIVGMAGAGKTMLAREVYNDR 220 (588)
Q Consensus 196 ~~vv~I~G~gGiGKTtLA~~v~~~~ 220 (588)
...++|+|..|+|||||.+.+....
T Consensus 5 ~~kv~lvG~~g~GKSTLl~~l~~~~ 29 (199)
T 2f9l_A 5 LFKVVLIGDSGVGKSNLLSRFTRNE 29 (199)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHSC
T ss_pred eEEEEEECcCCCCHHHHHHHHhcCC
Confidence 4578999999999999999998753
No 303
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=92.55 E-value=0.072 Score=51.18 Aligned_cols=109 Identities=9% Similarity=0.107 Sum_probs=56.4
Q ss_pred eEEEEEEccCCCcHHHHHHHHHcccccccccccEEEEEEeCC-cccHHHHHHHHHH--HhcCCCCCCCCHHHHHHHHHHH
Q 007817 196 FCVIPIVGMAGAGKTMLAREVYNDRAVQNFKFDVKAWVSVSD-DFDVLRISRALLE--SITSTNCDFKTLNEVQVKLRII 272 (588)
Q Consensus 196 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~wv~v~~-~~~~~~~~~~il~--~l~~~~~~~~~~~~l~~~l~~~ 272 (588)
-.+++|+|+.|+|||||.+.+..-... .+...+++.-.. .+-.... ..+.. .++. +. ..+...+...
T Consensus 25 g~~v~i~Gp~GsGKSTll~~l~g~~~~---~~~G~I~~~g~~i~~~~~~~-~~~v~q~~~gl---~~---~~l~~~la~a 94 (261)
T 2eyu_A 25 MGLILVTGPTGSGKSTTIASMIDYINQ---TKSYHIITIEDPIEYVFKHK-KSIVNQREVGE---DT---KSFADALRAA 94 (261)
T ss_dssp SEEEEEECSTTCSHHHHHHHHHHHHHH---HCCCEEEEEESSCCSCCCCS-SSEEEEEEBTT---TB---SCHHHHHHHH
T ss_pred CCEEEEECCCCccHHHHHHHHHHhCCC---CCCCEEEEcCCcceeecCCc-ceeeeHHHhCC---CH---HHHHHHHHHH
Confidence 369999999999999999998775432 112233221110 0000000 00000 0000 11 1234556666
Q ss_pred hcCCceeEEeccccccChhHHHHhhcccCCCCCCcEEEEeecchhhh
Q 007817 273 VDGKKFLLVLDDVWNENYNLWEILKAPFMAGARNSKIIVTTCHSNVA 319 (588)
Q Consensus 273 l~~k~~LLVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTTR~~~v~ 319 (588)
+..++=+|++|... +......+.... ..|.-|++||...+..
T Consensus 95 L~~~p~illlDEp~--D~~~~~~~l~~~---~~g~~vl~t~H~~~~~ 136 (261)
T 2eyu_A 95 LREDPDVIFVGEMR--DLETVETALRAA---ETGHLVFGTLHTNTAI 136 (261)
T ss_dssp HHHCCSEEEESCCC--SHHHHHHHHHHH---HTTCEEEEEECCSSHH
T ss_pred HhhCCCEEEeCCCC--CHHHHHHHHHHH---ccCCEEEEEeCcchHH
Confidence 66678899999985 333333332222 2366788888765543
No 304
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=92.54 E-value=0.061 Score=51.29 Aligned_cols=24 Identities=29% Similarity=0.429 Sum_probs=21.4
Q ss_pred EEEEEEccCCCcHHHHHHHHHccc
Q 007817 197 CVIPIVGMAGAGKTMLAREVYNDR 220 (588)
Q Consensus 197 ~vv~I~G~gGiGKTtLA~~v~~~~ 220 (588)
.+++|+|+.|+|||||.+.++.-.
T Consensus 27 e~~~liG~NGsGKSTLlk~l~Gl~ 50 (249)
T 2qi9_C 27 EILHLVGPNGAGKSTLLARMAGMT 50 (249)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCcHHHHHHHHhCCC
Confidence 489999999999999999998743
No 305
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=92.48 E-value=0.075 Score=52.72 Aligned_cols=28 Identities=29% Similarity=0.377 Sum_probs=23.9
Q ss_pred CeEEEEEEccCCCcHHHHHHHHHccccc
Q 007817 195 NFCVIPIVGMAGAGKTMLAREVYNDRAV 222 (588)
Q Consensus 195 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~ 222 (588)
...+++|+|++|+||||++..++.....
T Consensus 104 ~~~vI~ivG~~G~GKTT~~~~LA~~l~~ 131 (320)
T 1zu4_A 104 RLNIFMLVGVNGTGKTTSLAKMANYYAE 131 (320)
T ss_dssp SCEEEEEESSTTSSHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 4579999999999999999999876543
No 306
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=92.46 E-value=0.066 Score=52.59 Aligned_cols=25 Identities=20% Similarity=0.319 Sum_probs=21.9
Q ss_pred eEEEEEEccCCCcHHHHHHHHHccc
Q 007817 196 FCVIPIVGMAGAGKTMLAREVYNDR 220 (588)
Q Consensus 196 ~~vv~I~G~gGiGKTtLA~~v~~~~ 220 (588)
-.+++|+|+.|+|||||++.+..-.
T Consensus 126 Ge~vaIvGpsGsGKSTLl~lL~gl~ 150 (305)
T 2v9p_A 126 KNCLAFIGPPNTGKSMLCNSLIHFL 150 (305)
T ss_dssp CSEEEEECSSSSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCcHHHHHHHHhhhc
Confidence 3689999999999999999998744
No 307
>2c61_A A-type ATP synthase non-catalytic subunit B; hydrolase, H+ ATPase, A1AO, ATP synthesis, hydrogen ION transport, ION transport; 1.5A {Methanosarcina mazei GO1} PDB: 3dsr_A* 3b2q_A* 2rkw_A* 3eiu_A*
Probab=92.46 E-value=0.13 Score=53.27 Aligned_cols=89 Identities=11% Similarity=0.149 Sum_probs=53.0
Q ss_pred EEEEEEccCCCcHHHHHHHHHcccccccc-cccEEEEEEeCCcc-cHHHHHHHHHHHhcCCC-------CCCCCHH----
Q 007817 197 CVIPIVGMAGAGKTMLAREVYNDRAVQNF-KFDVKAWVSVSDDF-DVLRISRALLESITSTN-------CDFKTLN---- 263 (588)
Q Consensus 197 ~vv~I~G~gGiGKTtLA~~v~~~~~~~~~-~f~~~~wv~v~~~~-~~~~~~~~il~~l~~~~-------~~~~~~~---- 263 (588)
.-++|.|.+|+|||+|+.+++++...... .=+.++++-+++.. ...++..++...=.... .+.....
T Consensus 153 Qr~~Ifgg~G~GKt~Ll~~Ia~~~~~n~~~~~~~~V~~~iGER~~Ev~e~~~~~~~~g~m~rtvvV~~tsd~p~~~r~~~ 232 (469)
T 2c61_A 153 QKLPIFSASGLPHNEIALQIARQASVPGSESAFAVVFAAMGITNEEAQYFMSDFEKTGALERAVVFLNLADDPAVERIVT 232 (469)
T ss_dssp CBCCEEECTTSCHHHHHHHHHHHCBCTTCSSCEEEEEEEEEECHHHHHHHHHHHHHHSGGGGEEEEEEETTSCHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHhhccCCCCcEEEEEEccCCcHHHHHHHHHHHhccCccceEEEEECCCCCHHHHHHH
Confidence 46778899999999999999987654210 11356677776554 45666666665311110 0111111
Q ss_pred -HHHHHHHHHh---cCCceeEEeccc
Q 007817 264 -EVQVKLRIIV---DGKKFLLVLDDV 285 (588)
Q Consensus 264 -~l~~~l~~~l---~~k~~LLVlDdv 285 (588)
.....+.+++ +++..||++||+
T Consensus 233 ~~~a~tiAEyfrdd~G~dVLl~~Dsl 258 (469)
T 2c61_A 233 PRMALTAAEYLAYEHGMHVLVILTDI 258 (469)
T ss_dssp HHHHHHHHHHHHHHHCCEEEEEEECH
T ss_pred HHHHHHHHHHHHHhcCCeEEEEEeCH
Confidence 1122344444 479999999997
No 308
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=92.44 E-value=0.063 Score=51.76 Aligned_cols=24 Identities=25% Similarity=0.292 Sum_probs=21.3
Q ss_pred EEEEEEccCCCcHHHHHHHHHccc
Q 007817 197 CVIPIVGMAGAGKTMLAREVYNDR 220 (588)
Q Consensus 197 ~vv~I~G~gGiGKTtLA~~v~~~~ 220 (588)
.+++|+|+.|+|||||.+.++.-.
T Consensus 34 e~~~liG~nGsGKSTLl~~i~Gl~ 57 (266)
T 2yz2_A 34 ECLLVAGNTGSGKSTLLQIVAGLI 57 (266)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCcHHHHHHHHhCCC
Confidence 589999999999999999997643
No 309
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=92.43 E-value=0.17 Score=46.86 Aligned_cols=52 Identities=23% Similarity=0.197 Sum_probs=33.2
Q ss_pred EEEEEEccCCCcHHHHHHHHHcccccccccccEEEEEEeCCcccHHHHHHHHHH
Q 007817 197 CVIPIVGMAGAGKTMLAREVYNDRAVQNFKFDVKAWVSVSDDFDVLRISRALLE 250 (588)
Q Consensus 197 ~vv~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~il~ 250 (588)
..|.|.|+.|+||||+++.+.+.....+ +..+.+..-.....+.+.+++++.
T Consensus 4 ~~i~~eG~~gsGKsT~~~~l~~~l~~~~--~~~v~~~rep~~t~~g~~ir~~l~ 55 (213)
T 4tmk_A 4 KYIVIEGLEGAGKTTARNVVVETLEQLG--IRDMVFTREPGGTQLAEKLRSLLL 55 (213)
T ss_dssp CEEEEEECTTSCHHHHHHHHHHHHHHTT--CCCEEEEESSCSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcC--CCcceeeeCCCCCHHHHHHHHHHh
Confidence 5789999999999999999998776543 422333322222233444455543
No 310
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=92.42 E-value=0.063 Score=51.33 Aligned_cols=24 Identities=21% Similarity=0.414 Sum_probs=21.5
Q ss_pred EEEEEEccCCCcHHHHHHHHHccc
Q 007817 197 CVIPIVGMAGAGKTMLAREVYNDR 220 (588)
Q Consensus 197 ~vv~I~G~gGiGKTtLA~~v~~~~ 220 (588)
.+++|+|+.|+|||||.+.++.-.
T Consensus 32 e~~~l~G~nGsGKSTLl~~l~Gl~ 55 (253)
T 2nq2_C 32 DILAVLGQNGCGKSTLLDLLLGIH 55 (253)
T ss_dssp CEEEEECCSSSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 489999999999999999998754
No 311
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=92.41 E-value=0.064 Score=52.10 Aligned_cols=24 Identities=29% Similarity=0.284 Sum_probs=21.6
Q ss_pred EEEEEEccCCCcHHHHHHHHHccc
Q 007817 197 CVIPIVGMAGAGKTMLAREVYNDR 220 (588)
Q Consensus 197 ~vv~I~G~gGiGKTtLA~~v~~~~ 220 (588)
.+++|+|+.|+|||||.+.++.-.
T Consensus 48 e~~~liG~NGsGKSTLlk~l~Gl~ 71 (279)
T 2ihy_A 48 DKWILYGLNGAGKTTLLNILNAYE 71 (279)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCcHHHHHHHHhCCC
Confidence 489999999999999999998754
No 312
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=92.40 E-value=0.51 Score=50.94 Aligned_cols=24 Identities=21% Similarity=0.397 Sum_probs=21.3
Q ss_pred EEEEEEccCCCcHHHHHHHHHccc
Q 007817 197 CVIPIVGMAGAGKTMLAREVYNDR 220 (588)
Q Consensus 197 ~vv~I~G~gGiGKTtLA~~v~~~~ 220 (588)
.+++|+|+.|+|||||++.+..-.
T Consensus 370 e~~~ivG~sGsGKSTll~~l~g~~ 393 (587)
T 3qf4_A 370 SLVAVLGETGSGKSTLMNLIPRLI 393 (587)
T ss_dssp CEEEEECSSSSSHHHHHHTTTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCc
Confidence 589999999999999999887644
No 313
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=92.33 E-value=0.085 Score=49.58 Aligned_cols=28 Identities=32% Similarity=0.425 Sum_probs=24.1
Q ss_pred CeEEEEEEccCCCcHHHHHHHHHccccc
Q 007817 195 NFCVIPIVGMAGAGKTMLAREVYNDRAV 222 (588)
Q Consensus 195 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~ 222 (588)
....|+|.|++|+||||+++.+.+....
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~~l~~~l~~ 52 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVINEVYHRLVK 52 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHHTT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHhc
Confidence 3478999999999999999999986653
No 314
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=92.30 E-value=0.07 Score=46.39 Aligned_cols=23 Identities=26% Similarity=0.551 Sum_probs=20.2
Q ss_pred EEEEEccCCCcHHHHHHHHHccc
Q 007817 198 VIPIVGMAGAGKTMLAREVYNDR 220 (588)
Q Consensus 198 vv~I~G~gGiGKTtLA~~v~~~~ 220 (588)
-|+|+|.+|+|||||+..+....
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~~ 27 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQNH 27 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 57899999999999999997653
No 315
>2r9v_A ATP synthase subunit alpha; TM1612, structural genomics, JOI for structural genomics, JCSG, protein structure initiative ATP synthesis; HET: ATP PG4; 2.10A {Thermotoga maritima MSB8}
Probab=92.30 E-value=0.25 Score=51.49 Aligned_cols=84 Identities=20% Similarity=0.226 Sum_probs=49.8
Q ss_pred EEEEEEccCCCcHHHHH-HHHHcccccccccccE-EEEEEeCCcc-cHHHHHHHHHHHhcCC-------CCCCCCHHH--
Q 007817 197 CVIPIVGMAGAGKTMLA-REVYNDRAVQNFKFDV-KAWVSVSDDF-DVLRISRALLESITST-------NCDFKTLNE-- 264 (588)
Q Consensus 197 ~vv~I~G~gGiGKTtLA-~~v~~~~~~~~~~f~~-~~wv~v~~~~-~~~~~~~~il~~l~~~-------~~~~~~~~~-- 264 (588)
.-++|+|.+|+|||+|| ..+.+.. ..+. ++++-+++.. .+.++.+.+.+.=... ..+......
T Consensus 176 QR~~I~g~~g~GKT~Lal~~I~~~~-----~~dv~~V~~~IGeR~~Ev~e~~~~~~~~g~m~rtvvV~atad~p~~~r~~ 250 (515)
T 2r9v_A 176 QRELIIGDRQTGKTAIAIDTIINQK-----GQGVYCIYVAIGQKKSAIARIIDKLRQYGAMEYTTVVVASASDPASLQYI 250 (515)
T ss_dssp CBEEEEEETTSSHHHHHHHHHHTTT-----TTTEEEEEEEESCCHHHHHHHHHHHHHTTGGGGEEEEEECTTSCHHHHHH
T ss_pred CEEEEEcCCCCCccHHHHHHHHHhh-----cCCcEEEEEEcCCCcHHHHHHHHHHHhCCCcceeEEEEECCCCCHHHHHH
Confidence 46889999999999996 5777643 2343 4667777654 4556666665421110 001111111
Q ss_pred ---HHHHHHHHh--cCCceeEEeccc
Q 007817 265 ---VQVKLRIIV--DGKKFLLVLDDV 285 (588)
Q Consensus 265 ---l~~~l~~~l--~~k~~LLVlDdv 285 (588)
....+.+++ +++..||++||+
T Consensus 251 a~~~a~tiAEyfrd~G~dVLli~Dsl 276 (515)
T 2r9v_A 251 APYAGCAMGEYFAYSGRDALVVYDDL 276 (515)
T ss_dssp HHHHHHHHHHHHHTTTCEEEEEEETH
T ss_pred HHHHHHHHHHHHHHcCCcEEEEeccH
Confidence 111334444 578999999998
No 316
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=92.26 E-value=0.095 Score=45.82 Aligned_cols=25 Identities=16% Similarity=0.246 Sum_probs=21.3
Q ss_pred eEEEEEEccCCCcHHHHHHHHHccc
Q 007817 196 FCVIPIVGMAGAGKTMLAREVYNDR 220 (588)
Q Consensus 196 ~~vv~I~G~gGiGKTtLA~~v~~~~ 220 (588)
.--|+|+|.+|+|||||...+.+..
T Consensus 5 ~~~i~v~G~~~~GKssl~~~l~~~~ 29 (168)
T 1z2a_A 5 AIKMVVVGNGAVGKSSMIQRYCKGI 29 (168)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHCC
T ss_pred eEEEEEECcCCCCHHHHHHHHHcCC
Confidence 4567899999999999999998753
No 317
>2qe7_A ATP synthase subunit alpha; blockage of ATP hydrolysis, F1-ATPase, single analysis, thermoalkaliphilic, hydrolase; 3.06A {Bacillus SP} PDB: 1sky_B
Probab=92.25 E-value=0.35 Score=50.33 Aligned_cols=96 Identities=18% Similarity=0.196 Sum_probs=55.0
Q ss_pred HHHHHHhcCCCCCCCCeEEEEEEccCCCcHHHHH-HHHHccccccccccc-EEEEEEeCCcc-cHHHHHHHHHHHhcCCC
Q 007817 180 RMLEMVLSDDPTTDANFCVIPIVGMAGAGKTMLA-REVYNDRAVQNFKFD-VKAWVSVSDDF-DVLRISRALLESITSTN 256 (588)
Q Consensus 180 ~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLA-~~v~~~~~~~~~~f~-~~~wv~v~~~~-~~~~~~~~il~~l~~~~ 256 (588)
+.++.|..-. .-.-++|+|.+|+|||+|| ..+.+.. ..+ .++++-+++.. .+.++.+.+.+.-....
T Consensus 151 raID~l~Pig-----rGQR~~Ifg~~g~GKT~Lal~~I~~~~-----~~dv~~V~~~iGeR~~Ev~~~~~~~~~~g~m~~ 220 (502)
T 2qe7_A 151 KAIDSMIPIG-----RGQRELIIGDRQTGKTTIAIDTIINQK-----GQDVICIYVAIGQKQSTVAGVVETLRQHDALDY 220 (502)
T ss_dssp HHHHHSSCCB-----TTCBCEEEECSSSCHHHHHHHHHHGGG-----SCSEEEEEEEESCCHHHHHHHHHHHHHTTCSTT
T ss_pred eecccccccc-----cCCEEEEECCCCCCchHHHHHHHHHhh-----cCCcEEEEEECCCcchHHHHHHHHHhhCCCcce
Confidence 3455554332 2356789999999999996 5777643 234 34667777654 45566666654311111
Q ss_pred C-----CCCC--HHHH-----HHHHHHHh--cCCceeEEeccc
Q 007817 257 C-----DFKT--LNEV-----QVKLRIIV--DGKKFLLVLDDV 285 (588)
Q Consensus 257 ~-----~~~~--~~~l-----~~~l~~~l--~~k~~LLVlDdv 285 (588)
. ..++ .... ...+.+++ +++..||++||+
T Consensus 221 tvvV~atad~p~~~r~~a~~~a~tiAEyfrd~G~dVLl~~Dsl 263 (502)
T 2qe7_A 221 TIVVTASASEPAPLLYLAPYAGCAMGEYFMYKGKHALVVYDDL 263 (502)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHHHHHHHHTTTCEEEEEEECH
T ss_pred eEEEEECCCCCHHHHHHHHHHHHHHHHHHHHcCCcEEEEEecH
Confidence 0 1111 1111 12334444 578999999998
No 318
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=92.23 E-value=0.073 Score=51.65 Aligned_cols=24 Identities=38% Similarity=0.441 Sum_probs=21.3
Q ss_pred EEEEEEccCCCcHHHHHHHHHccc
Q 007817 197 CVIPIVGMAGAGKTMLAREVYNDR 220 (588)
Q Consensus 197 ~vv~I~G~gGiGKTtLA~~v~~~~ 220 (588)
.++.|+|++|+|||||+..++...
T Consensus 31 ~i~~i~G~~GsGKTtl~~~l~~~~ 54 (279)
T 1nlf_A 31 TVGALVSPGGAGKSMLALQLAAQI 54 (279)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHH
Confidence 589999999999999999988643
No 319
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=92.15 E-value=0.23 Score=45.94 Aligned_cols=28 Identities=18% Similarity=0.142 Sum_probs=24.3
Q ss_pred eEEEEEEccCCCcHHHHHHHHHcccccc
Q 007817 196 FCVIPIVGMAGAGKTMLAREVYNDRAVQ 223 (588)
Q Consensus 196 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 223 (588)
...|.|.|+.|+||||+++.+.+.....
T Consensus 6 g~~i~~eG~~gsGKsT~~~~l~~~l~~~ 33 (213)
T 4edh_A 6 GLFVTLEGPEGAGKSTNRDYLAERLRER 33 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHTT
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHHHHc
Confidence 3689999999999999999998876544
No 320
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=92.11 E-value=0.087 Score=49.83 Aligned_cols=25 Identities=16% Similarity=0.177 Sum_probs=22.3
Q ss_pred eEEEEEEccCCCcHHHHHHHHHccc
Q 007817 196 FCVIPIVGMAGAGKTMLAREVYNDR 220 (588)
Q Consensus 196 ~~vv~I~G~gGiGKTtLA~~v~~~~ 220 (588)
...|+|.|..|+||||+++.+.+..
T Consensus 2 ~~~i~~~G~~g~GKtt~~~~l~~~l 26 (241)
T 2ocp_A 2 PRRLSIEGNIAVGKSTFVKLLTKTY 26 (241)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHC
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHc
Confidence 3689999999999999999998854
No 321
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=92.10 E-value=0.083 Score=54.71 Aligned_cols=28 Identities=32% Similarity=0.364 Sum_probs=24.0
Q ss_pred CeEEEEEEccCCCcHHHHHHHHHccccc
Q 007817 195 NFCVIPIVGMAGAGKTMLAREVYNDRAV 222 (588)
Q Consensus 195 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~ 222 (588)
.+.+|+|+|.+|+||||++..+......
T Consensus 98 ~~~vI~ivG~~GvGKTTla~~La~~l~~ 125 (432)
T 2v3c_C 98 KQNVILLVGIQGSGKTTTAAKLARYIQK 125 (432)
T ss_dssp SCCCEEEECCSSSSTTHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 4579999999999999999999876653
No 322
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=92.09 E-value=0.081 Score=49.87 Aligned_cols=26 Identities=31% Similarity=0.355 Sum_probs=22.6
Q ss_pred CeEEEEEEccCCCcHHHHHHHHHccc
Q 007817 195 NFCVIPIVGMAGAGKTMLAREVYNDR 220 (588)
Q Consensus 195 ~~~vv~I~G~gGiGKTtLA~~v~~~~ 220 (588)
...+|+|.|+.|+||||+++.+....
T Consensus 15 ~~~~i~i~G~~gsGKst~~~~l~~~l 40 (236)
T 1q3t_A 15 KTIQIAIDGPASSGKSTVAKIIAKDF 40 (236)
T ss_dssp CCCEEEEECSSCSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 45689999999999999999998743
No 323
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=92.05 E-value=0.079 Score=51.20 Aligned_cols=23 Identities=30% Similarity=0.619 Sum_probs=20.6
Q ss_pred EEEEEccCCCcHHHHHHHHHccc
Q 007817 198 VIPIVGMAGAGKTMLAREVYNDR 220 (588)
Q Consensus 198 vv~I~G~gGiGKTtLA~~v~~~~ 220 (588)
.++|+|+.|+|||||.+.++...
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~ 26 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQ 26 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58899999999999999998754
No 324
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=92.02 E-value=1.1 Score=50.04 Aligned_cols=34 Identities=21% Similarity=0.379 Sum_probs=23.8
Q ss_pred hHHHHHHHHhcCCCCCCCCeEEEEEEccCCCcHHHHHHHHHc
Q 007817 177 DKARMLEMVLSDDPTTDANFCVIPIVGMAGAGKTMLAREVYN 218 (588)
Q Consensus 177 e~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~ 218 (588)
..+.+...+... .++.|+|+.|.||||++-.+..
T Consensus 98 q~~~i~~~l~~~--------~~vii~gpTGSGKTtllp~ll~ 131 (773)
T 2xau_A 98 QRDEFLKLYQNN--------QIMVFVGETGSGKTTQIPQFVL 131 (773)
T ss_dssp GHHHHHHHHHHC--------SEEEEECCTTSSHHHHHHHHHH
T ss_pred HHHHHHHHHhCC--------CeEEEECCCCCCHHHHHHHHHH
Confidence 345555555433 4789999999999996655543
No 325
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A
Probab=92.00 E-value=0.13 Score=52.11 Aligned_cols=131 Identities=15% Similarity=0.113 Sum_probs=65.4
Q ss_pred ceeechhhHHHHHHHHhcCCCCCCCCeEEEEEEccCCCcHHHHHHHHHcccccccccccEEEEEEeCCcccHHHHHHHHH
Q 007817 170 AVYGRDEDKARMLEMVLSDDPTTDANFCVIPIVGMAGAGKTMLAREVYNDRAVQNFKFDVKAWVSVSDDFDVLRISRALL 249 (588)
Q Consensus 170 ~~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~il 249 (588)
.++|......++...+..... ....+.|.|.+|+||+++|+.+.+...... . .+-+++..-. ...+...+.
T Consensus 130 ~~ig~s~~~~~~~~~~~~~a~----~~~~vli~GesGtGKe~lAr~ih~~s~r~~-~---fv~vnc~~~~-~~~~~~~lf 200 (368)
T 3dzd_A 130 EFVGEHPKILEIKRLIPKIAK----SKAPVLITGESGTGKEIVARLIHRYSGRKG-A---FVDLNCASIP-QELAESELF 200 (368)
T ss_dssp CCCCCSHHHHHHHHHHHHHHT----SCSCEEEECCTTSSHHHHHHHHHHHHCCCS-C---EEEEESSSSC-TTTHHHHHH
T ss_pred cccccchHHHHHHhhhhhhhc----cchhheEEeCCCchHHHHHHHHHHhccccC-C---cEEEEcccCC-hHHHHHHhc
Confidence 467877666665555432211 112467999999999999999987543322 2 2234444321 111122222
Q ss_pred HHhcCCCCCC-CCHHHHHHHHHHHhcCCceeEEeccccccChhHHHHhhcccCCC------C-----CCcEEEEeecc
Q 007817 250 ESITSTNCDF-KTLNEVQVKLRIIVDGKKFLLVLDDVWNENYNLWEILKAPFMAG------A-----RNSKIIVTTCH 315 (588)
Q Consensus 250 ~~l~~~~~~~-~~~~~l~~~l~~~l~~k~~LLVlDdv~~~~~~~~~~l~~~l~~~------~-----~gs~ilvTTR~ 315 (588)
..-.+...+. ..... .+. . ...-.|+||++...+......|...+..+ + ...+||.+|..
T Consensus 201 g~~~g~~tga~~~~~g---~~~-~--a~~gtlfldei~~l~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~rii~at~~ 272 (368)
T 3dzd_A 201 GHEKGAFTGALTRKKG---KLE-L--ADQGTLFLDEVGELDQRVQAKLLRVLETGSFTRLGGNQKIEVDIRVISATNK 272 (368)
T ss_dssp EECSCSSSSCCCCEEC---HHH-H--TTTSEEEEETGGGSCHHHHHHHHHHHHHSEECCBTCCCBEECCCEEEEEESS
T ss_pred CccccccCCcccccCC---hHh-h--cCCCeEEecChhhCCHHHHHHHHHHHHhCCcccCCCCcceeeeeEEEEecCC
Confidence 1111111111 11000 111 1 12236899999887776666666555321 1 13467777653
No 326
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=91.99 E-value=0.23 Score=53.59 Aligned_cols=24 Identities=29% Similarity=0.408 Sum_probs=21.2
Q ss_pred EEEEEEccCCCcHHHHHHHHHccc
Q 007817 197 CVIPIVGMAGAGKTMLAREVYNDR 220 (588)
Q Consensus 197 ~vv~I~G~gGiGKTtLA~~v~~~~ 220 (588)
..++|+|+.|+|||||++.+..-.
T Consensus 368 ~~~~ivG~sGsGKSTll~~l~g~~ 391 (578)
T 4a82_A 368 ETVAFVGMSGGGKSTLINLIPRFY 391 (578)
T ss_dssp CEEEEECSTTSSHHHHHTTTTTSS
T ss_pred CEEEEECCCCChHHHHHHHHhcCC
Confidence 589999999999999999887644
No 327
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=91.92 E-value=0.12 Score=45.59 Aligned_cols=25 Identities=28% Similarity=0.409 Sum_probs=21.1
Q ss_pred eEEEEEEccCCCcHHHHHHHHHccc
Q 007817 196 FCVIPIVGMAGAGKTMLAREVYNDR 220 (588)
Q Consensus 196 ~~vv~I~G~gGiGKTtLA~~v~~~~ 220 (588)
..-|+|+|.+|+|||||...+....
T Consensus 4 ~~ki~i~G~~~vGKSsl~~~l~~~~ 28 (175)
T 2nzj_A 4 LYRVVLLGDPGVGKTSLASLFAGKQ 28 (175)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHCC-
T ss_pred EEEEEEECCCCccHHHHHHHHhcCC
Confidence 4568899999999999999997654
No 328
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=91.89 E-value=0.66 Score=47.76 Aligned_cols=26 Identities=27% Similarity=0.258 Sum_probs=23.1
Q ss_pred CCCeEEEEEEccCCCcHHHHHHHHHc
Q 007817 193 DANFCVIPIVGMAGAGKTMLAREVYN 218 (588)
Q Consensus 193 ~~~~~vv~I~G~gGiGKTtLA~~v~~ 218 (588)
....++..|.|.+|.||||+.+..++
T Consensus 158 ~~~~~v~~I~G~aGsGKTt~I~~~~~ 183 (446)
T 3vkw_A 158 VSSAKVVLVDGVPGCGKTKEILSRVN 183 (446)
T ss_dssp CCCSEEEEEEECTTSCHHHHHHHHCC
T ss_pred cccccEEEEEcCCCCCHHHHHHHHhc
Confidence 35678999999999999999998875
No 329
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=91.87 E-value=0.083 Score=53.59 Aligned_cols=25 Identities=24% Similarity=0.138 Sum_probs=22.1
Q ss_pred CeEEEEEEccCCCcHHHHHHHHHcc
Q 007817 195 NFCVIPIVGMAGAGKTMLAREVYND 219 (588)
Q Consensus 195 ~~~vv~I~G~gGiGKTtLA~~v~~~ 219 (588)
...+++|+|++|+|||||++.+...
T Consensus 168 ~~~~i~l~G~~GsGKSTl~~~l~~~ 192 (377)
T 1svm_A 168 KKRYWLFKGPIDSGKTTLAAALLEL 192 (377)
T ss_dssp TCCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhh
Confidence 3469999999999999999999874
No 330
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=91.84 E-value=0.1 Score=46.18 Aligned_cols=25 Identities=28% Similarity=0.368 Sum_probs=21.8
Q ss_pred CeEEEEEEccCCCcHHHHHHHHHcc
Q 007817 195 NFCVIPIVGMAGAGKTMLAREVYND 219 (588)
Q Consensus 195 ~~~vv~I~G~gGiGKTtLA~~v~~~ 219 (588)
+...|+|+|.+|+|||||...+...
T Consensus 7 ~~~~i~v~G~~~~GKssl~~~l~~~ 31 (178)
T 2lkc_A 7 RPPVVTIMGHVDHGKTTLLDAIRHS 31 (178)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4567889999999999999999764
No 331
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=91.83 E-value=0.083 Score=50.78 Aligned_cols=24 Identities=33% Similarity=0.387 Sum_probs=21.3
Q ss_pred EEEEEEccCCCcHHHHHHHHHccc
Q 007817 197 CVIPIVGMAGAGKTMLAREVYNDR 220 (588)
Q Consensus 197 ~vv~I~G~gGiGKTtLA~~v~~~~ 220 (588)
.+++|+|+.|+|||||.+.++.-.
T Consensus 31 e~~~i~G~NGsGKSTLlk~l~Gl~ 54 (263)
T 2pjz_A 31 EKVIILGPNGSGKTTLLRAISGLL 54 (263)
T ss_dssp SEEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEEECCCCCCHHHHHHHHhCCC
Confidence 489999999999999999998643
No 332
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=91.83 E-value=0.082 Score=52.44 Aligned_cols=26 Identities=38% Similarity=0.649 Sum_probs=23.2
Q ss_pred CeEEEEEEccCCCcHHHHHHHHHccc
Q 007817 195 NFCVIPIVGMAGAGKTMLAREVYNDR 220 (588)
Q Consensus 195 ~~~vv~I~G~gGiGKTtLA~~v~~~~ 220 (588)
..++++|+|+.|+|||||.+.+....
T Consensus 3 ~i~v~~i~G~~GaGKTTll~~l~~~~ 28 (318)
T 1nij_A 3 PIAVTLLTGFLGAGKTTLLRHILNEQ 28 (318)
T ss_dssp CEEEEEEEESSSSSCHHHHHHHHHSC
T ss_pred cccEEEEEecCCCCHHHHHHHHHhhc
Confidence 47899999999999999999998653
No 333
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=91.78 E-value=0.15 Score=45.03 Aligned_cols=26 Identities=23% Similarity=0.267 Sum_probs=21.9
Q ss_pred CeEEEEEEccCCCcHHHHHHHHHccc
Q 007817 195 NFCVIPIVGMAGAGKTMLAREVYNDR 220 (588)
Q Consensus 195 ~~~vv~I~G~gGiGKTtLA~~v~~~~ 220 (588)
..--|+|+|.+|+|||||...+.+..
T Consensus 5 ~~~ki~v~G~~~~GKssl~~~l~~~~ 30 (178)
T 2hxs_A 5 RQLKIVVLGDGASGKTSLTTCFAQET 30 (178)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHGGG
T ss_pred ceEEEEEECcCCCCHHHHHHHHHhCc
Confidence 44568899999999999999988653
No 334
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Probab=91.76 E-value=0.98 Score=45.92 Aligned_cols=47 Identities=21% Similarity=0.193 Sum_probs=32.7
Q ss_pred ceeechhhHHHHHHHHhcCCCCCCCCeEEEEEEccCCCcHHHHHHHHHccc
Q 007817 170 AVYGRDEDKARMLEMVLSDDPTTDANFCVIPIVGMAGAGKTMLAREVYNDR 220 (588)
Q Consensus 170 ~~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~ 220 (588)
.++|....+.++.+.+..-.. .... |.|.|.+|+|||++|+.+....
T Consensus 138 ~~ig~s~~m~~l~~~i~~~a~---~~~~-vli~Ge~GtGK~~lAr~ih~~s 184 (387)
T 1ny5_A 138 EYVFESPKMKEILEKIKKISC---AECP-VLITGESGVGKEVVARLIHKLS 184 (387)
T ss_dssp CCCCCSHHHHHHHHHHHHHTT---CCSC-EEEECSTTSSHHHHHHHHHHHS
T ss_pred hhhhccHHhhHHHHHHHHhcC---CCCC-eEEecCCCcCHHHHHHHHHHhc
Confidence 356666667776666554321 2233 4899999999999999998754
No 335
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=91.74 E-value=0.088 Score=47.37 Aligned_cols=24 Identities=25% Similarity=0.522 Sum_probs=20.9
Q ss_pred EEEEEEccCCCcHHHHHHHHHccc
Q 007817 197 CVIPIVGMAGAGKTMLAREVYNDR 220 (588)
Q Consensus 197 ~vv~I~G~gGiGKTtLA~~v~~~~ 220 (588)
--|+|+|.+|+|||||+..+....
T Consensus 22 ~ki~vvG~~~~GKSsli~~l~~~~ 45 (190)
T 3con_A 22 YKLVVVGAGGVGKSALTIQLIQNH 45 (190)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSS
T ss_pred eEEEEECcCCCCHHHHHHHHHcCC
Confidence 467899999999999999998654
No 336
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=91.74 E-value=0.09 Score=45.85 Aligned_cols=25 Identities=28% Similarity=0.482 Sum_probs=21.3
Q ss_pred eEEEEEEccCCCcHHHHHHHHHccc
Q 007817 196 FCVIPIVGMAGAGKTMLAREVYNDR 220 (588)
Q Consensus 196 ~~vv~I~G~gGiGKTtLA~~v~~~~ 220 (588)
..-|+|+|.+|+|||||...+....
T Consensus 4 ~~~i~v~G~~~~GKssl~~~l~~~~ 28 (168)
T 1u8z_A 4 LHKVIMVGSGGVGKSALTLQFMYDE 28 (168)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eEEEEEECCCCCCHHHHHHHHHhCc
Confidence 3568899999999999999998654
No 337
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=91.72 E-value=0.11 Score=46.89 Aligned_cols=26 Identities=19% Similarity=0.386 Sum_probs=21.8
Q ss_pred CeEEEEEEccCCCcHHHHHHHHHccc
Q 007817 195 NFCVIPIVGMAGAGKTMLAREVYNDR 220 (588)
Q Consensus 195 ~~~vv~I~G~gGiGKTtLA~~v~~~~ 220 (588)
....|+|+|.+|+|||||...+....
T Consensus 22 ~~~~i~v~G~~~~GKSsli~~l~~~~ 47 (195)
T 1svi_A 22 GLPEIALAGRSNVGKSSFINSLINRK 47 (195)
T ss_dssp CCCEEEEEEBTTSSHHHHHHHHHTC-
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 34678899999999999999998753
No 338
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=91.71 E-value=0.1 Score=51.36 Aligned_cols=42 Identities=12% Similarity=0.139 Sum_probs=29.9
Q ss_pred CCeEEEEEEccCCCcHHHHHHHHHcccccccccccEEEEEEeCCc
Q 007817 194 ANFCVIPIVGMAGAGKTMLAREVYNDRAVQNFKFDVKAWVSVSDD 238 (588)
Q Consensus 194 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~wv~v~~~ 238 (588)
...++|+|+|-||+||||+|..++......+ . .++-|++...
T Consensus 39 ~~~~vI~v~~KGGvGKTT~a~nLA~~La~~G--~-~VlliD~D~~ 80 (307)
T 3end_A 39 TGAKVFAVYGKGGIGKSTTSSNLSAAFSILG--K-RVLQIGCDPK 80 (307)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHHHHTT--C-CEEEEEESSS
T ss_pred CCceEEEEECCCCccHHHHHHHHHHHHHHCC--C-eEEEEeCCCC
Confidence 3568899999999999999988887665433 1 3555665433
No 339
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=91.71 E-value=0.17 Score=48.49 Aligned_cols=38 Identities=21% Similarity=0.173 Sum_probs=27.9
Q ss_pred HHHHHHHHhcCCCCCCCCeEEEEEEccCCCcHHHHHHHHHcc
Q 007817 178 KARMLEMVLSDDPTTDANFCVIPIVGMAGAGKTMLAREVYND 219 (588)
Q Consensus 178 ~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~ 219 (588)
...+..||.... +....+.|+|++|.|||.+|..+++.
T Consensus 90 ~~~l~~~l~~~~----~~~n~~~l~GppgtGKt~~a~ala~~ 127 (267)
T 1u0j_A 90 ASVFLGWATKKF----GKRNTIWLFGPATTGKTNIAEAIAHT 127 (267)
T ss_dssp HHHHHHHHTTCS----TTCCEEEEECSTTSSHHHHHHHHHHH
T ss_pred HHHHHHHHhCCC----CCCcEEEEECCCCCCHHHHHHHHHhh
Confidence 344666665321 23457999999999999999999884
No 340
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=91.66 E-value=0.29 Score=58.76 Aligned_cols=83 Identities=17% Similarity=0.141 Sum_probs=58.8
Q ss_pred CeEEEEEEccCCCcHHHHHHHHHcccccccccccEEEEEEeCCcccHHHHHHHHHHHhcCCCC-----CCCCHHHHHHHH
Q 007817 195 NFCVIPIVGMAGAGKTMLAREVYNDRAVQNFKFDVKAWVSVSDDFDVLRISRALLESITSTNC-----DFKTLNEVQVKL 269 (588)
Q Consensus 195 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~il~~l~~~~~-----~~~~~~~l~~~l 269 (588)
.-++|-|+|+.|+||||||.++...... .=...+|+.+....+..- ++.++.... .++..++....+
T Consensus 1430 rg~~iei~g~~~sGkttl~~~~~a~~~~---~g~~~~~i~~e~~~~~~~-----~~~~Gv~~~~l~~~~p~~~e~~l~~~ 1501 (1706)
T 3cmw_A 1430 MGRIVEIYGPESSGKTTLTLQVIAAAQR---EGKTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEIC 1501 (1706)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHHHHH---TTCCEEEECTTSCCCHHH-----HHHTTCCGGGCEEECCSSHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHHh---cCCeEEEEecCCCCCHHH-----HHHcCCCHHHeEEeCCCcHHHHHHHH
Confidence 3479999999999999999999875443 335688999887777653 666665433 344455555555
Q ss_pred HHHhc-CCceeEEeccc
Q 007817 270 RIIVD-GKKFLLVLDDV 285 (588)
Q Consensus 270 ~~~l~-~k~~LLVlDdv 285 (588)
...++ +..-++|+|-|
T Consensus 1502 ~~~~~s~~~~~vvvDsv 1518 (1706)
T 3cmw_A 1502 DALARSGAVDVIVVDSV 1518 (1706)
T ss_dssp HHHHHHTCCSEEEESCS
T ss_pred HHHHHcCCCCEEEEccH
Confidence 55554 66779999987
No 341
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=91.64 E-value=0.069 Score=51.31 Aligned_cols=26 Identities=23% Similarity=0.187 Sum_probs=22.8
Q ss_pred CeEEEEEEccCCCcHHHHHHHHHccc
Q 007817 195 NFCVIPIVGMAGAGKTMLAREVYNDR 220 (588)
Q Consensus 195 ~~~vv~I~G~gGiGKTtLA~~v~~~~ 220 (588)
+...|+|.|..|+||||+|+.+.+..
T Consensus 23 ~~~~I~ieG~~GsGKST~~~~L~~~l 48 (263)
T 1p5z_B 23 RIKKISIEGNIAAGKSTFVNILKQLC 48 (263)
T ss_dssp CCEEEEEECSTTSSHHHHHTTTGGGC
T ss_pred CceEEEEECCCCCCHHHHHHHHHHhc
Confidence 45799999999999999999988754
No 342
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=91.64 E-value=0.084 Score=46.17 Aligned_cols=22 Identities=32% Similarity=0.443 Sum_probs=19.3
Q ss_pred EEEEEccCCCcHHHHHHHHHcc
Q 007817 198 VIPIVGMAGAGKTMLAREVYND 219 (588)
Q Consensus 198 vv~I~G~gGiGKTtLA~~v~~~ 219 (588)
-|+|+|.+|+|||||...+.+.
T Consensus 4 ki~~vG~~~~GKSsli~~l~~~ 25 (166)
T 3q72_A 4 KVLLLGAPGVGKSALARIFGGV 25 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHCCC
T ss_pred EEEEECCCCCCHHHHHHHHcCc
Confidence 4789999999999999998754
No 343
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=91.60 E-value=0.098 Score=45.87 Aligned_cols=23 Identities=22% Similarity=0.426 Sum_probs=20.3
Q ss_pred EEEEEEccCCCcHHHHHHHHHcc
Q 007817 197 CVIPIVGMAGAGKTMLAREVYND 219 (588)
Q Consensus 197 ~vv~I~G~gGiGKTtLA~~v~~~ 219 (588)
--|+|+|.+|+|||||...+...
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~ 26 (172)
T 2erx_A 4 YRVAVFGAGGVGKSSLVLRFVKG 26 (172)
T ss_dssp EEEEEECCTTSSHHHHHHHHHTC
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 45789999999999999999874
No 344
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=91.60 E-value=0.095 Score=45.64 Aligned_cols=24 Identities=21% Similarity=0.428 Sum_probs=20.6
Q ss_pred EEEEEEccCCCcHHHHHHHHHccc
Q 007817 197 CVIPIVGMAGAGKTMLAREVYNDR 220 (588)
Q Consensus 197 ~vv~I~G~gGiGKTtLA~~v~~~~ 220 (588)
--|+|+|.+|+|||||...+....
T Consensus 4 ~~i~v~G~~~~GKSsli~~l~~~~ 27 (167)
T 1kao_A 4 YKVVVLGSGGVGKSALTVQFVTGT 27 (167)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEEECCCCCCHHHHHHHHHcCC
Confidence 458899999999999999987654
No 345
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=91.59 E-value=0.095 Score=45.95 Aligned_cols=26 Identities=19% Similarity=0.256 Sum_probs=21.8
Q ss_pred CeEEEEEEccCCCcHHHHHHHHHccc
Q 007817 195 NFCVIPIVGMAGAGKTMLAREVYNDR 220 (588)
Q Consensus 195 ~~~vv~I~G~gGiGKTtLA~~v~~~~ 220 (588)
..--|+|+|.+|+|||||...+....
T Consensus 5 ~~~~i~v~G~~~~GKssli~~l~~~~ 30 (170)
T 1z08_A 5 YSFKVVLLGEGCVGKTSLVLRYCENK 30 (170)
T ss_dssp EEEEEEEECCTTSCHHHHHHHHHHCC
T ss_pred cceEEEEECcCCCCHHHHHHHHHcCC
Confidence 34568899999999999999998653
No 346
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=91.57 E-value=0.1 Score=48.19 Aligned_cols=26 Identities=31% Similarity=0.239 Sum_probs=22.4
Q ss_pred CeEEEEEEccCCCcHHHHHHHHHccc
Q 007817 195 NFCVIPIVGMAGAGKTMLAREVYNDR 220 (588)
Q Consensus 195 ~~~vv~I~G~gGiGKTtLA~~v~~~~ 220 (588)
....|.|+|.+|+|||||+..+.+..
T Consensus 11 ~~~~i~~~G~~g~GKTsl~~~l~~~~ 36 (218)
T 1nrj_B 11 YQPSIIIAGPQNSGKTSLLTLLTTDS 36 (218)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 45678899999999999999998754
No 347
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=91.57 E-value=0.25 Score=45.16 Aligned_cols=27 Identities=19% Similarity=0.277 Sum_probs=23.0
Q ss_pred EEEEEccCCCcHHHHHHHHHccccccc
Q 007817 198 VIPIVGMAGAGKTMLAREVYNDRAVQN 224 (588)
Q Consensus 198 vv~I~G~gGiGKTtLA~~v~~~~~~~~ 224 (588)
.|+|-|..|+||||.++.+++....++
T Consensus 2 fI~~EG~DGsGKsTq~~~L~~~L~~~g 28 (197)
T 3hjn_A 2 FITFEGIDGSGKSTQIQLLAQYLEKRG 28 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCC
Confidence 478889999999999999998776543
No 348
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=91.57 E-value=0.1 Score=53.03 Aligned_cols=23 Identities=35% Similarity=0.518 Sum_probs=21.1
Q ss_pred EEEEEEccCCCcHHHHHHHHHcc
Q 007817 197 CVIPIVGMAGAGKTMLAREVYND 219 (588)
Q Consensus 197 ~vv~I~G~gGiGKTtLA~~v~~~ 219 (588)
.+|+|.|+.|+||||||..++..
T Consensus 3 ~~i~i~GptgsGKttla~~La~~ 25 (409)
T 3eph_A 3 KVIVIAGTTGVGKSQLSIQLAQK 25 (409)
T ss_dssp EEEEEEECSSSSHHHHHHHHHHH
T ss_pred cEEEEECcchhhHHHHHHHHHHH
Confidence 58999999999999999999874
No 349
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=91.57 E-value=0.07 Score=52.50 Aligned_cols=24 Identities=29% Similarity=0.505 Sum_probs=21.5
Q ss_pred EEEEEEccCCCcHHHHHHHHHccc
Q 007817 197 CVIPIVGMAGAGKTMLAREVYNDR 220 (588)
Q Consensus 197 ~vv~I~G~gGiGKTtLA~~v~~~~ 220 (588)
.+++|+|+.|+|||||++.+..-.
T Consensus 81 e~vaivG~sGsGKSTLl~ll~gl~ 104 (306)
T 3nh6_A 81 QTLALVGPSGAGKSTILRLLFRFY 104 (306)
T ss_dssp CEEEEESSSCHHHHHHHHHHTTSS
T ss_pred CEEEEECCCCchHHHHHHHHHcCC
Confidence 589999999999999999997644
No 350
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=91.55 E-value=0.1 Score=46.73 Aligned_cols=22 Identities=27% Similarity=0.465 Sum_probs=19.8
Q ss_pred EEEEEEccCCCcHHHHHHHHHc
Q 007817 197 CVIPIVGMAGAGKTMLAREVYN 218 (588)
Q Consensus 197 ~vv~I~G~gGiGKTtLA~~v~~ 218 (588)
.+.+|+|+.|+|||||+..++-
T Consensus 27 g~~~i~G~NGsGKStll~ai~~ 48 (182)
T 3kta_A 27 GFTAIVGANGSGKSNIGDAILF 48 (182)
T ss_dssp SEEEEEECTTSSHHHHHHHHHH
T ss_pred CcEEEECCCCCCHHHHHHHHHH
Confidence 3889999999999999999865
No 351
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=91.54 E-value=0.15 Score=45.19 Aligned_cols=26 Identities=23% Similarity=0.345 Sum_probs=22.4
Q ss_pred CeEEEEEEccCCCcHHHHHHHHHccc
Q 007817 195 NFCVIPIVGMAGAGKTMLAREVYNDR 220 (588)
Q Consensus 195 ~~~vv~I~G~gGiGKTtLA~~v~~~~ 220 (588)
...-|+|+|.+|+|||||...+.+..
T Consensus 8 ~~~~i~v~G~~~~GKssli~~l~~~~ 33 (181)
T 2fn4_A 8 ETHKLVVVGGGGVGKSALTIQFIQSY 33 (181)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHHSS
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCc
Confidence 45678999999999999999998763
No 352
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=91.52 E-value=0.098 Score=45.65 Aligned_cols=24 Identities=21% Similarity=0.396 Sum_probs=20.6
Q ss_pred EEEEEEccCCCcHHHHHHHHHccc
Q 007817 197 CVIPIVGMAGAGKTMLAREVYNDR 220 (588)
Q Consensus 197 ~vv~I~G~gGiGKTtLA~~v~~~~ 220 (588)
--|+|+|.+|+|||||...+.+..
T Consensus 4 ~ki~v~G~~~~GKssli~~l~~~~ 27 (167)
T 1c1y_A 4 YKLVVLGSGGVGKSALTVQFVQGI 27 (167)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHCC
T ss_pred eEEEEECCCCCCHHHHHHHHHcCC
Confidence 357899999999999999998653
No 353
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=91.52 E-value=0.098 Score=45.77 Aligned_cols=23 Identities=17% Similarity=0.354 Sum_probs=20.1
Q ss_pred EEEEEccCCCcHHHHHHHHHccc
Q 007817 198 VIPIVGMAGAGKTMLAREVYNDR 220 (588)
Q Consensus 198 vv~I~G~gGiGKTtLA~~v~~~~ 220 (588)
-|+|+|.+|+|||||...+.+..
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1ek0_A 5 KLVLLGEAAVGKSSIVLRFVSND 27 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 57899999999999999987654
No 354
>2ck3_A ATP synthase subunit alpha\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1bmf_A* 1e1q_A* 1e1r_A* 1e79_A* 1h8h_A* 1nbm_A* 1ohh_A* 1qo1_A 1w0j_A* 1w0k_A* 1h8e_A* 2jdi_A* 2wss_A* 2w6j_A 2w6e_A 2w6g_A 2w6f_A 2w6h_A 2w6i_A 1cow_A* ...
Probab=91.46 E-value=0.27 Score=51.32 Aligned_cols=100 Identities=16% Similarity=0.214 Sum_probs=56.0
Q ss_pred HHHHHHhcCCCCCCCCeEEEEEEccCCCcHHHHH-HHHHccccc----cccccc-EEEEEEeCCcc-cHHHHHHHHHHHh
Q 007817 180 RMLEMVLSDDPTTDANFCVIPIVGMAGAGKTMLA-REVYNDRAV----QNFKFD-VKAWVSVSDDF-DVLRISRALLESI 252 (588)
Q Consensus 180 ~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLA-~~v~~~~~~----~~~~f~-~~~wv~v~~~~-~~~~~~~~il~~l 252 (588)
+.++.|..-. .-.-++|+|.+|+|||+|| ..+.+.... .+ +.+ .++++-+++.. .+.++.+.+...=
T Consensus 151 raID~l~Pig-----rGQR~~I~g~~g~GKT~Lal~~I~~q~~~~~~~~~-~~d~~~V~~~IGeR~~Ev~~~~~~~~~~g 224 (510)
T 2ck3_A 151 KAVDSLVPIG-----RGQRELIIGDRQTGKTSIAIDTIINQKRFNDGTDE-KKKLYCIYVAIGQKRSTVAQLVKRLTDAD 224 (510)
T ss_dssp HHHHHHSCCB-----TTCBCEEEESTTSSHHHHHHHHHHHTHHHHTSCCT-TTCCEEEEEEESCCHHHHHHHHHHHHHTT
T ss_pred eeeccccccc-----cCCEEEEecCCCCCchHHHHHHHHHHHhhcccccc-CCCeEEEEEECCCCcHHHHHHHHHHHhcC
Confidence 4456665432 2356789999999999995 566665432 11 244 46677777654 4556666665421
Q ss_pred cCCC------CCCCC-HHH-----HHHHHHHHh--cCCceeEEeccc
Q 007817 253 TSTN------CDFKT-LNE-----VQVKLRIIV--DGKKFLLVLDDV 285 (588)
Q Consensus 253 ~~~~------~~~~~-~~~-----l~~~l~~~l--~~k~~LLVlDdv 285 (588)
.... ..... ... ....+.+++ +++..||++||+
T Consensus 225 ~m~~tvvV~atad~p~~~r~~a~~~a~tiAEyfrd~G~dVLli~Dsl 271 (510)
T 2ck3_A 225 AMKYTIVVSATASDAAPLQYLAPYSGCSMGEYFRDNGKHALIIYDDL 271 (510)
T ss_dssp CGGGEEEEEECTTSCHHHHHHHHHHHHHHHHHHHTTTCEEEEEEETH
T ss_pred CcccceEEEECCCCCHHHHHHHHHHHHHHHHHHHHcCCcEEEEEcCH
Confidence 1000 01111 111 111334444 578999999998
No 355
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=91.45 E-value=0.1 Score=45.76 Aligned_cols=24 Identities=21% Similarity=0.383 Sum_probs=21.0
Q ss_pred EEEEEEccCCCcHHHHHHHHHccc
Q 007817 197 CVIPIVGMAGAGKTMLAREVYNDR 220 (588)
Q Consensus 197 ~vv~I~G~gGiGKTtLA~~v~~~~ 220 (588)
--|+|+|.+|+|||||...+.+..
T Consensus 7 ~~i~v~G~~~~GKSsli~~l~~~~ 30 (170)
T 1z0j_A 7 LKVCLLGDTGVGKSSIMWRFVEDS 30 (170)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSC
T ss_pred eEEEEECcCCCCHHHHHHHHHcCC
Confidence 468899999999999999998764
No 356
>3vr4_A V-type sodium ATPase catalytic subunit A; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_A* 3vr2_A* 3vr5_A 3vr6_A*
Probab=91.45 E-value=0.57 Score=49.52 Aligned_cols=58 Identities=16% Similarity=0.268 Sum_probs=40.1
Q ss_pred HHHHHHhcCCCCCCCCeEEEEEEccCCCcHHHHHHHHHcccccccccccEEEEEEeCCcc-cHHHHHHH
Q 007817 180 RMLEMVLSDDPTTDANFCVIPIVGMAGAGKTMLAREVYNDRAVQNFKFDVKAWVSVSDDF-DVLRISRA 247 (588)
Q Consensus 180 ~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~wv~v~~~~-~~~~~~~~ 247 (588)
+.++.|..-. +-.-++|.|..|+|||+|+.++.+.. +-+.++++-+++.. ...+++.+
T Consensus 221 rvID~l~Pig-----rGqr~~Ifgg~g~GKT~L~~~ia~~~-----~~~v~V~~~iGER~~Ev~e~~~~ 279 (600)
T 3vr4_A 221 RVIDTFFPVT-----KGGAAAVPGPFGAGKTVVQHQIAKWS-----DVDLVVYVGCGERGNEMTDVVNE 279 (600)
T ss_dssp HHHHHHSCCB-----TTCEEEEECCTTSCHHHHHHHHHHHS-----SCSEEEEEEEEECHHHHHHHHHH
T ss_pred hhhhccCCcc-----CCCEEeeecCCCccHHHHHHHHHhcc-----CCCEEEEEEecccHHHHHHHHHH
Confidence 4566665432 33578999999999999999998753 34577888777653 34444444
No 357
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=91.45 E-value=0.12 Score=47.35 Aligned_cols=25 Identities=24% Similarity=0.193 Sum_probs=21.1
Q ss_pred eEEEEEEccCCCcHHHHHHHHHccc
Q 007817 196 FCVIPIVGMAGAGKTMLAREVYNDR 220 (588)
Q Consensus 196 ~~vv~I~G~gGiGKTtLA~~v~~~~ 220 (588)
.--|+|+|.+|+|||||...+.++.
T Consensus 30 ~~ki~vvG~~~~GKSsLi~~l~~~~ 54 (204)
T 4gzl_A 30 AIKCVVVGDGAVGKTCLLISYTTNA 54 (204)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHSC
T ss_pred eEEEEEECcCCCCHHHHHHHHHhCC
Confidence 3567899999999999998888653
No 358
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=91.44 E-value=0.12 Score=45.84 Aligned_cols=24 Identities=25% Similarity=0.333 Sum_probs=21.0
Q ss_pred EEEEEEccCCCcHHHHHHHHHccc
Q 007817 197 CVIPIVGMAGAGKTMLAREVYNDR 220 (588)
Q Consensus 197 ~vv~I~G~gGiGKTtLA~~v~~~~ 220 (588)
..|+|+|.+|+|||||...+....
T Consensus 5 ~ki~ivG~~g~GKStLl~~l~~~~ 28 (172)
T 2gj8_A 5 MKVVIAGRPNAGKSSLLNALAGRE 28 (172)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTSC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 468899999999999999998753
No 359
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=91.43 E-value=0.13 Score=45.59 Aligned_cols=26 Identities=38% Similarity=0.558 Sum_probs=22.2
Q ss_pred CeEEEEEEccCCCcHHHHHHHHHccc
Q 007817 195 NFCVIPIVGMAGAGKTMLAREVYNDR 220 (588)
Q Consensus 195 ~~~vv~I~G~gGiGKTtLA~~v~~~~ 220 (588)
...-|+|+|.+|+|||||...+....
T Consensus 7 ~~~~i~v~G~~~~GKSsli~~l~~~~ 32 (182)
T 1ky3_A 7 NILKVIILGDSGVGKTSLMHRYVNDK 32 (182)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSC
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhCc
Confidence 45678999999999999999987654
No 360
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=91.42 E-value=0.12 Score=46.29 Aligned_cols=25 Identities=28% Similarity=0.469 Sum_probs=21.8
Q ss_pred CeEEEEEEccCCCcHHHHHHHHHcc
Q 007817 195 NFCVIPIVGMAGAGKTMLAREVYND 219 (588)
Q Consensus 195 ~~~vv~I~G~gGiGKTtLA~~v~~~ 219 (588)
...-|+|+|.+|+|||||...+...
T Consensus 15 ~~~ki~ivG~~~vGKSsL~~~l~~~ 39 (181)
T 1fzq_A 15 QEVRILLLGLDNAGKTTLLKQLASE 39 (181)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHCCS
T ss_pred CceEEEEECCCCCCHHHHHHHHhcC
Confidence 4467889999999999999999875
No 361
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=91.34 E-value=0.14 Score=44.80 Aligned_cols=23 Identities=30% Similarity=0.368 Sum_probs=19.7
Q ss_pred EEEEEEccCCCcHHHHHHHHHcc
Q 007817 197 CVIPIVGMAGAGKTMLAREVYND 219 (588)
Q Consensus 197 ~vv~I~G~gGiGKTtLA~~v~~~ 219 (588)
--|+|+|.+|+|||||...+...
T Consensus 3 ~ki~ivG~~~~GKSsli~~l~~~ 25 (169)
T 3q85_A 3 FKVMLVGESGVGKSTLAGTFGGL 25 (169)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCC
T ss_pred EEEEEECCCCCCHHHHHHHHHhc
Confidence 45789999999999999998643
No 362
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=91.34 E-value=0.1 Score=46.90 Aligned_cols=26 Identities=23% Similarity=0.266 Sum_probs=21.4
Q ss_pred CeEEEEEEccCCCcHHHHHHHHHccc
Q 007817 195 NFCVIPIVGMAGAGKTMLAREVYNDR 220 (588)
Q Consensus 195 ~~~vv~I~G~gGiGKTtLA~~v~~~~ 220 (588)
..--|+|+|.+|+|||||...+.+..
T Consensus 19 ~~~ki~ivG~~~vGKSsL~~~~~~~~ 44 (184)
T 3ihw_A 19 PELKVGIVGNLSSGKSALVHRYLTGT 44 (184)
T ss_dssp CEEEEEEECCTTSCHHHHHHHHHHSS
T ss_pred CeeEEEEECCCCCCHHHHHHHHhcCC
Confidence 34578899999999999998887653
No 363
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=91.33 E-value=0.1 Score=52.38 Aligned_cols=24 Identities=33% Similarity=0.451 Sum_probs=21.4
Q ss_pred EEEEEEccCCCcHHHHHHHHHccc
Q 007817 197 CVIPIVGMAGAGKTMLAREVYNDR 220 (588)
Q Consensus 197 ~vv~I~G~gGiGKTtLA~~v~~~~ 220 (588)
.+++|+|+.|+|||||.+.++--.
T Consensus 31 e~~~llGpsGsGKSTLLr~iaGl~ 54 (359)
T 3fvq_A 31 EILFIIGASGCGKTTLLRCLAGFE 54 (359)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTSS
T ss_pred CEEEEECCCCchHHHHHHHHhcCC
Confidence 589999999999999999997643
No 364
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=91.32 E-value=0.099 Score=51.02 Aligned_cols=24 Identities=29% Similarity=0.477 Sum_probs=21.7
Q ss_pred EEEEEEccCCCcHHHHHHHHHccc
Q 007817 197 CVIPIVGMAGAGKTMLAREVYNDR 220 (588)
Q Consensus 197 ~vv~I~G~gGiGKTtLA~~v~~~~ 220 (588)
.+++|+|+.|+|||||.+.+..-.
T Consensus 65 e~~~i~G~NGsGKSTLlk~l~Gl~ 88 (290)
T 2bbs_A 65 QLLAVAGSTGAGKTSLLMMIMGEL 88 (290)
T ss_dssp CEEEEEESTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCcHHHHHHHHhcCC
Confidence 589999999999999999998754
No 365
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=91.30 E-value=0.12 Score=46.42 Aligned_cols=25 Identities=24% Similarity=0.444 Sum_probs=21.7
Q ss_pred eEEEEEEccCCCcHHHHHHHHHccc
Q 007817 196 FCVIPIVGMAGAGKTMLAREVYNDR 220 (588)
Q Consensus 196 ~~vv~I~G~gGiGKTtLA~~v~~~~ 220 (588)
...|+|+|.+|+|||||...+....
T Consensus 23 ~~~i~v~G~~~~GKSsli~~l~~~~ 47 (195)
T 3pqc_A 23 KGEVAFVGRSNVGKSSLLNALFNRK 47 (195)
T ss_dssp TCEEEEEEBTTSSHHHHHHHHHTSC
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCc
Confidence 3578899999999999999998764
No 366
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=91.27 E-value=0.12 Score=51.90 Aligned_cols=26 Identities=19% Similarity=0.130 Sum_probs=22.8
Q ss_pred CeEEEEEEccCCCcHHHHHHHHHccc
Q 007817 195 NFCVIPIVGMAGAGKTMLAREVYNDR 220 (588)
Q Consensus 195 ~~~vv~I~G~gGiGKTtLA~~v~~~~ 220 (588)
...+|+|+|.+|+|||||...+....
T Consensus 73 ~~~~v~lvG~pgaGKSTLln~L~~~~ 98 (349)
T 2www_A 73 LAFRVGLSGPPGAGKSTFIEYFGKML 98 (349)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHh
Confidence 45799999999999999999998743
No 367
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=91.26 E-value=0.1 Score=45.46 Aligned_cols=21 Identities=33% Similarity=0.463 Sum_probs=19.0
Q ss_pred EEEEccCCCcHHHHHHHHHcc
Q 007817 199 IPIVGMAGAGKTMLAREVYND 219 (588)
Q Consensus 199 v~I~G~gGiGKTtLA~~v~~~ 219 (588)
|+|+|.+|+|||||...+...
T Consensus 3 i~~~G~~~~GKssl~~~l~~~ 23 (164)
T 1r8s_A 3 ILMVGLDAAGKTTILYKLKLG 23 (164)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHcC
Confidence 789999999999999999764
No 368
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=91.26 E-value=0.11 Score=46.64 Aligned_cols=23 Identities=22% Similarity=0.364 Sum_probs=20.2
Q ss_pred EEEEEccCCCcHHHHHHHHHccc
Q 007817 198 VIPIVGMAGAGKTMLAREVYNDR 220 (588)
Q Consensus 198 vv~I~G~gGiGKTtLA~~v~~~~ 220 (588)
-|+|+|.+|+|||||...+....
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~~ 25 (190)
T 2cxx_A 3 TIIFAGRSNVGKSTLIYRLTGKK 25 (190)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSCC
T ss_pred EEEEECCCCCCHHHHHHHHhCcC
Confidence 47899999999999999998753
No 369
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=91.25 E-value=0.11 Score=46.02 Aligned_cols=26 Identities=19% Similarity=0.429 Sum_probs=21.8
Q ss_pred CeEEEEEEccCCCcHHHHHHHHHccc
Q 007817 195 NFCVIPIVGMAGAGKTMLAREVYNDR 220 (588)
Q Consensus 195 ~~~vv~I~G~gGiGKTtLA~~v~~~~ 220 (588)
...-|+|+|.+|+|||||...+....
T Consensus 6 ~~~~i~v~G~~~~GKSsli~~l~~~~ 31 (177)
T 1wms_A 6 SLFKVILLGDGGVGKSSLMNRYVTNK 31 (177)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHHSC
T ss_pred ceeEEEEECCCCCCHHHHHHHHHcCC
Confidence 34578999999999999999997653
No 370
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=91.25 E-value=0.14 Score=45.88 Aligned_cols=26 Identities=35% Similarity=0.405 Sum_probs=21.9
Q ss_pred CeEEEEEEccCCCcHHHHHHHHHccc
Q 007817 195 NFCVIPIVGMAGAGKTMLAREVYNDR 220 (588)
Q Consensus 195 ~~~vv~I~G~gGiGKTtLA~~v~~~~ 220 (588)
...-|+|+|.+|+|||||...+.+..
T Consensus 6 ~~~ki~v~G~~~vGKSsli~~l~~~~ 31 (184)
T 1m7b_A 6 VKCKIVVVGDSQCGKTALLHVFAKDC 31 (184)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHSC
T ss_pred eEEEEEEECCCCCCHHHHHHHHhcCC
Confidence 34567899999999999999998753
No 371
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=91.23 E-value=0.34 Score=52.63 Aligned_cols=119 Identities=18% Similarity=0.175 Sum_probs=58.3
Q ss_pred EEEEEEccCCCcHHHHHHHHHcccccccccccEEEEEEeCCcccHHHHHHHHH---HHhcCCCC-------CCCCHHHHH
Q 007817 197 CVIPIVGMAGAGKTMLAREVYNDRAVQNFKFDVKAWVSVSDDFDVLRISRALL---ESITSTNC-------DFKTLNEVQ 266 (588)
Q Consensus 197 ~vv~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~il---~~l~~~~~-------~~~~~~~l~ 266 (588)
+++.|.|.+|.||||++..+..........-...+.+..........+...+. ..++.... ...+...+.
T Consensus 165 ~~~vi~G~pGTGKTt~l~~ll~~l~~~~~~~~~~vll~APTg~AA~~L~e~~~~~~~~l~l~~~~~~~~~~~~~Tih~ll 244 (608)
T 1w36_D 165 RISVISGGPGTGKTTTVAKLLAALIQMADGERCRIRLAAPTGKAAARLTESLGKALRQLPLTDEQKKRIPEDASTLHRLL 244 (608)
T ss_dssp SEEEEECCTTSTHHHHHHHHHHHHHHTCSSCCCCEEEEBSSHHHHHHHHHHHTHHHHHSSCCSCCCCSCSCCCBTTTSCC
T ss_pred CCEEEEeCCCCCHHHHHHHHHHHHHHhhhcCCCeEEEEeCChhHHHHHHHHHHHHHhcCCCCHHHHhccchhhhhhHhhh
Confidence 58999999999999998877654431100112345555554433333333222 22211000 001110000
Q ss_pred ------HHHHHHhcC---CceeEEeccccccChhHHHHhhcccCCCCCCcEEEEeecchhhh
Q 007817 267 ------VKLRIIVDG---KKFLLVLDDVWNENYNLWEILKAPFMAGARNSKIIVTTCHSNVA 319 (588)
Q Consensus 267 ------~~l~~~l~~---k~~LLVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTTR~~~v~ 319 (588)
..+. .-.. +--+||+|.+...+......+...++ .+.++|+.--..+..
T Consensus 245 ~~~~~~~~~~-~~~~~~l~~d~lIIDEAsml~~~~~~~Ll~~l~---~~~~liLvGD~~QL~ 302 (608)
T 1w36_D 245 GAQPGSQRLR-HHAGNPLHLDVLVVDEASMIDLPMMSRLIDALP---DHARVIFLGDRDQLA 302 (608)
T ss_dssp ------------CTTSCCSCSEEEECSGGGCBHHHHHHHHHTCC---TTCEEEEEECTTSGG
T ss_pred ccCCCchHHH-hccCCCCCCCEEEEechhhCCHHHHHHHHHhCC---CCCEEEEEcchhhcC
Confidence 0010 1111 22389999997655555566665554 467777766444443
No 372
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=91.22 E-value=0.11 Score=52.31 Aligned_cols=24 Identities=33% Similarity=0.440 Sum_probs=21.3
Q ss_pred EEEEEEccCCCcHHHHHHHHHccc
Q 007817 197 CVIPIVGMAGAGKTMLAREVYNDR 220 (588)
Q Consensus 197 ~vv~I~G~gGiGKTtLA~~v~~~~ 220 (588)
.+++|+|+.|+|||||.+.+..-.
T Consensus 55 ei~~IiGpnGaGKSTLlr~i~GL~ 78 (366)
T 3tui_C 55 QIYGVIGASGAGKSTLIRCVNLLE 78 (366)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CEEEEEcCCCchHHHHHHHHhcCC
Confidence 589999999999999999997643
No 373
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=91.22 E-value=0.23 Score=48.40 Aligned_cols=43 Identities=19% Similarity=0.253 Sum_probs=29.7
Q ss_pred HHHHHHHHhcCCCCCCCCeEEEEEEccCCCcHHHHHHHHHccc
Q 007817 178 KARMLEMVLSDDPTTDANFCVIPIVGMAGAGKTMLAREVYNDR 220 (588)
Q Consensus 178 ~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~ 220 (588)
.+++.+.|.............|+|+|.+|+|||||...+....
T Consensus 8 ~~~l~~~l~~~~~~~~~~~~~i~vvG~~~~GKSSLln~l~g~~ 50 (299)
T 2aka_B 8 VNRLQDAFSAIGQNADLDLPQIAVVGGQSAGKSSVLENFVGRD 50 (299)
T ss_dssp HHHHHHHHTTSCCCTTCCCCEEEEEEBTTSCHHHHHHHHHTSC
T ss_pred HHHHHHHHHhcCCCCCCCCCeEEEEeCCCCCHHHHHHHHHCCC
Confidence 3455555544322122355689999999999999999998754
No 374
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=91.08 E-value=0.11 Score=46.72 Aligned_cols=26 Identities=31% Similarity=0.428 Sum_probs=21.7
Q ss_pred CeEEEEEEccCCCcHHHHHHHHHccc
Q 007817 195 NFCVIPIVGMAGAGKTMLAREVYNDR 220 (588)
Q Consensus 195 ~~~vv~I~G~gGiGKTtLA~~v~~~~ 220 (588)
..--|+|+|.+|+|||||...+.+..
T Consensus 20 ~~~ki~vvG~~~vGKTsLi~~l~~~~ 45 (187)
T 3c5c_A 20 LEVNLAILGRRGAGKSALTVKFLTKR 45 (187)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSS
T ss_pred ceEEEEEECCCCCcHHHHHHHHHhCC
Confidence 34568899999999999999887654
No 375
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=91.05 E-value=0.21 Score=46.47 Aligned_cols=28 Identities=18% Similarity=0.149 Sum_probs=22.7
Q ss_pred EEEEEEccCCCcHHHHHHHHHccccccc
Q 007817 197 CVIPIVGMAGAGKTMLAREVYNDRAVQN 224 (588)
Q Consensus 197 ~vv~I~G~gGiGKTtLA~~v~~~~~~~~ 224 (588)
-.|.+.|.||+||||+|..+......++
T Consensus 7 l~I~~~~kgGvGKTt~a~~la~~l~~~G 34 (228)
T 2r8r_A 7 LKVFLGAAPGVGKTYAMLQAAHAQLRQG 34 (228)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHHTT
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHCC
Confidence 4578899999999999988888765443
No 376
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=91.01 E-value=0.1 Score=46.18 Aligned_cols=26 Identities=23% Similarity=0.420 Sum_probs=22.1
Q ss_pred CeEEEEEEccCCCcHHHHHHHHHccc
Q 007817 195 NFCVIPIVGMAGAGKTMLAREVYNDR 220 (588)
Q Consensus 195 ~~~vv~I~G~gGiGKTtLA~~v~~~~ 220 (588)
...-|+|+|.+|+|||||...+....
T Consensus 8 ~~~~i~v~G~~~~GKssl~~~l~~~~ 33 (181)
T 3tw8_B 8 HLFKLLIIGDSGVGKSSLLLRFADNT 33 (181)
T ss_dssp EEEEEEEECCTTSCHHHHHHHHCSCC
T ss_pred cceEEEEECCCCCCHHHHHHHHhcCC
Confidence 45678999999999999999997653
No 377
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=91.01 E-value=0.12 Score=45.22 Aligned_cols=24 Identities=17% Similarity=0.264 Sum_probs=20.8
Q ss_pred eEEEEEEccCCCcHHHHHHHHHcc
Q 007817 196 FCVIPIVGMAGAGKTMLAREVYND 219 (588)
Q Consensus 196 ~~vv~I~G~gGiGKTtLA~~v~~~ 219 (588)
.--|+|+|.+|+|||||...+...
T Consensus 6 ~~~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1r2q_A 6 QFKLVLLGESAVGKSSLVLRFVKG 29 (170)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHHcC
Confidence 356889999999999999999864
No 378
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=90.95 E-value=0.12 Score=46.78 Aligned_cols=23 Identities=35% Similarity=0.476 Sum_probs=20.4
Q ss_pred EEEEEEccCCCcHHHHHHHHHcc
Q 007817 197 CVIPIVGMAGAGKTMLAREVYND 219 (588)
Q Consensus 197 ~vv~I~G~gGiGKTtLA~~v~~~ 219 (588)
..|+|+|.+|+|||||...+.+.
T Consensus 24 ~ki~~vG~~~vGKSsli~~l~~~ 46 (190)
T 1m2o_B 24 GKLLFLGLDNAGKTTLLHMLKND 46 (190)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHhcC
Confidence 46789999999999999999864
No 379
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=90.91 E-value=0.12 Score=51.85 Aligned_cols=24 Identities=25% Similarity=0.426 Sum_probs=21.3
Q ss_pred EEEEEEccCCCcHHHHHHHHHccc
Q 007817 197 CVIPIVGMAGAGKTMLAREVYNDR 220 (588)
Q Consensus 197 ~vv~I~G~gGiGKTtLA~~v~~~~ 220 (588)
.+++|+|+.|+|||||.+.++--.
T Consensus 42 e~~~llGpnGsGKSTLLr~iaGl~ 65 (355)
T 1z47_A 42 EMVGLLGPSGSGKTTILRLIAGLE 65 (355)
T ss_dssp CEEEEECSTTSSHHHHHHHHHTSS
T ss_pred CEEEEECCCCCcHHHHHHHHhCCC
Confidence 589999999999999999997643
No 380
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=90.86 E-value=0.12 Score=46.17 Aligned_cols=24 Identities=25% Similarity=0.511 Sum_probs=21.0
Q ss_pred EEEEEEccCCCcHHHHHHHHHccc
Q 007817 197 CVIPIVGMAGAGKTMLAREVYNDR 220 (588)
Q Consensus 197 ~vv~I~G~gGiGKTtLA~~v~~~~ 220 (588)
--|+|+|.+|+|||||...+.+..
T Consensus 5 ~ki~v~G~~~~GKSsli~~l~~~~ 28 (189)
T 4dsu_A 5 YKLVVVGADGVGKSALTIQLIQNH 28 (189)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSS
T ss_pred EEEEEECCCCCCHHHHHHHHHhCC
Confidence 467899999999999999998654
No 381
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=90.86 E-value=0.14 Score=46.23 Aligned_cols=27 Identities=19% Similarity=0.316 Sum_probs=22.7
Q ss_pred CCeEEEEEEccCCCcHHHHHHHHHccc
Q 007817 194 ANFCVIPIVGMAGAGKTMLAREVYNDR 220 (588)
Q Consensus 194 ~~~~vv~I~G~gGiGKTtLA~~v~~~~ 220 (588)
....-|+|+|.+|+|||||...+....
T Consensus 15 ~~~~ki~v~G~~~~GKSsl~~~l~~~~ 41 (199)
T 4bas_A 15 KTKLQVVMCGLDNSGKTTIINQVKPAQ 41 (199)
T ss_dssp -CEEEEEEECCTTSCHHHHHHHHSCCC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 356788999999999999999998754
No 382
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=90.85 E-value=0.19 Score=49.30 Aligned_cols=34 Identities=12% Similarity=0.297 Sum_probs=26.7
Q ss_pred HHHHHHHHhcCCCCCCCCeEEEEEEccCCCcHHHHHHHHHcccc
Q 007817 178 KARMLEMVLSDDPTTDANFCVIPIVGMAGAGKTMLAREVYNDRA 221 (588)
Q Consensus 178 ~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~ 221 (588)
+++|.+.+.. .+++|+|+.|+|||||.+.+. ...
T Consensus 156 i~~L~~~l~G---------~i~~l~G~sG~GKSTLln~l~-~~~ 189 (302)
T 2yv5_A 156 IDELVDYLEG---------FICILAGPSGVGKSSILSRLT-GEE 189 (302)
T ss_dssp HHHHHHHTTT---------CEEEEECSTTSSHHHHHHHHH-SCC
T ss_pred HHHHHhhccC---------cEEEEECCCCCCHHHHHHHHH-Hhh
Confidence 5666666531 488999999999999999998 543
No 383
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=90.85 E-value=0.12 Score=45.59 Aligned_cols=26 Identities=23% Similarity=0.364 Sum_probs=22.2
Q ss_pred CeEEEEEEccCCCcHHHHHHHHHccc
Q 007817 195 NFCVIPIVGMAGAGKTMLAREVYNDR 220 (588)
Q Consensus 195 ~~~vv~I~G~gGiGKTtLA~~v~~~~ 220 (588)
...-|+|+|.+|+|||||...+....
T Consensus 14 ~~~~i~v~G~~~~GKSsli~~l~~~~ 39 (179)
T 1z0f_A 14 YIFKYIIIGDMGVGKSCLLHQFTEKK 39 (179)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred cceEEEEECCCCCCHHHHHHHHHcCC
Confidence 34678899999999999999998654
No 384
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=90.80 E-value=0.15 Score=51.06 Aligned_cols=26 Identities=19% Similarity=0.212 Sum_probs=22.6
Q ss_pred CeEEEEEEccCCCcHHHHHHHHHccc
Q 007817 195 NFCVIPIVGMAGAGKTMLAREVYNDR 220 (588)
Q Consensus 195 ~~~vv~I~G~gGiGKTtLA~~v~~~~ 220 (588)
...+++|+|++|+|||||.+.+....
T Consensus 54 ~g~~v~i~G~~GaGKSTLl~~l~g~~ 79 (337)
T 2qm8_A 54 RAIRVGITGVPGVGKSTTIDALGSLL 79 (337)
T ss_dssp CSEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhh
Confidence 45799999999999999999998643
No 385
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=90.79 E-value=0.12 Score=46.07 Aligned_cols=26 Identities=23% Similarity=0.441 Sum_probs=21.9
Q ss_pred CeEEEEEEccCCCcHHHHHHHHHccc
Q 007817 195 NFCVIPIVGMAGAGKTMLAREVYNDR 220 (588)
Q Consensus 195 ~~~vv~I~G~gGiGKTtLA~~v~~~~ 220 (588)
...-|+|+|.+|+|||||...+.+..
T Consensus 9 ~~~ki~v~G~~~~GKSsli~~l~~~~ 34 (186)
T 2bme_A 9 FLFKFLVIGNAGTGKSCLLHQFIEKK 34 (186)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHSS
T ss_pred cceEEEEECCCCCCHHHHHHHHHcCC
Confidence 34578899999999999999998654
No 386
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=90.78 E-value=0.13 Score=45.56 Aligned_cols=23 Identities=26% Similarity=0.345 Sum_probs=20.2
Q ss_pred EEEEEEccCCCcHHHHHHHHHcc
Q 007817 197 CVIPIVGMAGAGKTMLAREVYND 219 (588)
Q Consensus 197 ~vv~I~G~gGiGKTtLA~~v~~~ 219 (588)
--|+|+|.+|+|||||...+...
T Consensus 15 ~~i~v~G~~~~GKssli~~l~~~ 37 (179)
T 2y8e_A 15 FKLVFLGEQSVGKTSLITRFMYD 37 (179)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 46789999999999999999754
No 387
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=90.76 E-value=0.17 Score=44.26 Aligned_cols=24 Identities=29% Similarity=0.491 Sum_probs=20.7
Q ss_pred EEEEEEccCCCcHHHHHHHHHccc
Q 007817 197 CVIPIVGMAGAGKTMLAREVYNDR 220 (588)
Q Consensus 197 ~vv~I~G~gGiGKTtLA~~v~~~~ 220 (588)
--|+|+|.+|+|||||...+....
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1g16_A 4 MKILLIGDSGVGKSCLLVRFVEDK 27 (170)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHCC
T ss_pred eEEEEECcCCCCHHHHHHHHHhCC
Confidence 468899999999999999998653
No 388
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=90.73 E-value=0.16 Score=44.45 Aligned_cols=25 Identities=32% Similarity=0.389 Sum_probs=21.2
Q ss_pred eEEEEEEccCCCcHHHHHHHHHccc
Q 007817 196 FCVIPIVGMAGAGKTMLAREVYNDR 220 (588)
Q Consensus 196 ~~vv~I~G~gGiGKTtLA~~v~~~~ 220 (588)
..-|+|+|.+|+|||||...+....
T Consensus 7 ~~~i~v~G~~~~GKssl~~~l~~~~ 31 (171)
T 1upt_A 7 EMRILILGLDGAGKTTILYRLQVGE 31 (171)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHSS
T ss_pred ccEEEEECCCCCCHHHHHHHHhcCC
Confidence 3568899999999999999997643
No 389
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=90.72 E-value=0.14 Score=46.59 Aligned_cols=23 Identities=30% Similarity=0.460 Sum_probs=20.1
Q ss_pred EEEEEEccCCCcHHHHHHHHHcc
Q 007817 197 CVIPIVGMAGAGKTMLAREVYND 219 (588)
Q Consensus 197 ~vv~I~G~gGiGKTtLA~~v~~~ 219 (588)
.-|+|+|.+|+|||||...+...
T Consensus 26 ~ki~lvG~~~vGKSsLi~~l~~~ 48 (198)
T 1f6b_A 26 GKLVFLGLDNAGKTTLLHMLKDD 48 (198)
T ss_dssp EEEEEEEETTSSHHHHHHHHSCC
T ss_pred cEEEEECCCCCCHHHHHHHHhcC
Confidence 45789999999999999998764
No 390
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=90.71 E-value=0.12 Score=48.42 Aligned_cols=25 Identities=24% Similarity=0.288 Sum_probs=21.5
Q ss_pred eEEEEEEccCCCcHHHHHHHHHccc
Q 007817 196 FCVIPIVGMAGAGKTMLAREVYNDR 220 (588)
Q Consensus 196 ~~vv~I~G~gGiGKTtLA~~v~~~~ 220 (588)
...++|.|++|+||||+|+.+.+..
T Consensus 8 ~~~~~~~G~pGsGKsT~a~~L~~~~ 32 (230)
T 3gmt_A 8 HMRLILLGAPGAGKGTQANFIKEKF 32 (230)
T ss_dssp -CEEEEECCTTSCHHHHHHHHHHHH
T ss_pred ccceeeECCCCCCHHHHHHHHHHHh
Confidence 3578999999999999999998754
No 391
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=90.70 E-value=0.13 Score=52.09 Aligned_cols=24 Identities=29% Similarity=0.405 Sum_probs=21.4
Q ss_pred EEEEEEccCCCcHHHHHHHHHccc
Q 007817 197 CVIPIVGMAGAGKTMLAREVYNDR 220 (588)
Q Consensus 197 ~vv~I~G~gGiGKTtLA~~v~~~~ 220 (588)
.+++|+|+.|+|||||.+.+.--.
T Consensus 30 e~~~llGpsGsGKSTLLr~iaGl~ 53 (381)
T 3rlf_A 30 EFVVFVGPSGCGKSTLLRMIAGLE 53 (381)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CEEEEEcCCCchHHHHHHHHHcCC
Confidence 589999999999999999997644
No 392
>3mfy_A V-type ATP synthase alpha chain; A-type ATP synthase, P loop, phenylalanine mutant, hydrolase; 2.35A {Pyrococcus horikoshii} PDB: 3i4l_A* 3i72_A 3i73_A* 3p20_A 3ikj_A 3qg1_A 3nd8_A 3nd9_A 1vdz_A 3qia_A 3qjy_A 3m4y_A 3se0_A 3sdz_A
Probab=90.68 E-value=0.45 Score=50.06 Aligned_cols=59 Identities=15% Similarity=0.253 Sum_probs=40.8
Q ss_pred HHHHHHhcCCCCCCCCeEEEEEEccCCCcHHHHHHHHHcccccccccccEEEEEEeCCccc-HHHHHHHH
Q 007817 180 RMLEMVLSDDPTTDANFCVIPIVGMAGAGKTMLAREVYNDRAVQNFKFDVKAWVSVSDDFD-VLRISRAL 248 (588)
Q Consensus 180 ~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~wv~v~~~~~-~~~~~~~i 248 (588)
+.++.|..-. +-.-++|.|..|+|||+|++++.+.. +-+.++++-+++... ..+++.++
T Consensus 216 rvID~l~Pig-----kGqr~~I~g~~g~GKT~L~~~ia~~~-----~~~~~V~~~iGER~~Ev~e~~~~~ 275 (588)
T 3mfy_A 216 RVIDTFFPQA-----KGGTAAIPGPAGSGKTVTQHQLAKWS-----DAQVVIYIGCGERGNEMTDVLEEF 275 (588)
T ss_dssp HHHHHHSCEE-----TTCEEEECSCCSHHHHHHHHHHHHHS-----SCSEEEEEECCSSSSHHHHHHHHT
T ss_pred chhhccCCcc-----cCCeEEeecCCCCCHHHHHHHHHhcc-----CCCEEEEEEecccHHHHHHHHHHH
Confidence 4566665332 23578999999999999999987742 345788888886654 44555543
No 393
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=90.68 E-value=0.14 Score=54.38 Aligned_cols=27 Identities=26% Similarity=0.402 Sum_probs=23.2
Q ss_pred CeEEEEEEccCCCcHHHHHHHHHcccc
Q 007817 195 NFCVIPIVGMAGAGKTMLAREVYNDRA 221 (588)
Q Consensus 195 ~~~vv~I~G~gGiGKTtLA~~v~~~~~ 221 (588)
...+|.++|++|+||||+|+.+.....
T Consensus 34 ~~~lIvlvGlpGSGKSTia~~La~~L~ 60 (520)
T 2axn_A 34 SPTVIVMVGLPARGKTYISKKLTRYLN 60 (520)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 347899999999999999999987553
No 394
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=90.65 E-value=0.13 Score=46.13 Aligned_cols=26 Identities=19% Similarity=0.287 Sum_probs=21.9
Q ss_pred CeEEEEEEccCCCcHHHHHHHHHccc
Q 007817 195 NFCVIPIVGMAGAGKTMLAREVYNDR 220 (588)
Q Consensus 195 ~~~vv~I~G~gGiGKTtLA~~v~~~~ 220 (588)
...-|+|+|.+|+|||||...+.+..
T Consensus 10 ~~~ki~v~G~~~~GKSsli~~l~~~~ 35 (195)
T 3bc1_A 10 YLIKFLALGDSGVGKTSVLYQYTDGK 35 (195)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eeEEEEEECCCCCCHHHHHHHHhcCC
Confidence 34578899999999999999998643
No 395
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=90.65 E-value=0.13 Score=45.81 Aligned_cols=25 Identities=24% Similarity=0.193 Sum_probs=21.0
Q ss_pred eEEEEEEccCCCcHHHHHHHHHccc
Q 007817 196 FCVIPIVGMAGAGKTMLAREVYNDR 220 (588)
Q Consensus 196 ~~vv~I~G~gGiGKTtLA~~v~~~~ 220 (588)
.--|+|+|.+|+|||||...+.+..
T Consensus 5 ~~~i~~~G~~~~GKssl~~~l~~~~ 29 (186)
T 1mh1_A 5 AIKCVVVGDGAVGKTCLLISYTTNA 29 (186)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEEEEECCCCCCHHHHHHHHHcCC
Confidence 3467899999999999999987643
No 396
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=90.65 E-value=0.099 Score=46.38 Aligned_cols=24 Identities=21% Similarity=0.274 Sum_probs=20.8
Q ss_pred eEEEEEEccCCCcHHHHHHHHHcc
Q 007817 196 FCVIPIVGMAGAGKTMLAREVYND 219 (588)
Q Consensus 196 ~~vv~I~G~gGiGKTtLA~~v~~~ 219 (588)
.--|+|+|.+|+|||||...+.+.
T Consensus 7 ~~ki~~vG~~~vGKTsli~~l~~~ 30 (178)
T 2iwr_A 7 ELRLGVLGDARSGKSSLIHRFLTG 30 (178)
T ss_dssp EEEEEEECCGGGCHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 346789999999999999998865
No 397
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=90.64 E-value=0.13 Score=46.31 Aligned_cols=25 Identities=24% Similarity=0.167 Sum_probs=20.4
Q ss_pred eEEEEEEccCCCcHHHHHHHHHccc
Q 007817 196 FCVIPIVGMAGAGKTMLAREVYNDR 220 (588)
Q Consensus 196 ~~vv~I~G~gGiGKTtLA~~v~~~~ 220 (588)
.--|+|+|.+|+|||||.+.+.+..
T Consensus 14 ~~ki~vvG~~~~GKssL~~~l~~~~ 38 (198)
T 3t1o_A 14 NFKIVYYGPGLSGKTTNLKWIYSKV 38 (198)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHTS
T ss_pred ccEEEEECCCCCCHHHHHHHHHhhc
Confidence 4568899999999999997776543
No 398
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=90.64 E-value=0.13 Score=52.03 Aligned_cols=25 Identities=20% Similarity=0.274 Sum_probs=22.0
Q ss_pred eEEEEEEccCCCcHHHHHHHHHccc
Q 007817 196 FCVIPIVGMAGAGKTMLAREVYNDR 220 (588)
Q Consensus 196 ~~vv~I~G~gGiGKTtLA~~v~~~~ 220 (588)
...++|+|+.|+|||||++.+..-.
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~gl~ 194 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAAVF 194 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHHHT
T ss_pred hCeEEEECCCCCCHHHHHHHHHHHh
Confidence 4689999999999999999998743
No 399
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=90.64 E-value=0.25 Score=46.27 Aligned_cols=26 Identities=27% Similarity=0.275 Sum_probs=20.2
Q ss_pred EEEEEEccCCCcHHHHHHHHHccccc
Q 007817 197 CVIPIVGMAGAGKTMLAREVYNDRAV 222 (588)
Q Consensus 197 ~vv~I~G~gGiGKTtLA~~v~~~~~~ 222 (588)
..|.|.|+.|+||||+++.+.+....
T Consensus 26 ~~I~~eG~~GsGKsT~~~~l~~~l~~ 51 (227)
T 3v9p_A 26 KFITFEGIDGAGKTTHLQWFCDRLQE 51 (227)
T ss_dssp CEEEEECCC---CHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 58999999999999999999987654
No 400
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=90.63 E-value=0.2 Score=44.55 Aligned_cols=26 Identities=23% Similarity=0.405 Sum_probs=22.1
Q ss_pred CeEEEEEEccCCCcHHHHHHHHHccc
Q 007817 195 NFCVIPIVGMAGAGKTMLAREVYNDR 220 (588)
Q Consensus 195 ~~~vv~I~G~gGiGKTtLA~~v~~~~ 220 (588)
..--|+|+|.+|+|||||...+.+..
T Consensus 17 ~~~ki~v~G~~~~GKSsl~~~l~~~~ 42 (183)
T 3kkq_A 17 PTYKLVVVGDGGVGKSALTIQFFQKI 42 (183)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCC
Confidence 44578899999999999999998653
No 401
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=90.63 E-value=0.13 Score=51.67 Aligned_cols=24 Identities=21% Similarity=0.236 Sum_probs=21.3
Q ss_pred EEEEEEccCCCcHHHHHHHHHccc
Q 007817 197 CVIPIVGMAGAGKTMLAREVYNDR 220 (588)
Q Consensus 197 ~vv~I~G~gGiGKTtLA~~v~~~~ 220 (588)
.+++|+|+.|+|||||.+.++--.
T Consensus 30 e~~~llGpnGsGKSTLLr~iaGl~ 53 (359)
T 2yyz_A 30 EFVALLGPSGCGKTTTLLMLAGIY 53 (359)
T ss_dssp CEEEEECSTTSSHHHHHHHHHTSS
T ss_pred CEEEEEcCCCchHHHHHHHHHCCC
Confidence 589999999999999999997643
No 402
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=90.57 E-value=0.13 Score=46.31 Aligned_cols=26 Identities=23% Similarity=0.364 Sum_probs=22.0
Q ss_pred CeEEEEEEccCCCcHHHHHHHHHccc
Q 007817 195 NFCVIPIVGMAGAGKTMLAREVYNDR 220 (588)
Q Consensus 195 ~~~vv~I~G~gGiGKTtLA~~v~~~~ 220 (588)
...-|+|+|.+|+|||||...+....
T Consensus 24 ~~~ki~v~G~~~~GKSsLi~~l~~~~ 49 (193)
T 2oil_A 24 FVFKVVLIGESGVGKTNLLSRFTRNE 49 (193)
T ss_dssp EEEEEEEESSTTSSHHHHHHHHHHSC
T ss_pred cceEEEEECcCCCCHHHHHHHHhcCC
Confidence 34578899999999999999988754
No 403
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=90.55 E-value=0.14 Score=45.71 Aligned_cols=25 Identities=28% Similarity=0.482 Sum_probs=21.5
Q ss_pred eEEEEEEccCCCcHHHHHHHHHccc
Q 007817 196 FCVIPIVGMAGAGKTMLAREVYNDR 220 (588)
Q Consensus 196 ~~vv~I~G~gGiGKTtLA~~v~~~~ 220 (588)
..-|+|+|.+|+|||||...+....
T Consensus 18 ~~ki~v~G~~~~GKSsli~~l~~~~ 42 (187)
T 2a9k_A 18 LHKVIMVGSGGVGKSALTLQFMYDE 42 (187)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred ceEEEEECCCCCCHHHHHHHHhhCC
Confidence 4568899999999999999998654
No 404
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=90.52 E-value=0.14 Score=45.48 Aligned_cols=25 Identities=28% Similarity=0.430 Sum_probs=21.4
Q ss_pred eEEEEEEccCCCcHHHHHHHHHccc
Q 007817 196 FCVIPIVGMAGAGKTMLAREVYNDR 220 (588)
Q Consensus 196 ~~vv~I~G~gGiGKTtLA~~v~~~~ 220 (588)
..-|+|+|.+|+|||||...+....
T Consensus 12 ~~ki~v~G~~~~GKSsli~~l~~~~ 36 (181)
T 2efe_B 12 NAKLVLLGDVGAGKSSLVLRFVKDQ 36 (181)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHCC
T ss_pred ceEEEEECcCCCCHHHHHHHHHcCC
Confidence 4568899999999999999988653
No 405
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=90.52 E-value=0.14 Score=51.63 Aligned_cols=24 Identities=21% Similarity=0.346 Sum_probs=21.4
Q ss_pred EEEEEEccCCCcHHHHHHHHHccc
Q 007817 197 CVIPIVGMAGAGKTMLAREVYNDR 220 (588)
Q Consensus 197 ~vv~I~G~gGiGKTtLA~~v~~~~ 220 (588)
.+++|+|+.|+|||||.+.++--.
T Consensus 30 e~~~llGpnGsGKSTLLr~iaGl~ 53 (362)
T 2it1_A 30 EFMALLGPSGSGKSTLLYTIAGIY 53 (362)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CEEEEECCCCchHHHHHHHHhcCC
Confidence 589999999999999999997643
No 406
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=90.52 E-value=0.088 Score=48.28 Aligned_cols=25 Identities=20% Similarity=0.270 Sum_probs=21.1
Q ss_pred eEEEEEEccCCCcHHHHHHHHHccc
Q 007817 196 FCVIPIVGMAGAGKTMLAREVYNDR 220 (588)
Q Consensus 196 ~~vv~I~G~gGiGKTtLA~~v~~~~ 220 (588)
...++|+|..|+|||||.+.+....
T Consensus 26 ~~~v~lvG~~g~GKSTLl~~l~g~~ 50 (210)
T 1pui_A 26 GIEVAFAGRSNAGKSSALNTLTNQK 50 (210)
T ss_dssp SEEEEEEECTTSSHHHHHTTTCCC-
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCC
Confidence 3689999999999999998887643
No 407
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10
Probab=90.51 E-value=0.15 Score=48.92 Aligned_cols=37 Identities=16% Similarity=0.178 Sum_probs=27.1
Q ss_pred EEEEEEccCCCcHHHHHHHHHcccccccccccEEEEEEeC
Q 007817 197 CVIPIVGMAGAGKTMLAREVYNDRAVQNFKFDVKAWVSVS 236 (588)
Q Consensus 197 ~vv~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~wv~v~ 236 (588)
++|+|.|-||+||||+|..+.......+ . .++-|+..
T Consensus 2 ~vI~vs~KGGvGKTT~a~nLA~~la~~G--~-~VlliD~D 38 (269)
T 1cp2_A 2 RQVAIYGKGGIGKSTTTQNLTSGLHAMG--K-TIMVVGCD 38 (269)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHHHTTT--C-CEEEEEEC
T ss_pred cEEEEecCCCCcHHHHHHHHHHHHHHCC--C-cEEEEcCC
Confidence 5788889999999999988887665433 2 34556554
No 408
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=90.49 E-value=0.14 Score=45.50 Aligned_cols=24 Identities=25% Similarity=0.192 Sum_probs=20.5
Q ss_pred EEEEEEccCCCcHHHHHHHHHccc
Q 007817 197 CVIPIVGMAGAGKTMLAREVYNDR 220 (588)
Q Consensus 197 ~vv~I~G~gGiGKTtLA~~v~~~~ 220 (588)
--|+|+|.+|+|||||...+....
T Consensus 9 ~ki~v~G~~~~GKssl~~~~~~~~ 32 (182)
T 3bwd_D 9 IKCVTVGDGAVGKTCLLISYTSNT 32 (182)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEEECCCCCCHHHHHHHHhcCC
Confidence 457899999999999999988653
No 409
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=90.48 E-value=0.084 Score=57.20 Aligned_cols=23 Identities=22% Similarity=0.281 Sum_probs=20.5
Q ss_pred EEEEEccCCCcHHHHHHHHHccc
Q 007817 198 VIPIVGMAGAGKTMLAREVYNDR 220 (588)
Q Consensus 198 vv~I~G~gGiGKTtLA~~v~~~~ 220 (588)
-+.++|++|+|||+||+.+++..
T Consensus 329 ~vLL~GppGtGKT~LAr~la~~~ 351 (595)
T 3f9v_A 329 HILIIGDPGTAKSQMLQFISRVA 351 (595)
T ss_dssp CEEEEESSCCTHHHHHHSSSTTC
T ss_pred ceEEECCCchHHHHHHHHHHHhC
Confidence 58899999999999999998754
No 410
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=90.44 E-value=0.14 Score=52.54 Aligned_cols=25 Identities=16% Similarity=0.329 Sum_probs=22.2
Q ss_pred CeEEEEEEccCCCcHHHHHHHHHcc
Q 007817 195 NFCVIPIVGMAGAGKTMLAREVYND 219 (588)
Q Consensus 195 ~~~vv~I~G~gGiGKTtLA~~v~~~ 219 (588)
...+++|+|+.|+|||||.+.+..-
T Consensus 68 ~~~~valvG~nGaGKSTLln~L~Gl 92 (413)
T 1tq4_A 68 SVLNVAVTGETGSGKSSFINTLRGI 92 (413)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHTC
T ss_pred CCeEEEEECCCCCcHHHHHHHHhCC
Confidence 3469999999999999999999873
No 411
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=90.44 E-value=0.97 Score=42.41 Aligned_cols=100 Identities=17% Similarity=0.139 Sum_probs=52.3
Q ss_pred EEEEccCCCcHHHHHHHHHcccccccccccEEEEEEeCCcccHHHHHHHHHHHhc---CC--------CCC-----CCCH
Q 007817 199 IPIVGMAGAGKTMLAREVYNDRAVQNFKFDVKAWVSVSDDFDVLRISRALLESIT---ST--------NCD-----FKTL 262 (588)
Q Consensus 199 v~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~il~~l~---~~--------~~~-----~~~~ 262 (588)
+.|+|+.|.|||.+|..+..... . .++++. ... .+..++.+.+. .. ... ..+.
T Consensus 111 ~ll~~~tG~GKT~~a~~~~~~~~-----~-~~liv~-P~~----~L~~q~~~~~~~~~~~~v~~~~g~~~~~~~i~v~T~ 179 (237)
T 2fz4_A 111 GCIVLPTGSGKTHVAMAAINELS-----T-PTLIVV-PTL----ALAEQWKERLGIFGEEYVGEFSGRIKELKPLTVSTY 179 (237)
T ss_dssp EEEEESSSTTHHHHHHHHHHHSC-----S-CEEEEE-SSH----HHHHHHHHHHGGGCGGGEEEESSSCBCCCSEEEEEH
T ss_pred EEEEeCCCCCHHHHHHHHHHHcC-----C-CEEEEe-CCH----HHHHHHHHHHHhCCCCeEEEEeCCCCCcCCEEEEeH
Confidence 77899999999999988876431 1 233332 211 22233333322 11 000 0112
Q ss_pred HHHHHHHHHHhcCCceeEEeccccccChhHHHHhhcccCCCCCCcEEEEee
Q 007817 263 NEVQVKLRIIVDGKKFLLVLDDVWNENYNLWEILKAPFMAGARNSKIIVTT 313 (588)
Q Consensus 263 ~~l~~~l~~~l~~k~~LLVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTT 313 (588)
+.+..... .+.++--+||+|+++......+..+...+. ...++++|.
T Consensus 180 ~~l~~~~~-~~~~~~~llIiDEaH~l~~~~~~~i~~~~~---~~~~l~LSA 226 (237)
T 2fz4_A 180 DSAYVNAE-KLGNRFMLLIFDEVHHLPAESYVQIAQMSI---APFRLGLTA 226 (237)
T ss_dssp HHHHHTHH-HHTTTCSEEEEECSSCCCTTTHHHHHHTCC---CSEEEEEEE
T ss_pred HHHHhhHH-HhcccCCEEEEECCccCCChHHHHHHHhcc---CCEEEEEec
Confidence 33333332 334445699999998765556666655543 234455554
No 412
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=90.43 E-value=0.14 Score=51.80 Aligned_cols=24 Identities=25% Similarity=0.329 Sum_probs=21.3
Q ss_pred EEEEEEccCCCcHHHHHHHHHccc
Q 007817 197 CVIPIVGMAGAGKTMLAREVYNDR 220 (588)
Q Consensus 197 ~vv~I~G~gGiGKTtLA~~v~~~~ 220 (588)
.+++|+|+.|+|||||.+.++--.
T Consensus 30 e~~~llGpnGsGKSTLLr~iaGl~ 53 (372)
T 1g29_1 30 EFMILLGPSGCGKTTTLRMIAGLE 53 (372)
T ss_dssp CEEEEECSTTSSHHHHHHHHHTSS
T ss_pred CEEEEECCCCcHHHHHHHHHHcCC
Confidence 489999999999999999997643
No 413
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=90.40 E-value=0.16 Score=49.98 Aligned_cols=28 Identities=21% Similarity=0.405 Sum_probs=24.1
Q ss_pred CCCeEEEEEEccCCCcHHHHHHHHHccc
Q 007817 193 DANFCVIPIVGMAGAGKTMLAREVYNDR 220 (588)
Q Consensus 193 ~~~~~vv~I~G~gGiGKTtLA~~v~~~~ 220 (588)
.+....|+|+|.+|+|||||...+....
T Consensus 7 ~~~~g~v~ivG~~nvGKSTLin~l~g~~ 34 (308)
T 3iev_A 7 HMKVGYVAIVGKPNVGKSTLLNNLLGTK 34 (308)
T ss_dssp CCEEEEEEEECSTTSSHHHHHHHHHTSC
T ss_pred CCCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 3467899999999999999999998753
No 414
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=90.39 E-value=0.2 Score=45.51 Aligned_cols=26 Identities=27% Similarity=0.460 Sum_probs=22.1
Q ss_pred CeEEEEEEccCCCcHHHHHHHHHccc
Q 007817 195 NFCVIPIVGMAGAGKTMLAREVYNDR 220 (588)
Q Consensus 195 ~~~vv~I~G~gGiGKTtLA~~v~~~~ 220 (588)
...-|+|+|.+|+|||||...+....
T Consensus 13 ~~~ki~v~G~~~~GKSsli~~l~~~~ 38 (206)
T 2bov_A 13 ALHKVIMVGSGGVGKSALTLQFMYDE 38 (206)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhCC
Confidence 45678899999999999999987654
No 415
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=90.39 E-value=0.14 Score=46.32 Aligned_cols=23 Identities=26% Similarity=0.492 Sum_probs=20.1
Q ss_pred eEEEEEEccCCCcHHHHHHHHHc
Q 007817 196 FCVIPIVGMAGAGKTMLAREVYN 218 (588)
Q Consensus 196 ~~vv~I~G~gGiGKTtLA~~v~~ 218 (588)
..-|+|+|.+|+|||||...+..
T Consensus 6 ~~kv~lvG~~~vGKSsL~~~~~~ 28 (192)
T 2cjw_A 6 YYRVVLIGEQGVGKSTLANIFAG 28 (192)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEEECCCCCCHHHHHHHHhc
Confidence 35688999999999999999874
No 416
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=90.38 E-value=0.15 Score=45.26 Aligned_cols=26 Identities=23% Similarity=0.332 Sum_probs=21.9
Q ss_pred CeEEEEEEccCCCcHHHHHHHHHccc
Q 007817 195 NFCVIPIVGMAGAGKTMLAREVYNDR 220 (588)
Q Consensus 195 ~~~vv~I~G~gGiGKTtLA~~v~~~~ 220 (588)
...-|+|+|.+|+|||||...+.+..
T Consensus 5 ~~~ki~~~G~~~~GKSsli~~l~~~~ 30 (181)
T 3t5g_A 5 KSRKIAILGYRSVGKSSLTIQFVEGQ 30 (181)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHSS
T ss_pred ceEEEEEECcCCCCHHHHHHHHHcCC
Confidence 34678899999999999999998543
No 417
>3oaa_A ATP synthase subunit alpha; rossmann fold, hydrolase, hydrolase-transport PROT complex; HET: ANP ADP; 3.26A {Escherichia coli DH1} PDB: 2a7u_A
Probab=90.37 E-value=0.81 Score=47.59 Aligned_cols=84 Identities=21% Similarity=0.262 Sum_probs=49.6
Q ss_pred EEEEEEccCCCcHHHHH-HHHHccccccccccc-EEEEEEeCCcc-cHHHHHHHHHHHhcCCCC-----CC-CC-HHH--
Q 007817 197 CVIPIVGMAGAGKTMLA-REVYNDRAVQNFKFD-VKAWVSVSDDF-DVLRISRALLESITSTNC-----DF-KT-LNE-- 264 (588)
Q Consensus 197 ~vv~I~G~gGiGKTtLA-~~v~~~~~~~~~~f~-~~~wv~v~~~~-~~~~~~~~il~~l~~~~~-----~~-~~-~~~-- 264 (588)
.-++|.|..|+|||+|| ..+.+.. ..+ .++++-+++.. .+.++.+.+.+.-..... .. +. ...
T Consensus 163 QR~~Ifg~~g~GKT~l~l~~I~n~~-----~~dv~~V~~~IGeR~~ev~e~~~~l~~~g~m~~tvvV~atad~p~~~r~~ 237 (513)
T 3oaa_A 163 QRELIIGDRQTGKTALAIDAIINQR-----DSGIKCIYVAIGQKASTISNVVRKLEEHGALANTIVVVATASESAALQYL 237 (513)
T ss_dssp CBCEEEESSSSSHHHHHHHHHHTTS-----SSSCEEEEEEESCCHHHHHHHHHHHHHHSCSTTEEEEEECTTSCHHHHHH
T ss_pred CEEEeecCCCCCcchHHHHHHHhhc-----cCCceEEEEEecCChHHHHHHHHHHhhcCcccceEEEEECCCCChHHHHH
Confidence 46789999999999996 5666642 233 35678887664 355666665543111110 11 11 111
Q ss_pred ---HHHHHHHHh--cCCceeEEeccc
Q 007817 265 ---VQVKLRIIV--DGKKFLLVLDDV 285 (588)
Q Consensus 265 ---l~~~l~~~l--~~k~~LLVlDdv 285 (588)
....+.+++ +++..||++||+
T Consensus 238 a~~~a~tiAEyfrd~G~dVLli~Dsl 263 (513)
T 3oaa_A 238 APYAGCAMGEYFRDRGEDALIIYDDL 263 (513)
T ss_dssp HHHHHHHHHHHHHHTTCEEEEEEETH
T ss_pred HHHHHHHHHHHHHhcCCCEEEEecCh
Confidence 111233343 589999999998
No 418
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=90.35 E-value=0.12 Score=47.80 Aligned_cols=23 Identities=35% Similarity=0.496 Sum_probs=20.7
Q ss_pred EEEEEEccCCCcHHHHHHHHHcc
Q 007817 197 CVIPIVGMAGAGKTMLAREVYND 219 (588)
Q Consensus 197 ~vv~I~G~gGiGKTtLA~~v~~~ 219 (588)
.+|+|.|+.|+||||+++.+...
T Consensus 4 ~~i~i~G~~gsGkst~~~~l~~~ 26 (219)
T 2h92_A 4 INIALDGPAAAGKSTIAKRVASE 26 (219)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 47899999999999999999874
No 419
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=90.35 E-value=0.15 Score=51.67 Aligned_cols=23 Identities=26% Similarity=0.353 Sum_probs=20.9
Q ss_pred EEEEEEccCCCcHHHHHHHHHcc
Q 007817 197 CVIPIVGMAGAGKTMLAREVYND 219 (588)
Q Consensus 197 ~vv~I~G~gGiGKTtLA~~v~~~ 219 (588)
.+++|+|+.|+|||||.+.++--
T Consensus 38 e~~~llGpnGsGKSTLLr~iaGl 60 (372)
T 1v43_A 38 EFLVLLGPSGCGKTTTLRMIAGL 60 (372)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTS
T ss_pred CEEEEECCCCChHHHHHHHHHcC
Confidence 58999999999999999999764
No 420
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=90.34 E-value=0.15 Score=45.26 Aligned_cols=26 Identities=27% Similarity=0.304 Sum_probs=21.8
Q ss_pred CeEEEEEEccCCCcHHHHHHHHHccc
Q 007817 195 NFCVIPIVGMAGAGKTMLAREVYNDR 220 (588)
Q Consensus 195 ~~~vv~I~G~gGiGKTtLA~~v~~~~ 220 (588)
..--|+|+|.+|+|||||...+....
T Consensus 9 ~~~~i~v~G~~~~GKssli~~l~~~~ 34 (180)
T 2g6b_A 9 VAFKVMLVGDSGVGKTCLLVRFKDGA 34 (180)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred cceEEEEECcCCCCHHHHHHHHHhCC
Confidence 34578899999999999999987654
No 421
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=90.34 E-value=0.14 Score=46.31 Aligned_cols=25 Identities=32% Similarity=0.461 Sum_probs=21.3
Q ss_pred eEEEEEEccCCCcHHHHHHHHHccc
Q 007817 196 FCVIPIVGMAGAGKTMLAREVYNDR 220 (588)
Q Consensus 196 ~~vv~I~G~gGiGKTtLA~~v~~~~ 220 (588)
..-|+|+|.+|+|||||...+....
T Consensus 28 ~~ki~v~G~~~vGKSsli~~l~~~~ 52 (196)
T 2atv_A 28 EVKLAIFGRAGVGKSALVVRFLTKR 52 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHSC
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCC
Confidence 3567899999999999999998753
No 422
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=90.33 E-value=0.18 Score=47.08 Aligned_cols=26 Identities=19% Similarity=0.202 Sum_probs=22.2
Q ss_pred CeEEEEEEccCCCcHHHHHHHHHccc
Q 007817 195 NFCVIPIVGMAGAGKTMLAREVYNDR 220 (588)
Q Consensus 195 ~~~vv~I~G~gGiGKTtLA~~v~~~~ 220 (588)
....|+|+|.+|+|||||...+....
T Consensus 28 ~~~kI~vvG~~~vGKSsLin~l~~~~ 53 (228)
T 2qu8_A 28 HKKTIILSGAPNVGKSSFMNIVSRAN 53 (228)
T ss_dssp TSEEEEEECSTTSSHHHHHHHHTTTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 44678899999999999999998753
No 423
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=90.31 E-value=0.28 Score=52.71 Aligned_cols=28 Identities=21% Similarity=0.239 Sum_probs=24.0
Q ss_pred CCeEEEEEEccCCCcHHHHHHHHHcccc
Q 007817 194 ANFCVIPIVGMAGAGKTMLAREVYNDRA 221 (588)
Q Consensus 194 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~ 221 (588)
+...+|.|.|++|+||||+|+.+.+...
T Consensus 394 q~~~~I~l~GlsGSGKSTiA~~La~~L~ 421 (573)
T 1m8p_A 394 TQGFTIFLTGYMNSGKDAIARALQVTLN 421 (573)
T ss_dssp TCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred ccceEEEeecCCCCCHHHHHHHHHHHhc
Confidence 3457899999999999999999988654
No 424
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=90.27 E-value=0.14 Score=46.90 Aligned_cols=26 Identities=35% Similarity=0.405 Sum_probs=22.0
Q ss_pred CeEEEEEEccCCCcHHHHHHHHHccc
Q 007817 195 NFCVIPIVGMAGAGKTMLAREVYNDR 220 (588)
Q Consensus 195 ~~~vv~I~G~gGiGKTtLA~~v~~~~ 220 (588)
...-|+|+|.+|+|||||+..+....
T Consensus 27 ~~~ki~vvG~~~vGKSsLi~~l~~~~ 52 (205)
T 1gwn_A 27 VKCKIVVVGDSQCGKTALLHVFAKDC 52 (205)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHSC
T ss_pred eeeEEEEECCCCCCHHHHHHHHhcCC
Confidence 34578899999999999999998753
No 425
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=90.20 E-value=0.15 Score=46.05 Aligned_cols=25 Identities=20% Similarity=0.327 Sum_probs=21.5
Q ss_pred eEEEEEEccCCCcHHHHHHHHHccc
Q 007817 196 FCVIPIVGMAGAGKTMLAREVYNDR 220 (588)
Q Consensus 196 ~~vv~I~G~gGiGKTtLA~~v~~~~ 220 (588)
.--|+|+|.+|+|||||...+....
T Consensus 23 ~~ki~vvG~~~~GKSsli~~l~~~~ 47 (192)
T 2fg5_A 23 ELKVCLLGDTGVGKSSIVCRFVQDH 47 (192)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHCC
T ss_pred ceEEEEECcCCCCHHHHHHHHhcCC
Confidence 4568899999999999999998654
No 426
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=90.19 E-value=0.15 Score=46.68 Aligned_cols=26 Identities=35% Similarity=0.455 Sum_probs=21.7
Q ss_pred CeEEEEEEccCCCcHHHHHHHHHccc
Q 007817 195 NFCVIPIVGMAGAGKTMLAREVYNDR 220 (588)
Q Consensus 195 ~~~vv~I~G~gGiGKTtLA~~v~~~~ 220 (588)
...-|+|+|.+|+|||||...+.+..
T Consensus 25 ~~~ki~lvG~~~vGKSsLi~~l~~~~ 50 (201)
T 2ew1_A 25 FLFKIVLIGNAGVGKTCLVRRFTQGL 50 (201)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHSS
T ss_pred cceEEEEECcCCCCHHHHHHHHHhCC
Confidence 34578899999999999999987653
No 427
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=90.19 E-value=0.16 Score=46.29 Aligned_cols=25 Identities=28% Similarity=0.351 Sum_probs=21.6
Q ss_pred eEEEEEEccCCCcHHHHHHHHHccc
Q 007817 196 FCVIPIVGMAGAGKTMLAREVYNDR 220 (588)
Q Consensus 196 ~~vv~I~G~gGiGKTtLA~~v~~~~ 220 (588)
..-|+|+|.+|+|||||...+....
T Consensus 8 ~~ki~v~G~~~~GKSsli~~l~~~~ 32 (203)
T 1zbd_A 8 MFKILIIGNSSVGKTSFLFRYADDS 32 (203)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHTCC
T ss_pred eeEEEEECCCCCCHHHHHHHHhcCC
Confidence 4568899999999999999998754
No 428
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=90.17 E-value=0.15 Score=46.15 Aligned_cols=23 Identities=22% Similarity=0.485 Sum_probs=19.9
Q ss_pred EEEEEEccCCCcHHHHHHHHHcc
Q 007817 197 CVIPIVGMAGAGKTMLAREVYND 219 (588)
Q Consensus 197 ~vv~I~G~gGiGKTtLA~~v~~~ 219 (588)
.-|+|+|.+|+|||||.+.+.+.
T Consensus 21 ~ki~~vG~~~vGKTsLi~~l~~~ 43 (196)
T 3llu_A 21 PRILLMGLRRSGKSSIQKVVFHK 43 (196)
T ss_dssp CEEEEEESTTSSHHHHHHHHHSC
T ss_pred eEEEEECCCCCCHHHHHHHHHhc
Confidence 46789999999999999987764
No 429
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=90.16 E-value=0.38 Score=44.83 Aligned_cols=106 Identities=9% Similarity=-0.019 Sum_probs=54.5
Q ss_pred eEEEEEEccCCCcHHHHHHHHHcccccccccccEEEEEEeC-CcccHHHHHHHHHHHhcCCCC--CCCCHHHHHHHHHHH
Q 007817 196 FCVIPIVGMAGAGKTMLAREVYNDRAVQNFKFDVKAWVSVS-DDFDVLRISRALLESITSTNC--DFKTLNEVQVKLRII 272 (588)
Q Consensus 196 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~wv~v~-~~~~~~~~~~~il~~l~~~~~--~~~~~~~l~~~l~~~ 272 (588)
-.+..++|.-|.||||-+.....+.... ...+.++-..- .... .. +...++.... ...+..++...+
T Consensus 19 g~l~v~~G~MgsGKTT~lL~~~~r~~~~--g~kvli~kp~~D~Ryg-~~----i~sr~G~~~~a~~i~~~~di~~~~--- 88 (234)
T 2orv_A 19 GQIQVILGPMFSGKSTELMRRVRRFQIA--QYKCLVIKYAKDTRYS-SS----FCTHDRNTMEALPACLLRDVAQEA--- 88 (234)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHHHTT--TCCEEEEEETTCCCC----------------CEEEEESSGGGGHHHH---
T ss_pred eEEEEEECCCCCcHHHHHHHHHHHHHHC--CCeEEEEeecCCccch-HH----HHhhcCCeeEEEecCCHHHHHHHh---
Confidence 3688999999999998887776665543 24444443322 2222 33 3333332211 111222222222
Q ss_pred hcCCceeEEeccccccChhHHHHhhcccCCCCCCcEEEEeecchh
Q 007817 273 VDGKKFLLVLDDVWNENYNLWEILKAPFMAGARNSKIIVTTCHSN 317 (588)
Q Consensus 273 l~~k~~LLVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTTR~~~ 317 (588)
++--+|++|.+.--. . ..++...+.. .|-.||+|.++.+
T Consensus 89 --~~~dvViIDEaQF~~-~-v~el~~~l~~--~gi~VI~~GL~~D 127 (234)
T 2orv_A 89 --LGVAVIGIDEGQFFP-D-IVEFCEAMAN--AGKTVIVAALDGT 127 (234)
T ss_dssp --TTCSEEEESSGGGCT-T-HHHHHHHHHH--TTCEEEEECCSBC
T ss_pred --ccCCEEEEEchhhhh-h-HHHHHHHHHh--CCCEEEEEecccc
Confidence 333499999986543 2 3344444433 4778999998843
No 430
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=90.14 E-value=0.15 Score=46.07 Aligned_cols=25 Identities=16% Similarity=0.263 Sum_probs=21.5
Q ss_pred eEEEEEEccCCCcHHHHHHHHHccc
Q 007817 196 FCVIPIVGMAGAGKTMLAREVYNDR 220 (588)
Q Consensus 196 ~~vv~I~G~gGiGKTtLA~~v~~~~ 220 (588)
.--|+|+|.+|+|||||...+....
T Consensus 7 ~~ki~v~G~~~~GKSsli~~l~~~~ 31 (208)
T 3clv_A 7 SYKTVLLGESSVGKSSIVLRLTKDT 31 (208)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHSC
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCc
Confidence 3567899999999999999998764
No 431
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=90.13 E-value=0.12 Score=51.73 Aligned_cols=24 Identities=29% Similarity=0.357 Sum_probs=21.4
Q ss_pred EEEEEEccCCCcHHHHHHHHHccc
Q 007817 197 CVIPIVGMAGAGKTMLAREVYNDR 220 (588)
Q Consensus 197 ~vv~I~G~gGiGKTtLA~~v~~~~ 220 (588)
.+++|+|+.|+|||||.+.++--.
T Consensus 27 e~~~llGpnGsGKSTLLr~iaGl~ 50 (348)
T 3d31_A 27 EYFVILGPTGAGKTLFLELIAGFH 50 (348)
T ss_dssp CEEEEECCCTHHHHHHHHHHHTSS
T ss_pred CEEEEECCCCccHHHHHHHHHcCC
Confidence 589999999999999999998643
No 432
>1fx0_A ATP synthase alpha chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_A*
Probab=90.11 E-value=0.31 Score=50.81 Aligned_cols=84 Identities=19% Similarity=0.209 Sum_probs=48.3
Q ss_pred EEEEEEccCCCcHHHHH-HHHHccccccccccc-EEEEEEeCCcc-cHHHHHHHHHHHhcC--------CCCCCCC----
Q 007817 197 CVIPIVGMAGAGKTMLA-REVYNDRAVQNFKFD-VKAWVSVSDDF-DVLRISRALLESITS--------TNCDFKT---- 261 (588)
Q Consensus 197 ~vv~I~G~gGiGKTtLA-~~v~~~~~~~~~~f~-~~~wv~v~~~~-~~~~~~~~il~~l~~--------~~~~~~~---- 261 (588)
.-++|+|.+|+|||+|| ..+.+.. ..+ .++++-+++.. .+.++.+.+.+.=.. ...++..
T Consensus 164 QR~~Ifg~~g~GKT~Lal~~I~~~~-----~~dv~~V~~~iGeR~~Ev~~~~~~~~~~g~m~rtvvV~atad~p~~~r~~ 238 (507)
T 1fx0_A 164 QRELIIGDRQTGKTAVATDTILNQQ-----GQNVICVYVAIGQKASSVAQVVTNFQERGAMEYTIVVAETADSPATLQYL 238 (507)
T ss_dssp CBCBEEESSSSSHHHHHHHHHHTCC-----TTTCEEEEEEESCCHHHHHHHHHHTGGGTGGGSEEEEEECTTSCGGGTTH
T ss_pred CEEEEecCCCCCccHHHHHHHHHhh-----cCCcEEEEEEcCCCchHHHHHHHHHHhcCccccceEEEECCCCCHHHHHH
Confidence 46789999999999996 5777653 234 35667777654 345555555432110 1111100
Q ss_pred HHHHHHHHHHHh--cCCceeEEeccc
Q 007817 262 LNEVQVKLRIIV--DGKKFLLVLDDV 285 (588)
Q Consensus 262 ~~~l~~~l~~~l--~~k~~LLVlDdv 285 (588)
.......+.+++ +++..||++||+
T Consensus 239 a~~~a~tiAEyfrd~G~dVLli~Dsl 264 (507)
T 1fx0_A 239 APYTGAALAEYFMYRERHTLIIYDDL 264 (507)
T ss_dssp HHHHHHHHHHHHHHTTCEEEEEEECH
T ss_pred HHHHHHHHHHHHHHcCCcEEEEEecH
Confidence 111222233333 589999999998
No 433
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=90.10 E-value=0.16 Score=45.71 Aligned_cols=25 Identities=20% Similarity=0.319 Sum_probs=21.6
Q ss_pred eEEEEEEccCCCcHHHHHHHHHccc
Q 007817 196 FCVIPIVGMAGAGKTMLAREVYNDR 220 (588)
Q Consensus 196 ~~vv~I~G~gGiGKTtLA~~v~~~~ 220 (588)
..-|+|+|.+|+|||||...+....
T Consensus 22 ~~ki~vvG~~~~GKSsli~~l~~~~ 46 (189)
T 2gf9_A 22 MFKLLLIGNSSVGKTSFLFRYADDS 46 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eeEEEEECCCCCCHHHHHHHHHcCC
Confidence 4578899999999999999998654
No 434
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=90.07 E-value=0.18 Score=50.51 Aligned_cols=26 Identities=23% Similarity=0.224 Sum_probs=22.6
Q ss_pred CeEEEEEEccCCCcHHHHHHHHHccc
Q 007817 195 NFCVIPIVGMAGAGKTMLAREVYNDR 220 (588)
Q Consensus 195 ~~~vv~I~G~gGiGKTtLA~~v~~~~ 220 (588)
+..+++|+|.+|+|||||+..+....
T Consensus 55 ~~~~i~i~G~~g~GKSTl~~~l~~~~ 80 (341)
T 2p67_A 55 NTLRLGVTGTPGAGKSTFLEAFGMLL 80 (341)
T ss_dssp CSEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHHH
Confidence 55899999999999999999987644
No 435
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=90.06 E-value=0.16 Score=45.71 Aligned_cols=25 Identities=20% Similarity=0.325 Sum_probs=21.4
Q ss_pred eEEEEEEccCCCcHHHHHHHHHccc
Q 007817 196 FCVIPIVGMAGAGKTMLAREVYNDR 220 (588)
Q Consensus 196 ~~vv~I~G~gGiGKTtLA~~v~~~~ 220 (588)
..-|+|+|.+|+|||||...+.+..
T Consensus 22 ~~ki~v~G~~~~GKSsli~~l~~~~ 46 (188)
T 1zd9_A 22 EMELTLVGLQYSGKTTFVNVIASGQ 46 (188)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred ccEEEEECCCCCCHHHHHHHHHcCC
Confidence 4568899999999999999998653
No 436
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=90.06 E-value=0.15 Score=46.34 Aligned_cols=26 Identities=27% Similarity=0.418 Sum_probs=22.4
Q ss_pred CeEEEEEEccCCCcHHHHHHHHHccc
Q 007817 195 NFCVIPIVGMAGAGKTMLAREVYNDR 220 (588)
Q Consensus 195 ~~~vv~I~G~gGiGKTtLA~~v~~~~ 220 (588)
...-|+|+|.+|+|||||...+.+..
T Consensus 23 ~~~ki~vvG~~~~GKSsli~~l~~~~ 48 (201)
T 3oes_A 23 RYRKVVILGYRCVGKTSLAHQFVEGE 48 (201)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHSC
T ss_pred CcEEEEEECCCCcCHHHHHHHHHhCC
Confidence 44678899999999999999998754
No 437
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=90.06 E-value=0.15 Score=45.99 Aligned_cols=24 Identities=25% Similarity=0.326 Sum_probs=20.9
Q ss_pred EEEEEEccCCCcHHHHHHHHHccc
Q 007817 197 CVIPIVGMAGAGKTMLAREVYNDR 220 (588)
Q Consensus 197 ~vv~I~G~gGiGKTtLA~~v~~~~ 220 (588)
--|+|+|.+|+|||||...+....
T Consensus 24 ~ki~v~G~~~~GKSsli~~l~~~~ 47 (191)
T 3dz8_A 24 FKLLIIGNSSVGKTSFLFRYADDT 47 (191)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHT
T ss_pred eEEEEECCCCcCHHHHHHHHhcCC
Confidence 467899999999999999998754
No 438
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=90.04 E-value=0.16 Score=49.78 Aligned_cols=25 Identities=28% Similarity=0.420 Sum_probs=22.1
Q ss_pred CeEEEEEEccCCCcHHHHHHHHHcc
Q 007817 195 NFCVIPIVGMAGAGKTMLAREVYND 219 (588)
Q Consensus 195 ~~~vv~I~G~gGiGKTtLA~~v~~~ 219 (588)
....|+|+|.+|+|||||...+...
T Consensus 7 r~~~VaIvG~~nvGKSTLln~L~g~ 31 (301)
T 1ega_A 7 YCGFIAIVGRPNVGKSTLLNKLLGQ 31 (301)
T ss_dssp EEEEEEEECSSSSSHHHHHHHHHTC
T ss_pred cCCEEEEECCCCCCHHHHHHHHHCC
Confidence 3468999999999999999999875
No 439
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=90.03 E-value=0.17 Score=51.30 Aligned_cols=108 Identities=10% Similarity=0.064 Sum_probs=55.3
Q ss_pred eEEEEEEccCCCcHHHHHHHHHcccccccccccEEEEEEeCCcccHHHHHHHHHHHhcCCCC--CCCCHHHHHHHHHHHh
Q 007817 196 FCVIPIVGMAGAGKTMLAREVYNDRAVQNFKFDVKAWVSVSDDFDVLRISRALLESITSTNC--DFKTLNEVQVKLRIIV 273 (588)
Q Consensus 196 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~il~~l~~~~~--~~~~~~~l~~~l~~~l 273 (588)
-.+++|+|+.|+|||||++.+........ -..++++. ++... ... ..+..-.. -..+...+...++..+
T Consensus 136 g~~i~ivG~~GsGKTTll~~l~~~~~~~~--~g~I~~~e--~~~e~--~~~---~~~~~v~Q~~~g~~~~~~~~~l~~~L 206 (372)
T 2ewv_A 136 MGLILVTGPTGSGKSTTIASMIDYINQTK--SYHIITIE--DPIEY--VFK---HKKSIVNQREVGEDTKSFADALRAAL 206 (372)
T ss_dssp SEEEEEECSSSSSHHHHHHHHHHHHHHHS--CCEEEEEE--SSCCS--CCC---CSSSEEEEEEBTTTBSCSHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhcCcCC--CcEEEEec--ccHhh--hhc---cCceEEEeeecCCCHHHHHHHHHHHh
Confidence 36899999999999999999987543210 11222322 11110 000 00000000 0001112244677777
Q ss_pred cCCceeEEeccccccChhHHHHhhcccCCCCCCcEEEEeecchh
Q 007817 274 DGKKFLLVLDDVWNENYNLWEILKAPFMAGARNSKIIVTTCHSN 317 (588)
Q Consensus 274 ~~k~~LLVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTTR~~~ 317 (588)
...+-+|++|.+.+ ......+.... ..|..|+.|+...+
T Consensus 207 ~~~pd~illdE~~d--~e~~~~~l~~~---~~g~~vi~t~H~~~ 245 (372)
T 2ewv_A 207 REDPDVIFVGEMRD--LETVETALRAA---ETGHLVFGTLHTNT 245 (372)
T ss_dssp TSCCSEEEESCCCS--HHHHHHHHHHH---TTTCEEEECCCCCS
T ss_pred hhCcCEEEECCCCC--HHHHHHHHHHH---hcCCEEEEEECcch
Confidence 77788999999953 33333322222 23566777776544
No 440
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=90.01 E-value=0.21 Score=47.07 Aligned_cols=26 Identities=27% Similarity=0.440 Sum_probs=22.6
Q ss_pred CeEEEEEEccCCCcHHHHHHHHHccc
Q 007817 195 NFCVIPIVGMAGAGKTMLAREVYNDR 220 (588)
Q Consensus 195 ~~~vv~I~G~gGiGKTtLA~~v~~~~ 220 (588)
....|+|+|.+|+|||||...+....
T Consensus 28 ~~~~i~lvG~~g~GKStlin~l~g~~ 53 (239)
T 3lxx_A 28 SQLRIVLVGKTGAGKSATGNSILGRK 53 (239)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHTSC
T ss_pred CceEEEEECCCCCCHHHHHHHHcCCC
Confidence 45688999999999999999998754
No 441
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=90.01 E-value=0.4 Score=52.52 Aligned_cols=63 Identities=21% Similarity=0.197 Sum_probs=40.2
Q ss_pred hhHHHHHHHHhcCCCCCCCCeEEEEEEccCCCcHHHHHHHHHcccccccccccEEEEEEeCCcccHHHHHHHHHH
Q 007817 176 EDKARMLEMVLSDDPTTDANFCVIPIVGMAGAGKTMLAREVYNDRAVQNFKFDVKAWVSVSDDFDVLRISRALLE 250 (588)
Q Consensus 176 ~e~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~il~ 250 (588)
...+.+...|... .+..|+||+|.|||+.+.++....-.. ...+.++......++.++..+..
T Consensus 193 ~Q~~AV~~al~~~--------~~~lI~GPPGTGKT~ti~~~I~~l~~~----~~~ILv~a~TN~AvD~i~erL~~ 255 (646)
T 4b3f_X 193 SQKEAVLFALSQK--------ELAIIHGPPGTGKTTTVVEIILQAVKQ----GLKVLCCAPSNIAVDNLVERLAL 255 (646)
T ss_dssp HHHHHHHHHHHCS--------SEEEEECCTTSCHHHHHHHHHHHHHHT----TCCEEEEESSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCC--------CceEEECCCCCCHHHHHHHHHHHHHhC----CCeEEEEcCchHHHHHHHHHHHh
Confidence 3455565555432 377899999999997655544433222 23577777777777777776643
No 442
>2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E* 1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A 1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A* 1rw4_A
Probab=90.00 E-value=0.18 Score=49.00 Aligned_cols=38 Identities=18% Similarity=0.129 Sum_probs=27.4
Q ss_pred EEEEEEccCCCcHHHHHHHHHcccccccccccEEEEEEeCC
Q 007817 197 CVIPIVGMAGAGKTMLAREVYNDRAVQNFKFDVKAWVSVSD 237 (588)
Q Consensus 197 ~vv~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~wv~v~~ 237 (588)
++|+|.|-||+||||+|..++......+ + .++-|++..
T Consensus 3 kvIavs~KGGvGKTT~a~nLA~~La~~G--~-rVlliD~D~ 40 (289)
T 2afh_E 3 RQCAIYGKGGIGKSTTTQNLVAALAEMG--K-KVMIVGCDP 40 (289)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHHHHTT--C-CEEEEEECS
T ss_pred eEEEEeCCCcCcHHHHHHHHHHHHHHCC--C-eEEEEecCC
Confidence 6788899999999999988887665432 2 345555543
No 443
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=90.00 E-value=0.16 Score=45.86 Aligned_cols=26 Identities=27% Similarity=0.261 Sum_probs=22.0
Q ss_pred CeEEEEEEccCCCcHHHHHHHHHccc
Q 007817 195 NFCVIPIVGMAGAGKTMLAREVYNDR 220 (588)
Q Consensus 195 ~~~vv~I~G~gGiGKTtLA~~v~~~~ 220 (588)
..--|+|+|.+|+|||||...+.+..
T Consensus 22 ~~~ki~~vG~~~~GKSsl~~~l~~~~ 47 (194)
T 3reg_A 22 KALKIVVVGDGAVGKTCLLLAFSKGE 47 (194)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eeeEEEEECcCCCCHHHHHHHHhcCC
Confidence 34578899999999999999998754
No 444
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=89.99 E-value=0.14 Score=50.28 Aligned_cols=22 Identities=27% Similarity=0.551 Sum_probs=18.7
Q ss_pred EEEEEccCCCcHHHHHHHHHcc
Q 007817 198 VIPIVGMAGAGKTMLAREVYND 219 (588)
Q Consensus 198 vv~I~G~gGiGKTtLA~~v~~~ 219 (588)
-|+|+|..|+|||||.+.++..
T Consensus 20 ~I~lvG~nG~GKSTLl~~L~g~ 41 (301)
T 2qnr_A 20 TLMVVGESGLGKSTLINSLFLT 41 (301)
T ss_dssp EEEEEEETTSSHHHHHHHHHC-
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 3499999999999999998753
No 445
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=89.96 E-value=0.21 Score=45.50 Aligned_cols=26 Identities=31% Similarity=0.454 Sum_probs=22.3
Q ss_pred CeEEEEEEccCCCcHHHHHHHHHccc
Q 007817 195 NFCVIPIVGMAGAGKTMLAREVYNDR 220 (588)
Q Consensus 195 ~~~vv~I~G~gGiGKTtLA~~v~~~~ 220 (588)
...-|+|+|.+|+|||||...+....
T Consensus 7 ~~~ki~v~G~~~~GKSsli~~l~~~~ 32 (207)
T 1vg8_A 7 VLLKVIILGDSGVGKTSLMNQYVNKK 32 (207)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSC
T ss_pred cceEEEEECcCCCCHHHHHHHHHcCC
Confidence 45678999999999999999987654
No 446
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=89.93 E-value=0.16 Score=46.19 Aligned_cols=26 Identities=23% Similarity=0.473 Sum_probs=20.8
Q ss_pred CeEEEEEEccCCCcHHHHHHHHHccc
Q 007817 195 NFCVIPIVGMAGAGKTMLAREVYNDR 220 (588)
Q Consensus 195 ~~~vv~I~G~gGiGKTtLA~~v~~~~ 220 (588)
..--|+|+|.+|+|||||...+....
T Consensus 24 ~~~ki~v~G~~~~GKSsLi~~l~~~~ 49 (200)
T 2o52_A 24 FLFKFLVIGSAGTGKSCLLHQFIENK 49 (200)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHC--
T ss_pred cceEEEEECcCCCCHHHHHHHHHhCC
Confidence 34578899999999999999987653
No 447
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=89.93 E-value=0.16 Score=45.71 Aligned_cols=25 Identities=28% Similarity=0.434 Sum_probs=21.3
Q ss_pred eEEEEEEccCCCcHHHHHHHHHccc
Q 007817 196 FCVIPIVGMAGAGKTMLAREVYNDR 220 (588)
Q Consensus 196 ~~vv~I~G~gGiGKTtLA~~v~~~~ 220 (588)
.--|+|+|.+|+|||||...+.+..
T Consensus 21 ~~ki~v~G~~~~GKSsli~~l~~~~ 45 (191)
T 2a5j_A 21 LFKYIIIGDTGVGKSCLLLQFTDKR 45 (191)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHSC
T ss_pred ceEEEEECcCCCCHHHHHHHHhcCC
Confidence 4568899999999999999998653
No 448
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=89.93 E-value=0.16 Score=45.72 Aligned_cols=26 Identities=23% Similarity=0.410 Sum_probs=22.2
Q ss_pred CeEEEEEEccCCCcHHHHHHHHHccc
Q 007817 195 NFCVIPIVGMAGAGKTMLAREVYNDR 220 (588)
Q Consensus 195 ~~~vv~I~G~gGiGKTtLA~~v~~~~ 220 (588)
...-|+|+|.+|+|||||...+....
T Consensus 15 ~~~ki~v~G~~~~GKSsli~~l~~~~ 40 (196)
T 3tkl_A 15 YLFKLLLIGDSGVGKSCLLLRFADDT 40 (196)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred cceEEEEECcCCCCHHHHHHHHHcCC
Confidence 34578999999999999999998754
No 449
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=89.90 E-value=0.17 Score=45.99 Aligned_cols=25 Identities=24% Similarity=0.175 Sum_probs=20.2
Q ss_pred eEEEEEEccCCCcHHHHHHHHHccc
Q 007817 196 FCVIPIVGMAGAGKTMLAREVYNDR 220 (588)
Q Consensus 196 ~~vv~I~G~gGiGKTtLA~~v~~~~ 220 (588)
..-|+|+|.+|+|||||...+.+..
T Consensus 20 ~~ki~~~G~~~~GKssl~~~l~~~~ 44 (201)
T 2q3h_A 20 GVKCVLVGDGAVGKTSLVVSYTTNG 44 (201)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHC--
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCC
Confidence 3567899999999999999988653
No 450
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=89.89 E-value=0.17 Score=45.88 Aligned_cols=24 Identities=29% Similarity=0.427 Sum_probs=20.7
Q ss_pred CeEEEEEEccCCCcHHHHHHHHHc
Q 007817 195 NFCVIPIVGMAGAGKTMLAREVYN 218 (588)
Q Consensus 195 ~~~vv~I~G~gGiGKTtLA~~v~~ 218 (588)
...-|+|+|.+|+|||||...+..
T Consensus 22 ~~~ki~vvG~~~vGKSsLi~~l~~ 45 (195)
T 3cbq_A 22 GIFKVMLVGESGVGKSTLAGTFGG 45 (195)
T ss_dssp CEEEEEEECSTTSSHHHHHHHTCC
T ss_pred cEEEEEEECCCCCCHHHHHHHHHh
Confidence 456789999999999999999854
No 451
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=89.85 E-value=0.17 Score=46.57 Aligned_cols=25 Identities=24% Similarity=0.410 Sum_probs=21.2
Q ss_pred eEEEEEEccCCCcHHHHHHHHHccc
Q 007817 196 FCVIPIVGMAGAGKTMLAREVYNDR 220 (588)
Q Consensus 196 ~~vv~I~G~gGiGKTtLA~~v~~~~ 220 (588)
...|+|+|.+|+|||||...+....
T Consensus 7 ~~ki~vvG~~~~GKTsli~~l~~~~ 31 (214)
T 2fh5_B 7 QRAVLFVGLCDSGKTLLFVRLLTGQ 31 (214)
T ss_dssp -CEEEEECSTTSSHHHHHHHHHHSC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 4578899999999999999998754
No 452
>3gqb_A V-type ATP synthase alpha chain; A3B3, V-ATPase, ATP synthesis, ATP-binding, hydrogen ION TRA hydrolase, ION transport; 2.80A {Thermus thermophilus HB8} PDB: 3a5c_A* 3a5d_A 3j0j_A* 1um2_C
Probab=89.77 E-value=0.45 Score=50.00 Aligned_cols=46 Identities=17% Similarity=0.209 Sum_probs=33.7
Q ss_pred EEEEEEccCCCcHHHHHHHHHcccccccccccEEEEEEeCCcc-cHHHHHHH
Q 007817 197 CVIPIVGMAGAGKTMLAREVYNDRAVQNFKFDVKAWVSVSDDF-DVLRISRA 247 (588)
Q Consensus 197 ~vv~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~wv~v~~~~-~~~~~~~~ 247 (588)
.-++|.|..|+|||+|+.++.+.. +-+.++++-+++.. ...+++.+
T Consensus 222 qr~~Ifg~~g~GKT~l~~~ia~~~-----~~~v~V~~~iGER~~Ev~e~~~~ 268 (578)
T 3gqb_A 222 GTAAIPGPFGSGKSVTQQSLAKWS-----NADVVVYVGSGERGNEMTDVLVE 268 (578)
T ss_dssp CEEEECCCTTSCHHHHHHHHHHHS-----SCSEEEEEEEEECHHHHHHHHTT
T ss_pred CEEeeeCCCCccHHHHHHHHHhcc-----CCCEEEEEEecccHHHHHHHHHH
Confidence 578999999999999999998753 34577788887653 33444433
No 453
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=89.77 E-value=0.17 Score=45.97 Aligned_cols=26 Identities=19% Similarity=0.285 Sum_probs=21.5
Q ss_pred CeEEEEEEccCCCcHHHHHHHHHccc
Q 007817 195 NFCVIPIVGMAGAGKTMLAREVYNDR 220 (588)
Q Consensus 195 ~~~vv~I~G~gGiGKTtLA~~v~~~~ 220 (588)
...-|+|+|.+|+|||||...+....
T Consensus 27 ~~~ki~v~G~~~~GKSsli~~l~~~~ 52 (199)
T 2p5s_A 27 KAYKIVLAGDAAVGKSSFLMRLCKNE 52 (199)
T ss_dssp -CEEEEEESSTTSSHHHHHHHHHHCC
T ss_pred CCeEEEEECcCCCCHHHHHHHHHhCC
Confidence 34678899999999999999997653
No 454
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=89.75 E-value=0.21 Score=44.26 Aligned_cols=23 Identities=26% Similarity=0.326 Sum_probs=20.3
Q ss_pred EEEEEEccCCCcHHHHHHHHHcc
Q 007817 197 CVIPIVGMAGAGKTMLAREVYND 219 (588)
Q Consensus 197 ~vv~I~G~gGiGKTtLA~~v~~~ 219 (588)
.-+.|.|.+|+||||||..+...
T Consensus 17 ~gvli~G~SGaGKStlal~L~~r 39 (181)
T 3tqf_A 17 MGVLITGEANIGKSELSLALIDR 39 (181)
T ss_dssp EEEEEEESSSSSHHHHHHHHHHT
T ss_pred EEEEEEcCCCCCHHHHHHHHHHc
Confidence 56889999999999999988763
No 455
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=89.75 E-value=0.21 Score=44.66 Aligned_cols=26 Identities=19% Similarity=0.364 Sum_probs=22.2
Q ss_pred CeEEEEEEccCCCcHHHHHHHHHccc
Q 007817 195 NFCVIPIVGMAGAGKTMLAREVYNDR 220 (588)
Q Consensus 195 ~~~vv~I~G~gGiGKTtLA~~v~~~~ 220 (588)
...-|+|+|.+|+|||||...+.+..
T Consensus 17 ~~~~i~v~G~~~~GKssl~~~l~~~~ 42 (186)
T 1ksh_A 17 RELRLLMLGLDNAGKTTILKKFNGED 42 (186)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHTTCC
T ss_pred CeeEEEEECCCCCCHHHHHHHHhcCC
Confidence 34678899999999999999998754
No 456
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=89.74 E-value=0.16 Score=45.21 Aligned_cols=24 Identities=29% Similarity=0.339 Sum_probs=20.9
Q ss_pred eEEEEEEccCCCcHHHHHHHHHcc
Q 007817 196 FCVIPIVGMAGAGKTMLAREVYND 219 (588)
Q Consensus 196 ~~vv~I~G~gGiGKTtLA~~v~~~ 219 (588)
..-|+|+|.+|+|||||...+...
T Consensus 21 ~~~i~v~G~~~~GKSsli~~l~~~ 44 (181)
T 2h17_A 21 EHKVIIVGLDNAGKTTILYQFSMN 44 (181)
T ss_dssp CEEEEEEEETTSSHHHHHHHHHTT
T ss_pred eeEEEEECCCCCCHHHHHHHHhcC
Confidence 356889999999999999999864
No 457
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=89.72 E-value=0.33 Score=49.87 Aligned_cols=24 Identities=21% Similarity=0.317 Sum_probs=21.7
Q ss_pred EEEEEEccCCCcHHHHHHHHHccc
Q 007817 197 CVIPIVGMAGAGKTMLAREVYNDR 220 (588)
Q Consensus 197 ~vv~I~G~gGiGKTtLA~~v~~~~ 220 (588)
.+++|+|+.|+|||||.+.+....
T Consensus 168 gii~I~GpnGSGKTTlL~allg~l 191 (418)
T 1p9r_A 168 GIILVTGPTGSGKSTTLYAGLQEL 191 (418)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHhhc
Confidence 689999999999999999988754
No 458
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}
Probab=89.69 E-value=0.18 Score=46.24 Aligned_cols=25 Identities=20% Similarity=0.325 Sum_probs=22.7
Q ss_pred EEEEEEccCCCcHHHHHHHHHcccc
Q 007817 197 CVIPIVGMAGAGKTMLAREVYNDRA 221 (588)
Q Consensus 197 ~vv~I~G~gGiGKTtLA~~v~~~~~ 221 (588)
.+|+|.|+.|+||||+++.+.+...
T Consensus 7 ~iI~i~g~~GsGk~ti~~~la~~lg 31 (201)
T 3fdi_A 7 IIIAIGREFGSGGHLVAKKLAEHYN 31 (201)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHTT
T ss_pred eEEEEeCCCCCCHHHHHHHHHHHhC
Confidence 5899999999999999999998654
No 459
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=89.66 E-value=0.15 Score=45.29 Aligned_cols=25 Identities=32% Similarity=0.378 Sum_probs=21.1
Q ss_pred CeEEEEEEccCCCcHHHHHHHHHcc
Q 007817 195 NFCVIPIVGMAGAGKTMLAREVYND 219 (588)
Q Consensus 195 ~~~vv~I~G~gGiGKTtLA~~v~~~ 219 (588)
...-|+|+|.+|+|||||...+...
T Consensus 17 ~~~~i~v~G~~~~GKssli~~l~~~ 41 (183)
T 1moz_A 17 KELRILILGLDGAGKTTILYRLQIG 41 (183)
T ss_dssp SCEEEEEEEETTSSHHHHHHHTCCS
T ss_pred CccEEEEECCCCCCHHHHHHHHhcC
Confidence 3467889999999999999988753
No 460
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=89.66 E-value=0.18 Score=45.39 Aligned_cols=24 Identities=33% Similarity=0.470 Sum_probs=21.1
Q ss_pred EEEEEEccCCCcHHHHHHHHHccc
Q 007817 197 CVIPIVGMAGAGKTMLAREVYNDR 220 (588)
Q Consensus 197 ~vv~I~G~gGiGKTtLA~~v~~~~ 220 (588)
.-|+|+|.+|+|||||...+.+..
T Consensus 16 ~~i~v~G~~~~GKssli~~l~~~~ 39 (195)
T 1x3s_A 16 LKILIIGESGVGKSSLLLRFTDDT 39 (195)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eEEEEECCCCCCHHHHHHHHHcCC
Confidence 578899999999999999998754
No 461
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=89.65 E-value=0.24 Score=44.34 Aligned_cols=24 Identities=29% Similarity=0.339 Sum_probs=21.1
Q ss_pred eEEEEEEccCCCcHHHHHHHHHcc
Q 007817 196 FCVIPIVGMAGAGKTMLAREVYND 219 (588)
Q Consensus 196 ~~vv~I~G~gGiGKTtLA~~v~~~ 219 (588)
..-|+|+|.+|+|||||...+.+.
T Consensus 16 ~~~i~v~G~~~~GKssl~~~l~~~ 39 (187)
T 1zj6_A 16 EHKVIIVGLDNAGKTTILYQFSMN 39 (187)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTT
T ss_pred ccEEEEECCCCCCHHHHHHHHhcC
Confidence 467889999999999999999854
No 462
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=89.62 E-value=0.18 Score=46.56 Aligned_cols=26 Identities=27% Similarity=0.312 Sum_probs=20.9
Q ss_pred CeEEEEEEccCCCcHHHHHHHHHccc
Q 007817 195 NFCVIPIVGMAGAGKTMLAREVYNDR 220 (588)
Q Consensus 195 ~~~vv~I~G~gGiGKTtLA~~v~~~~ 220 (588)
..--|+|+|.+|+|||||...+.+..
T Consensus 33 ~~~ki~vvG~~~vGKSsli~~l~~~~ 58 (214)
T 2j1l_A 33 RSVKVVLVGDGGCGKTSLLMVFADGA 58 (214)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHC--
T ss_pred ceEEEEEECcCCCCHHHHHHHHHcCC
Confidence 34568899999999999999998643
No 463
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=89.61 E-value=0.18 Score=46.89 Aligned_cols=22 Identities=27% Similarity=0.373 Sum_probs=19.2
Q ss_pred EEEEEccCCCcHHHHHHHHHcc
Q 007817 198 VIPIVGMAGAGKTMLAREVYND 219 (588)
Q Consensus 198 vv~I~G~gGiGKTtLA~~v~~~ 219 (588)
-|.|+|.+|+|||+|+..+.++
T Consensus 15 KivlvGd~~VGKTsLi~r~~~~ 36 (216)
T 4dkx_A 15 KLVFLGEQSVGKTSLITRFMYD 36 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCcCHHHHHHHHHhC
Confidence 4678899999999999998765
No 464
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=89.60 E-value=0.16 Score=45.88 Aligned_cols=25 Identities=32% Similarity=0.434 Sum_probs=20.3
Q ss_pred eEEEEEEccCCCcHHHHHHHHHccc
Q 007817 196 FCVIPIVGMAGAGKTMLAREVYNDR 220 (588)
Q Consensus 196 ~~vv~I~G~gGiGKTtLA~~v~~~~ 220 (588)
..-|+|+|.+|+|||||...+....
T Consensus 26 ~~ki~vvG~~~~GKSsLi~~l~~~~ 50 (192)
T 2il1_A 26 KLQVIIIGSRGVGKTSLMERFTDDT 50 (192)
T ss_dssp EEEEEEECSTTSSHHHHHHHHCC--
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCC
Confidence 3568899999999999999997654
No 465
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=89.60 E-value=0.18 Score=51.35 Aligned_cols=23 Identities=22% Similarity=0.358 Sum_probs=20.8
Q ss_pred EEEEEEccCCCcHHHHHHHHHcc
Q 007817 197 CVIPIVGMAGAGKTMLAREVYND 219 (588)
Q Consensus 197 ~vv~I~G~gGiGKTtLA~~v~~~ 219 (588)
.+++|+|+.|+|||||.+.+..-
T Consensus 48 e~~~llGpsGsGKSTLLr~iaGl 70 (390)
T 3gd7_A 48 QRVGLLGRTGSGKSTLLSAFLRL 70 (390)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTC
T ss_pred CEEEEECCCCChHHHHHHHHhCC
Confidence 58999999999999999999763
No 466
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=89.58 E-value=0.11 Score=52.09 Aligned_cols=24 Identities=33% Similarity=0.369 Sum_probs=21.2
Q ss_pred EEEEEEccCCCcHHHHHHHHHccc
Q 007817 197 CVIPIVGMAGAGKTMLAREVYNDR 220 (588)
Q Consensus 197 ~vv~I~G~gGiGKTtLA~~v~~~~ 220 (588)
.+++|+|+.|+|||||.+.++--.
T Consensus 32 e~~~llGpnGsGKSTLLr~iaGl~ 55 (353)
T 1oxx_K 32 ERFGILGPSGAGKTTFMRIIAGLD 55 (353)
T ss_dssp CEEEEECSCHHHHHHHHHHHHTSS
T ss_pred CEEEEECCCCCcHHHHHHHHhCCC
Confidence 589999999999999999997643
No 467
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=89.58 E-value=0.19 Score=52.73 Aligned_cols=26 Identities=23% Similarity=0.386 Sum_probs=22.7
Q ss_pred eEEEEEEccCCCcHHHHHHHHHcccc
Q 007817 196 FCVIPIVGMAGAGKTMLAREVYNDRA 221 (588)
Q Consensus 196 ~~vv~I~G~gGiGKTtLA~~v~~~~~ 221 (588)
..+|.++|++|+||||+++.+.+...
T Consensus 39 ~~~IvlvGlpGsGKSTia~~La~~l~ 64 (469)
T 1bif_A 39 PTLIVMVGLPARGKTYISKKLTRYLN 64 (469)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 46889999999999999999987653
No 468
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=89.55 E-value=0.18 Score=46.03 Aligned_cols=26 Identities=23% Similarity=0.424 Sum_probs=21.9
Q ss_pred CeEEEEEEccCCCcHHHHHHHHHccc
Q 007817 195 NFCVIPIVGMAGAGKTMLAREVYNDR 220 (588)
Q Consensus 195 ~~~vv~I~G~gGiGKTtLA~~v~~~~ 220 (588)
...-|+|+|.+|+|||||...+....
T Consensus 7 ~~~ki~v~G~~~~GKSsli~~l~~~~ 32 (206)
T 2bcg_Y 7 YLFKLLLIGNSGVGKSCLLLRFSDDT 32 (206)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHCC
T ss_pred cceEEEEECCCCCCHHHHHHHHhcCC
Confidence 34578899999999999999997654
No 469
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=89.54 E-value=0.21 Score=52.70 Aligned_cols=27 Identities=7% Similarity=-0.057 Sum_probs=24.0
Q ss_pred CeEEEEEEccCCCcHHHHHHHHHcccc
Q 007817 195 NFCVIPIVGMAGAGKTMLAREVYNDRA 221 (588)
Q Consensus 195 ~~~vv~I~G~gGiGKTtLA~~v~~~~~ 221 (588)
+..+|.+.|++|+||||+|+.+.+...
T Consensus 394 ~~~~I~l~GlsGsGKSTIa~~La~~L~ 420 (511)
T 1g8f_A 394 QGFSIVLGNSLTVSREQLSIALLSTFL 420 (511)
T ss_dssp CCEEEEECTTCCSCHHHHHHHHHHHHT
T ss_pred cceEEEecccCCCCHHHHHHHHHHHHH
Confidence 447899999999999999999998764
No 470
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=89.52 E-value=0.24 Score=44.44 Aligned_cols=26 Identities=27% Similarity=0.390 Sum_probs=21.8
Q ss_pred CeEEEEEEccCCCcHHHHHHHHHccc
Q 007817 195 NFCVIPIVGMAGAGKTMLAREVYNDR 220 (588)
Q Consensus 195 ~~~vv~I~G~gGiGKTtLA~~v~~~~ 220 (588)
...-|+|+|.+|+|||||...+....
T Consensus 19 ~~~ki~v~G~~~~GKSsli~~l~~~~ 44 (189)
T 1z06_A 19 RIFKIIVIGDSNVGKTCLTYRFCAGR 44 (189)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSS
T ss_pred ceEEEEEECCCCCCHHHHHHHHHcCC
Confidence 34678999999999999999987643
No 471
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=89.50 E-value=0.28 Score=48.05 Aligned_cols=35 Identities=17% Similarity=0.308 Sum_probs=27.2
Q ss_pred HHHHHHHHhcCCCCCCCCeEEEEEEccCCCcHHHHHHHHHcccc
Q 007817 178 KARMLEMVLSDDPTTDANFCVIPIVGMAGAGKTMLAREVYNDRA 221 (588)
Q Consensus 178 ~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~ 221 (588)
++++..++.. .+++|+|+.|+|||||.+.+.....
T Consensus 160 v~~lf~~l~g---------eiv~l~G~sG~GKSTll~~l~g~~~ 194 (301)
T 1u0l_A 160 IEELKEYLKG---------KISTMAGLSGVGKSSLLNAINPGLK 194 (301)
T ss_dssp HHHHHHHHSS---------SEEEEECSTTSSHHHHHHHHSTTCC
T ss_pred HHHHHHHhcC---------CeEEEECCCCCcHHHHHHHhccccc
Confidence 5666666532 4889999999999999999987543
No 472
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=89.47 E-value=0.15 Score=51.43 Aligned_cols=25 Identities=32% Similarity=0.535 Sum_probs=22.0
Q ss_pred EEEEEEccCCCcHHHHHHHHHcccc
Q 007817 197 CVIPIVGMAGAGKTMLAREVYNDRA 221 (588)
Q Consensus 197 ~vv~I~G~gGiGKTtLA~~v~~~~~ 221 (588)
.+++|+|+.|+|||||++.+.....
T Consensus 176 ~~i~ivG~sGsGKSTll~~l~~~~~ 200 (361)
T 2gza_A 176 RVIVVAGETGSGKTTLMKALMQEIP 200 (361)
T ss_dssp CCEEEEESSSSCHHHHHHHHHTTSC
T ss_pred CEEEEECCCCCCHHHHHHHHHhcCC
Confidence 4899999999999999999987543
No 473
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=89.43 E-value=0.66 Score=52.67 Aligned_cols=21 Identities=24% Similarity=0.208 Sum_probs=19.5
Q ss_pred eEEEEEEccCCCcHHHHHHHH
Q 007817 196 FCVIPIVGMAGAGKTMLAREV 216 (588)
Q Consensus 196 ~~vv~I~G~gGiGKTtLA~~v 216 (588)
-.+++|+|+.|.||||+.+.+
T Consensus 662 g~i~~ItGpNGsGKSTlLr~i 682 (934)
T 3thx_A 662 QMFHIITGPNMGGKSTYIRQT 682 (934)
T ss_dssp BCEEEEECCTTSSHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHH
Confidence 468999999999999999988
No 474
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=89.43 E-value=0.18 Score=50.47 Aligned_cols=25 Identities=28% Similarity=0.327 Sum_probs=22.6
Q ss_pred EEEEEEccCCCcHHHHHHHHHcccc
Q 007817 197 CVIPIVGMAGAGKTMLAREVYNDRA 221 (588)
Q Consensus 197 ~vv~I~G~gGiGKTtLA~~v~~~~~ 221 (588)
.+++|+|+.|+|||||.+.+.+...
T Consensus 72 q~~gIiG~nGaGKTTLl~~I~g~~~ 96 (347)
T 2obl_A 72 QRIGIFAGSGVGKSTLLGMICNGAS 96 (347)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHSC
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCC
Confidence 5899999999999999999998653
No 475
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=89.40 E-value=1.1 Score=53.33 Aligned_cols=25 Identities=20% Similarity=0.368 Sum_probs=22.3
Q ss_pred EEEEEEccCCCcHHHHHHHHHcccc
Q 007817 197 CVIPIVGMAGAGKTMLAREVYNDRA 221 (588)
Q Consensus 197 ~vv~I~G~gGiGKTtLA~~v~~~~~ 221 (588)
..++|+|+.|+|||||++.+.....
T Consensus 445 ~~vaivG~sGsGKSTll~ll~~~~~ 469 (1321)
T 4f4c_A 445 QTVALVGSSGCGKSTIISLLLRYYD 469 (1321)
T ss_dssp CEEEEEECSSSCHHHHHHHHTTSSC
T ss_pred cEEEEEecCCCcHHHHHHHhccccc
Confidence 5899999999999999999987554
No 476
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=89.39 E-value=0.22 Score=44.95 Aligned_cols=24 Identities=29% Similarity=0.329 Sum_probs=20.7
Q ss_pred eEEEEEEccCCCcHHHHHHHHHcc
Q 007817 196 FCVIPIVGMAGAGKTMLAREVYND 219 (588)
Q Consensus 196 ~~vv~I~G~gGiGKTtLA~~v~~~ 219 (588)
..-|+|+|.+|+|||||...+...
T Consensus 29 ~~ki~v~G~~~vGKSsLi~~l~~~ 52 (192)
T 2b6h_A 29 QMRILMVGLDAAGKTTILYKLKLG 52 (192)
T ss_dssp CEEEEEEESTTSSHHHHHHHHCSS
T ss_pred ccEEEEECCCCCCHHHHHHHHHhC
Confidence 356889999999999999999754
No 477
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=89.37 E-value=0.19 Score=50.37 Aligned_cols=25 Identities=20% Similarity=0.314 Sum_probs=21.7
Q ss_pred EEEEEEccCCCcHHHHHHHHHcccc
Q 007817 197 CVIPIVGMAGAGKTMLAREVYNDRA 221 (588)
Q Consensus 197 ~vv~I~G~gGiGKTtLA~~v~~~~~ 221 (588)
.+++|+|++|+|||||.+.+.....
T Consensus 216 ~~~~lvG~sG~GKSTLln~L~g~~~ 240 (358)
T 2rcn_A 216 RISIFAGQSGVGKSSLLNALLGLQN 240 (358)
T ss_dssp SEEEEECCTTSSHHHHHHHHHCCSS
T ss_pred CEEEEECCCCccHHHHHHHHhcccc
Confidence 4889999999999999999987543
No 478
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=89.33 E-value=0.44 Score=45.54 Aligned_cols=26 Identities=19% Similarity=0.425 Sum_probs=22.6
Q ss_pred CeEEEEEEccCCCcHHHHHHHHHccc
Q 007817 195 NFCVIPIVGMAGAGKTMLAREVYNDR 220 (588)
Q Consensus 195 ~~~vv~I~G~gGiGKTtLA~~v~~~~ 220 (588)
....|+|+|.+|+|||||...+....
T Consensus 35 ~~~~I~lvG~~g~GKSSLin~l~~~~ 60 (262)
T 3def_A 35 NSMTVLVLGKGGVGKSSTVNSLIGEQ 60 (262)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHTSC
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 45678999999999999999998754
No 479
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=89.32 E-value=0.23 Score=53.71 Aligned_cols=26 Identities=27% Similarity=0.448 Sum_probs=23.2
Q ss_pred CeEEEEEEccCCCcHHHHHHHHHccc
Q 007817 195 NFCVIPIVGMAGAGKTMLAREVYNDR 220 (588)
Q Consensus 195 ~~~vv~I~G~gGiGKTtLA~~v~~~~ 220 (588)
...+|.|.|++|+||||+|+.+.+..
T Consensus 51 ~g~lIvLtGlsGSGKSTlAr~La~~L 76 (630)
T 1x6v_B 51 RGCTVWLTGLSGAGKTTVSMALEEYL 76 (630)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHH
Confidence 45789999999999999999998865
No 480
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=89.29 E-value=0.15 Score=54.38 Aligned_cols=26 Identities=31% Similarity=0.408 Sum_probs=23.0
Q ss_pred eEEEEEEccCCCcHHHHHHHHHcccc
Q 007817 196 FCVIPIVGMAGAGKTMLAREVYNDRA 221 (588)
Q Consensus 196 ~~vv~I~G~gGiGKTtLA~~v~~~~~ 221 (588)
-.+++|+|+.|+|||||++.+.....
T Consensus 369 G~iI~LiG~sGSGKSTLar~La~~L~ 394 (552)
T 3cr8_A 369 GFTVFFTGLSGAGKSTLARALAARLM 394 (552)
T ss_dssp CEEEEEEESSCHHHHHHHHHHHHHHH
T ss_pred ceEEEEECCCCChHHHHHHHHHHhhc
Confidence 37899999999999999999988654
No 481
>3ch4_B Pmkase, phosphomevalonate kinase; parallel beta-sheet with the strand order 23145, walker A motif, cholesterol biosynthesis, lipid synthesis; 1.76A {Homo sapiens}
Probab=89.27 E-value=0.27 Score=44.92 Aligned_cols=24 Identities=17% Similarity=0.253 Sum_probs=21.5
Q ss_pred CeEEEEEEccCCCcHHHHHHHHHc
Q 007817 195 NFCVIPIVGMAGAGKTMLAREVYN 218 (588)
Q Consensus 195 ~~~vv~I~G~gGiGKTtLA~~v~~ 218 (588)
...+|+|+|++|+||+|+|..+.+
T Consensus 10 ~~~II~itGk~~SGKd~va~~l~~ 33 (202)
T 3ch4_B 10 PRLVLLFSGKRKSGKDFVTEALQS 33 (202)
T ss_dssp CSEEEEEEECTTSSHHHHHHHHHH
T ss_pred CCEEEEEECCCCCChHHHHHHHHH
Confidence 457999999999999999988865
No 482
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=89.24 E-value=0.19 Score=45.95 Aligned_cols=24 Identities=29% Similarity=0.308 Sum_probs=21.0
Q ss_pred EEEEEEccCCCcHHHHHHHHHccc
Q 007817 197 CVIPIVGMAGAGKTMLAREVYNDR 220 (588)
Q Consensus 197 ~vv~I~G~gGiGKTtLA~~v~~~~ 220 (588)
.-|+|+|.+|+|||||...+....
T Consensus 26 ~ki~vvG~~~~GKSsli~~l~~~~ 49 (207)
T 2fv8_A 26 KKLVVVGDGACGKTCLLIVFSKDE 49 (207)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHSS
T ss_pred cEEEEECcCCCCHHHHHHHHhcCC
Confidence 568899999999999999998753
No 483
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=89.24 E-value=0.2 Score=45.22 Aligned_cols=25 Identities=32% Similarity=0.321 Sum_probs=21.5
Q ss_pred eEEEEEEccCCCcHHHHHHHHHccc
Q 007817 196 FCVIPIVGMAGAGKTMLAREVYNDR 220 (588)
Q Consensus 196 ~~vv~I~G~gGiGKTtLA~~v~~~~ 220 (588)
..-|+|+|.+|+|||||...+.+..
T Consensus 18 ~~ki~v~G~~~~GKssli~~l~~~~ 42 (194)
T 2atx_A 18 MLKCVVVGDGAVGKTCLLMSYANDA 42 (194)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHSS
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCC
Confidence 3578899999999999999998753
No 484
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=89.22 E-value=0.26 Score=42.73 Aligned_cols=22 Identities=27% Similarity=0.446 Sum_probs=19.7
Q ss_pred EEEEEEccCCCcHHHHHHHHHc
Q 007817 197 CVIPIVGMAGAGKTMLAREVYN 218 (588)
Q Consensus 197 ~vv~I~G~gGiGKTtLA~~v~~ 218 (588)
.+.+|+|+.|+|||||...++-
T Consensus 24 g~~~I~G~NGsGKStil~Ai~~ 45 (149)
T 1f2t_A 24 GINLIIGQNGSGKSSLLDAILV 45 (149)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 5889999999999999988764
No 485
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=89.20 E-value=0.23 Score=47.78 Aligned_cols=25 Identities=24% Similarity=0.368 Sum_probs=21.6
Q ss_pred eEEEEEEccCCCcHHHHHHHHHccc
Q 007817 196 FCVIPIVGMAGAGKTMLAREVYNDR 220 (588)
Q Consensus 196 ~~vv~I~G~gGiGKTtLA~~v~~~~ 220 (588)
...|+|+|.+|+|||||...+....
T Consensus 3 ~~~i~lvG~~g~GKTTL~n~l~g~~ 27 (271)
T 3k53_A 3 LKTVALVGNPNVGKTTIFNALTGLR 27 (271)
T ss_dssp CEEEEEEECSSSSHHHHHHHHHTTC
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCC
Confidence 3578999999999999999997653
No 486
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=89.18 E-value=0.58 Score=42.92 Aligned_cols=25 Identities=36% Similarity=0.565 Sum_probs=22.2
Q ss_pred EEEEEEccCCCcHHHHHHHHHcccc
Q 007817 197 CVIPIVGMAGAGKTMLAREVYNDRA 221 (588)
Q Consensus 197 ~vv~I~G~gGiGKTtLA~~v~~~~~ 221 (588)
..|+|-|..|+||||+++.+.+...
T Consensus 3 kFI~~EG~dGsGKsTq~~~L~~~L~ 27 (205)
T 4hlc_A 3 AFITFEGPEGSGKTTVINEVYHRLV 27 (205)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CEEEEECCCCCcHHHHHHHHHHHHH
Confidence 4788999999999999999988764
No 487
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=89.14 E-value=0.2 Score=45.67 Aligned_cols=26 Identities=23% Similarity=0.300 Sum_probs=21.9
Q ss_pred CeEEEEEEccCCCcHHHHHHHHHccc
Q 007817 195 NFCVIPIVGMAGAGKTMLAREVYNDR 220 (588)
Q Consensus 195 ~~~vv~I~G~gGiGKTtLA~~v~~~~ 220 (588)
...-|+|+|.+|+|||||+..+.+..
T Consensus 28 ~~~ki~vvG~~~vGKSsli~~l~~~~ 53 (201)
T 2hup_A 28 FLFKLVLVGDASVGKTCVVQRFKTGA 53 (201)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHSC
T ss_pred cceEEEEECcCCCCHHHHHHHHhhCC
Confidence 34678899999999999999987653
No 488
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=89.09 E-value=0.47 Score=45.58 Aligned_cols=26 Identities=27% Similarity=0.484 Sum_probs=22.5
Q ss_pred CeEEEEEEccCCCcHHHHHHHHHccc
Q 007817 195 NFCVIPIVGMAGAGKTMLAREVYNDR 220 (588)
Q Consensus 195 ~~~vv~I~G~gGiGKTtLA~~v~~~~ 220 (588)
....|+++|.+|+|||||...+....
T Consensus 38 ~~~~I~vvG~~g~GKSSLin~l~~~~ 63 (270)
T 1h65_A 38 NSLTILVMGKGGVGKSSTVNSIIGER 63 (270)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCCC
Confidence 45678899999999999999998754
No 489
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=89.09 E-value=0.27 Score=44.30 Aligned_cols=24 Identities=21% Similarity=0.317 Sum_probs=20.8
Q ss_pred eEEEEEEccCCCcHHHHHHHHHcc
Q 007817 196 FCVIPIVGMAGAGKTMLAREVYND 219 (588)
Q Consensus 196 ~~vv~I~G~gGiGKTtLA~~v~~~ 219 (588)
..-|+|+|.+|+|||||...+...
T Consensus 8 ~~ki~vvG~~~~GKSsli~~l~~~ 31 (199)
T 2gf0_A 8 DYRVVVFGAGGVGKSSLVLRFVKG 31 (199)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHS
T ss_pred eeEEEEECCCCCcHHHHHHHHHcC
Confidence 356789999999999999999764
No 490
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=89.07 E-value=0.2 Score=45.78 Aligned_cols=25 Identities=28% Similarity=0.485 Sum_probs=21.3
Q ss_pred eEEEEEEccCCCcHHHHHHHHHccc
Q 007817 196 FCVIPIVGMAGAGKTMLAREVYNDR 220 (588)
Q Consensus 196 ~~vv~I~G~gGiGKTtLA~~v~~~~ 220 (588)
..-|+|+|.+|+|||||...+....
T Consensus 20 ~~~i~v~G~~~~GKSsli~~l~~~~ 44 (213)
T 3cph_A 20 IMKILLIGDSGVGKSCLLVRFVEDK 44 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHCC
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCC
Confidence 4578899999999999999988653
No 491
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=89.06 E-value=0.16 Score=45.67 Aligned_cols=24 Identities=17% Similarity=0.347 Sum_probs=21.2
Q ss_pred EEEEEEccCCCcHHHHHHHHHccc
Q 007817 197 CVIPIVGMAGAGKTMLAREVYNDR 220 (588)
Q Consensus 197 ~vv~I~G~gGiGKTtLA~~v~~~~ 220 (588)
.-|+|+|.+|+|||||...+....
T Consensus 22 ~ki~v~G~~~~GKSsli~~l~~~~ 45 (190)
T 2h57_A 22 VHVLCLGLDNSGKTTIINKLKPSN 45 (190)
T ss_dssp EEEEEEECTTSSHHHHHHHTSCGG
T ss_pred cEEEEECCCCCCHHHHHHHHhcCC
Confidence 567899999999999999998765
No 492
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=89.05 E-value=0.28 Score=45.26 Aligned_cols=24 Identities=25% Similarity=0.479 Sum_probs=20.6
Q ss_pred CeEEEEEEccCCCcHHHHHHHHHc
Q 007817 195 NFCVIPIVGMAGAGKTMLAREVYN 218 (588)
Q Consensus 195 ~~~vv~I~G~gGiGKTtLA~~v~~ 218 (588)
...-|+|+|.+|+|||||...+..
T Consensus 36 ~~~kVvlvG~~~vGKSSLl~r~~~ 59 (211)
T 2g3y_A 36 TYYRVVLIGEQGVGKSTLANIFAG 59 (211)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHC
T ss_pred CceEEEEECCCCCCHHHHHHHHHh
Confidence 345688999999999999999874
No 493
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=89.04 E-value=0.2 Score=45.88 Aligned_cols=26 Identities=23% Similarity=0.258 Sum_probs=21.7
Q ss_pred CeEEEEEEccCCCcHHHHHHHHHccc
Q 007817 195 NFCVIPIVGMAGAGKTMLAREVYNDR 220 (588)
Q Consensus 195 ~~~vv~I~G~gGiGKTtLA~~v~~~~ 220 (588)
..--|+|+|.+|+|||||...+.+..
T Consensus 8 ~~~ki~i~G~~~~GKTsli~~l~~~~ 33 (212)
T 2j0v_A 8 KFIKCVTVGDGAVGKTCMLICYTSNK 33 (212)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHSC
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCC
Confidence 34568899999999999999988653
No 494
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=88.99 E-value=0.21 Score=45.48 Aligned_cols=24 Identities=33% Similarity=0.336 Sum_probs=21.0
Q ss_pred EEEEEEccCCCcHHHHHHHHHccc
Q 007817 197 CVIPIVGMAGAGKTMLAREVYNDR 220 (588)
Q Consensus 197 ~vv~I~G~gGiGKTtLA~~v~~~~ 220 (588)
.-|+|+|.+|+|||||...+....
T Consensus 26 ~ki~vvG~~~~GKSsli~~l~~~~ 49 (201)
T 2gco_A 26 KKLVIVGDGACGKTCLLIVFSKDQ 49 (201)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSS
T ss_pred eEEEEECCCCCCHHHHHHHHHhCc
Confidence 568899999999999999998753
No 495
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=88.93 E-value=0.13 Score=45.85 Aligned_cols=25 Identities=24% Similarity=0.386 Sum_probs=10.8
Q ss_pred CeEEEEEEccCCCcHHHHHHHHHcc
Q 007817 195 NFCVIPIVGMAGAGKTMLAREVYND 219 (588)
Q Consensus 195 ~~~vv~I~G~gGiGKTtLA~~v~~~ 219 (588)
...-|+|+|.+|+|||||...+.+.
T Consensus 7 ~~~ki~v~G~~~~GKssl~~~l~~~ 31 (183)
T 2fu5_C 7 YLFKLLLIGDSGVGKTCVLFRFSED 31 (183)
T ss_dssp EEEEEEEECCCCC------------
T ss_pred CceEEEEECCCCCCHHHHHHHHHhC
Confidence 3457889999999999999888754
No 496
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=88.86 E-value=0.39 Score=47.15 Aligned_cols=42 Identities=12% Similarity=0.219 Sum_probs=28.7
Q ss_pred HHHHHHHHhcCCCCCCCCeEEEEEEccCCCcHHHHHHHHHccc
Q 007817 178 KARMLEMVLSDDPTTDANFCVIPIVGMAGAGKTMLAREVYNDR 220 (588)
Q Consensus 178 ~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~ 220 (588)
+++|.+.+..... .....+.|+|+|.+|+|||||...+....
T Consensus 7 ~~~l~~~~~~~~~-~~~~~~~I~vvG~~~~GKSTlln~l~g~~ 48 (315)
T 1jwy_B 7 INKLQDVFNTLGS-DPLDLPQIVVVGSQSSGKSSVLENIVGRD 48 (315)
T ss_dssp HHHHHHHTTTSSS-CTTCCCEEEEEECSSSSHHHHHHHHHTSC
T ss_pred HHHHHHHHHHcCC-CCCCCCeEEEEcCCCCCHHHHHHHHHCCC
Confidence 3445554432221 12356789999999999999999997653
No 497
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=88.77 E-value=0.22 Score=45.96 Aligned_cols=24 Identities=29% Similarity=0.499 Sum_probs=20.8
Q ss_pred EEEEEEccCCCcHHHHHHHHHccc
Q 007817 197 CVIPIVGMAGAGKTMLAREVYNDR 220 (588)
Q Consensus 197 ~vv~I~G~gGiGKTtLA~~v~~~~ 220 (588)
--|+|+|.+|+|||||...+....
T Consensus 28 ~ki~vvG~~~vGKSsL~~~l~~~~ 51 (214)
T 3q3j_B 28 CKLVLVGDVQCGKTAMLQVLAKDC 51 (214)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEEECcCCCCHHHHHHHHhcCC
Confidence 467899999999999999987653
No 498
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=88.71 E-value=0.21 Score=44.74 Aligned_cols=21 Identities=33% Similarity=0.431 Sum_probs=19.2
Q ss_pred EEEEccCCCcHHHHHHHHHcc
Q 007817 199 IPIVGMAGAGKTMLAREVYND 219 (588)
Q Consensus 199 v~I~G~gGiGKTtLA~~v~~~ 219 (588)
+.|+|.+|+||||+|.++...
T Consensus 2 ilV~Gg~~SGKS~~A~~la~~ 22 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAEALIGD 22 (180)
T ss_dssp EEEEECTTSSHHHHHHHHHCS
T ss_pred EEEECCCCCcHHHHHHHHHhc
Confidence 689999999999999999865
No 499
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=88.65 E-value=0.23 Score=45.68 Aligned_cols=26 Identities=19% Similarity=0.333 Sum_probs=21.8
Q ss_pred CeEEEEEEccCCCcHHHHHHHHHccc
Q 007817 195 NFCVIPIVGMAGAGKTMLAREVYNDR 220 (588)
Q Consensus 195 ~~~vv~I~G~gGiGKTtLA~~v~~~~ 220 (588)
..--|+|+|.+|+|||||...+....
T Consensus 24 ~~~ki~vvG~~~~GKSsLi~~l~~~~ 49 (217)
T 2f7s_A 24 YLIKLLALGDSGVGKTTFLYRYTDNK 49 (217)
T ss_dssp EEEEEEEESCTTSSHHHHHHHHHCSC
T ss_pred eeEEEEEECcCCCCHHHHHHHHhcCC
Confidence 34568899999999999999998653
No 500
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=88.62 E-value=0.17 Score=50.31 Aligned_cols=105 Identities=9% Similarity=0.062 Sum_probs=56.1
Q ss_pred EEEEEEccCCCcHHHHHHHHHcccccccccccEEEEEEeCCcccHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhcCC
Q 007817 197 CVIPIVGMAGAGKTMLAREVYNDRAVQNFKFDVKAWVSVSDDFDVLRISRALLESITSTNCDFKTLNEVQVKLRIIVDGK 276 (588)
Q Consensus 197 ~vv~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~il~~l~~~~~~~~~~~~l~~~l~~~l~~k 276 (588)
.+++|+|+.|+|||||++.+..-... -...+.+.-......... . ..+..-. + ........+...|..+
T Consensus 172 ~~v~i~G~~GsGKTTll~~l~g~~~~----~~g~i~i~~~~e~~~~~~-~---~~i~~~~-g--gg~~~r~~la~aL~~~ 240 (330)
T 2pt7_A 172 KNVIVCGGTGSGKTTYIKSIMEFIPK----EERIISIEDTEEIVFKHH-K---NYTQLFF-G--GNITSADCLKSCLRMR 240 (330)
T ss_dssp CCEEEEESTTSCHHHHHHHGGGGSCT----TSCEEEEESSCCCCCSSC-S---SEEEEEC-B--TTBCHHHHHHHHTTSC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCcC----CCcEEEECCeeccccccc-h---hEEEEEe-C--CChhHHHHHHHHhhhC
Confidence 48999999999999999999875432 123444432211110000 0 0000000 0 1122344566777788
Q ss_pred ceeEEeccccccChhHHHHhhcccCCCCCCcEEEEeecchh
Q 007817 277 KFLLVLDDVWNENYNLWEILKAPFMAGARNSKIIVTTCHSN 317 (588)
Q Consensus 277 ~~LLVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTTR~~~ 317 (588)
+=+|++|.+.. ...++.+. .+..+ +..+|+||...+
T Consensus 241 p~ilildE~~~--~e~~~~l~-~~~~g--~~tvi~t~H~~~ 276 (330)
T 2pt7_A 241 PDRIILGELRS--SEAYDFYN-VLCSG--HKGTLTTLHAGS 276 (330)
T ss_dssp CSEEEECCCCS--THHHHHHH-HHHTT--CCCEEEEEECSS
T ss_pred CCEEEEcCCCh--HHHHHHHH-HHhcC--CCEEEEEEcccH
Confidence 88999999854 23444433 23222 223677775544
Done!